##fileformat=VCFv4.2
##FILTER=<ID=GOF,Description="Variant fails goodness-of-fit test.">
##FILTER=<ID=HapScore,Description="Too many haplotypes are supported by the data in this region.">
##FILTER=<ID=MQ,Description="Root-mean-square mapping quality across calling region is low.">
##FILTER=<ID=Q20,Description="Variant quality is below 20.">
##FILTER=<ID=QD,Description="Variants fail quality/depth filter.">
##FILTER=<ID=QualDepth,Description="Variant quality/Read depth ratio is low.">
##FILTER=<ID=REFCALL,Description="This line represents a homozygous reference call">
##FILTER=<ID=SC,Description="Variants fail sequence-context filter. Surrounding sequence is low-complexity">
##FILTER=<ID=alleleBias,Description="Variant frequency is lower than expected for het">
##FILTER=<ID=badReads,Description="Variant supported only by reads with low quality bases close to variant position, and not present on both strands.">
##FILTER=<ID=hp10,Description="Flanking sequence contains homopolymer of length 10 or greater">
##FILTER=<ID=strandBias,Description="Variant fails strand-bias filter">
##FORMAT=<ID=AD,Number=R,Type=Integer,Description="Allelic depths for the ref and alt alleles in the order listed">
##FORMAT=<ID=AF,Number=1,Type=Float,Description="Allelic frequency for the alt alleles in the order listed">
##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read depth">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##GATKCommandLine.CombineVariants=<ID=CombineVariants,Version=3.8-1-0-gf15c1c3ef,Date="Tue Aug 20 16:26:51 UTC 2024",Epoch=1724171211683,CommandLineOptions="analysis_type=CombineVariants input_file=[] showFullBamList=false read_buffer_size=null read_filter=[] disable_read_filter=[] intervals=null excludeIntervals=null interval_set_rule=UNION interval_merging=ALL interval_padding=0 reference_sequence=/data/MoCha/patidarr/ref/ucsc.hg19.fasta nonDeterministicRandomSeed=false disableDithering=false maxRuntime=-1 maxRuntimeUnits=MINUTES downsampling_type=BY_SAMPLE downsample_to_fraction=null downsample_to_coverage=10000 baq=OFF baqGapOpenPenalty=40.0 refactor_NDN_cigar_string=false fix_misencoded_quality_scores=false allow_potentially_misencoded_quality_scores=false useOriginalQualities=false defaultBaseQualities=-1 performanceLog=null BQSR=null quantize_quals=0 static_quantized_quals=null round_down_quantized=false disable_indel_quals=false emit_original_quals=false preserve_qscores_less_than=6 globalQScorePrior=-1.0 secondsBetweenProgressUpdates=10 validation_strictness=SILENT remove_program_records=false keep_program_records=false sample_rename_mapping_file=null unsafe=null use_jdk_deflater=true use_jdk_inflater=true disable_auto_index_creation_and_locking_when_reading_rods=false no_cmdline_in_header=false sites_only=false never_trim_vcf_format_field=false bcf=false bam_compression=null simplifyBAM=false disable_bam_indexing=false generate_md5=false num_threads=2 num_cpu_threads_per_data_thread=1 num_io_threads=0 monitorThreadEfficiency=false num_bam_file_handles=null read_group_black_list=null pedigree=[] pedigreeString=[] pedigreeValidationType=STRICT allow_intervals_with_unindexed_bam=false generateShadowBCF=false variant_index_type=DYNAMIC_SEEK variant_index_parameter=-1 reference_window_stop=0 phone_home= gatk_key=null tag=NA logging_level=INFO log_to_file=null help=false version=false variant=[(RodBindingCollection [(RodBinding name=HC source=/lscratch/33899073//HC.vcf)]), (RodBindingCollection [(RodBinding name=Platypus source=/lscratch/33899073//PL.vcf)])] out=/vf/users/MoCha/processedDATA/965729/20170910/965729~122-R~J2-PDC~WES/calls/965729~122-R~J2-PDC~WES.merged.vcf genotypemergeoption=PRIORITIZE filteredrecordsmergetype=KEEP_IF_ANY_UNFILTERED multipleallelesmergetype=BY_TYPE rod_priority_list=HC,Platypus printComplexMerges=false filteredAreUncalled=false minimalVCF=false excludeNonVariants=false setKey=set assumeIdenticalSamples=false minimumN=1 suppressCommandLineHeader=false mergeInfoWithMaxAC=false filter_reads_with_N_cigar=false filter_mismatching_base_and_quals=false filter_bases_not_stored=false">
##INFO=<ID=AC,Number=A,Type=Integer,Description="Allele count in genotypes, for each ALT allele, in the same order as listed">
##INFO=<ID=AF,Number=A,Type=Float,Description="Allele Frequency, for each ALT allele, in the same order as listed">
##INFO=<ID=AF,Number=A,Type=Float,Description="Allele frequency, for each ALT allele, in the same order as listed">
##INFO=<ID=ALERT,Number=0,Type=Flag,Description="Variant is adjacent to other variants, but case was too complex for joinAdjacentSNPs to handle. Please review.">
##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes">
##INFO=<ID=BRF,Number=1,Type=Float,Description="Fraction of reads around this variant that failed filters">
##INFO=<ID=BaseQRankSum,Number=1,Type=Float,Description="Z-score from Wilcoxon rank sum test of Alt Vs. Ref base qualities">
##INFO=<ID=ClippingRankSum,Number=1,Type=Float,Description="Z-score From Wilcoxon rank sum test of Alt vs. Ref number of hard clipped bases">
##INFO=<ID=DB,Number=0,Type=Flag,Description="dbSNP membership">
##INFO=<ID=DP,Number=1,Type=Integer,Description="Combined depth across samples">
##INFO=<ID=END,Number=1,Type=Integer,Description="Stop position of the interval">
##INFO=<ID=ExcessHet,Number=1,Type=Float,Description="Phred-scaled p-value for exact test of excess heterozygosity">
##INFO=<ID=FR,Number=.,Type=Float,Description="Estimated population frequency of variant">
##INFO=<ID=FS,Number=.,Type=Float,Description="Fisher's exact test for strand bias (Phred scale)">
##INFO=<ID=HP,Number=1,Type=Integer,Description="Homopolymer run length around variant locus">
##INFO=<ID=HapScore,Number=.,Type=Integer,Description="Haplotype score measuring the number of haplotypes the variant is segregating into in a window">
##INFO=<ID=InbreedingCoeff,Number=1,Type=Float,Description="Inbreeding coefficient as estimated from the genotype likelihoods per-sample when compared against the Hardy-Weinberg expectation">
##INFO=<ID=JOINED,Number=0,Type=Flag,Description="Variant is the result of joining adjacent SNPs/MNPs. Please use caution when interpreting sample-specific values.">
##INFO=<ID=MGOF,Number=.,Type=Integer,Description="Worst goodness-of-fit value reported across all samples">
##INFO=<ID=MLEAC,Number=A,Type=Integer,Description="Maximum likelihood expectation (MLE) for the allele counts, for each ALT allele, in the same order as listed">
##INFO=<ID=MLEAF,Number=A,Type=Float,Description="Maximum likelihood expectation (MLE) for the allele frequency, for each ALT allele, in the same order as listed">
##INFO=<ID=MMLQ,Number=1,Type=Float,Description="Median minimum base quality for bases around variant">
##INFO=<ID=MQ,Number=1,Type=Float,Description="RMS Mapping Quality">
##INFO=<ID=MQRankSum,Number=1,Type=Float,Description="Z-score From Wilcoxon rank sum test of Alt vs. Ref read mapping qualities">
##INFO=<ID=NF,Number=.,Type=Integer,Description="Total number of forward reads containing this variant">
##INFO=<ID=NR,Number=.,Type=Integer,Description="Total number of reverse reads containing this variant">
##INFO=<ID=PP,Number=.,Type=Float,Description="Posterior probability (phred scaled) that this variant segregates">
##INFO=<ID=QD,Number=1,Type=Float,Description="Variant-quality/read-depth for this variant">
##INFO=<ID=ReadPosRankSum,Number=.,Type=Float,Description="Mann-Whitney Rank sum test for difference between in positions of variants in reads from ref and alt">
##INFO=<ID=SC,Number=1,Type=String,Description="Genomic sequence 10 bases either side of variant position">
##INFO=<ID=SOR,Number=1,Type=Float,Description="Symmetric Odds Ratio of 2x2 contingency table to detect strand bias">
##INFO=<ID=START,Number=.,Type=Integer,Description="Start position of reference call block">
##INFO=<ID=SbPval,Number=.,Type=Float,Description="Binomial P-value for strand bias test">
##INFO=<ID=Size,Number=.,Type=Integer,Description="Size of reference call block">
##INFO=<ID=Source,Number=.,Type=String,Description="Was this variant suggested by Playtypus, Assembler, or from a VCF?">
##INFO=<ID=TC,Number=1,Type=Integer,Description="Total coverage at this locus">
##INFO=<ID=TCF,Number=1,Type=Integer,Description="Total forward strand coverage at this locus">
##INFO=<ID=TCR,Number=1,Type=Integer,Description="Total reverse strand coverage at this locus">
##INFO=<ID=TR,Number=.,Type=Integer,Description="Total number of reads containing this variant">
##INFO=<ID=WE,Number=1,Type=Integer,Description="End position of calling window">
##INFO=<ID=WS,Number=1,Type=Integer,Description="Starting position of calling window">
##INFO=<ID=set,Number=1,Type=String,Description="Source VCF for the merged record in CombineVariants">
##SentieonCommandLine.Haplotyper=<ID=Haplotyper,Version="sentieon-genomics-201711",Date="2024-07-04T12:54:52Z",CommandLine="/data/MoCha/patidarr/sentieon/sentieon-genomics-201711/libexec/driver --temp_dir /lscratch/29980476// -t 26 -r /data/MoCha/patidarr/ref/ucsc.hg19.fasta -i 965729/20170910/965729~122-R~J2-PDC~WES/965729~122-R~J2-PDC~WES.bwa.final.bam --interval /data/MoCha/patidarr/ref/design/Sureselect.v5.refseq.ensembl.noUTR.notfound.targetbp.hg19.bed --algo Haplotyper -d /data/MoCha/patidarr/ref/dbsnp_138.hg19.vcf --min_base_qual 20 --min_map_qual 30 /lscratch/29980476//965729~122-R~J2-PDC~WES.HC_DNASeq.raw.vcf">
##contig=<ID=chrM,length=16571,assembly=hg19>
##contig=<ID=chr1,length=249250621,assembly=hg19>
##contig=<ID=chr2,length=243199373,assembly=hg19>
##contig=<ID=chr3,length=198022430,assembly=hg19>
##contig=<ID=chr4,length=191154276,assembly=hg19>
##contig=<ID=chr5,length=180915260,assembly=hg19>
##contig=<ID=chr6,length=171115067,assembly=hg19>
##contig=<ID=chr7,length=159138663,assembly=hg19>
##contig=<ID=chr8,length=146364022,assembly=hg19>
##contig=<ID=chr9,length=141213431,assembly=hg19>
##contig=<ID=chr10,length=135534747,assembly=hg19>
##contig=<ID=chr11,length=135006516,assembly=hg19>
##contig=<ID=chr12,length=133851895,assembly=hg19>
##contig=<ID=chr13,length=115169878,assembly=hg19>
##contig=<ID=chr14,length=107349540,assembly=hg19>
##contig=<ID=chr15,length=102531392,assembly=hg19>
##contig=<ID=chr16,length=90354753,assembly=hg19>
##contig=<ID=chr17,length=81195210,assembly=hg19>
##contig=<ID=chr18,length=78077248,assembly=hg19>
##contig=<ID=chr19,length=59128983,assembly=hg19>
##contig=<ID=chr20,length=63025520,assembly=hg19>
##contig=<ID=chr21,length=48129895,assembly=hg19>
##contig=<ID=chr22,length=51304566,assembly=hg19>
##contig=<ID=chrX,length=155270560,assembly=hg19>
##contig=<ID=chrY,length=59373566,assembly=hg19>
##contig=<ID=chr1_gl000191_random,length=106433,assembly=hg19>
##contig=<ID=chr1_gl000192_random,length=547496,assembly=hg19>
##contig=<ID=chr4_ctg9_hap1,length=590426,assembly=hg19>
##contig=<ID=chr4_gl000193_random,length=189789,assembly=hg19>
##contig=<ID=chr4_gl000194_random,length=191469,assembly=hg19>
##contig=<ID=chr6_apd_hap1,length=4622290,assembly=hg19>
##contig=<ID=chr6_cox_hap2,length=4795371,assembly=hg19>
##contig=<ID=chr6_dbb_hap3,length=4610396,assembly=hg19>
##contig=<ID=chr6_mann_hap4,length=4683263,assembly=hg19>
##contig=<ID=chr6_mcf_hap5,length=4833398,assembly=hg19>
##contig=<ID=chr6_qbl_hap6,length=4611984,assembly=hg19>
##contig=<ID=chr6_ssto_hap7,length=4928567,assembly=hg19>
##contig=<ID=chr7_gl000195_random,length=182896,assembly=hg19>
##contig=<ID=chr8_gl000196_random,length=38914,assembly=hg19>
##contig=<ID=chr8_gl000197_random,length=37175,assembly=hg19>
##contig=<ID=chr9_gl000198_random,length=90085,assembly=hg19>
##contig=<ID=chr9_gl000199_random,length=169874,assembly=hg19>
##contig=<ID=chr9_gl000200_random,length=187035,assembly=hg19>
##contig=<ID=chr9_gl000201_random,length=36148,assembly=hg19>
##contig=<ID=chr11_gl000202_random,length=40103,assembly=hg19>
##contig=<ID=chr17_ctg5_hap1,length=1680828,assembly=hg19>
##contig=<ID=chr17_gl000203_random,length=37498,assembly=hg19>
##contig=<ID=chr17_gl000204_random,length=81310,assembly=hg19>
##contig=<ID=chr17_gl000205_random,length=174588,assembly=hg19>
##contig=<ID=chr17_gl000206_random,length=41001,assembly=hg19>
##contig=<ID=chr18_gl000207_random,length=4262,assembly=hg19>
##contig=<ID=chr19_gl000208_random,length=92689,assembly=hg19>
##contig=<ID=chr19_gl000209_random,length=159169,assembly=hg19>
##contig=<ID=chr21_gl000210_random,length=27682,assembly=hg19>
##contig=<ID=chrUn_gl000211,length=166566,assembly=hg19>
##contig=<ID=chrUn_gl000212,length=186858,assembly=hg19>
##contig=<ID=chrUn_gl000213,length=164239,assembly=hg19>
##contig=<ID=chrUn_gl000214,length=137718,assembly=hg19>
##contig=<ID=chrUn_gl000215,length=172545,assembly=hg19>
##contig=<ID=chrUn_gl000216,length=172294,assembly=hg19>
##contig=<ID=chrUn_gl000217,length=172149,assembly=hg19>
##contig=<ID=chrUn_gl000218,length=161147,assembly=hg19>
##contig=<ID=chrUn_gl000219,length=179198,assembly=hg19>
##contig=<ID=chrUn_gl000220,length=161802,assembly=hg19>
##contig=<ID=chrUn_gl000221,length=155397,assembly=hg19>
##contig=<ID=chrUn_gl000222,length=186861,assembly=hg19>
##contig=<ID=chrUn_gl000223,length=180455,assembly=hg19>
##contig=<ID=chrUn_gl000224,length=179693,assembly=hg19>
##contig=<ID=chrUn_gl000225,length=211173,assembly=hg19>
##contig=<ID=chrUn_gl000226,length=15008,assembly=hg19>
##contig=<ID=chrUn_gl000227,length=128374,assembly=hg19>
##contig=<ID=chrUn_gl000228,length=129120,assembly=hg19>
##contig=<ID=chrUn_gl000229,length=19913,assembly=hg19>
##contig=<ID=chrUn_gl000230,length=43691,assembly=hg19>
##contig=<ID=chrUn_gl000231,length=27386,assembly=hg19>
##contig=<ID=chrUn_gl000232,length=40652,assembly=hg19>
##contig=<ID=chrUn_gl000233,length=45941,assembly=hg19>
##contig=<ID=chrUn_gl000234,length=40531,assembly=hg19>
##contig=<ID=chrUn_gl000235,length=34474,assembly=hg19>
##contig=<ID=chrUn_gl000236,length=41934,assembly=hg19>
##contig=<ID=chrUn_gl000237,length=45867,assembly=hg19>
##contig=<ID=chrUn_gl000238,length=39939,assembly=hg19>
##contig=<ID=chrUn_gl000239,length=33824,assembly=hg19>
##contig=<ID=chrUn_gl000240,length=41933,assembly=hg19>
##contig=<ID=chrUn_gl000241,length=42152,assembly=hg19>
##contig=<ID=chrUn_gl000242,length=43523,assembly=hg19>
##contig=<ID=chrUn_gl000243,length=43341,assembly=hg19>
##contig=<ID=chrUn_gl000244,length=39929,assembly=hg19>
##contig=<ID=chrUn_gl000245,length=36651,assembly=hg19>
##contig=<ID=chrUn_gl000246,length=38154,assembly=hg19>
##contig=<ID=chrUn_gl000247,length=36422,assembly=hg19>
##contig=<ID=chrUn_gl000248,length=39786,assembly=hg19>
##contig=<ID=chrUn_gl000249,length=38502,assembly=hg19>
##fileDate=2024-07-04
##joinAdjacentSNPs_command=/data/MoCha/patidarr/ngs_pipeline/scripts/joinAdjacentSNPs_up.py -v 965729/20170910/965729~122-R~J2-PDC~WES/calls/965729~122-R~J2-PDC~WES.HC_DNASeq.raw.vcf -o /lscratch/33899073//HC.vcf.tmp 1 965729/20170910/965729~122-R~J2-PDC~WES/965729~122-R~J2-PDC~WES.bwa.final.bam /data/MoCha/patidarr/ref/ucsc.hg19.2bit
##platypusOptions={'assemblyRegionSize': 1500, 'trimReadFlank': 0, 'assembleBadReads': 1, 'bamFiles': ['965729/20170910/965729~122-R~J2-PDC~WES/965729~122-R~J2-PDC~WES.bam'], 'minVarDist': 9, 'trimSoftClipped': 1, 'minReads': 2, 'qualBinSize': 1, 'refFile': '/data/MoCha/patidarr/ref/ucsc.hg19.fasta', 'maxHaplotypes': 50, 'filterVarsByCoverage': 1, 'maxSize': 1500, 'originalMaxHaplotypes': 50, 'skipDifficultWindows': 0, 'parseNCBI': 0, 'skipRegionsFile': None, 'noCycles': 0, 'trimAdapter': 1, 'minPosterior': 5, 'assembleAll': 1, 'trimOverlapping': 1, 'filterDuplicates': 1, 'abThreshold': 0.001, 'minFlank': 10, 'bufferSize': 1000000, 'fileCaching': 0, 'useEMLikelihoods': 0, 'coverageSamplingLevel': 30, 'calculateFlankScore': 0, 'logFileName': 'log/platypus.965729.20170910.965729~122-R~J2-PDC~WES', 'nCPU': 32, 'filterReadsWithUnmappedMates': 1, 'qdThreshold': 10, 'maxVariants': 8, 'scThreshold': 0.95, 'filterReadsWithDistantMates': 1, 'maxReads': 100000000.0, 'badReadsWindow': 11, 'genIndels': 1, 'largeWindows': 0, 'minMapQual': 20, 'maxVarDist': 15, 'maxGOF': 30, 'rlen': 150, 'minGoodQualBases': 20, 'refCallBlockSize': 1000, 'countOnlyExactIndelMatches': 0, 'longHaps': 0, 'HLATyping': 0, 'filterReadPairsWithSmallInserts': 1, 'minBaseQual': 20, 'getVariantsFromBAMs': 1, 'genSNPs': 1, 'assemble': 0, 'assemblerKmerSize': 15, 'minVarFreq': 0.05, 'alignScoreFile': '', 'verbosity': 2, 'sourceFile': None, 'compressReads': 0, 'rmsmqThreshold': 40, 'filteredReadsFrac': 0.7, 'outputRefCalls': 0, 'badReadsThreshold': 15, 'hapScoreThreshold': 4, 'regions': ['/data/MoCha/patidarr/ref/design/Sureselect.v5.refseq.ensembl.noUTR.notfound.targetbp.hg19.bed'], 'sbThreshold': 0.001, 'output': '965729/20170910/965729~122-R~J2-PDC~WES/calls/965729~122-R~J2-PDC~WES.Platypus.raw.vcf', 'assembleBrokenPairs': 0, 'mergeClusteredVariants': 1, 'maxGenotypes': 1275, 'nInd': 1}
##reference=file:///data/MoCha/patidarr/ref/ucsc.hg19.fasta
##source=Platypus_Version_0.8.1.1
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	965729~122-R~J2-PDC~WES
chr1	762472	rs145493205	C	T	370.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.43;QD=28.52;SOR=3.767;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	762485	rs148989274	C	A	278.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.28;QD=30.98;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	782981	rs6594026	C	T	1169.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	792263	rs1044922	A	G	956.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.42;QD=25.18;SOR=2.073;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	792480	rs2905036	C	T	2570.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr1	866319	rs9988021	G	A	1528.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr1	866511	.	C	CCCCT	1596.73	.	AC=2;AF=1.00;AN=2;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	876499	rs4372192	A	G	978.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	877715	rs6605066	C	G	179.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	877831	rs6672356	T	C	112.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	879676	rs6605067	G	A	848.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	879687	rs2839	T	C	638.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	880238	rs3748592	A	G	5652.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr1	880639	rs35916504	TC	T	1634.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	882033	rs2272756	G	A	1954.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr1	883625	rs4970378	A	G	2752.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr1	884091	.	C	G	2840	.	AC=1;AF=0.500;AN=2;BRF=0.6;FR=0.5000;HP=1;HapScore=4;MGOF=6;MMLQ=28;MQ=59.88;NF=7;NR=53;PP=2840;QD=20;SC=CACCTGGCTGCACCCTGGTCA;SbPval=0.99;Source=Platypus;TC=164;TCF=47;TCR=117;TR=60;WE=884109;WS=884081;set=Platypus	GT:AD:AF:DP	0/1:104,60:0.37:164
chr1	884091	.	C	CACCCTGGTCCCCCTGGTCCCTTTGGCCCTGCACCTGGCTGG	6879.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;ClippingRankSum=0.000;DP=220;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.80;MQRankSum=-0.111;QD=37.39;ReadPosRankSum=-1.496;SOR=1.545;set=HC	GT:AD:AF:DP	1/1:2,182:0.99:184
chr1	884101	.	A	C	2962	.	AC=1;AF=0.500;AN=2;BRF=0.6;FR=0.5000;HP=4;HapScore=4;MGOF=6;MMLQ=28;MQ=59.86;NF=23;NR=48;PP=2962;QD=20;SC=CACCCTGGTCACCCTGGTCCT;SbPval=0.11;Source=Platypus;TC=134;TCF=31;TCR=103;TR=71;WE=884109;WS=884081;set=Platypus	GT:AD:AF:DP	1/0:63,71:0.53:134
chr1	886788	rs10465242	G	A	8539.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr1	886817	rs10465241	C	T	5385.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr1	887560	rs3748595	A	C	7957.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr1	887801	rs3828047	A	G	4115.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;MQ=59.99;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr1	888639	rs3748596	T	C	12876.77	.	AC=2;AF=1.00;AN=2;DB;DP=482;set=Intersection	GT:AD:AF:DP	1/1:0,480:1.00:480
chr1	888659	rs3748597	T	C	12263.77	.	AC=2;AF=1.00;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	1/1:0,462:1.00:462
chr1	889158	rs13303056	GA	CC	2244.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	889638	rs13303206	G	C	1168.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	892745	rs13303227	G	A	1479.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr1	894573	rs13303010	G	A	10464.77	.	AC=2;AF=1.00;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	1/1:2,374:0.99:376
chr1	897325	rs4970441	G	C	16356.77	.	AC=2;AF=1.00;AN=2;DB;DP=598;set=Intersection	GT:AD:AF:DP	1/1:0,585:1.00:585
chr1	897564	rs13303229	T	C	18037.77	.	AC=2;AF=1.00;AN=2;DB;DP=685;set=Intersection	GT:AD:AF:DP	1/1:0,656:1.00:656
chr1	898323	rs6605071	T	C	6796.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr1	900285	rs4970435	CA	TG	4494.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr1	900505	rs28705211	G	C	9407.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:1,339:1.00:340
chr1	909419	rs28548431	C	T	2482.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr1	909768	rs2340593	A	G	6749.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr1	911595	rs7417106	A	G	2448.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr1	912103	rs9803017	G	A	1861.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	912126	rs75056944	G	A	1625.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	912149	.	A	G	1160.77	.	AC=2;AF=1.00;AN=2;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.36;QD=48.37;SOR=6.439;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	914192	rs2340595	G	C	364.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	914876	rs13302983	T	C	4798.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr1	915227	rs13303355	A	G	4091.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr1	916590	rs28566954	G	A	10209.77	.	AC=2;AF=1.00;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	1/1:0,388:1.00:388
chr1	917640	rs41285816	G	A	1138.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr1	948846	rs3841266	T	TA	673.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	948870	rs4615788	C	G	1061.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	948921	rs15842	T	C	1577.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr1	949608	rs1921	G	A	8636.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:1,320:1.00:321
chr1	949654	rs8997	A	G	7899.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr1	949925	rs2799070	C	T	2301.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr1	955597	rs115173026	G	T	430.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	957898	rs2799064	G	T	2087.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:2,77:0.97:79
chr1	970549	rs70949545	TGG	T	950.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.30;QD=33.95;SOR=6.184;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	976481	.	CGGAGCGGGGCG	C	2987	.	AC=2;AF=1.00;AN=2;BRF=0.53;FR=1.0000;HP=8;HapScore=1;MGOF=32;MMLQ=24;MQ=59.85;NF=3;NR=0;PP=2987;QD=20;SC=GCCTGGGGGGCGGAGCGGGGC;SbPval=1.0;Source=Platypus;TC=5;TCF=5;TCR=0;TR=3;WE=976499;WS=976471;set=Platypus	GT:AD:AF:DP	1/1:2,3:0.60:5
chr1	976514	rs79290478	C	A	591.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.87;QD=18.49;SOR=3.545;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	977330	rs2799066	T	C	2748.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr1	977570	rs2710876	G	A	3014.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr1	981087	rs3128098	A	G	12451.77	.	AC=2;AF=1.00;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	1/1:0,451:1.00:451
chr1	981931	rs2465128	A	G	10005.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	1/1:0,383:1.00:383
chr1	982941	rs3128102	T	C	11746.77	.	AC=2;AF=1.00;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	1/1:0,426:1.00:426
chr1	982994	rs10267	T	C	12159.77	.	AC=2;AF=1.00;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	1/1:0,442:1.00:442
chr1	985443	rs374942603	AG	A	1499.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.681;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=4.367;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=36.58;ReadPosRankSum=0.888;SOR=1.250;set=HC	GT:AD:AF:DP	1/1:1,40:0.98:41
chr1	985450	.	G	A	1507.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.010;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;FS=8.765;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=35.06;ReadPosRankSum=1.241;SOR=1.280;set=HC	GT:AD:AF:DP	1/1:2,41:0.95:43
chr1	986443	rs2710887	C	T	10026.77	.	AC=2;AF=1.00;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	1/1:0,365:1.00:365
chr1	987200	rs9803031	C	T	4914.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr1	990280	rs4275402	C	T	1263.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	1007203	rs4633229	A	G	1274.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	1103150	rs61768480	G	A	1019.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	1115252	rs147431801	G	A	801.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	1196863	rs6659787	T	C	1138.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	1219464	.	C	T	779.77	.	AC=2;AF=1.00;AN=2;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.15;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	1229680	rs2477781	G	T	7841.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:24,283:0.92:307
chr1	1235200	rs7535337	C	T	961.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	1239339	rs11260584	T	G	3128.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:1,114:0.99:115
chr1	1242707	rs2274262	A	G	10655.77	.	AC=2;AF=1.00;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	1/1:0,405:1.00:405
chr1	1243896	rs61766198	C	T	51.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	1245368	rs11590283	G	A	3543.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr1	1246004	rs2296474	A	G	2314.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr1	1247494	rs12103	T	C	1451.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr1	1249187	rs12142199	G	A	9483.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	1/1:4,372:0.99:376
chr1	1254136	rs4970432	G	A	4865.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr1	1254436	rs1886773	A	G	14010.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.62;SOR=1.062;set=HC	GT:AD:AF:DP	1/1:0,314:1.00:314
chr1	1254443	rs1886772	G	A	13939.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.11;SOR=1.026;set=HC	GT:AD:AF:DP	1/1:0,316:1.00:316
chr1	1254841	rs10907179	C	G	2826.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr1	1260168	rs61766199	C	A	241.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.089;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=16.12;ReadPosRankSum=1.683;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:2,13:0.87:15
chr1	1262591	rs2296472	C	T	6587.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr1	1262966	rs307349	C	T	8786.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,327:1.00:327
chr1	1263144	rs307350	G	A	4817.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr1	1268847	rs307378	T	G	15110.77	.	AC=2;AF=1.00;AN=2;DB;DP=561;set=Intersection	GT:AD:AF:DP	1/1:1,558:1.00:559
chr1	1269554	rs307377	T	C	7737.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:2,294:0.99:296
chr1	1273116	rs307371	A	G	7636.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr1	1273278	rs307370	A	G	1137.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.39;QD=27.09;SOR=1.900;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr1	1275264	.	A	ACAGCCGCATGTCCCCCAGCAGCCCCCACAGACCCACCCG	3106.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;ClippingRankSum=0.000;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=34.14;ReadPosRankSum=-0.541;SOR=3.306;set=HC	GT:AD:AF:DP	1/1:3,88:0.97:91
chr1	1275291	.	G	A	1378	.	AC=1;AF=0.500;AN=2;BRF=0.38;FR=0.5000;HP=6;HapScore=1;MGOF=24;MMLQ=27;MQ=58.68;NF=5;NR=67;PP=1378;QD=19.6218223965;SC=AGCAGCCCCCGCAGACCCACC;SbPval=0.97;Source=Platypus;TC=103;TCF=16;TCR=87;TR=72;WE=1275299;WS=1275281;set=Platypus	GT:AD:AF:DP	1/0:31,72:0.70:103
chr1	1275329	.	TA	CG	1299	.	AC=1;AF=0.500;AN=2;BRF=0.37;FR=0.5000;HP=4;HapScore=2;MGOF=24;MMLQ=24;MQ=58.85;NF=0;NR=28;PP=1299;QD=48.3024241022;SC=CAGCAGCCCCTACAGACCCAC;SbPval=1.0;Source=Platypus;TC=60;TCF=15;TCR=45;TR=28;WE=1275338;WS=1275319;set=Platypus	GT:AD:AF:DP	1/0:32,28:0.47:60
chr1	1276973	rs145370195	G	GACAC	11599.73	.	AC=2;AF=1.00;AN=2;DB;DP=451;set=Intersection	GT:AD:AF:DP	1/1:2,432:1.00:434
chr1	1277533	rs307362	T	C	3869.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr1	1278237	rs307361	T	C	2606.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr1	1284490	rs150789461	G	A	1558.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	1288471	rs3766183	C	T	1425.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr1	1288583	rs3845295	C	G	3885.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr1	1288823	rs2296471	A	G	1257.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	1289367	rs140777846	CTG	C	12100.73	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr1	1289911	rs4970365	G	A	1536.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	1291159	rs201260508	GA	G	250.75	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.34;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	1293764	rs34841888	G	C	5161.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:3,196:0.98:199
chr1	1296691	rs2765025	C	G	6979.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr1	1310074	rs2765035	C	G	4450.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr1	1323078	rs12729599	A	G	1568.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr1	1323143	rs35654872	CCT	C	2924.73	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr1	1323945	rs111530797	GTC	G	338.73	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:5,15:0.75:20
chr1	1387667	rs1781144	C	G	14434.77	.	AC=2;AF=1.00;AN=2;DB;DP=529;set=Intersection	GT:AD:AF:DP	1/1:0,529:1.00:529
chr1	1395401	.	C	CTG	907.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.49;QD=43.23;SOR=1.508;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	1395402	.	CAG	TGC	1134	.	AC=2;AF=1.00;AN=2;BRF=0.47;FR=1.0000;HP=1;HapScore=1;MGOF=15;MMLQ=21;MQ=55.17;NF=5;NR=8;PP=1134;QD=92.1129134509;SC=GCTGAGCCTCCAGTGAACCCG;SbPval=0.46;Source=Platypus;TC=15;TCF=5;TCR=10;TR=13;WE=1395412;WS=1395392;set=Platypus	GT:AD:AF:DP	1/1:2,13:0.87:15
chr1	1395402	.	CAG	C	907.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.63;QD=43.23;SOR=1.508;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	1418531	rs819973	G	A	684.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	1458073	rs3118507	A	G	931.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	1460793	rs57929223	CT	C	109.75	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.144;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=1.824;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=0.756;QD=3.66;ReadPosRankSum=0.436;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:14,16:0.53:30
chr1	1551927	rs7418389	T	C	3363.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr1	1558792	rs12755088	T	C	1033.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	1560100	rs28441650	G	A	2956.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr1	1563789	rs74892851	C	A	5758.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr1	1564952	rs112177324	TG	T	2502.73	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr1	1566068	rs28730454	A	G	819.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:6,37:0.86:43
chr1	1571640	rs377058079	G	T	485.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.44;QD=32.38;SOR=5.549;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	1575616	rs80012316	T	C	1735.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr1	1580738	rs149767621	T	A	2858.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.273;ClippingRankSum=0.000;DB;DP=311;ExcessHet=3.0103;FS=1.387;MLEAC=1;MLEAF=0.500;MQ=47.67;MQRankSum=-7.379;QD=9.25;ReadPosRankSum=0.637;SOR=0.783;set=HC	GT:AD:AF:DP	0/1:162,147:0.48:309
chr1	1581558	rs117719933	C	T	364.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=37.37;QD=30.40;SOR=5.136;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	1581586	rs61774914	T	C	619.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=38.60;QD=32.62;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	1581713	rs76922129	A	C,G	3820.77	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=157;set=Intersection	GT:AF:DP	1/1:1.00:144
chr1	1581759	rs61774915	G	A	1145.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:246,78:0.24:324
chr1	1581881	rs61774916	T	C	3791.77	.	AC=1;AF=0.500;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	0/1:206,187:0.48:393
chr1	1581926	rs61774917	G	T	1572.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:101,77:0.43:178
chr1	1581958	rs200481124	T	C	729.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:49,30:0.38:79
chr1	1582106	rs79942991	T	C	7584.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr1	1582202	rs61774918	C	T	4266.77	.	AC=1;AF=0.500;AN=2;DB;DP=460;set=Intersection	GT:AD:AF:DP	0/1:250,209:0.46:459
chr1	1582794	rs4648754	C	A	735.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	1582841	rs61774920	A	G	254.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.213;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=50.07;MQRankSum=0.427;QD=13.41;ReadPosRankSum=0.909;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:11,8:0.42:19
chr1	1582844	rs61774921	G	T	254.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.720;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=2.029;MLEAC=1;MLEAF=0.500;MQ=49.66;MQRankSum=0.282;QD=14.15;ReadPosRankSum=1.315;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:11,7:0.39:18
chr1	1582880	rs61774922	G	C	478.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.872;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=4.300;MLEAC=1;MLEAF=0.500;MQ=45.37;MQRankSum=-0.659;QD=10.88;ReadPosRankSum=-0.720;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:20,24:0.55:44
chr1	1582961	rs61774949	G	C	2332.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:80,113:0.59:193
chr1	1583003	rs72468214	C	T	1349.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:133,80:0.38:213
chr1	1583088	.	A	G	372	.	AC=1;AF=0.500;AN=2;BRF=0.4;FR=0.5000;HP=2;HapScore=2;MGOF=14;MMLQ=24;MQ=49.09;NF=0;NR=19;PP=372;QD=21.4090111867;SC=GTCTTTGGCGAGATCACAGCT;SbPval=1.0;Source=Platypus;TC=55;TCF=8;TCR=47;TR=19;WE=1583096;WS=1583078;set=Platypus	GT:AD:AF:DP	0/1:36,19:0.35:55
chr1	1583276	.	TC	T	35.73	.	AC=1;AF=0.500;AN=2;DP=24;set=Intersection	GT:AD:AF:DP	0/1:19,4:0.17:23
chr1	1585597	rs7531938	A	G	3663.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr1	1585642	rs3936009	G	T	5559.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:2,215:0.99:217
chr1	1586752	rs11486023	T	C	2601.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr1	1588670	rs61774958	G	A	535.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:58,28:0.33:86
chr1	1588717	rs61774959	G	A	481.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.588;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=3.773;MLEAC=1;MLEAF=0.500;MQ=56.87;MQRankSum=-1.284;QD=3.01;ReadPosRankSum=3.315;SOR=0.387;set=HC	GT:AD:AF:DP	0/1:124,36:0.23:160
chr1	1588737	rs61776760	C	T	1082.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.773;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=5.751;MLEAC=1;MLEAF=0.500;MQ=54.92;MQRankSum=-0.198;QD=5.61;ReadPosRankSum=2.345;SOR=0.361;set=HC	GT:AD:AF:DP	0/1:155,38:0.20:193
chr1	1588743	rs61776761	A	T	1082.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.464;ClippingRankSum=0.000;DB;DP=208;ExcessHet=3.0103;FS=4.389;MLEAC=1;MLEAF=0.500;MQ=54.55;MQRankSum=-0.033;QD=5.23;ReadPosRankSum=1.812;SOR=0.398;set=HC	GT:AD:AF:DP	0/1:168,39:0.19:207
chr1	1588744	rs79724854	AGCG	A	1067.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.498;ClippingRankSum=0.000;DB;DP=217;ExcessHet=3.0103;FS=4.340;MLEAC=1;MLEAF=0.500;MQ=54.40;MQRankSum=0.131;QD=4.94;ReadPosRankSum=1.905;SOR=0.408;set=HC	GT:AD:AF:DP	0/1:177,39:0.18:216
chr1	1599812	rs12729295	C	T	1062.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.653;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=70.620;MLEAC=1;MLEAF=0.500;MQ=43.96;MQRankSum=-7.584;QD=12.96;ReadPosRankSum=-0.611;SOR=7.383;set=HC	GT:AD:AF:DP	0/1:41,41:0.50:82
chr1	1599888	rs2072923	A	G	2513.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:53,115:0.68:168
chr1	1602787	rs4639697	G	T	435.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	1608229	rs143080014	C	T	56.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.00;QD=18.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	1644836	rs2179382	G	A	1100.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:38,48:0.56:86
chr1	1644908	rs2179383	C	T	1588.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.34;QD=29.42;SOR=0.767;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr1	1645050	rs77869096	C	T	1743.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.33;QD=26.83;SOR=1.539;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr1	1645113	rs201419561	T	C	107.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=37.46;QD=35.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	1645115	rs78711691	C	T	107.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=37.46;QD=35.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	1645190	rs113713941	T	C	126.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=38.75;QD=25.38;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	1645838	rs33938712	CA	C	630.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=33.00;QD=35.04;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	1646074	rs201159473	A	G	107.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.67;QD=35.76;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	1646077	rs76473385	G	T	107.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.67;QD=35.76;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	1646113	rs199941510	G	C	104.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.75;QD=26.01;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	1646231	rs200994957	T	C	466.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=42.43;SOR=4.977;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	1646236	rs202149796	C	T	466.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=42.43;SOR=4.977;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	1646574	rs760925	T	C	44.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=37.22;QD=22.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr1	1646657	rs760926	T	C	208.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=38.93;QD=29.83;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	1646789	rs760927	T	C	249.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.11;QD=27.75;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	1647722	rs114460890	G	T	1035.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.089;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=3.016;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.28;ReadPosRankSum=-3.763;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:51,27:0.35:78
chr1	1647725	rs368680882	GT	AG	1065.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.344;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=1.243;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.00;ReadPosRankSum=-3.896;SOR=0.450;set=HC	GT:AD:AF:DP	0/1:52,30:0.37:82
chr1	1647729	.	CA	TG	1162.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.434;ClippingRankSum=0.000;DP=93;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.21;ReadPosRankSum=-3.274;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:56,32:0.36:88
chr1	1647745	rs72634830	G	A	2062.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.863;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=4.729;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.87;ReadPosRankSum=-2.226;SOR=0.376;set=HC	GT:AD:AF:DP	0/1:77,53:0.41:130
chr1	1647753	rs74045984	C	T	2290.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.219;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=5.326;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.37;ReadPosRankSum=-2.483;SOR=0.374;set=HC	GT:AD:AF:DP	0/1:83,66:0.44:149
chr1	1647778	rs72901773	C	G	2407.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:119,120:0.50:239
chr1	1647814	rs72901775	T	C	4098.77	.	AC=1;AF=0.500;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	0/1:206,188:0.48:394
chr1	1647871	rs72909014	T	C	5696.77	.	AC=1;AF=0.500;AN=2;DB;DP=549;MQ=60.02;set=Intersection	GT:AD:AF:DP	0/1:266,274:0.51:540
chr1	1647893	rs144636354	C	CTTTCTT	9084.73	.	AC=1;AF=0.500;AN=2;DB;DP=504;set=Intersection	GT:AD:AF:DP	0/1:226,234:0.51:460
chr1	1647928	rs1883424	A	G	3520.77	.	AC=1;AF=0.500;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	0/1:182,170:0.48:352
chr1	1647968	rs146207119	C	CAT	3742.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.073;ClippingRankSum=0.000;DB;DP=217;ExcessHet=3.0103;FS=0.558;MLEAC=1;MLEAF=0.500;MQ=59.63;MQRankSum=-3.177;QD=18.17;ReadPosRankSum=1.743;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:107,99:0.48:206
chr1	1647971	rs77394327	G	A	3603.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.247;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=2.719;MLEAC=1;MLEAF=0.500;MQ=59.53;MQRankSum=-3.454;QD=18.29;ReadPosRankSum=1.742;SOR=0.910;set=HC	GT:AD:AF:DP	0/1:105,92:0.47:197
chr1	1647983	rs74429813	T	A	2952.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.181;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=1.454;MLEAC=1;MLEAF=0.500;MQ=59.14;MQRankSum=-3.499;QD=20.51;ReadPosRankSum=-0.310;SOR=0.845;set=HC	GT:AD:AF:DP	0/1:70,74:0.51:144
chr1	1647990	rs76519969	C	T	2337.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.557;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.794;MLEAC=1;MLEAF=0.500;MQ=58.80;MQRankSum=-3.793;QD=19.81;ReadPosRankSum=-0.207;SOR=0.877;set=HC	GT:AD:AF:DP	0/1:59,59:0.50:118
chr1	1648002	rs77107184	C	T	1726.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.464;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.51;MQRankSum=-3.802;QD=18.18;ReadPosRankSum=-0.978;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:47,48:0.51:95
chr1	1648018	rs79409185	C	T	1276.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.900;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=2.864;MLEAC=1;MLEAF=0.500;MQ=57.87;MQRankSum=-4.206;QD=17.25;ReadPosRankSum=-1.100;SOR=1.314;set=HC	GT:AD:AF:DP	0/1:38,36:0.49:74
chr1	1648027	rs61776857	T	C	2077.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr1	1650657	.	C	G	483	.	AC=1;AF=0.500;AN=2;BRF=0.27;FR=0.5000;HP=2;HapScore=2;MGOF=31;MMLQ=24;MQ=59.57;NF=25;NR=6;PP=483;QD=16.7022971789;SC=CTTTCAGCTACAGTTTGCTTT;SbPval=0.55;Source=Platypus;TC=73;TCF=59;TCR=14;TR=31;WE=1650665;WS=1650655;set=Platypus	GT:AD:AF:DP	0/1:42,31:0.42:73
chr1	1650787	rs1137003	T	C	6152.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.185;ClippingRankSum=0.000;DB;DP=362;ExcessHet=3.0103;FS=0.385;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.04;ReadPosRankSum=1.634;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:202,159:0.44:361
chr1	1650797	rs1059830	A	G	6249.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.350;ClippingRankSum=0.000;DB;DP=361;ExcessHet=3.0103;FS=0.799;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.36;ReadPosRankSum=0.937;SOR=0.750;set=HC	GT:AD:AF:DP	0/1:199,161:0.45:360
chr1	1650801	rs1137004	T	C	6271.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.678;ClippingRankSum=0.000;DB;DP=364;ExcessHet=3.0103;FS=0.795;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.28;ReadPosRankSum=0.475;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:198,165:0.45:363
chr1	1650807	rs1137005	T	C	4145.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.318;ClippingRankSum=0.000;DB;DP=355;ExcessHet=3.0103;FS=1.252;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.68;ReadPosRankSum=0.624;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:166,189:0.53:355
chr1	1650832	rs72909030	A	G	4203.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.949;ClippingRankSum=0.000;DB;DP=408;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.35;ReadPosRankSum=-0.765;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:212,194:0.48:406
chr1	1650845	rs1059831	G	A	4769.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.511;ClippingRankSum=0.000;DB;DP=425;ExcessHet=3.0103;FS=0.517;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.30;ReadPosRankSum=-0.076;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:199,223:0.53:422
chr1	1650920	rs36191908	G	A	5563.77	.	AC=1;AF=0.500;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	0/1:215,166:0.44:381
chr1	1650938	.	CGG	C	4928.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.655;ClippingRankSum=0.000;DP=328;ExcessHet=3.0103;FS=2.547;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.60;ReadPosRankSum=0.771;SOR=0.842;set=HC	GT:AD:AF:DP	0/1:184,132:0.42:316
chr1	1650942	.	A	AAG	2292.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.067;ClippingRankSum=0.000;DP=318;ExcessHet=3.0103;FS=1.966;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.69;ReadPosRankSum=0.573;SOR=0.814;set=HC	GT:AD:AF:DP	0/1:180,118:0.40:298
chr1	1650960	rs72634834	G	A	3946.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.125;ClippingRankSum=0.000;DB;DP=250;ExcessHet=3.0103;FS=2.918;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.58;ReadPosRankSum=-1.864;SOR=0.906;set=HC	GT:AD:AF:DP	0/1:136,102:0.43:238
chr1	1650967	rs75384210	T	C	3608.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.241;ClippingRankSum=0.000;DB;DP=228;ExcessHet=3.0103;FS=2.386;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.71;ReadPosRankSum=-1.315;SOR=0.885;set=HC	GT:AD:AF:DP	0/1:126,90:0.42:216
chr1	1650996	rs74223875	T	C	1648.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.614;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=3.449;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=-1.097;QD=12.49;ReadPosRankSum=0.310;SOR=1.071;set=HC	GT:AD:AF:DP	0/1:82,50:0.38:132
chr1	1651003	rs76941027	G	A	1535.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.036;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=2.909;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=-1.078;QD=14.63;ReadPosRankSum=0.746;SOR=1.079;set=HC	GT:AD:AF:DP	0/1:66,39:0.37:105
chr1	1651047	.	C	T	1467	.	AC=1;AF=0.500;AN=2;BRF=0.24;FR=0.5000;HP=2;HapScore=4;MGOF=106;MMLQ=26;MQ=59.34;NF=1;NR=38;PP=1467;QD=38.5069541679;SC=TCTCCAACTTCAGGCATCTTT;SbPval=0.97;Source=Platypus;TC=84;TCF=8;TCR=76;TR=39;WE=1651086;WS=1651037;set=Platypus	GT:AD:AF:DP	0/1:45,39:0.46:84
chr1	1651077	rs70937183	C	CTCGCTCTGTCACCCAGGCT	322.75	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	1653004	rs36039898	T	C	4269.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr1	1653028	rs16825265	C	T	5668.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr1	1654013	rs74045997	C	G	323.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	1654038	rs61777494	G	A	981.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	1654058	rs61777495	C	T	2491.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.09;QD=48.86;SOR=3.788;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	1654064	rs200615789	A	T	2771.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.48;QD=46.20;SOR=3.841;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr1	1654065	rs35174499	AGCG	A	2763.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr1	1663851	rs2294486	G	C	4324.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.68;SOR=0.842;set=HC	GT:AD:AF:DP	1/1:0,99:1.00:99
chr1	1663861	rs2294487	G	A	4293.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.81;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,98:1.00:98
chr1	1664019	rs2294488	T	C	851.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	1666175	rs61777509	C	T	755.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.046;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=20.728;MLEAC=1;MLEAF=0.500;MQ=44.29;MQRankSum=4.516;QD=14.53;ReadPosRankSum=3.234;SOR=0.020;set=HC	GT:AD:AF:DP	0/1:14,38:0.73:52
chr1	1666251	rs77655487	G	A	1557.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.292;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=23.038;MLEAC=1;MLEAF=0.500;MQ=45.67;MQRankSum=-3.854;QD=12.56;ReadPosRankSum=0.957;SOR=2.235;set=HC	GT:AD:AF:DP	0/1:56,68:0.55:124
chr1	1666338	rs2072924	G	A	2827.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr1	1669646	rs201497363	ACT	A	924.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	1669748	rs115554296	A	G	2719.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr1	1669964	rs369037660	G	A	359.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.92;QD=29.98;SOR=5.136;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	1670570	rs150051592	T	C	177.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.20;QD=29.64;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	1684347	rs150880809	C	CCCT	6523.73	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:19,162:0.90:181
chr1	1684472	rs7407	C	T	7057.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;MQ=60.03;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr1	1685213	rs2072928	C	G	1396.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	1685921	rs139385870	TCCCTGGGACCGAAGTCGCCCCA	T	5217.73	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:1,119:0.99:120
chr1	1688192	rs2281173	A	G	2963.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr1	1688469	rs4648623	C	G	847.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	1690126	rs79655042	A	AAC	2491.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.96;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr1	1690793	rs2235538	G	A	1078.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	1696659	rs5021859	A	G	670.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	1720667	rs78079274	G	A	4946.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr1	1724503	rs33952351	C	CA	206.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.991;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=15.90;ReadPosRankSum=-0.135;SOR=0.593;set=HC	GT:AD:AF:DP	1/1:1,12:0.92:13
chr1	1737895	rs77354509	G	A	7717.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.87;SOR=0.815;set=HC	GT:AD:AF:DP	1/1:0,172:1.00:172
chr1	1737900	rs17363334	C	T	7766.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.13;SOR=0.812;set=HC	GT:AD:AF:DP	1/1:0,176:1.00:176
chr1	1823922	rs6688000	A	G	11051.77	.	AC=2;AF=1.00;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	1/1:2,419:1.00:421
chr1	1846582	rs2748987	A	G	1209.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr1	1846765	rs2247560	G	A	4628.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr1	1847856	rs2748986	G	T	6125.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr1	1848109	rs2803296	G	C	7162.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr1	1849529	rs28640257	A	G	2612.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr1	1850428	rs2295363	A	G	2006.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr1	1850627	.	CAGCGGCAGG	C	368.74	.	AC=2;AF=1.00;AN=2;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	1853615	rs113294876	T	TCTGA	1085.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	1854109	rs2803348	A	G	5152.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr1	1854321	rs2250833	A	G	710.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	1855450	rs28423370	A	G	1360.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	1858309	rs941530	T	C	10087.77	.	AC=2;AF=1.00;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	1/1:0,378:1.00:378
chr1	1859296	rs2748984	T	C	2564.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr1	1860087	rs2748983	C	T	1523.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr1	1861582	rs2803295	C	T	4070.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr1	1870210	rs2803323	G	A	1458.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	1871979	rs2748982	G	A	1119.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	1873453	rs2748981	G	A	1030.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	1873514	rs2803326	A	G	1958.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr1	1873525	rs2803327	T	C	1953.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr1	1873697	rs2748980	G	A	1726.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.28;SOR=1.730;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	1873697	.	GAG	AAC	1329	.	AC=2;AF=1.00;AN=2;BRF=0.54;FR=1.0000;HP=5;HapScore=1;MGOF=1;MMLQ=27;MQ=60.0;NF=7;NR=20;PP=1329;QD=51.2025138838;SC=CCAAGCCCCCGAGAGGTGCTC;SbPval=0.56;Source=Platypus;TC=27;TCF=7;TCR=20;TR=27;WE=1873707;WS=1873687;set=Platypus	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	1873699	rs2748979	G	C	1726.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.28;SOR=1.730;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	1875858	rs2803336	CA	GG	9573.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr1	1878628	rs2803341	C	T	575.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	1886501	.	C	CGGCTCACACCGGAAGTGA	125	.	AC=1;AF=0.500;AN=2;BRF=0.34;FR=0.9784;HP=3;HapScore=2;MGOF=15;MMLQ=21;MQ=65.69;NF=5;NR=4;PP=125;QD=25.0;SC=ACCGGAAGTGCGGCTCACACC;SbPval=0.59;Source=Platypus;TC=14;TCF=8;TCR=6;TR=9;WE=1886509;WS=1886491;set=Platypus	GT:AD:AF:DP	1/0:5,9:0.64:14
chr1	1886519	.	C	CGGCTCACACCGGAAGTGAGGCTCACACCGGAAGTGA	819.73	.	AC=2;AF=1.00;AN=2;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=65.57;QD=81.97;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	1887019	rs28548017	A	G	9322.77	.	AC=2;AF=1.00;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	1/1:0,330:1.00:330
chr1	1920434	rs144487103	TA	T	60.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.930;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=2.497;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.80;ReadPosRankSum=-0.470;SOR=0.904;set=HC	GT:AD:AF:DP	0/1:57,19:0.25:76
chr1	1956362	rs2376805	G	A	10629.77	.	AC=2;AF=1.00;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	1/1:2,403:1.00:405
chr1	1957037	rs2229110	T	C	13516.77	.	AC=2;AF=1.00;AN=2;DB;DP=498;set=Intersection	GT:AD:AF:DP	1/1:0,497:1.00:497
chr1	1960926	rs28581504	T	C	967.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	1987803	rs2803309	G	A	1325.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	1987993	rs12184	T	C	4229.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr1	1991014	rs1878745	A	G	7111.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr1	1991123	rs1878746	G	A	5653.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr1	1991173	rs2247923	A	G	2676.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr1	2005740	rs2459986	T	C	1478.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.762;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.47;ReadPosRankSum=0.399;SOR=0.725;set=HC	GT:AD:AF:DP	1/1:2,61:0.97:63
chr1	2106840	rs12135175	T	C	1767.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:1,71:0.99:72
chr1	2106896	rs12135178	T	C	863.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	2126139	rs6662296	C	G	212.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.60;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	2144982	rs2480714	G	T	3772.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr1	2234903	rs2256178	C	T	2799.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:1,101:0.99:102
chr1	2235662	rs2645073	G	A	2999.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.11;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr1	2235672	rs2843159	C	T	3499.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.23;SOR=0.863;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr1	2252759	rs35513983	A	G	277.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	2255633	rs3737639	G	A	2436.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:2,91:0.98:93
chr1	2286947	rs1039100	A	G	2476.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.779;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.80;ReadPosRankSum=1.707;SOR=0.288;set=HC	GT:AD:AF:DP	1/1:1,95:0.99:96
chr1	2323041	rs77804600	T	C	1070.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:2,42:0.95:44
chr1	2328714	rs2645081	A	G	1202.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr1	2330738	.	TAAAAC	T	1435.73	.	AC=2;AF=1.00;AN=2;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	2337032	rs1129171	C	T	786.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:2,29:0.94:31
chr1	2340200	rs2494598	T	C	5728.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr1	2409892	rs12727342	A	G	2414.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr1	2411451	rs10797428	A	G	4462.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:2,169:0.99:171
chr1	2418935	rs10910082	C	T	898.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	2420590	rs10752744	T	C	1494.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	2420913	rs6668720	A	G	2356.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr1	2422614	rs2477699	G	A	1992.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr1	2426766	rs3001347	A	G	1046.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	2428874	rs2477706	T	C	1318.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.61;SOR=5.486;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr1	2433900	rs12736998	C	T	2534.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:1,96:0.99:97
chr1	2444414	rs7535528	G	A	9592.77	.	AC=2;AF=1.00;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	1/1:3,364:0.99:367
chr1	2452569	rs2985862	T	C	2590.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr1	2460944	.	CGCG	C	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.18;ReadPosRankSum=-1.383;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:2,2:0.50:4
chr1	2461547	rs377502240	T	C	2243.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr1	2518186	rs10752746	A	G	308.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	2522392	rs2296443	G	A	743.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	2527678	rs2260976	A	G	2129.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr1	2528133	rs2843401	T	C	9342.77	.	AC=2;AF=1.00;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	1/1:2,358:0.99:360
chr1	2530341	rs34705971	A	AG	665.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	2560735	rs4648657	A	G	2628.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr1	2560818	.	CCAG	C	171.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.527;ClippingRankSum=0.000;DP=204;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.93;ReadPosRankSum=1.212;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:168,17:0.09:185
chr1	2560882	rs4648658	G	A	6488.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr1	2560903	rs4648659	T	G	5965.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:1,146:0.99:147
chr1	2573199	rs4648662	A	G	4568.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr1	2700117	rs4648502	C	G	1821.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:1,71:0.99:72
chr1	2984087	rs2297829	C	A	8035.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr1	2985885	rs7413494	C	G	978.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.19;SOR=1.209;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	3310928	rs145881072	C	CCG	315.75	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	3328358	rs870124	T	C	22191.77	.	AC=2;AF=1.00;AN=2;DB;DP=813;set=Intersection	GT:AD:AF:DP	1/1:0,810:1.00:810
chr1	3328659	rs2493292	C	T	14388.77	.	AC=2;AF=1.00;AN=2;DB;DP=528;set=Intersection	GT:AD:AF:DP	1/1:1,518:1.00:519
chr1	3329384	rs2493291	C	T	6648.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr1	3350134	rs10752734	T	C	2153.73	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:5,74:0.94:79
chr1	3383593	rs3893316	G	T	937.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	3383665	rs7550948	G	A	2917.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr1	3383898	rs6424078	A	G	3177.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr1	3385250	rs1417897	C	A	727.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	3385330	rs2493249	T	C	2447.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr1	3389727	rs2185639	C	T	11514.77	.	AC=2;AF=1.00;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	1/1:0,446:1.00:446
chr1	3390238	rs2493323	T	A	3560.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr1	3394456	rs4638054	T	C	2209.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr1	3394640	rs4422946	A	G	3870.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr1	3394674	rs4534324	T	C	2601.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr1	3395039	rs10797395	G	A	9249.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chr1	3395229	rs4553117	T	C	943.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	3395973	rs70938094	ACC	A	5555.73	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr1	3396609	rs881978	C	T	646.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	3397188	rs2487677	T	C	1894.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr1	3414105	rs10909951	C	T	4333.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr1	3416449	rs7553399	C	A	2745.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr1	3417131	rs2821031	A	G	4687.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr1	3417960	rs4648507	G	A	3878.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr1	3418565	.	T	C	1533	.	AC=2;AF=1.00;AN=2;BRF=0.57;FR=1.0000;HP=3;HapScore=1;MGOF=35;MMLQ=24;MQ=54.69;NF=20;NR=70;PP=1533;QD=17.4196801394;SC=GGGCTCCTGGTGAGTGTGCCC;SbPval=0.52;Source=Platypus;TC=90;TCF=20;TCR=70;TR=90;WE=3418573;WS=3418555;set=Platypus	GT:AD:AF:DP	1/1:0,90:1.00:90
chr1	3440647	rs2794322	T	C	989.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	3496328	rs2821051	T	C	656.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	3496479	rs2794340	T	C	2121.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr1	3511934	rs7513275	A	G	4446.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr1	3512188	rs7554061	C	T	1699.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr1	3518944	rs7521546	T	C	1875.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr1	3519179	rs2794330	C	T	4043.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr1	3527944	rs10797402	C	G	4252.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr1	3528082	rs10797403	T	C	4176.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr1	3545175	rs147637374	GTTCTGGGAGCTCCTCCCCC	G	1662.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	3548136	rs2760321	T	C	4360.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr1	3563512	rs34514629	GC	G	1473.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	3566625	rs145464993	AGCAGGCTG	A	2777.73	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr1	3566706	rs2251098	G	A	331.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	3607520	rs3765730	G	A	4751.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr1	3638593	rs61747511	G	A	18291.77	.	AC=2;AF=1.00;AN=2;DB;DP=698;set=Intersection	GT:AD:AF:DP	1/1:0,695:1.00:695
chr1	3638674	rs1801174	C	T	18795.77	.	AC=2;AF=1.00;AN=2;DB;DP=721;set=Intersection	GT:AD:AF:DP	1/1:0,713:1.00:713
chr1	3640085	rs6424091	C	G	1146.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.49;QD=27.30;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr1	3640134	rs35939665	TCTGC	T	486.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	3644349	rs2181486	A	G	2959.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr1	3644374	rs2146657	A	G	1995.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr1	3645835	rs2254530	C	A	1936.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.02;SOR=1.828;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	3645844	rs2096224	G	A	2150.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.58;SOR=1.791;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr1	3646137	rs11589885	C	T	6821.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr1	3646192	rs1885867	G	A	9859.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr1	3646214	rs1885866	T	C	9624.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr1	3646291	rs1885865	G	A	4822.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr1	3647962	rs1745813	T	C	1304.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	3659657	rs2298222	G	A	4677.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr1	3662845	rs3737589	A	G	519.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	3669201	rs10797410	A	G	18164.77	.	AC=2;AF=1.00;AN=2;DB;DP=418;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.20;SOR=0.811;set=HC	GT:AD:AF:DP	1/1:0,411:1.00:411
chr1	3669205	rs10910021	C	G	18016.77	.	AC=2;AF=1.00;AN=2;DB;DP=405;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.15;SOR=0.803;set=HC	GT:AD:AF:DP	1/1:0,399:1.00:399
chr1	3672156	rs4648555	C	A	2755.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr1	3673496	rs4648405	T	G	431.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	3677933	rs1181883	T	C	3425.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr1	3679139	rs1181879	T	C	1396.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.08;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	3679146	rs4648556	G	A	1396.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.65;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	3679307	rs4648557	T	C	178.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	3679775	rs10910024	C	T	1822.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr1	3703337	rs2368537	G	C	887.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	3703589	rs138729139	C	T	7603.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr1	3743433	rs5772126	T	TG	2665.73	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr1	3746583	rs2275828	G	T	2778.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.10;SOR=1.376;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr1	3746589	rs2275826	C	G	2611.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.82;SOR=1.453;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	3747580	rs6424058	C	T	352.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	3747603	rs6413779	T	C	526.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	3753136	rs2275824	A	T	4853.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr1	3755675	rs1891941	T	C	16483.77	.	AC=2;AF=1.00;AN=2;DB;DP=613;set=Intersection	GT:AD:AF:DP	1/1:0,603:1.00:603
chr1	3756120	rs1539649	A	G	2367.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr1	3759784	rs10797347	A	G	2566.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:1,98:0.99:99
chr1	3759937	rs10909801	A	G	166.31	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.593;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=18.48;ReadPosRankSum=-1.732;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:2,7:0.78:9
chr1	3759940	rs34104489	A	AT	157.27	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.862;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=17.47;ReadPosRankSum=-1.732;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:2,7:0.78:9
chr1	3761479	rs2275822	C	T	2493.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr1	3761650	rs2275821	A	G	1184.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	3765095	.	C	CAA	99.19	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=19.84;ReadPosRankSum=1.282;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:1,4:0.80:5
chr1	3775454	rs4376673	C	G	2785.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr1	3782608	rs10909809	C	T	719.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	3788978	.	G	GA	167.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.984;ClippingRankSum=0.000;DP=78;ExcessHet=3.0103;FS=7.698;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.589;QD=2.33;ReadPosRankSum=0.136;SOR=1.751;set=HC	GT:AD:AF:DP	0/1:51,21:0.29:72
chr1	3807593	rs4274008	G	C	6325.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr1	3816894	rs79746978	C	T	470.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.15;SOR=3.500;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	4830170	.	G	T	670.77	.	AC=2;AF=1.00;AN=2;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	4847594	rs11805709	C	T	1787.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:1,64:0.98:65
chr1	4847845	rs4654460	G	A	8208.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr1	5623965	rs9439613	C	T	1256.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	5922687	rs139449567	G	A	820.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	5937168	rs3747992	G	A	2757.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr1	5937391	rs3747989	C	T	6073.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr1	5937413	rs3747988	A	C	4140.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr1	5939544	rs11121915	T	G	8566.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr1	5948677	rs2282281	G	A	4841.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr1	5964991	rs3737234	T	C	1662.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr1	6027167	rs875574	C	A	290.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	6027252	rs875573	A	G	982.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	6029086	rs34702999	CA	C	279.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:2,20:0.91:22
chr1	6038583	rs4908639	G	C	1418.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	6100458	rs12566866	G	A	3384.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr1	6145365	rs2294936	A	G	1254.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	6150637	rs12081978	C	T	1031.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	6155332	rs1555144	T	C	1036.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	6157282	rs749434	C	T	1184.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:2,43:0.96:45
chr1	6157434	rs2311802	C	T	6063.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr1	6158562	rs2229002	A	G	6792.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr1	6162054	rs6696489	T	C	1613.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr1	6186961	rs2746060	A	G	854.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	6239937	rs70981314	C	CG	4069.73	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr1	6305292	rs61760836	C	A	2266.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:1,81:0.99:82
chr1	6305303	rs61760837	C	A	2628.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr1	6309319	rs1883608	C	G	206.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.85;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	6313938	rs12735670	C	T	3140.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr1	6314242	.	C	T	3490.77	.	AC=2;AF=1.00;AN=2;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr1	6314349	rs6696630	A	G	1302.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	6314479	rs12740426	C	T	2301.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr1	6314822	rs11590458	T	C	4994.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr1	6453520	rs76483502	C	CG	523.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	6473294	rs7529205	A	G	3335.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr1	6500604	.	C	CG	42.70	.	AC=2;AF=1.00;AN=2;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.35;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr1	6500610	rs200454180	AC	A	42.70	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.70;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,1:1.00:1
chr1	6500626	.	C	CG	179	.	AC=2;AF=1.00;AN=2;BRF=0.43;FR=1.0000;HP=8;HapScore=2;MGOF=25;MMLQ=24;MQ=56.12;NF=2;NR=2;PP=179;QD=51.0;SC=GTACAGGGGGCGGGCCTACAG;SbPval=0.68;Source=Platypus;TC=4;TCF=2;TCR=2;TR=4;WE=6500634;WS=6500616;set=Platypus	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	6508625	rs149033367	A	G	584.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.98;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	6508633	rs112292564	G	T	560.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.05;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	6508712	rs77656032	T	C	362.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	6508872	rs138198721	C	T	357.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	6511582	rs9434774	A	G	1246.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	6521150	rs2986758	A	C	7710.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr1	6526008	rs3007416	A	G	1732.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.25;SOR=0.754;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr1	6526183	rs3007417	G	A	3605.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr1	6526202	rs45616733	CCGTGCTCT	C	3535.73	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr1	6526240	rs45542640	GCGCC	G	1707.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	6527745	rs9435269	C	T	3478.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr1	6529188	rs62639695	C	T	3595.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.849;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=3.342;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.44;ReadPosRankSum=-0.574;SOR=0.488;set=HC	GT:AD:AF:DP	1/1:1,135:0.99:136
chr1	6529443	rs730600	A	G	9479.77	.	AC=2;AF=1.00;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	1/1:0,356:1.00:356
chr1	6530965	rs111312565	C	CG	2835.73	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr1	6533393	rs61741379	G	C	3562.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr1	6534002	rs74049586	C	T	107.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	6534021	rs58549010	C	T	171.90	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	6534781	rs2986751	G	A	1419.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr1	6557009	rs3007430	A	C	6051.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:2,224:0.99:226
chr1	6579653	rs41278014	G	C	870.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	6586070	rs7548042	C	T	6372.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr1	6593532	rs11122083	G	A	2268.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr1	6609563	rs34630031	CAT	C	861.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	6609792	rs34858690	G	GT	9975.73	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr1	6609851	rs10864622	A	G	4585.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr1	6614230	rs10864625	G	A	1611.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	6614391	rs6693391	A	C	1658.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	6614415	rs6693400	A	G	1670.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	6635231	rs10864628	A	G	8372.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chr1	6637171	rs12040340	G	A	2366.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:1,86:0.99:87
chr1	6646959	rs3833475	GCCTGCCTTC	G	11069.73	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr1	6679848	rs2072948	C	T	857.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	6681375	rs6695474	C	T	2249.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr1	6681744	rs3747994	C	T	2302.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr1	6685442	rs12746591	A	G	264.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	6690140	rs742394	A	G	328.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	6694927	rs2294532	C	T	248.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	6695802	rs6577583	A	G	4435.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr1	6704635	rs200458	A	G	5258.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:2,204:0.99:206
chr1	6713114	rs2235564	C	T	1121.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	6845564	rs192783463	G	A	592.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	6845577	.	CGAG	C	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.132;ClippingRankSum=0.000;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.65;ReadPosRankSum=-0.321;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:18,3:0.14:21
chr1	6866978	rs660880	G	A	1001.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	7289374	.	GA	G	40.70	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.35;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr1	7289606	rs6659573	T	G	286.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.97;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	7289612	rs6659575	T	G	414.77	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=51.85;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	7289619	rs6577423	G	A	446.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.23;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	7624855	rs17031140	G	T	594.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	7723588	rs3737906	C	T	8544.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr1	7723957	rs12128526	G	A	15196.77	.	AC=2;AF=1.00;AN=2;DB;DP=569;set=Intersection	GT:AD:AF:DP	1/1:0,556:1.00:556
chr1	7725284	rs4908671	C	A	1680.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr1	7792411	rs2301488	C	T	744.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:2,28:0.93:30
chr1	7796641	rs2071985	A	G	913.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	7797734	rs1417986	T	A	1944.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr1	7807897	rs12133253	A	G	6499.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr1	7807966	rs34083763	GT	G	945.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.921;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=1.230;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.13;ReadPosRankSum=1.461;SOR=1.038;set=HC	GT:AD:AF:DP	0/1:22,63:0.74:85
chr1	7809728	rs60799863	C	CT	805.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.673;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.92;ReadPosRankSum=0.992;SOR=1.516;set=HC	GT:AD:AF:DP	1/1:7,47:0.87:54
chr1	7811014	rs1573753	G	A	2178.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr1	7811215	rs10779689	A	G	5753.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr1	7812398	rs9919223	A	G	199.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	7838113	rs697675	A	C	2163.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr1	7845695	rs228729	T	C	1978.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr1	7847362	rs35115980	C	CT	378.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	7847614	rs697685	G	A	391.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	7861304	rs707465	T	C	734.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	7869915	rs228668	G	C	2353.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr1	7870048	rs228669	T	C	2011.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:2,77:0.97:79
chr1	7870144	rs228670	A	C	1510.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr1	7879627	rs10462018	C	T	638.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	7887248	rs2859387	G	A	6649.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:1,239:1.00:240
chr1	7887493	rs228696	T	C	16652.77	.	AC=2;AF=1.00;AN=2;DB;DP=633;set=Intersection	GT:AD:AF:DP	1/1:0,622:1.00:622
chr1	7889804	rs228701	C	G	2138.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr1	7889972	.	GAGAATCCATCCCATCCTACTGCCAGCGCTCTGTCCACAGGATCGCCTCCCATGA	G	9148.73	.	AC=2;AF=1.00;AN=2;DP=480;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.62;QD=43.77;SOR=0.803;set=HC	GT:AD:AF:DP	1/1:0,209:1.00:209
chr1	7890264	rs1773135	A	G	5437.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr1	7906476	rs172932	G	T	3376.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr1	7907007	rs697694	G	A	1178.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	7907984	rs4908485	A	G	1735.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr1	7913029	rs34305100	A	G	2961.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr1	7913445	rs13306061	C	T	5448.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr1	7998963	rs226476	T	G	3626.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr1	8029319	rs41278962	A	G	459.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	8029500	rs147617838	TG	T	100.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.796;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=5.614;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.60;ReadPosRankSum=1.380;SOR=0.086;set=HC	GT:AD:AF:DP	0/1:10,8:0.44:18
chr1	8384268	rs6702047	T	C	2411.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr1	8390495	rs1058619	A	G	6367.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:1,246:1.00:247
chr1	8395441	rs2305016	T	C	4382.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:2,166:0.99:168
chr1	8404093	rs1055236	C	T	2337.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr1	8526142	rs4908760	G	A	869.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	8557320	rs7518608	C	G	536.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	8557691	rs7530745	A	C	1173.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	8926285	rs3831913	A	AG	1263.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	8926752	rs2781065	T	C	582.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	8930369	rs2781060	T	C	1227.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	8930385	rs2765511	G	A	1428.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:1,52:0.98:53
chr1	8935149	rs2038904	A	G	1947.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr1	9011421	rs41278978	A	G	2924.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr1	9063602	rs4908804	G	C	2562.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr1	9063646	rs4908805	T	C	1281.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	9164698	rs202227960	C	T	1892.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr1	9165868	rs1705303	A	G	266.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	9306849	rs2310925	T	C	1744.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr1	9307033	rs7524046	G	A	9996.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	1/1:0,381:1.00:381
chr1	9307138	rs11121350	T	C	5000.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr1	9307230	rs12032814	T	A	1051.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	9323910	rs6688832	G	A	11937.77	.	AC=2;AF=1.00;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	1/1:1,438:1.00:439
chr1	9324571	rs9434742	T	C	11430.77	.	AC=2;AF=1.00;AN=2;DB;DP=439;set=Intersection	GT:AD:AF:DP	1/1:0,428:1.00:428
chr1	9599823	rs148840119	A	G	119.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.97;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	9627521	rs6698575	A	G	772.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	9633387	.	G	GT	161.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.779;ClippingRankSum=0.000;DP=66;ExcessHet=3.0103;FS=1.128;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.65;ReadPosRankSum=0.109;SOR=0.870;set=HC	GT:AD:AF:DP	0/1:43,18:0.30:61
chr1	9642329	rs56026893	C	T	3667.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:3,139:0.98:142
chr1	9655795	rs4073710	G	A	1351.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	9671257	rs70979767	CT	C	90.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.773;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.000;QD=0.79;ReadPosRankSum=0.836;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:84,31:0.27:115
chr1	9770690	.	CAG	C	58.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.005;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=1.763;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=2.205;QD=1.51;ReadPosRankSum=0.990;SOR=0.306;set=HC	GT:AD:AF:DP	0/1:32,7:0.18:39
chr1	9780987	rs181919452	T	C	1819.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr1	9792105	rs377673198	G	GA	548.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	9803844	rs141608189	G	A	828.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	9816620	rs6680090	T	C	6917.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.34;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,273:1.00:273
chr1	10027540	rs2890358	G	A	1394.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	10041298	.	AT	A	523.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.363;ClippingRankSum=0.000;DP=216;ExcessHet=3.0103;FS=0.628;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.421;QD=2.98;ReadPosRankSum=-0.908;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:119,57:0.32:176
chr1	10335315	rs6685773	G	A	1013.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	10342629	rs3748576	G	A	750.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	10384711	rs201407650	C	CT	73.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.721;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=1.691;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=1.416;QD=2.11;ReadPosRankSum=-2.089;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:25,10:0.29:35
chr1	10397080	rs71643087	A	G	4308.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr1	10425063	.	CA	C	76.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.636;ClippingRankSum=-0.000;DP=13;ExcessHet=3.0103;FS=6.421;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.90;ReadPosRankSum=1.446;SOR=0.056;set=HC	GT:AD:AF:DP	0/1:4,9:0.69:13
chr1	10468005	rs144558011	C	CA	882.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.362;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=2.303;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.41;ReadPosRankSum=0.640;SOR=1.154;set=HC	GT:AD:AF:DP	0/1:35,70:0.67:105
chr1	10479055	rs5772408	G	GT	145.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.649;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=4.502;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.663;QD=2.35;ReadPosRankSum=-1.121;SOR=1.409;set=HC	GT:AD:AF:DP	0/1:45,17:0.27:62
chr1	10490285	rs649639	T	C	100.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	10490699	.	GC	G	114	.	AC=1;AF=0.500;AN=2;BRF=0.31;FR=0.5000;HP=5;HapScore=2;MGOF=160;MMLQ=24;MQ=60.4;NF=4;NR=7;PP=114;QD=12.6363636364;SC=GTACCCGGCAGCCCCCGGCGG;SbPval=0.29;Source=Platypus;TC=20;TCF=5;TCR=15;TR=11;WE=10490707;WS=10490689;set=Platypus	GT:AD:AF:DP	0/1:9,11:0.55:20
chr1	10490759	rs143754643	TTGGCTTAAC	T	862.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	10502307	rs33919161	AT	A	544.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.39;QD=19.45;SOR=1.382;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	10511589	rs666103	T	C	2835.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr1	10523728	rs200149870	CT	C	575.86	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:7,37:0.84:44
chr1	10555257	rs622623	C	T	3598.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr1	10596388	rs2480779	A	G	1210.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	11026381	.	T	TA	127.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.585;ClippingRankSum=0.000;DP=187;ExcessHet=3.0103;FS=2.820;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.74;ReadPosRankSum=-0.313;SOR=0.999;set=HC	GT:AD:AF:DP	0/1:142,31:0.18:173
chr1	11042201	rs56848003	C	CAG	2057.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr1	11079077	rs2273348	A	G	893.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	11080723	rs143130606	T	TG	2275.73	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr1	11086097	rs3215616	A	AT	3336.73	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr1	11087524	rs1782455	G	A	6052.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr1	11087835	rs1782454	T	C	1584.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	11090916	rs12711521	C	A	2447.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr1	11094665	rs11121684	G	A	389.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.36;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	11095039	rs6695096	C	T	235.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	11104845	rs9430347	T	C	441.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	11105106	rs2273345	C	T	3277.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr1	11105122	rs2273344	C	T	3386.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr1	11119899	rs7545802	T	C	1476.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr1	11126569	rs2791659	C	A	830.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	11126941	rs6701726	C	T	1581.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:1,59:0.98:60
chr1	11128001	rs2791657	A	G	1328.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	11128329	rs2791656	A	G	537.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	11128654	rs2791655	G	A	3036.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.36;SOR=1.295;set=HC	GT:AD:AF:DP	1/1:0,111:1.00:111
chr1	11129848	rs2791653	A	G	1003.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	11132217	rs1130683	G	A	2019.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.23;SOR=0.719;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr1	11133956	.	A	AAAG	1239.73	.	AC=2;AF=1.00;AN=2;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=67.13;QD=31.79;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	11134157	rs2748876	T	G	3076.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:1,111:0.99:112
chr1	11134470	.	A	AT	115.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.339;ClippingRankSum=0.000;DP=74;ExcessHet=3.0103;FS=1.338;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.00;ReadPosRankSum=-0.847;SOR=0.404;set=HC	GT:AD:AF:DP	0/1:43,15:0.26:58
chr1	11137778	rs2259886	C	T	762.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	11140620	.	AACACAC	A	533.73	.	AC=2;AF=1.00;AN=2;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.72;QD=41.06;SOR=2.147;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	11141187	rs2258621	C	G	5629.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr1	11151779	rs1148482	A	G	640.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	11156045	.	C	CT	90.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.876;ClippingRankSum=0.000;DP=58;ExcessHet=3.0103;FS=3.119;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.75;ReadPosRankSum=0.516;SOR=2.179;set=HC	GT:AD:AF:DP	0/1:20,13:0.39:33
chr1	11187893	rs1770344	T	C	1577.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr1	11205058	rs1057079	C	T	8585.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:2,317:0.99:319
chr1	11288758	rs1064261	G	A	2881.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr1	11292666	rs10864495	T	A	890.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	11294474	rs718206	T	A	887.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	11298790	rs2024627	T	C	578.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.56;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	11298823	rs35144517	C	CT	133.52	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.877;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=2.963;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.54;ReadPosRankSum=1.330;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:3,11:0.79:14
chr1	11301714	rs1135172	A	G	8405.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr1	11317320	rs2092642	C	T	1475.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr1	11318763	rs2076657	C	G	1047.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	11319587	rs4845988	A	G	418.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	11561593	rs2817580	G	A	7772.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:1,288:1.00:289
chr1	11575375	rs2594318	T	A	3425.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr1	11579470	rs2072994	G	A	6719.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr1	11589490	rs182815266	G	T	2861.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:1,104:0.99:105
chr1	11593793	rs113116961	T	TGCACACACGCAC	4145.73	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:2,97:0.98:99
chr1	11709052	rs4397658	C	G	1972.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:1,78:0.99:79
chr1	11709764	rs2235658	G	T	1970.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr1	11714368	rs2272983	T	G	1996.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr1	11740329	rs151210857	AGGCGTGAGCCAC	A	6870.73	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr1	11779762	rs12117076	C	T	4312.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:2,164:0.99:166
chr1	11782814	rs7414943	G	A	3601.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.68;SOR=0.769;set=HC	GT:AD:AF:DP	1/1:0,135:1.00:135
chr1	11782884	rs368231456	TC	T	43.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.378;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.04;ReadPosRankSum=0.973;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:31,11:0.26:42
chr1	11782886	rs6540990	C	T	532.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.353;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.68;ReadPosRankSum=-0.989;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:11,31:0.74:42
chr1	11796168	rs146190997	CGGGCG	C	592.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	11824575	rs10864536	T	C	2501.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr1	11826085	rs114941496	G	A	7617.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:1,276:1.00:277
chr1	11827180	rs6540995	A	G	3432.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.61;SOR=2.423;set=HC	GT:AD:AF:DP	1/1:0,120:1.00:120
chr1	11827304	rs6540996	A	G	7339.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr1	11828364	rs77347935	G	A	2466.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:2,94:0.98:96
chr1	11831543	rs72638684	C	T	2905.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr1	11831615	rs6667720	C	T	4036.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr1	11831756	rs6680385	A	G	1223.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	11835455	rs72638698	T	G	4704.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:2,174:0.99:176
chr1	11835556	rs41275456	C	T	3896.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:2,145:0.99:147
chr1	11836441	rs6699669	T	C	2928.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr1	11836628	rs6699881	T	C	2175.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr1	11836670	rs41275458	C	A	1296.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr1	11838696	rs72640210	A	G	3993.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr1	11838841	rs56001051	A	G	3578.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.013;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.71;ReadPosRankSum=-0.941;SOR=0.925;set=HC	GT:AD:AF:DP	1/1:2,132:0.99:134
chr1	11839009	rs55685198	C	T	2495.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr1	11839034	rs55967531	G	A	2547.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr1	11839201	rs41307759	T	A	462.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	11839792	rs12566905	T	C	411.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	11839923	rs12561919	C	T	1099.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	11839998	rs4846044	T	C	1028.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:1,41:0.98:42
chr1	11844737	rs55890341	A	G	296.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	11845113	rs11587953	G	A	1741.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr1	11845167	rs199890035	TTTA	T	5035.73	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr1	11845222	rs55867221	T	C	4196.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr1	11847449	rs3737967	G	A	3279.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr1	11847861	rs1537516	G	A	975.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	11847902	rs1537515	C	A	1152.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	11848068	rs1537514	G	C	4223.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr1	11848879	rs2077360	A	G	3588.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr1	11848972	rs72640221	G	A	511.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	11849447	rs868014	A	G	2904.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:2,111:0.98:113
chr1	11850927	rs2274976	C	T	3541.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr1	11851003	rs3818762	G	C	1465.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	11852300	rs1476413	C	T	5048.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr1	11854457	rs4846051	G	A	11857.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr1	11854476	rs1801131	T	G	12457.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr1	11854671	rs12121543	C	A	5378.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr1	11854896	rs2066462	G	A	2352.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr1	11863057	rs2066470	G	A	8454.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:2,322:0.99:324
chr1	11866451	rs3737965	G	A	566.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	11867044	rs3737964	T	C	920.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	11879685	rs198393	C	T	2950.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr1	11879699	rs2050265	A	G	2465.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr1	11883731	rs12567136	C	T	2638.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr1	11884555	rs198400	A	G	3963.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr1	11886383	rs138460149	C	CTG	5101.73	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr1	11887303	rs7537765	A	G	1051.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	11887316	rs41275478	C	A	952.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	11888061	rs77072136	C	T	3020.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr1	11888384	rs198401	A	G	3634.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr1	11889225	rs41275484	G	A	1485.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:1,56:0.98:57
chr1	11889468	rs535107	A	G	1170.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr1	11897082	rs41275500	C	T	4108.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr1	11897286	rs72640267	G	T	2531.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:1,86:0.99:87
chr1	11897592	rs198406	A	G	4348.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr1	11898789	rs2272803	G	T	17401.77	.	AC=2;AF=1.00;AN=2;DB;DP=658;set=Intersection	GT:AD:AF:DP	1/1:5,648:0.99:653
chr1	11899033	rs1023252	G	T	8119.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr1	11900035	rs198410	G	A	1884.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr1	11907648	rs5063	C	T	6946.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr1	11917618	rs3831247	A	AT	2941.73	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr1	11971345	rs4845889	T	C	332.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.60;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	11982544	rs2639453	T	C	2848.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr1	11982580	rs11555351	G	A	4419.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr1	11982955	rs35073764	G	A	1388.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.05;QD=29.55;SOR=0.823;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr1	11983206	rs3795408	A	G	3321.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr1	12004493	rs200129470	C	CAA	837.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.082;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.13;MQRankSum=1.131;QD=22.64;ReadPosRankSum=-0.351;SOR=0.474;set=HC	GT:AD:AF:DP	0/1:8,29:0.78:37
chr1	12009956	rs7551175	G	A	2609.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr1	12012645	rs183509111	G	C	4547.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr1	12016957	rs41307745	T	G	2993.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:3,113:0.97:116
chr1	12027204	rs2273293	C	T	1090.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	12033113	rs3737961	A	G	4347.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.63;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,102:1.00:102
chr1	12033120	rs3820190	G	C	4127.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.36;SOR=2.435;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr1	12056440	rs2236056	C	T	735.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	12062205	rs2236057	A	G	3360.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr1	12066868	.	T	G	651.77	.	AC=2;AF=1.00;AN=2;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	12071433	rs3766741	C	G	2024.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr1	12071680	rs1042842	A	G	736.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	12164437	rs2230622	C	T	3957.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr1	12175729	rs1763642	C	T	7001.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr1	12175818	rs598661	A	G	4502.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:4,175:0.98:179
chr1	12183174	rs4846096	A	C	583.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	12198635	rs6419481	T	C	679.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	12252333	rs150721544	C	CTG	506.73	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:11,21:0.66:32
chr1	12401868	rs28551666	A	C	5879.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr1	12567232	rs7554257	A	G	3997.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr1	12638964	rs2275875	T	C	3935.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr1	12639018	rs2275874	C	T	1833.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr1	12639168	rs3128461	A	G	3589.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr1	12725943	rs1419298	T	C	5056.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:1,189:0.99:190
chr1	12776218	rs3000860	A	C	463.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	12776344	rs3000859	A	T	3155.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr1	12779560	rs3010876	T	C	7621.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr1	12779618	rs3010877	T	C	5768.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr1	12785093	rs4361998	T	G	1271.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	12785494	rs7513079	G	T	6780.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:4,281:0.99:285
chr1	12786070	rs3000930	A	G	444.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	12820870	rs1132185	T	C	6872.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr1	12835868	rs1812242	T	C	4019.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr1	12837634	rs848578	T	A	3462.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr1	12837840	rs848577	G	C	656.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	12854414	rs1063769	G	A	1048.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:164,68:0.29:232
chr1	12854474	rs1063774	A	C	2185.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.102;ClippingRankSum=0.000;DB;DP=386;ExcessHet=3.0103;FS=7.988;MLEAC=1;MLEAF=0.500;MQ=58.05;MQRankSum=-14.108;QD=5.68;ReadPosRankSum=4.477;SOR=0.864;set=HC	GT:AD:AF:DP	0/1:310,75:0.19:385
chr1	12854479	rs1063775	C	G	2137.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.073;ClippingRankSum=0.000;DB;DP=401;ExcessHet=3.0103;FS=7.876;MLEAC=1;MLEAF=0.500;MQ=58.11;MQRankSum=-14.473;QD=5.34;ReadPosRankSum=3.350;SOR=0.915;set=HC	GT:AD:AF:DP	0/1:324,76:0.19:400
chr1	12888601	rs113914674	G	GC	2124.73	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr1	12907282	rs139731855	G	C	3013.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.674;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=3.599;MLEAC=1;MLEAF=0.500;MQ=55.75;MQRankSum=-8.633;QD=17.03;ReadPosRankSum=3.167;SOR=0.472;set=HC	GT:AD:AF:DP	0/1:97,80:0.45:177
chr1	12907284	rs149796618	TG	CC	3013.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.547;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=3.577;JOINED;MLEAC=1;MLEAF=0.500;MQ=55.83;MQRankSum=-8.763;QD=16.74;ReadPosRankSum=3.391;SOR=0.471;set=HC	GT:AD:AF:DP	0/1:100,80:0.44:180
chr1	12907316	rs112607517	T	C	1672.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:167,89:0.35:256
chr1	12907350	rs2359486	CA	TG	2756.77	.	AC=1;AF=0.500;AN=2;DB;DP=320;JOINED;set=Intersection	GT:AD:AF:DP	0/1:236,83:0.26:319
chr1	12907370	rs2076063	A	T	1676.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.284;ClippingRankSum=0.000;DB;DP=369;ExcessHet=3.0103;FS=20.130;MLEAC=1;MLEAF=0.500;MQ=57.05;MQRankSum=-13.805;QD=4.62;ReadPosRankSum=-0.569;SOR=0.981;set=HC	GT:AD:AF:DP	0/1:296,67:0.18:363
chr1	12907379	rs74055698	TC	CA	1461.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.534;ClippingRankSum=0.000;DB;DP=379;ExcessHet=3.0103;FS=35.718;JOINED;MLEAC=1;MLEAF=0.500;MQ=56.20;MQRankSum=-13.355;QD=3.91;ReadPosRankSum=-0.621;SOR=1.755;set=HC	GT:AD:AF:DP	0/1:317,57:0.15:374
chr1	12907385	rs150590256	G	A	1180.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.027;ClippingRankSum=0.000;DB;DP=392;ExcessHet=3.0103;FS=43.078;MLEAC=1;MLEAF=0.500;MQ=55.71;MQRankSum=-13.093;QD=3.06;ReadPosRankSum=-0.983;SOR=2.226;set=HC	GT:AD:AF:DP	0/1:333,53:0.14:386
chr1	12907400	rs149302457	G	A	630.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.207;ClippingRankSum=0.000;DB;DP=410;ExcessHet=3.0103;FS=27.718;MLEAC=1;MLEAF=0.500;MQ=54.87;MQRankSum=-11.991;QD=1.57;ReadPosRankSum=-2.256;SOR=3.102;set=HC	GT:AD:AF:DP	0/1:359,43:0.11:402
chr1	12907408	rs146075045	T	A	428.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.739;ClippingRankSum=0.000;DB;DP=426;ExcessHet=3.0103;FS=25.085;MLEAC=1;MLEAF=0.500;MQ=54.39;MQRankSum=-10.803;QD=1.03;ReadPosRankSum=-1.323;SOR=3.378;set=HC	GT:AD:AF:DP	0/1:379,36:0.09:415
chr1	12907777	rs28391533	T	C	2899.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.946;ClippingRankSum=0.000;DB;DP=337;ExcessHet=3.0103;FS=73.769;MLEAC=1;MLEAF=0.500;MQ=57.06;MQRankSum=-15.683;QD=8.71;ReadPosRankSum=-2.566;SOR=3.309;set=HC	GT:AD:AF:DP	0/1:252,81:0.24:333
chr1	12907781	rs28441396	T	C	3396.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.664;ClippingRankSum=0.000;DB;DP=348;ExcessHet=3.0103;FS=54.601;MLEAC=1;MLEAF=0.500;MQ=57.00;MQRankSum=-15.093;QD=9.85;ReadPosRankSum=-3.025;SOR=2.577;set=HC	GT:AD:AF:DP	0/1:251,94:0.27:345
chr1	12907798	rs150096254	A	C	5019.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.983;ClippingRankSum=0.000;DB;DP=388;ExcessHet=3.0103;FS=47.611;MLEAC=1;MLEAF=0.500;MQ=56.93;MQRankSum=-13.135;QD=13.00;ReadPosRankSum=-2.076;SOR=2.101;set=HC	GT:AD:AF:DP	0/1:254,132:0.34:386
chr1	12907802	rs138087690	CC	TT	5251.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.367;ClippingRankSum=0.000;DB;DP=391;ExcessHet=3.0103;FS=52.713;JOINED;MLEAC=1;MLEAF=0.500;MQ=56.93;MQRankSum=-12.918;QD=13.50;ReadPosRankSum=-2.187;SOR=2.173;set=HC	GT:AD:AF:DP	0/1:247,142:0.37:389
chr1	12907829	rs74866336	T	C	5555.77	.	AC=1;AF=0.500;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	0/1:222,249:0.53:471
chr1	12907837	rs1736811	C	T	5230.77	.	AC=1;AF=0.500;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	0/1:241,240:0.50:481
chr1	12907885	rs848418	T	C	4180.77	.	AC=1;AF=0.500;AN=2;DB;DP=601;set=Intersection	GT:AD:AF:DP	0/1:379,222:0.37:601
chr1	12908236	rs1736809	G	T	2451.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.654;ClippingRankSum=0.000;DB;DP=221;ExcessHet=3.0103;FS=13.830;MLEAC=1;MLEAF=0.500;MQ=46.97;MQRankSum=-6.485;QD=11.35;ReadPosRankSum=-0.753;SOR=1.550;set=HC	GT:AD:AF:DP	0/1:141,75:0.35:216
chr1	12908243	rs1736808	A	G	2258.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.531;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=27.702;MLEAC=1;MLEAF=0.500;MQ=47.06;MQRankSum=-6.393;QD=12.01;ReadPosRankSum=1.843;SOR=2.634;set=HC	GT:AD:AF:DP	0/1:127,61:0.32:188
chr1	12919081	rs45443899	C	T	3021.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr1	12919983	rs77138000	G	A	9250.77	.	AC=2;AF=1.00;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	1/1:10,355:0.97:365
chr1	12921127	rs12139549	A	G	5812.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:2,224:0.99:226
chr1	13182899	rs28537666	A	G	886.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	13183422	rs28564063	T	C	3608.77	.	AC=1;AF=0.500;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	0/1:239,173:0.42:412
chr1	13183439	rs28713604	T	C	15680.77	.	AC=2;AF=1.00;AN=2;DB;DP=472;set=Intersection	GT:AD:AF:DP	1/1:0,469:1.00:469
chr1	13183511	rs72864546	T	C	7342.77	.	AC=1;AF=0.500;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	0/1:228,204:0.47:432
chr1	13183528	rs76937665	A	C	6756.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.731;ClippingRankSum=0.000;DB;DP=406;ExcessHet=3.0103;FS=14.911;MLEAC=1;MLEAF=0.500;MQ=55.72;MQRankSum=-10.755;QD=16.68;ReadPosRankSum=0.467;SOR=1.195;set=HC	GT:AD:AF:DP	0/1:230,175:0.43:405
chr1	13183532	rs77505369	CC	TT	6438.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.025;ClippingRankSum=0.000;DB;DP=405;ExcessHet=3.0103;FS=15.204;JOINED;MLEAC=1;MLEAF=0.500;MQ=55.66;MQRankSum=-10.936;QD=15.94;ReadPosRankSum=0.058;SOR=1.245;set=HC	GT:AD:AF:DP	0/1:234,170:0.42:404
chr1	13183567	rs78160026	C	T	2713.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.386;ClippingRankSum=0.000;DB;DP=332;ExcessHet=3.0103;FS=86.759;MLEAC=1;MLEAF=0.500;MQ=55.83;MQRankSum=-14.331;QD=8.22;ReadPosRankSum=-2.038;SOR=3.126;set=HC	GT:AD:AF:DP	0/1:241,89:0.27:330
chr1	13183573	rs76669210	G	T	2485.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.480;ClippingRankSum=0.000;DB;DP=309;ExcessHet=3.0103;FS=111.261;MLEAC=1;MLEAF=0.500;MQ=55.79;MQRankSum=-15.599;QD=8.10;ReadPosRankSum=-2.198;SOR=3.998;set=HC	GT:AD:AF:DP	0/1:234,73:0.24:307
chr1	13183966	rs80025711	G	T	271.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.920;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=17.904;MLEAC=1;MLEAF=0.500;MQ=45.58;MQRankSum=2.994;QD=3.72;ReadPosRankSum=1.917;SOR=0.060;set=HC	GT:AD:AF:DP	0/1:52,21:0.29:73
chr1	13183973	rs3929664	G	A	1173.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.046;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=23.304;MLEAC=1;MLEAF=0.500;MQ=45.49;MQRankSum=-3.597;QD=17.78;ReadPosRankSum=2.924;SOR=3.348;set=HC	GT:AD:AF:DP	0/1:21,45:0.68:66
chr1	13695974	rs142734546	T	C	155.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.79;QD=22.26;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	13802325	rs3013105	T	C	1368.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	13802437	rs3013106	G	A	3038.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:1,116:0.99:117
chr1	13910417	rs355025	C	T	8674.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:0,318:1.00:318
chr1	13933855	rs35870640	A	G	3027.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr1	13936822	rs404658	G	T	1277.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	13937089	rs2487643	G	T	1069.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	13940864	rs2486188	C	G	5011.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr1	14057425	rs35643856	G	GA	159.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.626;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.16;ReadPosRankSum=-0.969;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:108,30:0.22:138
chr1	14096635	rs2884788	A	T	592.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	14099763	rs10803426	C	T	2989.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr1	14105139	rs2076324	T	A	5724.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:12,224:0.95:236
chr1	14105298	rs1203678	G	A	9855.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:2,358:0.99:360
chr1	14106394	rs2308040	A	ACTC	12147.73	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr1	14109114	rs1203651	A	G	7914.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:2,291:0.99:293
chr1	14143003	rs1046331	A	G	5938.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr1	14149505	rs2697970	C	A	631.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	14149601	rs2697969	C	T	3076.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr1	14149622	rs2697968	T	C	3353.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr1	14220186	rs1358577	A	G	4426.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr1	15428358	rs477953	T	C	760.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	15439083	rs140963536	A	AAGGTCTTTTTTTTCTTCTCCCAGCGGC	4466.73	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr1	15497727	rs6429722	T	C	4152.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr1	15497832	rs41307794	T	C	2415.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr1	15497844	rs10429935	T	A	1844.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:1,68:0.99:69
chr1	15541537	rs3753314	C	T	2332.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr1	15546077	rs3753313	G	A	10609.77	.	AC=2;AF=1.00;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	1/1:0,403:1.00:403
chr1	15573775	rs1780598	A	G	271.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	15573787	.	C	A	236.18	.	AC=1;AF=0.500;AN=2;DP=13;set=Intersection	GT:AD:AF:DP	0/1:2,11:0.85:13
chr1	15578513	rs41269433	A	G	1524.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	15616183	rs487338	T	C	4034.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr1	15654737	.	CT	C	260.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.244;ClippingRankSum=0.000;DP=106;ExcessHet=3.0103;FS=5.984;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.87;ReadPosRankSum=-0.964;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:60,31:0.34:91
chr1	15769876	rs35149641	G	GC	3011.73	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr1	15783096	rs5772641	GA	G	5364.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.363;ClippingRankSum=0.000;DB;DP=283;ExcessHet=3.0103;FS=8.722;MLEAC=2;MLEAF=1.000;MQ=59.94;MQRankSum=-0.216;QD=19.80;ReadPosRankSum=1.514;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:7,264:0.97:271
chr1	15783117	rs5772642	C	CA	12149.73	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,327:1.00:327
chr1	15788269	rs3737696	A	C	4400.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;MQ=59.92;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr1	15802468	rs141820246	GA	G	7405.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.700;ClippingRankSum=0.000;DB;DP=412;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.33;MQRankSum=4.847;QD=19.19;ReadPosRankSum=1.584;SOR=0.851;set=HC	GT:AD:AF:DP	1/1:14,372:0.96:386
chr1	15812432	rs6429745	A	G	3380.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr1	15812665	rs2861484	G	T	1063.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	15813751	rs2011159	C	T	6406.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr1	15813969	rs3737704	A	C	3781.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr1	15820307	rs2234723	A	AC	1957.73	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	15820576	rs2020900	T	A	1093.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	15820607	rs2020895	A	G	578.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	15820618	rs2020898	A	G	504.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	15822043	rs4646091	T	C	890.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:2,38:0.95:40
chr1	15832383	rs1800614	G	T	1639.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	15832543	rs1052576	T	C	8305.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr1	15834297	rs2020903	G	A	1405.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	15834491	rs4646032	G	A	3644.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr1	15844615	rs1132312	A	G	2142.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:3,82:0.96:85
chr1	15844926	rs1820205	C	T	1760.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr1	15845022	rs112189619	C	CTGAG	613.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	15850483	rs4645985	G	A	257.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	15850553	rs4645984	C	CGGGGGCG	1166.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	15850603	rs4645983	G	A	3000.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.92;QD=44.13;SOR=0.949;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr1	15850613	rs1052571	G	A	3198.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.81;QD=41.01;SOR=0.798;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr1	15850792	rs142513755	GC	G	1101.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	15860803	rs11583306	C	T	9720.77	.	AC=2;AF=1.00;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	1/1:0,370:1.00:370
chr1	15873410	rs35196202	CT	C	379.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.994;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=4.117;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=1.592;QD=3.01;ReadPosRankSum=-1.386;SOR=0.358;set=HC	GT:AD:AF:DP	0/1:72,54:0.43:126
chr1	15890355	.	A	AAAAG	1500.73	.	AC=2;AF=1.00;AN=2;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=63.42;QD=40.56;SOR=2.242;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	15892415	rs2236215	A	C	5255.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:2,199:0.99:201
chr1	15901121	rs61213091	C	T	865.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	15904318	rs11544523	C	T	3660.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:1,141:0.99:142
chr1	15906696	.	C	CT	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.583;ClippingRankSum=0.000;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.451;QD=1.23;ReadPosRankSum=-0.918;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:19,10:0.34:29
chr1	15909547	rs6429756	G	A	480.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	15909624	rs111921608	TGAGTACAG	T	2220.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	15909744	rs11580170	C	T	1831.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.30;QD=26.55;SOR=0.722;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr1	15909850	rs6429757	C	G	1425.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr1	15909895	rs6429758	A	G	726.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	15911031	rs10927808	T	G	1935.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr1	15911131	rs59475085	G	A	9442.77	.	AC=2;AF=1.00;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	1/1:0,362:1.00:362
chr1	15911493	rs6687474	A	G	139.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.98;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	15956769	rs72647120	G	T	5540.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:1,208:1.00:209
chr1	15959886	rs3795762	C	G	688.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	15959977	rs3795763	C	T	2306.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr1	15960364	rs41270277	G	A	12406.77	.	AC=2;AF=1.00;AN=2;DB;DP=475;set=Intersection	GT:AD:AF:DP	1/1:0,470:1.00:470
chr1	15965025	.	CTT	C	161.75	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.373;ClippingRankSum=-0.000;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.78;ReadPosRankSum=-0.748;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:6,9:0.60:15
chr1	15986547	rs3766163	T	C	7762.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:1,275:1.00:276
chr1	16011005	.	G	GGGC	1663.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.576;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.23;MQRankSum=0.058;QD=39.61;ReadPosRankSum=1.685;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:2,40:0.95:42
chr1	16011192	.	G	GGCGACCCTGCTGCCGCAGGGACTC	1900.73	.	AC=2;AF=1.00;AN=2;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.34;QD=43.20;SOR=2.636;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	16042724	rs66610224	TC	T	1766.73	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:38,114:0.75:152
chr1	16042766	rs12091750	T	C	4258.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr1	16043157	rs2280115	G	A	3156.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr1	16044401	rs16851970	G	A	3146.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr1	16044929	rs35757484	A	G	2299.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr1	16044945	rs12091644	G	A	2596.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr1	16047726	rs12734937	T	C	998.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	16048005	rs12091326	A	G	920.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	16048038	rs12092485	T	C	527.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	16053493	rs41393951	G	A	882.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	16055039	rs12724755	C	T	381.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	16055732	rs6429772	C	T	3611.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:1,139:0.99:140
chr1	16056364	rs3817269	G	A	2908.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr1	16058698	rs77293491	CA	C	3280.73	.	AC=2;AF=1.00;AN=2;DB;DP=93;MQ=60.92;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr1	16064411	rs937592	T	C	7278.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr1	16065276	rs71002925	AAC	A	880.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=31.45;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	16069644	rs11584945	C	T	3082.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:2,116:0.98:118
chr1	16095031	rs140170023	G	A	2443.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr1	16097237	rs10803398	G	A	812.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	16245610	rs35883633	GT	G	219.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	16248728	.	C	CT	145.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.045;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.10;ReadPosRankSum=2.083;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:33,14:0.30:47
chr1	16256007	rs848209	T	C	6469.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr1	16259813	rs848210	A	G	4796.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr1	16265422	rs848214	A	G	5398.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr1	16271156	rs12134932	C	A	4284.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr1	16272250	rs848217	A	G	3290.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr1	16355471	rs80256433	C	G	3595.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr1	16362621	rs2009044	G	A	10650.77	.	AC=2;AF=1.00;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	1/1:1,406:1.00:407
chr1	16371932	rs6604909	A	C	1301.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	16372282	rs67016480	GT	G	574.73	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:4,24:0.86:28
chr1	16374533	rs2014562	G	C	4412.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr1	16374590	rs2282263	C	T	2741.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:3,121:0.98:124
chr1	16374972	rs6696349	T	G	2026.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr1	16375063	rs1889789	CA	GC	3264.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr1	16375132	rs12118326	C	T	1290.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	16376191	rs7367494	C	T	1768.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr1	16376230	rs59006537	A	AT	5387.73	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:1,119:0.99:120
chr1	16376232	rs59924562	A	T	5396.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.891;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.88;MQRankSum=-0.376;QD=43.88;ReadPosRankSum=-0.352;SOR=0.783;set=HC	GT:AD:AF:DP	1/1:1,122:0.99:123
chr1	16376238	rs34589727	TC	T	3806.73	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:1,122:0.99:123
chr1	16376278	rs7365182	G	A	5628.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:2,211:0.99:213
chr1	16376319	rs7368151	T	C	7674.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:2,297:0.99:299
chr1	16376458	rs7368166	T	C	2712.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:3,103:0.97:106
chr1	16376953	rs10927895	C	T	3862.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr1	16377598	rs149762502	T	TG	4533.73	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:3,150:0.98:153
chr1	16377870	rs6650116	C	T	3340.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:2,111:0.98:113
chr1	16377935	rs6650117	A	G	7480.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:2,289:0.99:291
chr1	16377999	rs6650118	CA	TG	19375.77	.	AC=2;AF=1.00;AN=2;DB;DP=437;JOINED;set=Intersection	GT:AD:AF:DP	1/1:1,436:1.00:437
chr1	16378093	rs41269167	A	G	11177.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.279;ClippingRankSum=0.000;DB;DP=263;ExcessHet=3.0103;FS=2.488;MLEAC=2;MLEAF=1.000;MQ=59.63;MQRankSum=-0.464;QD=42.83;ReadPosRankSum=0.112;SOR=1.045;set=HC	GT:AD:AF:DP	1/1:3,258:0.99:261
chr1	16378099	rs182734810	GC	CA	11043.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.069;ClippingRankSum=0.000;DB;DP=247;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=59.63;MQRankSum=-0.362;QD=44.89;ReadPosRankSum=-0.796;SOR=1.260;set=HC	GT:AD:AF:DP	1/1:2,244:0.99:246
chr1	16378215	rs5252	C	T	3212.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr1	16378331	rs41269169	G	C	2397.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.72;QD=42.82;SOR=1.101;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr1	16378339	rs41269171	C	G	2266.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.60;QD=44.45;SOR=1.201;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	16378725	rs12140311	A	T	2215.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr1	16378931	rs56334930	A	G	5187.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr1	16378936	rs112905730	AG	A	5080.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr1	16378938	.	G	A	4979.77	.	AC=2;AF=1.00;ALERT;AN=2;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.34;QD=46.11;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,108:1.00:108
chr1	16378945	rs56331467	C	T	4561.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.92;QD=45.17;SOR=1.368;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chr1	16378951	rs56152056	T	C	4336.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.29;QD=44.71;SOR=1.337;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr1	16378954	rs56112410	G	A	4246.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.93;QD=47.19;SOR=1.508;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr1	16378980	rs56327038	G	C	1608.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr1	16378991	rs56361591	G	A	1861.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.47;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	16378998	rs55874146	T	C	1625.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.94;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	16380196	rs5253	T	C	8522.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	1/1:2,332:0.99:334
chr1	16380243	rs2275166	A	G	6048.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.11;QD=42.01;SOR=1.965;set=HC	GT:AD:AF:DP	1/1:0,144:1.00:144
chr1	16380252	rs2275167	C	T	5517.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.18;QD=45.23;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,122:1.00:122
chr1	16383448	rs10803415	A	C	4151.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr1	16383668	rs6660218	T	G	3357.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr1	16383742	rs1057857	C	G	4754.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr1	16385131	rs1832151	C	A	552.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	16386247	rs2095543	T	C	209.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;MQ=47.95;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	16386447	rs11576236	G	C	1152.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr1	16388646	rs2863456	T	C	816.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	16388709	rs28570004	G	T	433.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:1,17:0.94:18
chr1	16388756	rs113174531	CACCCAT	C	232.80	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	16388766	rs3978469	C	T	241.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	16528218	rs6676143	G	T	1871.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:1,68:0.99:69
chr1	16528469	rs58225172	GCCTACCCTAGGGAC	GTACCCTAGGGAC,G	1720.73	.	AC=2,0;AF=1.00,0.00;ALERT;AN=2;DB;DP=42;set=Intersection	GT:AF:DP	1/1:1.00:39
chr1	16528472	rs200243292	TACCCTAGGGACC	T	1717.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.04;SOR=2.362;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	16528484	.	C	T	663	.	AC=2;AF=1.00;AN=2;BRF=0.41;FR=1.0000;HP=2;HapScore=1;MGOF=8;MMLQ=28;MQ=60.0;NF=6;NR=19;PP=663;QD=27.9108485019;SC=CCCTAGGGACCCATGTCTGCC;SbPval=0.45;Source=Platypus;TC=28;TCF=6;TCR=22;TR=25;WE=16528492;WS=16528459;set=Platypus	GT:AD:AF:DP	1/1:3,25:0.89:28
chr1	16528843	rs1693540	A	G	1191.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	16533022	rs221052	C	T	11685.77	.	AC=2;AF=1.00;AN=2;DB;DP=462;set=Intersection	GT:AD:AF:DP	1/1:0,450:1.00:450
chr1	16543175	rs221024	A	C	2507.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr1	16555882	rs12748676	C	T	804.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	16559541	rs3738631	C	G	2937.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr1	16562968	rs6603850	C	A	1019.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	16577908	rs12069239	G	C	6695.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr1	16583030	rs3830890	C	CA	707.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	16621183	rs1007150	C	T	1508.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr1	16621234	rs12353958	G	A	1944.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:2,72:0.97:74
chr1	16693725	rs142845497	T	TG	277.74	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.77;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	16725330	rs41307763	G	A	5602.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:2,217:0.99:219
chr1	16731646	rs3106498	T	C	1393.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr1	16736132	rs4661746	T	C	1462.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr1	16736546	rs10907226	C	T	1525.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr1	16776743	rs35074812	G	GT	926.73	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	16778265	rs279782	G	T	2098.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr1	16785154	.	T	TA	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.520;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=2.817;MLEAC=1;MLEAF=0.500;MQ=60.45;MQRankSum=1.561;QD=1.76;ReadPosRankSum=-1.717;SOR=1.954;set=HC	GT:AD:AF:DP	0/1:15,7:0.32:22
chr1	16785564	rs11543230	C	T	800.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:1,31:0.97:32
chr1	16802890	rs696095	G	A	135.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	16803267	rs156846	T	C	563.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	16862273	rs76517011	C	A	574.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.272;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=5.844;MLEAC=1;MLEAF=0.500;MQ=50.32;MQRankSum=-0.391;QD=3.18;ReadPosRankSum=0.200;SOR=1.652;set=HC	GT:AD:AF:DP	0/1:145,36:0.20:181
chr1	16862294	.	A	G	929.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.376;ClippingRankSum=0.000;DP=304;ExcessHet=3.0103;FS=0.692;MLEAC=1;MLEAF=0.500;MQ=49.12;MQRankSum=-1.147;QD=3.07;ReadPosRankSum=-0.541;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:242,61:0.20:303
chr1	16862296	rs1759227	G	C	4165.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:145,172:0.54:317
chr1	16862340	rs200564364	G	A	4764.77	.	AC=1;AF=0.500;AN=2;DB;DP=686;set=Intersection	GT:AD:AF:DP	0/1:438,242:0.36:680
chr1	16862454	rs71248115	T	G	18511.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.481;ClippingRankSum=0.000;DB;DP=1730;ExcessHet=3.0103;FS=1.742;MLEAC=1;MLEAF=0.500;MQ=48.04;MQRankSum=-14.645;QD=10.71;ReadPosRankSum=-2.548;SOR=0.837;set=HC	GT:AD:AF:DP	0/1:845,883:0.51:1728
chr1	16862461	rs145386412	T	A	42762.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.963;ClippingRankSum=0.000;DB;DP=1719;ExcessHet=3.0103;FS=1.222;MLEAC=1;MLEAF=0.500;MQ=48.00;MQRankSum=-20.994;QD=24.88;ReadPosRankSum=-1.020;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:512,1207:0.70:1719
chr1	16862472	rs200621127	G	C	3493.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.960;ClippingRankSum=0.000;DB;DP=1706;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=48.00;MQRankSum=-7.214;QD=2.05;ReadPosRankSum=2.075;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:1394,312:0.18:1706
chr1	16862502	rs141629643	A	G	29666.77	.	AC=1;AF=0.500;AN=2;DB;DP=1696;set=Intersection	GT:AD:AF:DP	0/1:436,1252:0.74:1688
chr1	16862566	rs77197089	G	A	2309.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.569;ClippingRankSum=0.000;DB;DP=1372;ExcessHet=3.0103;FS=0.718;MLEAC=1;MLEAF=0.500;MQ=51.38;MQRankSum=-4.304;QD=1.68;ReadPosRankSum=-0.935;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:1138,233:0.17:1371
chr1	16862638	rs369070338	A	G	1716.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.565;ClippingRankSum=0.000;DB;DP=624;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.26;MQRankSum=-2.408;QD=2.76;ReadPosRankSum=0.716;SOR=0.731;set=HC	GT:AD:AF:DP	0/1:497,126:0.20:623
chr1	16862708	rs1762987	T	G	3430.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.555;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=13.695;MLEAC=1;MLEAF=0.500;MQ=48.74;MQRankSum=-8.410;QD=25.60;ReadPosRankSum=-3.090;SOR=2.599;set=HC	GT:AD:AF:DP	0/1:45,89:0.66:134
chr1	16862712	rs61769538	G	T	3315.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.375;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=7.856;MLEAC=1;MLEAF=0.500;MQ=48.98;MQRankSum=-8.234;QD=27.40;ReadPosRankSum=-3.155;SOR=2.156;set=HC	GT:AD:AF:DP	0/1:43,78:0.64:121
chr1	16862714	rs61769539	T	G	3117.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.457;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=7.813;MLEAC=1;MLEAF=0.500;MQ=49.03;MQRankSum=-8.260;QD=26.88;ReadPosRankSum=-3.180;SOR=2.106;set=HC	GT:AD:AF:DP	0/1:42,74:0.64:116
chr1	16862732	.	A	G	650.77	.	AC=1;AF=0.500;AN=2;DP=59;set=Intersection	GT:AD:AF:DP	0/1:34,25:0.42:59
chr1	16863144	.	C	T	213.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.668;ClippingRankSum=0.000;DP=61;ExcessHet=3.0103;FS=2.389;MLEAC=1;MLEAF=0.500;MQ=53.77;MQRankSum=-5.198;QD=3.50;ReadPosRankSum=2.505;SOR=1.336;set=HC	GT:AD:AF:DP	0/1:51,10:0.16:61
chr1	16863146	.	A	C	207.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.325;ClippingRankSum=0.000;DP=69;ExcessHet=3.0103;FS=2.348;MLEAC=1;MLEAF=0.500;MQ=54.29;MQRankSum=-5.456;QD=3.01;ReadPosRankSum=2.905;SOR=1.324;set=HC	GT:AD:AF:DP	0/1:59,10:0.14:69
chr1	16863152	.	C	T	198.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.791;ClippingRankSum=0.000;DP=73;ExcessHet=3.0103;FS=2.303;MLEAC=1;MLEAF=0.500;MQ=54.87;MQRankSum=-5.740;QD=2.72;ReadPosRankSum=3.173;SOR=1.417;set=HC	GT:AD:AF:DP	0/1:63,10:0.14:73
chr1	16863159	.	C	G	183.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.894;ClippingRankSum=0.000;DP=76;ExcessHet=3.0103;FS=4.667;MLEAC=1;MLEAF=0.500;MQ=55.32;MQRankSum=-5.996;QD=2.42;ReadPosRankSum=3.325;SOR=1.706;set=HC	GT:AD:AF:DP	0/1:66,10:0.13:76
chr1	16863165	.	G	C	177.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.012;ClippingRankSum=0.000;DP=80;ExcessHet=3.0103;FS=4.659;MLEAC=1;MLEAF=0.500;MQ=55.56;MQRankSum=-6.147;QD=2.22;ReadPosRankSum=3.462;SOR=1.765;set=HC	GT:AD:AF:DP	0/1:70,10:0.12:80
chr1	16863173	rs915327	T	C	226.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.102;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=6.878;MLEAC=1;MLEAF=0.500;MQ=56.46;MQRankSum=-7.587;QD=2.25;ReadPosRankSum=2.545;SOR=2.294;set=HC	GT:AD:AF:DP	0/1:89,12:0.12:101
chr1	16863213	rs74057444	C	G	700.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:128,27:0.17:155
chr1	16863229	rs114249125	C	T	1310.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.370;ClippingRankSum=0.000;DB;DP=217;ExcessHet=3.0103;FS=79.484;MLEAC=1;MLEAF=0.500;MQ=56.54;MQRankSum=-13.956;QD=6.07;ReadPosRankSum=-3.406;SOR=6.748;set=HC	GT:AD:AF:DP	0/1:176,40:0.19:216
chr1	16863233	rs115519831	A	C	1532.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.005;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=93.481;MLEAC=1;MLEAF=0.500;MQ=56.23;MQRankSum=-14.680;QD=6.52;ReadPosRankSum=-4.003;SOR=7.122;set=HC	GT:AD:AF:DP	0/1:187,48:0.20:235
chr1	16863238	rs71642021	T	C	1862.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.346;ClippingRankSum=0.000;DB;DP=254;ExcessHet=3.0103;FS=114.983;MLEAC=1;MLEAF=0.500;MQ=55.77;MQRankSum=-15.274;QD=7.39;ReadPosRankSum=-4.882;SOR=7.539;set=HC	GT:AD:AF:DP	0/1:194,58:0.23:252
chr1	16863257	.	A	G	3453.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.454;ClippingRankSum=0.000;DP=394;ExcessHet=3.0103;FS=58.422;MLEAC=1;MLEAF=0.500;MQ=54.98;MQRankSum=-15.125;QD=8.81;ReadPosRankSum=-5.113;SOR=2.684;set=HC	GT:AD:AF:DP	0/1:293,99:0.25:392
chr1	16863257	.	ACT	GCG	2944	.	AC=1;AF=0.500;AN=2;BRF=0.53;FR=0.5000;HP=2;HapScore=1;MGOF=68;MMLQ=24;MQ=49.59;NF=91;NR=7;PP=2944;QD=20;SC=CCGGAAGGACACTTAGGGGAA;SbPval=1.0;Source=Platypus;TC=330;TCF=239;TCR=91;TR=98;WE=16863274;WS=16863247;set=Platypus	GT:AD:AF:DP	0/1:232,98:0.30:330
chr1	16863258	rs140926795	C	A	310.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.648;ClippingRankSum=0.000;DB;DP=406;ExcessHet=3.0103;FS=18.765;MLEAC=1;MLEAF=0.500;MQ=54.94;MQRankSum=-7.135;QD=0.77;ReadPosRankSum=-2.199;SOR=2.797;set=HC	GT:AD:AF:DP	0/1:367,37:0.09:404
chr1	16863259	rs114741004	T	G	5387.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=6.281;ClippingRankSum=0.000;DB;DP=418;ExcessHet=3.0103;FS=46.736;MLEAC=1;MLEAF=0.500;MQ=54.89;MQRankSum=-18.487;QD=12.95;ReadPosRankSum=-6.677;SOR=3.007;set=HC	GT:AD:AF:DP	0/1:264,152:0.37:416
chr1	16863286	rs146804457	T	C	270.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.433;ClippingRankSum=0.000;DB;DP=670;ExcessHet=3.0103;FS=1.825;MLEAC=1;MLEAF=0.500;MQ=55.80;MQRankSum=-7.485;QD=0.41;ReadPosRankSum=-2.060;SOR=1.042;set=HC	GT:AD:AF:DP	0/1:585,82:0.12:667
chr1	16863304	rs61769542	T	C	18732.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.323;ClippingRankSum=0.000;DB;DP=797;ExcessHet=3.0103;FS=11.080;MLEAC=1;MLEAF=0.500;MQ=56.23;MQRankSum=-15.465;QD=23.56;ReadPosRankSum=-3.780;SOR=1.397;set=HC	GT:AD:AF:DP	0/1:330,465:0.58:795
chr1	16863308	rs112689425	G	T	19313.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.114;ClippingRankSum=0.000;DB;DP=814;ExcessHet=3.0103;FS=11.080;MLEAC=1;MLEAF=0.500;MQ=56.28;MQRankSum=-15.274;QD=23.79;ReadPosRankSum=-2.460;SOR=1.378;set=HC	GT:AD:AF:DP	0/1:333,479:0.59:812
chr1	16863313	rs76539488	C	T	7923.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.455;ClippingRankSum=0.000;DB;DP=857;ExcessHet=3.0103;FS=7.205;MLEAC=1;MLEAF=0.500;MQ=56.42;MQRankSum=-11.589;QD=9.27;ReadPosRankSum=-0.181;SOR=1.178;set=HC	GT:AD:AF:DP	0/1:478,377:0.44:855
chr1	16863314	rs74927161	A	G	20743.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.831;ClippingRankSum=0.000;DB;DP=874;ExcessHet=3.0103;FS=9.788;MLEAC=1;MLEAF=0.500;MQ=56.40;MQRankSum=-14.664;QD=23.79;ReadPosRankSum=-2.020;SOR=1.289;set=HC	GT:AD:AF:DP	0/1:338,534:0.61:872
chr1	16863328	rs61769543	T	G	16852.77	.	AC=1;AF=0.500;AN=2;DB;DP=1009;set=Intersection	GT:AD:AF:DP	0/1:350,656:0.65:1006
chr1	16863352	rs61769544	C	T	18735.77	.	AC=1;AF=0.500;AN=2;DB;DP=1070;set=Intersection	GT:AD:AF:DP	0/1:332,735:0.69:1067
chr1	16863398	rs61769545	A	C	10378.77	.	AC=1;AF=0.500;AN=2;DB;DP=877;set=Intersection	GT:AD:AF:DP	0/1:363,499:0.58:862
chr1	16863484	rs199948789	C	A	767.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.557;ClippingRankSum=0.000;DB;DP=203;ExcessHet=3.0103;FS=3.346;MLEAC=1;MLEAF=0.500;MQ=57.29;MQRankSum=-1.154;QD=3.82;ReadPosRankSum=0.643;SOR=1.258;set=HC	GT:AD:AF:DP	0/1:158,43:0.21:201
chr1	16948473	rs446948	C	T	563.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.686;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=2.094;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=0.000;QD=8.67;ReadPosRankSum=0.436;SOR=0.960;set=HC	GT:AD:AF:DP	0/1:37,28:0.43:65
chr1	16948473	.	CC	TG	260	.	AC=1;AF=0.500;AN=2;BRF=0.25;FR=0.5000;HP=1;HapScore=3;MGOF=5;MMLQ=28;MQ=59.3;NF=14;NR=10;PP=260;QD=13.0611614526;SC=AAGTCCTCCTCCTGGGCTGCC;SbPval=0.73;Source=Platypus;TC=57;TCF=30;TCR=27;TR=24;WE=16948482;WS=16948463;set=Platypus	GT:AD:AF:DP	0/1:33,24:0.42:57
chr1	16948474	rs2781579	C	G	1703.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.309;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=4.420;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=0.000;QD=25.81;ReadPosRankSum=0.056;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:13,53:0.80:66
chr1	16950346	rs9663015	A	C	86.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.150;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.30;MQRankSum=-2.484;QD=5.78;ReadPosRankSum=-2.912;SOR=1.075;set=HC	GT:AD:AF:DP	0/1:9,6:0.40:15
chr1	16969246	rs11260857	G	A	1356.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.215;ClippingRankSum=0.000;DB;DP=369;ExcessHet=3.0103;FS=0.445;MLEAC=1;MLEAF=0.500;MQ=59.51;MQRankSum=-6.078;QD=3.78;ReadPosRankSum=-1.089;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:267,92:0.26:359
chr1	16969381	rs9727604	C	T	3690.77	.	AC=1;AF=0.500;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	0/1:229,180:0.44:409
chr1	16973519	rs2501762	G	A	402.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.773;ClippingRankSum=0.000;DB;DP=782;ExcessHet=3.0103;FS=6.936;MLEAC=1;MLEAF=0.500;MQ=50.50;MQRankSum=-2.051;QD=0.52;ReadPosRankSum=-1.147;SOR=1.338;set=HC	GT:AD:AF:DP	0/1:673,103:0.13:776
chr1	16973919	rs141898836	A	G	940.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.959;ClippingRankSum=0.000;DB;DP=238;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=48.16;MQRankSum=-2.412;QD=3.95;ReadPosRankSum=0.765;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:170,68:0.29:238
chr1	16973996	rs200256873	A	G	221.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.591;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.95;MQRankSum=-3.006;QD=2.00;ReadPosRankSum=-2.400;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:89,22:0.20:111
chr1	16974010	rs201140718	G	C	91.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.933;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=2.525;MLEAC=1;MLEAF=0.500;MQ=48.09;MQRankSum=-3.216;QD=1.11;ReadPosRankSum=-2.331;SOR=0.398;set=HC	GT:AD:AF:DP	0/1:69,14:0.17:83
chr1	16974256	.	G	C	688.77	.	AC=1;AF=0.500;AN=2;DP=109;set=Intersection	GT:AD:AF:DP	0/1:77,32:0.29:109
chr1	16974592	rs201212576	C	T	964.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.255;ClippingRankSum=0.000;DB;DP=640;ExcessHet=3.0103;FS=4.745;MLEAC=1;MLEAF=0.500;MQ=58.56;MQRankSum=-10.431;QD=1.51;ReadPosRankSum=2.338;SOR=0.400;set=HC	GT:AD:AF:DP	0/1:530,107:0.17:637
chr1	16974637	rs16854791	T	C	617.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.775;ClippingRankSum=0.000;DB;DP=469;ExcessHet=3.0103;FS=0.744;MLEAC=1;MLEAF=0.500;MQ=58.43;MQRankSum=-4.267;QD=1.32;ReadPosRankSum=-1.366;SOR=0.750;set=HC	GT:AD:AF:DP	0/1:390,77:0.16:467
chr1	16974662	rs28460410	C	A	105.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.663;ClippingRankSum=0.000;DB;DP=372;ExcessHet=3.0103;FS=12.145;MLEAC=1;MLEAF=0.500;MQ=57.66;MQRankSum=-3.155;QD=0.29;ReadPosRankSum=1.338;SOR=1.554;set=HC	GT:AD:AF:DP	0/1:327,43:0.12:370
chr1	16974869	rs4570422	G	C	905.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:111,48:0.30:159
chr1	16975045	rs55763726	G	A	457.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.106;ClippingRankSum=0.000;DB;DP=837;ExcessHet=3.0103;FS=8.716;MLEAC=1;MLEAF=0.500;MQ=53.98;MQRankSum=-11.498;QD=0.55;ReadPosRankSum=-6.236;SOR=1.612;set=HC	GT:AD:AF:DP	0/1:726,106:0.13:832
chr1	16975202	rs28602904	T	C	1696.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.486;ClippingRankSum=0.000;DB;DP=1400;ExcessHet=3.0103;FS=0.723;MLEAC=1;MLEAF=0.500;MQ=53.59;MQRankSum=-8.870;QD=1.21;ReadPosRankSum=1.519;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:1175,222:0.16:1397
chr1	16975230	rs2761535	G	C	25940.77	.	AC=1;AF=0.500;AN=2;DB;DP=1338;set=Intersection	GT:AD:AF:DP	0/1:231,1105:0.83:1336
chr1	16975278	rs111244008	A	ACC	1006.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.923;ClippingRankSum=0.000;DB;DP=1150;ExcessHet=3.0103;FS=0.927;MLEAC=1;MLEAF=0.500;MQ=52.15;MQRankSum=0.058;QD=0.96;ReadPosRankSum=0.756;SOR=0.955;set=HC	GT:AD:AF:DP	0/1:941,108:0.10:1049
chr1	16975689	rs201913540	G	C	253.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.341;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=3.304;MLEAC=1;MLEAF=0.500;MQ=48.58;MQRankSum=-3.381;QD=1.60;ReadPosRankSum=-3.238;SOR=1.140;set=HC	GT:AD:AF:DP	0/1:134,25:0.16:159
chr1	16976032	rs2483047	A	C	1771.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.131;ClippingRankSum=0.000;DB;DP=531;ExcessHet=3.0103;FS=0.632;MLEAC=1;MLEAF=0.500;MQ=56.70;MQRankSum=-0.326;QD=3.37;ReadPosRankSum=-1.764;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:406,120:0.23:526
chr1	16976528	rs376140395	G	T	266.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.268;ClippingRankSum=0.000;DB;DP=203;ExcessHet=3.0103;FS=16.474;MLEAC=1;MLEAF=0.500;MQ=55.23;MQRankSum=-7.588;QD=1.31;ReadPosRankSum=-1.706;SOR=2.121;set=HC	GT:AD:AF:DP	0/1:175,28:0.14:203
chr1	16976539	rs199931165	A	G	381.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.044;ClippingRankSum=0.000;DB;DP=243;ExcessHet=3.0103;FS=24.511;MLEAC=1;MLEAF=0.500;MQ=55.02;MQRankSum=-10.262;QD=1.57;ReadPosRankSum=-3.938;SOR=2.223;set=HC	GT:AD:AF:DP	0/1:200,43:0.18:243
chr1	16976620	rs55885953	A	G	4147.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.522;ClippingRankSum=0.000;DB;DP=755;ExcessHet=3.0103;FS=0.556;MLEAC=1;MLEAF=0.500;MQ=49.26;MQRankSum=-1.480;QD=5.49;ReadPosRankSum=-3.211;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:514,241:0.32:755
chr1	16976641	rs1057417	C	T	935.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.407;ClippingRankSum=0.000;DB;DP=876;ExcessHet=3.0103;FS=0.935;MLEAC=1;MLEAF=0.500;MQ=48.96;MQRankSum=-6.934;QD=1.07;ReadPosRankSum=2.264;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:793,83:0.09:876
chr1	16976649	rs1057333	C	T	970.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.043;ClippingRankSum=0.000;DB;DP=916;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=48.59;MQRankSum=-7.262;QD=1.06;ReadPosRankSum=1.275;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:827,89:0.10:916
chr1	16976679	rs1065528	G	A	7040.77	.	AC=1;AF=0.500;AN=2;DB;DP=779;set=Intersection	GT:AD:AF:DP	0/1:416,363:0.47:779
chr1	16976681	rs3175284	G	T	1854.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.347;ClippingRankSum=0.000;DB;DP=769;ExcessHet=3.0103;FS=1.358;MLEAC=1;MLEAF=0.500;MQ=47.69;MQRankSum=-5.592;QD=2.42;ReadPosRankSum=-0.124;SOR=0.823;set=HC	GT:AD:AF:DP	0/1:600,168:0.22:768
chr1	16976772	rs79425189	G	T	173.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.927;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=0.974;MLEAC=1;MLEAF=0.500;MQ=50.03;MQRankSum=-3.922;QD=1.07;ReadPosRankSum=-2.453;SOR=0.903;set=HC	GT:AD:AF:DP	0/1:139,23:0.14:162
chr1	17017675	rs2743471	C	A	14460.77	.	AC=2;AF=1.00;AN=2;DB;DP=553;set=Intersection	GT:AD:AF:DP	1/1:0,544:1.00:544
chr1	17022952	rs557690	C	A	6637.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;MQ=59.95;set=Intersection	GT:AD:AF:DP	1/1:1,259:1.00:260
chr1	17023110	rs11260887	G	A	1570.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:115,77:0.40:192
chr1	17023126	rs2610633	C	G	2587.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:85,112:0.57:197
chr1	17023143	rs559507	C	T	1910.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:120,93:0.44:213
chr1	17023182	rs614461	C	G	1978.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:116,99:0.46:215
chr1	17023376	rs613579	C	T	3358.77	.	AC=1;AF=0.500;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	0/1:203,169:0.45:372
chr1	17023403	rs10907267	G	A	2656.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:192,138:0.42:330
chr1	17023483	rs563062	C	T	651.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:75,37:0.33:112
chr1	17023509	rs563142	T	C	519.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.207;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=1.479;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=0.000;QD=7.76;ReadPosRankSum=-1.886;SOR=0.349;set=HC	GT:AD:AF:DP	0/1:43,24:0.36:67
chr1	17023509	.	TCC	CCA	234	.	AC=1;AF=0.500;AN=2;BRF=0.29;FR=0.5000;HP=3;HapScore=1;MGOF=25;MMLQ=28;MQ=59.95;NF=1;NR=14;PP=234;QD=19.1645249908;SC=CCTTCCCAACTCCAGATTGGA;SbPval=0.92;Source=Platypus;TC=62;TCF=10;TCR=52;TR=15;WE=17023519;WS=17023499;set=Platypus	GT:AD:AF:DP	1/0:47,15:0.24:62
chr1	17023511	rs563144	C	A	2294.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr1	17025992	rs12026928	G	A	1224.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:36,55:0.60:91
chr1	17026043	.	G	GGCA	3509.73	.	AC=1;AF=0.500;AN=2;DP=169;set=Intersection	GT:AD:AF:DP	0/1:68,94:0.58:162
chr1	17026087	rs678369	G	A	1763.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:79,92:0.54:171
chr1	17026551	rs665763	G	C	185.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.275;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=1.423;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=-1.260;QD=5.63;ReadPosRankSum=-1.588;SOR=0.962;set=HC	GT:AD:AF:DP	0/1:21,12:0.36:33
chr1	17029257	rs12125112	T	C	2174.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.996;ClippingRankSum=0.000;DB;DP=229;ExcessHet=3.0103;FS=0.547;MLEAC=1;MLEAF=0.500;MQ=56.06;MQRankSum=1.310;QD=11.57;ReadPosRankSum=0.197;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:96,92:0.49:188
chr1	17029513	rs523936	C	G	1599.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:70,72:0.51:142
chr1	17030325	rs601893	A	G	574.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:21,21:0.50:42
chr1	17030504	rs601031	T	A	6681.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:121,170:0.58:291
chr1	17030515	rs201665864	G	A	7201.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.616;ClippingRankSum=0.000;DB;DP=307;ExcessHet=3.0103;FS=5.359;MLEAC=1;MLEAF=0.500;MQ=59.83;MQRankSum=0.231;QD=23.61;ReadPosRankSum=0.163;SOR=0.469;set=HC	GT:AD:AF:DP	0/1:128,177:0.58:305
chr1	17030518	rs200139772	CT	TG	7154.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.921;ClippingRankSum=0.000;DB;DP=315;ExcessHet=3.0103;FS=5.251;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=0.215;QD=22.86;ReadPosRankSum=0.158;SOR=0.476;set=HC	GT:AD:AF:DP	0/1:133,180:0.58:313
chr1	17030590	rs590170	G	A	5536.77	.	AC=1;AF=0.500;AN=2;DB;DP=494;set=Intersection	GT:AD:AF:DP	0/1:227,265:0.54:492
chr1	17030729	rs12029338	C	T	1262.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:69,57:0.45:126
chr1	17033758	rs1736691	A	G	1575.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:56,78:0.58:134
chr1	17033854	rs2476568	C	T	2261.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:91,111:0.55:202
chr1	17034041	rs2743505	T	C	1117.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	17034110	rs55767123	C	T	140.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:13,8:0.38:21
chr1	17034250	rs61773400	C	G	131.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.000;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.98;ReadPosRankSum=0.129;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:4,7:0.64:11
chr1	17034268	rs55732718	G	A	131.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:8,6:0.43:14
chr1	17044511	rs2773185	T	C	1437.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr1	17044695	rs2773186	A	G	715.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:30,36:0.55:66
chr1	17046549	rs1755332	G	A	2562.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:113,120:0.52:233
chr1	17046613	rs3856294	C	T	2122.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:106,101:0.49:207
chr1	17083671	rs1057420	C	G	594.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:21,28:0.57:49
chr1	17083685	rs3197973	C	A	649.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.303;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=4.093;MLEAC=1;MLEAF=0.500;MQ=50.39;MQRankSum=0.484;QD=13.26;ReadPosRankSum=-1.500;SOR=1.322;set=HC	GT:AD:AF:DP	0/1:23,26:0.53:49
chr1	17083776	rs56318124	C	A	122.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.471;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=40.45;MQRankSum=0.387;QD=3.96;ReadPosRankSum=0.111;SOR=1.136;set=HC	GT:AD:AF:DP	0/1:24,7:0.23:31
chr1	17083778	rs28455793	C	T	286.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.199;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=11.964;MLEAC=1;MLEAF=0.500;MQ=40.45;MQRankSum=0.629;QD=9.25;ReadPosRankSum=-1.248;SOR=0.021;set=HC	GT:AD:AF:DP	0/1:18,13:0.42:31
chr1	17083807	rs9286084	T	C	823.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.49;QD=32.95;SOR=6.518;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	17083837	rs7798	T	C	227.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.999;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=2.350;MLEAC=1;MLEAF=0.500;MQ=40.22;MQRankSum=-1.608;QD=11.99;ReadPosRankSum=-0.490;SOR=0.250;set=HC	GT:AD:AF:DP	0/1:10,9:0.47:19
chr1	17083872	rs61635893	G	A	56.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.897;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=2.066;MLEAC=1;MLEAF=0.500;MQ=40.18;MQRankSum=2.548;QD=2.47;ReadPosRankSum=1.604;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:18,5:0.22:23
chr1	17083919	rs143067724	G	A	642.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.241;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=18.997;MLEAC=1;MLEAF=0.500;MQ=40.56;MQRankSum=-1.212;QD=22.96;ReadPosRankSum=0.335;SOR=2.209;set=HC	GT:AD:AF:DP	0/1:6,22:0.79:28
chr1	17083929	rs138589297	A	C	146.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.899;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=21.294;MLEAC=1;MLEAF=0.500;MQ=41.20;MQRankSum=0.466;QD=4.32;ReadPosRankSum=-1.048;SOR=1.397;set=HC	GT:AD:AF:DP	0/1:27,7:0.21:34
chr1	17083984	rs71269410	C	T	269.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.867;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=45.13;MQRankSum=-1.424;QD=2.01;ReadPosRankSum=-0.583;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:113,21:0.16:134
chr1	17084006	rs2446544	C	T	3013.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.135;ClippingRankSum=0.000;DB;DP=258;ExcessHet=3.0103;FS=0.558;MLEAC=1;MLEAF=0.500;MQ=46.47;MQRankSum=-7.814;QD=12.15;ReadPosRankSum=0.709;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:124,124:0.50:248
chr1	17084021	rs2446543	C	G	2146.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.713;ClippingRankSum=0.000;DB;DP=326;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.75;MQRankSum=-6.058;QD=6.82;ReadPosRankSum=-1.996;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:211,104:0.33:315
chr1	17084670	rs199536872	A	G	83.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.304;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=1.136;MLEAC=1;MLEAF=0.500;MQ=46.64;MQRankSum=-4.111;QD=0.73;ReadPosRankSum=-1.104;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:101,13:0.11:114
chr1	17084755	rs140682808	T	C	818.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.095;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=4.291;MLEAC=1;MLEAF=0.500;MQ=46.96;MQRankSum=-4.080;QD=16.71;ReadPosRankSum=-2.959;SOR=1.111;set=HC	GT:AD:AF:DP	0/1:18,31:0.63:49
chr1	17084968	rs2761533	G	C	2643.77	.	AC=1;AF=0.500;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	0/1:234,139:0.37:373
chr1	17085165	rs2490828	G	C	3993.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.43;QD=29.37;SOR=0.816;set=HC	GT:AD:AF:DP	1/1:0,136:1.00:136
chr1	17085391	.	G	A	2503.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.578;ClippingRankSum=0.000;DP=472;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=49.62;MQRankSum=12.695;QD=5.32;ReadPosRankSum=1.508;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:322,149:0.32:471
chr1	17085412	rs872964	C	T	3656.77	.	AC=1;AF=0.500;AN=2;DB;DP=512;set=Intersection	GT:AD:AF:DP	0/1:312,199:0.39:511
chr1	17085427	rs2002186	T	C	11900.77	.	AC=1;AF=0.500;AN=2;DB;DP=543;set=Intersection	GT:AD:AF:DP	0/1:168,374:0.69:542
chr1	17085502	rs2329006	T	C	5481.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:99,225:0.69:324
chr1	17085542	rs2261754	G	A	1204.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:142,54:0.28:196
chr1	17085564	rs3851921	A	G	1801.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:111,57:0.34:168
chr1	17085589	rs371449598	AGCGCTG	A	643.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.126;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=14.675;MLEAC=1;MLEAF=0.500;MQ=49.01;MQRankSum=-4.371;QD=5.03;ReadPosRankSum=1.500;SOR=2.221;set=HC	GT:AD:AF:DP	0/1:104,24:0.19:128
chr1	17085671	rs3863806	C	G	492.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.629;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=6.478;MLEAC=1;MLEAF=0.500;MQ=51.34;MQRankSum=-6.377;QD=4.48;ReadPosRankSum=-0.449;SOR=1.129;set=HC	GT:AD:AF:DP	0/1:89,21:0.19:110
chr1	17085677	rs3863805	G	A	394.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.867;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=9.572;MLEAC=1;MLEAF=0.500;MQ=52.20;MQRankSum=-5.899;QD=3.62;ReadPosRankSum=1.525;SOR=1.236;set=HC	GT:AD:AF:DP	0/1:92,17:0.16:109
chr1	17085712	rs3863803	C	T	133.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:91,17:0.16:108
chr1	17085834	rs2005622	G	T	5056.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr1	17085908	rs1805293	C	G	2304.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:171,111:0.39:282
chr1	17085995	.	G	GC	1171.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.445;ClippingRankSum=0.000;DP=132;ExcessHet=3.0103;FS=9.571;MLEAC=1;MLEAF=0.500;MQ=52.78;MQRankSum=-2.417;QD=9.93;ReadPosRankSum=0.076;SOR=0.130;set=HC	GT:AD:AF:DP	0/1:65,53:0.45:118
chr1	17086052	rs1057286	T	C	1171.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.55;QD=23.44;SOR=6.439;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	17086085	rs200532237	G	GC	449.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=38.11;QD=32.12;SOR=5.421;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	17086941	rs28462251	C	T	646.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.734;ClippingRankSum=0.000;DB;DP=298;ExcessHet=3.0103;FS=32.595;MLEAC=1;MLEAF=0.500;MQ=50.74;MQRankSum=1.081;QD=2.21;ReadPosRankSum=-1.709;SOR=2.610;set=HC	GT:AD:AF:DP	0/1:241,51:0.17:292
chr1	17087072	rs79486936	G	A	3567.77	.	AC=1;AF=0.500;AN=2;DB;DP=688;set=Intersection	GT:AD:AF:DP	0/1:477,210:0.31:687
chr1	17087244	rs58502471	AC	A	2379.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.646;ClippingRankSum=0.000;DB;DP=428;ExcessHet=3.0103;FS=1.251;MLEAC=1;MLEAF=0.500;MQ=55.72;MQRankSum=0.714;QD=5.64;ReadPosRankSum=2.380;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:306,116:0.27:422
chr1	17087262	rs2926375	C	T	4044.77	.	AC=1;AF=0.500;AN=2;DB;DP=488;set=Intersection	GT:AD:AF:DP	0/1:287,198:0.41:485
chr1	17087292	rs2179161	A	G	210.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.986;ClippingRankSum=0.000;DB;DP=593;ExcessHet=3.0103;FS=19.608;MLEAC=1;MLEAF=0.500;MQ=58.36;MQRankSum=-18.494;QD=0.36;ReadPosRankSum=-1.253;SOR=3.106;set=HC	GT:AD:AF:DP	0/1:549,43:0.07:592
chr1	17087299	rs2179162	T	C	453.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.992;ClippingRankSum=0.000;DB;DP=607;ExcessHet=3.0103;FS=17.742;MLEAC=1;MLEAF=0.500;MQ=58.83;MQRankSum=-19.915;QD=0.75;ReadPosRankSum=-1.700;SOR=2.427;set=HC	GT:AD:AF:DP	0/1:553,53:0.09:606
chr1	17087305	rs12046578	G	C	592.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.688;ClippingRankSum=0.000;DB;DP=604;ExcessHet=3.0103;FS=16.220;MLEAC=1;MLEAF=0.500;MQ=58.99;MQRankSum=-20.907;QD=0.98;ReadPosRankSum=-1.302;SOR=2.287;set=HC	GT:AD:AF:DP	0/1:545,58:0.10:603
chr1	17087365	rs2446556	C	G	11350.77	.	AC=1;AF=0.500;AN=2;DB;DP=594;set=Intersection	GT:AD:AF:DP	0/1:128,458:0.78:586
chr1	17087459	rs11576695	A	G	1569.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.996;ClippingRankSum=0.000;DB;DP=567;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.26;MQRankSum=-0.949;QD=2.78;ReadPosRankSum=1.507;SOR=0.759;set=HC	GT:AD:AF:DP	0/1:443,122:0.22:565
chr1	17087465	rs11260924	G	A	2685.77	.	AC=1;AF=0.500;AN=2;DB;DP=559;set=Intersection	GT:AD:AF:DP	0/1:401,157:0.28:558
chr1	17087521	rs11589598	G	A	1386.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.505;ClippingRankSum=0.000;DB;DP=566;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.93;MQRankSum=-4.446;QD=2.46;ReadPosRankSum=-1.359;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:448,115:0.20:563
chr1	17087541	rs113982165	GGTGCT	G	4745.73	.	AC=1;AF=0.500;AN=2;DB;DP=514;set=Intersection	GT:AD:AF:DP	0/1:362,141:0.28:503
chr1	17087582	rs10907280	G	A	4087.77	.	AC=1;AF=0.500;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	0/1:219,193:0.47:412
chr1	17087593	rs12145944	C	T	1731.77	.	AC=1;AF=0.500;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	0/1:263,104:0.28:367
chr1	17087682	rs9725203	A	G	356.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:77,24:0.24:101
chr1	17090902	.	A	AT	901.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.254;ClippingRankSum=0.000;DP=342;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.82;MQRankSum=-8.265;QD=2.64;ReadPosRankSum=1.054;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:279,62:0.18:341
chr1	17091129	rs61769748	G	A	32.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;MQ=59.58;set=Intersection	GT:AD:AF:DP	0/1:11,3:0.21:14
chr1	17197571	rs76372883	G	A	3042.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.714;ClippingRankSum=0.000;DB;DP=418;ExcessHet=3.0103;FS=15.353;MLEAC=1;MLEAF=0.500;MQ=56.78;MQRankSum=-17.085;QD=7.30;ReadPosRankSum=-11.071;SOR=1.741;set=HC	GT:AD:AF:DP	0/1:315,102:0.24:417
chr1	17197595	rs201521253	A	C	4908.77	.	AC=1;AF=0.500;AN=2;DB;DP=499;set=Intersection	GT:AD:AF:DP	0/1:339,159:0.32:498
chr1	17197609	rs150993810	T	C	7580.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.246;ClippingRankSum=0.000;DB;DP=551;ExcessHet=3.0103;FS=8.589;MLEAC=1;MLEAF=0.500;MQ=55.47;MQRankSum=-20.088;QD=13.86;ReadPosRankSum=-2.168;SOR=1.223;set=HC	GT:AD:AF:DP	0/1:346,201:0.37:547
chr1	17197610	rs200754171	G	A	1968.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.844;ClippingRankSum=0.000;DB;DP=566;ExcessHet=3.0103;FS=6.016;MLEAC=1;MLEAF=0.500;MQ=55.46;MQRankSum=-15.585;QD=3.50;ReadPosRankSum=0.230;SOR=1.132;set=HC	GT:AD:AF:DP	0/1:422,140:0.25:562
chr1	17197615	rs146936960	C	A	8650.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.448;ClippingRankSum=0.000;DB;DP=567;ExcessHet=3.0103;FS=9.472;MLEAC=1;MLEAF=0.500;MQ=55.29;MQRankSum=-19.849;QD=15.28;ReadPosRankSum=-1.096;SOR=1.106;set=HC	GT:AD:AF:DP	0/1:334,232:0.41:566
chr1	17197619	rs113661539	A	G	8397.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.793;ClippingRankSum=0.000;DB;DP=564;ExcessHet=3.0103;FS=9.454;MLEAC=1;MLEAF=0.500;MQ=55.24;MQRankSum=-19.889;QD=14.92;ReadPosRankSum=0.473;SOR=1.109;set=HC	GT:AD:AF:DP	0/1:330,233:0.41:563
chr1	17197637	rs199790422	A	G	70.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.101;ClippingRankSum=0.000;DB;DP=588;ExcessHet=3.0103;FS=1.814;MLEAC=1;MLEAF=0.500;MQ=55.07;MQRankSum=-7.079;QD=0.12;ReadPosRankSum=1.236;SOR=0.926;set=HC	GT:AD:AF:DP	0/1:517,70:0.12:587
chr1	17197666	rs74055933	T	C	3866.77	.	AC=1;AF=0.500;AN=2;DB;DP=585;set=Intersection	GT:AD:AF:DP	0/1:341,213:0.38:554
chr1	17197690	rs72642967	T	G	12162.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.030;ClippingRankSum=0.000;DB;DP=481;ExcessHet=3.0103;FS=9.945;MLEAC=1;MLEAF=0.500;MQ=53.81;MQRankSum=-18.335;QD=25.45;ReadPosRankSum=2.277;SOR=0.403;set=HC	GT:AD:AF:DP	0/1:170,308:0.64:478
chr1	17197694	rs72642969	G	A	11767.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.230;ClippingRankSum=0.000;DB;DP=454;ExcessHet=3.0103;FS=8.695;MLEAC=1;MLEAF=0.500;MQ=53.86;MQRankSum=-17.940;QD=26.03;ReadPosRankSum=2.608;SOR=0.332;set=HC	GT:AD:AF:DP	0/1:161,291:0.64:452
chr1	17197710	rs114564385	G	C	9549.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.263;ClippingRankSum=0.000;DB;DP=372;ExcessHet=3.0103;FS=17.426;MLEAC=1;MLEAF=0.500;MQ=53.66;MQRankSum=-16.118;QD=25.67;ReadPosRankSum=1.581;SOR=0.289;set=HC	GT:AD:AF:DP	0/1:125,247:0.66:372
chr1	17197715	rs202012907	G	A	9344.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.791;ClippingRankSum=0.000;DB;DP=343;ExcessHet=3.0103;FS=14.734;MLEAC=1;MLEAF=0.500;MQ=53.49;MQRankSum=-15.549;QD=27.24;ReadPosRankSum=1.807;SOR=0.302;set=HC	GT:AD:AF:DP	0/1:117,226:0.66:343
chr1	17197721	.	C	T	1521.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.699;ClippingRankSum=0.000;DP=322;ExcessHet=3.0103;FS=6.309;MLEAC=1;MLEAF=0.500;MQ=53.44;MQRankSum=-6.890;QD=4.73;ReadPosRankSum=-1.662;SOR=0.382;set=HC	GT:AD:AF:DP	0/1:261,61:0.19:322
chr1	17197725	rs75030124	C	G	1432.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.688;ClippingRankSum=0.000;DB;DP=282;ExcessHet=3.0103;FS=5.017;MLEAC=1;MLEAF=0.500;MQ=53.78;MQRankSum=-6.496;QD=5.08;ReadPosRankSum=-1.350;SOR=0.396;set=HC	GT:AD:AF:DP	0/1:232,50:0.18:282
chr1	17197736	.	G	C	761.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.507;ClippingRankSum=0.000;DP=246;ExcessHet=3.0103;FS=3.346;MLEAC=1;MLEAF=0.500;MQ=54.17;MQRankSum=-6.378;QD=3.10;ReadPosRankSum=-2.709;SOR=0.418;set=HC	GT:AD:AF:DP	0/1:201,45:0.18:246
chr1	17197758	rs143100028	C	G	4772.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.177;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=13.706;MLEAC=1;MLEAF=0.500;MQ=54.92;MQRankSum=-10.505;QD=28.24;ReadPosRankSum=-2.377;SOR=0.152;set=HC	GT:AD:AF:DP	0/1:52,117:0.69:169
chr1	17197764	rs150815118	G	C	3634.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.157;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=11.674;MLEAC=1;MLEAF=0.500;MQ=54.36;MQRankSum=-9.613;QD=27.54;ReadPosRankSum=-2.977;SOR=0.153;set=HC	GT:AD:AF:DP	0/1:45,87:0.66:132
chr1	17197766	.	G	A	465.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.435;ClippingRankSum=0.000;DP=142;ExcessHet=3.0103;FS=1.160;MLEAC=1;MLEAF=0.500;MQ=54.11;MQRankSum=-4.185;QD=3.28;ReadPosRankSum=-2.268;SOR=0.844;set=HC	GT:AD:AF:DP	0/1:121,21:0.15:142
chr1	17197771	rs139655267	G	A	3875.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.900;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=6.788;MLEAC=1;MLEAF=0.500;MQ=53.97;MQRankSum=-9.455;QD=28.71;ReadPosRankSum=-3.095;SOR=0.233;set=HC	GT:AD:AF:DP	0/1:42,93:0.69:135
chr1	17197777	rs149102001	T	G	3410.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.104;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.98;MQRankSum=-8.763;QD=30.45;ReadPosRankSum=-2.995;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:37,75:0.67:112
chr1	17197779	rs138448635	G	A	2331.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.361;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=3.905;MLEAC=1;MLEAF=0.500;MQ=52.99;MQRankSum=-5.024;QD=21.01;ReadPosRankSum=-1.298;SOR=0.341;set=HC	GT:AD:AF:DP	0/1:52,59:0.53:111
chr1	17197781	.	CG	C	290.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.783;ClippingRankSum=0.000;DP=104;ExcessHet=3.0103;FS=4.540;MLEAC=1;MLEAF=0.500;MQ=52.95;MQRankSum=-4.385;QD=2.80;ReadPosRankSum=-1.196;SOR=1.678;set=HC	GT:AD:AF:DP	0/1:92,12:0.12:104
chr1	17198518	rs141922545	T	G	460.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.787;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.47;MQRankSum=-1.572;QD=27.10;ReadPosRankSum=-1.463;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:1,16:0.94:17
chr1	17248500	rs6683035	A	G	1517.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	17248532	rs6586566	A	G	2159.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr1	17249395	rs6586567	A	G	8065.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr1	17251055	rs9435703	C	T	1832.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:1,71:0.99:72
chr1	17281003	rs2076606	T	C	1144.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr1	17295679	rs4920574	T	C	2378.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr1	17297289	rs9435656	C	T	168.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	17299013	rs201543544	CA	C	49.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.191;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.90;ReadPosRankSum=-0.398;SOR=0.876;set=HC	GT:AD:AF:DP	0/1:46,9:0.16:55
chr1	17299014	rs6661019	A	C	1066.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:9,46:0.84:55
chr1	17301672	rs761423	T	C	2386.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr1	17301780	rs761422	A	G	3031.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr1	17303589	rs2235932	C	T	4915.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:2,186:0.99:188
chr1	17303792	rs4920588	C	T	421.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	17312743	rs3170740	C	T	2419.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr1	17313157	rs2076605	G	A	1241.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr1	17313343	rs9435659	G	A	1267.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	17313654	rs761421	C	T	5156.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:2,198:0.99:200
chr1	17314942	rs9435662	G	A	6009.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr1	17319011	rs2076603	G	A	6856.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr1	17323449	rs9435736	T	C	174.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	17359676	rs1022580	C	A	1600.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr1	17371152	rs12073028	T	C	1496.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr1	17371494	rs9435745	C	T	315.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	17380497	rs2746462	G	T	2927.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr1	17395480	rs2076599	G	A	2532.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr1	17395521	rs2076598	G	A	5230.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr1	17396498	rs2076596	T	C	1053.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	17396592	rs11581590	G	A	4939.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr1	17396703	rs2076595	T	C	6655.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr1	17398066	rs875219	G	C	3652.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.01;SOR=1.048;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr1	17398069	rs875218	T	C	3652.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.24;SOR=1.003;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr1	17401283	rs3818041	C	T	790.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	17402116	rs3818035	G	T	4074.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr1	17402135	rs3818034	T	C	5085.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr1	17402159	rs3818033	G	A	6328.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr1	17402255	rs3818032	C	T	8204.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:2,308:0.99:310
chr1	17402347	rs2647205	C	T	5933.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr1	17402418	rs3818031	A	G	2776.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr1	17405809	rs2057096	G	A	4925.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:2,187:0.99:189
chr1	17405916	rs2057095	C	T	3034.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr1	17405949	rs2057094	C	T	2191.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr1	17406015	rs2057093	C	T	606.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	17406045	rs2057092	C	T	550.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	17410364	rs1883913	G	A	2325.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr1	17418883	rs2647184	A	G	6098.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr1	17418894	rs2273111	A	G	6232.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr1	17419066	rs11203298	T	C	4183.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:2,151:0.99:153
chr1	17422226	rs2076609	C	T	2514.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr1	17422302	rs2076608	T	C	7140.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr1	17431618	rs11203300	A	G	3602.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr1	17431681	rs2647172	C	A	1768.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr1	17445603	rs112151621	G	T	1877.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:1,68:0.99:69
chr1	17531582	rs2293910	G	A	997.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	17550225	rs3003481	T	C	4065.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr1	17609448	rs2293920	G	T	7583.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr1	17657534	rs11203366	G	A	12127.77	.	AC=2;AF=1.00;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	1/1:2,455:1.00:457
chr1	17657616	rs11203367	T	C	8039.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:1,307:1.00:308
chr1	17660499	rs874881	G	C	3510.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr1	17660660	rs874882	G	A	1213.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	17660697	rs1548323	T	C	675.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	17661128	rs1555658	A	C	1088.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	17661659	rs71575828	C	CAT	773.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	17661805	rs1635594	A	G	2614.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr1	17662541	rs1748034	A	C	1104.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	17662639	rs2240340	T	C	4769.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:2,179:0.99:181
chr1	17662662	rs1748033	T	C	6220.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr1	17662751	rs1621005	C	G	5748.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr1	17662804	rs1748032	C	T	3450.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr1	17662907	rs1748031	A	T	691.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	17664329	rs1748025	C	G	467.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	17664770	rs1635586	A	G	917.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	17668270	rs1748021	A	G	256.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	17674402	rs2240336	C	T	3683.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr1	17674537	rs2240335	C	A	8432.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:3,314:0.99:317
chr1	17707739	rs1204898	T	C	2667.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr1	17718671	rs10709483	AG	A	3472.73	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr1	17721695	.	G	GT	87.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.479;ClippingRankSum=0.000;DP=37;ExcessHet=3.0103;FS=4.866;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=1.492;QD=3.25;ReadPosRankSum=0.603;SOR=0.132;set=HC	GT:AD:AF:DP	0/1:17,10:0.37:27
chr1	17914846	rs1193343	C	T	1478.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr1	17929980	rs1193338	C	G	4338.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:2,161:0.99:163
chr1	17961345	rs34725104	C	T	2583.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr1	17966846	rs61764910	G	A	1363.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	17991052	rs6695710	T	C	4683.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr1	18017522	rs871087	T	C	8664.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:1,330:1.00:331
chr1	18017558	rs871088	A	G	11717.77	.	AC=2;AF=1.00;AN=2;DB;DP=462;set=Intersection	GT:AD:AF:DP	1/1:3,451:0.99:454
chr1	18017704	rs871089	C	T	6441.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr1	18021406	rs905389	T	C	5127.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:2,185:0.99:187
chr1	18023261	rs61764942	G	A	1325.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.62;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	18023290	rs2270979	C	T	2294.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr1	18023365	rs2270978	C	T	5111.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr1	18023509	rs2270977	T	C	5025.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr1	18023690	rs2270976	A	G	6882.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:2,260:0.99:262
chr1	18023997	rs3835471	G	GC	891.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	18152582	rs478698	C	T	7644.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr1	18434902	.	G	A	115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.471;ClippingRankSum=-0.000;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.65;ReadPosRankSum=-0.000;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:8,4:0.33:12
chr1	18434904	rs34958868	A	AC,ATAC	466.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=13;set=Intersection	GT:AF:DP	1/2:0.33,0.67:12
chr1	18691614	rs12079178	T	C	1876.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr1	18691665	rs41300138	G	T	3869.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr1	18702988	rs10796450	T	C	1552.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr1	18703544	rs10465915	G	A	6509.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr1	18704862	rs1043459	A	G	4474.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:1,167:0.99:168
chr1	19071153	rs142874250	C	CGGAT	1111.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.76;SOR=3.098;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	19166294	rs12033832	G	A	5228.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr1	19186129	rs9701796	G	C	5014.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr1	19186260	rs9700646	C	T	1280.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	19186320	rs9701803	G	C	662.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	19202770	rs7550822	T	C	4145.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr1	19204154	rs6426813	G	A	675.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.16;SOR=1.519;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	19204173	rs6426814	A	G	664.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	19208145	rs112548638	G	GGGTTGCCT	5032.73	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr1	19208944	rs28566028	A	G	1005.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	19209543	rs6426611	A	G	1890.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr1	19215834	rs941495	T	C	8410.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr1	19238001	.	TTTTATTTATTTA	T	2122.73	.	AC=2;AF=1.00;AN=2;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	19243589	rs3748586	A	G	4004.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr1	19282981	rs1886768	A	C	591.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	19476307	.	G	GA	175.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.322;ClippingRankSum=0.000;DP=194;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.03;ReadPosRankSum=1.244;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:136,34:0.20:170
chr1	19513570	rs59833909	TTA	T	239.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.021;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.05;ReadPosRankSum=1.069;SOR=0.956;set=HC	GT:AD:AF:DP	0/1:23,11:0.32:34
chr1	19578192	rs2294942	G	A	2207.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr1	19581442	.	GA	G	163.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.853;ClippingRankSum=0.000;DP=101;ExcessHet=3.0103;FS=2.174;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.624;QD=1.88;ReadPosRankSum=-0.267;SOR=0.434;set=HC	GT:AD:AF:DP	0/1:63,24:0.28:87
chr1	19582563	rs1557133	G	A	2445.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr1	19583400	rs1774075	A	G	548.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	19583734	rs4912057	G	A	1814.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr1	19595137	rs2235795	C	T	4637.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr1	19595892	rs6665423	G	A	5807.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:1,193:0.99:194
chr1	19596124	rs2235794	C	T	1373.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	19596156	rs6665756	G	T	1858.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr1	19597420	rs12046875	G	T	3057.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr1	19609254	rs1738025	T	C	7902.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:2,294:0.99:296
chr1	19609437	rs12070508	T	C	1140.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.87;QD=34.57;SOR=7.054;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	19609522	rs140599506	G	A	378.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.85;QD=29.14;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	19611241	rs1738023	T	C	12612.77	.	AC=2;AF=1.00;AN=2;DB;DP=466;set=Intersection	GT:AD:AF:DP	1/1:0,458:1.00:458
chr1	19638309	rs2227295	A	G	283.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	19650982	rs41264065	C	T	1110.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	19651102	rs41264067	A	G	7169.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:1,276:1.00:277
chr1	19651277	rs41264069	G	A	2619.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr1	19651300	rs41264071	T	C	1811.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr1	19651330	rs41264073	C	T	781.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	19652063	rs11558390	G	A	2862.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr1	19652127	rs199660210	AGTT	A	3461.73	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.96;SOR=0.828;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr1	19652128	.	GT	G	1310	.	AC=2;AF=1.00;AN=2;BRF=0.53;FR=1.0000;HP=2;HapScore=1;MGOF=16;MMLQ=20;MQ=60.0;NF=6;NR=25;PP=1310;QD=43.8397064474;SC=GCAGGGGGCAGTTGTGGGGGG;SbPval=0.67;Source=Platypus;TC=32;TCF=7;TCR=25;TR=31;WE=19652143;WS=19652118;set=Platypus	GT:AD:AF:DP	1/1:1,31:0.97:32
chr1	19652135	.	G	GGT	3492.73	.	AC=2;AF=1.00;AN=2;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.78;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr1	19652684	rs41264077	G	C	788.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:2,31:0.94:33
chr1	19653256	rs7553611	A	G	1631.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	19654023	.	A	ATCCCTCCC	231.80	.	AC=2;AF=1.00;AN=2;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	19746332	rs41264091	A	T	604.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	19923313	rs4912130	T	A	144.79	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:2,7:0.78:9
chr1	19935118	rs138778783	T	TA	1206.73	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	19981451	rs3828101	A	G	603.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	19981791	rs2294630	A	G	6654.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:2,252:0.99:254
chr1	20020993	rs4370779	AC	GT	9437.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr1	20064136	.	A	G	257.78	.	AC=2;AF=1.00;AN=2;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	20066485	rs6426824	G	A	8032.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.38;SOR=0.923;set=HC	GT:AD:AF:DP	1/1:0,181:1.00:181
chr1	20066490	rs6426825	T	C	8057.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.27;SOR=0.935;set=HC	GT:AD:AF:DP	1/1:0,182:1.00:182
chr1	20067186	rs12065466	T	C	2573.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr1	20073146	rs36067693	G	A	1020.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	20097941	rs10917536	G	T	2928.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr1	20107018	rs12035882	G	A	3430.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr1	20141528	rs1541185	C	T	3436.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr1	20216860	rs10799593	G	A	4535.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr1	20221013	rs372964689	TCTAAGTCAG	T	4109.73	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr1	20221029	rs199563201	G	GA	4005.73	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr1	20305065	rs10732279	C	T	1483.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr1	20395401	rs11573185	C	A	2926.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr1	20446170	rs11298078	GT	G	1656.73	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.30;QD=25.49;SOR=2.904;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr1	20474812	rs150487984	C	T	5814.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:2,242:0.99:244
chr1	20637043	rs12726937	C	T	3428.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr1	20637374	rs10916761	T	C	3758.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:2,132:0.99:134
chr1	20649814	rs4655194	T	C	6114.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr1	20654295	rs144031820	G	A	2548.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr1	20657352	rs2072753	T	C	6101.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr1	20671833	rs10799629	C	A	1494.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr1	20671961	rs11582960	G	A	3573.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr1	20672101	rs4655200	C	T	2160.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr1	20676597	rs41264539	G	A	1544.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr1	20676932	rs179471	T	A	572.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	20677490	rs80211240	C	A	1599.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr1	20678394	rs41265045	G	A	1273.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	20680718	rs2072751	G	A	3073.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr1	20680760	rs230180	A	G	2087.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.83;SOR=1.712;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr1	20827216	rs595980	C	T	4190.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr1	20829808	rs60519890	TA	T	487.73	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:9,32:0.78:41
chr1	20931601	rs144224977	T	TATTC	3058.73	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:3,73:0.96:76
chr1	20940258	rs488991	T	A	1406.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr1	20964328	rs2298298	A	G	1354.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	20971937	rs141923445	G	A	206.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	20972048	rs3131713	G	A	2706.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr1	20972111	rs3738136	G	A	4761.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr1	20977000	rs1043424	A	C	2480.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr1	20977221	rs686658	A	T	1148.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	20978832	rs6893	T	C	1966.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr1	20979580	rs12410193	T	G	919.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	20981806	rs592851	G	A	1578.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr1	20987873	rs537816	G	C	4917.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr1	21024901	rs522496	C	T	3247.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr1	21030902	rs900039	G	T	2363.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:2,87:0.98:89
chr1	21040079	rs10799661	C	A	3911.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr1	21042300	rs554111	C	G	502.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	21043913	rs604659	T	C	3934.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr1	21043926	rs604645	T	C	4716.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr1	21044161	rs601329	A	G	5885.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr1	21044219	rs601392	A	C	2279.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr1	21050958	rs592060	C	T	6418.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr1	21083867	rs58898561	T	TA	580.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.60;QD=34.16;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	21083870	.	T	A	589.77	.	AC=2;AF=1.00;AN=2;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.60;QD=34.69;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	21099846	rs589755	A	G	790.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	21102502	rs11459072	C	CA	42.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.457;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.27;ReadPosRankSum=1.026;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:4,6:0.60:10
chr1	21106204	rs200327876	G	GAA	441.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.255;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.72;ReadPosRankSum=0.150;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:7,23:0.77:30
chr1	21143774	rs12126757	A	T	695.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.99;SOR=2.925;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	21167404	rs2230573	A	G	3440.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr1	21174429	rs17449243	T	C	1503.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr1	21175855	rs7525082	C	A	981.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:1,32:0.97:33
chr1	21179969	rs7542882	G	A	953.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	21188871	rs17409373	C	A	2389.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr1	21219050	rs6685306	C	T	1238.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	21295864	rs2271115	C	T	507.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	21299363	rs6700718	C	A	399.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	21325360	rs885363	C	A	1331.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	21327637	rs1395508	C	T	5639.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr1	21377314	rs6426663	C	T	835.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	21494634	rs61779121	C	T	414.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	21502724	rs34197724	TGCC	T	4595.73	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr1	21502956	.	G	T	1738.77	.	AC=2;AF=1.00;AN=2;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.95;SOR=1.066;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr1	21554319	rs6426676	A	G	619.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	21671943	rs2072654	T	G	1407.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr1	21751142	rs150916531	A	G	1120.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.343;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=2.863;MLEAC=1;MLEAF=0.500;MQ=46.63;MQRankSum=-6.334;QD=11.21;ReadPosRankSum=0.368;SOR=1.081;set=HC	GT:AD:AF:DP	0/1:52,48:0.48:100
chr1	21751214	rs72476501	G	A	3862.77	.	AC=1;AF=0.500;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	0/1:206,193:0.48:399
chr1	21752682	rs71512992	G	A	329.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.572;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.58;MQRankSum=-5.259;QD=6.60;ReadPosRankSum=0.855;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:31,19:0.38:50
chr1	21752766	rs144829292	A	G	441.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.873;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=3.001;MLEAC=1;MLEAF=0.500;MQ=47.70;MQRankSum=-6.452;QD=4.85;ReadPosRankSum=0.284;SOR=1.054;set=HC	GT:AD:AF:DP	0/1:63,28:0.31:91
chr1	21752782	rs140348908	T	G	425.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.257;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=4.731;MLEAC=1;MLEAF=0.500;MQ=47.72;MQRankSum=-5.994;QD=5.01;ReadPosRankSum=1.086;SOR=1.312;set=HC	GT:AD:AF:DP	0/1:60,25:0.29:85
chr1	21752830	rs139145324	C	T	230.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.231;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=1.384;MLEAC=1;MLEAF=0.500;MQ=47.37;MQRankSum=-3.403;QD=6.79;ReadPosRankSum=0.321;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:21,13:0.38:34
chr1	21753562	rs146549873	A	C	110.03	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.95;QD=27.51;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	21754996	rs12024079	C	T	610.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.41;QD=26.56;SOR=1.708;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	21755055	rs12024104	C	A	479.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.63;QD=29.99;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	21755135	rs41302024	T	G	284.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=31.64;SOR=4.615;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	21755347	rs41310392	C	T	2685.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr1	21755453	rs3856177	G	A	670.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.89;QD=30.49;SOR=2.737;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	21755539	rs3855556	C	A	307.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=30.78;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	21755756	rs56343055	G	C	4418.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr1	21755867	rs7522332	A	G	3486.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr1	21755906	rs3738922	G	A	2453.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr1	21756008	rs3894725	G	T	766.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	21756069	rs7532750	G	A	357.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	21795388	rs1827293	A	G	4636.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr1	21799489	rs1971327	T	C	1289.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	21799823	rs1971328	A	G	1544.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	21800185	rs7520015	T	G	1491.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	21801346	rs7531217	G	A	1875.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	21804815	rs7535654	T	G	890.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	21805730	rs2316504	A	G	1102.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	21807367	rs201117263	TA	T	250.75	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.36;QD=31.34;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	21808159	rs71512991	G	A	2297.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.290;ClippingRankSum=0.000;DB;DP=227;ExcessHet=3.0103;FS=2.271;MLEAC=1;MLEAF=0.500;MQ=47.10;MQRankSum=-5.528;QD=10.21;ReadPosRankSum=0.911;SOR=0.858;set=HC	GT:AD:AF:DP	0/1:111,114:0.51:225
chr1	21808207	rs146564096	A	C	1486.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.441;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=0.659;MLEAC=1;MLEAF=0.500;MQ=46.66;MQRankSum=-4.394;QD=10.54;ReadPosRankSum=-1.752;SOR=0.777;set=HC	GT:AD:AF:DP	0/1:73,68:0.48:141
chr1	21808223	rs145079058	T	C	727.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.047;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=3.317;MLEAC=1;MLEAF=0.500;MQ=45.80;MQRankSum=-3.426;QD=8.88;ReadPosRankSum=0.957;SOR=1.127;set=HC	GT:AD:AF:DP	0/1:49,33:0.40:82
chr1	21809750	rs202069483	T	C	919.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=4.011;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=8.826;MLEAC=2;MLEAF=1.000;MQ=39.96;MQRankSum=-2.862;QD=30.66;ReadPosRankSum=-0.729;SOR=5.283;set=HC	GT:AD:AF:DP	1/1:2,28:0.93:30
chr1	21889635	rs1780316	T	C	6347.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:2,249:0.99:251
chr1	21890464	rs1767428	A	G	2467.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.47;SOR=6.439;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr1	21900420	rs2275370	A	G	1628.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr1	21925077	rs61775975	C	T	431.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	21925108	rs2794278	T	C	380.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	21926187	rs1767445	C	T	797.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	21929260	rs829368	A	G	3824.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr1	21929456	rs3215988	GC	G	1122.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	21930542	rs3767111	C	T	1590.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr1	21932530	rs1767443	C	A	1566.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr1	21932625	rs2275365	G	A	3253.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr1	21934667	rs829371	G	A	5986.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr1	21935492	rs61775976	C	T	1325.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	21935884	rs34097078	GA	G	635.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.125;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=0.958;QD=9.63;ReadPosRankSum=2.173;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:17,49:0.74:66
chr1	21938375	rs2275364	T	G	1476.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr1	21939493	rs3767113	G	C	3462.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr1	21940555	rs2275363	C	T	3429.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr1	21944045	rs748489	C	G	872.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	21944397	rs1318235	A	G	5969.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr1	21946415	rs1681255	G	A	3368.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr1	21953304	rs1531829	G	A	9141.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:2,340:0.99:342
chr1	21953436	rs829412	A	G	12755.77	.	AC=2;AF=1.00;AN=2;DB;DP=491;set=Intersection	GT:AD:AF:DP	1/1:0,483:1.00:483
chr1	21961091	rs829380	C	T	1472.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	21961339	rs10799706	A	T	6549.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:2,248:0.99:250
chr1	22013561	rs829420	C	A	759.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	22030189	rs829372	T	C	1448.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr1	22032472	rs11426922	A	AT	905.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	22032570	rs333173	T	G	3793.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr1	22033228	rs56167338	G	A	5721.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr1	22050649	rs2275668	C	A	3225.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr1	22063149	rs10753517	G	A	1414.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:2,55:0.96:57
chr1	22082923	rs10458384	G	A	1253.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	22082967	rs35545280	CA	C	789.70	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.465;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.68;ReadPosRankSum=1.362;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:17,74:0.81:91
chr1	22141206	rs10917051	A	C	4981.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:1,176:0.99:177
chr1	22149935	rs897467	T	C	5230.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr1	22150257	rs3736357	C	T	2125.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr1	22157689	rs3736355	G	A	8483.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chr1	22158363	rs4654771	G	A	445.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	22160148	rs7547731	C	T	1380.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	22161635	rs11338283	CT	C	57.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.038;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.34;ReadPosRankSum=0.260;SOR=0.479;set=HC	GT:AD:AF:DP	0/1:31,12:0.28:43
chr1	22168216	rs7556412	C	T	1875.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr1	22174600	rs3767138	A	G	2992.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr1	22177119	rs61777200	A	G	538.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	22179673	rs12049614	T	C	1911.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr1	22180244	.	A	AAAAAT	2182.73	.	AC=2;AF=1.00;AN=2;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.45;SOR=1.464;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	22180548	rs12117402	T	C	7666.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr1	22183471	rs12024579	A	C	3109.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr1	22183739	rs2305562	A	G	10472.77	.	AC=2;AF=1.00;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	1/1:0,376:1.00:376
chr1	22186234	rs10917056	A	G	1943.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr1	22191454	rs897471	G	A	3919.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr1	22199081	rs2501266	A	T	461.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	22199245	rs2229482	C	T	2941.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:2,110:0.98:112
chr1	22199821	rs2454290	G	A	4115.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr1	22200067	rs2247741	A	G	1633.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr1	22200082	rs2445136	T	C	1239.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	22200835	rs2445135	C	G	194.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	22202109	rs2501265	C	T	1544.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr1	22203259	rs2454295	A	G	2350.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr1	22205408	rs2454294	T	C	784.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	22205466	rs2454293	T	C	1457.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:3,59:0.95:62
chr1	22206649	rs989994	T	C	3754.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr1	22206942	rs1874793	G	A	6077.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr1	22207235	rs1874792	T	C	2655.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr1	22207804	rs139046040	ACCCAGGGTGGCAG	A	7997.73	.	AC=2;AF=1.00;AN=2;DB;DP=185;MQ=60.06;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr1	22208030	rs921847	C	T	753.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	22211222	rs4654994	T	C	5936.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr1	22215088	rs2445140	T	C	1825.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr1	22216574	rs2254358	C	A	6006.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr1	22216604	rs2254357	C	G	5433.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr1	22217108	rs2501260	G	A	15355.77	.	AC=2;AF=1.00;AN=2;DB;DP=577;set=Intersection	GT:AD:AF:DP	1/1:0,575:1.00:575
chr1	22304428	rs12074015	CC	GT	466.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=39.91;QD=42.43;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	22304463	rs12058649	A	G	667.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.91;QD=33.39;SOR=1.721;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	22307340	rs7528228	C	T	631.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	22307358	rs7528300	C	G	795.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	22307538	rs7528405	C	T	2412.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr1	22310080	rs10799723	G	A	924.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	22310139	rs10733031	T	G	3818.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.90;QD=44.93;SOR=1.694;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr1	22310145	rs10733032	C	T	3926.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.44;QD=43.63;SOR=1.584;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr1	22310262	rs10733033	G	C	5945.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr1	22310411	rs28468423	A	G	4274.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.65;QD=43.62;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,98:1.00:98
chr1	22310411	.	AGA	GGG	2947	.	AC=2;AF=1.00;AN=2;BRF=0.41;FR=1.0000;HP=2;HapScore=1;MGOF=5;MMLQ=24;MQ=48.01;NF=28;NR=48;PP=2947;QD=20;SC=CACCAAGACCAGACCTTGTAC;SbPval=0.66;Source=Platypus;TC=86;TCF=34;TCR=52;TR=76;WE=22310421;WS=22310401;set=Platypus	GT:AD:AF:DP	1/1:10,76:0.88:86
chr1	22310413	rs7549398	A	G	4274.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.00;QD=46.46;SOR=0.982;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr1	22310662	rs6426735	G	T	15746.77	.	AC=2;AF=1.00;AN=2;DB;DP=598;set=Intersection	GT:AD:AF:DP	1/1:0,596:1.00:596
chr1	22310674	rs7538207	C	T	14788.77	.	AC=2;AF=1.00;AN=2;DB;DP=561;set=Intersection	GT:AD:AF:DP	1/1:0,559:1.00:559
chr1	22310725	rs3820287	G	C	8912.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:0,342:1.00:342
chr1	22310824	rs1803531	T	C	1562.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr1	22313161	rs1803530	T	C	4945.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr1	22313197	rs34963341	C	A	3309.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr1	22315738	rs4655006	C	T	2221.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.22;QD=28.85;SOR=2.043;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr1	22329062	rs143337942	CC	GT	3670.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;JOINED;set=Intersection	GT:AD:AF:DP	0/1:134,97:0.42:231
chr1	22329414	rs10917107	G	A	1888.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr1	22333595	rs3820290	G	A	2736.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr1	22336277	rs3820285	C	G	5817.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr1	22336333	.	A	G	4781.77	.	AC=2;AF=1.00;AN=2;DP=201;set=Intersection	GT:AD:AF:DP	1/1:10,191:0.95:201
chr1	22336371	rs3806297	C	A	3456.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr1	22405379	.	CTT	C	163.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.438;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.44;ReadPosRankSum=0.727;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:12,10:0.45:22
chr1	22408106	rs2501282	G	A	3820.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr1	22447148	rs12756110	G	C	620.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	22447645	rs41420150	C	CTG	1755.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	22818139	.	A	AT	132.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.147;ClippingRankSum=0.000;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=1.307;QD=2.89;ReadPosRankSum=0.157;SOR=0.833;set=HC	GT:AD:AF:DP	0/1:29,17:0.37:46
chr1	22846709	rs209720	G	A	3821.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr1	22924783	rs11586741	C	T	2081.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr1	22925292	rs664340	C	G	6249.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr1	22928008	.	AG	A	97.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.055;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=1.621;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.81;ReadPosRankSum=-0.023;SOR=0.333;set=HC	GT:AD:AF:DP	0/1:44,10:0.19:54
chr1	22987958	rs10580	A	G	2405.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr1	23045943	rs2869513	A	G	1907.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr1	23101688	rs1561624	T	G	2556.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr1	23107811	rs71020449	TA	T	314.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.278;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.49;MQRankSum=1.018;QD=8.07;ReadPosRankSum=0.651;SOR=0.957;set=HC	GT:AD:AF:DP	0/1:10,29:0.74:39
chr1	23108089	rs2817904	A	G	872.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	23219493	rs309472	T	C	8714.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr1	23289568	rs10799777	T	C	2260.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr1	23291582	rs4655138	G	A	850.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	23342193	rs10917344	C	G	689.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	23342362	rs681648	A	G	1644.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr1	23380198	rs579785	A	G	1650.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr1	23399932	rs967605	C	T	4306.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr1	23405794	rs2072945	A	C	737.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	23405872	rs2072944	T	C	352.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	23408923	.	AT	A	69.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.125;ClippingRankSum=0.000;DP=48;ExcessHet=3.0103;FS=1.730;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.25;ReadPosRankSum=-1.295;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:20,11:0.35:31
chr1	23409538	rs2235546	G	A	1902.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr1	23418153	rs10799790	C	T	5592.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr1	23419261	rs477717	G	A	6042.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr1	23419374	rs3765407	G	T	11489.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.02;SOR=0.902;set=HC	GT:AD:AF:DP	1/1:0,261:1.00:261
chr1	23419383	rs477830	C	T	11737.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.47;SOR=0.921;set=HC	GT:AD:AF:DP	1/1:0,270:1.00:270
chr1	23419855	rs1983965	T	C	3220.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr1	23664511	rs11586100	T	G	284.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	23688933	rs2849028	A	G	6127.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr1	23693422	rs2849025	T	C	1609.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr1	23696152	rs665977	G	A	2794.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr1	23710805	rs605468	A	G	2869.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr1	23713952	rs676363	T	G	2583.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr1	23720260	rs2486078	T	G	1286.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	23724183	rs2275355	C	T	2044.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr1	23735241	rs1198423	G	T	1185.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	23743581	rs2156087	C	G	709.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	23751140	rs71514235	G	T	11865.77	.	AC=2;AF=1.00;AN=2;DB;DP=437;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.53;SOR=0.847;set=HC	GT:AD:AF:DP	1/1:0,431:1.00:431
chr1	23755513	rs1198430	T	C	2417.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr1	23758134	rs1198434	A	G	42.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr1	23758498	rs11438812	T	TA	316.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=63.27;QD=24.36;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	23765472	rs1767148	A	G	1493.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	23768425	rs41268119	A	G	357.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	23810658	rs71514236	G	A	653.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.15;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	23885498	rs11574	T	C	2858.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr1	23885599	rs2067053	T	C	4628.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr1	23908221	rs10582147	CT	C	58.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.295;ClippingRankSum=-0.000;DB;DP=34;ExcessHet=3.0103;FS=6.264;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.90;ReadPosRankSum=0.086;SOR=2.022;set=HC	GT:AD:AF:DP	0/1:3,9:0.75:12
chr1	23954126	rs34020220	T	TAC	1623.75	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:6,50:0.89:56
chr1	23955186	.	T	TTTATTATTATTATTATTA,TTTA	1029.73	.	AC=2,0;AF=1.00,0.00;AN=2;DP=63;set=Intersection	GT:AF:DP	1/1:1.00:26
chr1	24018277	rs10917413	C	G	5715.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr1	24085964	.	AC	TA	9877.77	.	AC=2;AF=1.00;AN=2;DP=221;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr1	24106510	rs3831910	A	AT	1428.73	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr1	24122986	rs760941	C	T	1344.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.74;QD=19.49;SOR=5.640;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr1	24124801	.	CT	C	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.438;ClippingRankSum=0.000;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=2.028;QD=0.74;ReadPosRankSum=-0.349;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:35,13:0.27:48
chr1	24133612	rs1018396	G	A	3635.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr1	24134721	rs719400	T	C	5898.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr1	24143932	rs2076344	A	G	2645.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr1	24172765	rs11456086	C	CT	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.351;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.27;ReadPosRankSum=-0.589;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:23,9:0.28:32
chr1	24180806	.	T	TA	148.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.247;ClippingRankSum=0.000;DP=83;ExcessHet=3.0103;FS=1.238;MLEAC=1;MLEAF=0.500;MQ=59.40;MQRankSum=-1.505;QD=1.84;ReadPosRankSum=-0.555;SOR=0.429;set=HC	GT:AD:AF:DP	0/1:62,19:0.23:81
chr1	24186460	rs370615681	AT	A	62.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.805;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=1.015;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.60;ReadPosRankSum=-2.364;SOR=0.949;set=HC	GT:AD:AF:DP	0/1:85,20:0.19:105
chr1	24200903	rs2229586	G	C	640.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	24200921	rs2229585	T	C	833.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	24200969	rs2229584	T	C	2125.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	24200983	rs2229583	C	T	2286.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr1	24201094	rs2229581	G	C	4239.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr1	24201109	rs2229580	C	T	5139.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:2,183:0.99:185
chr1	24201262	rs2502993	A	G	9457.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:0,346:1.00:346
chr1	24201357	rs4649124	A	G	5482.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:2,188:0.99:190
chr1	24201448	rs3003336	C	T	5724.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr1	24201643	rs2501431	G	A	3225.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:1,118:0.99:119
chr1	24201919	rs2502992	TT	CC	8949.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr1	24255844	rs71575785	C	CTATTATTATTAT	718.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.28;SOR=2.712;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	24288476	rs72540327	T	C	219.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	24294249	rs146630384	C	T	117.90	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.15;QD=23.58;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	24294450	rs200961364	C	CA	374.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.768;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=1.378;MLEAC=1;MLEAF=0.500;MQ=49.26;MQRankSum=-3.908;QD=7.81;ReadPosRankSum=0.658;SOR=0.437;set=HC	GT:AD:AF:DP	0/1:19,29:0.60:48
chr1	24294587	rs145191744	G	A	179.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.75;QD=29.97;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	24385331	rs79420391	G	T	1166.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	24388371	rs4649168	T	C	1499.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	24397473	rs34631595	G	GC	854.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	24400584	rs6660949	G	C	3274.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr1	24400633	rs10903083	C	G	4659.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr1	24406535	rs35446243	G	A	7413.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:3,281:0.99:284
chr1	24416059	rs4393101	T	C	2940.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr1	24434595	rs11249170	T	C	5776.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr1	24447214	rs3795300	G	A	2792.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr1	24454902	rs79895649	C	T	794.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	24460797	rs17852649	T	G	2207.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr1	24484441	rs946671	A	G	1538.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr1	24485518	rs10751769	T	C	2708.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr1	24485813	rs4649194	T	C	2053.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr1	24485941	rs4649195	T	C	2919.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr1	24486216	rs34545094	GT	G	474.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	24513608	rs12094257	C	T	237.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	24513768	rs4090311	G	A	957.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	24513924	.	AGGG	A	47.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.204;ClippingRankSum=-0.000;DP=9;ExcessHet=3.0103;FS=3.136;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.82;ReadPosRankSum=1.718;SOR=1.492;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr1	24780521	.	C	CTT	44.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.403;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;FS=3.329;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.28;ReadPosRankSum=-1.472;SOR=0.947;set=HC	GT:AD:AF:DP	0/1:25,10:0.29:35
chr1	24927561	rs4553122	T	C	1686.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr1	24969973	.	ACC	A	531.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.718;ClippingRankSum=0.000;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.54;ReadPosRankSum=1.738;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:1,17:0.94:18
chr1	24989762	rs4649011	G	T	2822.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr1	25072123	rs146532129	G	C	949.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.38;SOR=0.927;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	25140825	rs3890756	A	G	1261.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:1,49:0.98:50
chr1	25153692	rs4649022	G	A	2616.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr1	25234062	rs34878696	T	G	545.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	25255850	rs79784290	C	G	17284.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.716;ClippingRankSum=0.000;DB;DP=667;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.03;ReadPosRankSum=1.755;SOR=0.730;set=HC	GT:AD:AF:DP	1/1:2,662:1.00:664
chr1	25350186	rs416365	G	C	370.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	25570550	rs5773124	A	AT	683.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:7,40:0.85:47
chr1	25634205	rs2257611	G	A	3119.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr1	25648349	rs28669938	T	C	3412.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr1	25678238	rs3093616	T	A	2296.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr1	25717365	rs609320	C	G	6437.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr1	25747230	rs586178	G	C	1101.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.81;QD=32.40;SOR=4.804;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	25893221	rs4523506	G	T	1534.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	25893242	rs4418583	TG	CA	3526.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr1	26085048	rs11321223	AG	A	5060.73	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr1	26090072	rs807270	A	G	2222.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr1	26098107	rs2072747	G	A	2692.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr1	26098333	rs807264	G	A	2809.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr1	26107688	rs807273	C	A	3457.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr1	26109237	rs12567324	A	G	4267.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:1,147:0.99:148
chr1	26110065	rs3820514	A	G	4696.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr1	26110143	rs3767877	G	A	9323.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:0,348:1.00:348
chr1	26127020	rs13373825	G	A	461.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.65;SOR=1.493;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	26127425	rs6659086	G	A	1950.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr1	26131654	rs7349185	G	A	2078.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr1	26138136	rs760598	C	A	10748.77	.	AC=2;AF=1.00;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	1/1:2,404:1.00:406
chr1	26138262	rs760597	T	C	5795.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr1	26139137	rs10902685	C	T	768.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	26139392	rs3738451	A	G	1704.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr1	26139444	rs10751726	G	A	844.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	26139919	rs6676509	C	T	344.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	26140573	rs2294228	C	A	5574.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:1,207:1.00:208
chr1	26146884	rs984412	C	G	2476.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr1	26150023	rs11247758	C	T	2406.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr1	26152666	rs6598923	T	C	2287.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr1	26152758	rs6598924	A	G	5517.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:2,214:0.99:216
chr1	26227608	.	CAA	C	310.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.561;ClippingRankSum=0.000;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.09;ReadPosRankSum=1.775;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:28,23:0.45:51
chr1	26310394	rs2275102	A	G	2401.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr1	26314564	rs2245979	T	C	981.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	26349245	rs35744844	C	T	4587.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:1,163:0.99:164
chr1	26349967	rs1938405	C	T	2285.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr1	26357656	rs2736831	C	A	13589.77	.	AC=2;AF=1.00;AN=2;DB;DP=522;set=Intersection	GT:AD:AF:DP	1/1:2,520:1.00:522
chr1	26357855	rs2802321	A	G	6486.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr1	26358752	rs5773143	T	TA	5352.73	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr1	26365374	rs4659404	T	G	1071.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	26365549	rs2997452	C	T	3324.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr1	26372144	rs6686190	A	G	1707.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr1	26383645	rs144384652	CCAGGGGT	C	3375.73	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr1	26487940	rs3748856	A	G	10224.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	1/1:0,379:1.00:379
chr1	26496455	rs2232648	C	T	2726.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr1	26510439	rs12733981	G	A	80.03	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.23;QD=20.01;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	26511700	rs2783680	A	G	4346.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr1	26524706	rs9970046	A	G	4026.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr1	26527783	rs6703730	G	A	756.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	26528181	.	C	CTTT	238.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.742;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;FS=4.607;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.18;ReadPosRankSum=0.189;SOR=2.833;set=HC	GT:AD:AF:DP	0/1:9,17:0.65:26
chr1	26596080	rs7550997	G	A	532.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	26597435	rs4659419	G	A	4595.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr1	26597673	rs11247894	G	A	243.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	26601570	rs11577318	A	G	2848.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr1	26606174	rs10902732	A	C	1901.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr1	26607726	rs7544	T	G	1911.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr1	26608761	rs12354062	C	T	2064.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr1	26608814	rs6672357	A	G	3100.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr1	26608835	.	ACCGGGACCGGGACTGGGG	A	2979	.	AC=1;AF=0.500;AN=2;BRF=0.45;FR=0.5000;HP=3;HapScore=1;MGOF=69;MMLQ=21;MQ=58.92;NF=21;NR=9;PP=2979;QD=20;SC=TGGGGCCGGGACCGGGACCGG;SbPval=0.56;Source=Platypus;TC=50;TCF=35;TCR=15;TR=30;WE=26608860;WS=26608825;set=Platypus	GT:AD:AF:DP	0/1:20,30:0.60:50
chr1	26608848	.	CTGGGGCCGGG	C	4102.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.08;SOR=2.033;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr1	26608859	.	ACCGGGACC	A	4192.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.07;SOR=2.033;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr1	26608877	rs140364749	GCCGGGA	G	4406.73	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.51;SOR=2.054;set=HC	GT:AD:AF:DP	1/1:0,99:1.00:99
chr1	26609307	rs6598952	G	T	8914.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr1	26610891	rs4332350	A	C	5583.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr1	26612042	rs11247898	A	G	993.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	26612297	rs11579630	C	A	1791.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.74;SOR=1.318;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr1	26612460	rs11247900	G	A	5244.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr1	26620846	rs3832184	C	CA	7019.73	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr1	26623641	rs12129482	C	T	758.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	26644399	rs41285347	C	T	3310.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr1	26648381	rs17163868	C	T	2547.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr1	26648838	rs11247914	G	T	1966.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr1	26650550	rs11247915	C	A	4099.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr1	26654937	rs11589684	G	C	4492.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr1	26655208	rs11247916	C	T	3895.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr1	26655462	rs12057290	C	T	1582.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr1	26655507	rs11247917	C	A	856.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	26662774	rs7517559	C	T	3438.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.73;SOR=1.498;set=HC	GT:AD:AF:DP	1/1:0,124:1.00:124
chr1	26663362	rs10751735	C	T	6755.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:1,249:1.00:250
chr1	26664968	rs11247919	C	T	3008.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr1	26671522	.	GAAATGAGGCATCA	G	3571.73	.	AC=2;AF=1.00;AN=2;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.68;QD=44.10;SOR=0.768;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr1	26671538	.	AGCAC	A	3646.73	.	AC=2;AF=1.00;AN=2;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.67;QD=45.02;SOR=0.821;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr1	26671544	.	GGGGCCCTTCACGACCTCTTTCCAGGTGGGGAACA	G	3562.73	.	AC=2;AF=1.00;AN=2;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.68;QD=43.45;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr1	26671625	.	A	G	295	.	AC=1;AF=0.500;AN=2;BRF=0.54;FR=0.5000;HP=4;HapScore=1;MGOF=65;MMLQ=27;MQ=56.23;NF=7;NR=12;PP=295;QD=17.3563796077;SC=TCTGGGTGGGAGATGAGGCAG;SbPval=0.18;Source=Platypus;TC=72;TCF=38;TCR=34;TR=19;WE=26671633;WS=26671615;set=Platypus	GT:AD:AF:DP	0/1:53,19:0.26:72
chr1	26688181	rs11583897	G	C	2910.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr1	26694245	rs10794531	T	C	4821.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr1	26694260	rs10794532	T	C	4473.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:2,105:0.98:107
chr1	26698884	rs11247936	T	C	1880.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr1	26698938	rs6703878	A	G	5024.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:4,180:0.98:184
chr1	26699103	rs11584185	T	C	5644.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr1	26699157	rs11247937	T	C	2473.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr1	26700795	rs7520030	T	C	6633.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr1	26752992	rs4659441	T	C	1936.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr1	26856462	rs11800553	T	G	478.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	26878402	.	T	G	1360.77	.	AC=2;AF=1.00;AN=2;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	26879920	rs4970490	T	C	3893.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr1	26881806	rs897641	C	A	3642.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr1	26887150	rs34062688	A	G	2127.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr1	26887592	rs1064196	T	C	2032.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr1	26898142	rs188158	A	G	5146.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr1	26898956	rs282176	T	C	363.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	26900735	rs282179	C	G	4807.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr1	26901090	rs11113	C	T	1488.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr1	27320356	rs6689941	T	C	3455.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:2,133:0.99:135
chr1	27426796	rs4266911	T	C	2228.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr1	27427041	rs4418629	T	C	10216.77	.	AC=2;AF=1.00;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	1/1:0,373:1.00:373
chr1	27609980	rs6670124	T	G	5385.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr1	27679692	rs11247639	A	G	2314.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr1	27679797	rs3813795	A	G	7695.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr1	27680292	rs8533	A	G	4469.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr1	27682440	rs36035221	T	TG	3168.73	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr1	27682481	rs12569127	G	A	2937.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr1	27686063	rs7521552	G	C	2394.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr1	27687466	rs35659744	G	T	3796.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:1,146:0.99:147
chr1	27688799	rs113036458	C	T	1315.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	27689763	rs4525067	C	T	839.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	27690359	rs4307592	T	C	1271.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	27690644	rs12727507	A	G	6425.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr1	27690792	rs41291098	C	A	7995.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:1,305:1.00:306
chr1	27696011	rs10218730	C	T	1871.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr1	27700892	.	C	CG	2839.73	.	AC=2;AF=1.00;AN=2;DP=90;set=Intersection	GT:AD:AF:DP	1/1:1,87:0.99:88
chr1	27875824	rs4908364	C	T	4883.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr1	27944000	rs1292089	T	A	894.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	27995077	rs56015130	G	T	3215.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr1	28086955	rs10902671	C	A	2768.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr1	28199253	rs61787158	A	G	1480.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr1	28199369	rs61787159	C	T	70.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	28261593	rs3737809	T	C	715.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	28261658	rs3831926	T	TG	2520.73	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr1	28261902	rs3737807	C	A	723.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	28268573	rs10902678	C	T	487.94	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:2,19:0.90:21
chr1	28268706	rs4908341	G	A	1789.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr1	28268833	rs11386058	C	CG	5611.73	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr1	28268835	rs5018921	A	C	5620.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr1	28282206	rs3813804	C	T	1858.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr1	28282259	rs144208397	G	A	3554.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr1	28282819	rs4908381	T	C	2558.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr1	28290231	rs4373781	C	G	737.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	28301217	rs12406483	C	T	938.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	28339933	rs6683268	A	T	354.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	28369279	rs2476547	G	A	2303.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:1,82:0.99:83
chr1	28374815	rs7541031	C	T	593.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.74;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	28422847	rs2989472	C	T	8850.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr1	28527011	rs1049504	A	G	2094.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr1	28555426	rs567086	G	A	70.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	28555579	rs3753863	C	A	822.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	28559574	rs510803	C	G	6796.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr1	28559694	rs474597	A	G	1258.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	28562676	rs12154	A	G	2888.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr1	28563084	rs2078348	C	T	2114.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr1	28564252	rs8559	A	G	3181.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr1	28564279	rs9508	A	G	4145.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:1,162:0.99:163
chr1	28573293	rs67092542	G	GA	435.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.876;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.48;MQRankSum=0.589;QD=19.81;ReadPosRankSum=1.768;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:1,21:0.95:22
chr1	28800629	rs74455757	A	G	3829.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr1	28832713	.	C	CT	93.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.827;ClippingRankSum=0.000;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=0.000;QD=1.46;ReadPosRankSum=0.833;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:46,18:0.28:64
chr1	28929961	rs66806568	T	TA	69.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.811;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=0.981;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.59;ReadPosRankSum=1.563;SOR=0.873;set=HC	GT:AD:AF:DP	0/1:97,21:0.18:118
chr1	29016716	rs6678913	T	G	180.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.043;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=2.154;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.92;ReadPosRankSum=1.149;SOR=0.445;set=HC	GT:AD:AF:DP	0/1:37,25:0.40:62
chr1	29018316	.	TTTTATTTA	T,TTTTA	1087.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=67;set=Intersection	GT:AF:DP	1/2:0.21,0.79:28
chr1	29019724	rs4654365	G	A	1569.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:2,50:0.96:52
chr1	29037240	rs11415888	C	CT	217.74	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:4,14:0.78:18
chr1	29063559	rs6697540	A	C	1167.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr1	29070609	rs3835537	A	AG	366.74	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	29138975	rs1042114	G	T	3211.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr1	29189597	rs2234918	C	T	10279.77	.	AC=2;AF=1.00;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	1/1:2,379:0.99:381
chr1	29345009	rs5773229	C	CTT	772.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	29345027	rs2985334	T	G	397.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	29439016	rs4654390	T	A	2422.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:2,94:0.98:96
chr1	29475341	rs2230678	C	T	3025.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr1	29475394	rs2230677	C	G	4732.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr1	29475648	rs2230679	T	G	4189.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr1	29529699	rs1062924	T	C	5331.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr1	29542435	rs2640469	C	G	1391.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	29542637	rs1128400	A	G	3102.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr1	29557224	rs2640466	C	T	10592.77	.	AC=2;AF=1.00;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	1/1:0,407:1.00:407
chr1	29563059	rs75011501	C	T	683.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	29633491	rs3835409	T	TCAGCC	1704.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	29637136	rs2235939	T	C	1237.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	29637318	rs6671919	G	A	8833.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:0,341:1.00:341
chr1	29649874	rs10915252	T	C	2550.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr1	29652068	rs2076618	T	C	7183.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr1	29842261	rs10915168	A	T	502.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	31196255	rs45601237	G	A	1033.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:1,38:0.97:39
chr1	31210667	rs1188355	G	A	627.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	31347399	rs4949184	C	T	6947.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr1	31349647	rs2491132	C	T	2288.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr1	31351513	rs1891419	G	A	4351.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr1	31406286	rs58664754	TAC	T	273.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.39;QD=27.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	31415038	.	TTATATATATATATA	T,TTA	935.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=38.99;SOR=1.519;set=HC	GT:AD:AF:DP	1/2:0,8,16:0.33,0.67:24
chr1	31440921	rs4317854	G	A	989.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	31445932	rs2491135	C	G	902.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	31446099	rs11376427	T	TA	91.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.146;ClippingRankSum=-0.000;DB;DP=18;ExcessHet=3.0103;FS=3.041;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-0.000;QD=7.06;ReadPosRankSum=2.334;SOR=0.116;set=HC	GT:AD:AF:DP	0/1:4,9:0.69:13
chr1	31478638	.	AAGAGAGAGAGAG	A,AAG	2787.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=40.40;SOR=1.678;set=HC	GT:AD:AF:DP	1/2:0,11,58:0.16,0.84:69
chr1	31654940	rs2297959	C	T	817.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	31732390	rs6425725	G	A	345.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.34;SOR=5.421;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	31732602	rs59591825	CA	C	618.94	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.211;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.32;ReadPosRankSum=-1.335;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:10,50:0.83:60
chr1	31733721	rs140443791	A	AAAG	941.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.76;QD=40.94;SOR=1.426;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	31733782	rs10914338	T	A	1310.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	31733926	rs12121460	A	G	1082.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	31740668	rs3753374	C	T	4383.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr1	31744168	rs3737755	G	A	266.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	31744505	rs113021667	A	AT	623.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.070;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=3.910;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=18.90;ReadPosRankSum=-1.571;SOR=2.546;set=HC	GT:AD:AF:DP	1/1:2,31:0.94:33
chr1	31754511	rs4949374	G	C	1271.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr1	31761989	rs1532859	G	A	1467.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr1	31762374	rs1532858	C	T	642.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	31764693	rs12135540	G	A	759.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	31764713	rs142762586	C	CAAG	1267.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	31764930	rs10733007	T	C	1457.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr1	31792141	rs4949384	A	G	855.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	31838551	rs5773353	T	TA	47.50	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.792;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=6.79;ReadPosRankSum=-0.180;SOR=0.527;set=HC	GT:AD:AF:DP	1/1:1,6:0.86:7
chr1	31838909	.	ATGTGTGTGTG	A	577	.	AC=2;AF=1.00;AN=2;BRF=0.17;FR=0.9339;HP=2;HapScore=1;MGOF=15;MMLQ=23;MQ=62.76;NF=2;NR=12;PP=577;QD=41.4285714286;SC=ATATGTATGTATGTGTGTGTG;SbPval=0.47;Source=Platypus;TC=18;TCF=2;TCR=16;TR=14;WE=31838928;WS=31838899;set=Platypus	GT:AD:AF:DP	1/1:4,14:0.78:18
chr1	31840426	rs2271072	C	G	1504.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	31886107	rs113775292	G	A	2887.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:1,123:0.99:124
chr1	31897493	rs1320585	A	G	1782.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr1	31898132	rs4949400	T	C	8158.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:2,309:0.99:311
chr1	31898162	rs4949401	C	T	10796.77	.	AC=2;AF=1.00;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	1/1:2,408:1.00:410
chr1	31898234	rs4949402	T	C	9814.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	1/1:1,357:1.00:358
chr1	31898279	rs4949403	A	C	6668.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr1	31898536	rs2275435	C	T	583.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	31899684	rs10454445	A	T	1679.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:2,63:0.97:65
chr1	31899704	rs10454446	C	T	1748.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr1	31905889	rs3050461	A	ACAG	8381.73	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:19,204:0.91:223
chr1	31906882	rs11587589	A	G	2505.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr1	31907102	rs7417775	A	G	1762.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr1	31971701	rs201612393	GC	G	2595.73	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr1	31971707	rs35567548	G	A	2604.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr1	32044589	rs12736080	T	C	117.81	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.31;QD=29.45;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	32044595	rs12750558	C	G	120.80	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.36;QD=30.20;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	32044601	rs28555101	G	T	120.80	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.63;QD=30.20;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	32044607	rs28402919	G	C	124.79	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.08;QD=31.20;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	32044609	rs28520749	G	A	124.79	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.27;QD=31.20;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	32044641	rs12753402	G	A	921.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	32119347	rs376725697	AAC	A	99.73	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:40,10:0.20:50
chr1	32127911	rs2271927	C	T	5965.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr1	32127953	rs2271928	G	A	5941.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr1	32128283	rs1568396	C	G	914.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.394;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=11.027;MLEAC=2;MLEAF=1.000;MQ=60.28;MQRankSum=-5.918;QD=24.07;ReadPosRankSum=1.680;SOR=4.972;set=HC	GT:AD:AF:DP	1/1:1,37:0.97:38
chr1	32133737	rs2292988	C	T	2163.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr1	32136168	rs2292990	G	T	3744.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:1,146:0.99:147
chr1	32145009	rs4949461	C	T	1900.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr1	32148571	rs10737358	A	G	3319.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr1	32155284	rs2297682	T	C	4865.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.197;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=3.303;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.44;ReadPosRankSum=-0.525;SOR=0.454;set=HC	GT:AD:AF:DP	1/1:1,183:0.99:184
chr1	32155911	rs6425780	G	T	1012.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	32155929	rs2297681	G	A	1218.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr1	32156722	rs10914467	G	A	4681.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr1	32156869	rs10798884	A	T	13990.77	.	AC=2;AF=1.00;AN=2;DB;DP=523;set=Intersection	GT:AD:AF:DP	1/1:0,515:1.00:515
chr1	32157531	rs2297676	T	C	6396.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:2,246:0.99:248
chr1	32158374	rs3818788	T	C	6155.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr1	32159588	rs2275097	A	C	2124.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr1	32160918	rs6656079	A	G	6069.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr1	32163950	rs2297674	G	C	1656.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	32164206	rs2228550	T	G	2360.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr1	32165495	rs2228552	G	T	3462.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr1	32167526	rs1815465	G	C	1487.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	32193647	rs1127100	T	C	3568.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr1	32201168	.	G	GC	11205.73	.	AC=2;AF=1.00;AN=2;DP=433;set=Intersection	GT:AD:AF:DP	1/1:5,400:0.99:405
chr1	32266026	rs552124	A	G	5634.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:1,220:1.00:221
chr1	32279629	rs6669563	G	A	3205.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr1	32280610	rs6664445	T	C	7383.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:2,270:0.99:272
chr1	32692168	rs373073695	AT	A	67.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.102;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=2.048;MLEAC=1;MLEAF=0.500;MQ=61.05;MQRankSum=2.416;QD=2.71;ReadPosRankSum=-2.846;SOR=0.260;set=HC	GT:AD:AF:DP	0/1:15,10:0.40:25
chr1	32860161	rs547329	T	C	5956.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr1	33065947	rs704886	G	C	9397.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:0,343:1.00:343
chr1	33087437	rs3753603	G	A	103.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	33099637	rs704878	A	G	1583.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr1	33099798	rs704877	A	G	720.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	33117071	rs583114	T	G	1493.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr1	33117092	rs12407673	C	T	1168.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	33117137	rs12407680	C	G	722.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	33127730	rs1085416	T	C	441.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	33133968	rs2762904	T	C	5196.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr1	33138360	.	AT	A	2011	.	AC=2;AF=1.00;AN=2;BRF=0.41;FR=1.0000;HP=3;HapScore=1;MGOF=2;MMLQ=28;MQ=60.0;NF=7;NR=42;PP=2011;QD=42.0414469361;SC=CTCTATCTGCATTTCACCTCT;SbPval=0.55;Source=Platypus;TC=49;TCF=7;TCR=42;TR=49;WE=33138374;WS=33138350;set=Platypus	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	33138361	.	TTTC	T	4200.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.212;ClippingRankSum=0.000;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=40.01;ReadPosRankSum=-1.733;SOR=1.190;set=HC	GT:AD:AF:DP	0/1:4,101:0.96:105
chr1	33138364	.	C	CAA	4200.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.492;ClippingRankSum=0.000;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=40.01;ReadPosRankSum=-1.599;SOR=1.190;set=HC	GT:AD:AF:DP	0/1:4,101:0.96:105
chr1	33138366	rs367873300	C	A	4209.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.564;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=1.955;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=40.48;ReadPosRankSum=-1.480;SOR=1.284;set=HC	GT:AD:AF:DP	0/1:4,100:0.96:104
chr1	33149698	rs34250196	AAG	A	4723.73	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr1	33160644	rs3795424	T	G	2391.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr1	33161264	rs74519835	C	T	16136.77	.	AC=2;AF=1.00;AN=2;DB;DP=614;set=Intersection	GT:AD:AF:DP	1/1:6,594:0.99:600
chr1	33161612	rs3806248	T	G	5122.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:2,187:0.99:189
chr1	33231380	rs6694085	T	G	4365.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.260;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=3.280;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.30;ReadPosRankSum=-0.534;SOR=0.440;set=HC	GT:AD:AF:DP	1/1:1,165:0.99:166
chr1	33231403	rs6702519	G	T	4400.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:1,165:0.99:166
chr1	33233323	rs360523	A	G	3375.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr1	33234128	rs3737992	G	A	905.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.13;SOR=1.508;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	33234136	rs360522	T	C	958.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.69;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	33252099	rs149745059	TCACATGCATGACTATTCCTAGCC	T	5083.73	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:2,174:0.99:176
chr1	33256884	rs1765223	C	A	1367.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr1	33276424	rs4951787	G	A	3471.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr1	33293748	rs10753266	T	C	1327.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	33299816	rs4951773	A	T	238.78	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	33318561	rs702836	T	C	1191.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	33318634	rs785274	G	A	2680.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr1	33330432	rs1284368	A	G	1920.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr1	33361552	rs139394643	C	T	3667.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr1	33409551	rs194644	C	T	2158.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr1	33409693	rs194645	G	A	3924.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr1	33430102	rs113840389	T	G	58.28	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	33476353	rs66599471	C	T	65.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.061;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.28;MQRankSum=-5.965;QD=0.76;ReadPosRankSum=1.068;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:73,13:0.15:86
chr1	33476385	rs76881767	C	G	93.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.841;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.60;MQRankSum=-6.303;QD=0.79;ReadPosRankSum=0.698;SOR=0.578;set=HC	GT:AD:AF:DP	0/1:107,11:0.09:118
chr1	33476387	rs201842558	C	T	69.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.746;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.61;MQRankSum=-6.390;QD=0.58;ReadPosRankSum=0.467;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:110,11:0.09:121
chr1	33485789	.	A	AACAC,AACACAC	1705.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.595;ClippingRankSum=0.000;DP=122;ExcessHet=3.0103;FS=3.373;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=37.08;ReadPosRankSum=-1.951;SOR=2.191;set=HC	GT:AD:AF:DP	1/2:2,11,33:0.24,0.72:46
chr1	33497070	rs1012884	G	A	639.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	33560338	rs804428	A	G	3205.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr1	33641932	rs604941	A	G	5346.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr1	33642152	rs643402	C	T	1232.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	33646950	rs622407	A	G	3649.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr1	33742228	rs4475712	T	C	296.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	33746163	rs10914676	T	C	691.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	33760743	rs4641276	T	C	10407.77	.	AC=2;AF=1.00;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	1/1:0,374:1.00:374
chr1	33777524	rs6679416	T	C	3916.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr1	33778591	rs6664593	T	C	435.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	33794416	rs72658237	T	C	1766.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	33796891	rs41265891	C	A	592.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	33798126	rs72658242	T	G	1652.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:2,61:0.97:63
chr1	33820033	rs16835408	C	T	2255.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr1	33832865	rs6425816	A	G	4685.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr1	33836796	rs7545416	C	G	1906.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr1	33840858	rs34710284	G	A	1351.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	33957152	rs4403594	T	G	5596.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr1	33960062	rs9943259	A	G	7855.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:1,300:1.00:301
chr1	33961147	rs3795420	T	G	1282.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	33985353	rs2641959	C	G	6838.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr1	34024928	rs16835591	T	C	3280.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr1	34025030	rs16835593	A	G	3583.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr1	34043169	rs11291100	TC	T	1458.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	34052605	rs7526990	A	G	506.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	34070826	rs12733436	G	A	716.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	34071434	rs1874044	C	T	456.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	34071525	rs1874045	C	T	1479.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr1	34158472	rs12757315	C	T	5715.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.36;SOR=1.826;set=HC	GT:AD:AF:DP	1/1:0,126:1.00:126
chr1	34158482	rs12757320	C	T	6112.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.03;SOR=1.441;set=HC	GT:AD:AF:DP	1/1:0,149:1.00:149
chr1	34189917	rs519370	C	T	3357.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;MQ=60.17;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr1	34189957	rs11346874	AG	A	2257.73	.	AC=2;AF=1.00;AN=2;DB;DP=76;MQ=60.43;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr1	34329897	rs911218	T	C	5500.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr1	34330067	rs10379	A	C	9603.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:1,339:1.00:340
chr1	34631200	rs150837376	AAC	A	84.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.920;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=2.778;MLEAC=1;MLEAF=0.500;MQ=60.38;MQRankSum=-0.582;QD=1.09;ReadPosRankSum=1.639;SOR=1.135;set=HC	GT:AD:AF:DP	0/1:66,12:0.15:78
chr1	34663208	rs1382602	C	G	6250.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:3,225:0.99:228
chr1	34673586	rs58789216	A	G	2216.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr1	34673701	rs41266413	A	C	6839.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:1,249:1.00:250
chr1	34684463	rs705207	G	A	1191.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	35183838	rs683589	A	C	1836.73	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr1	35184033	rs693582	C	T	2830.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr1	35184084	rs693852	C	T	1300.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	35223345	rs3738345	G	A	5222.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:1,180:0.99:181
chr1	35223881	rs1061349	G	A	797.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	35259961	rs1764390	A	G	11728.77	.	AC=2;AF=1.00;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	1/1:0,422:1.00:422
chr1	35260929	rs3543	G	A	1459.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	35321242	rs14103	A	C	6401.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:2,234:0.99:236
chr1	35333126	rs12727066	T	C	5486.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr1	35350573	rs34565935	CT	C	5453.73	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:2,157:0.99:159
chr1	35485261	rs377267965	GTC	G	43.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.129;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.99;ReadPosRankSum=0.294;SOR=0.497;set=HC	GT:AD:AF:DP	0/1:38,6:0.14:44
chr1	35561510	rs2101973	G	A	2169.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr1	35562965	rs2971408	G	A	9359.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	1/1:0,355:1.00:355
chr1	35563206	rs6658571	C	G	3075.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr1	35576145	rs2935955	C	T	496.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	35925861	rs2819002	C	A	2673.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:2,112:0.98:114
chr1	36203715	.	ATAT	A	1534.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.920;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=5.798;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=32.65;ReadPosRankSum=1.739;SOR=2.225;set=HC	GT:AD:AF:DP	1/1:4,43:0.91:47
chr1	36203720	rs201555109	T	A	395.10	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.499;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.64;ReadPosRankSum=-0.745;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:10,31:0.76:41
chr1	36203722	rs199569493	T	A	1650.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.52;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	36203724	.	T	A	728.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.998;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;FS=5.082;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.13;ReadPosRankSum=0.359;SOR=1.739;set=HC	GT:AD:AF:DP	1/1:1,28:0.97:29
chr1	36205166	rs577483	A	G	2654.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr1	36209228	.	A	AT	52.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.079;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=3.537;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.46;ReadPosRankSum=1.724;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:27,9:0.25:36
chr1	36213712	rs516992	G	T	2231.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr1	36216835	rs535638	C	T	1003.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	36282399	.	CAA	C	205.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.210;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.81;ReadPosRankSum=2.258;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:39,15:0.28:54
chr1	36282417	rs2791960	A	G	2072.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.820;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=21.37;ReadPosRankSum=0.965;SOR=0.724;set=HC	GT:AD:AF:DP	1/1:1,96:0.99:97
chr1	36316418	rs11403763	C	CA	1019.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.64;QD=22.66;SOR=1.414;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	36316571	rs4652895	A	C	5227.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr1	36448391	.	G	GA	109.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.048;ClippingRankSum=0.000;DP=79;ExcessHet=3.0103;FS=4.677;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.59;ReadPosRankSum=1.288;SOR=0.242;set=HC	GT:AD:AF:DP	0/1:54,15:0.22:69
chr1	36479764	.	AT	A	48.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.840;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=2.702;MLEAC=1;MLEAF=0.500;MQ=60.45;MQRankSum=1.315;QD=2.87;ReadPosRankSum=0.151;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:10,7:0.41:17
chr1	36520795	rs115694107	C	T	716.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	36553673	rs399393	A	G	4060.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr1	36563158	rs3738360	C	A	1025.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	36565584	rs274753	C	G	1816.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr1	36565617	rs274754	G	A	2428.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:2,93:0.98:95
chr1	36602943	rs2231318	C	T	1071.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	36641729	rs2296263	C	T	431.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	36642420	rs475591	T	C	1635.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr1	36752433	rs6425977	C	T	6211.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr1	36762396	rs1566589	C	T	1644.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr1	36767400	rs882799	C	T	1721.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	36773405	rs35343437	T	G	11002.77	.	AC=2;AF=1.00;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	1/1:3,404:0.99:407
chr1	36773819	rs11263871	C	G	2697.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.71;SOR=1.190;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chr1	36785270	rs2282431	C	T	6662.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr1	36788356	rs7536394	A	G	1278.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	36881871	.	CT	C	47.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.963;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=5.898;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=1.373;QD=2.27;ReadPosRankSum=1.088;SOR=2.461;set=HC	GT:AD:AF:DP	0/1:13,8:0.38:21
chr1	36884530	.	G	GA	100.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.806;ClippingRankSum=0.000;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.696;QD=1.53;ReadPosRankSum=0.176;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:50,16:0.24:66
chr1	36888302	.	CT	C	224.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.579;ClippingRankSum=0.000;DP=135;ExcessHet=3.0103;FS=4.152;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.77;ReadPosRankSum=0.271;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:91,36:0.28:127
chr1	36921371	rs1538634	G	T	3131.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:1,117:0.99:118
chr1	36926445	rs3738839	C	T	3406.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr1	36927733	rs7065	G	A	2009.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr1	36945307	rs3832027	AG	A	640.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	37626981	rs215756	T	C	376.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	37959450	rs215210	T	C	5559.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr1	37959470	rs215211	C	G	4781.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr1	37959499	rs215212	G	C	3255.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:2,115:0.98:117
chr1	37961317	rs215213	A	C	1083.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.151;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=29.29;ReadPosRankSum=0.094;SOR=0.323;set=HC	GT:AD:AF:DP	1/1:1,36:0.97:37
chr1	37967707	.	ATTGACAGAGAAGATACATG	A	1591	.	AC=2;AF=1.00;AN=2;BRF=0.15;FR=1.0000;HP=2;HapScore=1;MGOF=8;MMLQ=23;MQ=60.0;NF=0;NR=5;PP=1591;QD=332.503974492;SC=CTATCCTCTAATTGACAGAGA;SbPval=1.0;Source=Platypus;TC=13;TCF=0;TCR=13;TR=5;WE=37967733;WS=37967697;set=Platypus	GT:AD:AF:DP	1/1:8,5:0.38:13
chr1	37975279	rs215214	C	T	1353.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	37975312	rs2036637	T	C	1097.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	37978897	rs61779866	G	A	1901.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr1	38006359	rs2174769	A	G	3083.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr1	38023316	rs11749	C	T	10688.77	.	AC=2;AF=1.00;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	1/1:6,407:0.99:413
chr1	38046920	rs2360010	G	T	3451.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr1	38049552	rs6426024	C	G	6705.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr1	38052867	rs11420067	C	CA	362.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.930;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=4.143;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.71;ReadPosRankSum=2.502;SOR=0.375;set=HC	GT:AD:AF:DP	0/1:93,41:0.31:134
chr1	38061572	rs6697632	G	T	1141.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	38078630	rs55852308	A	T	1339.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	38082122	rs12039431	GC	AT	961.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	38148910	rs41312637	C	A	6890.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr1	38188841	rs12121777	G	A	4848.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:1,174:0.99:175
chr1	38192604	rs6699887	G	A	894.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	38293992	rs9329568	C	T	495.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	38301478	.	CT	C	63.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.575;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=1.560;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.30;ReadPosRankSum=-0.205;SOR=1.123;set=HC	GT:AD:AF:DP	0/1:35,14:0.29:49
chr1	38332074	rs149926262	TCTCTCACA	T	658.73	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:43,35:0.45:78
chr1	38397341	rs34655914	G	A	7281.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr1	38397369	rs35267671	C	T	9446.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:0,342:1.00:342
chr1	38411350	rs11485595	C	T	5190.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr1	38411445	rs871524	G	A	9089.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:0,339:1.00:339
chr1	38423853	rs9293	G	C	1380.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	38425629	rs34993722	CAA	C	212.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.989;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.67;ReadPosRankSum=-0.850;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:11,11:0.50:22
chr1	38425724	rs17531342	T	C	2499.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr1	38425895	rs28675056	T	C	2214.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:2,86:0.98:88
chr1	38442547	rs10890216	G	A	6979.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:2,265:0.99:267
chr1	38447615	rs7533079	G	T	499.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	38450367	rs6680796	A	G	8968.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	1/1:0,334:1.00:334
chr1	38455389	rs3935867	C	T	1998.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr1	38462898	rs4274021	T	A	3548.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.76;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr1	38462905	rs12724533	C	G	3647.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.93;SOR=1.030;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr1	38464639	rs4570384	C	G	9847.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	1/1:0,354:1.00:354
chr1	38478702	rs149609377	C	G	1101.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	38483296	rs373891204	A	ATT	844.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.277;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=3.081;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.14;ReadPosRankSum=1.869;SOR=0.133;set=HC	GT:AD:AF:DP	1/1:2,33:0.94:35
chr1	38484665	rs200532400	G	GT	90.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.045;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=1.659;QD=1.85;ReadPosRankSum=-0.664;SOR=0.866;set=HC	GT:AD:AF:DP	0/1:35,14:0.29:49
chr1	39325014	rs150497711	G	A	996.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	39325063	rs1925678	T	C	2067.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:1,76:0.99:77
chr1	39339449	rs12127091	C	T	2207.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr1	39340282	rs880303	C	T	7244.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:2,276:0.99:278
chr1	39352271	rs2147914	G	T	8729.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:2,333:0.99:335
chr1	39352492	rs3790441	G	A	1296.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	39361615	rs9438984	G	A	2940.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr1	39385086	rs7522863	A	C	1547.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr1	39457016	rs11547138	C	T	227.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	39457293	rs111311750	T	C	370.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	39466626	rs11205525	A	G	1525.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:1,59:0.98:60
chr1	39466786	rs10888613	C	G	4080.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:1,155:0.99:156
chr1	39494666	rs35464164	C	CT	551.06	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.100;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=0.000;QD=10.60;ReadPosRankSum=0.545;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:13,39:0.75:52
chr1	39494687	rs3768323	G	A	1863.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	39549962	.	A	G	10981.77	.	AC=2;AF=1.00;AN=2;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr1	39549983	rs3736890	G	A	9635.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr1	39550210	rs260972	C	T	514.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	39568765	rs2282232	T	C	2001.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr1	39571211	rs13374459	T	C	573.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	39717566	rs2490948	T	C	1493.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr1	39719812	rs66880209	G	A	1426.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:3,54:0.95:57
chr1	39723719	rs371747581	G	A	7844.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr1	39751172	.	CT	C	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.655;ClippingRankSum=0.000;DP=23;ExcessHet=3.0103;FS=1.922;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.59;ReadPosRankSum=1.106;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:11,9:0.45:20
chr1	39757799	rs16826036	G	C	1241.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	39758634	rs16826038	G	A	6795.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:2,259:0.99:261
chr1	39763365	rs148207245	G	T	7223.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:3,269:0.99:272
chr1	39766041	rs41270803	A	G	2646.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr1	39797055	rs16826069	A	G	3585.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr1	39801815	rs41270807	A	C	3406.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr1	39806610	rs3116396	C	T	4008.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr1	39812620	rs2490944	G	T	1998.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr1	39812822	rs2761764	C	A	3410.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr1	39815143	rs16826093	T	A	5787.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr1	39815344	rs41270811	G	A	1663.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr1	39823032	rs147223845	A	AT	4004.73	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:16,191:0.92:207
chr1	39824718	rs2256614	C	G	976.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:1,31:0.97:32
chr1	39826343	rs149306191	T	TATA	483.73	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:1,12:0.92:13
chr1	39826391	rs10632223	A	ATTAT	1292.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.09;SOR=1.143;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	39835817	rs2296172	A	G	2829.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr1	39843958	rs663449	G	A	627.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	39879366	rs604316	T	C	4853.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.484;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=3.259;MLEAC=2;MLEAF=1.000;MQ=58.77;MQRankSum=-0.303;QD=26.97;ReadPosRankSum=1.713;SOR=0.422;set=HC	GT:AD:AF:DP	1/1:1,179:0.99:180
chr1	39889677	rs663892	G	A	1745.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr1	39893093	rs625384	C	T	3500.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr1	39894839	rs645061	A	G	819.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	39895460	rs683135	G	A	721.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	39908506	rs587404	G	A	1278.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:2,50:0.96:52
chr1	39908726	rs588326	A	G	171.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	39913074	.	CTG	C	74.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.089;ClippingRankSum=0.000;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.82;ReadPosRankSum=1.374;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:80,11:0.12:91
chr1	39913351	rs2296173	A	G	6282.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr1	39914363	rs668556	G	C	5364.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr1	39927507	rs783820	G	A	2266.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:1,81:0.99:82
chr1	39945749	.	T	TAGCCTCTGAAAGACTCCAGTGAGGAGAAGAAATAAAAATG	139.75	.	AC=1;AF=0.500;AN=2;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=46.58;SOR=2.833;set=HC	GT:AD:AF:DP	0/1:0,3:1.00:3
chr1	39957913	rs4660269	A	G	973.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	39976804	rs372200794	G	C	444.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.59;QD=26.16;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	39987922	rs61779338	C	A	323.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.73;QD=29.43;SOR=3.442;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	39988219	.	C	T	64.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.451;ClippingRankSum=0.000;DP=134;ExcessHet=3.0103;FS=2.644;MLEAC=1;MLEAF=0.500;MQ=57.27;MQRankSum=-6.077;QD=0.48;ReadPosRankSum=2.281;SOR=0.355;set=HC	GT:AD:AF:DP	0/1:122,12:0.09:134
chr1	39988238	.	T	TG	68.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.740;ClippingRankSum=0.000;DP=111;ExcessHet=3.0103;FS=5.091;MLEAC=1;MLEAF=0.500;MQ=57.02;MQRankSum=-5.429;QD=0.62;ReadPosRankSum=0.453;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:100,10:0.09:110
chr1	39991474	rs11583829	AG	CA	13213.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;JOINED;set=Intersection	GT:AD:AF:DP	1/1:2,299:0.99:301
chr1	39991588	rs3738676	G	T	2638.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr1	40028180	rs4660293	A	G	3363.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr1	40035686	rs17513135	C	T	5842.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:2,213:0.99:215
chr1	40036847	rs2293476	G	C	989.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	40037354	rs41264487	C	G	1326.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	40041371	rs79094524	G	GA	2430.73	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:2,79:0.98:81
chr1	40041699	rs201925786	T	TCGGAGC	1102.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	40092089	rs2695320	T	C	809.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	40096053	rs1148945	T	C	822.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	40098328	rs784625	T	C	3240.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr1	40137754	rs2871601	G	A	3044.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr1	40149515	rs784633	A	G	1335.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	40149642	rs784634	G	T	6125.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr1	40149870	rs113763288	C	G	1831.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.72;QD=41.63;SOR=3.467;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	40149875	rs113459798	C	T	1731.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.81;QD=44.40;SOR=3.556;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	40149926	.	C	CCCCGGGTGCCTCGCCTCCTCCCAT	814	.	AC=2;AF=1.00;AN=2;BRF=0.45;FR=1.0000;HP=3;HapScore=1;MGOF=59;MMLQ=24;MQ=63.1;NF=2;NR=4;PP=814;QD=141.333333333;SC=CCTCCTCCCACCCCGGGTGCC;SbPval=0.38;Source=Platypus;TC=14;TCF=3;TCR=11;TR=6;WE=40149934;WS=40149916;set=Platypus	GT:AD:AF:DP	1/1:8,6:0.43:14
chr1	40150156	rs9662128	G	A	4138.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr1	40150370	rs2746058	C	T	440.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	40204424	rs7548120	A	T	342.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	40207169	rs497333	T	G	3118.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr1	40214525	rs7520588	T	A	421.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	40219065	rs1046988	C	T	4294.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:2,160:0.99:162
chr1	40229297	rs71060328	A	AC	1341.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.48;QD=36.26;SOR=2.242;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	40229319	rs493473	G	A	1582.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.02;QD=28.26;SOR=1.919;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr1	40229368	rs2463260	A	G	2549.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:2,85:0.98:87
chr1	40230531	rs115705483	C	T	1042.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.960;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=2.520;MLEAC=1;MLEAF=0.500;MQ=47.05;MQRankSum=-1.768;QD=16.82;ReadPosRankSum=1.230;SOR=1.259;set=HC	GT:AD:AF:DP	0/1:17,45:0.73:62
chr1	40310157	rs369626198	G	A	2153.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:3,81:0.96:84
chr1	40313849	rs1333742	T	C	2558.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr1	40319587	rs2294814	A	C	4589.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr1	40349131	rs3845570	G	A	3288.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr1	40363054	rs3134614	G	C	2317.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr1	40367592	rs804719	A	G	2340.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr1	40421617	rs140696582	TG	T	790.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:1,25:0.96:26
chr1	40526003	rs3122419	T	C	1224.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	40528445	.	T	TTGTGTGTGTGTG	96.37	.	AC=2;AF=1.00;AN=2;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.12;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	40533266	rs11207440	T	G	3269.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr1	40533287	rs6665926	T	G	3456.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr1	40533315	rs6665933	T	G	3359.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.80;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr1	40533320	rs6665936	T	G	3334.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.46;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr1	40533326	rs6665937	T	G	3289.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.07;SOR=3.551;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr1	40533347	rs6665944	T	G	3017.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr1	40536074	rs58190778	C	CT	6837.73	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr1	40554958	.	C	CAAAAAAAAAAAAAAA	283.75	.	AC=2;AF=1.00;AN=2;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=141.88;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr1	40556922	rs3122439	T	C	3262.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr1	40556942	rs56654546	A	T	3038.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:5,136:0.96:141
chr1	40558256	rs4481840	C	G	1607.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr1	40705427	rs34141181	C	G	7827.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:2,275:0.99:277
chr1	40737516	rs6677717	T	G	1416.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr1	40840268	rs72258841	CGT	C	250.73	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:36,16:0.31:52
chr1	40840296	rs4561032	T	A	1322.73	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:12,61:0.84:73
chr1	40879808	rs209605	G	T	6026.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr1	40881041	rs209606	C	G	4464.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr1	40955375	rs10157181	G	C	702.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	40980559	rs1134586	G	A	5113.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:2,179:0.99:181
chr1	40980731	rs11208299	G	T	3320.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr1	40998811	rs6659361	A	G	1267.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	41007403	rs41268073	T	A	1788.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr1	41101572	rs2253835	A	G	1582.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	41107360	rs491619	T	C	12705.77	.	AC=2;AF=1.00;AN=2;DB;DP=487;set=Intersection	GT:AD:AF:DP	1/1:4,482:0.99:486
chr1	41284366	rs2361660	G	C	2263.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr1	41284406	rs2361659	A	G	1360.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	41284473	rs116688226	C	T	870.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.61;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	41285087	rs4660468	T	C	12157.77	.	AC=2;AF=1.00;AN=2;DB;DP=468;set=Intersection	GT:AD:AF:DP	1/1:0,462:1.00:462
chr1	41296828	rs34287852	T	G	8204.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:2,294:0.99:296
chr1	41298652	rs913378	T	C	9090.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:0,335:1.00:335
chr1	41300690	rs55964611	G	A	7274.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr1	41453286	rs5773721	GT	G	3256.73	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr1	41456808	rs111518708	C	CT	159.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.304;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=2.220;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.746;QD=1.82;ReadPosRankSum=0.697;SOR=1.058;set=HC	GT:AD:AF:DP	0/1:67,21:0.24:88
chr1	41540853	rs2011981	A	T	5260.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.56;SOR=1.081;set=HC	GT:AD:AF:DP	1/1:0,113:1.00:113
chr1	41540861	rs2011982	T	C	5512.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.76;SOR=1.078;set=HC	GT:AD:AF:DP	1/1:0,132:1.00:132
chr1	41618442	rs213768	A	T	1592.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	41848060	rs12092825	C	T	2886.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr1	41848296	rs4359027	G	A	14090.77	.	AC=2;AF=1.00;AN=2;DB;DP=536;set=Intersection	GT:AD:AF:DP	1/1:0,531:1.00:531
chr1	41949595	rs2759256	G	A	3817.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr1	41949628	rs2759257	A	C	6527.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr1	41950312	rs2984691	T	C	4784.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr1	41976017	rs678110	C	T	3276.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr1	41976217	rs72669005	G	A	1087.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:76,53:0.41:129
chr1	41976328	rs9439043	T	C	2433.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr1	41978566	rs2991344	T	G	3247.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr1	41978825	rs2483689	C	G	7750.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:1,273:1.00:274
chr1	41979156	rs615177	A	G	4674.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:3,166:0.98:169
chr1	41983912	rs2810547	C	A	2992.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.36;SOR=2.224;set=HC	GT:AD:AF:DP	1/1:0,118:1.00:118
chr1	42046613	rs12132697	G	T	2027.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:91,91:0.50:182
chr1	42046812	rs2810565	C	T	4601.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr1	42048745	rs2810566	T	C	9870.77	.	AC=2;AF=1.00;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	1/1:0,365:1.00:365
chr1	42049032	rs2984694	G	A	5716.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr1	42049140	rs2475842	C	G	11708.77	.	AC=2;AF=1.00;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	1/1:0,400:1.00:400
chr1	42050366	rs2146315	C	T	3238.77	.	AC=1;AF=0.500;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	0/1:181,155:0.46:336
chr1	42619139	rs1047047	A	G	2181.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:81,105:0.56:186
chr1	42629040	rs2232224	A	G	2882.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr1	42630364	rs2071499	G	A	1226.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:90,67:0.43:157
chr1	42647536	rs150698477	TCA	T	110.73	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:31,8:0.21:39
chr1	42647568	rs150006846	ACT	A	123.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.694;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.69;ReadPosRankSum=2.293;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:62,11:0.15:73
chr1	42693597	rs343376	A	G	12022.77	.	AC=2;AF=1.00;AN=2;DB;DP=465;set=Intersection	GT:AD:AF:DP	1/1:2,459:1.00:461
chr1	42776699	rs200511460	G	GA	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.739;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=2.082;QD=0.40;ReadPosRankSum=0.139;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:87,18:0.17:105
chr1	42846786	rs11210626	G	C	5194.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr1	42870338	rs1105670	C	T	609.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:22,26:0.54:48
chr1	42880516	rs1055055	T	C	6616.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr1	42898843	rs1034268	A	G	3330.77	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:173,161:0.48:334
chr1	42901082	rs3748845	A	C	2209.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:120,106:0.47:226
chr1	42901173	rs4660634	C	T	517.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:29,22:0.43:51
chr1	42915753	rs11210647	T	C	4431.77	.	AC=1;AF=0.500;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	0/1:240,216:0.47:456
chr1	42948562	rs202122677	GA	G	839.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.375;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=9.489;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=2.024;QD=6.22;ReadPosRankSum=-0.011;SOR=0.210;set=HC	GT:AD:AF:DP	0/1:70,65:0.48:135
chr1	42948585	rs6656344	C	A	1530.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:55,61:0.53:116
chr1	42956001	rs72659920	G	A	322.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:19,16:0.46:35
chr1	42956034	rs72659921	A	G	250.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:13,10:0.43:23
chr1	42962800	rs3748841	A	T	2882.77	.	AC=1;AF=0.500;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	0/1:223,149:0.40:372
chr1	42986956	rs72659942	T	C	505.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:48,27:0.36:75
chr1	43002199	rs372826618	AAG	A	640.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.124;ClippingRankSum=0.000;DB;DP=500;ExcessHet=3.0103;FS=0.789;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.39;ReadPosRankSum=0.670;SOR=0.815;set=HC	GT:AD:AF:DP	0/1:396,65:0.14:461
chr1	43002347	rs72659956	A	G	1184.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:74,51:0.41:125
chr1	43002358	rs72659958	A	G	952.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:60,42:0.41:102
chr1	43002744	rs4660643	G	A	1270.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:65,59:0.48:124
chr1	43011389	rs6661835	A	G	82.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:19,4:0.17:23
chr1	43011396	rs142311566	TCG	T	70.73	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:19,4:0.17:23
chr1	43021810	rs12038786	C	T	1504.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:63,69:0.52:132
chr1	43030135	rs114498677	C	T	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.922;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.06;MQRankSum=-3.570;QD=0.86;ReadPosRankSum=1.112;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:32,5:0.14:37
chr1	43030158	rs67724541	G	A	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.903;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.46;MQRankSum=-4.731;QD=0.84;ReadPosRankSum=-0.177;SOR=0.476;set=HC	GT:AD:AF:DP	0/1:37,7:0.16:44
chr1	43030190	.	A	ACCTCAGGTGATCCACCCACCTCGG	562.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.661;ClippingRankSum=0.000;DP=64;ExcessHet=3.0103;FS=10.365;MLEAC=1;MLEAF=0.500;MQ=58.90;MQRankSum=-4.957;QD=9.08;ReadPosRankSum=-1.309;SOR=2.488;set=HC	GT:AD:AF:DP	0/1:51,11:0.18:62
chr1	43055243	rs10789417	C	G	558.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:40,24:0.38:64
chr1	43076555	rs201279077	CTT	C	980.19	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.428;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=0.698;QD=12.73;ReadPosRankSum=2.398;SOR=0.800;set=HC	GT:AD:AF:DP	0/1:30,47:0.61:77
chr1	43212431	rs4660662	A	G	5496.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:4,208:0.98:212
chr1	43213103	rs3738498	A	C	3418.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:137,164:0.54:301
chr1	43215930	rs11581921	C	T	3169.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:163,155:0.49:318
chr1	43221187	rs3738502	C	T	2614.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:140,125:0.47:265
chr1	43228189	rs2816593	T	A	4750.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr1	43240998	rs11548275	C	T	810.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:54,40:0.43:94
chr1	43296354	rs12727498	G	T	1973.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:1,72:0.99:73
chr1	43300663	rs4660672	T	C	1159.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	43300921	rs4660673	C	G	1251.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	43302971	rs1466548	C	G	373.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:7,14:0.67:21
chr1	43305753	rs12034000	G	A	5686.77	.	AC=1;AF=0.500;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	0/1:165,253:0.61:418
chr1	43315531	rs56653907	T	C	864.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:50,41:0.45:91
chr1	43392250	rs4658	C	G	1214.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:46,58:0.56:104
chr1	43393245	rs11282849	G	GGGTGAGAAAT	1491.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	43395635	rs2229682	C	T	2347.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:118,115:0.49:233
chr1	43396414	rs11537641	G	A	7032.77	.	AC=1;AF=0.500;AN=2;DB;DP=607;set=Intersection	GT:AD:AF:DP	0/1:269,332:0.55:601
chr1	43408966	rs1385129	G	A	8411.77	.	AC=1;AF=0.500;AN=2;DB;DP=689;set=Intersection	GT:AD:AF:DP	0/1:296,387:0.57:683
chr1	43418026	rs2297972	C	T	1024.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:93,53:0.36:146
chr1	43424519	rs11537640	T	G	1659.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:76,84:0.53:160
chr1	43652281	rs36219136	CA	C	263.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.407;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=1.574;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=0.781;QD=4.32;ReadPosRankSum=-0.868;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:24,37:0.61:61
chr1	43652369	rs6413971	T	C	9492.77	.	AC=2;AF=1.00;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	1/1:0,354:1.00:354
chr1	43663376	rs513009	A	G	4167.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr1	43672636	rs11210812	T	G	2286.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr1	43675467	rs2453412	G	A	12344.77	.	AC=2;AF=1.00;AN=2;DB;DP=451;set=Intersection	GT:AD:AF:DP	1/1:0,447:1.00:447
chr1	43680855	rs4233492	G	A	1973.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr1	43681184	rs612626	C	T	1303.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	43697968	rs3120045	G	A	2050.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr1	43699813	rs3820588	A	G	1967.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	43699935	rs2477561	C	T	8675.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:0,328:1.00:328
chr1	43700140	rs2483688	A	G	13182.77	.	AC=2;AF=1.00;AN=2;DB;DP=505;set=Intersection	GT:AD:AF:DP	1/1:0,496:1.00:496
chr1	43738340	rs10890247	A	C	2662.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr1	43771016	rs3831248	TA	T	8015.73	.	AC=1;AF=0.500;AN=2;DB;DP=475;set=Intersection	GT:AD:AF:DP	0/1:177,270:0.60:447
chr1	43771090	rs3120044	G	A	2204.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:74,90:0.55:164
chr1	43773033	rs2275180	A	G	2803.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:92,109:0.54:201
chr1	43774437	rs1467809	G	A	479.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:21,20:0.49:41
chr1	43774495	rs2282225	G	C	1234.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:38,47:0.55:85
chr1	43774878	rs2282226	C	T	1291.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:69,54:0.44:123
chr1	43777852	rs1999595	C	T	7338.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr1	43779564	rs3120276	T	C	5557.77	.	AC=1;AF=0.500;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	0/1:172,259:0.60:431
chr1	43779724	rs138876276	TTG	T	286.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.101;ClippingRankSum=0.000;DB;DP=398;ExcessHet=3.0103;FS=3.451;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=3.915;QD=0.92;ReadPosRankSum=0.219;SOR=1.068;set=HC	GT:AD:AF:DP	0/1:263,48:0.15:311
chr1	43779869	rs2991990	T	G	651.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:26,28:0.52:54
chr1	43782846	rs1198982	G	A	882.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:49,43:0.47:92
chr1	43784956	rs1199039	A	G	2126.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:136,97:0.42:233
chr1	43826099	rs2069385	A	G	6413.77	.	AC=1;AF=0.500;AN=2;DB;DP=495;set=Intersection	GT:AD:AF:DP	0/1:207,280:0.57:487
chr1	43826122	rs184312708	A	G	7064.77	.	AC=1;AF=0.500;AN=2;DB;DP=560;set=Intersection	GT:AD:AF:DP	0/1:238,310:0.57:548
chr1	43826312	rs710251	C	A	8649.77	.	AC=1;AF=0.500;AN=2;DB;DP=1129;set=Intersection	GT:AD:AF:DP	0/1:674,444:0.40:1118
chr1	43831210	rs72671106	A	G	4590.77	.	AC=1;AF=0.500;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	0/1:162,212:0.57:374
chr1	43855578	rs839753	G	C	3304.77	.	AC=1;AF=0.500;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	0/1:247,159:0.39:406
chr1	43869235	rs710249	G	C	1147.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:57,54:0.49:111
chr1	43886494	rs2782643	C	T	5730.77	.	AC=1;AF=0.500;AN=2;DB;DP=631;set=Intersection	GT:AD:AF:DP	0/1:338,286:0.46:624
chr1	43887146	rs2782644	G	A	626.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:30,27:0.47:57
chr1	43888602	rs2782645	G	A	2086.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:117,91:0.44:208
chr1	43892189	rs2782646	G	A	9755.77	.	AC=1;AF=0.500;AN=2;DB;DP=1044;MQ=59.99;set=Intersection	GT:AD:AF:DP	0/1:550,487:0.47:1037
chr1	43901011	rs2039531	A	C	3530.77	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:180,159:0.47:339
chr1	43903589	rs2782648	G	T	2304.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:119,103:0.46:222
chr1	43906896	rs2027130	A	G	1069.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:58,51:0.47:109
chr1	43909265	rs2255632	T	C	5819.77	.	AC=1;AF=0.500;AN=2;DB;DP=549;set=Intersection	GT:AD:AF:DP	0/1:275,267:0.49:542
chr1	43912590	rs2782650	A	G	1207.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:98,65:0.40:163
chr1	43913195	rs41270361	C	T	3129.77	.	AC=1;AF=0.500;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	0/1:225,155:0.41:380
chr1	43917409	rs2251804	T	C	8125.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr1	43917637	rs2251802	G	A	3560.77	.	AC=1;AF=0.500;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	0/1:247,180:0.42:427
chr1	43919413	rs6692611	A	G	870.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:71,44:0.38:115
chr1	43998397	rs11350891	GT	G	1400.73	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr1	44035352	rs1065771	C	T	3722.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:139,173:0.55:312
chr1	44035472	rs943513	G	A	1851.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:85,87:0.51:172
chr1	44044422	rs75328447	G	A	759.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:30,32:0.52:62
chr1	44044468	rs11210874	C	T	1790.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:82,82:0.50:164
chr1	44057257	rs2304353	A	G	1650.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:93,82:0.47:175
chr1	44057668	rs7540068	G	T	2597.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:107,121:0.53:228
chr1	44057696	rs7553297	A	G	1756.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:67,79:0.54:146
chr1	44058034	rs2117316	G	A	2762.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:96,112:0.54:208
chr1	44058265	rs3828151	C	A	4231.77	.	AC=1;AF=0.500;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	0/1:147,191:0.57:338
chr1	44064319	rs17849103	A	G	5040.77	.	AC=1;AF=0.500;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	0/1:179,242:0.57:421
chr1	44067859	rs12023161	A	G	6246.77	.	AC=1;AF=0.500;AN=2;DB;DP=572;set=Intersection	GT:AD:AF:DP	0/1:266,297:0.53:563
chr1	44070691	rs17371903	A	G	1203.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:42,51:0.55:93
chr1	44071221	rs631248	G	A	7322.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr1	44072018	rs1065772	C	T	13519.77	.	AC=2;AF=1.00;AN=2;DB;DP=493;set=Intersection	GT:AD:AF:DP	1/1:0,489:1.00:489
chr1	44072066	rs10890266	C	T	15663.77	.	AC=2;AF=1.00;AN=2;DB;DP=573;set=Intersection	GT:AD:AF:DP	1/1:0,569:1.00:569
chr1	44072420	rs539096	A	G	6230.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr1	44075227	rs517622	T	C	5156.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr1	44078359	rs3791149	T	A	2659.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:98,124:0.56:222
chr1	44078384	rs499257	T	C	10305.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr1	44078602	rs3791151	C	A	3215.77	.	AC=1;AF=0.500;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	0/1:194,160:0.45:354
chr1	44079411	rs603542	T	C	8388.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr1	44083110	rs571862	C	T	6776.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr1	44083507	rs641365	T	C	11996.77	.	AC=2;AF=1.00;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	1/1:0,457:1.00:457
chr1	44083519	rs641351	G	A	11620.77	.	AC=2;AF=1.00;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	1/1:0,430:1.00:430
chr1	44084739	rs1143701	C	T	10576.77	.	AC=2;AF=1.00;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	1/1:0,395:1.00:395
chr1	44086080	rs568639	T	C	13128.77	.	AC=2;AF=1.00;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	1/1:1,466:1.00:467
chr1	44086831	rs1143702	C	T	16361.77	.	AC=2;AF=1.00;AN=2;DB;DP=618;set=Intersection	GT:AD:AF:DP	1/1:2,604:1.00:606
chr1	44087496	rs673485	C	T	9439.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:2,331:0.99:333
chr1	44119038	rs3215842	A	AT	333.73	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:20,20:0.50:40
chr1	44121557	rs2274465	C	G	135.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:15,7:0.32:22
chr1	44125962	rs3215843	CA	C	1655.73	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:76,83:0.52:159
chr1	44137257	rs586339	C	A	6989.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr1	44280381	rs37468	A	T	2866.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr1	44280425	rs3791064	T	G	1740.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:90,81:0.47:171
chr1	44290530	rs37458	A	G	3361.77	.	AC=1;AF=0.500;AN=2;DB;DP=555;set=Intersection	GT:AD:AF:DP	0/1:356,194:0.35:550
chr1	44303786	rs10691786	C	CAAAAAAAAA	1361.73	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.57;QD=45.39;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:1,29:0.97:30
chr1	44323736	rs2906465	T	C	3889.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr1	44323841	.	A	T	1674.77	.	AC=1;AF=0.500;AN=2;DP=223;set=Intersection	GT:AD:AF:DP	0/1:131,90:0.41:221
chr1	44386305	rs3120802	C	T	2455.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr1	44386615	rs3120803	A	G	5076.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.15;SOR=0.967;set=HC	GT:AD:AF:DP	1/1:0,187:1.00:187
chr1	44395786	rs2108202	C	T	4904.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr1	44401384	rs2242637	A	G	9519.77	.	AC=2;AF=1.00;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	1/1:0,363:1.00:363
chr1	44415415	rs2240447	C	T	22438.77	.	AC=2;AF=1.00;AN=2;DB;DP=840;set=Intersection	GT:AD:AF:DP	1/1:0,825:1.00:825
chr1	44426025	rs2301993	G	A	3822.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr1	44426948	rs2906596	G	A	18994.77	.	AC=2;AF=1.00;AN=2;DB;DP=703;set=Intersection	GT:AD:AF:DP	1/1:0,691:1.00:691
chr1	44432500	rs4660759	C	G	8851.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr1	44442521	rs12410334	A	C	3105.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr1	44451111	.	GGGGA	G	62.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.128;ClippingRankSum=0.000;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.01;ReadPosRankSum=0.410;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:54,8:0.13:62
chr1	44451114	rs371619921	GA	G	123.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.140;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.00;ReadPosRankSum=1.671;SOR=0.054;set=HC	GT:AD:AF:DP	0/1:51,11:0.18:62
chr1	44451115	rs61096284	A	AGG	999.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-4.251;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.39;ReadPosRankSum=1.218;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:27,34:0.56:61
chr1	44451124	rs75761202	G	T	1005.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.125;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=6.176;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.43;ReadPosRankSum=0.219;SOR=1.931;set=HC	GT:AD:AF:DP	0/1:54,34:0.39:88
chr1	44457215	rs12403025	G	A	1561.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr1	44457305	rs12403036	G	A	4463.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr1	44457739	rs11376967	T	TC	1697.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	44594966	rs2485653	G	A	2015.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:101,90:0.47:191
chr1	44595047	rs11210969	T	A	6240.77	.	AC=1;AF=0.500;AN=2;DB;DP=574;set=Intersection	GT:AD:AF:DP	0/1:274,296:0.52:570
chr1	44595113	rs2429051	G	C	17705.77	.	AC=2;AF=1.00;AN=2;DB;DP=662;set=Intersection	GT:AD:AF:DP	1/1:1,650:1.00:651
chr1	44595410	rs2485652	A	G	5181.77	.	AC=1;AF=0.500;AN=2;DB;DP=544;set=Intersection	GT:AD:AF:DP	0/1:298,236:0.44:534
chr1	44595426	rs2429050	G	A	5387.77	.	AC=1;AF=0.500;AN=2;DB;DP=541;set=Intersection	GT:AD:AF:DP	0/1:287,245:0.46:532
chr1	44595995	rs35084281	G	GC	1212.73	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:65,52:0.44:117
chr1	44679556	rs803369	A	G	5306.77	.	AC=1;AF=0.500;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	0/1:203,248:0.55:451
chr1	44681113	rs1291169	T	C	563.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:18,26:0.59:44
chr1	44684995	rs2799480	T	C	3746.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:101,162:0.62:263
chr1	44788398	rs161721	A	T	2043.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr1	44878509	rs11210991	C	G	401.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:19,16:0.46:35
chr1	45166513	rs2355710	T	A	2607.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:2,90:0.98:92
chr1	45169711	.	T	TA	65.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.240;ClippingRankSum=0.000;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.59;ReadPosRankSum=0.672;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:91,21:0.19:112
chr1	45170012	rs12088087	A	G	692.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	45189855	rs149200146	C	A	5943.77	.	AC=1;AF=0.500;AN=2;DB;DP=526;set=Intersection	GT:AD:AF:DP	0/1:234,286:0.55:520
chr1	45212979	rs34903658	C	CA	131.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.322;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=3.750;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=2.191;QD=1.03;ReadPosRankSum=0.599;SOR=0.311;set=HC	GT:AD:AF:DP	0/1:100,28:0.22:128
chr1	45241523	rs148400247	C	T	1556.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:49,65:0.57:114
chr1	45293709	rs11573586	G	A	4331.77	.	AC=1;AF=0.500;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	0/1:195,200:0.51:395
chr1	45362992	rs263978	T	C	2381.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:132,120:0.48:252
chr1	45470130	rs7528534	T	C	3018.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr1	45472798	rs147908761	TTGTGTGTG	T,TTG	2932.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=122;set=Intersection	GT:AF:DP	1/2:0.57,0.41:81
chr1	45474157	rs2298006	G	A	3757.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr1	45475566	rs6429552	A	G	3319.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr1	45479874	rs6698485	G	T	3167.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr1	45504720	rs7551698	G	C	2772.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:177,145:0.45:322
chr1	45504858	rs61788380	G	T	2216.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:67,95:0.59:162
chr1	45524213	rs3738246	C	T	637.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:44,30:0.41:74
chr1	45671599	rs188223265	G	A	1743.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:51,71:0.58:122
chr1	45671966	rs4454584	A	G	3942.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:108,167:0.61:275
chr1	45796269	rs3219493	G	C	5556.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr1	45797505	rs3219489	C	G	4614.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr1	45798555	rs3219487	T	C	20578.77	.	AC=2;AF=1.00;AN=2;DB;DP=769;set=Intersection	GT:AD:AF:DP	1/1:0,765:1.00:765
chr1	45805566	rs3219468	G	C	25243.77	.	AC=2;AF=1.00;AN=2;DB;DP=950;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.83;SOR=0.757;set=HC	GT:AD:AF:DP	1/1:0,941:1.00:941
chr1	45810923	rs3893383	G	A	12638.77	.	AC=2;AF=1.00;AN=2;DB;DP=466;set=Intersection	GT:AD:AF:DP	1/1:0,452:1.00:452
chr1	45813441	rs2298018	T	C	1846.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	45813820	rs2153607	G	A	2302.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr1	45864655	.	GAA	G	566.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.704;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;FS=3.493;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=28.34;ReadPosRankSum=0.379;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:2,18:0.90:20
chr1	45864673	.	A	C	614.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.614;ClippingRankSum=0.000;DP=23;ExcessHet=3.0103;FS=4.031;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.73;ReadPosRankSum=0.164;SOR=2.636;set=HC	GT:AD:AF:DP	1/1:2,21:0.91:23
chr1	45864695	rs7532762	C	A	519.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	45887288	rs3790582	T	C	1865.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr1	45961955	rs937290	A	G	1596.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	45962894	rs61788289	T	G	4101.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.092;ClippingRankSum=0.000;DB;DP=315;ExcessHet=3.0103;FS=0.437;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.40;ReadPosRankSum=0.297;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:126,180:0.59:306
chr1	45965340	rs7546268	T	C	7731.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:1,256:1.00:257
chr1	45981512	rs2356559	T	C	7961.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chr1	45984852	rs34857974	ATGT	A	4466.73	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr1	46027355	rs512083	T	C	2498.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:78,107:0.58:185
chr1	46050004	rs57257530	TTCGG	T	3652.73	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr1	46057144	rs2991981	A	G	347.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	46065998	rs3014211	T	C	11930.77	.	AC=2;AF=1.00;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	1/1:0,451:1.00:451
chr1	46073489	rs2230657	G	A	2897.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr1	46078630	rs2050376	A	G	604.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:1,21:0.95:22
chr1	46078854	rs2230658	A	G	2288.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:1,87:0.99:88
chr1	46078884	rs2230659	C	T	2462.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:1,91:0.99:92
chr1	46080530	rs2991985	T	C	1031.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:37,43:0.54:80
chr1	46080947	rs1972410	A	C	10200.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	1/1:0,377:1.00:377
chr1	46081940	rs2356581	T	A	3506.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr1	46081960	rs2253862	C	T	4411.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr1	46082431	rs2991988	C	A	8102.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr1	46085852	rs2275085	C	T	2093.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr1	46085879	rs2275086	C	G	3623.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr1	46086077	rs3014246	C	T	6125.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr1	46086329	rs11590549	C	T	1377.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:56,57:0.50:113
chr1	46086913	rs3014245	C	T	2565.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr1	46087577	rs3014242	G	A	22764.77	.	AC=2;AF=1.00;AN=2;DB;DP=896;set=Intersection	GT:AD:AF:DP	1/1:0,879:1.00:879
chr1	46087879	rs3014241	A	G	10507.77	.	AC=2;AF=1.00;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	1/1:0,370:1.00:370
chr1	46089225	rs3014240	C	G	12675.77	.	AC=2;AF=1.00;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	1/1:0,440:1.00:440
chr1	46095130	.	C	CG	55	.	AC=1;AF=0.500;AN=2;BRF=0.38;FR=0.5000;HP=12;HapScore=2;MGOF=3;MMLQ=27;MQ=61.96;NF=5;NR=1;PP=55;QD=10.0;SC=AGGTAATCCCCCCCCCCCCCA;SbPval=0.84;Source=Platypus;TC=11;TCF=8;TCR=3;TR=6;WE=46095138;WS=46095122;set=Platypus	GT:AD:AF:DP	0/1:5,6:0.55:11
chr1	46124663	rs6671802	A	G	2784.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:156,138:0.47:294
chr1	46347875	rs56242896	A	T	445.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.437;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.31;ReadPosRankSum=1.868;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:28,33:0.54:61
chr1	46347878	rs201525530	AT	A	417.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.126;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=1.136;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.74;ReadPosRankSum=2.489;SOR=0.962;set=HC	GT:AD:AF:DP	0/1:30,32:0.52:62
chr1	46347879	rs10890362	T	A	625.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.500;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=1.136;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.09;ReadPosRankSum=-2.501;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:32,30:0.48:62
chr1	46347910	rs6665193	G	A	2037.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:57,91:0.61:148
chr1	46379518	rs4256763	A	G	3607.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:141,171:0.55:312
chr1	46424964	rs4460582	G	A	5346.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr1	46466721	rs11589562	T	C	6310.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.283;ClippingRankSum=0.000;DB;DP=515;ExcessHet=3.0103;FS=1.119;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.42;ReadPosRankSum=0.321;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:205,303:0.60:508
chr1	46476587	rs11211247	T	G	2357.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:80,104:0.57:184
chr1	46485548	rs946529	G	T	228.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:12,10:0.45:22
chr1	46485562	rs946528	C	T	411.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	46487552	rs2275426	G	A	3932.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.170;ClippingRankSum=0.000;DB;DP=398;ExcessHet=3.0103;FS=0.375;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.08;ReadPosRankSum=-0.396;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:205,185:0.47:390
chr1	46487560	rs946524	A	G	14883.77	.	AC=2;AF=1.00;AN=2;DB;DP=452;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.60;SOR=1.115;set=HC	GT:AD:AF:DP	1/1:0,443:1.00:443
chr1	46491635	rs785478	C	T	3267.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr1	46493460	rs1707336	T	G	3570.77	.	AC=1;AF=0.500;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	0/1:185,174:0.48:359
chr1	46495024	rs3795318	G	A	1992.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:122,96:0.44:218
chr1	46495434	rs2236560	G	A	1507.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	46496709	rs925524	A	G	5272.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr1	46497340	rs140303775	GGT	G	124.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.808;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=8.339;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.34;ReadPosRankSum=0.862;SOR=0.128;set=HC	GT:AD:AF:DP	0/1:81,12:0.13:93
chr1	46498375	rs1622208	A	G	6131.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr1	46500613	rs17855317	T	C	8090.77	.	AC=1;AF=0.500;AN=2;DB;DP=752;MQ=60.01;set=Intersection	GT:AD:AF:DP	0/1:374,371:0.50:745
chr1	46511487	rs2297883	G	C	2958.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr1	46521517	rs785468	G	A	7737.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:2,308:0.99:310
chr1	46521559	rs785467	A	T	8256.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:2,311:0.99:313
chr1	46546208	rs1768803	T	C	1489.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:73,64:0.47:137
chr1	46598269	rs1707304	C	A	5386.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.180;ClippingRankSum=0.000;DB;DP=423;ExcessHet=3.0103;FS=0.537;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.83;ReadPosRankSum=-2.209;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:172,248:0.59:420
chr1	46598273	rs1707303	A	C	16265.77	.	AC=2;AF=1.00;AN=2;DB;DP=436;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.57;SOR=1.027;set=HC	GT:AD:AF:DP	1/1:0,433:1.00:433
chr1	46655158	rs6659553	T	C	5289.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr1	46739974	.	A	AT	322.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.186;ClippingRankSum=0.000;DP=351;ExcessHet=3.0103;FS=3.913;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.833;QD=1.19;ReadPosRankSum=-0.870;SOR=1.053;set=HC	GT:AD:AF:DP	0/1:218,54:0.20:272
chr1	46806393	rs41293273	T	C	277.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:14,11:0.44:25
chr1	46806429	rs41293275	A	T	699.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:22,27:0.55:49
chr1	46806480	rs17361749	C	T	1408.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:47,63:0.57:110
chr1	46806550	rs41293277	C	T	3193.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:107,151:0.59:258
chr1	46806703	rs10489769	A	G	1562.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:86,75:0.47:161
chr1	46810405	rs79697925	TG	T	1607.73	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:52,62:0.54:114
chr1	46810670	rs17361763	T	C	5525.77	.	AC=1;AF=0.500;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	0/1:212,254:0.55:466
chr1	46810842	rs6684274	C	T	1534.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:62,65:0.51:127
chr1	46812444	rs17357676	A	G	450.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:17,19:0.53:36
chr1	46812519	rs17361791	A	G	1192.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:45,53:0.54:98
chr1	46818442	rs41294478	G	A	953.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.012;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.18;ReadPosRankSum=0.405;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:18,25:0.58:43
chr1	46818452	rs17413701	A	G	994.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.257;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=1.320;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.63;ReadPosRankSum=0.768;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:20,26:0.57:46
chr1	46818479	rs7515598	C	T	968.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:30,43:0.59:73
chr1	46818502	rs41294480	A	G	623.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:61,36:0.37:97
chr1	46818508	rs7529674	T	C	1505.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:41,68:0.62:109
chr1	46826587	rs55887761	C	A	392.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:16,19:0.54:35
chr1	46827214	rs324414	A	C	1470.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr1	46827485	rs1053624	C	T	2650.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:75,118:0.61:193
chr1	46860237	rs72890727	G	A	494.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.204;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.31;ReadPosRankSum=-0.024;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:23,25:0.52:48
chr1	46870761	rs324420	C	A	4947.77	.	AC=1;AF=0.500;AN=2;DB;DP=580;set=Intersection	GT:AD:AF:DP	0/1:328,246:0.43:574
chr1	46871986	rs324419	T	C	16579.77	.	AC=2;AF=1.00;AN=2;DB;DP=623;set=Intersection	GT:AD:AF:DP	1/1:2,619:1.00:621
chr1	46877180	rs6662982	G	A	4140.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:159,189:0.54:348
chr1	46976837	rs1886116	C	T	17337.77	.	AC=2;AF=1.00;AN=2;DB;DP=667;set=Intersection	GT:AD:AF:DP	1/1:7,645:0.99:652
chr1	47013180	rs10890404	A	G	11110.77	.	AC=2;AF=1.00;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	1/1:2,408:1.00:410
chr1	47013364	rs1258041	T	C	5386.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;MQ=60.05;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr1	47014821	.	A	AAAAAG	5887.73	.	AC=2;AF=1.00;AN=2;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.20;QD=39.51;SOR=1.130;set=HC	GT:AD:AF:DP	1/1:0,149:1.00:149
chr1	47046465	rs60914701	AC	A	533.73	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:17,19:0.53:36
chr1	47059934	rs1258021	T	C	11240.77	.	AC=2;AF=1.00;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	1/1:0,429:1.00:429
chr1	47060078	rs7556307	G	A	802.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:44,36:0.45:80
chr1	47075932	rs3818323	C	T	894.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:37,38:0.51:75
chr1	47078637	rs4660947	T	C	6992.77	.	AC=1;AF=0.500;AN=2;DB;DP=800;set=Intersection	GT:AD:AF:DP	0/1:443,353:0.44:796
chr1	47080665	rs11211328	C	T	3644.77	.	AC=1;AF=0.500;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	0/1:241,184:0.43:425
chr1	47080679	rs6671527	G	A	3545.77	.	AC=1;AF=0.500;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	0/1:218,173:0.44:391
chr1	47080741	rs12029680	C	T	2053.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:104,95:0.48:199
chr1	47099346	rs723333	C	A	3703.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr1	47108828	rs736188	T	C	2767.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr1	47109089	rs1745377	A	G	1830.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:55,80:0.59:135
chr1	47110668	rs1258054	G	C	48.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:17,4:0.19:21
chr1	47110712	rs1258053	C	T	350.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:30,18:0.38:48
chr1	47110766	rs3215990	G	GC	3727.73	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr1	47118067	rs620913	G	A	1100.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:55,32:0.37:87
chr1	47118096	rs2289446	C	A	1602.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:85,53:0.38:138
chr1	47118168	rs2289447	C	T	6574.77	.	AC=1;AF=0.500;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	0/1:255,174:0.41:429
chr1	47118189	rs620431	G	T	7253.77	.	AC=1;AF=0.500;AN=2;DB;DP=559;set=Intersection	GT:AD:AF:DP	0/1:336,218:0.39:554
chr1	47124204	rs34308534	C	CA	605.73	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:38,29:0.43:67
chr1	47124479	rs611468	A	G	1359.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:63,63:0.50:126
chr1	47130873	rs594118	A	G	510.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:37,26:0.41:63
chr1	47133811	rs11211337	T	C	1476.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.21;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	47138444	rs616249	C	T	1326.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	47138819	rs614486	T	G	10457.77	.	AC=1;AF=0.500;AN=2;DB;DP=1035;set=Intersection	GT:AD:AF:DP	0/1:543,483:0.47:1026
chr1	47139103	rs1025806	C	T	6783.77	.	AC=1;AF=0.500;AN=2;DB;DP=712;set=Intersection	GT:AD:AF:DP	0/1:377,314:0.45:691
chr1	47154272	rs2304745	C	T	485.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:25,21:0.46:46
chr1	47155462	rs2241862	G	A	618.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:38,28:0.42:66
chr1	47182206	rs3737731	C	T	948.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:59,41:0.41:100
chr1	47276728	rs2297812	G	C	8828.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr1	47279789	rs2297811	C	T	14013.77	.	AC=2;AF=1.00;AN=2;DB;DP=502;set=Intersection	GT:AD:AF:DP	1/1:0,492:1.00:492
chr1	47280746	rs3215983	GAT	G	10276.73	.	AC=2;AF=1.00;AN=2;DB;DP=236;MQ=60.05;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr1	47280859	rs2297810	G	A	6548.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;MQ=60.04;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr1	47280884	rs4646491	C	T	5638.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;MQ=60.05;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr1	47282772	rs2297809	C	T	13116.77	.	AC=2;AF=1.00;AN=2;DB;DP=501;MQ=59.99;set=Intersection	GT:AD:AF:DP	1/1:0,492:1.00:492
chr1	47282888	rs35333582	C	T	3819.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr1	47351034	rs5003006	T	A	455.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.45;QD=30.38;SOR=4.047;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	47351052	rs5003005	A	T	1050.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.75;QD=31.84;SOR=4.112;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	47395973	rs1126743	G	A	8572.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr1	47398743	rs3890011	G	C	11564.77	.	AC=2;AF=1.00;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	1/1:0,428:1.00:428
chr1	47399810	rs9333013	A	G	6950.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr1	47400059	rs71500102	A	G	6663.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.49;QD=29.62;SOR=1.278;set=HC	GT:AD:AF:DP	1/1:0,225:1.00:225
chr1	47401424	rs2269231	A	T	1734.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr1	47402487	.	TTGTGTG	T,TTG	11119.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=387;set=Intersection	GT:AF:DP	1/2:0.18,0.81:281
chr1	47571943	rs10534549	CT	C	848.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.251;ClippingRankSum=0.000;DB;DP=471;ExcessHet=3.0103;FS=2.689;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=3.407;QD=2.10;ReadPosRankSum=0.996;SOR=0.552;set=HC	GT:AD:AF:DP	0/1:278,126:0.31:404
chr1	47652870	rs10549554	CCTTGAG	CAG,C	5402.73	.	AC=2,0;AF=1.00,0.00;ALERT;AN=2;DB;DP=119;set=Intersection	GT:AF:DP	1/1:1.00:116
chr1	47652875	rs10549555	AGC	A	5632.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.55;SOR=3.686;set=HC	GT:AD:AF:DP	1/1:0,121:1.00:121
chr1	47652877	.	CCT	ACA	2947	.	AC=2;AF=1.00;AN=2;BRF=0.34;FR=1.0000;HP=1;HapScore=1;MGOF=2;MMLQ=24;MQ=60.0;NF=77;NR=10;PP=2947;QD=20;SC=TTCCCTTGAGCCTCAGGGGGA;SbPval=0.95;Source=Platypus;TC=122;TCF=98;TCR=24;TR=87;WE=47652887;WS=47652860;set=Platypus	GT:AD:AF:DP	1/1:35,87:0.71:122
chr1	47652879	rs60327556	T	A	5643.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.09;SOR=3.223;set=HC	GT:AD:AF:DP	1/1:0,128:1.00:128
chr1	47655816	rs2248907	A	G	667.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:26,26:0.50:52
chr1	47685455	rs927462	T	C	8413.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chr1	47689842	rs34087210	C	G	471.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:31,22:0.42:53
chr1	47691090	rs2273834	T	C	60.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:6,4:0.40:10
chr1	47691568	rs145295250	GCAGA	G	2224.73	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:150,68:0.31:218
chr1	47717189	rs2758735	A	G	6758.77	.	AC=1;AF=0.500;AN=2;DB;DP=617;set=Intersection	GT:AD:AF:DP	0/1:291,318:0.52:609
chr1	47726087	rs13376679	T	C	2665.77	.	AC=1;AF=0.500;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	0/1:263,151:0.36:414
chr1	47728897	rs188812583	T	G	480.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:13,22:0.63:35
chr1	47735280	rs2742104	T	C	811.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:43,37:0.46:80
chr1	47765490	rs9436838	T	C	688.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:1,24:0.96:25
chr1	47767141	rs6689687	C	A	1304.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	47767914	rs3125630	G	A	3924.77	.	AC=1;AF=0.500;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	0/1:235,190:0.45:425
chr1	47770441	rs3122615	A	C	612.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:29,23:0.44:52
chr1	47770806	rs12129594	T	C	520.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.372;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.88;ReadPosRankSum=-0.184;SOR=0.880;set=HC	GT:AD:AF:DP	0/1:16,19:0.54:35
chr1	47799608	rs66904716	G	C	352.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:32,20:0.38:52
chr1	47799639	rs7543016	G	C	2005.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr1	47838652	rs72553947	A	G	381.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:22,20:0.48:42
chr1	47840417	rs3835609	CAT	C	456.73	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:11,14:0.56:25
chr1	47840778	rs72553949	C	T	803.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:31,35:0.53:66
chr1	47841109	rs2253511	T	C	60.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:14,4:0.22:18
chr1	47842431	rs3125648	G	A	3154.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr1	47881907	rs137862650	T	TG	105.87	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.17;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	47882497	rs34082359	C	T	1754.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:79,79:0.50:158
chr1	47882605	rs189628587	C	G	1728.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.348;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.34;ReadPosRankSum=-1.139;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:94,91:0.49:185
chr1	47883019	rs6666370	T	C	939.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.72;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	47883024	rs2820969	A	G	454.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.839;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.93;ReadPosRankSum=1.007;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:2,17:0.89:19
chr1	47904668	rs3046924	T	TCCGCAC	13291.73	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr1	47904909	rs2405913	G	C	3135.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr1	48260116	rs3738314	C	T	1217.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:50,49:0.49:99
chr1	48459907	rs3814006	C	T	9508.77	.	AC=1;AF=0.500;AN=2;DB;DP=848;set=Intersection	GT:AD:AF:DP	0/1:400,442:0.52:842
chr1	48695081	rs212989	G	A	2750.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:102,122:0.54:224
chr1	48697733	rs212991	T	G	13671.77	.	AC=2;AF=1.00;AN=2;DB;DP=512;set=Intersection	GT:AD:AF:DP	1/1:0,505:1.00:505
chr1	48701567	rs6694372	C	T	3850.77	.	AC=1;AF=0.500;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	0/1:166,172:0.51:338
chr1	48707838	rs705430	A	G	4352.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr1	48708228	rs850763	G	T	1168.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:79,56:0.41:135
chr1	48825166	.	T	C	477.77	.	AC=1;AF=0.500;AN=2;DP=33;set=Intersection	GT:AD:AF:DP	0/1:13,20:0.61:33
chr1	48902977	rs2261674	G	C	3274.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr1	49056762	rs151241264	A	AC	484.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.667;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.71;ReadPosRankSum=0.612;SOR=2.226;set=HC	GT:AD:AF:DP	0/1:7,22:0.76:29
chr1	49100332	rs319983	C	T	3317.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr1	49113319	rs319953	T	C	7177.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr1	49113384	rs78266384	C	T	2431.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:97,113:0.54:210
chr1	49128720	rs320007	C	T	3917.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr1	49193394	rs1385152	G	T	2196.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr1	49224584	rs1128934	G	T	6931.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr1	49332724	rs6703833	A	C	5959.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr1	49332969	rs61785986	A	G	3038.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr1	49711281	rs7528510	C	T	700.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	50331725	rs10788920	T	C	3965.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr1	50575675	rs148666401	CTG	C	636.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.342;ClippingRankSum=0.000;DB;DP=264;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.993;QD=3.32;ReadPosRankSum=-1.631;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:152,40:0.21:192
chr1	50661411	rs2480683	C	T	16268.77	.	AC=2;AF=1.00;AN=2;DB;DP=614;set=Intersection	GT:AD:AF:DP	1/1:0,605:1.00:605
chr1	50666515	rs2494876	C	T	6396.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr1	50884773	rs4027495	CCGGCGG	C	352.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.657;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=3.862;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.11;ReadPosRankSum=1.782;SOR=1.309;set=HC	GT:AD:AF:DP	0/1:16,9:0.36:25
chr1	50884778	rs2746610	G	A	320.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.375;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=3.862;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.83;ReadPosRankSum=-2.524;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:9,16:0.64:25
chr1	50884784	rs368034286	G	A	382.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.034;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=1.468;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.76;ReadPosRankSum=0.797;SOR=0.607;set=HC	GT:AD:AF:DP	0/1:17,13:0.43:30
chr1	50956163	rs143167159	AAAGG	A	3130.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.555;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=4.669;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.31;ReadPosRankSum=-2.333;SOR=0.384;set=HC	GT:AD:AF:DP	0/1:84,87:0.51:171
chr1	50956212	rs149582773	C	CAAATACAGTGG	18494.73	.	AC=2;AF=1.00;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	1/1:0,361:1.00:361
chr1	50957509	rs1149790	A	T	6929.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr1	51078089	rs17387761	G	A	2447.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:100,120:0.55:220
chr1	51323764	rs140713080	A	AT	432.73	.	AC=1;AF=0.500;AN=2;DB;DP=35;MQ=60.62;set=Intersection	GT:AD:AF:DP	0/1:14,18:0.56:32
chr1	51425293	rs144699454	CCA	C	77.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.704;ClippingRankSum=0.000;DB;DP=228;ExcessHet=3.0103;FS=5.247;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.37;ReadPosRankSum=-0.803;SOR=0.279;set=HC	GT:AD:AF:DP	0/1:185,25:0.12:210
chr1	51439777	rs1043141	C	T	3412.77	.	AC=1;AF=0.500;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	0/1:214,165:0.44:379
chr1	51753812	rs635590	G	A	699.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:43,33:0.43:76
chr1	51767352	rs41287290	G	A	5667.77	.	AC=1;AF=0.500;AN=2;DB;DP=483;set=Intersection	GT:AD:AF:DP	0/1:213,261:0.55:474
chr1	51767912	rs375305601	GC	G	44.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.750;ClippingRankSum=0.000;DB;DP=284;ExcessHet=3.0103;FS=6.216;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.26;ReadPosRankSum=-0.846;SOR=0.021;set=HC	GT:AD:AF:DP	0/1:154,21:0.12:175
chr1	51787367	rs41287298	T	A	3507.77	.	AC=1;AF=0.500;AN=2;DB;DP=505;set=Intersection	GT:AD:AF:DP	0/1:298,197:0.40:495
chr1	51808567	rs12072333	C	T	294.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:15,14:0.48:29
chr1	51826921	rs17567	T	C	4880.77	.	AC=1;AF=0.500;AN=2;DB;DP=546;set=Intersection	GT:AD:AF:DP	0/1:301,240:0.44:541
chr1	51831744	.	A	AT	1011.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.291;ClippingRankSum=0.000;DP=291;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=0.000;QD=4.82;ReadPosRankSum=1.655;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:127,83:0.40:210
chr1	51871438	rs10529789	G	GACTC	1257.73	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:30,33:0.52:63
chr1	51873951	rs1065754	G	A	3088.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:151,148:0.49:299
chr1	51888749	rs78944908	T	C	1029.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:32,39:0.55:71
chr1	51905949	rs372668692	CTGTG	C,CTG	1428.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.273;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.20;MQRankSum=0.312;QD=28.57;ReadPosRankSum=-0.165;SOR=0.460;set=HC	GT:AD:AF:DP	1/2:1,31,18:0.62,0.36:50
chr1	51913564	rs79437178	T	C	387.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:31,18:0.37:49
chr1	51913695	rs79924227	C	T	1263.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:101,66:0.40:167
chr1	51924226	rs6672300	C	T	504.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:25,25:0.50:50
chr1	51929504	rs5774101	TA	T	709.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.119;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=1.678;QD=11.63;ReadPosRankSum=0.781;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:35,26:0.43:61
chr1	51931124	rs17397993	A	G	776.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:18,32:0.64:50
chr1	51956002	rs146648464	C	A	513.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:33,26:0.44:59
chr1	51956028	rs149178932	G	C	371.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:24,18:0.43:42
chr1	51985042	.	C	T	45	.	AC=1;AF=0.500;AN=2;BRF=0.64;FR=0.5000;HP=3;HapScore=2;MGOF=25;MMLQ=24;MQ=51.8;NF=0;NR=2;PP=45;QD=39.8856062736;SC=ACTTCCCTCCCCACGCCCGCC;SbPval=1.0;Source=Platypus;TC=9;TCF=3;TCR=6;TR=2;WE=51985050;WS=51985032;set=Platypus	GT:AD:AF:DP	0/1:7,2:0.22:9
chr1	51985077	.	T	TGCCCGCCC	330.74	.	AC=2;AF=1.00;AN=2;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.94;QD=47.25;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	52179818	.	G	GT	174.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.485;ClippingRankSum=0.000;DP=147;ExcessHet=3.0103;FS=0.982;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.53;ReadPosRankSum=0.172;SOR=0.471;set=HC	GT:AD:AF:DP	0/1:86,28:0.25:114
chr1	52205661	.	CT	C	152.75	.	AC=1;AF=0.500;AN=2;DP=15;set=Intersection	GT:AD:AF:DP	0/1:3,12:0.80:15
chr1	52211163	rs41296181	T	A	720.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.876;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=1.636;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.14;ReadPosRankSum=0.741;SOR=0.525;set=HC	GT:AD:AF:DP	0/1:60,41:0.41:101
chr1	52213864	rs11802463	A	C	495.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:15,23:0.61:38
chr1	52214167	rs151298477	G	A	54.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.191;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.56;ReadPosRankSum=0.349;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:8,4:0.33:12
chr1	52215444	rs112311838	C	CAG	566.73	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:27,17:0.39:44
chr1	52218109	rs57978189	C	T	1772.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:140,95:0.40:235
chr1	52226569	rs111806026	C	G	683.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:32,28:0.47:60
chr1	52227394	rs77297569	G	C	345.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:12,16:0.57:28
chr1	52238423	rs116521013	G	A	2335.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:181,123:0.40:304
chr1	52242432	rs57902123	CT	C	478.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.089;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=0.902;QD=7.04;ReadPosRankSum=0.779;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:25,43:0.63:68
chr1	52242748	.	C	CT	167.73	.	AC=1;AF=0.500;AN=2;DP=17;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr1	52246746	rs115917342	C	T	132.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:10,6:0.38:16
chr1	52248017	rs6678977	A	G	614.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	52253506	rs140616351	A	G	251.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:23,13:0.36:36
chr1	52256343	rs41293249	A	T	938.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:57,45:0.44:102
chr1	52264064	rs1770791	A	G	5613.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr1	52266120	rs2842581	C	T	1473.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:79,69:0.47:148
chr1	52279650	rs2982846	T	G	2577.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:114,126:0.53:240
chr1	52293638	rs706495	G	A	3032.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr1	52303005	rs12944	G	A	583.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:52,27:0.34:79
chr1	52402856	rs10888741	T	G	870.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:54,38:0.41:92
chr1	52402956	rs10888742	G	A	2300.77	.	AC=1;AF=0.500;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	0/1:200,119:0.37:319
chr1	52489322	rs2783178	G	A	10262.77	.	AC=2;AF=1.00;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	1/1:0,362:1.00:362
chr1	52490418	rs4926906	C	T	1132.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:43,46:0.52:89
chr1	52498370	rs2809917	C	T	1835.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:76,81:0.52:157
chr1	52499070	.	CGCCCGCCACCTGAGGTCCCGCGATCGG	C	9378.73	.	AC=1;AF=0.500;AN=2;DP=557;set=Intersection	GT:AD:AF:DP	0/1:292,249:0.46:541
chr1	52507070	rs2809958	T	A	2591.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:65,109:0.63:174
chr1	52517412	rs7529324	A	G	3527.77	.	AC=1;AF=0.500;AN=2;DB;DP=448;set=Intersection	GT:AD:AF:DP	0/1:264,174:0.40:438
chr1	52703491	rs35385323	G	C	2534.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:80,103:0.56:183
chr1	52705285	rs3790523	A	G	3060.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:138,142:0.51:280
chr1	52729425	rs58847260	TC	T	262.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.630;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=0.000;QD=5.71;ReadPosRankSum=0.016;SOR=0.287;set=HC	GT:AD:AF:DP	0/1:25,21:0.46:46
chr1	52810393	rs58745889	C	T	4022.77	.	AC=1;AF=0.500;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	0/1:155,186:0.55:341
chr1	52820226	rs2820334	G	A	13747.77	.	AC=2;AF=1.00;AN=2;DB;DP=513;set=Intersection	GT:AD:AF:DP	1/1:0,503:1.00:503
chr1	52828384	rs11555349	A	G	6405.77	.	AC=1;AF=0.500;AN=2;DB;DP=595;set=Intersection	GT:AD:AF:DP	0/1:274,315:0.53:589
chr1	52847471	rs3087474	C	T	1091.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:73,56:0.43:129
chr1	52850446	rs3087484	T	C	336.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:20,14:0.41:34
chr1	52851719	rs11205953	G	C	111.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:10,6:0.38:16
chr1	52851729	rs78572338	G	A	184.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr1	52855047	rs6672059	C	T	607.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:18,27:0.60:45
chr1	52863683	rs112369447	T	G	266.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:17,13:0.43:30
chr1	52878300	rs4319263	T	A	1008.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:47,51:0.52:98
chr1	52879588	rs142150881	G	A	3616.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:136,168:0.55:304
chr1	52882406	rs6677047	A	G	2800.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:112,135:0.55:247
chr1	52929339	rs41294510	G	A	4529.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.526;ClippingRankSum=0.000;DB;DP=373;ExcessHet=3.0103;FS=0.382;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.31;ReadPosRankSum=0.760;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:158,210:0.57:368
chr1	52947350	rs369545413	TA	T	158.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.299;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=1.192;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.510;QD=2.17;ReadPosRankSum=-0.661;SOR=0.464;set=HC	GT:AD:AF:DP	0/1:48,25:0.34:73
chr1	52991983	rs57766167	A	G	359.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:8,15:0.65:23
chr1	53072454	rs1970951	T	C	17220.77	.	AC=2;AF=1.00;AN=2;DB;DP=639;set=Intersection	GT:AD:AF:DP	1/1:1,626:1.00:627
chr1	53153432	rs443751	T	C	3248.77	.	AC=1;AF=0.500;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	0/1:194,158:0.45:352
chr1	53153916	.	AT	A	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.038;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=1.674;QD=1.05;ReadPosRankSum=-0.849;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:26,10:0.28:36
chr1	53192187	rs269298	C	T	396.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	53237526	rs1571979	G	A	1469.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:50,63:0.56:113
chr1	53245472	rs9661082	A	T	2706.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:124,132:0.52:256
chr1	53250650	rs6588443	G	A	2843.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:99,132:0.57:231
chr1	53271225	rs487453	T	C	756.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:37,37:0.50:74
chr1	53308665	rs532242	C	G	1928.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:100,93:0.48:193
chr1	53320274	rs480299	G	T	2818.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:167,139:0.45:306
chr1	53323492	rs10788945	C	A	1135.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:57,49:0.46:106
chr1	53333116	rs557847	A	G	1351.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:56,61:0.52:117
chr1	53364976	rs576891	A	G	1750.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:85,78:0.48:163
chr1	53387379	rs7552139	G	C	937.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:24,41:0.63:65
chr1	53543112	rs946590	C	G	5284.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr1	53544439	rs1288388	G	A	33906.77	.	AC=2;AF=1.00;AN=2;DB;DP=1297;set=Intersection	GT:AD:AF:DP	1/1:0,1274:1.00:1274
chr1	53544597	rs1288389	T	C	6395.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr1	53553702	rs1288400	A	G	2701.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr1	53553754	rs1288401	T	C	4435.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr1	53555783	rs1288403	A	C	3900.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr1	53558270	rs1288406	A	G	9361.77	.	AC=2;AF=1.00;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	1/1:0,355:1.00:355
chr1	53559310	rs11206091	T	C	3127.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr1	53571288	rs1288422	C	G	1124.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	53574123	rs1769289	C	T	1348.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	53600047	rs138955039	T	C	1013.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:50,45:0.47:95
chr1	53608133	rs3737990	C	A	2803.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:162,140:0.46:302
chr1	53662823	rs72673121	C	A	4273.77	.	AC=1;AF=0.500;AN=2;DB;DP=451;set=Intersection	GT:AD:AF:DP	0/1:228,214:0.48:442
chr1	53676448	rs1799821	G	A	7485.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr1	53679229	rs1799822	A	G	1852.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:44,79:0.64:123
chr1	53681699	rs1134688	T	G	4903.77	.	AC=1;AF=0.500;AN=2;DB;DP=472;set=Intersection	GT:AD:AF:DP	0/1:228,232:0.50:460
chr1	53681756	rs370689910	G	C	2725.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:93,110:0.54:203
chr1	53683921	rs12140585	C	G	2091.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:125,97:0.44:222
chr1	53684324	rs3736118	A	G	972.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:39,37:0.49:76
chr1	53684525	rs436887	C	G	2841.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.406;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=6.344;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.55;ReadPosRankSum=-0.030;SOR=2.001;set=HC	GT:AD:AF:DP	1/1:8,118:0.94:126
chr1	53686383	rs1679913	C	G	2243.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr1	53694388	rs2275087	T	C	471.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:11,19:0.63:30
chr1	53699129	rs17192655	G	C	453.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:45,24:0.35:69
chr1	53712727	rs5174	C	T	3520.77	.	AC=1;AF=0.500;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	0/1:187,163:0.47:350
chr1	53716416	rs3737983	G	A	3403.77	.	AC=1;AF=0.500;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	0/1:235,177:0.43:412
chr1	53720974	.	C	A	3563.77	.	AC=1;AF=0.500;AN=2;DP=322;set=Intersection	GT:AD:AF:DP	0/1:142,174:0.55:316
chr1	53723190	rs869987	G	T	445.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:48,26:0.35:74
chr1	53732315	rs2297660	G	T	1305.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:65,61:0.48:126
chr1	53736613	rs7542607	A	G	496.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:19,24:0.56:43
chr1	53738183	rs7546246	A	G	3133.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:160,139:0.46:299
chr1	53738400	rs138032564	T	C	4013.77	.	AC=1;AF=0.500;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	0/1:199,178:0.47:377
chr1	53742506	rs56300220	A	G	808.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:33,36:0.52:69
chr1	53755151	rs12035577	T	C	6296.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr1	53792651	rs3820198	A	C	5942.77	.	AC=1;AF=0.500;AN=2;DB;DP=528;set=Intersection	GT:AD:AF:DP	0/1:258,263:0.50:521
chr1	53793511	rs4926972	T	C	1185.73	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:62,62:0.50:124
chr1	53930551	rs943514	G	A	2623.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:123,123:0.50:246
chr1	53974987	rs10749691	G	T	3950.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:2,143:0.99:145
chr1	53990321	rs541224	C	T	2600.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr1	54060016	rs35227000	G	C	4797.77	.	AC=1;AF=0.500;AN=2;DB;DP=444;set=Intersection	GT:AD:AF:DP	0/1:225,213:0.49:438
chr1	54060248	rs4307514	T	C	3569.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;MQ=59.94;set=Intersection	GT:AD:AF:DP	0/1:146,159:0.52:305
chr1	54331763	rs1883453	A	G	1722.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:73,83:0.53:156
chr1	54344282	rs2272928	C	A	2103.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:63,99:0.61:162
chr1	54356113	rs61774833	C	T	2414.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:165,122:0.43:287
chr1	54370264	rs2294511	A	T	657.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:50,30:0.38:80
chr1	54370306	rs2294512	G	A	2062.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:68,94:0.58:162
chr1	54375570	rs2235544	C	A	14766.77	.	AC=2;AF=1.00;AN=2;DB;DP=562;set=Intersection	GT:AD:AF:DP	1/1:0,555:1.00:555
chr1	54375701	rs11206244	C	T	1977.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:92,90:0.49:182
chr1	54389774	rs61674130	TAG	T	680.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	54395673	rs56847995	CA	C	124.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.014;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=2.858;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=1.238;QD=2.01;ReadPosRankSum=-0.358;SOR=0.297;set=HC	GT:AD:AF:DP	0/1:41,21:0.34:62
chr1	54514223	rs41294772	T	C	858.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:24,36:0.60:60
chr1	54605188	rs144802093	C	T	910.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:86,52:0.38:138
chr1	54605318	rs3841798	T	TGG	459.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.386;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=16.704;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=-0.879;QD=3.13;ReadPosRankSum=-0.853;SOR=2.311;set=HC	GT:AD:AF:DP	0/1:122,25:0.17:147
chr1	54605319	rs36013100	G	GC	2709.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:36,120:0.77:156
chr1	54606804	rs3766465	C	T	4595.77	.	AC=1;AF=0.500;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	0/1:199,203:0.50:402
chr1	54607051	rs671103	A	G	16753.77	.	AC=2;AF=1.00;AN=2;DB;DP=629;set=Intersection	GT:AD:AF:DP	1/1:0,619:1.00:619
chr1	54607157	rs671539	G	A	2832.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:79,123:0.61:202
chr1	54618435	rs7528345	A	T	19551.77	.	AC=2;AF=1.00;AN=2;DB;DP=732;set=Intersection	GT:AD:AF:DP	1/1:1,721:1.00:722
chr1	54636689	rs7552121	A	G	846.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:52,39:0.43:91
chr1	54637167	rs625643	T	C	796.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	54644899	rs61746145	C	G	2623.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:159,130:0.45:289
chr1	54661150	rs946448	C	T	2597.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:127,124:0.49:251
chr1	54681920	rs13571	G	C	6305.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:2,229:0.99:231
chr1	54686374	rs612711	T	C	3081.77	.	AC=1;AF=0.500;AN=2;DB;DP=439;set=Intersection	GT:AD:AF:DP	0/1:279,155:0.36:434
chr1	54686464	rs613158	C	T	3820.77	.	AC=1;AF=0.500;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	0/1:259,196:0.43:455
chr1	54690954	rs3088379	T	C	5053.77	.	AC=1;AF=0.500;AN=2;DB;DP=564;set=Intersection	GT:AD:AF:DP	0/1:316,241:0.43:557
chr1	54694214	rs2297026	G	A	1058.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:52,44:0.46:96
chr1	54706733	rs2297027	A	G	3439.77	.	AC=1;AF=0.500;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	0/1:234,172:0.42:406
chr1	54709184	rs146155582	C	T	392.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:13,17:0.57:30
chr1	54870481	.	TG	T	53.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.107;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.36;ReadPosRankSum=-0.454;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:11,5:0.31:16
chr1	54871566	.	ACCGC	A	369	.	AC=1;AF=0.500;AN=2;BRF=0.66;FR=0.5000;HP=5;HapScore=2;MGOF=9;MMLQ=20;MQ=60.0;NF=0;NR=5;PP=369;QD=78.8;SC=CCTGCCTCCCACCGCCCGCCC;SbPval=1.0;Source=Platypus;TC=12;TCF=3;TCR=9;TR=5;WE=54871577;WS=54871556;set=Platypus	GT:AD:AF:DP	1/0:7,5:0.42:12
chr1	54871709	.	T	TCGCCGCCGCCGC	1423.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.899;ClippingRankSum=0.000;DP=115;ExcessHet=3.0103;FS=2.755;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=1.448;QD=15.48;ReadPosRankSum=0.877;SOR=0.564;set=HC	GT:AD:AF:DP	0/1:55,37:0.40:92
chr1	55014099	rs299874	C	T	5395.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.34;SOR=1.059;set=HC	GT:AD:AF:DP	1/1:0,119:1.00:119
chr1	55014102	rs12133271	T	C	5362.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.32;SOR=0.968;set=HC	GT:AD:AF:DP	1/1:0,121:1.00:121
chr1	55014160	rs299872	C	T	2249.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr1	55066759	rs1655534	T	C	673.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:17,17:0.50:34
chr1	55066789	rs10533779	CAT	C	1098.73	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:27,27:0.50:54
chr1	55066813	rs74310754	C	CAT	1475.73	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:29,39:0.57:68
chr1	55069986	rs746503	T	C	1370.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:56,62:0.53:118
chr1	55072726	rs1616691	T	C	1234.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:34,50:0.60:84
chr1	55074840	rs1617287	T	A	6207.77	.	AC=1;AF=0.500;AN=2;DB;DP=490;set=Intersection	GT:AD:AF:DP	0/1:213,267:0.56:480
chr1	55074922	rs2289016	G	A	2785.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:140,124:0.47:264
chr1	55075452	rs1368883	G	A	3165.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:100,147:0.60:247
chr1	55078046	rs1655528	T	C	1142.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	55080612	rs147772009	GGTGT	G,GGTGTGTGTGT	3347.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=170;set=Intersection	GT:AF:DP	1/2:0.53,0.39:132
chr1	55080629	rs1702015	A	G	4811.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.473;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=5.909;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=35.12;ReadPosRankSum=-0.442;SOR=1.373;set=HC	GT:AD:AF:DP	1/1:7,130:0.95:137
chr1	55080629	.	ATGTGCG	GTGTGCA,GTGTGCG	2886	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.43;FR=0.5000,0.5000;HP=1;HapScore=3;MGOF=5;MMLQ=25;MQ=60.0;NF=12,28;NR=34,70;PP=2886,2668;QD=20;SC=GTGTGTGTGCATGTGCGTGCA;SbPval=0.65;Source=Platypus;TC=98;TCF=28;TCR=70;TR=46,98;WE=55080643;WS=55080602;set=Platypus	GT:AF:DP	0/1:0.47:98
chr1	55080635	rs1655525	G	A	2275.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.973;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.96;ReadPosRankSum=2.409;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:58,62:0.52:120
chr1	55085684	rs200147461	GA	G	5840.73	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:140,152:0.52:292
chr1	55085687	rs61770426	G	C	5849.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:140,153:0.52:293
chr1	55100328	rs6588520	T	C	636.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:37,28:0.43:65
chr1	55118566	rs1655520	C	G	6899.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr1	55119289	rs9332417	G	C	9505.77	.	AC=1;AF=0.500;AN=2;DB;DP=863;set=Intersection	GT:AD:AF:DP	0/1:419,437:0.51:856
chr1	55119442	rs114952619	C	T	7575.77	.	AC=1;AF=0.500;AN=2;DB;DP=768;set=Intersection	GT:AD:AF:DP	0/1:400,354:0.47:754
chr1	55119515	rs1655519	T	G	8473.77	.	AC=1;AF=0.500;AN=2;DB;DP=1042;set=Intersection	GT:AD:AF:DP	0/1:606,430:0.42:1036
chr1	55119534	rs17399810	C	T	13764.77	.	AC=1;AF=0.500;AN=2;DB;DP=1092;set=Intersection	GT:AD:AF:DP	0/1:472,615:0.57:1087
chr1	55119546	rs1655518	A	G	40100.77	.	AC=2;AF=1.00;AN=2;DB;DP=1104;set=Intersection	GT:AD:AF:DP	1/1:0,1096:1.00:1096
chr1	55130972	rs471724	C	T	711.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:40,35:0.47:75
chr1	55134379	rs627095	C	T	848.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:68,43:0.39:111
chr1	55134487	rs478513	G	A	4122.77	.	AC=1;AF=0.500;AN=2;DB;DP=495;set=Intersection	GT:AD:AF:DP	0/1:280,209:0.43:489
chr1	55136067	rs2251719	T	G	1609.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:54,63:0.54:117
chr1	55136529	rs480963	T	C	3460.77	.	AC=1;AF=0.500;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	0/1:187,176:0.48:363
chr1	55138673	rs564400	C	T	810.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:32,34:0.52:66
chr1	55139741	rs570218	A	G	1391.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:59,62:0.51:121
chr1	55167773	rs646356	T	A	1939.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:132,102:0.44:234
chr1	55182300	rs1147990	T	A	1512.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:79,77:0.49:156
chr1	55197149	rs3815226	T	C	4398.77	.	AC=1;AF=0.500;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	0/1:242,213:0.47:455
chr1	55199104	rs60670381	TA	AT	125.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.369;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.29;ReadPosRankSum=0.867;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:11,9:0.45:20
chr1	55247097	rs2286203	G	A	2156.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:107,105:0.50:212
chr1	55248074	rs12144325	A	G	6062.77	.	AC=1;AF=0.500;AN=2;DB;DP=545;set=Intersection	GT:AD:AF:DP	0/1:247,295:0.54:542
chr1	55250479	rs78948067	C	T	2269.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:117,116:0.50:233
chr1	55251689	rs586462	T	C	3402.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr1	55252514	rs11581256	C	T	694.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:25,29:0.54:54
chr1	55253346	rs2269999	G	A	1178.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:39,52:0.57:91
chr1	55253575	rs665118	T	C	3889.73	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:1,139:0.99:140
chr1	55266845	rs1147984	C	T	3641.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:162,171:0.51:333
chr1	55271774	rs757581	A	G	559.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:41,30:0.42:71
chr1	55272643	rs6666034	C	G	8844.77	.	AC=1;AF=0.500;AN=2;DB;DP=728;MQ=60.01;set=Intersection	GT:AD:AF:DP	0/1:312,401:0.56:713
chr1	55273580	rs9782980	G	T	2934.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:138,140:0.50:278
chr1	55277430	rs10788986	T	A	324.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:20,17:0.46:37
chr1	55277599	rs600499	T	C	12520.77	.	AC=2;AF=1.00;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	1/1:0,444:1.00:444
chr1	55279345	rs149536795	CCCGGCCT	C	1659.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	55282556	rs733168	A	G	980.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:40,38:0.49:78
chr1	55318108	rs667222	C	T	2774.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:126,132:0.51:258
chr1	55319008	rs631749	T	C	2324.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:89,100:0.53:189
chr1	55319902	rs718265	A	G	2349.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;MQ=60.04;set=Intersection	GT:AD:AF:DP	0/1:139,113:0.45:252
chr1	55319935	rs141309546	GA	G	1509.73	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:75,85:0.53:160
chr1	55330966	rs611057	T	C	3127.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr1	55336950	rs608458	C	G	1852.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr1	55352613	rs79857573	G	A	8773.77	.	AC=1;AF=0.500;AN=2;DB;DP=799;set=Intersection	GT:AD:AF:DP	0/1:367,418:0.53:785
chr1	55446664	rs2253467	G	C	10163.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.78;SOR=2.260;set=HC	GT:AD:AF:DP	1/1:0,222:1.00:222
chr1	55446671	rs2253466	C	T	10696.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.13;SOR=2.100;set=HC	GT:AD:AF:DP	1/1:0,248:1.00:248
chr1	55446697	rs2253465	G	A	9759.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:0,354:1.00:354
chr1	55457710	rs2500326	G	A	9282.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:2,338:0.99:340
chr1	55457815	rs2495513	C	T	3456.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr1	55464743	rs2500340	T	C	2320.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr1	55464790	rs2500341	C	G	5830.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr1	55470811	rs41297877	G	A	3846.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:134,164:0.55:298
chr1	55473043	rs6687801	G	A	597.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:14,25:0.64:39
chr1	55474262	rs33938617	G	A	3746.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:149,166:0.53:315
chr1	55474325	rs6682884	A	C	4277.77	.	AC=1;AF=0.500;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	0/1:162,206:0.56:368
chr1	55474476	rs4339899	C	G	854.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:19,33:0.63:52
chr1	55505732	rs2495482	A	G	5234.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:1,191:0.99:192
chr1	55516781	rs599037	G	T	8713.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr1	55517861	rs613855	C	G	1250.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:52,55:0.51:107
chr1	55517940	rs11800231	G	A	3463.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.382;ClippingRankSum=0.000;DB;DP=321;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.93;ReadPosRankSum=0.372;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:148,169:0.53:317
chr1	55518093	rs11800243	G	A	1784.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:125,88:0.41:213
chr1	55518160	rs11806638	C	A	1043.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:55,47:0.46:102
chr1	55518190	rs45597632	AC	A	1000.73	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:26,40:0.61:66
chr1	55518287	rs11800265	G	A	1032.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:60,52:0.46:112
chr1	55518316	rs2483205	C	T	1212.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:63,62:0.50:125
chr1	55518467	rs2495477	A	G	1814.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr1	55518528	rs494198	C	A	323.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:21,16:0.43:37
chr1	55521899	rs201349983	GGGGCGGA	G	859.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	55523033	rs509504	A	G	8334.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr1	55524116	rs585131	C	T	720.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	55524197	rs540796	A	G	1193.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	55524237	rs562556	G	A	1139.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	55524339	rs368103912	CGTGTGTGTGTGTGT	C	239.76	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	55524387	rs563641	T	C	335.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	55525399	rs45439391	C	T	87.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:10,6:0.38:16
chr1	55525400	rs483462	G	A	188.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chr1	55527323	rs630431	G	A	1171.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:34,49:0.59:83
chr1	55529187	rs505151	G	A	7444.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr1	55538385	rs654674	T	C	3800.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr1	55541174	rs487230	A	G	4169.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr1	55546895	rs683880	T	C	2442.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr1	55555285	rs548852	G	A	2507.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr1	55557859	rs34673217	A	ATT	1960.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	55557864	rs3736992	C	T	1861.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;MQ=60.26;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr1	55558661	rs585203	A	G	903.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:2,32:0.94:34
chr1	55560796	rs503495	T	C	1102.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	55562125	rs580485	G	T	1353.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	55563396	.	GA	G	424.73	.	AC=1;AF=0.500;AN=2;DP=45;set=Intersection	GT:AD:AF:DP	0/1:16,28:0.64:44
chr1	55566411	rs67540253	TTAGTC	T	3872.73	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr1	55567143	rs1165282	T	C	1552.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	55567410	rs615652	A	G	6084.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr1	55571953	rs41301092	T	C	2433.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:69,100:0.59:169
chr1	55572867	rs594226	G	A	5433.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr1	55575670	rs534741	A	C	692.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	55614036	rs34030121	CAT	C	1605.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;MQ=60.85;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	55619422	rs1165230	G	A	408.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	55638075	rs1165222	G	A	6575.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr1	55643837	rs11350615	TA	T	3841.73	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr1	57002613	rs11583161	G	A	1637.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:65,77:0.54:142
chr1	57158051	rs17848595	G	A	3583.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:155,163:0.51:318
chr1	57158150	rs17848596	C	T	4756.77	.	AC=1;AF=0.500;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	0/1:210,230:0.52:440
chr1	57169533	rs79491346	A	G	907.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:25,33:0.57:58
chr1	57185818	rs857141	A	G	2736.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr1	57192353	rs71772656	TAAA	T	982.73	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:38,27:0.42:65
chr1	57209695	rs1156845	T	C	1864.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:96,88:0.48:184
chr1	57219631	rs11404547	G	GA	332.73	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:18,20:0.53:38
chr1	57221553	rs1774808	GA	TG	3113.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;JOINED;set=Intersection	GT:AD:AF:DP	0/1:130,86:0.40:216
chr1	57252615	rs2275733	A	T	267.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:9,11:0.55:20
chr1	57340727	rs652785	C	A	4567.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr1	57351943	rs12137460	T	C	540.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:25,20:0.44:45
chr1	57372591	rs619545	C	T	2709.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr1	57395020	rs2795	A	G	153.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:14,9:0.39:23
chr1	57395251	rs605648	T	C	3635.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:131,166:0.56:297
chr1	57397301	rs683824	G	A	982.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:32,41:0.56:73
chr1	57422484	rs1013579	C	T	15016.77	.	AC=2;AF=1.00;AN=2;DB;DP=569;set=Intersection	GT:AD:AF:DP	1/1:0,561:1.00:561
chr1	57528772	rs1261611	A	G	3514.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr1	57537062	rs12754054	G	A	899.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:68,42:0.38:110
chr1	58946877	rs369039548	T	C	230.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:28,12:0.30:40
chr1	59004979	rs902925	C	T	5913.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr1	59126676	rs232779	A	C	2531.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr1	59127086	rs7523134	G	A	4565.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr1	59127193	rs7525365	C	T	2211.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr1	59131311	rs232790	G	T	3588.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr1	59134607	rs57822474	C	CAG	13913.73	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr1	59150941	rs2206764	G	A	2083.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.42;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr1	59160735	rs2473746	A	G	1438.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.591;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.21;ReadPosRankSum=-0.296;SOR=0.906;set=HC	GT:AD:AF:DP	1/1:1,61:0.98:62
chr1	59160885	rs2064374	A	G	2753.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr1	59160982	rs5774423	ATACT	A	1614.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	59248813	rs2760499	G	C	5058.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr1	59364615	rs11207326	G	C	3172.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr1	59364918	rs6658104	G	A	5471.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr1	60223460	rs590704	A	G	430.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:12,16:0.57:28
chr1	60228310	rs10626387	T	TTC	10835.73	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr1	60280749	rs113730234	GT	G	4136.73	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr1	60287421	rs111605995	G	GT	47.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.052;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.95;ReadPosRankSum=0.100;SOR=0.211;set=HC	GT:AD:AF:DP	0/1:39,11:0.22:50
chr1	60299820	rs618716	C	G	8201.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr1	60392271	rs11572191	G	A	4658.77	.	AC=1;AF=0.500;AN=2;DB;DP=499;set=Intersection	GT:AD:AF:DP	0/1:267,226:0.46:493
chr1	60466814	rs626251	T	C	897.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:84,49:0.37:133
chr1	60466840	rs35944236	TA	T	641.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.372;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.44;ReadPosRankSum=-1.604;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:61,57:0.48:118
chr1	60466911	rs67112814	ACAG	A	1367.73	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:25,36:0.59:61
chr1	60474375	rs17119974	C	T	4260.77	.	AC=1;AF=0.500;AN=2;DB;DP=540;set=Intersection	GT:AD:AF:DP	0/1:317,219:0.41:536
chr1	60475930	rs616949	C	G	3065.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:124,134:0.52:258
chr1	60503594	rs72669614	C	T	1868.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:177,102:0.37:279
chr1	60505578	rs680390	A	G	2758.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr1	60505783	rs12737449	G	C	3811.77	.	AC=1;AF=0.500;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	0/1:249,187:0.43:436
chr1	60505965	rs12723322	T	G	561.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:50,29:0.37:79
chr1	60506744	rs10493277	G	A	2214.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:103,102:0.50:205
chr1	61330929	.	AT	A	48.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.269;ClippingRankSum=0.000;DP=79;ExcessHet=3.0103;FS=1.278;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.63;ReadPosRankSum=0.996;SOR=0.459;set=HC	GT:AD:AF:DP	0/1:62,15:0.19:77
chr1	61548344	rs113913435	TTC	T	1825.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.385;ClippingRankSum=0.000;DB;DP=435;ExcessHet=3.0103;FS=2.150;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.80;ReadPosRankSum=1.500;SOR=0.840;set=HC	GT:AD:AF:DP	0/1:278,102:0.27:380
chr1	61818422	rs7528918	A	G	1433.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:67,46:0.41:113
chr1	61818428	rs145456582	TACACACAC	T	1356.73	.	AC=1;AF=0.500;AN=2;DB;DP=99;MQ=60.54;set=Intersection	GT:AD:AF:DP	0/1:58,40:0.41:98
chr1	61872541	rs10889221	G	A	1845.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:99,82:0.45:181
chr1	61892301	rs5774558	T	TG	13828.73	.	AC=2;AF=1.00;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	1/1:0,373:1.00:373
chr1	61921185	rs11423561	A	AT	1151.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.418;ClippingRankSum=0.000;DB;DP=265;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.37;MQRankSum=3.162;QD=5.67;ReadPosRankSum=-0.366;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:115,88:0.43:203
chr1	62149237	rs12134205	C	G	746.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:49,38:0.44:87
chr1	62160525	rs149200386	T	TTA	533.73	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:13,18:0.58:31
chr1	62160542	rs1151765	A	G	1135.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	62189541	rs17312971	T	C	204.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:14,11:0.44:25
chr1	62231924	rs141761262	T	TTGA	1421.73	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:38,37:0.49:75
chr1	62232031	rs1286835	C	T	9584.77	.	AC=2;AF=1.00;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	1/1:0,358:1.00:358
chr1	62237396	.	C	CT	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.473;ClippingRankSum=0.000;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.85;ReadPosRankSum=0.486;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:39,10:0.20:49
chr1	62253483	rs3762321	G	A	1665.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;MQ=60.07;set=Intersection	GT:AD:AF:DP	0/1:62,80:0.56:142
chr1	62261168	rs7516332	A	G	5807.77	.	AC=1;AF=0.500;AN=2;DB;DP=510;set=Intersection	GT:AD:AF:DP	0/1:225,274:0.55:499
chr1	62330080	rs2799627	T	G	10804.77	.	AC=2;AF=1.00;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	1/1:0,387:1.00:387
chr1	62340855	rs12753462	G	C	1277.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	62341157	rs4598521	T	C	341.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	62350123	rs72229771	GTTTTT	G	1968.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=21.659;MLEAC=1;MLEAF=0.500;MQ=60.51;MQRankSum=0.773;QD=31.25;ReadPosRankSum=2.317;SOR=3.088;set=HC	GT:AD:AF:DP	1/1:5,58:0.92:63
chr1	62365217	rs1412622	C	T	1797.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:108,85:0.44:193
chr1	62365461	rs10889269	G	A	601.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:23,24:0.51:47
chr1	62374267	rs2151122	T	C	443.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:8,16:0.67:24
chr1	62380124	rs4915789	A	G	3626.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr1	62393394	rs2251182	A	G	5821.77	.	AC=1;AF=0.500;AN=2;DB;DP=643;set=Intersection	GT:AD:AF:DP	0/1:329,304:0.48:633
chr1	62417951	.	A	AG	283.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.452;ClippingRankSum=0.000;DP=107;ExcessHet=3.0103;FS=1.180;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.12;ReadPosRankSum=1.701;SOR=0.442;set=HC	GT:AD:AF:DP	0/1:70,21:0.23:91
chr1	62417952	.	A	G	456	.	AC=1;AF=0.500;AN=2;BRF=0.37;FR=0.5000;HP=4;HapScore=1;MGOF=13;MMLQ=24;MQ=59.88;NF=26;NR=6;PP=456;QD=15.3366003921;SC=GAGAGAGAGAAAAATAGGCCC;SbPval=0.49;Source=Platypus;TC=86;TCF=71;TCR=15;TR=32;WE=62417960;WS=62417942;set=Platypus	GT:AD:AF:DP	0/1:54,32:0.37:86
chr1	62417952	rs34366135	A	AG	349.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.226;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=1.206;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.97;ReadPosRankSum=2.212;SOR=0.434;set=HC	GT:AD:AF:DP	0/1:66,22:0.25:88
chr1	62483415	rs140898379	A	G	356.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.552;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.27;ReadPosRankSum=1.014;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:11,14:0.56:25
chr1	62483599	rs34726576	G	A	1959.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:142,99:0.41:241
chr1	62483623	rs41313250	A	G	1953.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:122,94:0.44:216
chr1	62516683	rs2498982	G	C	2585.77	.	AC=1;AF=0.500;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	0/1:218,134:0.38:352
chr1	62545085	rs17379217	C	T	1431.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:72,61:0.46:133
chr1	62579672	rs1475564	A	C	1213.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:52,52:0.50:104
chr1	62579823	rs1475563	G	A	4690.77	.	AC=1;AF=0.500;AN=2;DB;DP=663;set=Intersection	GT:AD:AF:DP	0/1:409,247:0.38:656
chr1	62587014	rs4019806	T	TA	1979.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.151;ClippingRankSum=0.000;DB;DP=397;ExcessHet=3.0103;FS=0.901;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.74;ReadPosRankSum=0.814;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:201,144:0.42:345
chr1	62593893	rs2481664	T	C	189.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:23,11:0.32:34
chr1	62594593	rs2476194	C	T	2333.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:174,123:0.41:297
chr1	62594677	rs2481665	T	C	1726.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:88,77:0.47:165
chr1	62672546	rs2457829	G	A	5195.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr1	62673037	rs7542665	T	C	8231.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr1	62673225	rs7533274	G	A	3426.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr1	62673287	rs2457828	A	C	1067.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:34,44:0.56:78
chr1	62675619	rs4625314	C	T	2002.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr1	62675892	rs2481694	A	G	6688.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.97;SOR=0.759;set=HC	GT:AD:AF:DP	1/1:0,248:1.00:248
chr1	62676284	rs2886644	C	T	1490.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:103,75:0.42:178
chr1	62676612	rs66958136	A	G	2817.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:76,121:0.61:197
chr1	62677048	rs1056517	G	T	3282.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.30;SOR=1.821;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr1	62677048	.	GCC	TCC,TCT	628	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.43;FR=0.5000,0.5000;HP=3;HapScore=2;MGOF=6;MMLQ=28;MQ=60.0;NF=14,4;NR=50,24;PP=628,465;QD=10.355800196;SC=ACCTTAGCACGCCAGGGTGAC;SbPval=0.53;Source=Platypus;TC=64;TCF=14;TCR=50;TR=64,28;WE=62677058;WS=62677038;set=Platypus	GT:AF:DP	0/1:1.00:64
chr1	62677050	rs12137401	C	T	880.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.610;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=3.192;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.12;ReadPosRankSum=-0.313;SOR=1.136;set=HC	GT:AD:AF:DP	0/1:46,41:0.47:87
chr1	62677118	rs12130050	A	G	258.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:18,13:0.42:31
chr1	62704134	rs41289438	A	G	947.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:39,45:0.54:84
chr1	62712999	rs111297754	TG	T	321.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.578;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.32;ReadPosRankSum=1.348;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:8,13:0.62:21
chr1	62713224	rs2941679	C	G	5934.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr1	62713246	rs10889315	G	A	2278.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:123,110:0.47:233
chr1	62728784	rs2666472	A	G	1087.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:38,53:0.58:91
chr1	62728838	rs2258470	T	C	3355.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:72,86:0.54:158
chr1	62728861	rs2260581	T	C	4105.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:85,120:0.59:205
chr1	62728918	rs2262110	G	A	4317.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:160,201:0.56:361
chr1	62729015	rs2262106	G	A	4302.77	.	AC=1;AF=0.500;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	0/1:155,198:0.56:353
chr1	62733939	rs11207950	G	A	779.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:26,30:0.54:56
chr1	62737372	rs4609464	A	C	924.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:41,42:0.51:83
chr1	62738904	rs7516290	T	C	767.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:25,36:0.59:61
chr1	62739198	rs17855078	G	A	5240.77	.	AC=1;AF=0.500;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	0/1:190,236:0.55:426
chr1	62740065	rs12127930	A	G	6408.77	.	AC=1;AF=0.500;AN=2;DB;DP=609;set=Intersection	GT:AD:AF:DP	0/1:289,312:0.52:601
chr1	62740446	rs2666506	T	C	5689.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.252;ClippingRankSum=0.000;DB;DP=330;ExcessHet=3.0103;FS=5.783;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.62;ReadPosRankSum=1.121;SOR=0.538;set=HC	GT:AD:AF:DP	0/1:172,151:0.47:323
chr1	62740449	rs2666507	T	C	5718.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.096;ClippingRankSum=0.000;DB;DP=329;ExcessHet=3.0103;FS=5.746;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.71;ReadPosRankSum=1.370;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:173,150:0.46:323
chr1	62740780	.	TA	T	110.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.345;ClippingRankSum=0.000;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=2.466;QD=1.35;ReadPosRankSum=-2.420;SOR=0.566;set=HC	GT:AD:AF:DP	0/1:63,19:0.23:82
chr1	62939634	rs1168007	C	T	2362.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr1	62943264	rs1168008	C	T	2350.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr1	62945418	rs1183260	A	G	785.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:24,39:0.62:63
chr1	62953183	rs1168025	C	T	1832.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr1	62954372	rs57650980	G	GA	209.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.117;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.83;ReadPosRankSum=0.305;SOR=0.954;set=HC	GT:AD:AF:DP	0/1:20,16:0.44:36
chr1	62960101	rs10889335	A	G	2111.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:81,94:0.54:175
chr1	62960250	rs1168041	T	C	186.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:4,8:0.67:12
chr1	62961928	rs1168038	T	C	506.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	62970184	rs1168027	T	C	55.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:8,4:0.33:12
chr1	62973795	rs1184865	A	G	331.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:27,16:0.37:43
chr1	62976472	rs1168043	T	G	1577.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	63001120	rs1168018	A	C	1943.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:96,90:0.48:186
chr1	63024584	.	G	GT	71.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.326;ClippingRankSum=0.000;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.24;ReadPosRankSum=-1.074;SOR=0.933;set=HC	GT:AD:AF:DP	0/1:44,14:0.24:58
chr1	63027411	rs5774610	AG	A	3210.73	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr1	63044464	rs11207993	C	T	402.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:18,19:0.51:37
chr1	63044645	rs199915737	CA	C	172.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.918;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=7.681;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.60;ReadPosRankSum=-1.143;SOR=2.170;set=HC	GT:AD:AF:DP	0/1:25,23:0.48:48
chr1	63050598	rs3850634	T	G	565.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:26,26:0.50:52
chr1	63052344	rs56200511	CTA	C	1923.73	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:84,54:0.39:138
chr1	63070537	rs67461605	AGTTAATGTG	A	1087.73	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:17,28:0.62:45
chr1	63085483	rs34571440	T	TA	741.73	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:3,39:0.93:42
chr1	63090858	rs6587980	C	T	1591.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:59,63:0.52:122
chr1	63099023	rs10889352	T	C	548.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:19,23:0.55:42
chr1	63113511	rs746735	C	A	951.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:51,45:0.47:96
chr1	63113689	rs1168088	T	C	2377.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr1	63113719	rs1168089	T	C	1096.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:71,50:0.41:121
chr1	63128836	.	G	GA	160.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.392;ClippingRankSum=0.000;DP=91;ExcessHet=3.0103;FS=1.070;MLEAC=1;MLEAF=0.500;MQ=60.47;MQRankSum=3.155;QD=2.40;ReadPosRankSum=0.891;SOR=0.463;set=HC	GT:AD:AF:DP	0/1:47,20:0.30:67
chr1	63153866	rs183409343	C	G	2856.77	.	AC=1;AF=0.500;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:172,142:0.45:314
chr1	63153953	rs4344355	C	T	2265.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:97,112:0.54:209
chr1	63269580	rs12125325	A	G	426.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:14,17:0.55:31
chr1	63270772	rs1927486	C	T	134.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.866;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=4.328;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.18;ReadPosRankSum=1.319;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:16,10:0.38:26
chr1	63270823	.	CT	C	152.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.272;ClippingRankSum=0.000;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.46;ReadPosRankSum=-1.115;SOR=0.791;set=HC	GT:AD:AF:DP	0/1:42,20:0.32:62
chr1	63271010	rs10789128	T	C	239.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:12,11:0.48:23
chr1	63285033	rs3737891	T	C	1174.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:71,51:0.42:122
chr1	63789368	rs114453593	C	T	4358.77	.	AC=1;AF=0.500;AN=2;DB;DP=532;set=Intersection	GT:AD:AF:DP	0/1:304,221:0.42:525
chr1	63881552	rs4630153	C	T	3611.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr1	63902431	rs12023577	A	G	1473.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:70,57:0.45:127
chr1	63915343	rs3790867	A	G	462.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:30,25:0.45:55
chr1	63975830	rs6588047	T	C	789.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	63991140	rs9436686	T	C	1084.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	64022923	rs41311162	G	A	1104.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:71,60:0.46:131
chr1	64114301	rs11208257	T	C	2078.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:83,93:0.53:176
chr1	64117537	rs2269238	G	T	3387.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:137,160:0.54:297
chr1	64125234	rs11208265	G	T	2017.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:92,93:0.50:185
chr1	64125368	rs8294	C	T	2670.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:119,131:0.52:250
chr1	64125383	rs61765314	G	A	2426.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:120,115:0.49:235
chr1	64125439	rs4643	A	C	1170.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:87,63:0.42:150
chr1	64240240	rs606550	C	T	73.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.637;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.71;ReadPosRankSum=0.473;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:7,4:0.36:11
chr1	64515379	rs1772626	C	T	6980.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr1	64608329	rs2762833	G	T	10770.77	.	AC=2;AF=1.00;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	1/1:0,402:1.00:402
chr1	64624612	rs4362024	G	A	2148.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr1	64624842	rs6668545	A	G	14832.77	.	AC=2;AF=1.00;AN=2;DB;DP=550;set=Intersection	GT:AD:AF:DP	1/1:0,547:1.00:547
chr1	64643277	rs7527017	C	T	11945.77	.	AC=2;AF=1.00;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	1/1:0,444:1.00:444
chr1	64669567	rs2806529	A	T	557.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	65016349	rs2164571	A	T	11523.77	.	AC=2;AF=1.00;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	1/1:0,420:1.00:420
chr1	65045602	rs5774708	TA	T	875.73	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:9,57:0.86:66
chr1	65045659	rs142886593	A	G	381.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:22,19:0.46:41
chr1	65068638	rs6665437	T	C	3278.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr1	65099701	rs5774715	G	GT	818.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.798;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=2.488;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.582;QD=5.49;ReadPosRankSum=1.654;SOR=0.970;set=HC	GT:AD:AF:DP	0/1:78,71:0.48:149
chr1	65099978	rs2118102	G	A	2589.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr1	65107372	rs6664905	C	T	4610.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr1	65113351	rs7534210	T	C	743.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	65113568	rs6588100	T	C	5798.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr1	65129233	.	G	GA	155.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.094;ClippingRankSum=0.000;DP=80;ExcessHet=3.0103;FS=3.291;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.26;ReadPosRankSum=1.316;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:48,21:0.30:69
chr1	65141676	.	TTAATAATAA	T,TTAA	3001.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.21;QD=40.02;SOR=2.334;set=HC	GT:AD:AF:DP	1/2:0,51,24:0.68,0.32:75
chr1	65247394	rs2478151	T	C	169.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:9,7:0.44:16
chr1	65255018	rs2500232	G	A	3716.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr1	65268589	rs2274369	T	C	1241.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:56,52:0.48:108
chr1	65280620	rs3790529	G	A	761.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:33,31:0.48:64
chr1	65301669	rs2254002	C	A	349.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:12,14:0.54:26
chr1	65303510	rs4916004	G	A	813.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:18,33:0.65:51
chr1	65311262	rs2230587	G	A	2376.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:107,115:0.52:222
chr1	65326095	rs200014012	TTGCA	T	469.73	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:7,14:0.67:21
chr1	65684425	rs11208611	C	T	2769.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:167,138:0.45:305
chr1	65690461	rs4915685	G	A	274.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:12,13:0.52:25
chr1	66036441	rs1137100	A	G	3974.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr1	66036501	rs2186248	G	T	1463.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	66058513	rs1137101	A	G	8016.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr1	66064293	rs3762273	A	C	247.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:17,13:0.43:30
chr1	66083537	rs4655564	G	A	169.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:18,9:0.33:27
chr1	66085574	rs3790439	T	A	482.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:15,23:0.61:38
chr1	66087301	rs4655743	G	C	292.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:13,13:0.50:26
chr1	66088701	rs12067936	C	A	546.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:47,29:0.38:76
chr1	66091656	rs145580828	ACACT	A	1482.73	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:67,41:0.38:108
chr1	66102257	rs1805096	G	A	3815.77	.	AC=1;AF=0.500;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	0/1:224,188:0.46:412
chr1	66618271	.	ATG	A	2987	.	AC=1;AF=0.500;AN=2;BRF=0.41;FR=0.5000;HP=2;HapScore=1;MGOF=46;MMLQ=22;MQ=59.79;NF=0;NR=24;PP=2987;QD=20;SC=GTGCATATATATGTGTGTGTG;SbPval=1.0;Source=Platypus;TC=75;TCF=3;TCR=72;TR=24;WE=66618280;WS=66618261;set=Platypus	GT:AD:AF:DP	1/0:51,24:0.32:75
chr1	66618316	rs202241040	TACACACACAC	T,TAC	1026.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=41;set=Intersection	GT:AF:DP	1/2:0.42,0.58:26
chr1	66731886	rs6588193	G	C	429.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:13,19:0.59:32
chr1	66732386	rs6588194	G	A	3768.77	.	AC=1;AF=0.500;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	0/1:241,191:0.44:432
chr1	66732529	rs6701329	A	T	681.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:51,31:0.38:82
chr1	66827527	rs149296594	C	T	2046.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:127,100:0.44:227
chr1	66829262	rs783039	A	G	3201.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:100,143:0.59:243
chr1	66831256	rs144339850	C	CA	1728.73	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:82,70:0.46:152
chr1	66831322	rs7538869	T	G	3879.77	.	AC=1;AF=0.500;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	0/1:169,179:0.51:348
chr1	66831370	rs783036	G	A	11617.77	.	AC=2;AF=1.00;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	1/1:0,438:1.00:438
chr1	67000103	rs1445578	A	G	3456.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:146,156:0.52:302
chr1	67000162	rs1445579	T	G	1623.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:74,72:0.49:146
chr1	67094171	rs12402181	G	A	3160.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:133,145:0.52:278
chr1	67101778	rs149719377	AAC	A	1940.73	.	AC=1;AF=0.500;AN=2;DB;DP=99;MQ=60.11;set=Intersection	GT:AD:AF:DP	0/1:40,53:0.57:93
chr1	67101802	rs7546825	A	G	2469.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr1	67109335	rs7526812	A	G	5075.77	.	AC=1;AF=0.500;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	0/1:184,230:0.56:414
chr1	67126114	rs12094526	A	G	16991.77	.	AC=2;AF=1.00;AN=2;DB;DP=625;set=Intersection	GT:AD:AF:DP	1/1:0,617:1.00:617
chr1	67136537	rs6686606	C	T	621.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:24,29:0.55:53
chr1	67136560	rs45467391	G	T	574.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:43,30:0.41:73
chr1	67142675	rs11208943	T	C	2560.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:143,128:0.47:271
chr1	67145322	rs10889644	C	A	17993.77	.	AC=2;AF=1.00;AN=2;DB;DP=669;set=Intersection	GT:AD:AF:DP	1/1:0,653:1.00:653
chr1	67149706	rs10749764	G	C	1218.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	67154730	rs139348429	CAA	C,CA	4345.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.226;ClippingRankSum=0.000;DB;DP=306;ExcessHet=3.0103;FS=2.550;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.04;MQRankSum=0.289;QD=16.84;ReadPosRankSum=0.093;SOR=0.442;set=HC	GT:AD:AF:DP	1/2:13,168,77:0.65,0.30:258
chr1	67155862	rs71660869	TCTC	T	6753.73	.	AC=1;AF=0.500;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	0/1:217,181:0.45:398
chr1	67160336	rs2146904	A	G	2923.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr1	67160884	rs16844	A	G	796.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:31,37:0.54:68
chr1	67160938	rs34260051	T	TAAA	2816.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.373;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=0.381;QD=42.04;ReadPosRankSum=1.468;SOR=0.800;set=HC	GT:AD:AF:DP	1/1:4,63:0.94:67
chr1	67160981	rs1325268	C	T	3552.77	.	AC=1;AF=0.500;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	0/1:183,163:0.47:346
chr1	67194911	rs3078564	TTC	T	8314.73	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr1	67199370	.	C	T	451.77	.	AC=1;AF=0.500;AN=2;DP=44;set=Intersection	GT:AD:AF:DP	0/1:23,20:0.47:43
chr1	67236097	rs1060575	A	T	4580.77	.	AC=1;AF=0.500;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	0/1:169,214:0.56:383
chr1	67236228	.	A	T	1574.77	.	AC=1;AF=0.500;AN=2;DP=171;set=Intersection	GT:AD:AF:DP	0/1:90,73:0.45:163
chr1	67242087	rs3816989	G	A	4657.77	.	AC=1;AF=0.500;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	0/1:194,219:0.53:413
chr1	67242200	rs7541120	G	A	1078.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:89,53:0.37:142
chr1	67242225	rs35979624	CAT	C	1939.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.453;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=1.108;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.09;ReadPosRankSum=1.125;SOR=0.532;set=HC	GT:AD:AF:DP	0/1:32,52:0.62:84
chr1	67242241	rs72451064	TGG	T	1906.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.096;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.09;ReadPosRankSum=-1.202;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:27,49:0.64:76
chr1	67242243	rs148639880	G	GGT	475.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.311;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=1.470;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.61;ReadPosRankSum=2.247;SOR=1.051;set=HC	GT:AD:AF:DP	0/1:51,21:0.29:72
chr1	67242253	rs370292327	T	A	858.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.189;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.63;ReadPosRankSum=-0.844;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:32,31:0.49:63
chr1	67242260	rs35737694	GTA	G	819.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.608;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.89;ReadPosRankSum=-2.190;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:30,29:0.49:59
chr1	67243024	rs2133173	C	A	3146.77	.	AC=1;AF=0.500;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	0/1:229,161:0.41:390
chr1	67266756	rs549148	T	A	3058.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr1	67288045	rs482082	C	T	3692.77	.	AC=1;AF=0.500;AN=2;DB;DP=466;set=Intersection	GT:AD:AF:DP	0/1:277,181:0.40:458
chr1	67292473	rs34718535	A	AT	4169.73	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:79,102:0.56:181
chr1	67292478	rs36067642	T	A	4272.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:87,114:0.57:201
chr1	67303303	rs6698076	A	G	4831.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr1	67306054	rs11208966	C	A	1755.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	67313249	rs57010209	G	A	1209.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:71,62:0.47:133
chr1	67314162	rs79916150	C	T	299.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:14,13:0.48:27
chr1	67337285	rs1280338	C	A	98.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:7,5:0.42:12
chr1	67359195	rs3008881	T	A	472.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:9,17:0.65:26
chr1	67390416	rs3008858	G	C	16815.77	.	AC=2;AF=1.00;AN=2;DB;DP=634;set=Intersection	GT:AD:AF:DP	1/1:1,620:1.00:621
chr1	67390468	rs1886686	C	G	13392.77	.	AC=2;AF=1.00;AN=2;DB;DP=491;MQ=60.04;set=Intersection	GT:AD:AF:DP	1/1:0,488:1.00:488
chr1	67396222	rs3008861	T	G	1283.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	67425311	rs2985794	T	G	816.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	67425494	rs35465377	A	AT	192.74	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	67450263	rs189050888	T	C	2920.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:115,127:0.52:242
chr1	67474977	rs2755271	C	T	177.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	67487119	rs2065002	C	A	4432.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr1	67487374	.	TCCAACACAGACA	T,TCAGACA	5817.73	.	AC=1,1;AF=0.500,0.500;AN=2;ClippingRankSum=0.000;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=65.65;MQRankSum=-0.120;QD=157.24;SOR=0.919;set=HC	GT:AD:AF:DP	1/2:1,9,27:0.24,0.73:37
chr1	67487393	rs72331230	CAG	C	253.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.032;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=65.72;MQRankSum=-1.147;QD=6.51;ReadPosRankSum=-0.355;SOR=0.515;set=HC	GT:AD:AF:DP	0/1:23,16:0.41:39
chr1	67487395	rs11576752	G	C	96.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.517;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=6.880;MLEAC=1;MLEAF=0.500;MQ=65.72;MQRankSum=0.657;QD=2.55;ReadPosRankSum=2.703;SOR=0.116;set=HC	GT:AD:AF:DP	0/1:28,10:0.26:38
chr1	67487399	rs72407410	CAG	C	112.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.193;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=3.838;MLEAC=1;MLEAF=0.500;MQ=65.72;MQRankSum=-0.710;QD=2.75;ReadPosRankSum=-0.294;SOR=0.183;set=HC	GT:AD:AF:DP	0/1:30,11:0.27:41
chr1	67487401	rs11576753	G	C	687.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.036;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=1.492;MLEAC=1;MLEAF=0.500;MQ=65.85;MQRankSum=0.517;QD=18.10;ReadPosRankSum=1.863;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:13,25:0.66:38
chr1	67487407	rs11208992	G	C	2137.73	.	AC=2;AF=1.00;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=65.95;QD=40.33;SOR=1.364;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr1	67508080	rs10546548	CCACT	C	3362.73	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:77,90:0.54:167
chr1	67512903	rs1024229	G	T	3053.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr1	67512920	rs1024230	A	C	3313.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr1	67516316	rs2815383	T	A	463.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	67558739	rs6588237	C	T	3065.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr1	67560897	rs10889653	A	G	2718.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr1	67560956	rs11208997	C	T	4557.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr1	67561056	rs61782288	C	T	1464.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:48,68:0.59:116
chr1	67562106	rs6670381	G	T	1234.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	67577367	rs6588240	A	T	3570.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr1	67579245	rs2144655	G	A	823.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	67579386	rs2144656	A	G	2292.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr1	67591347	rs6691094	A	G	1000.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	67591611	rs11336462	GA	G	456.14	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.949;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=2.496;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.726;QD=6.34;ReadPosRankSum=1.158;SOR=0.360;set=HC	GT:AD:AF:DP	0/1:18,54:0.75:72
chr1	67591660	rs4655520	G	A	850.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	67633812	rs1884444	G	T	6951.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr1	67633963	rs11465770	C	T	668.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:30,30:0.50:60
chr1	67648460	rs6687620	T	C	5087.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr1	67672765	rs7539625	G	A	2276.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:92,104:0.53:196
chr1	67672911	rs7539643	C	T	128.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr1	67685387	rs7530511	T	C	7490.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr1	67705726	rs10889671	A	G	936.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	67795319	rs1495963	T	C	7225.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=0.744;set=HC	GT:AD:AF:DP	1/1:0,281:1.00:281
chr1	67852141	rs12138812	A	G	3499.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr1	67852335	rs2228420	G	A	10271.77	.	AC=2;AF=1.00;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	1/1:0,387:1.00:387
chr1	67861520	rs2229546	C	A	18247.77	.	AC=2;AF=1.00;AN=2;DB;DP=660;set=Intersection	GT:AD:AF:DP	1/1:0,649:1.00:649
chr1	67890526	rs6702742	A	G	240.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.08;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	68151685	rs3783466	C	T	2176.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:108,103:0.49:211
chr1	68151980	rs2759219	T	G	2486.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:79,93:0.54:172
chr1	68153206	rs3171012	T	C	111.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:5,5:0.50:10
chr1	68603432	rs1430754	C	T	1332.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:52,61:0.54:113
chr1	68603586	rs983034	C	T	6984.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr1	68603731	rs1831297	A	G	2752.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr1	68614013	rs2566789	A	G	6287.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr1	68620762	rs3762371	G	A	19291.77	.	AC=2;AF=1.00;AN=2;DB;DP=737;set=Intersection	GT:AD:AF:DP	1/1:0,725:1.00:725
chr1	68905358	rs1925955	G	C	3518.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:106,156:0.60:262
chr1	68943436	rs1924542	G	A	3092.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.898;ClippingRankSum=0.000;DB;DP=205;ExcessHet=3.0103;FS=0.521;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.24;ReadPosRankSum=0.428;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:118,85:0.42:203
chr1	68943442	rs3790476	A	G	3058.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.731;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=1.077;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.43;ReadPosRankSum=2.032;SOR=0.780;set=HC	GT:AD:AF:DP	0/1:127,85:0.40:212
chr1	68944592	.	A	G	1431.77	.	AC=1;AF=0.500;AN=2;DP=153;set=Intersection	GT:AD:AF:DP	0/1:79,73:0.48:152
chr1	68944633	rs12759438	A	T	1991.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:106,92:0.46:198
chr1	68947318	rs3833522	C	CA	6334.73	.	AC=1;AF=0.500;AN=2;DB;DP=785;set=Intersection	GT:AD:AF:DP	0/1:403,349:0.46:752
chr1	68952564	rs144376749	AACAC	A	166.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=23.82;ReadPosRankSum=1.383;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:2,5:0.71:7
chr1	68955444	rs35268401	TA	T	124.73	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr1	68960476	rs4926345	T	G	330.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:12,15:0.56:27
chr1	70034370	rs11280966	C	CCAGCCGCGTG	5853.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.279;ClippingRankSum=0.000;DB;DP=284;ExcessHet=3.0103;FS=2.719;MLEAC=2;MLEAF=1.000;MQ=64.38;MQRankSum=0.920;QD=28.55;ReadPosRankSum=-1.989;SOR=1.730;set=HC	GT:AD:AF:DP	1/1:2,203:0.99:205
chr1	70225832	rs17397812	G	A	182.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:28,10:0.26:38
chr1	70225923	rs1340770	G	A	2253.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:87,102:0.54:189
chr1	70226125	rs12407496	T	C	1843.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:61,80:0.57:141
chr1	70304758	rs12735430	A	G	900.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.259;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=0.712;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.12;ReadPosRankSum=0.164;SOR=0.823;set=HC	GT:AD:AF:DP	0/1:61,50:0.45:111
chr1	70397087	rs7530457	T	C	2623.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:132,123:0.48:255
chr1	70502413	rs59671095	AT	A	903.73	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:17,27:0.61:44
chr1	70587360	rs641909	C	T	2165.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr1	70654981	.	GA	G	350.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.422;ClippingRankSum=0.000;DP=237;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.649;QD=2.64;ReadPosRankSum=0.081;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:76,57:0.43:133
chr1	70716183	rs41287904	A	C	1258.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:33,53:0.62:86
chr1	70742532	.	CA	C	205.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.489;ClippingRankSum=0.000;DP=171;ExcessHet=3.0103;FS=0.729;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.32;ReadPosRankSum=-0.039;SOR=0.595;set=HC	GT:AD:AF:DP	0/1:121,35:0.22:156
chr1	70820008	rs61782675	C	T	5462.77	.	AC=1;AF=0.500;AN=2;DB;DP=513;set=Intersection	GT:AD:AF:DP	0/1:250,259:0.51:509
chr1	70820880	rs55863806	G	A	1829.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:93,88:0.49:181
chr1	70887183	rs6413471	A	C	460.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:26,22:0.46:48
chr1	70904523	rs112004441	T	TTGTG	1258.73	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:102,43:0.30:145
chr1	71331498	rs1409986	A	G	2419.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr1	71334870	rs1536537	C	T	5955.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr1	71419499	rs571705	C	T	1083.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	71440217	rs2072947	C	T	195.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:9,10:0.53:19
chr1	71513289	rs5668	G	A	1157.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:54,51:0.49:105
chr1	71536574	rs11583800	G	C	2463.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:80,114:0.59:194
chr1	71537943	rs11209745	A	G	681.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:81,42:0.34:123
chr1	72058367	rs1334004	C	T	1217.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr1	72058405	rs1334005	T	C	1968.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr1	72058552	rs1413368	G	A	5086.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr1	72242039	rs6424448	G	A	856.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	72747844	rs3101341	C	T	464.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:18,21:0.54:39
chr1	74507711	rs7538410	T	G	637.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	74575182	rs1340472	C	T	1532.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr1	74646514	rs6701961	C	T	3626.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr1	74648182	rs1047127	A	C	1597.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:48,68:0.59:116
chr1	74664149	rs4422957	T	C	3345.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:148,155:0.51:303
chr1	74665493	rs792310	G	A	4517.77	.	AC=1;AF=0.500;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	0/1:189,202:0.52:391
chr1	74666344	rs35329584	A	AC	240.73	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr1	74666507	rs9804006	T	C	639.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:39,33:0.46:72
chr1	74666833	rs17591703	A	G	269.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:11,11:0.50:22
chr1	74669973	rs9425024	T	G	812.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	74670172	rs12046751	A	G	1924.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:97,88:0.48:185
chr1	74671519	rs571848	A	G	526.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:19,25:0.57:44
chr1	74701295	rs505508	T	A	626.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	74705494	rs41289182	G	T	1685.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:58,76:0.57:134
chr1	74716515	rs11437074	C	CT	586.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.539;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.64;ReadPosRankSum=-1.010;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:58,46:0.44:104
chr1	74819077	rs6424586	T	G	5072.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr1	74819199	rs148688114	A	G	648.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:22,28:0.56:50
chr1	74841173	rs2880795	A	C	1156.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	74901739	.	CTT	C,CT	675.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.343;ClippingRankSum=0.000;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.18;MQRankSum=0.391;QD=12.07;ReadPosRankSum=-1.537;SOR=0.981;set=HC	GT:AD:AF:DP	1/2:9,27,20:0.48,0.36:56
chr1	75006027	rs3895907	A	G	9081.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:1,340:1.00:341
chr1	75006076	rs3845348	G	A	5277.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr1	75036783	rs9326115	T	C	6737.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr1	75036812	rs9326116	C	T	9204.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,330:1.00:330
chr1	75037845	rs12723334	A	G	4146.77	.	AC=1;AF=0.500;AN=2;DB;DP=475;set=Intersection	GT:AD:AF:DP	0/1:265,206:0.44:471
chr1	75038228	rs11580409	A	C	7051.77	.	AC=1;AF=0.500;AN=2;DB;DP=687;set=Intersection	GT:AD:AF:DP	0/1:347,329:0.49:676
chr1	75042626	.	T	TA	813.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.201;ClippingRankSum=0.000;DP=160;ExcessHet=3.0103;FS=0.812;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.78;ReadPosRankSum=0.218;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:63,57:0.47:120
chr1	75072264	rs41289216	G	T	2424.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:88,106:0.55:194
chr1	75097426	rs11210490	G	C	2874.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:130,131:0.50:261
chr1	75108863	rs623171	A	C	1080.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:26,47:0.64:73
chr1	75112573	rs151179245	G	GACACAC	42.73	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:7,3:0.30:10
chr1	75132462	rs5775255	T	TA	4553.73	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:15,211:0.93:226
chr1	75172001	rs7527057	T	A	9893.77	.	AC=2;AF=1.00;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	1/1:0,369:1.00:369
chr1	75172756	rs71695861	TAA	T	3399.73	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:21,132:0.86:153
chr1	75175886	rs3819946	T	C	4471.77	.	AC=1;AF=0.500;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	0/1:155,212:0.58:367
chr1	75180401	rs74095154	C	T	5115.77	.	AC=1;AF=0.500;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	0/1:165,216:0.57:381
chr1	75190452	rs1051122	C	T	10222.77	.	AC=2;AF=1.00;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	1/1:0,389:1.00:389
chr1	75199152	rs277373	C	T	3821.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr1	75199214	rs745108	G	A	733.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:14,28:0.67:42
chr1	75214390	rs749690	G	C	1320.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:68,66:0.49:134
chr1	75214441	rs1133891	A	G	1949.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:97,99:0.51:196
chr1	75602384	rs71500673	G	T	1795.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:66,81:0.55:147
chr1	75603055	rs1526503	A	G	1720.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr1	75603101	rs6695423	A	G	448.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:11,18:0.62:29
chr1	75614380	rs35220110	CT	C	3049.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.170;ClippingRankSum=0.000;DB;DP=446;ExcessHet=3.0103;FS=2.287;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=1.756;QD=8.97;ReadPosRankSum=-1.422;SOR=0.879;set=HC	GT:AD:AF:DP	0/1:112,228:0.67:340
chr1	75622616	rs941032	C	T	2620.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:163,131:0.45:294
chr1	75626420	rs2462955	A	T	6173.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr1	75679569	rs3831898	C	CTT	754.73	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:34,34:0.50:68
chr1	75680433	rs687715	G	A	1405.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.268;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=2.786;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.47;ReadPosRankSum=-0.580;SOR=0.950;set=HC	GT:AD:AF:DP	0/1:94,72:0.43:166
chr1	75680545	rs688513	T	G	171.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:17,9:0.35:26
chr1	75681351	rs594470	A	T	300.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:19,13:0.41:32
chr1	75681511	rs595009	T	C	2257.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:129,113:0.47:242
chr1	75685403	rs600734	T	C	4492.77	.	AC=1;AF=0.500;AN=2;DB;DP=505;set=Intersection	GT:AD:AF:DP	0/1:281,220:0.44:501
chr1	75699646	rs10493564	T	C	3038.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:157,142:0.47:299
chr1	75699771	rs10493565	A	G	5643.77	.	AC=1;AF=0.500;AN=2;DB;DP=669;set=Intersection	GT:AD:AF:DP	0/1:376,287:0.43:663
chr1	75699831	rs10493566	G	A	3189.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:198,155:0.44:353
chr1	75702674	rs17096508	G	A	404.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:47,24:0.34:71
chr1	75704070	rs141512125	CATATATATATAT	C	493.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.301;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=5.563;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.43;ReadPosRankSum=-0.114;SOR=3.477;set=HC	GT:AD:AF:DP	0/1:5,13:0.72:18
chr1	75707652	rs7556057	C	T	3266.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:171,156:0.48:327
chr1	75707678	rs141693552	C	T	3475.77	.	AC=1;AF=0.500;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	0/1:181,170:0.48:351
chr1	75716925	rs588098	C	T	9043.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:0,340:1.00:340
chr1	75766186	rs623850	G	A	776.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	75823084	rs1249833	C	T	922.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	76007232	rs211744	C	T	397.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:27,19:0.41:46
chr1	76143443	rs7513363	A	G	1871.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:146,94:0.39:240
chr1	76143458	rs7516122	T	C	1541.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:128,77:0.38:205
chr1	76143505	rs1746748	T	C	2829.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr1	76190568	rs116034618	C	T	1188.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:54,54:0.50:108
chr1	76190569	rs1251075	C	G	1095.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:54,52:0.49:106
chr1	76194054	rs7524467	C	G	1008.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.844;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=3.817;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.61;ReadPosRankSum=1.363;SOR=0.402;set=HC	GT:AD:AF:DP	0/1:53,52:0.50:105
chr1	76194229	rs11316888	GT	G	3269.73	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr1	76194306	rs1146572	A	G	806.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	76198436	rs2275378	T	C	1571.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:77,76:0.50:153
chr1	76198785	rs3818855	G	A	5032.77	.	AC=1;AF=0.500;AN=2;DB;DP=633;set=Intersection	GT:AD:AF:DP	0/1:366,260:0.42:626
chr1	76199345	rs2153126	C	G	3061.77	.	AC=1;AF=0.500;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	0/1:193,150:0.44:343
chr1	76205643	rs12127402	C	A	1224.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:88,64:0.42:152
chr1	76216330	rs11161521	T	C	366.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:15,17:0.53:32
chr1	76227022	rs1061337	A	G	1619.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:82,78:0.49:160
chr1	76234886	rs1146593	A	G	3082.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr1	76252011	rs1146634	G	A	4610.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr1	76252687	rs1146636	T	C	1559.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr1	76253045	rs3831900	T	TA	1573.73	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:46,50:0.52:96
chr1	76255228	rs11161620	G	A	423.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:7,18:0.72:25
chr1	76255613	rs11588643	A	G	680.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:22,29:0.57:51
chr1	76257074	rs35837562	A	AT	171.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.984;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.942;QD=1.17;ReadPosRankSum=-0.413;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:115,32:0.22:147
chr1	76257892	rs12703	A	T	5934.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr1	76260837	rs11161626	C	T	258.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:19,13:0.41:32
chr1	76269372	rs5745323	T	C	1168.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	76269460	rs5745325	G	A	1876.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:96,87:0.48:183
chr1	76276353	rs12122939	T	C	730.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:34,35:0.51:69
chr1	76280543	rs1144339	A	G	609.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.39;SOR=1.358;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	76333163	rs5745433	T	G	886.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:42,41:0.49:83
chr1	76342858	rs5745442	T	G	73.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:7,4:0.36:11
chr1	76344011	rs1493367	C	A	688.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:39,34:0.47:73
chr1	76344711	rs5745449	A	T	1697.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:71,78:0.52:149
chr1	76344920	rs5745453	G	A	533.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	76345640	rs2307077	G	T	618.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:18,26:0.59:44
chr1	76346920	rs5745466	C	CAT	3683.73	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr1	76349534	rs5745485	C	G	849.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:26,35:0.57:61
chr1	76363505	rs2029680	A	C	471.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:20,20:0.50:40
chr1	76378275	rs5745547	G	C	550.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:18,24:0.57:42
chr1	76378357	rs71690142	ATAT	A	1087.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.220;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.63;MQRankSum=1.072;QD=6.08;ReadPosRankSum=1.866;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:91,88:0.49:179
chr1	76378360	.	T	TA	1072.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.876;ClippingRankSum=0.000;DP=189;ExcessHet=3.0103;FS=0.648;MLEAC=1;MLEAF=0.500;MQ=60.63;MQRankSum=-2.058;QD=6.10;ReadPosRankSum=1.281;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:129,47:0.27:176
chr1	76378362	rs2881857	T	A	2095.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.782;ClippingRankSum=0.000;DB;DP=190;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.62;MQRankSum=-2.629;QD=11.03;ReadPosRankSum=-1.341;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:119,71:0.37:190
chr1	76608508	.	C	CT	170.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.066;ClippingRankSum=0.000;DP=206;ExcessHet=3.0103;FS=4.792;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.85;ReadPosRankSum=-0.428;SOR=0.371;set=HC	GT:AD:AF:DP	0/1:162,38:0.19:200
chr1	76608777	rs184095	C	T	1405.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	76771475	rs10782610	G	T	1001.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:68,52:0.43:120
chr1	77042405	rs315029	G	A	5077.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr1	77042631	rs28439552	G	C	7560.73	.	AC=2;AF=1.00;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	1/1:2,270:0.99:272
chr1	77627096	rs839825	G	A	2734.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr1	77634948	rs1779199	G	A	7530.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr1	77752921	rs113213379	TG	T	305.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:17,11:0.39:28
chr1	77763542	rs1167206	G	A	2938.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr1	77883412	rs1532507	C	T	900.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:38,42:0.53:80
chr1	77949123	rs7515509	G	A	956.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.462;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.93;ReadPosRankSum=0.408;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:22,26:0.54:48
chr1	77949129	rs7528932	A	T	913.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.752;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.31;ReadPosRankSum=1.289;SOR=0.880;set=HC	GT:AD:AF:DP	0/1:21,24:0.53:45
chr1	78001881	rs10873948	T	C	1051.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	78024284	rs6675743	T	C	647.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:35,32:0.48:67
chr1	78024345	rs79671213	C	CTAT	2217.73	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:65,58:0.47:123
chr1	78031994	rs7552291	A	G	520.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:29,22:0.43:51
chr1	78033981	rs145860524	AAAATG	A	1459.73	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:36,39:0.52:75
chr1	78045369	rs1565852	G	A	1488.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:94,65:0.41:159
chr1	78046891	rs200542073	CT	C	627.73	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:26,39:0.60:65
chr1	78105067	.	CA	C	52.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.083;ClippingRankSum=0.000;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.42;ReadPosRankSum=-0.636;SOR=0.604;set=HC	GT:AD:AF:DP	0/1:103,24:0.19:127
chr1	78178976	rs6603958	T	A	958.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:73,57:0.44:130
chr1	78179032	rs71075758	AT	A	325.73	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:16,22:0.58:38
chr1	78184325	rs12142671	A	G	906.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:45,45:0.50:90
chr1	78184433	rs1963170	G	A	62.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:5,4:0.44:9
chr1	78200005	rs3767037	T	C	462.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:18,21:0.54:39
chr1	78201745	rs2296227	G	T	2131.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.743;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=3.181;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.61;ReadPosRankSum=0.585;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:95,106:0.53:201
chr1	78206682	rs2274123	A	C	270.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	78206903	rs2274124	C	G	209.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chr1	78281002	rs11162386	T	C	410.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:26,21:0.45:47
chr1	78383467	rs1749913	G	A	941.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:58,47:0.45:105
chr1	78399207	rs4483454	C	G	595.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:15,28:0.65:43
chr1	78408536	rs3767028	C	G	622.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:16,27:0.63:43
chr1	78414310	.	C	CA	82.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.969;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=1.702;MLEAC=1;MLEAF=0.500;MQ=60.36;MQRankSum=1.493;QD=2.85;ReadPosRankSum=-1.004;SOR=1.119;set=HC	GT:AD:AF:DP	0/1:18,11:0.38:29
chr1	78415120	rs201574163	CA	C	149.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.499;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.13;ReadPosRankSum=0.254;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:8,13:0.62:21
chr1	78426284	rs2296454	T	C	215.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:2,9:0.82:11
chr1	78429408	rs2274257	G	C	1642.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:76,76:0.50:152
chr1	78430689	rs11409017	A	AG	17028.73	.	AC=2;AF=1.00;AN=2;DB;DP=487;set=Intersection	GT:AD:AF:DP	1/1:0,475:1.00:475
chr1	78432503	rs3736909	G	C	2201.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.697;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=1.167;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.23;ReadPosRankSum=0.969;SOR=0.605;set=HC	GT:AD:AF:DP	0/1:83,97:0.54:180
chr1	78432506	rs200892659	T	TA	754.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.454;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=3.250;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.240;QD=4.41;ReadPosRankSum=2.039;SOR=0.452;set=HC	GT:AD:AF:DP	0/1:104,67:0.39:171
chr1	78432658	rs5775434	AT	A	766.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.476;ClippingRankSum=0.000;DB;DP=198;ExcessHet=3.0103;FS=2.889;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.73;ReadPosRankSum=3.319;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:96,66:0.41:162
chr1	78435701	rs202224025	TA	T	56.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.322;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=1.009;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.892;QD=0.58;ReadPosRankSum=-0.164;SOR=0.466;set=HC	GT:AD:AF:DP	0/1:79,19:0.19:98
chr1	78471060	rs11384806	T	TC	225.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.587;ClippingRankSum=-0.000;DB;DP=23;ExcessHet=3.0103;FS=3.590;MLEAC=1;MLEAF=0.500;MQ=61.86;MQRankSum=1.817;QD=10.75;ReadPosRankSum=-1.812;SOR=2.215;set=HC	GT:AD:AF:DP	0/1:9,12:0.57:21
chr1	78478675	rs3790586	G	A	731.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:25,32:0.56:57
chr1	78481640	rs1039863	G	A	756.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:37,35:0.49:72
chr1	78601465	rs3838409	C	CT	1375.73	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:76,78:0.51:154
chr1	78958491	rs35227129	C	T	3376.77	.	AC=1;AF=0.500;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	0/1:199,163:0.45:362
chr1	79094593	rs273257	A	G	3336.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr1	79106967	rs11577394	C	T	690.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:38,31:0.45:69
chr1	79115905	rs2070123	T	C	2128.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:178,112:0.39:290
chr1	79124961	rs57140825	G	T	688.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:36,30:0.45:66
chr1	79128320	rs11577395	A	G	361.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:22,18:0.45:40
chr1	79128570	.	G	GT	3228.73	.	AC=1;AF=0.500;AN=2;DP=285;MQ=60.04;set=Intersection	GT:AD:AF:DP	0/1:176,102:0.37:278
chr1	79355596	rs1061728	A	G	884.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:39,42:0.52:81
chr1	79357360	rs2275902	G	C	5006.77	.	AC=1;AF=0.500;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	0/1:148,221:0.60:369
chr1	79358743	rs10640737	C	CA	156.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.447;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=3.110;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.27;ReadPosRankSum=-0.578;SOR=0.298;set=HC	GT:AD:AF:DP	0/1:31,17:0.35:48
chr1	79358827	rs1968956	G	T	1578.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:71,76:0.52:147
chr1	79383458	rs12569007	A	T	1985.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:100,97:0.49:197
chr1	79383748	.	G	GA	356.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.122;ClippingRankSum=0.000;DP=210;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.677;QD=2.14;ReadPosRankSum=-0.968;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:124,43:0.26:167
chr1	79386139	rs41312732	A	G	95.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:7,5:0.42:12
chr1	79387242	rs3811440	C	T	1945.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:76,86:0.53:162
chr1	79392428	rs56828724	T	C	90.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.35;ReadPosRankSum=1.242;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:3,5:0.62:8
chr1	79392446	rs59554507	C	T	186.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:7,9:0.56:16
chr1	79392756	rs12754818	C	A	281.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:18,14:0.44:32
chr1	79401927	rs61770681	A	G	625.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:44,32:0.42:76
chr1	79402199	rs79353007	T	C	120.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:5,5:0.50:10
chr1	79403450	rs3811438	T	C	902.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:47,40:0.46:87
chr1	79403751	rs985277	T	G	826.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:97,45:0.32:142
chr1	79404779	rs7526334	T	A	428.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:26,20:0.43:46
chr1	79411951	rs11162579	G	A	1511.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.547;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=1.187;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.13;ReadPosRankSum=-1.501;SOR=0.570;set=HC	GT:AD:AF:DP	0/1:107,79:0.42:186
chr1	79411968	rs41313381	C	A	2777.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:85,121:0.59:206
chr1	79472141	rs1571992	C	A	3280.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr1	82302600	rs12064537	T	C	940.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:30,41:0.58:71
chr1	82415814	rs9438715	T	C	4283.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:1,152:0.99:153
chr1	82416220	rs2148630	G	A	1189.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	82417552	rs7413275	T	G	1513.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	82421596	rs11163397	C	T	11138.77	.	AC=2;AF=1.00;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	1/1:1,409:1.00:410
chr1	82437670	rs144957268	ATTTGT	A	3552.73	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr1	82437682	rs41292976	G	A	3559.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr1	82456585	rs41292984	G	A	5092.77	.	AC=1;AF=0.500;AN=2;DB;DP=442;set=Intersection	GT:AD:AF:DP	0/1:206,229:0.53:435
chr1	84355734	rs71826512	AAGAACTTCAAGGAT	A	3701.73	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:168,101:0.38:269
chr1	84383079	rs17534614	G	A	748.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:30,32:0.52:62
chr1	84464900	rs151257524	G	A	414.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:10,20:0.67:30
chr1	84640691	rs582201	T	G	2029.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr1	84640834	rs12132002	T	G	367.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:10,18:0.64:28
chr1	84765340	rs10658515	G	GTATA	1536.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.026;ClippingRankSum=0.000;DB;DP=245;ExcessHet=3.0103;FS=2.199;MLEAC=1;MLEAF=0.500;MQ=61.14;MQRankSum=0.601;QD=15.37;ReadPosRankSum=0.736;SOR=1.863;set=HC	GT:AD:AF:DP	0/1:38,62:0.62:100
chr1	84791239	rs315555	T	C	483.78	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:1,18:0.95:19
chr1	84810396	rs315528	A	C	2136.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr1	84810815	rs315527	A	G	19965.77	.	AC=2;AF=1.00;AN=2;DB;DP=776;set=Intersection	GT:AD:AF:DP	1/1:2,764:1.00:766
chr1	84853957	rs665074	A	T	3364.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr1	84876711	rs3216015	C	CA	6388.73	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr1	84876731	rs1506700	T	G	3090.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:1,111:0.99:112
chr1	84878228	rs7511984	C	T	3728.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:2,138:0.99:140
chr1	84946745	rs7413066	C	T	1381.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	84956161	rs11440073	C	CT	4132.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.013;ClippingRankSum=0.000;DB;DP=596;ExcessHet=3.0103;FS=0.523;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=2.390;QD=7.95;ReadPosRankSum=-0.143;SOR=0.771;set=HC	GT:AD:AF:DP	0/1:224,296:0.57:520
chr1	84961063	rs12126099	T	C	571.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:27,27:0.50:54
chr1	84963000	rs1246159	A	G	4478.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:1,171:0.99:172
chr1	84971833	rs11163985	G	C	3988.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:133,188:0.59:321
chr1	84971969	rs13093	G	T	1976.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:61,90:0.60:151
chr1	84981938	rs201206476	C	CA	452.73	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:13,26:0.67:39
chr1	84986213	rs5775789	AT	A	432.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	84991488	rs2292808	T	G	1114.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:105,55:0.34:160
chr1	84998445	rs6690204	C	G	1099.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	84999326	rs78376567	A	G	1049.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:46,46:0.50:92
chr1	84999571	rs10874451	T	C	808.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	85009894	rs12143652	A	G	5588.77	.	AC=1;AF=0.500;AN=2;DB;DP=613;set=Intersection	GT:AD:AF:DP	0/1:333,276:0.45:609
chr1	85014433	.	CTTTTTTTTTTTTTTT	C	1005.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.279;ClippingRankSum=0.000;DP=58;ExcessHet=3.0103;FS=15.678;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.40;ReadPosRankSum=1.365;SOR=1.947;set=HC	GT:AD:AF:DP	0/1:13,34:0.72:47
chr1	85016177	rs1400777	A	G	1867.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr1	85029077	rs15911	C	T	1166.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:73,58:0.44:131
chr1	85031630	rs2994953	G	A	6548.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr1	85035592	rs147024168	C	A	51.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:3,3:0.50:6
chr1	85036239	rs2303306	C	G	7915.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr1	85039828	rs41299545	G	A	11708.77	.	AC=2;AF=1.00;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	1/1:0,425:1.00:425
chr1	85039955	rs2303307	G	A	10123.77	.	AC=2;AF=1.00;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	1/1:0,370:1.00:370
chr1	85039998	rs142534762	CGCAGCGCCA	C	6920.73	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr1	85040069	rs2911592	G	A	3829.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.19;QD=34.19;SOR=2.712;set=HC	GT:AD:AF:DP	1/1:0,112:1.00:112
chr1	85040069	.	GC	AA,AC	566	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.41;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=328;MMLQ=24;MQ=60.24;NF=1,9;NR=24,72;PP=566,557;QD=24.7787149945;SC=TAGAGACGAGGCGCCAGCGTC;SbPval=0.94;Source=Platypus;TC=81;TCF=9;TCR=72;TR=25,81;WE=85040078;WS=85040059;set=Platypus	GT:AF:DP	0/1:0.31:81
chr1	85040070	rs115347546	C	A	852.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=5.349;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=6.565;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=1.969;QD=7.75;ReadPosRankSum=0.415;SOR=1.463;set=HC	GT:AD:AF:DP	0/1:72,38:0.35:110
chr1	85113203	rs2994949	T	C	10099.77	.	AC=2;AF=1.00;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	1/1:0,387:1.00:387
chr1	85113229	rs1057746	A	G	9459.77	.	AC=2;AF=1.00;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	1/1:0,369:1.00:369
chr1	85121255	rs4537578	A	G	7377.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr1	85128262	rs2911563	A	G	5575.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr1	85128280	rs2994437	T	C	4288.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr1	85128305	rs11164033	G	C	3061.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr1	85131641	rs2911566	G	C	840.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	85131982	rs3096445	T	G	2902.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:1,94:0.99:95
chr1	85331808	rs146269415	G	GAGA	5579.73	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:117,144:0.55:261
chr1	85397286	rs34793286	G	C	4506.77	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:129,192:0.60:321
chr1	85412989	rs150462929	CCA	C	145.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.114;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=1.585;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.47;ReadPosRankSum=0.262;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:31,11:0.26:42
chr1	85418307	rs677476	C	G	3929.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr1	85422061	rs632545	C	T	11180.77	.	AC=2;AF=1.00;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	1/1:0,404:1.00:404
chr1	85424182	rs673998	A	G	1117.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:33,50:0.60:83
chr1	85424479	rs674182	A	G	85.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.196;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=3.424;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.80;ReadPosRankSum=-1.606;SOR=0.120;set=HC	GT:AD:AF:DP	0/1:6,5:0.45:11
chr1	85462582	rs11161503	C	G	3268.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr1	85462652	rs11161504	G	T	1237.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr1	85462665	rs11161505	T	G	1118.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	85488030	rs2028304	G	A	3343.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:176,162:0.48:338
chr1	85488154	rs2039814	G	C	1870.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr1	85511057	rs199625574	AAAC	A	2104.73	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:53,56:0.51:109
chr1	85537502	rs4907131	T	A	738.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	85537522	rs4907132	T	C	1111.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	85538603	.	C	A	175	.	AC=1;AF=0.500;AN=2;BRF=0.39;FR=0.5000;HP=2;HapScore=2;MGOF=27;MMLQ=27;MQ=59.03;NF=9;NR=1;PP=175;QD=20.9771212547;SC=GCGCCACTGCCCTCCAGCCTG;SbPval=0.68;Source=Platypus;TC=18;TCF=16;TCR=2;TR=10;WE=85538611;WS=85538593;set=Platypus	GT:AD:AF:DP	1/0:8,10:0.56:18
chr1	85538655	rs28417745	A	G	360.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=65.30;QD=18.99;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	85547945	rs7534574	T	C	1330.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	85550156	rs146215625	A	AAT	476.73	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:5,17:0.77:22
chr1	85551468	rs111823967	A	ATCAGTTTTTCT	1536.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	85555672	rs1417351	A	C	976.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	85559118	rs11304107	CT	C	7824.73	.	AC=2;AF=1.00;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	1/1:0,333:1.00:333
chr1	85559452	rs709762	A	G	19175.77	.	AC=2;AF=1.00;AN=2;DB;DP=725;set=Intersection	GT:AD:AF:DP	1/1:0,720:1.00:720
chr1	85560313	rs709765	T	C	1499.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:1,55:0.98:56
chr1	85561546	rs709766	T	C	3533.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr1	85564138	rs817489	A	G	1773.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr1	85573705	rs11427716	A	AC	5871.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.019;ClippingRankSum=0.000;DB;DP=250;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.56;MQRankSum=0.335;QD=24.26;ReadPosRankSum=-0.095;SOR=0.831;set=HC	GT:AD:AF:DP	1/1:3,239:0.99:242
chr1	85574021	rs709759	G	A	1812.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr1	85575838	rs376334573	TA	T	602.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.402;ClippingRankSum=0.000;DB;DP=404;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=3.121;QD=1.80;ReadPosRankSum=0.786;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:242,93:0.28:335
chr1	85589939	rs11356964	GT	G	12454.73	.	AC=2;AF=1.00;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	1/1:2,346:0.99:348
chr1	85592126	rs817474	G	T	1266.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	85595645	rs1020770	C	T	9077.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:0,339:1.00:339
chr1	85598527	rs36118758	TC	T	5926.73	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr1	85624549	rs709786	C	T	5388.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr1	85624864	rs817412	G	A	12665.77	.	AC=2;AF=1.00;AN=2;DB;DP=473;set=Intersection	GT:AD:AF:DP	1/1:0,464:1.00:464
chr1	85647713	rs817444	T	C	852.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	85648620	rs817443	C	T	4969.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr1	85648905	rs11161539	T	C	3115.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr1	85723318	rs17382844	A	G	1049.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:42,45:0.52:87
chr1	85741921	rs2735594	G	C	4569.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr1	85741968	rs12562182	G	C	1552.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:136,84:0.38:220
chr1	85742157	rs1060843	G	C	290.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:17,12:0.41:29
chr1	85787114	rs233116	A	T	3398.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.32;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr1	85787118	rs3087894	G	C	3441.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.02;SOR=1.730;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr1	85787323	rs1498375	T	A	2632.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr1	85787334	rs1498374	C	T	2261.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr1	85790633	rs1498373	G	A	2243.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr1	85816134	rs2230820	T	C	5837.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:1,222:1.00:223
chr1	85817295	rs2076699	G	A	12779.77	.	AC=2;AF=1.00;AN=2;DB;DP=487;set=Intersection	GT:AD:AF:DP	1/1:3,472:0.99:475
chr1	85930272	rs4001153	GAC	G	3244.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.110;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.42;MQRankSum=0.393;QD=30.32;ReadPosRankSum=0.698;SOR=0.422;set=HC	GT:AD:AF:DP	1/1:3,104:0.97:107
chr1	85930293	.	ACT	A	1480	.	AC=1;AF=0.500;AN=2;BRF=0.32;FR=0.5000;HP=2;HapScore=1;MGOF=38;MMLQ=24;MQ=60.5;NF=29;NR=77;PP=1480;QD=14.0094339623;SC=ACACACACACACTCGCCCCCC;SbPval=0.82;Source=Platypus;TC=130;TCF=44;TCR=86;TR=106;WE=85930302;WS=85930283;set=Platypus	GT:AD:AF:DP	1/0:24,106:0.82:130
chr1	86047311	rs9658584	G	C	886.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:59,44:0.43:103
chr1	86119898	rs2274738	A	G	642.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:41,32:0.44:73
chr1	86144477	.	G	GA	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.791;ClippingRankSum=0.000;DP=64;ExcessHet=3.0103;FS=1.406;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.70;ReadPosRankSum=1.354;SOR=0.420;set=HC	GT:AD:AF:DP	0/1:45,10:0.18:55
chr1	86146672	rs3767162	G	A	870.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:19,37:0.66:56
chr1	86167760	rs185530889	A	G	409.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:10,17:0.63:27
chr1	86167957	rs1764298	C	T	1772.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.07;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr1	86173298	rs1539444	C	T	3886.77	.	AC=1;AF=0.500;AN=2;DB;DP=495;set=Intersection	GT:AD:AF:DP	0/1:295,195:0.40:490
chr1	86200509	rs143597403	C	T	4012.77	.	AC=1;AF=0.500;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	0/1:183,191:0.51:374
chr1	86202016	rs1481200	C	T	12226.77	.	AC=2;AF=1.00;AN=2;DB;DP=467;set=Intersection	GT:AD:AF:DP	1/1:1,462:1.00:463
chr1	86210241	rs11387251	G	GT	1763.73	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr1	86210546	rs7547023	G	A	3603.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr1	86211325	rs10747324	G	A	1337.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	86246849	rs313722	A	C	4225.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:1,156:0.99:157
chr1	86246998	.	T	TA	278.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.669;ClippingRankSum=0.000;DP=159;ExcessHet=3.0103;FS=1.615;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.99;ReadPosRankSum=-1.749;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:106,34:0.24:140
chr1	86249063	rs313724	C	T	4583.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr1	86249911	rs313725	A	G	7292.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr1	86252025	rs12746325	A	G	2549.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr1	86308225	rs1010058	C	A	70.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	86340193	rs11161696	G	T	659.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	86340262	rs12136023	C	A	2296.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr1	86340523	rs1564518	TG	CA	736.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	86340794	rs1564516	T	C	828.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	86340880	rs1564515	A	G	4230.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr1	86341153	rs12122234	G	A	1094.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	86355414	.	CT	C	170.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.463;ClippingRankSum=0.000;DP=229;ExcessHet=3.0103;FS=3.904;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=2.838;QD=0.95;ReadPosRankSum=-1.030;SOR=1.117;set=HC	GT:AD:AF:DP	0/1:137,43:0.24:180
chr1	86361802	rs7541806	C	G	2045.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr1	86362184	rs35593147	A	AT	460.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=15.89;ReadPosRankSum=0.282;SOR=0.346;set=HC	GT:AD:AF:DP	1/1:3,26:0.90:29
chr1	86375654	rs1502657	C	G	14741.77	.	AC=2;AF=1.00;AN=2;DB;DP=554;set=Intersection	GT:AD:AF:DP	1/1:0,546:1.00:546
chr1	86453237	rs11799965	T	G	3639.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr1	86482728	rs113284571	T	C	574.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:15,23:0.61:38
chr1	86487914	rs11161721	C	A	3330.77	.	AC=1;AF=0.500;AN=2;DB;DP=423;MQ=60.18;set=Intersection	GT:AD:AF:DP	0/1:253,169:0.40:422
chr1	86487981	rs516213	G	A	6316.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr1	86487992	rs5775882	A	AACAG	7225.73	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr1	86497769	rs582141	C	G	696.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	86512433	rs41309161	C	T	1376.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:51,65:0.56:116
chr1	86524903	rs41309191	C	T	1927.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.345;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=4.263;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.48;ReadPosRankSum=-0.513;SOR=0.421;set=HC	GT:AD:AF:DP	0/1:54,89:0.62:143
chr1	86529390	rs12742014	G	A	3624.77	.	AC=1;AF=0.500;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	0/1:208,183:0.47:391
chr1	86554813	rs56934354	G	GA	1549.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.642;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=3.877;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.02;ReadPosRankSum=1.837;SOR=0.259;set=HC	GT:AD:AF:DP	1/1:6,80:0.93:86
chr1	86554821	rs12405791	G	A	4032.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.15;SOR=1.298;set=HC	GT:AD:AF:DP	1/1:0,98:1.00:98
chr1	86557967	rs11161732	G	A	763.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:40,38:0.49:78
chr1	86590509	.	T	TA	104.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.034;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;FS=1.616;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=1.529;QD=2.76;ReadPosRankSum=0.943;SOR=0.382;set=HC	GT:AD:AF:DP	0/1:26,12:0.32:38
chr1	86590915	rs2174767	G	A	10788.77	.	AC=2;AF=1.00;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	1/1:0,395:1.00:395
chr1	86591837	rs11161747	G	A	11943.77	.	AC=2;AF=1.00;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	1/1:0,433:1.00:433
chr1	86621992	rs1999747	C	A	2746.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr1	86814688	rs272491	C	T	185.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:7,9:0.56:16
chr1	86818572	rs272496	T	C	4290.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr1	86820267	rs1182098	C	T	8246.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr1	86821194	rs10676142	A	ACT	907.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	86821910	rs68126437	CTAAAA	C	76.73	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:4,3:0.43:7
chr1	86838158	rs421105	C	T	1399.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.56;SOR=0.728;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	86847955	rs272516	G	A	1065.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.206;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=0.730;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.87;ReadPosRankSum=-0.190;SOR=0.802;set=HC	GT:AD:AF:DP	0/1:56,52:0.48:108
chr1	86850624	rs2273941	T	G	42.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.016;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.75;ReadPosRankSum=1.383;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:6,3:0.33:9
chr1	86852621	rs2390096	A	G	580.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:56,33:0.37:89
chr1	86890931	rs1158505	T	A	178.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:11,9:0.45:20
chr1	86891005	rs1158506	C	A	558.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.208;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.80;ReadPosRankSum=-1.409;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:29,28:0.49:57
chr1	86891179	rs2210641	T	C	911.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:44,44:0.50:88
chr1	86896354	rs4292929	G	A	585.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:23,24:0.51:47
chr1	86896541	rs3737672	G	A	3130.77	.	AC=1;AF=0.500;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	0/1:181,159:0.47:340
chr1	86897973	rs1334150	T	C	441.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:20,20:0.50:40
chr1	86898315	rs3737159	T	C	2386.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:88,104:0.54:192
chr1	86919011	rs3820041	G	A	703.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:28,34:0.55:62
chr1	86939130	rs2145412	C	T	4207.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr1	86939390	rs2180762	G	A	5360.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr1	86952324	rs2734705	A	G	5835.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr1	86954591	rs2075632	T	C	2527.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:78,111:0.59:189
chr1	86956772	rs2753341	G	A	300.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:7,12:0.63:19
chr1	86956785	rs2753342	C	G	657.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	86959173	rs2791494	T	C	6233.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr1	86959796	rs1321689	C	T	4252.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr1	86965419	rs1882753	T	C	1982.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:135,96:0.42:231
chr1	87036746	rs772599	C	A	9959.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	1/1:0,375:1.00:375
chr1	87045896	rs4001061	TCCTACA	T	26768.73	.	AC=2;AF=1.00;AN=2;DB;DP=669;set=Intersection	GT:AD:AF:DP	1/1:3,609:1.00:612
chr1	87101245	rs2292831	A	G	674.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:28,29:0.51:57
chr1	87101375	rs2292830	C	G	1859.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:114,90:0.44:204
chr1	87102593	rs41286592	T	C	3360.77	.	AC=1;AF=0.500;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	0/1:220,164:0.43:384
chr1	87458695	rs10873810	G	A	3523.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr1	87538182	rs34124612	TTG	T	5612.73	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr1	87538200	rs10782592	G	A	5727.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr1	87549858	rs2798675	A	G	1238.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:1,46:0.98:47
chr1	87558066	rs66709085	CCACATA	C	851.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	87563668	rs1199677	G	A	1312.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	87570398	rs1621247	G	A	8617.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr1	87598117	rs6686259	T	G	8262.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr1	87599697	rs6576865	G	A	9095.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:0,342:1.00:342
chr1	87633761	rs10782593	C	T	1830.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr1	89225976	rs430600	T	C	1405.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:96,72:0.43:168
chr1	89236029	rs7541301	T	A	2604.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:152,134:0.47:286
chr1	89250481	rs201679232	ATCT	A	3057.73	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:116,82:0.41:198
chr1	89271574	rs786906	T	C	3366.77	.	AC=1;AF=0.500;AN=2;DB;DP=442;set=Intersection	GT:AD:AF:DP	0/1:251,180:0.42:431
chr1	89280965	rs786918	A	G	522.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:67,32:0.32:99
chr1	89287596	.	ACTC	A	645.73	.	AC=1;AF=0.500;AN=2;DP=87;set=Intersection	GT:AD:AF:DP	0/1:66,21:0.24:87
chr1	89322982	rs2794318	G	A	11138.77	.	AC=2;AF=1.00;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	1/1:0,409:1.00:409
chr1	89357092	rs12748743	C	T	4158.77	.	AC=1;AF=0.500;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	0/1:172,177:0.51:349
chr1	89426902	rs3738055	G	A	4471.77	.	AC=1;AF=0.500;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	0/1:161,209:0.56:370
chr1	89427252	rs10922530	G	A	274.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:17,12:0.41:29
chr1	89430420	rs1536259	A	G	903.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.235;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=3.137;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.59;ReadPosRankSum=-1.950;SOR=0.409;set=HC	GT:AD:AF:DP	0/1:34,44:0.56:78
chr1	89474818	rs17433780	A	G	1007.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:90,53:0.37:143
chr1	89475135	rs10493821	C	T	3321.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:125,159:0.56:284
chr1	89475230	rs4142706	T	G	5658.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:1,209:1.00:210
chr1	89477830	rs6659829	T	C	950.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	89478854	rs4656076	C	G	615.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:19,23:0.55:42
chr1	89479758	rs3795543	T	C	4481.77	.	AC=1;AF=0.500;AN=2;DB;DP=556;set=Intersection	GT:AD:AF:DP	0/1:325,229:0.41:554
chr1	89486037	rs7555039	C	T	1277.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:85,59:0.41:144
chr1	89520574	rs10922554	C	A	3334.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.498;ClippingRankSum=0.000;DB;DP=326;ExcessHet=3.0103;FS=0.864;MLEAC=1;MLEAF=0.500;MQ=59.65;MQRankSum=-2.012;QD=10.52;ReadPosRankSum=-1.286;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:165,152:0.48:317
chr1	89520636	rs10922555	G	A	2555.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.406;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.66;MQRankSum=-1.268;QD=19.51;ReadPosRankSum=1.214;SOR=0.764;set=HC	GT:AD:AF:DP	0/1:62,69:0.53:131
chr1	89520643	rs10922556	C	T	2584.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.150;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=1.673;MLEAC=1;MLEAF=0.500;MQ=57.04;MQRankSum=-1.585;QD=21.54;ReadPosRankSum=0.303;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:54,66:0.55:120
chr1	89520658	rs55880826	C	T	1259.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:44,52:0.54:96
chr1	89521841	rs1048443	G	C	4216.77	.	AC=1;AF=0.500;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	0/1:216,190:0.47:406
chr1	89522646	rs1048425	G	C	3769.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:161,161:0.50:322
chr1	89523927	rs60070945	C	T	640.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:51,33:0.39:84
chr1	89525219	.	C	CT	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.404;ClippingRankSum=0.000;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.95;ReadPosRankSum=-2.549;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:32,11:0.26:43
chr1	89525812	rs6701673	C	G	557.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.242;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.87;ReadPosRankSum=-1.328;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:32,15:0.32:47
chr1	89525820	rs61798936	C	T	612.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.273;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.21;ReadPosRankSum=-0.867;SOR=0.532;set=HC	GT:AD:AF:DP	0/1:39,21:0.35:60
chr1	89525966	rs1048401	T	C	2919.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:111,132:0.54:243
chr1	89574026	rs1329119	G	A	1157.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:31,49:0.61:80
chr1	89575677	rs2026043	T	C	445.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:13,17:0.57:30
chr1	89579941	rs2230338	T	C	6573.77	.	AC=1;AF=0.500;AN=2;DB;DP=643;set=Intersection	GT:AD:AF:DP	0/1:312,324:0.51:636
chr1	89582690	rs1803632	G	C	2563.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:82,111:0.58:193
chr1	89583544	rs2209956	T	C	459.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:20,17:0.46:37
chr1	89597755	rs942442	T	C	317.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:8,13:0.62:21
chr1	89607479	rs6666846	G	T	2236.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.758;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=0.805;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.52;ReadPosRankSum=-0.361;SOR=0.574;set=HC	GT:AD:AF:DP	0/1:50,59:0.54:109
chr1	89607486	rs6658235	T	C	2147.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.909;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=0.829;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.65;ReadPosRankSum=-0.359;SOR=0.808;set=HC	GT:AD:AF:DP	0/1:48,56:0.54:104
chr1	89615979	rs586609	C	T	1330.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:41,55:0.57:96
chr1	89618472	rs10710842	GA	G	269.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.663;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=1.054;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=1.482;QD=4.65;ReadPosRankSum=-0.258;SOR=0.509;set=HC	GT:AD:AF:DP	0/1:32,26:0.45:58
chr1	89637578	rs676913	G	A	7784.77	.	AC=1;AF=0.500;AN=2;DB;DP=664;set=Intersection	GT:AD:AF:DP	0/1:289,370:0.56:659
chr1	89652846	rs12129014	G	A	2254.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:114,112:0.50:226
chr1	89661228	rs650448	T	G	511.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:17,20:0.54:37
chr1	89732535	rs150724949	AAT	A	52.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.581;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=9.778;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.55;ReadPosRankSum=-0.884;SOR=0.023;set=HC	GT:AD:AF:DP	0/1:29,5:0.15:34
chr1	89845926	rs11361992	GT	G	8926.73	.	AC=2;AF=1.00;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	1/1:2,415:1.00:417
chr1	89847372	rs4658359	G	T	12638.77	.	AC=2;AF=1.00;AN=2;DB;DP=470;set=Intersection	GT:AD:AF:DP	1/1:0,465:1.00:465
chr1	89847411	rs4658360	C	T	11062.77	.	AC=2;AF=1.00;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	1/1:0,428:1.00:428
chr1	89847444	rs4658146	A	G	10525.77	.	AC=2;AF=1.00;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	1/1:0,390:1.00:390
chr1	89849201	rs928652	C	G	1664.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	89849350	rs928653	G	A	2037.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr1	89849441	rs928654	T	G	958.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	89849574	rs928655	G	A	998.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	89849742	rs959460	A	T	3097.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr1	89851100	rs369061637	G	GT	999.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.440;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.54;ReadPosRankSum=1.310;SOR=0.853;set=HC	GT:AD:AF:DP	1/1:4,53:0.93:57
chr1	89885854	rs6673154	G	A	3003.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr1	89888530	rs4261099	C	T	7782.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr1	89888552	rs4282800	T	A	10595.77	.	AC=2;AF=1.00;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	1/1:0,382:1.00:382
chr1	89888585	rs4415545	C	G	26193.77	.	AC=2;AF=1.00;AN=2;DB;DP=584;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.12;QD=45.08;SOR=0.951;set=HC	GT:AD:AF:DP	1/1:0,581:1.00:581
chr1	89888588	rs4506445	G	T	26432.77	.	AC=2;AF=1.00;AN=2;DB;DP=600;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.28;QD=44.35;SOR=0.947;set=HC	GT:AD:AF:DP	1/1:0,596:1.00:596
chr1	90058242	rs34096201	G	GT	68.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.029;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=0.968;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.64;ReadPosRankSum=0.878;SOR=0.480;set=HC	GT:AD:AF:DP	0/1:86,21:0.20:107
chr1	90171835	rs6657969	C	T	4485.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr1	90178743	rs474536	A	G	11296.77	.	AC=2;AF=1.00;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	1/1:1,393:1.00:394
chr1	90179532	rs12032393	A	G	8074.77	.	AC=1;AF=0.500;AN=2;DB;DP=722;set=Intersection	GT:AD:AF:DP	0/1:344,369:0.52:713
chr1	90470915	rs11808927	T	A	634.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:17,24:0.59:41
chr1	90482803	rs41296161	A	G	313.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:9,12:0.57:21
chr1	90486412	rs2816881	T	G	2926.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:119,141:0.54:260
chr1	90493026	rs10922744	G	A	1788.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:89,85:0.49:174
chr1	91402917	rs143274609	T	TA	43.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.104;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.68;ReadPosRankSum=-0.468;SOR=0.358;set=HC	GT:AD:AF:DP	0/1:19,7:0.27:26
chr1	91447985	rs358691	C	T	3058.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr1	91728053	rs585898	G	A	3768.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr1	91728202	rs555432	T	C	894.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	91739208	rs281964	C	T	756.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	91739414	rs281963	G	A	1065.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	91740542	rs11369914	A	AT	173.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.731;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.72;MQRankSum=0.577;QD=10.86;ReadPosRankSum=0.873;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:4,12:0.75:16
chr1	91781304	rs281991	T	C	731.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	91781413	rs281992	T	G	2955.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr1	91782117	.	T	TA	42.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.939;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;FS=1.922;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.26;ReadPosRankSum=-0.401;SOR=0.235;set=HC	GT:AD:AF:DP	0/1:25,9:0.26:34
chr1	91793877	rs281972	T	C	2283.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr1	91813184	rs281936	C	T	1045.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	91818302	rs41286785	A	G	252.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:15,12:0.44:27
chr1	91841301	rs282036	T	C	3848.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr1	91846374	rs282033	C	A	653.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	91846595	rs5776097	T	TA	696.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	91846654	rs282032	A	T	238.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	91851193	rs12144808	G	A	1575.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:59,72:0.55:131
chr1	91851253	rs282026	T	C	3686.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr1	91859795	rs282009	T	C	5386.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr1	91870410	rs17131429	G	C	24176.77	.	AC=2;AF=1.00;AN=2;DB;DP=913;set=Intersection	GT:AD:AF:DP	1/1:4,900:1.00:904
chr1	91973557	rs553606	T	G	2223.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr1	91974034	rs1876264	G	A	702.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:31,28:0.47:59
chr1	91978963	rs13447511	T	TAA	467.73	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:12,17:0.59:29
chr1	91980447	rs483532	A	G	11811.77	.	AC=2;AF=1.00;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	1/1:2,458:1.00:460
chr1	91980649	rs10874758	G	A	1357.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:79,61:0.44:140
chr1	91989572	rs488126	T	G	5980.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr1	92108274	.	TA	T	178.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.080;ClippingRankSum=0.000;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.41;ReadPosRankSum=0.950;SOR=0.623;set=HC	GT:AD:AF:DP	0/1:96,31:0.24:127
chr1	92108899	rs2493202	C	T	9805.77	.	AC=1;AF=0.500;AN=2;DB;DP=897;set=Intersection	GT:AD:AF:DP	0/1:418,466:0.53:884
chr1	92149277	rs1131243	C	T	639.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:31,32:0.51:63
chr1	92163786	rs2296621	G	T	366.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:9,14:0.61:23
chr1	92174260	rs284878	A	G	9364.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:0,337:1.00:337
chr1	92177938	rs1805113	A	G	10539.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	1/1:0,380:1.00:380
chr1	92184814	rs7524066	G	T	1925.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:125,96:0.43:221
chr1	92185657	rs1805112	C	T	1390.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:60,64:0.52:124
chr1	92200593	rs11165376	A	G	2715.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:100,120:0.55:220
chr1	92200597	rs12124904	G	A	2233.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:113,96:0.46:209
chr1	92200627	rs10874913	T	C	3916.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.06;SOR=3.086;set=HC	GT:AD:AF:DP	1/1:0,115:1.00:115
chr1	92200627	.	TGTTATAC	CGTTATAC,CGTTATAT	943	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.36;FR=0.5000,0.5000;HP=2;HapScore=2;MGOF=25;MMLQ=24;MQ=60.0;NF=12,4;NR=85,34;PP=943,667;QD=10.0801155933;SC=CTCTTCCCTTTGTTATACAAG;SbPval=0.53;Source=Platypus;TC=97;TCF=12;TCR=85;TR=97,38;WE=92200642;WS=92200617;set=Platypus	GT:AF:DP	0/1:1.00:97
chr1	92200634	rs11165377	C	T	1066.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.788;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.00;ReadPosRankSum=0.236;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:51,46:0.47:97
chr1	92224067	rs3738441	C	T	1942.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:82,91:0.53:173
chr1	92252015	rs6658144	G	A	257.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:17,12:0.41:29
chr1	92262874	rs2810904	T	C	2499.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:70,112:0.62:182
chr1	92428495	rs10783071	C	A	1784.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:117,92:0.44:209
chr1	92430435	.	CGT	C	117.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.089;ClippingRankSum=0.000;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.36;ReadPosRankSum=-1.055;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:10,6:0.38:16
chr1	92442695	rs1156281	A	C	1791.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:60,80:0.57:140
chr1	92446398	rs2303967	T	A	1477.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:93,72:0.44:165
chr1	92447004	rs10875104	A	G	784.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:21,31:0.60:52
chr1	92457843	rs10747493	C	T	767.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:28,36:0.56:64
chr1	92508281	.	CA	C	75.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.230;ClippingRankSum=0.000;DP=65;ExcessHet=3.0103;FS=2.695;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.43;ReadPosRankSum=-1.520;SOR=1.936;set=HC	GT:AD:AF:DP	0/1:36,17:0.32:53
chr1	92568263	rs527412	A	G	1696.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr1	92573670	rs11166163	G	A	2251.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:85,98:0.54:183
chr1	92646021	rs1483022	G	A	7892.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr1	92647223	rs560389	A	G	4736.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr1	92647532	rs565156	C	A	5280.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr1	92649335	rs569593	A	G	501.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.41;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	92711067	rs3131827	A	T	1694.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr1	92712266	rs974924	C	T	1939.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr1	92712598	rs35752451	GAA	G	8299.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.818;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.22;MQRankSum=0.183;QD=43.68;ReadPosRankSum=1.268;SOR=0.305;set=HC	GT:AD:AF:DP	1/1:1,189:0.99:190
chr1	92735359	rs1487540	T	C	2436.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr1	92755943	rs3103178	G	A	627.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	92763091	rs372630078	CA	C	203.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.307;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.67;ReadPosRankSum=0.901;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:88,34:0.28:122
chr1	92764828	rs10875348	T	A	3092.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr1	92765848	rs1542685	A	T	3103.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.771;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.65;ReadPosRankSum=1.689;SOR=1.059;set=HC	GT:AD:AF:DP	1/1:2,119:0.98:121
chr1	92799151	rs1487537	C	T	674.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	92852504	rs10747411	A	G	1599.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:2,63:0.97:65
chr1	92944314	rs72390746	CAG	C,CAGAGAGAG	974.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.12;MQRankSum=0.441;QD=20.74;ReadPosRankSum=-1.868;SOR=1.225;set=HC	GT:AD:AF:DP	1/2:5,28,14:0.60,0.30:47
chr1	92946479	rs11164605	G	A	3059.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr1	92979090	.	ATATATATATATATATATATATATATATATATATG	A	96.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.313;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.84;ReadPosRankSum=-0.490;SOR=1.284;set=HC	GT:AD:AF:DP	0/1:14,6:0.30:20
chr1	92979092	rs146230362	ATATATATATATATATATATATATATATATATG	A	279.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.217;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.54;ReadPosRankSum=1.082;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:6,12:0.67:18
chr1	92979354	rs6603979	A	G	10945.77	.	AC=2;AF=1.00;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	1/1:4,403:0.99:407
chr1	93029453	rs6656432	A	G	1066.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	93071048	rs2050597	G	T	5493.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr1	93089823	rs7514716	T	C	6504.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr1	93128854	rs10747450	A	G	1074.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	93160902	rs2391199	T	C	8385.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr1	93163385	rs7418336	A	G	3047.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr1	93163633	rs1017008	C	T	644.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	93167610	rs10218567	C	T	691.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	93167854	rs10218670	A	G	2587.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr1	93297630	rs145634330	A	C	4653.77	.	AC=1;AF=0.500;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	0/1:201,218:0.52:419
chr1	93306317	rs10874744	G	A	7640.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr1	93426866	rs945629	T	C	5474.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.01;SOR=1.512;set=HC	GT:AD:AF:DP	1/1:0,119:1.00:119
chr1	93426869	rs1415069	G	C	5499.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.31;SOR=1.448;set=HC	GT:AD:AF:DP	1/1:0,127:1.00:127
chr1	93545157	rs2815419	G	A	3472.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.78;SOR=0.920;set=HC	GT:AD:AF:DP	1/1:0,125:1.00:125
chr1	93580581	rs2815427	G	C	5101.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr1	93580992	rs566843	C	T	3142.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr1	93581024	rs2295423	T	C	6281.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr1	93583818	rs34049352	CT	C	202.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.512;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.54;ReadPosRankSum=-1.755;SOR=1.230;set=HC	GT:AD:AF:DP	0/1:10,21:0.68:31
chr1	93602194	rs2281524	C	T	6781.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr1	93620393	rs1060622	G	A	17126.77	.	AC=2;AF=1.00;AN=2;DB;DP=665;set=Intersection	GT:AD:AF:DP	1/1:0,647:1.00:647
chr1	93621483	rs1057257	A	G	734.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	93646207	rs2297707	T	C	11979.77	.	AC=2;AF=1.00;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	1/1:2,421:1.00:423
chr1	93646418	rs10874763	C	T	7568.77	.	AC=1;AF=0.500;AN=2;DB;DP=655;set=Intersection	GT:AD:AF:DP	0/1:285,364:0.56:649
chr1	93649732	rs6682670	A	G	4638.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr1	93659350	rs2815411	A	T	1053.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.34;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	93672723	rs2815413	A	C	3081.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr1	93676314	rs555161	A	G	1383.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.75;SOR=1.666;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	93676314	.	ATCTCATT	GTCTCATA,GTCTCATT	333	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.45;FR=0.5000,0.5000;HP=1;HapScore=3;MGOF=2;MMLQ=24;MQ=60.0;NF=6,20;NR=2,8;PP=146,333;QD=24.9334843578;SC=AAGCAAATGCATCTCATTTAC;SbPval=0.75;Source=Platypus;TC=29;TCF=20;TCR=9;TR=8,28;WE=93676329;WS=93676304;set=Platypus	GT:AF:DP	0/1:0.28:29
chr1	93676321	.	T	A	423.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.179;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.21;ReadPosRankSum=0.238;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:25,21:0.46:46
chr1	93676578	rs797676	A	G	1197.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	93687528	.	CT	C	83.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.752;ClippingRankSum=0.000;DP=42;ExcessHet=3.0103;FS=1.391;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.39;ReadPosRankSum=-0.174;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:23,12:0.34:35
chr1	93692081	.	A	AAT	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;ClippingRankSum=-0.000;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.77;ReadPosRankSum=2.638;SOR=0.169;set=HC	GT:AD:AF:DP	0/1:7,3:0.30:10
chr1	93711782	rs3754186	T	A	7498.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr1	93998640	rs34814765	AT	A	4233.73	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr1	94009524	.	C	CT	43.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.992;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=5.736;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.62;ReadPosRankSum=-0.686;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:57,13:0.19:70
chr1	94012287	rs237425	G	A	1314.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	94041787	rs25569	G	GAC	5254.73	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr1	94312482	rs5776191	T	TC	37710.73	.	AC=2;AF=1.00;AN=2;DB;DP=1041;set=Intersection	GT:AD:AF:DP	1/1:0,1032:1.00:1032
chr1	94312528	rs147446599	G	GC	31202.73	.	AC=2;AF=1.00;AN=2;DB;DP=893;set=Intersection	GT:AD:AF:DP	1/1:0,715:1.00:715
chr1	94312533	rs202198870	G	GC	17508.73	.	AC=2;AF=1.00;AN=2;DB;DP=649;set=Intersection	GT:AD:AF:DP	1/1:2,632:1.00:634
chr1	94312542	.	G	GC	27097.73	.	AC=2;AF=1.00;AN=2;DP=570;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.15;QD=47.54;SOR=1.748;set=HC	GT:AD:AF:DP	1/1:0,570:1.00:570
chr1	94312543	.	C	CCG	2971	.	AC=2;AF=1.00;AN=2;BRF=0.63;FR=1.0000;HP=2;HapScore=1;MGOF=51;MMLQ=24;MQ=59.93;NF=29;NR=110;PP=2971;QD=20;SC=GCGGCGCTCGCGCGCAGGTCC;SbPval=0.52;Source=Platypus;TC=139;TCF=29;TCR=110;TR=139;WE=94312592;WS=94312518;set=Platypus	GT:AD:AF:DP	1/1:0,139:1.00:139
chr1	94312544	.	G	C	2962	.	AC=2;AF=1.00;AN=2;BRF=0.63;FR=1.0000;HP=2;HapScore=1;MGOF=51;MMLQ=24;MQ=59.95;NF=71;NR=109;PP=2962;QD=20;SC=CGGCGCTCGCGCGCAGGTCCA;SbPval=0.07;Source=Platypus;TC=257;TCF=75;TCR=182;TR=180;WE=94312592;WS=94312518;set=Platypus	GT:AD:AF:DP	1/1:77,180:0.70:257
chr1	94312544	.	G	GC	25792.73	.	AC=2;AF=1.00;AN=2;DP=551;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.16;QD=46.81;SOR=1.748;set=HC	GT:AD:AF:DP	1/1:0,551:1.00:551
chr1	94312554	.	A	AG	23047.73	.	AC=2;AF=1.00;AN=2;DP=495;set=Intersection	GT:AD:AF:DP	1/1:0,495:1.00:495
chr1	94312558	.	G	GC	8697.73	.	AC=1;AF=0.500;ALERT;AN=2;DP=478;set=Intersection	GT:AD:AF:DP	0/1:207,237:0.53:444
chr1	94312559	.	CGGCTGGGTCGGGCG	C	7334.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=6.088;ClippingRankSum=0.000;DP=480;ExcessHet=3.0103;FS=1.950;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=-1.453;QD=16.34;ReadPosRankSum=0.592;SOR=0.531;set=HC	GT:AD:AF:DP	0/1:242,207:0.46:449
chr1	94312566	rs2391318	G	T	8784.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=4.239;ClippingRankSum=0.000;DB;DP=461;ExcessHet=3.0103;FS=1.222;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.238;QD=20.15;ReadPosRankSum=-1.641;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:207,229:0.53:436
chr1	94312567	rs2391319	T	C	8581.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=7.744;ClippingRankSum=0.000;DB;DP=460;ExcessHet=3.0103;FS=1.222;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.243;QD=19.73;ReadPosRankSum=-1.865;SOR=0.840;set=HC	GT:AD:AF:DP	0/1:207,228:0.52:435
chr1	94312571	.	G	GC	4140.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.098;ClippingRankSum=0.000;DP=453;ExcessHet=3.0103;FS=4.305;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=0.728;QD=10.73;ReadPosRankSum=0.905;SOR=0.926;set=HC	GT:AD:AF:DP	0/1:209,177:0.46:386
chr1	94312572	.	CGCGGCGGCCGGG	CCGGCGGCCGGG,C	2968	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.63;FR=0.5000,0.5000;HP=4;HapScore=1;MGOF=51;MMLQ=24;MQ=59.91;NF=18,15;NR=91,92;PP=2968,2968;QD=20;SC=CTGGGTCGGGCGCGGCGGCCG;SbPval=0.52;Source=Platypus;TC=109;TCF=18;TCR=91;TR=109,107;WE=94312592;WS=94312518;set=Platypus	GT:AF:DP	0/1:1.00:109
chr1	94312573	.	G	GC	4147.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.488;ClippingRankSum=0.000;DP=436;ExcessHet=3.0103;FS=4.305;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=0.728;QD=10.75;ReadPosRankSum=0.126;SOR=0.926;set=HC	GT:AD:AF:DP	0/1:209,177:0.46:386
chr1	94312576	.	G	GC	19308.73	.	AC=2;AF=1.00;AN=2;DP=409;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.08;QD=47.21;SOR=1.907;set=HC	GT:AD:AF:DP	1/1:0,409:1.00:409
chr1	94312579	.	G	GT,GC	12839.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.420;ClippingRankSum=0.000;DP=381;ExcessHet=3.0103;FS=3.025;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.09;MQRankSum=0.147;QD=33.70;ReadPosRankSum=-0.232;SOR=1.934;set=HC	GT:AD:AF:DP	1/2:2,201,178:0.53,0.47:381
chr1	94312584	rs200230769	G	GC	16150.73	.	AC=2;AF=1.00;AN=2;DB;DP=354;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.09;QD=45.62;SOR=2.005;set=HC	GT:AD:AF:DP	1/1:0,354:1.00:354
chr1	94335194	rs1051394	A	T	535.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:22,23:0.51:45
chr1	94335643	.	G	GA	20	.	AC=1;AF=0.500;AN=2;BRF=0.1;FR=0.5000;HP=7;HapScore=2;MGOF=7;MMLQ=28;MQ=62.36;NF=0;NR=2;PP=20;QD=22.5;SC=AATCTAGGGAGAAAAAATGGC;SbPval=1.0;Source=Platypus;TC=8;TCF=0;TCR=8;TR=2;WE=94335651;WS=94335633;set=Platypus	GT:AD:AF:DP	1/0:6,2:0.25:8
chr1	94336498	rs57384286	C	CA	154.73	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:15,13:0.46:28
chr1	94341137	rs2273166	C	T	860.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:37,34:0.48:71
chr1	94341267	rs2273165	A	G	3547.77	.	AC=1;AF=0.500;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	0/1:268,183:0.41:451
chr1	94342564	rs3747965	C	A	4236.77	.	AC=1;AF=0.500;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	0/1:215,194:0.47:409
chr1	94343023	rs2391322	A	G	6141.77	.	AC=1;AF=0.500;AN=2;DB;DP=599;set=Intersection	GT:AD:AF:DP	0/1:310,284:0.48:594
chr1	94343233	rs3789457	T	C	9394.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:0,325:1.00:325
chr1	94344580	rs6675820	C	A	5945.77	.	AC=1;AF=0.500;AN=2;DB;DP=488;set=Intersection	GT:AD:AF:DP	0/1:218,261:0.54:479
chr1	94344716	rs2235971	C	T	12118.77	.	AC=1;AF=0.500;AN=2;DB;DP=1393;set=Intersection	GT:AD:AF:DP	0/1:783,600:0.43:1383
chr1	94344840	rs6681078	A	C	4528.77	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:153,210:0.58:363
chr1	94360107	rs769211	C	A	323.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:18,15:0.45:33
chr1	94367097	rs7515191	G	A	859.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.053;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=1.748;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.66;ReadPosRankSum=0.307;SOR=0.501;set=HC	GT:AD:AF:DP	0/1:45,44:0.49:89
chr1	94374576	rs2273406	G	A	835.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:60,43:0.42:103
chr1	94374742	rs743119	C	A	1269.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:55,62:0.53:117
chr1	94471075	rs1762114	A	G	13913.77	.	AC=2;AF=1.00;AN=2;DB;DP=523;set=Intersection	GT:AD:AF:DP	1/1:1,514:1.00:515
chr1	94476203	rs112614086	CT	C	4118.73	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:118,126:0.52:244
chr1	94476388	rs1801574	C	G	6563.77	.	AC=1;AF=0.500;AN=2;DB;DP=492;set=Intersection	GT:AD:AF:DP	0/1:197,294:0.60:491
chr1	94476467	rs1801466	T	A	4511.77	.	AC=1;AF=0.500;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	0/1:168,221:0.57:389
chr1	94476555	rs537831	G	A	1310.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:61,54:0.47:115
chr1	94476991	rs4147899	CT	C	3706.73	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:184,157:0.46:341
chr1	94480037	rs2275033	C	T	838.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:54,39:0.42:93
chr1	94487285	rs55860151	AAC	A	2018.73	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:63,63:0.50:126
chr1	94487354	rs472908	G	A	2592.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:153,127:0.45:280
chr1	94495930	rs547806	T	C	5325.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr1	94496253	rs2297671	G	A	965.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:50,44:0.47:94
chr1	94528363	rs4147833	C	T	2551.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:91,115:0.56:206
chr1	94544135	rs4147887	A	AC	1862.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	94544233	rs4147831	G	A	3611.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.000;ClippingRankSum=0.000;DB;DP=328;ExcessHet=3.0103;FS=0.404;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=-0.679;QD=11.11;ReadPosRankSum=-0.779;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:146,179:0.55:325
chr1	94544276	rs4147830	G	A	8556.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:2,327:0.99:329
chr1	94544326	rs3215952	GT	G	7935.73	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:1,226:1.00:227
chr1	94545160	rs2275035	C	T	827.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:26,33:0.56:59
chr1	94549083	rs574741	T	C	2963.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:2,98:0.98:100
chr1	94568491	rs4847278	A	G	2631.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr1	94568660	rs62645943	C	T	4001.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:130,180:0.58:310
chr1	94578548	rs4847281	T	C	10974.77	.	AC=2;AF=1.00;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	1/1:0,406:1.00:406
chr1	94639337	rs1330858	A	G	5440.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.41;SOR=2.290;set=HC	GT:AD:AF:DP	1/1:0,185:1.00:185
chr1	94639447	rs1999272	C	T	18223.77	.	AC=2;AF=1.00;AN=2;DB;DP=686;set=Intersection	GT:AD:AF:DP	1/1:0,674:1.00:674
chr1	94643531	rs1048854	T	C	3846.77	.	AC=1;AF=0.500;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	0/1:208,183:0.47:391
chr1	94667430	rs5776210	G	GA	1026.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	94668046	rs1541099	C	T	12126.77	.	AC=2;AF=1.00;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	1/1:0,438:1.00:438
chr1	94671394	rs12077584	A	G	84.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:11,5:0.31:16
chr1	94674723	rs6684237	G	A	2793.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr1	94883995	rs4148058	C	T	2717.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.321;ClippingRankSum=0.000;DB;DP=314;ExcessHet=3.0103;FS=2.564;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=-0.857;QD=9.00;ReadPosRankSum=1.937;SOR=0.852;set=HC	GT:AD:AF:DP	0/1:173,129:0.43:302
chr1	94964139	rs201875475	AT	A	168.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.088;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=5.842;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.832;QD=1.30;ReadPosRankSum=-0.071;SOR=1.364;set=HC	GT:AD:AF:DP	0/1:95,35:0.27:130
chr1	94980671	rs3118109	C	G	5896.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr1	94982785	rs662813	A	T	989.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.05;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	95001600	rs698946	A	C	5707.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr1	95211525	rs1333953	G	A	809.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:75,42:0.36:117
chr1	95285897	.	C	CCCCAGA	2731.73	.	AC=1;AF=0.500;AN=2;DP=128;set=Intersection	GT:AD:AF:DP	0/1:49,73:0.60:122
chr1	95286085	rs11165252	G	A	3552.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.179;ClippingRankSum=0.000;DB;DP=302;ExcessHet=3.0103;FS=1.377;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.80;ReadPosRankSum=0.029;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:132,169:0.56:301
chr1	95286094	rs10782992	G	T	11171.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.51;SOR=0.774;set=HC	GT:AD:AF:DP	1/1:0,306:1.00:306
chr1	95286658	rs6676991	C	A	914.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:79,49:0.38:128
chr1	95286675	rs11274910	GTCCCAAATGTAAA	G	1428.73	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:58,39:0.40:97
chr1	95290003	rs6687749	C	T	791.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:32,38:0.54:70
chr1	95290305	rs6541372	T	C	1132.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.76;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	95290305	.	TATAAAAAGGA	CATAAAAAGGA,CATAAAAAGGG	213	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.25;FR=0.5000,0.5000;HP=3;HapScore=2;MGOF=1;MMLQ=28;MQ=60.0;NF=6,3;NR=21,10;PP=147,213;QD=6.73226713138;SC=CAGCCTATTTTATAAAAAGGA;SbPval=0.56;Source=Platypus;TC=27;TCF=6;TCR=21;TR=27,13;WE=95290323;WS=95290295;set=Platypus	GT:AF:DP	0/1:1.00:27
chr1	95290315	rs36094793	A	G	351.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.353;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.53;ReadPosRankSum=0.000;SOR=0.418;set=HC	GT:AD:AF:DP	0/1:11,15:0.58:26
chr1	95291366	rs10874894	A	G	5275.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr1	95305440	rs859120	A	G	6814.77	.	AC=1;AF=0.500;AN=2;DB;DP=559;set=Intersection	GT:AD:AF:DP	0/1:239,313:0.57:552
chr1	95332814	rs74104711	C	T	1479.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr1	95360309	rs12030683	C	T	554.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:57,26:0.31:83
chr1	95363698	rs9432611	A	G	228.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:16,11:0.41:27
chr1	95365176	rs9432612	C	T	479.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:11,20:0.65:31
chr1	95367108	rs375560790	AC	A	689.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	95367136	rs859059	G	A	1759.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr1	95367475	rs116127473	C	T	921.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:69,45:0.39:114
chr1	95367773	rs2228344	A	G	1348.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:87,70:0.45:157
chr1	95367894	rs859057	A	C	1356.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	95368574	rs10640200	T	TAA	1116.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.388;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=2.425;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.64;ReadPosRankSum=0.484;SOR=0.385;set=HC	GT:AD:AF:DP	0/1:37,68:0.65:105
chr1	95369211	rs859054	T	G	2359.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:98,103:0.51:201
chr1	95369251	rs140801492	TAAC	T	1495.73	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:49,40:0.45:89
chr1	95392563	rs114400894	C	T	935.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:49,43:0.47:92
chr1	95392588	rs115445502	C	T	924.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:26,37:0.59:63
chr1	95427041	rs377385319	ATT	A	2208.73	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:9,79:0.90:88
chr1	95428414	rs2766005	G	A	878.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:32,36:0.53:68
chr1	95428455	rs60283438	C	CT	1162.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.429;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.000;QD=9.30;ReadPosRankSum=-1.529;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:39,86:0.69:125
chr1	95615748	rs71876426	C	CT	69.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.513;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.49;ReadPosRankSum=-0.712;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:19,9:0.32:28
chr1	95696709	rs11165349	T	G	627.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:35,29:0.45:64
chr1	95705615	rs640527	G	A	3897.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr1	95709821	rs259358	T	C	10495.77	.	AC=2;AF=1.00;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	1/1:0,391:1.00:391
chr1	95709939	rs2296308	T	G	4661.77	.	AC=1;AF=0.500;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	0/1:208,209:0.50:417
chr1	95710329	rs1062076	A	G	711.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:29,29:0.50:58
chr1	95712458	rs592097	C	A	991.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:81,50:0.38:131
chr1	97189091	rs3762411	G	A	1104.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:59,61:0.51:120
chr1	97236130	rs3762409	G	A	269.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:10,11:0.52:21
chr1	97272456	rs6699932	A	G	4439.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:113,207:0.65:320
chr1	97278804	rs273886	G	A	1817.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:50,79:0.61:129
chr1	97544760	rs17116357	C	G	690.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:24,26:0.52:50
chr1	97547831	rs290854	G	A	5113.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr1	97981242	rs2811178	TG	CA	2383.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr1	97981395	rs1801159	T	C	13517.77	.	AC=2;AF=1.00;AN=2;DB;DP=519;set=Intersection	GT:AD:AF:DP	1/1:2,513:1.00:515
chr1	98348885	rs1801265	G	A	10622.77	.	AC=2;AF=1.00;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	1/1:0,405:1.00:405
chr1	98349390	rs111231337	C	CA	860.80	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.388;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=0.611;QD=12.48;ReadPosRankSum=0.028;SOR=0.781;set=HC	GT:AD:AF:DP	0/1:14,55:0.80:69
chr1	98511733	.	G	GCCGCTGCCGCTGCTACCGCTGCCGCTGCTA	1335.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.178;ClippingRankSum=0.000;DP=147;ExcessHet=3.0103;FS=5.761;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.995;QD=15.18;ReadPosRankSum=1.273;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:58,30:0.34:88
chr1	99127205	rs12723363	A	G	362.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	99127392	rs9728148	T	C	1813.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr1	99150635	rs9433747	G	A	2953.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr1	99156905	rs187219755	A	T	70.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:8,5:0.38:13
chr1	99157339	.	C	T	654.77	.	AC=1;AF=0.500;AN=2;DP=53;set=Intersection	GT:AD:AF:DP	0/1:24,27:0.53:51
chr1	99164246	.	CT	C	199.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.487;ClippingRankSum=0.000;DP=149;ExcessHet=3.0103;FS=1.903;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=2.565;QD=1.37;ReadPosRankSum=0.023;SOR=0.999;set=HC	GT:AD:AF:DP	0/1:106,40:0.27:146
chr1	99164434	rs6577322	G	A	7858.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr1	99225627	rs2019213	G	A	8999.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:0,355:1.00:355
chr1	99358542	rs55842403	C	T	7851.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr1	99358761	rs7524256	T	C	4030.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr1	99387628	rs34854879	T	TA	4643.73	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:5,207:0.98:212
chr1	99418647	rs309087	G	C	1032.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:105,54:0.34:159
chr1	99418911	.	T	TTGTGTGTG	661.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.941;ClippingRankSum=0.000;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=-0.847;QD=14.39;ReadPosRankSum=-0.661;SOR=0.484;set=HC	GT:AD:AF:DP	0/1:24,22:0.48:46
chr1	99418948	rs377156706	T	TGTGTGA,TGTGTGTGA	486.73	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=51;set=Intersection	GT:AF:DP	0/1:0.46:48
chr1	99422076	.	C	T	1166.77	.	AC=1;AF=0.500;AN=2;DP=109;set=Intersection	GT:AD:AF:DP	0/1:55,54:0.50:109
chr1	100181380	.	G	GA	39.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.597;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=1.622;QD=1.47;ReadPosRankSum=1.551;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:19,8:0.30:27
chr1	100182884	rs6696586	C	T	5976.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr1	100184963	rs35626078	C	CA	301.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.624;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=3.276;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.80;ReadPosRankSum=0.725;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:25,27:0.52:52
chr1	100185282	rs6679013	G	T	2401.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr1	100194305	rs7522921	C	G	7402.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr1	100203501	rs7537095	C	T	1756.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr1	100203571	rs7548709	A	G	4167.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr1	100203597	rs7513916	G	A	5730.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr1	100203648	rs7537296	C	T	8282.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr1	100203693	rs7514021	G	A	8923.77	.	AC=2;AF=1.00;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	1/1:0,342:1.00:342
chr1	100203902	rs10875245	C	T	1077.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	100207818	rs41285734	C	G	6487.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr1	100214391	rs1416237	T	A	2020.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr1	100316589	rs2307130	A	G	2611.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr1	100316765	rs663848	C	T	1840.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr1	100329889	rs535461	G	C	11892.77	.	AC=2;AF=1.00;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	1/1:1,433:1.00:434
chr1	100335883	rs903126	A	G	1870.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr1	100336361	rs2230306	C	T	2864.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr1	100340225	rs634880	G	A	6730.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr1	100342227	rs3736295	C	T	5529.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:1,194:0.99:195
chr1	100343153	rs2291638	A	G	3005.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr1	100345409	rs2392077	C	G	4006.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr1	100346741	rs3736296	T	C	6794.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr1	100350383	rs2234707	G	A	1630.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr1	100353675	rs555929	G	A	9724.77	.	AC=2;AF=1.00;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	1/1:0,354:1.00:354
chr1	100357141	rs2035961	T	A	3810.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr1	100358200	rs594249	G	A	6585.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr1	100366446	rs35956186	GTT	G,GT	2143.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.901;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=8.450;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.14;MQRankSum=0.450;QD=18.32;ReadPosRankSum=2.049;SOR=1.782;set=HC	GT:AD:AF:DP	1/2:12,80,25:0.68,0.21:117
chr1	100376448	rs2274570	G	A	5915.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.87;SOR=1.751;set=HC	GT:AD:AF:DP	1/1:0,138:1.00:138
chr1	100376456	rs1541041	T	A	5743.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.18;SOR=1.779;set=HC	GT:AD:AF:DP	1/1:0,130:1.00:130
chr1	100381109	rs112476688	A	AT	799.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.070;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=0.000;QD=14.03;ReadPosRankSum=0.715;SOR=1.047;set=HC	GT:AD:AF:DP	0/1:9,48:0.84:57
chr1	100381869	rs2296885	G	A	438.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	100533960	rs6687189	G	A	3561.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr1	100575933	rs13375867	G	A	5100.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr1	100598866	rs472498	GC	AT	12732.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr1	100617887	rs2784177	C	T	3659.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr1	100626182	rs35699743	C	CT	210.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.884;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=3.729;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.000;QD=1.62;ReadPosRankSum=0.635;SOR=1.174;set=HC	GT:AD:AF:DP	0/1:96,34:0.26:130
chr1	100671865	rs201755806	T	TA	265.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.802;ClippingRankSum=0.000;DB;DP=219;ExcessHet=3.0103;FS=1.404;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.43;ReadPosRankSum=-1.111;SOR=0.831;set=HC	GT:AD:AF:DP	0/1:137,49:0.26:186
chr1	100671866	rs34229137	T	A	3891.73	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=0.081;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=20.92;ReadPosRankSum=-0.257;SOR=0.639;set=HC	GT:AD:AF:DP	1/1:18,168:0.90:186
chr1	100672060	rs12021720	T	C	9859.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:0,359:1.00:359
chr1	100680593	rs11431894	C	CT	373.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.62;MQRankSum=1.162;QD=8.90;ReadPosRankSum=-1.239;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:16,26:0.62:42
chr1	100715454	rs3806235	G	A	14514.77	.	AC=2;AF=1.00;AN=2;DB;DP=526;set=Intersection	GT:AD:AF:DP	1/1:0,518:1.00:518
chr1	100733207	rs60634058	G	GT,GTT	7434.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.107;ClippingRankSum=0.000;DB;DP=563;ExcessHet=3.0103;FS=0.813;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=15.85;ReadPosRankSum=2.221;SOR=0.825;set=HC	GT:AD:AF:DP	1/2:64,212,193:0.45,0.41:469
chr1	100733552	rs4298755	T	C	2848.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr1	100750733	rs58046505	AGTTTT	A	9667.73	.	AC=2;AF=1.00;AN=2;DB;DP=233;MQ=60.42;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr1	100817384	rs28361189	A	G	1339.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:103,69:0.40:172
chr1	100818464	rs594529	T	C	1046.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:70,53:0.43:123
chr1	100819273	rs2297170	T	C	527.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:21,22:0.51:43
chr1	100856479	rs28361213	C	T	2092.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:118,109:0.48:227
chr1	100908324	rs584350	A	G	82.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:9,5:0.36:14
chr1	100908577	rs78861171	A	T	846.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:72,46:0.39:118
chr1	100949860	rs2270694	G	A	900.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.850;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=1.515;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.90;ReadPosRankSum=-0.429;SOR=0.544;set=HC	GT:AD:AF:DP	0/1:67,47:0.41:114
chr1	100961779	rs149672640	ATT	A	1095.73	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.16;QD=21.48;SOR=2.985;set=HC	GT:AD:AF:DP	1/1:10,41:0.80:51
chr1	101005090	rs2809819	G	A	2377.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:158,112:0.41:270
chr1	101190173	rs2392221	C	T	2284.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:179,111:0.38:290
chr1	101203827	rs3176879	G	A	3924.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr1	101342497	rs2295280	T	C	1163.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:22,42:0.66:64
chr1	101372607	rs4908106	C	A	1196.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	101377845	rs10493940	A	G	1046.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:36,45:0.56:81
chr1	101475901	rs7521424	T	C	256.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:7,13:0.65:20
chr1	101476786	rs34915449	G	A	337.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.069;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=5.015;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.13;ReadPosRankSum=-1.192;SOR=1.739;set=HC	GT:AD:AF:DP	0/1:20,17:0.46:37
chr1	101476800	rs35409691	CA	C	308.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.711;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=6.967;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.53;ReadPosRankSum=1.014;SOR=1.840;set=HC	GT:AD:AF:DP	0/1:23,18:0.44:41
chr1	101476814	rs17123612	C	T	410.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.602;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=6.360;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.13;ReadPosRankSum=1.696;SOR=1.447;set=HC	GT:AD:AF:DP	0/1:24,21:0.47:45
chr1	101487373	rs67726104	AACACAC	A	453.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.162;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=2.702;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.12;ReadPosRankSum=-2.236;SOR=2.030;set=HC	GT:AD:AF:DP	0/1:16,14:0.47:30
chr1	101491108	rs7521668	C	A	2391.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:61,102:0.63:163
chr1	101704532	rs3737577	G	T	2234.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:108,102:0.49:210
chr1	102271774	rs4907955	G	A	5304.77	.	AC=1;AF=0.500;AN=2;DB;DP=516;set=Intersection	GT:AD:AF:DP	0/1:252,260:0.51:512
chr1	102462446	rs67744758	GTCAGT	G	4281.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.579;ClippingRankSum=0.000;DB;DP=225;ExcessHet=3.0103;FS=2.416;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=0.963;QD=20.20;ReadPosRankSum=0.470;SOR=0.903;set=HC	GT:AD:AF:DP	0/1:101,111:0.52:212
chr1	103352451	rs2229783	A	G	3449.77	.	AC=1;AF=0.500;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	0/1:166,167:0.50:333
chr1	103354138	rs1676486	A	G	2288.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:86,104:0.55:190
chr1	103354428	rs1763347	A	G	1636.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:72,79:0.52:151
chr1	103354939	rs113226085	C	CTGTGTGTGTG	1495.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.449;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=-0.817;QD=18.02;ReadPosRankSum=-1.485;SOR=0.570;set=HC	GT:AD:AF:DP	0/1:33,50:0.60:83
chr1	103356168	rs1085	A	C	1090.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:37,47:0.56:84
chr1	103380379	rs34228277	T	TA	233.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.111;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.66;ReadPosRankSum=-0.259;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:10,17:0.63:27
chr1	103381129	rs4908273	C	T	3086.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:113,147:0.57:260
chr1	103399906	rs11164640	G	A	531.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.689;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=1.121;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.33;ReadPosRankSum=1.970;SOR=0.440;set=HC	GT:AD:AF:DP	0/1:30,27:0.47:57
chr1	103400491	rs11164641	GA	AT	3357.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr1	103405892	rs17127270	G	A	1567.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.401;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.80;ReadPosRankSum=-0.428;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:84,76:0.47:160
chr1	103427381	rs1012282	A	G	763.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:57,43:0.43:100
chr1	103427407	rs1012281	T	C	824.73	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:55,44:0.44:99
chr1	103428389	rs1841834	G	A	1693.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:56,73:0.57:129
chr1	103435626	rs2061710	G	A	106.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:9,6:0.40:15
chr1	103444497	rs1903787	A	G	2149.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:95,96:0.50:191
chr1	103445223	rs2622846	G	A	821.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:28,39:0.58:67
chr1	103449598	rs2615978	G	C	407.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:17,16:0.48:33
chr1	103455217	rs1463034	C	T	257.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:18,14:0.44:32
chr1	103461508	rs2622867	T	A	546.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:32,28:0.47:60
chr1	103462473	rs2786125	A	G	823.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:30,29:0.49:59
chr1	103467615	rs2929162	C	T	481.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:46,26:0.36:72
chr1	103468609	rs2251895	A	G	948.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.139;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=2.930;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.99;ReadPosRankSum=-2.020;SOR=0.429;set=HC	GT:AD:AF:DP	0/1:48,47:0.49:95
chr1	103468902	rs149522499	C	T	924.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:68,45:0.40:113
chr1	103471456	rs71752747	CCAT	C	4564.73	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:100,122:0.55:222
chr1	103471734	.	A	AAAATAAATAAATAAAT	3310.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.403;ClippingRankSum=0.000;DP=333;ExcessHet=3.0103;FS=8.938;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.12;ReadPosRankSum=1.009;SOR=0.429;set=HC	GT:AD:AF:DP	0/1:129,90:0.41:219
chr1	103487394	rs35291481	CT	C	719.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.297;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=0.986;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.009;QD=5.95;ReadPosRankSum=1.232;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:67,54:0.45:121
chr1	103496620	rs7523441	G	T	504.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:32,23:0.42:55
chr1	103496805	rs36076089	GA	G	329.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.040;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.972;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=1.661;QD=4.28;ReadPosRankSum=-1.352;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:44,33:0.43:77
chr1	103548497	rs11164663	A	C	2016.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:155,106:0.41:261
chr1	103573517	.	CT	C	217.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.240;ClippingRankSum=0.000;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.57;ReadPosRankSum=0.459;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:34,27:0.44:61
chr1	103573547	rs6691654	G	A	2879.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.18;SOR=1.505;set=HC	GT:AD:AF:DP	1/1:0,110:1.00:110
chr1	104076462	rs6697444	C	T	1092.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.65;SOR=0.741;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	104076495	rs6702220	A	G	954.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	104076537	rs6702324	A	T	609.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	104080169	rs10736038	G	C	1009.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	104084226	rs10881232	A	G	1059.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	104086145	rs10785725	A	G	1444.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	104089773	rs7529928	C	G	257.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	104094507	.	C	CTT	50	.	AC=1;AF=0.500;AN=2;BRF=0.4;FR=0.7926;HP=16;HapScore=2;MGOF=26;MMLQ=26;MQ=60.0;NF=0;NR=4;PP=50;QD=13.25;SC=TCAGGTATCTCTTTTTTTTTT;SbPval=1.0;Source=Platypus;TC=6;TCF=0;TCR=6;TR=4;WE=104094515;WS=104094497;set=Platypus	GT:AD:AF:DP	0/1:2,4:0.67:6
chr1	104116413	rs17851840	T	C	3410.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:162,162:0.50:324
chr1	104117892	rs140209167	T	C	2433.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:71,113:0.61:184
chr1	104256478	rs167447	T	A	38.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=19.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr1	107946262	rs12126267	G	A	1453.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:32,62:0.66:94
chr1	107946324	rs71897263	CA	C	1120.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.747;ClippingRankSum=0.000;DB;DP=308;ExcessHet=3.0103;FS=2.327;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.89;ReadPosRankSum=0.649;SOR=0.536;set=HC	GT:AD:AF:DP	0/1:174,114:0.40:288
chr1	107979396	rs480392	A	C	6075.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr1	108139003	rs3748702	C	T	1722.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:47,68:0.59:115
chr1	108152332	rs1328208	T	A	1373.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:30,55:0.65:85
chr1	108160260	rs5776894	GA	G	2533.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.631;ClippingRankSum=0.000;DB;DP=327;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=0.800;QD=8.50;ReadPosRankSum=0.656;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:117,181:0.61:298
chr1	108185301	rs12403266	C	G	1232.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:67,60:0.47:127
chr1	108292260	rs6672483	A	G	2260.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr1	108299775	rs34437461	ATG	A	39.73	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:35,8:0.19:43
chr1	108299809	rs12138353	G	A	1104.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.184;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=1.376;MLEAC=1;MLEAF=0.500;MQ=62.62;MQRankSum=2.919;QD=14.54;ReadPosRankSum=2.157;SOR=1.082;set=HC	GT:AD:AF:DP	0/1:45,31:0.41:76
chr1	108307642	rs7514025	C	T	2122.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr1	108307727	rs7528153	T	A	2614.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:157,129:0.45:286
chr1	108313258	rs6583048	C	T	3052.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr1	108315256	rs7416884	G	C	1148.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:46,47:0.51:93
chr1	108315305	rs4611048	C	T	6247.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr1	108507541	rs71796067	GGCC	G	1213.73	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	108766424	rs3879436	A	G	10187.77	.	AC=2;AF=1.00;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	1/1:0,371:1.00:371
chr1	108769240	.	G	A	90.03	.	AC=2;AF=1.00;AN=2;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.25;QD=22.51;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	108769307	rs367656931	G	A	100.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=25.01;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	108771524	rs200205508	C	T	821.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=31.61;SOR=6.593;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	109010348	.	C	T	1800.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.937;ClippingRankSum=0.000;DP=370;ExcessHet=3.0103;FS=1.667;MLEAC=1;MLEAF=0.500;MQ=57.54;MQRankSum=-3.579;QD=4.95;ReadPosRankSum=2.143;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:264,100:0.27:364
chr1	109170746	rs2133198	C	T	3470.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr1	109200268	.	C	CA	194.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.318;ClippingRankSum=0.000;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.651;QD=1.65;ReadPosRankSum=-0.443;SOR=0.564;set=HC	GT:AD:AF:DP	0/1:89,29:0.25:118
chr1	109241669	rs2297563	G	A	272.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:10,11:0.52:21
chr1	109255513	rs3006864	G	T	6048.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr1	109260357	rs4970804	G	A	4027.77	.	AC=1;AF=0.500;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	0/1:207,195:0.49:402
chr1	109265029	rs4423040	G	T	1491.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:95,73:0.43:168
chr1	109268441	rs11582005	G	A	3407.77	.	AC=1;AF=0.500;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:153,164:0.52:317
chr1	109268573	rs4494160	T	C	7257.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr1	109270402	rs10494096	G	A	3087.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr1	109273456	rs4970809	A	G	14373.77	.	AC=2;AF=1.00;AN=2;DB;DP=530;set=Intersection	GT:AD:AF:DP	1/1:1,522:1.00:523
chr1	109273610	rs4970810	G	A	4089.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr1	109289236	rs1124426	C	A	107.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	109289353	rs1124427	C	G	669.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	109289487	rs6604120	C	T	543.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	109299453	rs1277044	C	G	1463.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr1	109301019	rs3841723	GC	G	686.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	109301250	rs1277042	G	C	2769.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr1	109315211	rs1623641	A	G	736.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	109321824	rs1759481	G	T	3859.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr1	109338861	rs1127635	G	C	4073.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:2,160:0.99:162
chr1	109339414	.	G	GT	168.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.607;ClippingRankSum=0.000;DP=104;ExcessHet=3.0103;FS=1.031;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.705;QD=1.94;ReadPosRankSum=0.667;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:66,21:0.24:87
chr1	109350198	.	G	GT	191.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.566;ClippingRankSum=0.000;DP=139;ExcessHet=3.0103;FS=1.127;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.26;ReadPosRankSum=-0.028;SOR=0.487;set=HC	GT:AD:AF:DP	0/1:60,25:0.29:85
chr1	109358755	rs11453763	A	AT	7908.73	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:2,326:0.99:328
chr1	109366286	rs7522157	C	T	3545.77	.	AC=1;AF=0.500;AN=2;DB;DP=488;set=Intersection	GT:AD:AF:DP	0/1:297,187:0.39:484
chr1	109366370	rs7522260	C	T	1784.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:113,87:0.43:200
chr1	109369797	rs11102506	T	G	2816.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr1	109369915	rs7551421	G	T	1784.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:105,92:0.47:197
chr1	109372968	rs1277221	T	G	210.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:17,12:0.41:29
chr1	109377157	rs5776950	TA	T	2465.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.554;ClippingRankSum=0.000;DB;DP=208;ExcessHet=3.0103;FS=5.777;MLEAC=2;MLEAF=1.000;MQ=60.16;MQRankSum=-2.632;QD=12.91;ReadPosRankSum=0.865;SOR=0.843;set=HC	GT:AD:AF:DP	1/1:23,168:0.88:191
chr1	109391486	rs1149142	G	A	2751.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr1	109391662	rs11580913	G	C	1737.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:94,85:0.47:179
chr1	109394978	rs17563390	G	A	5536.77	.	AC=1;AF=0.500;AN=2;DB;DP=489;set=Intersection	GT:AD:AF:DP	0/1:220,253:0.53:473
chr1	109395105	rs1277207	C	T	14966.77	.	AC=2;AF=1.00;AN=2;DB;DP=562;set=Intersection	GT:AD:AF:DP	1/1:0,547:1.00:547
chr1	109428249	rs10857987	G	A	897.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:25,41:0.62:66
chr1	109444370	rs2270536	A	T	3398.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:123,158:0.56:281
chr1	109445706	rs9662782	T	G	652.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:32,32:0.50:64
chr1	109456850	rs1664419	G	A	456.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:30,22:0.42:52
chr1	109465165	rs35029887	ACTT	A	12332.73	.	AC=1;AF=0.500;AN=2;DB;DP=625;MQ=60.05;set=Intersection	GT:AD:AF:DP	0/1:295,318:0.52:613
chr1	109466858	rs705268	G	A	2527.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:96,112:0.54:208
chr1	109474221	rs1769740	C	T	723.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.289;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.942;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.49;ReadPosRankSum=0.156;SOR=0.545;set=HC	GT:AD:AF:DP	0/1:35,34:0.49:69
chr1	109477653	rs839850	G	A	550.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:24,24:0.50:48
chr1	109479959	rs56223817	G	A	5110.77	.	AC=1;AF=0.500;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	0/1:178,226:0.56:404
chr1	109479978	rs168107	G	T	5482.77	.	AC=1;AF=0.500;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	0/1:180,242:0.57:422
chr1	109482220	rs338480	C	T	1824.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:62,78:0.56:140
chr1	109482826	rs338479	C	T	3259.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:135,152:0.53:287
chr1	109486196	rs338466	A	G	15382.77	.	AC=2;AF=1.00;AN=2;DB;DP=600;MQ=60.02;set=Intersection	GT:AD:AF:DP	1/1:0,599:1.00:599
chr1	109486240	rs3215062	TA	T	5799.73	.	AC=1;AF=0.500;AN=2;DB;DP=622;set=Intersection	GT:AD:AF:DP	0/1:333,268:0.45:601
chr1	109490457	rs839543	T	C	2726.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr1	109493134	rs34131552	G	GTTA	1026.73	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:37,29:0.44:66
chr1	109529322	rs61696019	T	TAA	4207.73	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr1	109533754	rs143803063	C	A	1323.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:43,56:0.57:99
chr1	109545046	rs184606	C	T	1777.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr1	109618308	rs34069017	G	A	458.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:20,19:0.49:39
chr1	109635398	rs512671	A	G	4199.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr1	109637229	rs551001	C	G	291.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:12,12:0.50:24
chr1	109648794	rs17641032	A	G	958.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:41,47:0.53:88
chr1	109648870	rs533212	C	G	689.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	109649764	rs140209036	C	G	1262.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:44,56:0.56:100
chr1	109650386	rs75965052	T	C	493.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:19,22:0.54:41
chr1	109656043	.	AG	A	961.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.429;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=5.097;MLEAC=1;MLEAF=0.500;MQ=63.51;MQRankSum=2.044;QD=29.14;ReadPosRankSum=0.657;SOR=2.387;set=HC	GT:AD:AF:DP	0/1:6,27:0.82:33
chr1	109656045	.	AGAGAGAGAGAGAGAGAG	A	961.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.162;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=5.097;MLEAC=1;MLEAF=0.500;MQ=63.71;MQRankSum=2.044;QD=29.14;ReadPosRankSum=1.157;SOR=2.387;set=HC	GT:AD:AF:DP	0/1:6,27:0.82:33
chr1	109656420	rs536176	T	C	934.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	109656946	rs667524	T	C	9795.77	.	AC=2;AF=1.00;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	1/1:0,376:1.00:376
chr1	109656981	rs586530	T	C	3072.77	.	AC=1;AF=0.500;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	0/1:209,154:0.42:363
chr1	109704390	rs643197	C	G	2255.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr1	109704618	rs678238	A	G	9404.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	1/1:0,353:1.00:353
chr1	109727475	rs649531	T	C	592.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	109727832	rs12239854	A	G	460.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:39,23:0.37:62
chr1	109734157	rs606066	T	C	1139.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:80,48:0.38:128
chr1	109734225	rs643785	G	T	715.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:29,28:0.49:57
chr1	109734541	rs645128	C	T	3341.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr1	109735298	rs658779	T	C	3643.77	.	AC=1;AF=0.500;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	0/1:244,189:0.44:433
chr1	109735416	rs659543	A	C	3021.77	.	AC=1;AF=0.500;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	0/1:214,149:0.41:363
chr1	109735504	rs659659	T	C	945.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:85,47:0.36:132
chr1	109737063	rs2359246	C	T	1162.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.932;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.06;ReadPosRankSum=0.075;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:126,66:0.34:192
chr1	109737090	rs2359245	G	A	1543.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.109;ClippingRankSum=0.000;DB;DP=284;ExcessHet=3.0103;FS=0.462;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.47;ReadPosRankSum=1.158;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:189,93:0.33:282
chr1	109737132	rs2359244	T	C	1918.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.418;ClippingRankSum=0.000;DB;DP=340;ExcessHet=3.0103;FS=0.872;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.68;ReadPosRankSum=-0.652;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:225,113:0.33:338
chr1	109737172	rs2359243	C	T	1756.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:208,103:0.33:311
chr1	109737314	rs2359242	T	C	477.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.122;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=1.942;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.62;ReadPosRankSum=-0.709;SOR=0.305;set=HC	GT:AD:AF:DP	0/1:31,14:0.31:45
chr1	109737320	rs2359241	G	A	451.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.119;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=10.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.76;ReadPosRankSum=-1.087;SOR=0.045;set=HC	GT:AD:AF:DP	0/1:28,14:0.33:42
chr1	109740306	.	T	TGA,TGAGA	560.73	.	AC=1,0;AF=0.500,0.00;AN=2;DP=103;set=Intersection	GT:AF:DP	0/1:0.34:76
chr1	109740310	.	AGT	A	1825	.	AC=1;AF=0.500;AN=2;BRF=0.27;FR=0.5000;HP=2;HapScore=4;MGOF=11;MMLQ=27;MQ=60.0;NF=0;NR=33;PP=1825;QD=55.4242424242;SC=CTTGTTTGAGAGTGTGTGTGT;SbPval=1.0;Source=Platypus;TC=76;TCF=2;TCR=74;TR=33;WE=109740322;WS=109740296;set=Platypus	GT:AD:AF:DP	1/0:43,33:0.43:76
chr1	109740312	rs111949682	T	A	870.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.960;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=4.711;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.77;ReadPosRankSum=2.853;SOR=1.666;set=HC	GT:AD:AF:DP	0/1:43,31:0.42:74
chr1	109740314	rs111269564	T	A	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.928;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.69;ReadPosRankSum=1.430;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:66,10:0.13:76
chr1	109742452	rs913178	C	T	505.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:16,20:0.56:36
chr1	109742485	rs913179	G	A	622.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:27,26:0.49:53
chr1	109743622	rs3736956	C	T	763.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:30,34:0.53:64
chr1	109745618	rs1052878	T	C	8472.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr1	109771063	rs683182	T	C	7497.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr1	109771881	rs657511	G	T	537.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	109773705	rs141018095	ATT	A	187.27	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.253;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=18.73;ReadPosRankSum=1.645;SOR=3.258;set=HC	GT:AD:AF:DP	0/1:1,9:0.90:10
chr1	109778577	rs658092	T	C	4352.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr1	109779556	rs631927	T	A	5353.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;MQ=60.05;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr1	109779621	rs11439617	T	TC	2614.73	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr1	109792735	rs144034706	A	ACGC	4903.74	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:19,210:0.92:229
chr1	109794252	rs454107	T	C	26240.77	.	AC=2;AF=1.00;AN=2;DB;DP=986;set=Intersection	GT:AD:AF:DP	1/1:0,976:1.00:976
chr1	109795026	rs413380	T	C	15441.77	.	AC=2;AF=1.00;AN=2;DB;DP=594;set=Intersection	GT:AD:AF:DP	1/1:0,584:1.00:584
chr1	109795608	rs437444	T	C	13083.77	.	AC=2;AF=1.00;AN=2;DB;DP=475;set=Intersection	GT:AD:AF:DP	1/1:0,471:1.00:471
chr1	109804646	rs4970833	G	A	627.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:44,25:0.36:69
chr1	109806442	rs1337248	C	A	4720.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:1,157:0.99:158
chr1	109806834	rs6698843	C	T	4507.77	.	AC=1;AF=0.500;AN=2;DB;DP=487;set=Intersection	GT:AD:AF:DP	0/1:261,216:0.45:477
chr1	109807099	rs6689614	G	A	5159.77	.	AC=1;AF=0.500;AN=2;DB;DP=502;set=Intersection	GT:AD:AF:DP	0/1:232,261:0.53:493
chr1	109813020	rs3895559	G	A	1819.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:48,81:0.63:129
chr1	109813236	rs111491315	TTCCCAGTCTTGGGG	T	6081.73	.	AC=1;AF=0.500;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	0/1:258,165:0.39:423
chr1	109813510	rs41279716	A	T	1277.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:63,55:0.47:118
chr1	109813719	rs17035665	C	T	3029.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:132,140:0.51:272
chr1	109815653	.	G	A	2788.77	.	AC=1;AF=0.500;AN=2;DP=264;set=Intersection	GT:AD:AF:DP	0/1:137,124:0.48:261
chr1	109816176	rs441853	A	C	12960.77	.	AC=2;AF=1.00;AN=2;DB;DP=492;set=Intersection	GT:AD:AF:DP	1/1:0,482:1.00:482
chr1	109825360	rs643457	C	T	702.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	109836835	rs3738777	A	G	4953.77	.	AC=1;AF=0.500;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	0/1:173,238:0.58:411
chr1	109836842	rs646335	C	G	3109.77	.	AC=1;AF=0.500;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	0/1:234,166:0.41:400
chr1	109838833	rs616899	T	C	1788.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:2,61:0.97:63
chr1	109838918	rs629001	C	T	4686.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr1	109839063	.	AT	A	95.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.455;ClippingRankSum=0.000;DP=52;ExcessHet=3.0103;FS=12.522;MLEAC=1;MLEAF=0.500;MQ=60.42;MQRankSum=1.302;QD=2.90;ReadPosRankSum=0.295;SOR=3.056;set=HC	GT:AD:AF:DP	0/1:20,13:0.39:33
chr1	109839392	rs604349	A	G	7375.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr1	109839433	rs1278285	A	G	11071.77	.	AC=2;AF=1.00;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	1/1:0,394:1.00:394
chr1	109839738	rs3850615	C	A	5350.77	.	AC=1;AF=0.500;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	0/1:168,239:0.59:407
chr1	109839896	rs7515901	C	T	2006.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:65,85:0.57:150
chr1	109839954	rs603624	G	C	2763.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr1	109856842	rs372331171	TG	T	123.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.937;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=21.681;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.13;ReadPosRankSum=0.865;SOR=0.015;set=HC	GT:AD:AF:DP	0/1:46,12:0.21:58
chr1	109883576	rs3217347	C	CAT	2170.73	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:83,59:0.42:142
chr1	109884775	rs2228604	T	G	993.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:49,45:0.48:94
chr1	109897103	rs11142	A	G	2059.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:146,104:0.42:250
chr1	109898263	rs143094090	A	ACC	370.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.642;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.96;ReadPosRankSum=-0.802;SOR=0.420;set=HC	GT:AD:AF:DP	0/1:18,13:0.42:31
chr1	109898267	rs376387346	GC	G,GCC	756.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=30.27;SOR=6.518;set=HC	GT:AD:AF:DP	1/2:0,15,10:0.60,0.40:25
chr1	109940503	rs72646553	G	C	223.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:8,12:0.60:20
chr1	109958035	rs1465607	T	C	699.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:38,32:0.46:70
chr1	110009434	rs2787015	A	C	2412.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:135,111:0.45:246
chr1	110009654	rs138525393	AC	A	4478.73	.	AC=1;AF=0.500;AN=2;DB;DP=448;set=Intersection	GT:AD:AF:DP	0/1:219,183:0.46:402
chr1	110018148	rs530565	C	T	4039.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr1	110019439	rs62623713	A	G	3909.77	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:165,178:0.52:343
chr1	110020341	rs57128261	C	T	1484.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:66,62:0.48:128
chr1	110030895	rs72074532	GTC	G	1150.73	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:31,31:0.50:62
chr1	110030945	rs1144593	A	G	3996.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr1	110035159	rs11590351	T	C	1932.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:85,95:0.53:180
chr1	110035318	rs34382032	AT	A	966.73	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.20;QD=21.02;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	110036919	rs76997102	C	G	2722.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.944;ClippingRankSum=0.000;DB;DP=255;ExcessHet=3.0103;FS=0.977;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.11;ReadPosRankSum=-0.306;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:118,127:0.52:245
chr1	110036998	rs17575205	G	C	1522.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:79,63:0.44:142
chr1	110037838	rs749056	T	G	5508.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr1	110199172	.	CTGTGTGTG	C	681.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.063;ClippingRankSum=0.000;DP=72;ExcessHet=3.0103;FS=7.707;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=-3.242;QD=26.22;ReadPosRankSum=-0.366;SOR=0.439;set=HC	GT:AD:AF:DP	0/1:6,20:0.77:26
chr1	110200294	rs41283498	G	A	6655.77	.	AC=1;AF=0.500;AN=2;DB;DP=839;set=Intersection	GT:AD:AF:DP	0/1:478,357:0.43:835
chr1	110200360	rs560018	T	C	17947.77	.	AC=2;AF=1.00;AN=2;DB;DP=673;set=Intersection	GT:AD:AF:DP	1/1:0,661:1.00:661
chr1	110201580	rs650985	C	T	15365.77	.	AC=2;AF=1.00;AN=2;DB;DP=583;set=Intersection	GT:AD:AF:DP	1/1:0,578:1.00:578
chr1	110201699	rs506008	T	C	7105.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr1	110201809	rs562996	G	T	16695.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.53;QD=44.88;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,372:1.00:372
chr1	110201812	rs563003	A	G	16864.77	.	AC=2;AF=1.00;AN=2;DB;DP=391;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.63;QD=44.50;SOR=0.786;set=HC	GT:AD:AF:DP	1/1:0,379:1.00:379
chr1	110207482	rs670439	C	T	473.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:29,22:0.43:51
chr1	110210671	rs625456	G	T	3402.77	.	AC=1;AF=0.500;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	0/1:220,175:0.44:395
chr1	110210780	rs530021	C	G	9055.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.93;QD=26.48;SOR=0.897;set=HC	GT:AD:AF:DP	1/1:0,342:1.00:342
chr1	110211956	rs592792	C	T	4748.77	.	AC=1;AF=0.500;AN=2;DB;DP=760;set=Intersection	GT:AD:AF:DP	0/1:496,256:0.34:752
chr1	110252010	rs1292098	T	C	11613.77	.	AC=2;AF=1.00;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	1/1:1,452:1.00:453
chr1	110252091	rs35677255	G	A	2470.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:203,128:0.39:331
chr1	110255174	rs929166	T	G	2142.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:89,93:0.51:182
chr1	110256075	rs2479390	A	G	3179.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:102,129:0.56:231
chr1	110256507	rs886177	G	A	3475.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:139,162:0.54:301
chr1	110279701	rs7483	C	T	2632.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:116,117:0.50:233
chr1	110279821	rs1537234	C	A	6777.77	.	AC=1;AF=0.500;AN=2;DB;DP=721;set=Intersection	GT:AD:AF:DP	0/1:381,335:0.47:716
chr1	110279914	rs1571858	C	T	2941.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:204,141:0.41:345
chr1	110281941	rs10735234	G	A	912.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:34,43:0.56:77
chr1	110282972	rs1332018	G	T	6428.77	.	AC=1;AF=0.500;AN=2;DB;DP=695;set=Intersection	GT:AD:AF:DP	0/1:367,318:0.46:685
chr1	110292856	rs15864	G	C	309.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:18,15:0.45:33
chr1	110295772	rs1887547	T	C	3293.77	.	AC=1;AF=0.500;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	0/1:220,177:0.45:397
chr1	110295890	rs1887548	C	G	1100.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:110,56:0.34:166
chr1	110300441	rs3818562	G	A	2566.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:126,122:0.49:248
chr1	110300504	rs10776700	A	G	10659.77	.	AC=2;AF=1.00;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	1/1:0,387:1.00:387
chr1	110304537	rs6676659	G	A	1045.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:49,42:0.46:91
chr1	110456866	rs2297706	C	A	3274.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:105,151:0.59:256
chr1	110458234	rs2275123	G	A	6008.77	.	AC=1;AF=0.500;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	0/1:176,274:0.61:450
chr1	110466338	rs333970	C	A	13021.77	.	AC=1;AF=0.500;AN=2;DB;DP=1446;set=Intersection	GT:AD:AF:DP	0/1:802,632:0.44:1434
chr1	110466466	rs1058885	T	C	10672.77	.	AC=1;AF=0.500;AN=2;DB;DP=953;set=Intersection	GT:AD:AF:DP	0/1:424,508:0.55:932
chr1	110466709	rs333971	T	C	13899.77	.	AC=2;AF=1.00;AN=2;DB;DP=513;set=Intersection	GT:AD:AF:DP	1/1:0,506:1.00:506
chr1	110466810	rs2229166	C	A	1290.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:58,58:0.50:116
chr1	110467745	rs333972	A	G	2744.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr1	110551590	.	T	TA	91.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.732;ClippingRankSum=0.000;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.937;QD=0.73;ReadPosRankSum=0.717;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:101,24:0.19:125
chr1	110558276	rs11384766	A	AC	3965.73	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr1	110580702	rs2021518	A	G	918.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.95;SOR=2.400;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	110580704	rs4494133	A	G	918.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.76;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	110581780	rs1834	T	G	7883.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr1	110584257	rs41281344	C	T	2614.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:131,121:0.48:252
chr1	110603286	rs144523285	A	AGGTGCTTCCTCCGTGGTGTCCAGGCAGG	7892.73	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr1	110612925	rs2274568	G	A	310.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	110709719	rs7527375	T	C	5885.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.56;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,161:1.00:161
chr1	110709719	.	TG	CA,CG	2892	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.39;FR=0.5000,0.5000;HP=1;HapScore=3;MGOF=0;MMLQ=28;MQ=60.0;NF=41,63;NR=37,66;PP=2892,2000;QD=20;SC=AGGAGCTGGATGCAGAGGACC;SbPval=0.37;Source=Platypus;TC=133;TCF=64;TCR=69;TR=78,129;WE=110709742;WS=110709709;set=Platypus	GT:AF:DP	0/1:0.59:133
chr1	110709720	rs12737742	G	A	1963.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.260;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=1.984;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.20;ReadPosRankSum=1.501;SOR=0.611;set=HC	GT:AD:AF:DP	0/1:69,92:0.57:161
chr1	110709734	rs41281364	G	A	1542.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:105,75:0.42:180
chr1	110716511	rs12747833	C	T	762.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:20,32:0.62:52
chr1	110735037	rs2603583	T	G	1316.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:61,51:0.46:112
chr1	110740112	.	T	C	1341.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.334;ClippingRankSum=0.000;DP=403;ExcessHet=3.0103;FS=2.569;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.39;ReadPosRankSum=0.490;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:303,93:0.23:396
chr1	110741086	rs41306175	C	T	2278.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:112,103:0.48:215
chr1	110765535	rs611587	C	G	1302.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:95,64:0.40:159
chr1	110882444	rs814771	A	G	2695.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:128,118:0.48:246
chr1	110888948	rs61787373	G	A	2802.77	.	AC=1;AF=0.500;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	0/1:205,144:0.41:349
chr1	110949566	rs12408631	G	T	290.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:32,15:0.32:47
chr1	110949720	rs6671673	C	T	1674.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:77,83:0.52:160
chr1	110949857	rs6684395	A	T	48.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:12,4:0.25:16
chr1	110950462	rs11102099	G	A	5180.77	.	AC=1;AF=0.500;AN=2;DB;DP=474;set=Intersection	GT:AD:AF:DP	0/1:219,244:0.53:463
chr1	110993990	rs4839391	G	A	2362.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:101,105:0.51:206
chr1	110998766	rs7551116	T	A	1324.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	110998854	rs7514102	G	A	4971.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr1	111059812	rs3841846	C	CGA	1410.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.162;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=2.912;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=2.279;QD=8.15;ReadPosRankSum=0.837;SOR=1.015;set=HC	GT:AD:AF:DP	0/1:117,56:0.32:173
chr1	111060669	rs1281175	T	C	3654.77	.	AC=1;AF=0.500;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	0/1:258,177:0.41:435
chr1	111060752	rs34970857	C	T	4935.77	.	AC=1;AF=0.500;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	0/1:199,229:0.54:428
chr1	111061062	rs1281174	T	C	3356.77	.	AC=1;AF=0.500;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	0/1:171,152:0.47:323
chr1	111144526	rs4839071	T	G	335.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	111390624	rs112561357	AT	A,ATT	250.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.688;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=7.16;ReadPosRankSum=-0.047;SOR=0.627;set=HC	GT:AD:AF:DP	1/2:7,13,15:0.37,0.43:35
chr1	111436857	rs1578956	TC	GT	7043.77	.	AC=1;AF=0.500;AN=2;DB;DP=346;JOINED;set=Intersection	GT:AD:AF:DP	0/1:158,180:0.53:338
chr1	111437129	rs1343817	A	C	858.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:47,37:0.44:84
chr1	111437176	rs5777031	G	GA	246.73	.	AC=1;AF=0.500;AN=2;DB;DP=29;MQ=60.37;set=Intersection	GT:AD:AF:DP	0/1:10,13:0.57:23
chr1	111441829	rs1803259	C	T	4451.77	.	AC=1;AF=0.500;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	0/1:222,216:0.49:438
chr1	111661413	rs325916	T	C	3000.77	.	AC=1;AF=0.500;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:169,144:0.46:313
chr1	111661528	rs325917	T	C	1999.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:138,104:0.43:242
chr1	111662723	rs325918	G	A	411.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:36,20:0.36:56
chr1	111742838	rs639306	G	C	1258.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr1	111770423	rs755467	T	G	1692.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:85,83:0.49:168
chr1	111773568	rs2255089	G	C	3869.77	.	AC=1;AF=0.500;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	0/1:219,179:0.45:398
chr1	111773600	rs2274232	A	G	2643.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:134,121:0.47:255
chr1	111773830	rs2147789	A	T	2119.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:150,109:0.42:259
chr1	111778187	rs2251715	A	G	433.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:22,17:0.44:39
chr1	111778241	rs2764544	C	T	2517.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr1	111778468	rs961364	G	A	3346.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:125,145:0.54:270
chr1	111778824	rs2251608	T	C	820.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:36,39:0.52:75
chr1	111783942	rs56403938	C	T	1381.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:85,68:0.44:153
chr1	111783996	rs2494007	A	G	6051.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr1	111784148	rs2764551	T	G	2387.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr1	111785929	rs8535	C	A	1408.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:54,63:0.54:117
chr1	111785930	rs1056825	T	C	1053.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:63,54:0.46:117
chr1	111826023	rs6688201	C	G	7714.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:2,282:0.99:284
chr1	111854755	rs4423003	A	C	2094.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr1	111857087	rs2786151	C	T	3611.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr1	111857107	rs56003810	A	G	952.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:118,49:0.29:167
chr1	111857120	rs3818820	C	A	1014.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:136,56:0.29:192
chr1	111857154	rs2786152	T	C	7738.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:2,272:0.99:274
chr1	111857208	rs3818822	G	A	4205.77	.	AC=1;AF=0.500;AN=2;DB;DP=478;set=Intersection	GT:AD:AF:DP	0/1:257,217:0.46:474
chr1	111857276	rs41391244	T	C	5549.77	.	AC=1;AF=0.500;AN=2;DB;DP=589;set=Intersection	GT:AD:AF:DP	0/1:300,286:0.49:586
chr1	111858291	rs2786155	T	C	2574.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr1	111858444	rs2786156	C	T	13540.77	.	AC=2;AF=1.00;AN=2;DB;DP=514;set=Intersection	GT:AD:AF:DP	1/1:0,510:1.00:510
chr1	111858499	rs6661725	A	G	9662.77	.	AC=2;AF=1.00;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	1/1:2,371:0.99:373
chr1	111858525	rs371155945	TAAATATAAGAATAAGA	T	9643.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=250;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=64.07;QD=44.65;SOR=2.071;set=HC	GT:AD:AF:DP	1/1:0,216:1.00:216
chr1	111858526	.	AAATATAAGAATAAGACACTATCCTTGGCTT	CAATATAAGAATAAGACACTATCCTTGGCTT	2915	.	AC=1;AF=0.500;AN=2;BRF=0.44;FR=1.0000,1.0000;HP=2;HapScore=1;MGOF=62;MMLQ=28;MQ=67.07;NF=3,25;NR=74,75;PP=2915,2691;QD=20;SC=TTGTCAGGCTAAATATAAGAA;SbPval=0.54;Source=Platypus;TC=80;TCF=3;TCR=77;TR=77,100;WE=111858563;WS=111858516;set=Platypus	GT:AD:AF:DP	0/1:10,100:0.91:110
chr1	111858526	.	AAATATAAGAATAAGACACTATCCTTGGCTT	A	2915	.	AC=1;AF=0.500;AN=2;BRF=0.44;FR=1.0000,1.0000;HP=2;HapScore=1;MGOF=62;MMLQ=28;MQ=67.07;NF=3,25;NR=74,75;PP=2915,2691;QD=20;SC=TTGTCAGGCTAAATATAAGAA;SbPval=0.54;Source=Platypus;TC=80;TCF=3;TCR=77;TR=77,100;WE=111858563;WS=111858516;set=Platypus	GT:AD:AF:DP	0/1:3,77:0.96:80
chr1	111858542	rs376128132	CACTATCCTTGGCTT	C	9620.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=219;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=64.62;QD=44.34;SOR=2.082;set=HC	GT:AD:AF:DP	1/1:0,217:1.00:217
chr1	111858589	rs2786157	G	T	4122.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr1	111858603	rs2786158	G	T	3535.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=67.38;QD=30.22;SOR=3.017;set=HC	GT:AD:AF:DP	1/1:0,117:1.00:117
chr1	111861714	rs2786161	T	A	5199.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:1,188:0.99:189
chr1	111861841	rs2275253	A	G	9477.77	.	AC=2;AF=1.00;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	1/1:0,362:1.00:362
chr1	111861974	rs2275254	T	C	4229.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:140,191:0.58:331
chr1	111862074	rs2820092	C	T	1120.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:78,57:0.42:135
chr1	111862952	rs2256721	T	G	10868.77	.	AC=2;AF=1.00;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	1/1:1,395:1.00:396
chr1	111890244	rs369431739	C	CT	644.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.564;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=1.710;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.191;QD=4.78;ReadPosRankSum=2.557;SOR=0.498;set=HC	GT:AD:AF:DP	0/1:77,58:0.43:135
chr1	111957097	rs7825	C	G	1901.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:85,87:0.51:172
chr1	111957311	rs10067	G	C	3446.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:134,152:0.53:286
chr1	111957693	rs2485319	A	G	3814.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:139,181:0.57:320
chr1	111964144	rs1264885	G	C	2615.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:65,114:0.64:179
chr1	111968121	rs1264887	C	T	1086.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:38,48:0.56:86
chr1	111969294	rs1264892	A	G	2349.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:143,111:0.44:254
chr1	111969432	rs1264893	C	G	855.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:45,39:0.46:84
chr1	111969719	rs1264894	A	G	4129.77	.	AC=1;AF=0.500;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	0/1:200,195:0.49:395
chr1	111985229	rs1264902	G	T	549.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.580;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.63;ReadPosRankSum=1.015;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:5,23:0.82:28
chr1	111991845	rs1270853	C	A	7121.77	.	AC=1;AF=0.500;AN=2;DB;DP=585;set=Intersection	GT:AD:AF:DP	0/1:251,326:0.56:577
chr1	111992095	rs1264899	C	T	4788.77	.	AC=1;AF=0.500;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	0/1:155,217:0.58:372
chr1	112020222	rs3831358	GC	G	983.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:23,26:0.53:49
chr1	112020224	rs115634476	C	A	992.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:23,27:0.54:50
chr1	112020238	rs2211494	A	C	2824.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr1	112028577	rs2275796	A	T	1244.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:80,61:0.43:141
chr1	112029193	rs2252739	A	G	2282.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr1	112029325	rs2800906	A	G	4023.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr1	112031654	rs10602160	AACACAC	A	2429.73	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:82,68:0.45:150
chr1	112032126	rs58712964	T	C	4256.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.040;ClippingRankSum=0.000;DB;DP=270;ExcessHet=3.0103;FS=3.441;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.12;ReadPosRankSum=-0.141;SOR=0.519;set=HC	GT:AD:AF:DP	0/1:150,114:0.43:264
chr1	112032131	rs61002431	T	G	4248.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.077;ClippingRankSum=0.000;DB;DP=278;ExcessHet=3.0103;FS=4.151;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.62;ReadPosRankSum=1.029;SOR=0.487;set=HC	GT:AD:AF:DP	0/1:157,115:0.42:272
chr1	112032205	rs7544118	C	T	1393.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:176,84:0.32:260
chr1	112032347	rs2789539	G	A	3186.77	.	AC=1;AF=0.500;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	0/1:178,155:0.47:333
chr1	112033285	rs2275797	G	C	1767.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:46,79:0.63:125
chr1	112033456	rs3831359	G	GA	1912.73	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:93,85:0.48:178
chr1	112033480	rs2275798	T	C	1307.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:66,66:0.50:132
chr1	112033515	rs2252198	T	C	1687.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.156;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.09;ReadPosRankSum=2.307;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:40,44:0.52:84
chr1	112033519	rs2252197	A	G	1690.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.025;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.40;ReadPosRankSum=1.581;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:36,43:0.54:79
chr1	112042632	rs2229155	A	G	16416.77	.	AC=2;AF=1.00;AN=2;DB;DP=615;set=Intersection	GT:AD:AF:DP	1/1:0,603:1.00:603
chr1	112106444	rs1591712	G	A	10726.77	.	AC=2;AF=1.00;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	1/1:0,411:1.00:411
chr1	112240038	rs34219774	C	CT	1069.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.366;ClippingRankSum=0.000;DB;DP=275;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=2.011;QD=4.15;ReadPosRankSum=-0.800;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:165,93:0.36:258
chr1	112269872	rs197434	G	A	24950.77	.	AC=2;AF=1.00;AN=2;DB;DP=914;set=Intersection	GT:AD:AF:DP	1/1:0,900:1.00:900
chr1	112305406	.	TA	T	948.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.638;ClippingRankSum=0.000;DP=355;ExcessHet=3.0103;FS=3.473;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.960;QD=3.27;ReadPosRankSum=-2.031;SOR=0.964;set=HC	GT:AD:AF:DP	0/1:161,129:0.44:290
chr1	112539061	rs2366125	A	G	3463.77	.	AC=1;AF=0.500;AN=2;DB;DP=484;set=Intersection	GT:AD:AF:DP	0/1:289,190:0.40:479
chr1	112991698	rs2256883	T	C	3401.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:165,164:0.50:329
chr1	112999227	rs1175641	G	A	3922.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:143,167:0.54:310
chr1	113052155	rs3790605	C	G	515.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:24,22:0.48:46
chr1	113052186	rs3790606	G	C	230.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:17,11:0.39:28
chr1	113063125	rs910697	A	G	3172.77	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:183,156:0.46:339
chr1	113083439	rs10745330	C	T	467.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:69,28:0.29:97
chr1	113098534	rs6658555	C	T	3437.77	.	AC=1;AF=0.500;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	0/1:216,172:0.44:388
chr1	113113167	rs71584748	GTATATATATATATA	G	1986.73	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:29,51:0.64:80
chr1	113196197	rs2932528	A	T	708.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.064;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.964;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.71;ReadPosRankSum=0.843;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:31,42:0.58:73
chr1	113202417	rs2932536	G	A	1589.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:68,79:0.54:147
chr1	113234456	rs2932532	G	A	5090.77	.	AC=1;AF=0.500;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	0/1:178,244:0.58:422
chr1	113239478	rs2999158	T	C	5931.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr1	113242488	rs3013431	C	T	11218.77	.	AC=2;AF=1.00;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	1/1:0,403:1.00:403
chr1	113244433	rs2279500	T	C	5714.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr1	113246229	rs937053	T	A	2301.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr1	113248365	rs954679	A	G	1865.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	113252614	rs41310100	C	A	1094.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	113254484	rs4839258	A	G	938.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	113255389	rs10857971	C	T	913.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	113255686	rs147819439	T	TTG	268.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.257;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=4.337;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.14;ReadPosRankSum=-0.339;SOR=2.694;set=HC	GT:AD:AF:DP	0/1:7,12:0.63:19
chr1	113456546	rs1049434	A	T	3887.77	.	AC=1;AF=0.500;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	0/1:208,180:0.46:388
chr1	113460676	rs149491709	CAATA	C	623.50	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.214;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.34;MQRankSum=0.500;QD=36.68;ReadPosRankSum=-0.817;SOR=4.294;set=HC	GT:AD:AF:DP	1/1:1,16:0.94:17
chr1	113471629	rs10627911	C	CT	433.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.483;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=2.041;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.57;ReadPosRankSum=0.670;SOR=0.428;set=HC	GT:AD:AF:DP	0/1:56,39:0.41:95
chr1	113616382	rs56062000	G	GA	843.73	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:20,33:0.62:53
chr1	113636924	rs1216802	T	C	2204.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr1	113652732	rs145453872	C	T	553.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:22,22:0.50:44
chr1	113652842	rs140313353	G	A	4239.77	.	AC=1;AF=0.500;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	0/1:188,211:0.53:399
chr1	113657092	rs1216793	A	C	8140.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:1,294:1.00:295
chr1	113658887	rs1216791	G	A	3176.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr1	113659065	rs10541977	ACT	A	15453.73	.	AC=2;AF=1.00;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	1/1:0,347:1.00:347
chr1	113662249	rs12568813	G	C	877.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:22,38:0.63:60
chr1	113666351	rs1728222	G	T	738.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.491;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.73;ReadPosRankSum=-1.664;SOR=0.394;set=HC	GT:AD:AF:DP	0/1:5,29:0.85:34
chr1	113666353	rs1728223	G	T	223.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.293;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.89;ReadPosRankSum=0.715;SOR=0.395;set=HC	GT:AD:AF:DP	0/1:25,13:0.34:38
chr1	114092306	rs10858004	A	G	809.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:34,38:0.53:72
chr1	114137013	rs3834733	C	CAT	768.73	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:25,21:0.46:46
chr1	114161116	rs1217200	C	A	232.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:20,13:0.39:33
chr1	114191994	rs1743594	G	A	2018.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:181,105:0.37:286
chr1	114224782	rs11438160	A	ATT	1872.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.639;ClippingRankSum=0.000;DB;DP=391;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=2.082;QD=5.52;ReadPosRankSum=-0.083;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:175,164:0.48:339
chr1	114234690	rs12138638	C	T	331.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:28,17:0.38:45
chr1	114240319	rs3835263	T	TA	4470.73	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:155,146:0.49:301
chr1	114249382	rs6698586	C	T	1527.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:122,74:0.38:196
chr1	114267347	rs1230640	C	T	2599.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:174,131:0.43:305
chr1	114280717	rs2273758	A	C	2319.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:137,104:0.43:241
chr1	114320057	.	A	G	624.77	.	AC=1;AF=0.500;AN=2;DP=47;set=Intersection	GT:AD:AF:DP	0/1:20,26:0.57:46
chr1	114339956	rs34169583	C	CTAAA	886.73	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:31,23:0.43:54
chr1	114357750	rs1217413	G	A	70.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	114372332	rs57877024	TA	T	390.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.148;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=0.929;QD=6.51;ReadPosRankSum=0.719;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:29,31:0.52:60
chr1	114372524	rs34209542	A	G	740.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:47,35:0.43:82
chr1	114377093	rs1599971	A	G	1614.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:59,75:0.56:134
chr1	114377148	rs1970559	T	C	724.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:24,33:0.58:57
chr1	114377568	rs2476601	A	G	12180.77	.	AC=2;AF=1.00;AN=2;DB;DP=478;set=Intersection	GT:AD:AF:DP	1/1:0,472:1.00:472
chr1	114394689	rs33996649	C	T	3159.77	.	AC=1;AF=0.500;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	0/1:209,159:0.43:368
chr1	114400195	rs11386228	G	GA	363.73	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:23,24:0.51:47
chr1	114401231	rs1217418	A	G	209.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:19,11:0.37:30
chr1	114401904	rs1217419	T	G	491.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:24,20:0.45:44
chr1	114423653	rs1217382	C	T	1187.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:60,57:0.49:117
chr1	114424601	rs1217381	C	T	4117.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr1	114429340	rs1746860	T	C	2725.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:130,132:0.50:262
chr1	114429461	rs2358994	G	A	538.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:23,23:0.50:46
chr1	114441525	.	T	TA	437.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.274;ClippingRankSum=0.000;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.68;ReadPosRankSum=1.197;SOR=0.843;set=HC	GT:AD:AF:DP	0/1:24,33:0.58:57
chr1	114442355	rs3838300	C	CA	590.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.431;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.49;ReadPosRankSum=-0.832;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:51,40:0.44:91
chr1	114443035	rs3789613	C	G	2721.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr1	114443899	rs17464525	G	A	4471.77	.	AC=1;AF=0.500;AN=2;DB;DP=600;set=Intersection	GT:AD:AF:DP	0/1:347,237:0.41:584
chr1	114447034	rs6661817	G	C	1032.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	114448389	rs11552449	C	T	6192.77	.	AC=1;AF=0.500;AN=2;DB;DP=589;set=Intersection	GT:AD:AF:DP	0/1:292,293:0.50:585
chr1	114449662	rs3761936	T	C	5245.77	.	AC=1;AF=0.500;AN=2;DB;DP=476;set=Intersection	GT:AD:AF:DP	0/1:214,247:0.54:461
chr1	114449826	.	GTTTTTTT	G	2358.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.084;ClippingRankSum=0.000;DP=128;ExcessHet=3.0103;FS=13.803;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.44;ReadPosRankSum=5.784;SOR=2.220;set=HC	GT:AD:AF:DP	0/1:32,78:0.71:110
chr1	114449836	.	T	A	359.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.691;ClippingRankSum=0.000;DP=99;ExcessHet=3.0103;FS=14.391;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.53;ReadPosRankSum=4.186;SOR=2.315;set=HC	GT:AD:AF:DP	0/1:29,36:0.55:65
chr1	114472218	rs1217441	A	G	2592.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr1	114495348	.	G	GT	166.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.260;ClippingRankSum=0.000;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.702;QD=1.25;ReadPosRankSum=-0.084;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:104,29:0.22:133
chr1	114504860	rs41302825	G	A	1896.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:66,80:0.55:146
chr1	114505000	rs17852555	G	A	3808.77	.	AC=1;AF=0.500;AN=2;DB;DP=495;set=Intersection	GT:AD:AF:DP	0/1:296,194:0.40:490
chr1	114508685	rs72691850	A	G	3364.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:118,139:0.54:257
chr1	114512939	rs3811018	A	T	3638.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr1	114515717	rs2358996	G	A	10355.77	.	AC=1;AF=0.500;AN=2;DB;DP=896;set=Intersection	GT:AD:AF:DP	0/1:378,510:0.57:888
chr1	114523465	rs3789614	A	G	790.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:45,39:0.46:84
chr1	114680310	rs41274114	G	A	4889.77	.	AC=1;AF=0.500;AN=2;DB;DP=466;set=Intersection	GT:AD:AF:DP	0/1:235,225:0.49:460
chr1	114940632	rs5777192	CA	C	1579.25	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.109;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=0.885;QD=12.53;ReadPosRankSum=-1.157;SOR=0.781;set=HC	GT:AD:AF:DP	0/1:19,107:0.85:126
chr1	114948281	rs6537825	A	G	15054.77	.	AC=2;AF=1.00;AN=2;DB;DP=549;set=Intersection	GT:AD:AF:DP	1/1:0,539:1.00:539
chr1	114976224	rs12132214	A	C	317.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:45,19:0.30:64
chr1	115110989	rs71090789	C	CT	71.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.479;ClippingRankSum=-0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.99;ReadPosRankSum=-0.056;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:10,8:0.44:18
chr1	115112886	.	A	T	71.77	.	AC=1;AF=0.500;AN=2;DP=16;set=Intersection	GT:AD:AF:DP	0/1:11,5:0.31:16
chr1	115128087	rs222493	A	G	545.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	115144035	rs61811019	G	A	2493.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:92,105:0.53:197
chr1	115144304	rs12730318	C	T	1241.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:71,54:0.43:125
chr1	115144703	rs28398	A	G	19609.77	.	AC=2;AF=1.00;AN=2;DB;DP=735;set=Intersection	GT:AD:AF:DP	1/1:0,722:1.00:722
chr1	115161140	rs12145066	C	T	257.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:13,13:0.50:26
chr1	115165472	rs222502	T	A	396.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	115166350	rs148413143	ATTGT	A	2389.73	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr1	115168097	rs12136548	T	C	4227.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:136,182:0.57:318
chr1	115168600	rs7541738	A	T	2693.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:152,134:0.47:286
chr1	115222434	rs761755	G	A	998.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	115238016	rs68036474	CA	C	801.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.236;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.22;ReadPosRankSum=-0.390;SOR=0.934;set=HC	GT:AD:AF:DP	0/1:22,65:0.75:87
chr1	115256669	rs969273	G	A	250.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:10,12:0.55:22
chr1	115276978	rs57342611	GA	G	1357.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.513;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=2.791;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.729;QD=6.34;ReadPosRankSum=0.145;SOR=0.498;set=HC	GT:AD:AF:DP	0/1:116,98:0.46:214
chr1	115284056	rs7537232	G	T	3025.77	.	AC=1;AF=0.500;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	0/1:209,148:0.41:357
chr1	115398044	rs60659641	GC	G	2527.73	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr1	115399940	rs360614	T	G	750.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:50,35:0.41:85
chr1	115401136	rs360615	G	A	800.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	115420905	rs360636	T	C	435.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:27,23:0.46:50
chr1	115437986	rs6661511	G	A	876.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.140;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=2.317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.07;ReadPosRankSum=-0.807;SOR=0.911;set=HC	GT:AD:AF:DP	0/1:75,49:0.40:124
chr1	115452848	rs12117860	G	A	265.78	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:1,11:0.92:12
chr1	115524216	rs12026343	C	T	411.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:11,18:0.62:29
chr1	115576023	rs10776792	A	G	11066.77	.	AC=2;AF=1.00;AN=2;DB;DP=410;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.39;SOR=0.864;set=HC	GT:AD:AF:DP	1/1:0,404:1.00:404
chr1	115576482	rs28566771	C	G	1095.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:62,52:0.46:114
chr1	115601615	rs7523818	A	G	7466.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr1	115615358	rs753189	T	C	164.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:18,8:0.31:26
chr1	115631924	rs4240540	C	T	6079.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr1	115829313	rs6330	G	A	3643.77	.	AC=1;AF=0.500;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	0/1:171,168:0.50:339
chr1	116224925	rs10923176	G	A	3408.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:102,141:0.58:243
chr1	116224940	rs10754330	C	A	4666.77	.	AC=1;AF=0.500;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	0/1:147,201:0.58:348
chr1	116225180	rs10923177	A	C	3607.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:99,141:0.59:240
chr1	116228220	rs12145661	C	T	1323.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:47,54:0.53:101
chr1	116234083	rs3811013	T	A	489.73	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:33,27:0.45:60
chr1	116243877	rs7413162	G	A	1115.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:54,49:0.48:103
chr1	116245655	rs12402684	G	C	2647.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:116,131:0.53:247
chr1	116245809	rs6667224	C	T	651.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:27,31:0.53:58
chr1	116260532	rs2997741	A	T	5658.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:145,155:0.52:300
chr1	116260544	rs3811001	C	T	5323.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:138,139:0.50:277
chr1	116260604	rs2997742	G	A	1675.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:65,73:0.53:138
chr1	116268178	rs35967913	GA	G	152.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.836;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=0.953;QD=3.55;ReadPosRankSum=-1.280;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:18,25:0.58:43
chr1	116283343	rs9428083	A	G	2615.77	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:199,131:0.40:330
chr1	116283526	rs7538337	G	A	2277.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:110,104:0.49:214
chr1	116287682	rs9428211	T	C	537.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:36,23:0.39:59
chr1	116311198	rs4074537	T	C	2692.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr1	116534852	rs4046190	C	T	1284.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:127,74:0.37:201
chr1	116534952	rs10923941	GC	TT	1342.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;JOINED;set=Intersection	GT:AD:AF:DP	0/1:14,33:0.70:47
chr1	116569530	rs2488429	G	C	2812.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr1	116577981	rs1935828	G	A	2250.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr1	116607254	rs1281748	G	T	1627.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	116609126	rs3833541	TC	T	15917.73	.	AC=2;AF=1.00;AN=2;DB;DP=471;MQ=60.07;set=Intersection	GT:AD:AF:DP	1/1:0,468:1.00:468
chr1	116655183	.	G	GA	281.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.126;ClippingRankSum=0.000;DP=139;ExcessHet=3.0103;FS=0.923;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.10;ReadPosRankSum=0.242;SOR=0.536;set=HC	GT:AD:AF:DP	0/1:96,38:0.28:134
chr1	117121865	rs12066192	G	A	1670.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:55,73:0.57:128
chr1	117122285	.	G	GTCC	1342.73	.	AC=1;AF=0.500;AN=2;DP=455;set=Intersection	GT:AD:AF:DP	0/1:207,76:0.27:283
chr1	117122288	rs647711	G	C	4764.73	.	AC=1;AF=0.500;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	0/1:195,157:0.45:352
chr1	117142531	rs631461	G	A	1305.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:57,55:0.49:112
chr1	117236970	rs614477	G	C	6756.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr1	117303162	.	A	G	4764.77	.	AC=1;AF=0.500;AN=2;DP=534;set=Intersection	GT:AD:AF:DP	0/1:286,234:0.45:520
chr1	117487270	rs56209138	G	A	230.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:6,11:0.65:17
chr1	117487710	rs10159095	AT	GA	11499.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr1	117503940	rs34625170	G	A	5277.77	.	AC=1;AF=0.500;AN=2;DB;DP=505;set=Intersection	GT:AD:AF:DP	0/1:248,248:0.50:496
chr1	117527645	rs36119404	GTCT	G	2467.73	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:62,67:0.52:129
chr1	117529458	rs10801922	G	A	12571.77	.	AC=2;AF=1.00;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	1/1:0,471:1.00:471
chr1	117544331	rs12130298	A	C	1269.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:95,60:0.39:155
chr1	117555898	rs2764849	G	A	1077.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	117559598	rs60689130	C	A	350.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:18,17:0.49:35
chr1	117559726	rs2249265	A	G	7325.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr1	117560818	rs3736908	A	G	5496.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr1	117560929	rs3736907	C	A	3712.77	.	AC=1;AF=0.500;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	0/1:245,190:0.44:435
chr1	117602960	rs2244501	C	A	5267.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr1	117605130	rs35553508	CT	C	192.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.575;ClippingRankSum=0.000;DB;DP=208;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.705;QD=1.20;ReadPosRankSum=-0.237;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:120,41:0.25:161
chr1	117618722	rs1289672	T	C	997.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	117628869	.	A	ATG	604.73	.	AC=1;AF=0.500;AN=2;DP=31;set=Intersection	GT:AD:AF:DP	0/1:6,23:0.79:29
chr1	117631391	rs1555792	T	C	10160.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	1/1:0,374:1.00:374
chr1	117633366	rs2296447	T	C	632.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	117635413	rs80076283	A	G	1448.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:81,75:0.48:156
chr1	117639828	rs11330257	TA	T	1441.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.168;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.41;MQRankSum=0.337;QD=18.97;ReadPosRankSum=-0.638;SOR=1.043;set=HC	GT:AD:AF:DP	1/1:2,74:0.97:76
chr1	117656088	rs1289658	A	G	7755.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr1	117656276	rs1290530	A	G	723.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	117660608	rs1289655	C	T	1671.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr1	117660754	rs749902	C	T	9126.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:0,327:1.00:327
chr1	117690272	rs10754339	G	A	2013.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr1	117699714	rs367840356	GAT	G	85.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.711;ClippingRankSum=-0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.14;ReadPosRankSum=-1.895;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:7,5:0.42:12
chr1	117715026	rs6657810	C	T	1753.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:100,84:0.46:184
chr1	117715987	rs140251705	A	AACAC	216.73	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:37,9:0.20:46
chr1	117944732	rs1289941	C	A	207.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:11,9:0.45:20
chr1	117957288	rs1289948	A	G	1968.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr1	118065841	rs1290558	A	G	1451.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:110,75:0.41:185
chr1	118165691	rs1630312	C	T	8734.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr1	118320644	rs1780028	A	G	196.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:16,12:0.43:28
chr1	118320859	rs1775749	T	A	2664.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:1,94:0.99:95
chr1	118321119	rs114485606	T	C	1327.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:122,67:0.35:189
chr1	118424442	rs183701902	T	C	758.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:69,43:0.38:112
chr1	118484265	rs10733098	G	A	201.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	118491215	.	G	GTT	161.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.326;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;FS=2.831;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.09;ReadPosRankSum=1.867;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:7,13:0.65:20
chr1	118501390	rs3215666	CT	C	326.87	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.157;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=7.243;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.36;ReadPosRankSum=0.477;SOR=0.164;set=HC	GT:AD:AF:DP	0/1:41,34:0.45:75
chr1	118514723	.	TA	T	181.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.809;ClippingRankSum=0.000;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.32;ReadPosRankSum=-1.380;SOR=0.599;set=HC	GT:AD:AF:DP	0/1:105,33:0.24:138
chr1	118526592	rs4347199	G	A	906.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	118548044	rs75886122	G	T	1881.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:108,96:0.47:204
chr1	118565953	rs10923472	G	A	1547.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:121,79:0.40:200
chr1	118583408	rs10923477	G	A	2536.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:189,137:0.42:326
chr1	118617274	rs1935993	C	T	5056.77	.	AC=1;AF=0.500;AN=2;DB;DP=689;set=Intersection	GT:AD:AF:DP	0/1:416,267:0.39:683
chr1	118623681	rs56768861	TACACAC	T	446.73	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:61,24:0.28:85
chr1	118628801	rs115735582	A	C	353.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:10,13:0.57:23
chr1	118634812	rs41310092	G	T	162.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:7,7:0.50:14
chr1	118644430	rs10754367	A	G	1570.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:93,80:0.46:173
chr1	119466275	rs4659129	A	G	500.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:32,25:0.44:57
chr1	119927368	.	T	C	720.77	.	AC=1;AF=0.500;AN=2;DP=50;set=Intersection	GT:AD:AF:DP	0/1:22,28:0.56:50
chr1	120165826	rs12076924	C	T	17844.77	.	AC=2;AF=1.00;AN=2;DB;DP=677;set=Intersection	GT:AD:AF:DP	1/1:0,665:1.00:665
chr1	120166681	rs12067843	G	A	13780.77	.	AC=2;AF=1.00;AN=2;DB;DP=523;set=Intersection	GT:AD:AF:DP	1/1:0,515:1.00:515
chr1	120267505	rs483180	C	G	14294.77	.	AC=2;AF=1.00;AN=2;DB;DP=542;set=Intersection	GT:AD:AF:DP	1/1:2,534:1.00:536
chr1	120267597	rs3838425	GC	G	6778.73	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr1	120296033	.	AAC	A,AACAC	422.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=61;set=Intersection	GT:AF:DP	1/2:0.52,0.39:23
chr1	120300054	rs1992376	G	A	4420.77	.	AC=1;AF=0.500;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	0/1:169,210:0.55:379
chr1	120336785	rs1052972	C	T	5207.77	.	AC=1;AF=0.500;AN=2;DB;DP=534;set=Intersection	GT:AD:AF:DP	0/1:269,259:0.49:528
chr1	120336876	rs699778	T	G	2533.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:111,111:0.50:222
chr1	120337384	rs947270	T	C	488.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:27,22:0.45:49
chr1	120337403	rs947271	A	G	363.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:19,16:0.46:35
chr1	120341256	rs71672737	G	A	2429.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:120,113:0.48:233
chr1	120378678	rs3009182	C	T	6113.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr1	120380008	rs3009184	T	A	3111.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr1	120381686	rs5777416	G	GT,GTGTGAGTCA	3006.73	.	AC=2,0;AF=1.00,0.00;ALERT;AN=2;DB;DP=58;set=Intersection	GT:AF:DP	1/1:1.00:58
chr1	120381687	.	G	C	1142	.	AC=2;AF=1.00;AN=2;BRF=0.23;FR=1.0000;HP=1;HapScore=1;MGOF=1;MMLQ=28;MQ=60.0;NF=47;NR=1;PP=1142;QD=24.5160669281;SC=TGATTATATGGAGCACCTAGC;SbPval=0.98;Source=Platypus;TC=71;TCF=65;TCR=6;TR=48;WE=120381695;WS=120381682;set=Platypus	GT:AD:AF:DP	1/1:23,48:0.68:71
chr1	120381687	rs34302627	G	GTGAGTCAC	3006.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=52.75;SOR=5.247;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	120384205	rs2994820	A	G	1593.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr1	120387120	rs12405228	G	A	2167.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr1	120458270	rs75831573	G	C	2551.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:213,131:0.38:344
chr1	120467876	rs41302079	G	A	879.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:53,45:0.46:98
chr1	120469077	rs17258579	T	C	657.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:24,28:0.54:52
chr1	120478285	rs5025718	T	C	3710.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr1	120480394	rs2453057	T	C	1005.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	120512104	rs2493409	T	C	3207.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr1	120539331	rs2124109	C	T	3656.77	.	AC=1;AF=0.500;AN=2;DB;DP=840;set=Intersection	GT:AD:AF:DP	0/1:611,227:0.27:838
chr1	120611554	rs75248693	TT	CG	7542.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.233;ClippingRankSum=0.000;DB;DP=698;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=48.77;MQRankSum=-12.850;QD=10.81;ReadPosRankSum=-2.417;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:485,213:0.31:698
chr1	120611715	rs2794167	A	G	948.77	.	AC=1;AF=0.500;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	0/1:260,66:0.20:326
chr1	120611758	rs61790276	G	A	839.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.352;ClippingRankSum=0.000;DB;DP=211;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.13;MQRankSum=1.218;QD=4.00;ReadPosRankSum=2.830;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:159,51:0.24:210
chr1	120611830	rs61790277	G	A	574.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.521;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=0.749;MLEAC=1;MLEAF=0.500;MQ=52.66;MQRankSum=-0.129;QD=4.02;ReadPosRankSum=-1.832;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:108,35:0.24:143
chr1	120611876	rs11801062	C	T	501.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:101,30:0.23:131
chr1	120611964	rs11810554	G	C	859.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:124,51:0.29:175
chr1	120612002	.	CGG	C	2087	.	AC=1;AF=0.500;AN=2;BRF=0.5;FR=0.5000;HP=5;HapScore=1;MGOF=71;MMLQ=24;MQ=49.84;NF=18;NR=21;PP=2087;QD=54.3846153846;SC=CACAGCAGAGCGGGGCGCAGG;SbPval=0.13;Source=Platypus;TC=104;TCF=35;TCR=69;TR=39;WE=120612014;WS=120611992;set=Platypus	GT:AD:AF:DP	1/0:65,39:0.38:104
chr1	120612006	rs4021006	G	A	975.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.533;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=1.977;MLEAC=1;MLEAF=0.500;MQ=57.53;MQRankSum=-1.855;QD=5.33;ReadPosRankSum=0.348;SOR=0.828;set=HC	GT:AD:AF:DP	0/1:127,56:0.31:183
chr1	120612040	.	T	TCCTCCGCCG	1270.73	.	AC=1;AF=0.500;AN=2;DP=208;set=Intersection	GT:AD:AF:DP	0/1:140,43:0.23:183
chr1	120612154	rs56375229	C	G	1327.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.918;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=3.473;MLEAC=1;MLEAF=0.500;MQ=54.10;MQRankSum=-3.952;QD=9.35;ReadPosRankSum=0.497;SOR=0.414;set=HC	GT:AD:AF:DP	0/1:102,40:0.28:142
chr1	120612163	rs55899574	C	A	1339.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.150;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=5.995;MLEAC=1;MLEAF=0.500;MQ=53.84;MQRankSum=-3.655;QD=9.57;ReadPosRankSum=0.164;SOR=0.331;set=HC	GT:AD:AF:DP	0/1:100,40:0.29:140
chr1	120612168	rs11801102	C	T	308.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.591;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=11.827;MLEAC=1;MLEAF=0.500;MQ=53.56;MQRankSum=-3.043;QD=2.30;ReadPosRankSum=0.163;SOR=1.965;set=HC	GT:AD:AF:DP	0/1:109,25:0.19:134
chr1	120612194	rs79247096	C	G	174.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.949;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=1.004;MLEAC=1;MLEAF=0.500;MQ=53.34;MQRankSum=-1.197;QD=1.82;ReadPosRankSum=1.643;SOR=0.538;set=HC	GT:AD:AF:DP	0/1:77,19:0.20:96
chr1	120612223	rs372622310	AGCC	A	424.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.618;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=1.209;MLEAC=1;MLEAF=0.500;MQ=52.93;MQRankSum=-0.882;QD=5.90;ReadPosRankSum=-0.671;SOR=0.458;set=HC	GT:AD:AF:DP	0/1:56,16:0.22:72
chr1	120612265	rs375584849	A	G	458.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:25,17:0.40:42
chr1	120612269	.	A	G	38.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.854;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.90;MQRankSum=-2.627;QD=1.02;ReadPosRankSum=-1.163;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:32,6:0.16:38
chr1	121115761	rs150166046	T	G	760.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.549;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=12.063;MLEAC=1;MLEAF=0.500;MQ=47.12;MQRankSum=-0.742;QD=8.09;ReadPosRankSum=-0.451;SOR=0.046;set=HC	GT:AD:AF:DP	0/1:59,35:0.37:94
chr1	121115786	rs199825051	C	A	474.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.850;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=39.994;MLEAC=1;MLEAF=0.500;MQ=47.13;MQRankSum=-4.373;QD=2.93;ReadPosRankSum=2.492;SOR=5.249;set=HC	GT:AD:AF:DP	0/1:123,39:0.24:162
chr1	121116121	rs201302047	T	C	63.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.546;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=6.814;MLEAC=1;MLEAF=0.500;MQ=47.36;MQRankSum=-2.566;QD=1.10;ReadPosRankSum=-0.036;SOR=0.116;set=HC	GT:AD:AF:DP	0/1:48,10:0.17:58
chr1	121116647	rs2772072	T	A	1022.73	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:161,75:0.32:236
chr1	121116678	rs61806689	C	T	4359.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.808;ClippingRankSum=0.000;DB;DP=435;ExcessHet=3.0103;FS=11.188;MLEAC=1;MLEAF=0.500;MQ=54.80;MQRankSum=-2.163;QD=10.02;ReadPosRankSum=0.271;SOR=1.520;set=HC	GT:AD:AF:DP	0/1:308,127:0.29:435
chr1	121116688	rs61806690	A	G	4576.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.349;ClippingRankSum=0.000;DB;DP=490;ExcessHet=3.0103;FS=6.926;MLEAC=1;MLEAF=0.500;MQ=54.41;MQRankSum=-3.751;QD=9.34;ReadPosRankSum=0.039;SOR=1.225;set=HC	GT:AD:AF:DP	0/1:344,146:0.30:490
chr1	121116733	rs61806691	A	G	1743.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.263;ClippingRankSum=0.000;DB;DP=660;ExcessHet=3.0103;FS=6.456;MLEAC=1;MLEAF=0.500;MQ=54.08;MQRankSum=-12.711;QD=2.65;ReadPosRankSum=4.421;SOR=0.796;set=HC	GT:AD:AF:DP	0/1:512,147:0.22:659
chr1	121116933	rs79097880	T	C	1291.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:66,54:0.45:120
chr1	121116953	rs78187610	A	G	851.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:41,34:0.45:75
chr1	121124501	rs201210511	C	A	60.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.200;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=1.427;MLEAC=1;MLEAF=0.500;MQ=48.65;MQRankSum=-1.259;QD=1.05;ReadPosRankSum=1.177;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:49,9:0.16:58
chr1	121124514	rs201833112	G	A	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.894;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=44.93;MQRankSum=-0.866;QD=0.69;ReadPosRankSum=0.954;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:47,8:0.15:55
chr1	121310385	rs146140447	A	C	400.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:15,16:0.52:31
chr1	144013853	rs6600697	T	C	3698.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.551;ClippingRankSum=0.000;DB;DP=569;ExcessHet=3.0103;FS=2.218;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.57;ReadPosRankSum=1.452;SOR=0.902;set=HC	GT:AD:AF:DP	0/1:441,122:0.22:563
chr1	144013865	rs6600696	T	G	4038.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.678;ClippingRankSum=0.000;DB;DP=627;ExcessHet=3.0103;FS=2.151;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.51;ReadPosRankSum=0.300;SOR=0.934;set=HC	GT:AD:AF:DP	0/1:478,142:0.23:620
chr1	144014051	rs1884147	G	A	3281.77	.	AC=1;AF=0.500;AN=2;DB;DP=612;set=Intersection	GT:AD:AF:DP	0/1:409,188:0.31:597
chr1	144014068	rs1884146	T	C	6841.77	.	AC=1;AF=0.500;AN=2;DB;DP=503;set=Intersection	GT:AD:AF:DP	0/1:174,320:0.65:494
chr1	144052641	.	CAA	C	614.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.263;ClippingRankSum=0.000;DP=122;ExcessHet=3.0103;FS=5.145;MLEAC=1;MLEAF=0.500;MQ=58.86;MQRankSum=1.428;QD=6.91;ReadPosRankSum=1.198;SOR=1.193;set=HC	GT:AD:AF:DP	0/1:52,37:0.42:89
chr1	144680070	rs150219082	T	C	319.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.40;QD=29.07;SOR=3.442;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	144854412	rs77812232	A	C	536.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:63,27:0.30:90
chr1	144854491	rs2798856	T	G	2800.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.927;ClippingRankSum=0.000;DB;DP=257;ExcessHet=3.0103;FS=2.335;MLEAC=1;MLEAF=0.500;MQ=57.89;MQRankSum=3.426;QD=10.94;ReadPosRankSum=-0.567;SOR=0.870;set=HC	GT:AD:AF:DP	0/1:175,81:0.32:256
chr1	144854497	rs2653676	A	G	2842.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.927;ClippingRankSum=0.000;DB;DP=270;ExcessHet=3.0103;FS=3.781;MLEAC=1;MLEAF=0.500;MQ=57.99;MQRankSum=3.237;QD=10.61;ReadPosRankSum=0.453;SOR=0.949;set=HC	GT:AD:AF:DP	0/1:187,81:0.30:268
chr1	144854501	rs142453097	CCT	C	1325.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.117;ClippingRankSum=0.000;DB;DP=279;ExcessHet=3.0103;FS=3.654;MLEAC=1;MLEAF=0.500;MQ=58.04;MQRankSum=2.777;QD=4.77;ReadPosRankSum=0.342;SOR=0.979;set=HC	GT:AD:AF:DP	0/1:228,50:0.18:278
chr1	144854528	rs78461771	A	G	2498.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.000;ClippingRankSum=0.000;DB;DP=375;ExcessHet=3.0103;FS=2.733;MLEAC=1;MLEAF=0.500;MQ=58.35;MQRankSum=-15.142;QD=6.68;ReadPosRankSum=-1.020;SOR=0.543;set=HC	GT:AD:AF:DP	0/1:292,82:0.22:374
chr1	144854537	rs3851872	T	C	2699.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.906;ClippingRankSum=0.000;DB;DP=389;ExcessHet=3.0103;FS=0.912;MLEAC=1;MLEAF=0.500;MQ=58.47;MQRankSum=-14.484;QD=6.94;ReadPosRankSum=-3.210;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:298,91:0.23:389
chr1	144854581	rs78371650	T	C	5260.77	.	AC=1;AF=0.500;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	0/1:217,186:0.46:403
chr1	144854594	rs79028512	G	T	2630.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.239;ClippingRankSum=0.000;DB;DP=373;ExcessHet=3.0103;FS=1.502;MLEAC=1;MLEAF=0.500;MQ=58.62;MQRankSum=-13.296;QD=7.05;ReadPosRankSum=3.686;SOR=0.806;set=HC	GT:AD:AF:DP	0/1:289,84:0.23:373
chr1	144854597	rs3851873	T	C	7400.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.617;ClippingRankSum=0.000;DB;DP=360;ExcessHet=3.0103;FS=1.259;MLEAC=1;MLEAF=0.500;MQ=58.63;MQRankSum=-6.419;QD=20.67;ReadPosRankSum=2.486;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:168,190:0.53:358
chr1	144854598	rs3863691	C	T	3624.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.473;ClippingRankSum=0.000;DB;DP=356;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.61;MQRankSum=4.742;QD=10.24;ReadPosRankSum=-0.502;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:249,105:0.30:354
chr1	144859720	rs678786	G	C	715.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:38,32:0.46:70
chr1	144860026	rs1699819	G	C	2223.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:90,100:0.53:190
chr1	144864277	rs139257887	G	A	1308.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.114;ClippingRankSum=0.000;DB;DP=322;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.57;MQRankSum=0.957;QD=4.08;ReadPosRankSum=0.655;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:233,88:0.27:321
chr1	144865850	rs1613780	G	T	4899.77	.	AC=1;AF=0.500;AN=2;DB;DP=542;set=Intersection	GT:AD:AF:DP	0/1:287,245:0.46:532
chr1	144866509	rs924667	G	A	3157.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:152,146:0.49:298
chr1	144866643	rs1620560	G	A	14909.77	.	AC=1;AF=0.500;AN=2;DB;DP=926;set=Intersection	GT:AD:AF:DP	0/1:505,417:0.45:922
chr1	144866662	rs1064044	T	C	14327.77	.	AC=1;AF=0.500;AN=2;DB;DP=844;set=Intersection	GT:AD:AF:DP	0/1:454,383:0.46:837
chr1	144868170	rs1628310	C	T	3249.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:174,153:0.47:327
chr1	144868204	rs1747951	A	C	1993.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:75,78:0.51:153
chr1	144871738	rs1698605	C	A	913.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;MQ=59.92;set=Intersection	GT:AD:AF:DP	0/1:21,24:0.53:45
chr1	144871755	rs1778159	A	T	1031.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:25,29:0.54:54
chr1	144871782	rs1778158	A	G	864.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:37,40:0.52:77
chr1	144871889	rs1698606	A	C	1441.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:72,69:0.49:141
chr1	144873818	rs1610566	A	G	1521.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:75,62:0.45:137
chr1	144873840	rs1627335	A	G	2003.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:119,90:0.43:209
chr1	144873887	rs1699787	C	T	3861.77	.	AC=1;AF=0.500;AN=2;DB;DP=448;set=Intersection	GT:AD:AF:DP	0/1:245,193:0.44:438
chr1	144873962	rs11341221	CT	C	3188.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.676;ClippingRankSum=0.000;DB;DP=824;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=3.085;QD=3.91;ReadPosRankSum=1.277;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:674,142:0.17:816
chr1	144874038	rs1419160	T	C	3620.77	.	AC=1;AF=0.500;AN=2;DB;DP=466;set=Intersection	GT:AD:AF:DP	0/1:278,180:0.39:458
chr1	144874070	rs1610565	C	T	1849.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;MQ=59.85;set=Intersection	GT:AD:AF:DP	0/1:161,93:0.37:254
chr1	144874088	rs1419158	G	C	1411.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:106,63:0.37:169
chr1	144874641	rs1610771	G	C	1733.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:66,74:0.53:140
chr1	144874760	rs1610774	T	C	4283.77	.	AC=1;AF=0.500;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	0/1:204,195:0.49:399
chr1	144874815	rs1778155	T	C	1333.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.168;ClippingRankSum=0.000;DB;DP=322;ExcessHet=3.0103;FS=0.958;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.17;ReadPosRankSum=-0.329;SOR=0.605;set=HC	GT:AD:AF:DP	0/1:232,88:0.28:320
chr1	144874950	rs1747957	G	A	1539.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:62,69:0.53:131
chr1	144877176	rs2762875	C	T	1191.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:88,58:0.40:146
chr1	144877366	rs1807092	A	G	1499.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:50,69:0.58:119
chr1	144877390	rs1807093	G	A	1362.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:33,57:0.63:90
chr1	144879264	rs2798901	A	G	6412.77	.	AC=1;AF=0.500;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	0/1:154,294:0.66:448
chr1	144879375	rs1747958	T	C	3556.77	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:158,165:0.51:323
chr1	144880832	rs12568796	T	C	1435.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:200,88:0.31:288
chr1	144881711	rs937714	T	G	225.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.053;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=2.471;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.63;ReadPosRankSum=-1.226;SOR=0.391;set=HC	GT:AD:AF:DP	0/1:68,18:0.21:86
chr1	144882581	rs1699836	A	G	3207.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:116,131:0.53:247
chr1	144882823	rs1698647	C	T	13214.77	.	AC=1;AF=0.500;AN=2;DB;DP=1361;set=Intersection	GT:AD:AF:DP	0/1:692,650:0.48:1342
chr1	144882912	rs1698646	G	T	1456.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.226;ClippingRankSum=0.000;DB;DP=422;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.49;ReadPosRankSum=0.521;SOR=0.615;set=HC	GT:AD:AF:DP	0/1:322,95:0.23:417
chr1	144886063	rs1625285	T	C	1147.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:90,56:0.38:146
chr1	144886092	rs1343472	C	T	1885.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:115,90:0.44:205
chr1	144886197	rs1698624	A	T	2613.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:198,132:0.40:330
chr1	144886409	rs1620507	A	C	801.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:43,33:0.43:76
chr1	144890833	rs11447	T	C	1271.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:71,58:0.45:129
chr1	144892089	rs1614098	G	T	1091.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:49,53:0.52:102
chr1	144892149	rs1698709	G	A	2396.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:111,118:0.52:229
chr1	144892368	rs1698708	A	T	1095.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.698;ClippingRankSum=0.000;DB;DP=254;ExcessHet=3.0103;FS=8.792;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.35;ReadPosRankSum=0.493;SOR=1.301;set=HC	GT:AD:AF:DP	0/1:189,63:0.25:252
chr1	144892423	rs200279717	G	A	2219.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.417;ClippingRankSum=0.000;DB;DP=605;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.72;ReadPosRankSum=0.900;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:448,148:0.25:596
chr1	144895460	rs1698703	C	T	461.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.135;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=1.620;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.90;ReadPosRankSum=0.055;SOR=0.516;set=HC	GT:AD:AF:DP	0/1:124,35:0.22:159
chr1	144905992	rs373352718	TA	T	73.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.236;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=0.000;QD=1.54;ReadPosRankSum=0.123;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:35,13:0.27:48
chr1	144910082	rs638780	A	G	1828.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.569;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=1.074;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=0.000;QD=8.67;ReadPosRankSum=-2.221;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:112,99:0.47:211
chr1	144912153	rs1628172	A	G	1215.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:48,54:0.53:102
chr1	144912233	rs1629011	C	T	1802.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;MQ=59.99;set=Intersection	GT:AD:AF:DP	0/1:89,86:0.49:175
chr1	144915412	rs1698684	T	C	1388.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.088;ClippingRankSum=0.000;DB;DP=333;ExcessHet=3.0103;FS=3.021;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.31;ReadPosRankSum=-0.427;SOR=0.889;set=HC	GT:AD:AF:DP	0/1:238,84:0.26:322
chr1	144915561	rs1778111	G	A	3838.77	.	AC=1;AF=0.500;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	0/1:209,188:0.47:397
chr1	144915624	rs1778112	G	A	1595.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:84,71:0.46:155
chr1	144916676	rs1698683	C	T	1860.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.545;ClippingRankSum=0.000;DB;DP=759;ExcessHet=3.0103;FS=0.655;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.47;ReadPosRankSum=1.159;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:597,155:0.21:752
chr1	144916748	rs1747930	C	G	4824.77	.	AC=1;AF=0.500;AN=2;DB;DP=505;set=Intersection	GT:AD:AF:DP	0/1:260,234:0.47:494
chr1	144917546	rs1698682	A	G	2108.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:123,105:0.46:228
chr1	144917827	rs11295415	CA	C	414.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.181;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.38;MQRankSum=0.160;QD=3.29;ReadPosRankSum=0.239;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:103,23:0.18:126
chr1	144917841	rs1698681	T	C	1230.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:90,61:0.40:151
chr1	144918034	rs2655804	A	G	482.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:61,25:0.29:86
chr1	144918957	rs1061308	T	A	5093.77	.	AC=1;AF=0.500;AN=2;DB;DP=616;set=Intersection	GT:AD:AF:DP	0/1:351,259:0.42:610
chr1	144919008	rs11296953	AC	A	1847.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.526;ClippingRankSum=0.000;DB;DP=515;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=4.030;QD=3.73;ReadPosRankSum=1.510;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:399,96:0.19:495
chr1	144919094	rs1698680	C	T	1210.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:68,54:0.44:122
chr1	144922109	rs1343469	A	G	11593.77	.	AC=1;AF=0.500;AN=2;DB;DP=1275;set=Intersection	GT:AD:AF:DP	0/1:712,551:0.44:1263
chr1	144922171	rs1343470	C	T	13234.77	.	AC=1;AF=0.500;AN=2;DB;DP=1537;set=Intersection	GT:AD:AF:DP	0/1:846,676:0.44:1522
chr1	144922523	rs2455994	C	T	2300.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.525;ClippingRankSum=0.000;DB;DP=1068;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.17;ReadPosRankSum=0.159;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:849,209:0.20:1058
chr1	144922583	rs1359300	G	A	8983.77	.	AC=1;AF=0.500;AN=2;DB;DP=1119;set=Intersection	GT:AD:AF:DP	0/1:645,462:0.42:1107
chr1	144923823	rs11268079	TAGGAAGAAACGGCA	T	6706.73	.	AC=1;AF=0.500;AN=2;DB;DP=650;MQ=60.02;set=Intersection	GT:AD:AF:DP	0/1:353,187:0.35:540
chr1	144923887	rs12140706	T	A	705.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.516;ClippingRankSum=0.000;DB;DP=323;ExcessHet=3.0103;FS=1.140;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.20;ReadPosRankSum=-0.651;SOR=0.790;set=HC	GT:AD:AF:DP	0/1:254,67:0.21:321
chr1	144930571	rs2762866	C	A	2081.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:127,100:0.44:227
chr1	144930596	rs2762867	C	A	2840.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:158,136:0.46:294
chr1	144930940	rs2147326	T	C	6562.77	.	AC=1;AF=0.500;AN=2;DB;DP=663;set=Intersection	GT:AD:AF:DP	0/1:350,302:0.46:652
chr1	144931087	rs41315684	T	C	2423.77	.	AC=1;AF=0.500;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	0/1:304,134:0.31:438
chr1	144931330	rs2762745	C	T	11049.77	.	AC=1;AF=0.500;AN=2;DB;DP=1169;set=Intersection	GT:AD:AF:DP	0/1:626,532:0.46:1158
chr1	144931392	rs2798893	G	A	8611.77	.	AC=1;AF=0.500;AN=2;DB;DP=936;set=Intersection	GT:AD:AF:DP	0/1:510,419:0.45:929
chr1	144931461	rs41315685	A	T	2991.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.171;ClippingRankSum=0.000;DB;DP=847;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.57;ReadPosRankSum=0.483;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:637,201:0.24:838
chr1	144931727	rs2985363	G	A	587.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.471;ClippingRankSum=0.000;DB;DP=269;ExcessHet=3.0103;FS=4.631;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.22;ReadPosRankSum=0.874;SOR=1.095;set=HC	GT:AD:AF:DP	0/1:218,47:0.18:265
chr1	144946510	rs2488977	C	T	5045.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr1	144946768	rs2762733	G	A	2676.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:140,123:0.47:263
chr1	144946876	rs2798887	C	T	628.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.383;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=2.191;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.99;ReadPosRankSum=-1.836;SOR=0.201;set=HC	GT:AD:AF:DP	0/1:18,19:0.51:37
chr1	144951959	rs142985095	T	C	1815.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.795;ClippingRankSum=0.000;DB;DP=567;ExcessHet=3.0103;FS=0.666;MLEAC=1;MLEAF=0.500;MQ=56.75;MQRankSum=3.230;QD=3.22;ReadPosRankSum=-1.582;SOR=0.790;set=HC	GT:AD:AF:DP	0/1:436,128:0.23:564
chr1	144951973	rs77471170	T	C	9778.77	.	AC=1;AF=0.500;AN=2;DB;DP=733;set=Intersection	GT:AD:AF:DP	0/1:295,432:0.59:727
chr1	144952078	rs71220421	C	A	5501.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.975;ClippingRankSum=0.000;DB;DP=1073;ExcessHet=3.0103;FS=1.205;MLEAC=1;MLEAF=0.500;MQ=56.56;MQRankSum=-1.484;QD=5.13;ReadPosRankSum=-0.020;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:748,324:0.30:1072
chr1	144952220	rs139438772	C	T	2435.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.335;ClippingRankSum=0.000;DB;DP=482;ExcessHet=3.0103;FS=1.328;MLEAC=1;MLEAF=0.500;MQ=47.02;MQRankSum=-8.609;QD=5.09;ReadPosRankSum=-0.530;SOR=0.542;set=HC	GT:AD:AF:DP	0/1:338,141:0.29:479
chr1	144955317	rs369502630	G	A	7940.77	.	AC=1;AF=0.500;AN=2;DB;DP=847;set=Intersection	GT:AD:AF:DP	0/1:428,403:0.48:831
chr1	144994654	rs147804991	G	A	722.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.066;ClippingRankSum=0.000;DB;DP=935;ExcessHet=3.0103;FS=0.783;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.78;ReadPosRankSum=-1.332;SOR=0.553;set=HC	GT:AD:AF:DP	0/1:795,131:0.14:926
chr1	144994658	rs1664022	C	A	7419.77	.	AC=1;AF=0.500;AN=2;DB;DP=973;set=Intersection	GT:AD:AF:DP	0/1:584,380:0.39:964
chr1	144994861	rs2442640	C	T	28122.77	.	AC=2;AF=1.00;AN=2;DB;DP=1028;set=Intersection	GT:AD:AF:DP	1/1:0,1010:1.00:1010
chr1	145014103	rs1778711	G	C	1899.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:150,81:0.35:231
chr1	145014186	.	GAA	G	5605.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.109;ClippingRankSum=0.000;DP=732;ExcessHet=3.0103;FS=4.995;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=2.708;QD=7.93;ReadPosRankSum=1.052;SOR=0.404;set=HC	GT:AD:AF:DP	0/1:530,177:0.25:707
chr1	145014210	rs1778710	G	A	9369.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.740;ClippingRankSum=0.000;DB;DP=1085;ExcessHet=3.0103;FS=3.000;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=2.937;QD=8.68;ReadPosRankSum=-0.795;SOR=0.467;set=HC	GT:AD:AF:DP	0/1:800,279:0.26:1079
chr1	145014218	rs1778709	G	A	9930.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.132;ClippingRankSum=0.000;DB;DP=1206;ExcessHet=3.0103;FS=2.079;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=2.907;QD=8.28;ReadPosRankSum=-1.227;SOR=0.497;set=HC	GT:AD:AF:DP	0/1:885,315:0.26:1200
chr1	145014263	rs1778708	C	T	11497.77	.	AC=1;AF=0.500;AN=2;DB;DP=1607;MQ=60.02;set=Intersection	GT:AD:AF:DP	0/1:981,610:0.38:1591
chr1	145014394	rs1107089	C	T	6436.77	.	AC=1;AF=0.500;AN=2;DB;DP=557;set=Intersection	GT:AD:AF:DP	0/1:344,194:0.36:538
chr1	145014411	rs1778707	T	C	5872.77	.	AC=1;AF=0.500;AN=2;DB;DP=443;MQ=60.02;set=Intersection	GT:AD:AF:DP	0/1:268,163:0.38:431
chr1	145015877	rs77741369	G	T	5136.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.158;ClippingRankSum=0.000;DB;DP=1356;ExcessHet=3.0103;FS=0.606;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.83;ReadPosRankSum=0.305;SOR=0.812;set=HC	GT:AD:AF:DP	0/1:995,347:0.26:1342
chr1	145016020	rs657162	T	G	29287.77	.	AC=2;AF=1.00;AN=2;DB;DP=1059;set=Intersection	GT:AD:AF:DP	1/1:0,1049:1.00:1049
chr1	145016035	rs80291027	A	C	3489.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.676;ClippingRankSum=0.000;DB;DP=881;ExcessHet=3.0103;FS=0.627;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=-0.587;QD=4.33;ReadPosRankSum=2.103;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:598,208:0.26:806
chr1	145017784	rs11300211	CT	C	106.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.573;ClippingRankSum=-0.000;DB;DP=19;ExcessHet=3.0103;FS=2.363;MLEAC=1;MLEAF=0.500;MQ=59.39;MQRankSum=-0.000;QD=7.62;ReadPosRankSum=-0.181;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:5,9:0.64:14
chr1	145017851	rs2596284	T	C	755.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.560;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=3.752;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=0.000;QD=7.00;ReadPosRankSum=-0.077;SOR=1.119;set=HC	GT:AD:AF:DP	0/1:69,39:0.36:108
chr1	145018023	rs2799192	G	T	2121.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:182,112:0.38:294
chr1	145021024	rs1778692	G	C	3955.77	.	AC=1;AF=0.500;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	0/1:217,178:0.45:395
chr1	145038686	rs67176560	AG	A	207.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.511;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=3.537;QD=1.07;ReadPosRankSum=-1.683;SOR=0.538;set=HC	GT:AD:AF:DP	0/1:167,27:0.14:194
chr1	145038736	rs1663882	C	G	2306.77	.	AC=1;AF=0.500;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	0/1:224,128:0.36:352
chr1	145038815	rs2442664	A	G	19157.77	.	AC=2;AF=1.00;AN=2;DB;DP=745;set=Intersection	GT:AD:AF:DP	1/1:1,734:1.00:735
chr1	145038952	rs1663881	C	T	6695.77	.	AC=1;AF=0.500;AN=2;DB;DP=837;set=Intersection	GT:AD:AF:DP	0/1:492,325:0.40:817
chr1	145039026	rs1663880	T	C	552.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.290;ClippingRankSum=0.000;DB;DP=426;ExcessHet=3.0103;FS=1.644;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.31;ReadPosRankSum=1.079;SOR=0.516;set=HC	GT:AD:AF:DP	0/1:353,69:0.16:422
chr1	145039562	rs1663878	C	T	7447.77	.	AC=1;AF=0.500;AN=2;DB;DP=945;set=Intersection	GT:AD:AF:DP	0/1:569,371:0.39:940
chr1	145039633	rs2762750	C	T	7659.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.803;ClippingRankSum=0.000;DB;DP=1795;ExcessHet=3.0103;FS=0.595;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.30;ReadPosRankSum=0.024;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:1309,474:0.27:1783
chr1	145039821	rs7554603	C	A	829.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.326;ClippingRankSum=0.000;DB;DP=441;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.92;ReadPosRankSum=2.571;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:385,48:0.11:433
chr1	145074882	rs3845334	G	T	45.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.585;ClippingRankSum=0.000;DB;DP=273;ExcessHet=3.0103;FS=4.001;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.17;ReadPosRankSum=-1.108;SOR=0.364;set=HC	GT:AD:AF:DP	0/1:239,32:0.12:271
chr1	145074939	rs1663854	T	C	4528.77	.	AC=1;AF=0.500;AN=2;DB;DP=593;set=Intersection	GT:AD:AF:DP	0/1:361,230:0.39:591
chr1	145075208	rs6424335	T	A	1743.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:169,91:0.35:260
chr1	145075519	rs2596337	G	C	835.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:39,39:0.50:78
chr1	145075683	rs2762779	C	T	3327.77	.	AC=1;AF=0.500;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	0/1:295,174:0.37:469
chr1	145075854	rs1663853	G	C	6120.77	.	AC=1;AF=0.500;AN=2;DB;DP=852;set=Intersection	GT:AD:AF:DP	0/1:513,325:0.39:838
chr1	145075903	rs2596336	C	T	3236.77	.	AC=1;AF=0.500;AN=2;DB;DP=721;set=Intersection	GT:AD:AF:DP	0/1:512,200:0.28:712
chr1	145075923	rs6656135	C	T	2921.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.354;ClippingRankSum=0.000;DB;DP=590;ExcessHet=3.0103;FS=1.236;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.99;ReadPosRankSum=0.609;SOR=0.574;set=HC	GT:AD:AF:DP	0/1:413,173:0.30:586
chr1	145103844	rs2590144	G	A	2294.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.685;ClippingRankSum=0.000;DB;DP=479;ExcessHet=3.0103;FS=1.340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.83;ReadPosRankSum=0.386;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:344,131:0.28:475
chr1	145103928	rs2596251	G	A	1082.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.485;ClippingRankSum=0.000;DB;DP=1162;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.94;ReadPosRankSum=-2.332;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:982,175:0.15:1157
chr1	145103947	rs2794062	T	C	5322.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.447;ClippingRankSum=0.000;DB;DP=1178;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.55;ReadPosRankSum=-0.947;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:842,329:0.28:1171
chr1	145104052	.	AGT	A	3651.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.832;ClippingRankSum=0.000;DP=418;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.69;ReadPosRankSum=-0.798;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:266,111:0.29:377
chr1	145109430	rs2442653	A	T	1539.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.329;ClippingRankSum=0.000;DB;DP=398;ExcessHet=3.0103;FS=4.928;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.88;ReadPosRankSum=-0.104;SOR=1.051;set=HC	GT:AD:AF:DP	0/1:308,89:0.22:397
chr1	145109456	rs7553975	C	T	2760.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.842;ClippingRankSum=0.000;DB;DP=626;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.44;ReadPosRankSum=-0.497;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:463,159:0.26:622
chr1	145109468	rs2442652	A	G	26434.77	.	AC=2;AF=1.00;AN=2;DB;DP=747;set=Intersection	GT:AD:AF:DP	1/1:2,744:1.00:746
chr1	145109493	rs2442651	C	T	2648.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.187;ClippingRankSum=0.000;DB;DP=1016;ExcessHet=3.0103;FS=0.690;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.61;ReadPosRankSum=0.814;SOR=0.785;set=HC	GT:AD:AF:DP	0/1:807,207:0.20:1014
chr1	145109549	rs2596331	G	T	5466.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.067;ClippingRankSum=0.000;DB;DP=1911;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.90;ReadPosRankSum=-0.579;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:1475,412:0.22:1887
chr1	145109583	rs2794053	C	A	21591.77	.	AC=1;AF=0.500;AN=2;DB;DP=2253;set=Intersection	GT:AD:AF:DP	0/1:1163,1049:0.47:2212
chr1	145109661	rs2655551	G	A	8182.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.976;ClippingRankSum=0.000;DB;DP=2372;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.49;ReadPosRankSum=-0.129;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:1785,558:0.24:2343
chr1	145109763	.	T	G	688.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.051;ClippingRankSum=0.000;DP=634;ExcessHet=3.0103;FS=0.888;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.12;ReadPosRankSum=0.122;SOR=0.523;set=HC	GT:AD:AF:DP	0/1:523,90:0.15:613
chr1	145109809	rs2596327	T	A	866.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.725;ClippingRankSum=0.000;DB;DP=271;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.27;ReadPosRankSum=1.373;SOR=0.374;set=HC	GT:AD:AF:DP	0/1:212,53:0.20:265
chr1	145112284	.	CCG	C	3798.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.625;ClippingRankSum=0.000;DP=390;ExcessHet=3.0103;FS=4.828;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.89;ReadPosRankSum=0.025;SOR=0.450;set=HC	GT:AD:AF:DP	0/1:275,109:0.28:384
chr1	145112287	rs2794042	T	C	1305.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.848;ClippingRankSum=0.000;DB;DP=398;ExcessHet=3.0103;FS=2.708;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.32;ReadPosRankSum=-1.109;SOR=0.921;set=HC	GT:AD:AF:DP	0/1:311,82:0.21:393
chr1	145112288	.	G	GCA	3889.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.160;ClippingRankSum=0.000;DP=405;ExcessHet=3.0103;FS=4.820;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.72;ReadPosRankSum=-0.297;SOR=0.445;set=HC	GT:AD:AF:DP	0/1:287,113:0.28:400
chr1	145112313	rs2596302	T	C	1915.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.784;ClippingRankSum=0.000;DB;DP=633;ExcessHet=3.0103;FS=2.674;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.08;ReadPosRankSum=-0.166;SOR=0.971;set=HC	GT:AD:AF:DP	0/1:494,127:0.20:621
chr1	145112414	rs2590131	T	C	13596.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.395;ClippingRankSum=0.000;DB;DP=2289;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.97;ReadPosRankSum=0.655;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:1821,456:0.20:2277
chr1	145112420	rs2794041	C	T	8705.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.205;ClippingRankSum=0.000;DB;DP=2362;ExcessHet=3.0103;FS=0.606;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.71;ReadPosRankSum=-0.607;SOR=0.623;set=HC	GT:AD:AF:DP	0/1:1751,598:0.25:2349
chr1	145112428	rs2794040	C	T	14226.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.148;ClippingRankSum=0.000;DB;DP=2453;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.84;ReadPosRankSum=-1.780;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:1924,513:0.21:2437
chr1	145112485	rs2794039	C	T	5476.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.576;ClippingRankSum=0.000;DB;DP=2108;ExcessHet=3.0103;FS=0.647;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.61;ReadPosRankSum=1.178;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:1656,439:0.21:2095
chr1	145115658	.	TATTTTTAA	T	3721.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.589;ClippingRankSum=0.000;DP=646;ExcessHet=3.0103;FS=0.796;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=3.462;QD=5.89;ReadPosRankSum=0.885;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:505,127:0.20:632
chr1	145115810	rs2655557	A	G	29865.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.478;ClippingRankSum=0.000;DB;DP=2331;ExcessHet=3.0103;FS=0.521;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=2.184;QD=12.92;ReadPosRankSum=0.132;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:1256,1055:0.46:2311
chr1	145115820	rs2655558	T	C	6516.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.271;ClippingRankSum=0.000;DB;DP=2239;ExcessHet=3.0103;FS=0.624;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.94;ReadPosRankSum=1.096;SOR=0.630;set=HC	GT:AD:AF:DP	0/1:1710,508:0.23:2218
chr1	145139088	rs150935736	C	CG	4773.73	.	AC=2;AF=1.00;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.26;QD=37.29;SOR=9.720;set=HC	GT:AD:AF:DP	1/1:0,128:1.00:128
chr1	145209152	rs144013425	GGGC	G	94.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.786;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=5.690;MLEAC=1;MLEAF=0.500;MQ=51.40;MQRankSum=-3.448;QD=1.25;ReadPosRankSum=1.728;SOR=0.991;set=HC	GT:AD:AF:DP	0/1:68,8:0.11:76
chr1	145209612	.	GCCCCGCCAACCGCCGGGGTT	G	9633.73	.	AC=2;AF=1.00;AN=2;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr1	145209819	rs860659	C	T	149.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.873;ClippingRankSum=0.000;DB;DP=920;ExcessHet=3.0103;FS=18.557;MLEAC=1;MLEAF=0.500;MQ=51.66;MQRankSum=-15.971;QD=0.16;ReadPosRankSum=-4.500;SOR=2.450;set=HC	GT:AD:AF:DP	0/1:825,88:0.10:913
chr1	145209869	rs80228373	AA	CG	3464.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.943;ClippingRankSum=0.000;DB;DP=846;ExcessHet=3.0103;FS=2.527;JOINED;MLEAC=1;MLEAF=0.500;MQ=49.55;MQRankSum=-16.480;QD=4.14;ReadPosRankSum=-2.144;SOR=0.844;set=HC	GT:AD:AF:DP	0/1:704,133:0.16:837
chr1	145248811	rs199902817	A	G	157.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.347;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=39.81;MQRankSum=0.843;QD=4.15;ReadPosRankSum=0.351;SOR=0.209;set=HC	GT:AD:AF:DP	0/1:29,9:0.24:38
chr1	145273431	rs17421312	A	G	2390.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.077;ClippingRankSum=0.000;DB;DP=2436;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.06;MQRankSum=0.056;QD=0.98;ReadPosRankSum=-0.194;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:2079,351:0.14:2430
chr1	145273473	rs202082259	T	C	1013.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.670;ClippingRankSum=0.000;DB;DP=1668;ExcessHet=3.0103;FS=0.808;MLEAC=1;MLEAF=0.500;MQ=54.12;MQRankSum=-1.602;QD=0.61;ReadPosRankSum=0.134;SOR=0.562;set=HC	GT:AD:AF:DP	0/1:1444,224:0.13:1668
chr1	145273520	rs2793994	G	A	3473.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.914;ClippingRankSum=0.000;DB;DP=722;ExcessHet=3.0103;FS=0.656;MLEAC=1;MLEAF=0.500;MQ=47.24;MQRankSum=-9.804;QD=4.82;ReadPosRankSum=0.830;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:521,200:0.28:721
chr1	145281247	rs74721027	T	A	1728.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:126,74:0.37:200
chr1	145281361	rs147539840	TC	T	917.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.244;ClippingRankSum=0.000;DB;DP=1605;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=50.77;MQRankSum=-8.392;QD=0.57;ReadPosRankSum=0.862;SOR=0.838;set=HC	GT:AD:AF:DP	0/1:1443,158:0.10:1601
chr1	145281543	rs8002	C	T	11151.77	.	AC=1;AF=0.500;AN=2;DB;DP=1870;set=Intersection	GT:AD:AF:DP	0/1:1251,600:0.32:1851
chr1	145281613	rs12120756	C	A	1183.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.465;ClippingRankSum=0.000;DB;DP=1277;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.02;MQRankSum=-0.212;QD=0.93;ReadPosRankSum=1.531;SOR=0.630;set=HC	GT:AD:AF:DP	0/1:1160,117:0.09:1277
chr1	145281633	rs28576333	C	A	1307.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.824;ClippingRankSum=0.000;DB;DP=1163;ExcessHet=3.0103;FS=0.957;MLEAC=1;MLEAF=0.500;MQ=56.00;MQRankSum=0.142;QD=1.12;ReadPosRankSum=0.834;SOR=0.529;set=HC	GT:AD:AF:DP	0/1:1057,106:0.09:1163
chr1	145281656	rs4649852	A	T	1447.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.790;ClippingRankSum=0.000;DB;DP=1026;ExcessHet=3.0103;FS=0.883;MLEAC=1;MLEAF=0.500;MQ=55.21;MQRankSum=-1.763;QD=1.41;ReadPosRankSum=-2.411;SOR=0.581;set=HC	GT:AD:AF:DP	0/1:915,111:0.11:1026
chr1	145281780	rs190671398	T	A	233.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.821;ClippingRankSum=0.000;DB;DP=419;ExcessHet=3.0103;FS=10.663;MLEAC=1;MLEAF=0.500;MQ=57.46;MQRankSum=-3.244;QD=0.56;ReadPosRankSum=-0.617;SOR=1.577;set=HC	GT:AD:AF:DP	0/1:364,55:0.13:419
chr1	145281818	rs2691746	T	A	465.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.940;ClippingRankSum=0.000;DB;DP=372;ExcessHet=3.0103;FS=2.753;MLEAC=1;MLEAF=0.500;MQ=53.60;MQRankSum=-0.893;QD=1.26;ReadPosRankSum=-0.032;SOR=0.899;set=HC	GT:AD:AF:DP	0/1:318,53:0.14:371
chr1	145281824	rs4089950	T	G	2901.77	.	AC=1;AF=0.500;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	0/1:251,126:0.33:377
chr1	145282093	rs199946317	G	A	2689.77	.	AC=1;AF=0.500;AN=2;DB;DP=487;set=Intersection	GT:AD:AF:DP	0/1:332,137:0.29:469
chr1	145287052	rs142250323	C	G	38.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=36.12;QD=19.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr1	145415273	rs56025621	C	G	7212.77	.	AC=1;AF=0.500;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	0/1:150,302:0.67:452
chr1	145456732	rs375314716	GA	G	564.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.243;ClippingRankSum=0.000;DB;DP=1035;ExcessHet=3.0103;FS=1.427;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=4.530;QD=0.60;ReadPosRankSum=0.600;SOR=0.587;set=HC	GT:AD:AF:DP	0/1:738,210:0.22:948
chr1	145507826	rs872786	A	T	5322.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr1	145510376	rs147038428	A	G	390.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.24;QD=27.91;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	145515057	rs148070621	CA	C	335.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.713;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=0.876;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=2.187;QD=2.27;ReadPosRankSum=-0.034;SOR=0.863;set=HC	GT:AD:AF:DP	0/1:96,52:0.35:148
chr1	145531980	rs4384171	T	C	3468.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr1	145532010	rs370509438	CTG	C	374.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.295;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=3.835;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.34;ReadPosRankSum=-0.647;SOR=0.522;set=HC	GT:AD:AF:DP	0/1:119,41:0.26:160
chr1	145532052	.	ATG	A	373.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.980;ClippingRankSum=0.000;DP=302;ExcessHet=3.0103;FS=0.926;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.303;QD=1.32;ReadPosRankSum=2.254;SOR=0.882;set=HC	GT:AD:AF:DP	0/1:246,38:0.13:284
chr1	145532549	rs1328584	T	C	13174.77	.	AC=2;AF=1.00;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	1/1:0,475:1.00:475
chr1	145535921	rs2274617	T	C	7503.77	.	AC=1;AF=0.500;AN=2;DB;DP=1122;set=Intersection	GT:AD:AF:DP	0/1:720,391:0.35:1111
chr1	145538664	rs1109216	A	G	1187.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:167,66:0.28:233
chr1	145539659	rs201536468	GTCTC	G	3569.73	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:31,90:0.74:121
chr1	145555901	rs11591182	G	A	2657.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:54,103:0.66:157
chr1	145558565	rs11801520	C	G	5329.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr1	145558824	rs17352281	A	C	14907.77	.	AC=2;AF=1.00;AN=2;DB;DP=546;set=Intersection	GT:AD:AF:DP	1/1:1,533:1.00:534
chr1	145559918	.	C	CA	71.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.917;ClippingRankSum=0.000;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=0.000;QD=1.12;ReadPosRankSum=-0.317;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:50,14:0.22:64
chr1	145561116	rs11578772	G	A	3223.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:68,138:0.67:206
chr1	145562293	rs11579366	G	C	16293.77	.	AC=2;AF=1.00;AN=2;DB;DP=604;set=Intersection	GT:AD:AF:DP	1/1:0,597:1.00:597
chr1	145585317	rs4128488	A	G	8971.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:0,340:1.00:340
chr1	145587858	.	C	CT	166.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.734;ClippingRankSum=0.000;DP=144;ExcessHet=3.0103;FS=2.102;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.49;ReadPosRankSum=2.042;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:83,29:0.26:112
chr1	145597116	rs9728311	C	T	6145.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr1	145597417	rs9728345	C	A	3088.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr1	145598459	rs9729715	T	C	9854.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr1	145601861	rs9286837	G	A	8478.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr1	145696694	rs2231375	G	A	12689.77	.	AC=2;AF=1.00;AN=2;DB;DP=467;set=Intersection	GT:AD:AF:DP	1/1:0,465:1.00:465
chr1	145706564	.	C	CAA	482.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.813;ClippingRankSum=0.000;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=0.861;QD=6.80;ReadPosRankSum=-0.149;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:34,37:0.52:71
chr1	145826770	rs34955113	G	A	2350.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:52,94:0.64:146
chr1	146320949	.	C	T	1218.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.286;ClippingRankSum=0.000;DP=148;ExcessHet=3.0103;FS=2.211;MLEAC=1;MLEAF=0.500;MQ=45.60;MQRankSum=-1.991;QD=8.46;ReadPosRankSum=-1.968;SOR=0.899;set=HC	GT:AD:AF:DP	0/1:83,61:0.42:144
chr1	146321029	rs367739467	C	T	415.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.679;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=2.032;MLEAC=1;MLEAF=0.500;MQ=43.64;MQRankSum=0.125;QD=14.85;ReadPosRankSum=0.413;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:10,18:0.64:28
chr1	146514576	rs34026136	T	C	6155.77	.	AC=1;AF=0.500;AN=2;DB;DP=603;set=Intersection	GT:AD:AF:DP	0/1:298,303:0.50:601
chr1	146656292	rs4950385	A	G	2274.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr1	146672906	rs894469	C	T	13734.77	.	AC=2;AF=1.00;AN=2;DB;DP=508;set=Intersection	GT:AD:AF:DP	1/1:0,503:1.00:503
chr1	146673178	rs6683215	A	G	2112.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr1	146680262	rs2354433	A	G	1935.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr1	146685121	rs1530336	G	A	1672.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr1	146687250	rs1822312	A	T	3315.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr1	146714255	rs1890040	A	G	404.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	146714281	rs1890041	C	G	606.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	146714392	rs1890042	G	C	2722.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr1	146714588	rs1890043	C	T	1266.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	146724093	rs1890037	A	G	3235.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr1	146728149	rs12119390	A	G	1340.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:83,64:0.44:147
chr1	146728162	rs61409326	T	TA	6175.73	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr1	146739068	rs11239963	T	C	4105.77	.	AC=1;AF=0.500;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	0/1:168,190:0.53:358
chr1	146739277	rs4143738	T	C	10116.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:0,354:1.00:354
chr1	146740576	rs11576360	G	A	11044.77	.	AC=2;AF=1.00;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	1/1:0,413:1.00:413
chr1	146747153	rs6680778	T	C	8550.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr1	146747232	rs6672850	C	T	905.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:37,37:0.50:74
chr1	146748008	rs3831929	CAGCCA	C	1779.73	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:38,46:0.55:84
chr1	146748072	rs7534963	A	G	983.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	146751782	rs7547279	A	C	5861.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr1	146756222	rs146052781	AAAAC	A	2593.73	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:75,70:0.48:145
chr1	146759528	rs12755465	A	G	331.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:22,15:0.41:37
chr1	146762984	rs6665723	AG	CA	1202.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;JOINED;set=Intersection	GT:AD:AF:DP	0/1:15,30:0.67:45
chr1	146763089	rs10900333	G	A	6573.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr1	146763415	rs3737854	T	C	1799.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr1	146766069	rs71083827	C	CAT	9624.73	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr1	146767149	rs4950394	G	T	3667.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr1	146767320	rs6537	A	G	1384.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	146767353	rs6538	G	A	185.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:17,10:0.37:27
chr1	147083744	rs677977	C	T	2980.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr1	147092112	rs61754125	G	A	2402.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:104,104:0.50:208
chr1	147096794	rs867270	A	G	4693.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr1	147096828	rs946902	C	G	2958.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr1	147121977	rs6593795	C	T	3250.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr1	147124556	.	G	GA	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.794;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=2.005;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.58;ReadPosRankSum=-0.531;SOR=0.240;set=HC	GT:AD:AF:DP	0/1:15,7:0.32:22
chr1	147230217	rs1692141	T	C	6749.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr1	147380024	rs115981722	G	T	954.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:49,44:0.47:93
chr1	147381397	rs34123490	G	GA	533.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.696;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=2.882;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.68;ReadPosRankSum=1.260;SOR=0.403;set=HC	GT:AD:AF:DP	0/1:94,51:0.35:145
chr1	147381444	rs1532399	A	C	908.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:50,42:0.46:92
chr1	147806559	rs10752439	C	T	7757.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:1,287:1.00:288
chr1	147806874	rs2999607	G	C	5100.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.97;SOR=2.794;set=HC	GT:AD:AF:DP	1/1:0,116:1.00:116
chr1	147806880	rs537191	T	C	4875.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.15;SOR=2.728;set=HC	GT:AD:AF:DP	1/1:0,108:1.00:108
chr1	149290881	rs144019609	C	T	1552.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.387;ClippingRankSum=0.000;DB;DP=420;ExcessHet=3.0103;FS=1.276;MLEAC=1;MLEAF=0.500;MQ=50.39;MQRankSum=1.314;QD=3.71;ReadPosRankSum=-2.384;SOR=0.777;set=HC	GT:AD:AF:DP	0/1:314,105:0.25:419
chr1	149291003	rs201487380	C	T	234.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.156;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=16.791;MLEAC=1;MLEAF=0.500;MQ=40.44;MQRankSum=-1.037;QD=1.89;ReadPosRankSum=0.031;SOR=2.631;set=HC	GT:AD:AF:DP	0/1:105,19:0.15:124
chr1	149376972	rs199868473	C	T	217.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.807;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=43.28;MQRankSum=0.046;QD=12.10;ReadPosRankSum=0.732;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:8,10:0.56:18
chr1	149676264	rs199745503	T	C	842.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.492;ClippingRankSum=0.000;DB;DP=449;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.62;MQRankSum=-13.461;QD=1.93;ReadPosRankSum=-1.432;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:355,81:0.19:436
chr1	149676401	rs146138154	A	G	3722.77	.	AC=1;AF=0.500;AN=2;DB;DP=480;set=Intersection	GT:AD:AF:DP	0/1:284,191:0.40:475
chr1	149676508	rs142083788	A	T	1381.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.702;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=0.898;MLEAC=1;MLEAF=0.500;MQ=44.69;MQRankSum=0.914;QD=10.80;ReadPosRankSum=-1.330;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:76,52:0.41:128
chr1	149676532	rs138339323	A	G	848.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.180;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=7.724;MLEAC=1;MLEAF=0.500;MQ=42.68;MQRankSum=-0.929;QD=10.88;ReadPosRankSum=-0.195;SOR=2.733;set=HC	GT:AD:AF:DP	0/1:53,25:0.32:78
chr1	149676544	rs200589574	C	T	192.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.227;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=7.687;MLEAC=1;MLEAF=0.500;MQ=40.95;MQRankSum=-0.928;QD=3.16;ReadPosRankSum=1.248;SOR=0.051;set=HC	GT:AD:AF:DP	0/1:49,12:0.20:61
chr1	149676574	rs149550720	G	C	167.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.970;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=2.572;MLEAC=1;MLEAF=0.500;MQ=39.95;MQRankSum=-0.782;QD=4.66;ReadPosRankSum=-1.265;SOR=1.675;set=HC	GT:AD:AF:DP	0/1:27,9:0.25:36
chr1	149900985	rs71664710	CA	C	554.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.003;ClippingRankSum=0.000;DB;DP=309;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=2.246;QD=1.93;ReadPosRankSum=1.450;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:190,98:0.34:288
chr1	149906413	rs11205303	T	C	9230.77	.	AC=2;AF=1.00;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	1/1:0,350:1.00:350
chr1	150122493	rs4553237	T	C	2266.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr1	150122573	.	C	G	86.77	.	AC=1;AF=0.500;AN=2;DP=17;set=Intersection	GT:AD:AF:DP	0/1:11,6:0.35:17
chr1	150128425	rs1545762	C	T	1687.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	150129267	rs10749675	G	A	2627.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr1	150199039	rs68136184	CTCCTCT	C	5866.73	.	AC=1;AF=0.500;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	0/1:204,159:0.44:363
chr1	150199123	rs7522034	G	T	2943.77	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:218,149:0.41:367
chr1	150203082	rs201009025	C	CT	409.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.378;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.94;ReadPosRankSum=2.113;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:32,37:0.54:69
chr1	150203984	rs113913866	AT	A	1232.73	.	AC=1;AF=0.500;AN=2;DB;DP=86;MQ=60.13;set=Intersection	GT:AD:AF:DP	0/1:45,41:0.48:86
chr1	150230422	.	GCT	G	211	.	AC=1;AF=0.500;AN=2;BRF=0.34;FR=0.5000;HP=2;HapScore=1;MGOF=12;MMLQ=23;MQ=60.0;NF=4;NR=2;PP=211;QD=36.3333333333;SC=GAGCTCGCTCGCTCTCTCTCT;SbPval=0.4;Source=Platypus;TC=27;TCF=21;TCR=6;TR=6;WE=150230431;WS=150230412;set=Platypus	GT:AD:AF:DP	1/0:21,6:0.22:27
chr1	150234141	rs199767397	G	GT	709.73	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:30,25:0.45:55
chr1	150241230	rs2275780	G	T	3726.77	.	AC=1;AF=0.500;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	0/1:182,185:0.50:367
chr1	150249101	rs11205354	C	A	1812.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:60,76:0.56:136
chr1	150255587	rs2147324	T	C	935.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:28,36:0.56:64
chr1	150256413	.	T	TTTATTA	479.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.621;ClippingRankSum=0.000;DP=95;ExcessHet=3.0103;FS=1.542;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.458;QD=9.99;ReadPosRankSum=0.405;SOR=0.986;set=HC	GT:AD:AF:DP	0/1:32,16:0.33:48
chr1	150258838	rs1122967	C	G	4548.77	.	AC=1;AF=0.500;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	0/1:229,202:0.47:431
chr1	150259400	rs9126	A	C	4653.77	.	AC=1;AF=0.500;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	0/1:146,190:0.57:336
chr1	150276429	rs471738	G	A	905.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:62,46:0.43:108
chr1	150276461	rs471657	G	A	739.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:42,37:0.47:79
chr1	150277387	rs11205359	T	C	213.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:5,10:0.67:15
chr1	150280550	rs4845	G	A	3499.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:158,164:0.51:322
chr1	150280801	rs8006	G	C	284.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:10,11:0.52:21
chr1	150281202	rs580060	A	C	2709.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr1	150281343	rs71622690	C	T	3257.77	.	AC=1;AF=0.500;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	0/1:242,178:0.42:420
chr1	150297334	.	CTT	C	217.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.275;ClippingRankSum=0.000;DP=51;ExcessHet=3.0103;FS=3.485;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=1.583;QD=4.73;ReadPosRankSum=-0.294;SOR=0.877;set=HC	GT:AD:AF:DP	0/1:31,15:0.33:46
chr1	150300727	rs834225	T	C	929.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:46,42:0.48:88
chr1	150307270	rs1260408	T	G	528.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:19,22:0.54:41
chr1	150310827	rs11806171	A	C	1671.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:77,76:0.50:153
chr1	150319081	rs16836143	T	A	329.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:21,16:0.43:37
chr1	150389964	.	GA	G	491.73	.	AC=1;AF=0.500;AN=2;DP=94;set=Intersection	GT:AD:AF:DP	0/1:53,38:0.42:91
chr1	150415631	rs3862206	T	G	641.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:21,31:0.60:52
chr1	150416621	rs74124686	G	C	653.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.775;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=4.770;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.08;ReadPosRankSum=0.736;SOR=1.637;set=HC	GT:AD:AF:DP	0/1:30,29:0.49:59
chr1	150416913	rs16836940	A	G	779.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:41,34:0.45:75
chr1	150437215	rs66513313	A	G	1538.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:115,75:0.39:190
chr1	150459715	rs34001546	T	C	715.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:28,30:0.52:58
chr1	150468842	rs1343965	A	G	743.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:32,32:0.50:64
chr1	150469480	rs12119249	C	T	633.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:41,32:0.44:73
chr1	150470296	rs11588874	G	A	960.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:56,41:0.42:97
chr1	150471156	rs34542152	C	T	4859.77	.	AC=1;AF=0.500;AN=2;DB;DP=594;set=Intersection	GT:AD:AF:DP	0/1:333,255:0.43:588
chr1	150471848	rs34802685	A	AT	60.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.530;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.56;ReadPosRankSum=-1.432;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:29,10:0.26:39
chr1	150477085	rs35866586	A	AC	3010.73	.	AC=1;AF=0.500;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	0/1:247,151:0.38:398
chr1	150480473	rs141248191	G	A	956.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:42,37:0.47:79
chr1	150480571	rs12724450	G	A	3779.77	.	AC=1;AF=0.500;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	0/1:193,177:0.48:370
chr1	150483236	rs9661040	A	C	889.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:33,39:0.54:72
chr1	150483840	rs4970979	C	T	1173.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:57,48:0.46:105
chr1	150484004	rs11801190	G	A	3865.77	.	AC=1;AF=0.500;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	0/1:181,174:0.49:355
chr1	150484395	rs149815479	ACC	A	1140.73	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:21,33:0.61:54
chr1	150485566	rs12031973	T	G	1322.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.822;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.14;ReadPosRankSum=-0.888;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:53,56:0.51:109
chr1	150485571	rs12031974	T	C	4308.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.21;SOR=2.021;set=HC	GT:AD:AF:DP	1/1:0,119:1.00:119
chr1	150522471	rs10668635	C	CTG	3583.73	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:122,92:0.43:214
chr1	150526044	rs41317515	G	C	28069.77	.	AC=2;AF=1.00;AN=2;DB;DP=1050;set=Intersection	GT:AD:AF:DP	1/1:0,1026:1.00:1026
chr1	150528090	rs146160043	G	GACAC	8733.73	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr1	150528118	rs149100901	T	TACAC	5950.73	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr1	150528175	rs35233292	GCA	G	2100.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	150528208	rs9728540	C	T	861.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.80;SOR=2.376;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	150529322	rs34379037	T	TAA	6686.73	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr1	150530265	rs71815576	GGCT	G	2546.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.357;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=3.160;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.75;ReadPosRankSum=-1.237;SOR=1.027;set=HC	GT:AD:AF:DP	0/1:84,68:0.45:152
chr1	150530266	.	GCTGAGC	G	2942	.	AC=1;AF=0.500;AN=2;BRF=0.38;FR=0.5000;HP=1;HapScore=1;MGOF=3;MMLQ=28;MQ=60.0;NF=4;NR=33;PP=2942;QD=20;SC=GCCATGGCAGGCTGAGCCCCC;SbPval=0.59;Source=Platypus;TC=98;TCF=11;TCR=87;TR=37;WE=150530282;WS=150530256;set=Platypus	GT:AD:AF:DP	1/0:61,37:0.38:98
chr1	150530270	rs376060613	AGCC	A	2548.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.231;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=2.311;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.70;ReadPosRankSum=-1.559;SOR=0.910;set=HC	GT:AD:AF:DP	0/1:77,67:0.47:144
chr1	150530273	.	CC	AA	2944	.	AC=1;AF=0.500;AN=2;BRF=0.38;FR=0.5000;HP=5;HapScore=1;MGOF=3;MMLQ=28;MQ=60.0;NF=6;NR=33;PP=2944;QD=20;SC=CAGGCTGAGCCCCCCAGGAAC;SbPval=0.87;Source=Platypus;TC=108;TCF=25;TCR=83;TR=39;WE=150530282;WS=150530256;set=Platypus	GT:AD:AF:DP	1/0:69,39:0.36:108
chr1	150530274	.	C	A	2556.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.825;ClippingRankSum=0.000;DP=139;ExcessHet=3.0103;FS=1.494;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.66;ReadPosRankSum=-1.663;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:70,67:0.49:137
chr1	150531008	rs10888382	T	C	12845.77	.	AC=2;AF=1.00;AN=2;DB;DP=475;set=Intersection	GT:AD:AF:DP	1/1:0,475:1.00:475
chr1	150531050	rs10749657	G	A	15498.77	.	AC=2;AF=1.00;AN=2;DB;DP=598;set=Intersection	GT:AD:AF:DP	1/1:0,590:1.00:590
chr1	150531170	rs10749658	C	T	17811.77	.	AC=2;AF=1.00;AN=2;DB;DP=680;set=Intersection	GT:AD:AF:DP	1/1:0,676:1.00:676
chr1	150531380	rs11204664	T	C	1813.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr1	150550019	rs11428742	T	TA	8761.73	.	AC=2;AF=1.00;AN=2;DB;DP=256;MQ=60.13;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr1	150595354	.	G	GA	49.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.706;ClippingRankSum=0.000;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.92;ReadPosRankSum=-0.132;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:41,13:0.24:54
chr1	150600181	rs2280078	C	T	3450.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr1	150676485	rs12403609	T	C	840.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	150686633	rs34593358	A	T	651.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:55,34:0.38:89
chr1	150687296	rs10888388	C	T	344.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	150730529	.	A	AT	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.224;ClippingRankSum=0.000;DP=59;ExcessHet=3.0103;FS=1.869;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.82;ReadPosRankSum=-0.241;SOR=1.238;set=HC	GT:AD:AF:DP	0/1:32,9:0.22:41
chr1	150771703	rs10788796	T	C	16384.77	.	AC=2;AF=1.00;AN=2;DB;DP=627;set=Intersection	GT:AD:AF:DP	1/1:0,625:1.00:625
chr1	150779401	rs12746973	G	A	1060.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:26,43:0.62:69
chr1	150779755	rs6587522	C	T	9617.77	.	AC=2;AF=1.00;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	1/1:0,362:1.00:362
chr1	150789884	rs1805133	C	T	1327.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.127;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.20;ReadPosRankSum=0.331;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:93,69:0.43:162
chr1	150790289	rs35672926	C	CA	687.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.496;ClippingRankSum=0.000;DB;DP=232;ExcessHet=3.0103;FS=7.002;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.733;QD=3.62;ReadPosRankSum=0.472;SOR=1.288;set=HC	GT:AD:AF:DP	0/1:115,75:0.39:190
chr1	150801466	rs3738483	T	C	3713.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr1	150804401	rs34083816	GA	G	1038.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.650;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=3.485;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.619;QD=5.22;ReadPosRankSum=-1.352;SOR=0.950;set=HC	GT:AD:AF:DP	0/1:98,101:0.51:199
chr1	150804484	rs9325978	G	C	897.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:24,39:0.62:63
chr1	150849071	rs66776757	ACC	A,AC	1283.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.367;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=3.522;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=27.31;ReadPosRankSum=-1.425;SOR=0.663;set=HC	GT:AD:AF:DP	1/2:1,24,22:0.51,0.47:47
chr1	150914922	rs11430191	C	CA	178.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.086;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=4.804;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.69;ReadPosRankSum=-2.718;SOR=0.213;set=HC	GT:AD:AF:DP	0/1:78,28:0.26:106
chr1	150932953	rs374284707	GA	G	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.631;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=3.039;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.99;ReadPosRankSum=0.977;SOR=1.911;set=HC	GT:AD:AF:DP	0/1:11,7:0.39:18
chr1	150936903	rs1045628	T	C	2203.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:80,98:0.55:178
chr1	150938616	rs267739	G	A	4420.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr1	150944541	rs267737	A	G	614.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	150956623	rs41310861	G	A	7318.77	.	AC=1;AF=0.500;AN=2;DB;DP=699;set=Intersection	GT:AD:AF:DP	0/1:342,347:0.50:689
chr1	150960593	rs149528939	G	A	5525.77	.	AC=1;AF=0.500;AN=2;DB;DP=470;set=Intersection	GT:AD:AF:DP	0/1:215,249:0.54:464
chr1	150969992	rs2925740	T	C	12750.77	.	AC=2;AF=1.00;AN=2;DB;DP=465;set=Intersection	GT:AD:AF:DP	1/1:0,460:1.00:460
chr1	150970577	rs2925741	G	T	6138.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:1,219:1.00:220
chr1	150970836	rs1673160	T	A	3013.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr1	150972538	rs708909	G	A	1673.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	150974162	rs771204	G	A	5941.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr1	150975108	rs771205	T	C	6244.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr1	150990466	rs71090118	C	CAT	2698.73	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:53,69:0.57:122
chr1	150990825	rs3738480	A	G	1103.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:1,36:0.97:37
chr1	150991221	rs11204758	A	G	2666.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:109,123:0.53:232
chr1	150991285	rs6664220	A	G	2221.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr1	150997940	rs3738478	T	C	2197.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:78,86:0.52:164
chr1	150998221	rs55774303	AT	A	640.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.202;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=2.849;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.061;QD=5.72;ReadPosRankSum=0.086;SOR=0.443;set=HC	GT:AD:AF:DP	0/1:57,55:0.49:112
chr1	150999737	rs11204762	A	G	1194.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:92,63:0.41:155
chr1	150999863	rs55717234	A	G	751.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:63,39:0.38:102
chr1	151001583	rs6691701	G	A	920.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:19,38:0.67:57
chr1	151006539	rs3738476	C	A	4457.77	.	AC=1;AF=0.500;AN=2;DB;DP=518;set=Intersection	GT:AD:AF:DP	0/1:291,221:0.43:512
chr1	151019180	rs6587553	A	G	3348.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:141,154:0.52:295
chr1	151026815	rs2902810	C	T	4195.77	.	AC=1;AF=0.500;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	0/1:199,205:0.51:404
chr1	151028234	rs11204767	G	T	7608.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr1	151039609	rs3738481	A	G	962.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.169;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.945;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.19;ReadPosRankSum=-1.684;SOR=0.501;set=HC	GT:AD:AF:DP	0/1:39,47:0.55:86
chr1	151063008	.	G	A	5569.77	.	AC=1;AF=0.500;AN=2;DP=518;set=Intersection	GT:AD:AF:DP	0/1:252,259:0.51:511
chr1	151070252	rs35034487	CA	C	987.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.932;ClippingRankSum=0.000;DB;DP=212;ExcessHet=3.0103;FS=7.945;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.027;QD=5.28;ReadPosRankSum=-0.460;SOR=0.303;set=HC	GT:AD:AF:DP	0/1:96,91:0.49:187
chr1	151104598	rs4971005	A	G	262.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:6,11:0.65:17
chr1	151104950	rs10788800	G	A	1932.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:99,89:0.47:188
chr1	151105824	rs4971006	C	G	637.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:24,31:0.56:55
chr1	151108137	rs4971007	T	G	8395.77	.	AC=1;AF=0.500;AN=2;DB;DP=734;set=Intersection	GT:AD:AF:DP	0/1:334,395:0.54:729
chr1	151110832	rs72708441	G	A	6483.77	.	AC=1;AF=0.500;AN=2;DB;DP=582;set=Intersection	GT:AD:AF:DP	0/1:272,306:0.53:578
chr1	151114882	rs11464219	C	CT	1651.73	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:81,57:0.41:138
chr1	151134579	rs11459817	T	TA	203.73	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:25,17:0.40:42
chr1	151140888	rs373666513	CT	C	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.314;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=2.584;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=2.675;QD=0.36;ReadPosRankSum=1.609;SOR=0.364;set=HC	GT:AD:AF:DP	0/1:70,17:0.20:87
chr1	151144314	rs200165349	C	CT	145.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.352;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=10.299;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.00;ReadPosRankSum=-0.162;SOR=2.893;set=HC	GT:AD:AF:DP	0/1:53,20:0.27:73
chr1	151146186	rs7552226	C	G	3482.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr1	151146276	rs7521416	T	C	1283.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	151149601	rs6656261	A	G	1379.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	151205303	rs7544947	A	G	2951.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:1,97:0.99:98
chr1	151209063	rs12407426	C	T	17833.77	.	AC=2;AF=1.00;AN=2;DB;DP=687;set=Intersection	GT:AD:AF:DP	1/1:0,679:1.00:679
chr1	151209297	.	C	CT	489.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.491;ClippingRankSum=0.000;DP=88;ExcessHet=3.0103;FS=1.885;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=-0.918;QD=12.24;ReadPosRankSum=0.778;SOR=0.275;set=HC	GT:AD:AF:DP	1/1:7,33:0.82:40
chr1	151210789	rs7532935	C	T	14141.77	.	AC=2;AF=1.00;AN=2;DB;DP=541;set=Intersection	GT:AD:AF:DP	1/1:0,534:1.00:534
chr1	151212399	rs141190258	C	CCTT	7713.73	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr1	151227371	rs3811405	A	G	1112.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	151237589	rs3216063	TC	T	3358.73	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr1	151238222	rs2275900	G	A	3402.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr1	151239051	rs7489	T	C	11103.77	.	AC=2;AF=1.00;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	1/1:0,429:1.00:429
chr1	151239570	rs10888408	C	T	5041.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr1	151254041	rs3811406	T	C	8705.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,323:1.00:323
chr1	151263677	rs145032688	G	GACA	3932.73	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:102,103:0.50:205
chr1	151263782	rs10788803	A	G	1157.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:1,38:0.97:39
chr1	151266354	rs77416301	C	T	4298.77	.	AC=1;AF=0.500;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	0/1:150,194:0.56:344
chr1	151280400	rs1536617	C	G	2095.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr1	151288172	rs1056847	G	A	4020.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr1	151288391	rs1752379	A	G	7860.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr1	151314379	rs1752387	T	C	624.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	151314418	rs2233857	T	C	539.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:28,24:0.46:52
chr1	151316161	rs1752386	G	A	4241.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr1	151337788	rs10788804	A	G	3422.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:1,113:0.99:114
chr1	151340830	rs72710113	A	G	3517.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:168,165:0.50:333
chr1	151341728	rs35093538	G	GC	443.73	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:32,19:0.37:51
chr1	151372138	rs7172	G	A	7612.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr1	151372770	rs2495390	A	G	2604.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr1	151373200	rs2495391	T	C	6132.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr1	151377248	rs6667714	T	C	2845.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr1	151379250	rs2274535	G	A	1758.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr1	151380504	rs200057999	AAAAG	A	228.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.020;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=5.444;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.17;ReadPosRankSum=-0.391;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:5,23:0.82:28
chr1	151381320	rs3831142	GA	G	4782.73	.	AC=2;AF=1.00;AN=2;DB;DP=239;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.14;QD=23.44;SOR=1.633;set=HC	GT:AD:AF:DP	1/1:0,204:1.00:204
chr1	151384052	.	T	TA	295.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.667;ClippingRankSum=0.000;DP=190;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=2.572;QD=1.65;ReadPosRankSum=-0.049;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:133,46:0.26:179
chr1	151384711	rs1887545	A	G	5525.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr1	151384733	rs3748550	G	A	7152.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr1	151395782	rs2274533	T	C	2304.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr1	151396037	rs2274534	A	C	7897.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr1	151400942	rs11204811	A	C	3043.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.45;SOR=1.566;set=HC	GT:AD:AF:DP	1/1:0,107:1.00:107
chr1	151402045	rs6587577	A	G	6561.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:2,254:0.99:256
chr1	151495796	rs2337359	T	C	1781.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:59,78:0.57:137
chr1	151497140	rs1573130	T	C	949.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:41,46:0.53:87
chr1	151497376	rs1573129	G	A	180.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:9,9:0.50:18
chr1	151499635	rs2298168	C	T	440.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:18,20:0.53:38
chr1	151501698	rs2096232	A	G	1279.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	151501737	rs6678068	T	C	2214.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr1	151508061	rs11204842	A	C	1004.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	151518484	rs71580387	T	TTC	2817.73	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.51;QD=39.69;SOR=2.206;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr1	151535020	rs143684177	A	ATC	991.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.717;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.54;ReadPosRankSum=-0.437;SOR=0.532;set=HC	GT:AD:AF:DP	0/1:9,35:0.80:44
chr1	151538507	rs11405272	T	TC	186.75	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.12;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	151538784	rs201554325	TTC	T	1955.73	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:35,70:0.67:105
chr1	151542099	rs3748610	G	T	2564.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:125,121:0.49:246
chr1	151546931	rs6660238	A	G	3560.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:1,114:0.99:115
chr1	151551320	rs3748608	G	A	803.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:53,43:0.45:96
chr1	151552301	rs3833527	TG	T	560.73	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:13,17:0.57:30
chr1	151553918	rs10494267	C	T	90.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:10,5:0.33:15
chr1	151554503	rs1891592	T	C	1761.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:127,81:0.39:208
chr1	151634512	rs3831367	A	AT	879.73	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:50,49:0.49:99
chr1	151634803	rs11808761	G	A	1668.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:90,67:0.43:157
chr1	151655751	rs73000088	C	T	860.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:34,41:0.55:75
chr1	151675618	rs1308150	T	C	6462.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr1	151679441	rs1308152	T	C	179.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:9,8:0.47:17
chr1	151679900	rs10888428	C	T	3887.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:132,175:0.57:307
chr1	151686983	rs939592	T	A	2558.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:87,120:0.58:207
chr1	151700189	rs72506285	C	CCTG	5639.73	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr1	151700214	rs2275920	T	C	868.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:41,40:0.49:81
chr1	151700227	rs2275921	G	A	818.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:37,31:0.46:68
chr1	151701345	rs2298294	A	G	2616.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:120,122:0.50:242
chr1	151732700	rs10888433	A	G	4087.77	.	AC=1;AF=0.500;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	0/1:227,200:0.47:427
chr1	151733335	rs8480	T	G	5371.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.664;ClippingRankSum=0.000;DB;DP=541;ExcessHet=3.0103;FS=2.486;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=0.013;QD=10.21;ReadPosRankSum=-1.510;SOR=0.503;set=HC	GT:AD:AF:DP	0/1:265,261:0.50:526
chr1	151733379	.	C	CAAA	504.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.468;ClippingRankSum=0.000;DP=240;ExcessHet=3.0103;FS=5.188;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=1.156;QD=5.26;ReadPosRankSum=-0.836;SOR=0.910;set=HC	GT:AD:AF:DP	0/1:65,31:0.32:96
chr1	151740479	rs1196457	C	A	1873.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	151740666	rs2495397	T	C	10484.77	.	AC=2;AF=1.00;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	1/1:0,387:1.00:387
chr1	151742550	.	GGAGAGA	G	2710.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.609;ClippingRankSum=0.000;DP=155;ExcessHet=3.0103;FS=2.340;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=-1.855;QD=17.83;ReadPosRankSum=1.981;SOR=0.480;set=HC	GT:AD:AF:DP	0/1:81,71:0.47:152
chr1	151742553	.	GAGAGAGGGAGAGGGAGACCATGGGGAGAC	G	2972	.	AC=1;AF=0.500;AN=2;BRF=0.47;FR=0.5000;HP=2;HapScore=2;MGOF=8;MMLQ=24;MQ=59.84;NF=10;NR=17;PP=2972;QD=20;SC=AGACCGTGGAGAGAGAGGGAG;SbPval=0.14;Source=Platypus;TC=97;TCF=51;TCR=46;TR=27;WE=151742596;WS=151742543;set=Platypus	GT:AD:AF:DP	0/1:70,27:0.28:97
chr1	151742565	rs140076465	GGGAGACCATGGGGAGACGGAGAC	G	3108.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.836;ClippingRankSum=0.000;DB;DP=238;ExcessHet=3.0103;FS=1.044;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=-2.099;QD=13.29;ReadPosRankSum=1.793;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:139,95:0.41:234
chr1	151742588	.	C	G	2962	.	AC=1;AF=0.500;AN=2;BRF=0.47;FR=0.5000;HP=2;HapScore=2;MGOF=8;MMLQ=24;MQ=59.94;NF=44;NR=31;PP=2962;QD=20;SC=GAGACGGAGACGGAGAGGGAG;SbPval=0.46;Source=Platypus;TC=170;TCF=103;TCR=67;TR=75;WE=151742596;WS=151742543;set=Platypus	GT:AD:AF:DP	0/1:95,75:0.44:170
chr1	151742798	rs3748612	T	C	1277.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:51,49:0.49:100
chr1	151747043	rs1123855	C	T	3205.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:170,156:0.48:326
chr1	151747733	rs1781421	C	T	1278.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:33,51:0.61:84
chr1	151747799	rs1781419	G	A	1059.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:51,44:0.46:95
chr1	151747970	rs11204885	A	G	1699.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:103,84:0.45:187
chr1	151748425	rs3923394	C	A	1595.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:64,69:0.52:133
chr1	151751081	rs1996729	G	A	1314.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:62,61:0.50:123
chr1	151753805	rs11355113	AT	A	955.77	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=-0.795;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=7.782;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=39.82;ReadPosRankSum=1.737;SOR=3.325;set=HC	GT:AD:AF:DP	1/1:1,23:0.96:24
chr1	151753807	rs36118417	AT	A	57.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.938;ClippingRankSum=-0.000;DB;DP=28;ExcessHet=3.0103;FS=6.990;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.61;ReadPosRankSum=1.853;SOR=3.611;set=HC	GT:AD:AF:DP	0/1:8,8:0.50:16
chr1	151753808	rs200906345	T	A	65.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.478;ClippingRankSum=-0.000;DB;DP=28;ExcessHet=3.0103;FS=2.596;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.11;ReadPosRankSum=-0.987;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:9,7:0.44:16
chr1	151754112	rs35077383	T	C	2684.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:117,119:0.50:236
chr1	151780177	rs3828057	C	T	1461.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:82,70:0.46:152
chr1	151783688	rs939595	A	C	457.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:21,20:0.49:41
chr1	151789588	rs151171878	C	CTGTGTGTG	2108.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	151789609	rs56273334	C	T	2166.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.88;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr1	151789609	.	CGC	TGT	1169	.	AC=2;AF=1.00;AN=2;BRF=0.37;FR=1.0000;HP=2;HapScore=1;MGOF=32;MMLQ=24;MQ=60.0;NF=50;NR=12;PP=1169;QD=19.7172237881;SC=TGTGTGTGTGCGCGCGCGCGC;SbPval=0.83;Source=Platypus;TC=71;TCF=53;TCR=18;TR=62;WE=151789619;WS=151789597;set=Platypus	GT:AD:AF:DP	1/1:9,62:0.87:71
chr1	151789611	rs55841824	C	T	2165.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.86;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr1	151789647	rs12144914	T	G	1824.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:60,80:0.57:140
chr1	151798295	rs12030974	G	A	7636.77	.	AC=1;AF=0.500;AN=2;DB;DP=786;set=Intersection	GT:AD:AF:DP	0/1:399,379:0.49:778
chr1	151803449	rs80223568	G	T	2400.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:116,112:0.49:228
chr1	151811226	rs6673556	G	A	1520.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr1	151819691	.	AGGAGGCAGGAGGCAGGCAGGGGAGGCAGGAGGCAGGAGGCAGGCAGG	A	1875.73	.	AC=2;AF=1.00;AN=2;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.97;QD=45.75;SOR=1.501;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	151820298	rs6587624	G	C	8611.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;MQ=60.03;set=Intersection	GT:AD:AF:DP	1/1:0,318:1.00:318
chr1	151820324	rs6587625	T	C	2994.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:141,139:0.50:280
chr1	151820845	rs60166269	C	T	899.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:32,37:0.54:69
chr1	151825991	rs7556386	G	T	1648.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:81,83:0.51:164
chr1	151862661	rs1060870	G	A	2538.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:170,128:0.43:298
chr1	151867560	rs3762427	G	A	5179.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr1	151881885	rs3748805	A	C	2660.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr1	152009530	rs3811422	T	C	599.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	152079823	rs1131473	C	G	3529.77	.	AC=1;AF=0.500;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	0/1:182,168:0.48:350
chr1	152079989	rs1131471	T	G	6941.77	.	AC=1;AF=0.500;AN=2;DB;DP=654;set=Intersection	GT:AD:AF:DP	0/1:325,317:0.49:642
chr1	152081921	rs2496253	G	C	8485.77	.	AC=1;AF=0.500;AN=2;DB;DP=660;set=Intersection	GT:AD:AF:DP	0/1:275,372:0.57:647
chr1	152084175	.	T	TTGCTGCTCGCGCCTCTCC	1362.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.478;ClippingRankSum=0.000;DP=1044;ExcessHet=3.0103;FS=2.026;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=-1.673;QD=2.42;ReadPosRankSum=6.845;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:416,148:0.26:564
chr1	152085505	rs2515663	A	C	8294.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,318:1.00:318
chr1	152127455	rs75957773	T	C	10054.77	.	AC=1;AF=0.500;AN=2;DB;DP=841;set=Intersection	GT:AD:AF:DP	0/1:384,449:0.54:833
chr1	152127530	.	C	CA	9134.73	.	AC=1;AF=0.500;AN=2;DP=667;set=Intersection	GT:AD:AF:DP	0/1:352,297:0.46:649
chr1	152129065	.	GTGGTGGGAATCTCTGTCTTGTTTCTCAGACTGACCA	G	13235.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.514;ClippingRankSum=0.000;DP=1065;ExcessHet=3.0103;FS=0.533;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=-3.731;QD=14.16;ReadPosRankSum=0.254;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:566,369:0.39:935
chr1	152130178	.	CAG	C	2708.73	.	AC=1;AF=0.500;AN=2;DP=146;set=Intersection	GT:AD:AF:DP	0/1:69,71:0.51:140
chr1	152185762	rs41266112	C	G	18251.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.954;ClippingRankSum=0.000;DB;DP=437;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.28;MQRankSum=-0.521;QD=41.96;ReadPosRankSum=-0.256;SOR=0.969;set=HC	GT:AD:AF:DP	1/1:4,431:0.99:435
chr1	152185768	rs41266114	T	G	17265.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.958;ClippingRankSum=0.000;DB;DP=378;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.17;MQRankSum=-0.564;QD=45.92;ReadPosRankSum=-0.254;SOR=0.931;set=HC	GT:AD:AF:DP	1/1:4,372:0.99:376
chr1	152185774	rs61814932	A	G	14956.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.152;ClippingRankSum=0.000;DB;DP=317;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.01;MQRankSum=-0.536;QD=47.48;ReadPosRankSum=-1.310;SOR=0.577;set=HC	GT:AD:AF:DP	1/1:3,312:0.99:315
chr1	152185780	rs41266116	G	A	12526.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.804;ClippingRankSum=0.000;DB;DP=265;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.90;MQRankSum=-0.568;QD=47.63;ReadPosRankSum=-1.463;SOR=0.739;set=HC	GT:AD:AF:DP	1/1:3,260:0.99:263
chr1	152185790	rs76102381	T	C	8521.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.391;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=2.761;MLEAC=2;MLEAF=1.000;MQ=58.26;MQRankSum=-0.591;QD=50.42;ReadPosRankSum=-2.423;SOR=0.262;set=HC	GT:AD:AF:DP	1/1:2,167:0.99:169
chr1	152185792	rs74493243	G	A	7396.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.769;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=2.745;MLEAC=2;MLEAF=1.000;MQ=58.07;MQRankSum=-0.614;QD=48.66;ReadPosRankSum=-2.421;SOR=0.269;set=HC	GT:AD:AF:DP	1/1:2,150:0.99:152
chr1	152185796	rs41266118	A	G	6451.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.678;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=2.643;MLEAC=2;MLEAF=1.000;MQ=57.79;MQRankSum=-0.665;QD=48.51;ReadPosRankSum=-2.417;SOR=0.316;set=HC	GT:AD:AF:DP	1/1:2,131:0.98:133
chr1	152185812	.	C	CAG	3247.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.404;ClippingRankSum=0.000;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.25;MQRankSum=-0.880;QD=47.76;ReadPosRankSum=-2.394;SOR=0.553;set=HC	GT:AD:AF:DP	1/1:2,66:0.97:68
chr1	152185817	.	CCA	C	1582.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.042;ClippingRankSum=0.000;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.18;MQRankSum=-0.923;QD=51.06;ReadPosRankSum=-2.310;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:2,29:0.94:31
chr1	152185823	rs41266120	C	T	931.90	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.504;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.88;MQRankSum=-1.013;QD=58.24;ReadPosRankSum=-2.189;SOR=3.258;set=HC	GT:AD:AF:DP	0/1:2,14:0.88:16
chr1	152191709	rs6662450	C	G	18814.77	.	AC=2;AF=1.00;AN=2;DB;DP=682;set=Intersection	GT:AD:AF:DP	1/1:0,675:1.00:675
chr1	152191879	rs10788828	G	A	17421.77	.	AC=2;AF=1.00;AN=2;DB;DP=641;set=Intersection	GT:AD:AF:DP	1/1:2,628:1.00:630
chr1	152192114	rs7520249	C	T	13084.77	.	AC=1;AF=0.500;AN=2;DB;DP=592;set=Intersection	GT:AD:AF:DP	0/1:64,523:0.89:587
chr1	152192163	rs61814943	G	T	962.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.429;ClippingRankSum=0.000;DB;DP=505;ExcessHet=3.0103;FS=2.447;MLEAC=1;MLEAF=0.500;MQ=57.56;MQRankSum=-14.929;QD=1.91;ReadPosRankSum=7.206;SOR=0.949;set=HC	GT:AD:AF:DP	0/1:416,87:0.17:503
chr1	152192293	rs7520375	C	T	9250.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr1	152192549	rs12145941	T	G	7551.77	.	AC=1;AF=0.500;AN=2;DB;DP=802;set=Intersection	GT:AD:AF:DP	0/1:430,371:0.46:801
chr1	152192631	rs6587647	C	T	25399.77	.	AC=2;AF=1.00;AN=2;DB;DP=929;set=Intersection	GT:AD:AF:DP	1/1:2,923:1.00:925
chr1	152192687	rs6587648	T	C	24794.77	.	AC=2;AF=1.00;AN=2;DB;DP=914;set=Intersection	GT:AD:AF:DP	1/1:0,909:1.00:909
chr1	152192825	rs6666097	C	T	5896.77	.	AC=1;AF=0.500;AN=2;DB;DP=560;set=Intersection	GT:AD:AF:DP	0/1:289,261:0.47:550
chr1	152192978	rs6587649	T	C	24956.77	.	AC=2;AF=1.00;AN=2;DB;DP=923;MQ=59.93;set=Intersection	GT:AD:AF:DP	1/1:0,916:1.00:916
chr1	152193052	rs6587650	A	G	24147.77	.	AC=2;AF=1.00;AN=2;DB;DP=899;set=Intersection	GT:AD:AF:DP	1/1:0,897:1.00:897
chr1	152193121	rs6587651	G	T	17613.77	.	AC=2;AF=1.00;AN=2;DB;DP=623;set=Intersection	GT:AD:AF:DP	1/1:2,620:1.00:622
chr1	152193286	rs7545406	G	T	9851.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.231;ClippingRankSum=0.000;DB;DP=872;ExcessHet=3.0103;FS=1.099;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-2.324;QD=11.47;ReadPosRankSum=-0.357;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:426,433:0.50:859
chr1	152193291	rs6587652	G	T	31806.77	.	AC=2;AF=1.00;AN=2;DB;DP=889;set=Intersection	GT:AD:AF:DP	1/1:0,876:1.00:876
chr1	152193544	rs7535536	A	G	31116.77	.	AC=2;AF=1.00;AN=2;DB;DP=708;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.39;SOR=0.951;set=HC	GT:AD:AF:DP	1/1:0,701:1.00:701
chr1	152193547	rs6587653	G	A	30955.77	.	AC=2;AF=1.00;AN=2;DB;DP=690;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.46;SOR=0.997;set=HC	GT:AD:AF:DP	1/1:0,681:1.00:681
chr1	152193851	rs11204937	C	T	14514.77	.	AC=2;AF=1.00;AN=2;DB;DP=541;set=Intersection	GT:AD:AF:DP	1/1:0,536:1.00:536
chr1	152193990	rs11204938	A	G	3890.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr1	152195728	rs34061715	AT	A	5154.73	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:13,270:0.95:283
chr1	152323132	rs12568784	G	T	3943.77	.	AC=1;AF=0.500;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	0/1:203,187:0.48:390
chr1	152325732	rs12022217	G	A	13286.77	.	AC=1;AF=0.500;AN=2;DB;DP=1388;set=Intersection	GT:AD:AF:DP	0/1:720,643:0.47:1363
chr1	152327469	rs76514540	C	T	13470.77	.	AC=1;AF=0.500;AN=2;DB;DP=1472;set=Intersection	GT:AD:AF:DP	0/1:965,482:0.33:1447
chr1	152327502	rs138997916	A	G	7808.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.653;ClippingRankSum=0.000;DB;DP=1218;ExcessHet=3.0103;FS=3.117;MLEAC=1;MLEAF=0.500;MQ=59.36;MQRankSum=-16.066;QD=6.48;ReadPosRankSum=-10.439;SOR=0.991;set=HC	GT:AD:AF:DP	0/1:953,252:0.21:1205
chr1	152327526	rs12758283	T	C	1018.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=11.337;ClippingRankSum=0.000;DB;DP=1103;ExcessHet=3.0103;FS=9.799;MLEAC=1;MLEAF=0.500;MQ=59.46;MQRankSum=-21.184;QD=0.94;ReadPosRankSum=-12.601;SOR=1.847;set=HC	GT:AD:AF:DP	0/1:996,88:0.08:1084
chr1	152328411	rs6679449	A	G	11389.77	.	AC=1;AF=0.500;AN=2;DB;DP=1537;set=Intersection	GT:AD:AF:DP	0/1:1000,511:0.34:1511
chr1	152329369	rs2282302	C	G	10179.77	.	AC=1;AF=0.500;AN=2;DB;DP=989;set=Intersection	GT:AD:AF:DP	0/1:520,461:0.47:981
chr1	152329435	rs2282303	C	T	11397.77	.	AC=1;AF=0.500;AN=2;DB;DP=1089;set=Intersection	GT:AD:AF:DP	0/1:535,535:0.50:1070
chr1	152331240	rs3818831	G	A	3780.77	.	AC=1;AF=0.500;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	0/1:219,185:0.46:404
chr1	152382062	rs10888486	C	T	2065.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:97,83:0.46:180
chr1	152382120	rs3829868	C	T	4534.77	.	AC=1;AF=0.500;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	0/1:210,200:0.49:410
chr1	152384498	rs3215709	G	GT	1133.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	152384759	rs7521839	A	G	3584.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:131,167:0.56:298
chr1	152384833	rs1923492	T	C	3133.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr1	152484129	rs2105117	G	A	14659.77	.	AC=1;AF=0.500;AN=2;DB;DP=1534;MQ=59.98;set=Intersection	GT:AD:AF:DP	0/1:796,729:0.48:1525
chr1	152487979	rs2282296	C	T	1921.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:92,92:0.50:184
chr1	152488063	rs1053588	C	T	2079.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:71,93:0.57:164
chr1	152538358	rs17659359	G	C	1740.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:82,82:0.50:164
chr1	152552285	rs512208	C	A	4786.77	.	AC=1;AF=0.500;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	0/1:204,221:0.52:425
chr1	152552461	rs4845313	C	A	2276.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:107,105:0.50:212
chr1	152636843	rs9793541	A	T	3378.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:161,158:0.50:319
chr1	152681543	rs1332496	T	C	26824.77	.	AC=2;AF=1.00;AN=2;DB;DP=1007;set=Intersection	GT:AD:AF:DP	1/1:0,995:1.00:995
chr1	152681680	rs6143428	C	CAGCTCTGGGGGCTGCTGT	12322.73	.	AC=2;AF=1.00;AN=2;DB;DP=776;set=Intersection	GT:AD:AF:DP	1/1:4,430:0.99:434
chr1	152691943	rs1332499	G	A	2218.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:91,104:0.53:195
chr1	152692074	rs1332500	G	C	6707.77	.	AC=1;AF=0.500;AN=2;DB;DP=646;set=Intersection	GT:AD:AF:DP	0/1:320,312:0.49:632
chr1	152692472	rs873775	A	C	9949.77	.	AC=1;AF=0.500;AN=2;DB;DP=946;set=Intersection	GT:AD:AF:DP	0/1:466,460:0.50:926
chr1	152692588	rs944682	A	G	7269.77	.	AC=1;AF=0.500;AN=2;DB;DP=719;set=Intersection	GT:AD:AF:DP	0/1:361,350:0.49:711
chr1	152692781	rs3814350	G	T	2424.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:71,106:0.60:177
chr1	152692862	rs3814351	G	C	743.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:17,30:0.64:47
chr1	152732106	rs17612167	A	T	6346.77	.	AC=1;AF=0.500;AN=2;DB;DP=535;set=Intersection	GT:AD:AF:DP	0/1:232,295:0.56:527
chr1	152732436	rs4845480	G	C	4802.77	.	AC=1;AF=0.500;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	0/1:193,194:0.50:387
chr1	152733301	rs4329520	T	A	15759.77	.	AC=1;AF=0.500;AN=2;DB;DP=1494;set=Intersection	GT:AD:AF:DP	0/1:735,740:0.50:1475
chr1	152749091	rs41268480	C	T	2348.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:109,99:0.48:208
chr1	152759950	rs11205106	A	G	4980.77	.	AC=1;AF=0.500;AN=2;DB;DP=605;set=Intersection	GT:AD:AF:DP	0/1:322,258:0.44:580
chr1	152777868	rs36107483	A	G	5154.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.806;ClippingRankSum=0.000;DB;DP=544;ExcessHet=3.0103;FS=0.529;MLEAC=1;MLEAF=0.500;MQ=59.40;MQRankSum=-5.908;QD=9.71;ReadPosRankSum=0.216;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:287,244:0.46:531
chr1	152777964	rs17624493	G	A	2987.77	.	AC=1;AF=0.500;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	0/1:221,156:0.41:377
chr1	152882610	rs2229496	A	G	4802.77	.	AC=1;AF=0.500;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	0/1:239,213:0.47:452
chr1	152882982	rs7520711	C	G,CAGCAGCAGGAGGGGCAGCTGGAGCTCTCTG	3772.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=188;set=Intersection	GT:AF:DP	1/2:0.70,0.30:106
chr1	152883608	rs7545413	G	A	3748.77	.	AC=1;AF=0.500;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	0/1:202,175:0.46:377
chr1	152883680	rs7535306	A	G	5185.77	.	AC=1;AF=0.500;AN=2;DB;DP=507;set=Intersection	GT:AD:AF:DP	0/1:269,229:0.46:498
chr1	152883711	rs7545520	G	C	5947.77	.	AC=1;AF=0.500;AN=2;DB;DP=595;set=Intersection	GT:AD:AF:DP	0/1:308,277:0.47:585
chr1	152884111	rs913996	G	A	917.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:31,41:0.57:72
chr1	152944594	rs3170863	C	T	6811.77	.	AC=1;AF=0.500;AN=2;DB;DP=689;set=Intersection	GT:AD:AF:DP	0/1:354,328:0.48:682
chr1	152957573	rs1611760	T	C	941.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:29,34:0.54:63
chr1	152957832	rs1611762	C	A	6517.77	.	AC=1;AF=0.500;AN=2;DB;DP=593;set=Intersection	GT:AD:AF:DP	0/1:293,291:0.50:584
chr1	152957887	rs1611764	G	A	6663.77	.	AC=1;AF=0.500;AN=2;DB;DP=616;set=Intersection	GT:AD:AF:DP	0/1:303,299:0.50:602
chr1	152975495	rs2075739	G	A	4448.77	.	AC=1;AF=0.500;AN=2;DB;DP=508;set=Intersection	GT:AD:AF:DP	0/1:286,218:0.43:504
chr1	152975658	rs67156933	AGAGCCAGGCTGTACCAAGGTCCCT	A	1843.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.952;ClippingRankSum=0.000;DB;DP=355;ExcessHet=3.0103;FS=2.237;MLEAC=1;MLEAF=0.500;MQ=61.45;MQRankSum=10.238;QD=12.72;ReadPosRankSum=-0.786;SOR=0.932;set=HC	GT:AD:AF:DP	0/1:88,57:0.39:145
chr1	152975763	rs1977734	C	A	3697.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:122,111:0.48:233
chr1	152975829	rs1970328	A	G	4686.77	.	AC=1;AF=0.500;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	0/1:196,164:0.46:360
chr1	152975941	rs1055935	C	G	4500.77	.	AC=1;AF=0.500;AN=2;DB;DP=444;set=Intersection	GT:AD:AF:DP	0/1:220,218:0.50:438
chr1	153004721	rs1334848	A	T	1658.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:102,74:0.42:176
chr1	153004778	rs3820141	C	T	3227.77	.	AC=1;AF=0.500;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	0/1:251,165:0.40:416
chr1	153004809	rs3181787	T	C	5041.77	.	AC=1;AF=0.500;AN=2;DB;DP=629;set=Intersection	GT:AD:AF:DP	0/1:368,255:0.41:623
chr1	153004848	rs3795381	T	C	11206.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.236;ClippingRankSum=0.000;DB;DP=735;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-2.072;QD=15.37;ReadPosRankSum=-1.131;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:429,300:0.41:729
chr1	153004853	rs3795382	C	T	11211.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.191;ClippingRankSum=0.000;DB;DP=747;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-2.061;QD=15.13;ReadPosRankSum=-1.548;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:434,307:0.41:741
chr1	153004983	rs12195	C	T	5871.77	.	AC=1;AF=0.500;AN=2;DB;DP=563;set=Intersection	GT:AD:AF:DP	0/1:288,260:0.47:548
chr1	153005156	rs2711	C	T	8122.77	.	AC=1;AF=0.500;AN=2;DB;DP=789;set=Intersection	GT:AD:AF:DP	0/1:386,393:0.50:779
chr1	153122310	rs510277	G	A	2010.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr1	153233510	rs6661601	A	G	2495.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:144,122:0.46:266
chr1	153233991	rs11275959	A	ACTCTGGCGGCGG	1647.73	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:58,43:0.43:101
chr1	153277423	rs843971	C	T	2195.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:130,101:0.44:231
chr1	153277660	rs2771112	A	T	1727.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:71,79:0.53:150
chr1	153279462	rs66966700	TAAG	T	9122.73	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:1,208:1.00:209
chr1	153282892	rs821424	C	T	925.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:39,39:0.50:78
chr1	153283004	rs821423	C	T	10506.77	.	AC=2;AF=1.00;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	1/1:0,389:1.00:389
chr1	153283179	rs3006473	A	G	1887.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:62,83:0.57:145
chr1	153314153	rs3006448	C	A	1913.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr1	153314347	rs3006449	C	T	671.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	153315467	rs5777858	T	TAAG	3372.73	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr1	153315579	rs3014863	A	G	7222.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr1	153315784	rs1865234	T	C	3740.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr1	153320334	rs3006457	T	C	5682.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr1	153320372	rs3006458	T	G	6414.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr1	153320581	rs3006459	T	C	1524.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr1	153362788	rs41264638	T	C	2209.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:115,104:0.47:219
chr1	153410822	rs10888561	C	A	3107.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr1	153412392	rs3006428	T	G	10659.77	.	AC=2;AF=1.00;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	1/1:0,391:1.00:391
chr1	153430249	rs35971850	TG	T	14782.73	.	AC=2;AF=1.00;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	1/1:0,433:1.00:433
chr1	153431406	rs3014837	C	G	8794.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr1	153587256	rs11548102	A	T	1025.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:42,42:0.50:84
chr1	153587308	rs11548104	C	T	2007.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:102,93:0.48:195
chr1	153588208	rs9792963	G	A	1092.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:61,50:0.45:111
chr1	153588279	rs9792967	G	A	2462.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:157,122:0.44:279
chr1	153588340	rs11548103	C	T	4187.77	.	AC=1;AF=0.500;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	0/1:216,204:0.49:420
chr1	153598904	rs113541380	G	C	3524.77	.	AC=1;AF=0.500;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	0/1:247,185:0.43:432
chr1	153600778	rs3806233	G	A	2289.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:94,88:0.48:182
chr1	153604029	rs1046379	C	T	4071.77	.	AC=1;AF=0.500;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	0/1:201,191:0.49:392
chr1	153604112	rs1046381	G	A	3669.77	.	AC=1;AF=0.500;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	0/1:178,178:0.50:356
chr1	153609039	rs4845557	T	C	1827.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:101,88:0.47:189
chr1	153617736	rs148846214	C	A	3168.77	.	AC=1;AF=0.500;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	0/1:182,153:0.46:335
chr1	153635425	rs3795396	G	A	793.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:32,32:0.50:64
chr1	153636432	.	TTAC	T	1312	.	AC=1;AF=0.500;AN=2;BRF=0.23;FR=0.5000;HP=1;HapScore=1;MGOF=16;MMLQ=21;MQ=60.0;NF=24;NR=6;PP=1312;QD=43.9;SC=AATTTCAGAGTTACTACTACT;SbPval=0.76;Source=Platypus;TC=48;TCF=36;TCR=12;TR=30;WE=153636445;WS=153636424;set=Platypus	GT:AD:AF:DP	0/1:18,30:0.62:48
chr1	153636468	rs369602600	CTA	C	2358.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.341;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=9.001;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.06;ReadPosRankSum=2.564;SOR=1.754;set=HC	GT:AD:AF:DP	0/1:40,72:0.64:112
chr1	153636471	rs372540759	CT	C	1586.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.354;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=5.147;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.25;ReadPosRankSum=3.303;SOR=1.411;set=HC	GT:AD:AF:DP	0/1:47,45:0.49:92
chr1	153636472	.	T	C	1295	.	AC=1;AF=0.500;AN=2;BRF=0.31;FR=0.5000;HP=1;HapScore=1;MGOF=14;MMLQ=26;MQ=60.0;NF=51;NR=21;PP=1295;QD=18.4690446187;SC=CTACTACTACTAGTAAATAAG;SbPval=0.51;Source=Platypus;TC=111;TCF=79;TCR=32;TR=72;WE=153636480;WS=153636462;set=Platypus	GT:AD:AF:DP	1/0:39,72:0.65:111
chr1	153636860	rs4351684	A	G	4229.77	.	AC=1;AF=0.500;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	0/1:203,202:0.50:405
chr1	153637617	rs3862047	G	A	760.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:38,36:0.49:74
chr1	153642835	rs6663046	G	C	4328.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr1	153656352	rs9662664	T	G	823.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:43,35:0.45:78
chr1	153658480	rs11264236	G	A	1235.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:69,51:0.42:120
chr1	153660514	rs11295572	AC	A	907.73	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:32,38:0.54:70
chr1	153661374	rs34402066	CG	C	9208.73	.	AC=1;AF=0.500;AN=2;DB;DP=618;set=Intersection	GT:AD:AF:DP	0/1:308,303:0.50:611
chr1	153665919	rs5777879	T	TC	697.73	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:28,27:0.49:55
chr1	153701376	rs12074957	G	C	1104.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.42;QD=26.95;SOR=0.954;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	153742535	rs144771560	GTGT	G	113.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.569;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=9.276;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.99;ReadPosRankSum=2.555;SOR=1.426;set=HC	GT:AD:AF:DP	0/1:12,7:0.37:19
chr1	153742609	.	G	GT	135.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.218;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=5.593;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.68;ReadPosRankSum=1.320;SOR=0.033;set=HC	GT:AD:AF:DP	0/1:21,8:0.28:29
chr1	153742610	.	G	GT	281.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.806;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;FS=5.441;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.39;ReadPosRankSum=2.013;SOR=0.036;set=HC	GT:AD:AF:DP	0/1:20,10:0.33:30
chr1	153743234	rs6675978	T	C	2692.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:116,125:0.52:241
chr1	153743289	rs12068256	C	G	2090.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:97,97:0.50:194
chr1	153743317	rs4345834	G	A	1492.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:65,68:0.51:133
chr1	153750207	rs139720425	C	CCTT	6893.73	.	AC=1;AF=0.500;AN=2;DB;DP=470;set=Intersection	GT:AD:AF:DP	0/1:285,180:0.39:465
chr1	153750214	rs374974027	TC	T	6893.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.852;ClippingRankSum=0.000;DB;DP=490;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=2.172;QD=14.16;ReadPosRankSum=2.236;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:297,190:0.39:487
chr1	153784666	rs11264420	CT	C,CTT	952.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.075;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=2.420;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.16;MQRankSum=0.624;QD=8.82;ReadPosRankSum=-0.386;SOR=0.430;set=HC	GT:AD:AF:DP	1/2:14,49,45:0.45,0.42:108
chr1	153790501	rs4363451	C	T	1111.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:74,56:0.43:130
chr1	153790790	rs35175263	CT	C	80.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.185;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.67;ReadPosRankSum=-0.071;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:10,12:0.55:22
chr1	153800931	rs144104082	TACACACAC	T	241.73	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:9,11:0.55:20
chr1	153904574	rs11264620	T	C	1002.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:52,46:0.47:98
chr1	153906397	rs11264621	A	G	2631.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:114,122:0.52:236
chr1	153907278	rs3835302	CCTGCTGCTG	C	3134.73	.	AC=1;AF=0.500;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	0/1:202,143:0.41:345
chr1	153909069	rs1043608	G	C	2773.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:96,127:0.57:223
chr1	153911321	rs80093879	A	T	1979.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:101,95:0.48:196
chr1	153913699	rs1110165	T	G	1934.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:71,86:0.55:157
chr1	153913770	rs2252508	A	G	3190.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:135,145:0.52:280
chr1	153917369	rs6680140	C	T	208.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:16,9:0.36:25
chr1	153920564	rs10559	A	G	1865.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:77,79:0.51:156
chr1	153921404	rs114300860	G	A	3360.77	.	AC=1;AF=0.500;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	0/1:191,165:0.46:356
chr1	153921483	rs111395902	AC	A	3160.73	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:96,115:0.55:211
chr1	153926078	rs11264680	T	C	1058.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:25,50:0.67:75
chr1	153941514	rs11264743	C	T	3727.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:160,163:0.50:323
chr1	153946189	rs41265209	G	C	2395.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:91,111:0.55:202
chr1	153954674	rs10908578	T	C	1326.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:72,67:0.48:139
chr1	153954778	rs371625659	AAC	A	155.73	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:26,10:0.28:36
chr1	153955601	.	C	CA	349.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.330;ClippingRankSum=0.000;DP=328;ExcessHet=3.0103;FS=1.210;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=2.023;QD=1.15;ReadPosRankSum=-0.910;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:241,63:0.21:304
chr1	153964396	rs34521811	C	CAA	5962.73	.	AC=1;AF=0.500;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	0/1:194,160:0.45:354
chr1	153974621	rs6701341	C	T	566.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:22,23:0.51:45
chr1	153984897	.	CTCCT	C	9316.73	.	AC=1;AF=0.500;AN=2;DP=580;set=Intersection	GT:AD:AF:DP	0/1:301,245:0.45:546
chr1	153994647	rs11264875	C	T	1668.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:74,77:0.51:151
chr1	154027381	rs3834774	AT	A	877.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.574;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=7.465;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.142;QD=7.08;ReadPosRankSum=-0.024;SOR=0.253;set=HC	GT:AD:AF:DP	0/1:53,71:0.57:124
chr1	154029450	rs11264964	G	C	1676.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:64,74:0.54:138
chr1	154061855	rs2066135	T	G	5236.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr1	154076366	rs7521047	T	C	99.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:4,5:0.56:9
chr1	154091017	rs6661101	G	C	918.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:38,36:0.49:74
chr1	154108387	rs3001361	G	A	9358.77	.	AC=2;AF=1.00;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	1/1:0,350:1.00:350
chr1	154110733	rs11318139	GA	G	1551.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.273;ClippingRankSum=0.000;DB;DP=220;ExcessHet=3.0103;FS=1.147;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.265;QD=7.84;ReadPosRankSum=0.236;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:91,107:0.54:198
chr1	154112167	rs2500223	A	C	518.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.676;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=4.697;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.37;ReadPosRankSum=2.972;SOR=0.260;set=HC	GT:AD:AF:DP	0/1:24,38:0.61:62
chr1	154141908	rs4845364	A	G	2745.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:133,126:0.49:259
chr1	154178185	rs370938534	CT	C	139.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.165;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=1.912;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.25;ReadPosRankSum=0.301;SOR=0.947;set=HC	GT:AD:AF:DP	0/1:86,26:0.23:112
chr1	154186918	rs12408458	G	C	2733.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:118,131:0.53:249
chr1	154192143	rs9803862	G	A	1015.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:49,46:0.48:95
chr1	154192463	rs34176728	G	GT	702.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.734;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=6.337;MLEAC=1;MLEAF=0.500;MQ=60.39;MQRankSum=2.052;QD=7.99;ReadPosRankSum=1.523;SOR=0.241;set=HC	GT:AD:AF:DP	0/1:40,48:0.55:88
chr1	154208877	rs3762339	A	G	391.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:25,18:0.42:43
chr1	154218550	rs11301778	CT	C	131.73	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:5,7:0.58:12
chr1	154218639	rs4040743	TTCAG	T	1096.73	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:28,29:0.51:57
chr1	154227239	rs1194604	C	A	1511.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:93,73:0.44:166
chr1	154227292	rs11412846	G	GT	1593.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.214;ClippingRankSum=0.000;DB;DP=358;ExcessHet=3.0103;FS=4.500;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=1.210;QD=4.73;ReadPosRankSum=1.780;SOR=0.971;set=HC	GT:AD:AF:DP	0/1:192,145:0.43:337
chr1	154228287	rs1194603	T	C	3250.77	.	AC=1;AF=0.500;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	0/1:202,164:0.45:366
chr1	154243097	rs2282227	G	A	3318.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:88,94:0.52:182
chr1	154243115	rs1044013	C	T	2710.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:62,69:0.53:131
chr1	154245142	rs11265425	T	G	1648.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:97,78:0.45:175
chr1	154305010	rs1209264	A	G	1845.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr1	154310048	rs1760795	C	G	10891.77	.	AC=2;AF=1.00;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	1/1:0,382:1.00:382
chr1	154313232	rs1194588	T	C	2366.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:1,79:0.99:80
chr1	154317153	rs1194587	C	T	8694.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:1,322:1.00:323
chr1	154317418	rs1194586	T	C	2616.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr1	154321072	rs1194591	A	G	3846.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr1	154401972	rs6694817	T	C	2877.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:120,133:0.53:253
chr1	154407119	.	G	A	2385.77	.	AC=1;AF=0.500;AN=2;DP=254;set=Intersection	GT:AD:AF:DP	0/1:130,120:0.48:250
chr1	154407419	rs7518199	A	C	621.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:30,26:0.46:56
chr1	154407713	rs7521458	T	C	1338.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:73,69:0.49:142
chr1	154408340	rs4845371	T	C	349.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:11,14:0.56:25
chr1	154409893	rs71586015	A	AT	959.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.516;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.173;QD=5.92;ReadPosRankSum=-0.310;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:82,80:0.49:162
chr1	154420402	rs7512646	G	C	415.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:27,21:0.44:48
chr1	154420754	rs74601996	G	A	361.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:8,14:0.64:22
chr1	154426970	rs2228145	A	C	2344.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:114,110:0.49:224
chr1	154437896	rs2229238	T	C	4319.77	.	AC=1;AF=0.500;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	0/1:186,182:0.49:368
chr1	154442960	rs11265621	G	A	1946.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:78,84:0.52:162
chr1	154459197	rs4845633	C	G	4136.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr1	154474131	rs4845635	C	G	12001.77	.	AC=2;AF=1.00;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	1/1:1,437:1.00:438
chr1	154474557	rs6703672	T	C	644.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	154479657	rs10654618	C	CAT	3509.73	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr1	154479670	rs6664608	C	T	919.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:49,42:0.46:91
chr1	154492702	rs10908842	G	A	1491.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:59,68:0.54:127
chr1	154493721	rs6684225	T	C	3366.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr1	154514331	rs4845647	C	A	515.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:18,24:0.57:42
chr1	154515193	rs58881140	C	T	1676.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:47,78:0.62:125
chr1	154516477	rs12750774	G	A	7912.77	.	AC=1;AF=0.500;AN=2;DB;DP=826;set=Intersection	GT:AD:AF:DP	0/1:423,385:0.48:808
chr1	154516571	rs6678164	T	C	22430.77	.	AC=2;AF=1.00;AN=2;DB;DP=630;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.60;SOR=1.105;set=HC	GT:AD:AF:DP	1/1:0,630:1.00:630
chr1	154516571	.	TATGCACG	CATGCACA,CATGCACG	2962	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.47;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=7;MMLQ=28;MQ=60.0;NF=66,151;NR=118,255;PP=2944,2962;QD=20;SC=TTTTCTGGGCTATGCACGTCA;SbPval=0.6;Source=Platypus;TC=406;TCF=151;TCR=255;TR=184,406;WE=154516586;WS=154516561;set=Platypus	GT:AF:DP	0/1:0.45:406
chr1	154516578	rs3811448	G	A	6183.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.512;ClippingRankSum=0.000;DB;DP=588;ExcessHet=3.0103;FS=0.529;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.52;ReadPosRankSum=0.933;SOR=0.769;set=HC	GT:AD:AF:DP	0/1:295,293:0.50:588
chr1	154517217	rs6681207	T	C	1993.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:91,89:0.49:180
chr1	154517504	rs3811449	G	A	4275.77	.	AC=1;AF=0.500;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	0/1:186,194:0.51:380
chr1	154519800	rs113168174	C	CA	1000.73	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:35,33:0.49:68
chr1	154523215	rs4520411	C	T	1003.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	154523588	rs10908849	T	G	1730.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	154524973	rs12144146	A	G	2169.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:124,108:0.47:232
chr1	154528086	rs4078519	T	C	2881.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr1	154561261	rs9427095	G	C	2231.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr1	154561925	rs1127309	C	T	11275.77	.	AC=2;AF=1.00;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	1/1:0,414:1.00:414
chr1	154562624	rs201932953	CG	C	47.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.437;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=14.699;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.65;ReadPosRankSum=-0.536;SOR=0.013;set=HC	GT:AD:AF:DP	0/1:22,7:0.24:29
chr1	154562625	rs7532276	G	C	398.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.468;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=12.802;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.75;ReadPosRankSum=0.660;SOR=3.912;set=HC	GT:AD:AF:DP	0/1:8,21:0.72:29
chr1	154562629	rs60407842	C	A	494.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.530;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=9.294;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.24;ReadPosRankSum=3.687;SOR=2.584;set=HC	GT:AD:AF:DP	0/1:15,29:0.66:44
chr1	154571174	rs143817514	T	TGGA	1644.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	154574820	rs1466731	T	C	14726.77	.	AC=2;AF=1.00;AN=2;DB;DP=568;set=Intersection	GT:AD:AF:DP	1/1:0,563:1.00:563
chr1	154575040	rs1802645	C	T	4195.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr1	154580348	rs71586026	G	GAC	22024.73	.	AC=1;AF=0.500;AN=2;DB;DP=1219;set=Intersection	GT:AD:AF:DP	0/1:131,983:0.88:1114
chr1	154600372	rs6426859	A	G	5156.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr1	154600533	rs28411375	A	G	2985.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:156,145:0.48:301
chr1	154744807	rs1051614	C	G	5331.77	.	AC=1;AF=0.500;AN=2;DB;DP=517;set=Intersection	GT:AD:AF:DP	0/1:268,242:0.47:510
chr1	154744852	rs1131820	A	G	3177.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:153,146:0.49:299
chr1	154744937	rs11589471	C	T	1200.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:38,52:0.58:90
chr1	154832290	rs1061122	C	T	3460.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:132,163:0.55:295
chr1	154832304	rs4845397	T	C	2490.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:138,108:0.44:246
chr1	154832322	rs1218586	A	C	7427.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr1	154842199	.	G	GGCTGCTGCTGCT,GGCTGCTGCTGCTGCT	5591.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=279;set=Intersection	GT:AF:DP	1/2:0.49,0.39:163
chr1	154842330	.	TTGC	T	343.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.991;ClippingRankSum=0.000;DP=440;ExcessHet=3.0103;FS=0.648;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=0.000;QD=0.94;ReadPosRankSum=0.059;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:331,36:0.10:367
chr1	154917701	rs906594	A	G	5042.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:2,183:0.99:185
chr1	154948327	rs12087657	G	T	2196.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:66,94:0.59:160
chr1	154988957	rs2242195	A	G	7021.77	.	AC=1;AF=0.500;AN=2;DB;DP=772;set=Intersection	GT:AD:AF:DP	0/1:427,333:0.44:760
chr1	154995920	rs72702247	G	A	4571.77	.	AC=1;AF=0.500;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	0/1:208,200:0.49:408
chr1	155003954	rs11582128	G	A	525.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:27,23:0.46:50
chr1	155006450	rs74520550	CC	AG	3311.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;JOINED;set=Intersection	GT:AD:AF:DP	0/1:64,82:0.56:146
chr1	155012139	rs115888432	G	A	634.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:23,24:0.51:47
chr1	155014426	rs55668940	G	A	408.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:24,17:0.41:41
chr1	155026114	rs6660884	C	T	1212.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:38,52:0.58:90
chr1	155026942	rs6427128	A	C	12216.77	.	AC=2;AF=1.00;AN=2;DB;DP=469;set=Intersection	GT:AD:AF:DP	1/1:0,466:1.00:466
chr1	155028522	rs11264302	G	A	10419.77	.	AC=1;AF=0.500;AN=2;DB;DP=1050;set=Intersection	GT:AD:AF:DP	0/1:533,505:0.49:1038
chr1	155030557	rs11264303	A	C	12389.77	.	AC=1;AF=0.500;AN=2;DB;DP=1219;set=Intersection	GT:AD:AF:DP	0/1:604,607:0.50:1211
chr1	155031376	rs12023499	C	T	1463.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:75,67:0.47:142
chr1	155033317	rs11264304	T	C	5905.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr1	155033918	rs41264285	C	T	3625.77	.	AC=1;AF=0.500;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	0/1:182,168:0.48:350
chr1	155057499	rs3766918	A	G	4551.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:2,159:0.99:161
chr1	155058816	rs182820721	T	C	4643.77	.	AC=1;AF=0.500;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	0/1:185,195:0.51:380
chr1	155058820	rs112260947	T	TGCTGCC	7261.73	.	AC=1;AF=0.500;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	0/1:182,188:0.51:370
chr1	155059035	rs11449003	T	TG	3979.73	.	AC=1;AF=0.500;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	0/1:211,186:0.47:397
chr1	155106550	rs9297	A	G	5258.77	.	AC=1;AF=0.500;AN=2;DB;DP=544;set=Intersection	GT:AD:AF:DP	0/1:284,254:0.47:538
chr1	155108287	rs11264333	G	A	1653.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:64,70:0.52:134
chr1	155142210	rs4421576	A	G	6055.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr1	155142229	rs4276914	G	A	6028.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr1	155148781	rs4971059	G	A	1342.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:71,57:0.45:128
chr1	155149718	rs3814316	G	A	12241.77	.	AC=1;AF=0.500;AN=2;DB;DP=1255;set=Intersection	GT:AD:AF:DP	0/1:655,585:0.47:1240
chr1	155162067	rs4072037	C	T	8354.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chr1	155167786	rs41264915	A	G	5564.77	.	AC=1;AF=0.500;AN=2;DB;DP=546;set=Intersection	GT:AD:AF:DP	0/1:271,266:0.50:537
chr1	155172725	rs35154152	T	C	6266.77	.	AC=1;AF=0.500;AN=2;DB;DP=629;set=Intersection	GT:AD:AF:DP	0/1:324,303:0.48:627
chr1	155173527	rs67579710	G	A	169.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:9,9:0.50:18
chr1	155178782	rs760077	A	T	8545.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chr1	155181843	rs2974935	G	T	3102.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr1	155182164	rs2075570	C	T	12475.77	.	AC=2;AF=1.00;AN=2;DB;DP=465;set=Intersection	GT:AD:AF:DP	1/1:2,461:1.00:463
chr1	155184975	rs140081212	A	G	17104.77	.	AC=2;AF=1.00;AN=2;DB;DP=631;set=Intersection	GT:AD:AF:DP	1/1:0,618:1.00:618
chr1	155186729	rs28445596	T	C	7067.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr1	155186742	rs1057941	G	A	2168.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:116,105:0.48:221
chr1	155202689	rs10796940	A	C	4389.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr1	155203060	rs56310840	G	A	6440.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr1	155205669	rs28559737	G	T	14483.77	.	AC=2;AF=1.00;AN=2;DB;DP=521;set=Intersection	GT:AD:AF:DP	1/1:0,515:1.00:515
chr1	155206341	rs9628662	T	G	5856.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr1	155208183	rs114099990	T	C	788.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.73;QD=32.87;SOR=6.439;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	155209360	rs2075569	C	T	2876.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr1	155217435	.	AGG	A	1485.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.560;ClippingRankSum=0.000;DP=60;ExcessHet=3.0103;FS=1.069;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.62;ReadPosRankSum=-2.770;SOR=0.461;set=HC	GT:AD:AF:DP	0/1:20,38:0.66:58
chr1	155217436	.	GGA	ATT	1080	.	AC=1;AF=0.500;AN=2;BRF=0.47;FR=0.5000;HP=1;HapScore=2;MGOF=0;MMLQ=28;MQ=60.0;NF=10;NR=9;PP=1080;QD=60.1825197296;SC=CCCAGAGGTAGGAGGGAAAGG;SbPval=0.29;Source=Platypus;TC=33;TCF=14;TCR=19;TR=19;WE=155217446;WS=155217426;set=Platypus	GT:AD:AF:DP	1/0:14,19:0.58:33
chr1	155217438	rs199735676	A	ATT	1485.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.314;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=1.069;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.62;ReadPosRankSum=-2.636;SOR=0.461;set=HC	GT:AD:AF:DP	0/1:20,38:0.66:58
chr1	155218168	rs2075568	T	C	5523.77	.	AC=1;AF=0.500;AN=2;DB;DP=536;set=Intersection	GT:AD:AF:DP	0/1:266,265:0.50:531
chr1	155218365	rs734073	T	C	761.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:33,30:0.48:63
chr1	155221837	rs2072647	C	A	1031.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:39,45:0.54:84
chr1	155224091	rs2075566	C	A	2972.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:119,131:0.52:250
chr1	155224301	rs2242577	C	A	3200.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:127,142:0.53:269
chr1	155230131	rs1142287	C	T	11142.77	.	AC=2;AF=1.00;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	1/1:2,407:1.00:409
chr1	155231545	rs2242576	T	G	6276.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:2,205:0.99:207
chr1	155239624	rs2361543	G	A	1869.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr1	155255837	rs11264352	T	C	2308.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr1	155257492	rs11264355	C	G	3553.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr1	155260350	rs1052177	A	G	10440.77	.	AC=2;AF=1.00;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	1/1:0,388:1.00:388
chr1	155260383	rs1052176	G	T	13691.77	.	AC=2;AF=1.00;AN=2;DB;DP=529;set=Intersection	GT:AD:AF:DP	1/1:0,511:1.00:511
chr1	155265177	rs2071053	A	G	14657.77	.	AC=2;AF=1.00;AN=2;DB;DP=561;set=Intersection	GT:AD:AF:DP	1/1:0,541:1.00:541
chr1	155265446	rs8177971	C	A	7040.77	.	AC=1;AF=0.500;AN=2;DB;DP=639;set=Intersection	GT:AD:AF:DP	0/1:303,327:0.52:630
chr1	155269776	rs3020781	A	G	3264.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr1	155279482	rs2297480	T	G	518.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	155280104	rs35556344	C	CT	568.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.162;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=6.771;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.17;ReadPosRankSum=1.089;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:19,43:0.69:62
chr1	155289545	rs11264361	T	G	7570.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:2,287:0.99:289
chr1	155291431	rs12741581	C	T	1399.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:85,62:0.42:147
chr1	155294274	rs914616	A	G	7568.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr1	155294772	rs4971075	A	G	9695.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr1	155311658	rs80187273	C	T	1408.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:87,62:0.42:149
chr1	155313047	rs4971051	T	C	2970.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr1	155330237	.	AT	A	59.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.224;ClippingRankSum=0.000;DP=128;ExcessHet=3.0103;FS=3.939;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.000;QD=0.62;ReadPosRankSum=-1.106;SOR=0.323;set=HC	GT:AD:AF:DP	0/1:73,23:0.24:96
chr1	155385782	.	T	TA	146.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.377;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=1.606;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.24;ReadPosRankSum=-0.581;SOR=0.392;set=HC	GT:AD:AF:DP	0/1:16,12:0.43:28
chr1	155408635	rs4971053	T	C	11562.77	.	AC=2;AF=1.00;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	1/1:0,429:1.00:429
chr1	155429490	rs10796946	A	T	2609.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr1	155429725	rs10908466	A	C	2265.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr1	155532316	rs12403379	T	C	26035.77	.	AC=2;AF=1.00;AN=2;DB;DP=597;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.81;QD=44.35;SOR=0.982;set=HC	GT:AD:AF:DP	1/1:0,587:1.00:587
chr1	155532325	rs12403380	T	C	28498.77	.	AC=2;AF=1.00;AN=2;DB;DP=620;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.82;QD=46.64;SOR=1.028;set=HC	GT:AD:AF:DP	1/1:0,611:1.00:611
chr1	155532332	rs34869594	T	C	29559.77	.	AC=2;AF=1.00;AN=2;DB;DP=639;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.82;QD=46.92;SOR=1.079;set=HC	GT:AD:AF:DP	1/1:0,630:1.00:630
chr1	155532341	rs61812107	T	C	30250.77	.	AC=2;AF=1.00;AN=2;DB;DP=718;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.84;QD=42.73;SOR=1.131;set=HC	GT:AD:AF:DP	1/1:0,708:1.00:708
chr1	155581311	rs141265144	T	C	9025.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.06;QD=26.94;SOR=1.192;set=HC	GT:AD:AF:DP	1/1:0,335:1.00:335
chr1	155581757	rs145150302	A	G	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.645;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.500;MQ=41.77;MQRankSum=-1.645;QD=7.55;ReadPosRankSum=-0.126;SOR=2.833;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr1	155583937	rs147713038	A	G	1077.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.26;QD=33.68;SOR=6.994;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	155618415	rs5777949	CT	C	11916.73	.	AC=2;AF=1.00;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	1/1:0,413:1.00:413
chr1	155630752	rs3738590	A	G	9965.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	1/1:0,360:1.00:360
chr1	155631307	.	A	AACACACACAC,AACACACAC	658.73	.	AC=2,0;AF=1.00,0.00;AN=2;DP=50;set=Intersection	GT:AF:DP	1/1:1.00:14
chr1	155650388	.	CA	C	875.73	.	AC=1;AF=0.500;AN=2;DP=58;set=Intersection	GT:AD:AF:DP	0/1:28,27:0.49:55
chr1	155658085	rs2666826	T	C	13830.77	.	AC=2;AF=1.00;AN=2;DB;DP=484;set=Intersection	GT:AD:AF:DP	1/1:0,481:1.00:481
chr1	155679543	.	C	CT	170.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.993;ClippingRankSum=0.000;DP=159;ExcessHet=3.0103;FS=0.893;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.18;ReadPosRankSum=-1.067;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:111,34:0.23:145
chr1	155686739	rs377724521	CA	C	234.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.919;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=2.772;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=2.239;QD=1.44;ReadPosRankSum=0.257;SOR=0.419;set=HC	GT:AD:AF:DP	0/1:117,46:0.28:163
chr1	155691191	rs71862030	GTA	G	125.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.929;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.34;MQRankSum=1.965;QD=3.93;ReadPosRankSum=-0.815;SOR=1.077;set=HC	GT:AD:AF:DP	0/1:25,7:0.22:32
chr1	155695904	.	C	CT	101.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.997;ClippingRankSum=0.000;DP=109;ExcessHet=3.0103;FS=2.464;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=2.339;QD=1.75;ReadPosRankSum=1.167;SOR=1.749;set=HC	GT:AD:AF:DP	0/1:42,16:0.28:58
chr1	155701055	rs111619259	C	CA	77.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.133;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=9.930;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.56;ReadPosRankSum=-1.683;SOR=1.800;set=HC	GT:AD:AF:DP	0/1:112,27:0.19:139
chr1	155715641	rs11264409	G	A	610.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.01;QD=25.45;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	155719111	rs2002356	A	C	6161.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr1	155735012	rs2297775	T	C	12282.77	.	AC=2;AF=1.00;AN=2;DB;DP=444;set=Intersection	GT:AD:AF:DP	1/1:0,432:1.00:432
chr1	155737385	rs849712	C	T	1451.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.07;QD=26.88;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr1	155746340	rs60525991	CT	C	349.74	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:2,23:0.92:25
chr1	155755097	rs822021	G	A	8820.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	1/1:0,336:1.00:336
chr1	155785578	rs148569012	CAACT	C	9590.73	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr1	155823002	rs822491	T	C	3316.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr1	155829360	rs1749412	C	A	844.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	155829511	rs3820594	C	T	6328.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:6,244:0.98:250
chr1	155837865	rs822522	G	C	14459.77	.	AC=2;AF=1.00;AN=2;DB;DP=529;set=Intersection	GT:AD:AF:DP	1/1:0,527:1.00:527
chr1	155838267	rs822521	T	C	16069.77	.	AC=2;AF=1.00;AN=2;DB;DP=599;set=Intersection	GT:AD:AF:DP	1/1:1,588:1.00:589
chr1	155870416	rs1749409	G	A	16589.77	.	AC=2;AF=1.00;AN=2;DB;DP=622;set=Intersection	GT:AD:AF:DP	1/1:0,616:1.00:616
chr1	155880159	rs867549	T	C	2139.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:108,100:0.48:208
chr1	155880391	rs867550	T	C	3656.77	.	AC=1;AF=0.500;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	0/1:207,175:0.46:382
chr1	155880573	rs493446	C	G	11196.77	.	AC=2;AF=1.00;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	1/1:0,410:1.00:410
chr1	155880760	rs5777961	C	CA	2412.73	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	155891045	rs625658	A	C	2622.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:115,111:0.49:226
chr1	155891857	rs34107786	A	AT	226.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.571;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.05;ReadPosRankSum=-1.827;SOR=0.829;set=HC	GT:AD:AF:DP	0/1:34,22:0.39:56
chr1	155891877	rs4020747	C	CAG	2247.73	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	155899020	rs539602	A	T	4253.77	.	AC=1;AF=0.500;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	0/1:209,198:0.49:407
chr1	155903310	rs4661150	T	C	2889.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr1	155903408	rs4661151	C	T	2623.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:173,128:0.43:301
chr1	155904177	rs2275079	T	C	44800.77	.	AC=2;AF=1.00;AN=2;DB;DP=1660;set=Intersection	GT:AD:AF:DP	1/1:1,1653:1.00:1654
chr1	155904392	rs2275081	G	A	2892.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr1	155912486	rs2152051	T	C	13843.77	.	AC=2;AF=1.00;AN=2;DB;DP=546;set=Intersection	GT:AD:AF:DP	1/1:0,530:1.00:530
chr1	155917880	rs1010033	T	A	13273.77	.	AC=2;AF=1.00;AN=2;DB;DP=514;set=Intersection	GT:AD:AF:DP	1/1:2,500:1.00:502
chr1	155927752	rs2364403	G	A	864.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:49,39:0.44:88
chr1	155928232	rs2364404	T	C	3836.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.39;SOR=1.053;set=HC	GT:AD:AF:DP	1/1:0,95:1.00:95
chr1	155928242	rs2886069	C	T	3483.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.24;SOR=1.300;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr1	155931368	rs4661175	G	A	2366.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:76,105:0.58:181
chr1	155934683	rs11295795	CA	C	275.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.719;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=10.212;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.13;ReadPosRankSum=-0.109;SOR=0.060;set=HC	GT:AD:AF:DP	0/1:15,30:0.67:45
chr1	155935244	rs2297649	C	A	3042.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:125,138:0.52:263
chr1	155954945	.	C	CA	62.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.164;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=2.764;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.41;ReadPosRankSum=0.369;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:18,8:0.31:26
chr1	155955076	rs4661216	A	G	5740.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr1	155979571	.	G	GT	71.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.502;ClippingRankSum=0.000;DP=68;ExcessHet=3.0103;FS=2.665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.16;ReadPosRankSum=2.453;SOR=0.379;set=HC	GT:AD:AF:DP	0/1:49,13:0.21:62
chr1	155981489	rs1475766	C	G	289.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:13,11:0.46:24
chr1	155989179	.	C	CT	63.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.985;ClippingRankSum=0.000;DP=59;ExcessHet=3.0103;FS=8.221;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.77;ReadPosRankSum=0.222;SOR=0.075;set=HC	GT:AD:AF:DP	0/1:27,9:0.25:36
chr1	156011444	rs2297792	T	C	2735.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:143,133:0.48:276
chr1	156131050	rs191795474	A	T	246.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:3,9:0.75:12
chr1	156131095	.	C	CGGGGCGG,CGGGGGGG	907	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.49;FR=0.5000,0.5000;HP=4;HapScore=2;MGOF=29;MMLQ=17;MQ=57.6;NF=10,10;NR=4,4;PP=907,368;QD=66.2857142857;SC=GCTGGGGGGTCGGGGCGCCCG;SbPval=0.43;Source=Platypus;TC=47;TCF=36;TCR=11;TR=14,14;WE=156131108;WS=156131085;set=Platypus	GT:AF:DP	0/1:0.30:47
chr1	156132909	rs143862668	GCA	G	3740.73	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:95,98:0.51:193
chr1	156133038	rs7555253	T	C	216.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.755;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=11.224;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.19;ReadPosRankSum=0.020;SOR=0.045;set=HC	GT:AD:AF:DP	0/1:22,13:0.37:35
chr1	156146218	rs12401573	C	T	13844.77	.	AC=2;AF=1.00;AN=2;DB;DP=521;set=Intersection	GT:AD:AF:DP	1/1:0,500:1.00:500
chr1	156169610	rs2072499	A	G	1924.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:85,82:0.49:167
chr1	156182710	rs2241107	T	C	593.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:14,23:0.62:37
chr1	156202173	rs1052053	A	G	4517.77	.	AC=1;AF=0.500;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	0/1:226,222:0.50:448
chr1	156203572	.	C	CT	53.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.132;ClippingRankSum=0.000;DP=102;ExcessHet=3.0103;FS=6.599;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.96;ReadPosRankSum=-0.219;SOR=0.130;set=HC	GT:AD:AF:DP	0/1:44,12:0.21:56
chr1	156206121	rs1052067	G	A	4998.77	.	AC=1;AF=0.500;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	0/1:205,232:0.53:437
chr1	156215562	rs2075166	G	A	3788.77	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:158,176:0.53:334
chr1	156215899	rs2075165	G	A	3189.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:179,155:0.46:334
chr1	156220056	rs1043165	T	C	2504.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:95,112:0.54:207
chr1	156230429	rs12139321	A	G	845.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:42,37:0.47:79
chr1	156233143	rs2273832	A	G	1385.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:77,65:0.46:142
chr1	156233189	rs2273833	C	T	3023.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:131,139:0.51:270
chr1	156244559	rs12122180	G	A	2238.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:149,111:0.43:260
chr1	156246792	rs2277870	C	T	266.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:8,12:0.60:20
chr1	156247907	rs2248273	C	T	1029.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:39,42:0.52:81
chr1	156248609	rs10752615	T	C	1602.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:67,76:0.53:143
chr1	156252291	rs3806409	A	G	1086.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:74,59:0.44:133
chr1	156255456	rs6684514	G	A	9933.77	.	AC=1;AF=0.500;AN=2;DB;DP=1025;set=Intersection	GT:AD:AF:DP	0/1:535,482:0.47:1017
chr1	156255833	rs2842883	G	C	3004.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr1	156263097	rs10908494	A	G	4150.77	.	AC=1;AF=0.500;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	0/1:169,185:0.52:354
chr1	156263940	rs10908495	T	C	1997.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:105,98:0.48:203
chr1	156264000	rs10908496	G	A	2904.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:131,137:0.51:268
chr1	156279176	rs10908499	G	C	3066.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:152,140:0.48:292
chr1	156279210	rs3001784	T	C	4869.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr1	156280296	rs72414608	GATAA	G	1568.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.418;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.65;MQRankSum=2.614;QD=17.24;ReadPosRankSum=1.240;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:47,44:0.48:91
chr1	156280671	rs10908500	A	T	1799.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:61,72:0.54:133
chr1	156281020	rs12132794	G	C	3500.77	.	AC=1;AF=0.500;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	0/1:191,159:0.45:350
chr1	156287360	rs2249790	C	T	1014.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:105,57:0.35:162
chr1	156287403	rs2296374	T	C	1396.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:43,61:0.59:104
chr1	156288906	.	G	GT	160.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.962;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.238;QD=3.92;ReadPosRankSum=0.715;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:24,17:0.41:41
chr1	156303527	rs2764402	C	T	1187.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:36,51:0.59:87
chr1	156304782	rs3762281	A	G	506.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:20,20:0.50:40
chr1	156308031	rs139949895	GGA	G	3738.73	.	AC=1;AF=0.500;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	0/1:149,113:0.43:262
chr1	156347131	rs2245623	G	A	18211.77	.	AC=2;AF=1.00;AN=2;DB;DP=676;set=Intersection	GT:AD:AF:DP	1/1:0,670:1.00:670
chr1	156351066	rs942679	C	A	7480.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr1	156374256	rs3431	C	T	2183.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:98,99:0.50:197
chr1	156376680	rs6662064	A	G	988.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	156446242	rs2274316	C	A	2087.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:138,103:0.43:241
chr1	156446450	rs12131289	C	T	971.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:77,52:0.40:129
chr1	156446903	rs2274317	T	C	2828.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:160,144:0.47:304
chr1	156450719	rs1185700	G	A	3583.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:133,164:0.55:297
chr1	156450740	rs1925950	G	A	2617.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:155,137:0.47:292
chr1	156452870	rs2282286	G	A	2144.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:67,85:0.56:152
chr1	156453096	rs28730744	G	T	4211.77	.	AC=1;AF=0.500;AN=2;DB;DP=470;set=Intersection	GT:AD:AF:DP	0/1:244,224:0.48:468
chr1	156496188	rs6427315	A	G	2668.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr1	156503541	rs6699212	T	C	1893.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr1	156509552	rs1171570	C	G	3189.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr1	156520173	rs1778819	T	A	4880.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr1	156526234	rs2489139	C	T	4980.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr1	156526387	rs11264498	C	G	11431.77	.	AC=2;AF=1.00;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	1/1:0,421:1.00:421
chr1	156526444	rs2488269	T	C	8000.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr1	156531871	rs1171545	A	G	6103.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr1	156532344	rs7548309	T	G	3680.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr1	156532908	rs16837492	C	A	10232.77	.	AC=2;AF=1.00;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	1/1:0,378:1.00:378
chr1	156532977	rs1171547	T	C	10330.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	1/1:0,376:1.00:376
chr1	156534525	rs4661184	A	C	1420.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	156534539	rs4661185	G	A	980.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	156536123	rs2066378	T	C	2465.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.52;SOR=3.300;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr1	156536133	rs4382715	A	G	2903.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.33;SOR=2.802;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr1	156536221	rs2066377	G	C	7620.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr1	156536251	rs947662	T	C	10296.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:0,380:1.00:380
chr1	156536353	rs947663	A	G	12626.77	.	AC=2;AF=1.00;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	1/1:2,469:1.00:471
chr1	156536480	rs947664	T	C	4426.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr1	156539154	rs6427319	T	C	4434.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr1	156551848	rs6682716	A	G	3231.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr1	156553762	rs11264502	A	C	3044.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr1	156556321	rs10796961	G	A	15823.77	.	AC=2;AF=1.00;AN=2;DB;DP=607;set=Intersection	GT:AD:AF:DP	1/1:0,602:1.00:602
chr1	156561414	rs6698493	T	C	416.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	156561557	rs149629319	G	GGGGCCGGGCC	1567.73	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:2,59:0.97:61
chr1	156561651	rs7516274	G	C	7619.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr1	156562008	rs1925949	G	A	3128.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr1	156562143	rs942959	G	A	1917.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr1	156563375	rs6427321	G	A	10096.77	.	AC=2;AF=1.00;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	1/1:0,367:1.00:367
chr1	156563726	rs6427322	A	C	6467.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;MQ=59.98;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr1	156563813	rs6668178	G	A	4091.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr1	156563852	rs942963	C	T	2552.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr1	156563898	rs1270	T	C	1201.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	156564640	rs3795732	G	A	3733.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr1	156564922	rs3795733	C	T	19388.77	.	AC=2;AF=1.00;AN=2;DB;DP=707;set=Intersection	GT:AD:AF:DP	1/1:0,697:1.00:697
chr1	156565049	rs72559129	A	AAC	36285.73	.	AC=2;AF=1.00;AN=2;DB;DP=866;set=Intersection	GT:AD:AF:DP	1/1:0,836:1.00:836
chr1	156566111	rs6666910	T	C	4341.77	.	AC=1;AF=0.500;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	0/1:226,217:0.49:443
chr1	156567496	rs879461	C	T	2269.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr1	156594656	rs12567958	C	A	2249.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr1	156618414	.	C	T	1867.77	.	AC=1;AF=0.500;AN=2;DP=193;set=Intersection	GT:AD:AF:DP	0/1:101,91:0.47:192
chr1	156626340	rs11582013	C	G	911.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:40,42:0.51:82
chr1	156626920	rs7524611	T	C	19935.77	.	AC=2;AF=1.00;AN=2;DB;DP=775;set=Intersection	GT:AD:AF:DP	1/1:0,763:1.00:763
chr1	156639000	rs1046650	A	G	858.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:41,40:0.49:81
chr1	156639097	.	G	C	4740.77	.	AC=1;AF=0.500;AN=2;DP=424;set=Intersection	GT:AD:AF:DP	0/1:198,218:0.52:416
chr1	156639636	rs11549292	G	A	10337.77	.	AC=1;AF=0.500;AN=2;DB;DP=969;set=Intersection	GT:AD:AF:DP	0/1:477,474:0.50:951
chr1	156639753	rs11582300	G	A	31314.77	.	AC=2;AF=1.00;AN=2;DB;DP=1158;set=Intersection	GT:AD:AF:DP	1/1:2,1147:1.00:1149
chr1	156640156	rs3748570	G	A	32852.77	.	AC=2;AF=1.00;AN=2;DB;DP=1221;set=Intersection	GT:AD:AF:DP	1/1:0,1196:1.00:1196
chr1	156640308	rs3748571	C	T	9113.77	.	AC=1;AF=0.500;AN=2;DB;DP=842;set=Intersection	GT:AD:AF:DP	0/1:399,428:0.52:827
chr1	156640503	rs3828043	C	T	7163.77	.	AC=1;AF=0.500;AN=2;DB;DP=681;set=Intersection	GT:AD:AF:DP	0/1:344,332:0.49:676
chr1	156640678	rs2886443	G	A	7121.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	1/1:0,339:1.00:339
chr1	156646668	rs4278369	A	G	7088.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr1	156670545	rs4661213	C	T	1797.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	156704328	.	C	CT	132.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.828;ClippingRankSum=0.000;DP=167;ExcessHet=3.0103;FS=0.884;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.13;ReadPosRankSum=-0.659;SOR=0.812;set=HC	GT:AD:AF:DP	0/1:93,24:0.21:117
chr1	156705593	rs4311877	G	C	14500.77	.	AC=2;AF=1.00;AN=2;DB;DP=535;set=Intersection	GT:AD:AF:DP	1/1:0,531:1.00:531
chr1	156706559	rs8658	A	C,G	2024.77	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=84;set=Intersection	GT:AF:DP	1/2:0.44,0.56:82
chr1	156707775	rs6670122	T	G	4176.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr1	156713512	rs4437869	C	T	5339.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.52;SOR=0.735;set=HC	GT:AD:AF:DP	1/1:0,194:1.00:194
chr1	156713558	rs4399146	G	A	2103.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:101,95:0.48:196
chr1	156752048	rs2274503	C	G	2414.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:128,118:0.48:246
chr1	156752231	rs367770256	AT	A	218.73	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:21,10:0.32:31
chr1	156760887	rs11264554	C	A	3733.77	.	AC=1;AF=0.500;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	0/1:223,181:0.45:404
chr1	156761618	rs2644615	C	T	4258.77	.	AC=1;AF=0.500;AN=2;DB;DP=583;MQ=60.02;set=Intersection	GT:AD:AF:DP	0/1:342,229:0.40:571
chr1	156784982	rs926103	T	C	1332.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:86,65:0.43:151
chr1	156785617	rs1800601	G	A	5534.77	.	AC=1;AF=0.500;AN=2;DB;DP=533;set=Intersection	GT:AD:AF:DP	0/1:265,267:0.50:532
chr1	156785762	rs11325907	AG	A	8173.73	.	AC=1;AF=0.500;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	0/1:212,216:0.50:428
chr1	156785771	rs7546838	A	G	8124.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.882;ClippingRankSum=0.000;DB;DP=395;ExcessHet=3.0103;FS=1.197;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.384;QD=20.83;ReadPosRankSum=0.495;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:190,200:0.51:390
chr1	156785779	rs1800600	G	A	7387.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.373;ClippingRankSum=0.000;DB;DP=388;ExcessHet=3.0103;FS=1.204;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.405;QD=19.24;ReadPosRankSum=1.017;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:190,194:0.51:384
chr1	156815921	rs12064115	C	T	2712.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:147,129:0.47:276
chr1	156816612	rs61813769	G	C	926.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:18,37:0.67:55
chr1	156845492	rs144271100	A	AGTGT,AGTGTGT	4932.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.235;ClippingRankSum=0.000;DB;DP=412;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.03;MQRankSum=0.000;QD=36.81;ReadPosRankSum=-0.760;SOR=0.767;set=HC	GT:AD:AF:DP	1/2:12,65,57:0.49,0.43:134
chr1	156848995	rs6337	C	T	8169.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr1	156874874	rs78436112	TGG	T	1806.73	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:16,52:0.76:68
chr1	156875037	rs6676171	T	G	961.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:42,41:0.49:83
chr1	156875092	rs4661074	G	A	2663.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.334;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.24;ReadPosRankSum=-0.199;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:80,66:0.45:146
chr1	156875097	rs4661075	G	A	2963.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.145;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.64;ReadPosRankSum=-1.168;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:84,75:0.47:159
chr1	156875107	rs2644590	C	A	3200.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.878;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.19;ReadPosRankSum=-2.152;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:89,87:0.49:176
chr1	156875377	rs2644591	G	C	984.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	156875985	rs2644593	G	A	6888.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr1	156877457	rs1952294	T	C	16824.77	.	AC=2;AF=1.00;AN=2;DB;DP=625;set=Intersection	GT:AD:AF:DP	1/1:0,619:1.00:619
chr1	156882261	rs57731889	C	T	7029.77	.	AC=1;AF=0.500;AN=2;DB;DP=591;set=Intersection	GT:AD:AF:DP	0/1:254,325:0.56:579
chr1	156883493	rs11264581	G	A	2168.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:138,102:0.42:240
chr1	156883546	rs12137505	A	G	9550.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:0,362:1.00:362
chr1	156884365	rs749256	T	C	6818.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr1	156894006	rs822438	C	G	1933.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr1	156896870	.	T	TG	3193.73	.	AC=1;AF=0.500;AN=2;DP=271;set=Intersection	GT:AD:AF:DP	0/1:134,132:0.50:266
chr1	156902259	rs822430	G	A	4202.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr1	156907081	rs945508	T	C	4329.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr1	156907115	rs868188	T	C	4604.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr1	156911288	rs75968909	G	A	2337.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:105,110:0.51:215
chr1	156914240	rs5778015	CCATT	C	3720.73	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:2,87:0.98:89
chr1	156926433	rs73008716	C	T	903.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:46,38:0.45:84
chr1	156939175	rs1336149	C	T	732.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:50,37:0.43:87
chr1	156948956	rs3831270	CCCT	C	1849.73	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:43,48:0.53:91
chr1	156949153	.	C	CTT	149.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.487;ClippingRankSum=-0.000;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.24;ReadPosRankSum=-0.748;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:12,12:0.50:24
chr1	156954267	rs6427339	C	T	2270.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:96,110:0.53:206
chr1	156954384	rs6427340	T	C	378.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:8,17:0.68:25
chr1	156956057	rs3737599	T	C	419.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:29,20:0.41:49
chr1	157069154	rs16838075	A	G	2177.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:118,97:0.45:215
chr1	157069261	rs16838078	A	C	3181.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:134,145:0.52:279
chr1	157095470	rs2231856	A	G	9248.77	.	AC=1;AF=0.500;AN=2;DB;DP=945;set=Intersection	GT:AD:AF:DP	0/1:472,457:0.49:929
chr1	157485561	rs3811035	G	A	2863.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.272;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.86;ReadPosRankSum=-0.488;SOR=1.194;set=HC	GT:AD:AF:DP	1/1:1,119:0.99:120
chr1	157485720	rs1002967	T	C	1096.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	157491173	rs6427383	T	A	1051.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:43,48:0.53:91
chr1	157497263	rs3761961	T	C	2867.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:110,119:0.52:229
chr1	157497673	rs376321602	C	T	3644.77	.	AC=1;AF=0.500;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	0/1:175,176:0.50:351
chr1	157508882	rs6427384	C	T	558.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:45,28:0.38:73
chr1	157509025	rs2012199	C	T	4496.77	.	AC=1;AF=0.500;AN=2;DB;DP=515;set=Intersection	GT:AD:AF:DP	0/1:283,229:0.45:512
chr1	157514091	rs12036228	C	T	5365.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.740;ClippingRankSum=0.000;DB;DP=250;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.90;ReadPosRankSum=-0.374;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:108,137:0.56:245
chr1	157514097	rs6679793	A	G	5467.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.696;ClippingRankSum=0.000;DB;DP=257;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.70;ReadPosRankSum=-0.093;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:110,142:0.56:252
chr1	157517127	rs7531685	C	T	1869.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:109,100:0.48:209
chr1	157522016	rs7552348	G	A	397.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:28,18:0.39:46
chr1	157548669	rs1885561	T	A	1813.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr1	157557957	rs11799853	T	C	7934.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:2,280:0.99:282
chr1	157566019	rs10489674	G	A	1388.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	157566211	rs12744410	A	G	5726.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr1	157567751	rs1361889	A	G	10305.77	.	AC=2;AF=1.00;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	1/1:0,391:1.00:391
chr1	157651017	rs1806798	T	C	1467.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	157652929	rs141977401	TA	T	6042.73	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:2,284:0.99:286
chr1	157668390	rs7522061	T	C	2330.77	.	AC=1;AF=0.500;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	0/1:294,139:0.32:433
chr1	157669580	rs58517866	T	A	1677.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:184,96:0.34:280
chr1	157670290	rs945635	C	G	3239.77	.	AC=1;AF=0.500;AN=2;DB;DP=592;set=Intersection	GT:AD:AF:DP	0/1:392,195:0.33:587
chr1	157718231	rs143605468	CAAAT	C	2619.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.576;ClippingRankSum=0.000;DB;DP=260;ExcessHet=3.0103;FS=5.531;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.409;QD=11.96;ReadPosRankSum=-0.939;SOR=1.126;set=HC	GT:AD:AF:DP	0/1:145,74:0.34:219
chr1	157718283	rs6696643	A	T	17090.77	.	AC=2;AF=1.00;AN=2;DB;DP=510;set=Intersection	GT:AD:AF:DP	1/1:0,507:1.00:507
chr1	157718325	rs3818813	T	G	4256.77	.	AC=1;AF=0.500;AN=2;DB;DP=727;set=Intersection	GT:AD:AF:DP	0/1:474,249:0.34:723
chr1	157718430	rs2275232	T	G	2561.77	.	AC=1;AF=0.500;AN=2;DB;DP=474;set=Intersection	GT:AD:AF:DP	0/1:328,142:0.30:470
chr1	157718645	rs2275233	T	C	823.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:89,45:0.34:134
chr1	157718780	rs3818814	A	G	585.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.505;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=1.446;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.47;ReadPosRankSum=0.420;SOR=0.541;set=HC	GT:AD:AF:DP	0/1:129,40:0.24:169
chr1	157718835	rs6662117	G	A	497.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:87,30:0.26:117
chr1	157737504	rs2873413	G	A	323.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:42,16:0.28:58
chr1	157740186	rs10540465	GTC	G	4871.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	0/1:297,139:0.32:436
chr1	157740189	rs57139984	A	G	4874.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.278;ClippingRankSum=0.000;DB;DP=435;ExcessHet=3.0103;FS=0.562;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=-0.972;QD=11.28;ReadPosRankSum=1.684;SOR=0.630;set=HC	GT:AD:AF:DP	0/1:293,139:0.32:432
chr1	157740205	.	C	CTTT	11851.73	.	AC=1;AF=0.500;AN=2;DP=453;MQ=60.01;set=Intersection	GT:AD:AF:DP	0/1:144,294:0.67:438
chr1	157771880	rs4971154	C	T	12039.77	.	AC=1;AF=0.500;AN=2;DB;DP=866;MQ=60.01;set=Intersection	GT:AD:AF:DP	0/1:310,536:0.63:846
chr1	157802877	rs2765500	T	C	758.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:13,28:0.68:41
chr1	157802979	rs2261295	C	T	9681.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	1/1:0,342:1.00:342
chr1	157806006	rs2765503	G	A	15576.77	.	AC=2;AF=1.00;AN=2;DB;DP=574;set=Intersection	GT:AD:AF:DP	1/1:2,565:1.00:567
chr1	157811392	rs2260040	G	A	8070.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr1	158056299	rs7367384	C	G	3786.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;MQ=60.02;set=Intersection	GT:AD:AF:DP	0/1:72,170:0.70:242
chr1	158057420	rs7514301	A	T	4222.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr1	158058109	rs6427419	C	A	16105.77	.	AC=2;AF=1.00;AN=2;DB;DP=607;set=Intersection	GT:AD:AF:DP	1/1:1,586:1.00:587
chr1	158058266	.	CTTTTT	C	748.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.430;ClippingRankSum=0.000;DP=262;ExcessHet=3.0103;FS=3.581;MLEAC=1;MLEAF=0.500;MQ=59.62;MQRankSum=2.174;QD=9.85;ReadPosRankSum=2.528;SOR=1.245;set=HC	GT:AD:AF:DP	0/1:44,32:0.42:76
chr1	158066834	rs6427420	A	G	2235.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:236,126:0.35:362
chr1	158067047	rs874844	A	C	141.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:23,8:0.26:31
chr1	158067060	rs11339854	TG	T	86.73	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:18,6:0.25:24
chr1	158146946	rs3021477	T	C	9231.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:0,333:1.00:333
chr1	158153996	rs426336	T	C	8831.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr1	158224575	rs200343605	CTGTGTG	C	1535.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.933;ClippingRankSum=0.000;DB;DP=695;ExcessHet=3.0103;FS=3.829;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.969;QD=5.71;ReadPosRankSum=6.589;SOR=1.011;set=HC	GT:AD:AF:DP	0/1:169,100:0.37:269
chr1	158226465	.	C	CA	70.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.193;ClippingRankSum=0.000;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.64;ReadPosRankSum=-0.578;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:87,23:0.21:110
chr1	158260878	rs375739413	CT	C	412.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.250;ClippingRankSum=0.000;DB;DP=483;ExcessHet=3.0103;FS=1.567;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=3.262;QD=0.89;ReadPosRankSum=0.046;SOR=0.817;set=HC	GT:AD:AF:DP	0/1:360,104:0.22:464
chr1	158297864	rs11583390	C	A	990.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:29,41:0.59:70
chr1	158325394	rs149163969	A	G	529.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:41,24:0.37:65
chr1	158368356	rs115782542	A	G	1766.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:89,84:0.49:173
chr1	158389208	rs34276698	G	GA	1442.73	.	AC=1;AF=0.500;AN=2;DB;DP=209;MQ=60.05;set=Intersection	GT:AD:AF:DP	0/1:97,83:0.46:180
chr1	158389630	rs57525598	G	C	275.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:13,12:0.48:25
chr1	158389659	rs58605957	T	C	459.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:18,21:0.54:39
chr1	158390252	rs12239443	T	G	5171.77	.	AC=1;AF=0.500;AN=2;DB;DP=466;set=Intersection	GT:AD:AF:DP	0/1:237,227:0.49:464
chr1	158390501	rs34616883	G	A	7491.77	.	AC=1;AF=0.500;AN=2;DB;DP=713;set=Intersection	GT:AD:AF:DP	0/1:351,352:0.50:703
chr1	158435250	rs1002599	C	T	1816.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:105,81:0.44:186
chr1	158435278	rs1573519	G	A	2455.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:138,117:0.46:255
chr1	158436299	rs4657080	T	C	3980.77	.	AC=1;AF=0.500;AN=2;DB;DP=396;MQ=60.05;set=Intersection	GT:AD:AF:DP	0/1:209,185:0.47:394
chr1	158436354	rs67123344	AT	A	862.73	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:65,55:0.46:120
chr1	158450238	rs3820678	G	A	6465.77	.	AC=1;AF=0.500;AN=2;DB;DP=811;set=Intersection	GT:AD:AF:DP	0/1:474,326:0.41:800
chr1	158450314	rs6679056	A	G	6509.77	.	AC=1;AF=0.500;AN=2;DB;DP=672;set=Intersection	GT:AD:AF:DP	0/1:358,307:0.46:665
chr1	158450382	rs1418843	C	T	4831.77	.	AC=1;AF=0.500;AN=2;DB;DP=455;set=Intersection	GT:AD:AF:DP	0/1:235,217:0.48:452
chr1	158507157	rs2051665	A	T	3397.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.424;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=5.275;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.90;ReadPosRankSum=1.906;SOR=1.099;set=HC	GT:AD:AF:DP	0/1:112,89:0.44:201
chr1	158507160	rs2051666	T	G	3417.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.634;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=4.143;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.59;ReadPosRankSum=1.687;SOR=0.978;set=HC	GT:AD:AF:DP	0/1:114,92:0.45:206
chr1	158507184	rs2051068	A	G	2365.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.372;ClippingRankSum=0.000;DB;DP=280;ExcessHet=3.0103;FS=2.677;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.48;ReadPosRankSum=1.821;SOR=0.879;set=HC	GT:AD:AF:DP	0/1:160,119:0.43:279
chr1	158507222	rs5778082	GA	G	2896.73	.	AC=1;AF=0.500;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	0/1:216,181:0.46:397
chr1	158507398	rs2051067	G	T	1500.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:69,67:0.49:136
chr1	158532405	rs7526514	T	G	445.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:6,17:0.74:23
chr1	158533140	rs12080815	A	G	3707.77	.	AC=1;AF=0.500;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	0/1:207,178:0.46:385
chr1	158533224	rs12081915	A	G	4567.77	.	AC=1;AF=0.500;AN=2;DB;DP=455;set=Intersection	GT:AD:AF:DP	0/1:239,215:0.47:454
chr1	158549264	rs863360	G	A	2244.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:123,107:0.47:230
chr1	158549420	rs863361	C	T	2957.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:120,137:0.53:257
chr1	158549492	rs863362	C	T	3088.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:148,133:0.47:281
chr1	158549511	rs863363	A	G	3220.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:163,150:0.48:313
chr1	158565115	rs1332688	G	T	172.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:11,8:0.42:19
chr1	158577167	rs2427808	A	T	2485.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:128,118:0.48:246
chr1	158580887	rs3768535	T	C	321.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:15,15:0.50:30
chr1	158580921	rs66981873	GCA	G,GCACACACACACA	1530.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.945;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=2.636;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.29;MQRankSum=0.483;QD=23.55;ReadPosRankSum=2.162;SOR=0.257;set=HC	GT:AD:AF:DP	1/2:3,34,28:0.52,0.43:65
chr1	158582426	rs2518489	G	A	301.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:16,13:0.45:29
chr1	158582543	rs2251963	G	A	3503.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.754;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=0.547;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.15;ReadPosRankSum=1.755;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:101,92:0.48:193
chr1	158582552	rs2251964	G	A	3825.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.431;ClippingRankSum=0.000;DB;DP=217;ExcessHet=3.0103;FS=1.728;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.96;ReadPosRankSum=0.588;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:107,106:0.50:213
chr1	158582646	rs2251969	T	C	8716.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	1/1:0,332:1.00:332
chr1	158582838	rs2157691	G	C	538.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:18,22:0.55:40
chr1	158584091	rs952094	A	G	4758.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.19;QD=41.74;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,114:1.00:114
chr1	158584103	rs373704896	G	GA,GAA	2197.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.213;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.18;MQRankSum=0.407;QD=20.73;ReadPosRankSum=1.028;SOR=0.693;set=HC	GT:AD:AF:DP	1/2:6,39,61:0.37,0.58:106
chr1	158585230	rs2518491	C	T	1082.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:65,51:0.44:116
chr1	158585355	rs2852634	T	C	119.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:13,6:0.32:19
chr1	158587390	rs857716	C	T	10118.77	.	AC=2;AF=1.00;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	1/1:2,381:0.99:383
chr1	158587784	rs857717	T	G	2762.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr1	158587858	rs28525570	G	A	1763.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:102,90:0.47:192
chr1	158588916	rs7553252	C	G	1217.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:27,47:0.64:74
chr1	158592935	rs3753068	G	A	3548.77	.	AC=1;AF=0.500;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	0/1:203,172:0.46:375
chr1	158595824	rs56954229	T	C	1316.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:54,56:0.51:110
chr1	158595842	rs11265038	C	A	1774.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:74,78:0.51:152
chr1	158596524	rs12088990	A	G	816.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:56,35:0.38:91
chr1	158597507	rs3737515	G	C	5276.77	.	AC=1;AF=0.500;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	0/1:232,238:0.51:470
chr1	158606449	rs3738791	G	T	2349.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:95,110:0.54:205
chr1	158606687	rs192115633	T	G	320.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:11,13:0.54:24
chr1	158607788	rs2518492	T	G	4409.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr1	158607935	rs857725	T	G	3543.77	.	AC=1;AF=0.500;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	0/1:211,172:0.45:383
chr1	158609300	rs17635857	C	G	660.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:35,34:0.49:69
chr1	158612236	rs863931	A	G	10864.77	.	AC=2;AF=1.00;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	1/1:0,419:1.00:419
chr1	158612548	rs857721	T	A	2501.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:100,115:0.53:215
chr1	158612719	rs41273523	C	T	3356.77	.	AC=1;AF=0.500;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	0/1:202,159:0.44:361
chr1	158614198	rs6702040	C	T	2566.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:128,119:0.48:247
chr1	158618223	rs857677	C	T	698.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:29,32:0.52:61
chr1	158619728	rs2482965	A	C	8310.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:1,305:1.00:306
chr1	158637865	rs140998442	GAAA	G,GAAAA	2420.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.800;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=1.471;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.12;MQRankSum=0.466;QD=19.06;ReadPosRankSum=-0.097;SOR=0.495;set=HC	GT:AD:AF:DP	1/2:20,83,24:0.65,0.19:127
chr1	158639601	rs2298801	A	G	2104.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.709;ClippingRankSum=0.000;DB;DP=221;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.79;ReadPosRankSum=0.039;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:115,100:0.47:215
chr1	158644105	rs703116	T	A	4491.77	.	AC=1;AF=0.500;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	0/1:202,205:0.50:407
chr1	158647495	rs325996	A	T	11293.77	.	AC=2;AF=1.00;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	1/1:0,416:1.00:416
chr1	158647522	rs703121	A	G	4973.77	.	AC=1;AF=0.500;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	0/1:172,223:0.56:395
chr1	158647631	rs325995	T	A	3677.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr1	158647669	rs703122	T	C	847.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:39,35:0.47:74
chr1	158654786	rs385096	C	T	1482.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	158654852	rs857937	A	G	1824.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:79,73:0.48:152
chr1	158655036	rs435080	G	A	12247.77	.	AC=2;AF=1.00;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	1/1:0,447:1.00:447
chr1	158655162	rs2564859	C	A	5920.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr1	158656281	rs2564858	T	C	1913.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.14;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr1	158656347	rs111674514	C	CAG,CAGAG	2897.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.335;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=38.13;ReadPosRankSum=-0.547;SOR=0.307;set=HC	GT:AD:AF:DP	1/2:1,15,60:0.20,0.79:76
chr1	158656432	rs367824971	G	GA	136.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.675;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=1.450;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.14;ReadPosRankSum=-1.779;SOR=0.409;set=HC	GT:AD:AF:DP	0/1:21,12:0.36:33
chr1	158687163	rs28568406	G	A	6681.77	.	AC=1;AF=0.500;AN=2;DB;DP=570;set=Intersection	GT:AD:AF:DP	0/1:267,296:0.53:563
chr1	158687224	rs857703	G	A	6321.77	.	AC=1;AF=0.500;AN=2;DB;DP=578;set=Intersection	GT:AD:AF:DP	0/1:287,286:0.50:573
chr1	158725080	rs16841001	C	T	4277.77	.	AC=1;AF=0.500;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	0/1:164,187:0.53:351
chr1	158735595	rs857824	C	T	2815.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:196,140:0.42:336
chr1	158735691	rs857825	T	C	3573.77	.	AC=1;AF=0.500;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	0/1:248,181:0.42:429
chr1	158735740	rs857826	A	G	3485.77	.	AC=1;AF=0.500;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	0/1:212,166:0.44:378
chr1	158735892	rs857827	A	G	4125.77	.	AC=1;AF=0.500;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	0/1:214,196:0.48:410
chr1	158736215	rs6666753	G	A	6205.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr1	158747492	rs857835	A	G	555.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:19,26:0.58:45
chr1	158813819	rs857870	A	G	5296.77	.	AC=1;AF=0.500;AN=2;DB;DP=583;set=Intersection	GT:AD:AF:DP	0/1:304,269:0.47:573
chr1	158909164	rs2325704	C	A	5989.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr1	158913525	rs856082	A	G	2704.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr1	158943295	rs71084295	T	TCACA	594.73	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:38,21:0.36:59
chr1	158943328	rs12145823	T	C	1400.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:72,51:0.41:123
chr1	158943382	rs12071136	C	A	3693.77	.	AC=1;AF=0.500;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	0/1:174,171:0.50:345
chr1	158946629	rs145608153	A	AATATATGTAT	934.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.46;QD=42.49;SOR=1.931;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	158946658	rs145640162	CTATATATATATATATATATATATATATA	C	290.87	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=6.532;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=32.32;ReadPosRankSum=0.140;SOR=2.788;set=HC	GT:AD:AF:DP	0/1:1,8:0.89:9
chr1	158986477	rs866484	G	C	6208.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.834;ClippingRankSum=0.000;DB;DP=639;ExcessHet=3.0103;FS=1.742;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.87;ReadPosRankSum=-0.569;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:329,300:0.48:629
chr1	158987941	rs856046	A	G	1771.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:94,78:0.45:172
chr1	158990247	rs1057024	A	G	2440.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:112,117:0.51:229
chr1	159002222	rs861318	A	G	583.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:40,25:0.38:65
chr1	159002301	rs2518553	T	C	3744.77	.	AC=1;AF=0.500;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	0/1:177,189:0.52:366
chr1	159002377	rs1057027	C	A	11440.77	.	AC=1;AF=0.500;AN=2;DB;DP=599;set=Intersection	GT:AD:AF:DP	0/1:284,311:0.52:595
chr1	159002389	rs1057028	T	A	11125.77	.	AC=1;AF=0.500;AN=2;DB;DP=552;set=Intersection	GT:AD:AF:DP	0/1:262,287:0.52:549
chr1	159021364	rs75801539	G	A	1433.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:44,58:0.57:102
chr1	159021445	rs3737522	A	G	4358.77	.	AC=1;AF=0.500;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	0/1:151,188:0.55:339
chr1	159024424	rs7532207	A	T	153.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr1	159024668	rs6940	A	T	1279.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:61,64:0.51:125
chr1	159166009	rs142783373	A	C	759.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:40,35:0.47:75
chr1	159169641	rs862999	T	C	6803.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr1	159174824	rs863001	G	C	28422.77	.	AC=2;AF=1.00;AN=2;DB;DP=1071;set=Intersection	GT:AD:AF:DP	1/1:0,1062:1.00:1062
chr1	159174885	rs7550207	T	C	19921.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.806;ClippingRankSum=0.000;DB;DP=780;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.04;MQRankSum=0.103;QD=25.71;ReadPosRankSum=-0.810;SOR=1.477;set=HC	GT:AD:AF:DP	1/1:2,773:1.00:775
chr1	159175004	rs17838198	CT	C	2729.73	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr1	159175193	rs3027016	A	G	4947.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr1	159175354	rs12075	G	A	21704.77	.	AC=2;AF=1.00;AN=2;DB;DP=803;set=Intersection	GT:AD:AF:DP	1/1:3,794:1.00:797
chr1	159272060	rs2251746	T	C	4312.77	.	AC=1;AF=0.500;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	0/1:236,206:0.47:442
chr1	159320979	rs10908710	G	A	21670.77	.	AC=2;AF=1.00;AN=2;DB;DP=843;set=Intersection	GT:AD:AF:DP	1/1:1,827:1.00:828
chr1	159402584	rs11419544	G	GT	6222.73	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr1	159409196	rs6691297	T	C	7821.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr1	159409533	rs10908721	G	A	7397.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr1	159409734	rs10908722	G	T	25621.77	.	AC=2;AF=1.00;AN=2;DB;DP=959;set=Intersection	GT:AD:AF:DP	1/1:0,946:1.00:946
chr1	159409857	rs12048482	A	G	17872.77	.	AC=2;AF=1.00;AN=2;DB;DP=652;set=Intersection	GT:AD:AF:DP	1/1:0,640:1.00:640
chr1	159505101	rs35393723	G	A	4340.77	.	AC=1;AF=0.500;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	0/1:186,195:0.51:381
chr1	159505297	rs4656837	C	T	5997.77	.	AC=1;AF=0.500;AN=2;DB;DP=581;set=Intersection	GT:AD:AF:DP	0/1:294,283:0.49:577
chr1	159505397	rs140507366	A	G	7015.77	.	AC=1;AF=0.500;AN=2;DB;DP=655;set=Intersection	GT:AD:AF:DP	0/1:326,322:0.50:648
chr1	159558258	rs2808661	A	G	7281.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr1	159684047	.	CCACACACACA	C,CCA	1527.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=36.37;SOR=3.086;set=HC	GT:AD:AF:DP	1/2:0,18,24:0.43,0.57:42
chr1	159684121	.	CT	C	471	.	AC=1;AF=0.500;AN=2;BRF=0.43;FR=0.5000;HP=17;HapScore=1;MGOF=91;MMLQ=15;MQ=59.25;NF=10;NR=34;PP=471;QD=10.7727272727;SC=TTCATACAGTCTTTTTTTTTT;SbPval=0.78;Source=Platypus;TC=70;TCF=20;TCR=50;TR=44;WE=159684130;WS=159684111;set=Platypus	GT:AD:AF:DP	1/0:26,44:0.63:70
chr1	159684186	rs1417938	T	A	1104.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:69,53:0.43:122
chr1	159752046	rs11544443	A	T	10260.77	.	AC=1;AF=0.500;AN=2;DB;DP=998;set=Intersection	GT:AD:AF:DP	0/1:495,500:0.50:995
chr1	159799599	rs11422063	C	CA	2807.73	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:115,120:0.51:235
chr1	159824967	rs2501340	G	C	17307.77	.	AC=2;AF=1.00;AN=2;DB;DP=633;set=Intersection	GT:AD:AF:DP	1/1:0,624:1.00:624
chr1	159825916	rs11587021	C	T	6500.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr1	159826523	rs145833568	G	A	2628.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:132,112:0.46:244
chr1	159826561	.	CCA	C	153.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.321;ClippingRankSum=0.000;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.67;ReadPosRankSum=-1.089;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:79,13:0.14:92
chr1	159827456	rs2494503	A	G	1535.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr1	159828128	rs2494504	A	G	3792.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr1	159828746	rs2501337	G	A	1676.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr1	159832425	rs2494507	G	A	4473.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr1	159842088	rs2494518	T	A	927.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	159842103	rs11265289	C	T	1165.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr1	159842691	rs4460634	C	G	5094.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr1	159854392	rs2501325	C	A	2640.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr1	159860259	rs2501320	G	A	1674.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:72,79:0.52:151
chr1	159889686	rs2252815	G	A	2434.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:124,118:0.49:242
chr1	159897126	rs13052	C	T	828.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:27,37:0.58:64
chr1	159897327	rs2153208	C	T	3425.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:151,166:0.52:317
chr1	159897681	rs142211405	TAA	T,TA	3954.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.351;ClippingRankSum=0.000;DB;DP=265;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.08;MQRankSum=0.434;QD=17.27;ReadPosRankSum=-1.368;SOR=0.808;set=HC	GT:AD:AF:DP	1/2:16,128,85:0.56,0.37:229
chr1	159898913	rs7543462	A	G	1351.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:61,56:0.48:117
chr1	159902526	rs3827531	T	C	1183.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:63,59:0.48:122
chr1	159904202	rs41264839	G	A	2294.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:100,102:0.50:202
chr1	159906849	rs10797055	A	G	595.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:14,23:0.62:37
chr1	159913053	rs41264841	C	T	6380.77	.	AC=1;AF=0.500;AN=2;DB;DP=592;set=Intersection	GT:AD:AF:DP	0/1:283,298:0.51:581
chr1	159922369	rs2840583	C	T	5013.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr1	159922458	rs1317520	A	G	449.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:11,16:0.59:27
chr1	159923111	rs2789417	T	G	6620.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr1	160000435	rs12409352	A	T	6007.77	.	AC=1;AF=0.500;AN=2;DB;DP=714;set=Intersection	GT:AD:AF:DP	0/1:419,288:0.41:707
chr1	160057522	rs3001040	C	T	125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.775;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.72;ReadPosRankSum=-0.081;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:13,9:0.41:22
chr1	160061934	rs12408242	T	C	493.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:15,19:0.56:34
chr1	160061959	rs12401728	C	T	373.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.471;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=1.463;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.84;ReadPosRankSum=-1.316;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:19,19:0.50:38
chr1	160062340	rs41265757	G	A	4959.77	.	AC=1;AF=0.500;AN=2;DB;DP=482;set=Intersection	GT:AD:AF:DP	0/1:240,238:0.50:478
chr1	160062472	rs2295622	C	T	5159.77	.	AC=1;AF=0.500;AN=2;DB;DP=527;set=Intersection	GT:AD:AF:DP	0/1:265,249:0.48:514
chr1	160062727	rs2295621	A	G	3132.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:166,152:0.48:318
chr1	160064592	rs12044027	T	C	1038.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:39,42:0.52:81
chr1	160068068	rs12046504	A	C	1299.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:1,45:0.98:46
chr1	160083353	.	A	T	1500.77	.	AC=1;AF=0.500;AN=2;DP=174;set=Intersection	GT:AD:AF:DP	0/1:95,77:0.45:172
chr1	160090674	rs2854246	T	C	5909.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr1	160090681	rs67915591	CCCTT	C	10149.73	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr1	160091136	rs17846705	T	C	1333.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:54,57:0.51:111
chr1	160093222	rs2820581	C	T	15133.77	.	AC=2;AF=1.00;AN=2;DB;DP=549;set=Intersection	GT:AD:AF:DP	1/1:0,545:1.00:545
chr1	160093911	rs2820582	T	C	2618.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr1	160095127	rs7548116	T	A	4498.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr1	160097666	rs6695366	G	A	6159.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:2,220:0.99:222
chr1	160098927	rs5778151	A	AG	2434.73	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr1	160105367	rs17846715	C	T	1711.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.648;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=5.210;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.34;ReadPosRankSum=-0.023;SOR=0.390;set=HC	GT:AD:AF:DP	0/1:70,81:0.54:151
chr1	160109408	rs56077630	A	AC	5866.73	.	AC=1;AF=0.500;AN=2;DB;DP=488;MQ=60.02;set=Intersection	GT:AD:AF:DP	0/1:262,206:0.44:468
chr1	160109636	rs17846717	C	G	6451.77	.	AC=1;AF=0.500;AN=2;DB;DP=640;set=Intersection	GT:AD:AF:DP	0/1:336,296:0.47:632
chr1	160109656	rs17846718	G	C	6691.77	.	AC=1;AF=0.500;AN=2;DB;DP=673;set=Intersection	GT:AD:AF:DP	0/1:347,315:0.48:662
chr1	160109788	rs41288127	C	T	3091.77	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:177,148:0.46:325
chr1	160109835	rs55884181	G	A	1635.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:76,71:0.48:147
chr1	160121899	rs77332724	A	G	2584.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.004;ClippingRankSum=0.000;DB;DP=275;ExcessHet=3.0103;FS=0.437;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.40;ReadPosRankSum=0.431;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:145,130:0.47:275
chr1	160124875	rs6427504	G	A	6074.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr1	160125802	rs41288131	C	T	2328.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:177,117:0.40:294
chr1	160128671	rs4656888	G	A	366.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:18,17:0.49:35
chr1	160128994	rs10908764	C	T	347.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:31,17:0.35:48
chr1	160134056	rs17368402	G	A	5643.77	.	AC=1;AF=0.500;AN=2;DB;DP=602;set=Intersection	GT:AD:AF:DP	0/1:321,276:0.46:597
chr1	160134205	rs11265338	C	T	1569.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:77,69:0.47:146
chr1	160136350	rs7529215	G	A	11034.77	.	AC=2;AF=1.00;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	1/1:3,404:0.99:407
chr1	160140998	rs1209804	G	A	678.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:46,29:0.39:75
chr1	160141196	rs625549	C	T	14415.77	.	AC=2;AF=1.00;AN=2;DB;DP=551;set=Intersection	GT:AD:AF:DP	1/1:0,540:1.00:540
chr1	160141636	rs1891265	C	T	4037.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr1	160145707	rs11805919	C	T	485.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:28,22:0.44:50
chr1	160146173	rs881291	T	C	3458.77	.	AC=1;AF=0.500;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:162,157:0.49:319
chr1	160147502	rs731852	T	G	5835.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr1	160147517	rs11801984	A	G	2482.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.859;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.86;ReadPosRankSum=-0.168;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:71,68:0.49:139
chr1	160147521	rs11806793	C	T	2432.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.492;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=2.398;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.71;ReadPosRankSum=0.814;SOR=0.949;set=HC	GT:AD:AF:DP	0/1:69,61:0.47:130
chr1	160151345	rs113684338	CA	C	178.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.292;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.19;ReadPosRankSum=-0.948;SOR=1.042;set=HC	GT:AD:AF:DP	0/1:30,26:0.46:56
chr1	160151450	rs7519748	T	C	8688.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:2,305:0.99:307
chr1	160151624	rs36097870	G	GC	17050.73	.	AC=1;AF=0.500;AN=2;DB;DP=1641;set=Intersection	GT:AD:AF:DP	0/1:800,809:0.50:1609
chr1	160163446	rs3747621	C	T	2109.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.57;SOR=3.830;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr1	160163446	.	CGGG	TGGC,TGGG	729	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.26;FR=0.5000,0.5000;HP=3;HapScore=2;MGOF=7;MMLQ=28;MQ=60.0;NF=29,42;NR=3,3;PP=729,271;QD=24.4521210894;SC=GATTATCAAACGGGCTGTGGC;SbPval=0.51;Source=Platypus;TC=47;TCF=43;TCR=4;TR=32,45;WE=160163457;WS=160163436;set=Platypus	GT:AF:DP	0/1:0.68:47
chr1	160163449	rs3747622	G	C	1024.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.081;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.63;ReadPosRankSum=0.713;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:18,37:0.67:55
chr1	160163509	rs3747623	C	T	1202.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:72,54:0.43:126
chr1	160164668	rs1186693	T	C	1126.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	160165449	.	C	CA	2333.73	.	AC=1;AF=0.500;AN=2;DP=118;set=Intersection	GT:AD:AF:DP	0/1:40,72:0.64:112
chr1	160165572	rs60043899	T	A	2820.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:91,122:0.57:213
chr1	160168368	rs822450	G	A	1881.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:127,93:0.42:220
chr1	160169473	rs959166	T	C	1562.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr1	160178356	rs667306	A	G	4464.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr1	160209873	rs199748027	GCTCTTCTTCCTC	G	3587.73	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:146,100:0.41:246
chr1	160232929	rs61480108	AT	A	146.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.336;ClippingRankSum=0.000;DB;DP=252;ExcessHet=3.0103;FS=0.711;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.60;ReadPosRankSum=1.536;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:190,55:0.22:245
chr1	160233265	rs11455653	C	CA	172.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.201;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=3.891;MLEAC=1;MLEAF=0.500;MQ=60.37;MQRankSum=0.054;QD=4.67;ReadPosRankSum=-0.635;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:20,17:0.46:37
chr1	160233345	rs6688586	C	A	241.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:8,11:0.58:19
chr1	160246989	rs71846573	C	CT	225.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.883;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.588;QD=2.38;ReadPosRankSum=-0.300;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:70,25:0.26:95
chr1	160247185	rs10594	G	C	2897.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:152,147:0.49:299
chr1	160251792	rs2795067	A	G	3843.77	.	AC=1;AF=0.500;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:138,175:0.56:313
chr1	160260233	rs2298104	T	C	2464.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.886;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=1.308;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.80;ReadPosRankSum=0.284;SOR=0.844;set=HC	GT:AD:AF:DP	0/1:59,97:0.62:156
chr1	160263124	rs1317944	C	T	4707.77	.	AC=1;AF=0.500;AN=2;DB;DP=529;set=Intersection	GT:AD:AF:DP	0/1:285,229:0.45:514
chr1	160265515	rs3789042	T	C	1273.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:46,55:0.54:101
chr1	160275434	rs2066320	A	G	5426.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.34;SOR=0.739;set=HC	GT:AD:AF:DP	1/1:0,223:1.00:223
chr1	160302444	rs4656897	G	A	168.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:12,8:0.40:20
chr1	160303416	rs1802778	G	A	6694.77	.	AC=1;AF=0.500;AN=2;DB;DP=654;set=Intersection	GT:AD:AF:DP	0/1:313,332:0.51:645
chr1	160309664	rs1886419	T	G	2811.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:143,131:0.48:274
chr1	160313733	rs1886417	C	A	1724.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.213;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=0.653;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=-0.953;QD=10.27;ReadPosRankSum=-1.151;SOR=0.783;set=HC	GT:AD:AF:DP	0/1:87,81:0.48:168
chr1	160313744	rs35301624	GT	G	142.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.244;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.292;QD=2.38;ReadPosRankSum=-0.568;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:34,26:0.43:60
chr1	160314588	.	C	G	4507.77	.	AC=1;AF=0.500;AN=2;DP=427;set=Intersection	GT:AD:AF:DP	0/1:211,214:0.50:425
chr1	160319055	rs12239946	T	C	558.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:36,26:0.42:62
chr1	160321180	rs2274185	C	G	2307.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:100,105:0.51:205
chr1	160393905	rs12086448	A	G	7208.77	.	AC=1;AF=0.500;AN=2;DB;DP=629;set=Intersection	GT:AD:AF:DP	0/1:294,324:0.52:618
chr1	160456712	rs3795329	G	C	314.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:17,14:0.45:31
chr1	160458782	rs3795327	A	G	4073.77	.	AC=1;AF=0.500;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	0/1:240,208:0.46:448
chr1	160459909	rs12119876	C	A	1612.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:79,79:0.50:158
chr1	160460099	rs11265413	T	A	549.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:20,25:0.56:45
chr1	160466356	rs3795326	A	G	502.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:19,20:0.51:39
chr1	160519812	rs3832278	C	CA	3405.73	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:76,88:0.54:164
chr1	160519815	rs58960001	C	CT	3405.73	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:74,87:0.54:161
chr1	160580015	rs1061217	A	G	2220.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:134,116:0.46:250
chr1	160582200	rs200238058	T	TA	148.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.184;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=2.014;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.39;ReadPosRankSum=-0.153;SOR=0.951;set=HC	GT:AD:AF:DP	0/1:83,24:0.22:107
chr1	160582213	rs2025515	C	A	751.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.793;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=3.386;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.57;ReadPosRankSum=-0.770;SOR=0.435;set=HC	GT:AD:AF:DP	0/1:87,48:0.36:135
chr1	160582248	rs11265449	C	G	1342.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:114,72:0.39:186
chr1	160585554	rs149160	C	G	14186.77	.	AC=2;AF=1.00;AN=2;DB;DP=527;set=Intersection	GT:AD:AF:DP	1/1:0,523:1.00:523
chr1	160585706	rs151607	C	T	2094.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:83,88:0.51:171
chr1	160648875	rs150535390	C	T	3172.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:161,152:0.49:313
chr1	160650913	rs4656926	A	G	2072.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr1	160654758	rs2295615	C	G	5103.77	.	AC=1;AF=0.500;AN=2;DB;DP=519;set=Intersection	GT:AD:AF:DP	0/1:269,242:0.47:511
chr1	160654786	rs1980606	G	A	4644.77	.	AC=1;AF=0.500;AN=2;DB;DP=488;set=Intersection	GT:AD:AF:DP	0/1:260,221:0.46:481
chr1	160717872	rs527733	T	G	802.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	160722064	rs527342	A	G	1223.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	160766179	rs3831924	C	CT	158.73	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:19,12:0.39:31
chr1	160784458	.	C	G	604.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.856;ClippingRankSum=0.000;DP=627;ExcessHet=3.0103;FS=0.764;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.98;ReadPosRankSum=0.262;SOR=0.786;set=HC	GT:AD:AF:DP	0/1:527,89:0.14:616
chr1	160786670	rs560681	A	G	1536.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:54,66:0.55:120
chr1	160789196	rs537540	A	C	7114.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:1,248:1.00:249
chr1	160793442	rs474131	A	G	5869.77	.	AC=1;AF=0.500;AN=2;DB;DP=599;set=Intersection	GT:AD:AF:DP	0/1:308,279:0.48:587
chr1	160793560	rs509749	A	G	3758.77	.	AC=1;AF=0.500;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	0/1:201,180:0.47:381
chr1	160793962	rs506081	G	C	1142.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:88,56:0.39:144
chr1	160797323	rs577453	T	G	547.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:35,23:0.40:58
chr1	160797514	rs576334	C	G	3870.77	.	AC=1;AF=0.500;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	0/1:237,191:0.45:428
chr1	160797684	rs574610	A	G	773.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:50,36:0.42:86
chr1	160801046	rs480104	C	G	576.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:22,24:0.52:46
chr1	160832212	rs11265500	A	G	1095.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:37,42:0.53:79
chr1	160832470	.	C	T	2477.77	.	AC=1;AF=0.500;AN=2;DP=234;set=Intersection	GT:AD:AF:DP	0/1:113,118:0.51:231
chr1	160849030	rs3766358	T	A	758.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:47,33:0.41:80
chr1	160849060	rs3766359	G	A	1456.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:70,59:0.46:129
chr1	160849082	rs3820094	A	G	1764.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:105,86:0.45:191
chr1	160849367	rs2274905	G	T	648.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:20,24:0.55:44
chr1	160850280	rs4656957	G	A	1387.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:39,59:0.60:98
chr1	160850936	rs2236515	T	C	13433.77	.	AC=1;AF=0.500;AN=2;DB;DP=1219;MQ=59.98;set=Intersection	GT:AD:AF:DP	0/1:575,637:0.53:1212
chr1	160851594	rs56380748	GAAAAAAA	G	996.73	.	AC=1;AF=0.500;AN=2;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=11.303;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=0.416;QD=35.60;SOR=2.209;set=HC	GT:AD:AF:DP	0/1:2,26:0.93:28
chr1	160851619	rs10908808	A	G	1686.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:10,52:0.84:62
chr1	160851826	rs2274907	A	T	3546.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:147,161:0.52:308
chr1	160851894	rs2274908	G	A	3420.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:127,156:0.55:283
chr1	160852022	rs2274909	C	T	4741.77	.	AC=1;AF=0.500;AN=2;DB;DP=460;set=Intersection	GT:AD:AF:DP	0/1:223,228:0.51:451
chr1	160852046	rs2274910	T	C	3732.77	.	AC=1;AF=0.500;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	0/1:175,177:0.50:352
chr1	160854526	rs2297559	G	A	727.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:24,29:0.55:53
chr1	160920813	rs790059	A	G	14883.77	.	AC=2;AF=1.00;AN=2;DB;DP=556;set=Intersection	GT:AD:AF:DP	1/1:0,552:1.00:552
chr1	160969008	rs3831190	T	TG	4744.73	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr1	160969585	rs790056	C	T	17499.77	.	AC=2;AF=1.00;AN=2;DB;DP=658;set=Intersection	GT:AD:AF:DP	1/1:3,646:1.00:649
chr1	160971146	rs790055	A	G	4500.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr1	160990875	rs28365980	TC	CA	35164.77	.	AC=2;AF=1.00;AN=2;DB;DP=795;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.85;SOR=1.103;set=HC	GT:AD:AF:DP	1/1:0,784:1.00:784
chr1	160990878	rs28365978	C	T	35059.77	.	AC=2;AF=1.00;AN=2;DB;DP=783;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.36;SOR=1.106;set=HC	GT:AD:AF:DP	1/1:0,773:1.00:773
chr1	161010774	rs2516841	A	G	1505.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr1	161010791	rs2073657	C	T	1427.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	161011716	rs2774276	G	C	3822.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr1	161011736	rs144100508	GGA	G	308.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.075;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=3.876;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.921;QD=4.12;ReadPosRankSum=-0.289;SOR=0.781;set=HC	GT:AD:AF:DP	0/1:57,18:0.24:75
chr1	161013121	rs2516839	C	T	7011.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:2,252:0.99:254
chr1	161017556	rs2774279	C	T	13613.77	.	AC=2;AF=1.00;AN=2;DB;DP=509;set=Intersection	GT:AD:AF:DP	1/1:0,504:1.00:504
chr1	161019040	rs3813609	G	C	21124.77	.	AC=2;AF=1.00;AN=2;DB;DP=803;MQ=60.01;set=Intersection	GT:AD:AF:DP	1/1:2,785:1.00:787
chr1	161022380	rs4396136	G	A	8943.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr1	161022639	rs3813610	C	G	196.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	161043735	rs4656285	A	C	2184.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr1	161043764	rs4656978	G	A	1670.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr1	161047125	rs60601836	CTATA	C	1841.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr1	161049358	rs3820097	G	A	15331.77	.	AC=2;AF=1.00;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	1/1:0,445:1.00:445
chr1	161049383	rs77444104	G	T	5107.77	.	AC=1;AF=0.500;AN=2;DB;DP=526;set=Intersection	GT:AD:AF:DP	0/1:270,249:0.48:519
chr1	161069544	rs1128750	G	A	4321.77	.	AC=1;AF=0.500;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	0/1:221,200:0.48:421
chr1	161132777	rs17356051	G	A	2376.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:135,118:0.47:253
chr1	161162173	rs7512012	G	A	1283.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	161163037	rs4233367	T	C	3619.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr1	161163633	rs3813622	C	T	15577.77	.	AC=2;AF=1.00;AN=2;DB;DP=591;set=Intersection	GT:AD:AF:DP	1/1:0,586:1.00:586
chr1	161167698	rs4589131	T	G	2686.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr1	161168004	rs33941127	C	T	17407.77	.	AC=2;AF=1.00;AN=2;DB;DP=652;set=Intersection	GT:AD:AF:DP	1/1:0,636:1.00:636
chr1	161176137	rs4656993	A	G	4936.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr1	161184059	rs10629771	C	CTG	1124.73	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:20,50:0.71:70
chr1	161184097	rs1136224	A	G	893.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:31,36:0.54:67
chr1	161185058	rs2070901	G	T	4710.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr1	161187665	rs2070902	C	T	2900.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr1	161192819	.	GC	G	2948	.	AC=1;AF=0.500;AN=2;BRF=0.45;FR=0.5000;HP=3;HapScore=1;MGOF=36;MMLQ=24;MQ=60.0;NF=39;NR=149;PP=2948;QD=20;SC=TGGCTCCTTTGCCTGTCTCCG;SbPval=0.36;Source=Platypus;TC=352;TCF=67;TCR=285;TR=188;WE=161192827;WS=161192809;set=Platypus	GT:AD:AF:DP	0/1:164,188:0.53:352
chr1	161192845	rs72161246	CCACACACA	C,CCA	11430.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=500;set=Intersection	GT:AF:DP	1/2:0.25,0.73:312
chr1	161192879	.	ACACACT	A	2997	.	AC=1;AF=0.500;AN=2;BRF=0.36;FR=0.5000;HP=2;HapScore=1;MGOF=29;MMLQ=26;MQ=60.02;NF=24;NR=161;PP=2997;QD=20;SC=ACACACACACACACACTCTTT;SbPval=0.79;Source=Platypus;TC=228;TCF=37;TCR=191;TR=185;WE=161192892;WS=161192869;set=Platypus	GT:AD:AF:DP	0/1:43,185:0.81:228
chr1	161196166	rs3813628	A	C	675.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.067;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.38;ReadPosRankSum=0.632;SOR=1.038;set=HC	GT:AD:AF:DP	0/1:20,27:0.57:47
chr1	161197244	rs4233368	C	A	375.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:22,16:0.42:38
chr1	161198413	rs116664724	C	A	876.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:25,33:0.57:58
chr1	161200487	rs4073054	C	A	2188.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr1	161201350	rs11265567	G	T	712.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.752;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.76;ReadPosRankSum=0.439;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:19,19:0.50:38
chr1	161201350	.	GCG	TCA	545	.	AC=1;AF=0.500;AN=2;BRF=0.25;FR=0.5000;HP=1;HapScore=2;MGOF=7;MMLQ=28;MQ=60.0;NF=5;NR=10;PP=545;QD=39.8978583241;SC=GAGTGCAGTGGCGTGATCTCT;SbPval=0.49;Source=Platypus;TC=33;TCF=10;TCR=23;TR=15;WE=161201360;WS=161201340;set=Platypus	GT:AD:AF:DP	0/1:18,15:0.45:33
chr1	161201352	rs11265568	G	A	712.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.425;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.80;ReadPosRankSum=0.032;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:17,19:0.53:36
chr1	161202605	rs2307424	G	A	2967.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:93,134:0.59:227
chr1	161204906	rs3123553	G	A	468.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.67;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	161205898	rs6686001	G	T	782.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:34,35:0.51:69
chr1	161208254	.	AAG	A	62.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.638;ClippingRankSum=0.000;DP=140;ExcessHet=3.0103;FS=1.021;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.46;ReadPosRankSum=0.444;SOR=0.865;set=HC	GT:AD:AF:DP	0/1:120,16:0.12:136
chr1	161209164	rs79769623	G	A	131.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:15,8:0.35:23
chr1	161228800	rs4078110	C	T	869.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:54,38:0.41:92
chr1	161228843	rs16832733	G	A	603.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:14,24:0.63:38
chr1	161275729	rs34307129	G	A	4007.77	.	AC=1;AF=0.500;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	0/1:211,192:0.48:403
chr1	161276434	rs6674383	A	G	3695.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr1	161279518	rs11579939	T	C	675.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:21,32:0.60:53
chr1	161326722	rs199612101	C	CT	45.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.128;ClippingRankSum=0.000;DB;DP=247;ExcessHet=3.0103;FS=5.460;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.24;ReadPosRankSum=0.348;SOR=1.439;set=HC	GT:AD:AF:DP	0/1:156,35:0.18:191
chr1	161483666	rs403988	T	C	6496.77	.	AC=1;AF=0.500;AN=2;DB;DP=701;set=Intersection	GT:AD:AF:DP	0/1:390,301:0.44:691
chr1	161487863	rs143182858	C	T	9819.77	.	AC=1;AF=0.500;AN=2;DB;DP=1046;set=Intersection	GT:AD:AF:DP	0/1:557,482:0.46:1039
chr1	161488017	rs150991486	T	C	2723.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:161,116:0.42:277
chr1	161494595	.	C	G	174.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.701;ClippingRankSum=0.000;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=44.91;MQRankSum=1.655;QD=3.12;ReadPosRankSum=-3.045;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:43,13:0.23:56
chr1	161495040	rs63749092	C	T	3688.77	.	AC=1;AF=0.500;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	0/1:192,170:0.47:362
chr1	161495477	rs72633678	A	T	6304.77	.	AC=1;AF=0.500;AN=2;DB;DP=644;set=Intersection	GT:AD:AF:DP	0/1:344,298:0.46:642
chr1	161495885	rs404508	T	C	6697.77	.	AC=1;AF=0.500;AN=2;DB;DP=616;set=Intersection	GT:AD:AF:DP	0/1:307,303:0.50:610
chr1	161496134	rs753856	C	G	1829.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:166,85:0.34:251
chr1	161496178	rs368844	G	A	1104.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:145,52:0.26:197
chr1	161514542	rs396991	A	C	3303.77	.	AC=1;AF=0.500;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	0/1:219,163:0.43:382
chr1	161518159	rs200225944	C	T	115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.136;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=8.275;MLEAC=1;MLEAF=0.500;MQ=42.97;MQRankSum=0.125;QD=1.10;ReadPosRankSum=-1.625;SOR=0.130;set=HC	GT:AD:AF:DP	0/1:91,14:0.13:105
chr1	161518214	rs148181339	T	C	850.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.380;ClippingRankSum=0.000;DB;DP=360;ExcessHet=3.0103;FS=17.313;MLEAC=1;MLEAF=0.500;MQ=49.97;MQRankSum=-4.404;QD=2.39;ReadPosRankSum=0.941;SOR=0.247;set=HC	GT:AD:AF:DP	0/1:283,73:0.21:356
chr1	161518336	rs77144485	C	T	275.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.205;ClippingRankSum=0.000;DB;DP=928;ExcessHet=3.0103;FS=7.176;MLEAC=1;MLEAF=0.500;MQ=57.22;MQRankSum=-20.041;QD=0.30;ReadPosRankSum=-2.294;SOR=1.509;set=HC	GT:AD:AF:DP	0/1:812,108:0.12:920
chr1	161518908	rs138032965	C	T	659.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:47,33:0.41:80
chr1	161559256	rs114945036	C	T	1119.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:118,57:0.33:175
chr1	161559327	rs3933769	A	G	2590.77	.	AC=1;AF=0.500;AN=2;DB;DP=482;set=Intersection	GT:AD:AF:DP	0/1:328,149:0.31:477
chr1	161559571	rs138747765	C	T	1336.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.600;ClippingRankSum=0.000;DB;DP=276;ExcessHet=3.0103;FS=2.599;MLEAC=1;MLEAF=0.500;MQ=47.20;MQRankSum=-1.785;QD=4.97;ReadPosRankSum=-0.470;SOR=0.506;set=HC	GT:AD:AF:DP	0/1:193,76:0.28:269
chr1	161561234	rs142137670	G	C	2775.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:146,128:0.47:274
chr1	161561287	rs151302833	A	G	2770.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.94;QD=29.79;SOR=1.994;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr1	161562058	rs143311449	G	T	202.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=28.97;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	161563386	rs72700089	C	T	588.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:13,26:0.67:39
chr1	161565324	rs61801822	C	T	4779.77	.	AC=1;AF=0.500;AN=2;DB;DP=1053;set=Intersection	GT:AD:AF:DP	0/1:760,277:0.27:1037
chr1	161565479	rs111504845	G	A	5105.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.722;ClippingRankSum=0.000;DB;DP=1053;ExcessHet=3.0103;FS=1.253;MLEAC=1;MLEAF=0.500;MQ=58.41;MQRankSum=1.367;QD=4.97;ReadPosRankSum=1.257;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:733,295:0.29:1028
chr1	161569419	rs430178	C	G	2501.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.758;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=4.807;MLEAC=2;MLEAF=1.000;MQ=39.75;MQRankSum=-2.510;QD=30.14;ReadPosRankSum=-1.923;SOR=3.070;set=HC	GT:AD:AF:DP	1/1:2,81:0.98:83
chr1	161569569	rs138731942	C	T	4889.77	.	AC=1;AF=0.500;AN=2;DB;DP=966;set=Intersection	GT:AD:AF:DP	0/1:652,306:0.32:958
chr1	161576227	rs145679054	C	G	626.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.884;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=3.849;MLEAC=1;MLEAF=0.500;MQ=44.44;MQRankSum=-1.246;QD=13.93;ReadPosRankSum=-0.628;SOR=1.675;set=HC	GT:AD:AF:DP	0/1:18,27:0.60:45
chr1	161577204	rs200837054	G	T	3112.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.106;ClippingRankSum=0.000;DB;DP=527;ExcessHet=3.0103;FS=1.979;MLEAC=1;MLEAF=0.500;MQ=52.53;MQRankSum=1.012;QD=5.99;ReadPosRankSum=-0.384;SOR=0.876;set=HC	GT:AD:AF:DP	0/1:355,165:0.32:520
chr1	161577657	rs61802306	G	A	3033.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.541;ClippingRankSum=0.000;DB;DP=568;ExcessHet=3.0103;FS=1.232;MLEAC=1;MLEAF=0.500;MQ=58.21;MQRankSum=-11.470;QD=5.39;ReadPosRankSum=-0.769;SOR=0.578;set=HC	GT:AD:AF:DP	0/1:398,165:0.29:563
chr1	161577669	rs61802307	G	A	8182.77	.	AC=1;AF=0.500;AN=2;DB;DP=527;set=Intersection	GT:AD:AF:DP	0/1:180,342:0.66:522
chr1	161594226	rs61803008	C	T	7980.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr1	161594246	rs61803009	G	T	10401.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:1,364:1.00:365
chr1	161594525	rs61803010	GT	CG	5687.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr1	161596283	rs418215	G	A	4211.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr1	161599693	rs76714703	T	C	7491.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.965;ClippingRankSum=0.000;DB;DP=298;ExcessHet=3.0103;FS=3.187;MLEAC=2;MLEAF=1.000;MQ=47.35;MQRankSum=-4.333;QD=25.31;ReadPosRankSum=-1.379;SOR=1.183;set=HC	GT:AD:AF:DP	1/1:20,276:0.93:296
chr1	161600109	rs149686267	C	T	2248.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.235;ClippingRankSum=0.000;DB;DP=362;ExcessHet=3.0103;FS=2.396;MLEAC=1;MLEAF=0.500;MQ=55.06;MQRankSum=-0.947;QD=6.32;ReadPosRankSum=-1.613;SOR=0.839;set=HC	GT:AD:AF:DP	0/1:230,126:0.35:356
chr1	161600287	rs143868437	AT	A	1445.73	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:24,60:0.71:84
chr1	161600995	rs34085961	C	T	3011.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.230;ClippingRankSum=0.000;DB;DP=681;ExcessHet=3.0103;FS=1.227;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.44;ReadPosRankSum=-0.559;SOR=0.777;set=HC	GT:AD:AF:DP	0/1:486,193:0.28:679
chr1	161601118	rs61803026	G	C	565.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.989;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=2.274;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.49;ReadPosRankSum=-1.128;SOR=0.365;set=HC	GT:AD:AF:DP	0/1:95,31:0.25:126
chr1	161601133	rs61803027	T	C	3105.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr1	161642985	rs182968886	G	A	5354.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.029;ClippingRankSum=0.000;DB;DP=335;ExcessHet=3.0103;FS=11.571;MLEAC=1;MLEAF=0.500;MQ=52.49;MQRankSum=9.762;QD=15.98;ReadPosRankSum=2.025;SOR=0.342;set=HC	GT:AD:AF:DP	0/1:96,239:0.71:335
chr1	161643044	rs74870676	A	G	1200.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:232,74:0.24:306
chr1	161645259	rs1674759	T	G	235.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:4,10:0.71:14
chr1	161676904	rs1340977	T	C	459.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	161676970	rs1340978	A	G	1621.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr1	161680258	rs6427618	G	A	8677.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:0,325:1.00:325
chr1	161680413	.	G	GA	50.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.179;ClippingRankSum=0.000;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=2.310;QD=0.48;ReadPosRankSum=-0.632;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:85,20:0.19:105
chr1	161683136	rs11746	G	A	11012.77	.	AC=2;AF=1.00;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	1/1:0,397:1.00:397
chr1	161693199	rs35002732	C	T	2325.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:211,122:0.37:333
chr1	161695639	rs7520519	G	T	6653.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr1	161696088	rs1417582	T	C	14743.77	.	AC=2;AF=1.00;AN=2;DB;DP=543;set=Intersection	GT:AD:AF:DP	1/1:0,531:1.00:531
chr1	161696782	rs11585450	G	C	4982.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr1	161696998	rs1875763	C	G	2317.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:1,83:0.99:84
chr1	161721351	rs7540096	A	G	1663.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	161721402	.	G	GT	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.560;ClippingRankSum=0.000;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=2.450;QD=0.25;ReadPosRankSum=1.080;SOR=0.589;set=HC	GT:AD:AF:DP	0/1:105,22:0.17:127
chr1	161721707	rs1063178	C	T	1918.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr1	161722779	rs35439833	C	CAAA	2934.73	.	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.12;QD=33.35;SOR=3.171;set=HC	GT:AD:AF:DP	1/1:6,82:0.93:88
chr1	161736035	rs2298019	A	G	3235.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr1	161751741	rs1058405	A	G	4659.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:4,180:0.98:184
chr1	161761203	rs141465868	G	A	1040.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:61,52:0.46:113
chr1	161822959	rs2340717	C	T	938.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	161823011	rs2257107	T	A	2445.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr1	161823197	rs3215134	G	GT	10426.73	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:0,330:1.00:330
chr1	161928327	rs9482	A	G	6068.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr1	161954448	rs12726227	C	T	1350.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	161967681	rs2499836	A	G	10025.77	.	AC=2;AF=1.00;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	1/1:0,382:1.00:382
chr1	161976234	rs12022536	A	G	8448.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,327:1.00:327
chr1	161976272	rs34863451	G	GA	5586.73	.	AC=2;AF=1.00;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	1/1:23,276:0.92:299
chr1	162302635	rs347306	T	C	3280.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr1	162302689	rs347307	C	T	7670.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr1	162313597	rs347278	T	C	16642.77	.	AC=2;AF=1.00;AN=2;DB;DP=625;set=Intersection	GT:AD:AF:DP	1/1:0,615:1.00:615
chr1	162335052	rs905721	C	T	4186.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr1	162335424	rs1964052	T	C	1066.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	162343774	rs7512126	A	G	8829.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:0,341:1.00:341
chr1	162344102	rs2282397	C	T	13870.77	.	AC=2;AF=1.00;AN=2;DB;DP=519;set=Intersection	GT:AD:AF:DP	1/1:0,507:1.00:507
chr1	162344390	rs164159	A	G	8882.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr1	162345091	rs164181	G	A	2690.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr1	162345199	rs164182	T	G	2793.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:114,134:0.54:248
chr1	162346433	rs150155141	CA	C	1782.73	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:180,121:0.40:301
chr1	162348637	rs164187	C	T	553.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	162348662	rs164188	C	T	889.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	162352819	rs1123005	A	G	1041.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:30,37:0.55:67
chr1	162367103	rs34001279	G	T	9981.77	.	AC=1;AF=0.500;AN=2;DB;DP=886;set=Intersection	GT:AD:AF:DP	0/1:410,469:0.53:879
chr1	162367235	rs164124	G	A	8407.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr1	162381833	rs12745630	C	G	2918.77	.	AC=1;AF=0.500;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	0/1:205,144:0.41:349
chr1	162467014	rs10919549	C	G	5868.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr1	162470961	rs5778280	A	AT	480.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.210;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.02;ReadPosRankSum=0.367;SOR=1.528;set=HC	GT:AD:AF:DP	1/1:4,28:0.88:32
chr1	162473401	.	CAAA	C	346.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.808;ClippingRankSum=0.000;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.13;MQRankSum=0.761;QD=19.26;ReadPosRankSum=0.978;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:3,15:0.83:18
chr1	162560360	.	TTC	T	284.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.048;ClippingRankSum=0.000;DP=315;ExcessHet=3.0103;FS=0.770;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.17;ReadPosRankSum=-0.265;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:209,34:0.14:243
chr1	162722756	rs191037278	A	G	168.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:9,9:0.50:18
chr1	162722846	rs1632311	C	G	2778.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr1	162725655	rs1115570	A	C	967.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	162740327	rs1780003	T	C	18205.77	.	AC=2;AF=1.00;AN=2;DB;DP=674;set=Intersection	GT:AD:AF:DP	1/1:0,667:1.00:667
chr1	162742117	rs17487682	C	T	668.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:92,40:0.30:132
chr1	162742180	rs1704762	T	C	1416.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	162743418	rs1355287	G	T	4536.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr1	162748588	rs907074	C	A	1859.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr1	162754049	rs11338	G	A	718.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.026;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.99;MQRankSum=0.792;QD=8.98;ReadPosRankSum=0.177;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:45,35:0.44:80
chr1	162754212	rs188149666	G	A	994.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:49,43:0.47:92
chr1	162754244	rs61812969	T	G	1778.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.928;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.57;MQRankSum=-3.922;QD=32.34;ReadPosRankSum=-0.695;SOR=1.054;set=HC	GT:AD:AF:DP	1/1:1,54:0.98:55
chr1	162760551	rs1704754	C	T	2074.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.103;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.48;MQRankSum=1.936;QD=11.10;ReadPosRankSum=-1.397;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:87,100:0.53:187
chr1	162760554	rs71519246	T	C	7247.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.69;QD=35.88;SOR=0.957;set=HC	GT:AD:AF:DP	1/1:0,202:1.00:202
chr1	162765475	rs2684884	G	C	4546.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr1	162766476	rs1780019	C	T	6826.77	.	AC=1;AF=0.500;AN=2;DB;DP=692;set=Intersection	GT:AD:AF:DP	0/1:350,328:0.48:678
chr1	162774236	rs77482353	A	G	608.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:31,24:0.44:55
chr1	162787243	rs2803865	T	A	341.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:102,25:0.20:127
chr1	162787358	rs145485448	C	T	4000.77	.	AC=1;AF=0.500;AN=2;DB;DP=503;set=Intersection	GT:AD:AF:DP	0/1:290,212:0.42:502
chr1	162822771	rs2684878	A	C	3045.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr1	162824553	rs78851184	G	A	2785.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:139,127:0.48:266
chr1	162825457	rs77227460	C	A	4001.77	.	AC=1;AF=0.500;AN=2;DB;DP=442;set=Intersection	GT:AD:AF:DP	0/1:232,199:0.46:431
chr1	163038613	rs7515900	C	A	989.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:30,40:0.57:70
chr1	163038853	rs10917671	G	A	1841.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:70,83:0.54:153
chr1	163117351	rs3768560	G	T	1015.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:44,45:0.51:89
chr1	163122528	rs1354939	G	C	1176.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:46,50:0.52:96
chr1	163142537	rs10917691	G	A	528.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:10,22:0.69:32
chr1	163142555	rs12035879	G	A	274.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:8,11:0.58:19
chr1	163187263	rs2814368	G	A	552.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:42,28:0.40:70
chr1	163298768	rs5778324	T	TA	219.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.514;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.149;QD=3.92;ReadPosRankSum=0.554;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:34,22:0.39:56
chr1	163307944	rs2175015	T	C	909.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:20,36:0.64:56
chr1	163309219	rs1509022	A	T	3379.77	.	AC=1;AF=0.500;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	0/1:201,170:0.46:371
chr1	163309302	rs2999852	C	T	5459.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr1	163310020	rs78023909	G	A	142.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:12,8:0.40:20
chr1	163315350	rs10753611	G	C	328.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:23,14:0.38:37
chr1	164529120	rs2275558	G	A	2101.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.479;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=5.974;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.40;ReadPosRankSum=-1.013;SOR=0.292;set=HC	GT:AD:AF:DP	0/1:103,99:0.49:202
chr1	164559536	rs1780335	A	G	433.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:56,28:0.33:84
chr1	164789444	rs1538488	A	G	3913.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr1	165173216	rs1354509	A	G	4889.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr1	165175374	rs4656435	G	A	1496.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	165180089	rs1532815	T	A	2540.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr1	165370400	rs56362364	G	C	680.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:25,26:0.51:51
chr1	165370475	rs10918169	G	C	1328.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.186;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=2.890;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.36;ReadPosRankSum=3.464;SOR=0.935;set=HC	GT:AD:AF:DP	0/1:91,68:0.43:159
chr1	165375895	rs283697	A	C	599.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	165376043	rs283696	T	C	3397.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr1	165376227	rs111545739	C	CCG	1852.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.11;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr1	165376231	.	CTG	C	1762.73	.	AC=2;AF=1.00;AN=2;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.20;SOR=2.133;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	165377389	rs283692	T	C	2307.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr1	165377552	rs2134095	G	A	5483.77	.	AC=1;AF=0.500;AN=2;DB;DP=558;set=Intersection	GT:AD:AF:DP	0/1:283,273:0.49:556
chr1	165378729	rs66800417	TACAC	T,TAC	6678.73	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;DB;DP=185;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=41.48;SOR=1.578;set=HC	GT:AD:AF:DP	1/2:0,85,76:0.53,0.47:161
chr1	165378733	rs12406497	C	T	2077.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.000;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=7.302;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.44;ReadPosRankSum=1.292;SOR=0.335;set=HC	GT:AD:AF:DP	0/1:92,75:0.45:167
chr1	165378733	.	CAC	TAT	2944	.	AC=1;AF=0.500;AN=2;BRF=0.39;FR=0.5000;HP=2;HapScore=1;MGOF=4;MMLQ=28;MQ=60.0;NF=34;NR=21;PP=2944;QD=20;SC=TGTGTATACACACACACACAC;SbPval=0.23;Source=Platypus;TC=141;TCF=97;TCR=44;TR=55;WE=165378744;WS=165378719;set=Platypus	GT:AD:AF:DP	0/1:86,55:0.39:141
chr1	165378735	rs138671935	C	T	3254.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.807;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=2.805;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.39;ReadPosRankSum=1.610;SOR=0.501;set=HC	GT:AD:AF:DP	0/1:92,85:0.48:177
chr1	165386567	rs2281986	C	T	505.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:22,21:0.49:43
chr1	165389129	rs1128977	G	A	2471.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:106,112:0.51:218
chr1	165389285	rs157870	C	G	3313.77	.	AC=1;AF=0.500;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	0/1:226,166:0.42:392
chr1	165398115	rs113471	T	C	3097.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:153,155:0.50:308
chr1	165513439	rs285446	A	C	191.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.97;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	165513456	rs285445	A	T	308.56	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.307;ClippingRankSum=0.000;DB;DP=12;ExcessHet=3.0103;FS=6.021;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.71;ReadPosRankSum=-1.036;SOR=2.430;set=HC	GT:AD:AF:DP	1/1:1,11:0.92:12
chr1	165513463	rs285444	C	G	369.98	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.382;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=4.472;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.43;ReadPosRankSum=-1.135;SOR=1.447;set=HC	GT:AD:AF:DP	1/1:1,13:0.93:14
chr1	165601365	rs4147596	T	C	2978.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr1	165601466	rs9333378	G	A	3796.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr1	165624799	rs8133	G	T	769.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:29,36:0.55:65
chr1	165630475	rs7544840	C	T	404.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:18,18:0.50:36
chr1	165630495	rs7511691	T	C	471.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:35,24:0.41:59
chr1	165630698	rs6667681	A	G	667.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:49,35:0.42:84
chr1	165634425	rs3820362	C	G	2355.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:84,108:0.56:192
chr1	165636749	rs2176151	A	G	1197.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:62,53:0.46:115
chr1	165648559	rs4646897	T	G	1406.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:55,63:0.53:118
chr1	165648886	rs4646896	G	A	1980.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.494;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.51;ReadPosRankSum=0.915;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:52,55:0.51:107
chr1	165648894	rs4646895	C	G	1880.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.699;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.909;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.37;ReadPosRankSum=-0.804;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:42,46:0.52:88
chr1	165651153	rs2882006	T	A	195.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:12,10:0.45:22
chr1	165651502	rs1913844	G	C	358.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:15,14:0.48:29
chr1	165652273	rs1143659	A	G	4107.77	.	AC=1;AF=0.500;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	0/1:214,206:0.49:420
chr1	165652445	rs4233407	A	G	1491.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:55,59:0.52:114
chr1	165667781	rs12408101	T	G	3085.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:123,142:0.54:265
chr1	165697341	rs78363884	G	A	2323.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:124,111:0.47:235
chr1	165721223	rs7512095	T	C	900.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	165737704	rs2790053	C	G	15178.77	.	AC=2;AF=1.00;AN=2;DB;DP=616;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.84;SOR=0.866;set=HC	GT:AD:AF:DP	1/1:0,611:1.00:611
chr1	165859630	rs477033	C	G	8312.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.10;QD=26.56;SOR=0.850;set=HC	GT:AD:AF:DP	1/1:0,313:1.00:313
chr1	165859640	rs138035087	G	GTGT	4913.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.657;ClippingRankSum=0.000;DB;DP=297;ExcessHet=3.0103;FS=1.469;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.809;QD=18.33;ReadPosRankSum=2.282;SOR=0.594;set=HC	GT:AD:AF:DP	0/1:139,129:0.48:268
chr1	166029970	rs4353067	T	C	6286.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr1	166124134	rs896402	A	G	16397.77	.	AC=2;AF=1.00;AN=2;DB;DP=607;set=Intersection	GT:AD:AF:DP	1/1:0,603:1.00:603
chr1	166591043	rs530513	T	C	3590.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr1	166826773	rs6675153	C	T	1675.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	166827674	rs6691431	T	C	1012.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	166831404	rs2075947	A	C	1455.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	166831703	rs35181816	C	CA	1856.73	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr1	166833199	rs2272793	C	A	7870.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr1	166905791	.	T	C	2927.77	.	AC=1;AF=0.500;AN=2;DP=250;set=Intersection	GT:AD:AF:DP	0/1:117,132:0.53:249
chr1	166944273	rs67253020	TCACA	T	550.73	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:3,21:0.88:24
chr1	166961857	rs7511933	G	A	3626.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr1	166962119	.	G	GT	187.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.770;ClippingRankSum=0.000;DP=235;ExcessHet=3.0103;FS=3.614;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=3.137;QD=1.09;ReadPosRankSum=0.735;SOR=0.341;set=HC	GT:AD:AF:DP	0/1:136,37:0.21:173
chr1	166963234	rs3736988	T	C	3409.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr1	167032796	rs12742013	C	T	1311.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	167042590	rs12139875	C	T	2490.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:94,109:0.54:203
chr1	167051418	rs138801199	CAG	C	50.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.406;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=1.817;MLEAC=1;MLEAF=0.500;MQ=60.41;MQRankSum=3.700;QD=0.96;ReadPosRankSum=0.294;SOR=1.262;set=HC	GT:AD:AF:DP	0/1:46,7:0.13:53
chr1	167059336	rs2281964	C	T	1443.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:55,53:0.49:108
chr1	167059462	rs2281963	G	C	6866.77	.	AC=1;AF=0.500;AN=2;DB;DP=664;set=Intersection	GT:AD:AF:DP	0/1:322,325:0.50:647
chr1	167059575	rs28384507	G	T	6445.77	.	AC=1;AF=0.500;AN=2;DB;DP=647;set=Intersection	GT:AD:AF:DP	0/1:319,316:0.50:635
chr1	167095163	rs267745	G	C	2827.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:146,140:0.49:286
chr1	167097567	rs61748784	G	A	3375.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:180,151:0.46:331
chr1	167097739	rs2281959	C	A	1185.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:84,62:0.42:146
chr1	167345218	rs2273963	A	C	1781.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:91,84:0.48:175
chr1	167345511	rs12730995	T	G	978.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.551;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=2.214;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.55;ReadPosRankSum=0.854;SOR=0.397;set=HC	GT:AD:AF:DP	0/1:33,45:0.58:78
chr1	167353258	rs35617253	AT	A	4841.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.000;ClippingRankSum=0.000;DB;DP=283;ExcessHet=3.0103;FS=3.395;MLEAC=2;MLEAF=1.000;MQ=60.34;MQRankSum=0.301;QD=20.60;ReadPosRankSum=1.985;SOR=2.181;set=HC	GT:AD:AF:DP	1/1:2,233:0.99:235
chr1	167367193	rs7524019	C	T	2374.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:125,114:0.48:239
chr1	167382374	rs10753757	A	C	4951.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;MQ=60.01;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr1	167382399	rs67647055	AGTGT	A	3672.73	.	AC=2;AF=1.00;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.16;QD=40.81;SOR=1.759;set=HC	GT:AD:AF:DP	1/1:1,89:0.99:90
chr1	167385063	rs74119502	GC	AT	6128.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;JOINED;set=Intersection	GT:AD:AF:DP	0/1:173,163:0.49:336
chr1	167385178	rs35216157	G	GA	850.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.581;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=5.806;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.09;ReadPosRankSum=-0.552;SOR=0.278;set=HC	GT:AD:AF:DP	0/1:51,69:0.57:120
chr1	167385324	.	TAA	T,TA	643.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.631;ClippingRankSum=0.000;DP=88;ExcessHet=3.0103;FS=1.368;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=10.38;ReadPosRankSum=1.382;SOR=1.190;set=HC	GT:AD:AF:DP	1/2:11,21,30:0.34,0.48:62
chr1	167403212	rs952963	G	A	1555.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:80,73:0.48:153
chr1	167403504	rs952962	A	G	1227.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:49,56:0.53:105
chr1	167404078	rs3108156	G	A	1012.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:51,52:0.50:103
chr1	167408460	rs33930807	G	A	1354.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:84,71:0.46:155
chr1	167408565	rs12141641	G	T	2694.77	.	AC=1;AF=0.500;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	0/1:214,142:0.40:356
chr1	167408670	rs840016	C	T	2682.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:113,124:0.52:237
chr1	167515272	rs7513428	T	C	2387.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr1	167599583	rs3738221	G	A	3154.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr1	167673738	rs34762939	T	TA	449.73	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:32,27:0.46:59
chr1	167778843	rs3213588	G	A	734.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:35,30:0.46:65
chr1	167793670	rs1476074	C	T	1230.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:1,45:0.98:46
chr1	167802555	rs79602588	T	C	404.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:17,19:0.53:36
chr1	167803349	rs16859735	T	A	3862.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:138,181:0.57:319
chr1	167803823	rs3752608	G	T	5086.77	.	AC=1;AF=0.500;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	0/1:211,223:0.51:434
chr1	167803896	rs2863273	T	A	1560.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:71,59:0.45:130
chr1	167805439	rs7550383	G	A	810.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:39,38:0.49:77
chr1	167806647	rs1034463	T	A	11493.77	.	AC=2;AF=1.00;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	1/1:3,434:0.99:437
chr1	167806696	rs1034464	T	C	6188.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr1	167806714	rs1034465	G	A	1996.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:77,90:0.54:167
chr1	167815167	rs2269678	T	C	3710.77	.	AC=1;AF=0.500;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	0/1:191,169:0.47:360
chr1	167815610	rs2269679	C	A	2351.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr1	167817639	rs203795	A	G	9984.77	.	AC=2;AF=1.00;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	1/1:0,383:1.00:383
chr1	167823512	rs3738236	T	C	3969.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr1	167825485	rs2071921	T	C	3098.77	.	AC=1;AF=0.500;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	0/1:191,158:0.45:349
chr1	167825718	rs7537851	C	T	291.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:17,13:0.43:30
chr1	167839679	rs75383572	C	T	832.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:29,36:0.55:65
chr1	167849414	rs203849	A	G	1104.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:100,60:0.38:160
chr1	167889145	rs11445941	C	CA	140.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.449;ClippingRankSum=0.000;DB;DP=282;ExcessHet=3.0103;FS=1.364;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.56;ReadPosRankSum=-0.481;SOR=0.857;set=HC	GT:AD:AF:DP	0/1:207,44:0.18:251
chr1	167906239	rs203788	A	C	2106.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr1	167971979	rs436256	GC	TG	241.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;JOINED;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr1	168013850	rs11558511	T	C	1019.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:50,52:0.51:102
chr1	168014204	rs41271647	T	A	6411.77	.	AC=1;AF=0.500;AN=2;DB;DP=550;set=Intersection	GT:AD:AF:DP	0/1:236,305:0.56:541
chr1	168035104	rs380095	G	C	1785.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr1	168106716	rs6664903	T	C	9162.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chr1	168260377	rs140045735	A	AGTTTC	5978.73	.	AC=1;AF=0.500;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	0/1:184,149:0.45:333
chr1	168262289	rs7543224	A	G	2319.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:69,94:0.58:163
chr1	168262522	.	A	AGTGTTT	364.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.422;ClippingRankSum=0.000;DP=178;ExcessHet=3.0103;FS=1.567;MLEAC=1;MLEAF=0.500;MQ=66.69;MQRankSum=-0.786;QD=7.76;ReadPosRankSum=0.108;SOR=0.354;set=HC	GT:AD:AF:DP	0/1:26,21:0.45:47
chr1	168262523	rs72294615	G	GTGTT	194.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.361;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=66.83;MQRankSum=-1.109;QD=4.06;ReadPosRankSum=1.737;SOR=0.929;set=HC	GT:AD:AF:DP	0/1:34,14:0.29:48
chr1	168269523	rs79425263	C	T	1615.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:87,77:0.47:164
chr1	168277966	rs71632355	G	A	3983.77	.	AC=1;AF=0.500;AN=2;DB;DP=475;set=Intersection	GT:AD:AF:DP	0/1:263,198:0.43:461
chr1	168278264	rs1883148	G	A	1211.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:42,49:0.54:91
chr1	168282261	rs3885717	T	A	2772.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:141,127:0.47:268
chr1	168510122	rs470733	T	A	1059.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:67,47:0.41:114
chr1	168511155	rs76400946	T	C	956.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:38,44:0.54:82
chr1	168513067	rs61801330	C	A	1668.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:143,88:0.38:231
chr1	168513109	rs3820404	A	G	1353.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:243,87:0.26:330
chr1	168513228	rs3820407	G	A	459.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.053;ClippingRankSum=0.000;DB;DP=232;ExcessHet=3.0103;FS=2.371;MLEAC=1;MLEAF=0.500;MQ=57.36;MQRankSum=-14.709;QD=2.01;ReadPosRankSum=1.280;SOR=0.951;set=HC	GT:AD:AF:DP	0/1:192,37:0.16:229
chr1	168513274	rs3820410	A	G	188.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.421;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=1.091;MLEAC=1;MLEAF=0.500;MQ=57.87;MQRankSum=-9.922;QD=1.53;ReadPosRankSum=0.312;SOR=0.970;set=HC	GT:AD:AF:DP	0/1:105,18:0.15:123
chr1	168513320	rs474414	A	G	197.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:40,13:0.25:53
chr1	168545949	rs34933908	G	A	10034.77	.	AC=2;AF=1.00;AN=2;DB;DP=492;set=Intersection	GT:AD:AF:DP	1/1:51,431:0.89:482
chr1	168549422	rs6427130	C	T	2548.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:147,122:0.45:269
chr1	168550512	rs200980747	G	C	1138.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:119,53:0.31:172
chr1	168550535	rs79981832	A	G	2075.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:37,76:0.67:113
chr1	168698173	rs1052591	C	T	4324.77	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:158,201:0.56:359
chr1	169076212	rs1200128	G	C	1326.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	169080837	rs1200138	C	T	4700.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr1	169094100	rs968304	T	A	2431.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:140,120:0.46:260
chr1	169099061	rs1200157	G	A	339.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:17,16:0.48:33
chr1	169102223	rs61803315	G	C	2546.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:127,105:0.45:232
chr1	169138027	rs10919082	A	G	770.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:50,38:0.43:88
chr1	169138307	rs4656656	C	A	847.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.252;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.92;ReadPosRankSum=-0.496;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:61,46:0.43:107
chr1	169138318	rs4656657	T	A	859.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:59,46:0.44:105
chr1	169138868	rs3737681	C	T	1146.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:54,52:0.49:106
chr1	169159866	rs7526721	G	T	818.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.015;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=2.679;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.75;ReadPosRankSum=0.234;SOR=1.050;set=HC	GT:AD:AF:DP	0/1:15,37:0.71:52
chr1	169200111	rs10800420	C	T	819.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:49,37:0.43:86
chr1	169216366	rs35977750	TCA	T	3416.73	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:80,89:0.53:169
chr1	169216412	rs2040445	C	G	2216.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr1	169256501	rs4589164	C	T	2860.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:152,129:0.46:281
chr1	169272299	rs10919130	A	T	1218.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:65,61:0.48:126
chr1	169272451	rs10800427	A	T	2249.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.11;SOR=1.565;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	169272451	.	AGG	TGA	1596	.	AC=2;AF=1.00;AN=2;BRF=0.31;FR=1.0000;HP=4;HapScore=1;MGOF=0;MMLQ=25;MQ=60.0;NF=14;NR=27;PP=1596;QD=40.2309237771;SC=ATAATCAAAAAGGCAATAGTT;SbPval=0.53;Source=Platypus;TC=42;TCF=14;TCR=28;TR=41;WE=169272461;WS=169272441;set=Platypus	GT:AD:AF:DP	1/1:1,41:0.98:42
chr1	169272453	rs10800428	G	A	2249.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.00;SOR=1.519;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	169279196	rs34054662	T	TA	961.73	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:51,52:0.50:103
chr1	169293721	rs1140523	G	A	3957.77	.	AC=1;AF=0.500;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	0/1:184,178:0.49:362
chr1	169345704	rs12563090	G	A	1563.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:87,76:0.47:163
chr1	169349608	rs3830533	C	CTA	775.73	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:27,21:0.44:48
chr1	169351596	rs3905328	A	G	385.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:43,20:0.32:63
chr1	169364479	rs17576071	T	G	3962.77	.	AC=1;AF=0.500;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	0/1:161,187:0.54:348
chr1	169390957	rs35107735	A	T	1138.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:44,46:0.51:90
chr1	169391154	rs3820059	A	G	1541.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:90,76:0.46:166
chr1	169394226	rs10919168	A	G	3467.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr1	169435027	rs2678166	C	T	5602.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr1	169455008	rs2072757	G	A	1189.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:66,59:0.47:125
chr1	169455435	rs2056926	G	C	4556.77	.	AC=1;AF=0.500;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	0/1:188,211:0.53:399
chr1	169493953	rs12131397	A	C	2198.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:80,101:0.56:181
chr1	169498834	rs6009	T	C	2848.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr1	169510233	rs9332607	G	A	5714.77	.	AC=1;AF=0.500;AN=2;DB;DP=488;set=Intersection	GT:AD:AF:DP	0/1:216,266:0.55:482
chr1	169510475	rs1046712	G	T	6192.77	.	AC=1;AF=0.500;AN=2;DB;DP=721;set=Intersection	GT:AD:AF:DP	0/1:412,309:0.43:721
chr1	169519049	rs6025	T	C	6254.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr1	169519671	rs59548259	T	C	433.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:23,20:0.47:43
chr1	169521849	rs6035	T	C	1580.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:49,72:0.60:121
chr1	169525766	rs2239853	T	C	500.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:28,21:0.43:49
chr1	169525808	rs2239854	G	A	1392.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.594;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=10.142;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.44;ReadPosRankSum=-2.969;SOR=0.218;set=HC	GT:AD:AF:DP	0/1:48,64:0.57:112
chr1	169528384	rs6023	G	A	2945.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:119,132:0.53:251
chr1	169551549	.	T	TAAA	68.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.930;ClippingRankSum=-0.000;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.59;ReadPosRankSum=1.292;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:5,3:0.38:8
chr1	169551682	rs6028	T	C	639.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:18,31:0.63:49
chr1	169555367	rs372224504	TA	T	67.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.780;QD=0.93;ReadPosRankSum=0.980;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:55,18:0.25:73
chr1	169559326	rs3917853	G	A	3556.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:86,93:0.52:179
chr1	169559333	rs3917852	AT	A	3708.73	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:100,101:0.50:201
chr1	169559635	rs3917851	T	C	1061.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:62,52:0.46:114
chr1	169560471	rs3917840	A	G	136.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:11,9:0.45:20
chr1	169560485	rs3917839	T	G	176.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:13,10:0.43:23
chr1	169560727	rs35706397	T	TA,TAA	1111.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.387;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=3.466;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=16.59;ReadPosRankSum=-0.060;SOR=0.965;set=HC	GT:AD:AF:DP	1/2:9,29,29:0.43,0.43:67
chr1	169563062	rs17522707	G	A	2678.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:137,123:0.47:260
chr1	169564130	rs1569471	T	G	1836.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:65,78:0.55:143
chr1	169564167	rs742127	G	C	984.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:37,40:0.52:77
chr1	169566313	rs6127	C	T	9676.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:2,361:0.99:363
chr1	169572545	rs201543202	CTGTGTGTG	C	1489.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.435;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=3.067;MLEAC=1;MLEAF=0.500;MQ=59.58;MQRankSum=1.579;QD=20.69;ReadPosRankSum=2.939;SOR=0.294;set=HC	GT:AD:AF:DP	0/1:28,44:0.61:72
chr1	169572555	rs201923719	G	C	397.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.640;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=2.921;MLEAC=1;MLEAF=0.500;MQ=59.57;MQRankSum=1.337;QD=7.10;ReadPosRankSum=2.276;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:36,20:0.36:56
chr1	169572557	rs199963384	G	C	956.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.944;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=2.774;MLEAC=1;MLEAF=0.500;MQ=59.56;MQRankSum=1.754;QD=17.40;ReadPosRankSum=2.357;SOR=0.358;set=HC	GT:AD:AF:DP	0/1:28,27:0.49:55
chr1	169698657	rs3917455	A	G	3649.77	.	AC=1;AF=0.500;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	0/1:172,166:0.49:338
chr1	169698825	rs1534904	T	G	9921.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:0,356:1.00:356
chr1	169698921	rs2076059	C	T	1562.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:50,69:0.58:119
chr1	169699819	rs3917419	G	A	1211.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:70,55:0.44:125
chr1	169699839	.	GT	G	50.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.329;ClippingRankSum=0.000;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.01;ReadPosRankSum=-0.988;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:36,14:0.28:50
chr1	169762807	rs10489177	T	G	6240.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr1	169768033	rs6680938	T	C	1270.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	169768080	rs6668114	C	A	2507.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr1	169795214	rs57068023	CT	C	1751.73	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr1	169795276	rs6682137	A	C	1006.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	169797127	rs6427223	G	A	7132.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr1	169819605	rs6664099	A	G	2376.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr1	169823296	rs112604424	G	GCTTGA	3429.73	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr1	169823718	rs4656197	T	C	12815.77	.	AC=2;AF=1.00;AN=2;DB;DP=490;set=Intersection	GT:AD:AF:DP	1/1:0,483:1.00:483
chr1	169831993	rs7525259	A	G	2638.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr1	169835950	rs12133843	A	C	643.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	169839595	rs10919260	A	G	3817.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr1	169847683	rs6683056	G	A	1816.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr1	169890933	rs518928	A	G	8458.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chr1	169891056	rs3838393	CT	C	715.73	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:3,39:0.93:42
chr1	169941761	rs511443	A	T	1218.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	169947146	rs11396984	C	CA	500.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.278;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.72;MQRankSum=0.500;QD=17.88;ReadPosRankSum=-0.491;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:2,26:0.93:28
chr1	169951748	rs638486	A	G	901.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	169952385	rs2057249	G	T	4103.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr1	170001151	rs11277624	ATACTCATT	A	3476.73	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr1	170004508	rs12750962	A	T	1018.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	170115156	rs550297	G	A	8177.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr1	170501385	rs7531125	A	C	3740.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr1	170501456	rs11578119	C	T	1222.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:58,61:0.51:119
chr1	170502517	rs1412892	A	G	445.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	170521376	rs913257	G	A	4033.77	.	AC=1;AF=0.500;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	0/1:212,183:0.46:395
chr1	170633186	rs11286665	AT	A	241.76	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.606;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.47;MQRankSum=0.574;QD=10.51;ReadPosRankSum=-0.482;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:4,19:0.83:23
chr1	170633229	.	C	CCTCTCTCTCTCT	329.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.898;ClippingRankSum=0.000;DP=52;ExcessHet=3.0103;FS=10.177;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=-0.556;QD=7.49;ReadPosRankSum=-0.084;SOR=0.432;set=HC	GT:AD:AF:DP	0/1:28,16:0.36:44
chr1	170916646	rs4656817	G	T	3877.77	.	AC=1;AF=0.500;AN=2;DB;DP=468;set=Intersection	GT:AD:AF:DP	0/1:272,194:0.42:466
chr1	170927572	rs35425940	T	TC	232.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.582;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=1.283;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.16;ReadPosRankSum=1.443;SOR=0.805;set=HC	GT:AD:AF:DP	0/1:151,49:0.24:200
chr1	170928671	rs2294740	T	C	2179.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.305;ClippingRankSum=0.000;DB;DP=234;ExcessHet=3.0103;FS=1.014;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.64;ReadPosRankSum=-1.376;SOR=0.767;set=HC	GT:AD:AF:DP	0/1:116,110:0.49:226
chr1	170984006	.	C	T	1445.77	.	AC=1;AF=0.500;AN=2;DP=121;set=Intersection	GT:AD:AF:DP	0/1:55,66:0.55:121
chr1	170993444	rs3077629	G	GGT	1033.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.800;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=1.570;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=0.622;QD=19.88;ReadPosRankSum=0.880;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:13,39:0.75:52
chr1	171061990	rs2064074	A	G	474.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:26,22:0.46:48
chr1	171070472	rs12404455	G	T	619.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:30,28:0.48:58
chr1	171072862	rs28363536	G	T	2213.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:112,100:0.47:212
chr1	171076966	rs2266782	G	A	7411.77	.	AC=1;AF=0.500;AN=2;DB;DP=720;set=Intersection	GT:AD:AF:DP	0/1:357,359:0.50:716
chr1	171077165	rs2066529	G	A	2051.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:92,92:0.50:184
chr1	171077198	rs1920149	G	A	3045.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:130,146:0.53:276
chr1	171077502	rs28363550	TC	T	278.73	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:17,12:0.41:29
chr1	171083174	rs909530	C	T	4045.77	.	AC=1;AF=0.500;AN=2;DB;DP=492;set=Intersection	GT:AD:AF:DP	0/1:285,203:0.42:488
chr1	171083242	rs2266780	A	G	6780.77	.	AC=1;AF=0.500;AN=2;DB;DP=704;set=Intersection	GT:AD:AF:DP	0/1:366,331:0.47:697
chr1	171083537	rs909531	T	C	868.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:44,42:0.49:86
chr1	171085314	rs2066528	A	AT	401.73	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:26,18:0.41:44
chr1	171112490	rs1736565	C	T	2446.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:108,115:0.52:223
chr1	171115483	rs72712685	A	G	2588.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:145,120:0.45:265
chr1	171115567	rs11812044	G	A	4076.77	.	AC=1;AF=0.500;AN=2;DB;DP=474;set=Intersection	GT:AD:AF:DP	0/1:271,203:0.43:474
chr1	171115645	rs11812061	G	T	2907.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:149,137:0.48:286
chr1	171116760	rs7063044	C	T	2841.77	.	AC=1;AF=0.500;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	0/1:201,148:0.42:349
chr1	171118840	rs2272797	G	A	1096.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:67,54:0.45:121
chr1	171121173	rs7889839	A	G	7561.77	.	AC=1;AF=0.500;AN=2;DB;DP=755;set=Intersection	GT:AD:AF:DP	0/1:361,381:0.51:742
chr1	171121268	rs7886938	G	A	9566.77	.	AC=1;AF=0.500;AN=2;DB;DP=946;set=Intersection	GT:AD:AF:DP	0/1:484,451:0.48:935
chr1	171121421	rs7887142	G	T	3548.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:167,161:0.49:328
chr1	171130590	.	AAC	A	82.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.140;ClippingRankSum=0.000;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.05;ReadPosRankSum=-1.587;SOR=0.814;set=HC	GT:AD:AF:DP	0/1:69,10:0.13:79
chr1	171155103	rs6657314	C	T	709.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	171162438	rs28969551	C	T	1788.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:95,86:0.48:181
chr1	171162551	rs2020868	T	TGAC	5130.73	.	AC=1;AF=0.500;AN=2;DB;DP=308;MQ=60.07;set=Intersection	GT:AD:AF:DP	0/1:158,135:0.46:293
chr1	171162583	rs2020860	T	C	2253.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:125,110:0.47:235
chr1	171165802	rs28369860	TG	T	1570.73	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:62,49:0.44:111
chr1	171168584	rs2020862	CA	TG	7918.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr1	171168693	rs7542361	C	T	509.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:17,21:0.55:38
chr1	171176912	rs2020865	T	G	1105.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:64,57:0.47:121
chr1	171177119	rs2075989	T	C	393.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:10,16:0.62:26
chr1	171227216	rs10912675	T	C	5561.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr1	171227464	rs12142492	T	C	442.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:20,19:0.49:39
chr1	171227487	rs12141555	A	G	840.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	171244759	rs2076320	A	C	530.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:25,26:0.51:51
chr1	171250044	rs742350	C	T	3555.77	.	AC=1;AF=0.500;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	0/1:192,171:0.47:363
chr1	171251509	rs12091482	G	T	873.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:43,39:0.48:82
chr1	171252287	rs1126692	A	G	1754.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:79,83:0.51:162
chr1	171254794	rs12954	C	T	479.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:8,18:0.69:26
chr1	171292017	rs2076322	A	G	866.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:22,33:0.60:55
chr1	171301033	rs2294483	C	G	1540.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	171301043	rs71103398	G	GA	1208.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.896;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=37.77;ReadPosRankSum=1.357;SOR=1.493;set=HC	GT:AD:AF:DP	1/1:1,31:0.97:32
chr1	171303925	rs3820170	C	T	10615.77	.	AC=2;AF=1.00;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	1/1:2,392:0.99:394
chr1	171311003	rs1042772	A	C	10042.77	.	AC=2;AF=1.00;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	1/1:0,362:1.00:362
chr1	171491264	rs3736679	T	A	771.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.359;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=1.196;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.65;ReadPosRankSum=1.745;SOR=0.433;set=HC	GT:AD:AF:DP	0/1:26,35:0.57:61
chr1	171496895	rs10753126	A	G	684.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:43,32:0.43:75
chr1	171509327	rs760644	G	A	5338.77	.	AC=1;AF=0.500;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	0/1:198,238:0.55:436
chr1	171511039	rs1687064	C	G	4700.77	.	AC=1;AF=0.500;AN=2;DB;DP=549;set=Intersection	GT:AD:AF:DP	0/1:303,235:0.44:538
chr1	171511442	rs2272810	A	G	792.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:44,35:0.44:79
chr1	171514731	rs235468	C	G	4335.77	.	AC=1;AF=0.500;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	0/1:214,208:0.49:422
chr1	171514875	rs144856960	T	TATTC	1508.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.944;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=3.069;MLEAC=1;MLEAF=0.500;MQ=61.93;MQRankSum=3.184;QD=22.52;ReadPosRankSum=0.110;SOR=1.342;set=HC	GT:AD:AF:DP	0/1:26,41:0.61:67
chr1	171519487	rs235470	A	C	532.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:21,26:0.55:47
chr1	171526570	rs1687057	G	A	20100.77	.	AC=1;AF=0.500;AN=2;DB;DP=1967;set=Intersection	GT:AD:AF:DP	0/1:995,954:0.49:1949
chr1	171527322	rs235482	A	G	1174.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:52,49:0.49:101
chr1	171546833	rs6685179	C	A	2849.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:131,132:0.50:263
chr1	171548617	rs3817772	G	A	4173.77	.	AC=1;AF=0.500;AN=2;DB;DP=474;set=Intersection	GT:AD:AF:DP	0/1:267,202:0.43:469
chr1	171548868	rs235489	T	C	1297.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:44,50:0.53:94
chr1	171556165	rs235501	G	C	3729.77	.	AC=1;AF=0.500;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	0/1:228,187:0.45:415
chr1	171558447	rs11284338	GT	G	205.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.618;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=0.000;QD=3.12;ReadPosRankSum=0.856;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:37,29:0.44:66
chr1	171558516	rs235503	C	T	3267.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;MQ=60.03;set=Intersection	GT:AD:AF:DP	0/1:161,159:0.50:320
chr1	171605539	rs61730974	A	G	5195.77	.	AC=1;AF=0.500;AN=2;DB;DP=562;set=Intersection	GT:AD:AF:DP	0/1:296,258:0.47:554
chr1	171605922	rs79255460	G	A	2659.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:136,115:0.46:251
chr1	171607569	rs144871239	CAG	C	81.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.918;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=2.488;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.27;ReadPosRankSum=-0.238;SOR=1.284;set=HC	GT:AD:AF:DP	0/1:30,6:0.17:36
chr1	171607702	rs2032555	C	T	4508.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr1	171679958	rs10913530	G	A	1572.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:82,75:0.48:157
chr1	171707272	rs10753179	T	C	346.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:19,16:0.46:35
chr1	171751051	rs2294719	A	G	7228.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr1	171751236	rs2294720	T	C	4151.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr1	171753039	rs2232816	A	G	7540.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr1	171754865	rs732304	A	G	652.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	171755170	rs2232818	G	A	8424.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr1	171763522	rs909958	C	A	6537.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:1,241:1.00:242
chr1	171765591	rs2232826	G	A	9172.77	.	AC=2;AF=1.00;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	1/1:1,333:1.00:334
chr1	172001701	.	A	G	1259	.	AC=1;AF=0.500;AN=2;BRF=0.38;FR=0.5000;HP=2;HapScore=2;MGOF=35;MMLQ=27;MQ=55.88;NF=3;NR=59;PP=1259;QD=20.8672776217;SC=TTTTTGTTATATGGAAGAGAA;SbPval=0.58;Source=Platypus;TC=122;TCF=6;TCR=116;TR=62;WE=172001709;WS=172001685;set=Platypus	GT:AD:AF:DP	0/1:60,62:0.51:122
chr1	172038079	rs12760234	T	C	1481.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:62,68:0.52:130
chr1	172222629	rs145316116	TCTCTCCTCTCCTCTC	T	1714.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.951;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=47.609;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=1.116;QD=24.50;ReadPosRankSum=1.044;SOR=3.126;set=HC	GT:AD:AF:DP	0/1:26,44:0.63:70
chr1	172277845	rs200321314	AT	A	83.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.553;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=1.034;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.90;ReadPosRankSum=1.314;SOR=0.476;set=HC	GT:AD:AF:DP	0/1:71,22:0.24:93
chr1	172277925	rs34870740	C	T	1602.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:77,76:0.50:153
chr1	172308238	rs6697844	C	T	1286.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:84,68:0.45:152
chr1	172356437	rs6688654	A	G	4955.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr1	172377024	rs12408776	G	A	4793.77	.	AC=1;AF=0.500;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	0/1:187,222:0.54:409
chr1	172410967	rs1063412	G	A	8222.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chr1	172411496	rs2230471	A	G	2272.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;MQ=59.99;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr1	172417441	.	C	G	998.77	.	AC=1;AF=0.500;AN=2;DP=91;set=Intersection	GT:AD:AF:DP	0/1:41,48:0.54:89
chr1	172417781	rs2157451	A	G	591.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	172425529	rs2285170	C	G	20174.77	.	AC=2;AF=1.00;AN=2;DB;DP=783;set=Intersection	GT:AD:AF:DP	1/1:0,776:1.00:776
chr1	172425640	rs78728841	G	A	2803.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:135,119:0.47:254
chr1	172431210	rs4916261	G	A	1018.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	172431440	.	A	C	2336.77	.	AC=1;AF=0.500;AN=2;DP=267;set=Intersection	GT:AD:AF:DP	0/1:152,114:0.43:266
chr1	172434309	rs9425328	G	A	2336.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:1,79:0.99:80
chr1	172434375	rs2901655	G	A	8272.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr1	172434812	rs2901656	C	T	12660.77	.	AC=2;AF=1.00;AN=2;DB;DP=470;set=Intersection	GT:AD:AF:DP	1/1:1,462:1.00:463
chr1	172437592	rs1129942	G	A	5830.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr1	172501643	rs2239816	T	C	4402.77	.	AC=1;AF=0.500;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	0/1:201,207:0.51:408
chr1	172502340	rs2285143	T	C	878.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:38,42:0.53:80
chr1	172502479	rs2285144	T	C	1387.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:96,65:0.40:161
chr1	172502727	rs55696309	TA	T	2589.73	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:63,85:0.57:148
chr1	172522602	rs1159378	G	A	191.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chr1	172547465	rs2285664	A	G	3256.77	.	AC=1;AF=0.500;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	0/1:197,159:0.45:356
chr1	172554867	rs10752995	T	A	484.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:12,19:0.61:31
chr1	172577864	rs372623434	CT	C	145.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.238;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.842;QD=1.26;ReadPosRankSum=0.298;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:85,31:0.27:116
chr1	172633350	rs5030772	A	G	150.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr1	172634734	rs2639653	T	C	2950.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr1	173157541	rs17346501	T	C	104.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:8,6:0.43:14
chr1	173472551	rs10912625	T	C	1207.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:53,59:0.53:112
chr1	173474262	rs6687872	G	A	869.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:41,35:0.46:76
chr1	173474429	rs12026637	T	C	6096.77	.	AC=1;AF=0.500;AN=2;DB;DP=630;set=Intersection	GT:AD:AF:DP	0/1:325,294:0.47:619
chr1	173478648	rs10737303	T	C	419.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:38,20:0.34:58
chr1	173490407	rs5778771	TA	T	1002.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.574;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=2.307;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=2.194;QD=5.54;ReadPosRankSum=-0.827;SOR=0.478;set=HC	GT:AD:AF:DP	0/1:70,111:0.61:181
chr1	173490616	rs146332693	CTATATA	C	627.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.109;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=9.887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.31;ReadPosRankSum=1.814;SOR=3.312;set=HC	GT:AD:AF:DP	0/1:23,18:0.44:41
chr1	173493312	rs10912633	A	G	303.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:8,12:0.60:20
chr1	173503864	rs10798285	A	G	149.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr1	173516871	rs16846206	G	C	4911.77	.	AC=1;AF=0.500;AN=2;DB;DP=500;set=Intersection	GT:AD:AF:DP	0/1:252,243:0.49:495
chr1	173516903	rs10494490	A	G	4289.77	.	AC=1;AF=0.500;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	0/1:207,214:0.51:421
chr1	173552529	rs7541082	A	G	130.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:7,7:0.50:14
chr1	173552783	rs12032386	G	A	1109.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:55,55:0.50:110
chr1	173556699	rs301698	G	T	560.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	173569176	rs17350830	T	C	468.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:18,21:0.54:39
chr1	173626609	.	GA	G	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.768;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.16;ReadPosRankSum=1.157;SOR=0.467;set=HC	GT:AD:AF:DP	0/1:26,9:0.26:35
chr1	173794587	rs140240732	CATTATT	C	242.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.923;ClippingRankSum=-0.000;DB;DP=27;ExcessHet=3.0103;FS=3.802;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=20.23;ReadPosRankSum=-0.550;SOR=2.419;set=HC	GT:AD:AF:DP	0/1:5,7:0.58:12
chr1	173795803	rs60788171	C	CT	802.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.898;ClippingRankSum=0.000;DB;DP=322;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=2.200;QD=2.71;ReadPosRankSum=1.052;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:214,82:0.28:296
chr1	173839907	rs36119794	C	T	4392.77	.	AC=1;AF=0.500;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	0/1:169,198:0.54:367
chr1	173921301	rs199536039	C	CA	160.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.187;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=0.983;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.69;ReadPosRankSum=-0.202;SOR=0.490;set=HC	GT:AD:AF:DP	0/1:72,23:0.24:95
chr1	173941617	rs11579488	T	C	4842.77	.	AC=1;AF=0.500;AN=2;DB;DP=479;set=Intersection	GT:AD:AF:DP	0/1:244,222:0.48:466
chr1	173961839	rs12754931	G	C	298.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:74,23:0.24:97
chr1	174417231	rs7516240	G	A	4209.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr1	174652719	.	T	C	4799.77	.	AC=1;AF=0.500;AN=2;DP=485;set=Intersection	GT:AD:AF:DP	0/1:238,242:0.50:480
chr1	174927388	rs10798329	G	C	1354.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	174945171	rs142125254	CTGTATGACTGTGA	C	8781.73	.	AC=1;AF=0.500;AN=2;DB;DP=557;MQ=60.06;set=Intersection	GT:AD:AF:DP	0/1:295,232:0.44:527
chr1	174948082	.	A	AT	103.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.178;ClippingRankSum=0.000;DP=102;ExcessHet=3.0103;FS=2.354;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=2.420;QD=1.31;ReadPosRankSum=-0.321;SOR=1.035;set=HC	GT:AD:AF:DP	0/1:62,17:0.22:79
chr1	174969271	rs1046439	C	T	4452.77	.	AC=1;AF=0.500;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	0/1:228,208:0.48:436
chr1	175046488	rs2072033	G	A	1077.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:67,51:0.43:118
chr1	175046789	rs2072032	A	G	5559.77	.	AC=1;AF=0.500;AN=2;DB;DP=562;set=Intersection	GT:AD:AF:DP	0/1:283,273:0.49:556
chr1	175053098	rs11577778	T	C	6488.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.803;ClippingRankSum=0.000;DB;DP=362;ExcessHet=3.0103;FS=2.368;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.38;ReadPosRankSum=-0.554;SOR=0.825;set=HC	GT:AD:AF:DP	0/1:182,171:0.48:353
chr1	175053101	rs2072030	A	T	6407.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.413;ClippingRankSum=0.000;DB;DP=350;ExcessHet=3.0103;FS=1.860;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.79;ReadPosRankSum=-0.526;SOR=0.803;set=HC	GT:AD:AF:DP	0/1:176,165:0.48:341
chr1	175054548	rs1573758	C	T	1697.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:133,87:0.40:220
chr1	175086461	rs6690229	A	G	880.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:27,36:0.57:63
chr1	175087606	rs10912888	T	C	1968.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:105,92:0.47:197
chr1	175087677	rs6656284	G	A	4534.77	.	AC=1;AF=0.500;AN=2;DB;DP=468;set=Intersection	GT:AD:AF:DP	0/1:244,223:0.48:467
chr1	175087683	rs149150350	A	AT	3456.73	.	AC=1;AF=0.500;AN=2;DB;DP=489;set=Intersection	GT:AD:AF:DP	0/1:244,217:0.47:461
chr1	175087729	rs6696455	T	C	6020.77	.	AC=1;AF=0.500;AN=2;DB;DP=591;set=Intersection	GT:AD:AF:DP	0/1:298,291:0.49:589
chr1	175092674	rs2285215	C	T	9331.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr1	175092707	rs10798333	C	T	3815.77	.	AC=1;AF=0.500;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	0/1:171,178:0.51:349
chr1	175092840	rs2072041	T	C	9803.77	.	AC=2;AF=1.00;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	1/1:0,363:1.00:363
chr1	175095936	rs7515770	C	T	246.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:20,12:0.38:32
chr1	175096333	rs2072040	A	G	1442.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:43,60:0.58:103
chr1	175097331	rs10912891	G	A	2194.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:116,111:0.49:227
chr1	175097349	rs7547567	C	T	5218.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr1	175104790	rs4651323	T	C	182.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.985;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=2.093;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.95;ReadPosRankSum=-0.255;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:13,10:0.43:23
chr1	175104796	rs4651324	G	T	934.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	175105880	rs2072037	G	A	2076.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr1	175105942	rs4650703	G	A	5053.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr1	175113578	rs10912897	T	C	5063.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr1	175116046	rs11450833	C	CT	1355.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.266;ClippingRankSum=0.000;DB;DP=253;ExcessHet=3.0103;FS=2.956;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.000;QD=6.34;ReadPosRankSum=-0.587;SOR=0.968;set=HC	GT:AD:AF:DP	0/1:105,109:0.51:214
chr1	175116252	rs4651335	C	G	3644.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr1	175129945	rs60195884	TC	T	1200.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.007;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=1.363;QD=18.19;ReadPosRankSum=-0.444;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:31,35:0.53:66
chr1	175129946	rs2072035	C	T	625.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.931;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=-1.320;QD=9.48;ReadPosRankSum=0.469;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:35,31:0.47:66
chr1	175129947	.	TTCTTCTTG	T	1191.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.622;ClippingRankSum=0.000;DP=73;ExcessHet=3.0103;FS=0.953;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=1.444;QD=16.55;ReadPosRankSum=-0.824;SOR=0.955;set=HC	GT:AD:AF:DP	0/1:36,36:0.50:72
chr1	175130204	rs1057239	G	A	403.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:13,17:0.57:30
chr1	175292672	rs34842046	A	T	728.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:26,31:0.54:57
chr1	175293424	rs2213635	T	C	722.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	175299301	rs2027867	T	C	10215.77	.	AC=2;AF=1.00;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	1/1:0,366:1.00:366
chr1	175324518	rs55715761	GCA	G	4705.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr1	175324521	rs55973835	A	T	4714.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr1	175324651	rs2228359	A	G	10573.77	.	AC=2;AF=1.00;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	1/1:1,403:1.00:404
chr1	175335412	rs1385540	A	C	1502.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	175336530	rs6697701	T	C	3909.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr1	175336619	rs6697801	T	C	665.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	175348723	rs859427	C	T	3332.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr1	175355128	rs859436	C	G	3276.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.247;ClippingRankSum=0.000;DB;DP=256;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.00;ReadPosRankSum=1.084;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:113,139:0.55:252
chr1	175355391	rs859437	A	G	6529.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr1	175360690	rs859444	C	T	1493.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	175362736	rs3752517	G	A	1372.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:2,45:0.96:47
chr1	175365663	rs859446	G	A	6116.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr1	175375334	rs859400	C	T	1882.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:90,81:0.47:171
chr1	175375469	rs2239819	C	A	6993.77	.	AC=1;AF=0.500;AN=2;DB;DP=655;set=Intersection	GT:AD:AF:DP	0/1:335,318:0.49:653
chr1	175375635	rs2239818	G	A	6282.77	.	AC=1;AF=0.500;AN=2;DB;DP=607;set=Intersection	GT:AD:AF:DP	0/1:313,292:0.48:605
chr1	175375683	rs859399	T	C	15790.77	.	AC=2;AF=1.00;AN=2;DB;DP=587;set=Intersection	GT:AD:AF:DP	1/1:1,580:1.00:581
chr1	175375802	rs859398	T	C	21212.77	.	AC=2;AF=1.00;AN=2;DB;DP=813;set=Intersection	GT:AD:AF:DP	1/1:1,803:1.00:804
chr1	175911247	rs12123116	G	A	1845.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.195;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=4.377;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.79;ReadPosRankSum=2.038;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:33,48:0.59:81
chr1	175911256	rs139905798	C	G	1864.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.750;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=3.094;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.60;ReadPosRankSum=-0.307;SOR=0.403;set=HC	GT:AD:AF:DP	0/1:31,48:0.61:79
chr1	175916267	rs6674353	T	C	3378.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr1	175937540	rs4534339	C	T	6864.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr1	175951347	rs10798430	T	A	3894.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr1	176012466	.	G	GA	178.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.008;ClippingRankSum=0.000;DP=213;ExcessHet=3.0103;FS=1.718;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.98;ReadPosRankSum=-0.167;SOR=0.491;set=HC	GT:AD:AF:DP	0/1:148,35:0.19:183
chr1	176012495	rs72713273	G	A	1851.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:41,78:0.66:119
chr1	176012807	rs4233165	G	A	1251.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	176015573	rs10494497	T	G	481.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:13,20:0.61:33
chr1	176050430	rs56720201	GA	G	255.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.274;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.587;QD=1.97;ReadPosRankSum=-0.779;SOR=0.623;set=HC	GT:AD:AF:DP	0/1:87,43:0.33:130
chr1	176102808	rs1330863	T	C	289.78	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:1,10:0.91:11
chr1	176103053	rs34010407	TAC	T	1630.73	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:46,45:0.49:91
chr1	176103982	rs78569232	C	T	1064.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:42,48:0.53:90
chr1	176105710	rs373330844	CA	C	144.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.617;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=7.702;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.19;ReadPosRankSum=-1.138;SOR=1.155;set=HC	GT:AD:AF:DP	0/1:47,19:0.29:66
chr1	176118219	rs3748618	G	A	985.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:31,44:0.59:75
chr1	176153658	rs791744	T	C	1276.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr1	176665102	.	ATG	A	165	.	AC=1;AF=0.500;AN=2;BRF=0.34;FR=0.5000;HP=2;HapScore=2;MGOF=14;MMLQ=24;MQ=60.0;NF=1;NR=3;PP=165;QD=42.0;SC=ATGTATGTGTATGTGTGTGTG;SbPval=0.34;Source=Platypus;TC=20;TCF=2;TCR=18;TR=4;WE=176665111;WS=176665092;set=Platypus	GT:AD:AF:DP	0/1:16,4:0.20:20
chr1	176681165	rs66731142	ATG	A	193.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.227;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=21.475;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.39;ReadPosRankSum=-0.177;SOR=0.024;set=HC	GT:AD:AF:DP	0/1:64,17:0.21:81
chr1	176734756	rs3737759	C	T	1723.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:86,86:0.50:172
chr1	176833497	rs12118933	G	C	2950.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:147,143:0.49:290
chr1	176845528	rs2076341	C	T	1201.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:63,51:0.45:114
chr1	176857347	rs2072935	A	G	500.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:45,26:0.37:71
chr1	176863836	rs2281180	G	C	4584.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.449;ClippingRankSum=0.000;DB;DP=272;ExcessHet=3.0103;FS=1.478;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.92;ReadPosRankSum=0.341;SOR=0.590;set=HC	GT:AD:AF:DP	0/1:148,123:0.45:271
chr1	176863842	rs6680908	C	T	4645.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.938;ClippingRankSum=0.000;DB;DP=279;ExcessHet=3.0103;FS=0.441;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.71;ReadPosRankSum=-0.077;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:150,128:0.46:278
chr1	176863867	rs2228956	T	C	2856.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:176,143:0.45:319
chr1	176905200	rs2076071	A	G	1366.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:81,69:0.46:150
chr1	176913215	rs34115079	A	AT	79.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.089;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.42;ReadPosRankSum=-1.346;SOR=0.584;set=HC	GT:AD:AF:DP	0/1:23,10:0.30:33
chr1	176915022	rs2076070	A	G	3356.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:148,164:0.53:312
chr1	176918504	rs2076073	A	G	1210.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:56,54:0.49:110
chr1	176934389	rs12565733	T	A	1472.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:97,77:0.44:174
chr1	176992553	rs172917	A	G	3755.77	.	AC=1;AF=0.500;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	0/1:219,191:0.47:410
chr1	176998930	rs56297461	C	T	2437.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:140,117:0.46:257
chr1	176999917	rs12568439	G	A	2787.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:159,139:0.47:298
chr1	177001896	rs2076069	C	G	8585.77	.	AC=1;AF=0.500;AN=2;DB;DP=741;set=Intersection	GT:AD:AF:DP	0/1:341,394:0.54:735
chr1	177198998	rs3176441	T	C	1018.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:41,46:0.53:87
chr1	177199323	rs3176442	C	T	2907.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:95,132:0.58:227
chr1	177898799	rs623479	C	T	625.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	177899121	rs545608	G	C	548.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:35,29:0.45:64
chr1	177901619	rs7531399	G	A	4968.77	.	AC=1;AF=0.500;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	0/1:177,232:0.57:409
chr1	177901655	rs3748792	G	A	12793.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.360;ClippingRankSum=0.000;DB;DP=661;ExcessHet=3.0103;FS=1.742;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.38;ReadPosRankSum=3.550;SOR=0.825;set=HC	GT:AD:AF:DP	0/1:331,329:0.50:660
chr1	177901658	rs7554597	C	T	12888.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.434;ClippingRankSum=0.000;DB;DP=686;ExcessHet=3.0103;FS=1.112;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.82;ReadPosRankSum=3.377;SOR=0.803;set=HC	GT:AD:AF:DP	0/1:345,340:0.50:685
chr1	177901713	rs522367	T	C	22624.77	.	AC=2;AF=1.00;AN=2;DB;DP=846;set=Intersection	GT:AD:AF:DP	1/1:0,842:1.00:842
chr1	177901741	rs684227	A	G	17779.77	.	AC=2;AF=1.00;AN=2;DB;DP=682;set=Intersection	GT:AD:AF:DP	1/1:0,676:1.00:676
chr1	177902387	rs61745560	C	A	4623.77	.	AC=1;AF=0.500;AN=2;DB;DP=505;set=Intersection	GT:AD:AF:DP	0/1:279,221:0.44:500
chr1	177902482	rs3813648	G	A	7128.77	.	AC=1;AF=0.500;AN=2;DB;DP=675;set=Intersection	GT:AD:AF:DP	0/1:321,346:0.52:667
chr1	177902725	rs3813649	C	T	4193.77	.	AC=1;AF=0.500;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	0/1:193,197:0.51:390
chr1	177902753	rs591120	G	C	4914.77	.	AC=1;AF=0.500;AN=2;DB;DP=444;set=Intersection	GT:AD:AF:DP	0/1:210,224:0.52:434
chr1	177905469	rs7522194	C	A	2808.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:137,132:0.49:269
chr1	177906292	rs61816275	C	T	1280.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:41,54:0.57:95
chr1	177913980	rs532842	T	C	1712.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	177915474	rs842192	A	C	5631.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr1	177915698	rs75650660	G	A	340.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:22,14:0.39:36
chr1	177916890	.	A	AAGGGACAGGGAGGGGAGGTGAGGGG	1308.73	.	AC=2;AF=1.00;AN=2;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	177917479	rs6695715	G	A	3959.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:170,181:0.52:351
chr1	177929379	rs16828594	C	T	1916.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:88,85:0.49:173
chr1	177929501	rs34246968	C	G	5290.77	.	AC=1;AF=0.500;AN=2;DB;DP=504;set=Intersection	GT:AD:AF:DP	0/1:257,244:0.49:501
chr1	177929554	rs10913472	C	T	4662.77	.	AC=1;AF=0.500;AN=2;DB;DP=482;set=Intersection	GT:AD:AF:DP	0/1:249,232:0.48:481
chr1	177929940	rs7413442	G	A	2458.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:101,115:0.53:216
chr1	177929987	rs12040910	T	C	9931.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	1/1:0,375:1.00:375
chr1	177930642	rs945640	G	A	1750.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr1	177930894	rs945641	C	T	1727.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr1	177933443	rs3813651	G	A	10458.77	.	AC=2;AF=1.00;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	1/1:2,385:0.99:387
chr1	177933505	rs3813652	C	T	2031.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:89,93:0.51:182
chr1	177934351	rs72703030	G	T	2827.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:174,136:0.44:310
chr1	177935050	rs1889981	T	A	1973.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:109,94:0.46:203
chr1	177935203	rs954502	A	G	4945.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:1,181:0.99:182
chr1	177935275	rs1415085	A	G	1549.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr1	178062359	rs964993	G	A	5668.77	.	AC=1;AF=0.500;AN=2;DB;DP=676;set=Intersection	GT:AD:AF:DP	0/1:381,288:0.43:669
chr1	178408795	rs10913550	A	G	957.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:29,38:0.57:67
chr1	178421901	rs12691482	T	G	1805.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:56,80:0.59:136
chr1	178433368	rs12039605	C	T	701.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:57,37:0.39:94
chr1	178442190	rs10913557	C	T	4885.77	.	AC=1;AF=0.500;AN=2;DB;DP=527;set=Intersection	GT:AD:AF:DP	0/1:296,225:0.43:521
chr1	178484834	rs10798611	A	G	1117.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:51,56:0.52:107
chr1	178491680	rs3813637	C	G	1688.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:87,81:0.48:168
chr1	178492447	rs7527160	T	A	402.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:58,27:0.32:85
chr1	178494428	rs6664493	C	T	1104.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:56,46:0.45:102
chr1	178499068	rs6675811	T	A	643.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:22,27:0.55:49
chr1	178514165	rs12141152	C	T	2652.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:129,122:0.49:251
chr1	178514203	rs12044868	C	A	1996.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:79,87:0.52:166
chr1	178514560	rs34632529	A	AT	20777.73	.	AC=2;AF=1.00;AN=2;DB;DP=807;set=Intersection	GT:AD:AF:DP	1/1:4,751:0.99:755
chr1	178515135	rs4650992	A	T	3165.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr1	178646752	rs2773075	A	C	551.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	178745798	rs11323887	CT	C	178.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.457;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=4.674;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.43;ReadPosRankSum=2.149;SOR=0.309;set=HC	GT:AD:AF:DP	0/1:93,32:0.26:125
chr1	178776985	rs6690324	G	A	546.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	179080115	rs34446538	CT	C	231.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.750;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.950;QD=4.29;ReadPosRankSum=-0.016;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:25,29:0.54:54
chr1	179086419	rs56346584	T	TA	125.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.091;ClippingRankSum=0.000;DB;DP=358;ExcessHet=3.0103;FS=0.593;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=2.272;QD=0.38;ReadPosRankSum=-0.084;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:284,50:0.15:334
chr1	179095895	.	T	TA	179.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.554;ClippingRankSum=0.000;DP=143;ExcessHet=3.0103;FS=7.480;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.63;ReadPosRankSum=1.919;SOR=0.136;set=HC	GT:AD:AF:DP	0/1:85,25:0.23:110
chr1	179271948	.	AT	A	147.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.880;ClippingRankSum=0.000;DP=254;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.881;QD=0.69;ReadPosRankSum=0.762;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:172,41:0.19:213
chr1	179292442	rs2902277	G	A	1369.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	179304892	rs1034269	T	C	2010.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr1	179308803	rs3753524	G	A	3932.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr1	179312235	rs10913728	G	A	3726.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr1	179312525	rs12691483	G	A	679.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:2,17:0.89:19
chr1	179312526	rs13306726	GT	G	670.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.682;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=4.135;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=35.30;ReadPosRankSum=-1.109;SOR=2.712;set=HC	GT:AD:AF:DP	0/1:2,17:0.89:19
chr1	179312559	rs13306728	A	G	916.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:2,38:0.95:40
chr1	179312752	rs10753191	C	T	2541.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr1	179317895	rs200924427	ATGTGTGTGTGTGTGTGTGTGTGTGTG	A,ATG	2261.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=41.12;SOR=2.712;set=HC	GT:AD:AF:DP	1/2:0,16,39:0.29,0.71:55
chr1	179319541	rs3753526	C	G	21903.77	.	AC=2;AF=1.00;AN=2;DB;DP=837;set=Intersection	GT:AD:AF:DP	1/1:2,822:1.00:824
chr1	179319580	rs3753527	T	C	16463.77	.	AC=2;AF=1.00;AN=2;DB;DP=595;set=Intersection	GT:AD:AF:DP	1/1:2,586:1.00:588
chr1	179320578	rs13306731	A	G	13751.77	.	AC=2;AF=1.00;AN=2;DB;DP=544;set=Intersection	GT:AD:AF:DP	1/1:5,530:0.99:535
chr1	179335499	rs35129223	C	CT	495.14	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.767;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.00;ReadPosRankSum=0.409;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:9,36:0.80:45
chr1	179339262	rs16854009	C	G	3880.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr1	179347832	rs10798674	T	C	11977.77	.	AC=2;AF=1.00;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	1/1:0,451:1.00:451
chr1	179351606	rs4625243	G	C	823.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	179352736	rs4077551	T	C	7984.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:2,288:0.99:290
chr1	179354304	rs7541905	A	G	1273.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	179364372	rs12405133	G	C	3385.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr1	179380519	rs10798676	G	T	1061.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	179398563	rs4652382	C	G	337.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	179401379	.	C	CT	48.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.000;ClippingRankSum=0.000;DP=93;ExcessHet=3.0103;FS=1.244;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=2.092;QD=0.53;ReadPosRankSum=1.043;SOR=0.466;set=HC	GT:AD:AF:DP	0/1:76,16:0.17:92
chr1	179401503	rs12097041	G	A	12297.77	.	AC=2;AF=1.00;AN=2;DB;DP=475;set=Intersection	GT:AD:AF:DP	1/1:2,469:1.00:471
chr1	179401564	rs10706073	CT	C	4048.73	.	AC=1;AF=0.500;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	0/1:58,279:0.83:337
chr1	179402037	rs199738366	C	CA	173.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.360;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.966;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.74;ReadPosRankSum=0.540;SOR=0.498;set=HC	GT:AD:AF:DP	0/1:76,24:0.24:100
chr1	179437827	rs7514278	G	A	362.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	179452194	rs6668035	C	T	1945.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr1	179452275	rs10494520	G	A	5944.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr1	179452522	rs12407885	G	C	2182.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr1	179462149	rs7549194	A	G	2283.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr1	179494665	rs4620484	C	T	712.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	179497359	rs6698201	T	C	2630.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr1	179544898	rs1079292	T	C	10807.77	.	AC=2;AF=1.00;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	1/1:0,388:1.00:388
chr1	179561645	rs4652418	A	C	1089.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	179561683	rs4652419	A	T	1408.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:2,63:0.97:65
chr1	179599327	rs35061972	T	C	351.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.45;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	179604864	rs4628468	C	T	14783.77	.	AC=2;AF=1.00;AN=2;DB;DP=555;MQ=60.02;set=Intersection	GT:AD:AF:DP	1/1:0,551:1.00:551
chr1	179609589	rs16854429	G	T	14000.77	.	AC=2;AF=1.00;AN=2;DB;DP=528;set=Intersection	GT:AD:AF:DP	1/1:1,522:1.00:523
chr1	179815234	.	C	T	3278.77	.	AC=1;AF=0.500;AN=2;DP=359;set=Intersection	GT:AD:AF:DP	0/1:190,164:0.46:354
chr1	179852074	rs1281378	T	C	11232.77	.	AC=2;AF=1.00;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	1/1:0,424:1.00:424
chr1	179852552	rs605807	T	G	2698.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:1,85:0.99:86
chr1	179858333	rs1300068	C	T	477.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	179858444	rs2245425	G	A	2588.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr1	179876988	rs609521	C	G	3883.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.38;SOR=1.003;set=HC	GT:AD:AF:DP	1/1:0,153:1.00:153
chr1	179877048	rs373127770	C	CTT	302.94	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.557;ClippingRankSum=-0.000;DB;DP=54;ExcessHet=3.0103;FS=3.310;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=16.83;ReadPosRankSum=-0.728;SOR=0.105;set=HC	GT:AD:AF:DP	1/1:2,16:0.89:18
chr1	179887125	rs627897	G	A	18284.77	.	AC=2;AF=1.00;AN=2;DB;DP=667;set=Intersection	GT:AD:AF:DP	1/1:0,661:1.00:661
chr1	179982938	rs17371166	G	T	2822.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:96,128:0.57:224
chr1	179983665	rs2501607	G	A	6077.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr1	179989742	rs2477120	G	C	10804.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	1/1:0,379:1.00:379
chr1	179992076	rs2477117	A	G	1561.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr1	179993793	rs4622030	T	C	733.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	180010702	rs4652461	T	C	1578.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	180022343	rs9425854	T	G	6058.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr1	180059736	rs67852047	GACATACCT	G	2733.73	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr1	180059811	rs10798729	A	C	7143.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr1	180080115	rs3767202	T	G	2683.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr1	180144291	rs71118443	C	CA	982.50	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.942;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.45;ReadPosRankSum=-0.877;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:24,70:0.74:94
chr1	180145088	rs2298206	A	G	7996.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr1	180155376	rs2298207	C	G	2457.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr1	180155382	rs3216058	AG	A	2415.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr1	180159797	rs3215795	TC	T	1567.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	180167652	.	T	C	1233.77	.	AC=1;AF=0.500;AN=2;DP=132;set=Intersection	GT:AD:AF:DP	0/1:69,61:0.47:130
chr1	180180669	rs164980	A	G	2880.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:2,114:0.98:116
chr1	180180756	rs355610	C	T	754.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:37,38:0.51:75
chr1	180217656	rs35619850	G	A	1114.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:51,46:0.47:97
chr1	180241155	rs3806302	G	T	1702.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr1	180257692	rs2254465	A	C	1528.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr1	180283659	rs2764433	T	C	912.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	180471040	.	C	CA	216.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;ClippingRankSum=0.000;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.64;ReadPosRankSum=0.601;SOR=0.769;set=HC	GT:AD:AF:DP	0/1:56,26:0.32:82
chr1	180471054	rs12723183	C	A	1504.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.001;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=1.170;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.72;ReadPosRankSum=0.446;SOR=1.007;set=HC	GT:AD:AF:DP	0/1:19,71:0.79:90
chr1	180601190	rs111298273	G	T	578.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:40,25:0.38:65
chr1	180757117	rs34984251	G	GT	987.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	180849494	rs10914123	T	C	1387.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr1	180885430	rs10732273	T	C	20267.77	.	AC=2;AF=1.00;AN=2;DB;DP=755;set=Intersection	GT:AD:AF:DP	1/1:0,749:1.00:749
chr1	180886216	rs77695365	C	T	2899.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:117,129:0.52:246
chr1	180897521	rs7544551	C	T	21693.77	.	AC=2;AF=1.00;AN=2;DB;DP=808;set=Intersection	GT:AD:AF:DP	1/1:0,802:1.00:802
chr1	180897569	rs3747958	C	T	7884.77	.	AC=1;AF=0.500;AN=2;DB;DP=778;set=Intersection	GT:AD:AF:DP	0/1:385,385:0.50:770
chr1	180897792	rs35197779	ATGC	A	2166.73	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	180905352	rs3795505	C	T	11052.77	.	AC=1;AF=0.500;AN=2;DB;DP=1194;set=Intersection	GT:AD:AF:DP	0/1:636,536:0.46:1172
chr1	180905448	rs3795504	G	T	12292.77	.	AC=1;AF=0.500;AN=2;DB;DP=1315;set=Intersection	GT:AD:AF:DP	0/1:697,597:0.46:1294
chr1	180905694	rs3795503	C	T	5981.77	.	AC=1;AF=0.500;AN=2;DB;DP=675;set=Intersection	GT:AD:AF:DP	0/1:353,305:0.46:658
chr1	180913597	rs2331995	A	G	16710.77	.	AC=2;AF=1.00;AN=2;DB;DP=624;set=Intersection	GT:AD:AF:DP	1/1:0,618:1.00:618
chr1	180913701	rs182324253	C	T	3795.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:176,175:0.50:351
chr1	180933498	rs4652543	C	T	1682.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:51,64:0.56:115
chr1	180953853	rs3747957	A	G	2940.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:155,149:0.49:304
chr1	180962282	rs1411478	A	G	100.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr1	181003340	rs61482628	A	AG	886.73	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:39,31:0.44:70
chr1	181018180	rs2236411	C	G	5010.77	.	AC=1;AF=0.500;AN=2;DB;DP=489;set=Intersection	GT:AD:AF:DP	0/1:237,247:0.51:484
chr1	181022895	rs2275469	C	A	855.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:37,36:0.49:73
chr1	181024404	rs3747956	G	A	6071.77	.	AC=1;AF=0.500;AN=2;DB;DP=650;set=Intersection	GT:AD:AF:DP	0/1:338,303:0.47:641
chr1	181058540	rs3747954	G	A	689.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:32,32:0.50:64
chr1	181058643	rs1361365	A	G	883.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	181058891	rs3747951	C	T	3327.77	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:184,161:0.47:345
chr1	181680082	rs17743547	G	A	2380.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:160,120:0.43:280
chr1	181684605	rs12407563	A	G	4769.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr1	181686216	rs7540850	T	C	5619.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.02;SOR=1.234;set=HC	GT:AD:AF:DP	1/1:0,208:1.00:208
chr1	181714466	rs375841404	AT	A	220.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.718;ClippingRankSum=0.000;DB;DP=332;ExcessHet=3.0103;FS=0.587;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=1.887;QD=0.79;ReadPosRankSum=0.293;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:219,60:0.22:279
chr1	181719679	rs704332	C	T	3743.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:168,169:0.50:337
chr1	181725110	rs4652678	T	C	1784.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:116,90:0.44:206
chr1	181726413	rs704330	G	A	404.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	181727030	rs12564606	A	T	4108.77	.	AC=1;AF=0.500;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	0/1:164,185:0.53:349
chr1	181727273	rs704329	G	A	1652.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:71,73:0.51:144
chr1	181731667	rs149636359	T	TC	2343.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.286;ClippingRankSum=0.000;DB;DP=281;ExcessHet=3.0103;FS=1.083;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.52;ReadPosRankSum=1.560;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:151,124:0.45:275
chr1	181732695	rs72735265	A	G	1073.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:50,52:0.51:102
chr1	181741301	rs199930	C	T	6124.77	.	AC=1;AF=0.500;AN=2;DB;DP=638;set=Intersection	GT:AD:AF:DP	0/1:336,295:0.47:631
chr1	181745580	rs199932	G	A	756.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:44,35:0.44:79
chr1	181750469	rs704328	G	T	716.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:44,32:0.42:76
chr1	181752714	rs74489861	C	T	486.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:22,14:0.39:36
chr1	181752735	rs74342664	C	T	606.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:34,21:0.38:55
chr1	181752769	rs144664284	A	AT	1072.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.203;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.95;ReadPosRankSum=0.849;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:27,71:0.72:98
chr1	181752923	rs36163765	AAGCTT	A	7036.73	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr1	181759443	rs34600959	T	TA	548.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.527;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=7.302;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.55;ReadPosRankSum=2.231;SOR=2.428;set=HC	GT:AD:AF:DP	0/1:20,32:0.62:52
chr1	181759657	rs704326	G	A	3790.77	.	AC=1;AF=0.500;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	0/1:220,189:0.46:409
chr1	182026813	rs12568050	G	C	6957.77	.	AC=1;AF=0.500;AN=2;DB;DP=691;set=Intersection	GT:AD:AF:DP	0/1:361,322:0.47:683
chr1	182027022	rs12564283	C	T	3652.77	.	AC=1;AF=0.500;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	0/1:219,174:0.44:393
chr1	182355046	rs2296519	A	G	2804.77	.	AC=1;AF=0.500;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	0/1:204,150:0.42:354
chr1	182356399	rs1058111	A	G	4962.77	.	AC=1;AF=0.500;AN=2;DB;DP=482;set=Intersection	GT:AD:AF:DP	0/1:239,239:0.50:478
chr1	182369078	rs6698722	G	A	3446.77	.	AC=1;AF=0.500;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	0/1:194,159:0.45:353
chr1	182369233	rs6674281	A	G	7328.77	.	AC=1;AF=0.500;AN=2;DB;DP=676;set=Intersection	GT:AD:AF:DP	0/1:335,334:0.50:669
chr1	182419540	rs138137377	G	A	572.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:27,24:0.47:51
chr1	182443462	rs649437	T	C	5364.77	.	AC=1;AF=0.500;AN=2;DB;DP=547;set=Intersection	GT:AD:AF:DP	0/1:292,250:0.46:542
chr1	182491107	rs607269	A	C	1449.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.52;SOR=1.900;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr1	182491107	.	AGTGT	CGTGC,CGTGT	427	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.42;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=4;MMLQ=24;MQ=60.0;NF=9,24;NR=1,5;PP=126,427;QD=17.9467874862;SC=CTTATAATATAGTGTTCTCCA;SbPval=0.83;Source=Platypus;TC=30;TCF=25;TCR=5;TR=10,29;WE=182491119;WS=182491097;set=Platypus	GT:AF:DP	0/1:0.33:30
chr1	182491111	rs12142736	T	C	296.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.857;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.59;ReadPosRankSum=0.550;SOR=0.632;set=HC	GT:AD:AF:DP	0/1:30,15:0.33:45
chr1	182499295	.	TA	T	84.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.103;ClippingRankSum=0.000;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.83;ReadPosRankSum=0.358;SOR=0.515;set=HC	GT:AD:AF:DP	0/1:81,21:0.21:102
chr1	182501933	rs266534	C	A	6430.77	.	AC=1;AF=0.500;AN=2;DB;DP=586;set=Intersection	GT:AD:AF:DP	0/1:271,307:0.53:578
chr1	182502033	rs266535	G	T	7436.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr1	182509269	rs266531	G	A	4245.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr1	182517642	rs10911094	C	A	4825.77	.	AC=1;AF=0.500;AN=2;DB;DP=460;set=Intersection	GT:AD:AF:DP	0/1:231,225:0.49:456
chr1	182520362	rs10606048	TCA	T	4499.73	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:94,115:0.55:209
chr1	182522552	rs266544	C	T	10594.77	.	AC=2;AF=1.00;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	1/1:0,388:1.00:388
chr1	182522762	rs266545	C	A	1295.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:59,54:0.48:113
chr1	182544815	rs11807829	T	C	564.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:44,30:0.41:74
chr1	182549019	rs533259	A	G	7021.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr1	182551337	rs627928	A	C	4097.77	.	AC=1;AF=0.500;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	0/1:175,187:0.52:362
chr1	182569626	rs1144566	T	C	13472.77	.	AC=2;AF=1.00;AN=2;DB;DP=518;set=Intersection	GT:AD:AF:DP	1/1:0,512:1.00:512
chr1	182571003	rs610367	C	T	1905.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr1	182571277	rs569790	C	T	8214.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr1	182573227	rs509476	T	C	11695.77	.	AC=2;AF=1.00;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	1/1:0,441:1.00:441
chr1	182778367	rs971040	G	A	10740.77	.	AC=2;AF=1.00;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	1/1:0,405:1.00:405
chr1	182827882	rs73063097	T	G	4074.77	.	AC=1;AF=0.500;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	0/1:194,189:0.49:383
chr1	182850727	rs6677840	T	C	2903.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr1	182854017	rs3130492	G	A	2380.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr1	182993025	rs10911194	C	T	24870.77	.	AC=2;AF=1.00;AN=2;DB;DP=937;set=Intersection	GT:AD:AF:DP	1/1:2,927:1.00:929
chr1	183072590	rs2296288	T	C	12134.77	.	AC=2;AF=1.00;AN=2;DB;DP=465;set=Intersection	GT:AD:AF:DP	1/1:0,452:1.00:452
chr1	183077296	rs3835273	A	AG	3110.73	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr1	183077615	rs3765521	C	T	2722.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.54;SOR=4.615;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr1	183077618	rs3765522	C	T	2584.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.35;SOR=5.856;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	183079509	rs2296291	C	T	2562.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr1	183079853	rs6672093	T	C	2394.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr1	183084607	rs3736888	AC	GA	8812.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr1	183085611	rs10689020	C	CA	449.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.612;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=1.575;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.99;ReadPosRankSum=-0.711;SOR=1.262;set=HC	GT:AD:AF:DP	0/1:17,33:0.66:50
chr1	183085696	rs6424888	A	G	7208.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr1	183085755	rs20563	A	G	12771.77	.	AC=2;AF=1.00;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	1/1:0,474:1.00:474
chr1	183086757	rs2296292	A	C	5251.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr1	183093875	rs20557	T	C	7632.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr1	183094547	rs20558	T	C	8724.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr1	183094802	rs10797850	G	A	1330.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	183095185	rs55856623	TAA	T	4501.73	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:17,167:0.91:184
chr1	183095234	rs1886501	A	G	9119.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	1/1:0,333:1.00:333
chr1	183095477	rs2296293	G	A	4030.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:2,150:0.99:152
chr1	183096253	rs3066017	T	TATA	1406.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	183096634	rs1413390	G	A	942.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:2,36:0.95:38
chr1	183096668	rs1413389	C	T	486.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	183097956	rs34133998	G	GTTA	5717.73	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr1	183098001	rs10797851	A	G	1378.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	183099560	rs20559	G	A	3192.77	.	AC=1;AF=0.500;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	0/1:188,162:0.46:350
chr1	183099701	rs2296300	G	A	3104.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr1	183100307	rs10679924	C	CAAAA	761.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.339;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=31.74;ReadPosRankSum=-2.007;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:3,21:0.88:24
chr1	183100555	rs2333620	T	C	14583.77	.	AC=2;AF=1.00;AN=2;DB;DP=371;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.92;QD=40.97;SOR=1.103;set=HC	GT:AD:AF:DP	1/1:0,356:1.00:356
chr1	183100562	.	G	GT	13680.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=318;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.91;QD=45.00;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,304:1.00:304
chr1	183100563	.	G	GTGTGTGTGT,GTGTGTGTGTGT	12840.73	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;DP=309;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.90;QD=175.90;SOR=5.247;set=HC	GT:AD:AF:DP	1/2:0,30,43:0.41,0.59:73
chr1	183100596	rs2333619	A	G	4332.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.70;QD=46.59;SOR=4.083;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr1	183100596	.	ATT	GTG	2947	.	AC=2;AF=1.00;AN=2;BRF=0.4;FR=1.0000;HP=3;HapScore=1;MGOF=143;MMLQ=28;MQ=56.45;NF=1;NR=97;PP=2947;QD=20;SC=GTGTGTGTGTATTGTCTTATC;SbPval=0.93;Source=Platypus;TC=106;TCF=3;TCR=103;TR=98;WE=183100606;WS=183100584;set=Platypus	GT:AD:AF:DP	1/1:8,98:0.92:106
chr1	183100598	rs4047797	T	G	4152.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.68;QD=48.29;SOR=4.125;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr1	183101427	rs148796825	AAAT	A	2032.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	183101444	rs12071514	A	C	3166.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.46;QD=45.90;SOR=2.704;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr1	183101451	rs12066735	T	G	3641.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.40;QD=46.10;SOR=2.720;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr1	183101471	rs12061219	G	A	4474.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr1	183101686	rs12095664	G	A	8103.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:3,293:0.99:296
chr1	183104013	rs2296299	G	A	6170.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr1	183104340	rs35182436	AT	A	4076.73	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:6,211:0.97:217
chr1	183105399	rs2296296	C	G	2527.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr1	183105534	rs20560	T	C	15941.77	.	AC=2;AF=1.00;AN=2;DB;DP=608;set=Intersection	GT:AD:AF:DP	1/1:0,598:1.00:598
chr1	183105705	rs20561	G	A	7556.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr1	183106739	rs10797854	G	A	3538.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr1	183155399	rs2276542	A	G	518.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:38,26:0.41:64
chr1	183155715	rs60707856	CT	C	8564.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr1	183155717	rs61418038	C	A	8573.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr1	183155778	rs6703054	A	C	1839.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr1	183176970	rs10668798	G	GT,GTT	1795.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-2.257;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=3.574;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=13.71;ReadPosRankSum=1.020;SOR=0.347;set=HC	GT:AD:AF:DP	1/2:26,58,47:0.44,0.36:131
chr1	183177218	rs647347	A	G	1391.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:66,58:0.47:124
chr1	183184524	rs2274981	C	T	839.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:37,36:0.49:73
chr1	183184616	rs2274980	C	T	2149.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:104,102:0.50:206
chr1	183184848	rs875794	T	G	385.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:28,19:0.40:47
chr1	183187494	rs10911285	T	C	2785.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:136,135:0.50:271
chr1	183187603	rs1129723	C	T	4507.77	.	AC=1;AF=0.500;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	0/1:217,212:0.49:429
chr1	183191144	rs2296307	C	T	824.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:42,39:0.48:81
chr1	183192304	rs1047980	T	G	2082.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:84,94:0.53:178
chr1	183192496	rs3738824	A	G	1355.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:58,61:0.51:119
chr1	183194619	rs2021956	A	G	637.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:24,24:0.50:48
chr1	183201970	rs2296303	G	C	1412.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:66,68:0.51:134
chr1	183204831	rs144355456	C	G	3522.77	.	AC=1;AF=0.500;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	0/1:194,166:0.46:360
chr1	183206573	rs1047981	G	A	3456.77	.	AC=1;AF=0.500;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	0/1:252,178:0.41:430
chr1	183207603	rs1925043	T	C	2582.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:120,116:0.49:236
chr1	183209086	rs2477436	C	A	468.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:30,22:0.42:52
chr1	183212171	rs3768594	C	A	402.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:10,15:0.60:25
chr1	183212548	rs3768593	T	G	1355.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:66,62:0.48:128
chr1	183253213	rs607332	G	A	796.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:35,33:0.49:68
chr1	183253959	rs603850	T	G	1864.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:108,92:0.46:200
chr1	183441991	rs6671819	G	A	141.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:13,7:0.35:20
chr1	183471295	rs789193	G	T	683.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	183486859	rs789169	G	A	14739.77	.	AC=2;AF=1.00;AN=2;DB;DP=561;set=Intersection	GT:AD:AF:DP	1/1:0,553:1.00:553
chr1	183502233	rs34309744	AT	A	2211.73	.	AC=1;AF=0.500;AN=2;DB;DP=153;MQ=60.07;set=Intersection	GT:AD:AF:DP	0/1:70,77:0.52:147
chr1	183515428	rs2298083	G	A	1589.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:62,70:0.53:132
chr1	183516100	rs699246	G	C	1610.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr1	183516440	rs2702182	G	A	758.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:28,34:0.55:62
chr1	183525452	rs699244	T	G	9045.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	1/1:0,329:1.00:329
chr1	183534935	rs2296164	C	T	3705.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr1	183535107	rs55652036	GATGAAA	G	359.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.382;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=7.375;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.99;ReadPosRankSum=-0.357;SOR=3.145;set=HC	GT:AD:AF:DP	0/1:8,10:0.56:18
chr1	183542387	rs2274064	T	C	7994.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr1	183617266	rs17436878	C	G	6271.77	.	AC=1;AF=0.500;AN=2;DB;DP=613;set=Intersection	GT:AD:AF:DP	0/1:307,292:0.49:599
chr1	183711483	rs3820689	C	T	2203.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr1	183775638	rs11579867	A	T	2777.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:108,130:0.55:238
chr1	183852914	rs10797919	G	C	2251.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:104,101:0.49:205
chr1	183867085	rs3814330	C	T	1912.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:73,83:0.53:156
chr1	183871637	rs4604659	G	A	821.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:50,41:0.45:91
chr1	183873898	rs10797920	A	G	964.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:27,40:0.60:67
chr1	183876287	rs16861715	T	C	1245.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:52,59:0.53:111
chr1	183891159	rs11803613	C	G	1376.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:39,61:0.61:100
chr1	183895178	rs4328036	G	A	3513.77	.	AC=1;AF=0.500;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	0/1:194,172:0.47:366
chr1	183895435	rs4382680	A	C	1885.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:51,74:0.59:125
chr1	183908222	rs3010040	C	T	1239.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:49,55:0.53:104
chr1	183909717	rs2296713	G	A	2609.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:124,125:0.50:249
chr1	183909934	rs1887278	G	A	1431.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:74,62:0.46:136
chr1	183942950	rs2296714	C	T	1689.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr1	183944089	rs2077202	A	C	1492.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	183944444	rs2378795	C	T	1525.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr1	183947757	rs3833521	G	GA	1403.73	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	184476621	rs9633308	T	C	440.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:10,17:0.63:27
chr1	184672179	rs7513276	A	G	1469.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:40,64:0.62:104
chr1	184677464	rs3736757	G	A	3187.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:136,150:0.52:286
chr1	184681081	rs7525074	A	G	703.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:26,31:0.54:57
chr1	184692999	rs71101940	T	TA	533.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.080;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=1.084;QD=7.31;ReadPosRankSum=0.138;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:28,45:0.62:73
chr1	184695571	rs10752941	C	T	1347.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:77,59:0.43:136
chr1	184706212	rs10711907	GT	G	952.73	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:34,33:0.49:67
chr1	184760001	rs570441	T	C	2089.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:86,90:0.51:176
chr1	184764067	rs581100	C	G	7865.77	.	AC=1;AF=0.500;AN=2;DB;DP=860;set=Intersection	GT:AD:AF:DP	0/1:454,397:0.47:851
chr1	184801065	rs487675	T	C	7292.77	.	AC=1;AF=0.500;AN=2;DB;DP=651;set=Intersection	GT:AD:AF:DP	0/1:310,337:0.52:647
chr1	185061018	rs12408074	G	A	203.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:10,11:0.52:21
chr1	185094277	rs7523448	G	T	815.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:33,38:0.54:71
chr1	185119794	rs1544051	C	T	841.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	185135745	rs950327	A	G	1436.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:80,76:0.49:156
chr1	185137454	rs58809696	T	TAAATGATAGAC	1661.73	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:49,42:0.46:91
chr1	185137461	rs56166198	A	T	589.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:51,35:0.41:86
chr1	185137464	.	T	TAA	1440.73	.	AC=1;AF=0.500;AN=2;DP=89;set=Intersection	GT:AD:AF:DP	0/1:47,40:0.46:87
chr1	185137628	rs10797999	C	T	73.80	.	AC=1;AF=0.500;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	0/1:1,4:0.80:5
chr1	185143721	rs10489579	A	G	3572.77	.	AC=1;AF=0.500;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	0/1:193,168:0.47:361
chr1	185144347	rs6696591	T	G	433.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.282;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=1.378;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.41;ReadPosRankSum=0.101;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:14,24:0.63:38
chr1	185153545	rs76544683	G	GT	1430.73	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:40,43:0.52:83
chr1	185171869	rs6698109	A	G	2252.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:111,114:0.51:225
chr1	185176015	rs2146328	A	G	109.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:7,5:0.42:12
chr1	185240474	rs12041704	A	G	2158.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:136,112:0.45:248
chr1	185259731	rs2378909	A	G	887.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:51,42:0.45:93
chr1	185267114	rs10174	A	G	1480.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:47,59:0.56:106
chr1	185951573	.	C	CT	258.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.703;ClippingRankSum=0.000;DP=128;ExcessHet=3.0103;FS=1.220;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.233;QD=3.28;ReadPosRankSum=0.697;SOR=0.458;set=HC	GT:AD:AF:DP	0/1:54,25:0.32:79
chr1	185958904	.	A	AT	208.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.226;ClippingRankSum=0.000;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.96;ReadPosRankSum=1.017;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:23,12:0.34:35
chr1	185988567	rs11290212	CT	C	684.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:3,38:0.93:41
chr1	185988891	.	G	T	1156.77	.	AC=1;AF=0.500;AN=2;DP=99;set=Intersection	GT:AD:AF:DP	0/1:46,49:0.52:95
chr1	186022032	rs10911808	T	G	2898.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr1	186026474	rs12129650	T	C	12061.77	.	AC=2;AF=1.00;AN=2;DB;DP=462;set=Intersection	GT:AD:AF:DP	1/1:0,456:1.00:456
chr1	186030902	rs10737266	G	T	2414.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr1	186031041	rs7522627	C	T	10219.77	.	AC=2;AF=1.00;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	1/1:0,400:1.00:400
chr1	186055371	rs6425017	A	G	2587.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:99,114:0.54:213
chr1	186057181	rs10911816	T	C	6709.77	.	AC=1;AF=0.500;AN=2;DB;DP=608;set=Intersection	GT:AD:AF:DP	0/1:304,296:0.49:600
chr1	186064760	rs1022671	A	T	561.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.795;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.03;ReadPosRankSum=0.713;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:25,31:0.55:56
chr1	186076224	.	C	CT	80.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.734;ClippingRankSum=0.000;DP=224;ExcessHet=3.0103;FS=1.898;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.47;ReadPosRankSum=2.282;SOR=0.475;set=HC	GT:AD:AF:DP	0/1:142,28:0.16:170
chr1	186077463	rs1555495	A	G	779.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:43,31:0.42:74
chr1	186081918	rs7555520	C	T	4498.77	.	AC=1;AF=0.500;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	0/1:253,219:0.46:472
chr1	186086578	rs10157742	G	A	3065.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.000;ClippingRankSum=0.000;DB;DP=296;ExcessHet=3.0103;FS=1.427;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.61;ReadPosRankSum=-1.585;SOR=0.599;set=HC	GT:AD:AF:DP	0/1:139,150:0.52:289
chr1	186088407	.	G	A	6074.77	.	AC=1;AF=0.500;AN=2;DP=616;set=Intersection	GT:AD:AF:DP	0/1:308,303:0.50:611
chr1	186089072	rs2891230	G	A	5935.77	.	AC=1;AF=0.500;AN=2;DB;DP=550;set=Intersection	GT:AD:AF:DP	0/1:271,271:0.50:542
chr1	186089112	rs2383434	T	C	4807.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.710;ClippingRankSum=0.000;DB;DP=528;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.45;ReadPosRankSum=2.261;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:266,243:0.48:509
chr1	186089363	rs10752962	C	A	493.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:41,26:0.39:67
chr1	186092076	rs2057388	A	C	994.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:30,42:0.58:72
chr1	186101317	rs77123846	G	A	742.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:25,30:0.55:55
chr1	186101539	rs10911825	A	G	3234.77	.	AC=1;AF=0.500;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	0/1:191,156:0.45:347
chr1	186113852	rs17531405	G	C	3860.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:159,176:0.53:335
chr1	186135236	rs6425021	G	A	1572.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:46,68:0.60:114
chr1	186141301	rs4651302	G	A	3782.77	.	AC=1;AF=0.500;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	0/1:203,185:0.48:388
chr1	186151493	rs16825040	C	G	2847.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:117,127:0.52:244
chr1	186265948	rs1293987	T	A	3280.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:135,149:0.52:284
chr1	186277088	rs68069719	G	C	39259.77	.	AC=2;AF=1.00;AN=2;DB;DP=1448;set=Intersection	GT:AD:AF:DP	1/1:0,1429:1.00:1429
chr1	186292720	rs2273774	A	T	256.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:4,10:0.71:14
chr1	186292803	rs3818293	C	T	563.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:49,29:0.37:78
chr1	186304109	rs2293569	C	T	682.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:37,30:0.45:67
chr1	186304298	rs3817586	C	T	2601.77	.	AC=1;AF=0.500;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	0/1:218,135:0.38:353
chr1	186313249	rs2950829	A	G	8121.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr1	186315474	rs35942197	C	A	821.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:32,34:0.52:66
chr1	186319282	rs3766701	C	T	206.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:15,10:0.40:25
chr1	186326757	rs3841803	TA	T	2661.73	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:129,133:0.51:262
chr1	186329869	rs2026187	C	G	2284.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:87,105:0.55:192
chr1	186330643	rs10494586	T	C	1198.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:37,47:0.56:84
chr1	186330700	rs36117514	A	AG	2845.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.431;ClippingRankSum=0.000;DB;DP=257;ExcessHet=3.0103;FS=3.020;MLEAC=1;MLEAF=0.500;MQ=60.34;MQRankSum=2.729;QD=11.07;ReadPosRankSum=0.627;SOR=0.525;set=HC	GT:AD:AF:DP	0/1:122,135:0.53:257
chr1	186357523	rs1290390	T	C	1395.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	186360656	.	CAAG	C	23	.	AC=1;AF=0.500;AN=2;BRF=0.11;FR=0.5000;HP=2;HapScore=2;MGOF=2;MMLQ=21;MQ=60.0;NF=2;NR=0;PP=23;QD=37.264837301;SC=AATAAGGTATCAAGAATGGGG;SbPval=1.0;Source=Platypus;TC=7;TCF=7;TCR=0;TR=2;WE=186360666;WS=186360646;set=Platypus	GT:AD:AF:DP	0/1:5,2:0.29:7
chr1	186360814	rs77026585	G	A	723.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:51,39:0.43:90
chr1	186363211	rs12728791	T	C	388.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.937;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=1.114;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.62;ReadPosRankSum=-0.437;SOR=0.434;set=HC	GT:AD:AF:DP	0/1:28,23:0.45:51
chr1	186367619	rs3766698	C	T	2298.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:97,97:0.50:194
chr1	186368338	rs59324641	AT	A	82.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=13.474;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.570;QD=1.48;ReadPosRankSum=-0.529;SOR=2.833;set=HC	GT:AD:AF:DP	0/1:39,17:0.30:56
chr1	186413714	rs11812050	G	C	1034.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:53,40:0.43:93
chr1	186648197	rs5277	C	G	2028.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:70,81:0.54:151
chr1	186649221	rs2745557	A	G	2446.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr1	186839861	rs7547993	G	A	3965.77	.	AC=1;AF=0.500;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	0/1:260,198:0.43:458
chr1	186839910	.	G	C	2836.77	.	AC=1;AF=0.500;AN=2;DP=312;set=Intersection	GT:AD:AF:DP	0/1:179,132:0.42:311
chr1	186863385	rs2307193	TAA	T	1329.73	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:34,35:0.51:69
chr1	186876205	.	AT	A	130.73	.	AC=1;AF=0.500;AN=2;DP=37;set=Intersection	GT:AD:AF:DP	0/1:20,11:0.35:31
chr1	186901738	rs12720584	TTCTTCTTTTAAAA	T	832.73	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:32,23:0.42:55
chr1	186908385	rs2307200	C	T	185.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:13,9:0.41:22
chr1	186919732	rs4650709	A	T	3522.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.41;SOR=2.049;set=HC	GT:AD:AF:DP	1/1:0,124:1.00:124
chr1	186919863	rs6661772	G	A	5926.77	.	AC=1;AF=0.500;AN=2;DB;DP=608;set=Intersection	GT:AD:AF:DP	0/1:306,293:0.49:599
chr1	186919993	rs969357	G	A	4905.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr1	186925168	rs5007825	A	G	1920.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr1	186925194	rs5007824	T	C	3431.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr1	186925552	rs2307199	T	C	6405.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr1	186946912	rs2307198	G	A	9177.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr1	187610538	rs10157977	C	G	838.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:1,26:0.96:27
chr1	187610698	rs10157987	C	A	3049.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:179,144:0.45:323
chr1	187610777	rs61822202	C	G	5186.77	.	AC=1;AF=0.500;AN=2;DB;DP=523;set=Intersection	GT:AD:AF:DP	0/1:278,244:0.47:522
chr1	187610852	rs10159182	A	C,T	15219.77	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=641;set=Intersection	GT:AF:DP	1/2:0.49,0.51:639
chr1	192128183	rs4454527	G	A	2624.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr1	192129370	rs4329489	G	A	557.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	192335271	rs59139714	C	CTAAT	2131.73	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:19,54:0.74:73
chr1	192544795	rs2984920	A	G	1613.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:19,56:0.75:75
chr1	192545099	rs7535818	G	A	2514.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:52,103:0.66:155
chr1	192548543	rs1323291	T	G	2703.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:32,71:0.69:103
chr1	192548559	rs2816308	G	C	2512.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:25,62:0.71:87
chr1	192778159	rs12130714	A	T	843.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:67,41:0.38:108
chr1	192779227	rs2746073	T	A	1127.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:14,43:0.75:57
chr1	192780088	rs5779653	GCT	G	12061.73	.	AC=1;AF=0.500;AN=2;DB;DP=513;set=Intersection	GT:AD:AF:DP	0/1:175,333:0.66:508
chr1	192780337	rs10607546	CAA	C	1923.73	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:18,49:0.73:67
chr1	192780498	rs17647363	A	G	501.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:42,22:0.34:64
chr1	193051685	rs2275444	G	A	572.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:65,33:0.34:98
chr1	193053996	.	GA	G	91.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.287;ClippingRankSum=0.000;DP=58;ExcessHet=3.0103;FS=6.981;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=1.461;QD=1.91;ReadPosRankSum=0.349;SOR=0.177;set=HC	GT:AD:AF:DP	0/1:33,15:0.31:48
chr1	193054154	rs10921309	G	A	326.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:70,23:0.25:93
chr1	193074371	rs10801175	A	G	101.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:27,8:0.23:35
chr1	193074651	rs10921310	T	A	839.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.065;ClippingRankSum=0.000;DB;DP=199;ExcessHet=3.0103;FS=8.423;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.42;ReadPosRankSum=1.028;SOR=0.320;set=HC	GT:AD:AF:DP	0/1:135,55:0.29:190
chr1	193090865	rs10737621	C	A	803.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.189;ClippingRankSum=0.000;DB;DP=267;ExcessHet=3.0103;FS=7.220;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.03;ReadPosRankSum=-0.819;SOR=1.155;set=HC	GT:AD:AF:DP	0/1:204,61:0.23:265
chr1	193094375	rs4466634	T	C	920.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:110,54:0.33:164
chr1	193104827	rs10921318	G	A	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.897;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.41;ReadPosRankSum=-1.268;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:11,3:0.21:14
chr1	193202001	rs10921328	C	G	35.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.821;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.88;ReadPosRankSum=-1.760;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:15,4:0.21:19
chr1	193205272	rs3738244	T	A	993.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:121,58:0.32:179
chr1	193218843	rs11583414	C	G	785.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.177;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=0.655;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.44;ReadPosRankSum=-0.642;SOR=0.769;set=HC	GT:AD:AF:DP	0/1:130,47:0.27:177
chr1	196227526	rs977157	A	G	5460.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr1	196242764	rs558895	T	G	1610.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr1	196251522	rs2477357	T	C	298.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.276;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.34;ReadPosRankSum=-1.650;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:17,15:0.47:32
chr1	196254970	rs2477360	C	T	5017.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr1	196311513	rs6658788	G	A	683.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:50,28:0.36:78
chr1	196367646	rs74958648	A	G	1509.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:55,71:0.56:126
chr1	196398619	rs1538684	T	C	401.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:39,20:0.34:59
chr1	196398974	rs12121250	T	A	480.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:38,24:0.39:62
chr1	196458827	.	A	AAATCGATC	357.73	.	AC=1;AF=0.500;AN=2;DP=17;set=Intersection	GT:AD:AF:DP	0/1:8,9:0.53:17
chr1	196461513	rs4607811	C	T	392.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	196642072	rs551397	C	T	1688.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:42,73:0.63:115
chr1	196642233	rs800292	G	A	2806.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:71,126:0.64:197
chr1	196642858	rs35284444	C	T	718.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:17,30:0.64:47
chr1	196654324	rs1061147	A	C	7566.77	.	AC=1;AF=0.500;AN=2;DB;DP=573;set=Intersection	GT:AD:AF:DP	0/1:226,345:0.60:571
chr1	196658497	rs482934	G	T	579.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:22,26:0.54:48
chr1	196658763	rs35695425	T	G	2252.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:61,103:0.63:164
chr1	196658905	rs12029785	G	A	243.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:9,10:0.53:19
chr1	196659237	rs1061170	C	T	2677.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:49,114:0.70:163
chr1	196670507	.	A	AGG	1498.73	.	AC=1;AF=0.500;AN=2;DP=159;set=Intersection	GT:AD:AF:DP	0/1:113,45:0.28:158
chr1	196684625	rs203674	G	T	843.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:9,34:0.79:43
chr1	196685011	rs111783865	A	AGAT	635.73	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:9,17:0.65:26
chr1	196705926	rs375046	C	A	716.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.558;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.63;ReadPosRankSum=-1.102;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:18,31:0.63:49
chr1	196712577	rs513699	T	C	2877.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.023;ClippingRankSum=0.000;DB;DP=454;ExcessHet=3.0103;FS=15.928;MLEAC=1;MLEAF=0.500;MQ=57.75;MQRankSum=-20.788;QD=6.40;ReadPosRankSum=-4.170;SOR=1.860;set=HC	GT:AD:AF:DP	0/1:359,91:0.20:450
chr1	196712586	rs61822181	C	T	3236.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.109;ClippingRankSum=0.000;DB;DP=538;ExcessHet=3.0103;FS=11.167;MLEAC=1;MLEAF=0.500;MQ=58.04;MQRankSum=-19.444;QD=6.07;ReadPosRankSum=-2.825;SOR=1.614;set=HC	GT:AD:AF:DP	0/1:414,119:0.22:533
chr1	196743883	rs59341218	G	T	1083.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:24,45:0.65:69
chr1	196744026	rs60627815	C	T	4081.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:101,184:0.65:285
chr1	196749097	rs61737525	C	T	1673.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:64,79:0.55:143
chr1	196757258	rs400642	C	T	253.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:13,11:0.46:24
chr1	196757392	rs400344	C	T	1345.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:61,63:0.51:124
chr1	196757569	rs138865637	C	T	5771.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:115,155:0.57:270
chr1	196757576	rs201711660	CTCTT	C	5666.73	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:105,149:0.59:254
chr1	196757912	rs61737521	T	C	4458.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;MQ=59.96;set=Intersection	GT:AD:AF:DP	0/1:79,195:0.71:274
chr1	196762302	rs387000	C	A	109.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:3,5:0.62:8
chr1	196762379	rs112153766	T	A	649.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:10,25:0.71:35
chr1	196762584	rs73073594	A	T	6804.77	.	AC=1;AF=0.500;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	0/1:131,307:0.70:438
chr1	196763746	.	A	AT	164.70	.	AC=1;AF=0.500;AN=2;DP=12;set=Intersection	GT:AD:AF:DP	0/1:2,10:0.83:12
chr1	196794519	rs442759	C	T	501.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:16,20:0.56:36
chr1	196794653	rs76655840	T	C	3409.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:102,157:0.61:259
chr1	196794909	rs409549	G	C	2615.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:40,104:0.72:144
chr1	196796184	rs399507	G	A	3220.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:47,142:0.75:189
chr1	196796237	rs112189960	A	G	2000.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.483;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=30.78;ReadPosRankSum=0.748;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:13,52:0.80:65
chr1	196796240	rs438781	T	A	2000.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.552;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=1.474;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=32.80;ReadPosRankSum=0.553;SOR=0.418;set=HC	GT:AD:AF:DP	0/1:12,49:0.80:61
chr1	196797123	rs677961	C	T	1663.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:61,79:0.56:140
chr1	196797238	rs425757	C	T	1407.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.876;ClippingRankSum=0.000;DB;DP=234;ExcessHet=3.0103;FS=25.669;MLEAC=1;MLEAF=0.500;MQ=58.20;MQRankSum=-12.299;QD=6.20;ReadPosRankSum=-0.584;SOR=1.865;set=HC	GT:AD:AF:DP	0/1:175,52:0.23:227
chr1	196797244	rs113811987	C	G	1291.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.829;ClippingRankSum=0.000;DB;DP=220;ExcessHet=3.0103;FS=27.354;MLEAC=1;MLEAF=0.500;MQ=58.27;MQRankSum=-12.961;QD=6.06;ReadPosRankSum=-1.006;SOR=2.065;set=HC	GT:AD:AF:DP	0/1:171,42:0.20:213
chr1	196799746	rs147253539	C	G	7426.77	.	AC=1;AF=0.500;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	0/1:141,299:0.68:440
chr1	196799951	rs73076053	T	C	2061.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:42,75:0.64:117
chr1	196801042	rs4230	G	T	8086.77	.	AC=1;AF=0.500;AN=2;DB;DP=632;set=Intersection	GT:AD:AF:DP	0/1:257,374:0.59:631
chr1	196874356	rs10801578	G	T	9342.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:0,340:1.00:340
chr1	196879301	.	G	GA	39.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.504;ClippingRankSum=0.000;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.17;ReadPosRankSum=0.432;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:25,9:0.26:34
chr1	196883650	rs201709230	G	A	1551.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:179,88:0.33:267
chr1	196887181	rs1971579	T	G	101.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr1	196918466	.	A	G	306.77	.	AC=1;AF=0.500;AN=2;DP=43;set=Intersection	GT:AD:AF:DP	0/1:28,13:0.32:41
chr1	196920178	rs3828032	C	T	3746.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:82,172:0.68:254
chr1	196926956	rs3748556	C	T	3040.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:80,127:0.61:207
chr1	196926973	rs3748555	C	A	3981.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:90,169:0.65:259
chr1	196946775	rs9427662	T	C	3864.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:99,173:0.64:272
chr1	197008597	rs5990	A	C	165.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.992;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=1.231;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.13;ReadPosRankSum=-1.101;SOR=0.472;set=HC	GT:AD:AF:DP	0/1:40,13:0.25:53
chr1	197009798	rs5998	A	G	529.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:90,34:0.27:124
chr1	197026672	rs1759009	A	G	166.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:14,8:0.36:22
chr1	197030201	rs5997	T	C	1393.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:117,77:0.40:194
chr1	197030237	rs17549277	CT	C	312.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.328;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.89;ReadPosRankSum=0.241;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:42,22:0.34:64
chr1	197031021	rs6003	C	T	1294.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.117;ClippingRankSum=0.000;DB;DP=338;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.89;ReadPosRankSum=1.934;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:246,87:0.26:333
chr1	197053373	rs12677	G	A	205.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:39,13:0.25:52
chr1	197055925	rs10754213	T	C	412.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:34,23:0.40:57
chr1	197059878	rs4915315	G	A	160.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:14,8:0.36:22
chr1	197059892	rs10754214	A	G	288.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:19,13:0.41:32
chr1	197059928	rs4915316	A	G	521.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:42,24:0.36:66
chr1	197070815	rs1412640	T	C	1443.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:187,79:0.30:266
chr1	197070901	rs964201	A	G	7906.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr1	197091537	rs4915337	A	T	1472.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:138,79:0.36:217
chr1	197094030	rs6676084	C	T	449.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:48,25:0.34:73
chr1	197104149	rs35659894	TA	T	243.73	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:22,11:0.33:33
chr1	197109042	rs1332663	C	T	219.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:25,13:0.34:38
chr1	197112533	rs6677082	G	A	1824.77	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:222,101:0.31:323
chr1	197113073	rs1571964	G	A	628.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:60,35:0.37:95
chr1	197141243	rs6428389	A	C	156.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.456;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=5.409;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.91;ReadPosRankSum=-0.894;SOR=1.356;set=HC	GT:AD:AF:DP	0/1:65,17:0.21:82
chr1	197316408	rs1572514	T	G	2122.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:35,81:0.70:116
chr1	197316435	rs1337167	T	C	4999.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr1	197325908	rs2786098	T	G	5683.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr1	197390368	rs3902057	A	G	9279.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:0,335:1.00:335
chr1	197398571	rs73071678	C	T	4347.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:97,190:0.66:287
chr1	197407942	rs980371	A	G	728.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	197482167	rs2013617	C	G	1331.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	197510025	rs3902061	G	T	1078.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	197510299	rs3850628	G	A	594.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	197515253	rs11276673	ATGTTCAG	A	187.87	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	197515715	rs4303099	G	A	672.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	197515777	rs4316386	A	T	1765.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	197576307	rs11411505	A	AT	1559.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	197741951	rs2477067	C	A	2220.73	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:5,99:0.95:104
chr1	197742171	rs2488396	C	T	880.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	197744098	rs117405403	G	C	342.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	197874949	rs2270763	T	C	7052.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr1	197876533	rs1546244	C	A	848.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	197887187	rs16842109	G	A	636.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:16,33:0.67:49
chr1	197890387	rs16842120	C	T	2029.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:35,81:0.70:116
chr1	197890422	rs12122995	C	G	5985.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr1	197890802	rs13376365	T	C	2681.77	.	AC=1;AF=0.500;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	0/1:280,143:0.34:423
chr1	197898023	rs10664707	C	CA,CAA	969.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.543;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.40;MQRankSum=0.000;QD=20.63;ReadPosRankSum=0.038;SOR=3.398;set=HC	GT:AD:AF:DP	1/2:2,15,30:0.32,0.64:47
chr1	197898395	rs111260868	G	GT	357.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;ClippingRankSum=0.000;DB;DP=391;ExcessHet=3.0103;FS=2.754;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.000;QD=1.18;ReadPosRankSum=0.144;SOR=0.509;set=HC	GT:AD:AF:DP	0/1:242,61:0.20:303
chr1	198201701	rs4600071	G	T	1058.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:127,60:0.32:187
chr1	198214322	rs72101993	GAGGAGA	G	1530.73	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:14,40:0.74:54
chr1	198225658	rs6688481	T	C	235.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	198288709	rs6679100	A	G	4267.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr1	198492454	rs1055160	T	C	3860.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr1	198498325	rs374339328	AATATAT	A	1560.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.707;ClippingRankSum=0.000;DB;DP=217;ExcessHet=3.0103;FS=7.654;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.333;QD=9.94;ReadPosRankSum=-0.378;SOR=1.396;set=HC	GT:AD:AF:DP	0/1:104,53:0.34:157
chr1	198663346	rs78958674	G	A	144.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:13,8:0.38:21
chr1	198701289	rs1932433	T	C	1044.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	198711170	.	C	CA	44.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.899;ClippingRankSum=0.000;DP=131;ExcessHet=3.0103;FS=4.005;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=3.201;QD=0.40;ReadPosRankSum=0.173;SOR=1.355;set=HC	GT:AD:AF:DP	0/1:91,22:0.19:113
chr1	198717218	rs71286550	G	GT	65.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.022;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=2.081;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.38;ReadPosRankSum=-1.022;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:8,7:0.47:15
chr1	199996821	rs59429274	AT	A	227.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.298;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=8.417;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.30;ReadPosRankSum=-0.216;SOR=1.774;set=HC	GT:AD:AF:DP	0/1:71,28:0.28:99
chr1	199998281	rs112399233	G	T	2842.77	.	AC=1;AF=0.500;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	0/1:313,152:0.33:465
chr1	199998304	rs60535681	G	A	5275.77	.	AC=1;AF=0.500;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	0/1:116,229:0.66:345
chr1	200008941	rs113762480	G	T	558.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.660;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.42;ReadPosRankSum=0.281;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:71,32:0.31:103
chr1	200013123	rs2737636	C	A	1402.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:30,57:0.66:87
chr1	200014560	rs41300849	C	T	902.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:49,44:0.47:93
chr1	200014762	rs2817008	A	G	2361.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.80;SOR=1.483;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr1	200014762	.	AACTG	GACTG,GACTT	641	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.35;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=15;MMLQ=24;MQ=60.0;NF=22,8;NR=40,15;PP=641,330;QD=10.8995356862;SC=CAAGGACATGAACTGTAAAAC;SbPval=0.59;Source=Platypus;TC=63;TCF=23;TCR=40;TR=62,23;WE=200014774;WS=200014752;set=Platypus	GT:AF:DP	0/1:0.98:63
chr1	200014766	rs2363454	G	T	452.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.282;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.47;ReadPosRankSum=-0.086;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:46,24:0.34:70
chr1	200014790	rs2817009	A	G	621.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:14,26:0.65:40
chr1	200017586	rs2821368	C	G	7496.77	.	AC=1;AF=0.500;AN=2;DB;DP=525;set=Intersection	GT:AD:AF:DP	0/1:196,325:0.62:521
chr1	200080462	rs111949351	A	AT	52.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.134;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=1.227;MLEAC=1;MLEAF=0.500;MQ=60.61;MQRankSum=5.402;QD=0.68;ReadPosRankSum=1.129;SOR=0.951;set=HC	GT:AD:AF:DP	0/1:66,12:0.15:78
chr1	200080464	rs202167972	C	A	410.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.878;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=1.251;MLEAC=1;MLEAF=0.500;MQ=60.63;MQRankSum=5.124;QD=4.89;ReadPosRankSum=1.090;SOR=1.025;set=HC	GT:AD:AF:DP	0/1:61,23:0.27:84
chr1	200089872	rs10494808	C	T	990.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:92,50:0.35:142
chr1	200143064	rs57415168	CTT	C	94.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.904;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.38;ReadPosRankSum=-0.026;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:19,9:0.32:28
chr1	200143442	rs1060061	T	C	1231.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	200182654	rs6427805	T	C	1919.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr1	200311868	rs2790109	C	G	963.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:136,60:0.31:196
chr1	200312546	rs61101900	CA	C	254.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.661;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.61;ReadPosRankSum=0.302;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:3,21:0.88:24
chr1	200342046	rs6677545	A	C	807.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:97,44:0.31:141
chr1	200522566	rs12120084	G	C	1963.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:77,84:0.52:161
chr1	200523514	rs7548174	A	G	463.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.751;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.46;ReadPosRankSum=-1.314;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:11,19:0.63:30
chr1	200523518	rs11417929	C	CA	88.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.663;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.54;ReadPosRankSum=1.988;SOR=0.404;set=HC	GT:AD:AF:DP	0/1:25,10:0.29:35
chr1	200534248	rs7543730	C	T	6993.77	.	AC=1;AF=0.500;AN=2;DB;DP=497;set=Intersection	GT:AD:AF:DP	0/1:168,321:0.66:489
chr1	200538885	rs10800711	C	T	915.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	200538962	rs73070685	G	A	454.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:32,23:0.42:55
chr1	200544650	rs142403729	TACAC	T	1884.73	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:125,61:0.33:186
chr1	200549590	rs10753877	T	C	309.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:4,13:0.76:17
chr1	200550243	.	G	GAAAAAAA	82.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=16.55;ReadPosRankSum=-0.000;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr1	200555203	rs58696327	G	T	247.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:11,10:0.48:21
chr1	200555482	rs6691410	C	T	357.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:7,15:0.68:22
chr1	200558363	rs6665951	T	C	3808.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr1	200561456	rs16846948	T	C	769.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:73,34:0.32:107
chr1	200569392	rs2809357	C	A	8422.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chr1	200574959	rs2808238	T	C	348.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:21,18:0.46:39
chr1	200575744	rs10577607	CTAAA	C	1005.73	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:54,29:0.35:83
chr1	200575794	rs2794410	A	G	1250.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:118,60:0.34:178
chr1	200576045	rs57214293	G	GA	89.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.384;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=15.287;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.99;ReadPosRankSum=-1.396;SOR=0.013;set=HC	GT:AD:AF:DP	0/1:35,10:0.22:45
chr1	200578093	rs2794409	G	A	2535.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr1	200583380	rs2808241	T	G	311.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:54,21:0.28:75
chr1	200594240	rs2809350	G	A	3467.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr1	200610525	rs5780032	TA	T	305.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.374;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.29;ReadPosRankSum=-0.077;SOR=1.230;set=HC	GT:AD:AF:DP	1/1:2,21:0.91:23
chr1	200618238	rs6665604	T	C	3170.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr1	200619530	rs2809365	T	C	2589.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr1	200816519	.	TTG	T	900	.	AC=2;AF=1.00;AN=2;BRF=0.37;FR=1.0000;HP=6;HapScore=1;MGOF=8;MMLQ=24;MQ=59.26;NF=1;NR=31;PP=900;QD=28.34375;SC=CAGGGTTTTTTTGTGTGTGTG;SbPval=0.69;Source=Platypus;TC=54;TCF=2;TCR=52;TR=32;WE=200816531;WS=200816509;set=Platypus	GT:AD:AF:DP	1/1:22,32:0.59:54
chr1	200816520	.	TG	T	3061.73	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=1.102;ClippingRankSum=0.000;DP=86;ExcessHet=3.0103;FS=2.946;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=37.80;ReadPosRankSum=-0.990;SOR=1.893;set=HC	GT:AD:AF:DP	1/1:2,79:0.98:81
chr1	200816522	rs35428855	TG	T	1282.73	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=1.972;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=1.742;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=16.45;ReadPosRankSum=0.595;SOR=1.491;set=HC	GT:AD:AF:DP	1/1:7,71:0.91:78
chr1	200816658	rs2131834	T	C	928.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	200821924	rs2275194	C	T	1910.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr1	200824108	rs2275193	C	T	2188.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr1	200824169	.	T	TCTTATCTTTGTATTACC	253.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.620;ClippingRankSum=0.000;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.03;ReadPosRankSum=-1.101;SOR=0.275;set=HC	GT:AD:AF:DP	0/1:15,8:0.35:23
chr1	200826395	rs2292095	A	T	934.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	200868493	rs72225687	GTGTGTGTGCA	G	1678.73	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:33,52:0.61:85
chr1	200876788	rs35342076	T	TAA	206.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.595;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.84;ReadPosRankSum=-0.709;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:8,13:0.62:21
chr1	200877786	rs2279837	T	C	815.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:54,39:0.42:93
chr1	200877850	rs41299637	T	G	3190.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:106,150:0.59:256
chr1	200880978	rs296520	C	T	80.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.429;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.09;MQRankSum=-5.046;QD=2.31;ReadPosRankSum=0.500;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:28,7:0.20:35
chr1	200881172	rs296521	C	A	552.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:52,30:0.37:82
chr1	200881392	rs10800746	C	T	501.94	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:3,21:0.88:24
chr1	200943793	rs71991687	CAGGA	C	8650.73	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr1	200944840	rs296563	T	G	278.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:30,13:0.30:43
chr1	200957697	rs12142704	A	G	2111.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:26,76:0.75:102
chr1	200960307	rs2297909	G	A	965.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:25,37:0.60:62
chr1	200965601	rs10920088	G	A	731.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:22,32:0.59:54
chr1	200967490	rs10920089	A	G	931.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:24,39:0.62:63
chr1	200978379	rs35918012	G	C	2198.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:36,91:0.72:127
chr1	201009556	rs1546416	A	G	4105.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:100,180:0.64:280
chr1	201009897	rs6427875	T	C	2104.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr1	201010862	rs6675915	T	C	495.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:14,21:0.60:35
chr1	201018160	.	T	G	1689.77	.	AC=1;AF=0.500;AN=2;DP=337;set=Intersection	GT:AD:AF:DP	0/1:235,96:0.29:331
chr1	201020105	rs6702590	A	G	333.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.174;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=4.502;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.09;ReadPosRankSum=2.090;SOR=1.214;set=HC	GT:AD:AF:DP	0/1:82,26:0.24:108
chr1	201031307	rs2297903	A	C	467.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:22,20:0.48:42
chr1	201031655	.	AGAGG	A	112.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.484;ClippingRankSum=0.000;DP=198;ExcessHet=3.0103;FS=42.458;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.77;ReadPosRankSum=-1.134;SOR=0.272;set=HC	GT:AD:AF:DP	0/1:133,13:0.09:146
chr1	201036260	rs148945933	A	G	525.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:40,25:0.38:65
chr1	201038687	rs7415038	A	G	3450.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:77,154:0.67:231
chr1	201044748	rs1998721	A	G	3826.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:81,169:0.68:250
chr1	201047062	rs4915476	G	A	1864.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:168,100:0.37:268
chr1	201047075	rs4915477	A	G	8022.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr1	201047111	rs9427714	A	G	6111.77	.	AC=1;AF=0.500;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	0/1:167,268:0.62:435
chr1	201052310	rs12742169	A	T	5606.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.355;ClippingRankSum=0.000;DB;DP=224;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.26;ReadPosRankSum=-0.023;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:83,139:0.63:222
chr1	201052310	.	AGA	TGC	2944	.	AC=1;AF=0.500;AN=2;BRF=0.38;FR=0.5000;HP=2;HapScore=1;MGOF=3;MMLQ=24;MQ=60.0;NF=68;NR=35;PP=2944;QD=20;SC=GGTCAGCCAGAGAGGCTGGTT;SbPval=0.45;Source=Platypus;TC=175;TCF=118;TCR=57;TR=103;WE=201052320;WS=201052300;set=Platypus	GT:AD:AF:DP	0/1:72,103:0.59:175
chr1	201052312	rs12742170	A	C	5606.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.895;ClippingRankSum=0.000;DB;DP=231;ExcessHet=3.0103;FS=0.513;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.48;ReadPosRankSum=-0.157;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:85,144:0.63:229
chr1	201052474	rs12724643	T	C	3313.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:62,136:0.69:198
chr1	201052562	rs12743065	G	T	685.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:9,24:0.73:33
chr1	201054197	rs41267505	G	T	101.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.650;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=1.574;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.21;ReadPosRankSum=0.857;SOR=1.172;set=HC	GT:AD:AF:DP	0/1:37,9:0.20:46
chr1	201060865	rs2296383	G	A	5405.77	.	AC=1;AF=0.500;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	0/1:122,243:0.67:365
chr1	201112981	rs8158	A	G	7877.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:2,285:0.99:287
chr1	201113118	rs3738266	A	G	6113.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr1	201116018	rs3752979	C	G	4916.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr1	201120730	rs2068152	C	A	754.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:1,26:0.96:27
chr1	201122784	rs6684980	C	T	6141.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr1	201122947	rs1925361	T	G	11328.77	.	AC=2;AF=1.00;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	1/1:0,426:1.00:426
chr1	201163191	rs1107128	G	T	4904.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr1	201166281	rs7533096	C	T	10282.77	.	AC=2;AF=1.00;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	1/1:0,370:1.00:370
chr1	201166383	rs4915221	G	A	13106.77	.	AC=2;AF=1.00;AN=2;DB;DP=491;set=Intersection	GT:AD:AF:DP	1/1:0,485:1.00:485
chr1	201166435	rs11589317	T	C	9784.77	.	AC=2;AF=1.00;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	1/1:0,370:1.00:370
chr1	201170772	rs10157730	A	G	2731.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr1	201170824	rs10158976	C	G	5938.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr1	201171007	rs10800762	T	G	3333.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr1	201173104	rs832160	C	T	2263.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:31,95:0.75:126
chr1	201175227	rs832156	C	A	714.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.385;ClippingRankSum=0.000;DB;DP=295;ExcessHet=3.0103;FS=8.829;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.43;ReadPosRankSum=2.254;SOR=1.279;set=HC	GT:AD:AF:DP	0/1:237,57:0.19:294
chr1	201175274	rs9651057	A	G	5697.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:71,251:0.78:322
chr1	201175715	rs1341631	G	T	802.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.368;ClippingRankSum=0.000;DB;DP=456;ExcessHet=3.0103;FS=0.699;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.78;ReadPosRankSum=0.397;SOR=0.769;set=HC	GT:AD:AF:DP	0/1:374,78:0.17:452
chr1	201176018	rs10753895	A	G	307.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.343;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.04;ReadPosRankSum=-0.784;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:123,28:0.19:151
chr1	201176108	rs12094334	G	A	225.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.276;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.84;ReadPosRankSum=0.847;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:102,21:0.17:123
chr1	201176968	rs12063867	A	G	215.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.892;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.25;ReadPosRankSum=-1.836;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:147,26:0.15:173
chr1	201177246	rs72751165	T	C	1064.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.450;ClippingRankSum=0.000;DB;DP=492;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.20;ReadPosRankSum=-0.210;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:391,93:0.19:484
chr1	201177278	rs7551098	C	T	996.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.030;ClippingRankSum=0.000;DB;DP=494;ExcessHet=3.0103;FS=1.452;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.07;ReadPosRankSum=-1.291;SOR=0.780;set=HC	GT:AD:AF:DP	0/1:390,91:0.19:481
chr1	201177538	rs7551538	G	T	1993.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.434;ClippingRankSum=0.000;DB;DP=545;ExcessHet=3.0103;FS=1.320;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.72;ReadPosRankSum=-0.629;SOR=0.845;set=HC	GT:AD:AF:DP	0/1:408,128:0.24:536
chr1	201178470	rs12757706	G	A	719.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.706;ClippingRankSum=0.000;DB;DP=222;ExcessHet=3.0103;FS=3.697;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-1.737;QD=3.29;ReadPosRankSum=-0.421;SOR=0.989;set=HC	GT:AD:AF:DP	0/1:165,54:0.25:219
chr1	201178904	.	A	G	2590	.	AC=1;AF=0.500;AN=2;BRF=0.51;FR=0.5000;HP=1;HapScore=2;MGOF=40;MMLQ=26;MQ=47.06;NF=80;NR=58;PP=2590;QD=20;SC=GGGGGTTCTGAAGAAATGGGG;SbPval=0.13;Source=Platypus;TC=337;TCF=159;TCR=178;TR=138;WE=201178912;WS=201178894;set=Platypus	GT:AD:AF:DP	0/1:199,138:0.41:337
chr1	201178924	.	AAG	GAA	2944	.	AC=1;AF=0.500;AN=2;BRF=0.49;FR=0.5000;HP=1;HapScore=1;MGOF=35;MMLQ=24;MQ=44.53;NF=93;NR=70;PP=2944;QD=20;SC=GTCAGTGAATAAGGCAGGTTA;SbPval=0.22;Source=Platypus;TC=331;TCF=165;TCR=166;TR=163;WE=201178934;WS=201178914;set=Platypus	GT:AD:AF:DP	0/1:168,163:0.49:331
chr1	201181217	rs12070918	A	G	1556.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.648;ClippingRankSum=0.000;DB;DP=800;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.97;ReadPosRankSum=-1.054;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:646,145:0.18:791
chr1	201181223	rs12070919	A	G	24136.77	.	AC=2;AF=1.00;AN=2;DB;DP=780;set=Intersection	GT:AD:AF:DP	1/1:0,772:1.00:772
chr1	201181920	rs12060924	G	T	725.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.047;ClippingRankSum=0.000;DB;DP=508;ExcessHet=3.0103;FS=0.707;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.44;ReadPosRankSum=-1.062;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:422,83:0.16:505
chr1	201182779	rs2282413	A	G	715.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.321;ClippingRankSum=0.000;DB;DP=445;ExcessHet=3.0103;FS=0.725;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.64;ReadPosRankSum=2.579;SOR=0.764;set=HC	GT:AD:AF:DP	0/1:362,75:0.17:437
chr1	201183363	rs2282415	C	T	653.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.257;ClippingRankSum=0.000;DB;DP=276;ExcessHet=3.0103;FS=1.163;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.37;ReadPosRankSum=-1.100;SOR=0.795;set=HC	GT:AD:AF:DP	0/1:220,56:0.20:276
chr1	201183402	rs1568810	T	C	551.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.104;ClippingRankSum=0.000;DB;DP=319;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.74;ReadPosRankSum=1.868;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:260,58:0.18:318
chr1	201184097	rs4915496	G	A	3525.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:71,157:0.69:228
chr1	201184275	rs2275673	C	T	600.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:54,31:0.36:85
chr1	201187764	rs10920144	T	C	8743.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:0,336:1.00:336
chr1	201187828	rs3738268	T	C	6391.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr1	201187954	rs6667020	C	T	1171.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	201190732	rs3738269	G	A	4371.77	.	AC=1;AF=0.500;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	0/1:116,199:0.63:315
chr1	201193668	rs6687494	G	T	1924.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr1	201195119	rs3738270	C	T	2630.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.237;ClippingRankSum=0.000;DB;DP=564;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.66;ReadPosRankSum=-0.243;SOR=0.750;set=HC	GT:AD:AF:DP	0/1:405,159:0.28:564
chr1	201195296	rs3738271	G	A	1918.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:31,75:0.71:106
chr1	201197331	rs3753971	G	A	1536.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr1	201252866	rs2268147	C	T	7460.77	.	AC=1;AF=0.500;AN=2;DB;DP=444;set=Intersection	GT:AD:AF:DP	0/1:115,325:0.74:440
chr1	201282167	rs1772860	C	G	981.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:67,40:0.37:107
chr1	201282573	rs35507614	A	G	5192.77	.	AC=1;AF=0.500;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	0/1:137,237:0.63:374
chr1	201285591	rs72753125	G	A	273.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:12,14:0.54:26
chr1	201285759	rs1779297	A	G	2334.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr1	201285909	rs1534051	A	G	871.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	201286614	rs11336457	GA	G	2152.73	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:5,110:0.96:115
chr1	201286628	rs1772823	C	G	5726.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:1,144:0.99:145
chr1	201288007	rs1794868	G	A	263.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	201288898	rs1722759	A	C	5143.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr1	201290968	rs1779292	T	G	2916.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr1	201291066	rs2071960	C	T	9736.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	1/1:0,347:1.00:347
chr1	201292110	rs1779288	T	C	6930.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr1	201293512	rs36076398	TG	T	292.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.105;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=1.070;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.18;ReadPosRankSum=0.634;SOR=0.518;set=HC	GT:AD:AF:DP	0/1:75,17:0.18:92
chr1	201293970	rs1620046	C	T	932.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	201293985	rs854505	G	A	249.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:25,14:0.36:39
chr1	201294278	rs41269943	G	A	2286.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:29,90:0.76:119
chr1	201331554	rs1104859	T	G	4528.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr1	201331664	rs2365652	C	A	2485.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr1	201334382	rs3729547	G	A	7123.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr1	201334795	rs3729845	C	T	7592.77	.	AC=1;AF=0.500;AN=2;DB;DP=551;set=Intersection	GT:AD:AF:DP	0/1:202,342:0.63:544
chr1	201335899	rs1573230	C	T	3251.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr1	201337170	rs3729842	A	G	1893.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr1	201338553	rs10800776	T	C	4922.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr1	201338586	rs10920183	A	G	3081.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:1,100:0.99:101
chr1	201338896	rs10920184	T	C	8470.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr1	201339043	rs12049476	C	T	5586.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr1	201341175	rs45533739	CAGAAG	C	8540.73	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr1	201341225	rs45582534	C	T	1757.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:178,97:0.35:275
chr1	201341341	rs868407	C	T	4117.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr1	201350983	rs16848494	C	T	1253.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.325;ClippingRankSum=0.000;DB;DP=308;ExcessHet=3.0103;FS=0.465;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.18;ReadPosRankSum=-0.211;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:215,85:0.28:300
chr1	201351313	rs113808877	A	G	279.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:36,15:0.29:51
chr1	201351337	rs111489399	C	T	365.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:50,21:0.30:71
chr1	201351644	.	TGAAATGACTCCTCCTCTCCC	T	260.73	.	AC=1;AF=0.500;AN=2;DP=34;set=Intersection	GT:AD:AF:DP	0/1:14,8:0.36:22
chr1	201352642	rs112090790	A	G	329.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.339;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.11;ReadPosRankSum=-1.537;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:83,23:0.22:106
chr1	201353825	rs79927941	C	T	306.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:60,21:0.26:81
chr1	201354102	rs34070820	C	G	250.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:2,9:0.82:11
chr1	201355522	rs4128458	T	C	3249.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:4,117:0.97:121
chr1	201355669	rs68021059	T	C	2441.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:89,105:0.54:194
chr1	201355943	rs2799677	C	T	6372.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr1	201383616	rs2026593	A	G	1491.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr1	201383643	rs2026594	A	C	2770.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr1	201434740	rs1053592	G	A	3749.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:87,173:0.67:260
chr1	201437477	rs1256930	A	T	446.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:48,22:0.31:70
chr1	201453289	rs576697	T	C	575.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	201749520	rs529581	G	C	5256.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:112,225:0.67:337
chr1	201752429	rs527725	A	C	1885.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:21,69:0.77:90
chr1	201754410	.	CTTT	C,CT	1626.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.656;ClippingRankSum=0.000;DP=87;ExcessHet=3.0103;FS=1.239;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.99;MQRankSum=1.497;QD=20.08;ReadPosRankSum=-1.419;SOR=0.446;set=HC	GT:AD:AF:DP	1/2:13,36,32:0.44,0.40:81
chr1	201754444	rs16849342	G	C	517.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:102,35:0.26:137
chr1	201755469	rs12563363	C	G	1150.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:24,49:0.67:73
chr1	201763184	rs564440	T	C	3277.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.43;SOR=0.902;set=HC	GT:AD:AF:DP	1/1:0,124:1.00:124
chr1	201763208	rs12028333	A	G	1864.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:68,93:0.58:161
chr1	201763499	rs567185	C	T	244.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:23,13:0.36:36
chr1	201772863	rs34105833	T	TG	4703.73	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:2,170:0.99:172
chr1	201788804	rs11803449	G	A	824.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:20,31:0.61:51
chr1	201816572	rs12042456	G	A	1054.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:23,42:0.65:65
chr1	201816639	rs146207613	ATCTTTT	A	1630.73	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:109,48:0.31:157
chr1	201821443	rs1400875	T	C	627.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:80,35:0.30:115
chr1	201826340	rs2172935	C	T	1705.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:223,99:0.31:322
chr1	201826482	rs2132363	C	T	269.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.645;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=12.538;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.00;ReadPosRankSum=-1.962;SOR=0.062;set=HC	GT:AD:AF:DP	0/1:37,17:0.31:54
chr1	201832864	rs2494115	G	C	565.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:42,24:0.36:66
chr1	201837934	rs34353605	CGT	C	1457.73	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:122,78:0.39:200
chr1	201838107	rs2820310	G	A	509.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:26,22:0.46:48
chr1	201840059	rs150361248	GTTATT	G	905.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.015;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=0.943;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.478;QD=10.78;ReadPosRankSum=0.024;SOR=0.920;set=HC	GT:AD:AF:DP	0/1:57,27:0.32:84
chr1	201840210	rs950114	T	C	1490.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:53,65:0.55:118
chr1	201840464	rs2644124	T	C	3644.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr1	201844128	rs2678203	G	A	4278.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr1	201860626	rs2250377	A	G	6658.77	.	AC=1;AF=0.500;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	0/1:148,298:0.67:446
chr1	201861016	rs2279681	C	G	6513.77	.	AC=1;AF=0.500;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	0/1:124,275:0.69:399
chr1	201865763	rs8028	A	G	4472.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:88,193:0.69:281
chr1	201869257	rs2820312	G	A	2192.77	.	AC=1;AF=0.500;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	0/1:247,118:0.32:365
chr1	201924504	rs3806355	T	C	4181.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:67,173:0.72:240
chr1	201924749	rs3820438	G	C	6582.77	.	AC=1;AF=0.500;AN=2;DB;DP=448;set=Intersection	GT:AD:AF:DP	0/1:136,303:0.69:439
chr1	201926386	rs57833794	C	CT	5014.73	.	AC=1;AF=0.500;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	0/1:142,270:0.66:412
chr1	201938482	rs58623305	C	T	118.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:21,7:0.25:28
chr1	201952294	rs73074403	C	G	1097.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:21,31:0.60:52
chr1	201952310	rs112370844	T	G	911.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:17,24:0.59:41
chr1	201952574	rs4950806	T	C	1807.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:35,77:0.69:112
chr1	201952598	rs56768485	G	A	2203.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:50,102:0.67:152
chr1	201952755	rs4950807	T	A	1428.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:63,69:0.52:132
chr1	201970562	rs4332408	T	C	11338.77	.	AC=2;AF=1.00;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	1/1:0,416:1.00:416
chr1	201970986	rs35227221	C	CA	2052.73	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:25,63:0.72:88
chr1	201973565	rs3820439	G	A	2627.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:56,115:0.67:171
chr1	201974712	rs12712	G	C	1628.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:156,82:0.34:238
chr1	201980119	rs2819361	C	G	1396.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	201981005	.	C	CA	178.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.162;ClippingRankSum=0.000;DP=52;ExcessHet=3.0103;FS=1.795;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.97;ReadPosRankSum=-0.916;SOR=1.497;set=HC	GT:AD:AF:DP	0/1:25,20:0.44:45
chr1	201981218	rs11543979	C	G	1030.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:162,60:0.27:222
chr1	201981354	rs56310296	TG	CC	632.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;JOINED;set=Intersection	GT:AD:AF:DP	0/1:27,17:0.39:44
chr1	201981862	rs2819362	T	C	9167.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:0,350:1.00:350
chr1	202092046	rs3795593	C	T	761.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	202092360	rs3795595	G	A	9263.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	1/1:0,336:1.00:336
chr1	202092415	rs3795596	A	G	12689.77	.	AC=2;AF=1.00;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	1/1:0,461:1.00:461
chr1	202092580	rs7516762	T	C	9768.77	.	AC=2;AF=1.00;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	1/1:2,368:0.99:370
chr1	202096815	rs3820380	G	A	7451.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr1	202097330	rs114501386	G	C	13303.77	.	AC=1;AF=0.500;AN=2;DB;DP=835;set=Intersection	GT:AD:AF:DP	0/1:274,553:0.67:827
chr1	202103802	rs4342901	G	A	950.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	202107422	.	AACACACAC	A,AAC	2271.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=75;set=Intersection	GT:AF:DP	1/2:0.27,0.73:60
chr1	202113835	rs4989100	T	G	4137.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr1	202122783	rs11590076	C	A	1370.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	202124880	.	AGTT	A	1178.73	.	AC=1;AF=0.500;AN=2;DP=57;set=Intersection	GT:AD:AF:DP	0/1:14,31:0.69:45
chr1	202129826	rs4309039	T	C	13672.77	.	AC=2;AF=1.00;AN=2;DB;DP=518;set=Intersection	GT:AD:AF:DP	1/1:0,514:1.00:514
chr1	202129895	rs3935295	G	A	6615.77	.	AC=1;AF=0.500;AN=2;DB;DP=485;set=Intersection	GT:AD:AF:DP	0/1:178,303:0.63:481
chr1	202130754	rs3934648	T	C	4237.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr1	202155331	.	C	CTGCCCCCTTGCCCCCT	375.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.014;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=0.052;QD=12.52;ReadPosRankSum=0.068;SOR=0.188;set=HC	GT:AD:AF:DP	0/1:21,9:0.30:30
chr1	202155543	rs2993432	A	C	10134.77	.	AC=2;AF=1.00;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	1/1:0,364:1.00:364
chr1	202156135	rs139095833	C	CCCTCGCT,CCCTCGCTCCTCGCTCCTCGCT	1668.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=62;set=Intersection	GT:AF:DP	1/2:0.30,0.70:33
chr1	202156482	rs3010088	G	A	6392.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr1	202156628	rs3010089	A	C	7510.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:1,278:1.00:279
chr1	202163063	rs2361431	T	C	2636.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr1	202163364	rs2077598	C	G	1319.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	202163516	rs1812761	C	A	3512.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr1	202163621	rs3120747	G	A	1464.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;MQ=59.98;set=Intersection	GT:AD:AF:DP	0/1:164,87:0.35:251
chr1	202183308	rs10920362	C	T	710.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:83,39:0.32:122
chr1	202196931	rs1452070	G	A	585.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:90,37:0.29:127
chr1	202197008	.	T	TCAC	2337.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.316;ClippingRankSum=0.000;DP=265;ExcessHet=3.0103;FS=3.117;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=2.819;QD=9.10;ReadPosRankSum=-0.078;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:186,71:0.28:257
chr1	202197161	rs3795598	C	T	295.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:81,22:0.21:103
chr1	202266547	rs788827	C	T	436.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.195;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=11.136;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.54;ReadPosRankSum=0.724;SOR=1.671;set=HC	GT:AD:AF:DP	0/1:139,33:0.19:172
chr1	202266607	rs788826	C	T	981.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.373;ClippingRankSum=0.000;DB;DP=257;ExcessHet=3.0103;FS=1.757;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.87;ReadPosRankSum=-1.171;SOR=0.842;set=HC	GT:AD:AF:DP	0/1:189,65:0.26:254
chr1	202274936	rs705762	T	C	974.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.281;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=1.258;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.54;ReadPosRankSum=-1.842;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:119,57:0.32:176
chr1	202276494	rs896551	C	T	1850.77	.	AC=1;AF=0.500;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	0/1:229,110:0.32:339
chr1	202287206	rs788795	T	C	1551.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.954;ClippingRankSum=0.000;DB;DP=386;ExcessHet=3.0103;FS=0.879;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.18;ReadPosRankSum=0.192;SOR=0.640;set=HC	GT:AD:AF:DP	0/1:270,101:0.27:371
chr1	202287537	rs788794	G	A	2105.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:191,109:0.36:300
chr1	202287813	rs788793	T	C	2829.77	.	AC=1;AF=0.500;AN=2;DB;DP=570;set=Intersection	GT:AD:AF:DP	0/1:398,165:0.29:563
chr1	202318316	rs930734	A	C	5255.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:1,203:1.00:204
chr1	202386075	rs2843413	T	C	5139.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr1	202457784	rs3820374	T	A	2868.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr1	202509397	.	T	C	2911.77	.	AC=1;AF=0.500;AN=2;DP=512;set=Intersection	GT:AD:AF:DP	0/1:334,160:0.32:494
chr1	202531741	rs2249811	C	T	3453.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr1	202536848	rs2292489	C	T	3979.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr1	202565747	rs138552846	AAAAC	A	1453.73	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:21,37:0.64:58
chr1	202572105	rs55968420	GCC	G	20003.73	.	AC=2;AF=1.00;AN=2;DB;DP=512;set=Intersection	GT:AD:AF:DP	1/1:2,491:1.00:493
chr1	202574784	rs1968583	G	A	1636.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.455;ClippingRankSum=0.000;DB;DP=372;ExcessHet=3.0103;FS=13.465;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.878;QD=4.51;ReadPosRankSum=-0.636;SOR=1.285;set=HC	GT:AD:AF:DP	0/1:263,100:0.28:363
chr1	202703053	rs4310498	G	A	3767.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr1	202705455	rs1141109	G	C	2273.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr1	202715244	rs3216061	G	GA	5192.73	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr1	202715284	rs1141108	G	A	10273.77	.	AC=2;AF=1.00;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	1/1:1,389:1.00:390
chr1	202718028	rs1892163	A	G	2724.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr1	202718202	rs1892164	G	A	15085.77	.	AC=2;AF=1.00;AN=2;DB;DP=576;set=Intersection	GT:AD:AF:DP	1/1:0,570:1.00:570
chr1	202722277	rs4950742	G	A	1036.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	202731986	rs140328663	C	CCTCAA	2107.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr1	202733238	rs3196669	C	T	3477.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.55;SOR=0.739;set=HC	GT:AD:AF:DP	1/1:0,131:1.00:131
chr1	202735634	.	TA	T	59.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.976;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=0.029;QD=0.89;ReadPosRankSum=0.584;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:50,17:0.25:67
chr1	202735751	rs12140729	T	C	1705.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.15;QD=24.72;SOR=0.844;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr1	202827191	rs6663182	G	A	705.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:72,39:0.35:111
chr1	202827398	rs6687459	A	G	580.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.198;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=1.923;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.75;ReadPosRankSum=-0.284;SOR=0.943;set=HC	GT:AD:AF:DP	0/1:70,31:0.31:101
chr1	202887295	rs2275734	G	A	10766.77	.	AC=2;AF=1.00;AN=2;DB;DP=409;MQ=59.97;set=Intersection	GT:AD:AF:DP	1/1:0,403:1.00:403
chr1	202889207	rs7520522	T	C	680.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	202897431	rs10800882	A	G	1021.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.28;QD=27.62;SOR=3.442;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	202934764	rs56932949	TC	T	168.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.452;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=3.220;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.82;ReadPosRankSum=0.416;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:23,12:0.34:35
chr1	202978032	rs1418444	C	G	54.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.145;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=5.122;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.37;ReadPosRankSum=1.184;SOR=2.350;set=HC	GT:AD:AF:DP	0/1:34,6:0.15:40
chr1	202987770	rs782788	T	C	666.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:81,39:0.33:120
chr1	202987796	rs782787	G	A	611.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:55,33:0.38:88
chr1	203003870	rs782800	G	A	802.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:89,45:0.34:134
chr1	203004627	rs5780134	A	AC	3885.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.026;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=31.09;ReadPosRankSum=-0.430;SOR=0.236;set=HC	GT:AD:AF:DP	1/1:1,124:0.99:125
chr1	203006243	rs782805	A	G	14681.77	.	AC=2;AF=1.00;AN=2;DB;DP=570;set=Intersection	GT:AD:AF:DP	1/1:0,567:1.00:567
chr1	203008174	rs61821060	G	C	13113.77	.	AC=2;AF=1.00;AN=2;DB;DP=492;set=Intersection	GT:AD:AF:DP	1/1:0,482:1.00:482
chr1	203008286	rs10920553	C	G	8501.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:2,320:0.99:322
chr1	203012661	rs372177187	CGT	C	105.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.686;ClippingRankSum=0.000;DB;DP=219;ExcessHet=3.0103;FS=0.992;MLEAC=1;MLEAF=0.500;MQ=59.83;MQRankSum=-4.057;QD=0.62;ReadPosRankSum=1.009;SOR=0.876;set=HC	GT:AD:AF:DP	0/1:149,21:0.12:170
chr1	203012705	rs7547566	C	G	3099.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr1	203012906	rs4950908	G	A	3805.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr1	203023122	rs2291691	A	C	6601.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:1,240:1.00:241
chr1	203023240	rs10635298	G	GGC	3488.73	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr1	203025096	rs3079429	CT	C	107.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.090;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=4.158;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.20;ReadPosRankSum=-0.571;SOR=1.773;set=HC	GT:AD:AF:DP	0/1:32,17:0.35:49
chr1	203025209	rs11590950	G	C	9734.77	.	AC=2;AF=1.00;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	1/1:2,369:0.99:371
chr1	203028711	rs4590732	C	G	653.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	203030685	rs2270543	T	C	1183.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr1	203032922	rs1416262	C	T	4501.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr1	203036757	rs2275354	T	C	4715.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:1,176:0.99:177
chr1	203040673	rs9803710	A	G	777.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	203040740	rs11583155	T	C	2136.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr1	203040816	rs2270540	G	C	4528.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr1	203053768	rs903356	T	C	7805.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr1	203053889	rs12143972	C	T	359.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.157;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.56;ReadPosRankSum=-1.006;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:77,24:0.24:101
chr1	203054651	rs61745017	G	A	1183.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:144,65:0.31:209
chr1	203055101	rs4950877	A	G	3505.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:93,154:0.62:247
chr1	203137784	rs35823777	A	ACT	11437.73	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr1	203143395	rs3737872	T	C	691.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	203148633	rs4950927	A	G	5622.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:2,213:0.99:215
chr1	203152801	rs880633	T	C	5070.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr1	203153555	rs12128727	C	T	2399.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr1	203153634	rs2071579	C	G	9069.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:0,330:1.00:330
chr1	203154532	rs1538372	A	G	1979.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr1	203155882	rs4950928	G	C	3207.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr1	203186666	rs41308417	C	G	418.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.695;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=10.359;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.36;ReadPosRankSum=-2.265;SOR=0.184;set=HC	GT:AD:AF:DP	0/1:69,27:0.28:96
chr1	203311736	rs1891180	T	C	943.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:75,51:0.40:126
chr1	203317162	rs7543148	C	T	6021.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr1	203455902	rs9439	A	C	6385.77	.	AC=1;AF=0.500;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	0/1:113,280:0.71:393
chr1	203652444	rs1419114	A	G	4618.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr1	203667409	rs2228445	T	C	6798.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr1	203667536	rs6676272	A	G	1751.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;MQ=60.09;set=Intersection	GT:AD:AF:DP	0/1:44,74:0.63:118
chr1	203667577	rs139986068	TA	T	449.73	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:43,24:0.36:67
chr1	203670128	rs3820197	A	T	356.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:16,19:0.54:35
chr1	203670179	rs3766752	A	G	151.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:3,6:0.67:9
chr1	203671125	rs78023704	A	T	1555.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.591;ClippingRankSum=0.000;DB;DP=306;ExcessHet=3.0103;FS=5.773;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.13;ReadPosRankSum=-1.666;SOR=1.058;set=HC	GT:AD:AF:DP	0/1:221,82:0.27:303
chr1	203677250	rs3753036	G	A	1970.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:202,108:0.35:310
chr1	203679934	rs2032018	A	G	3640.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr1	203689936	rs4951112	C	G	268.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:48,16:0.25:64
chr1	203698627	rs2365862	C	T	51.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.98;ReadPosRankSum=-0.297;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:9,4:0.31:13
chr1	203698672	rs5780193	CA	C	49.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.201;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=3.565;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.84;ReadPosRankSum=0.741;SOR=1.163;set=HC	GT:AD:AF:DP	0/1:16,11:0.41:27
chr1	203740615	rs3737976	T	C	3465.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:61,151:0.71:212
chr1	203741368	rs3737973	C	A	621.89	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:3,25:0.89:28
chr1	203742915	rs6697274	G	A	469.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:20,23:0.53:43
chr1	203743122	rs3820194	G	A	2505.77	.	AC=1;AF=0.500;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	0/1:274,133:0.33:407
chr1	203743653	rs3766748	C	T	654.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.878;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=3.159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.74;ReadPosRankSum=0.188;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:133,42:0.24:175
chr1	203767822	rs6697388	T	G	2731.77	.	AC=1;AF=0.500;AN=2;DB;DP=501;set=Intersection	GT:AD:AF:DP	0/1:338,156:0.32:494
chr1	203768328	rs7552670	T	C	9260.77	.	AC=1;AF=0.500;AN=2;DB;DP=583;set=Intersection	GT:AD:AF:DP	0/1:186,392:0.68:578
chr1	203769532	rs7540041	G	A	1363.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:26,61:0.70:87
chr1	203786152	rs7555435	A	C	223.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:19,12:0.39:31
chr1	203787700	rs4951260	T	C	2928.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr1	203799343	rs12239438	C	T	1851.77	.	AC=1;AF=0.500;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	0/1:223,110:0.33:333
chr1	203803016	rs6694647	A	G	2548.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr1	203807233	rs12078328	T	C	402.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.703;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.63;ReadPosRankSum=0.815;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:118,35:0.23:153
chr1	203807273	rs34947847	A	G	240.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.952;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.38;ReadPosRankSum=-1.561;SOR=0.574;set=HC	GT:AD:AF:DP	0/1:79,22:0.22:101
chr1	203809380	rs13375025	G	A	462.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.116;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.49;ReadPosRankSum=-1.065;SOR=0.742;set=HC	GT:AD:AF:DP	0/1:72,31:0.30:103
chr1	203817549	rs12086293	T	C	361.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:25,17:0.40:42
chr1	203817620	rs12078932	G	C	32.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.471;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=8.475;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.42;ReadPosRankSum=-0.889;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:18,5:0.22:23
chr1	203819203	rs11240605	A	G	626.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:87,38:0.30:125
chr1	203821200	rs7512877	G	A	2687.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr1	203831261	rs11240609	G	A	1443.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:167,82:0.33:249
chr1	203832964	rs71631773	A	G	2285.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.611;ClippingRankSum=0.000;DB;DP=479;ExcessHet=3.0103;FS=1.214;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=-1.133;QD=4.79;ReadPosRankSum=2.097;SOR=0.617;set=HC	GT:AD:AF:DP	0/1:334,143:0.30:477
chr1	203833062	rs142737263	CTCTG	C	3101.73	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:28,78:0.74:106
chr1	204006095	rs41264273	A	G	6511.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:3,231:0.99:234
chr1	204006538	rs4951291	T	C	729.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	204006597	rs4951039	G	A	1331.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	204010389	rs10437107	G	T	5659.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:1,201:1.00:202
chr1	204081655	rs374243810	A	ACACACACACT	2141.73	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=65.12;QD=34.54;SOR=2.200;set=HC	GT:AD:AF:DP	1/1:3,59:0.95:62
chr1	204081892	rs2250538	C	T	420.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:28,19:0.40:47
chr1	204082002	rs2293336	C	T	1748.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:36,77:0.68:113
chr1	204103618	rs2293335	G	A	4335.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr1	204110334	rs10793755	A	G	11544.77	.	AC=2;AF=1.00;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	1/1:0,446:1.00:446
chr1	204115934	rs2293337	C	T	1479.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:188,85:0.31:273
chr1	204116452	rs45528645	G	A	1493.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:32,59:0.65:91
chr1	204124865	rs2368564	C	T	446.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.399;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.92;ReadPosRankSum=0.626;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:119,34:0.22:153
chr1	204125272	rs3795574	C	A	1175.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:137,68:0.33:205
chr1	204125987	rs3730103	T	C	300.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:42,16:0.28:58
chr1	204129671	rs5707	A	C	2254.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:55,97:0.64:152
chr1	204159544	.	C	CA	378	.	AC=1;AF=0.500;AN=2;BRF=0.58;FR=0.5000;HP=5;HapScore=4;MGOF=45;MMLQ=24;MQ=56.57;NF=6;NR=4;PP=378;QD=40.0;SC=ACGTCCCCGCCCCCCGCCCCC;SbPval=0.45;Source=Platypus;TC=15;TCF=10;TCR=5;TR=10;WE=204159557;WS=204159532;set=Platypus	GT:AD:AF:DP	1/0:5,10:0.67:15
chr1	204159611	rs71745629	CT	C	2135.73	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:22,63:0.74:85
chr1	204159787	rs4889	G	C	3623.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:73,158:0.68:231
chr1	204159922	rs35431622	T	C	1182.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:167,70:0.30:237
chr1	204198209	rs3795571	A	G	1898.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:36,74:0.67:110
chr1	204199614	rs10900562	C	T	6360.77	.	AC=1;AF=0.500;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	0/1:123,267:0.68:390
chr1	204210997	rs72749769	G	A	2499.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:79,116:0.59:195
chr1	204214975	rs66602475	TACACAC	T,TACACACAC	2825.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=155;set=Intersection	GT:AF:DP	1/2:0.81,0.15:94
chr1	204216410	rs4951329	C	T	2594.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:71,114:0.62:185
chr1	204216468	rs4512713	C	T	3778.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:94,169:0.64:263
chr1	204216601	rs4288652	G	A	2411.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:76,118:0.61:194
chr1	204218478	rs190237162	G	A	1191.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:164,69:0.30:233
chr1	204219821	rs45492294	C	T	2508.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:78,110:0.59:188
chr1	204219850	rs4951331	G	A	1544.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:57,70:0.55:127
chr1	204234222	rs4076020	T	C	3564.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.176;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=4.387;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.93;ReadPosRankSum=0.550;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:51,92:0.64:143
chr1	204234225	rs4073136	G	A	3534.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.569;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=3.519;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.38;ReadPosRankSum=0.917;SOR=1.071;set=HC	GT:AD:AF:DP	0/1:48,86:0.64:134
chr1	204237416	rs10900571	C	T	2939.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:65,134:0.67:199
chr1	204379617	rs3014626	T	C	8102.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr1	204409281	rs3014631	C	G	6365.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr1	204413297	rs2292459	C	T	7695.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.27;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,170:1.00:170
chr1	204413297	.	CGG	TGA	2947	.	AC=2;AF=1.00;AN=2;BRF=0.38;FR=1.0000;HP=3;HapScore=1;MGOF=2;MMLQ=24;MQ=60.0;NF=64;NR=62;PP=2947;QD=20;SC=GGGCCTGTTTCGGAGAAAGGG;SbPval=0.55;Source=Platypus;TC=134;TCF=68;TCR=66;TR=126;WE=204413307;WS=204413287;set=Platypus	GT:AD:AF:DP	1/1:8,126:0.94:134
chr1	204413299	rs2292460	G	A	7695.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.98;SOR=0.775;set=HC	GT:AD:AF:DP	1/1:0,175:1.00:175
chr1	204418889	rs2999492	C	T	568.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	204418939	rs3014637	C	T	1828.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr1	204426052	rs2999490	A	C	504.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.55;QD=38.83;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	204429212	rs5013460	AT	TG	1655.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.57;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	204429215	rs5013458	TA	AG	1591.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=49.74;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	204429285	rs2999485	A	G	507.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	204429838	rs2271414	C	G	3339.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr1	204433093	rs2271415	A	C	2419.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr1	204433511	rs11455991	T	TC	2712.73	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr1	204434277	rs2942149	T	C	2325.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr1	204438334	rs1124777	C	T	9520.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:0,351:1.00:351
chr1	204438643	rs1553921	G	T	6629.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:1,256:1.00:257
chr1	204494756	.	G	GT	476.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.042;ClippingRankSum=0.000;DP=301;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=2.447;QD=2.12;ReadPosRankSum=-0.983;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:165,60:0.27:225
chr1	204587240	rs3747632	G	A	2527.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:59,107:0.64:166
chr1	204915393	rs2595960	A	G	960.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:90,54:0.38:144
chr1	204921258	rs12141283	A	G	2341.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.170;ClippingRankSum=0.000;DB;DP=467;ExcessHet=3.0103;FS=1.939;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.10;ReadPosRankSum=1.160;SOR=0.541;set=HC	GT:AD:AF:DP	0/1:321,138:0.30:459
chr1	204942591	rs149576580	C	T	2366.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:53,109:0.67:162
chr1	204943285	rs2595945	A	T	4170.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr1	204943947	rs2246662	C	A	4797.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr1	204943991	rs2246661	CA	TG	5785.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr1	204966428	rs2802808	C	G	5028.77	.	AC=1;AF=0.500;AN=2;DB;DP=743;set=Intersection	GT:AD:AF:DP	0/1:467,265:0.36:732
chr1	204966690	rs2794858	G	A	7614.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr1	204966749	rs2595944	A	G	3657.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr1	204978445	rs3839001	G	GCTT	7140.73	.	AC=1;AF=0.500;AN=2;DB;DP=680;set=Intersection	GT:AD:AF:DP	0/1:464,205:0.31:669
chr1	204978533	rs1530745	A	G	16711.77	.	AC=2;AF=1.00;AN=2;DB;DP=626;set=Intersection	GT:AD:AF:DP	1/1:0,625:1.00:625
chr1	204978643	rs1530744	C	A	13574.77	.	AC=1;AF=0.500;AN=2;DB;DP=915;set=Intersection	GT:AD:AF:DP	0/1:306,603:0.66:909
chr1	204978704	rs55678495	G	A	13506.77	.	AC=1;AF=0.500;AN=2;DB;DP=895;set=Intersection	GT:AD:AF:DP	0/1:293,596:0.67:889
chr1	205028581	rs2305278	C	G	908.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:86,43:0.33:129
chr1	205028883	rs35182846	CAG	C	2329.73	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:26,59:0.69:85
chr1	205030862	rs41264869	C	T	309.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:20,14:0.41:34
chr1	205031116	rs2229866	C	T	2709.77	.	AC=1;AF=0.500;AN=2;DB;DP=512;set=Intersection	GT:AD:AF:DP	0/1:346,152:0.31:498
chr1	205031744	rs2242001	G	A	1506.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:200,89:0.31:289
chr1	205031769	rs2242000	G	A	1605.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:168,89:0.35:257
chr1	205033283	rs1470637	G	A	145.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:26,9:0.26:35
chr1	205033374	rs2305277	T	C	1348.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:117,70:0.37:187
chr1	205034488	rs4460698	A	G	877.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:83,41:0.33:124
chr1	205034852	rs143128501	A	ATGGCCTGCTGCACTGGTCAGGGCCGGTGGTC	2199.73	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:31,28:0.47:59
chr1	205038731	rs2305275	C	T	2353.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr1	205039288	rs12134724	T	C	2508.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:39,99:0.72:138
chr1	205039295	rs56283998	A	C	423.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:87,30:0.26:117
chr1	205040943	rs12117194	C	G	835.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:5,31:0.86:36
chr1	205041015	rs11240349	G	A	1987.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:29,86:0.75:115
chr1	205041542	rs3903399	T	C	332.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:43,18:0.30:61
chr1	205052939	rs4950979	G	A	6723.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr1	205053219	rs4951168	C	T	7619.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:1,281:1.00:282
chr1	205063949	rs3738154	C	T	876.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:20,37:0.65:57
chr1	205065733	rs11577406	G	T	487.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:14,20:0.59:34
chr1	205065927	rs35927235	A	G	4123.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:87,181:0.68:268
chr1	205067972	rs373788683	CA	C	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.908;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.79;ReadPosRankSum=1.177;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:4,7:0.64:11
chr1	205074424	rs3738155	C	T	406.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:21,19:0.47:40
chr1	205083865	rs11240360	T	C	1171.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:25,51:0.67:76
chr1	205084120	rs7515178	G	A	1616.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:45,74:0.62:119
chr1	205085358	rs12025836	T	C	138.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:12,7:0.37:19
chr1	205090885	rs61822619	C	G	7417.77	.	AC=1;AF=0.500;AN=2;DB;DP=513;set=Intersection	GT:AD:AF:DP	0/1:181,326:0.64:507
chr1	205129319	rs1062715	G	A	709.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:98,42:0.30:140
chr1	205130413	rs3851294	A	G	2771.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr1	205225457	rs1172147	G	A	1836.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:53,84:0.61:137
chr1	205240913	rs9659978	A	G	1099.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	205273142	rs41264881	G	C	6898.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr1	205274174	rs10793728	A	G	726.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	205275206	rs4951195	AG	TT	4812.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr1	205275421	rs4951197	A	G	3344.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr1	205312767	rs7526603	G	T	2446.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:1,88:0.99:89
chr1	205325609	rs2298250	C	A	10533.77	.	AC=2;AF=1.00;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	1/1:0,403:1.00:403
chr1	205385498	rs6688045	C	T	4145.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:99,188:0.66:287
chr1	205417586	rs74141216	C	T	2260.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr1	205492756	rs7529442	A	G	7154.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr1	205495392	rs2297837	A	G	9144.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:2,318:0.99:320
chr1	205495976	rs1544154	A	G	9297.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	1/1:0,351:1.00:351
chr1	205553346	.	A	AT	81.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.123;ClippingRankSum=0.000;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.242;QD=1.99;ReadPosRankSum=0.281;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:28,13:0.32:41
chr1	205561493	rs201736762	GCT	G	68.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.404;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.91;ReadPosRankSum=-0.978;SOR=0.567;set=HC	GT:AD:AF:DP	0/1:24,12:0.33:36
chr1	205561495	rs143503253	TC	T	208.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.132;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=4.077;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.80;ReadPosRankSum=0.914;SOR=1.721;set=HC	GT:AD:AF:DP	0/1:17,19:0.53:36
chr1	205561511	rs6593956	T	A	1572.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.106;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=5.310;MLEAC=2;MLEAF=1.000;MQ=59.97;MQRankSum=-0.118;QD=41.39;ReadPosRankSum=-0.066;SOR=3.383;set=HC	GT:AD:AF:DP	1/1:2,36:0.95:38
chr1	205568442	rs2282452	G	A	2902.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr1	205600653	rs6593957	C	T	356.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	205600829	.	C	G	681.77	.	AC=1;AF=0.500;AN=2;DP=50;set=Intersection	GT:AD:AF:DP	0/1:18,32:0.64:50
chr1	205615947	rs4951250	C	A	2157.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.351;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.09;MQRankSum=0.321;QD=20.36;ReadPosRankSum=-0.856;SOR=0.580;set=HC	GT:AD:AF:DP	1/1:8,98:0.92:106
chr1	205632610	rs145880670	G	T	1312.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:167,72:0.30:239
chr1	205686523	rs34305872	G	GT	449.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.960;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=0.698;QD=8.99;ReadPosRankSum=-0.396;SOR=0.617;set=HC	GT:AD:AF:DP	0/1:17,33:0.66:50
chr1	205687348	rs71709139	CTTTTTTCTTT	C	496.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.478;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.843;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.91;ReadPosRankSum=2.755;SOR=0.579;set=HC	GT:AD:AF:DP	0/1:45,39:0.46:84
chr1	205689807	rs823094	T	G	2602.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:54,107:0.66:161
chr1	205696671	rs1772147	G	A	1637.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr1	205739396	rs823139	T	G	2229.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:56,95:0.63:151
chr1	205740668	rs41302139	G	C	588.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:79,33:0.29:112
chr1	205740877	rs147585480	C	A	201.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:21,11:0.34:32
chr1	205744138	rs708725	G	T	5218.77	.	AC=1;AF=0.500;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	0/1:110,233:0.68:343
chr1	205764640	rs823156	G	A	4060.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:1,151:0.99:152
chr1	205766159	rs5780304	CA	C	8543.73	.	AC=2;AF=1.00;AN=2;DB;DP=261;MQ=60.04;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr1	205767885	rs708727	G	A	7462.77	.	AC=1;AF=0.500;AN=2;DB;DP=510;set=Intersection	GT:AD:AF:DP	0/1:170,330:0.66:500
chr1	205801872	rs1361754	A	G	4165.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:115,190:0.62:305
chr1	205809642	rs10900525	G	C	150.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr1	205811055	rs74143854	C	T	481.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:74,30:0.29:104
chr1	205811828	rs4951025	A	T	2154.77	.	AC=1;AF=0.500;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	0/1:278,127:0.31:405
chr1	205814497	rs1891460	T	C	11649.77	.	AC=2;AF=1.00;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	1/1:2,441:1.00:443
chr1	205886381	rs11240591	C	T	1513.77	.	AC=1;AF=0.500;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	0/1:227,94:0.29:321
chr1	205888143	rs11240593	G	C	1337.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:128,72:0.36:200
chr1	205890679	rs12759719	T	C	6622.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr1	205892411	rs3811427	T	C	1178.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.366;ClippingRankSum=0.000;DB;DP=300;ExcessHet=3.0103;FS=0.489;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.96;ReadPosRankSum=-0.761;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:224,74:0.25:298
chr1	205892415	rs3811426	C	T	2417.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.503;ClippingRankSum=0.000;DB;DP=302;ExcessHet=3.0103;FS=0.485;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.06;ReadPosRankSum=-1.265;SOR=0.761;set=HC	GT:AD:AF:DP	0/1:224,76:0.25:300
chr1	205893699	rs9438402	T	C	811.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:125,51:0.29:176
chr1	205893753	rs34907090	AT	A	236.73	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:48,19:0.28:67
chr1	205896235	rs11240594	G	A	415.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:41,22:0.35:63
chr1	205896475	rs7366204	C	T	3883.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr1	205896948	rs3811424	A	G	513.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:18,21:0.54:39
chr1	205897876	rs12568779	C	T	1826.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:191,102:0.35:293
chr1	205899311	rs9438405	T	A	2385.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr1	205901287	rs11240596	T	A	1577.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr1	205901788	rs3811423	G	T	527.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	206224412	rs35608965	T	C	3244.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.027;ClippingRankSum=0.000;DB;DP=662;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.93;ReadPosRankSum=-0.398;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:461,197:0.30:658
chr1	206225011	rs33990840	G	C	2492.77	.	AC=1;AF=0.500;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	0/1:267,139:0.34:406
chr1	206231151	rs33976516	C	G	1618.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;MQ=60.04;set=Intersection	GT:AD:AF:DP	0/1:159,87:0.35:246
chr1	206231259	rs33985287	A	G	302.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:40,18:0.31:58
chr1	206317394	rs56214525	C	G	380.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:4,14:0.78:18
chr1	206317568	rs73074812	G	A	2758.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:84,128:0.60:212
chr1	206319119	rs57621203	A	G	14981.77	.	AC=1;AF=0.500;AN=2;DB;DP=959;set=Intersection	GT:AD:AF:DP	0/1:292,657:0.69:949
chr1	206327510	rs61742539	T	C	3883.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:79,168:0.68:247
chr1	206328647	rs28694519	G	C	1512.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:22,57:0.72:79
chr1	206328803	rs41302235	T	C	7294.77	.	AC=1;AF=0.500;AN=2;DB;DP=487;set=Intersection	GT:AD:AF:DP	0/1:159,322:0.67:481
chr1	206516159	rs199928990	C	T	609.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.947;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=40.00;MQRankSum=0.000;QD=16.48;ReadPosRankSum=0.992;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:14,23:0.62:37
chr1	206516261	rs201036189	C	T	2101.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.826;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=1.210;MLEAC=1;MLEAF=0.500;MQ=49.26;MQRankSum=0.709;QD=11.00;ReadPosRankSum=-0.888;SOR=0.600;set=HC	GT:AD:AF:DP	0/1:94,97:0.51:191
chr1	206566860	rs11361942	TA	T	1282.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.220;ClippingRankSum=0.000;DB;DP=232;ExcessHet=3.0103;FS=17.422;MLEAC=1;MLEAF=0.500;MQ=52.05;MQRankSum=-11.379;QD=5.68;ReadPosRankSum=-0.726;SOR=1.947;set=HC	GT:AD:AF:DP	0/1:127,99:0.44:226
chr1	206566903	rs2987927	G	A	550.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=12.802;ClippingRankSum=0.000;DB;DP=572;ExcessHet=3.0103;FS=25.036;MLEAC=1;MLEAF=0.500;MQ=51.75;MQRankSum=-11.013;QD=0.97;ReadPosRankSum=0.347;SOR=3.436;set=HC	GT:AD:AF:DP	0/1:498,72:0.13:570
chr1	206566904	rs2919105	T	C	8866.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.792;ClippingRankSum=0.000;DB;DP=578;ExcessHet=3.0103;FS=6.841;MLEAC=1;MLEAF=0.500;MQ=51.66;MQRankSum=-20.653;QD=15.39;ReadPosRankSum=-1.370;SOR=1.174;set=HC	GT:AD:AF:DP	0/1:246,330:0.57:576
chr1	206567100	rs2480377	C	T	5845.77	.	AC=1;AF=0.500;AN=2;DB;DP=775;set=Intersection	GT:AD:AF:DP	0/1:482,292:0.38:774
chr1	206567165	rs2480376	T	A	421.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.877;ClippingRankSum=0.000;DB;DP=246;ExcessHet=3.0103;FS=5.179;MLEAC=1;MLEAF=0.500;MQ=59.13;MQRankSum=-1.306;QD=1.71;ReadPosRankSum=0.978;SOR=0.291;set=HC	GT:AD:AF:DP	0/1:206,40:0.16:246
chr1	206579936	rs201644221	A	G	160.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.941;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=1.413;MLEAC=1;MLEAF=0.500;MQ=47.62;MQRankSum=-4.110;QD=3.49;ReadPosRankSum=0.949;SOR=1.056;set=HC	GT:AD:AF:DP	0/1:35,11:0.24:46
chr1	206623685	rs12725078	G	T	5464.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr1	206623866	rs11809494	C	T	2194.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr1	206626607	rs11120575	G	A	5195.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr1	206626779	rs2483059	A	G	3042.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr1	206626828	rs2483058	C	G	1439.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	206631518	rs10864212	G	T	1535.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	206631532	rs12565311	T	A	1921.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr1	206646427	rs1930437	C	A	2746.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr1	206647742	rs1539242	A	G	8668.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr1	206647787	rs1539243	T	C	8441.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chr1	206648378	rs1059704	G	A	1289.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	206651107	rs2297545	G	A	980.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:122,58:0.32:180
chr1	206651350	rs2297543	C	T	418.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:36,23:0.39:59
chr1	206665896	rs2336940	C	G	6771.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr1	206666734	rs12026566	T	G	954.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:139,56:0.29:195
chr1	206667441	rs2184030	G	A	3381.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:91,144:0.61:235
chr1	206669465	rs3748022	C	T	838.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.495;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=2.020;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.79;ReadPosRankSum=2.447;SOR=0.544;set=HC	GT:AD:AF:DP	0/1:120,55:0.31:175
chr1	206670827	rs12754274	G	T	2700.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:72,115:0.61:187
chr1	206680983	rs2095124	A	C	7830.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr1	206758077	rs4418597	T	A	4471.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr1	206766799	.	GGAGA	G	73.73	.	AC=1;AF=0.500;AN=2;DP=10;set=Intersection	GT:AD:AF:DP	0/1:5,3:0.38:8
chr1	206766817	.	A	G	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.732;ClippingRankSum=-0.000;DP=10;ExcessHet=3.0103;FS=3.802;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.86;ReadPosRankSum=2.200;SOR=0.078;set=HC	GT:AD:AF:DP	0/1:7,2:0.22:9
chr1	206766819	rs138574590	AGAGC	A	66.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.712;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.41;ReadPosRankSum=-2.655;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:5,4:0.44:9
chr1	206766845	rs371749910	AGTGTGTGTGTGC	A	267.94	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.431;ClippingRankSum=-0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.40;ReadPosRankSum=0.282;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:11,9:0.45:20
chr1	206769047	rs11584983	T	C	824.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:80,45:0.36:125
chr1	206770283	rs11284613	AC	A	1049.73	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:13,40:0.75:53
chr1	206772194	rs373767533	ACT	A	1975.73	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:20,50:0.71:70
chr1	206772753	rs4845116	A	G	1260.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	206773659	rs6662929	A	G	8871.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	1/1:0,341:1.00:341
chr1	206776200	rs6668054	C	T	2164.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.10;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	206776203	rs6675741	T	C	2188.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.09;SOR=2.393;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr1	206778642	rs4077413	A	C	152.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:20,9:0.31:29
chr1	206810946	rs17013271	C	T	1953.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:42,73:0.63:115
chr1	206822348	rs192975758	T	G	663.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:72,37:0.34:109
chr1	206904464	rs10863805	C	T	1557.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:124,77:0.38:201
chr1	206904644	rs58152125	C	CGT	1365.73	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:38,62:0.62:100
chr1	206905043	rs4073250	C	T	6920.77	.	AC=1;AF=0.500;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	0/1:157,294:0.65:451
chr1	206943351	rs3024494	T	C	430.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	206944233	rs1554286	A	G	3551.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:86,149:0.63:235
chr1	206944645	rs1518111	T	C	791.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:17,29:0.63:46
chr1	206944861	rs1518110	A	C	987.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:24,40:0.62:64
chr1	206944952	rs3021094	T	G	75.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.690;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=5.051;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.74;ReadPosRankSum=-1.373;SOR=0.042;set=HC	GT:AD:AF:DP	0/1:11,5:0.31:16
chr1	207009910	rs2243170	T	C	100.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:22,7:0.24:29
chr1	207015957	rs2243191	T	C	648.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:127,43:0.25:170
chr1	207016125	rs1798	C	G	80.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.025;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=4.771;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.38;ReadPosRankSum=0.554;SOR=0.050;set=HC	GT:AD:AF:DP	0/1:10,5:0.33:15
chr1	207040659	rs2232360	G	A	385.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:66,25:0.27:91
chr1	207072959	rs1150255	C	T	538.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:6,23:0.79:29
chr1	207074905	rs1150258	T	C	4156.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:94,186:0.66:280
chr1	207075171	rs291107	T	C	1566.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:30,58:0.66:88
chr1	207086194	rs749860	T	G	137.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:16,9:0.36:25
chr1	207086969	rs291083	A	G	537.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:15,20:0.57:35
chr1	207087435	rs167082	C	T	3034.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:68,128:0.65:196
chr1	207091073	rs79543561	T	C	154.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:44,12:0.21:56
chr1	207091138	rs36032902	A	AT	148.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.676;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=2.944;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=0.000;QD=2.92;ReadPosRankSum=-1.201;SOR=1.348;set=HC	GT:AD:AF:DP	0/1:33,18:0.35:51
chr1	207108191	rs72570603	CAT	C	1871.73	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr1	207109116	rs2275531	C	T	9265.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	1/1:0,350:1.00:350
chr1	207109167	rs6695632	G	A	5247.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr1	207110363	rs748140	A	G	2455.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:1,83:0.99:84
chr1	207110936	rs291096	T	C	6369.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr1	207111257	rs291095	G	T	331.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	207113755	rs2007272	G	C	1344.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	207132345	rs7556372	A	G	6250.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:1,232:1.00:233
chr1	207134620	.	TG	CA	1992.77	.	AC=1;AF=0.500;AN=2;DP=70;JOINED;set=Intersection	GT:AD:AF:DP	0/1:19,50:0.72:69
chr1	207135389	rs12121714	C	T	589.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:11,22:0.67:33
chr1	207135546	rs1572808	G	A	3428.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:81,152:0.65:233
chr1	207135991	rs11119925	C	T	502.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:13,20:0.61:33
chr1	207139046	rs11576146	A	G	64.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:22,5:0.19:27
chr1	207139362	rs12569037	C	G	191.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:19,10:0.34:29
chr1	207140440	rs11119933	C	T	906.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:82,48:0.37:130
chr1	207142507	rs17018488	T	C	94.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:10,5:0.33:15
chr1	207143296	rs1890864	C	T	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.748;ClippingRankSum=0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.83;ReadPosRankSum=0.289;SOR=0.124;set=HC	GT:AD:AF:DP	0/1:10,3:0.23:13
chr1	207143422	rs1856746	A	G	3667.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr1	207143550	rs1340232	C	T	1200.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:129,68:0.35:197
chr1	207195779	rs2842726	A	G	6274.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr1	207237233	.	GGT	G	283.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.009;ClippingRankSum=0.000;DP=177;ExcessHet=3.0103;FS=1.345;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=0.000;QD=2.63;ReadPosRankSum=-0.675;SOR=0.373;set=HC	GT:AD:AF:DP	0/1:81,27:0.25:108
chr1	207241440	rs4030464	AGT	A	204.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.717;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.74;ReadPosRankSum=0.853;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:98,20:0.17:118
chr1	207243851	rs923109	A	G	716.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:13,32:0.71:45
chr1	207269858	rs3813948	T	C	2600.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:34,106:0.76:140
chr1	207269919	rs8942	C	T	3165.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:69,140:0.67:209
chr1	207288897	rs12031629	T	C	878.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.581;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=2.406;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.19;ReadPosRankSum=0.306;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:95,47:0.33:142
chr1	207297484	rs2842707	G	C	1053.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:63,47:0.43:110
chr1	207297680	rs1126618	T	C	4200.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:104,197:0.65:301
chr1	207300259	rs2491393	A	G	2586.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:56,116:0.67:172
chr1	207304900	rs4844573	T	C	4148.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:88,179:0.67:267
chr1	207500293	rs4844591	C	T	2505.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr1	207504669	rs2184476	G	A	2404.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr1	207510289	rs2490257	T	C	16990.77	.	AC=2;AF=1.00;AN=2;DB;DP=592;set=Intersection	GT:AD:AF:DP	1/1:0,584:1.00:584
chr1	207510548	rs10746462	A	G	4553.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr1	207510596	rs10746463	G	A	9706.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	1/1:1,352:1.00:353
chr1	207512577	rs10641442	T	TTAA	901.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	207520376	rs2404781	T	C	656.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:70,34:0.33:104
chr1	207520610	rs368894631	AT	A	67.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.817;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=2.516;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.80;ReadPosRankSum=1.159;SOR=1.055;set=HC	GT:AD:AF:DP	0/1:65,20:0.24:85
chr1	207527285	rs11120753	G	A	396.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:54,24:0.31:78
chr1	207532861	rs56253023	C	CT,CTTT	1989.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.177;ClippingRankSum=0.000;DB;DP=190;ExcessHet=3.0103;FS=5.805;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.28;MQRankSum=0.890;QD=11.84;ReadPosRankSum=-1.020;SOR=1.137;set=HC	GT:AD:AF:DP	1/2:42,42,84:0.25,0.50:168
chr1	207643949	rs10863322	G	A	1405.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:1,45:0.98:46
chr1	207653364	rs17618	A	G	3125.77	.	AC=1;AF=0.500;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	0/1:291,169:0.37:460
chr1	207653395	rs17617	C	A	6822.77	.	AC=1;AF=0.500;AN=2;DB;DP=491;set=Intersection	GT:AD:AF:DP	0/1:189,300:0.61:489
chr1	207679229	rs4844599	T	G	16877.77	.	AC=2;AF=1.00;AN=2;DB;DP=620;set=Intersection	GT:AD:AF:DP	1/1:2,616:1.00:618
chr1	207679307	rs4844600	A	G	15901.77	.	AC=2;AF=1.00;AN=2;DB;DP=588;set=Intersection	GT:AD:AF:DP	1/1:2,584:1.00:586
chr1	207753621	rs2274567	A	G	9371.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:1,350:1.00:351
chr1	207757936	rs646817	A	G	3380.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr1	207758232	rs1752688	A	G	11493.77	.	AC=2;AF=1.00;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	1/1:0,404:1.00:404
chr1	207782916	rs4844609	A	T	6920.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr1	207782931	rs6691117	A	G	5886.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:2,219:0.99:221
chr1	207784968	rs3818361	A	G	19676.77	.	AC=2;AF=1.00;AN=2;DB;DP=725;set=Intersection	GT:AD:AF:DP	1/1:0,719:1.00:719
chr1	207790088	rs3811381	C	G	13522.77	.	AC=2;AF=1.00;AN=2;DB;DP=519;set=Intersection	GT:AD:AF:DP	1/1:0,510:1.00:510
chr1	207795320	rs2296160	A	G	3567.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr1	207812791	rs41274776	A	G	597.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:5,24:0.83:29
chr1	207818719	rs11118237	G	A	1420.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:123,75:0.38:198
chr1	207850560	rs67422482	A	G	45.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:12,3:0.20:15
chr1	207850589	rs34451130	A	C	45.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:12,2:0.14:14
chr1	207850717	rs74231794	G	A	3872.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:79,172:0.69:251
chr1	207851487	rs3215758	T	TA	1625.73	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:61,85:0.58:146
chr1	207851611	rs2296158	A	G	10430.77	.	AC=2;AF=1.00;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	1/1:3,397:0.99:400
chr1	207857158	rs12411037	T	C	2445.77	.	AC=1;AF=0.500;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	0/1:278,121:0.30:399
chr1	207857254	rs3085	A	G	12402.77	.	AC=1;AF=0.500;AN=2;DB;DP=913;set=Intersection	GT:AD:AF:DP	0/1:326,582:0.64:908
chr1	207872507	rs41313728	G	A	2256.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:62,92:0.60:154
chr1	207875116	rs150293968	GAGA	G	3445.73	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:39,86:0.69:125
chr1	207888640	.	C	CT	47.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.059;ClippingRankSum=0.000;DP=283;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.84;MQRankSum=-5.714;QD=0.18;ReadPosRankSum=1.000;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:233,39:0.14:272
chr1	207888739	rs7553211	G	T	3375.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:74,154:0.68:228
chr1	207888760	rs2796261	C	T	1063.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:125,61:0.33:186
chr1	207890866	rs2796257	T	C	4770.77	.	AC=1;AF=0.500;AN=2;DB;DP=784;set=Intersection	GT:AD:AF:DP	0/1:512,267:0.34:779
chr1	207941191	rs2724374	G	T	3365.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr1	207956559	rs1962149	G	A	49.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:13,4:0.24:17
chr1	207959122	.	CTTT	C	135.75	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.795;ClippingRankSum=-0.000;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.79;ReadPosRankSum=0.592;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:9,11:0.55:20
chr1	207959136	rs373519619	T	TAA	812.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=35.34;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	207992546	rs12123251	G	A	614.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:70,35:0.33:105
chr1	208062260	rs2745952	T	C	1740.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:63,79:0.56:142
chr1	208063100	rs5780411	G	GA,GAA	3384.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.340;ClippingRankSum=0.000;DB;DP=217;ExcessHet=3.0103;FS=3.227;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.20;MQRankSum=0.718;QD=17.91;ReadPosRankSum=2.066;SOR=0.416;set=HC	GT:AD:AF:DP	1/2:19,105,65:0.56,0.34:189
chr1	208071105	rs3738460	A	G	172.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:16,10:0.38:26
chr1	208072626	rs12029239	A	C	409.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:13,16:0.55:29
chr1	208207839	rs3736963	G	A	3924.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr1	208208034	rs12128144	G	C	288.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.123;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=6.625;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.70;ReadPosRankSum=-0.121;SOR=1.509;set=HC	GT:AD:AF:DP	0/1:84,23:0.21:107
chr1	208208124	rs6540448	C	A	523.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	208211887	rs905100	T	C	2360.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr1	208213125	rs1751580	A	G	9110.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:0,335:1.00:335
chr1	208219164	rs1536471	A	C	1904.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr1	208252489	rs2274445	T	C	167.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:13,8:0.38:21
chr1	208252504	rs2274444	C	A	456.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:11,20:0.65:31
chr1	208255877	rs6540453	T	C	740.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.218;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.45;ReadPosRankSum=1.586;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:91,45:0.33:136
chr1	208270244	rs3818517	A	C	1790.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:46,83:0.64:129
chr1	208276399	rs10654695	C	CCTCT	10999.73	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr1	208390086	rs1664227	G	C	5047.77	.	AC=1;AF=0.500;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	0/1:150,226:0.60:376
chr1	208390155	rs4844657	C	T	6497.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.187;ClippingRankSum=0.000;DB;DP=471;ExcessHet=3.0103;FS=0.533;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.00;ReadPosRankSum=1.824;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:285,179:0.39:464
chr1	208390162	rs4844658	T	C	6442.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.979;ClippingRankSum=0.000;DB;DP=456;ExcessHet=3.0103;FS=1.131;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.32;ReadPosRankSum=0.668;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:273,177:0.39:450
chr1	208391254	rs2782948	C	T	4928.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:65,204:0.76:269
chr1	209779805	rs880783	G	A	2838.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:1,96:0.99:97
chr1	209781417	rs112536633	T	TAC	887.87	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:13,32:0.71:45
chr1	209784663	rs10746421	A	C	471.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:62,23:0.27:85
chr1	209785957	rs2272879	T	G	56.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.329;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=2.361;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.03;ReadPosRankSum=0.457;SOR=0.176;set=HC	GT:AD:AF:DP	0/1:22,6:0.21:28
chr1	209786078	rs2272880	G	A	511.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.517;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=1.446;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.16;ReadPosRankSum=1.564;SOR=0.864;set=HC	GT:AD:AF:DP	0/1:122,40:0.25:162
chr1	209788514	rs2566	G	A	709.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:100,41:0.29:141
chr1	209792015	rs5780528	A	AC	7127.73	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr1	209799253	rs2179402	A	G	3167.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:51,134:0.72:185
chr1	209804095	rs4844863	G	A	1444.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:28,62:0.69:90
chr1	209811829	rs2076355	A	T	714.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:75,39:0.34:114
chr1	209811886	rs2076356	T	G	2046.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:56,94:0.63:150
chr1	209812054	rs35382043	G	A	208.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:24,12:0.33:36
chr1	209812063	rs2076357	T	C	535.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:10,21:0.68:31
chr1	209823354	rs2228339	G	A	1634.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:170,91:0.35:261
chr1	209849002	rs3817870	T	C	5104.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr1	209849399	rs3830766	AG	A	4898.73	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr1	209849406	rs1473683	T	G	4721.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr1	209880216	rs72215241	C	CA	2126.73	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:215,98:0.31:313
chr1	209880259	rs12086634	T	G	2277.77	.	AC=1;AF=0.500;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	0/1:295,129:0.30:424
chr1	209880508	rs58182526	GA	G	87.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.391;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=1.833;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=1.618;QD=1.95;ReadPosRankSum=-0.363;SOR=1.078;set=HC	GT:AD:AF:DP	0/1:32,13:0.29:45
chr1	209905734	rs932335	G	C	687.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:84,35:0.29:119
chr1	209933331	rs6685077	A	G	263.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:44,18:0.29:62
chr1	209933540	rs2076150	A	G	1500.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:204,90:0.31:294
chr1	209933757	rs6696463	G	C	820.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.426;ClippingRankSum=0.000;DB;DP=248;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.35;ReadPosRankSum=-0.281;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:187,58:0.24:245
chr1	209935778	rs10489342	A	G	857.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:89,44:0.33:133
chr1	209936466	rs7548219	A	G	1264.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.120;ClippingRankSum=0.000;DB;DP=315;ExcessHet=3.0103;FS=2.178;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.04;ReadPosRankSum=-1.290;SOR=0.550;set=HC	GT:AD:AF:DP	0/1:231,82:0.26:313
chr1	209936571	rs6540555	A	G	729.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:93,41:0.31:134
chr1	209936631	rs6540556	G	A	431.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:41,20:0.33:61
chr1	209936914	rs17015169	C	T	1405.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:208,87:0.29:295
chr1	209936964	rs34406510	T	TCA	1104.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.405;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.903;QD=6.54;ReadPosRankSum=1.078;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:132,37:0.22:169
chr1	209950681	rs649275	T	C	2406.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.74;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr1	209950760	rs669694	C	G	2305.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr1	209952865	rs623360	C	G	2310.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr1	210001586	rs616227	A	G	2791.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr1	210003388	rs599663	A	C	1114.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	210003402	rs599649	T	C	1373.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	210004199	rs585627	C	G	3882.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:1,139:0.99:140
chr1	210006437	rs655712	GC	AT	2065.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr1	210006603	rs656566	C	T	10224.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:0,380:1.00:380
chr1	210008367	rs685248	C	G	3897.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr1	210008673	rs686582	T	G	3658.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr1	210012102	rs1962735	A	G	1877.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	210015568	rs10570454	GCT	G	6298.73	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr1	210111733	rs12025114	G	A	660.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:67,32:0.32:99
chr1	210407339	rs34824193	T	A	242.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.574;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=3.732;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=1.127;QD=5.52;ReadPosRankSum=-0.076;SOR=0.214;set=HC	GT:AD:AF:DP	0/1:29,15:0.34:44
chr1	210411266	rs11347154	GT	G	1127.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.499;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=3.683;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=0.741;QD=11.39;ReadPosRankSum=-0.782;SOR=0.883;set=HC	GT:AD:AF:DP	0/1:18,81:0.82:99
chr1	210536078	rs2294848	C	G	6923.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr1	210577873	rs2066721	G	C	2412.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr1	210578141	rs2294850	A	G	383.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:8,16:0.67:24
chr1	210591742	rs3215542	TG	T	694.73	.	AC=1;AF=0.500;AN=2;DB;DP=148;MQ=60.15;set=Intersection	GT:AD:AF:DP	0/1:86,35:0.29:121
chr1	210686570	rs4545340	A	G	945.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:17,42:0.71:59
chr1	210686614	rs12142231	A	G	496.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:11,23:0.68:34
chr1	210761462	rs4297293	G	C	3188.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr1	210804319	rs74158952	T	C	880.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:22,38:0.63:60
chr1	210804430	rs4951682	G	A	1646.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:183,90:0.33:273
chr1	210847514	rs1934615	A	T	275.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:23,13:0.36:36
chr1	210856585	rs3135473	G	T	2500.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:2,88:0.98:90
chr1	210857457	rs1135317	A	G	666.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:90,40:0.31:130
chr1	210857483	rs144706702	GGA	G	160.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.447;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=4.710;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.26;ReadPosRankSum=0.429;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:60,11:0.15:71
chr1	211276828	rs3762452	C	T	1760.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:45,79:0.64:124
chr1	211280724	rs199641326	TAA	T	4919.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.528;ClippingRankSum=0.000;DB;DP=413;ExcessHet=3.0103;FS=1.794;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=0.626;QD=14.82;ReadPosRankSum=1.899;SOR=0.563;set=HC	GT:AD:AF:DP	0/1:121,211:0.64:332
chr1	211447435	rs5780634	CT	C	200.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	211447625	rs11580084	G	A	4002.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr1	211452529	rs10708960	TA	T	280.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.750;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.36;ReadPosRankSum=1.635;SOR=1.038;set=HC	GT:AD:AF:DP	0/1:7,23:0.77:30
chr1	211452678	rs3767377	G	A	3207.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr1	211452728	rs3767378	G	A	2022.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr1	211527609	rs7530570	C	A	938.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:1,31:0.97:32
chr1	211545442	rs10717294	CT	C	295.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.886;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=16.178;MLEAC=1;MLEAF=0.500;MQ=60.44;MQRankSum=1.158;QD=6.29;ReadPosRankSum=-0.230;SOR=2.910;set=HC	GT:AD:AF:DP	0/1:18,29:0.62:47
chr1	211751479	.	AGGCCGT	A	3340.73	.	AC=1;AF=0.500;AN=2;DP=156;set=Intersection	GT:AD:AF:DP	0/1:47,85:0.64:132
chr1	211840278	rs1542140	T	C	161.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:12,8:0.40:20
chr1	211846876	rs701929	A	G	4770.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;MQ=59.98;set=Intersection	GT:AD:AF:DP	0/1:81,220:0.73:301
chr1	212142054	rs11322485	GA	G	180.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.597;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.20;ReadPosRankSum=-1.011;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:22,21:0.49:43
chr1	212209034	rs17018373	G	A	1065.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:28,43:0.61:71
chr1	212217944	.	G	GA	150.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.050;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=-0.800;QD=3.51;ReadPosRankSum=-0.601;SOR=0.815;set=HC	GT:AD:AF:DP	0/1:27,16:0.37:43
chr1	212217971	rs35704923	C	CTT	3436.73	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr1	212220847	rs2970592	G	A	406.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:45,23:0.34:68
chr1	212236157	rs4951436	G	T	2901.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr1	212241714	rs35528691	T	TAA	568.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.616;ClippingRankSum=0.000;DB;DP=231;ExcessHet=3.0103;FS=4.463;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.699;QD=3.39;ReadPosRankSum=-1.161;SOR=0.352;set=HC	GT:AD:AF:DP	0/1:114,54:0.32:168
chr1	212245344	rs12145020	A	G	527.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:36,22:0.38:58
chr1	212251103	rs6658972	A	G	854.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.14;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	212251367	rs5780675	GT	G	1835.73	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:10,99:0.91:109
chr1	212253917	rs3839029	AT	A	1080.73	.	AC=1;AF=0.500;AN=2;DB;DP=50;MQ=60.22;set=Intersection	GT:AD:AF:DP	0/1:16,34:0.68:50
chr1	212273606	rs35137676	G	A	1345.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:219,82:0.27:301
chr1	212273639	rs3135474	C	T	8415.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr1	212274413	rs6540718	A	C	2925.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr1	212475634	rs12743785	C	T	303.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:13,14:0.52:27
chr1	212521639	rs701908	T	G	5402.77	.	AC=1;AF=0.500;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	0/1:109,234:0.68:343
chr1	212526288	rs792442	C	T	4804.77	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:121,210:0.63:331
chr1	212530192	rs792439	T	C	2946.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr1	212530659	rs71743881	C	CT	109.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.392;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=1.616;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.33;ReadPosRankSum=1.463;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:33,14:0.30:47
chr1	212551139	rs71573837	G	GCA	1623.73	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:30,43:0.59:73
chr1	212560327	rs792449	A	G	11068.77	.	AC=2;AF=1.00;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	1/1:0,406:1.00:406
chr1	212617860	rs3222182	CGTGTGTGTGT	C,CGTGTGT	883.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=40.17;SOR=3.912;set=HC	GT:AD:AF:DP	1/2:0,15,7:0.68,0.32:22
chr1	212791288	rs3839030	CGT	C	171.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.837;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=1.983;MLEAC=1;MLEAF=0.500;MQ=60.62;MQRankSum=2.281;QD=5.72;ReadPosRankSum=-0.271;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:19,11:0.37:30
chr1	212799870	rs3122713	A	G	9546.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	1/1:2,344:0.99:346
chr1	212799949	rs3795842	C	T	10849.77	.	AC=2;AF=1.00;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	1/1:1,405:1.00:406
chr1	212870292	rs2233925	C	T	2003.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:40,83:0.67:123
chr1	212870410	rs2233924	G	A	1717.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.299;ClippingRankSum=0.000;DB;DP=385;ExcessHet=3.0103;FS=7.593;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.46;ReadPosRankSum=-0.751;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:277,108:0.28:385
chr1	212872852	rs73079851	T	C	2542.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:52,111:0.68:163
chr1	212873181	rs113665144	C	A	157.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:19,9:0.32:28
chr1	212900434	rs3835160	C	CG	293.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.685;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=3.795;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.76;ReadPosRankSum=-0.889;SOR=1.557;set=HC	GT:AD:AF:DP	0/1:39,12:0.24:51
chr1	212900487	rs2244935	A	G	736.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:70,40:0.36:110
chr1	212911836	rs15702	T	C	2003.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:194,109:0.36:303
chr1	212912108	rs67229635	ATT	A	376.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.073;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=10.268;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.73;ReadPosRankSum=-0.298;SOR=0.058;set=HC	GT:AD:AF:DP	0/1:35,21:0.38:56
chr1	212955454	rs11120026	G	A	1238.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.349;ClippingRankSum=0.000;DB;DP=221;ExcessHet=3.0103;FS=1.119;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.63;ReadPosRankSum=1.052;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:148,72:0.33:220
chr1	212969842	rs11421046	C	CT	52.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.230;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.78;ReadPosRankSum=1.148;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:12,7:0.37:19
chr1	212970375	rs1284800	A	G	2855.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr1	212985466	rs12130945	C	T	168.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:17,11:0.39:28
chr1	213009469	rs10864004	A	G	1099.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:94,60:0.39:154
chr1	213031709	rs2201603	C	T	307.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:12,13:0.52:25
chr1	213031948	rs11120047	G	C	1059.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:100,52:0.34:152
chr1	213032568	rs12023052	T	A	722.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.709;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=1.448;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.95;ReadPosRankSum=-1.151;SOR=0.561;set=HC	GT:AD:AF:DP	0/1:103,43:0.29:146
chr1	213056819	rs2644547	A	G	3956.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.56;SOR=0.706;set=HC	GT:AD:AF:DP	1/1:0,149:1.00:149
chr1	213056892	rs12125982	A	G	518.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:72,32:0.31:104
chr1	213058852	rs7536716	T	A	415.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.701;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=12.322;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.23;ReadPosRankSum=1.166;SOR=0.036;set=HC	GT:AD:AF:DP	0/1:21,13:0.38:34
chr1	213062017	rs112024320	T	TTTG	846.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.316;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=7.077;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.76;ReadPosRankSum=2.242;SOR=1.926;set=HC	GT:AD:AF:DP	0/1:48,24:0.33:72
chr1	213068192	rs2792558	T	C	265.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:23,13:0.36:36
chr1	213068233	rs12408694	C	T	554.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:59,31:0.34:90
chr1	213068595	rs3207090	C	T	1305.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.384;ClippingRankSum=0.000;DB;DP=378;ExcessHet=3.0103;FS=0.440;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.51;ReadPosRankSum=-0.132;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:280,92:0.25:372
chr1	213124871	rs3123305	G	A	239.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:29,13:0.31:42
chr1	213139748	rs3738805	T	G	865.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:83,46:0.36:129
chr1	213140362	rs10779597	G	A	295.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:47,19:0.29:66
chr1	213140398	rs10779598	A	C	412.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.784;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.835;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.86;ReadPosRankSum=1.354;SOR=0.834;set=HC	GT:AD:AF:DP	0/1:79,28:0.26:107
chr1	213140424	rs41275392	C	T	2022.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:36,88:0.71:124
chr1	213146944	rs7511930	A	G	137.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.412;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=4.918;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.13;ReadPosRankSum=-1.725;SOR=0.099;set=HC	GT:AD:AF:DP	0/1:34,10:0.23:44
chr1	213173457	rs3738806	C	T	669.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:12,25:0.68:37
chr1	213178340	rs11120076	G	A	1045.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:21,44:0.68:65
chr1	213224719	rs4951476	T	C	1880.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.219;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.67;ReadPosRankSum=-3.212;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:35,85:0.71:120
chr1	213341122	rs78772049	G	A	751.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.687;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.871;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.54;ReadPosRankSum=-0.047;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:51,37:0.42:88
chr1	213405414	rs11271079	GGCAACTGAGGAT	G	2397.73	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:33,61:0.65:94
chr1	214478459	rs6540819	G	A	3800.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.618;ClippingRankSum=0.000;DB;DP=272;ExcessHet=3.0103;FS=1.540;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.18;ReadPosRankSum=-0.001;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:94,174:0.65:268
chr1	214492106	rs34932055	C	A	1017.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.413;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.25;ReadPosRankSum=-0.667;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:22,37:0.63:59
chr1	214492286	rs1134647	G	A	6643.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr1	214503489	rs2291830	T	G	11089.77	.	AC=2;AF=1.00;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	1/1:0,428:1.00:428
chr1	214504604	rs2270704	T	C	2641.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr1	214505596	rs1874804	C	T	1025.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:32,49:0.60:81
chr1	214505689	rs870118	G	C	45.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.385;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.58;ReadPosRankSum=1.054;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:7,3:0.30:10
chr1	214509970	rs12406647	C	T	2314.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:63,97:0.61:160
chr1	214542668	rs3002311	T	C	1227.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr1	214542819	rs1135352	T	C	9266.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:0,346:1.00:346
chr1	214543098	rs3738425	A	G	243.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.158;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.13;ReadPosRankSum=-1.687;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:45,14:0.24:59
chr1	214549501	rs1125452	C	T	804.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:17,31:0.65:48
chr1	214551276	rs3013451	G	A	3445.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr1	214556810	rs114986084	C	T	2107.77	.	AC=1;AF=0.500;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	0/1:244,119:0.33:363
chr1	214558228	rs3013446	A	G	498.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	214564340	rs7550799	T	C	10376.77	.	AC=2;AF=1.00;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	1/1:0,376:1.00:376
chr1	214564442	rs11120307	C	G	2401.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr1	214566845	rs7355212	A	G	660.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	214566952	rs4655342	A	G	2798.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.91;SOR=1.043;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr1	214567013	rs11322819	CG	C	4314.73	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr1	214571251	rs11580603	A	C	2659.77	.	AC=1;AF=0.500;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	0/1:310,152:0.33:462
chr1	214575122	rs17022807	T	C	3075.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:95,146:0.61:241
chr1	214638172	rs10864100	C	T	12314.77	.	AC=2;AF=1.00;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	1/1:2,450:1.00:452
chr1	214787130	rs2070064	G	A	2155.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:38,90:0.70:128
chr1	214814571	rs3795521	C	T	1179.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:30,50:0.62:80
chr1	214820099	rs3748697	A	G	2226.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:60,96:0.62:156
chr1	214825289	rs71679696	CT	C	76.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.473;ClippingRankSum=0.000;DB;DP=234;ExcessHet=3.0103;FS=2.755;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=0.000;QD=0.42;ReadPosRankSum=0.869;SOR=0.444;set=HC	GT:AD:AF:DP	0/1:145,36:0.20:181
chr1	214826196	rs335524	G	A	398.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:83,27:0.25:110
chr1	214826810	.	CTT	C,CT	4010.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.196;ClippingRankSum=0.000;DP=377;ExcessHet=3.0103;FS=3.214;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.20;MQRankSum=0.985;QD=12.38;ReadPosRankSum=1.120;SOR=0.816;set=HC	GT:AD:AF:DP	1/2:43,67,214:0.21,0.66:324
chr1	214828812	rs435043	A	G	1246.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:135,67:0.33:202
chr1	214830617	rs438034	A	G	2413.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.035;ClippingRankSum=0.000;DB;DP=497;ExcessHet=3.0103;FS=0.577;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.94;ReadPosRankSum=-0.403;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:347,142:0.29:489
chr1	214837110	rs7289	C	G	1181.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:146,61:0.29:207
chr1	215345263	.	GTC	G	91.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.559;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=4.570;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=2.209;QD=2.04;ReadPosRankSum=0.466;SOR=0.140;set=HC	GT:AD:AF:DP	0/1:37,8:0.18:45
chr1	215368514	rs1556907	A	G	679.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:23,30:0.57:53
chr1	215408057	rs11120527	G	T	988.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	215741053	rs2275768	T	G	1986.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr1	215753355	rs11803705	T	G	6023.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr1	215781574	rs3767255	A	G	1513.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr1	215808007	rs56038610	G	A	6992.77	.	AC=1;AF=0.500;AN=2;DB;DP=498;set=Intersection	GT:AD:AF:DP	0/1:168,315:0.65:483
chr1	215814186	rs66968954	CA	C	124.82	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.993;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=9.60;ReadPosRankSum=-0.134;SOR=0.593;set=HC	GT:AD:AF:DP	1/1:1,12:0.92:13
chr1	215848062	rs2009923	C	T	2357.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:53,105:0.66:158
chr1	215848641	rs2797235	T	C	3856.77	.	AC=1;AF=0.500;AN=2;DB;DP=646;MQ=59.99;set=Intersection	GT:AD:AF:DP	0/1:422,216:0.34:638
chr1	215849044	rs4443864	C	G	530.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:7,23:0.77:30
chr1	215853748	rs5780842	GT	G	305.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.330;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=5.229;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.395;QD=2.26;ReadPosRankSum=0.210;SOR=0.350;set=HC	GT:AD:AF:DP	0/1:98,37:0.27:135
chr1	215914646	rs6694510	T	A	106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.946;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=5.386;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.91;ReadPosRankSum=-0.765;SOR=0.115;set=HC	GT:AD:AF:DP	0/1:46,10:0.18:56
chr1	215914826	rs35309576	T	C	416.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.134;ClippingRankSum=0.000;DB;DP=249;ExcessHet=3.0103;FS=0.609;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=-0.461;QD=1.69;ReadPosRankSum=1.159;SOR=0.603;set=HC	GT:AD:AF:DP	0/1:202,45:0.18:247
chr1	215914883	rs34565443	GA	G	201.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.577;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=2.349;QD=1.70;ReadPosRankSum=-1.572;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:89,30:0.25:119
chr1	215916563	rs11120616	G	A	2295.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.207;ClippingRankSum=0.000;DB;DP=487;ExcessHet=3.0103;FS=1.940;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.83;ReadPosRankSum=-0.206;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:335,140:0.29:475
chr1	215916728	.	ATGTG	A,ATG	721.73	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=10.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=34.37;SOR=4.505;set=HC	GT:AD:AF:DP	1/2:1,7,13:0.33,0.62:21
chr1	215916732	rs4053764	G	A	323.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:11,13:0.54:24
chr1	215916734	rs372668836	G	A	44.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.655;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.60;ReadPosRankSum=1.322;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:23,5:0.18:28
chr1	215931922	.	CT	C	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.055;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=2.028;QD=0.84;ReadPosRankSum=-1.121;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:35,11:0.24:46
chr1	216172128	.	C	CA	812.73	.	AC=1;AF=0.500;AN=2;DP=85;set=Intersection	GT:AD:AF:DP	0/1:32,51:0.61:83
chr1	216219781	rs6657250	A	G	6061.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr1	216246675	rs35944387	AG	A	2220.73	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr1	216258213	rs56222536	A	G	1953.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:33,80:0.71:113
chr1	216270618	rs7540411	G	A	1788.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:61,78:0.56:139
chr1	216348764	rs1805049	C	T	945.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:90,50:0.36:140
chr1	216370130	rs386851	T	G	406.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:32,18:0.36:50
chr1	216390694	rs1324330	C	T	1087.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:115,60:0.34:175
chr1	216462662	rs1805048	T	A	6117.77	.	AC=1;AF=0.500;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	0/1:150,277:0.65:427
chr1	216497469	rs145313346	CCAAT	C	2149.73	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:19,55:0.74:74
chr1	216500830	rs1339963	G	C	1871.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:34,71:0.68:105
chr1	216538507	rs45594833	A	G	1073.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:11,41:0.79:52
chr1	216592003	rs4253963	T	C	2816.77	.	AC=1;AF=0.500;AN=2;DB;DP=453;set=Intersection	GT:AD:AF:DP	0/1:287,159:0.36:446
chr1	216595306	rs10779261	C	T	1744.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.643;ClippingRankSum=0.000;DB;DP=397;ExcessHet=3.0103;FS=3.017;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.50;ReadPosRankSum=-1.270;SOR=0.822;set=HC	GT:AD:AF:DP	0/1:278,110:0.28:388
chr1	216737861	rs11117622	G	T	138.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:15,7:0.32:22
chr1	216880662	rs11572672	G	A	6948.77	.	AC=1;AF=0.500;AN=2;DB;DP=476;set=Intersection	GT:AD:AF:DP	0/1:161,305:0.65:466
chr1	217793938	rs111668135	T	TTAA	188.73	.	AC=1;AF=0.500;AN=2;DB;DP=11;MQ=60.98;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr1	217804325	rs944730	G	A	4936.77	.	AC=1;AF=0.500;AN=2;DB;DP=880;set=Intersection	GT:AD:AF:DP	0/1:590,282:0.32:872
chr1	217856803	rs12073566	T	C	207.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.444;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.72;ReadPosRankSum=-0.503;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:30,14:0.32:44
chr1	217947738	rs6604561	G	A	5364.77	.	AC=1;AF=0.500;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	0/1:126,239:0.65:365
chr1	218036237	rs6658846	T	G	705.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:8,32:0.80:40
chr1	218475533	rs2251169	C	T	259.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.765;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=3.743;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.72;ReadPosRankSum=-2.079;SOR=0.181;set=HC	GT:AD:AF:DP	0/1:39,16:0.29:55
chr1	218578685	.	TTTG	T	126.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.049;ClippingRankSum=0.000;DP=275;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.82;ReadPosRankSum=1.344;SOR=0.607;set=HC	GT:AD:AF:DP	0/1:139,15:0.10:154
chr1	218578726	rs142802402	ACT	A	136.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.201;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=1.236;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.40;ReadPosRankSum=0.381;SOR=0.410;set=HC	GT:AD:AF:DP	0/1:85,13:0.13:98
chr1	219366400	rs35359058	T	TG	752.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.433;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.16;MQRankSum=0.600;QD=22.81;ReadPosRankSum=0.528;SOR=3.321;set=HC	GT:AD:AF:DP	1/1:2,31:0.94:33
chr1	219383848	rs5781096	A	ACTTTTT	1704.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	219383867	rs940571	T	C	1656.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	219383905	rs940570	A	G	2232.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr1	219706428	rs10746385	T	C	9464.77	.	AC=1;AF=0.500;AN=2;DB;DP=664;set=Intersection	GT:AD:AF:DP	0/1:211,444:0.68:655
chr1	219783257	rs183522757	A	C	2345.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.080;ClippingRankSum=0.000;DB;DP=407;ExcessHet=3.0103;FS=8.901;MLEAC=1;MLEAF=0.500;MQ=54.16;MQRankSum=12.362;QD=5.76;ReadPosRankSum=-0.019;SOR=0.391;set=HC	GT:AD:AF:DP	0/1:273,134:0.33:407
chr1	219783279	rs79789352	T	A	3949.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:113,182:0.62:295
chr1	220089352	rs2231734	A	C	1542.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	220142023	rs1061248	C	T	424.84	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:3,16:0.84:19
chr1	220142070	rs1061242	C	T	1205.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:18,53:0.75:71
chr1	220145371	rs2795315	T	G	1166.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	220145584	rs1982986	C	T	694.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:17,28:0.62:45
chr1	220145655	rs1982984	C	T	209.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:7,9:0.56:16
chr1	220151808	rs3215088	C	CAA	2002.73	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:25,50:0.67:75
chr1	220153332	rs34917248	T	TAA	6007.73	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr1	220154246	rs35193743	AT	A	1058.73	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:14,67:0.83:81
chr1	220154659	rs10595099	TAAA	T,TA	4355.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.070;ClippingRankSum=0.000;DB;DP=200;ExcessHet=3.0103;FS=2.508;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.05;MQRankSum=0.185;QD=23.54;ReadPosRankSum=0.665;SOR=0.332;set=HC	GT:AD:AF:DP	1/2:5,152,28:0.82,0.15:185
chr1	220154768	rs1061160	C	T	3562.77	.	AC=1;AF=0.500;AN=2;DB;DP=615;set=Intersection	GT:AD:AF:DP	0/1:403,203:0.33:606
chr1	220156090	rs2647462	T	C	9433.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:0,354:1.00:354
chr1	220156427	rs1391566	T	C	864.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:13,32:0.71:45
chr1	220156704	rs5030752	T	C	1612.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:128,56:0.30:184
chr1	220156729	rs5030754	C	T	1282.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:91,39:0.30:130
chr1	220160360	rs2647435	A	G	990.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:35,46:0.57:81
chr1	220160433	rs2647434	A	G	3688.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:83,156:0.65:239
chr1	220162195	rs2254494	T	C	1602.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:26,60:0.70:86
chr1	220178717	rs5781162	T	TA	1467.73	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:38,60:0.61:98
chr1	220184150	rs34170326	CAA	CA,C	267.73	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=50;set=Intersection	GT:AF:DP	0/1:0.61:41
chr1	220184164	rs28570471	A	G	1469.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.688;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=3.796;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.71;ReadPosRankSum=2.808;SOR=1.739;set=HC	GT:AD:AF:DP	0/1:15,47:0.76:62
chr1	220192192	.	TAA	T	80.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.667;ClippingRankSum=0.000;DP=48;ExcessHet=3.0103;FS=2.685;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.72;ReadPosRankSum=0.141;SOR=0.171;set=HC	GT:AD:AF:DP	0/1:39,8:0.17:47
chr1	220192495	rs2245457	C	G	2297.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:57,94:0.62:151
chr1	220197545	rs2577159	C	T	2017.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:27,85:0.76:112
chr1	220197625	rs2230301	G	T	5022.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:97,222:0.70:319
chr1	220205943	rs2789816	G	A	955.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:27,39:0.59:66
chr1	220205980	rs2577138	A	C	549.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:21,22:0.51:43
chr1	220207017	rs2647456	C	T	1473.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:28,66:0.70:94
chr1	220208154	rs2789817	C	A	1197.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:20,47:0.70:67
chr1	220239448	rs1146773	T	C	5477.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr1	220362857	rs35162828	AT	A	134.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.108;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.62;ReadPosRankSum=0.573;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:2,12:0.86:14
chr1	220374047	rs12129903	A	C	216.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:8,12:0.60:20
chr1	220603310	rs10553491	TGTGA	T	1186.73	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:36,64:0.64:100
chr1	220607685	rs1361256	G	A	6319.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.22;SOR=0.881;set=HC	GT:AD:AF:DP	1/1:0,241:1.00:241
chr1	220607891	rs1338767	A	G	3480.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr1	220789236	rs2786599	C	T	1727.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr1	220789362	rs12137627	T	A	666.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.431;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=1.972;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=18.52;ReadPosRankSum=-0.182;SOR=0.379;set=HC	GT:AD:AF:DP	1/1:4,32:0.89:36
chr1	220808921	rs10746403	T	C	3377.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr1	220824115	rs12123306	G	C	948.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.433;ClippingRankSum=0.000;DB;DP=264;ExcessHet=3.0103;FS=1.127;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.61;ReadPosRankSum=0.990;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:201,62:0.24:263
chr1	220825523	rs3737296	A	G	3199.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr1	220970028	rs2642438	A	G	7664.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr1	221053574	rs62621984	A	C	3447.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.300;ClippingRankSum=0.000;DB;DP=783;ExcessHet=3.0103;FS=0.588;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.43;ReadPosRankSum=-0.853;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:563,215:0.28:778
chr1	221055463	rs2247213	G	A	1468.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.517;ClippingRankSum=0.000;DB;DP=363;ExcessHet=3.0103;FS=1.970;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.09;ReadPosRankSum=-2.047;SOR=0.815;set=HC	GT:AD:AF:DP	0/1:263,96:0.27:359
chr1	221057646	rs2738755	C	T	1577.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.138;ClippingRankSum=0.000;DB;DP=230;ExcessHet=3.0103;FS=3.891;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.01;ReadPosRankSum=1.893;SOR=0.471;set=HC	GT:AD:AF:DP	0/1:139,86:0.38:225
chr1	221057739	rs11578466	C	G	1761.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:196,92:0.32:288
chr1	221058059	rs2738756	C	T	1370.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:168,78:0.32:246
chr1	221507141	rs7555947	C	T	3265.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr1	221876029	rs11118830	G	A	1730.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:43,68:0.61:111
chr1	221876126	rs2280340	A	G	242.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:11,12:0.52:23
chr1	221912361	rs1141714	T	C	2799.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:65,118:0.64:183
chr1	222721288	rs4846382	C	T	4812.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr1	222734803	rs1134898	G	C	10921.77	.	AC=2;AF=1.00;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	1/1:0,403:1.00:403
chr1	222737265	rs35877231	G	T	458.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	222737568	rs3008640	C	T	649.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	222742676	rs4846766	T	C	635.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	222751034	rs2936033	T	C	5547.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr1	222798106	rs3008617	G	A	3629.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr1	222802006	rs2936053	A	G	7665.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr1	222802803	rs3748626	T	G	10577.77	.	AC=2;AF=1.00;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	1/1:3,394:0.99:397
chr1	222802926	rs3008620	C	T	14377.77	.	AC=2;AF=1.00;AN=2;DB;DP=540;set=Intersection	GT:AD:AF:DP	1/1:0,533:1.00:533
chr1	222821211	rs61824282	C	T	1417.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr1	222823529	rs17465637	A	C	1130.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	222823743	rs67180937	T	G	1087.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.19;SOR=1.788;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	222825403	rs3002150	G	A	888.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	222825717	rs10495198	T	C	6936.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:1,262:1.00:263
chr1	222825761	rs2936019	G	A	3855.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr1	222826481	rs2291832	G	A	4034.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr1	222832295	rs2291834	T	C	1468.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	222833601	rs3002153	T	C	4256.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr1	222837594	rs2270707	G	A	2657.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr1	222838216	rs2936026	C	T	3019.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:1,111:0.99:112
chr1	222838539	.	CAA	C	123.52	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.010;ClippingRankSum=-0.000;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.57;MQRankSum=0.385;QD=9.50;ReadPosRankSum=1.440;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:6,7:0.54:13
chr1	222846882	rs12138316	G	A	1367.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	222860734	rs3008638	C	T	447.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	222876705	.	C	CAA	82.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.671;ClippingRankSum=-0.000;DP=17;ExcessHet=3.0103;FS=3.424;MLEAC=1;MLEAF=0.500;MQ=60.63;MQRankSum=0.605;QD=7.52;ReadPosRankSum=0.081;SOR=0.074;set=HC	GT:AD:AF:DP	0/1:5,6:0.55:11
chr1	222886119	rs3811465	A	G	12394.77	.	AC=2;AF=1.00;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	1/1:1,452:1.00:453
chr1	222919895	rs2378607	T	G	1912.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr1	222923001	rs2068814	A	G	3089.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr1	222923351	rs6683071	A	G	1974.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr1	223116240	rs61746477	G	A	10147.77	.	AC=1;AF=0.500;AN=2;DB;DP=654;set=Intersection	GT:AD:AF:DP	0/1:206,445:0.68:651
chr1	223152868	rs1815607	G	A	2357.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr1	223156382	rs2926159	C	T	2250.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr1	223178561	rs9441941	A	C	18090.77	.	AC=2;AF=1.00;AN=2;DB;DP=685;set=Intersection	GT:AD:AF:DP	1/1:3,674:1.00:677
chr1	223283910	rs7512943	A	G	12242.77	.	AC=2;AF=1.00;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	1/1:0,435:1.00:435
chr1	223284528	rs5744174	A	G	3636.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:79,155:0.66:234
chr1	223284599	rs2072493	T	C	1366.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:132,69:0.34:201
chr1	223532570	rs1547788	T	C	2487.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:62,112:0.64:174
chr1	223567803	rs10907376	G	A	4241.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:66,185:0.74:251
chr1	223716349	rs4072246	G	A	1948.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:157,100:0.39:257
chr1	223717379	rs61823524	A	C	3580.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr1	223717484	rs34158997	G	A	1321.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:160,76:0.32:236
chr1	223718518	rs61823552	C	A	94.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.467;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=6.039;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.63;ReadPosRankSum=-0.167;SOR=1.949;set=HC	GT:AD:AF:DP	0/1:49,9:0.16:58
chr1	223718764	rs35808016	C	T	1578.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:29,68:0.70:97
chr1	223722646	rs34630115	T	TA	100.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.249;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.68;ReadPosRankSum=-1.131;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:46,14:0.23:60
chr1	223727995	.	T	TA	63.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.005;ClippingRankSum=0.000;DP=73;ExcessHet=3.0103;FS=8.292;MLEAC=1;MLEAF=0.500;MQ=51.89;MQRankSum=-5.163;QD=1.04;ReadPosRankSum=0.695;SOR=2.255;set=HC	GT:AD:AF:DP	0/1:47,14:0.23:61
chr1	223799857	rs34786756	C	T	5868.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:2,221:0.99:223
chr1	223799871	rs35116708	C	T	5747.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:2,217:0.99:219
chr1	223805804	rs34893034	C	T	650.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:13,29:0.69:42
chr1	223807239	rs34693465	C	G	2125.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:33,85:0.72:118
chr1	223807262	rs34900680	G	A	1442.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:25,58:0.70:83
chr1	223810318	rs61825177	G	A	250.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:13,12:0.48:25
chr1	223813586	rs35539373	G	T	996.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:114,58:0.34:172
chr1	223814671	rs61825208	A	T	751.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:63,37:0.37:100
chr1	223814682	rs67990281	A	T	1639.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:45,66:0.59:111
chr1	223815575	rs34187970	G	A	1980.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr1	223816322	rs66602040	A	G	6317.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr1	223816347	rs61825210	A	G	7187.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:2,276:0.99:278
chr1	223830566	rs11584107	G	A	13884.77	.	AC=2;AF=1.00;AN=2;DB;DP=541;set=Intersection	GT:AD:AF:DP	1/1:2,529:1.00:531
chr1	223841913	rs11585533	C	A	4528.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr1	223900408	rs25655	C	G	13868.77	.	AC=2;AF=1.00;AN=2;DB;DP=516;set=Intersection	GT:AD:AF:DP	1/1:0,512:1.00:512
chr1	223900612	rs2275877	G	A	1147.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:104,57:0.35:161
chr1	223905532	rs17596	G	A	6163.77	.	AC=1;AF=0.500;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	0/1:147,283:0.66:430
chr1	223931648	rs1222137	T	C	771.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	223934720	rs17600	G	A	6642.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr1	223938565	rs1153968	A	C	1090.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:180,70:0.28:250
chr1	223954080	rs17599	A	C	3106.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:78,135:0.63:213
chr1	224196676	rs193140056	C	T	1039.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:118,58:0.33:176
chr1	224301749	rs6690695	C	T	290.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:3,11:0.79:14
chr1	224302154	rs3066024	T	TGAG	6851.73	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr1	224318151	rs3065998	T	TTTG	4248.73	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr1	224321984	rs1472167	C	T	1928.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr1	224345012	rs7543762	G	A	1607.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	224380234	rs908804	A	G	389.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:57,22:0.28:79
chr1	224415509	rs3767732	A	G	344.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.057;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.983;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.31;ReadPosRankSum=-1.625;SOR=0.505;set=HC	GT:AD:AF:DP	0/1:58,22:0.28:80
chr1	224444628	rs10799556	C	T	15897.77	.	AC=2;AF=1.00;AN=2;DB;DP=596;set=Intersection	GT:AD:AF:DP	1/1:0,591:1.00:591
chr1	224444901	rs2897055	G	C	1432.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	224468986	rs34156240	C	CGTGT,CGT	1335.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=58;set=Intersection	GT:AF:DP	1/1:1.00:33
chr1	224482216	rs2404783	T	C	689.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	224492381	rs7522125	C	T	1981.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr1	224492746	rs3754090	C	T	16340.77	.	AC=2;AF=1.00;AN=2;DB;DP=615;set=Intersection	GT:AD:AF:DP	1/1:0,614:1.00:614
chr1	224495852	rs7534447	C	T	10171.77	.	AC=2;AF=1.00;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	1/1:0,373:1.00:373
chr1	224505570	rs3066969	T	TAA	3247.73	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr1	224505719	rs4436353	T	G	519.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	224514275	rs4653578	G	A	691.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	224517842	rs2896990	C	T	7209.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:1,271:1.00:272
chr1	224517907	rs4146965	A	T	3323.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr1	224585958	rs7522956	A	C	3952.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr1	224588825	rs7518109	T	A	1699.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.56;SOR=1.503;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr1	224600910	rs10916612	C	A	1602.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.504;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=3.104;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=34.10;ReadPosRankSum=-0.318;SOR=0.359;set=HC	GT:AD:AF:DP	1/1:1,46:0.98:47
chr1	224600920	rs10916613	C	A	1576.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=3.108;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=35.04;ReadPosRankSum=-0.366;SOR=0.365;set=HC	GT:AD:AF:DP	1/1:1,44:0.98:45
chr1	224606249	rs10495219	C	G	278.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	224621368	rs2405033	G	C	2864.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr1	224868596	rs7525096	A	C	4518.77	.	AC=1;AF=0.500;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	0/1:134,209:0.61:343
chr1	224872443	rs3738364	A	G	3387.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:72,150:0.68:222
chr1	224872473	rs3738363	A	G	3703.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.516;ClippingRankSum=0.000;DB;DP=263;ExcessHet=3.0103;FS=1.564;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.14;ReadPosRankSum=2.273;SOR=0.604;set=HC	GT:AD:AF:DP	0/1:91,171:0.65:262
chr1	224926997	rs11342205	CT	C	44.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.174;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.49;ReadPosRankSum=-0.671;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:8,10:0.56:18
chr1	225156457	rs16858926	G	A	1018.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	225230608	rs2501107	C	T	3535.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr1	225237850	rs2501086	A	C	307.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	225266966	rs3105559	C	G	1628.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr1	225268343	rs3128651	A	G	9438.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.90;SOR=0.951;set=HC	GT:AD:AF:DP	1/1:0,215:1.00:215
chr1	225268346	rs3128652	G	A	9349.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.17;SOR=0.962;set=HC	GT:AD:AF:DP	1/1:0,207:1.00:207
chr1	225270409	rs3128655	A	T	2612.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr1	225273248	rs3128658	G	T	1607.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	225273633	rs3105565	T	A	430.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	225311160	rs16844054	G	C	1639.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:1,54:0.98:55
chr1	225346975	rs1480101	C	G	4281.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr1	225355525	rs12754116	G	T	348.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	225373072	rs61851487	C	T	3792.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr1	225393587	rs12097990	C	T	634.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	225394645	rs1466468	A	T	867.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:2,33:0.94:35
chr1	225439988	rs630120	T	C	3627.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:2,135:0.99:137
chr1	225445652	rs670255	G	T	3685.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr1	225460626	rs656649	T	A	2612.73	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr1	225463449	rs686493	A	T	415.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	225463772	rs581675	A	G	1347.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	225477869	rs36116837	A	G	556.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	225506262	rs4653418	G	A	6319.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:2,234:0.99:236
chr1	225512402	rs75859387	GT	G	10505.73	.	AC=2;AF=1.00;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	1/1:0,400:1.00:400
chr1	225528183	rs3856145	C	A	5519.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr1	225533684	rs6667999	A	G	8210.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr1	225534219	rs7527925	T	C	4017.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr1	225534348	rs7535953	G	A	1122.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	225539665	rs3856150	T	A	823.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	225541372	rs6676935	A	G	230.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	225545301	rs142111235	A	AATATGTGATAT	1181.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=56.27;SOR=6.184;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	225545580	rs12745950	A	C	6236.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.157;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=40.76;ReadPosRankSum=-1.020;SOR=1.563;set=HC	GT:AD:AF:DP	1/1:2,151:0.99:153
chr1	225545588	rs34993311	A	G	5783.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.366;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=2.976;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=44.84;ReadPosRankSum=-0.950;SOR=1.907;set=HC	GT:AD:AF:DP	1/1:2,127:0.98:129
chr1	225546172	rs9659299	C	G	426.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	225552624	rs10495239	G	A	1395.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr1	225552650	rs12563830	C	T	981.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	225562385	rs10915816	C	T	5132.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr1	225565015	rs3856154	T	C	2702.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:77,124:0.62:201
chr1	225565073	rs3856155	C	T	2643.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:62,118:0.66:180
chr1	225567813	rs61615439	C	T	594.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.974;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=1.759;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.56;ReadPosRankSum=0.649;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:74,33:0.31:107
chr1	225569241	rs950210	T	G	1818.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:31,84:0.73:115
chr1	225576058	rs6679430	T	C	2269.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:46,100:0.68:146
chr1	225576311	rs10753405	A	G	1589.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:34,72:0.68:106
chr1	225577648	rs12134158	C	T	1627.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:41,64:0.61:105
chr1	225579918	rs41268717	A	T	207.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:23,11:0.32:34
chr1	225586737	.	AT	A	118.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.323;ClippingRankSum=0.000;DP=240;ExcessHet=3.0103;FS=5.748;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=3.974;QD=0.52;ReadPosRankSum=-3.165;SOR=0.360;set=HC	GT:AD:AF:DP	0/1:182,48:0.21:230
chr1	225600351	.	T	TA	202.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.297;ClippingRankSum=0.000;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.42;MQRankSum=0.000;QD=2.53;ReadPosRankSum=-0.245;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:54,26:0.33:80
chr1	225601647	rs3766928	C	T	4462.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:86,199:0.70:285
chr1	225602823	rs6666171	A	T	130.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:24,8:0.25:32
chr1	225603103	rs6702433	C	T	332.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	225607144	rs2230419	C	T	1871.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr1	225609763	rs12410357	G	A	346.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:59,22:0.27:81
chr1	225609884	rs1056608	A	G	2105.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr1	225611661	rs1056607	C	T	3867.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:110,173:0.61:283
chr1	225611845	rs1340867	C	T	1828.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:44,78:0.64:122
chr1	225685621	rs145776060	TAAG	T	739.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:7,19:0.73:26
chr1	225699681	rs2184778	G	A	125.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:20,9:0.31:29
chr1	225707271	rs34432111	G	GA	267.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.461;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=0.821;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.000;QD=1.83;ReadPosRankSum=0.136;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:106,40:0.27:146
chr1	225965803	rs3738037	C	A	8002.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr1	226016381	rs41266229	G	A	3099.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr1	226016397	rs41266231	G	A	3431.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr1	226019633	rs1051740	T	C	3941.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:91,176:0.66:267
chr1	226019774	rs2260863	G	C	2887.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:1,98:0.99:99
chr1	226026406	rs2234922	A	G	13410.77	.	AC=2;AF=1.00;AN=2;DB;DP=530;set=Intersection	GT:AD:AF:DP	1/1:2,516:1.00:518
chr1	226027067	.	GGTGT	G	639.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.093;ClippingRankSum=0.000;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.84;ReadPosRankSum=3.031;SOR=0.580;set=HC	GT:AD:AF:DP	0/1:15,23:0.61:38
chr1	226027548	rs34143170	C	T	2064.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:45,94:0.68:139
chr1	226032018	rs56301120	G	A	470.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:27,20:0.43:47
chr1	226032154	.	CTGCATG	C	2954	.	AC=1;AF=0.500;AN=2;BRF=0.46;FR=0.5000;HP=2;HapScore=1;MGOF=1;MMLQ=28;MQ=59.91;NF=22;NR=33;PP=2954;QD=20;SC=TGTCACACAACTGCATGTGGC;SbPval=0.32;Source=Platypus;TC=176;TCF=61;TCR=115;TR=55;WE=226032172;WS=226032144;set=Platypus	GT:AD:AF:DP	1/0:121,55:0.31:176
chr1	226032156	rs56122788	GC	G	4179.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=4.040;ClippingRankSum=0.000;DB;DP=397;ExcessHet=3.0103;FS=2.363;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=-1.498;QD=10.77;ReadPosRankSum=2.078;SOR=0.833;set=HC	GT:AD:AF:DP	0/1:269,119:0.31:388
chr1	226032158	.	AT	A	4179.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=5.814;ClippingRankSum=0.000;DP=397;ExcessHet=3.0103;FS=2.925;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=-1.503;QD=10.64;ReadPosRankSum=2.118;SOR=0.853;set=HC	GT:AD:AF:DP	0/1:273,120:0.31:393
chr1	226032160	rs201596741	GTGGC	G	4162.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=4.255;ClippingRankSum=0.000;DB;DP=402;ExcessHet=3.0103;FS=2.925;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=-1.517;QD=10.46;ReadPosRankSum=2.032;SOR=0.865;set=HC	GT:AD:AF:DP	0/1:278,120:0.30:398
chr1	226036309	rs360063	A	G	11208.77	.	AC=2;AF=1.00;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	1/1:2,427:1.00:429
chr1	226044489	rs60955535	G	GC	2430.73	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr1	226050609	rs10158985	C	A	5779.77	.	AC=1;AF=0.500;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	0/1:118,263:0.69:381
chr1	226054681	rs360085	T	A	1086.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:24,44:0.65:68
chr1	226075608	rs12753531	G	A	464.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:17,20:0.54:37
chr1	226076907	.	G	T	146.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.085;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.58;ReadPosRankSum=-0.579;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:29,12:0.29:41
chr1	226125543	rs60825997	G	GA	1222.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	226180026	rs72757014	C	T	1209.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:28,56:0.67:84
chr1	226180807	rs201197753	ACTTT	A	290.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.173;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=3.305;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.70;ReadPosRankSum=-0.908;SOR=0.279;set=HC	GT:AD:AF:DP	0/1:37,14:0.27:51
chr1	226180816	.	C	CTT	128.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.876;ClippingRankSum=0.000;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.68;ReadPosRankSum=2.682;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:22,13:0.37:35
chr1	226252232	rs2036870	C	T	2213.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr1	226253316	rs1849032	G	T	3279.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr1	226334578	rs1219666	G	A	5464.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr1	226352498	rs2306120	T	G	2810.77	.	AC=1;AF=0.500;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	0/1:296,153:0.34:449
chr1	226353521	rs2306121	T	A	2982.77	.	AC=1;AF=0.500;AN=2;DB;DP=514;set=Intersection	GT:AD:AF:DP	0/1:330,171:0.34:501
chr1	226438449	rs6678137	T	C	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.670;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.22;ReadPosRankSum=-1.655;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:13,4:0.24:17
chr1	226455934	rs7519835	C	T	143.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:14,7:0.33:21
chr1	226497389	rs2666424	C	A	17161.77	.	AC=1;AF=0.500;AN=2;DB;DP=1047;set=Intersection	GT:AD:AF:DP	0/1:299,738:0.71:1037
chr1	226550741	rs747659	C	T	2460.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:46,106:0.70:152
chr1	226550924	rs747657	G	C	706.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:81,38:0.32:119
chr1	226553485	rs118165556	A	C	1083.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=49.26;SOR=2.737;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	226553486	rs146042055	C	A	1128.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.03;SOR=2.925;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	226553490	rs34917861	C	A	1151.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.30;SOR=3.098;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	226553494	rs11378196	C	CA	383.92	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.162;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=3.897;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.77;ReadPosRankSum=0.712;SOR=2.584;set=HC	GT:AD:AF:DP	0/1:4,22:0.85:26
chr1	226556094	rs1805400	T	C	2707.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr1	226562112	rs1805401	C	G	1351.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:194,83:0.30:277
chr1	226566726	rs907190	A	C	1241.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr1	226567008	rs732284	C	G	3731.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:81,162:0.67:243
chr1	226567172	rs2271345	A	C	635.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:66,32:0.33:98
chr1	226567563	rs2271343	C	G	665.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:11,25:0.69:36
chr1	226570840	rs1805415	T	C	2455.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr1	226573364	rs1805414	A	G	5715.77	.	AC=1;AF=0.500;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	0/1:151,268:0.64:419
chr1	226573402	rs1805408	T	C	4519.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:125,211:0.63:336
chr1	226576296	rs2293464	G	A	5078.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:91,214:0.70:305
chr1	226580021	rs1805405	G	T	1749.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:58,79:0.58:137
chr1	226580093	rs2280712	C	T	1105.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:17,50:0.75:67
chr1	226589709	rs2666428	C	T	1172.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:41,51:0.55:92
chr1	226589833	rs1805407	T	C	2895.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:69,131:0.66:200
chr1	226836590	rs2298169	A	G	5569.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr1	226923505	rs708776	G	T	9672.77	.	AC=2;AF=1.00;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	1/1:0,354:1.00:354
chr1	226923938	rs6667260	A	C	2792.77	.	AC=1;AF=0.500;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	0/1:284,140:0.33:424
chr1	226924642	rs3754415	C	T	3243.77	.	AC=1;AF=0.500;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	0/1:261,164:0.39:425
chr1	227069677	rs11405	T	C	5731.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr1	227069737	rs6759	C	T	563.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:76,35:0.32:111
chr1	227071364	rs1295643	G	A	248.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:23,14:0.38:37
chr1	227071377	rs1295644	T	C	1320.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	227071525	rs1046240	C	T	953.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.255;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=2.855;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.21;ReadPosRankSum=1.099;SOR=0.543;set=HC	GT:AD:AF:DP	0/1:128,55:0.30:183
chr1	227073410	rs2236910	G	C	8544.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr1	227078955	rs2802267	T	C	2821.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr1	227079222	rs2236915	C	G	411.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:43,22:0.34:65
chr1	227081622	rs10753428	A	G	3114.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr1	227081850	rs2855562	G	A	411.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:53,25:0.32:78
chr1	227085155	rs11802358	G	A	331.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:32,16:0.33:48
chr1	227085462	rs1800672	T	C	10106.77	.	AC=1;AF=0.500;AN=2;DB;DP=675;set=Intersection	GT:AD:AF:DP	0/1:203,464:0.70:667
chr1	227085646	rs1800673	C	T	1350.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:21,53:0.72:74
chr1	227149203	rs11549708	G	A	6411.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr1	227170298	rs2297412	A	G	1778.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr1	227171584	rs3215919	GT	G	1236.73	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	227171736	rs149374145	G	GT	2035.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.455;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=17.120;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=33.37;ReadPosRankSum=2.150;SOR=5.820;set=HC	GT:AD:AF:DP	1/1:4,57:0.93:61
chr1	227171738	rs377335668	G	T	2241.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.052;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=8.932;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=36.75;ReadPosRankSum=1.317;SOR=5.318;set=HC	GT:AD:AF:DP	1/1:2,59:0.97:61
chr1	227171958	rs7530213	G	C	3479.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr1	227172290	rs12593	C	T	2836.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.178;ClippingRankSum=0.000;DB;DP=661;ExcessHet=3.0103;FS=0.586;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.32;ReadPosRankSum=1.290;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:476,181:0.28:657
chr1	227172518	rs1317490	C	T	4639.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr1	227172903	rs2297415	G	A	2656.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr1	227172935	rs2297416	C	G	3900.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr1	227174122	rs41303131	C	G	5701.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr1	227174145	rs7552783	T	C	7902.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr1	227174210	rs3738725	T	C	17664.77	.	AC=2;AF=1.00;AN=2;DB;DP=667;set=Intersection	GT:AD:AF:DP	1/1:0,661:1.00:661
chr1	227181923	rs3795451	C	T	641.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	227182033	rs2802269	G	A	3070.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr1	227182179	rs61833999	C	T	1419.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	227182575	rs1045247	A	G	5674.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr1	227192579	rs2297418	A	C	1975.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr1	227198775	rs12403978	C	G	4055.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:2,135:0.99:137
chr1	227210820	rs11580229	G	A	1449.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr1	227210888	rs11578479	A	T	2858.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:2,108:0.98:110
chr1	227213968	rs7535826	G	T	2624.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr1	227216662	rs1929861	T	C	2676.77	.	AC=1;AF=0.500;AN=2;DB;DP=469;set=Intersection	GT:AD:AF:DP	0/1:315,140:0.31:455
chr1	227218069	rs5781458	C	CAT	543.73	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:30,16:0.35:46
chr1	227218085	rs34370338	CA	C	356.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.112;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=1.977;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.178;QD=4.52;ReadPosRankSum=0.871;SOR=0.951;set=HC	GT:AD:AF:DP	0/1:48,31:0.39:79
chr1	227219314	rs1319103	A	G	155.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:27,9:0.25:36
chr1	227222515	rs113874316	G	GACAA	13387.73	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr1	227228037	rs10495270	A	C	393.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:33,21:0.39:54
chr1	227239739	rs55865118	T	A	547.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.923;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=1.620;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.36;ReadPosRankSum=0.457;SOR=0.299;set=HC	GT:AD:AF:DP	0/1:25,16:0.39:41
chr1	227239746	rs10799381	G	T	532.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.905;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=1.998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.22;ReadPosRankSum=-0.259;SOR=0.234;set=HC	GT:AD:AF:DP	0/1:20,15:0.43:35
chr1	227247016	rs10495266	G	C	1844.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:161,97:0.38:258
chr1	227259884	rs10495263	G	A	2083.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:186,115:0.38:301
chr1	227268488	rs1929853	T	G	1342.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:130,69:0.35:199
chr1	227299978	rs2458521	C	T	1446.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.761;ClippingRankSum=0.000;DB;DP=249;ExcessHet=3.0103;FS=2.404;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.93;ReadPosRankSum=3.409;SOR=0.518;set=HC	GT:AD:AF:DP	0/1:163,81:0.33:244
chr1	227300277	rs488104	G	A	689.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.478;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=0.727;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.93;ReadPosRankSum=0.543;SOR=0.762;set=HC	GT:AD:AF:DP	0/1:102,38:0.27:140
chr1	227330759	rs12139502	A	G	3194.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:86,149:0.63:235
chr1	227330783	rs58442036	G	C	2299.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:52,103:0.66:155
chr1	227333141	rs60079575	T	C	160.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:21,9:0.30:30
chr1	227348126	rs11800062	T	C	118.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=2.105;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.40;ReadPosRankSum=-0.204;SOR=0.263;set=HC	GT:AD:AF:DP	0/1:19,8:0.30:27
chr1	227381326	rs6696485	C	T	479.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:14,19:0.58:33
chr1	227381373	rs3768436	G	T	1224.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:33,53:0.62:86
chr1	227387143	rs3768435	A	G	206.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr1	227387361	rs3768434	A	G	2304.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr1	227401072	rs67834063	GC	G	82.73	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:6,4:0.40:10
chr1	227834233	rs78467777	TC	CC,T	8581.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=473;set=Intersection	GT:AF:DP	1/2:0.61,0.34:441
chr1	227920061	rs1060295	T	G	134.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:32,10:0.24:42
chr1	227920186	rs35575794	G	A	1860.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:231,106:0.31:337
chr1	227920357	rs4837	C	T	1994.77	.	AC=1;AF=0.500;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	0/1:283,116:0.29:399
chr1	227921796	rs11804020	C	T	1000.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:20,43:0.68:63
chr1	227923081	rs7419238	G	A	22509.77	.	AC=2;AF=1.00;AN=2;DB;DP=865;set=Intersection	GT:AD:AF:DP	1/1:0,855:1.00:855
chr1	227935280	rs2236361	C	T	231.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.421;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=1.212;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.41;ReadPosRankSum=0.978;SOR=0.854;set=HC	GT:AD:AF:DP	0/1:78,18:0.19:96
chr1	227935355	rs2236360	T	C	1688.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:191,92:0.33:283
chr1	227954677	rs17851681	C	T	1623.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:227,93:0.29:320
chr1	227958225	rs41305134	T	C	812.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:90,45:0.33:135
chr1	227968107	rs10799448	G	A	469.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:33,23:0.41:56
chr1	228033197	rs9426581	A	G	4489.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr1	228112121	rs4653889	A	G	2273.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:44,91:0.67:135
chr1	228113163	rs3795768	A	G	4781.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr1	228129197	rs631768	T	C	3106.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr1	228289843	rs1128456	C	T	759.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:16,33:0.67:49
chr1	228334418	rs3216021	GAT	G	2531.73	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr1	228334436	rs55873533	G	A	2449.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr1	228352160	rs4348717	T	C	4000.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:1,154:0.99:155
chr1	228362682	rs2298014	G	A	5671.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr1	228402508	rs2776853	C	T	5434.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:2,191:0.99:193
chr1	228404668	rs3795777	T	C	2581.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr1	228405118	rs5781507	G	GA	501.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:1,24:0.96:25
chr1	228412106	rs1771482	T	C	4457.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr1	228412227	rs1771480	TG	CA	12571.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr1	228412308	rs1757152	G	A	8340.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr1	228431095	rs1771455	A	G	4334.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr1	228431235	rs11584385	G	A	898.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	228431930	rs10916293	C	T	11109.77	.	AC=2;AF=1.00;AN=2;DB;DP=423;MQ=59.98;set=Intersection	GT:AD:AF:DP	1/1:0,416:1.00:416
chr1	228432264	rs41305731	A	T	2182.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:52,97:0.65:149
chr1	228432987	rs1757129	G	C	3609.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr1	228433217	rs2487384	A	G	5274.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr1	228434395	rs7517088	T	C	8741.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,325:1.00:325
chr1	228434467	rs7517108	T	C	8414.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr1	228437603	rs6426494	T	C	6811.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr1	228444297	rs7532141	T	G	6419.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr1	228444318	rs7532144	T	G	7516.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr1	228444508	rs371338993	G	A	3873.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:117,172:0.60:289
chr1	228444565	rs7532342	T	A	8495.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr1	228444741	rs3795780	C	T	1169.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	228447513	rs7525075	T	G	10598.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.35;SOR=1.095;set=HC	GT:AD:AF:DP	1/1:0,239:1.00:239
chr1	228447519	rs7525078	T	A	10522.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.16;SOR=1.154;set=HC	GT:AD:AF:DP	1/1:0,233:1.00:233
chr1	228456147	rs878388	T	C	12645.77	.	AC=2;AF=1.00;AN=2;DB;DP=478;set=Intersection	GT:AD:AF:DP	1/1:0,475:1.00:475
chr1	228461129	rs1188724	A	G	5197.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr1	228461408	rs11398292	A	AG	3854.73	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr1	228461757	rs474735	G	A	1269.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.100;ClippingRankSum=0.000;DB;DP=276;ExcessHet=3.0103;FS=3.874;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.77;ReadPosRankSum=0.976;SOR=0.842;set=HC	GT:AD:AF:DP	0/1:193,73:0.27:266
chr1	228464100	rs936884	G	A	214.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:30,12:0.29:42
chr1	228464248	rs1188721	T	G	6465.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr1	228464276	rs1188722	T	C	7804.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:1,287:1.00:288
chr1	228464842	rs936885	C	G	11811.77	.	AC=2;AF=1.00;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	1/1:1,427:1.00:428
chr1	228465346	rs493945	A	G	8364.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr1	228465370	rs867599	T	G	7883.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr1	228466750	rs3795782	T	C	3570.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr1	228466819	rs115119380	C	T	2548.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:75,106:0.59:181
chr1	228471046	rs41303079	C	T	2086.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:1,67:0.99:68
chr1	228471379	rs56168609	G	C	9304.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	1/1:0,333:1.00:333
chr1	228480282	rs1150908	A	G	14110.77	.	AC=2;AF=1.00;AN=2;DB;DP=542;set=Intersection	GT:AD:AF:DP	1/1:1,530:1.00:531
chr1	228480964	rs10158357	A	G	4232.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr1	228482010	rs449133	C	T	9686.77	.	AC=1;AF=0.500;AN=2;DB;DP=625;set=Intersection	GT:AD:AF:DP	0/1:197,418:0.68:615
chr1	228482028	rs4653547	G	C	3358.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.693;ClippingRankSum=0.000;DB;DP=597;ExcessHet=3.0103;FS=2.704;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.70;ReadPosRankSum=-0.057;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:409,180:0.31:589
chr1	228482285	rs1150909	T	C	4020.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr1	228484744	rs72759967	T	C	200.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:20,10:0.33:30
chr1	228486404	rs56021350	C	T	1654.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.333;ClippingRankSum=0.000;DB;DP=373;ExcessHet=3.0103;FS=3.086;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.51;ReadPosRankSum=-1.728;SOR=0.546;set=HC	GT:AD:AF:DP	0/1:261,106:0.29:367
chr1	228492044	rs1150910	G	A	7762.77	.	AC=1;AF=0.500;AN=2;DB;DP=562;set=Intersection	GT:AD:AF:DP	0/1:210,348:0.62:558
chr1	228494357	rs3795795	C	T	4395.77	.	AC=1;AF=0.500;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	0/1:261,146:0.36:407
chr1	228494382	rs1150911	T	G,C	8886.77	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=300;set=Intersection	GT:AF:DP	1/2:0.66,0.34:297
chr1	228494438	rs3795797	C	T	903.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:67,41:0.38:108
chr1	228494696	rs4653939	G	A	1252.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:130,72:0.36:202
chr1	228494790	rs435776	G	A	3828.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:103,168:0.62:271
chr1	228495696	rs419173	T	C	2258.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr1	228496014	rs876180	G	A	1372.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:109,72:0.40:181
chr1	228497053	rs379620	A	G	10024.77	.	AC=2;AF=1.00;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	1/1:0,358:1.00:358
chr1	228503677	rs1150912	A	G	10377.77	.	AC=2;AF=1.00;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	1/1:0,396:1.00:396
chr1	228504472	rs1188732	T	C	5267.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr1	228504591	rs61825301	C	A	937.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:167,62:0.27:229
chr1	228504669	rs61825302	G	A	379.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:56,24:0.30:80
chr1	228504670	rs11810627	C	T	1270.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:24,57:0.70:81
chr1	228504701	rs111792077	G	GCTCC	1943.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:1,46:0.98:47
chr1	228505204	rs4653942	G	A	1698.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:157,95:0.38:252
chr1	228505668	rs1188729	C	G	8681.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr1	228505699	rs1188728	T	C	9537.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:1,351:1.00:352
chr1	228505739	rs3795801	G	A	1986.77	.	AC=1;AF=0.500;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	0/1:289,119:0.29:408
chr1	228506661	rs41305126	G	A	815.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:133,52:0.28:185
chr1	228509427	rs373610	A	G	13192.77	.	AC=2;AF=1.00;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	1/1:2,466:1.00:468
chr1	228520763	rs384553	G	A	1120.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:25,40:0.62:65
chr1	228520880	rs416564	C	T	747.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:19,31:0.62:50
chr1	228520973	rs369909	C	G	2462.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:48,113:0.70:161
chr1	228522029	rs57891072	TA	T	843.73	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:13,26:0.67:39
chr1	228522047	rs520552	A	T	833.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:16,34:0.68:50
chr1	228523005	rs60787858	T	TG	119.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.903;ClippingRankSum=-0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.51;MQRankSum=0.524;QD=11.97;ReadPosRankSum=0.210;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:4,6:0.60:10
chr1	228523442	rs1684868	T	C	3461.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.152;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=7.226;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=30.10;ReadPosRankSum=1.185;SOR=0.247;set=HC	GT:AD:AF:DP	0/1:30,85:0.74:115
chr1	228523447	rs10799473	T	C	4898.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.49;SOR=1.285;set=HC	GT:AD:AF:DP	1/1:0,121:1.00:121
chr1	228523448	rs1757161	G	A	3515.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.383;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=3.970;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.82;ReadPosRankSum=1.525;SOR=0.370;set=HC	GT:AD:AF:DP	0/1:33,89:0.73:122
chr1	228523618	rs1757160	G	A	2351.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:45,97:0.68:142
chr1	228524919	rs3795807	G	A	6824.77	.	AC=1;AF=0.500;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	0/1:126,295:0.70:421
chr1	228524961	rs3795808	C	A	8314.77	.	AC=1;AF=0.500;AN=2;DB;DP=513;set=Intersection	GT:AD:AF:DP	0/1:136,372:0.73:508
chr1	228525008	rs3795809	G	A	1709.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.644;ClippingRankSum=0.000;DB;DP=557;ExcessHet=3.0103;FS=2.983;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.10;ReadPosRankSum=-0.617;SOR=0.960;set=HC	GT:AD:AF:DP	0/1:424,128:0.23:552
chr1	228525627	rs1757127	C	A	4174.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:91,196:0.68:287
chr1	228525898	rs1188717	C	G	3949.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:68,159:0.70:227
chr1	228526011	rs11577699	C	T	1276.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.032;ClippingRankSum=0.000;DB;DP=405;ExcessHet=3.0103;FS=0.891;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.19;ReadPosRankSum=-0.198;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:305,95:0.24:400
chr1	228526486	rs58480216	G	A	1136.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:25,47:0.65:72
chr1	228526665	rs505629	T	C	3068.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:43,143:0.77:186
chr1	228526742	.	C	CCACACA	454.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.908;ClippingRankSum=-0.000;DP=24;ExcessHet=3.0103;FS=8.953;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=28.42;ReadPosRankSum=-0.802;SOR=3.030;set=HC	GT:AD:AF:DP	0/1:4,12:0.75:16
chr1	228528412	rs1150916	G	A	7151.77	.	AC=1;AF=0.500;AN=2;DB;DP=474;set=Intersection	GT:AD:AF:DP	0/1:148,322:0.69:470
chr1	228528563	rs1188710	C	G	4936.77	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:126,215:0.63:341
chr1	228529429	rs141828109	A	AGACGGCTCAGCCAGCCTGTGGCATGG	1122.73	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:12,28:0.70:40
chr1	228539300	rs3795812	G	A	95.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:3,5:0.62:8
chr1	228559654	rs111616349	G	A	3425.77	.	AC=1;AF=0.500;AN=2;DB;DP=561;set=Intersection	GT:AD:AF:DP	0/1:365,188:0.34:553
chr1	228560139	rs498382	A	G	5307.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr1	228560700	rs512253	T	C	1585.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.729;ClippingRankSum=0.000;DB;DP=315;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.07;ReadPosRankSum=-0.291;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:216,97:0.31:313
chr1	228601638	rs472594	T	C	2697.77	.	AC=1;AF=0.500;AN=2;DB;DP=480;set=Intersection	GT:AD:AF:DP	0/1:327,150:0.31:477
chr1	228612838	rs2230656	G	T	11134.77	.	AC=2;AF=1.00;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	1/1:0,387:1.00:387
chr1	228613052	rs1188474	T	C	7281.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr1	228645063	rs10916317	A	G	5799.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr1	228646356	.	C	CGTGT	221.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.724;ClippingRankSum=0.000;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.04;ReadPosRankSum=3.840;SOR=0.839;set=HC	GT:AD:AF:DP	0/1:33,11:0.25:44
chr1	228681749	rs3795817	C	T	1331.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:23,52:0.69:75
chr1	228699477	rs6665115	T	C	10528.77	.	AC=1;AF=0.500;AN=2;DB;DP=690;set=Intersection	GT:AD:AF:DP	0/1:217,461:0.68:678
chr1	228785805	rs10916348	C	T	289.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:31,15:0.33:46
chr1	229407233	rs7519709	G	C	994.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	229422193	rs237764	T	C	2073.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr1	229438530	rs72183342	CT	C	94.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.186;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=1.200;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.16;ReadPosRankSum=-0.891;SOR=0.397;set=HC	GT:AD:AF:DP	0/1:61,21:0.26:82
chr1	229438828	rs237787	G	A	1604.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr1	229461024	rs2282083	C	T	10714.77	.	AC=2;AF=1.00;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	1/1:2,400:1.00:402
chr1	229478045	.	G	A	2118.77	.	AC=1;AF=0.500;AN=2;DP=131;set=Intersection	GT:AD:AF:DP	0/1:29,97:0.77:126
chr1	229567660	rs201427429	C	CG	2228.73	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:67,93:0.58:160
chr1	229567663	rs6673359	C	G	4128.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:61,110:0.64:171
chr1	229567683	rs59228224	TC	T	2652.73	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:39,80:0.67:119
chr1	229568231	rs527621	T	G	1882.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr1	229568243	.	C	CGGCGGG	784.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.453;ClippingRankSum=0.000;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.42;ReadPosRankSum=1.425;SOR=0.544;set=HC	GT:AD:AF:DP	0/1:19,16:0.46:35
chr1	229568632	rs11803533	A	G	16529.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.317;ClippingRankSum=0.000;DB;DP=667;ExcessHet=3.0103;FS=1.800;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.08;ReadPosRankSum=-0.238;SOR=0.797;set=HC	GT:AD:AF:DP	0/1:243,416:0.63:659
chr1	229568637	rs41271481	C	G	16463.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.381;ClippingRankSum=0.000;DB;DP=663;ExcessHet=3.0103;FS=0.541;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.14;ReadPosRankSum=0.503;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:244,411:0.63:655
chr1	229568934	rs57214022	AG	A	1727.73	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:40,69:0.63:109
chr1	229580593	rs67514588	C	CA	724.73	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:13,43:0.77:56
chr1	229596260	rs1328219	A	G	705.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:19,27:0.59:46
chr1	229599225	rs7525324	T	C	1381.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:19,56:0.75:75
chr1	229600336	rs2904	A	C	1713.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:38,68:0.64:106
chr1	229602284	rs7555749	C	A	1062.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:19,42:0.69:61
chr1	229619651	rs147756537	C	T	602.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:12,27:0.69:39
chr1	229622162	rs1065675	A	G	8641.77	.	AC=1;AF=0.500;AN=2;DB;DP=646;set=Intersection	GT:AD:AF:DP	0/1:246,390:0.61:636
chr1	229623131	rs6678721	G	C	3370.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.615;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=1.656;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.54;ReadPosRankSum=-1.073;SOR=0.938;set=HC	GT:AD:AF:DP	0/1:48,84:0.64:132
chr1	229623137	rs4925493	T	C	3514.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.714;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.91;ReadPosRankSum=-0.469;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:55,92:0.63:147
chr1	229623338	rs1065674	T	C	4956.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;MQ=60.21;set=Intersection	GT:AD:AF:DP	0/1:120,230:0.66:350
chr1	229623409	rs10653575	A	ATTTG	2690.73	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:21,69:0.77:90
chr1	229631193	rs3818237	T	C	445.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:10,19:0.66:29
chr1	229631734	rs11805194	T	C	2787.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:84,135:0.62:219
chr1	229635521	rs10916495	A	G	4970.77	.	AC=1;AF=0.500;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	0/1:118,226:0.66:344
chr1	229636388	rs6673421	A	G	651.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:8,23:0.74:31
chr1	229637645	rs754022	C	A	2174.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:48,87:0.64:135
chr1	229637881	rs2381108	T	G	4253.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:81,187:0.70:268
chr1	229654053	rs115488729	T	C	972.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.354;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=4.444;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.000;QD=6.16;ReadPosRankSum=-0.081;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:110,48:0.30:158
chr1	229663064	rs113712941	GAGGAA	G	6982.73	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr1	229676617	rs56373110	T	C	178.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:13,9:0.41:22
chr1	229683264	rs3738187	G	A	923.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:14,36:0.72:50
chr1	229693846	rs4148757	A	C	121.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.282;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.53;ReadPosRankSum=-0.000;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:2,7:0.78:9
chr1	229738236	rs4925500	G	A	4131.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:90,180:0.67:270
chr1	229750036	rs7547607	C	T	3725.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:118,173:0.59:291
chr1	229750415	.	T	C	815.77	.	AC=1;AF=0.500;AN=2;DP=48;set=Intersection	GT:AD:AF:DP	0/1:18,30:0.62:48
chr1	229783236	rs6587349	T	C	5462.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr1	229790048	rs7521953	A	G	1517.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:180,84:0.32:264
chr1	229795070	rs1048306	T	G	557.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:61,33:0.35:94
chr1	230371883	rs3811488	G	A	760.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:87,39:0.31:126
chr1	230372061	rs3811486	A	G	1413.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:164,77:0.32:241
chr1	230386341	rs2273966	T	A	559.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:160,43:0.21:203
chr1	230391234	rs41315597	C	T	308.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:45,18:0.29:63
chr1	230398241	rs16851269	C	T	430.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:89,30:0.25:119
chr1	230398445	rs3811485	G	A	190.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.556;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.18;ReadPosRankSum=-1.759;SOR=0.484;set=HC	GT:AD:AF:DP	0/1:46,14:0.23:60
chr1	230451935	rs144363709	C	CAT	2707.73	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr1	230451978	rs11122492	G	A	3369.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr1	230459433	rs35048134	GC	G	968.73	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:13,39:0.75:52
chr1	230461079	rs2306813	G	A	1104.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:102,60:0.37:162
chr1	230473103	rs10864744	A	C	2380.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:30,92:0.75:122
chr1	230497940	rs828479	G	T	5661.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr1	230498232	rs2820384	C	T	2005.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr1	230503684	rs2632571	C	T	2083.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr1	230513128	rs828463	G	A	617.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	230819479	rs5781597	G	GT	898.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.61;MQRankSum=0.633;QD=15.23;ReadPosRankSum=1.081;SOR=1.412;set=HC	GT:AD:AF:DP	1/1:7,52:0.88:59
chr1	230820763	rs150768186	C	CACATT	3009.73	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr1	230822607	rs1536591	G	A	3747.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr1	230825942	rs3000064	A	G	2570.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr1	230828987	rs2478534	C	A	6853.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr1	230841687	rs7080	T	C	11161.77	.	AC=2;AF=1.00;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	1/1:0,403:1.00:403
chr1	230883466	rs12143120	C	T	5486.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:107,240:0.69:347
chr1	230883484	rs6690251	T	C	7755.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:1,271:1.00:272
chr1	230883499	rs6690254	T	C	6332.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr1	230891248	rs2493145	C	T	1012.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	230898231	rs2282318	T	A	1559.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr1	230898494	rs2282319	C	T	11619.77	.	AC=2;AF=1.00;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	1/1:2,434:1.00:436
chr1	230898615	rs3215985	G	GA	2304.73	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr1	230903234	rs11122590	A	G	821.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	230903350	rs3828126	T	C	3750.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr1	230904911	rs11122593	C	T	3712.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr1	230910485	rs10607758	CT	C	71.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.702;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.11;ReadPosRankSum=-1.639;SOR=0.460;set=HC	GT:AD:AF:DP	0/1:19,15:0.44:34
chr1	230914612	rs12130847	A	G	1133.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	230928351	rs2282321	C	T	1599.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	230933898	rs2297831	C	T	4895.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr1	231042732	rs3811502	T	A	4565.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr1	231047310	rs10580953	TAC	T	1300.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	231047392	rs2153049	G	A	188.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	231057310	rs2275334	C	T	829.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	231059784	rs3748774	C	T	1057.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	231060736	rs3748775	T	C	3415.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr1	231064578	rs5781609	T	TCTC	1462.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	231064611	rs950029	G	A	1728.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr1	231067236	rs11122624	C	T	7404.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr1	231067318	rs11122625	G	T	2587.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr1	231069652	rs1890351	A	C	1234.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	231081304	rs6673085	T	G	1529.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	231093785	rs59207624	CT	C	1038.73	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:26,62:0.70:88
chr1	231161878	.	T	C	1251.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.345;ClippingRankSum=0.000;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=0.752;QD=13.18;ReadPosRankSum=-0.931;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:33,62:0.65:95
chr1	231377081	rs518686	C	T	2397.77	.	AC=1;AF=0.500;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	0/1:243,129:0.35:372
chr1	231400905	rs849714	A	G	516.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:29,22:0.43:51
chr1	231401204	rs6702011	T	C	893.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:112,47:0.30:159
chr1	231401596	rs532226	T	C	1505.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.449;ClippingRankSum=0.000;DB;DP=251;ExcessHet=3.0103;FS=0.542;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.05;ReadPosRankSum=-0.761;SOR=0.611;set=HC	GT:AD:AF:DP	0/1:172,77:0.31:249
chr1	231401902	rs574553	G	A	1394.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:160,79:0.33:239
chr1	231480507	rs1009227	A	G	648.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.21;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	231486908	.	T	C	255	.	AC=2;AF=1.00;AN=2;BRF=0.13;FR=1.0000;HP=4;HapScore=2;MGOF=28;MMLQ=28;MQ=60.0;NF=11;NR=0;PP=255;QD=26.3428375043;SC=CTTTCTCTCCTAAAATAGAAC;SbPval=1.0;Source=Platypus;TC=12;TCF=11;TCR=1;TR=11;WE=231486916;WS=231486898;set=Platypus	GT:AD:AF:DP	1/1:1,11:0.92:12
chr1	231486951	rs57463298	TAA	T	67.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.465;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.47;ReadPosRankSum=0.619;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:2,6:0.75:8
chr1	231486989	rs2474633	A	C	726.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	231487017	rs2474634	T	C	1561.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr1	231488524	rs2437150	C	T	9212.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,323:1.00:323
chr1	231502230	.	T	TA	244	.	AC=1;AF=0.500;AN=2;BRF=0.5;FR=0.5000;HP=14;HapScore=3;MGOF=16;MMLQ=23;MQ=60.0;NF=4;NR=9;PP=244;QD=19.0769230769;SC=ACCTGCAAGGTAAAAAAAAAA;SbPval=0.59;Source=Platypus;TC=39;TCF=12;TCR=27;TR=13;WE=231502253;WS=231502220;set=Platypus	GT:AD:AF:DP	1/0:26,13:0.33:39
chr1	231502244	rs371204614	AT	A	37.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:66,17:0.20:83
chr1	231502245	rs1435167	T	A	1018.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.522;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.962;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.27;ReadPosRankSum=-1.891;SOR=0.553;set=HC	GT:AD:AF:DP	0/1:20,63:0.76:83
chr1	231502310	rs1435166	T	C	1703.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr1	231506557	rs2256908	G	A	790.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	231557164	rs61750991	C	G	1155.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.612;ClippingRankSum=0.000;DB;DP=340;ExcessHet=3.0103;FS=0.993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.41;ReadPosRankSum=-2.088;SOR=0.762;set=HC	GT:AD:AF:DP	0/1:259,80:0.24:339
chr1	231664607	rs41303127	C	T	4796.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:2,180:0.99:182
chr1	231931048	rs2273890	T	C	2428.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:46,100:0.68:146
chr1	231936016	rs2759354	A	G	8687.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:2,314:0.99:316
chr1	231954872	rs11588937	C	T	88.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:5,5:0.50:10
chr1	231955067	rs138356227	A	C	367.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:10,16:0.62:26
chr1	231956086	rs11122343	A	T	1675.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr1	232002392	rs3082	A	G	3233.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr1	232094729	rs2794273	G	A	502.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:4,19:0.83:23
chr1	232098847	rs12754734	C	T	3026.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:67,131:0.66:198
chr1	232098859	rs4266866	C	G	2618.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:53,109:0.67:162
chr1	232144598	rs821616	A	T	1827.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:32,83:0.72:115
chr1	232144887	rs821617	A	G	1067.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:7,44:0.86:51
chr1	232534957	rs12043251	T	C	3050.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:71,133:0.65:204
chr1	232535030	rs629939	C	T	5368.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr1	232538252	.	A	AGAGAGTCAATCGAGCATTTTT	1688.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.238;ClippingRankSum=0.000;DP=109;ExcessHet=3.0103;FS=2.236;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.13;ReadPosRankSum=0.339;SOR=1.148;set=HC	GT:AD:AF:DP	0/1:31,42:0.58:73
chr1	232564096	rs34949132	CT	C	135.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.263;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.11;ReadPosRankSum=1.002;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:15,18:0.55:33
chr1	232564297	rs3210731	T	A	2398.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:55,111:0.67:166
chr1	232568293	rs1547741	A	G	2836.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:1,100:0.99:101
chr1	232574921	rs2275307	T	C	7825.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:1,288:1.00:289
chr1	232579597	rs4649372	T	A	819.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	232581247	rs1409369	C	G	876.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	232581436	rs12757779	G	A	2414.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr1	232581667	rs12723697	G	T	679.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	232597987	rs12142629	T	A	9423.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	1/1:0,356:1.00:356
chr1	232601241	rs12145798	T	C	1509.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:9,58:0.87:67
chr1	232601261	rs34840482	CAT	C	993.73	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:12,38:0.76:50
chr1	232607050	rs12116796	T	A	2178.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:1,76:0.99:77
chr1	232607094	rs12116822	T	C	3883.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:1,139:0.99:140
chr1	232629170	rs11294872	TA	T	5197.73	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:7,248:0.97:255
chr1	232629475	rs3737839	C	T	1165.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	232650750	rs3795366	A	G	13545.77	.	AC=2;AF=1.00;AN=2;DB;DP=516;set=Intersection	GT:AD:AF:DP	1/1:0,506:1.00:506
chr1	232650867	rs4649383	C	T	18633.77	.	AC=2;AF=1.00;AN=2;DB;DP=710;set=Intersection	GT:AD:AF:DP	1/1:8,696:0.99:704
chr1	232941153	rs12409898	C	T	2976.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:60,123:0.67:183
chr1	232941390	rs2814526	C	G	1773.77	.	AC=1;AF=0.500;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	0/1:231,103:0.31:334
chr1	233086456	rs13381	T	C	2410.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.587;ClippingRankSum=0.000;DB;DP=390;ExcessHet=3.0103;FS=1.248;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.18;ReadPosRankSum=-2.096;SOR=0.609;set=HC	GT:AD:AF:DP	0/1:253,137:0.35:390
chr1	233113827	rs1045158	G	T	504.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:98,33:0.25:131
chr1	233120192	rs113070999	G	A	1754.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:180,100:0.36:280
chr1	233121791	rs12038915	G	A	514.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:93,34:0.27:127
chr1	233122127	rs41309639	C	T	805.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:104,48:0.32:152
chr1	233134086	rs56231757	C	T	1632.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:137,88:0.39:225
chr1	233137225	rs140788891	CATAA	C	3186.73	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.47;QD=43.65;SOR=2.271;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr1	233152910	rs11271054	A	AAAAGCAAGATTTTGAGTCCTCACAGCTATTCT	556.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.388;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=5.481;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.65;ReadPosRankSum=0.666;SOR=2.133;set=HC	GT:AD:AF:DP	0/1:24,14:0.37:38
chr1	233296891	rs2296515	T	C	904.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:24,38:0.61:62
chr1	233296908	rs2296516	T	G	1035.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:27,43:0.61:70
chr1	233335875	rs184991675	G	A	4066.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.431;ClippingRankSum=0.000;DB;DP=274;ExcessHet=3.0103;FS=1.662;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.58;ReadPosRankSum=-0.455;SOR=0.585;set=HC	GT:AD:AF:DP	0/1:86,175:0.67:261
chr1	233336044	rs12024129	T	A	3514.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:84,149:0.64:233
chr1	233337947	.	C	CT	39.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.211;ClippingRankSum=0.000;DP=181;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.26;ReadPosRankSum=-0.507;SOR=0.762;set=HC	GT:AD:AF:DP	0/1:131,23:0.15:154
chr1	233353951	rs56159240	A	G	569.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.579;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.65;ReadPosRankSum=2.246;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:7,22:0.76:29
chr1	233353955	.	CAAAAAAA	C	489.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.169;ClippingRankSum=0.000;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.26;ReadPosRankSum=1.487;SOR=0.430;set=HC	GT:AD:AF:DP	0/1:3,19:0.86:22
chr1	233354017	rs701182	T	C	197.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	233395214	rs2139998	T	A	1370.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	233489499	rs7539016	A	G	1065.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr1	233489529	rs7549137	G	A	2001.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr1	233489707	rs7551511	G	T	5429.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:21,229:0.92:250
chr1	233490536	rs137943316	A	AATGTCTTGGGGATAATCTG	7297.73	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr1	233490543	rs2049182	G	A	7458.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr1	233490764	rs4649219	G	T	2674.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr1	233490776	rs4649220	C	T	2100.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr1	233511913	rs35806537	TAGAG	T	235.73	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:21,8:0.28:29
chr1	233515413	rs1402815	G	A	1265.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:221,81:0.27:302
chr1	233749855	rs2795294	A	G	696.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	234040742	rs12136133	A	C	812.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.274;ClippingRankSum=0.000;DB;DP=239;ExcessHet=3.0103;FS=0.556;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.46;ReadPosRankSum=-1.108;SOR=0.750;set=HC	GT:AD:AF:DP	0/1:177,58:0.25:235
chr1	234041422	rs57010808	G	C	4522.77	.	AC=1;AF=0.500;AN=2;DB;DP=800;set=Intersection	GT:AD:AF:DP	0/1:533,259:0.33:792
chr1	234458668	rs35870005	G	A	407.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:25,19:0.43:44
chr1	234541622	rs2271444	G	T	717.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.588;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=5.011;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.32;ReadPosRankSum=1.155;SOR=1.198;set=HC	GT:AD:AF:DP	0/1:95,40:0.30:135
chr1	234546245	rs1141264	C	T	802.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:108,47:0.30:155
chr1	234561394	rs199988220	ATAATT	A	687.73	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:38,20:0.34:58
chr1	234561590	rs4920240	T	A	140.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:17,9:0.35:26
chr1	234563060	rs443685	T	C	1238.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.443;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=3.329;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.48;ReadPosRankSum=1.552;SOR=0.387;set=HC	GT:AD:AF:DP	0/1:25,55:0.69:80
chr1	234563556	rs10910434	T	A	214.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:39,14:0.26:53
chr1	234564864	rs71701823	GAA	G	1007.73	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:56,29:0.34:85
chr1	234565078	.	G	GA	680.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.521;ClippingRankSum=0.000;DP=248;ExcessHet=3.0103;FS=1.284;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.564;QD=3.12;ReadPosRankSum=2.257;SOR=0.839;set=HC	GT:AD:AF:DP	0/1:154,64:0.29:218
chr1	234565176	rs111283864	C	T	2390.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.685;ClippingRankSum=0.000;DB;DP=630;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=1.705;QD=3.84;ReadPosRankSum=-0.096;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:463,160:0.26:623
chr1	234566085	rs2236587	A	G	981.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:160,62:0.28:222
chr1	234569192	rs3754311	T	C	2013.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:217,113:0.34:330
chr1	234582457	rs270527	C	T	849.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:61,42:0.41:103
chr1	234582720	rs139816698	C	T	557.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:91,33:0.27:124
chr1	234584176	rs115691704	T	G	1046.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:138,62:0.31:200
chr1	234584288	rs114916639	G	A	2701.77	.	AC=1;AF=0.500;AN=2;DB;DP=577;set=Intersection	GT:AD:AF:DP	0/1:412,161:0.28:573
chr1	234606793	rs12745505	T	C	106.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:8,5:0.38:13
chr1	234743237	rs7543281	G	A	1514.77	.	AC=1;AF=0.500;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	0/1:257,91:0.26:348
chr1	234744480	rs11502	G	A	1554.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:35,71:0.67:106
chr1	234745009	rs7545855	A	G	2784.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.107;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.32;ReadPosRankSum=-1.204;SOR=0.843;set=HC	GT:AD:AF:DP	1/1:3,107:0.97:110
chr1	234953834	rs200007946	A	C	75.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.68;QD=25.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	234953875	rs138215498	C	CA	221.75	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.71;QD=27.72;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	235301496	rs367780945	CA	C	64.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.244;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.67;ReadPosRankSum=-1.087;SOR=0.596;set=HC	GT:AD:AF:DP	0/1:72,25:0.26:97
chr1	235543262	rs11425048	C	CA	622.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.152;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.32;ReadPosRankSum=1.002;SOR=1.209;set=HC	GT:AD:AF:DP	0/1:11,44:0.80:55
chr1	235543476	rs145735844	TTGTGTGTGTGTGTGTG	T,TTG	4175.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.306;ClippingRankSum=0.000;DB;DP=261;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.12;MQRankSum=0.236;QD=39.39;ReadPosRankSum=1.051;SOR=0.708;set=HC	GT:AD:AF:DP	1/2:1,31,74:0.29,0.70:106
chr1	235564924	rs17543709	G	T	792.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:108,45:0.29:153
chr1	235594182	rs2291687	A	G	918.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	235594250	rs2291688	A	G	232.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	235598973	rs2055127	C	T	4011.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr1	235601958	rs3819974	G	T	1949.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:1,70:0.99:71
chr1	235611535	.	CA	C	123.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.632;ClippingRankSum=0.000;DP=69;ExcessHet=3.0103;FS=3.116;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.58;ReadPosRankSum=0.798;SOR=1.302;set=HC	GT:AD:AF:DP	0/1:28,20:0.42:48
chr1	235619091	.	G	A	3958.77	.	AC=1;AF=0.500;AN=2;DP=268;set=Intersection	GT:AD:AF:DP	0/1:82,174:0.68:256
chr1	235659621	.	GA	G	62.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.595;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=1.657;MLEAC=1;MLEAF=0.500;MQ=60.36;MQRankSum=1.455;QD=2.41;ReadPosRankSum=-0.255;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:17,9:0.35:26
chr1	235715523	rs14326	A	G	3086.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:58,135:0.70:193
chr1	235715556	rs423026	C	G	2294.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:38,92:0.71:130
chr1	235715601	rs400948	A	G	1008.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:18,39:0.68:57
chr1	235826382	rs36014994	TA	T	923.73	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:3,53:0.95:56
chr1	235827443	rs3819013	T	C	1377.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	235827641	rs12092604	C	T	1050.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	235856901	rs3754232	G	A	789.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	235860340	rs7541057	C	T	2130.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr1	235887276	rs6667717	G	T	974.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	235896726	rs6429275	C	T	2896.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr1	235910392	rs6676149	A	G	1510.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	235910542	rs3754234	C	T	4056.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr1	235918688	rs149138177	CAAAAG	C	3136.73	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr1	235922228	rs3738519	T	C	764.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:97,44:0.31:141
chr1	235940450	rs2273584	C	T	3354.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr1	235945186	rs72763416	G	A	1009.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:26,45:0.63:71
chr1	235945294	rs6696123	T	C	6317.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:1,239:1.00:240
chr1	235955150	rs11583387	G	A	6116.77	.	AC=1;AF=0.500;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	0/1:126,268:0.68:394
chr1	235963454	rs72763422	C	A	211.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:3,10:0.77:13
chr1	235971763	rs3768066	A	G	2745.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:51,127:0.71:178
chr1	235972435	rs3820553	T	C	12123.77	.	AC=2;AF=1.00;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	1/1:2,431:1.00:433
chr1	235972867	rs1063128	T	C	16492.77	.	AC=2;AF=1.00;AN=2;DB;DP=591;set=Intersection	GT:AD:AF:DP	1/1:0,586:1.00:586
chr1	236142565	rs1536132	T	C	1317.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:15,50:0.77:65
chr1	236205121	rs4297282	T	C	1003.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:18,37:0.67:55
chr1	236208688	rs10733131	AT	GA	1872.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;JOINED;set=Intersection	GT:AD:AF:DP	0/1:28,46:0.62:74
chr1	236208773	rs10733133	C	T	4881.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.321;ClippingRankSum=0.000;DB;DP=335;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.97;ReadPosRankSum=-0.101;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:105,221:0.68:326
chr1	236209024	rs3768088	C	G	2333.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:46,99:0.68:145
chr1	236209081	rs3768089	G	A	787.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:7,28:0.80:35
chr1	236212038	rs6665008	G	A	1580.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:40,70:0.64:110
chr1	236305885	rs7522547	G	A	748.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:23,30:0.57:53
chr1	236393654	rs2812471	A	G	1247.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	236395979	rs11388266	C	CT	318.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.096;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=6.662;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.18;ReadPosRankSum=-0.848;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:2,19:0.90:21
chr1	236413230	rs2477599	T	A	3529.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr1	236433135	rs3834089	AT	A	2317.73	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr1	236444879	rs11281666	G	GGCCCGGCCCT	554.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.155;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=3.638;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.85;ReadPosRankSum=-0.854;SOR=0.245;set=HC	GT:AD:AF:DP	0/1:22,13:0.37:35
chr1	236557771	rs966365	G	A	6112.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr1	236557928	rs966364	G	A	1906.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr1	236572389	rs659901	G	A	698.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.725;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.29;ReadPosRankSum=1.698;SOR=0.314;set=HC	GT:AD:AF:DP	1/1:1,29:0.97:30
chr1	236572475	rs669710	A	G	1663.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:45,74:0.62:119
chr1	236577761	rs625444	T	C	214.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.440;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.49;MQRankSum=-1.258;QD=10.74;ReadPosRankSum=0.041;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:7,13:0.65:20
chr1	236577762	rs625443	C	T,CT	355.73	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.51;QD=19.76;SOR=3.500;set=HC	GT:AD:AF:DP	1/2:0,13,5:0.72,0.28:18
chr1	236590497	rs1759388	C	G	264.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:16,12:0.43:28
chr1	236590563	rs1778861	C	T	835.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:18,34:0.65:52
chr1	236590629	rs636378	C	T	1497.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:28,67:0.71:95
chr1	236590659	rs636048	G	C	1665.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:28,79:0.74:107
chr1	236590816	rs635487	T	G	762.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:12,34:0.74:46
chr1	236645670	rs604070	C	T	4019.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:82,179:0.69:261
chr1	236714155	.	A	C	3246.77	.	AC=1;AF=0.500;AN=2;DP=205;set=Intersection	GT:AD:AF:DP	0/1:60,142:0.70:202
chr1	236714292	.	TA	T	667.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.101;ClippingRankSum=0.000;DP=186;ExcessHet=3.0103;FS=4.683;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.000;QD=4.51;ReadPosRankSum=-0.169;SOR=0.384;set=HC	GT:AD:AF:DP	0/1:76,72:0.49:148
chr1	236721731	rs819431	T	C	11629.77	.	AC=2;AF=1.00;AN=2;DB;DP=453;set=Intersection	GT:AD:AF:DP	1/1:0,444:1.00:444
chr1	236722182	rs819432	A	T	1854.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr1	236729956	rs653737	T	C	2135.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:218,118:0.35:336
chr1	236732185	rs11377328	T	TA	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.058;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.66;ReadPosRankSum=1.105;SOR=0.394;set=HC	GT:AD:AF:DP	0/1:41,10:0.20:51
chr1	236767182	.	G	GA	100.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.642;ClippingRankSum=0.000;DP=192;ExcessHet=3.0103;FS=1.835;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.57;ReadPosRankSum=-0.750;SOR=0.925;set=HC	GT:AD:AF:DP	0/1:144,34:0.19:178
chr1	236882110	rs1341865	G	A	3887.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr1	236882303	rs1341864	T	C	2666.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr1	236883240	rs1768053	T	C	559.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	236883421	rs1341863	C	T	5046.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr1	236883564	rs1341862	G	A	2151.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr1	236890781	rs1768056	A	G	709.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	236894647	rs819640	G	A	11628.77	.	AC=2;AF=1.00;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	1/1:0,423:1.00:423
chr1	236897633	rs707203	A	G	7325.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr1	236897926	rs75131881	G	A	640.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:21,26:0.55:47
chr1	236899701	rs3768124	G	A	601.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:60,30:0.33:90
chr1	236899899	rs11355106	TC	T	1138.73	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:128,53:0.29:181
chr1	236900598	rs7521191	C	T	223.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.602;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=2.688;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=15.98;ReadPosRankSum=0.983;SOR=1.911;set=HC	GT:AD:AF:DP	0/1:6,8:0.57:14
chr1	236900601	.	A	T	223.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.253;ClippingRankSum=-0.000;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=44.75;ReadPosRankSum=-0.842;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:1,4:0.80:5
chr1	236902532	rs34704730	ATT	A	898.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.340;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=1.685;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.95;ReadPosRankSum=-0.228;SOR=0.915;set=HC	GT:AD:AF:DP	0/1:104,47:0.31:151
chr1	236902560	rs7527525	C	G	1437.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.090;ClippingRankSum=0.000;DB;DP=257;ExcessHet=3.0103;FS=2.330;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.68;ReadPosRankSum=0.628;SOR=0.864;set=HC	GT:AD:AF:DP	0/1:173,80:0.32:253
chr1	236902594	rs2288601	C	G	10361.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:0,382:1.00:382
chr1	236902865	rs2288602	A	C	1312.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.293;ClippingRankSum=0.000;DB;DP=277;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.77;ReadPosRankSum=2.615;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:194,81:0.29:275
chr1	236902955	rs7544174	T	C	697.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:77,38:0.33:115
chr1	236907847	rs3738543	G	A	141.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:42,11:0.21:53
chr1	236910863	rs10802557	T	C	118.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:15,8:0.35:23
chr1	236911122	rs79971593	C	T	466.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:75,27:0.26:102
chr1	236911221	rs79149380	G	T	62.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.144;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.62;ReadPosRankSum=0.400;SOR=0.336;set=HC	GT:AD:AF:DP	0/1:19,5:0.21:24
chr1	236914610	rs3738545	G	C	454.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:18,19:0.51:37
chr1	236924506	rs2282366	A	G	2960.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:85,135:0.61:220
chr1	236925844	rs12063382	G	A	3769.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:95,171:0.64:266
chr1	236972186	rs12759827	A	G	1844.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:41,75:0.65:116
chr1	236978992	rs5781924	T	TTCTG	3420.73	.	AC=1;AF=0.500;AN=2;DB;DP=284;MQ=60.08;set=Intersection	GT:AD:AF:DP	0/1:168,95:0.36:263
chr1	237023333	rs10925254	T	C	128.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.818;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.15;ReadPosRankSum=-0.461;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:17,8:0.32:25
chr1	237037998	rs150727404	CT	C	116.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.336;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.54;ReadPosRankSum=-0.945;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:54,22:0.29:76
chr1	237038161	rs1770449	T	C	2436.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:52,116:0.69:168
chr1	237048500	rs1805087	A	G	651.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:84,38:0.31:122
chr1	237048562	rs2275566	G	A	122.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.783;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=2.383;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.56;ReadPosRankSum=0.819;SOR=1.656;set=HC	GT:AD:AF:DP	0/1:39,9:0.19:48
chr1	237057608	rs2297965	G	A	1283.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:135,68:0.33:203
chr1	237058828	rs1131449	C	T	1327.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:117,69:0.37:186
chr1	237058996	rs75739277	C	CTATT	57.73	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:10,3:0.23:13
chr1	237060433	rs3820571	G	T	1418.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:162,76:0.32:238
chr1	237060945	rs67705775	CT	C	222.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.593;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=2.401;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.397;QD=3.14;ReadPosRankSum=1.707;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:42,29:0.41:71
chr1	237061056	rs2853522	A	C	155.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:22,9:0.29:31
chr1	237063335	rs1050996	G	C	2014.77	.	AC=1;AF=0.500;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	0/1:237,114:0.32:351
chr1	237433625	rs2275287	C	T	1689.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:177,95:0.35:272
chr1	237527524	.	G	GT	558.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.685;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.99;ReadPosRankSum=-0.430;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:12,31:0.72:43
chr1	237532763	rs17681893	T	G	1348.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:31,56:0.64:87
chr1	237551241	rs71561868	G	GTC	138.73	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:8,5:0.38:13
chr1	237551376	rs10754602	T	A	254.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.034;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=3.659;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.90;ReadPosRankSum=-0.847;SOR=0.339;set=HC	GT:AD:AF:DP	0/1:69,19:0.22:88
chr1	237580606	rs6673182	G	T	1737.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.38;SOR=6.091;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr1	237580612	rs6673187	G	C	1612.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.43;SOR=7.112;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	237617757	rs3765097	C	T	7706.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr1	237619875	rs5781961	A	AT	2250.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.374;ClippingRankSum=0.000;DB;DP=228;ExcessHet=3.0103;FS=0.582;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.37;ReadPosRankSum=0.321;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:72,145:0.67:217
chr1	237620049	rs2045955	T	C	6422.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr1	237632285	rs35662567	A	AT	2587.73	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr1	237632595	rs71561877	T	TGTG	412.74	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	237655173	rs72549414	A	T	610.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:19,28:0.60:47
chr1	237656185	.	A	AAGGG	582.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.053;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.531;QD=18.80;ReadPosRankSum=-0.890;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:16,15:0.48:31
chr1	237670140	rs2618702	A	G	6220.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr1	237675163	rs67622164	G	A	394.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:37,18:0.33:55
chr1	237693610	rs34521733	C	CA	452.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.649;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=5.503;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.483;QD=3.35;ReadPosRankSum=-1.159;SOR=1.298;set=HC	GT:AD:AF:DP	0/1:84,51:0.38:135
chr1	237693921	rs2779365	A	G	1249.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	237711644	rs2618661	T	C	848.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	237711797	rs2253273	A	G	4685.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:2,181:0.99:183
chr1	237714103	rs2306238	G	A	490.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:13,21:0.62:34
chr1	237730124	rs2805390	A	G	1646.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr1	237730169	rs2779401	C	T	683.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	237732395	rs2805396	G	A	509.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:14,20:0.59:34
chr1	237753074	rs11331089	AT	A	2266.73	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:68,137:0.67:205
chr1	237754340	rs1332777	A	G	1398.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:31,57:0.65:88
chr1	237755188	rs2618713	C	T	4605.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:94,200:0.68:294
chr1	237755203	rs2779430	T	C	3640.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:70,148:0.68:218
chr1	237757027	rs1478915	G	A	797.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:13,32:0.71:45
chr1	237765200	rs2805418	G	A	341.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:7,14:0.67:21
chr1	237765470	rs791541	A	T	732.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:7,32:0.82:39
chr1	237794603	rs1759123	A	G	1647.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:29,63:0.68:92
chr1	237801770	rs707189	T	C	5429.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr1	237802559	rs530109	T	C	2272.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.06;SOR=0.954;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr1	237824332	rs471647	G	A	1548.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	237831103	rs477245	C	A	392.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	237841390	rs34967813	A	G	1409.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:35,68:0.66:103
chr1	237850666	rs10679267	C	CT	615.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.272;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=0.000;QD=7.08;ReadPosRankSum=-0.217;SOR=0.887;set=HC	GT:AD:AF:DP	0/1:30,57:0.66:87
chr1	237862164	rs1521745	G	C	1404.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	237862436	rs1521744	T	C	726.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	237863439	rs12754190	G	A	1989.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr1	237863718	rs2797436	T	G	5874.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr1	237863790	.	G	GT	602.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.940;ClippingRankSum=0.000;DP=131;ExcessHet=3.0103;FS=2.997;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=1.943;QD=5.91;ReadPosRankSum=-2.279;SOR=1.048;set=HC	GT:AD:AF:DP	0/1:56,46:0.45:102
chr1	237865203	rs939699	C	T	1729.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr1	237872714	rs35261418	GT	G	1693	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.222;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.17;MQRankSum=0.553;QD=13.65;ReadPosRankSum=-1.425;SOR=0.701;set=HC	GT:AD:AF:DP	1/1:17,107:0.86:124
chr1	237881770	rs2797441	C	T	2497.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:2,97:0.98:99
chr1	237890437	rs2685301	C	T	9355.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	1/1:0,354:1.00:354
chr1	237893674	rs2797445	C	T	5931.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr1	237905568	rs35446101	T	TC	233.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.016;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.58;ReadPosRankSum=-0.588;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:4,11:0.73:15
chr1	237923053	rs2253831	C	T	1831.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:176,105:0.37:281
chr1	237924112	rs2056387	C	A	148.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.774;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.92;ReadPosRankSum=0.069;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:10,5:0.33:15
chr1	237924114	rs6143694	C	CAATGAATGGAGACATGT	181.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.329;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.36;ReadPosRankSum=0.375;SOR=0.188;set=HC	GT:AD:AF:DP	0/1:11,5:0.31:16
chr1	237951451	rs2256242	A	G	3921.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr1	237951482	rs16835818	G	A	1402.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:20,54:0.73:74
chr1	237955649	rs68129840	CTGTG	C,CTG	351.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=31.98;SOR=2.494;set=HC	GT:AD:AF:DP	1/2:0,4,7:0.36,0.64:11
chr1	237955678	rs144369382	T	C	241.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.098;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=17.27;ReadPosRankSum=0.185;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:7,7:0.50:14
chr1	237955680	rs146659498	T	C	244.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.558;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=17.48;ReadPosRankSum=0.809;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:7,7:0.50:14
chr1	237955698	rs71162418	CGT	C	61.75	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.82;ReadPosRankSum=1.834;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr1	237957146	rs790902	G	A	786.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:41,38:0.48:79
chr1	237957161	rs790901	A	G	832.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.015;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.94;ReadPosRankSum=2.580;SOR=0.759;set=HC	GT:AD:AF:DP	0/1:76,44:0.37:120
chr1	237957309	rs790900	A	C	1779.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:131,93:0.42:224
chr1	237965035	rs2790346	C	A	703.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.670;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=2.308;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.80;ReadPosRankSum=-0.156;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:58,22:0.28:80
chr1	237965043	rs2790347	A	G	700.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.691;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=2.313;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.87;ReadPosRankSum=0.591;SOR=0.407;set=HC	GT:AD:AF:DP	0/1:66,23:0.26:89
chr1	237965094	rs2794820	G	T	727.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.208;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=3.928;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.00;ReadPosRankSum=-0.194;SOR=0.439;set=HC	GT:AD:AF:DP	0/1:131,51:0.28:182
chr1	237965131	rs9428384	G	A	1319.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.197;ClippingRankSum=0.000;DB;DP=247;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.41;ReadPosRankSum=-0.725;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:172,72:0.30:244
chr1	237965133	rs35563566	A	AT	819.73	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:162,73:0.31:235
chr1	237969638	rs790879	A	G	1380.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:147,80:0.35:227
chr1	237993724	rs2275692	C	T	1114.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:21,43:0.67:64
chr1	238048325	rs2298100	A	G	889.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	238051933	rs2236595	C	T	228.98	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:2,10:0.83:12
chr1	240255203	rs12727981	G	T	967.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	240255568	rs140531536	GGGC	G	3357.73	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:1,80:0.99:81
chr1	240256822	rs10926124	C	A	10213.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:1,342:1.00:343
chr1	240286773	rs3820506	C	G	58.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.416;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.35;ReadPosRankSum=-1.887;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:20,5:0.20:25
chr1	240341119	rs3765590	A	G	140.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:20,7:0.26:27
chr1	240341164	rs3765589	C	T	285.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:48,16:0.25:64
chr1	240341268	rs3765588	A	G	1437.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:190,88:0.32:278
chr1	240341423	rs55930966	G	T	730.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:57,35:0.38:92
chr1	240343621	rs7519493	A	G	46.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:17,4:0.19:21
chr1	240351628	rs4659948	T	C	9448.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	1/1:0,349:1.00:349
chr1	240370629	rs10926166	C	G	5894.77	.	AC=1;AF=0.500;AN=2;DB;DP=1012;set=Intersection	GT:AD:AF:DP	0/1:658,336:0.34:994
chr1	240408789	rs1456659	G	A	1463.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:29,66:0.69:95
chr1	240421383	rs10926181	G	A	724.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:20,29:0.59:49
chr1	240448434	rs6673167	G	T	1157.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.388;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.86;ReadPosRankSum=0.550;SOR=0.769;set=HC	GT:AD:AF:DP	0/1:19,54:0.74:73
chr1	240492543	rs6686353	G	A	2623.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:43,105:0.71:148
chr1	240492734	rs3795677	G	A	6930.77	.	AC=1;AF=0.500;AN=2;DB;DP=494;set=Intersection	GT:AD:AF:DP	0/1:164,325:0.66:489
chr1	240497265	rs10157874	A	C	2340.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:45,98:0.69:143
chr1	240601269	rs2356386	A	G	3487.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr1	240635491	rs2210861	G	C	502.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	240655330	rs9287248	G	A	1335.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	240656797	rs11806449	G	A	8792.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:1,329:1.00:330
chr1	240656840	.	TA	T	704	.	AC=2;AF=1.00;AN=2;BRF=0.51;FR=1.0000;HP=1;HapScore=1;MGOF=24;MMLQ=23;MQ=60.0;NF=6;NR=55;PP=704;QD=12.0327868852;SC=CAATCTTACTTATTTTTTTTT;SbPval=0.37;Source=Platypus;TC=99;TCF=8;TCR=91;TR=61;WE=240656860;WS=240656830;set=Platypus	GT:AD:AF:DP	1/1:38,61:0.62:99
chr1	240656841	rs45519645	A	T	4476.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.037;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=29.85;ReadPosRankSum=0.054;SOR=0.971;set=HC	GT:AD:AF:DP	1/1:3,147:0.98:150
chr1	240656852	rs75027152	T	A,TA	5758.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=39.18;SOR=1.570;set=HC	GT:AD:AF:DP	1/2:0,33,114:0.22,0.78:147
chr1	240975213	rs2275742	T	C	9321.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	1/1:0,328:1.00:328
chr1	240975435	rs2275744	C	T	3567.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:1,123:0.99:124
chr1	240977964	rs12744536	G	T	921.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	240979803	rs3738068	G	A	1087.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	241100122	rs261857	G	T	705.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	241146322	rs7520707	A	G	1808.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr1	241519098	rs4659599	T	A	3516.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr1	241667233	rs4660099	C	T	1709.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:58,72:0.55:130
chr1	241667244	rs4659607	G	T	2119.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:69,87:0.56:156
chr1	241675119	rs6673988	G	C	912.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:23,35:0.60:58
chr1	241676758	rs10926500	C	T	1601.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:33,65:0.66:98
chr1	241728198	rs12139441	A	G	1076.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:35,50:0.59:85
chr1	241729687	rs140702304	AAGCTCCCTGGTCAC	A	1274.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.279;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=6.316;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.696;QD=8.33;ReadPosRankSum=1.350;SOR=1.307;set=HC	GT:AD:AF:DP	0/1:113,40:0.26:153
chr1	241729889	rs142152979	G	A	2458.77	.	AC=1;AF=0.500;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	0/1:263,135:0.34:398
chr1	241755348	rs1053230	C	T	1124.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.164;ClippingRankSum=0.000;DB;DP=268;ExcessHet=3.0103;FS=3.941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.33;ReadPosRankSum=0.273;SOR=0.530;set=HC	GT:AD:AF:DP	0/1:189,71:0.27:260
chr1	241755567	rs1053221	T	C	1472.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:25,54:0.68:79
chr1	241761349	rs45572340	T	C	452.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:39,22:0.36:61
chr1	241767930	rs632966	G	A	2364.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr1	241798631	rs3737604	C	T	4305.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:68,176:0.72:244
chr1	241838065	rs66585415	T	C	242.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:54,16:0.23:70
chr1	241847018	rs10802979	C	T	222.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.562;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.48;ReadPosRankSum=-0.232;SOR=0.601;set=HC	GT:AD:AF:DP	0/1:49,15:0.23:64
chr1	241850713	rs75208052	T	C	1123.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:19,51:0.73:70
chr1	241875241	rs76454190	C	T	783.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.046;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=3.045;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.10;ReadPosRankSum=2.252;SOR=0.963;set=HC	GT:AD:AF:DP	0/1:142,49:0.26:191
chr1	241875326	rs12092919	T	C	675.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:16,31:0.66:47
chr1	241886430	rs12748037	C	G	142.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:18,9:0.33:27
chr1	241886790	rs56403213	T	C	225.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.041;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=3.272;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.52;ReadPosRankSum=-0.177;SOR=0.228;set=HC	GT:AD:AF:DP	0/1:35,15:0.30:50
chr1	241907691	rs7418599	A	G	1211.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:120,69:0.37:189
chr1	241907817	rs10802990	T	C	9269.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:0,356:1.00:356
chr1	241907948	rs6703922	T	C	1235.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:25,48:0.66:73
chr1	241913062	rs11432682	C	CT	304.73	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:44,20:0.31:64
chr1	241920562	rs6663895	C	T	2873.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:66,126:0.66:192
chr1	241929542	rs12095445	G	A	2128.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:39,97:0.71:136
chr1	241933876	rs11809239	A	G	407.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:44,21:0.32:65
chr1	241934825	rs139942709	C	CA	296.73	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:6,17:0.74:23
chr1	241935152	rs114725032	C	T	568.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:11,23:0.68:34
chr1	241936055	rs6429310	A	G	2781.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:57,128:0.69:185
chr1	241943271	rs41308208	C	G	282.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:39,17:0.30:56
chr1	241946766	rs953597	A	C	4197.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr1	241951034	rs6429312	C	T	945.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:17,38:0.69:55
chr1	241951106	rs6429313	A	G	2723.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:53,128:0.71:181
chr1	241951107	rs12021981	A	C	869.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.875;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=3.848;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.73;ReadPosRankSum=-1.235;SOR=1.002;set=HC	GT:AD:AF:DP	0/1:131,53:0.29:184
chr1	241951329	rs12074374	C	T	756.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:12,30:0.71:42
chr1	241954005	rs35435449	TA	T	897.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.338;ClippingRankSum=0.000;DB;DP=321;ExcessHet=3.0103;FS=3.899;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=2.199;QD=3.95;ReadPosRankSum=-0.641;SOR=1.015;set=HC	GT:AD:AF:DP	0/1:117,110:0.48:227
chr1	241964559	rs4658661	C	T	2163.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.956;ClippingRankSum=0.000;DB;DP=428;ExcessHet=3.0103;FS=0.570;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.15;ReadPosRankSum=0.832;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:293,127:0.30:420
chr1	242015820	rs2526704	A	G	386.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:9,16:0.64:25
chr1	242020495	rs2995544	C	T	498.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:9,21:0.70:30
chr1	242030151	rs735943	A	G	4309.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:109,201:0.65:310
chr1	242035673	rs4149969	A	G	1286.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:15,51:0.77:66
chr1	242042545	rs1776148	A	G	3982.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:77,181:0.70:258
chr1	242042690	rs1418760	A	G	1387.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:32,60:0.65:92
chr1	242045275	rs1635498	C	T	5467.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr1	242048514	rs10666416	G	GTAAATAAA,GTAAA	1042.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=26;set=Intersection	GT:AF:DP	1/1:1.00:21
chr1	242048674	rs9350	C	T	2606.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:61,119:0.66:180
chr1	242052685	rs4150020	C	G	671.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:12,29:0.71:41
chr1	242053030	rs4150021	AT	A	1043.73	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:32,46:0.59:78
chr1	242053042	rs851797	A	G	617.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:46,28:0.38:74
chr1	242253024	rs7523793	T	C	76.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.223;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.67;ReadPosRankSum=1.014;SOR=0.156;set=HC	GT:AD:AF:DP	0/1:39,7:0.15:46
chr1	242612420	rs2654871	G	A	490.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:17,20:0.54:37
chr1	242687390	rs2810008	G	A	1423.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:110,79:0.42:189
chr1	243327520	rs1815604	A	T	1250.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.728;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=10.146;MLEAC=2;MLEAF=1.000;MQ=58.35;MQRankSum=5.973;QD=24.05;ReadPosRankSum=4.079;SOR=1.739;set=HC	GT:AD:AF:DP	1/1:4,48:0.92:52
chr1	243328887	rs199575184	G	T	220.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.550;ClippingRankSum=0.000;DB;DP=578;ExcessHet=3.0103;FS=12.955;MLEAC=1;MLEAF=0.500;MQ=49.55;MQRankSum=-5.475;QD=0.38;ReadPosRankSum=-3.897;SOR=2.240;set=HC	GT:AD:AF:DP	0/1:512,62:0.11:574
chr1	243329049	rs3766664	G	A	5083.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.274;ClippingRankSum=0.000;DB;DP=1057;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.73;MQRankSum=-12.353;QD=4.89;ReadPosRankSum=1.520;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:731,308:0.30:1039
chr1	243329075	rs61833876	T	C	3004.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.339;ClippingRankSum=0.000;DB;DP=888;ExcessHet=3.0103;FS=0.617;MLEAC=1;MLEAF=0.500;MQ=54.21;MQRankSum=-10.811;QD=3.42;ReadPosRankSum=0.902;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:673,205:0.23:878
chr1	243332884	rs140816120	AAG	A	1566.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.417;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=3.310;MLEAC=2;MLEAF=1.000;MQ=48.04;MQRankSum=0.681;QD=34.82;ReadPosRankSum=-1.158;SOR=2.147;set=HC	GT:AD:AF:DP	1/1:2,43:0.96:45
chr1	243336180	rs34603014	C	T	96.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.191;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.16;MQRankSum=-8.124;QD=1.42;ReadPosRankSum=-3.109;SOR=0.570;set=HC	GT:AD:AF:DP	0/1:56,12:0.18:68
chr1	243362331	rs2789172	C	T	5101.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr1	243362562	.	T	C	1593.77	.	AC=1;AF=0.500;AN=2;DP=261;set=Intersection	GT:AD:AF:DP	0/1:168,89:0.35:257
chr1	243388370	rs10926973	A	T	1843.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr1	243433654	rs2275154	A	G	1330.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr1	243493907	rs2275155	A	T	4308.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:4,167:0.98:171
chr1	243507680	rs3215963	C	CA	3518.73	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr1	244601152	rs3127465	C	T	3013.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr1	244624635	rs3006006	G	C	402.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:17,20:0.54:37
chr1	244624887	rs3124058	T	C	258.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:44,19:0.30:63
chr1	244653556	rs3006021	A	T	141.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:11,7:0.39:18
chr1	244715966	rs35587664	G	A	5413.77	.	AC=1;AF=0.500;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	0/1:159,240:0.60:399
chr1	244773784	rs6698173	T	C	2653.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr1	244773803	rs6698180	T	C	2302.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr1	244803205	rs60280231	CTT	C	3903.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.061;ClippingRankSum=0.000;DB;DP=200;ExcessHet=3.0103;FS=3.911;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.10;ReadPosRankSum=1.820;SOR=0.692;set=HC	GT:AD:AF:DP	1/1:34,151:0.82:185
chr1	244849842	rs41307700	C	T	647.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:99,43:0.30:142
chr1	244993308	rs77714147	CT	C	130.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.303;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.38;ReadPosRankSum=-0.738;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:36,19:0.35:55
chr1	245005373	rs10927335	A	G	948.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:27,45:0.62:72
chr1	245005492	rs150123625	T	TG	745.73	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:23,23:0.50:46
chr1	245005713	rs12095737	A	C	406.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:9,17:0.65:26
chr1	245006492	rs199795132	T	TAGAAA	1540.73	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:127,47:0.27:174
chr1	245018456	rs113724064	TAGCA	T	2200.73	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:34,56:0.62:90
chr1	245021132	rs9730334	C	G	1552.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:27,59:0.69:86
chr1	245021291	rs11299108	TA	T	1767.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.043;ClippingRankSum=0.000;DB;DP=221;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.104;QD=8.42;ReadPosRankSum=1.996;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:71,139:0.66:210
chr1	245025692	rs12124462	A	T	421.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.534;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.10;ReadPosRankSum=1.928;SOR=1.096;set=HC	GT:AD:AF:DP	0/1:19,19:0.50:38
chr1	245027349	rs6675421	C	T	2403.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.249;ClippingRankSum=0.000;DB;DP=677;ExcessHet=3.0103;FS=2.046;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.64;ReadPosRankSum=2.486;SOR=0.868;set=HC	GT:AD:AF:DP	0/1:495,165:0.25:660
chr1	245133489	rs7545078	T	G	3047.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr1	245133539	rs7542813	A	G	4855.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr1	245133549	rs10536649	GGC	G	4726.73	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr1	245133623	rs145835471	T	TCCTCC	4245.73	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:2,178:0.99:180
chr1	245133662	rs61844237	G	C	1571.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:168,90:0.35:258
chr1	245179011	.	CAA	C,CA	2574.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.840;ClippingRankSum=0.000;DP=269;ExcessHet=3.0103;FS=5.876;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.12;MQRankSum=0.786;QD=10.86;ReadPosRankSum=1.246;SOR=1.229;set=HC	GT:AD:AF:DP	1/2:40,72,125:0.30,0.53:237
chr1	245179171	rs1196365	C	T	11606.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr1	245179188	rs1196366	G	T	9608.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr1	245222634	rs694793	C	G	1589.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr1	245222839	rs579269	G	T	3819.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr1	245318688	rs12409851	C	T	2344.77	.	AC=1;AF=0.500;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	0/1:264,130:0.33:394
chr1	245674484	.	AT	A	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.006;ClippingRankSum=0.000;DP=76;ExcessHet=3.0103;FS=6.965;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.66;ReadPosRankSum=1.005;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:50,13:0.21:63
chr1	245703990	rs9919234	G	T	2387.77	.	AC=1;AF=0.500;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	0/1:253,127:0.33:380
chr1	245704130	rs61754898	G	C	7356.77	.	AC=1;AF=0.500;AN=2;DB;DP=505;set=Intersection	GT:AD:AF:DP	0/1:164,331:0.67:495
chr1	245772529	rs7555351	A	G	1924.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:45,84:0.65:129
chr1	245775356	rs56802914	TTGTGTGTGTGTG	T	328.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.401;ClippingRankSum=-0.000;DB;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=-0.842;QD=13.15;ReadPosRankSum=0.065;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:9,16:0.64:25
chr1	245775401	.	TGTGTGTGA	T	586	.	AC=1;AF=0.500;AN=2;BRF=0.33;FR=0.5000;HP=2;HapScore=2;MGOF=60;MMLQ=28;MQ=58.58;NF=4;NR=36;PP=586;QD=14.725;SC=TGTGTGTGTGTGTGTGTGAGA;SbPval=0.61;Source=Platypus;TC=56;TCF=6;TCR=50;TR=40;WE=245775418;WS=245775381;set=Platypus	GT:AD:AF:DP	1/0:16,40:0.71:56
chr1	245775407	rs28368385	T	A	241.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.323;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=-0.804;QD=9.67;ReadPosRankSum=1.998;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:11,14:0.56:25
chr1	245847715	rs149909437	TG	T	2142.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.033;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=15.361;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=0.825;QD=19.48;ReadPosRankSum=0.233;SOR=0.466;set=HC	GT:AD:AF:DP	0/1:27,83:0.75:110
chr1	245849729	rs3820246	G	A	5447.77	.	AC=1;AF=0.500;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	0/1:115,226:0.66:341
chr1	245850506	rs3806273	G	C	5397.77	.	AC=1;AF=0.500;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	0/1:131,244:0.65:375
chr1	245851289	rs58427858	G	T	8484.77	.	AC=1;AF=0.500;AN=2;DB;DP=570;set=Intersection	GT:AD:AF:DP	0/1:184,373:0.67:557
chr1	245851304	rs6701084	A	G	20099.77	.	AC=2;AF=1.00;AN=2;DB;DP=533;set=Intersection	GT:AD:AF:DP	1/1:0,524:1.00:524
chr1	245851609	rs150834033	C	G	6276.77	.	AC=1;AF=0.500;AN=2;DB;DP=906;set=Intersection	GT:AD:AF:DP	0/1:561,334:0.37:895
chr1	245861571	rs3205034	C	T	619.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.683;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.90;ReadPosRankSum=0.471;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:119,40:0.25:159
chr1	245913024	rs41267529	C	T	856.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:85,49:0.37:134
chr1	246021941	rs2362587	T	C	879.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.436;ClippingRankSum=0.000;DB;DP=227;ExcessHet=3.0103;FS=1.169;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.93;ReadPosRankSum=0.904;SOR=0.814;set=HC	GT:AD:AF:DP	0/1:163,61:0.27:224
chr1	246022071	rs2185370	C	T	121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.225;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=1.372;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.06;ReadPosRankSum=-1.038;SOR=0.418;set=HC	GT:AD:AF:DP	0/1:47,12:0.20:59
chr1	246027024	rs12123124	A	G	1291.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.554;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.44;ReadPosRankSum=0.983;SOR=0.642;set=HC	GT:AD:AF:DP	0/1:113,40:0.26:153
chr1	246027029	rs61830203	A	T	1302.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.317;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.09;ReadPosRankSum=0.354;SOR=0.742;set=HC	GT:AD:AF:DP	0/1:120,41:0.25:161
chr1	246027034	rs2153404	G	C	5669.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr1	246091457	rs6669768	T	C	4121.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr1	246091515	rs2275318	C	T	2696.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr1	246091531	rs6669866	T	C	2234.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	246093465	rs11295264	GA	G	3574.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.681;ClippingRankSum=0.000;DB;DP=426;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=2.129;QD=9.33;ReadPosRankSum=0.649;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:119,264:0.69:383
chr1	246110573	rs10802300	A	G	9615.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:0,336:1.00:336
chr1	246489706	rs57404221	GA	G	4486.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.545;ClippingRankSum=0.000;DB;DP=281;ExcessHet=3.0103;FS=2.142;MLEAC=2;MLEAF=1.000;MQ=60.12;MQRankSum=0.464;QD=17.53;ReadPosRankSum=-0.549;SOR=0.580;set=HC	GT:AD:AF:DP	1/1:16,240:0.94:256
chr1	246489769	rs367922653	TA	T	101.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.796;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=3.451;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=-0.747;QD=0.84;ReadPosRankSum=1.201;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:92,29:0.24:121
chr1	246490438	rs3737245	T	C	6766.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.41;SOR=1.674;set=HC	GT:AD:AF:DP	1/1:0,149:1.00:149
chr1	246490442	rs3737246	A	G	7319.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.18;SOR=1.468;set=HC	GT:AD:AF:DP	1/1:0,162:1.00:162
chr1	246490452	rs3737247	G	A	7859.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.49;SOR=1.235;set=HC	GT:AD:AF:DP	1/1:0,185:1.00:185
chr1	246498866	rs10159376	A	C	2221.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:1,70:0.99:71
chr1	246670281	rs6671418	G	C	1036.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.02;SOR=1.432;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	246670297	rs201911211	CCCT	C	140.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.429;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=20.337;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.99;ReadPosRankSum=1.246;SOR=1.199;set=HC	GT:AD:AF:DP	0/1:35,12:0.26:47
chr1	246670298	rs150603688	CCT	C	500.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.287;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=9.373;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.65;ReadPosRankSum=0.213;SOR=2.279;set=HC	GT:AD:AF:DP	0/1:22,25:0.53:47
chr1	246670299	rs10603677	CT	C	58.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.406;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=1.565;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.25;ReadPosRankSum=-0.826;SOR=1.119;set=HC	GT:AD:AF:DP	0/1:38,9:0.19:47
chr1	246670333	rs6426303	A	G	4268.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr1	246670481	rs7520453	C	G	11659.77	.	AC=2;AF=1.00;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	1/1:0,434:1.00:434
chr1	246711789	rs3124131	T	A	584.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:35,36:0.51:71
chr1	246711816	rs5782396	GA	G	860.73	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:80,49:0.38:129
chr1	246712033	rs1890160	A	G	1731.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr1	246714426	rs12140400	A	G	283.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:15,13:0.46:28
chr1	246714587	rs10754526	G	A	551.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:85,34:0.29:119
chr1	246714631	rs80342781	TG	AA	700.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.395;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=3.340;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.96;ReadPosRankSum=0.294;SOR=1.207;set=HC	GT:AD:AF:DP	0/1:65,23:0.26:88
chr1	246714636	rs34850511	T	A	675.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.236;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=2.185;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.55;ReadPosRankSum=-0.569;SOR=1.117;set=HC	GT:AD:AF:DP	0/1:58,21:0.27:79
chr1	246714728	rs9426201	G	A	156.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:15,8:0.35:23
chr1	246720174	rs3120710	A	G	420.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	246720798	rs3124071	G	A	6840.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr1	246727558	rs3120713	G	T	1263.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	246754778	rs35302997	G	GA	484.73	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:13,21:0.62:34
chr1	246755124	rs6702823	T	C	5624.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr1	246797710	rs35650980	G	T	417.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:11,16:0.59:27
chr1	246797714	rs11396823	G	GT	263.73	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:14,16:0.53:30
chr1	246797974	rs6680646	T	A	673.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:15,26:0.63:41
chr1	246804824	rs12401692	T	C	282.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:6,11:0.65:17
chr1	246805433	.	TG	T	179	.	AC=1;AF=0.500;AN=2;BRF=0.41;FR=0.5000;HP=2;HapScore=2;MGOF=25;MMLQ=25;MQ=63.51;NF=1;NR=9;PP=179;QD=22.803089987;SC=GCAAAGGATCTGGTTTTTTTT;SbPval=0.52;Source=Platypus;TC=14;TCF=1;TCR=13;TR=10;WE=246805441;WS=246805423;set=Platypus	GT:AD:AF:DP	0/1:4,10:0.71:14
chr1	246887594	rs12754750	G	A	618.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:11,26:0.70:37
chr1	246890158	rs34677128	T	C	2225.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:55,98:0.64:153
chr1	246899123	rs61852479	T	C	1010.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.278;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.38;ReadPosRankSum=-0.330;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:11,44:0.80:55
chr1	246903654	rs3007322	G	C	861.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:49,42:0.46:91
chr1	246929483	rs12144408	A	G	3316.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr1	246930377	rs10924821	C	T	820.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:5,29:0.85:34
chr1	246939443	rs6665017	G	A	555.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:10,23:0.70:33
chr1	246939610	rs3838991	A	ATATT	10846.73	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr1	246939856	rs3795465	G	A	1081.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.782;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=5.550;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.75;ReadPosRankSum=0.950;SOR=0.531;set=HC	GT:AD:AF:DP	0/1:126,62:0.33:188
chr1	246939943	rs6685364	T	C	967.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.287;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.09;ReadPosRankSum=-1.610;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:130,60:0.32:190
chr1	246940179	rs3795464	G	A	1108.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.872;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=0.594;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.45;ReadPosRankSum=-0.376;SOR=0.783;set=HC	GT:AD:AF:DP	0/1:111,61:0.35:172
chr1	246940182	rs3795463	C	A	5812.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.84;SOR=0.956;set=HC	GT:AD:AF:DP	1/1:0,177:1.00:177
chr1	246940442	rs3795462	T	C	1990.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr1	247006160	rs5021094	G	T	1229.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:15,59:0.80:74
chr1	247019277	rs74152748	T	C	1728.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:43,80:0.65:123
chr1	247021085	rs41308162	G	C	1162.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.584;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=2.860;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.78;ReadPosRankSum=-0.760;SOR=1.047;set=HC	GT:AD:AF:DP	0/1:34,57:0.63:91
chr1	247021266	rs111386980	C	CTTCT	372.73	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:2,12:0.86:14
chr1	247024691	rs41304040	T	C	57.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:4,3:0.43:7
chr1	247027204	rs12134528	C	T	4174.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:75,185:0.71:260
chr1	247031193	.	AC	A	62.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.549;ClippingRankSum=-0.000;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.27;ReadPosRankSum=-0.952;SOR=0.250;set=HC	GT:AD:AF:DP	0/1:5,5:0.50:10
chr1	247031203	rs368941568	C	A	113.82	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.960;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=3.233;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.38;ReadPosRankSum=-0.769;SOR=0.093;set=HC	GT:AD:AF:DP	0/1:3,7:0.70:10
chr1	247031237	.	C	G	270	.	AC=1;AF=0.500;AN=2;BRF=0.38;FR=0.5000;HP=1;HapScore=2;MGOF=56;MMLQ=24;MQ=59.48;NF=0;NR=14;PP=270;QD=21.7693723248;SC=CGTGGTAATACTAGCTAAAAA;SbPval=1.0;Source=Platypus;TC=23;TCF=1;TCR=22;TR=14;WE=247031245;WS=247031227;set=Platypus	GT:AD:AF:DP	0/1:9,14:0.61:23
chr1	247058182	.	G	A	92.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.138;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=1.774;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.65;ReadPosRankSum=1.284;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:26,9:0.26:35
chr1	247067139	rs34620854	CA	C	89.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.542;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=1.273;QD=2.80;ReadPosRankSum=-0.538;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:19,13:0.41:32
chr1	247150740	rs3749427	T	C	4442.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:102,188:0.65:290
chr1	247151035	rs2642993	T	G	1608.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:159,84:0.35:243
chr1	247151557	rs2642992	A	G	4090.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:73,157:0.68:230
chr1	247162581	rs12119510	G	A	2702.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.078;ClippingRankSum=0.000;DB;DP=620;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.38;ReadPosRankSum=-3.423;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:444,173:0.28:617
chr1	247162611	rs3749428	C	G	7026.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.699;ClippingRankSum=0.000;DB;DP=756;ExcessHet=3.0103;FS=1.247;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.31;ReadPosRankSum=2.167;SOR=0.822;set=HC	GT:AD:AF:DP	0/1:549,206:0.27:755
chr1	247162612	rs3749429	A	G	7011.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.129;ClippingRankSum=0.000;DB;DP=759;ExcessHet=3.0103;FS=1.251;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.25;ReadPosRankSum=2.430;SOR=0.827;set=HC	GT:AD:AF:DP	0/1:552,206:0.27:758
chr1	247162613	rs3833603	AC	A	7003.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.957;ClippingRankSum=0.000;DB;DP=773;ExcessHet=3.0103;FS=1.252;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=3.280;QD=9.07;ReadPosRankSum=2.303;SOR=0.797;set=HC	GT:AD:AF:DP	0/1:562,210:0.27:772
chr1	247162628	rs4384270	C	T	3576.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.382;ClippingRankSum=0.000;DB;DP=800;ExcessHet=3.0103;FS=0.583;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=3.202;QD=4.48;ReadPosRankSum=2.774;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:574,225:0.28:799
chr1	247162658	rs2642973	C	T	11985.77	.	AC=1;AF=0.500;AN=2;DB;DP=741;set=Intersection	GT:AD:AF:DP	0/1:209,530:0.72:739
chr1	247241850	rs41305955	G	C	2486.77	.	AC=1;AF=0.500;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	0/1:254,134:0.35:388
chr1	247242032	rs3806269	C	T	1367.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:121,70:0.37:191
chr1	247267274	rs4925692	C	A	591.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:49,32:0.40:81
chr1	247287256	rs12058911	T	A	1597.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.597;ClippingRankSum=0.000;DB;DP=311;ExcessHet=3.0103;FS=3.411;MLEAC=1;MLEAF=0.500;MQ=57.50;MQRankSum=-1.367;QD=5.36;ReadPosRankSum=-3.395;SOR=0.924;set=HC	GT:AD:AF:DP	0/1:202,96:0.32:298
chr1	247287260	rs3901383	A	G	2389.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.836;ClippingRankSum=0.000;DB;DP=304;ExcessHet=3.0103;FS=2.576;MLEAC=1;MLEAF=0.500;MQ=57.91;MQRankSum=-0.373;QD=8.21;ReadPosRankSum=2.523;SOR=0.556;set=HC	GT:AD:AF:DP	0/1:168,123:0.42:291
chr1	247287269	rs78802037	T	C	6602.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.424;ClippingRankSum=0.000;DB;DP=281;ExcessHet=3.0103;FS=0.512;MLEAC=1;MLEAF=0.500;MQ=59.06;MQRankSum=-1.681;QD=24.64;ReadPosRankSum=-2.020;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:70,198:0.74:268
chr1	247322298	rs6675536	G	T	2474.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:63,113:0.64:176
chr1	247323260	rs9793102	C	A	1688.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:23,68:0.75:91
chr1	247323281	.	CTTTTT	C	369.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.040;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=21.412;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.49;ReadPosRankSum=2.144;SOR=5.281;set=HC	GT:AD:AF:DP	0/1:7,13:0.65:20
chr1	247337159	rs10924931	A	G	5651.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:61,240:0.80:301
chr1	247365295	.	C	T	3811.77	.	AC=1;AF=0.500;AN=2;DP=245;set=Intersection	GT:AD:AF:DP	0/1:83,160:0.66:243
chr1	247365430	rs10754539	A	G	1745.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.638;ClippingRankSum=0.000;DB;DP=348;ExcessHet=3.0103;FS=1.973;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.07;ReadPosRankSum=0.123;SOR=0.571;set=HC	GT:AD:AF:DP	0/1:244,100:0.29:344
chr1	247419509	rs1778540	T	C	10584.77	.	AC=2;AF=1.00;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	1/1:0,389:1.00:389
chr1	247419664	rs1778541	C	T	15218.77	.	AC=2;AF=1.00;AN=2;DB;DP=556;set=Intersection	GT:AD:AF:DP	1/1:0,550:1.00:550
chr1	247420421	rs41308154	C	T	414.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:21,19:0.47:40
chr1	247485932	rs10924984	A	G	1965.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr1	247486421	rs6692645	G	C	115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.351;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=1.387;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.41;ReadPosRankSum=0.484;SOR=0.450;set=HC	GT:AD:AF:DP	0/1:38,10:0.21:48
chr1	247486678	rs7540329	T	C	512.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:17,24:0.59:41
chr1	247486736	rs6426239	C	T	111.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:13,6:0.32:19
chr1	247582466	.	A	ATATTT	306.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.249;ClippingRankSum=0.000;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.12;MQRankSum=1.765;QD=6.53;ReadPosRankSum=0.132;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:32,15:0.32:47
chr1	247587477	rs3806268	G	A	6651.77	.	AC=1;AF=0.500;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	0/1:138,288:0.68:426
chr1	247587531	rs4925543	A	G	14285.77	.	AC=2;AF=1.00;AN=2;DB;DP=508;MQ=60.02;set=Intersection	GT:AD:AF:DP	1/1:0,504:1.00:504
chr1	247588053	rs34298354	C	T	9334.77	.	AC=1;AF=0.500;AN=2;DB;DP=657;set=Intersection	GT:AD:AF:DP	0/1:240,413:0.63:653
chr1	247597329	rs12124866	C	T	1421.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	247597364	.	G	GAT	590.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.712;ClippingRankSum=0.000;DP=74;ExcessHet=3.0103;FS=4.907;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=-1.944;QD=13.13;ReadPosRankSum=-2.936;SOR=1.808;set=HC	GT:AD:AF:DP	0/1:36,9:0.20:45
chr1	247597365	rs10925022	G	A,GTGTTCTGAGGCCTTCTCTATTCCAGAGCTCTCTGGTCAGA	3004.73	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;DB;DP=77;set=Intersection	GT:AF:DP	1/2:0.80,0.20:45
chr1	247597656	rs3835304	TG	T	3405.73	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:62,118:0.66:180
chr1	247611570	.	CTT	C	144.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.675;ClippingRankSum=0.000;DP=39;ExcessHet=3.0103;FS=1.661;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.82;ReadPosRankSum=0.308;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:20,10:0.33:30
chr1	247614617	rs4925663	C	T	8813.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:0,319:1.00:319
chr1	247614693	rs6695302	C	T	10876.77	.	AC=2;AF=1.00;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	1/1:0,403:1.00:403
chr1	247614896	rs11583410	A	C	1820.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.044;ClippingRankSum=0.000;DB;DP=391;ExcessHet=3.0103;FS=5.356;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.69;ReadPosRankSum=-0.630;SOR=0.997;set=HC	GT:AD:AF:DP	0/1:290,98:0.25:388
chr1	247615261	rs35305980	GA	G	3253.73	.	AC=1;AF=0.500;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	0/1:243,118:0.33:361
chr1	247695612	rs6657127	G	A	8959.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr1	247695756	rs6697472	T	C	5690.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr1	247712303	rs41315846	T	C	471.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.438;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.66;ReadPosRankSum=0.335;SOR=1.519;set=HC	GT:AD:AF:DP	0/1:6,18:0.75:24
chr1	247726822	rs142922665	CTTTT	C	6606.73	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:91,165:0.64:256
chr1	247729391	rs12141535	G	T	133.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=4.771;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=22.29;ReadPosRankSum=-0.431;SOR=3.258;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chr1	247729400	rs12141536	G	T	133.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=4.771;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=22.29;ReadPosRankSum=-0.431;SOR=3.258;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chr1	247752019	rs1151687	G	C	5768.77	.	AC=1;AF=0.500;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	0/1:110,237:0.68:347
chr1	247752367	rs869111	A	G	8675.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:1,324:1.00:325
chr1	247752660	.	T	G	1228.73	.	AC=1;AF=0.500;AN=2;DP=92;set=Intersection	GT:AD:AF:DP	0/1:30,53:0.64:83
chr1	247769217	rs61750030	T	G	3490.77	.	AC=1;AF=0.500;AN=2;DB;DP=642;set=Intersection	GT:AD:AF:DP	0/1:438,195:0.31:633
chr1	247769752	rs61730407	A	G	4651.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr1	247835352	rs1151641	C	T	1639.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr1	247835674	rs28446289	G	A	1475.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.794;ClippingRankSum=0.000;DB;DP=309;ExcessHet=3.0103;FS=0.971;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.84;ReadPosRankSum=0.908;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:220,85:0.28:305
chr1	247835908	rs28556931	T	A	1134.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:119,59:0.33:178
chr1	247835950	rs1151640	T	C	2607.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:52,105:0.67:157
chr1	247836008	rs28555391	G	A	966.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:134,52:0.28:186
chr1	247836207	rs28711149	T	A	2973.77	.	AC=1;AF=0.500;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	0/1:271,157:0.37:428
chr1	247886949	rs36075193	T	C	1536.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.111;ClippingRankSum=0.000;DB;DP=283;ExcessHet=3.0103;FS=1.597;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.57;ReadPosRankSum=0.456;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:195,81:0.29:276
chr1	247887122	rs56268113	G	A	2091.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.749;ClippingRankSum=0.000;DB;DP=400;ExcessHet=3.0103;FS=2.370;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.32;ReadPosRankSum=-0.639;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:278,115:0.29:393
chr1	247921100	rs1552812	T	G	6431.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr1	247921352	rs1552813	C	T	6350.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr1	247921717	rs10888359	C	A	1999.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr1	247921789	.	AGT	A	152	.	AC=1;AF=0.500;AN=2;BRF=0.17;FR=0.5000;HP=1;HapScore=3;MGOF=38;MMLQ=24;MQ=60.0;NF=1;NR=6;PP=152;QD=22.1428571429;SC=AGAGAGAGACAGTGTGTGTGT;SbPval=0.28;Source=Platypus;TC=22;TCF=1;TCR=21;TR=7;WE=247921798;WS=247921779;set=Platypus	GT:AD:AF:DP	1/0:15,7:0.32:22
chr1	247978079	rs72777548	T	A	792.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.491;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=3.628;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.61;ReadPosRankSum=-2.214;SOR=0.431;set=HC	GT:AD:AF:DP	0/1:76,44:0.37:120
chr1	247978087	rs10888248	G	A	2060.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:47,89:0.65:136
chr1	247978319	rs6695283	A	G	6281.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr1	247978541	rs35979231	AAGG	A	8861.73	.	AC=1;AF=0.500;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	0/1:140,226:0.62:366
chr1	247978996	rs10888249	A	G	2303.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:68,99:0.59:167
chr1	248004296	rs6681483	A	G	567.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.374;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=0.733;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.81;ReadPosRankSum=-1.358;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:113,36:0.24:149
chr1	248004614	rs6667389	G	A	5196.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:127,227:0.64:354
chr1	248004687	rs10888255	C	G	7967.77	.	AC=1;AF=0.500;AN=2;DB;DP=509;set=Intersection	GT:AD:AF:DP	0/1:157,348:0.69:505
chr1	248004775	rs10888256	C	T	7543.77	.	AC=1;AF=0.500;AN=2;DB;DP=505;set=Intersection	GT:AD:AF:DP	0/1:163,338:0.67:501
chr1	248004848	rs4607924	G	C	5133.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:105,208:0.66:313
chr1	248004877	rs10888257	C	T	6764.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.489;ClippingRankSum=0.000;DB;DP=272;ExcessHet=3.0103;FS=2.130;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.15;ReadPosRankSum=1.365;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:100,169:0.63:269
chr1	248004884	rs1339845	T	C	6775.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.829;ClippingRankSum=0.000;DB;DP=277;ExcessHet=3.0103;FS=2.767;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.82;ReadPosRankSum=1.505;SOR=0.541;set=HC	GT:AD:AF:DP	0/1:101,172:0.63:273
chr1	248005213	rs7522811	G	C	1278.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:18,57:0.76:75
chr1	248020448	rs10749636	G	A	244.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:18,11:0.38:29
chr1	248020526	rs142390236	C	A	567.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:56,30:0.35:86
chr1	248020556	rs11204523	G	C	1028.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:84,55:0.40:139
chr1	248021008	rs12096636	A	G	238.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	248023966	rs3737277	C	T	1478.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:28,66:0.70:94
chr1	248024073	rs3737276	A	C	352.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:7,16:0.70:23
chr1	248039294	rs1339847	G	A	8162.77	.	AC=1;AF=0.500;AN=2;DB;DP=541;set=Intersection	GT:AD:AF:DP	0/1:168,367:0.69:535
chr1	248039713	rs3811445	A	G	8911.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	1/1:0,333:1.00:333
chr1	248058755	rs1337876	A	G	1157.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	248058797	rs1856248	T	G	2603.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr1	248058845	rs4500353	A	C	5676.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr1	248058879	rs6587387	A	T	9395.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:0,333:1.00:333
chr1	248059423	rs10888267	C	T	6346.77	.	AC=1;AF=0.500;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	0/1:121,276:0.70:397
chr1	248059456	rs12135078	G	A	5598.77	.	AC=1;AF=0.500;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	0/1:113,243:0.68:356
chr1	248059476	rs12139390	A	C	4982.77	.	AC=1;AF=0.500;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	0/1:112,226:0.67:338
chr1	248059703	rs11204545	T	A	7556.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.605;ClippingRankSum=0.000;DB;DP=311;ExcessHet=3.0103;FS=0.915;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.61;ReadPosRankSum=0.236;SOR=0.625;set=HC	GT:AD:AF:DP	0/1:111,196:0.64:307
chr1	248059712	rs11204546	T	C	7301.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.742;ClippingRankSum=0.000;DB;DP=289;ExcessHet=3.0103;FS=2.717;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.53;ReadPosRankSum=0.855;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:104,182:0.64:286
chr1	248059856	rs10888268	T	C	852.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:13,33:0.72:46
chr1	248084434	rs11204563	G	A	5648.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr1	248084464	rs11204564	T	C	4430.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.199;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=3.038;MLEAC=2;MLEAF=1.000;MQ=48.90;MQRankSum=0.409;QD=30.56;ReadPosRankSum=0.271;SOR=1.948;set=HC	GT:AD:AF:DP	1/1:2,143:0.99:145
chr1	248084464	.	TGGGACCACC	CGGGACCACC,CGGGACCGCA	2797	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.52;FR=0.5000,0.5000;HP=3;HapScore=1;MGOF=27;MMLQ=24;MQ=42.7;NF=33,4;NR=89,29;PP=2797,1398;QD=20;SC=CCTGATTCACTGGGACCACCG;SbPval=0.58;Source=Platypus;TC=125;TCF=35;TCR=90;TR=122,33;WE=248084481;WS=248084454;set=Platypus	GT:AF:DP	0/1:0.98:125
chr1	248084471	rs149623571	A	G	1274.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.673;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=8.530;MLEAC=1;MLEAF=0.500;MQ=47.73;MQRankSum=-3.277;QD=9.58;ReadPosRankSum=0.752;SOR=1.508;set=HC	GT:AD:AF:DP	0/1:94,39:0.29:133
chr1	248084473	rs143274587	C	A	1274.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.959;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=13.218;MLEAC=1;MLEAF=0.500;MQ=47.59;MQRankSum=-3.690;QD=9.73;ReadPosRankSum=1.133;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:94,37:0.28:131
chr1	248085108	rs4625315	C	T	1419.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	248085341	rs4925773	T	A	2488.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr1	248112627	rs4925787	T	C	10233.77	.	AC=1;AF=0.500;AN=2;DB;DP=704;set=Intersection	GT:AD:AF:DP	0/1:244,458:0.65:702
chr1	248112745	rs4925788	G	T	12917.77	.	AC=2;AF=1.00;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	1/1:0,443:1.00:443
chr1	248112762	rs4925789	TG	CA	20556.77	.	AC=2;AF=1.00;AN=2;DB;DP=452;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=49.22;QD=45.99;SOR=0.893;set=HC	GT:AD:AF:DP	1/1:0,447:1.00:447
chr1	248112771	rs4925791	C	T	21299.77	.	AC=2;AF=1.00;AN=2;DB;DP=496;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.95;QD=43.12;SOR=0.868;set=HC	GT:AD:AF:DP	1/1:0,494:1.00:494
chr1	248112809	rs4925583	A	G	17993.77	.	AC=2;AF=1.00;AN=2;DB;DP=648;set=Intersection	GT:AD:AF:DP	1/1:2,644:1.00:646
chr1	248112836	rs4925792	A	G	18815.77	.	AC=2;AF=1.00;AN=2;DB;DP=701;set=Intersection	GT:AD:AF:DP	1/1:2,696:1.00:698
chr1	248112915	rs10888280	A	G	3220.77	.	AC=1;AF=0.500;AN=2;DB;DP=585;set=Intersection	GT:AD:AF:DP	0/1:402,182:0.31:584
chr1	248128929	rs6664332	G	A	2870.77	.	AC=1;AF=0.500;AN=2;DB;DP=482;set=Intersection	GT:AD:AF:DP	0/1:322,151:0.32:473
chr1	248129240	rs4478844	G	A	4668.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:78,200:0.72:278
chr1	248224569	rs75239130	G	T	383.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.974;ClippingRankSum=0.000;DB;DP=1070;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.89;MQRankSum=-20.006;QD=0.36;ReadPosRankSum=4.367;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:920,147:0.14:1067
chr1	248224595	rs76336532	C	T	444.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.151;ClippingRankSum=0.000;DB;DP=1093;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.76;MQRankSum=-27.070;QD=0.41;ReadPosRankSum=-7.092;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:947,139:0.13:1086
chr1	248263471	rs45577033	G	A	1667.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:226,99:0.30:325
chr1	248343543	rs9435919	C	T	8281.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:1,283:1.00:284
chr1	248344442	rs4916105	C	T	372.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	248366702	rs4916112	G	A	23422.77	.	AC=2;AF=1.00;AN=2;DB;DP=885;set=Intersection	GT:AD:AF:DP	1/1:0,874:1.00:874
chr1	248367415	rs4916082	C	T	1569.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr1	248402758	rs6666148	C	T	9431.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:0,342:1.00:342
chr1	248457979	rs6667171	C	A	6872.77	.	AC=1;AF=0.500;AN=2;DB;DP=537;set=Intersection	GT:AD:AF:DP	0/1:225,311:0.58:536
chr1	248458676	rs6678138	T	C	1411.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:53,61:0.54:114
chr1	248458689	rs6674940	A	G	1998.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:66,81:0.55:147
chr1	248458717	rs12745228	C	G	2820.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:87,131:0.60:218
chr1	248486895	rs4244184	G	T	2475.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:84,113:0.57:197
chr1	248486913	rs4244185	A	G	2631.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:93,129:0.58:222
chr1	248487638	rs7555310	A	G	5365.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:102,216:0.68:318
chr1	248487768	rs7555424	A	G	6582.77	.	AC=1;AF=0.500;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	0/1:141,285:0.67:426
chr1	248512064	rs28372410	T	G	4283.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:122,179:0.59:301
chr1	248512094	rs28728105	C	T	5510.77	.	AC=1;AF=0.500;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	0/1:129,240:0.65:369
chr1	248512637	rs2039824	C	T	2852.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:70,133:0.66:203
chr1	248512749	rs28377739	G	A	2403.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:62,102:0.62:164
chr1	248512767	rs28545014	G	T	2379.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:58,106:0.65:164
chr1	248513023	rs28607995	G	A	1185.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:19,49:0.72:68
chr1	248513088	rs28481429	G	C	385.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:3,13:0.81:16
chr1	248525638	rs34079073	CA	C	15183.73	.	AC=1;AF=0.500;AN=2;DB;DP=631;set=Intersection	GT:AD:AF:DP	0/1:192,429:0.69:621
chr1	248550976	rs6587467	T	G	7169.77	.	AC=1;AF=0.500;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	0/1:143,307:0.68:450
chr1	248569282	rs28667896	A	G	988.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:23,38:0.62:61
chr1	248569369	rs28599722	A	G	2561.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:59,117:0.66:176
chr1	248570440	rs6695780	G	A	1493.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:24,61:0.72:85
chr1	248604452	rs78822516	A	G	599.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:53,19:0.26:72
chr1	248604465	rs76925977	C	T	627.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.951;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.97;MQRankSum=-3.345;QD=8.60;ReadPosRankSum=0.730;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:53,20:0.27:73
chr1	248604542	rs61834485	C	T	131.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.684;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=6.093;MLEAC=1;MLEAF=0.500;MQ=45.90;MQRankSum=-2.827;QD=2.64;ReadPosRankSum=1.201;SOR=2.165;set=HC	GT:AD:AF:DP	0/1:40,10:0.20:50
chr1	248604559	rs150497047	T	TTC	1916.73	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.26;QD=50.44;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	248604614	rs201226597	A	T	1411.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.333;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=3.968;MLEAC=1;MLEAF=0.500;MQ=44.94;MQRankSum=1.097;QD=9.94;ReadPosRankSum=0.829;SOR=0.581;set=HC	GT:AD:AF:DP	0/1:71,71:0.50:142
chr1	248604694	rs199872993	C	T	453.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.703;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=12.252;MLEAC=1;MLEAF=0.500;MQ=45.05;MQRankSum=-0.410;QD=3.95;ReadPosRankSum=0.367;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:83,32:0.28:115
chr1	248604765	rs144165631	T	A	1201.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.955;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=11.733;MLEAC=1;MLEAF=0.500;MQ=48.01;MQRankSum=-2.895;QD=10.01;ReadPosRankSum=2.561;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:60,60:0.50:120
chr1	248605436	rs71642447	C	G	4292.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.524;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=10.278;MLEAC=1;MLEAF=0.500;MQ=52.28;MQRankSum=-10.716;QD=24.12;ReadPosRankSum=-1.503;SOR=1.403;set=HC	GT:AD:AF:DP	0/1:67,111:0.62:178
chr1	248605442	rs71642448	G	T	4215.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.398;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=11.216;MLEAC=1;MLEAF=0.500;MQ=51.58;MQRankSum=-11.087;QD=25.71;ReadPosRankSum=-1.789;SOR=1.525;set=HC	GT:AD:AF:DP	0/1:62,102:0.62:164
chr1	248616043	.	C	T	48.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.310;ClippingRankSum=0.000;DP=19;ExcessHet=3.0103;FS=2.754;MLEAC=1;MLEAF=0.500;MQ=39.88;MQRankSum=-0.641;QD=2.57;ReadPosRankSum=0.202;SOR=2.133;set=HC	GT:AD:AF:DP	0/1:15,4:0.21:19
chr1	248617111	.	G	A	128.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.876;ClippingRankSum=0.000;DP=328;ExcessHet=3.0103;FS=14.823;MLEAC=1;MLEAF=0.500;MQ=58.53;MQRankSum=-9.432;QD=0.40;ReadPosRankSum=-1.397;SOR=0.907;set=HC	GT:AD:AF:DP	0/1:299,25:0.08:324
chr1	248617119	.	T	C	236.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.641;ClippingRankSum=0.000;DP=303;ExcessHet=3.0103;FS=17.061;MLEAC=1;MLEAF=0.500;MQ=58.47;MQRankSum=-9.857;QD=0.79;ReadPosRankSum=-0.379;SOR=0.828;set=HC	GT:AD:AF:DP	0/1:272,27:0.09:299
chr1	248617123	rs199745092	C	T	338.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.805;ClippingRankSum=0.000;DB;DP=288;ExcessHet=3.0103;FS=17.160;MLEAC=1;MLEAF=0.500;MQ=58.42;MQRankSum=-9.830;QD=1.19;ReadPosRankSum=0.207;SOR=0.825;set=HC	GT:AD:AF:DP	0/1:257,27:0.10:284
chr1	248617133	rs78191942	C	T	534.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.873;ClippingRankSum=0.000;DB;DP=274;ExcessHet=3.0103;FS=23.641;MLEAC=1;MLEAF=0.500;MQ=58.35;MQRankSum=-10.163;QD=1.98;ReadPosRankSum=1.508;SOR=0.863;set=HC	GT:AD:AF:DP	0/1:240,30:0.11:270
chr1	248617142	rs371574584	AG	A	690.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.209;ClippingRankSum=0.000;DB;DP=244;ExcessHet=3.0103;FS=26.502;MLEAC=1;MLEAF=0.500;MQ=58.19;MQRankSum=-9.826;QD=2.88;ReadPosRankSum=2.251;SOR=0.803;set=HC	GT:AD:AF:DP	0/1:208,32:0.13:240
chr1	248617150	.	T	C	783.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.442;ClippingRankSum=0.000;DP=236;ExcessHet=3.0103;FS=22.796;MLEAC=1;MLEAF=0.500;MQ=58.16;MQRankSum=-10.208;QD=3.38;ReadPosRankSum=2.876;SOR=0.557;set=HC	GT:AD:AF:DP	0/1:198,34:0.15:232
chr1	248617153	rs140089153	C	CTG	800.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.364;ClippingRankSum=0.000;DB;DP=225;ExcessHet=3.0103;FS=26.327;MLEAC=1;MLEAF=0.500;MQ=58.09;MQRankSum=-10.143;QD=3.62;ReadPosRankSum=2.793;SOR=0.539;set=HC	GT:AD:AF:DP	0/1:187,34:0.15:221
chr1	248651927	rs201060805	A	G	273.78	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.69;QD=30.42;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	248685253	rs9727474	T	C	8157.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr1	248722722	rs199528787	T	C	960.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.49;QD=30.02;SOR=2.765;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	248737259	rs189248971	C	G	2994.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.14;QD=28.25;SOR=7.112;set=HC	GT:AD:AF:DP	1/1:0,106:1.00:106
chr1	248738133	rs373986839	A	G	549.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.118;ClippingRankSum=0.000;DB;DP=205;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.68;MQRankSum=-13.700;QD=2.75;ReadPosRankSum=-1.471;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:162,38:0.19:200
chr1	248789454	rs1892441	G	C	6661.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:2,244:0.99:246
chr1	248789504	rs1892442	T	C	9627.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:0,361:1.00:361
chr1	248790075	rs1892443	A	G	13952.77	.	AC=2;AF=1.00;AN=2;DB;DP=522;set=Intersection	GT:AD:AF:DP	1/1:0,517:1.00:517
chr1	248801480	.	A	G	514.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.762;ClippingRankSum=0.000;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=40.08;MQRankSum=2.762;QD=39.60;ReadPosRankSum=-1.340;SOR=3.767;set=HC	GT:AD:AF:DP	0/1:1,12:0.92:13
chr1	248801488	.	C	T	766.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.601;ClippingRankSum=0.000;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=41.94;MQRankSum=1.933;QD=40.36;ReadPosRankSum=-1.465;SOR=2.200;set=HC	GT:AD:AF:DP	0/1:1,18:0.95:19
chr1	248801505	.	T	TCA	1471.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.587;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.83;MQRankSum=1.792;QD=44.60;ReadPosRankSum=-1.419;SOR=2.242;set=HC	GT:AD:AF:DP	0/1:1,32:0.97:33
chr1	248801511	.	A	G	1648.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.726;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=48.83;MQRankSum=1.778;QD=43.39;ReadPosRankSum=-1.186;SOR=2.531;set=HC	GT:AD:AF:DP	0/1:1,37:0.97:38
chr1	248801514	.	AC	A	1975.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.725;ClippingRankSum=0.000;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=49.45;MQRankSum=1.771;QD=47.04;ReadPosRankSum=-1.156;SOR=2.737;set=HC	GT:AD:AF:DP	0/1:1,41:0.98:42
chr1	248801528	.	G	A	2781.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.124;ClippingRankSum=0.000;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.64;MQRankSum=1.766;QD=45.60;ReadPosRankSum=-0.512;SOR=1.371;set=HC	GT:AD:AF:DP	0/1:1,60:0.98:61
chr1	248801538	.	G	A	3836.53	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.760;ClippingRankSum=0.000;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.13;MQRankSum=1.795;QD=42.63;ReadPosRankSum=-0.270;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:1,89:0.99:90
chr1	248801542	rs372631772	A	G	4194.78	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.820;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.44;MQRankSum=1.789;QD=42.80;ReadPosRankSum=0.124;SOR=0.843;set=HC	GT:AD:AF:DP	1/1:1,97:0.99:98
chr1	248801550	rs374446105	C	T	4959.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.782;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.06;MQRankSum=1.772;QD=42.76;ReadPosRankSum=0.851;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:1,115:0.99:116
chr1	248801556	rs79649486	C	T	5454.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.734;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.22;MQRankSum=1.771;QD=44.71;ReadPosRankSum=1.506;SOR=0.811;set=HC	GT:AD:AF:DP	1/1:1,121:0.99:122
chr1	248801566	rs74154510	T	G	6316.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.61;QD=45.77;SOR=1.542;set=HC	GT:AD:AF:DP	1/1:0,138:1.00:138
chr1	248801592	rs78622116	C	T	6766.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr1	248801602	.	T	TCA	6892.73	.	AC=2;AF=1.00;AN=2;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.39;QD=45.65;SOR=1.186;set=HC	GT:AD:AF:DP	1/1:0,151:1.00:151
chr1	248801610	rs150878651	G	A	6926.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.14;QD=45.27;SOR=1.036;set=HC	GT:AD:AF:DP	1/1:0,153:1.00:153
chr1	248801611	rs143981271	C	T	6926.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.14;QD=45.27;SOR=1.036;set=HC	GT:AD:AF:DP	1/1:0,153:1.00:153
chr1	248801633	rs74901534	A	G	6439.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.29;QD=44.72;SOR=0.840;set=HC	GT:AD:AF:DP	1/1:0,144:1.00:144
chr1	248801778	rs201643849	A	T	1271.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.08;QD=31.79;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	248801944	rs143010547	TCAGCACG	T	16335.73	.	AC=2;AF=1.00;AN=2;DB;DP=392;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.94;QD=44.27;SOR=1.008;set=HC	GT:AD:AF:DP	1/1:0,369:1.00:369
chr1	248813135	rs4916153	G	A	2144.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr1	248813547	rs201161767	G	C	801.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.05;QD=30.84;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	248813901	rs144600224	A	T	97.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.345;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=14.241;MLEAC=1;MLEAF=0.500;MQ=46.48;MQRankSum=-4.231;QD=2.08;ReadPosRankSum=-1.227;SOR=3.924;set=HC	GT:AD:AF:DP	0/1:39,8:0.17:47
chr1	248813972	rs147604785	G	A	247.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.133;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=17.343;MLEAC=1;MLEAF=0.500;MQ=41.99;MQRankSum=1.562;QD=5.27;ReadPosRankSum=-2.852;SOR=0.024;set=HC	GT:AD:AF:DP	0/1:33,14:0.30:47
chr1	248814052	rs28533004	T	A	2636.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.555;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=4.499;MLEAC=1;MLEAF=0.500;MQ=46.09;MQRankSum=-2.799;QD=11.17;ReadPosRankSum=-1.053;SOR=0.985;set=HC	GT:AD:AF:DP	0/1:109,127:0.54:236
chr1	248814080	rs1782242	A	C	8046.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr1	248814126	rs28418327	G	A	5534.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:76,248:0.77:324
chr1	248845097	rs2000390	C	T	11422.77	.	AC=2;AF=1.00;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	1/1:0,423:1.00:423
chr1	248845411	rs11485825	G	A	6434.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr1	248845458	rs4509608	C	T	6793.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr1	248845471	rs4575113	T	C	6305.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:2,240:0.99:242
chr1	248845499	rs4462184	A	G	7011.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr1	249108640	rs12031808	C	T	558.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:61,32:0.34:93
chr1	249109034	rs10888590	A	G	156.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:31,10:0.24:41
chr1	249120684	rs11205415	T	G	1718.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:203,100:0.33:303
chr1	249120794	rs11205416	G	A	228.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:36,13:0.27:49
chr1	249142362	rs180780216	G	A	9055.77	.	AC=1;AF=0.500;AN=2;DB;DP=574;set=Intersection	GT:AD:AF:DP	0/1:178,393:0.69:571
chr1	249145072	rs11434456	C	CA	1291.73	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:118,46:0.28:164
chr1	249149486	rs12135449	T	C	137.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:23,9:0.28:32
chr1	249208541	rs78367748	C	T	45.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:5,3:0.38:8
chr1	249208615	rs12023135	G	C	240.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:24,12:0.33:36
chr1	249211681	.	A	G	1902.77	.	AC=1;AF=0.500;AN=2;DP=323;set=Intersection	GT:AD:AF:DP	0/1:216,103:0.32:319
chr2	45895	rs4241318	A	G	7348.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr2	224970	rs2290912	C	T	3973.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr2	234130	rs3748872	T	G	14560.77	.	AC=2;AF=1.00;AN=2;DB;DP=536;set=Intersection	GT:AD:AF:DP	1/1:1,530:1.00:531
chr2	242732	rs113405432	T	TAAC	8110.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.339;ClippingRankSum=0.000;DB;DP=203;ExcessHet=3.0103;FS=1.645;MLEAC=2;MLEAF=1.000;MQ=60.69;MQRankSum=0.730;QD=42.02;ReadPosRankSum=-1.031;SOR=1.328;set=HC	GT:AD:AF:DP	1/1:7,186:0.96:193
chr2	242800	rs10181051	T	C	11128.77	.	AC=2;AF=1.00;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	1/1:1,421:1.00:422
chr2	243504	rs7556816	C	T	11661.77	.	AC=2;AF=1.00;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	1/1:2,414:1.00:416
chr2	243567	rs11383620	T	TA	11431.73	.	AC=2;AF=1.00;AN=2;DB;DP=660;set=Intersection	GT:AD:AF:DP	1/1:50,576:0.92:626
chr2	262553	rs7596678	T	C	7871.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr2	264895	rs4854300	G	C	7446.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr2	269352	rs6755722	G	A	8017.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr2	271998	rs34887991	C	CA	3995.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.794;ClippingRankSum=0.000;DB;DP=550;ExcessHet=3.0103;FS=5.074;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=1.674;QD=9.00;ReadPosRankSum=1.018;SOR=0.875;set=HC	GT:AD:AF:DP	0/1:137,307:0.69:444
chr2	272840	rs12714401	G	A	4369.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr2	272926	rs12714402	A	G	13104.77	.	AC=2;AF=1.00;AN=2;DB;DP=514;set=Intersection	GT:AD:AF:DP	1/1:0,509:1.00:509
chr2	273070	rs12714403	A	G	9412.77	.	AC=2;AF=1.00;AN=2;DB;DP=345;MQ=60.03;set=Intersection	GT:AD:AF:DP	1/1:0,337:1.00:337
chr2	283231	rs368562757	A	AT	4062.73	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:1,165:0.99:166
chr2	287448	rs376142253	TAAA	T	2356.73	.	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;QD=28.06;SOR=1.157;set=HC	GT:AD:AF:DP	1/1:5,79:0.94:84
chr2	675831	rs2293084	G	T	1210.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:105,58:0.36:163
chr2	676177	rs2293083	C	G	14950.77	.	AC=2;AF=1.00;AN=2;DB;DP=551;set=Intersection	GT:AD:AF:DP	1/1:0,546:1.00:546
chr2	676457	rs2293082	G	C	13117.77	.	AC=2;AF=1.00;AN=2;DB;DP=743;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr2	676478	rs3215297	T	TGTAA	44888.73	.	AC=2;AF=1.00;AN=2;DB;DP=975;set=Intersection	GT:AD:AF:DP	1/1:0,963:1.00:963
chr2	677213	rs3749138	G	A	4002.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr2	1079130	rs4971429	G	A	12360.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.953;ClippingRankSum=0.000;DB;DP=433;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.75;ReadPosRankSum=-0.053;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:133,297:0.69:430
chr2	1079130	.	GCG	ACA	2944	.	AC=1;AF=0.500;AN=2;BRF=0.44;FR=0.5000;HP=1;HapScore=1;MGOF=1;MMLQ=28;MQ=60.0;NF=152;NR=65;PP=2944;QD=20;SC=TGAGCAGGAGGCGTGCGTCAC;SbPval=0.52;Source=Platypus;TC=328;TCF=229;TCR=99;TR=217;WE=1079151;WS=1079120;set=Platypus	GT:AD:AF:DP	1/0:111,217:0.66:328
chr2	1079132	rs4971430	G	A	12360.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.477;ClippingRankSum=0.000;DB;DP=455;ExcessHet=3.0103;FS=0.587;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.35;ReadPosRankSum=0.080;SOR=0.642;set=HC	GT:AD:AF:DP	0/1:141,311:0.69:452
chr2	1079143	rs4971431	A	G	8782.77	.	AC=1;AF=0.500;AN=2;DB;DP=536;set=Intersection	GT:AD:AF:DP	0/1:161,370:0.70:531
chr2	1079320	rs4971432	C	T	8381.77	.	AC=1;AF=0.500;AN=2;DB;DP=548;set=Intersection	GT:AD:AF:DP	0/1:172,364:0.68:536
chr2	1093965	rs11127460	G	A	2743.77	.	AC=1;AF=0.500;AN=2;DB;DP=566;set=Intersection	GT:AD:AF:DP	0/1:389,167:0.30:556
chr2	1133188	rs5828807	G	GCACA	520.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.540;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=1.419;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.51;ReadPosRankSum=-1.706;SOR=0.990;set=HC	GT:AD:AF:DP	0/1:63,17:0.21:80
chr2	1168756	rs4597564	G	A	1838.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:184,99:0.35:283
chr2	1168781	rs28505970	C	A	3461.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:96,164:0.63:260
chr2	1168982	rs7560649	T	A	80.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:13,5:0.28:18
chr2	1241592	rs146197111	C	T	2463.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr2	1241883	rs35402865	G	A	4006.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:74,164:0.69:238
chr2	1241944	rs28502413	G	C	1677.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:35,64:0.65:99
chr2	1243312	rs28760535	T	C	2716.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.365;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=5.541;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=31.23;ReadPosRankSum=1.322;SOR=0.254;set=HC	GT:AD:AF:DP	0/1:25,62:0.71:87
chr2	1243318	rs28436921	C	T	2720.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.866;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=10.771;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.67;ReadPosRankSum=1.543;SOR=0.154;set=HC	GT:AD:AF:DP	0/1:29,73:0.72:102
chr2	1243608	rs28570180	A	C	3468.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:87,198:0.69:285
chr2	1243645	rs28411047	T	G	1938.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:39,77:0.66:116
chr2	1251087	rs58278307	A	AAAGGTT	6256.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:77,151:0.66:228
chr2	1251088	rs55953201	C	T	6264.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:78,155:0.67:233
chr2	1263005	rs9330340	A	G	1548.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:25,51:0.67:76
chr2	1263356	rs62106570	T	C	1161.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:17,42:0.71:59
chr2	1271230	rs13023962	A	G	2370.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:80,115:0.59:195
chr2	1320143	rs4927635	C	T	7653.77	.	AC=1;AF=0.500;AN=2;DB;DP=586;set=Intersection	GT:AD:AF:DP	0/1:229,352:0.61:581
chr2	1320300	rs35466197	A	G	2076.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.283;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=3.179;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.64;ReadPosRankSum=0.537;SOR=0.280;set=HC	GT:AD:AF:DP	0/1:28,53:0.65:81
chr2	1320304	rs74994128	CG	AC	1986.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.023;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=5.005;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.47;ReadPosRankSum=0.482;SOR=0.248;set=HC	GT:AD:AF:DP	0/1:28,50:0.64:78
chr2	1418192	rs9678281	C	G	4431.77	.	AC=1;AF=0.500;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	0/1:119,196:0.62:315
chr2	1426787	rs2276701	G	A	6508.77	.	AC=1;AF=0.500;AN=2;DB;DP=473;set=Intersection	GT:AD:AF:DP	0/1:170,296:0.64:466
chr2	1437163	rs1473936	A	C	4808.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:119,203:0.63:322
chr2	1437410	rs4927578	C	T	2019.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:199,102:0.34:301
chr2	1440299	rs28909386	A	G	2370.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:39,92:0.70:131
chr2	1442417	rs4425120	C	T	1532.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:28,60:0.68:88
chr2	1442476	rs1969248	T	C	3367.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:64,134:0.68:198
chr2	1442551	rs3036132	ATTTT	A	10577.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.663;ClippingRankSum=0.000;DB;DP=581;ExcessHet=3.0103;FS=4.379;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.683;QD=19.85;ReadPosRankSum=1.650;SOR=0.963;set=HC	GT:AD:AF:DP	0/1:195,338:0.63:533
chr2	1457364	rs2070881	A	G	20666.77	.	AC=2;AF=1.00;AN=2;DB;DP=729;set=Intersection	GT:AD:AF:DP	1/1:0,718:1.00:718
chr2	1459806	rs4927610	A	G	1875.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr2	1460004	rs4927611	G	T	4564.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:101,209:0.67:310
chr2	1460140	rs4927612	A	G	754.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:18,28:0.61:46
chr2	1481155	rs2280132	G	T	1154.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:131,61:0.32:192
chr2	1481231	rs2175977	G	C	1596.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:144,86:0.37:230
chr2	1488668	rs6715129	T	C	2127.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:41,78:0.66:119
chr2	1491497	rs6727192	T	C	2598.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:55,115:0.68:170
chr2	1491510	.	C	CA	179.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.493;ClippingRankSum=0.000;DP=243;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.85;ReadPosRankSum=-0.385;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:168,44:0.21:212
chr2	1546327	rs1042589	C	G	23428.77	.	AC=2;AF=1.00;AN=2;DB;DP=897;set=Intersection	GT:AD:AF:DP	1/1:0,889:1.00:889
chr2	1639122	rs2241457	T	C	852.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:20,33:0.62:53
chr2	1642537	rs6729142	T	C	1577.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.513;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=1.240;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.45;ReadPosRankSum=0.676;SOR=0.514;set=HC	GT:AD:AF:DP	0/1:24,38:0.61:62
chr2	1642539	rs6742040	C	T	1622.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.845;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.36;ReadPosRankSum=0.219;SOR=0.567;set=HC	GT:AD:AF:DP	0/1:24,40:0.62:64
chr2	1642545	rs6742039	C	G	1783.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.821;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.44;ReadPosRankSum=-1.079;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:25,48:0.66:73
chr2	1642803	.	CGGGTCTCATTTCAAGGTTTCCTGGGTGTGCACCGCCCCTGATGCTCTGAGCT	C	341.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.091;ClippingRankSum=0.000;DP=84;ExcessHet=3.0103;FS=1.501;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.22;ReadPosRankSum=-2.034;SOR=0.458;set=HC	GT:AD:AF:DP	0/1:8,73:0.90:81
chr2	1647171	rs6730800	T	C	8008.77	.	AC=1;AF=0.500;AN=2;DB;DP=556;set=Intersection	GT:AD:AF:DP	0/1:185,355:0.66:540
chr2	1652822	rs1863135	T	G	8737.77	.	AC=1;AF=0.500;AN=2;DB;DP=571;set=Intersection	GT:AD:AF:DP	0/1:174,395:0.69:569
chr2	1664654	rs17841813	A	G	5953.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr2	1667267	rs2241455	C	G	5397.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr2	1667310	rs12475392	G	A	9728.77	.	AC=2;AF=1.00;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	1/1:0,362:1.00:362
chr2	1667472	.	C	A	2025.77	.	AC=1;AF=0.500;AN=2;DP=315;set=Intersection	GT:AD:AF:DP	0/1:205,106:0.34:311
chr2	1683994	rs376902965	G	A	2187.77	.	AC=1;AF=0.500;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	0/1:266,123:0.32:389
chr2	1687242	rs71402111	A	ATTGTCTGAGCCACATGTTTTTCATTTTGCTCTCTAATGGATTCAATCCACCCTCCATATATTCTCATTCTTTC	846.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.941;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.52;ReadPosRankSum=-0.549;SOR=0.562;set=HC	GT:AD:AF:DP	0/1:28,8:0.22:36
chr2	1687653	rs13396471	T	G	495.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:54,37:0.41:91
chr2	1696510	rs138859568	AAC	A	15107.73	.	AC=2;AF=1.00;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	1/1:0,373:1.00:373
chr2	1842968	rs6728368	T	C	3836.77	.	AC=1;AF=0.500;AN=2;DB;DP=482;set=Intersection	GT:AD:AF:DP	0/1:282,197:0.41:479
chr2	1843285	rs10196494	A	G	792.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.432;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=7.283;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.01;ReadPosRankSum=-0.373;SOR=0.169;set=HC	GT:AD:AF:DP	0/1:53,35:0.40:88
chr2	1844458	rs4381806	T	C	992.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:94,52:0.36:146
chr2	1844652	rs7425544	C	T	1390.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.085;ClippingRankSum=0.000;DB;DP=254;ExcessHet=3.0103;FS=1.777;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.63;ReadPosRankSum=-2.303;SOR=0.564;set=HC	GT:AD:AF:DP	0/1:180,67:0.27:247
chr2	1844676	rs7425542	C	T	828.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.157;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=6.680;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.671;QD=5.28;ReadPosRankSum=-3.503;SOR=1.519;set=HC	GT:AD:AF:DP	0/1:125,32:0.20:157
chr2	1890173	rs4853824	A	G	171.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:19,10:0.34:29
chr2	1926437	rs1529667	G	T	26195.77	.	AC=2;AF=1.00;AN=2;DB;DP=926;set=Intersection	GT:AD:AF:DP	1/1:0,907:1.00:907
chr2	1946646	rs7355555	A	C	5182.77	.	AC=1;AF=0.500;AN=2;DB;DP=1023;set=Intersection	GT:AD:AF:DP	0/1:699,312:0.31:1011
chr2	1946914	rs3748988	A	G	2675.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.193;ClippingRankSum=0.000;DB;DP=616;ExcessHet=3.0103;FS=0.575;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.42;ReadPosRankSum=-0.101;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:431,175:0.29:606
chr2	1982915	rs3214602	GA	G	3598.73	.	AC=1;AF=0.500;AN=2;DB;DP=903;MQ=60.07;set=Intersection	GT:AD:AF:DP	0/1:569,283:0.33:852
chr2	1983374	rs2304008	A	C	2737.77	.	AC=1;AF=0.500;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	0/1:299,147:0.33:446
chr2	1983619	rs7561518	A	G	1687.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:202,92:0.31:294
chr2	3200948	rs1037467	C	A	1524.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr2	3212247	rs7584823	G	T	6420.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr2	3217777	rs11127386	A	C	1407.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr2	3217794	rs10865535	T	C	2195.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr2	3217908	rs11682452	G	C	11903.77	.	AC=2;AF=1.00;AN=2;DB;DP=466;set=Intersection	GT:AD:AF:DP	1/1:2,461:1.00:463
chr2	3277947	rs2694081	T	A	928.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:74,44:0.37:118
chr2	3322797	rs12618407	C	A	5725.77	.	AC=1;AF=0.500;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	0/1:150,251:0.63:401
chr2	3342009	rs3811617	T	C	530.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:11,23:0.68:34
chr2	3356849	rs4854122	A	G	587.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:60,32:0.35:92
chr2	3356953	rs2875394	A	T	13879.77	.	AC=2;AF=1.00;AN=2;DB;DP=533;set=Intersection	GT:AD:AF:DP	1/1:0,524:1.00:524
chr2	3358295	rs12612251	T	C	5695.77	.	AC=1;AF=0.500;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	0/1:125,258:0.67:383
chr2	3358458	rs146001084	ATTATGAAGTTAGAT	A	13194.73	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr2	3391826	rs11127423	C	T	4263.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:104,187:0.64:291
chr2	3392075	rs10865541	T	C	46009.77	.	AC=2;AF=1.00;AN=2;DB;DP=1649;set=Intersection	GT:AD:AF:DP	1/1:0,1638:1.00:1638
chr2	3392295	rs11686212	A	G	12042.77	.	AC=1;AF=0.500;AN=2;DB;DP=896;set=Intersection	GT:AD:AF:DP	0/1:364,529:0.59:893
chr2	3392513	rs12999423	T	C	39075.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.910;ClippingRankSum=0.000;DB;DP=885;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=44.30;ReadPosRankSum=0.686;SOR=0.768;set=HC	GT:AD:AF:DP	1/1:2,880:1.00:882
chr2	3392513	.	TT	CA	2947	.	AC=2;AF=1.00;AN=2;BRF=0.48;FR=1.0000;HP=2;HapScore=1;MGOF=8;MMLQ=25;MQ=60.0;NF=263;NR=289;PP=2947;QD=20;SC=CAGTGCCCCTTTAGGGATGGA;SbPval=0.5;Source=Platypus;TC=579;TCF=272;TCR=307;TR=552;WE=3392522;WS=3392503;set=Platypus	GT:AD:AF:DP	1/1:27,552:0.95:579
chr2	3392514	rs12999424	T	A	39075.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.692;ClippingRankSum=0.000;DB;DP=884;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=44.35;ReadPosRankSum=0.600;SOR=0.761;set=HC	GT:AD:AF:DP	1/1:2,879:1.00:881
chr2	3392536	.	C	T	5067.77	.	AC=1;AF=0.500;AN=2;DP=835;set=Intersection	GT:AD:AF:DP	0/1:557,275:0.33:832
chr2	3393565	rs71396985	C	CAA	16158.73	.	AC=2;AF=1.00;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	1/1:0,363:1.00:363
chr2	3425514	rs7558487	G	C	12059.77	.	AC=2;AF=1.00;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	1/1:0,433:1.00:433
chr2	3425948	rs10206964	T	C	677.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	3428508	rs10166880	T	G	883.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:89,41:0.32:130
chr2	3460870	rs7579428	T	C	483.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:11,19:0.63:30
chr2	3469278	rs4971513	C	G	1601.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:27,72:0.73:99
chr2	3469463	rs4971514	G	C	3817.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:99,171:0.63:270
chr2	3470115	rs7593516	T	C	21774.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.837;ClippingRankSum=0.000;DB;DP=805;ExcessHet=3.0103;FS=1.180;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.08;ReadPosRankSum=1.319;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:259,545:0.68:804
chr2	3470124	rs7574517	G	A	21920.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.189;ClippingRankSum=0.000;DB;DP=816;ExcessHet=3.0103;FS=0.564;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.90;ReadPosRankSum=0.936;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:260,555:0.68:815
chr2	3470186	rs11691759	G	C	9362.77	.	AC=1;AF=0.500;AN=2;DB;DP=641;set=Intersection	GT:AD:AF:DP	0/1:224,417:0.65:641
chr2	3470254	rs11677515	T	G	4665.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:120,188:0.61:308
chr2	3481531	rs11548215	T	C	1535.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:167,86:0.34:253
chr2	3481637	rs4535074	T	C	3133.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:78,144:0.65:222
chr2	3481659	rs4321399	G	A	2517.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:64,116:0.64:180
chr2	3481716	rs4535075	T	C	1719.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:38,67:0.64:105
chr2	3482796	rs11890651	T	G	5459.77	.	AC=1;AF=0.500;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	0/1:162,243:0.60:405
chr2	3482912	rs13431788	G	A	2822.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:66,105:0.61:171
chr2	3483205	rs6767	C	T	9735.77	.	AC=1;AF=0.500;AN=2;DB;DP=684;set=Intersection	GT:AD:AF:DP	0/1:248,430:0.63:678
chr2	3483390	rs7569694	T	G	879.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:27,33:0.55:60
chr2	3488502	rs9752130	A	G	11585.77	.	AC=1;AF=0.500;AN=2;DB;DP=834;set=Intersection	GT:AD:AF:DP	0/1:290,534:0.65:824
chr2	3502709	rs10208494	A	G	2617.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:48,115:0.71:163
chr2	3502909	rs10627319	A	ACTT	16850.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=654;set=Intersection	GT:AD:AF:DP	0/1:213,422:0.66:635
chr2	3502910	rs58219575	G	T	16859.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=626;MQ=60.14;set=Intersection	GT:AD:AF:DP	0/1:213,410:0.66:623
chr2	3502932	rs10194787	G	A	7279.77	.	AC=1;AF=0.500;AN=2;DB;DP=497;MQ=60.04;set=Intersection	GT:AD:AF:DP	0/1:166,330:0.67:496
chr2	3504290	rs6146601	GTGTACCTGCCGCCGCA	G	3175.73	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:53,81:0.60:134
chr2	3504687	rs9950	A	G	10929.77	.	AC=1;AF=0.500;AN=2;DB;DP=849;set=Intersection	GT:AD:AF:DP	0/1:332,504:0.60:836
chr2	3504819	rs34240449	A	G	5498.77	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:109,230:0.68:339
chr2	3504893	rs35008570	G	GA	1914.73	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:31,78:0.72:109
chr2	3523324	rs10179340	A	G	864.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.594;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=0.584;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.43;ReadPosRankSum=1.103;SOR=0.621;set=HC	GT:AD:AF:DP	0/1:139,56:0.29:195
chr2	3579760	rs1071625	T	C	2286.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.366;ClippingRankSum=0.000;DB;DP=430;ExcessHet=3.0103;FS=0.597;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.38;ReadPosRankSum=2.402;SOR=0.615;set=HC	GT:AD:AF:DP	0/1:298,127:0.30:425
chr2	3595834	rs13002108	C	A	3037.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:61,114:0.65:175
chr2	3597974	rs10186193	T	C	1197.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:82,56:0.41:138
chr2	3600012	rs151141402	CCTCT	C	1837.73	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:91,52:0.36:143
chr2	3605468	rs12711976	A	G	3189.77	.	AC=1;AF=0.500;AN=2;DB;DP=671;set=Intersection	GT:AD:AF:DP	0/1:481,189:0.28:670
chr2	3627648	rs7576238	G	C	8726.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:0,335:1.00:335
chr2	3628383	rs2071639	C	A	107.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:14,6:0.30:20
chr2	3652616	rs3769507	G	C	11015.77	.	AC=2;AF=1.00;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	1/1:0,422:1.00:422
chr2	3653576	rs7604806	A	G	1590.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:31,56:0.64:87
chr2	3653842	rs72767191	C	A	2060.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.687;ClippingRankSum=0.000;DB;DP=319;ExcessHet=3.0103;FS=1.998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.58;ReadPosRankSum=-1.011;SOR=0.839;set=HC	GT:AD:AF:DP	0/1:201,112:0.36:313
chr2	3653842	.	CCT	ACC	798	.	AC=1;AF=0.500;AN=2;BRF=0.45;FR=0.5000;HP=1;HapScore=1;MGOF=5;MMLQ=24;MQ=60.0;NF=24;NR=43;PP=798;QD=12.7084757442;SC=AGGTCAGTAGCCTGCACTGGT;SbPval=0.61;Source=Platypus;TC=211;TCF=79;TCR=132;TR=67;WE=3653852;WS=3653832;set=Platypus	GT:AD:AF:DP	1/0:144,67:0.32:211
chr2	3653844	rs3739147	T	C	10238.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr2	3653888	rs7561319	G	A	1062.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:107,56:0.34:163
chr2	3660752	rs3811531	T	C	2286.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:39,90:0.70:129
chr2	3660869	rs17017752	G	A	2363.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.036;ClippingRankSum=0.000;DB;DP=491;ExcessHet=3.0103;FS=1.202;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.93;ReadPosRankSum=-0.951;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:330,149:0.31:479
chr2	3661002	rs67826307	G	A	999.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.325;ClippingRankSum=0.000;DB;DP=251;ExcessHet=3.0103;FS=0.529;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.11;ReadPosRankSum=0.090;SOR=0.640;set=HC	GT:AD:AF:DP	0/1:176,67:0.28:243
chr2	3685046	rs3811528	T	C	4820.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr2	3685074	rs3811527	A	G	7048.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr2	3718692	rs13409104	C	T	3219.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:91,147:0.62:238
chr2	3721632	rs13390724	G	A	724.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:24,36:0.60:60
chr2	3721729	rs12105179	A	G	2400.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:62,108:0.64:170
chr2	3725964	rs72769388	C	T	2317.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:61,94:0.61:155
chr2	3726163	rs2043080	T	C	3673.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:67,151:0.69:218
chr2	3749084	rs11689171	T	C	10027.77	.	AC=1;AF=0.500;AN=2;DB;DP=682;MQ=60.03;set=Intersection	GT:AD:AF:DP	0/1:223,458:0.67:681
chr2	3749151	rs66473381	GGAA	G	12477.73	.	AC=1;AF=0.500;AN=2;DB;DP=512;set=Intersection	GT:AD:AF:DP	0/1:140,311:0.69:451
chr2	3749267	rs11681270	G	A	1815.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:37,70:0.65:107
chr2	3751606	rs56104311	C	T	1118.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:17,46:0.73:63
chr2	3756073	rs17505481	G	A	1082.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:19,44:0.70:63
chr2	3774436	rs357940	C	T	5419.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr2	3774448	rs12711970	T	C	3278.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:81,139:0.63:220
chr2	3774519	rs357941	T	C	13388.77	.	AC=2;AF=1.00;AN=2;DB;DP=515;set=Intersection	GT:AD:AF:DP	1/1:0,506:1.00:506
chr2	3800383	rs357969	C	T	11236.77	.	AC=1;AF=0.500;AN=2;DB;DP=816;set=Intersection	GT:AD:AF:DP	0/1:301,501:0.62:802
chr2	3800496	rs357968	C	T	7429.77	.	AC=1;AF=0.500;AN=2;DB;DP=556;set=Intersection	GT:AD:AF:DP	0/1:215,334:0.61:549
chr2	3815250	rs10180257	A	G	3764.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:91,154:0.63:245
chr2	3815532	rs11404437	A	AT	709.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.863;ClippingRankSum=0.000;DB;DP=243;ExcessHet=3.0103;FS=6.790;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=0.000;QD=4.06;ReadPosRankSum=2.072;SOR=1.385;set=HC	GT:AD:AF:DP	0/1:112,63:0.36:175
chr2	3826324	rs13005405	C	T	3091.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:94,128:0.58:222
chr2	3826387	rs13021385	T	C	7116.77	.	AC=1;AF=0.500;AN=2;DB;DP=508;set=Intersection	GT:AD:AF:DP	0/1:189,312:0.62:501
chr2	3826597	rs13035992	G	A	5274.77	.	AC=1;AF=0.500;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	0/1:125,226:0.64:351
chr2	4672834	rs71906919	CTG	C	291.73	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:13,12:0.48:25
chr2	7001225	.	ACACACACACG	A	1510	.	AC=2;AF=1.00;AN=2;BRF=0.37;FR=0.5000;HP=1;HapScore=1;MGOF=24;MMLQ=21;MQ=59.92;NF=59;NR=50;PP=1510;QD=14.0458715596;SC=ATGTACGTATACACACACACG;SbPval=0.5;Source=Platypus;TC=152;TCF=84;TCR=68;TR=109;WE=7001245;WS=7001214;set=Platypus	GT:AD:AF:DP	1/1:43,109:0.72:152
chr2	7001233	rs3085147	ACG	A	12117.73	.	AC=2;AF=1.00;AN=2;DB;DP=300;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.53;SOR=1.478;set=HC	GT:AD:AF:DP	1/1:0,299:1.00:299
chr2	7001249	rs202012587	ACACACACACC	A	1616.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.092;ClippingRankSum=0.000;DB;DP=364;ExcessHet=3.0103;FS=4.631;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.59;ReadPosRankSum=2.251;SOR=0.435;set=HC	GT:AD:AF:DP	0/1:142,71:0.33:213
chr2	7001251	.	ACACACACC	A	2522.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.687;ClippingRankSum=0.000;DP=364;ExcessHet=3.0103;FS=5.633;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.55;ReadPosRankSum=0.073;SOR=1.138;set=HC	GT:AD:AF:DP	0/1:99,102:0.51:201
chr2	7001259	.	C	A	2965	.	AC=2;AF=1.00;AN=2;BRF=0.4;FR=1.0000;HP=2;HapScore=1;MGOF=112;MMLQ=24;MQ=60.0;NF=167;NR=95;PP=2965;QD=20;SC=ACACACACACCCACACACTTA;SbPval=0.51;Source=Platypus;TC=264;TCF=168;TCR=96;TR=262;WE=7001267;WS=7001249;set=Platypus	GT:AD:AF:DP	1/1:2,262:0.99:264
chr2	7003879	rs2712039	G	A	997.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr2	7005069	rs2595172	C	T	10877.77	.	AC=2;AF=1.00;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	1/1:0,387:1.00:387
chr2	7005369	rs11678810	A	G	9519.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:0,343:1.00:343
chr2	7005992	rs4669108	C	T	2900.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr2	7017903	rs10182815	A	G	5241.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr2	7019079	rs6704746	A	G	12619.77	.	AC=2;AF=1.00;AN=2;DB;DP=484;set=Intersection	GT:AD:AF:DP	1/1:0,480:1.00:480
chr2	7026958	rs10197837	T	A	773.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:20,31:0.61:51
chr2	7027323	rs9917321	T	A	2532.77	.	AC=1;AF=0.500;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	0/1:241,131:0.35:372
chr2	7030541	rs2305258	C	T	998.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:14,41:0.75:55
chr2	7046272	.	TACACACACACACACACAC	T,TACACACACACAC	9505.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=358;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.98;QD=33.59;SOR=3.749;set=HC	GT:AD:AF:DP	1/2:0,218,65:0.77,0.23:283
chr2	7046309	rs13395107	A	T	7936.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.260;ClippingRankSum=0.000;DB;DP=481;ExcessHet=3.0103;FS=2.800;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=-1.232;QD=17.80;ReadPosRankSum=0.671;SOR=0.960;set=HC	GT:AD:AF:DP	0/1:161,285:0.64:446
chr2	7050483	rs145080587	ATGTGTGTG	A	2787.73	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:52,88:0.63:140
chr2	7050520	.	AAG	A	2986	.	AC=1;AF=0.500;AN=2;BRF=0.29;FR=0.5000;HP=2;HapScore=1;MGOF=80;MMLQ=21;MQ=60.47;NF=0;NR=68;PP=2986;QD=20;SC=TGTGTGTAGAAAGAGAGAGAG;SbPval=1.0;Source=Platypus;TC=98;TCF=0;TCR=98;TR=68;WE=7050529;WS=7050510;set=Platypus	GT:AD:AF:DP	0/1:30,68:0.69:98
chr2	7076975	rs55971680	A	AGTGTGT	2249.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.378;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=3.655;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=0.000;QD=31.69;ReadPosRankSum=1.163;SOR=2.387;set=HC	GT:AD:AF:DP	1/1:4,67:0.94:71
chr2	7130516	rs373910830	TACACACACACAC	T,TACACAC	2122.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.363;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=27.93;ReadPosRankSum=1.198;SOR=0.298;set=HC	GT:AD:AF:DP	1/2:1,45,30:0.59,0.39:76
chr2	7130533	.	A	G	91.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.724;ClippingRankSum=0.000;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.93;ReadPosRankSum=3.611;SOR=0.585;set=HC	GT:AD:AF:DP	0/1:85,14:0.14:99
chr2	7130599	rs34954937	CATATA	C	406.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.390;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=4.715;MLEAC=1;MLEAF=0.500;MQ=59.50;MQRankSum=0.000;QD=12.71;ReadPosRankSum=-1.800;SOR=0.145;set=HC	GT:AD:AF:DP	0/1:20,12:0.38:32
chr2	7137067	rs364891	A	G	2156.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr2	7154632	rs309325	T	C	24097.77	.	AC=2;AF=1.00;AN=2;DB;DP=934;set=Intersection	GT:AD:AF:DP	1/1:2,922:1.00:924
chr2	7154826	rs58700190	A	AT	1943.73	.	AC=1;AF=0.500;AN=2;DB;DP=487;set=Intersection	GT:AD:AF:DP	0/1:288,145:0.33:433
chr2	7164483	rs6709878	C	T	5339.77	.	AC=1;AF=0.500;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	0/1:111,235:0.68:346
chr2	7170388	rs71402828	CTGTGTGTGTGTG	C,CTGTGTGTGTG	5313.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.195;ClippingRankSum=0.000;DB;DP=546;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.26;MQRankSum=0.805;QD=27.82;ReadPosRankSum=0.511;SOR=0.771;set=HC	GT:AD:AF:DP	1/2:8,148,35:0.77,0.18:191
chr2	7187199	rs6722170	A	G	9553.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.397;ClippingRankSum=0.000;DB;DP=356;ExcessHet=3.0103;FS=2.785;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.99;ReadPosRankSum=-0.688;SOR=0.525;set=HC	GT:AD:AF:DP	0/1:117,237:0.67:354
chr2	7187209	rs6707249	C	G	10347.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.042;ClippingRankSum=0.000;DB;DP=424;ExcessHet=3.0103;FS=1.300;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.76;ReadPosRankSum=0.045;SOR=0.552;set=HC	GT:AD:AF:DP	0/1:142,276:0.66:418
chr2	7187397	rs71402829	CTA	C	13973.73	.	AC=1;AF=0.500;AN=2;DB;DP=597;set=Intersection	GT:AD:AF:DP	0/1:197,370:0.65:567
chr2	7243449	rs10617957	AGTGTGT	A	3135.73	.	AC=1;AF=0.500;AN=2;DB;DP=499;set=Intersection	GT:AD:AF:DP	0/1:293,172:0.37:465
chr2	7249826	.	ATG	A	100.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.697;ClippingRankSum=0.000;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.36;ReadPosRankSum=-1.749;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:64,10:0.14:74
chr2	7386192	rs72770055	T	C	2582.77	.	AC=1;AF=0.500;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	0/1:304,142:0.32:446
chr2	7403641	rs111726098	T	TACACAC	229.73	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:142,29:0.17:171
chr2	7409989	rs10548278	TTG	T	686.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.205;ClippingRankSum=0.000;DB;DP=631;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=3.486;QD=1.44;ReadPosRankSum=-0.770;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:414,64:0.13:478
chr2	7421557	rs4668533	C	G	2170.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:37,82:0.69:119
chr2	7421569	rs142314951	C	CTG	634.73	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:96,36:0.27:132
chr2	7421778	rs4668534	A	T	5338.77	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:99,234:0.70:333
chr2	7421860	rs57998976	A	T	1527.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:27,60:0.69:87
chr2	7471480	.	T	TCACACA	2119.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.367;ClippingRankSum=0.000;DP=139;ExcessHet=3.0103;FS=0.894;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=-0.830;QD=17.52;ReadPosRankSum=2.071;SOR=0.592;set=HC	GT:AD:AF:DP	0/1:53,68:0.56:121
chr2	7471732	rs6732990	G	A	627.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:30,26:0.46:56
chr2	8178735	rs1364054	A	G	2162.77	.	AC=1;AF=0.500;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	0/1:233,118:0.34:351
chr2	8178798	rs62104935	C	T	1547.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:182,87:0.32:269
chr2	8822892	.	CA	C	170.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.067;ClippingRankSum=0.000;DP=289;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.70;ReadPosRankSum=1.421;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:180,63:0.26:243
chr2	8822912	rs3845751	A	C,AC	9846.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=4.266;ClippingRankSum=0.000;DB;DP=429;ExcessHet=3.0103;FS=18.367;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=40.69;ReadPosRankSum=0.071;SOR=0.020;set=HC	GT:AD:AF:DP	1/2:17,164,61:0.68,0.25:242
chr2	8870814	rs6431959	A	G	9486.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:0,334:1.00:334
chr2	8872150	.	TAAG	T	1493.73	.	AC=1;AF=0.500;AN=2;DP=85;set=Intersection	GT:AD:AF:DP	0/1:32,40:0.56:72
chr2	8887910	rs1978841	A	T	3685.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr2	8910987	rs12476359	A	T	8573.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr2	8911010	rs17630893	T	C	6231.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr2	8916847	rs4669338	A	T	2581.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr2	8943291	rs2356658	G	A	3007.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr2	8998624	rs10929559	A	G	2675.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr2	8998775	rs71657308	C	CA	323.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.671;ClippingRankSum=0.000;DB;DP=448;ExcessHet=3.0103;FS=1.067;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=2.103;QD=0.78;ReadPosRankSum=0.288;SOR=0.798;set=HC	GT:AD:AF:DP	0/1:338,77:0.19:415
chr2	9419411	rs10193043	G	A	18656.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.903;ClippingRankSum=0.000;DB;DP=423;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=44.63;ReadPosRankSum=-0.393;SOR=1.281;set=HC	GT:AD:AF:DP	1/1:2,416:1.00:418
chr2	9419415	rs10170149	C	T	18920.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.894;ClippingRankSum=0.000;DB;DP=440;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=43.50;ReadPosRankSum=-0.968;SOR=1.219;set=HC	GT:AD:AF:DP	1/1:2,433:1.00:435
chr2	9463454	rs12475160	C	T	9173.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:0,343:1.00:343
chr2	9484542	rs6724103	C	T	6108.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr2	9484561	rs79044067	TAAAA	T	11740.73	.	AC=2;AF=1.00;AN=2;DB;DP=268;MQ=60.28;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr2	9491017	rs4669385	C	T	10589.77	.	AC=2;AF=1.00;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	1/1:0,375:1.00:375
chr2	9515099	.	TA	T	199.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.826;ClippingRankSum=0.000;DP=88;ExcessHet=3.0103;FS=1.092;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=1.658;QD=3.03;ReadPosRankSum=-1.258;SOR=0.459;set=HC	GT:AD:AF:DP	0/1:43,23:0.35:66
chr2	9518951	rs116096796	A	G	1727.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:140,81:0.37:221
chr2	9558905	.	CT	C	816.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.508;ClippingRankSum=0.000;DP=462;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=2.496;QD=2.86;ReadPosRankSum=-1.049;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:177,109:0.38:286
chr2	9563806	rs145913928	G	T	2903.77	.	AC=1;AF=0.500;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	0/1:292,153:0.34:445
chr2	9597276	.	ATGTG	A	276.06	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.349;ClippingRankSum=-0.000;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=23.01;ReadPosRankSum=1.164;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:4,8:0.67:12
chr2	9630758	rs147722775	C	T	57.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.190;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=5.333;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.22;ReadPosRankSum=-1.980;SOR=0.083;set=HC	GT:AD:AF:DP	0/1:20,6:0.23:26
chr2	9633092	rs61754177	C	T	1883.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:184,105:0.36:289
chr2	9981745	.	T	TA	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.337;ClippingRankSum=0.000;DP=265;ExcessHet=3.0103;FS=1.495;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=0.000;QD=0.14;ReadPosRankSum=2.389;SOR=0.546;set=HC	GT:AD:AF:DP	0/1:211,37:0.15:248
chr2	9983591	rs35818430	A	AG	12883.73	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chr2	9983686	rs2303914	G	T	6759.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr2	9983716	rs385513	A	C	5554.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr2	9989442	rs16867195	A	G	1060.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;MQ=60.06;set=Intersection	GT:AD:AF:DP	0/1:107,60:0.36:167
chr2	9991556	rs287991	G	A	519.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:2,25:0.93:27
chr2	9994288	rs4669471	C	G	879.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:73,38:0.34:111
chr2	10008872	rs12623017	A	G	2271.77	.	AC=1;AF=0.500;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	0/1:208,121:0.37:329
chr2	10044941	rs450192	G	T	1478.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:174,76:0.30:250
chr2	10044951	rs2052948	A	G	4863.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:85,215:0.72:300
chr2	10045014	rs400917	C	T	16141.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.899;ClippingRankSum=0.000;DB;DP=637;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.99;ReadPosRankSum=1.842;SOR=0.949;set=HC	GT:AD:AF:DP	1/1:2,619:1.00:621
chr2	10045024	rs396190	G	A	30051.77	.	AC=2;AF=1.00;AN=2;DB;DP=704;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.93;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,700:1.00:700
chr2	10045147	rs448327	A	G	17504.77	.	AC=2;AF=1.00;AN=2;DB;DP=656;set=Intersection	GT:AD:AF:DP	1/1:0,645:1.00:645
chr2	10050947	rs1054561	T	C	827.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:152,53:0.26:205
chr2	10050960	rs1054565	A	G	877.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:130,53:0.29:183
chr2	10051053	rs10495576	G	C	146.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:35,10:0.22:45
chr2	10053412	rs12467598	C	T	3338.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.727;ClippingRankSum=0.000;DB;DP=780;ExcessHet=3.0103;FS=0.584;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.36;ReadPosRankSum=0.345;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:555,210:0.27:765
chr2	10059097	rs2303921	A	C	11087.77	.	AC=1;AF=0.500;AN=2;DB;DP=825;set=Intersection	GT:AD:AF:DP	0/1:297,518:0.64:815
chr2	10059770	rs1820965	G	T	3224.77	.	AC=1;AF=0.500;AN=2;DB;DP=550;set=Intersection	GT:AD:AF:DP	0/1:361,182:0.34:543
chr2	10085499	rs891502	T	C	568.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:32,28:0.47:60
chr2	10094992	rs2303918	A	G	7427.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr2	10102791	rs146261147	T	C	617.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:66,29:0.31:95
chr2	10105584	.	A	AT	65.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.271;ClippingRankSum=0.000;DP=207;ExcessHet=3.0103;FS=3.247;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=0.000;QD=0.39;ReadPosRankSum=-1.708;SOR=1.137;set=HC	GT:AD:AF:DP	0/1:138,29:0.17:167
chr2	10132118	.	A	AT	290.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.746;ClippingRankSum=0.000;DP=798;ExcessHet=3.0103;FS=2.500;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.39;ReadPosRankSum=0.855;SOR=0.642;set=HC	GT:AD:AF:DP	0/1:631,123:0.16:754
chr2	10138953	.	CAT	C	113	.	AC=1;AF=0.500;AN=2;BRF=0.19;FR=0.5000;HP=2;HapScore=2;MGOF=39;MMLQ=22;MQ=58.38;NF=9;NR=0;PP=113;QD=14.5555555556;SC=TATATGTACACATATATATAT;SbPval=1.0;Source=Platypus;TC=19;TCF=18;TCR=1;TR=9;WE=10138962;WS=10138943;set=Platypus	GT:AD:AF:DP	1/0:10,9:0.47:19
chr2	10225241	rs6432058	C	T	4906.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr2	10226306	rs34098251	G	GC	10021.73	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr2	10262920	rs1130609	T	G	14392.77	.	AC=2;AF=1.00;AN=2;DB;DP=530;set=Intersection	GT:AD:AF:DP	1/1:0,523:1.00:523
chr2	10264057	rs6432065	T	C	16539.77	.	AC=2;AF=1.00;AN=2;DB;DP=653;set=Intersection	GT:AD:AF:DP	1/1:0,645:1.00:645
chr2	10281903	rs5829249	G	GC	7483.73	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr2	10282147	rs11896140	T	C	19704.77	.	AC=2;AF=1.00;AN=2;DB;DP=723;set=Intersection	GT:AD:AF:DP	1/1:0,712:1.00:712
chr2	10332539	rs13392520	A	G	986.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:21,35:0.62:56
chr2	10560335	.	CT	C	301.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.282;ClippingRankSum=0.000;DP=181;ExcessHet=3.0103;FS=7.114;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=1.568;QD=3.43;ReadPosRankSum=-0.845;SOR=1.867;set=HC	GT:AD:AF:DP	0/1:47,41:0.47:88
chr2	10595534	rs6721235	T	C	6498.77	.	AC=1;AF=0.500;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	0/1:142,274:0.66:416
chr2	10595691	rs6731439	G	A	3641.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:97,157:0.62:254
chr2	10717806	rs2287059	C	T	4893.77	.	AC=1;AF=0.500;AN=2;DB;DP=717;set=Intersection	GT:AD:AF:DP	0/1:447,267:0.37:714
chr2	10762302	rs70953325	TA	T	23052.73	.	AC=2;AF=1.00;AN=2;DB;DP=665;MQ=60.16;set=Intersection	GT:AD:AF:DP	1/1:0,639:1.00:639
chr2	10774531	rs77767350	C	T	510.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:40,23:0.37:63
chr2	10808776	rs55925118	C	CAA	8081.73	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr2	10813782	rs6748766	T	C	2528.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr2	10908893	rs1198849	A	G	2449.77	.	AC=1;AF=0.500;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	0/1:300,138:0.32:438
chr2	10911891	rs1198850	T	C	4472.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:2,160:0.99:162
chr2	10912153	rs2171773	T	G	1238.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:33,47:0.59:80
chr2	10915020	rs2969881	A	G	3601.77	.	AC=1;AF=0.500;AN=2;DB;DP=650;set=Intersection	GT:AD:AF:DP	0/1:432,213:0.33:645
chr2	10915090	rs58188788	T	A	10171.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.773;ClippingRankSum=0.000;DB;DP=732;ExcessHet=3.0103;FS=0.557;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.09;ReadPosRankSum=0.051;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:233,489:0.68:722
chr2	10922516	rs1686482	A	C	1218.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:89,61:0.41:150
chr2	10924524	rs1198873	T	C	481.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.028;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=6.341;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.87;ReadPosRankSum=0.428;SOR=0.274;set=HC	GT:AD:AF:DP	0/1:68,31:0.31:99
chr2	10927345	rs1686510	T	C	123.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.231;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=3.746;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.20;ReadPosRankSum=0.452;SOR=1.244;set=HC	GT:AD:AF:DP	0/1:86,17:0.17:103
chr2	10928694	rs11409434	G	GA	416.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.974;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=8.286;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=0.759;QD=2.98;ReadPosRankSum=0.242;SOR=1.638;set=HC	GT:AD:AF:DP	0/1:97,43:0.31:140
chr2	10928710	rs1734433	A	C	714.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.300;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=5.782;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=2.396;QD=3.54;ReadPosRankSum=0.490;SOR=0.350;set=HC	GT:AD:AF:DP	0/1:154,48:0.24:202
chr2	10928777	rs2952626	A	C	3692.77	.	AC=1;AF=0.500;AN=2;DB;DP=682;set=Intersection	GT:AD:AF:DP	0/1:457,214:0.32:671
chr2	10928906	rs1734432	T	C	4728.77	.	AC=1;AF=0.500;AN=2;DB;DP=828;set=Intersection	GT:AD:AF:DP	0/1:558,260:0.32:818
chr2	10928962	rs1734431	A	G	4256.77	.	AC=1;AF=0.500;AN=2;DB;DP=658;set=Intersection	GT:AD:AF:DP	0/1:430,221:0.34:651
chr2	10929133	rs1734430	A	G	478.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.204;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.92;ReadPosRankSum=0.118;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:94,28:0.23:122
chr2	10929867	rs11904084	T	C	2988.77	.	AC=1;AF=0.500;AN=2;DB;DP=524;set=Intersection	GT:AD:AF:DP	0/1:342,177:0.34:519
chr2	10930050	rs1686514	A	T	969.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:79,50:0.39:129
chr2	10930106	rs200934850	ATTTT	A	309.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.504;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.08;ReadPosRankSum=-2.176;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:12,10:0.45:22
chr2	10930903	rs4807	T	C	5179.77	.	AC=1;AF=0.500;AN=2;DB;DP=890;set=Intersection	GT:AD:AF:DP	0/1:590,290:0.33:880
chr2	10931001	rs1614107	A	G	1064.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:105,51:0.33:156
chr2	10932082	rs1734421	T	C	2277.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:194,98:0.34:292
chr2	10933249	rs4799	C	T	3638.77	.	AC=1;AF=0.500;AN=2;DB;DP=659;set=Intersection	GT:AD:AF:DP	0/1:437,208:0.32:645
chr2	10933346	rs143770934	T	TAGGC	2068.73	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:147,61:0.29:208
chr2	10937037	rs1734343	T	G	488.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:39,21:0.35:60
chr2	10937065	rs1734344	T	C	651.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:79,34:0.30:113
chr2	10937409	rs1686444	C	T	550.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.865;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=0.985;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.93;ReadPosRankSum=-1.006;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:107,33:0.24:140
chr2	10938043	rs56346617	T	G	433.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:43,22:0.34:65
chr2	10942567	rs1686434	G	A	1168.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:88,51:0.37:139
chr2	10942687	rs4758	C	T	5820.77	.	AC=1;AF=0.500;AN=2;DB;DP=879;set=Intersection	GT:AD:AF:DP	0/1:556,313:0.36:869
chr2	10950284	rs1734449	G	C	1599.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:186,90:0.33:276
chr2	10952790	rs6726687	T	C	4480.77	.	AC=1;AF=0.500;AN=2;DB;DP=767;set=Intersection	GT:AD:AF:DP	0/1:504,260:0.34:764
chr2	10961184	rs1686497	A	G	217.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:35,12:0.26:47
chr2	10987581	rs73174567	T	A	4365.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.011;ClippingRankSum=0.000;DB;DP=316;ExcessHet=3.0103;FS=3.666;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.13;ReadPosRankSum=2.159;SOR=0.501;set=HC	GT:AD:AF:DP	0/1:101,208:0.67:309
chr2	10994418	rs1198852	T	C	3877.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr2	10994840	rs191812613	C	T	1938.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.319;ClippingRankSum=0.000;DB;DP=364;ExcessHet=3.0103;FS=1.921;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.48;ReadPosRankSum=-0.308;SOR=0.585;set=HC	GT:AD:AF:DP	0/1:242,112:0.32:354
chr2	11053020	rs3732104	A	G	21968.77	.	AC=2;AF=1.00;AN=2;DB;DP=811;set=Intersection	GT:AD:AF:DP	1/1:0,796:1.00:796
chr2	11053740	rs3732105	C	T	22176.77	.	AC=2;AF=1.00;AN=2;DB;DP=819;set=Intersection	GT:AD:AF:DP	1/1:0,806:1.00:806
chr2	11264830	rs7560331	G	A	12949.77	.	AC=1;AF=0.500;AN=2;DB;DP=850;set=Intersection	GT:AD:AF:DP	0/1:268,572:0.68:840
chr2	11273407	.	GTC	G	4364.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.382;ClippingRankSum=0.000;DP=1067;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=1.931;QD=4.63;ReadPosRankSum=-0.240;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:711,232:0.25:943
chr2	11280500	rs10611339	TA	T	754.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.177;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=1.161;QD=7.05;ReadPosRankSum=-1.820;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:27,80:0.75:107
chr2	11295186	.	G	C	420.77	.	AC=1;AF=0.500;AN=2;DP=28;set=Intersection	GT:AD:AF:DP	0/1:11,17:0.61:28
chr2	11295226	rs148805827	C	CG	1152.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr2	11295867	rs7598570	G	C	4947.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr2	11300732	rs2271622	C	T	35502.77	.	AC=2;AF=1.00;AN=2;DB;DP=1332;set=Intersection	GT:AD:AF:DP	1/1:2,1314:1.00:1316
chr2	11300869	rs6432182	T	C	18116.77	.	AC=2;AF=1.00;AN=2;DB;DP=703;set=Intersection	GT:AD:AF:DP	1/1:0,692:1.00:692
chr2	11300927	.	TAAAA	T,TA	5863.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=276;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.16;QD=30.07;SOR=2.659;set=HC	GT:AD:AF:DP	1/2:6,94,95:0.48,0.49:195
chr2	11304471	.	A	ATATT	2493.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.133;ClippingRankSum=0.000;DP=218;ExcessHet=3.0103;FS=7.611;MLEAC=1;MLEAF=0.500;MQ=62.44;MQRankSum=0.585;QD=14.09;ReadPosRankSum=1.538;SOR=0.087;set=HC	GT:AD:AF:DP	0/1:42,135:0.76:177
chr2	11311895	rs190520586	C	T	731.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:58,32:0.36:90
chr2	11312181	rs12987956	G	A	7456.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr2	11312224	rs3732103	C	T	3379.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr2	11348364	rs141148984	C	CTAACT	1956.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:1,43:0.98:44
chr2	11348609	rs5829297	CAAAT	C	2294.73	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr2	11356190	rs726843	G	A	2011.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr2	11357100	rs57554471	G	A	1374.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr2	11359031	rs9808228	G	T	876.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	11359120	rs2230774	G	T	2297.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr2	11359300	rs17463952	C	T	1128.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr2	11590393	.	T	TA	127.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.019;ClippingRankSum=0.000;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.94;ReadPosRankSum=-1.789;SOR=0.533;set=HC	GT:AD:AF:DP	0/1:48,18:0.27:66
chr2	11680896	rs34137466	CAA	C	3568.73	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr2	11702661	rs10929757	A	C	9636.77	.	AC=2;AF=1.00;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	1/1:0,360:1.00:360
chr2	11718591	rs1529868	C	T	8449.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr2	11738091	rs1435547	T	C	22797.77	.	AC=2;AF=1.00;AN=2;DB;DP=893;set=Intersection	GT:AD:AF:DP	1/1:0,884:1.00:884
chr2	11738765	rs1865575	C	T	5625.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr2	11741193	rs11681838	C	A	2873.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr2	11752635	rs2304399	T	C	3891.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr2	11755443	rs2252958	T	G	2427.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr2	11757009	rs6735957	A	G	2592.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr2	11758516	rs140938943	C	G	8082.77	.	AC=1;AF=0.500;AN=2;DB;DP=494;set=Intersection	GT:AD:AF:DP	0/1:141,346:0.71:487
chr2	11774324	rs2304402	G	A	21630.77	.	AC=2;AF=1.00;AN=2;DB;DP=828;set=Intersection	GT:AD:AF:DP	1/1:2,817:1.00:819
chr2	11778184	rs33962728	G	A	1933.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:33,77:0.70:110
chr2	11810095	rs6432225	G	A	12407.77	.	AC=2;AF=1.00;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	1/1:0,452:1.00:452
chr2	11817812	rs4669769	G	C	14211.77	.	AC=2;AF=1.00;AN=2;DB;DP=532;set=Intersection	GT:AD:AF:DP	1/1:0,529:1.00:529
chr2	11853774	rs12465629	T	C	204.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:17,10:0.37:27
chr2	11853913	rs4614906	G	A	2975.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:72,134:0.65:206
chr2	11853964	rs4640359	G	A	4457.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:92,205:0.69:297
chr2	11853988	rs12465630	A	T	1524.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:203,93:0.31:296
chr2	11854099	rs4668739	T	C	378.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:61,24:0.28:85
chr2	11928478	.	G	T	2557.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.144;ClippingRankSum=0.000;DP=630;ExcessHet=3.0103;FS=2.933;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.15;ReadPosRankSum=1.279;SOR=0.974;set=HC	GT:AD:AF:DP	0/1:458,159:0.26:617
chr2	11977154	rs79515884	C	T	3983.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:95,174:0.65:269
chr2	12877501	rs5829384	G	GA	14162.73	.	AC=1;AF=0.500;AN=2;DB;DP=642;set=Intersection	GT:AD:AF:DP	0/1:231,400:0.63:631
chr2	13554931	rs73916272	A	G	3682.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:89,163:0.65:252
chr2	15319070	rs5829492	TA	T	2447.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.346;ClippingRankSum=0.000;DB;DP=327;ExcessHet=3.0103;FS=1.033;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=0.000;QD=7.87;ReadPosRankSum=0.705;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:119,192:0.62:311
chr2	15319336	rs139756644	CGT	C	122.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.893;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.95;ReadPosRankSum=-1.108;SOR=0.426;set=HC	GT:AD:AF:DP	0/1:53,10:0.16:63
chr2	15378822	rs140225141	G	GAATT	2806.73	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr2	15415525	rs3755127	C	T	3382.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:83,143:0.63:226
chr2	15417280	rs3214432	ATT	A	3138.73	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:46,84:0.65:130
chr2	15417285	rs75287593	T	A	3118.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:45,84:0.65:129
chr2	15427173	rs4668892	C	T	6844.77	.	AC=1;AF=0.500;AN=2;DB;DP=466;set=Intersection	GT:AD:AF:DP	0/1:152,309:0.67:461
chr2	15448311	rs1318102	A	T	6803.77	.	AC=1;AF=0.500;AN=2;DB;DP=500;set=Intersection	GT:AD:AF:DP	0/1:179,306:0.63:485
chr2	15470848	rs34395824	C	T	791.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:132,51:0.28:183
chr2	15491952	.	TCA	T	1394	.	AC=1;AF=0.500;AN=2;BRF=0.38;FR=0.5000;HP=2;HapScore=1;MGOF=59;MMLQ=23;MQ=60.05;NF=88;NR=48;PP=1394;QD=10.3308823529;SC=ATGTTATATTTCACACACACA;SbPval=0.14;Source=Platypus;TC=231;TCF=167;TCR=64;TR=136;WE=15491961;WS=15491942;set=Platypus	GT:AD:AF:DP	1/0:95,136:0.59:231
chr2	15491994	rs10605991	GCACACACACA	G	5650.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.517;ClippingRankSum=0.000;DB;DP=729;ExcessHet=3.0103;FS=6.156;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=1.082;QD=11.30;ReadPosRankSum=0.460;SOR=0.449;set=HC	GT:AD:AF:DP	0/1:307,193:0.39:500
chr2	15493881	rs2277915	A	G	2220.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:135,107:0.44:242
chr2	15519992	rs2058866	G	T	838.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:114,50:0.30:164
chr2	15523266	rs6756934	A	T	2625.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr2	15523307	rs3834149	TA	T	823.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.256;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=1.390;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.214;QD=5.57;ReadPosRankSum=1.315;SOR=0.547;set=HC	GT:AD:AF:DP	0/1:89,59:0.40:148
chr2	15523549	rs3755129	T	C	454.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:44,21:0.32:65
chr2	15533689	rs2380650	T	C	495.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:66,26:0.28:92
chr2	15533734	rs139494535	G	GAAATGAAAGCGTATGTCTACAC	1904.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.331;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=5.302;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.13;ReadPosRankSum=1.381;SOR=1.125;set=HC	GT:AD:AF:DP	0/1:144,44:0.23:188
chr2	15533779	rs9710889	G	A	1444.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:222,88:0.28:310
chr2	15533884	rs9710962	C	A	1885.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:99,56:0.36:155
chr2	15533895	rs13417550	A	G	1630.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.106;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=1.541;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.45;ReadPosRankSum=0.464;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:85,46:0.35:131
chr2	15533899	rs11689153	A	G	1565.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.153;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=1.640;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.53;ReadPosRankSum=0.850;SOR=0.926;set=HC	GT:AD:AF:DP	0/1:83,42:0.34:125
chr2	15536509	.	G	GA	121.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.668;ClippingRankSum=0.000;DP=245;ExcessHet=3.0103;FS=2.475;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=3.287;QD=0.56;ReadPosRankSum=0.097;SOR=0.948;set=HC	GT:AD:AF:DP	0/1:178,41:0.19:219
chr2	15564718	rs10929367	T	C	896.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:75,40:0.35:115
chr2	15567649	rs3796002	T	C	518.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:36,22:0.38:58
chr2	15601287	rs11411624	A	AT	3986.73	.	AC=1;AF=0.500;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	0/1:246,132:0.35:378
chr2	15601441	rs7590340	C	T	4179.77	.	AC=1;AF=0.500;AN=2;DB;DP=683;set=Intersection	GT:AD:AF:DP	0/1:448,231:0.34:679
chr2	15601574	rs7590458	C	T	462.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:70,25:0.26:95
chr2	15607842	rs4668909	T	C	1193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.382;ClippingRankSum=0.000;DB;DP=233;ExcessHet=3.0103;FS=1.738;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.24;ReadPosRankSum=-1.440;SOR=0.853;set=HC	GT:AD:AF:DP	0/1:155,73:0.32:228
chr2	15608013	rs4668910	C	A	170.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:18,8:0.31:26
chr2	15614404	rs13014906	T	C	3358.77	.	AC=1;AF=0.500;AN=2;DB;DP=498;set=Intersection	GT:AD:AF:DP	0/1:317,176:0.36:493
chr2	15615910	rs1990754	A	G	5081.77	.	AC=1;AF=0.500;AN=2;DB;DP=816;set=Intersection	GT:AD:AF:DP	0/1:519,290:0.36:809
chr2	15616013	rs1990755	C	G	2773.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.410;ClippingRankSum=0.000;DB;DP=440;ExcessHet=3.0103;FS=4.298;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.53;ReadPosRankSum=0.632;SOR=0.474;set=HC	GT:AD:AF:DP	0/1:269,156:0.37:425
chr2	15616030	rs1990756	C	T	2199.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.597;ClippingRankSum=0.000;DB;DP=334;ExcessHet=3.0103;FS=4.733;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.79;ReadPosRankSum=1.232;SOR=0.472;set=HC	GT:AD:AF:DP	0/1:204,120:0.37:324
chr2	15618339	rs1125534	G	A	454.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.360;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=1.648;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=-1.723;QD=3.42;ReadPosRankSum=-1.785;SOR=0.520;set=HC	GT:AD:AF:DP	0/1:100,33:0.25:133
chr2	15623608	rs10201564	C	G	275.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:38,14:0.27:52
chr2	15644107	rs3732002	C	A	2150.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.770;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=0.850;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.10;ReadPosRankSum=-0.101;SOR=0.835;set=HC	GT:AD:AF:DP	0/1:150,63:0.30:213
chr2	15644111	rs3732003	C	T	2307.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.410;ClippingRankSum=0.000;DB;DP=227;ExcessHet=3.0103;FS=1.710;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.26;ReadPosRankSum=-1.451;SOR=0.893;set=HC	GT:AD:AF:DP	0/1:155,70:0.31:225
chr2	15644401	rs2287265	C	T	1781.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:180,89:0.33:269
chr2	15674686	rs13029846	T	C	3325.77	.	AC=1;AF=0.500;AN=2;DB;DP=540;set=Intersection	GT:AD:AF:DP	0/1:355,182:0.34:537
chr2	15676686	rs10208972	G	A	2816.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.977;ClippingRankSum=0.000;DB;DP=458;ExcessHet=3.0103;FS=1.177;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.20;ReadPosRankSum=-0.756;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:294,160:0.35:454
chr2	15676703	rs57935128	T	TA	594.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.240;ClippingRankSum=0.000;DB;DP=304;ExcessHet=3.0103;FS=2.048;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.31;ReadPosRankSum=2.299;SOR=0.864;set=HC	GT:AD:AF:DP	0/1:186,71:0.28:257
chr2	15678368	rs7595512	C	T	665.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:49,33:0.40:82
chr2	15678482	rs2380657	T	C	2413.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:186,124:0.40:310
chr2	15678501	rs66736557	GA	G	1601.73	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:176,114:0.39:290
chr2	15679609	rs2058868	A	T	158.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:25,9:0.26:34
chr2	15691791	rs55977282	G	T	2637.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:72,113:0.61:185
chr2	15691886	rs7572131	G	A	435.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:21,18:0.46:39
chr2	15694164	rs34789730	T	TA	6414.73	.	AC=1;AF=0.500;AN=2;DB;DP=521;set=Intersection	GT:AD:AF:DP	0/1:317,197:0.38:514
chr2	15731998	rs10221770	A	G	4490.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr2	15732238	rs73915402	G	C	559.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:37,29:0.44:66
chr2	15735648	rs2302929	T	C	7366.77	.	AC=1;AF=0.500;AN=2;DB;DP=493;set=Intersection	GT:AD:AF:DP	0/1:152,333:0.69:485
chr2	15736697	rs2032778	G	A	393.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:16,18:0.53:34
chr2	15737480	rs2302931	C	A	483.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:68,28:0.29:96
chr2	15737698	rs2302932	G	A	211.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:23,11:0.32:34
chr2	15744123	rs3213793	T	G	617.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:59,33:0.36:92
chr2	15746220	rs41264195	C	T	6133.77	.	AC=1;AF=0.500;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	0/1:127,264:0.68:391
chr2	15747234	rs55800266	G	A	2393.77	.	AC=1;AF=0.500;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:190,121:0.39:311
chr2	15747393	rs10929378	C	T	15733.77	.	AC=2;AF=1.00;AN=2;DB;DP=604;set=Intersection	GT:AD:AF:DP	1/1:0,590:1.00:590
chr2	15753279	rs2302934	C	G	838.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:16,36:0.69:52
chr2	15753307	rs3217220	A	AT	276.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.947;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=3.562;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.64;ReadPosRankSum=-0.679;SOR=0.882;set=HC	GT:AD:AF:DP	0/1:48,28:0.37:76
chr2	15753482	rs2302935	C	G	356.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:54,22:0.29:76
chr2	15758293	rs3770466	T	C	869.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:89,50:0.36:139
chr2	15763788	rs41264163	C	T	823.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:49,38:0.44:87
chr2	15768846	rs3835049	AT	A	1869.73	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:172,122:0.41:294
chr2	15769607	rs807635	C	T	614.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:8,21:0.72:29
chr2	15770061	rs2302937	G	A	382.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:25,19:0.43:44
chr2	15770775	rs3770471	C	T	258.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:38,14:0.27:52
chr2	15840505	rs4668460	C	A	6127.77	.	AC=1;AF=0.500;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	0/1:118,270:0.70:388
chr2	15840522	rs4668461	G	T	7221.77	.	AC=1;AF=0.500;AN=2;DB;DP=488;set=Intersection	GT:AD:AF:DP	0/1:150,326:0.68:476
chr2	15840645	rs4668962	T	C	8742.77	.	AC=1;AF=0.500;AN=2;DB;DP=564;set=Intersection	GT:AD:AF:DP	0/1:181,380:0.68:561
chr2	15841230	rs1421610	T	A	886.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:19,33:0.63:52
chr2	15841288	rs1421609	G	A	2551.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:42,98:0.70:140
chr2	15884555	rs10186235	G	A	197.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.418;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=1.488;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.53;ReadPosRankSum=1.053;SOR=1.136;set=HC	GT:AD:AF:DP	0/1:43,13:0.23:56
chr2	16734284	rs12997119	T	C	2436.77	.	AC=1;AF=0.500;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	0/1:284,143:0.33:427
chr2	16743453	rs6751062	A	C	775.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:78,42:0.35:120
chr2	16746897	rs62122698	C	G	491.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:40,23:0.37:63
chr2	17696573	rs834514	C	T	7706.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr2	17696614	.	G	T	1952.77	.	AC=1;AF=0.500;AN=2;DP=278;set=Intersection	GT:AD:AF:DP	0/1:173,101:0.37:274
chr2	17697635	rs181531922	T	C	4823.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:90,209:0.70:299
chr2	17698678	rs665312	A	G	9593.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,325:1.00:325
chr2	17773524	rs2680827	G	A	1920.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:36,84:0.70:120
chr2	17836722	rs3064980	T	TCA,TCACA	912.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-2.179;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=18.63;ReadPosRankSum=0.218;SOR=1.225;set=HC	GT:AD:AF:DP	1/2:8,29,12:0.59,0.24:49
chr2	17883218	rs11681696	T	A	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.089;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.02;ReadPosRankSum=-0.127;SOR=0.454;set=HC	GT:AD:AF:DP	0/1:30,6:0.17:36
chr2	17884495	rs1065381	C	T	514.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.105;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.52;ReadPosRankSum=0.288;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:160,44:0.22:204
chr2	17888457	rs6734462	G	A	1342.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:157,71:0.31:228
chr2	17890091	rs10657992	G	GTATA	552.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.178;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=9.367;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.000;QD=4.42;ReadPosRankSum=2.608;SOR=2.279;set=HC	GT:AD:AF:DP	0/1:99,26:0.21:125
chr2	17897488	rs35195207	T	C	2427.77	.	AC=1;AF=0.500;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	0/1:282,140:0.33:422
chr2	17898326	rs12469221	C	T	1046.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:228,72:0.24:300
chr2	17899558	rs77083822	C	G	172.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:22,9:0.29:31
chr2	17913266	rs2052746	A	C	3019.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:2,92:0.98:94
chr2	17927275	rs12474069	C	T	674.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:41,29:0.41:70
chr2	17941423	rs2555072	T	G	2289.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:42,93:0.69:135
chr2	17942775	rs1812152	T	A	8525.77	.	AC=1;AF=0.500;AN=2;DB;DP=659;set=Intersection	GT:AD:AF:DP	0/1:262,395:0.60:657
chr2	17954027	rs300175	G	A	9631.77	.	AC=2;AF=1.00;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	1/1:0,358:1.00:358
chr2	17954140	rs300176	A	G	1147.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:28,48:0.63:76
chr2	17954421	rs300177	C	G	848.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:18,36:0.67:54
chr2	17954647	rs300178	T	G	236.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:3,10:0.77:13
chr2	17959420	rs10535305	TAC	T,TACAC	1330.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=53;set=Intersection	GT:AF:DP	1/2:0.67,0.20:49
chr2	17959441	rs10535306	GTA	G	1126.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.388;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.48;ReadPosRankSum=-2.203;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:11,30:0.73:41
chr2	17959452	.	TATAC	T	317	.	AC=1;AF=0.500;AN=2;BRF=0.3;FR=0.5000;HP=2;HapScore=3;MGOF=85;MMLQ=25;MQ=58.65;NF=0;NR=27;PP=317;QD=12.1481481481;SC=TATATATATATATACACACAC;SbPval=1.0;Source=Platypus;TC=27;TCF=0;TCR=27;TR=27;WE=17959463;WS=17959431;set=Platypus	GT:AD:AF:DP	1/0:0,27:1.00:27
chr2	17962450	rs300168	A	G	5766.77	.	AC=1;AF=0.500;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	0/1:130,253:0.66:383
chr2	17962518	rs300169	C	T	5222.77	.	AC=1;AF=0.500;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	0/1:116,221:0.66:337
chr2	17962993	rs149936944	CAAGTT	C	14165.73	.	AC=1;AF=0.500;AN=2;DB;DP=546;set=Intersection	GT:AD:AF:DP	0/1:174,357:0.67:531
chr2	17998025	rs34069439	A	T	2618.77	.	AC=1;AF=0.500;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	0/1:285,138:0.33:423
chr2	17998095	rs35858730	C	T	3995.77	.	AC=1;AF=0.500;AN=2;DB;DP=535;set=Intersection	GT:AD:AF:DP	0/1:336,192:0.36:528
chr2	17998331	rs13001625	T	C	9670.77	.	AC=1;AF=0.500;AN=2;DB;DP=1506;set=Intersection	GT:AD:AF:DP	0/1:970,520:0.35:1490
chr2	18112473	rs4240213	G	A	18432.77	.	AC=2;AF=1.00;AN=2;DB;DP=707;set=Intersection	GT:AD:AF:DP	1/1:0,697:1.00:697
chr2	18113623	rs4832524	A	G	16788.77	.	AC=2;AF=1.00;AN=2;DB;DP=640;set=Intersection	GT:AD:AF:DP	1/1:1,617:1.00:618
chr2	18113789	rs3747515	G	A	4225.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr2	18767384	rs11096544	G	T	698.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:11,27:0.71:38
chr2	18768073	rs181521882	G	A	3728.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:77,159:0.67:236
chr2	19552913	rs12329305	C	T	1914.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:124,94:0.43:218
chr2	20131079	rs1191778	T	C	2837.77	.	AC=1;AF=0.500;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	0/1:201,145:0.42:346
chr2	20131184	rs1191779	C	A	5170.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr2	20131987	rs4294960	T	C	411.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:24,19:0.44:43
chr2	20135283	rs6741091	T	C	3929.77	.	AC=1;AF=0.500;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	0/1:251,194:0.44:445
chr2	20160250	rs12996974	G	C	667.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:47,33:0.41:80
chr2	20173255	rs10153717	A	C	1208.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:52,53:0.50:105
chr2	20174175	.	G	GA	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.581;ClippingRankSum=0.000;DP=135;ExcessHet=3.0103;FS=1.149;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.28;ReadPosRankSum=-1.074;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:99,23:0.19:122
chr2	20189089	rs3731663	C	T	4620.77	.	AC=1;AF=0.500;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	0/1:231,216:0.48:447
chr2	20192696	rs7569975	G	A	318.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:15,13:0.46:28
chr2	20192931	rs35973216	G	A	1230.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:41,59:0.59:100
chr2	20194036	rs3820949	G	C	1781.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:107,86:0.45:193
chr2	20202811	rs11681705	A	G	277.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:22,12:0.35:34
chr2	20202929	rs28452699	C	T	1807.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:119,90:0.43:209
chr2	20202965	.	A	T	2404.77	.	AC=1;AF=0.500;AN=2;DP=252;set=Intersection	GT:AD:AF:DP	0/1:139,110:0.44:249
chr2	20205423	rs5829721	A	AAAAG	1420.73	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:48,37:0.44:85
chr2	20205680	rs28401180	C	T	6330.77	.	AC=1;AF=0.500;AN=2;DB;DP=611;set=Intersection	GT:AD:AF:DP	0/1:303,301:0.50:604
chr2	20205848	rs28598872	G	A	5334.77	.	AC=1;AF=0.500;AN=2;DB;DP=489;set=Intersection	GT:AD:AF:DP	0/1:235,247:0.51:482
chr2	20233135	rs1191824	T	C	896.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:20,31:0.61:51
chr2	20237512	rs57679180	TA	T	136.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.549;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.63;MQRankSum=0.282;QD=9.77;ReadPosRankSum=-0.393;SOR=2.093;set=HC	GT:AD:AF:DP	0/1:2,12:0.86:14
chr2	20240668	rs3731673	C	A	4188.77	.	AC=1;AF=0.500;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	0/1:217,202:0.48:419
chr2	20302483	.	G	GAA	612.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.963;ClippingRankSum=0.000;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=63.00;MQRankSum=-0.677;QD=25.53;ReadPosRankSum=3.217;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:8,16:0.67:24
chr2	20302484	.	G	GAAGAAGAAGA	578.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.246;ClippingRankSum=0.000;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=63.11;MQRankSum=-0.890;QD=16.54;ReadPosRankSum=3.346;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:19,16:0.46:35
chr2	20302490	rs7586260	G	A	2961.73	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.86;QD=40.57;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:2,71:0.97:73
chr2	20302569	rs73223878	C	T	1472.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:80,76:0.49:156
chr2	20317940	rs116266259	T	C	2629.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:110,128:0.54:238
chr2	20401858	rs11350492	TA	T	75.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.863;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.46;ReadPosRankSum=0.332;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:35,17:0.33:52
chr2	20403794	rs10205485	A	T	5454.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr2	20403889	rs141073701	A	G	2391.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:126,121:0.49:247
chr2	20405050	rs6531225	A	C	1351.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr2	20423154	rs4666375	A	G	4695.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr2	20424062	rs138986173	G	A	703.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:24,31:0.56:55
chr2	20455176	.	G	GT	74.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.254;ClippingRankSum=0.000;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=2.295;QD=1.04;ReadPosRankSum=0.927;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:55,17:0.24:72
chr2	20526998	.	TA	T	85.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.010;ClippingRankSum=0.000;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.76;ReadPosRankSum=1.298;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:90,23:0.20:113
chr2	20699625	rs13010768	G	A	736.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:35,32:0.48:67
chr2	20699667	rs342089	C	G	1296.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:49,65:0.57:114
chr2	20700786	rs961496	C	T	742.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:32,32:0.50:64
chr2	20700900	rs342088	A	G	5333.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr2	20818454	rs3732152	T	A	12236.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.31;SOR=0.812;set=HC	GT:AD:AF:DP	1/1:0,337:1.00:337
chr2	20818454	.	TTCTG	ATCTA,ATCTG	2346	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.45;FR=0.5000,0.5000;HP=1;HapScore=1;MGOF=10;MMLQ=25;MQ=59.96;NF=82,149;NR=61,105;PP=2346,1833;QD=16.7794956284;SC=GGGGCTGGGCTTCTGGTTGGC;SbPval=0.46;Source=Platypus;TC=256;TCF=151;TCR=105;TR=143,254;WE=20818466;WS=20818444;set=Platypus	GT:AF:DP	0/1:0.56:256
chr2	20818458	rs3732151	G	A	3991.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.064;ClippingRankSum=0.000;DB;DP=350;ExcessHet=3.0103;FS=2.288;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.47;ReadPosRankSum=1.446;SOR=0.570;set=HC	GT:AD:AF:DP	0/1:161,187:0.54:348
chr2	20818517	rs3732150	T	C	4861.77	.	AC=1;AF=0.500;AN=2;DB;DP=491;set=Intersection	GT:AD:AF:DP	0/1:249,235:0.49:484
chr2	20822218	rs4666444	T	C	1355.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr2	20823612	rs13030108	A	G	2482.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr2	20823724	rs6531248	T	C	4136.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr2	20823816	rs2305460	G	T	712.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:46,32:0.41:78
chr2	20823850	rs6733419	T	C	1552.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.51;SOR=1.714;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr2	20823850	.	TGCTCTCTC	CGCTCTCTC,CGCTCTCTT	227	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.45;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=17;MMLQ=24;MQ=60.0;NF=10,6;NR=25,11;PP=227,192;QD=7.47917750135;SC=ATGCCATGGCTGCTCTCTCTC;SbPval=0.54;Source=Platypus;TC=35;TCF=10;TCR=25;TR=35,17;WE=20823866;WS=20823840;set=Platypus	GT:AF:DP	0/1:1.00:35
chr2	20823858	rs2305459	C	T	400.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.771;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.02;ReadPosRankSum=1.324;SOR=0.511;set=HC	GT:AD:AF:DP	0/1:20,20:0.50:40
chr2	20824498	rs2305458	C	T	2832.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:124,131:0.51:255
chr2	20824658	rs10199441	G	A	2196.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:134,105:0.44:239
chr2	20824691	rs17663045	C	T	2091.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:72,91:0.56:163
chr2	20824708	rs10191266	T	C	1314.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:63,58:0.48:121
chr2	20838318	rs3796064	G	A	5688.77	.	AC=1;AF=0.500;AN=2;DB;DP=542;set=Intersection	GT:AD:AF:DP	0/1:264,273:0.51:537
chr2	20838439	rs145186648	A	G	2379.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:179,115:0.39:294
chr2	20841059	rs4666449	C	T	1150.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:36,45:0.56:81
chr2	20845273	rs2304423	G	A	5617.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:2,199:0.99:201
chr2	20867122	.	G	GGGCGGCGGCGGCGGCGGC	686.73	.	AC=2;AF=1.00;AN=2;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.36;QD=52.83;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	20870579	rs13013489	G	A	1476.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:52,66:0.56:118
chr2	20871190	rs4666457	A	C	8905.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	1/1:0,335:1.00:335
chr2	20884546	rs10171934	A	C	2842.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:99,135:0.58:234
chr2	20884550	rs11693849	C	A	1953.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:140,102:0.42:242
chr2	20884586	rs10182643	G	C	4092.77	.	AC=1;AF=0.500;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	0/1:135,190:0.58:325
chr2	20939706	rs2046325	T	C	7777.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.875;ClippingRankSum=0.000;DB;DP=369;ExcessHet=3.0103;FS=0.414;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.43;ReadPosRankSum=0.224;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:167,196:0.54:363
chr2	20939706	.	TAC	CAT	2944	.	AC=1;AF=0.500;AN=2;BRF=0.42;FR=0.5000;HP=2;HapScore=1;MGOF=1;MMLQ=28;MQ=60.0;NF=111;NR=39;PP=2944;QD=20;SC=AGAATAAACATACACATTTTA;SbPval=0.55;Source=Platypus;TC=288;TCF=212;TCR=76;TR=150;WE=20939716;WS=20939696;set=Platypus	GT:AD:AF:DP	1/0:138,150:0.52:288
chr2	20939708	rs653347	C	T	7777.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.147;ClippingRankSum=0.000;DB;DP=389;ExcessHet=3.0103;FS=1.300;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.31;ReadPosRankSum=0.567;SOR=0.783;set=HC	GT:AD:AF:DP	0/1:178,205:0.54:383
chr2	20989039	rs114193458	C	T	2684.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:184,131:0.42:315
chr2	21224843	rs12713450	G	A	3423.77	.	AC=1;AF=0.500;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	0/1:205,166:0.45:371
chr2	21225281	rs1042034	C	T	1686.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:90,76:0.46:166
chr2	21226218	.	G	GA	212.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.725;ClippingRankSum=0.000;DP=192;ExcessHet=3.0103;FS=6.694;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.30;ReadPosRankSum=2.189;SOR=0.303;set=HC	GT:AD:AF:DP	0/1:132,32:0.20:164
chr2	21227331	rs12720851	G	A	3099.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:113,140:0.55:253
chr2	21227383	rs1800479	C	G	3179.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:128,143:0.53:271
chr2	21229905	rs12720854	T	C	4939.77	.	AC=1;AF=0.500;AN=2;DB;DP=514;set=Intersection	GT:AD:AF:DP	0/1:262,245:0.48:507
chr2	21231524	rs676210	G	A	6395.77	.	AC=1;AF=0.500;AN=2;DB;DP=614;set=Intersection	GT:AD:AF:DP	0/1:297,305:0.51:602
chr2	21232803	rs584542	T	C	8762.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:0,333:1.00:333
chr2	21233972	rs533617	T	C	7715.77	.	AC=1;AF=0.500;AN=2;DB;DP=782;set=Intersection	GT:AD:AF:DP	0/1:397,381:0.49:778
chr2	21235475	rs568413	T	C	5377.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr2	21236482	rs488329	A	G	1271.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	21237544	rs673548	G	A	1123.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:71,50:0.41:121
chr2	21246306	rs12714102	G	C	2497.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:100,115:0.53:215
chr2	21250914	rs679899	G	A	1750.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:131,89:0.40:220
chr2	21252365	rs67556837	GAGGA	G	1542.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.230;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=9.468;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.13;ReadPosRankSum=0.263;SOR=0.100;set=HC	GT:AD:AF:DP	0/1:28,45:0.62:73
chr2	21255166	rs12714224	G	T	123.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:13,6:0.32:19
chr2	21255573	rs10701091	C	CCATCT	3278.73	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr2	21360583	rs312966	A	G	5065.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:2,189:0.99:191
chr2	23862187	rs540290	C	G	11066.77	.	AC=2;AF=1.00;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	1/1:0,408:1.00:408
chr2	23865260	rs642931	T	C	18267.77	.	AC=2;AF=1.00;AN=2;DB;DP=688;set=Intersection	GT:AD:AF:DP	1/1:0,675:1.00:675
chr2	23865908	rs527176	G	C	7614.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.49;SOR=0.775;set=HC	GT:AD:AF:DP	1/1:0,277:1.00:277
chr2	23907211	.	T	TA	63.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.039;ClippingRankSum=0.000;DP=159;ExcessHet=3.0103;FS=3.541;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.42;ReadPosRankSum=0.100;SOR=0.340;set=HC	GT:AD:AF:DP	0/1:124,26:0.17:150
chr2	23919375	rs3795942	C	T	3176.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr2	23925980	rs12466745	T	C	3589.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr2	23926659	rs3795948	T	C	12184.77	.	AC=2;AF=1.00;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	1/1:2,452:1.00:454
chr2	24009163	rs9636434	A	G	6413.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr2	24042550	rs2879639	C	T	1328.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr2	24055058	rs10432637	G	C	20103.77	.	AC=2;AF=1.00;AN=2;DB;DP=751;set=Intersection	GT:AD:AF:DP	1/1:0,738:1.00:738
chr2	24108652	rs7579201	T	C	9333.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:0,355:1.00:355
chr2	24110911	rs34093830	G	GA	1705.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.116;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.26;MQRankSum=0.669;QD=17.06;ReadPosRankSum=-0.177;SOR=0.551;set=HC	GT:AD:AF:DP	1/1:11,89:0.89:100
chr2	24194314	rs1533440	C	T	988.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr2	24246175	rs12989842	C	T	6089.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr2	24246679	rs925228	A	G	4055.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr2	24255862	rs10179142	C	G	4486.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr2	24276736	rs11125393	T	C	4060.77	.	AC=1;AF=0.500;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	0/1:226,199:0.47:425
chr2	24290671	rs61742149	G	A	1613.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:60,75:0.56:135
chr2	24369674	rs11693860	C	T	12998.77	.	AC=2;AF=1.00;AN=2;DB;DP=502;set=Intersection	GT:AD:AF:DP	1/1:0,488:1.00:488
chr2	24384424	rs4665667	T	C	6195.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr2	24387178	rs113322110	G	GC	4515.73	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr2	24388096	rs4665668	G	A	1413.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr2	24390517	rs2288072	G	A	9121.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:0,341:1.00:341
chr2	24395269	rs918802	T	C	1813.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr2	24395294	rs918803	T	C	2756.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr2	24395506	rs889830	T	C	2975.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr2	24398281	rs2042467	T	G	2854.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr2	24398446	rs2042468	A	T	4127.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:1,156:0.99:157
chr2	24402127	rs61193015	C	CAA	5081.73	.	AC=2;AF=1.00;AN=2;DB;DP=118;MQ=60.09;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr2	24432211	rs2303293	C	T	3981.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr2	24432620	rs2303294	A	G	4098.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:1,137:0.99:138
chr2	24432667	rs2303295	C	G	7562.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr2	24440997	rs2551183	A	T	2555.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr2	24475205	rs4450560	T	C	11651.77	.	AC=2;AF=1.00;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	1/1:0,423:1.00:423
chr2	24484150	rs4665680	T	C	2582.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr2	24498839	rs4411652	T	G	656.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.27;SOR=4.712;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	24521493	rs7559133	C	T	4192.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr2	24521766	rs6707600	C	T	1613.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr2	24550867	.	CAA	C,CA	4615.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.038;ClippingRankSum=0.000;DP=342;ExcessHet=3.0103;FS=1.550;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.19;MQRankSum=0.837;QD=14.65;ReadPosRankSum=3.152;SOR=0.526;set=HC	GT:AD:AF:DP	1/2:32,86,197:0.27,0.63:315
chr2	24881666	rs17046446	C	A	2230.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:109,104:0.49:213
chr2	24896389	rs4665712	T	G	957.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:61,50:0.45:111
chr2	24905927	rs11125744	G	C	7824.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr2	24929851	rs3731628	A	T	4337.77	.	AC=1;AF=0.500;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	0/1:211,198:0.48:409
chr2	24933689	rs7593430	A	C	1314.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr2	24949602	rs41281517	A	C	1280.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:68,66:0.49:134
chr2	24952712	rs375818965	CT	C	985.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.048;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.62;ReadPosRankSum=-0.238;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:70,79:0.53:149
chr2	24952740	rs11439247	C	CT	5249.73	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr2	24962252	rs3820933	G	A	2539.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:160,119:0.43:279
chr2	24974945	rs11125763	T	G	4012.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr2	24975122	rs3731630	T	C	337.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:14,16:0.53:30
chr2	24985719	rs12612839	T	G	1884.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:83,88:0.51:171
chr2	25022442	rs34475213	TA	T	179.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.319;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=1.690;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.45;ReadPosRankSum=0.219;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:15,18:0.55:33
chr2	25037042	rs1003064	G	A	679.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:21,26:0.55:47
chr2	25039804	rs2099505	G	A	1098.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr2	25040423	rs10178420	G	A	3564.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr2	25046090	rs1127568	T	C	891.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:53,46:0.46:99
chr2	25046355	rs4665273	T	C	619.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.852;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=1.191;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.91;ReadPosRankSum=0.464;SOR=1.091;set=HC	GT:AD:AF:DP	0/1:24,24:0.50:48
chr2	25046361	rs5829941	A	AT	178.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.339;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=1.527;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.59;ReadPosRankSum=1.554;SOR=0.385;set=HC	GT:AD:AF:DP	0/1:14,18:0.56:32
chr2	25047408	rs7604576	A	G	2110.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:146,104:0.42:250
chr2	25048847	rs2289090	A	G	1828.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:97,92:0.49:189
chr2	25050336	rs2289091	G	A	1417.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:74,69:0.48:143
chr2	25050913	.	C	T	3318.77	.	AC=1;AF=0.500;AN=2;DP=389;set=Intersection	GT:AD:AF:DP	0/1:214,168:0.44:382
chr2	25050977	rs7566416	T	C	2354.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:133,108:0.45:241
chr2	25053828	rs1056074	T	C	1042.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:40,49:0.55:89
chr2	25054315	rs80328088	G	A	96.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.361;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=4.150;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.44;ReadPosRankSum=0.502;SOR=0.074;set=HC	GT:AD:AF:DP	0/1:8,5:0.38:13
chr2	25057298	rs2278486	C	G	605.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.101;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=9.354;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.37;ReadPosRankSum=0.313;SOR=2.111;set=HC	GT:AD:AF:DP	0/1:9,28:0.76:37
chr2	25061270	rs145368937	GGGGTGGGGT	G	2086.73	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:1,50:0.98:51
chr2	25061810	rs377483153	AT	A	417.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.215;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=3.498;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.468;QD=4.14;ReadPosRankSum=-0.439;SOR=0.362;set=HC	GT:AD:AF:DP	0/1:52,49:0.49:101
chr2	25063428	rs78927940	GG	TC	4131.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;JOINED;set=Intersection	GT:AD:AF:DP	0/1:110,107:0.49:217
chr2	25065406	rs77746285	C	T	738.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:45,36:0.44:81
chr2	25100902	rs2033656	C	G	1511.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:56,67:0.54:123
chr2	25141538	rs11676272	A	G	11930.77	.	AC=1;AF=0.500;AN=2;DB;DP=1187;set=Intersection	GT:AD:AF:DP	0/1:616,565:0.48:1181
chr2	25190127	rs6749438	G	A	1712.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:98,83:0.46:181
chr2	25194586	rs7593743	G	A	1902.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:120,90:0.43:210
chr2	25194741	rs7593864	G	A	18791.77	.	AC=2;AF=1.00;AN=2;DB;DP=713;set=Intersection	GT:AD:AF:DP	1/1:0,709:1.00:709
chr2	25313988	rs11414211	T	TG	581.73	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:31,22:0.42:53
chr2	25314186	rs2918630	T	C	8239.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.28;SOR=0.790;set=HC	GT:AD:AF:DP	1/1:0,302:1.00:302
chr2	25316045	rs10495751	T	C	1050.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:44,53:0.55:97
chr2	25326479	.	A	G	2283.77	.	AC=1;AF=0.500;AN=2;DP=285;set=Intersection	GT:AD:AF:DP	0/1:163,117:0.42:280
chr2	25344464	rs2276597	G	A	809.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:32,34:0.52:66
chr2	25360196	rs116074763	G	A	2957.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:139,140:0.50:279
chr2	25362194	rs6718083	G	A	2387.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr2	25368005	rs10188516	G	A	2534.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:1,79:0.99:80
chr2	25368030	rs10180231	T	C	1890.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:1,55:0.98:56
chr2	25374912	rs17046887	G	A	3694.77	.	AC=1;AF=0.500;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	0/1:238,181:0.43:419
chr2	25377176	rs2164808	T	C	11108.77	.	AC=2;AF=1.00;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	1/1:0,425:1.00:425
chr2	25377329	rs2118404	C	T	1368.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr2	25384456	rs10654394	C	CGCCGCTGCT	6741.73	.	AC=1;AF=0.500;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	0/1:142,169:0.54:311
chr2	25384705	rs6713396	T	C	494.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:26,24:0.48:50
chr2	25458546	rs2304429	C	T	6878.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr2	25463483	rs2289195	G	A	5431.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr2	25466888	rs2289093	G	T	3904.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:1,136:0.99:137
chr2	25469913	rs2276599	C	T	10689.77	.	AC=2;AF=1.00;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	1/1:0,402:1.00:402
chr2	25472784	rs11681447	C	T	2093.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr2	25551692	rs12995245	C	T	981.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr2	25602142	rs2304426	G	A	12839.77	.	AC=2;AF=1.00;AN=2;DB;DP=476;set=Intersection	GT:AD:AF:DP	1/1:0,471:1.00:471
chr2	25602310	rs2304427	C	T	5235.77	.	AC=1;AF=0.500;AN=2;DB;DP=601;set=Intersection	GT:AD:AF:DP	0/1:329,258:0.44:587
chr2	25610141	.	G	C	679.77	.	AC=1;AF=0.500;AN=2;DP=50;set=Intersection	GT:AD:AF:DP	0/1:19,31:0.62:50
chr2	25610287	rs66917623	G	T	1130.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:61,56:0.48:117
chr2	25650631	rs34648410	A	G	2715.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:108,116:0.52:224
chr2	25650668	rs3832082	C	CT	1425.73	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:54,57:0.51:111
chr2	25656880	rs1395949	C	G	7738.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr2	25656889	rs11451153	G	GT	105.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.109;ClippingRankSum=0.000;DB;DP=200;ExcessHet=3.0103;FS=2.022;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.66;ReadPosRankSum=-1.089;SOR=0.441;set=HC	GT:AD:AF:DP	0/1:131,30:0.19:161
chr2	25875401	rs137982132	T	TAA	2103.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.083;ClippingRankSum=0.000;DB;DP=460;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=0.000;QD=4.92;ReadPosRankSum=0.998;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:228,200:0.47:428
chr2	26082057	rs13422450	T	C	1152.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	26161226	rs11388254	C	CA	1474.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.451;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=0.956;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.34;ReadPosRankSum=2.479;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:28,102:0.78:130
chr2	26203678	rs1465878	T	C	17396.77	.	AC=2;AF=1.00;AN=2;DB;DP=647;set=Intersection	GT:AD:AF:DP	1/1:0,638:1.00:638
chr2	26321526	rs11678157	T	C	2881.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr2	26350136	rs2289022	G	T	2628.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr2	26357748	rs2243834	G	T	8829.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:1,304:1.00:305
chr2	26399214	rs4665830	G	A	19896.77	.	AC=2;AF=1.00;AN=2;DB;DP=739;set=Intersection	GT:AD:AF:DP	1/1:0,731:1.00:731
chr2	26405985	rs10779956	A	G	2206.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr2	26408064	rs4665833	T	C	972.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr2	26415429	rs5001914	A	G	1878.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr2	26416301	rs7582341	A	G	3289.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr2	26417533	rs1865324	C	A	524.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	26420708	rs13387855	T	G	4045.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr2	26420809	rs2289019	G	C	878.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr2	26454996	rs7593175	A	G	2016.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr2	26477125	rs147970487	G	GACT	3639.73	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr2	26484080	rs70950178	A	AC	102.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.707;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.67;ReadPosRankSum=-0.255;SOR=1.105;set=HC	GT:AD:AF:DP	0/1:20,8:0.29:28
chr2	26500101	.	CTTTT	C	131.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.509;ClippingRankSum=0.000;DP=37;ExcessHet=3.0103;FS=3.771;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=1.622;QD=4.88;ReadPosRankSum=1.196;SOR=1.034;set=HC	GT:AD:AF:DP	0/1:19,8:0.30:27
chr2	26512957	rs1056471	G	C	1093.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr2	26532491	rs2007556	G	T	3192.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr2	26532735	rs3856397	G	A	3379.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr2	26533023	rs3851967	C	T	12074.77	.	AC=2;AF=1.00;AN=2;DB;DP=455;set=Intersection	GT:AD:AF:DP	1/1:0,450:1.00:450
chr2	26534801	rs7568529	G	A	4115.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr2	26536694	rs2052937	C	T	7695.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr2	26537499	rs10187359	A	C	11739.77	.	AC=2;AF=1.00;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	1/1:0,422:1.00:422
chr2	26606347	rs13030294	T	A	1297.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr2	26607992	rs934280	T	C	7787.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr2	26625042	rs13003230	C	A	6727.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr2	26647277	rs7423300	T	G	2253.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr2	26652671	rs4356622	A	G	2710.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr2	26653457	rs4450561	G	A	19019.77	.	AC=2;AF=1.00;AN=2;DB;DP=713;set=Intersection	GT:AD:AF:DP	1/1:0,709:1.00:709
chr2	26663187	rs138497746	T	TTG,TTGTG	2410.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.864;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.55;MQRankSum=0.000;QD=40.18;ReadPosRankSum=-0.131;SOR=1.112;set=HC	GT:AD:AF:DP	1/2:1,11,48:0.18,0.80:60
chr2	26663215	rs56218945	A	G	1595.03	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:7,61:0.90:68
chr2	26667615	rs939820	T	C	4215.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr2	26671092	rs34461558	C	CA	1396.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.205;ClippingRankSum=0.000;DB;DP=203;ExcessHet=3.0103;FS=10.059;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.669;QD=8.22;ReadPosRankSum=2.251;SOR=0.169;set=HC	GT:AD:AF:DP	0/1:57,113:0.66:170
chr2	26671544	rs4072407	A	G	4924.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr2	26676322	rs1402962	A	G	8201.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.89;SOR=0.825;set=HC	GT:AD:AF:DP	1/1:0,305:1.00:305
chr2	26677810	rs2280516	A	G	1795.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr2	26679394	rs1054737	G	A	3012.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:115,141:0.55:256
chr2	26684497	rs2280512	C	T	4448.77	.	AC=1;AF=0.500;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	0/1:170,206:0.55:376
chr2	26689412	rs138481203	C	T	770.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:29,34:0.54:63
chr2	26689911	rs200861730	G	GT	1659.73	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:107,79:0.42:186
chr2	26689997	rs149236286	G	A	7215.77	.	AC=1;AF=0.500;AN=2;DB;DP=721;set=Intersection	GT:AD:AF:DP	0/1:368,351:0.49:719
chr2	26695338	rs41286013	C	T	5745.77	.	AC=1;AF=0.500;AN=2;DB;DP=554;set=Intersection	GT:AD:AF:DP	0/1:274,273:0.50:547
chr2	26695354	rs41286015	C	T	6068.77	.	AC=1;AF=0.500;AN=2;DB;DP=577;set=Intersection	GT:AD:AF:DP	0/1:278,286:0.51:564
chr2	26697422	rs80356574	C	G	3016.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:151,132:0.47:283
chr2	26697480	rs80356573	C	T	5915.77	.	AC=1;AF=0.500;AN=2;DB;DP=557;set=Intersection	GT:AD:AF:DP	0/1:275,280:0.50:555
chr2	26698682	rs6712188	G	T	1428.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:77,64:0.45:141
chr2	26699126	rs4335905	C	G	6207.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr2	26699855	rs2272069	G	C	4080.77	.	AC=1;AF=0.500;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	0/1:205,185:0.47:390
chr2	26700099	rs80356570	G	A	2302.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:128,113:0.47:241
chr2	26700248	rs56284635	C	T	2829.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:130,139:0.52:269
chr2	26700309	rs80356592	C	T	3136.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:110,151:0.58:261
chr2	26700700	rs4665855	G	A	3941.77	.	AC=1;AF=0.500;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	0/1:187,179:0.49:366
chr2	26700819	rs55806442	TGG	T	2716.73	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr2	26702057	rs10714255	GT	G	511.73	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:22,19:0.46:41
chr2	26702082	rs61323419	G	A	881.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:28,40:0.59:68
chr2	26702508	rs72853741	G	A	3318.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:159,164:0.51:323
chr2	26703267	rs72853742	G	C	1181.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:39,49:0.56:88
chr2	26724725	rs6547079	T	G	2197.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr2	26726752	rs884390	G	A	15009.77	.	AC=2;AF=1.00;AN=2;DB;DP=552;set=Intersection	GT:AD:AF:DP	1/1:0,548:1.00:548
chr2	26733500	rs939817	C	T	4649.77	.	AC=1;AF=0.500;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	0/1:172,208:0.55:380
chr2	26739423	rs11687696	T	C	10095.77	.	AC=2;AF=1.00;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	1/1:0,392:1.00:392
chr2	26750557	rs10865425	T	C	2119.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr2	26750645	rs1879760	G	A	3539.77	.	AC=1;AF=0.500;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	0/1:163,166:0.50:329
chr2	26785682	.	G	C	2813.77	.	AC=1;AF=0.500;AN=2;DP=259;set=Intersection	GT:AD:AF:DP	0/1:117,137:0.54:254
chr2	26795217	rs59491712	GT	G	505.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.407;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.37;ReadPosRankSum=-0.302;SOR=1.230;set=HC	GT:AD:AF:DP	0/1:15,39:0.72:54
chr2	26795235	rs13004284	C	T	675.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:26,28:0.52:54
chr2	26798893	rs13002673	A	T	17559.77	.	AC=1;AF=0.500;AN=2;DB;DP=1826;set=Intersection	GT:AD:AF:DP	0/1:940,872:0.48:1812
chr2	26799031	rs2272464	G	A	4190.77	.	AC=1;AF=0.500;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	0/1:220,185:0.46:405
chr2	26801556	rs145709956	AT	A	1319.73	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:59,41:0.41:100
chr2	26801795	rs75930789	C	T	3986.77	.	AC=1;AF=0.500;AN=2;DB;DP=484;set=Intersection	GT:AD:AF:DP	0/1:265,206:0.44:471
chr2	26802392	rs2272467	A	T	2169.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:72,93:0.56:165
chr2	26804122	rs744539	T	G	5823.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr2	26804143	rs744540	T	C	7525.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr2	26804218	rs935171	G	A	15326.77	.	AC=2;AF=1.00;AN=2;DB;DP=587;set=Intersection	GT:AD:AF:DP	1/1:2,583:1.00:585
chr2	26804247	rs935172	T	C	16468.77	.	AC=2;AF=1.00;AN=2;DB;DP=627;set=Intersection	GT:AD:AF:DP	1/1:0,624:1.00:624
chr2	26951449	rs1663002	G	A	5713.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr2	26997031	rs13007156	G	A	4253.77	.	AC=1;AF=0.500;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	0/1:186,198:0.52:384
chr2	27014980	rs12992046	T	C	2654.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:190,130:0.41:320
chr2	27015118	rs13014800	G	A	812.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:71,39:0.35:110
chr2	27015141	rs35344721	G	GC	773.73	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:48,30:0.38:78
chr2	27015903	rs2289017	T	C	1360.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:74,60:0.45:134
chr2	27015969	rs2289018	G	A	2819.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:156,144:0.48:300
chr2	27154421	rs72804841	G	T	695.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:43,34:0.44:77
chr2	27157396	rs920437	G	A	304.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.16;ReadPosRankSum=-0.845;SOR=0.327;set=HC	GT:AD:AF:DP	0/1:15,15:0.50:30
chr2	27157400	rs920436	A	G	1087.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.09;SOR=3.981;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	27163044	rs3739085	T	C	1318.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:116,71:0.38:187
chr2	27164806	rs3820823	G	A	1196.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:59,57:0.49:116
chr2	27167784	rs3739088	C	T	687.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:29,28:0.49:57
chr2	27169637	rs3835821	TC	T	2326.73	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:64,72:0.53:136
chr2	27169842	rs11126784	C	A	4481.77	.	AC=1;AF=0.500;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	0/1:222,209:0.48:431
chr2	27246285	rs10865456	C	T	9806.77	.	AC=2;AF=1.00;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	1/1:0,358:1.00:358
chr2	27249245	rs3754733	A	G	3497.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:158,166:0.51:324
chr2	27259794	rs13021112	G	A	827.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:50,36:0.42:86
chr2	27260469	rs1124649	G	A	6427.77	.	AC=1;AF=0.500;AN=2;DB;DP=566;set=Intersection	GT:AD:AF:DP	0/1:262,296:0.53:558
chr2	27261329	rs11690454	A	G	3760.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr2	27262763	rs146244277	GGGA	G	13859.73	.	AC=2;AF=1.00;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr2	27263122	rs1866654	T	C	6032.77	.	AC=1;AF=0.500;AN=2;DB;DP=581;set=Intersection	GT:AD:AF:DP	0/1:290,277:0.49:567
chr2	27276202	rs3806520	G	A	1846.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:73,81:0.53:154
chr2	27279416	rs2384570	A	G	5737.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:3,221:0.99:224
chr2	27280092	rs6711384	T	A	1370.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:63,60:0.49:123
chr2	27280127	rs6721395	G	A	2147.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:101,95:0.48:196
chr2	27290525	rs11681145	A	G	5241.77	.	AC=1;AF=0.500;AN=2;DB;DP=583;set=Intersection	GT:AD:AF:DP	0/1:314,267:0.46:581
chr2	27291661	rs7575465	G	A	715.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:32,29:0.48:61
chr2	27292651	rs10865461	T	C	1124.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:53,48:0.48:101
chr2	27293150	rs1053609	G	T	3782.77	.	AC=1;AF=0.500;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	0/1:178,174:0.49:352
chr2	27302165	rs2289360	T	C	2593.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:121,127:0.51:248
chr2	27303755	rs2736976	A	G	6928.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr2	27307769	rs2304682	G	C	2901.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:193,146:0.43:339
chr2	27315252	rs2304681	G	A	5590.77	.	AC=1;AF=0.500;AN=2;DB;DP=592;set=Intersection	GT:AD:AF:DP	0/1:313,279:0.47:592
chr2	27319723	rs62128661	C	T	1972.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:99,97:0.49:196
chr2	27319826	rs9677784	A	G	1433.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr2	27323385	rs1131375	C	T	1878.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:85,89:0.51:174
chr2	27323468	rs4665371	A	C	4164.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr2	27324036	rs1057394	G	A	987.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:25,38:0.60:63
chr2	27324340	.	G	A	2180	.	AC=1;AF=0.500;AN=2;FR=0.5000;HP=4;HapScore=2;MMLQ=29;NF=24;NR=39;SC=CTCTGGGCCCGGGGGCATCTC;SbPval=0.09;Source=Platypus;TCF=72;TR=63;WS=27324330;set=Platypus	GT:AD:AF:DP	1/0:74,63:0.46:137
chr2	27324354	.	C	T	2180	.	AC=1;AF=0.500;AN=2;BRF=0.32;FR=0.5000;HP=2;HapScore=2;MGOF=9;MMLQ=25;MQ=55.63;NF=14;NR=29;PP=2180;QD=51.5063072685;SC=GCATCTCCTTCAGCCTCTGCC;SbPval=0.03;Source=Platypus;TC=147;TCF=81;TCR=66;TR=43;WE=27324362;WS=27324330;set=Platypus	GT:AD:AF:DP	1/0:104,43:0.29:147
chr2	27324669	rs61753362	C	T	5657.77	.	AC=1;AF=0.500;AN=2;DB;DP=475;set=Intersection	GT:AD:AF:DP	0/1:217,252:0.54:469
chr2	27324724	rs2384571	G	C	5213.77	.	AC=1;AF=0.500;AN=2;DB;DP=569;set=Intersection	GT:AD:AF:DP	0/1:310,256:0.45:566
chr2	27324751	rs2384572	G	T	5883.77	.	AC=1;AF=0.500;AN=2;DB;DP=640;set=Intersection	GT:AD:AF:DP	0/1:349,285:0.45:634
chr2	27351279	rs1866561	G	A	1375.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:74,60:0.45:134
chr2	27351948	rs6715286	T	G	14413.77	.	AC=2;AF=1.00;AN=2;DB;DP=530;set=Intersection	GT:AD:AF:DP	1/1:0,523:1.00:523
chr2	27352097	.	G	T	1924.77	.	AC=1;AF=0.500;AN=2;DP=202;set=Intersection	GT:AD:AF:DP	0/1:109,90:0.45:199
chr2	27353507	rs2304678	G	C	6107.77	.	AC=1;AF=0.500;AN=2;DB;DP=625;set=Intersection	GT:AD:AF:DP	0/1:335,282:0.46:617
chr2	27354173	rs11126874	C	A	1806.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr2	27354971	rs11695930	C	T	2455.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:187,124:0.40:311
chr2	27355454	rs4665948	A	C	1972.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr2	27355991	rs2289358	G	T	2647.77	.	AC=1;AF=0.500;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	0/1:181,133:0.42:314
chr2	27356278	rs2289359	T	C	2915.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:119,131:0.52:250
chr2	27424496	rs1006898	G	A	4572.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr2	27424636	rs1395	G	A	6164.77	.	AC=1;AF=0.500;AN=2;DB;DP=495;set=Intersection	GT:AD:AF:DP	0/1:202,270:0.57:472
chr2	27426362	rs2580761	G	A	1036.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:33,40:0.55:73
chr2	27426514	rs1275521	G	C	12409.77	.	AC=2;AF=1.00;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	1/1:0,447:1.00:447
chr2	27428147	rs1298361	A	G	5244.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr2	27428295	rs1275524	A	G	33719.77	.	AC=2;AF=1.00;AN=2;DB;DP=1287;set=Intersection	GT:AD:AF:DP	1/1:0,1274:1.00:1274
chr2	27428702	rs1275525	A	C	1443.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.46;SOR=4.450;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr2	27428815	rs1275526	C	G	10986.77	.	AC=2;AF=1.00;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	1/1:0,404:1.00:404
chr2	27428877	rs1275527	C	G	14553.77	.	AC=2;AF=1.00;AN=2;DB;DP=550;set=Intersection	GT:AD:AF:DP	1/1:0,543:1.00:543
chr2	27435250	rs1275533	A	G	6732.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr2	27435374	rs11608	G	A	2314.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:70,106:0.60:176
chr2	27438710	rs11126918	G	A	1425.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:57,58:0.50:115
chr2	27440785	rs1275536	C	T	27386.77	.	AC=2;AF=1.00;AN=2;DB;DP=1003;set=Intersection	GT:AD:AF:DP	1/1:0,991:1.00:991
chr2	27445315	rs3214689	G	GT	3418.73	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:141,134:0.49:275
chr2	27449293	rs7593448	C	G	2152.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:91,93:0.51:184
chr2	27457210	rs79244431	T	C	544.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:30,26:0.46:56
chr2	27460968	rs1141313	A	G	9104.77	.	AC=1;AF=0.500;AN=2;DB;DP=1010;set=Intersection	GT:AD:AF:DP	0/1:543,459:0.46:1002
chr2	27462076	rs3739092	C	T	5221.77	.	AC=1;AF=0.500;AN=2;DB;DP=468;set=Intersection	GT:AD:AF:DP	0/1:220,237:0.52:457
chr2	27462405	rs2014252	T	A	1315.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:38,55:0.59:93
chr2	27463091	.	G	GA	368.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.306;ClippingRankSum=0.000;DP=387;ExcessHet=3.0103;FS=7.652;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.04;ReadPosRankSum=-1.644;SOR=0.213;set=HC	GT:AD:AF:DP	0/1:282,73:0.21:355
chr2	27481460	rs58965570	C	T	584.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:37,25:0.40:62
chr2	27497815	rs60631624	T	G	289.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:10,13:0.57:23
chr2	27499791	.	CTT	C	166.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.793;ClippingRankSum=0.000;DP=112;ExcessHet=3.0103;FS=1.209;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.47;ReadPosRankSum=1.737;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:33,15:0.31:48
chr2	27505782	rs62130709	C	T	3050.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:157,146:0.48:303
chr2	27522543	rs141577308	C	CCTAT,CCTATCTAT	4294.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.567;ClippingRankSum=0.000;DB;DP=237;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.05;MQRankSum=0.000;QD=39.40;ReadPosRankSum=-0.473;SOR=0.671;set=HC	GT:AD:AF:DP	1/2:5,61,43:0.56,0.39:109
chr2	27528692	rs4665963	T	C	1324.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:84,63:0.43:147
chr2	27532870	rs62130714	A	G	2375.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.005;ClippingRankSum=0.000;DB;DP=291;ExcessHet=3.0103;FS=1.405;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.16;ReadPosRankSum=0.885;SOR=0.607;set=HC	GT:AD:AF:DP	0/1:163,128:0.44:291
chr2	27535311	rs5830041	T	TG	19885.73	.	AC=2;AF=1.00;AN=2;DB;DP=570;set=Intersection	GT:AD:AF:DP	1/1:0,561:1.00:561
chr2	27549833	rs35568684	CA	C	525.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.668;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=4.303;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.10;ReadPosRankSum=-0.218;SOR=1.262;set=HC	GT:AD:AF:DP	0/1:58,45:0.44:103
chr2	27550967	rs1049817	A	G	1804.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:102,89:0.47:191
chr2	27556721	rs3739095	G	A	2350.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:123,113:0.48:236
chr2	27558252	rs11684134	A	G	1772.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:94,83:0.47:177
chr2	27566520	rs11689803	T	A	1373.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:68,61:0.47:129
chr2	27587922	rs35891906	CT	C	74.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.803;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=1.697;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.58;ReadPosRankSum=-3.202;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:18,11:0.38:29
chr2	27589810	rs2280737	T	C	5815.77	.	AC=1;AF=0.500;AN=2;DB;DP=634;set=Intersection	GT:AD:AF:DP	0/1:333,291:0.47:624
chr2	27591804	rs80051818	T	C	1321.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:52,53:0.50:105
chr2	27592423	rs7602534	C	T	3930.77	.	AC=1;AF=0.500;AN=2;DB;DP=468;set=Intersection	GT:AD:AF:DP	0/1:263,199:0.43:462
chr2	27595756	rs1528533	G	C	236.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:23,11:0.32:34
chr2	27597805	rs3215365	CTT	C	1779.73	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:38,46:0.55:84
chr2	27598097	rs4665972	T	C	1232.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:54,54:0.50:108
chr2	27599132	rs12475426	G	A	6323.77	.	AC=1;AF=0.500;AN=2;DB;DP=600;set=Intersection	GT:AD:AF:DP	0/1:300,296:0.50:596
chr2	27600239	rs13472	G	A	3845.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.151;ClippingRankSum=0.000;DB;DP=467;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=1.143;QD=8.29;ReadPosRankSum=1.427;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:262,202:0.44:464
chr2	27606098	rs2384629	A	G	1887.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr2	27656822	rs3214499	G	GA	3196.73	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:89,102:0.53:191
chr2	27659491	rs780102	T	C	1841.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:101,92:0.48:193
chr2	27659832	.	C	CT	363.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.203;ClippingRankSum=0.000;DP=413;ExcessHet=3.0103;FS=0.992;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=1.883;QD=0.92;ReadPosRankSum=-1.277;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:317,77:0.20:394
chr2	27663215	rs1260341	T	A	1412.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:57,67:0.54:124
chr2	27663416	rs1260342	G	T	5576.77	.	AC=1;AF=0.500;AN=2;DB;DP=496;set=Intersection	GT:AD:AF:DP	0/1:226,256:0.53:482
chr2	27665361	rs780112	C	G	4231.77	.	AC=1;AF=0.500;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	0/1:216,211:0.49:427
chr2	27667297	rs4803	A	G	940.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:47,46:0.49:93
chr2	27667520	rs10635082	T	TTTTG	828.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.844;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=0.828;QD=23.68;ReadPosRankSum=-0.939;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:13,22:0.63:35
chr2	27669341	rs11333597	AT	A	2099.73	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:102,71:0.41:173
chr2	27669365	rs11430923	G	GT	559.73	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:49,40:0.45:89
chr2	27670307	rs11126999	G	A	3591.77	.	AC=1;AF=0.500;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	0/1:192,175:0.48:367
chr2	27676287	rs56076827	A	T	3687.77	.	AC=1;AF=0.500;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	0/1:168,176:0.51:344
chr2	27677691	rs780104	G	A	373.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:22,16:0.42:38
chr2	27681598	rs780106	A	C	516.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:27,25:0.48:52
chr2	27684734	rs780107	A	G	1808.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:86,81:0.49:167
chr2	27685388	rs780110	G	A	2541.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:74,101:0.58:175
chr2	27688601	rs1647276	C	T	2457.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:122,116:0.49:238
chr2	27706640	rs2272417	T	C	3891.77	.	AC=1;AF=0.500;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	0/1:183,173:0.49:356
chr2	27708007	.	T	TA	140.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.832;ClippingRankSum=0.000;DP=320;ExcessHet=3.0103;FS=2.279;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=2.802;QD=0.57;ReadPosRankSum=-0.134;SOR=0.479;set=HC	GT:AD:AF:DP	0/1:206,43:0.17:249
chr2	27715207	rs8395	T	A	2114.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:85,92:0.52:177
chr2	27715416	rs2303369	C	T	3655.77	.	AC=1;AF=0.500;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	0/1:223,177:0.44:400
chr2	27716494	rs704795	G	A	622.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:14,24:0.63:38
chr2	27721971	rs813592	T	C	1869.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:90,89:0.50:179
chr2	27722416	rs1260320	G	A	1739.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:91,84:0.48:175
chr2	27728777	rs2293572	C	G	1425.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:65,70:0.52:135
chr2	27729480	rs2293571	G	A	4831.77	.	AC=1;AF=0.500;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	0/1:212,217:0.51:429
chr2	27730940	rs1260326	T	C	2506.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:141,123:0.47:264
chr2	27801281	rs199963644	T	C	7217.77	.	AC=1;AF=0.500;AN=2;DB;DP=705;set=Intersection	GT:AD:AF:DP	0/1:347,343:0.50:690
chr2	27801403	rs1919125	C	G	13906.77	.	AC=1;AF=0.500;AN=2;DB;DP=825;set=Intersection	GT:AD:AF:DP	0/1:444,375:0.46:819
chr2	27801418	rs1919126	C	A	14296.77	.	AC=1;AF=0.500;AN=2;DB;DP=837;set=Intersection	GT:AD:AF:DP	0/1:441,391:0.47:832
chr2	27801493	rs1919127	T	C	6288.77	.	AC=1;AF=0.500;AN=2;DB;DP=724;set=Intersection	GT:AD:AF:DP	0/1:402,316:0.44:718
chr2	27801759	rs1919128	A	G	6864.77	.	AC=1;AF=0.500;AN=2;DB;DP=702;set=Intersection	GT:AD:AF:DP	0/1:365,323:0.47:688
chr2	27804432	rs28381983	T	C	8770.77	.	AC=1;AF=0.500;AN=2;DB;DP=757;set=Intersection	GT:AD:AF:DP	0/1:338,383:0.53:721
chr2	27822721	rs67556120	TAGGCAG	T	1048.73	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:30,28:0.48:58
chr2	27830990	rs6547734	G	T	1520.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:51,67:0.57:118
chr2	27838058	rs11127071	C	A	2957.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:106,139:0.57:245
chr2	27839107	rs6737921	T	C	4204.77	.	AC=1;AF=0.500;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	0/1:187,202:0.52:389
chr2	27851120	rs12615690	T	C	496.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:14,18:0.56:32
chr2	27851918	rs3749147	G	A	1726.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:68,77:0.53:145
chr2	27852117	rs60089768	A	AGGTCTT	3211.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:119,85:0.42:204
chr2	27852118	rs58737572	A	C	3220.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:119,82:0.41:201
chr2	27852637	rs6547738	A	G	981.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:28,36:0.56:64
chr2	27854524	rs34502053	G	A	1288.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:34,51:0.60:85
chr2	27857992	rs4666009	T	A	6491.77	.	AC=1;AF=0.500;AN=2;DB;DP=612;set=Intersection	GT:AD:AF:DP	0/1:286,314:0.52:600
chr2	27858167	.	C	CTTTTTTTTT	655.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.942;ClippingRankSum=0.000;DP=190;ExcessHet=3.0103;FS=12.491;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=2.092;QD=6.76;ReadPosRankSum=-2.042;SOR=0.124;set=HC	GT:AD:AF:DP	0/1:72,25:0.26:97
chr2	27861707	rs11692692	G	A	551.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:12,25:0.68:37
chr2	27884878	rs1569152	C	T	1196.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr2	27887034	rs9678851	C	A	5844.77	.	AC=1;AF=0.500;AN=2;DB;DP=541;set=Intersection	GT:AD:AF:DP	0/1:261,275:0.51:536
chr2	27892023	rs2272406	A	T	1088.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:54,45:0.45:99
chr2	27910706	rs13023094	A	C	1041.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:42,49:0.54:91
chr2	27994597	rs34796799	G	T	1280.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:85,64:0.43:149
chr2	27995781	rs3736594	A	C	814.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	28066122	rs74446114	T	C	2365.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:89,108:0.55:197
chr2	28268467	rs6738887	C	T	480.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	28464435	rs6737817	T	C	1210.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr2	28615812	rs72195155	GGA	G	383.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.286;ClippingRankSum=0.000;DB;DP=263;ExcessHet=3.0103;FS=1.767;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=2.315;QD=2.02;ReadPosRankSum=-1.534;SOR=0.468;set=HC	GT:AD:AF:DP	0/1:161,29:0.15:190
chr2	28718897	rs4665423	A	G	6180.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr2	28748346	rs4666083	T	C	45.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.166;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=4.393;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.16;ReadPosRankSum=-0.728;SOR=0.061;set=HC	GT:AD:AF:DP	0/1:7,4:0.36:11
chr2	28748857	rs4666085	T	C	11170.77	.	AC=2;AF=1.00;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	1/1:0,410:1.00:410
chr2	28748916	rs10181687	A	C	2737.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:166,134:0.45:300
chr2	28752498	rs6728486	T	C	8286.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr2	28752555	rs4473343	T	C	13253.77	.	AC=2;AF=1.00;AN=2;DB;DP=493;set=Intersection	GT:AD:AF:DP	1/1:0,490:1.00:490
chr2	28752727	rs6710800	C	G	5322.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr2	28752741	rs6725577	A	G	4587.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr2	28761257	rs7589169	A	G	2584.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:2,97:0.98:99
chr2	28761282	rs7589254	A	G	1719.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr2	28763374	rs11127162	G	T	1906.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:113,92:0.45:205
chr2	28771452	rs56019402	CTA	C	2829.73	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:4,84:0.95:88
chr2	28771624	rs11680168	T	G	6614.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr2	28771897	rs11680304	T	C	311.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:12,16:0.57:28
chr2	28785754	rs7560628	G	C	1196.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr2	28785768	rs12999555	A	G	769.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:22,30:0.58:52
chr2	28788428	rs34237604	AG	A	268.73	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:12,10:0.45:22
chr2	28789643	rs10186460	T	C	10588.77	.	AC=1;AF=0.500;AN=2;DB;DP=1090;set=Intersection	GT:AD:AF:DP	0/1:570,516:0.48:1086
chr2	28795893	rs13005799	G	A	1376.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.89;SOR=4.548;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	28795899	rs13007288	C	T	1488.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.35;SOR=3.383;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr2	28795962	rs13005854	G	A	2084.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr2	28800894	rs877832	C	T	1935.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr2	28802355	rs12466173	G	C	3757.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:2,135:0.99:137
chr2	28804835	rs5830085	GA	G	2143.73	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:17,135:0.89:152
chr2	28805410	rs4666102	C	A	3109.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr2	28808539	rs13393932	G	A	1151.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	28812285	rs12468715	T	C	3760.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:2,125:0.98:127
chr2	28812982	rs4666105	C	T	6308.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr2	28814033	rs11681826	A	G	25399.77	.	AC=2;AF=1.00;AN=2;DB;DP=979;set=Intersection	GT:AD:AF:DP	1/1:5,968:0.99:973
chr2	28814548	rs12464271	A	T	9048.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:2,338:0.99:340
chr2	28814683	rs11127176	T	C	4932.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:2,189:0.99:191
chr2	28816425	rs10176136	T	C	1010.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	28816814	rs11462230	C	CTT,CTTT	6456.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.787;ClippingRankSum=0.000;DB;DP=285;ExcessHet=3.0103;FS=1.767;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.34;MQRankSum=0.344;QD=25.62;ReadPosRankSum=1.107;SOR=0.318;set=HC	GT:AD:AF:DP	1/2:17,85,150:0.34,0.60:252
chr2	28816948	rs4665429	C	T	20873.77	.	AC=2;AF=1.00;AN=2;DB;DP=803;set=Intersection	GT:AD:AF:DP	1/1:0,796:1.00:796
chr2	28817071	rs79817361	A	G	1649.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:65,72:0.53:137
chr2	28825724	rs62131028	A	T	6021.77	.	AC=1;AF=0.500;AN=2;DB;DP=632;set=Intersection	GT:AD:AF:DP	0/1:318,304:0.49:622
chr2	28849435	rs10186023	T	C	3365.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:1,114:0.99:115
chr2	28849473	rs899149	T	C	1455.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:1,56:0.98:57
chr2	28855088	rs11300009	CT	C	135.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.414;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=1.970;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=3.167;QD=1.12;ReadPosRankSum=-0.363;SOR=0.471;set=HC	GT:AD:AF:DP	0/1:92,29:0.24:121
chr2	28855918	rs34314459	A	AG	11402.73	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr2	28865675	rs114156553	G	T	3476.77	.	AC=1;AF=0.500;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	0/1:178,169:0.49:347
chr2	28975107	rs2276547	G	C	2459.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr2	29001691	rs1128416	A	G	1975.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr2	29041877	rs13009357	T	C	1807.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr2	29045323	rs4436918	C	T	3207.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr2	29052256	rs12998251	T	C	923.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;MQ=60.28;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr2	29052283	rs72449240	G	GT	166.82	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.223;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.54;MQRankSum=0.603;QD=13.90;ReadPosRankSum=2.098;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:1,11:0.92:12
chr2	29087799	rs13030945	C	A	2930.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr2	29129300	.	A	AT	158.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.252;ClippingRankSum=0.000;DP=348;ExcessHet=3.0103;FS=2.037;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=0.000;QD=0.47;ReadPosRankSum=1.985;SOR=0.894;set=HC	GT:AD:AF:DP	0/1:272,63:0.19:335
chr2	29135468	rs6715296	C	G	7864.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr2	29145725	rs9653591	G	T	2274.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:1,89:0.99:90
chr2	29152456	rs1140697	A	G	12099.77	.	AC=2;AF=1.00;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	1/1:0,456:1.00:456
chr2	29158613	.	CAAAAAA	C	434.73	.	AC=2;AF=1.00;AN=2;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.44;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	29161010	rs4233731	G	A	2478.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr2	29169612	rs3087649	T	C	12460.77	.	AC=2;AF=1.00;AN=2;DB;DP=460;set=Intersection	GT:AD:AF:DP	1/1:0,453:1.00:453
chr2	29226498	rs12613325	G	A	11026.77	.	AC=2;AF=1.00;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	1/1:0,408:1.00:408
chr2	29226512	rs12623297	A	G	8986.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:1,331:1.00:332
chr2	29226559	rs12619829	C	T	4347.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr2	29239942	rs11685375	T	G	3416.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:134,158:0.54:292
chr2	29240005	rs13409097	T	C	4616.77	.	AC=1;AF=0.500;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	0/1:228,220:0.49:448
chr2	29240060	rs11127202	A	G	3613.77	.	AC=1;AF=0.500;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	0/1:189,172:0.48:361
chr2	29240582	rs66482868	T	C	1403.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.507;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=8.589;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.31;ReadPosRankSum=-1.391;SOR=0.233;set=HC	GT:AD:AF:DP	0/1:51,63:0.55:114
chr2	29240673	rs35166194	G	A	2676.77	.	AC=1;AF=0.500;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:179,138:0.44:317
chr2	29240686	rs34261417	A	C	2807.77	.	AC=1;AF=0.500;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	0/1:199,140:0.41:339
chr2	29240783	rs1109758	A	G	2346.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:166,122:0.42:288
chr2	29244985	rs143610008	T	G	720.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:44,38:0.46:82
chr2	29249903	rs11884174	G	C	928.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:52,38:0.42:90
chr2	29274720	rs895591	A	G	8539.77	.	AC=1;AF=0.500;AN=2;DB;DP=788;set=Intersection	GT:AD:AF:DP	0/1:377,406:0.52:783
chr2	29287708	rs10182566	C	T	84.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.401;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=5.528;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.99;ReadPosRankSum=0.601;SOR=0.086;set=HC	GT:AD:AF:DP	0/1:11,6:0.35:17
chr2	29287926	rs139768554	C	CGCT	5147.73	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:109,133:0.55:242
chr2	29294629	rs34253433	C	T	5670.77	.	AC=1;AF=0.500;AN=2;DB;DP=545;set=Intersection	GT:AD:AF:DP	0/1:268,272:0.50:540
chr2	29294754	rs17744093	G	C	3239.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:166,139:0.46:305
chr2	29295016	rs10200693	A	G	3031.77	.	AC=1;AF=0.500;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	0/1:179,150:0.46:329
chr2	29295676	rs13385188	G	A	4360.77	.	AC=1;AF=0.500;AN=2;DB;DP=453;set=Intersection	GT:AD:AF:DP	0/1:238,211:0.47:449
chr2	29296870	rs62132765	C	T	4489.77	.	AC=1;AF=0.500;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	0/1:186,205:0.52:391
chr2	29297068	rs35929540	C	T	2968.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:159,144:0.48:303
chr2	29355303	rs4666167	C	T	416.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:29,18:0.38:47
chr2	29356669	rs3100232	A	G	2414.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:139,112:0.45:251
chr2	29366830	rs3213947	A	G	1890.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:89,91:0.51:180
chr2	29366875	rs3217572	C	CACAG	4771.73	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr2	29383256	rs3100246	G	T	5257.77	.	AC=1;AF=0.500;AN=2;DB;DP=495;set=Intersection	GT:AD:AF:DP	0/1:228,249:0.52:477
chr2	29383374	rs2305450	G	A	3333.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr2	29386646	rs10200936	G	C	1192.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:63,54:0.46:117
chr2	29390299	rs11364047	AG	A	3242.73	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:107,98:0.48:205
chr2	29416572	rs1670283	T	C	16317.77	.	AC=2;AF=1.00;AN=2;DB;DP=601;set=Intersection	GT:AD:AF:DP	1/1:0,591:1.00:591
chr2	29419591	rs1670284	G	T	3245.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:138,143:0.51:281
chr2	29444095	rs1569156	C	T	2852.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr2	29446128	rs12989497	A	G	1687.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:62,66:0.52:128
chr2	29449819	rs2293563	C	T	2764.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:150,134:0.47:284
chr2	29455267	rs2256740	A	G	4557.77	.	AC=1;AF=0.500;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	0/1:208,220:0.51:428
chr2	29462520	rs77855517	G	A	1976.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:62,80:0.56:142
chr2	29498210	rs4589708	A	G	3405.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr2	29519588	.	A	AGT	350.73	.	AC=1;AF=0.500;AN=2;DP=39;set=Intersection	GT:AD:AF:DP	0/1:22,14:0.39:36
chr2	29519622	rs2272409	C	T	1985.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr2	29525341	rs11127213	A	G	5242.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.40;SOR=3.278;set=HC	GT:AD:AF:DP	1/1:0,113:1.00:113
chr2	29525345	rs11127214	T	C	5456.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.96;QD=42.63;SOR=3.021;set=HC	GT:AD:AF:DP	1/1:0,128:1.00:128
chr2	29541104	rs2276549	C	T	939.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.997;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.722;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.62;ReadPosRankSum=-1.800;SOR=0.790;set=HC	GT:AD:AF:DP	0/1:59,50:0.46:109
chr2	29543663	rs2293564	T	C	1837.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:83,86:0.51:169
chr2	29606824	rs4499385	G	A	388.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:14,16:0.53:30
chr2	29917940	rs2256376	C	G	1619.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr2	29940529	rs2246745	A	T	12011.77	.	AC=2;AF=1.00;AN=2;DB;DP=513;set=Intersection	GT:AD:AF:DP	1/1:2,486:1.00:488
chr2	30143499	rs4358080	G	C	1287.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:30,48:0.62:78
chr2	30381505	rs1137288	T	C	1844.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr2	30454561	.	G	A	5277.77	.	AC=1;AF=0.500;AN=2;DP=515;set=Intersection	GT:AD:AF:DP	0/1:249,256:0.51:505
chr2	30682360	rs829574	G	A	867.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:70,43:0.38:113
chr2	30682630	rs829573	T	A	1186.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:63,51:0.45:114
chr2	30748733	rs766880	G	T	853.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:49,38:0.44:87
chr2	30775299	rs12053428	G	A	2033.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr2	30775461	rs17009714	G	A	1242.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:93,63:0.40:156
chr2	30791152	rs6749074	A	G	576.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:26,26:0.50:52
chr2	30828792	rs2248777	G	A	1191.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:57,57:0.50:114
chr2	30862842	rs150564049	AG	A	1461.73	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:49,44:0.47:93
chr2	30862980	rs12466818	C	T	5039.77	.	AC=1;AF=0.500;AN=2;DB;DP=578;set=Intersection	GT:AD:AF:DP	0/1:323,251:0.44:574
chr2	30863092	rs12467646	C	T	3991.77	.	AC=1;AF=0.500;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	0/1:216,194:0.47:410
chr2	30863108	rs12471868	A	G	4120.77	.	AC=1;AF=0.500;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	0/1:201,193:0.49:394
chr2	30955528	rs2276567	C	A	373.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:27,18:0.40:45
chr2	30959262	rs509380	G	T	2237.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:113,106:0.48:219
chr2	30968760	.	ATTTTT	A	542.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.351;ClippingRankSum=0.000;DP=83;ExcessHet=3.0103;FS=3.222;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.110;QD=11.80;ReadPosRankSum=2.285;SOR=2.147;set=HC	GT:AD:AF:DP	0/1:22,24:0.52:46
chr2	30976058	rs2926304	C	T	3922.77	.	AC=1;AF=0.500;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	0/1:171,185:0.52:356
chr2	30977073	rs485100	G	A	3972.77	.	AC=1;AF=0.500;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	0/1:197,187:0.49:384
chr2	30980940	rs508405	C	T	2309.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:129,112:0.46:241
chr2	30986989	rs579016	G	T	2331.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:118,112:0.49:230
chr2	31009977	rs1915125	G	C	420.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:12,16:0.57:28
chr2	31188957	rs889896	C	T	1478.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr2	31401290	rs4952052	A	C	4189.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr2	31403862	rs199964386	C	G	5481.77	.	AC=1;AF=0.500;AN=2;DB;DP=486;set=Intersection	GT:AD:AF:DP	0/1:222,259:0.54:481
chr2	31410708	rs1822496	C	T	14316.77	.	AC=2;AF=1.00;AN=2;DB;DP=543;set=Intersection	GT:AD:AF:DP	1/1:0,531:1.00:531
chr2	31414807	rs1562022	C	G	3632.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr2	31415967	rs7591444	T	C	2141.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:54,86:0.61:140
chr2	31416213	rs11124248	T	C	1473.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:97,67:0.41:164
chr2	31416305	rs11124249	C	T	944.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.890;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=1.921;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.86;ReadPosRankSum=-1.266;SOR=0.377;set=HC	GT:AD:AF:DP	0/1:13,25:0.66:38
chr2	31416309	rs11124250	A	G	887.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.616;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=1.974;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.11;ReadPosRankSum=-1.454;SOR=0.337;set=HC	GT:AD:AF:DP	0/1:12,22:0.65:34
chr2	31416317	rs12619774	C	G	652.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.803;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.31;ReadPosRankSum=-0.360;SOR=1.220;set=HC	GT:AD:AF:DP	0/1:11,17:0.61:28
chr2	31424885	rs11692905	C	T	2968.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:145,137:0.49:282
chr2	31457817	rs2236170	T	C	1076.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:43,41:0.49:84
chr2	31467351	rs2295473	T	A	5081.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr2	31483890	rs13028669	T	C	2718.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:1,99:0.99:100
chr2	31484334	rs654650	G	A	4037.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr2	31488965	rs619002	C	T	3002.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr2	31489627	rs67643147	TAC	T	166.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.289;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.40;ReadPosRankSum=0.560;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:36,13:0.27:49
chr2	31565316	rs35235275	C	T	1251.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:62,56:0.47:118
chr2	31567743	rs566224	T	C	3280.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr2	31569471	rs7599175	A	G	1029.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:36,46:0.56:82
chr2	31570376	rs1366813	T	C	755.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:49,36:0.42:85
chr2	31570626	rs4952083	C	T	680.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.452;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.02;ReadPosRankSum=0.645;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:21,19:0.47:40
chr2	31570631	rs4952084	A	G	654.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.413;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=1.561;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.12;ReadPosRankSum=-1.483;SOR=0.420;set=HC	GT:AD:AF:DP	0/1:14,17:0.55:31
chr2	31571241	rs13415401	G	C	1796.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:81,83:0.51:164
chr2	31571786	rs1884725	A	G	2385.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:102,113:0.53:215
chr2	31572398	rs1429374	A	G	686.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:25,27:0.52:52
chr2	31572482	rs11408029	T	TG	1741.73	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:85,68:0.44:153
chr2	31587235	rs1018505	G	A	1076.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:68,52:0.43:120
chr2	31588288	rs2365842	T	A	4463.77	.	AC=1;AF=0.500;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	0/1:224,218:0.49:442
chr2	31589847	rs2295475	G	A	3889.77	.	AC=1;AF=0.500;AN=2;DB;DP=451;MQ=60.02;set=Intersection	GT:AD:AF:DP	0/1:249,199:0.44:448
chr2	31590785	rs761926	C	G	2011.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:113,92:0.45:205
chr2	31593290	rs142197675	G	A	2084.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:193,109:0.36:302
chr2	31600146	rs10187719	T	C	633.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:28,29:0.51:57
chr2	31609448	rs477626	A	C	6326.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr2	31805619	rs619857	T	C	1780.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr2	31805880	rs142200057	A	AG	12407.73	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:0,351:1.00:351
chr2	32117217	.	G	GA	52.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.561;ClippingRankSum=0.000;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.44;ReadPosRankSum=-0.620;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:101,20:0.17:121
chr2	32312700	rs7561519	T	C	549.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.347;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=-1.038;QD=9.82;ReadPosRankSum=1.852;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:26,30:0.54:56
chr2	32314473	rs469305	A	T	112.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.783;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=2.392;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.63;ReadPosRankSum=0.095;SOR=1.552;set=HC	GT:AD:AF:DP	0/1:8,9:0.53:17
chr2	32324072	rs7566162	T	C	924.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:27,33:0.55:60
chr2	32361482	rs11392886	T	TC	178.73	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:3,7:0.70:10
chr2	32362079	rs10627985	G	GTATA	2534.73	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:91,67:0.42:158
chr2	32369901	rs2365556	T	C	2388.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr2	32390834	rs6733481	A	C	228.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:10,9:0.47:19
chr2	32412065	.	CAAAAA	C	214.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.837;ClippingRankSum=0.000;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.07;ReadPosRankSum=0.311;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:54,16:0.23:70
chr2	32418808	rs212751	T	A	772.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:29,36:0.55:65
chr2	32434701	rs212685	A	G	489.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:17,20:0.54:37
chr2	32449871	rs376045897	ATTTT	A,ATTT	1593.73	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=255;set=Intersection	GT:AF:DP	0/1:0.41:198
chr2	32449879	rs199998217	T	TAAA	2411.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.277;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=4.434;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.78;ReadPosRankSum=0.126;SOR=1.114;set=HC	GT:AD:AF:DP	0/1:91,84:0.48:175
chr2	32460348	rs212714	A	G	792.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:17,35:0.67:52
chr2	32461493	rs55638726	T	TC	487.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	32466029	rs212721	A	G	1113.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:67,52:0.44:119
chr2	32475109	rs455060	G	A	7428.77	.	AC=1;AF=0.500;AN=2;DB;DP=723;set=Intersection	GT:AD:AF:DP	0/1:370,346:0.48:716
chr2	32476390	rs408813	T	G	3632.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:152,164:0.52:316
chr2	32481793	rs11295492	AT	A	2928.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:82,76:0.48:158
chr2	32481795	rs59966205	T	A	2937.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:82,77:0.48:159
chr2	32667058	rs55734616	C	A	4288.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.12;SOR=4.294;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr2	32667061	rs60955793	T	A	4322.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.11;SOR=4.197;set=HC	GT:AD:AF:DP	1/1:0,98:1.00:98
chr2	32667182	rs60197615	G	C	15505.77	.	AC=2;AF=1.00;AN=2;DB;DP=576;set=Intersection	GT:AD:AF:DP	1/1:0,565:1.00:565
chr2	32667562	rs2276592	A	G	1205.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:59,56:0.49:115
chr2	32688601	rs762019	A	C	298.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:10,11:0.52:21
chr2	32690317	rs11353879	AT	A	131.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.360;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.49;ReadPosRankSum=0.681;SOR=1.371;set=HC	GT:AD:AF:DP	0/1:8,16:0.67:24
chr2	32706579	rs9646977	T	A	3115.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr2	32707476	rs71446071	T	G	2949.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:112,128:0.53:240
chr2	32712875	rs2366891	A	C	7190.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:1,249:1.00:250
chr2	32713706	rs2366894	A	T	294.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.594;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.41;ReadPosRankSum=-1.941;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:28,18:0.39:46
chr2	32724590	rs145668508	GTC	G	666.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.354;ClippingRankSum=0.000;DB;DP=299;ExcessHet=3.0103;FS=2.304;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.36;ReadPosRankSum=0.951;SOR=0.920;set=HC	GT:AD:AF:DP	0/1:230,52:0.18:282
chr2	32740138	rs34757266	T	C	5956.77	.	AC=1;AF=0.500;AN=2;DB;DP=584;set=Intersection	GT:AD:AF:DP	0/1:293,285:0.49:578
chr2	32749880	rs2710609	C	T	826.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.93;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	32749890	rs2710610	C	T	1096.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=49.85;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	32749893	rs2710611	A	T	1130.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.23;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	32749903	rs2710612	T	C	1194.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.67;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	32757201	.	C	CGTGTGTGT	408.73	.	AC=2;AF=1.00;AN=2;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.83;QD=45.41;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	32822729	rs2583713	A	G	611.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:17,22:0.56:39
chr2	32822957	rs2710625	G	A	2730.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:139,134:0.49:273
chr2	32855615	rs2710623	A	G	1333.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.68;SOR=1.051;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr2	32860415	rs11124286	C	T	4560.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr2	32889576	rs12988468	A	G	280.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:13,13:0.50:26
chr2	32927863	rs2273659	G	A	4131.77	.	AC=1;AF=0.500;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	0/1:192,200:0.51:392
chr2	32958838	rs3830967	CTT	C	4234.73	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:118,111:0.48:229
chr2	32959024	rs1551177	T	C	6133.77	.	AC=1;AF=0.500;AN=2;DB;DP=568;set=Intersection	GT:AD:AF:DP	0/1:279,281:0.50:560
chr2	32959075	rs3818266	G	A	3028.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:129,136:0.51:265
chr2	32961691	rs17497801	C	T	746.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:34,33:0.49:67
chr2	32961745	rs10200333	T	A	5173.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr2	32983526	rs2273665	C	T	3037.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:162,144:0.47:306
chr2	33036324	rs3731578	G	A	641.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:30,29:0.49:59
chr2	33045867	rs138344718	G	GT	1952.73	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:112,100:0.47:212
chr2	33172307	rs112060237	C	G	72.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:8,4:0.33:12
chr2	33172362	rs62135679	C	T	409.78	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:4,17:0.81:21
chr2	33172520	.	G	T	1955.77	.	AC=1;AF=0.500;AN=2;DP=152;set=Intersection	GT:AD:AF:DP	0/1:62,89:0.59:151
chr2	33414009	rs3922572	T	A	398.73	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:16,23:0.59:39
chr2	33442549	rs2290449	G	A	891.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:45,39:0.46:84
chr2	33447202	rs2290448	C	T	4369.77	.	AC=1;AF=0.500;AN=2;DB;DP=552;set=Intersection	GT:AD:AF:DP	0/1:315,232:0.42:547
chr2	33477964	rs3731575	C	T	598.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:25,27:0.52:52
chr2	33488419	rs12468099	G	A	3420.77	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:156,169:0.52:325
chr2	33500848	rs3816479	A	G	4026.77	.	AC=1;AF=0.500;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	0/1:240,200:0.45:440
chr2	33525407	rs2123769	A	G	594.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:46,32:0.41:78
chr2	33540138	rs2276591	G	A	1674.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr2	33540172	rs3216704	A	AT	978.73	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:46,53:0.54:99
chr2	33540248	rs1058840	G	A	8225.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr2	33585796	rs4422143	T	C	15465.77	.	AC=2;AF=1.00;AN=2;DB;DP=604;set=Intersection	GT:AD:AF:DP	1/1:2,593:1.00:595
chr2	33586464	rs11442294	C	CT	1324.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.257;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=1.876;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.68;ReadPosRankSum=-1.132;SOR=0.947;set=HC	GT:AD:AF:DP	0/1:39,85:0.69:124
chr2	33614187	rs642472	C	T	3122.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr2	33622448	rs2367734	T	C	525.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:17,24:0.59:41
chr2	33622475	rs12053346	T	C	451.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:9,21:0.70:30
chr2	33623306	rs2034693	C	T	634.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:35,27:0.44:62
chr2	33623387	rs624060	AT	GC	4800.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;JOINED;set=Intersection	GT:AD:AF:DP	0/1:128,123:0.49:251
chr2	33623734	rs622716	A	G	428.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:18,18:0.50:36
chr2	33643740	rs6724875	T	G	402.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.225;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=2.373;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.90;ReadPosRankSum=2.046;SOR=0.426;set=HC	GT:AD:AF:DP	0/1:22,29:0.57:51
chr2	33643745	rs76703549	T	A	399.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.323;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.84;ReadPosRankSum=1.695;SOR=0.561;set=HC	GT:AD:AF:DP	0/1:22,29:0.57:51
chr2	33783392	rs192400130	C	T	1671.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:85,77:0.48:162
chr2	33787976	rs10572554	CCTAA	C	3457.73	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr2	33952022	rs4670913	C	A	411.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:40,20:0.33:60
chr2	33952055	rs2290101	C	G	1045.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:48,42:0.47:90
chr2	33952413	rs4477896	T	C	5367.77	.	AC=1;AF=0.500;AN=2;DB;DP=476;set=Intersection	GT:AD:AF:DP	0/1:229,241:0.51:470
chr2	33952456	rs2367810	C	G	14615.77	.	AC=2;AF=1.00;AN=2;DB;DP=529;set=Intersection	GT:AD:AF:DP	1/1:0,525:1.00:525
chr2	33952621	rs11684598	G	A	10274.77	.	AC=1;AF=0.500;AN=2;DB;DP=973;set=Intersection	GT:AD:AF:DP	0/1:476,482:0.50:958
chr2	35696612	rs4670472	C	T	741.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	36605304	rs4670546	G	A	253.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:15,11:0.42:26
chr2	36605417	rs4670547	A	G	6083.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr2	36605585	rs4670548	A	G	4328.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr2	36670011	rs3732073	T	C	461.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	36704144	rs848547	C	T	7475.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr2	36706511	rs711250	G	C	367.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:24,17:0.41:41
chr2	36739553	rs848526	T	C	1095.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:56,55:0.50:111
chr2	36756288	rs711247	T	C	4429.77	.	AC=1;AF=0.500;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	0/1:202,215:0.52:417
chr2	36771701	rs2276671	C	A	684.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:46,34:0.42:80
chr2	36775315	rs2270333	C	G	422.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:18,21:0.54:39
chr2	36775410	rs11318146	CT	C	80.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.518;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.34;MQRankSum=2.477;QD=1.58;ReadPosRankSum=-0.563;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:35,16:0.31:51
chr2	36782886	rs848642	G	A	5731.77	.	AC=1;AF=0.500;AN=2;DB;DP=570;set=Intersection	GT:AD:AF:DP	0/1:293,265:0.47:558
chr2	36808732	rs848637	T	G	2197.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:106,99:0.48:205
chr2	36824956	rs5830430	G	GC	2225.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr2	36825137	rs1544655	G	A	2999.77	.	AC=1;AF=0.500;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	0/1:218,157:0.42:375
chr2	36825170	rs2287104	T	C	2522.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:165,126:0.43:291
chr2	36825330	rs11441122	C	CG,CGGCCCAGCCCG	2643.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=77;set=Intersection	GT:AF:DP	1/1:1.00:69
chr2	36825336	.	G	GCCCGGCCCAGCCCGGCCCCGC	158.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.288;ClippingRankSum=0.000;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=-1.593;QD=3.61;ReadPosRankSum=0.751;SOR=0.392;set=HC	GT:AD:AF:DP	0/1:36,8:0.18:44
chr2	36943338	rs4670597	C	G	2367.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr2	36943419	rs4670598	T	C	7428.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr2	36965582	rs35608380	TC	T	162.73	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:9,7:0.44:16
chr2	36986088	rs199720074	G	GT	135.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.279;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=0.841;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.88;ReadPosRankSum=2.752;SOR=0.531;set=HC	GT:AD:AF:DP	0/1:128,27:0.17:155
chr2	37000797	rs3770784	C	G	1153.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr2	37000877	rs116154541	A	T	5268.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.059;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=27.30;ReadPosRankSum=1.369;SOR=1.548;set=HC	GT:AD:AF:DP	1/1:2,191:0.99:193
chr2	37001570	rs974964	C	T	4631.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr2	37010574	rs3821147	G	A	10150.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	1/1:0,379:1.00:379
chr2	37041480	rs17441812	G	A	7518.77	.	AC=1;AF=0.500;AN=2;DB;DP=693;set=Intersection	GT:AD:AF:DP	0/1:321,366:0.53:687
chr2	37077015	rs723674	C	A	2684.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr2	37078095	rs10668550	A	AT	473.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.282;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=1.669;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.28;ReadPosRankSum=0.875;SOR=0.364;set=HC	GT:AD:AF:DP	0/1:11,31:0.74:42
chr2	37094945	rs2540923	A	G	3074.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr2	37096970	rs2160379	C	T	1174.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr2	37111045	rs2691106	T	A	1238.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:72,58:0.45:130
chr2	37129618	rs148671880	A	ATAAT	3062.73	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=49.40;SOR=6.869;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr2	37234480	rs3080796	CTTT	C	544.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.792;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=4.439;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.34;ReadPosRankSum=2.017;SOR=2.093;set=HC	GT:AD:AF:DP	0/1:13,25:0.66:38
chr2	37234519	rs2013223	T	C	412.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:12,15:0.56:27
chr2	37241050	rs17020125	G	A	3246.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:164,155:0.49:319
chr2	37248015	rs17020136	T	C	618.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:40,30:0.43:70
chr2	37255015	rs2540998	G	A	3277.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr2	37280571	rs75117295	T	A	248.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:8,10:0.56:18
chr2	37292890	rs11903252	T	G	903.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:59,47:0.44:106
chr2	37297329	rs4327218	C	G	3861.77	.	AC=1;AF=0.500;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	0/1:219,193:0.47:412
chr2	37302556	rs34545380	GA	G	3739.73	.	AC=2;AF=1.00;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.06;QD=21.87;SOR=2.103;set=HC	GT:AD:AF:DP	1/1:0,171:1.00:171
chr2	37306343	rs6743906	G	A	3387.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr2	37316717	.	T	TA	275.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.073;ClippingRankSum=0.000;DP=124;ExcessHet=3.0103;FS=4.841;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.38;ReadPosRankSum=1.069;SOR=0.304;set=HC	GT:AD:AF:DP	0/1:82,34:0.29:116
chr2	37317869	rs4670654	C	T	1777.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr2	37318041	rs4670655	A	G	317.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	37373982	rs2307475	A	AT	7680.73	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr2	37402270	rs11569755	C	G	344.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:17,19:0.53:36
chr2	37402373	rs11569758	A	G	412.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:49,25:0.34:74
chr2	37406644	rs10182091	A	G	5158.77	.	AC=1;AF=0.500;AN=2;DB;DP=533;set=Intersection	GT:AD:AF:DP	0/1:266,261:0.50:527
chr2	37406680	rs10205833	C	G	4201.77	.	AC=1;AF=0.500;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	0/1:222,206:0.48:428
chr2	37406761	rs4459710	T	C	1623.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:83,72:0.46:155
chr2	37406807	rs2111630	A	G	735.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:29,31:0.52:60
chr2	37410537	rs6544061	C	T	2319.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:88,105:0.54:193
chr2	37414431	rs6724820	A	C	549.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:37,28:0.43:65
chr2	37415496	rs11124566	G	C	2737.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr2	37428743	rs2540973	C	T	465.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	37438274	rs116198115	T	C	420.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:37,24:0.39:61
chr2	37438993	rs1137437	G	A	8937.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr2	37447465	rs11124567	A	G	716.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.140;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.60;ReadPosRankSum=-0.134;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:2,26:0.93:28
chr2	37447473	rs57004489	T	A	1046.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.77;SOR=2.387;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	37447475	rs74177066	T	A	1045.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.73;SOR=2.387;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	37456032	rs2098386	C	T	8255.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr2	37458711	rs3213745	G	A	20994.77	.	AC=2;AF=1.00;AN=2;DB;DP=782;set=Intersection	GT:AD:AF:DP	1/1:2,766:1.00:768
chr2	37480249	rs1056021	A	G	601.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:27,29:0.52:56
chr2	37499289	rs11124574	T	C	283.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:15,12:0.44:27
chr2	37518045	rs10177176	G	C	6158.77	.	AC=1;AF=0.500;AN=2;DB;DP=568;set=Intersection	GT:AD:AF:DP	0/1:272,290:0.52:562
chr2	37586681	rs2302651	A	G	1161.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:80,59:0.42:139
chr2	37595604	rs3770747	C	T	3252.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr2	37595696	rs1468816	A	C	9514.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	1/1:1,350:1.00:351
chr2	37599619	rs112031803	ATG	A	120.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.793;ClippingRankSum=0.000;DB;DP=328;ExcessHet=3.0103;FS=1.664;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=0.000;QD=0.48;ReadPosRankSum=0.847;SOR=0.488;set=HC	GT:AD:AF:DP	0/1:226,27:0.11:253
chr2	38177525	rs11687301	A	C	2771.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:112,124:0.53:236
chr2	38178362	rs2197561	T	C	2001.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:80,83:0.51:163
chr2	38178406	rs4670799	A	G	2836.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:153,135:0.47:288
chr2	38179134	rs4670800	G	A	24403.77	.	AC=2;AF=1.00;AN=2;DB;DP=902;set=Intersection	GT:AD:AF:DP	1/1:0,899:1.00:899
chr2	38179414	rs72332368	CTG	C	5194.73	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:102,133:0.57:235
chr2	38202502	rs2044447	A	G	483.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:20,23:0.53:43
chr2	38208233	rs1446297	T	C	392.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:13,17:0.57:30
chr2	38208606	rs61676428	A	T	269.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:18,12:0.40:30
chr2	38218281	rs17021813	T	C	1094.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:51,52:0.50:103
chr2	38244417	rs114342890	G	T	1213.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.226;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.34;ReadPosRankSum=0.835;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:47,60:0.56:107
chr2	38244818	rs11901988	A	C	1845.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.572;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=2.318;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.65;ReadPosRankSum=-1.546;SOR=0.969;set=HC	GT:AD:AF:DP	0/1:74,52:0.41:126
chr2	38244824	rs11891536	G	A	1722.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.900;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=2.365;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.48;ReadPosRankSum=-1.046;SOR=0.919;set=HC	GT:AD:AF:DP	0/1:72,47:0.39:119
chr2	38298139	rs1800440	T	C	3003.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:136,133:0.49:269
chr2	38298150	rs1056837	A	G	7054.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:1,265:1.00:266
chr2	38298203	rs1056836	C	G	6466.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr2	38302177	rs1056827	C	A	3157.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:118,152:0.56:270
chr2	38302390	rs10012	G	C	1761.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:80,86:0.52:166
chr2	38302544	rs2617266	G	A	1059.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:54,50:0.48:104
chr2	38527397	rs369327955	ACT	A	236.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.028;ClippingRankSum=0.000;DB;DP=300;ExcessHet=3.0103;FS=6.357;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.85;ReadPosRankSum=0.635;SOR=1.322;set=HC	GT:AD:AF:DP	0/1:243,34:0.12:277
chr2	38809162	rs2253519	C	T	1476.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:75,71:0.49:146
chr2	38813167	.	C	CT	244.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.432;ClippingRankSum=0.000;DP=108;ExcessHet=3.0103;FS=2.954;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=0.000;QD=3.50;ReadPosRankSum=2.897;SOR=0.161;set=HC	GT:AD:AF:DP	0/1:43,27:0.39:70
chr2	38956947	rs2272445	A	G	1879.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:96,85:0.47:181
chr2	38975332	.	G	GT	271.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.666;ClippingRankSum=0.000;DP=176;ExcessHet=3.0103;FS=3.463;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.000;QD=2.45;ReadPosRankSum=-1.311;SOR=1.125;set=HC	GT:AD:AF:DP	0/1:76,35:0.32:111
chr2	38977371	rs3112183	C	T	13617.77	.	AC=2;AF=1.00;AN=2;DB;DP=513;set=Intersection	GT:AD:AF:DP	1/1:2,497:1.00:499
chr2	38977402	rs3134630	T	C	9585.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:2,330:0.99:332
chr2	39006454	.	C	T	940.77	.	AC=1;AF=0.500;AN=2;DP=56;set=Intersection	GT:AD:AF:DP	0/1:19,35:0.65:54
chr2	39006603	rs3112201	T	G	5939.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr2	39025043	rs34252629	GA	G,GAA	690.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.063;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.19;MQRankSum=0.387;QD=12.12;ReadPosRankSum=-0.820;SOR=2.056;set=HC	GT:AD:AF:DP	1/2:5,28,24:0.49,0.42:57
chr2	39025555	rs1530853	G	A	4595.77	.	AC=1;AF=0.500;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	0/1:229,223:0.49:452
chr2	39025632	rs1530852	A	G	1913.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:105,92:0.47:197
chr2	39030074	rs13029406	C	T	1830.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:134,90:0.40:224
chr2	39040845	rs7419838	G	A	1436.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:61,60:0.50:121
chr2	39042639	rs3112138	G	A	13456.77	.	AC=2;AF=1.00;AN=2;DB;DP=510;set=Intersection	GT:AD:AF:DP	1/1:0,499:1.00:499
chr2	39043388	rs140059191	G	C	685.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:58,36:0.38:94
chr2	39045885	rs10176932	C	T	1005.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:41,40:0.49:81
chr2	39050019	rs3112146	G	T	1665.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr2	39050061	rs34582261	AT	A	4050.73	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr2	39050141	rs3770681	A	C	4386.77	.	AC=1;AF=0.500;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	0/1:154,201:0.57:355
chr2	39055337	rs72797362	G	A	1825.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:62,82:0.57:144
chr2	39065729	rs17494315	C	A	4496.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr2	39075356	rs11124651	A	C	1728.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr2	39082344	rs7598922	T	C	10288.77	.	AC=2;AF=1.00;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	1/1:0,357:1.00:357
chr2	39083645	rs372510406	CT	C	176.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.190;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=-0.651;QD=2.81;ReadPosRankSum=-0.356;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:38,25:0.40:63
chr2	39090696	rs3099999	T	C	8257.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr2	39117117	rs7565111	G	A	8329.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:2,310:0.99:312
chr2	39181774	.	CTT	C	338.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.650;ClippingRankSum=0.000;DP=53;ExcessHet=3.0103;FS=6.532;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.29;ReadPosRankSum=-1.139;SOR=4.047;set=HC	GT:AD:AF:DP	0/1:16,14:0.47:30
chr2	39185048	rs422854	C	T	3811.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr2	39187190	rs6755527	T	C	9036.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr2	39187519	rs958412	A	G	3032.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr2	39198966	rs2305516	A	G	4581.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr2	39214821	rs2290445	A	C	748.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr2	39224351	rs1454223	G	T	2949.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr2	39224615	rs5830551	G	GT	2079.73	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr2	39233500	rs7577088	G	A	393.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	39240584	.	T	TA	48.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.180;ClippingRankSum=0.000;DP=75;ExcessHet=3.0103;FS=2.645;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.72;ReadPosRankSum=-0.509;SOR=1.103;set=HC	GT:AD:AF:DP	0/1:55,13:0.19:68
chr2	39241107	rs56219475	G	A	1568.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:126,81:0.39:207
chr2	39251375	rs10634554	T	TCAC	1447.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	39262068	rs10153761	C	T	8122.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr2	39262296	.	C	CA	56.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.593;ClippingRankSum=0.000;DP=75;ExcessHet=3.0103;FS=1.305;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.82;ReadPosRankSum=-0.448;SOR=0.386;set=HC	GT:AD:AF:DP	0/1:55,14:0.20:69
chr2	39281730	rs997344	G	C	511.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	39406572	rs7566123	C	A	3693.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr2	39411863	rs141702509	A	ATG	363.73	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:17,15:0.47:32
chr2	39440727	rs10196407	G	C	562.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:45,31:0.41:76
chr2	39452861	rs11124663	C	T	2081.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr2	39479122	rs3770678	G	C	557.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	39494197	rs2302749	C	T	798.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:32,36:0.53:68
chr2	39494469	rs10865149	C	G	615.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	39499614	rs17023530	T	A	1237.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.114;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=3.609;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.25;ReadPosRankSum=-1.319;SOR=0.402;set=HC	GT:AD:AF:DP	0/1:51,59:0.54:110
chr2	39507417	rs3755176	T	A	1622.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:69,80:0.54:149
chr2	39514136	rs3755172	T	C	401.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:30,20:0.40:50
chr2	39514204	rs3755171	G	C	103.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:9,5:0.36:14
chr2	39520095	.	T	C	404.77	.	AC=1;AF=0.500;AN=2;DP=30;set=Intersection	GT:AD:AF:DP	0/1:13,17:0.57:30
chr2	39526842	rs2111382	A	C	2520.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr2	39542658	rs5830562	AT	A	330.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.088;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.28;MQRankSum=0.738;QD=15.75;ReadPosRankSum=0.083;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:1,20:0.95:21
chr2	39553271	rs3815594	A	G	7949.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr2	39558928	rs6760382	G	A	297.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	39564620	rs1125839	C	A	1746.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr2	39570427	rs3732053	T	C	2010.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr2	39583446	rs8545	A	G	5882.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr2	39664010	rs113021812	C	T	3777.77	.	AC=1;AF=0.500;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	0/1:165,183:0.53:348
chr2	39944055	rs2540229	G	A	2897.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr2	39982898	rs10688564	G	GAGTAT	637.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	39993167	rs4670959	T	C	2288.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:107,113:0.51:220
chr2	40006430	rs12620957	A	C	1249.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:22,35:0.61:57
chr2	40006442	rs35761077	C	T	1110.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:21,29:0.58:50
chr2	40006476	.	G	GGGGAGA	115.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.534;ClippingRankSum=-0.000;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.57;ReadPosRankSum=-0.000;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:3,7:0.70:10
chr2	40392313	rs434725	G	C	1003.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:34,38:0.53:72
chr2	40402064	rs6760003	A	T	1193.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:87,60:0.41:147
chr2	40402275	rs6734847	G	A	478.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:24,22:0.48:46
chr2	40402602	rs10199306	C	T	351.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:21,17:0.45:38
chr2	40403104	rs106706	A	G	1258.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.268;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=0.639;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.99;ReadPosRankSum=-0.604;SOR=0.584;set=HC	GT:AD:AF:DP	0/1:70,70:0.50:140
chr2	40655563	rs3838567	CCACA	C,CCA	3171.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=2.172;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=13.121;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.08;MQRankSum=0.246;QD=28.32;ReadPosRankSum=-0.123;SOR=2.350;set=HC	GT:AD:AF:DP	1/2:4,31,77:0.28,0.69:112
chr2	42181051	rs3038317	GCA	G	414.73	.	AC=1;AF=0.500;AN=2;DB;DP=39;MQ=60.28;set=Intersection	GT:AD:AF:DP	0/1:12,22:0.65:34
chr2	42275664	rs187184761	T	C	174.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:11,9:0.45:20
chr2	42275819	rs11897440	T	C	2625.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:107,128:0.54:235
chr2	42280300	rs34482969	G	A	370.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:16,18:0.53:34
chr2	42280358	rs35771566	C	T	1304.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:53,63:0.54:116
chr2	42282632	rs13401037	A	T	2169.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:87,95:0.52:182
chr2	42396722	rs7233	A	G	7910.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr2	42491951	rs6735571	C	T	526.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:43,28:0.39:71
chr2	42510018	rs6736913	A	G	7286.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr2	42515388	rs10202624	A	G	1428.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:71,70:0.50:141
chr2	42515501	rs10179237	C	T	699.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:54,38:0.41:92
chr2	42544821	rs7558501	C	T	564.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:8,23:0.74:31
chr2	42552742	rs10530482	TTATATATATATATATATA	T	70.14	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.38;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr2	42560975	rs7572231	A	G	1174.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:83,61:0.42:144
chr2	42719847	rs113015907	T	TG	10939.73	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr2	42719860	rs112592817	G	GC	12237.73	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr2	42795954	rs78106475	T	C	3056.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr2	42836516	rs6720277	A	G	3957.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr2	42922888	rs66547039	AT	A	238.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.085;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.50;ReadPosRankSum=1.788;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:30,23:0.43:53
chr2	42925079	rs148782944	TTTC	T	209.73	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:9,7:0.44:16
chr2	42931217	rs2304658	A	C	1044.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr2	42935961	rs4953577	C	T	4499.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr2	42935979	rs4953578	C	T	5330.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr2	42950185	rs62144300	C	T	5439.77	.	AC=1;AF=0.500;AN=2;DB;DP=527;set=Intersection	GT:AD:AF:DP	0/1:259,257:0.50:516
chr2	42990336	rs1992286	T	G	10715.77	.	AC=2;AF=1.00;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	1/1:0,362:1.00:362
chr2	42994505	rs13032819	G	C	725.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:19,31:0.62:50
chr2	42996709	rs35746707	ATGTGTGTGTG	A,ATG	1614.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=36.70;SOR=1.730;set=HC	GT:AD:AF:DP	1/2:0,25,19:0.57,0.43:44
chr2	42996759	rs34567167	AAGAGAG	AAG,A	3280.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=81;set=Intersection	GT:AF:DP	1/1:1.00:76
chr2	42997614	rs2241850	G	A	2553.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:126,120:0.49:246
chr2	43011169	rs4953660	G	T	1887.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:99,90:0.48:189
chr2	43015612	rs3816181	G	T	8976.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr2	43015704	rs3816182	T	A	5669.77	.	AC=1;AF=0.500;AN=2;DB;DP=552;set=Intersection	GT:AD:AF:DP	0/1:274,276:0.50:550
chr2	43015719	rs3816183	T	C	13537.77	.	AC=2;AF=1.00;AN=2;DB;DP=513;set=Intersection	GT:AD:AF:DP	1/1:0,511:1.00:511
chr2	43015757	rs3816184	G	A	10865.77	.	AC=2;AF=1.00;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	1/1:0,403:1.00:403
chr2	43015814	rs62143190	G	A	2315.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:91,103:0.53:194
chr2	43015902	rs3816185	G	A	1456.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr2	43019730	rs2304656	A	G	4414.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr2	43452183	rs7933	A	G	3200.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:149,134:0.47:283
chr2	43514036	rs11900952	G	A	1294.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:112,67:0.37:179
chr2	43625078	rs7605661	T	C	1594.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:44,70:0.61:114
chr2	43625184	rs33979934	T	A	3176.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:136,148:0.52:284
chr2	43657510	rs35340152	T	A	661.73	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:45,40:0.47:85
chr2	43732958	rs3764769	C	T	611.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:28,26:0.48:54
chr2	43754992	rs1491508	C	T	1256.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:57,61:0.52:118
chr2	43768545	rs72790940	T	G	873.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:32,34:0.52:66
chr2	43778857	rs34461850	GA	G	90.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.517;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.21;ReadPosRankSum=1.088;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:28,13:0.32:41
chr2	43787576	rs4337518	G	A	603.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:36,28:0.44:64
chr2	43793725	rs1158411	G	A	1917.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:98,85:0.46:183
chr2	43793963	rs34512555	T	TAA	292.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.040;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.85;ReadPosRankSum=1.499;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:27,23:0.46:50
chr2	43797619	rs17031056	C	T	1599.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:84,78:0.48:162
chr2	43797710	rs11904510	G	A	1051.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:36,46:0.56:82
chr2	43798792	rs11884742	G	A	2789.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:130,133:0.51:263
chr2	43799070	rs3752355	C	T	1166.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr2	43800174	rs11898207	A	G	7376.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr2	43801712	rs11899823	A	G	17795.77	.	AC=2;AF=1.00;AN=2;DB;DP=655;set=Intersection	GT:AD:AF:DP	1/1:0,641:1.00:641
chr2	43802261	rs970175	C	A	1439.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr2	43804229	rs13021894	T	C	13233.77	.	AC=2;AF=1.00;AN=2;DB;DP=494;set=Intersection	GT:AD:AF:DP	1/1:1,487:1.00:488
chr2	43805608	rs6759861	C	G	565.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:45,30:0.40:75
chr2	43805739	rs61754256	C	T	1842.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:170,98:0.37:268
chr2	43817950	rs35899859	CT	C	1224.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.441;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.06;ReadPosRankSum=0.260;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:79,73:0.48:152
chr2	43819139	rs17031095	A	G	1166.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:94,61:0.39:155
chr2	43871983	rs12105773	T	C	6783.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:1,241:1.00:242
chr2	43872032	rs4450661	A	G	1510.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:50,61:0.55:111
chr2	43902511	rs755862	G	C	3785.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:1,137:0.99:138
chr2	43902757	rs143787127	C	G	4180.77	.	AC=1;AF=0.500;AN=2;DB;DP=495;set=Intersection	GT:AD:AF:DP	0/1:270,218:0.45:488
chr2	43903066	rs3828297	A	G	18568.77	.	AC=2;AF=1.00;AN=2;DB;DP=688;set=Intersection	GT:AD:AF:DP	1/1:0,683:1.00:683
chr2	43903354	rs4952675	T	C	20030.77	.	AC=2;AF=1.00;AN=2;DB;DP=732;MQ=60.01;set=Intersection	GT:AD:AF:DP	1/1:4,721:0.99:725
chr2	43903483	rs4952995	T	C	7747.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:1,295:1.00:296
chr2	43905898	rs142175341	G	GAGGTGGAGGTGC	1535.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr2	43921489	rs12616572	A	T	1294.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr2	43926943	rs7606783	T	A	13245.77	.	AC=2;AF=1.00;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	1/1:1,467:1.00:468
chr2	43931055	.	CTTTTTTT	C	820.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.342;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;FS=5.180;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=0.000;QD=26.48;ReadPosRankSum=2.139;SOR=0.789;set=HC	GT:AD:AF:DP	0/1:5,26:0.84:31
chr2	43931176	rs4953002	T	C	18398.77	.	AC=2;AF=1.00;AN=2;DB;DP=716;set=Intersection	GT:AD:AF:DP	1/1:0,706:1.00:706
chr2	43931321	rs4953003	G	A	5549.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr2	43937500	rs17414174	T	C	1158.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:71,53:0.43:124
chr2	43939525	rs13028613	A	G	3532.77	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:176,164:0.48:340
chr2	43947944	rs17031344	A	G	683.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	43953664	rs7574334	A	G	3135.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr2	43968024	rs12468048	C	T	887.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:37,37:0.50:74
chr2	43968316	rs12469045	G	A	1963.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:60,76:0.56:136
chr2	43973099	rs17031368	A	G	4227.77	.	AC=1;AF=0.500;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	0/1:182,201:0.52:383
chr2	43991310	rs10205936	C	T	558.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:8,20:0.71:28
chr2	43991357	rs7565517	A	C	2619.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr2	43992529	rs12478683	C	G	4125.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:141,182:0.56:323
chr2	44001139	rs17031488	C	T	1181.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:40,49:0.55:89
chr2	44001185	rs75684735	C	T	2355.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:98,105:0.52:203
chr2	44001216	rs114189357	C	T	3593.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:153,167:0.52:320
chr2	44004010	rs2288709	T	C	1696.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:95,81:0.46:176
chr2	44004099	rs17031494	T	G	609.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:17,25:0.60:42
chr2	44010620	rs3815995	G	A	1229.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:70,60:0.46:130
chr2	44021826	rs9309107	T	A	2486.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:135,115:0.46:250
chr2	44022970	rs1025447	T	C	1145.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:39,48:0.55:87
chr2	44028013	rs11556157	A	T	679.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:67,37:0.36:104
chr2	44036913	rs8302	T	C	585.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:24,27:0.53:51
chr2	44099433	rs4148217	C	A	7956.77	.	AC=1;AF=0.500;AN=2;DB;DP=725;set=Intersection	GT:AD:AF:DP	0/1:352,368:0.51:720
chr2	44099582	rs4148218	G	A	1291.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:39,51:0.57:90
chr2	44101214	rs10709506	CA	C	2156.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr2	44101394	rs4953027	A	G	1747.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr2	44101430	rs4952689	T	G	958.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:53,38:0.42:91
chr2	44101538	rs28517482	C	T	10042.77	.	AC=2;AF=1.00;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	1/1:1,376:1.00:377
chr2	44101649	rs10667526	G	GC,GCC	5674.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=204;set=Intersection	GT:AF:DP	1/2:0.50,0.50:174
chr2	44101711	rs13405698	T	C	460.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:40,24:0.38:64
chr2	44104610	rs10609687	ACT	A	274.73	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr2	44104925	rs6544718	T	C	13729.77	.	AC=2;AF=1.00;AN=2;DB;DP=509;set=Intersection	GT:AD:AF:DP	1/1:0,505:1.00:505
chr2	44116836	rs2955280	C	T	8428.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr2	44123672	rs3839036	TC	T	6662.73	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr2	44145374	rs7568481	G	T	3531.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:159,161:0.50:320
chr2	44152180	rs4952694	G	A	4450.77	.	AC=1;AF=0.500;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	0/1:228,230:0.50:458
chr2	44161854	rs143170527	G	GA	739.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.321;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=1.441;QD=8.81;ReadPosRankSum=1.126;SOR=0.596;set=HC	GT:AD:AF:DP	0/1:40,44:0.52:84
chr2	44172444	rs28394191	A	C	3796.77	.	AC=1;AF=0.500;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	0/1:214,186:0.47:400
chr2	44173422	rs7594526	T	G	1922.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:75,87:0.54:162
chr2	44175366	rs72877186	A	C	2126.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:131,98:0.43:229
chr2	44186498	rs11893433	A	C	679.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:31,28:0.47:59
chr2	44187829	rs10190161	A	C	841.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:35,42:0.55:77
chr2	44201259	rs7593842	T	C	3501.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:165,161:0.49:326
chr2	44202426	rs17031786	A	G	1687.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:83,76:0.48:159
chr2	44209477	rs6741066	C	T	3196.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:155,154:0.50:309
chr2	44445604	.	G	GT	203.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.310;ClippingRankSum=0.000;DP=105;ExcessHet=3.0103;FS=3.285;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.17;ReadPosRankSum=3.241;SOR=0.552;set=HC	GT:AD:AF:DP	0/1:71,23:0.24:94
chr2	44471313	rs372100783	GA	G	245.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.344;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=6.593;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.64;ReadPosRankSum=0.518;SOR=2.200;set=HC	GT:AD:AF:DP	0/1:18,19:0.51:37
chr2	44471326	rs143311578	CAT	C	568.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.067;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=2.774;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.10;ReadPosRankSum=0.728;SOR=1.246;set=HC	GT:AD:AF:DP	0/1:26,21:0.45:47
chr2	44471409	rs12613956	T	G	1495.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:86,76:0.47:162
chr2	44502788	rs3738985	A	C	14581.77	.	AC=2;AF=1.00;AN=2;DB;DP=543;set=Intersection	GT:AD:AF:DP	1/1:1,533:1.00:534
chr2	44508835	rs11124986	G	A	819.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:28,34:0.55:62
chr2	44512971	rs3768919	G	A	1139.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:39,49:0.56:88
chr2	44531484	rs3738984	C	T	1599.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:98,75:0.43:173
chr2	44545234	rs11348872	GT	G	1098.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.456;ClippingRankSum=0.000;DB;DP=246;ExcessHet=3.0103;FS=5.635;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.049;QD=5.11;ReadPosRankSum=0.402;SOR=0.535;set=HC	GT:AD:AF:DP	0/1:107,108:0.50:215
chr2	44547574	rs698761	G	A	4949.77	.	AC=1;AF=0.500;AN=2;DB;DP=478;set=Intersection	GT:AD:AF:DP	0/1:249,220:0.47:469
chr2	44547909	rs8886	T	C	1034.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:48,48:0.50:96
chr2	44548613	rs2241871	T	C	1422.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:86,67:0.44:153
chr2	44556298	rs2033951	T	C	1124.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:49,49:0.50:98
chr2	44565447	rs2289463	A	T	426.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:24,20:0.45:44
chr2	44566504	.	TAG	T	79.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.924;ClippingRankSum=0.000;DP=68;ExcessHet=3.0103;FS=1.877;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.63;ReadPosRankSum=0.000;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:42,7:0.14:49
chr2	44569474	rs2304769	G	A	1358.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr2	44569700	rs61004197	AAAT	A	2842.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.692;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.301;QD=20.75;ReadPosRankSum=-0.092;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:62,75:0.55:137
chr2	44569739	rs11421998	T	TA	307.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.629;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=8.873;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.60;ReadPosRankSum=-0.132;SOR=0.093;set=HC	GT:AD:AF:DP	0/1:29,26:0.47:55
chr2	44570776	rs17580226	C	T	791.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:33,33:0.50:66
chr2	44570804	rs12053381	C	A	1484.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:55,64:0.54:119
chr2	44571109	rs10514790	G	A	1253.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:63,50:0.44:113
chr2	44571849	rs17498312	G	A	223.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:15,10:0.40:25
chr2	44573624	rs698763	G	A	784.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	44573658	rs698764	T	C	514.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	44573671	rs698765	G	T	343.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	44586621	rs77060839	T	C	484.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:13,18:0.58:31
chr2	44589146	rs150365075	G	A	471.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:29,23:0.44:52
chr2	44617324	rs1085486	T	A	2928.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr2	44622226	rs74262109	G	C	127.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:3,7:0.70:10
chr2	44622256	rs1067342	A	C	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.967;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.08;ReadPosRankSum=0.967;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:6,4:0.40:10
chr2	44858687	rs10191477	T	C	4210.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr2	44942331	.	C	CAA	46.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.668;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=5.653;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.95;ReadPosRankSum=0.254;SOR=2.683;set=HC	GT:AD:AF:DP	0/1:17,7:0.29:24
chr2	44993670	rs149381178	T	C	1648.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:93,85:0.48:178
chr2	45170153	rs4953152	G	A	1359.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:60,56:0.48:116
chr2	45171842	rs338074	A	G	22345.77	.	AC=2;AF=1.00;AN=2;DB;DP=865;set=Intersection	GT:AD:AF:DP	1/1:2,857:1.00:859
chr2	45619987	rs3731945	T	A	876.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:48,41:0.46:89
chr2	45620055	rs3731946	G	A	2041.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:127,102:0.45:229
chr2	45640374	rs3755073	C	A	7650.77	.	AC=1;AF=0.500;AN=2;DB;DP=683;set=Intersection	GT:AD:AF:DP	0/1:316,360:0.53:676
chr2	45645512	rs2276655	C	T	4276.77	.	AC=1;AF=0.500;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	0/1:227,207:0.48:434
chr2	45646824	rs3213787	A	G	2425.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:101,102:0.50:203
chr2	45647043	rs3213788	C	G	4427.77	.	AC=1;AF=0.500;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	0/1:181,202:0.53:383
chr2	45773816	rs2276657	C	G	3401.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr2	45774050	rs6708810	G	A	2618.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:137,124:0.48:261
chr2	45774548	rs1865685	A	C	7367.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:1,277:1.00:278
chr2	45780962	rs3816107	C	G	6259.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr2	45789745	rs17033881	T	C	3327.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:124,149:0.55:273
chr2	45801621	rs6544833	C	G	949.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:53,40:0.43:93
chr2	45806963	rs374392017	TA	T	300.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.064;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=4.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.89;ReadPosRankSum=0.333;SOR=1.157;set=HC	GT:AD:AF:DP	0/1:112,47:0.30:159
chr2	45826526	rs35501868	CT	C	5797.73	.	AC=1;AF=0.500;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	0/1:176,172:0.49:348
chr2	45829301	rs140492069	G	GA	338.73	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:31,20:0.39:51
chr2	45879610	rs637909	A	G	2140.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr2	46205925	rs2249633	A	G	104.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:10,6:0.38:16
chr2	46207567	rs2249505	C	T	1913.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:123,94:0.43:217
chr2	46228391	rs374169133	CAT	C	403.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.317;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=4.400;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.42;ReadPosRankSum=-1.485;SOR=0.259;set=HC	GT:AD:AF:DP	0/1:91,27:0.23:118
chr2	46237446	rs1987070	C	A	2300.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:147,116:0.44:263
chr2	46378419	rs10531998	TACACACAC	T	2466.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.410;ClippingRankSum=0.000;DB;DP=257;ExcessHet=3.0103;FS=3.596;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=0.000;QD=18.97;ReadPosRankSum=0.121;SOR=0.334;set=HC	GT:AD:AF:DP	0/1:57,73:0.56:130
chr2	46524987	rs200720368	G	GC	3032.73	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:140,125:0.47:265
chr2	46583235	rs6743991	C	A	347.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:4,13:0.76:17
chr2	46583277	.	C	CCG	1832	.	AC=1;AF=0.500;AN=2;BRF=0.42;FR=0.5000;HP=9;HapScore=1;MGOF=10;MMLQ=24;MQ=60.0;NF=18;NR=5;PP=1832;QD=80.1739130435;SC=GTCCCACCCCCCCCCCTTTCC;SbPval=0.44;Source=Platypus;TC=32;TCF=26;TCR=6;TR=23;WE=46583289;WS=46583267;set=Platypus	GT:AD:AF:DP	0/1:9,23:0.72:32
chr2	46583278	rs61586942	C	CG	1403.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.775;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=14.594;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=37.94;ReadPosRankSum=1.773;SOR=2.650;set=HC	GT:AD:AF:DP	0/1:6,31:0.84:37
chr2	46583279	.	CCC	TCT	1790	.	AC=1;AF=0.500;AN=2;BRF=0.42;FR=0.5000;HP=9;HapScore=1;MGOF=10;MMLQ=24;MQ=60.0;NF=21;NR=5;PP=1790;QD=70.9026105716;SC=CCCACCCCCCCCCCTTTCCAG;SbPval=0.34;Source=Platypus;TC=41;TCF=35;TCR=6;TR=26;WE=46583289;WS=46583267;set=Platypus	GT:AD:AF:DP	0/1:15,26:0.63:41
chr2	46583279	rs142684263	C	CT	1400.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.920;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=15.033;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=36.86;ReadPosRankSum=1.582;SOR=2.724;set=HC	GT:AD:AF:DP	0/1:6,32:0.84:38
chr2	46583281	rs75984373	C	T	1409.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.530;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=12.338;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=32.79;ReadPosRankSum=1.498;SOR=2.688;set=HC	GT:AD:AF:DP	0/1:7,36:0.84:43
chr2	46583593	rs2278753	G	A	1114.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:54,49:0.48:103
chr2	46602722	rs7567582	T	C	560.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:28,24:0.46:52
chr2	46603671	rs7557402	C	G	1911.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:157,103:0.40:260
chr2	46605659	rs7571218	A	G	127.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.456;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=4.393;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.81;ReadPosRankSum=1.069;SOR=0.069;set=HC	GT:AD:AF:DP	0/1:14,8:0.36:22
chr2	46605954	rs7598371	G	C	684.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:61,37:0.38:98
chr2	46608542	rs13006131	C	G	1052.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:36,40:0.53:76
chr2	46739157	rs3814045	A	G	2282.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:145,119:0.45:264
chr2	46771134	rs6714484	G	C	2572.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:67,97:0.59:164
chr2	46799852	rs1451153	G	T	520.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:32,24:0.43:56
chr2	46818992	rs17818315	C	T	717.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:94,42:0.31:136
chr2	46819815	rs2305350	A	G	1433.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:63,65:0.51:128
chr2	46839477	rs1824050	T	C	133.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.290;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.18;ReadPosRankSum=-0.646;SOR=0.540;set=HC	GT:AD:AF:DP	0/1:22,10:0.31:32
chr2	46842410	rs2242033	A	G	336.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:24,18:0.43:42
chr2	46845849	rs2122715	A	G	719.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:38,37:0.49:75
chr2	46851180	rs11333819	AT	A	581.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.537;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=8.994;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.06;ReadPosRankSum=0.932;SOR=0.088;set=HC	GT:AD:AF:DP	0/1:12,17:0.59:29
chr2	46851183	rs56198684	T	A	590.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.697;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=8.994;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.37;ReadPosRankSum=0.621;SOR=0.088;set=HC	GT:AD:AF:DP	0/1:12,17:0.59:29
chr2	46986416	rs6738426	A	G	4722.77	.	AC=1;AF=0.500;AN=2;DB;DP=495;set=Intersection	GT:AD:AF:DP	0/1:249,236:0.49:485
chr2	46987300	rs3768720	T	G	1159.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:60,52:0.46:112
chr2	47081092	rs11687883	C	T	321.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:12,17:0.59:29
chr2	47081196	rs61507430	C	G	501.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:39,28:0.42:67
chr2	47083030	rs3835756	ATG	A	855.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.331;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=0.000;QD=10.31;ReadPosRankSum=0.572;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:50,33:0.40:83
chr2	47083041	rs200683836	TA	T	469.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.594;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=1.786;MLEAC=1;MLEAF=0.500;MQ=60.41;MQRankSum=2.518;QD=4.65;ReadPosRankSum=0.146;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:61,40:0.40:101
chr2	47083044	rs1079	A	T	3065.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.701;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=2.597;MLEAC=2;MLEAF=1.000;MQ=60.42;MQRankSum=0.383;QD=30.06;ReadPosRankSum=1.040;SOR=0.235;set=HC	GT:AD:AF:DP	1/1:3,99:0.97:102
chr2	47085398	rs2278711	C	T	1057.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:34,45:0.57:79
chr2	47132945	rs7600882	G	T	577.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:23,24:0.51:47
chr2	47168569	.	T	C	893.77	.	AC=1;AF=0.500;AN=2;DP=85;set=Intersection	GT:AD:AF:DP	0/1:42,41:0.49:83
chr2	47177787	rs2033533	G	T	321.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:20,14:0.41:34
chr2	47185438	rs4952856	G	A	4961.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr2	47201797	rs6745836	A	T	1703.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr2	47201991	rs67758600	CT	C	1046.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	47277043	rs2304287	C	G	942.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:50,40:0.44:90
chr2	47277207	rs3816066	CA	AG	8068.77	.	AC=1;AF=0.500;AN=2;DB;DP=481;JOINED;set=Intersection	GT:AD:AF:DP	0/1:263,213:0.45:476
chr2	47278823	rs17482356	C	T	117.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:8,6:0.43:14
chr2	47287966	rs142959785	G	A	5318.77	.	AC=1;AF=0.500;AN=2;DB;DP=466;set=Intersection	GT:AD:AF:DP	0/1:212,251:0.54:463
chr2	47301029	rs3739099	A	G	972.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:43,45:0.51:88
chr2	47314048	rs2280647	T	C	540.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.151;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.03;ReadPosRankSum=0.801;SOR=1.508;set=HC	GT:AD:AF:DP	0/1:16,14:0.47:30
chr2	47314052	rs1474394	T	C	574.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.029;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=3.153;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.54;ReadPosRankSum=-0.324;SOR=1.814;set=HC	GT:AD:AF:DP	0/1:15,16:0.52:31
chr2	47348347	rs1880583	C	T	5986.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr2	47357458	rs58184321	A	G	12713.77	.	AC=2;AF=1.00;AN=2;DB;DP=478;set=Intersection	GT:AD:AF:DP	1/1:0,464:1.00:464
chr2	47357564	rs59073987	A	T	899.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:35,35:0.50:70
chr2	47380145	rs17036300	T	C	1113.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:65,56:0.46:121
chr2	47380203	rs815809	T	C	1204.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:49,60:0.55:109
chr2	47380305	rs6749284	C	T	449.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:20,19:0.49:39
chr2	47382214	rs815806	C	G	4633.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr2	47387989	rs370967655	CAAAAA	C	87.70	.	AC=1;AF=0.500;AN=2;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=21.93;SOR=0.916;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr2	47399601	rs4953472	A	G	1483.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:54,65:0.55:119
chr2	47403383	rs11842	G	T	1177.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:49,48:0.49:97
chr2	47601106	rs1126497	T	C	4464.77	.	AC=1;AF=0.500;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	0/1:201,214:0.52:415
chr2	47605097	rs28609437	C	T	228.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:15,12:0.44:27
chr2	47612224	rs7584256	C	T	1060.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:75,47:0.39:122
chr2	47613870	rs1421	T	C	305.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:12,17:0.59:29
chr2	47630213	rs2303425	T	C	292.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:11,13:0.54:24
chr2	47630550	rs2303426	C	G	1158.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:51,54:0.51:105
chr2	47639511	rs182754158	T	C	958.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:28,39:0.58:67
chr2	47656801	rs2347794	G	A	931.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:43,40:0.48:83
chr2	47672569	rs1981929	G	A	1239.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr2	47690404	rs3771278	T	C	1002.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.479;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=3.763;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.71;ReadPosRankSum=2.170;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:33,27:0.45:60
chr2	47690408	rs3771279	A	G	1005.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.235;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=1.085;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.65;ReadPosRankSum=2.026;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:30,27:0.47:57
chr2	47690411	rs3771280	T	C	1014.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.219;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.15;ReadPosRankSum=0.931;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:26,27:0.51:53
chr2	47693706	rs3732182	G	T	355.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:20,16:0.44:36
chr2	47693788	rs12998837	A	T	1072.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:65,58:0.47:123
chr2	47693959	rs3732183	G	A	128.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:11,7:0.39:18
chr2	47698308	rs3764959	A	G	165.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:14,9:0.39:23
chr2	47739551	rs2303424	A	G	1763.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:70,83:0.54:153
chr2	47748292	rs2278139	A	G	2922.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:147,136:0.48:283
chr2	48010488	rs1042821	G	A	6863.77	.	AC=1;AF=0.500;AN=2;DB;DP=655;set=Intersection	GT:AD:AF:DP	0/1:321,324:0.50:645
chr2	48010558	rs1042820	C	A	3219.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:147,147:0.50:294
chr2	48010654	rs55927047	C	G	1306.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.057;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=1.626;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.07;ReadPosRankSum=0.598;SOR=0.540;set=HC	GT:AD:AF:DP	0/1:43,57:0.57:100
chr2	48018081	rs1800932	A	G	3336.77	.	AC=1;AF=0.500;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	0/1:177,168:0.49:345
chr2	48018314	rs3136282	T	A	676.73	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:31,27:0.47:58
chr2	48022900	rs3136316	A	G	1101.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	48022981	rs1800934	G	T	1030.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:82,49:0.37:131
chr2	48023115	rs1800935	T	C	3760.77	.	AC=1;AF=0.500;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	0/1:185,184:0.50:369
chr2	48030458	rs2072447	G	C	3094.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr2	48030838	rs2020911	A	T	2588.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:91,113:0.55:204
chr2	48032740	rs267608104	A	AT	640.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.342;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=0.791;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.21;ReadPosRankSum=0.408;SOR=0.545;set=HC	GT:AD:AF:DP	0/1:69,54:0.44:123
chr2	48032874	rs2234731	ACTAT	A	3234.73	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr2	48032937	rs3136359	T	C	1009.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr2	48033551	rs3136367	C	G	15994.77	.	AC=2;AF=1.00;AN=2;DB;DP=583;set=Intersection	GT:AD:AF:DP	1/1:0,573:1.00:573
chr2	48033890	rs267608137	CT	C	1512.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;ClippingRankSum=0.000;DB;DP=297;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.683;QD=5.98;ReadPosRankSum=0.501;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:109,144:0.57:253
chr2	48040904	rs373765859	G	GA	8052.73	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr2	48046012	rs374445177	TA	T	510.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.777;ClippingRankSum=0.000;DB;DP=307;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.000;QD=1.80;ReadPosRankSum=2.838;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:205,79:0.28:284
chr2	48066232	rs368463059	CT	C	288.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.442;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=2.125;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=0.953;QD=6.42;ReadPosRankSum=-3.293;SOR=0.272;set=HC	GT:AD:AF:DP	0/1:22,23:0.51:45
chr2	48132541	.	CCCCG	C	169.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.268;ClippingRankSum=-0.000;DP=15;ExcessHet=3.0103;FS=18.195;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.14;ReadPosRankSum=-0.775;SOR=2.199;set=HC	GT:AD:AF:DP	0/1:6,6:0.50:12
chr2	48132561	.	G	GCCCGCCCCGGCCTCCCTT	144.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.420;ClippingRankSum=-0.000;DP=18;ExcessHet=3.0103;FS=16.782;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.34;ReadPosRankSum=1.445;SOR=3.589;set=HC	GT:AD:AF:DP	0/1:9,5:0.36:14
chr2	48573895	rs79073127	G	C	4533.77	.	AC=1;AF=0.500;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	0/1:238,200:0.46:438
chr2	48589683	rs34242257	G	A	312.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:28,14:0.33:42
chr2	48722755	rs4443044	T	C	3541.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr2	48725610	rs3811519	C	T	1744.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr2	48734576	rs6716341	G	A	4041.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr2	48738687	rs4528813	G	C	3806.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr2	48807796	rs17039250	A	C	5348.77	.	AC=1;AF=0.500;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	0/1:209,243:0.54:452
chr2	48807976	rs3828340	T	C	7637.77	.	AC=1;AF=0.500;AN=2;DB;DP=722;set=Intersection	GT:AD:AF:DP	0/1:364,353:0.49:717
chr2	48808152	rs940389	G	C	5563.77	.	AC=1;AF=0.500;AN=2;DB;DP=578;set=Intersection	GT:AD:AF:DP	0/1:315,255:0.45:570
chr2	48808594	rs3749142	C	T	8257.77	.	AC=1;AF=0.500;AN=2;DB;DP=739;set=Intersection	GT:AD:AF:DP	0/1:352,380:0.52:732
chr2	48808882	rs3749144	T	A	2233.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:104,100:0.49:204
chr2	48808898	rs3749145	C	T	2214.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:88,101:0.53:189
chr2	48809593	rs3792234	G	T	3742.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:154,175:0.53:329
chr2	48809756	rs3792235	T	C	1363.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:57,56:0.50:113
chr2	48822381	rs2140551	G	A	2736.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:119,128:0.52:247
chr2	48822540	rs7574549	T	C	2416.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:108,110:0.50:218
chr2	48844968	rs2293269	C	G	7366.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:2,255:0.99:257
chr2	48847918	rs10634616	G	GAATA,GAATAAATA	1310.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=39;set=Intersection	GT:AF:DP	1/2:0.50,0.47:32
chr2	48848515	rs17037472	G	C	965.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:38,37:0.49:75
chr2	48873978	rs10432667	A	G	6899.77	.	AC=1;AF=0.500;AN=2;DB;DP=651;set=Intersection	GT:AD:AF:DP	0/1:320,316:0.50:636
chr2	48898798	rs3920390	T	A	5735.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:1,219:1.00:220
chr2	48906625	rs1965508	T	C	3434.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr2	48915871	rs11125179	A	G	13883.77	.	AC=2;AF=1.00;AN=2;DB;DP=527;set=Intersection	GT:AD:AF:DP	1/1:0,512:1.00:512
chr2	48921375	rs2293275	T	C	3392.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr2	48925746	rs6755901	C	T	1530.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:96,73:0.43:169
chr2	48925986	rs70946824	AT	A	186.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.087;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.472;QD=3.22;ReadPosRankSum=-2.500;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:37,21:0.36:58
chr2	48952701	rs6545063	C	G	423.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:22,17:0.44:39
chr2	48956431	rs11892719	T	A	1339.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:68,66:0.49:134
chr2	48982622	rs4073366	C	G	176.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.592;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.52;ReadPosRankSum=0.582;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:20,12:0.38:32
chr2	48982755	.	G	GGCTGCA	297.73	.	AC=1;AF=0.500;AN=2;DP=36;set=Intersection	GT:AD:AF:DP	0/1:19,10:0.34:29
chr2	49003458	rs62135453	C	T	795.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:58,41:0.41:99
chr2	49189921	rs6166	C	T	7751.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr2	49191041	rs6165	C	T	3625.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr2	49215977	rs2072488	G	A	1879.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr2	49216284	rs2072487	C	T	894.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	49217916	rs2072486	T	G	941.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	49241849	rs6708637	G	A	609.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:21,27:0.56:48
chr2	49244559	rs2091787	A	G	7293.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr2	49381585	rs1394205	C	T	649.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	49510173	rs7578654	A	C	9815.77	.	AC=2;AF=1.00;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	1/1:0,376:1.00:376
chr2	50170729	rs1345562	G	C	2226.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.49;SOR=1.952;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr2	50201110	rs9636391	A	G	6346.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr2	50201255	rs138066456	G	A	3239.77	.	AC=1;AF=0.500;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	0/1:184,161:0.47:345
chr2	50201383	rs4971883	G	A	1826.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr2	50434759	rs1715984	C	G	2809.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.26;SOR=0.830;set=HC	GT:AD:AF:DP	1/1:0,107:1.00:107
chr2	50574038	rs13413205	C	A	1001.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.141;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.54;ReadPosRankSum=0.862;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:50,45:0.47:95
chr2	50692459	rs12713101	T	A	1555.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr2	50692819	rs10168838	T	G	1400.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr2	50693504	rs75315267	AAC	A	5502.73	.	AC=2;AF=1.00;AN=2;DB;DP=126;MQ=60.09;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr2	50699305	rs2075234	T	A	1320.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr2	50733860	rs7584062	A	G	3917.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.79;SOR=1.543;set=HC	GT:AD:AF:DP	1/1:0,141:1.00:141
chr2	50758657	rs2066948	T	C	1994.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr2	50780219	rs13429627	T	G	869.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:29,35:0.55:64
chr2	50966283	rs1546667	C	T	318.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:35,19:0.35:54
chr2	51148872	rs36106628	T	A	619.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.152;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=1.136;MLEAC=1;MLEAF=0.500;MQ=59.64;MQRankSum=-0.852;QD=11.92;ReadPosRankSum=-1.355;SOR=0.442;set=HC	GT:AD:AF:DP	0/1:23,29:0.56:52
chr2	51191244	rs17572798	C	T	205.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:16,10:0.38:26
chr2	51206342	rs35296842	C	G	2209.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:102,96:0.48:198
chr2	52929596	rs6711444	C	G	226.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr2	52929680	rs6726779	T	C	1267.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:27,57:0.68:84
chr2	52929780	rs6726935	T	G	2265.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:94,108:0.53:202
chr2	52929844	rs6545299	G	A	1340.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:53,64:0.55:117
chr2	53956838	rs10490467	A	G	1049.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:63,47:0.43:110
chr2	54023247	rs72502136	GT	G	63.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.809;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=9.328;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.90;ReadPosRankSum=-0.239;SOR=0.045;set=HC	GT:AD:AF:DP	0/1:14,8:0.36:22
chr2	54024626	rs2692514	C	T	574.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:33,30:0.48:63
chr2	54035374	rs2692519	A	G	845.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:44,42:0.49:86
chr2	54041983	rs2542571	G	T	1420.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:109,71:0.39:180
chr2	54093816	.	T	A	378.77	.	AC=1;AF=0.500;AN=2;DP=24;set=Intersection	GT:AD:AF:DP	0/1:8,16:0.67:24
chr2	54114967	rs805399	G	A	2804.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:136,131:0.49:267
chr2	54115904	rs805400	A	G	5300.77	.	AC=1;AF=0.500;AN=2;DB;DP=512;set=Intersection	GT:AD:AF:DP	0/1:257,254:0.50:511
chr2	54116003	rs805401	C	T	2468.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:102,117:0.53:219
chr2	54120025	rs805408	A	T	2955.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:164,146:0.47:310
chr2	54120204	rs805409	A	G	415.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:15,16:0.52:31
chr2	54120820	rs805412	G	A	843.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:53,43:0.45:96
chr2	54122956	rs698856	A	G	1189.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:62,56:0.47:118
chr2	54122984	rs698857	C	T	535.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:39,25:0.39:64
chr2	54125258	rs805416	T	C	819.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:29,30:0.51:59
chr2	54125495	rs805417	T	C	814.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:52,49:0.49:101
chr2	54127041	rs805423	C	T	2536.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:107,124:0.54:231
chr2	54133744	rs805316	T	C	1625.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:114,86:0.43:200
chr2	54134090	rs74955566	G	T	247.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:14,12:0.46:26
chr2	54135429	rs805319	G	C	538.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:51,30:0.37:81
chr2	54144194	rs10558627	TTAAG	T	247.73	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:3,7:0.70:10
chr2	54144448	rs805325	T	C	257.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:20,13:0.39:33
chr2	54152927	rs2302879	T	C	677.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:35,28:0.44:63
chr2	54153284	rs62139281	A	G	663.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:29,28:0.49:57
chr2	54155240	rs805349	A	G	2021.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:101,100:0.50:201
chr2	54158957	rs805352	C	T	2129.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:109,91:0.46:200
chr2	54161885	rs805357	G	T	1537.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:78,74:0.49:152
chr2	54175440	rs805445	T	C	1551.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:100,78:0.44:178
chr2	54343012	rs7573491	C	A	1243.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:51,53:0.51:104
chr2	54362437	rs2357954	T	C	305.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:14,14:0.50:28
chr2	54494370	rs865816	A	G	2657.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr2	54562012	rs55714450	C	A	2439.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr2	54587596	rs2280718	C	T	7108.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr2	54608832	rs78018084	C	G	642.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:28,26:0.48:54
chr2	54839276	rs3796014	A	G	4741.77	.	AC=1;AF=0.500;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	0/1:198,223:0.53:421
chr2	54844926	rs7569127	T	G	1191.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:46,48:0.51:94
chr2	54848728	rs12713274	A	G	509.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:15,21:0.58:36
chr2	54855137	rs2971887	T	C	2151.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:93,97:0.51:190
chr2	54855454	rs17046036	G	A	1066.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:25,39:0.61:64
chr2	54858664	rs2229503	C	T	5040.77	.	AC=1;AF=0.500;AN=2;DB;DP=482;set=Intersection	GT:AD:AF:DP	0/1:247,229:0.48:476
chr2	54877146	rs3739109	A	G	940.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:38,44:0.54:82
chr2	54882381	rs2271329	G	A	4005.77	.	AC=1;AF=0.500;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	0/1:169,193:0.53:362
chr2	54884870	rs966003	C	T	289.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:17,14:0.45:31
chr2	55040426	rs2631840	A	G	9879.77	.	AC=2;AF=1.00;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	1/1:2,381:0.99:383
chr2	55043798	rs2578711	G	C	189.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:10,8:0.44:18
chr2	55044108	rs190459032	C	A	1287.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:66,60:0.48:126
chr2	55071101	rs72020199	TTG	T	1282.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.848;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=0.394;QD=27.89;ReadPosRankSum=-1.511;SOR=1.739;set=HC	GT:AD:AF:DP	0/1:7,39:0.85:46
chr2	55077048	rs181858905	A	G	730.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:30,29:0.49:59
chr2	55077061	rs12713278	A	G	1023.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:34,37:0.52:71
chr2	55080703	rs35619447	A	C	347.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:17,17:0.50:34
chr2	55093842	rs1961245	G	A	1791.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:97,87:0.47:184
chr2	55121930	rs998230	C	G	1370.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:27,52:0.66:79
chr2	55122589	rs6545454	A	G	4828.77	.	AC=1;AF=0.500;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	0/1:221,224:0.50:445
chr2	55126730	rs6545455	C	G	970.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:35,37:0.51:72
chr2	55138272	rs2304688	G	A	151.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr2	55155672	rs10164886	A	G	9033.77	.	AC=1;AF=0.500;AN=2;DB;DP=966;set=Intersection	GT:AD:AF:DP	0/1:502,454:0.47:956
chr2	55176112	rs13394146	C	T	8719.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr2	55180965	rs4671998	G	A	1820.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr2	55181022	.	TA	T	260.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.876;ClippingRankSum=0.000;DP=149;ExcessHet=3.0103;FS=7.368;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.93;ReadPosRankSum=0.632;SOR=0.206;set=HC	GT:AD:AF:DP	0/1:88,47:0.35:135
chr2	55186229	rs12623902	T	C	1824.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:86,84:0.49:170
chr2	55186394	rs17346629	A	C	1805.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:74,88:0.54:162
chr2	55187295	rs35279349	G	A	862.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:64,44:0.41:108
chr2	55187297	rs58866010	A	AG	4052.73	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr2	55201038	rs2255026	C	T	2149.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr2	55214618	rs2580769	A	C	3544.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr2	55214912	rs2580770	C	G	1660.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr2	55258704	rs10173203	C	G	2864.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:135,129:0.49:264
chr2	55404925	rs6545477	C	T	868.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:41,41:0.50:82
chr2	55405037	rs75442422	T	A	202.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:7,9:0.56:16
chr2	55407754	rs6716066	C	T	15473.77	.	AC=2;AF=1.00;AN=2;DB;DP=599;set=Intersection	GT:AD:AF:DP	1/1:0,583:1.00:583
chr2	55407935	rs10183953	G	A	3045.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr2	55408785	rs75073607	C	G	3946.77	.	AC=1;AF=0.500;AN=2;DB;DP=453;set=Intersection	GT:AD:AF:DP	0/1:243,200:0.45:443
chr2	55436488	rs139842520	GA	G	198.73	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:13,13:0.50:26
chr2	55436934	rs9677948	G	A	1829.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:84,84:0.50:168
chr2	55439963	rs2118283	C	A	2942.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr2	55449318	rs4435493	T	C	1082.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:35,47:0.57:82
chr2	55449464	rs17852670	T	C	5158.77	.	AC=1;AF=0.500;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	0/1:217,239:0.52:456
chr2	55470115	rs11357	C	T	828.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:47,39:0.45:86
chr2	55471382	rs61109509	T	C	2202.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:103,97:0.48:200
chr2	55471407	rs2589083	T	C	3067.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr2	55473386	rs3833559	CAT	C	4902.73	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:143,130:0.48:273
chr2	55473681	rs2589081	A	C	3586.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr2	55489629	rs2589093	T	C	1981.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:59,78:0.57:137
chr2	55490819	rs1056445	G	T	3503.77	.	AC=1;AF=0.500;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	0/1:202,177:0.47:379
chr2	55518742	rs2249856	T	C	1105.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:63,51:0.45:114
chr2	55522422	rs2589110	A	G	4065.77	.	AC=1;AF=0.500;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	0/1:186,182:0.49:368
chr2	55527108	rs1545121	G	A	3685.77	.	AC=1;AF=0.500;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	0/1:201,176:0.47:377
chr2	55528257	rs2576699	A	C	1063.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:59,49:0.45:108
chr2	55528514	rs2589117	A	G	214.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:3,9:0.75:12
chr2	55535828	rs13407931	T	G	1538.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:23,53:0.70:76
chr2	55559651	rs368125112	CA	C	124.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.117;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=1.332;QD=2.35;ReadPosRankSum=1.294;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:33,20:0.38:53
chr2	55566531	rs12621734	A	C	638.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:15,24:0.62:39
chr2	55566538	rs71821845	CTATT	C	952.73	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:20,25:0.56:45
chr2	55576634	rs2589090	C	T	3571.77	.	AC=1;AF=0.500;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	0/1:194,178:0.48:372
chr2	55582601	rs5831355	T	TTTGACACA	1174.73	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:39,31:0.44:70
chr2	55582684	rs1437394	A	T	2706.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:143,134:0.48:277
chr2	55589364	rs13019339	G	A	1199.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:21,49:0.70:70
chr2	55589434	rs3111412	T	A	2439.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:76,111:0.59:187
chr2	55591017	rs114386931	T	C	1523.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:80,74:0.48:154
chr2	55599655	rs3111411	G	A	932.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:68,49:0.42:117
chr2	55749085	rs12992408	T	G	296.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:7,14:0.67:21
chr2	55760844	rs9808405	A	T	232.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.393;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.76;ReadPosRankSum=1.158;SOR=0.346;set=HC	GT:AD:AF:DP	0/1:15,15:0.50:30
chr2	55760940	rs4671248	G	T	1661.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:84,73:0.46:157
chr2	55765882	rs35188812	CT	C	68.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.934;ClippingRankSum=0.000;DB;DP=307;ExcessHet=3.0103;FS=1.268;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=2.099;QD=0.23;ReadPosRankSum=-0.525;SOR=0.580;set=HC	GT:AD:AF:DP	0/1:241,53:0.18:294
chr2	55771050	rs3816489	C	G	2277.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:101,98:0.49:199
chr2	55771161	rs1045910	A	G	7227.77	.	AC=1;AF=0.500;AN=2;DB;DP=779;set=Intersection	GT:AD:AF:DP	0/1:414,360:0.47:774
chr2	55804281	rs3791654	G	A	388.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.384;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.43;ReadPosRankSum=0.681;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:15,19:0.56:34
chr2	55805440	rs2903704	T	C	2971.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr2	55806924	rs67834644	CAT	C	1519.73	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:39,41:0.51:80
chr2	55808969	rs1975486	C	T	527.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:17,25:0.60:42
chr2	55812061	rs4312532	A	G	1925.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:78,89:0.53:167
chr2	55842424	rs70954138	CTTTT	C	310.73	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:10,9:0.47:19
chr2	55867938	rs34679603	A	G	253.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:10,13:0.57:23
chr2	55871932	rs71393504	AT	A	83.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.021;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=1.115;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.03;ReadPosRankSum=0.234;SOR=0.985;set=HC	GT:AD:AF:DP	0/1:61,20:0.25:81
chr2	55874657	.	A	AT	91.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.755;ClippingRankSum=0.000;DP=173;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=2.785;QD=0.78;ReadPosRankSum=0.154;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:91,26:0.22:117
chr2	55887176	rs7592219	T	C	344.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:5,16:0.76:21
chr2	55889062	rs782604	G	A	440.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:39,22:0.36:61
chr2	55894090	rs13009649	A	G	736.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:14,29:0.67:43
chr2	55898929	rs2627771	A	G	123.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.719;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.63;ReadPosRankSum=0.986;SOR=0.382;set=HC	GT:AD:AF:DP	0/1:14,8:0.36:22
chr2	55899228	rs782631	A	T	579.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:26,29:0.53:55
chr2	56102019	rs55778215	T	C	3905.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr2	56102061	rs56280335	GA	G	5095.73	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:8,250:0.97:258
chr2	56102281	rs55867135	T	C	759.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.365;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.25;ReadPosRankSum=1.390;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:31,31:0.50:62
chr2	56103682	rs17047287	T	C	4171.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr2	56108689	rs11680866	G	A	1467.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:2,51:0.96:53
chr2	56108882	rs3748959	T	C	8989.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:1,343:1.00:344
chr2	56216052	rs10865292	G	A	12536.77	.	AC=2;AF=1.00;AN=2;DB;DP=498;set=Intersection	GT:AD:AF:DP	1/1:0,490:1.00:490
chr2	56411817	rs35587531	C	T	3887.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr2	56603118	rs72803075	C	G	2634.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:162,122:0.43:284
chr2	58275666	rs986512	G	A	1200.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:72,61:0.46:133
chr2	58381785	rs848294	T	C	592.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:41,29:0.41:70
chr2	58387000	rs3732136	C	T	322.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:12,14:0.54:26
chr2	58388696	rs848291	A	G	4635.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:1,180:0.99:181
chr2	58390538	rs10445895	T	C	6764.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.739;ClippingRankSum=0.000;DB;DP=349;ExcessHet=3.0103;FS=1.270;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.55;ReadPosRankSum=0.687;SOR=0.623;set=HC	GT:AD:AF:DP	0/1:172,174:0.50:346
chr2	58390547	rs10445896	G	A	7037.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.594;ClippingRankSum=0.000;DB;DP=380;ExcessHet=3.0103;FS=0.372;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.62;ReadPosRankSum=0.072;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:187,191:0.51:378
chr2	58392789	rs848288	T	C	3091.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:138,146:0.51:284
chr2	58392797	rs148383677	TTTA	T	6006.73	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:159,158:0.50:317
chr2	58453843	.	G	GA	522.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.598;ClippingRankSum=0.000;DP=75;ExcessHet=3.0103;FS=2.236;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.16;ReadPosRankSum=0.426;SOR=0.387;set=HC	GT:AD:AF:DP	0/1:34,39:0.53:73
chr2	58453930	rs79588315	A	G	529.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:35,28:0.44:63
chr2	58456755	rs56246409	A	G	143.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:5,7:0.58:12
chr2	60614572	rs243080	G	A	4770.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr2	60687959	rs7569946	A	G	14269.77	.	AC=2;AF=1.00;AN=2;DB;DP=508;set=Intersection	GT:AD:AF:DP	1/1:0,504:1.00:504
chr2	60689522	rs61748090	G	A	6713.77	.	AC=1;AF=0.500;AN=2;DB;DP=691;set=Intersection	GT:AD:AF:DP	0/1:353,332:0.48:685
chr2	60768978	rs2665668	G	A	880.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	60773035	rs45579331	T	G	2248.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:125,112:0.47:237
chr2	60780421	.	GGGC	G	210.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.694;ClippingRankSum=0.000;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.29;ReadPosRankSum=-0.742;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:77,15:0.16:92
chr2	61008036	rs3845814	C	T	3371.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr2	61010459	rs11407857	C	CTT	43.75	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.370;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=4.228;MLEAC=1;MLEAF=0.500;MQ=60.72;MQRankSum=0.253;QD=4.37;ReadPosRankSum=1.501;SOR=2.833;set=HC	GT:AD:AF:DP	0/1:2,8:0.80:10
chr2	61118739	rs10185028	A	G	357.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:27,17:0.39:44
chr2	61121492	rs842644	G	A	1056.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	61128268	rs6707682	G	A	411.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.837;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=4.519;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=1.001;QD=8.58;ReadPosRankSum=0.512;SOR=1.532;set=HC	GT:AD:AF:DP	0/1:23,25:0.52:48
chr2	61128284	rs2115592	T	C	1177.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.28;QD=33.65;SOR=2.115;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr2	61145498	rs149570046	AT	A	52.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.793;ClippingRankSum=0.000;DB;DP=229;ExcessHet=3.0103;FS=0.770;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.25;ReadPosRankSum=-0.399;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:172,37:0.18:209
chr2	61175312	rs12479056	T	C	14460.77	.	AC=2;AF=1.00;AN=2;DB;DP=540;set=Intersection	GT:AD:AF:DP	1/1:1,535:1.00:536
chr2	61180288	rs76770165	C	T	920.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:62,47:0.43:109
chr2	61187478	.	C	CA	162.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.506;ClippingRankSum=0.000;DP=69;ExcessHet=3.0103;FS=2.724;MLEAC=1;MLEAF=0.500;MQ=60.47;MQRankSum=1.674;QD=3.19;ReadPosRankSum=-1.084;SOR=1.151;set=HC	GT:AD:AF:DP	0/1:32,19:0.37:51
chr2	61191995	rs55776317	G	C	429.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:19,17:0.47:36
chr2	61235855	rs1182688	C	A	526.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:13,23:0.64:36
chr2	61238871	.	G	GA	165.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.977;ClippingRankSum=0.000;DP=100;ExcessHet=3.0103;FS=1.130;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.839;QD=1.78;ReadPosRankSum=-0.472;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:69,24:0.26:93
chr2	61275771	rs74350038	C	G	4779.77	.	AC=1;AF=0.500;AN=2;DB;DP=479;set=Intersection	GT:AD:AF:DP	0/1:239,235:0.50:474
chr2	61298684	.	C	CA	241.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.431;ClippingRankSum=0.000;DP=110;ExcessHet=3.0103;FS=4.048;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.319;QD=2.81;ReadPosRankSum=1.252;SOR=0.280;set=HC	GT:AD:AF:DP	0/1:58,28:0.33:86
chr2	61300556	.	C	CT	311.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.232;ClippingRankSum=0.000;DP=231;ExcessHet=3.0103;FS=2.338;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.895;QD=1.44;ReadPosRankSum=0.850;SOR=0.969;set=HC	GT:AD:AF:DP	0/1:170,47:0.22:217
chr2	61304002	rs1729657	A	G	1982.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr2	61304271	rs1729659	A	G	7911.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr2	61308517	rs1177295	A	G	1771.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr2	61308569	.	AT	A	208.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.516;ClippingRankSum=0.000;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.667;QD=2.37;ReadPosRankSum=-0.972;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:58,30:0.34:88
chr2	61349446	rs1177284	G	A	1083.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr2	61384906	rs7558954	T	C	1011.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr2	61385100	rs1665258	G	A	6431.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.17;SOR=0.820;set=HC	GT:AD:AF:DP	1/1:0,149:1.00:149
chr2	61385105	rs1729671	G	C	6253.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.99;SOR=0.895;set=HC	GT:AD:AF:DP	1/1:0,139:1.00:139
chr2	61385248	rs1177309	A	G	535.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	61389737	rs1729674	T	G	5196.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr2	61389799	rs1729673	G	A	2596.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr2	61404514	rs112583316	G	A	407.78	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:1,18:0.95:19
chr2	61412559	rs777585	C	T	1001.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	61413723	rs1809028	A	G	4794.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr2	61415492	rs14170	A	G	3419.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr2	61417617	rs777591	A	G	5717.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr2	61522123	rs13014347	T	C	3301.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr2	61528470	rs184965843	C	A	1987.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:141,101:0.42:242
chr2	61538602	rs141750762	G	GAAAAGAGAAAGAAAAAGAAAA	3208.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=63.58;QD=64.17;SOR=4.493;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr2	61552411	.	T	TAA	213.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.186;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=1.625;QD=4.86;ReadPosRankSum=0.612;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:27,17:0.39:44
chr2	61566824	rs369130574	GA	G	159.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.609;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.386;QD=2.25;ReadPosRankSum=0.440;SOR=0.790;set=HC	GT:AD:AF:DP	0/1:46,25:0.35:71
chr2	61575308	rs6722430	A	G	14165.77	.	AC=2;AF=1.00;AN=2;DB;DP=531;set=Intersection	GT:AD:AF:DP	1/1:0,526:1.00:526
chr2	61576517	rs811378	G	A	4955.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr2	61622251	rs3213951	C	T	2029.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr2	61622374	.	T	TA	132.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.662;ClippingRankSum=0.000;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.04;ReadPosRankSum=0.376;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:49,16:0.25:65
chr2	61713209	rs35844473	GGAAAATC	G	2879.73	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:1,70:0.99:71
chr2	61713218	rs60155512	T	A	2887.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.263;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=42.47;ReadPosRankSum=-0.834;SOR=4.804;set=HC	GT:AD:AF:DP	1/1:1,67:0.99:68
chr2	61713218	.	TGT	AGG	2873	.	AC=2;AF=1.00;AN=2;BRF=0.3;FR=1.0000;HP=1;HapScore=1;MGOF=1;MMLQ=28;MQ=60.0;NF=1;NR=44;PP=2873;QD=20;SC=AGGAAAATCTTGTGTTTGTAT;SbPval=0.61;Source=Platypus;TC=47;TCF=1;TCR=46;TR=45;WE=61713228;WS=61713199;set=Platypus	GT:AD:AF:DP	1/1:2,45:0.96:47
chr2	61713220	rs61235340	T	G	2791.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.078;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=42.95;ReadPosRankSum=-0.797;SOR=4.712;set=HC	GT:AD:AF:DP	1/1:1,64:0.98:65
chr2	61719945	rs41281521	A	G	2965.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:117,127:0.52:244
chr2	61722519	rs74392163	G	GA	391.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	61726050	.	T	TA	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.934;ClippingRankSum=0.000;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.50;ReadPosRankSum=0.739;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:64,13:0.17:77
chr2	61729258	rs2305155	A	G	5882.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.58;SOR=1.089;set=HC	GT:AD:AF:DP	1/1:0,135:1.00:135
chr2	61729268	rs2305156	T	C	6134.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.51;SOR=0.960;set=HC	GT:AD:AF:DP	1/1:0,141:1.00:141
chr2	61749690	rs3732171	C	T	2669.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr2	61749716	rs3732170	C	T	3125.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr2	61761169	rs1446532	G	A	746.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	62053878	rs11392751	G	GA	311.73	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	62063093	rs11299120	TA	T	633.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.940;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=4.242;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=0.660;QD=7.20;ReadPosRankSum=-0.486;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:34,54:0.61:88
chr2	62065851	rs17513666	C	T	1531.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:105,75:0.42:180
chr2	62066927	rs4672457	A	G	9042.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr2	62067433	rs17513722	T	C	8027.77	.	AC=1;AF=0.500;AN=2;DB;DP=681;set=Intersection	GT:AD:AF:DP	0/1:302,372:0.55:674
chr2	62069358	rs11125895	T	C	3770.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:144,179:0.55:323
chr2	62069528	rs11125896	C	T	2586.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:111,119:0.52:230
chr2	62073918	rs58256183	C	T	1271.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr2	62074140	rs113296637	A	AAC	1507.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr2	62074154	rs62149863	G	A	296.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:15,13:0.46:28
chr2	62081012	rs4270331	A	C	25683.77	.	AC=2;AF=1.00;AN=2;DB;DP=991;set=Intersection	GT:AD:AF:DP	1/1:0,977:1.00:977
chr2	62081217	rs1881616	A	G	4169.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr2	62095994	rs4672463	A	G	1596.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr2	62096790	rs149499966	TTCTG	T	5639.73	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:122,144:0.54:266
chr2	62104343	rs7571143	C	T	2208.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr2	62104660	rs36062307	TA	T	73.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.872;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=1.932;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.979;QD=0.52;ReadPosRankSum=0.753;SOR=0.972;set=HC	GT:AD:AF:DP	0/1:112,30:0.21:142
chr2	62107376	rs5831625	T	TC	2953.73	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr2	62107632	rs2272429	G	A	851.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:60,41:0.41:101
chr2	62110551	rs57068738	CA	C	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.582;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.52;ReadPosRankSum=0.004;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:4,7:0.64:11
chr2	62110571	rs12713451	G	T	367.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:3,12:0.80:15
chr2	62112221	rs11429418	G	GA	5824.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:9,263:0.97:272
chr2	62112222	rs67059162	G	A	13146.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=324;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.96;SOR=1.012;set=HC	GT:AD:AF:DP	1/1:0,321:1.00:321
chr2	62112246	rs57035931	C	CT	961.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.939;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.13;ReadPosRankSum=0.177;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:88,69:0.44:157
chr2	62228180	rs55785307	C	G	672.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:27,29:0.52:56
chr2	62729674	rs4672527	T	C	9303.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:0,330:1.00:330
chr2	62729747	rs11443505	G	GA	3674.73	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:1,143:0.99:144
chr2	62733189	rs17854454	C	T	7682.77	.	AC=1;AF=0.500;AN=2;DB;DP=702;set=Intersection	GT:AD:AF:DP	0/1:330,360:0.52:690
chr2	62733253	rs11676567	C	T	4312.77	.	AC=1;AF=0.500;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	0/1:180,193:0.52:373
chr2	62738883	rs6757222	C	T	3911.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr2	62738931	rs6757448	G	C	6235.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr2	62739135	rs4405748	A	C	1195.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr2	63182611	rs148454752	G	GT	600.73	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:73,45:0.38:118
chr2	63380809	rs7595595	G	A	728.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	63486429	rs992214	C	T	2119.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:153,110:0.42:263
chr2	63540523	rs1517402	A	T	1204.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:60,52:0.46:112
chr2	63605772	rs2292794	A	G	402.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:14,15:0.52:29
chr2	63609017	rs2138796	A	T	518.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:30,24:0.44:54
chr2	63720210	rs7563623	A	G	406.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:17,16:0.48:33
chr2	63798333	rs4671068	C	T	793.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.737;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.44;ReadPosRankSum=-0.300;SOR=0.767;set=HC	GT:AD:AF:DP	0/1:35,41:0.54:76
chr2	63816672	rs10469944	C	G	378.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:27,16:0.37:43
chr2	63822785	rs2305157	T	C	879.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:18,33:0.65:51
chr2	63826528	rs7606045	T	G	373.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:15,15:0.50:30
chr2	63849491	rs262496	T	C	4828.77	.	AC=1;AF=0.500;AN=2;DB;DP=462;set=Intersection	GT:AD:AF:DP	0/1:228,226:0.50:454
chr2	63850098	rs12476592	G	C	104.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr2	64069732	rs6546029	G	A	6150.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr2	64082654	.	GTTTTT	G	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.121;ClippingRankSum=0.000;DP=37;ExcessHet=3.0103;FS=9.185;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.72;ReadPosRankSum=0.444;SOR=3.477;set=HC	GT:AD:AF:DP	0/1:16,6:0.27:22
chr2	64085114	rs10183479	G	A	6673.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:2,244:0.99:246
chr2	64118158	rs11433092	T	TA	245.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.123;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=0.000;QD=4.10;ReadPosRankSum=0.040;SOR=1.071;set=HC	GT:AD:AF:DP	0/1:36,24:0.40:60
chr2	64126775	rs78227932	C	A	1553.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:82,74:0.47:156
chr2	64139831	.	TA	T	136.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.296;ClippingRankSum=0.000;DP=141;ExcessHet=3.0103;FS=4.769;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.11;ReadPosRankSum=1.009;SOR=1.304;set=HC	GT:AD:AF:DP	0/1:94,29:0.24:123
chr2	64139901	rs2302809	A	T	521.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:24,21:0.47:45
chr2	64140301	rs10207847	A	T	1065.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:49,50:0.51:99
chr2	64143884	rs13027117	T	C	491.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:28,20:0.42:48
chr2	64174664	rs41291181	G	A	51.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.769;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=5.119;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.98;ReadPosRankSum=-1.003;SOR=0.039;set=HC	GT:AD:AF:DP	0/1:9,4:0.31:13
chr2	64195997	rs200094653	CA	C	142.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.635;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=2.236;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.70;ReadPosRankSum=1.929;SOR=0.382;set=HC	GT:AD:AF:DP	0/1:61,23:0.27:84
chr2	64327544	rs329498	G	T	4430.77	.	AC=1;AF=0.500;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	0/1:232,211:0.48:443
chr2	64327592	rs329497	T	C	5099.77	.	AC=1;AF=0.500;AN=2;DB;DP=524;set=Intersection	GT:AD:AF:DP	0/1:262,256:0.49:518
chr2	64331815	.	CT	C	744.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.598;ClippingRankSum=0.000;DP=176;ExcessHet=3.0103;FS=4.918;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.54;ReadPosRankSum=-0.049;SOR=1.196;set=HC	GT:AD:AF:DP	0/1:75,89:0.54:164
chr2	64794945	rs7598893	G	A	2263.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr2	64796479	rs6546087	C	T	1561.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr2	64796847	rs2287532	A	G	5078.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:2,196:0.99:198
chr2	64796932	rs2287533	G	A	1602.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:1,50:0.98:51
chr2	64799937	rs147232569	TAA	T	1924.73	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:5,71:0.93:76
chr2	65131511	rs13027905	A	G	2784.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:150,130:0.46:280
chr2	65132099	rs4140738	G	A	4669.77	.	AC=1;AF=0.500;AN=2;DB;DP=476;set=Intersection	GT:AD:AF:DP	0/1:252,224:0.47:476
chr2	65200618	rs4671636	C	A	3718.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr2	65230959	rs17624279	G	A	686.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:50,32:0.39:82
chr2	65243867	rs113821977	C	T	834.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:38,33:0.46:71
chr2	65300183	rs114601326	C	T	7253.77	.	AC=1;AF=0.500;AN=2;DB;DP=834;set=Intersection	GT:AD:AF:DP	0/1:465,357:0.43:822
chr2	65315880	rs1420184	G	C	6754.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr2	65315903	rs1420185	G	A	5099.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr2	65325264	.	G	GA	197.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.900;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=1.122;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=2.218;QD=3.09;ReadPosRankSum=0.522;SOR=0.458;set=HC	GT:AD:AF:DP	0/1:45,19:0.30:64
chr2	65481008	rs268871	A	C	2175.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:86,106:0.55:192
chr2	65488538	rs268862	G	A	2156.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:114,107:0.48:221
chr2	65495570	rs55843720	A	C	1779.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.304;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.45;ReadPosRankSum=1.897;SOR=0.774;set=HC	GT:AD:AF:DP	0/1:55,47:0.46:102
chr2	65495570	.	AT	CC	2804	.	AC=1;AF=0.500;AN=2;BRF=0.31;FR=0.5000;HP=3;HapScore=4;MGOF=3;MMLQ=28;MQ=60.08;NF=28;NR=10;PP=2804;QD=20;SC=GGTACCAAATATTACGTTCTA;SbPval=0.48;Source=Platypus;TC=89;TCF=67;TCR=22;TR=38;WE=65495581;WS=65495560;set=Platypus	GT:AD:AF:DP	0/1:51,38:0.43:89
chr2	65495571	rs60931828	T	C	1776.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.473;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.42;ReadPosRankSum=1.854;SOR=0.774;set=HC	GT:AD:AF:DP	0/1:55,47:0.46:102
chr2	65495573	rs72536103	A	AC	1767.73	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:55,47:0.46:102
chr2	65495887	rs268875	G	A	5277.77	.	AC=1;AF=0.500;AN=2;DB;DP=522;set=Intersection	GT:AD:AF:DP	0/1:267,253:0.49:520
chr2	65559027	rs2271198	A	G	3295.77	.	AC=1;AF=0.500;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	0/1:212,172:0.45:384
chr2	65561392	rs4671658	C	T	10063.77	.	AC=1;AF=0.500;AN=2;DB;DP=974;set=Intersection	GT:AD:AF:DP	0/1:485,485:0.50:970
chr2	65604914	rs268120	A	G	3491.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr2	66667848	.	T	G	110.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.025;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.58;ReadPosRankSum=0.342;SOR=0.249;set=HC	GT:AD:AF:DP	0/1:46,24:0.34:70
chr2	66798282	rs2861108	G	T	1343.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr2	67630980	rs3770657	G	A	5972.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr2	67631831	rs61740794	G	A	5049.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr2	67632125	rs3770655	C	T	4522.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr2	67637196	rs1569	G	A	7953.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr2	68272883	rs72821819	G	A	205.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,8:0.67:12
chr2	68352515	rs6742154	A	C	12507.77	.	AC=2;AF=1.00;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	1/1:4,448:0.99:452
chr2	68358341	rs62145930	T	C	5479.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr2	68358653	rs17035004	T	C	1979.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.40;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr2	68385097	rs2044693	A	G	13078.77	.	AC=2;AF=1.00;AN=2;DB;DP=480;set=Intersection	GT:AD:AF:DP	1/1:2,474:1.00:476
chr2	68388823	rs1137930	A	G	12758.77	.	AC=2;AF=1.00;AN=2;DB;DP=492;set=Intersection	GT:AD:AF:DP	1/1:0,486:1.00:486
chr2	68388972	.	T	TA	114.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.327;ClippingRankSum=0.000;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.03;ReadPosRankSum=-0.338;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:87,24:0.22:111
chr2	68389276	rs11402583	G	GA	1259.73	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:5,61:0.92:66
chr2	68389481	rs3217588	CTT	C	5336.73	.	AC=1;AF=0.500;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	0/1:204,146:0.42:350
chr2	68389557	rs141022040	TTA	T	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.464;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=11.304;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.21;ReadPosRankSum=0.388;SOR=2.002;set=HC	GT:AD:AF:DP	0/1:167,17:0.09:184
chr2	68415767	rs687	G	A	9650.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:0,363:1.00:363
chr2	68444171	rs374427852	C	CGCAG,CACGCAG	7813.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=207;set=Intersection	GT:AF:DP	1/2:0.24,0.76:131
chr2	68483396	rs7593613	A	T	710.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr2	68511506	rs5831925	GA	G	911.75	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:10,57:0.85:67
chr2	68511584	rs735815	A	G	2634.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr2	68546588	rs185949133	C	A	213.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:9,11:0.55:20
chr2	68592584	rs880668	T	C	7924.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr2	68592700	rs3770651	A	G	1980.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr2	68607947	rs3816281	G	T	8185.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr2	68615438	rs3217525	A	AG	2118.73	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr2	68620151	rs2289689	C	T	813.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	68620463	rs2289688	G	A	5314.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr2	68622914	rs1063479	G	A	7563.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:1,275:1.00:276
chr2	68881938	.	C	CA	333.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.692;ClippingRankSum=0.000;DP=111;ExcessHet=3.0103;FS=4.215;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=1.383;QD=3.37;ReadPosRankSum=-1.263;SOR=1.446;set=HC	GT:AD:AF:DP	0/1:65,34:0.34:99
chr2	68962259	rs34504087	T	C	1974.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:122,95:0.44:217
chr2	68962570	rs71413157	G	A	1238.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:58,50:0.46:108
chr2	69002760	rs10445945	C	T	2240.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:150,113:0.43:263
chr2	69034249	rs17035954	T	C	1359.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:35,57:0.62:92
chr2	69040500	rs2280310	G	A	2608.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:88,124:0.58:212
chr2	69043264	rs67399232	CT	C	3467.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	0/1:168,229:0.58:397
chr2	69043266	rs78107572	T	A	2557.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	0/1:219,181:0.45:400
chr2	69043539	rs2271832	G	C	855.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.859;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=7.581;MLEAC=1;MLEAF=0.500;MQ=59.83;MQRankSum=0.000;QD=9.51;ReadPosRankSum=-1.520;SOR=0.229;set=HC	GT:AD:AF:DP	0/1:48,42:0.47:90
chr2	69046406	rs17604346	C	T	3812.77	.	AC=1;AF=0.500;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	0/1:225,186:0.45:411
chr2	69049939	rs4241344	G	T	4417.77	.	AC=1;AF=0.500;AN=2;DB;DP=442;set=Intersection	GT:AD:AF:DP	0/1:226,211:0.48:437
chr2	69180161	rs7561266	T	A	2545.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr2	69201894	rs4417751	C	T	1612.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:90,78:0.46:168
chr2	69204671	rs9808077	A	T	1507.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:51,66:0.56:117
chr2	69205023	rs146210841	TAC	T	580.73	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:18,16:0.47:34
chr2	69205942	rs13424275	C	T	3840.77	.	AC=1;AF=0.500;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	0/1:227,179:0.44:406
chr2	69207255	rs62133357	C	T	188.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:21,10:0.32:31
chr2	69208021	rs13431582	C	T	1418.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:63,64:0.50:127
chr2	69240872	rs116312139	G	C	2450.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:110,122:0.53:232
chr2	69272093	rs62135618	G	A	1165.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:42,47:0.53:89
chr2	69297622	rs4591376	C	T	1573.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr2	69298817	rs13030844	T	C	2952.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:183,145:0.44:328
chr2	69317925	rs4854546	G	A	16881.77	.	AC=2;AF=1.00;AN=2;DB;DP=634;set=Intersection	GT:AD:AF:DP	1/1:2,623:1.00:625
chr2	69318129	rs4241348	T	G	2322.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr2	69330284	rs4241349	G	A	644.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	69351621	rs11126217	T	A	1482.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:47,54:0.53:101
chr2	69362161	rs11903639	C	T	1054.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:69,55:0.44:124
chr2	69362262	rs73934746	C	G	822.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:57,41:0.42:98
chr2	69409029	rs6749826	C	A	1472.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:78,73:0.48:151
chr2	69420591	.	T	TCACA	729.73	.	AC=1;AF=0.500;AN=2;DP=166;set=Intersection	GT:AD:AF:DP	0/1:79,31:0.28:110
chr2	69420596	rs7584057	T	C	1968.73	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:65,65:0.50:130
chr2	69553375	rs201330278	GA	G	168.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.194;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.80;ReadPosRankSum=1.266;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:67,27:0.29:94
chr2	69732571	rs144682650	CAT	C	73.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.930;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=1.155;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.49;ReadPosRankSum=-0.431;SOR=0.450;set=HC	GT:AD:AF:DP	0/1:137,15:0.10:152
chr2	69741609	rs2276689	C	T	1352.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:59,66:0.53:125
chr2	69741753	rs3832159	CTGT	C	3796.73	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:106,107:0.50:213
chr2	69741854	rs6715776	T	G	8597.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:0,318:1.00:318
chr2	69747490	rs71397334	C	CT	73.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.941;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.77;MQRankSum=0.657;QD=1.89;ReadPosRankSum=1.405;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:28,11:0.28:39
chr2	69759415	rs2276687	G	A	1990.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:64,81:0.56:145
chr2	69771484	rs3771544	C	T	2429.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:120,109:0.48:229
chr2	69784255	rs3771543	C	T	1224.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:56,53:0.49:109
chr2	69784278	rs3821277	T	C	585.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:42,31:0.42:73
chr2	69870217	.	A	AT	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.046;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.72;ReadPosRankSum=0.726;SOR=0.476;set=HC	GT:AD:AF:DP	0/1:11,8:0.42:19
chr2	70131320	rs72540719	GT	G	44.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.567;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=1.343;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.91;ReadPosRankSum=-0.116;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:37,12:0.24:49
chr2	70164097	rs142032315	A	AG	15854.73	.	AC=2;AF=1.00;AN=2;DB;DP=479;set=Intersection	GT:AD:AF:DP	1/1:0,474:1.00:474
chr2	70187727	rs139486708	A	AC	1043.73	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:55,49:0.47:104
chr2	70188676	rs3796097	T	C	4475.77	.	AC=1;AF=0.500;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	0/1:179,214:0.54:393
chr2	70463334	.	C	CT	114.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.635;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=1.343;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.55;ReadPosRankSum=0.381;SOR=0.422;set=HC	GT:AD:AF:DP	0/1:31,14:0.31:45
chr2	70488470	rs2706762	C	T	551.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:65,31:0.32:96
chr2	70516458	rs75283365	A	C	818.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.092;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=3.520;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.60;ReadPosRankSum=-0.106;SOR=0.520;set=HC	GT:AD:AF:DP	0/1:25,40:0.62:65
chr2	70676639	rs538118	A	G	1142.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:73,60:0.45:133
chr2	70901746	rs13306098	G	T	645.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:45,31:0.41:76
chr2	70901785	rs74768494	A	G	2609.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:86,69:0.45:155
chr2	70901788	rs56014211	GGT	G	2658.73	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:86,71:0.45:157
chr2	70905099	rs2902577	T	G	2330.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr2	70906115	rs2074815	C	A	8464.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:1,314:1.00:315
chr2	70915134	rs2074820	C	G	2124.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:104,94:0.47:198
chr2	70915320	rs7340254	T	A	3236.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.840;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=4.033;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.49;ReadPosRankSum=-1.535;SOR=0.973;set=HC	GT:AD:AF:DP	0/1:118,91:0.44:209
chr2	70915323	rs7340145	C	T	3182.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.404;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=2.533;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.99;ReadPosRankSum=-0.625;SOR=0.910;set=HC	GT:AD:AF:DP	0/1:116,83:0.42:199
chr2	70915347	rs7340146	C	T	799.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:81,43:0.35:124
chr2	70917768	rs12691192	C	T	1032.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:34,43:0.56:77
chr2	70917812	rs10084293	C	T	3667.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.340;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.21;ReadPosRankSum=0.460;SOR=0.418;set=HC	GT:AD:AF:DP	1/1:2,156:0.99:158
chr2	70933636	rs2287096	T	C	1445.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:73,67:0.48:140
chr2	70933659	rs11682965	T	A	1157.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:45,50:0.53:95
chr2	70995129	rs2287097	G	A	2233.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:111,105:0.49:216
chr2	70995217	rs2287098	A	T	547.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:30,23:0.43:53
chr2	71004368	rs4533493	A	G	643.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr2	71004413	rs55926232	C	CA	364.75	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.697;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=1.859;MLEAC=1;MLEAF=0.500;MQ=60.60;MQRankSum=0.864;QD=11.05;ReadPosRankSum=-1.030;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:8,25:0.76:33
chr2	71004492	rs56316086	T	C	1607.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.318;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=-0.851;QD=15.76;ReadPosRankSum=0.294;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:58,44:0.43:102
chr2	71004492	.	TCA	CCT	1286	.	AC=1;AF=0.500;AN=2;BRF=0.4;FR=0.5000;HP=3;HapScore=2;MGOF=14;MMLQ=23;MQ=60.24;NF=17;NR=18;PP=1286;QD=38.2705107103;SC=CTGGGCCTTTTCATTTTTCAT;SbPval=0.46;Source=Platypus;TC=80;TCF=41;TCR=39;TR=35;WE=71004502;WS=71004482;set=Platypus	GT:AD:AF:DP	1/0:45,35:0.44:80
chr2	71004494	rs56135050	A	T	1607.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.027;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=-0.859;QD=15.92;ReadPosRankSum=0.199;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:57,44:0.44:101
chr2	71012604	rs7566541	G	A	4947.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr2	71012734	rs7566476	C	G	4744.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr2	71017516	rs12713717	A	G	3407.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:136,155:0.53:291
chr2	71043461	rs722896	C	T	15223.77	.	AC=2;AF=1.00;AN=2;DB;DP=557;set=Intersection	GT:AD:AF:DP	1/1:0,547:1.00:547
chr2	71044211	rs2075221	C	T	6110.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr2	71058835	rs741326	A	G	8349.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:0,318:1.00:318
chr2	71062648	rs10489990	G	A	5224.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr2	71062833	rs11450450	G	GC	12994.73	.	AC=2;AF=1.00;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	1/1:0,348:1.00:348
chr2	71160421	rs2270262	G	C	8444.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr2	71162996	rs11685700	A	G	5141.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr2	71163173	rs17720303	C	T	13016.77	.	AC=2;AF=1.00;AN=2;DB;DP=498;set=Intersection	GT:AD:AF:DP	1/1:1,495:1.00:496
chr2	71175645	rs11126312	G	A	5969.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.716;ClippingRankSum=0.000;DB;DP=239;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.84;ReadPosRankSum=0.227;SOR=0.999;set=HC	GT:AD:AF:DP	1/1:2,229:0.99:231
chr2	71185391	rs967063	A	C	9893.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:0,372:1.00:372
chr2	71186382	rs17006573	G	A	3564.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr2	71190384	rs2072462	C	T	7642.77	.	AC=1;AF=0.500;AN=2;DB;DP=787;set=Intersection	GT:AD:AF:DP	0/1:401,375:0.48:776
chr2	71190545	rs2072463	G	A	1780.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:89,74:0.45:163
chr2	71191777	rs2270263	C	T	5611.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr2	71205976	rs1115049	A	G	796.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:32,39:0.55:71
chr2	71206058	rs1115050	A	C	311.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:25,16:0.39:41
chr2	71206626	rs3771383	G	T	1120.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:43,46:0.52:89
chr2	71211417	rs72832792	C	G	1855.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:116,91:0.44:207
chr2	71211815	rs3796098	G	A	8921.77	.	AC=1;AF=0.500;AN=2;DB;DP=851;set=Intersection	GT:AD:AF:DP	0/1:421,424:0.50:845
chr2	71211989	rs3796099	A	G	14515.77	.	AC=1;AF=0.500;AN=2;DB;DP=1408;set=Intersection	GT:AD:AF:DP	0/1:697,700:0.50:1397
chr2	71212129	rs3796100	A	T	5147.77	.	AC=1;AF=0.500;AN=2;DB;DP=563;set=Intersection	GT:AD:AF:DP	0/1:307,241:0.44:548
chr2	71212405	rs61732279	T	C	1667.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:111,90:0.45:201
chr2	71216246	rs2286980	A	C	892.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:42,40:0.49:82
chr2	71220793	rs2276684	T	G	1896.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:88,92:0.51:180
chr2	71221822	rs2302561	A	G	7370.77	.	AC=1;AF=0.500;AN=2;DB;DP=859;set=Intersection	GT:AD:AF:DP	0/1:468,383:0.45:851
chr2	71297695	rs2287328	T	C	2424.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:134,118:0.47:252
chr2	71297982	rs2287327	C	T	16125.77	.	AC=2;AF=1.00;AN=2;DB;DP=620;set=Intersection	GT:AD:AF:DP	1/1:3,612:1.00:615
chr2	71300516	rs17616553	T	C	1991.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:97,101:0.51:198
chr2	71305456	rs6713	C	T	16367.77	.	AC=2;AF=1.00;AN=2;DB;DP=599;set=Intersection	GT:AD:AF:DP	1/1:0,597:1.00:597
chr2	71351779	rs58684004	T	C	523.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:32,21:0.40:53
chr2	71357417	rs2012479	C	A	11690.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.883;ClippingRankSum=0.000;DB;DP=503;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.46;ReadPosRankSum=0.433;SOR=0.063;set=HC	GT:AD:AF:DP	1/1:3,475:0.99:478
chr2	71357634	rs1813348	C	T	3492.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr2	71357710	rs981947	G	C	10917.77	.	AC=2;AF=1.00;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	1/1:0,400:1.00:400
chr2	71360144	rs10199088	A	C	13277.77	.	AC=2;AF=1.00;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	1/1:0,478:1.00:478
chr2	71360625	rs1813160	G	T	7225.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr2	71360723	rs1813159	A	G	6328.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr2	71360735	rs138856662	T	TTCC	5811.73	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr2	71361332	rs9941620	T	G	3986.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr2	71365509	rs357757	C	T	367.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	71365676	rs357756	G	A	5063.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr2	71375065	rs357744	A	C	3316.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:1,114:0.99:115
chr2	71376999	rs6574	G	A	3261.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.09;SOR=0.742;set=HC	GT:AD:AF:DP	1/1:0,125:1.00:125
chr2	71405776	rs436793	C	T	1558.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:75,76:0.50:151
chr2	71415479	rs357780	T	C	2388.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr2	71417065	rs357777	G	T	12221.77	.	AC=2;AF=1.00;AN=2;DB;DP=466;set=Intersection	GT:AD:AF:DP	1/1:0,458:1.00:458
chr2	71417134	rs357776	C	T	1935.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:98,85:0.46:183
chr2	71429725	rs56871884	T	C	5511.77	.	AC=1;AF=0.500;AN=2;DB;DP=506;set=Intersection	GT:AD:AF:DP	0/1:229,273:0.54:502
chr2	71429750	rs35398551	A	T	3863.77	.	AC=1;AF=0.500;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	0/1:165,179:0.52:344
chr2	71503978	rs59596777	T	C	1049.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:39,46:0.54:85
chr2	71607539	rs17693408	G	A	260.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:18,12:0.40:30
chr2	71615571	rs2542529	C	T	3319.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr2	71620818	rs6741436	C	T	6285.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr2	71626679	rs34538815	CT	C	3867.73	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:160,169:0.51:329
chr2	71627539	rs3771371	C	T	478.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:26,23:0.47:49
chr2	71632976	rs67651141	AGTGCATATTAAGTGGTCTAATAG	A	466.73	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:14,13:0.48:27
chr2	71633275	rs3732233	T	C	1465.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:82,78:0.49:160
chr2	71633389	rs6714975	C	T	817.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:49,42:0.46:91
chr2	71635931	rs12466025	G	T	3571.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr2	71636036	rs12474072	A	G	236.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:14,12:0.46:26
chr2	71645628	rs72207075	G	GTT	493.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:16,27:0.63:43
chr2	71645828	rs4852783	G	A	1487.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:48,71:0.60:119
chr2	71645854	rs71402979	TGTA	T	553.73	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:49,18:0.27:67
chr2	71645890	rs4852784	G	C	971.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	71645946	rs4438512	G	A	319.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:3,12:0.80:15
chr2	71651939	rs12613800	T	A	1301.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:79,65:0.45:144
chr2	71661855	rs35526551	C	CA	1805.73	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:102,80:0.44:182
chr2	71693943	rs61333801	G	A	989.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:69,46:0.40:115
chr2	71708825	rs71402983	T	TATCC	936.73	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:18,25:0.58:43
chr2	71740897	rs34999029	C	A	2593.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:97,118:0.55:215
chr2	71747235	rs11675897	A	G	3848.77	.	AC=1;AF=0.500;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	0/1:175,195:0.53:370
chr2	71747432	rs11687223	G	T	2022.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:89,94:0.51:183
chr2	71747851	rs12713755	T	C	1341.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:64,61:0.49:125
chr2	71747899	rs12713756	G	A	2963.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:120,139:0.54:259
chr2	71755380	rs4852800	A	G	1887.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:82,88:0.52:170
chr2	71762232	rs4852801	C	T	8287.77	.	AC=1;AF=0.500;AN=2;DB;DP=810;set=Intersection	GT:AD:AF:DP	0/1:417,387:0.48:804
chr2	71762310	rs4852802	A	G	3199.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:160,139:0.46:299
chr2	71766487	rs7609409	G	A	1365.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:66,63:0.49:129
chr2	71776345	rs736096	CA	TG	5677.77	.	AC=1;AF=0.500;AN=2;DB;DP=335;JOINED;set=Intersection	GT:AD:AF:DP	0/1:186,147:0.44:333
chr2	71780215	rs2303596	T	C	6983.77	.	AC=1;AF=0.500;AN=2;DB;DP=734;set=Intersection	GT:AD:AF:DP	0/1:374,354:0.49:728
chr2	71780821	rs2303597	T	C	1978.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr2	71781161	rs5832058	GAC	G	1328.73	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:41,38:0.48:79
chr2	71795003	rs145907318	C	T	1198.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:64,54:0.46:118
chr2	71795152	rs2288355	A	T	7803.77	.	AC=1;AF=0.500;AN=2;DB;DP=742;set=Intersection	GT:AD:AF:DP	0/1:362,368:0.50:730
chr2	71796865	rs10205023	C	G	2089.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr2	71797176	rs10183967	A	C	1371.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:85,56:0.40:141
chr2	71801564	rs75127120	G	A	1692.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:97,80:0.45:177
chr2	71817003	rs1473228	A	G	467.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:24,20:0.45:44
chr2	71825707	rs79899601	C	T	5290.77	.	AC=1;AF=0.500;AN=2;DB;DP=506;set=Intersection	GT:AD:AF:DP	0/1:244,251:0.51:495
chr2	71828423	rs2303604	A	T	1770.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr2	71829821	rs1529408	G	T	5083.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr2	71838597	rs2303606	C	A	10894.77	.	AC=2;AF=1.00;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	1/1:1,403:1.00:404
chr2	71847943	rs12995778	C	A	2034.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr2	71871039	rs84181	A	G	1478.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:58,67:0.54:125
chr2	71871236	rs84182	A	G	704.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:33,30:0.48:63
chr2	71887586	rs114239741	C	T	720.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:21,30:0.59:51
chr2	71891361	rs2303599	C	T	1468.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:76,68:0.47:144
chr2	71901286	rs2559081	C	T	364.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:40,18:0.31:58
chr2	71906171	rs1863812	T	C	1662.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:113,81:0.42:194
chr2	71907930	rs7558412	G	T	153.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.953;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.61;ReadPosRankSum=-1.754;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:9,7:0.44:16
chr2	72359312	rs2241059	A	G	669.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:27,34:0.56:61
chr2	72361865	rs2241058	C	A	2027.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:140,96:0.41:236
chr2	72361960	rs2241057	A	G	4838.77	.	AC=1;AF=0.500;AN=2;DB;DP=533;set=Intersection	GT:AD:AF:DP	0/1:284,247:0.47:531
chr2	72692272	rs5832083	A	AAG	8404.73	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:3,289:0.99:292
chr2	72741728	rs367736783	TAA	T	250.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.489;ClippingRankSum=-0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=22.80;ReadPosRankSum=1.534;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:4,7:0.64:11
chr2	72741734	rs71337705	A	T	396.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.534;ClippingRankSum=-0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=24.80;ReadPosRankSum=-0.000;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:4,12:0.75:16
chr2	72742083	.	GACAC	G,GAC	4583.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.268;ClippingRankSum=0.000;DP=177;ExcessHet=3.0103;FS=2.575;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=29.01;ReadPosRankSum=0.602;SOR=0.174;set=HC	GT:AD:AF:DP	1/2:3,32,123:0.20,0.78:158
chr2	72786528	rs7559956	A	C	1932.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:68,90:0.57:158
chr2	73151231	rs1561247	C	T	3929.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr2	73195837	rs10565763	TTTCC	T	1878.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr2	73226206	rs192971712	T	A	2288.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:103,108:0.51:211
chr2	73339430	rs4143146	T	G	12838.77	.	AC=2;AF=1.00;AN=2;DB;DP=505;set=Intersection	GT:AD:AF:DP	1/1:0,493:1.00:493
chr2	73339708	rs1864488	G	A	30443.77	.	AC=2;AF=1.00;AN=2;DB;DP=1130;set=Intersection	GT:AD:AF:DP	1/1:1,1121:1.00:1122
chr2	73430234	rs13432787	T	C	543.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:36,24:0.40:60
chr2	73435786	rs57038990	C	A	633.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:32,26:0.45:58
chr2	73447986	rs145758484	G	A	356.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:23,18:0.44:41
chr2	73449981	rs74807151	G	A	3050.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:154,142:0.48:296
chr2	73457424	rs12471835	G	A	1048.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:52,51:0.50:103
chr2	73460293	rs70965722	AGGGCC	A	3752.73	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:72,101:0.58:173
chr2	73461553	rs41285977	C	T	1711.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:79,83:0.51:162
chr2	73462880	rs6714734	A	G	2147.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:118,105:0.47:223
chr2	73476857	rs2231433	T	C	1442.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:94,68:0.42:162
chr2	73477527	rs2231437	C	T	1663.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:39,77:0.66:116
chr2	73490412	rs34363861	A	G	2021.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:116,101:0.47:217
chr2	73492614	rs526106	A	T	4428.77	.	AC=1;AF=0.500;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	0/1:198,205:0.51:403
chr2	73613031	rs61156725	TGGAGGA	T	2213.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.39;QD=44.27;SOR=2.494;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr2	73613341	rs11126399	G	A	3691.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr2	73649928	rs1881245	G	A	6742.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr2	73651967	rs3813227	C	T	4315.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr2	73674966	rs12104768	T	C	424.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:13,18:0.58:31
chr2	73675669	rs2037814	T	G	8969.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:1,298:1.00:299
chr2	73677548	rs112034360	A	G	10024.77	.	AC=1;AF=0.500;AN=2;DB;DP=959;set=Intersection	GT:AD:AF:DP	0/1:497,458:0.48:955
chr2	73677833	rs6546836	A	G	21774.77	.	AC=2;AF=1.00;AN=2;DB;DP=777;set=Intersection	GT:AD:AF:DP	1/1:2,769:1.00:771
chr2	73677898	rs6546837	G	C	22961.77	.	AC=2;AF=1.00;AN=2;DB;DP=803;set=Intersection	GT:AD:AF:DP	1/1:1,798:1.00:799
chr2	73679280	rs6546838	A	G	10400.77	.	AC=2;AF=1.00;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	1/1:3,367:0.99:370
chr2	73679866	rs10496192	T	C	5592.77	.	AC=1;AF=0.500;AN=2;DB;DP=503;set=Intersection	GT:AD:AF:DP	0/1:249,247:0.50:496
chr2	73679990	rs6724782	T	A	12801.77	.	AC=2;AF=1.00;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	1/1:1,457:1.00:458
chr2	73680508	rs6546839	G	C	17852.77	.	AC=2;AF=1.00;AN=2;DB;DP=653;set=Intersection	GT:AD:AF:DP	1/1:3,642:1.00:645
chr2	73717567	rs2056486	G	T	11878.77	.	AC=2;AF=1.00;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	1/1:1,432:1.00:433
chr2	73717656	rs10193972	A	G	18518.77	.	AC=2;AF=1.00;AN=2;DB;DP=668;set=Intersection	GT:AD:AF:DP	1/1:1,656:1.00:657
chr2	73746923	rs11884776	C	T	4312.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:1,141:0.99:142
chr2	73761881	rs3738848	G	A	2708.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr2	73762236	rs10178678	A	G	1594.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr2	73829372	rs1052162	C	T	6154.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:2,236:0.99:238
chr2	73830581	rs113408397	G	GA	682.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.332;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=1.567;MLEAC=1;MLEAF=0.500;MQ=60.42;MQRankSum=0.994;QD=11.57;ReadPosRankSum=-1.105;SOR=1.162;set=HC	GT:AD:AF:DP	0/1:17,42:0.71:59
chr2	73868328	rs13538	A	G	26111.77	.	AC=2;AF=1.00;AN=2;DB;DP=955;set=Intersection	GT:AD:AF:DP	1/1:0,935:1.00:935
chr2	73899613	rs2421585	T	G	2613.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr2	73899955	rs6725284	G	T	13633.77	.	AC=2;AF=1.00;AN=2;DB;DP=511;set=Intersection	GT:AD:AF:DP	1/1:0,497:1.00:497
chr2	73900210	rs4637150	A	G	3613.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr2	73900900	rs10206899	T	C	1088.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	73912256	rs368610477	G	A	77.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.471;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=10.178;MLEAC=1;MLEAF=0.500;MQ=52.78;MQRankSum=-4.987;QD=0.80;ReadPosRankSum=0.330;SOR=2.488;set=HC	GT:AD:AF:DP	0/1:85,12:0.12:97
chr2	73927931	rs4852974	A	G	5348.77	.	AC=1;AF=0.500;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	0/1:185,218:0.54:403
chr2	73928098	rs2001490	C	G	11795.77	.	AC=1;AF=0.500;AN=2;DB;DP=1205;set=Intersection	GT:AD:AF:DP	0/1:634,547:0.46:1181
chr2	73928366	rs2012574	G	C	5750.77	.	AC=1;AF=0.500;AN=2;DB;DP=656;set=Intersection	GT:AD:AF:DP	0/1:357,294:0.45:651
chr2	73956940	rs67805162	CT	C	130.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.319;ClippingRankSum=-0.000;DB;DP=23;ExcessHet=3.0103;FS=2.817;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.26;ReadPosRankSum=-0.571;SOR=1.255;set=HC	GT:AD:AF:DP	0/1:9,9:0.50:18
chr2	73957124	rs7210	A	G	1005.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:89,56:0.39:145
chr2	73957227	rs13003035	T	A	438.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:21,21:0.50:42
chr2	73994074	rs2567599	G	A	7498.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr2	74000701	rs2116367	C	T	506.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:14,19:0.58:33
chr2	74007136	rs2272051	T	C	7503.77	.	AC=1;AF=0.500;AN=2;DB;DP=687;set=Intersection	GT:AD:AF:DP	0/1:323,350:0.52:673
chr2	74007345	rs3813228	A	G	1178.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:87,57:0.40:144
chr2	74087290	rs1025424	T	C	4917.77	.	AC=1;AF=0.500;AN=2;DB;DP=500;set=Intersection	GT:AD:AF:DP	0/1:250,249:0.50:499
chr2	74089266	.	G	GA	259.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.911;ClippingRankSum=0.000;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=2.422;QD=1.64;ReadPosRankSum=-0.542;SOR=0.759;set=HC	GT:AD:AF:DP	0/1:120,38:0.24:158
chr2	74128361	rs1653258	T	G	7318.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.220;ClippingRankSum=0.000;DB;DP=433;ExcessHet=3.0103;FS=1.777;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.90;ReadPosRankSum=-0.776;SOR=0.580;set=HC	GT:AD:AF:DP	0/1:241,192:0.44:433
chr2	74128369	rs1632564	G	A	7562.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.463;ClippingRankSum=0.000;DB;DP=470;ExcessHet=3.0103;FS=3.323;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.09;ReadPosRankSum=-0.414;SOR=0.484;set=HC	GT:AD:AF:DP	0/1:263,207:0.44:470
chr2	74128391	rs1721241	G	C	5563.77	.	AC=1;AF=0.500;AN=2;DB;DP=618;set=Intersection	GT:AD:AF:DP	0/1:345,273:0.44:618
chr2	74128433	rs1050146	C	T	7326.77	.	AC=1;AF=0.500;AN=2;DB;DP=775;set=Intersection	GT:AD:AF:DP	0/1:412,362:0.47:774
chr2	74128666	.	TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTGC	T	2997	.	AC=1;AF=0.500;AN=2;BRF=0.38;FR=0.5000;HP=2;HapScore=3;MGOF=6;MMLQ=22;MQ=58.58;NF=0;NR=15;PP=2997;QD=20;SC=GAAATGTGTGTGTGTGTGTGT;SbPval=1.0;Source=Platypus;TC=43;TCF=0;TCR=43;TR=15;WE=74128721;WS=74128649;set=Platypus	GT:AD:AF:DP	1/0:28,15:0.35:43
chr2	74129664	rs1653256	A	G	9888.77	.	AC=1;AF=0.500;AN=2;DB;DP=980;set=Intersection	GT:AD:AF:DP	0/1:484,490:0.50:974
chr2	74129712	rs1721243	C	G	10869.77	.	AC=1;AF=0.500;AN=2;DB;DP=1001;set=Intersection	GT:AD:AF:DP	0/1:479,507:0.51:986
chr2	74129895	rs1721244	G	A	3905.77	.	AC=1;AF=0.500;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	0/1:164,179:0.52:343
chr2	74135380	rs756127	G	A	1091.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:64,55:0.46:119
chr2	74135797	rs702461	T	C	907.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:39,40:0.51:79
chr2	74135898	rs756128	A	G	2799.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:148,135:0.48:283
chr2	74140581	rs891699	A	T	2436.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:111,108:0.49:219
chr2	74140789	rs891698	T	C	5403.77	.	AC=1;AF=0.500;AN=2;DB;DP=465;set=Intersection	GT:AD:AF:DP	0/1:219,239:0.52:458
chr2	74140888	rs891697	A	C	1377.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:34,51:0.60:85
chr2	74142164	rs35892339	GA	G	266.73	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:10,14:0.58:24
chr2	74146869	rs1721238	G	A	852.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	74153905	rs831526	C	T	2597.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr2	74185876	rs4777	A	T	6669.77	.	AC=1;AF=0.500;AN=2;DB;DP=580;set=Intersection	GT:AD:AF:DP	0/1:263,314:0.54:577
chr2	74273383	rs11426743	T	TC	2904.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.105;ClippingRankSum=0.000;DB;DP=237;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.74;ReadPosRankSum=1.373;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:110,118:0.52:228
chr2	74300717	rs7560668	T	C	2066.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:144,105:0.42:249
chr2	74320262	rs12713810	C	G	1260.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:60,58:0.49:118
chr2	74327453	rs6738709	C	T	1027.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:36,45:0.56:81
chr2	74362090	rs828879	A	G	1556.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr2	74374884	rs1667605	G	A	1303.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:49,61:0.55:110
chr2	74383911	rs828852	G	A	700.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:17,28:0.62:45
chr2	74400503	rs10631708	G	GTT	38.87	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150;ClippingRankSum=-0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.72;ReadPosRankSum=-0.674;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr2	74425947	rs13001449	G	T	3999.77	.	AC=1;AF=0.500;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	0/1:164,186:0.53:350
chr2	74448655	rs7587117	T	C	2216.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:108,114:0.51:222
chr2	74466594	rs4853018	G	A	5845.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr2	74489490	.	CT	C	53.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.353;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=1.810;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.85;ReadPosRankSum=0.695;SOR=1.375;set=HC	GT:AD:AF:DP	0/1:16,13:0.45:29
chr2	74590116	rs72466494	C	T	2256.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:95,103:0.52:198
chr2	74595014	rs909177	G	A	3517.77	.	AC=1;AF=0.500;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	0/1:238,177:0.43:415
chr2	74596168	rs3216580	G	GA	825.73	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:39,29:0.43:68
chr2	74597527	rs740277	G	A	3759.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:151,168:0.53:319
chr2	74598999	rs146355915	AAAG	A	374.73	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:26,12:0.32:38
chr2	74604673	rs3213672	C	T	3055.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:145,136:0.48:281
chr2	74604895	rs3815241	T	C	1713.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:106,83:0.44:189
chr2	74641624	rs2240444	G	C	5851.77	.	AC=1;AF=0.500;AN=2;DB;DP=635;set=Intersection	GT:AD:AF:DP	0/1:337,295:0.47:632
chr2	74649920	rs201792044	C	CA	237.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.205;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=0.846;QD=4.10;ReadPosRankSum=-0.859;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:35,23:0.40:58
chr2	74649921	rs11685929	C	A	1009.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.795;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=1.214;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-0.475;QD=16.29;ReadPosRankSum=-0.536;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:13,49:0.79:62
chr2	74682512	rs2268417	C	T	3653.77	.	AC=1;AF=0.500;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	0/1:212,172:0.45:384
chr2	74687258	rs113321228	A	ACACATTT	12850.73	.	AC=1;AF=0.500;AN=2;DB;DP=1457;set=Intersection	GT:AD:AF:DP	0/1:648,600:0.48:1248
chr2	74687550	rs8469	T	C	1346.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:83,62:0.43:145
chr2	74690039	rs2268416	G	A	4967.77	.	AC=1;AF=0.500;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	0/1:228,226:0.50:454
chr2	74690378	rs1063588	C	T	1585.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:92,77:0.46:169
chr2	74699778	rs1047911	C	A	7653.77	.	AC=1;AF=0.500;AN=2;DB;DP=642;set=Intersection	GT:AD:AF:DP	0/1:291,344:0.54:635
chr2	74710491	rs6707475	C	T	4077.77	.	AC=1;AF=0.500;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	0/1:219,195:0.47:414
chr2	74719910	rs17009980	G	T	1533.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:66,70:0.51:136
chr2	74720002	rs4853026	C	G	2646.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr2	74725144	rs6546908	T	C	9893.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	1/1:0,355:1.00:355
chr2	74725178	rs17009998	G	A	4356.77	.	AC=1;AF=0.500;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	0/1:242,208:0.46:450
chr2	74732415	rs2240443	T	G	1074.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:57,45:0.44:102
chr2	74734983	.	TG	T	109.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.959;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.89;ReadPosRankSum=0.476;SOR=0.430;set=HC	GT:AD:AF:DP	0/1:46,12:0.21:58
chr2	74746080	rs6709863	C	T	255.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:11,10:0.48:21
chr2	74746322	rs6546909	A	T	956.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:49,47:0.49:96
chr2	74751022	rs143229792	G	GT	3215.73	.	AC=1;AF=0.500;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	0/1:208,189:0.48:397
chr2	74754818	.	G	GA	352.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.282;ClippingRankSum=0.000;DP=251;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=2.884;QD=1.46;ReadPosRankSum=0.377;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:189,52:0.22:241
chr2	74755778	rs10779958	A	C	692.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:32,29:0.48:61
chr2	74756111	rs3835033	G	GA	2521.73	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:131,160:0.55:291
chr2	74756176	rs2231250	G	C	3958.77	.	AC=1;AF=0.500;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	0/1:213,186:0.47:399
chr2	74758934	rs2241028	G	A	729.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.935;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=3.145;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.86;ReadPosRankSum=1.087;SOR=1.115;set=HC	GT:AD:AF:DP	0/1:41,33:0.45:74
chr2	74761422	rs6707302	T	C	6595.77	.	AC=1;AF=0.500;AN=2;DB;DP=653;set=Intersection	GT:AD:AF:DP	0/1:348,296:0.46:644
chr2	74763805	rs139301764	T	C	3652.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:153,166:0.52:319
chr2	74779683	rs146972503	G	C	4893.77	.	AC=1;AF=0.500;AN=2;DB;DP=469;set=Intersection	GT:AD:AF:DP	0/1:232,223:0.49:455
chr2	74789700	rs11126435	A	T	395.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:11,15:0.58:26
chr2	74900588	rs34617503	G	T	1104.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:65,53:0.45:118
chr2	74901602	rs363608	C	T	856.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:34,39:0.53:73
chr2	74902872	rs363609	A	G	4004.77	.	AC=1;AF=0.500;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	0/1:173,184:0.52:357
chr2	75061873	rs663504	C	G	3659.77	.	AC=1;AF=0.500;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	0/1:168,174:0.51:342
chr2	75105798	rs604112	A	G	17470.77	.	AC=2;AF=1.00;AN=2;DB;DP=643;set=Intersection	GT:AD:AF:DP	1/1:0,641:1.00:641
chr2	75113572	rs2306806	G	A	2955.77	.	AC=1;AF=0.500;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	0/1:191,148:0.44:339
chr2	75113657	rs2229626	C	T	2374.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:108,107:0.50:215
chr2	75113789	rs2229627	C	G	5331.77	.	AC=1;AF=0.500;AN=2;DB;DP=575;set=Intersection	GT:AD:AF:DP	0/1:301,273:0.48:574
chr2	75115108	rs10194657	A	G	3922.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr2	75116627	rs4853069	C	T	2320.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:163,115:0.41:278
chr2	75185856	rs12366	G	T	3215.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:124,146:0.54:270
chr2	75187573	rs3771799	G	A	1865.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:72,90:0.56:162
chr2	75187793	rs3821312	A	T	381.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:22,18:0.45:40
chr2	75187869	rs3771800	T	C	74.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.067;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=3.424;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.80;ReadPosRankSum=1.541;SOR=0.120;set=HC	GT:AD:AF:DP	0/1:6,5:0.45:11
chr2	75425623	rs2024512	G	A	242.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:15,12:0.44:27
chr2	75425728	rs6715729	A	G	1056.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:70,51:0.42:121
chr2	75720372	rs11126472	C	T	1379.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:78,67:0.46:145
chr2	75720568	rs148155576	CGCTGTCGCT	C	6335.73	.	AC=1;AF=0.500;AN=2;DB;DP=418;MQ=60.03;set=Intersection	GT:AD:AF:DP	0/1:214,168:0.44:382
chr2	75720664	rs6741778	G	A	4511.77	.	AC=1;AF=0.500;AN=2;DB;DP=474;MQ=60.02;set=Intersection	GT:AD:AF:DP	0/1:253,215:0.46:468
chr2	75744918	rs2286995	T	C	4169.77	.	AC=1;AF=0.500;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	0/1:196,197:0.50:393
chr2	75919272	.	A	AAT	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.974;ClippingRankSum=0.000;DP=64;ExcessHet=3.0103;FS=1.913;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.85;ReadPosRankSum=-1.386;SOR=0.303;set=HC	GT:AD:AF:DP	0/1:36,6:0.14:42
chr2	77748604	rs113233659	TA	T	1110.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.368;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=6.744;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.10;ReadPosRankSum=0.900;SOR=1.262;set=HC	GT:AD:AF:DP	0/1:102,80:0.44:182
chr2	79253029	rs385742	T	G	776.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:36,32:0.47:68
chr2	79253150	rs369967	A	G	3806.77	.	AC=1;AF=0.500;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	0/1:182,176:0.49:358
chr2	79253375	rs425846	C	T	2367.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:93,107:0.54:200
chr2	79253818	rs412912	C	G	916.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:23,40:0.63:63
chr2	79253987	.	ATAGGGGAAAGT	A	648.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.481;ClippingRankSum=0.000;DP=231;ExcessHet=3.0103;FS=10.146;MLEAC=1;MLEAF=0.500;MQ=58.76;MQRankSum=-10.755;QD=2.88;ReadPosRankSum=-4.745;SOR=0.231;set=HC	GT:AD:AF:DP	0/1:196,29:0.13:225
chr2	79254000	.	CATGCA	C	608.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.321;ClippingRankSum=0.000;DP=245;ExcessHet=3.0103;FS=3.781;MLEAC=1;MLEAF=0.500;MQ=58.69;MQRankSum=-11.860;QD=2.49;ReadPosRankSum=-5.398;SOR=0.383;set=HC	GT:AD:AF:DP	0/1:213,31:0.13:244
chr2	79254029	rs34088535	C	CA	1754.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.107;ClippingRankSum=0.000;DB;DP=313;ExcessHet=3.0103;FS=17.812;MLEAC=1;MLEAF=0.500;MQ=58.39;MQRankSum=-11.314;QD=5.62;ReadPosRankSum=-6.760;SOR=1.706;set=HC	GT:AD:AF:DP	0/1:243,69:0.22:312
chr2	79254065	rs431912	C	T	5261.77	.	AC=1;AF=0.500;AN=2;DB;DP=610;set=Intersection	GT:AD:AF:DP	0/1:363,246:0.40:609
chr2	79254101	rs396461	T	G	10779.77	.	AC=1;AF=0.500;AN=2;DB;DP=1093;set=Intersection	GT:AD:AF:DP	0/1:586,502:0.46:1088
chr2	79254261	rs452267	T	C	7737.77	.	AC=1;AF=0.500;AN=2;DB;DP=712;set=Intersection	GT:AD:AF:DP	0/1:364,340:0.48:704
chr2	79255426	rs383969	G	C	1675.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:70,75:0.52:145
chr2	79312414	rs3739144	G	A	7544.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:2,274:0.99:276
chr2	79313815	rs2073445	G	T	2424.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr2	79314081	rs6738657	T	C	1202.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:95,51:0.35:146
chr2	79314094	rs6723688	G	T	4067.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr2	79348129	rs11339710	GA	G	2464.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.065;ClippingRankSum=0.000;DB;DP=266;ExcessHet=3.0103;FS=3.792;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=1.143;QD=11.52;ReadPosRankSum=0.932;SOR=1.122;set=HC	GT:AD:AF:DP	0/1:34,180:0.84:214
chr2	79349003	.	T	C	4733.77	.	AC=1;AF=0.500;AN=2;DP=493;MQ=59.98;set=Intersection	GT:AD:AF:DP	0/1:257,226:0.47:483
chr2	79349372	rs283891	C	G	508.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:18,22:0.55:40
chr2	79350186	rs3739142	G	A	2446.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:80,101:0.56:181
chr2	79350347	rs12228	A	G	17399.77	.	AC=2;AF=1.00;AN=2;DB;DP=632;set=Intersection	GT:AD:AF:DP	1/1:0,623:1.00:623
chr2	79350505	rs12072	C	T	2940.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:140,132:0.49:272
chr2	79385758	rs80188986	A	C	1931.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.234;ClippingRankSum=0.000;DB;DP=300;ExcessHet=3.0103;FS=5.614;MLEAC=1;MLEAF=0.500;MQ=58.53;MQRankSum=-9.810;QD=6.48;ReadPosRankSum=1.249;SOR=1.034;set=HC	GT:AD:AF:DP	0/1:202,96:0.32:298
chr2	79385786	rs76653007	TG	CA	2048.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.343;ClippingRankSum=0.000;DB;DP=239;ExcessHet=3.0103;FS=16.889;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.65;MQRankSum=-9.637;QD=8.57;ReadPosRankSum=-0.701;SOR=1.705;set=HC	GT:AD:AF:DP	0/1:175,64:0.27:239
chr2	79385823	rs201139260	T	G	209.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.991;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=10.543;MLEAC=1;MLEAF=0.500;MQ=59.12;MQRankSum=-7.664;QD=1.23;ReadPosRankSum=-2.155;SOR=1.683;set=HC	GT:AD:AF:DP	0/1:145,26:0.15:171
chr2	79422965	rs1434199	C	G	1558.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:88,77:0.47:165
chr2	79914539	rs17017573	G	A	1251.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr2	79914570	rs35164413	C	CT	804.19	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.267;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=4.347;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.65;ReadPosRankSum=1.962;SOR=0.297;set=HC	GT:AD:AF:DP	0/1:15,54:0.78:69
chr2	80101515	rs56849709	CA	C	127.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.931;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=1.869;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.24;ReadPosRankSum=-0.561;SOR=1.310;set=HC	GT:AD:AF:DP	0/1:40,17:0.30:57
chr2	80529706	rs35054232	A	G	3706.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:154,165:0.52:319
chr2	80529956	rs6733871	T	C	4536.77	.	AC=1;AF=0.500;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	0/1:207,208:0.50:415
chr2	80540530	rs56757449	G	C	391.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:20,17:0.46:37
chr2	80801524	rs2276661	T	C	285.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:13,16:0.55:29
chr2	80809027	rs17019401	C	G	523.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:18,19:0.51:37
chr2	80831481	rs2302875	G	A	597.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:18,24:0.57:42
chr2	80846147	rs56987036	C	CT	690.75	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.079;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=3.311;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=0.588;QD=12.79;ReadPosRankSum=-0.505;SOR=1.483;set=HC	GT:AD:AF:DP	1/1:10,44:0.81:54
chr2	84518438	rs1968722	T	C	3101.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr2	84650707	rs2832	A	G	1754.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr2	84660654	.	T	A	1188.77	.	AC=1;AF=0.500;AN=2;DP=100;set=Intersection	GT:AD:AF:DP	0/1:50,49:0.49:99
chr2	84676163	rs10202632	C	A	1881.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr2	84676886	.	TAAAA	T	1393.73	.	AC=1;AF=0.500;AN=2;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=26.80;SOR=1.781;set=HC	GT:AD:AF:DP	0/1:12,40:0.77:52
chr2	84755996	rs35980296	A	ATT	3870.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.665;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=1.763;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.000;QD=26.33;ReadPosRankSum=1.459;SOR=0.430;set=HC	GT:AD:AF:DP	1/1:6,141:0.96:147
chr2	84756049	rs4832089	G	A	10064.77	.	AC=2;AF=1.00;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	1/1:1,371:1.00:372
chr2	84756341	rs4832090	T	G	828.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	84771480	rs1037863	G	A	5549.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr2	84771567	rs1542477	C	T	4261.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr2	84784780	rs10660724	C	CAAAAAA	52.70	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.57;QD=52.70;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,1:1.00:1
chr2	84800605	rs11891970	C	A	5062.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr2	84806553	rs6547569	G	A	772.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	84822715	rs6761632	C	T	3758.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr2	84834063	rs4276039	T	C	11458.77	.	AC=2;AF=1.00;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	1/1:0,429:1.00:429
chr2	84834237	rs4441485	T	C	8135.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr2	84880445	rs28375417	G	C	948.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:53,44:0.45:97
chr2	84897361	rs12470102	T	A	250.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	84897517	rs1881095	A	G	3508.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr2	84899360	rs4832106	G	A	2090.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr2	84899498	rs147786546	A	T	5127.77	.	AC=1;AF=0.500;AN=2;DB;DP=525;set=Intersection	GT:AD:AF:DP	0/1:267,256:0.49:523
chr2	84915469	rs41490447	A	T	477.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:14,18:0.56:32
chr2	84924823	rs78190897	T	C	6434.77	.	AC=1;AF=0.500;AN=2;DB;DP=573;set=Intersection	GT:AD:AF:DP	0/1:268,303:0.53:571
chr2	84930815	rs11424668	G	GT	211.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.414;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.82;ReadPosRankSum=2.971;SOR=1.519;set=HC	GT:AD:AF:DP	0/1:8,16:0.67:24
chr2	84940477	rs4832108	T	C	1517.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:83,73:0.47:156
chr2	84950006	rs1192336	T	C	593.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:17,24:0.59:41
chr2	84955129	rs75124059	T	G	553.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:23,23:0.50:46
chr2	85023554	rs754273	A	G	3684.77	.	AC=1;AF=0.500;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	0/1:178,170:0.49:348
chr2	85023653	rs754274	G	C	2956.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:156,143:0.48:299
chr2	85024731	rs1192395	C	T	6061.77	.	AC=1;AF=0.500;AN=2;DB;DP=566;set=Intersection	GT:AD:AF:DP	0/1:269,289:0.52:558
chr2	85040393	rs1192362	G	C	549.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.597;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=1.278;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.00;ReadPosRankSum=-0.424;SOR=0.922;set=HC	GT:AD:AF:DP	0/1:32,23:0.42:55
chr2	85040405	rs2276609	A	G	388.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.358;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=1.955;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.72;ReadPosRankSum=-0.265;SOR=1.136;set=HC	GT:AD:AF:DP	0/1:24,16:0.40:40
chr2	85040418	rs1192361	A	G	306.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.799;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=2.945;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.30;ReadPosRankSum=0.882;SOR=1.773;set=HC	GT:AD:AF:DP	0/1:20,13:0.39:33
chr2	85041295	rs1192360	T	C	694.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:27,28:0.51:55
chr2	85041316	rs1192359	T	C	389.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:18,17:0.49:35
chr2	85051122	rs1649292	G	A	2156.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:105,99:0.49:204
chr2	85066245	rs736711	G	A	981.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:38,47:0.55:85
chr2	85108252	rs34667238	G	GC	2445.73	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.47;QD=36.50;SOR=1.946;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr2	85254962	rs145605455	C	T	375.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:15,15:0.50:30
chr2	85360828	.	GGGC	G	1158.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.746;ClippingRankSum=0.000;DP=63;ExcessHet=3.0103;FS=1.103;MLEAC=1;MLEAF=0.500;MQ=60.34;MQRankSum=1.381;QD=19.00;ReadPosRankSum=1.759;SOR=1.011;set=HC	GT:AD:AF:DP	0/1:29,32:0.52:61
chr2	85510777	rs7574856	A	G	1035.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:51,43:0.46:94
chr2	85532205	rs6741339	C	G	1807.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr2	85534574	rs59653199	T	C	219.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.465;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=31.40;ReadPosRankSum=-0.000;SOR=2.584;set=HC	GT:AD:AF:DP	0/1:1,6:0.86:7
chr2	85536415	rs11547160	G	A	8436.77	.	AC=1;AF=0.500;AN=2;DB;DP=883;set=Intersection	GT:AD:AF:DP	0/1:449,416:0.48:865
chr2	85549868	rs4240199	A	G	18348.77	.	AC=2;AF=1.00;AN=2;DB;DP=536;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.82;SOR=0.801;set=HC	GT:AD:AF:DP	1/1:0,527:1.00:527
chr2	85549868	.	AGGGGAA	GGGGGAA,GGGGGAG	2962	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.44;FR=0.5000,0.5000;HP=4;HapScore=2;MGOF=3;MMLQ=22;MQ=60.0;NF=175,73;NR=200,87;PP=2962,2601;QD=20;SC=GTTAGGACTTAGGGGAAAAAA;SbPval=0.55;Source=Platypus;TC=376;TCF=175;TCR=201;TR=375,160;WE=85549882;WS=85549858;set=Platypus	GT:AF:DP	0/1:1.00:376
chr2	85549874	rs3637	A	G	5176.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.283;ClippingRankSum=0.000;DB;DP=517;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.19;ReadPosRankSum=-0.151;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:266,242:0.48:508
chr2	85552186	rs7572750	C	A	1680.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:70,79:0.53:149
chr2	85552211	rs150997633	AT	A	1394.73	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:57,51:0.47:108
chr2	85553784	rs1044973	C	T	4857.77	.	AC=1;AF=0.500;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	0/1:193,215:0.53:408
chr2	85554080	rs4247303	G	A	11265.77	.	AC=1;AF=0.500;AN=2;DB;DP=1118;set=Intersection	GT:AD:AF:DP	0/1:580,520:0.47:1100
chr2	85570186	rs4832001	G	A	283.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:31,14:0.31:45
chr2	85570942	rs9309620	G	C	2442.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr2	85571710	rs4832171	A	G	4741.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:1,173:0.99:174
chr2	85573033	rs908302	G	A	11091.77	.	AC=2;AF=1.00;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	1/1:2,410:1.00:412
chr2	85573049	rs908304	G	A	4447.77	.	AC=1;AF=0.500;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	0/1:181,203:0.53:384
chr2	85617058	rs56231819	C	T	5204.77	.	AC=1;AF=0.500;AN=2;DB;DP=554;set=Intersection	GT:AD:AF:DP	0/1:293,250:0.46:543
chr2	85617327	rs17850708	C	T	6921.77	.	AC=1;AF=0.500;AN=2;DB;DP=721;set=Intersection	GT:AD:AF:DP	0/1:380,336:0.47:716
chr2	85617579	rs17851663	C	T	6666.77	.	AC=1;AF=0.500;AN=2;DB;DP=618;set=Intersection	GT:AD:AF:DP	0/1:299,313:0.51:612
chr2	85617913	rs17850709	G	T	925.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:71,42:0.37:113
chr2	85618138	rs138054626	TCAGTGGAGC	T	3786.73	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:121,102:0.46:223
chr2	85618171	rs11678506	G	A	1774.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:74,84:0.53:158
chr2	85622059	rs6886	T	C	2685.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:118,134:0.53:252
chr2	85625222	rs6885	T	G	1425.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:92,68:0.42:160
chr2	85626454	rs35776280	C	A	6806.77	.	AC=1;AF=0.500;AN=2;DB;DP=606;set=Intersection	GT:AD:AF:DP	0/1:278,320:0.54:598
chr2	85626479	rs34063934	G	C	5156.77	.	AC=1;AF=0.500;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	0/1:178,229:0.56:407
chr2	85626524	rs35666320	C	T	2767.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:82,112:0.58:194
chr2	85628556	rs2002444	A	G	2478.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:103,101:0.50:204
chr2	85628745	rs2229669	C	T	5248.77	.	AC=1;AF=0.500;AN=2;DB;DP=501;set=Intersection	GT:AD:AF:DP	0/1:247,246:0.50:493
chr2	85628983	rs2229668	C	T	7747.77	.	AC=1;AF=0.500;AN=2;DB;DP=826;set=Intersection	GT:AD:AF:DP	0/1:434,383:0.47:817
chr2	85662636	rs7589663	C	T	1960.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:101,86:0.46:187
chr2	85662650	rs6547618	A	G	1833.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:88,83:0.49:171
chr2	85766545	rs2289972	C	T	3029.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:144,139:0.49:283
chr2	85769246	rs1078005	G	A	4274.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr2	85769711	rs1078004	C	G	8517.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr2	85769975	rs2043675	A	G	806.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:35,36:0.51:71
chr2	85777270	rs2028898	G	A	1117.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:45,49:0.52:94
chr2	85779050	rs41290033	G	A	2455.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:160,124:0.44:284
chr2	85780107	rs10179904	G	A	5811.77	.	AC=1;AF=0.500;AN=2;DB;DP=560;set=Intersection	GT:AD:AF:DP	0/1:273,278:0.50:551
chr2	85780131	rs2592551	G	A	5813.77	.	AC=1;AF=0.500;AN=2;DB;DP=607;set=Intersection	GT:AD:AF:DP	0/1:306,296:0.49:602
chr2	85780536	rs699664	C	T	3088.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:147,145:0.50:292
chr2	85781318	rs1254896	T	G	7909.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr2	85788175	rs7568458	T	A	3787.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr2	85788401	rs11350741	GA	G	1013.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:3,43:0.93:46
chr2	85806068	rs3731827	T	C	2413.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr2	85806266	rs3731828	C	T	1208.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:91,62:0.41:153
chr2	85807082	rs1348818	T	A	206.96	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.748;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.35;ReadPosRankSum=1.028;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:3,17:0.85:20
chr2	85808594	rs11326680	CA	C	846.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.752;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=0.735;QD=11.00;ReadPosRankSum=-0.616;SOR=0.963;set=HC	GT:AD:AF:DP	0/1:12,65:0.84:77
chr2	85808737	rs1009	A	G	11923.77	.	AC=2;AF=1.00;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	1/1:0,438:1.00:438
chr2	85808871	rs1058588	C	T	7447.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr2	85811592	rs11311	C	T	176.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.982;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=3.624;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.07;ReadPosRankSum=-0.404;SOR=0.248;set=HC	GT:AD:AF:DP	0/1:14,11:0.44:25
chr2	85818797	rs2289976	G	A	3235.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr2	85818886	rs14976	C	T	9711.77	.	AC=2;AF=1.00;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	1/1:0,357:1.00:357
chr2	85820027	rs72843872	A	G	1143.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	85823167	rs35880310	TG	T	1904.73	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr2	85824084	rs2232748	G	C	13021.77	.	AC=2;AF=1.00;AN=2;DB;DP=469;set=Intersection	GT:AD:AF:DP	1/1:3,462:0.99:465
chr2	85826132	rs1044158	G	A	734.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.24;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	85826721	rs11891495	G	A	10805.77	.	AC=2;AF=1.00;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	1/1:2,407:1.00:409
chr2	85828014	rs6733550	T	G	1435.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr2	85848747	rs35865728	CT	C	1921.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.638;ClippingRankSum=0.000;DB;DP=250;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=0.867;QD=10.22;ReadPosRankSum=1.084;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:39,149:0.79:188
chr2	85863116	.	GTTTA	GTA,G	6941.73	.	AC=2,0;AF=1.00,0.00;ALERT;AN=2;DP=154;set=Intersection	GT:AF:DP	1/1:1.00:152
chr2	85863119	.	T	C	6949.77	.	AC=2;AF=1.00;ALERT;AN=2;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.72;SOR=1.874;set=HC	GT:AD:AF:DP	1/1:0,152:1.00:152
chr2	85863120	rs201820696	AAG	A	6943.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.23;SOR=1.798;set=HC	GT:AD:AF:DP	1/1:0,157:1.00:157
chr2	85863121	.	AG	CA	2947	.	AC=2;AF=1.00;AN=2;BRF=0.44;FR=1.0000;HP=1;HapScore=1;MGOF=2;MMLQ=26;MQ=59.95;NF=81;NR=36;PP=2947;QD=20;SC=GCATGGTTTAAGTTAACTCTA;SbPval=0.54;Source=Platypus;TC=135;TCF=93;TCR=42;TR=117;WE=85863130;WS=85863106;set=Platypus	GT:AD:AF:DP	1/1:18,117:0.87:135
chr2	85890758	rs2304566	T	C	9523.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr2	85890771	rs893159	T	G	9145.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr2	85893616	.	CTGTG	C,CTG	1512.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.225;ClippingRankSum=0.000;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=30.25;ReadPosRankSum=1.667;SOR=1.143;set=HC	GT:AD:AF:DP	1/2:1,13,36:0.26,0.72:50
chr2	85894308	rs3024798	G	T	2102.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:141,108:0.43:249
chr2	85895338	rs2077079	T	G	1501.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:54,71:0.57:125
chr2	85921353	rs1866140	G	T	379.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:19,18:0.49:37
chr2	85921389	rs1866139	G	C	586.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:31,27:0.47:58
chr2	85921992	rs2043760	T	C	546.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	85924729	rs11127	C	T	3698.77	.	AC=1;AF=0.500;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	0/1:194,177:0.48:371
chr2	85924899	rs1437742	T	A	981.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:44,42:0.49:86
chr2	85925529	rs4240200	A	G	3674.77	.	AC=1;AF=0.500;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	0/1:233,172:0.42:405
chr2	85925667	rs4240201	G	A	7134.77	.	AC=1;AF=0.500;AN=2;DB;DP=752;set=Intersection	GT:AD:AF:DP	0/1:395,345:0.47:740
chr2	85925680	rs4240202	T	G	6833.77	.	AC=1;AF=0.500;AN=2;DB;DP=723;set=Intersection	GT:AD:AF:DP	0/1:379,337:0.47:716
chr2	85925756	rs7908	C	G	6415.77	.	AC=1;AF=0.500;AN=2;DB;DP=646;set=Intersection	GT:AD:AF:DP	0/1:323,319:0.50:642
chr2	85925848	rs12845	C	G	3975.77	.	AC=1;AF=0.500;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	0/1:194,189:0.49:383
chr2	86075582	rs11694145	C	T	4791.77	.	AC=1;AF=0.500;AN=2;DB;DP=453;set=Intersection	GT:AD:AF:DP	0/1:217,227:0.51:444
chr2	86088311	rs1138484	T	C	1234.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:52,60:0.54:112
chr2	86094686	rs62147538	C	T	1039.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:79,53:0.40:132
chr2	86107951	.	G	GA	85.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.021;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=1.819;QD=1.59;ReadPosRankSum=-2.338;SOR=0.880;set=HC	GT:AD:AF:DP	0/1:41,13:0.24:54
chr2	86258784	rs2278536	T	G	1232.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:88,63:0.42:151
chr2	86259443	rs2276626	C	T	22765.77	.	AC=2;AF=1.00;AN=2;DB;DP=856;set=Intersection	GT:AD:AF:DP	1/1:0,852:1.00:852
chr2	86269163	rs34892520	C	T	1588.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:100,76:0.43:176
chr2	86272191	rs7572386	G	A	250.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:11,11:0.50:22
chr2	86275985	rs2289239	A	G	2905.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:104,131:0.56:235
chr2	86279837	rs35618928	G	C	317.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.044;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=1.376;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.06;ReadPosRankSum=1.039;SOR=0.395;set=HC	GT:AD:AF:DP	0/1:29,16:0.36:45
chr2	86292415	rs112708556	C	T	4536.77	.	AC=1;AF=0.500;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	0/1:196,210:0.52:406
chr2	86292656	rs311563	C	T	2789.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:164,133:0.45:297
chr2	86302103	rs3815840	A	G	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.054;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.78;ReadPosRankSum=-1.097;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:15,4:0.21:19
chr2	86304932	.	GCGCACACACACA	G	1540	.	AC=1;AF=0.500;AN=2;BRF=0.26;FR=0.5000;HP=2;HapScore=3;MGOF=23;MMLQ=21;MQ=58.92;NF=9;NR=2;PP=1540;QD=141.636363636;SC=GCACGCGCGCGCGCACACACA;SbPval=0.35;Source=Platypus;TC=27;TCF=24;TCR=3;TR=11;WE=86304951;WS=86304924;set=Platypus	GT:AD:AF:DP	0/1:16,11:0.41:27
chr2	86304934	rs11127014	G	A	135.73	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:3,8:0.73:11
chr2	86305123	rs2288117	T	C	2601.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:149,117:0.44:266
chr2	86310110	rs2288118	C	T	1311.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:34,55:0.62:89
chr2	86315741	rs2288120	C	T	1316.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:101,66:0.40:167
chr2	86317037	rs4832242	G	C	2644.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:146,126:0.46:272
chr2	86332809	rs4832245	G	A	5426.77	.	AC=1;AF=0.500;AN=2;DB;DP=562;set=Intersection	GT:AD:AF:DP	0/1:293,260:0.47:553
chr2	86334199	rs2367201	G	A	2929.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.080;ClippingRankSum=0.000;DB;DP=255;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.06;ReadPosRankSum=-0.863;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:113,130:0.53:243
chr2	86338249	rs78436829	G	A	2177.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:97,98:0.50:195
chr2	86343476	rs4832022	C	A	282.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:14,12:0.46:26
chr2	86343494	rs4832248	G	A	551.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:18,24:0.57:42
chr2	86344367	rs2059353	T	C	449.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:15,21:0.58:36
chr2	86346308	rs6715623	G	A	574.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:32,24:0.43:56
chr2	86352010	rs4832250	G	T	630.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:17,30:0.64:47
chr2	86352785	rs4618054	G	A	1708.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:93,77:0.45:170
chr2	86352825	rs6740228	C	T	1782.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:93,81:0.47:174
chr2	86359405	rs1559515	G	T	3032.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:151,144:0.49:295
chr2	86362204	rs7606421	C	T	1033.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:61,50:0.45:111
chr2	86363074	rs3770069	A	G	4202.77	.	AC=1;AF=0.500;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	0/1:180,206:0.53:386
chr2	86363855	rs7558040	G	C	617.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:20,23:0.53:43
chr2	86364706	rs56274257	TG	T	865.73	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:26,30:0.54:56
chr2	86371883	rs8244	T	C	1114.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:80,59:0.42:139
chr2	86385668	rs1057893	T	C	1113.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.556;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.84;ReadPosRankSum=-0.741;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:23,28:0.55:51
chr2	86385682	rs34945759	TC	T	377.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.679;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=6.172;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.32;ReadPosRankSum=-0.984;SOR=1.681;set=HC	GT:AD:AF:DP	0/1:41,30:0.42:71
chr2	86385886	rs6739460	A	G	2025.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:95,98:0.51:193
chr2	86398074	rs2288115	A	G	150.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:6,7:0.54:13
chr2	86398291	rs2288113	G	A	527.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:13,21:0.62:34
chr2	86406438	rs6547663	A	G	177.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:9,10:0.53:19
chr2	86408385	rs6731995	A	G	2171.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:113,108:0.49:221
chr2	86420255	rs11897696	G	A	735.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:18,27:0.60:45
chr2	86422416	rs17551822	T	C	8970.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.391;ClippingRankSum=0.000;DB;DP=594;ExcessHet=3.0103;FS=1.121;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.15;ReadPosRankSum=-1.486;SOR=0.792;set=HC	GT:AD:AF:DP	0/1:348,244:0.41:592
chr2	86422421	rs17551815	T	G	8984.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.705;ClippingRankSum=0.000;DB;DP=612;ExcessHet=3.0103;FS=1.127;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.71;ReadPosRankSum=-0.394;SOR=0.796;set=HC	GT:AD:AF:DP	0/1:367,244:0.40:611
chr2	86433240	rs10901	C	T	3511.77	.	AC=1;AF=0.500;AN=2;DB;DP=468;set=Intersection	GT:AD:AF:DP	0/1:289,175:0.38:464
chr2	86434569	rs9309634	T	C	1116.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr2	86437551	rs7565645	T	G	3478.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr2	86440718	rs11944	T	C	2044.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:112,103:0.48:215
chr2	86479035	rs12988844	A	G	1316.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr2	86479287	rs17438687	G	T	5169.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr2	86481835	rs2276625	C	T	5819.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr2	86491245	rs1863056	C	T	10589.77	.	AC=2;AF=1.00;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	1/1:0,413:1.00:413
chr2	86509267	rs1863058	G	A	8168.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr2	86509388	rs1863059	T	G	5746.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:1,205:1.00:206
chr2	86683539	.	AT	A	32.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.812;ClippingRankSum=-0.000;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.07;MQRankSum=0.524;QD=3.27;ReadPosRankSum=-2.515;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:4,6:0.60:10
chr2	86683642	rs2030259	A	G	1430.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr2	86691250	rs12714187	G	A	7538.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr2	86705565	rs2292887	T	C	3597.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr2	86707504	rs4832290	T	C	4845.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr2	86716518	rs113985244	G	A	3624.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:156,168:0.52:324
chr2	86737649	rs966477	G	A	4965.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr2	86756209	rs1036940	C	G	783.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	86756280	rs9284788	G	A	2219.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr2	86850022	rs396354	T	C	5229.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr2	86947783	rs76239019	C	T	1428.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr2	86978895	rs4832311	G	T	119.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr2	86979093	rs10186663	G	A	2354.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr2	86992337	rs3840984	T	TAA	5606.73	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr2	86998659	.	CTT	C,CT	4969.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.767;ClippingRankSum=0.000;DP=471;ExcessHet=3.0103;FS=1.800;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.11;MQRankSum=0.866;QD=11.37;ReadPosRankSum=-0.826;SOR=0.500;set=HC	GT:AD:AF:DP	1/2:69,101,267:0.23,0.61:437
chr2	87015633	rs71378806	T	TGA	8751.73	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr2	87048702	rs13001400	T	G	4030.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr2	87049358	rs373630399	GA	G	59.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.443;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=2.047;QD=0.63;ReadPosRankSum=-0.214;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:74,21:0.22:95
chr2	87060318	.	C	CT	134.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.496;ClippingRankSum=0.000;DP=141;ExcessHet=3.0103;FS=1.150;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.62;ReadPosRankSum=-0.007;SOR=0.990;set=HC	GT:AD:AF:DP	0/1:61,22:0.27:83
chr2	87069379	rs4322832	G	A	3255.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.38;QD=28.81;SOR=1.129;set=HC	GT:AD:AF:DP	1/1:0,113:1.00:113
chr2	87069431	rs4514875	C	T	3923.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.48;QD=29.50;SOR=1.055;set=HC	GT:AD:AF:DP	1/1:0,133:1.00:133
chr2	87073743	rs4971887	A	G	3066.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr2	87085598	rs28727404	T	C	1018.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.62;QD=28.30;SOR=5.784;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr2	87088964	rs62146888	A	G	142.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.15;QD=23.81;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	87092750	rs374275493	C	CAA	384.94	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.127;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=2.199;MLEAC=1;MLEAF=0.500;MQ=50.49;MQRankSum=-3.798;QD=12.42;ReadPosRankSum=-0.540;SOR=0.184;set=HC	GT:AD:AF:DP	0/1:8,23:0.74:31
chr2	87092865	rs10195435	C	T	3990.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.11;QD=26.08;SOR=0.816;set=HC	GT:AD:AF:DP	1/1:0,153:1.00:153
chr2	87276811	rs200334386	T	C	120.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.886;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.13;MQRankSum=-2.947;QD=8.63;ReadPosRankSum=-0.170;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:7,7:0.50:14
chr2	87303060	rs79162177	C	G	588.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:49,31:0.39:80
chr2	87356024	rs3101261	C	A	750.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.614;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=15.015;MLEAC=1;MLEAF=0.500;MQ=56.92;MQRankSum=-9.179;QD=4.27;ReadPosRankSum=0.172;SOR=0.160;set=HC	GT:AD:AF:DP	0/1:142,34:0.19:176
chr2	87356038	rs201869954	G	A	665.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.700;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=15.451;MLEAC=1;MLEAF=0.500;MQ=57.36;MQRankSum=-8.829;QD=5.55;ReadPosRankSum=-1.353;SOR=0.082;set=HC	GT:AD:AF:DP	0/1:97,23:0.19:120
chr2	87929349	.	T	C	220.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.332;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.58;MQRankSum=-1.147;QD=4.42;ReadPosRankSum=0.474;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:35,15:0.30:50
chr2	88272798	rs201020598	C	T	311.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:50,21:0.30:71
chr2	88328183	rs60603649	T	TTC	165.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.326;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.72;ReadPosRankSum=-0.211;SOR=1.371;set=HC	GT:AD:AF:DP	0/1:7,12:0.63:19
chr2	88328208	rs12328217	G	A	56.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:16,6:0.27:22
chr2	88387403	rs1542088	C	A	2778.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:1,97:0.99:98
chr2	88409719	rs35206605	A	AGTGT	378.19	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.132;ClippingRankSum=-0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=29.09;ReadPosRankSum=-1.375;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:4,9:0.69:13
chr2	88410102	rs2289497	C	G	1776.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:80,77:0.49:157
chr2	88411793	rs2970888	C	A	3767.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:157,171:0.52:328
chr2	88424066	rs2241883	T	C	2992.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:122,139:0.53:261
chr2	88472791	rs4129190	G	A	1187.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:75,59:0.44:134
chr2	88474370	rs2139100	A	G	2063.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:75,93:0.55:168
chr2	88474753	rs115656871	T	C	1617.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:63,74:0.54:137
chr2	88485392	rs1878810	G	C	1221.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:50,52:0.51:102
chr2	88748390	rs4972212	A	T	3449.77	.	AC=1;AF=0.500;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	0/1:198,163:0.45:361
chr2	88751751	rs11456039	A	AG	113	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.25;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr2	88825315	rs34809896	G	GT	533.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.680;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=1.152;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.000;QD=6.13;ReadPosRankSum=-1.830;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:42,45:0.52:87
chr2	88825334	rs35903656	CAAG	C	846.73	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:41,25:0.38:66
chr2	88826184	rs76507069	AT	A	781.73	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:39,50:0.56:89
chr2	88826219	rs56783496	G	A	656.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:17,27:0.61:44
chr2	88870632	rs4972221	A	T	1604.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr2	88874891	rs1805165	C	A	11376.77	.	AC=2;AF=1.00;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	1/1:0,415:1.00:415
chr2	88879131	rs1805164	T	C	4139.77	.	AC=1;AF=0.500;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	0/1:243,190:0.44:433
chr2	88882942	rs6750998	T	A	1038.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:73,52:0.42:125
chr2	88895123	rs13045	T	C	10641.77	.	AC=2;AF=1.00;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	1/1:0,402:1.00:402
chr2	88895351	rs7571971	T	C	6262.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr2	88926729	rs72416210	CCAG	C	2495.73	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:51,64:0.56:115
chr2	88997878	rs908277	C	T	1171.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:35,46:0.57:81
chr2	88999476	rs1158603	G	A	4853.77	.	AC=1;AF=0.500;AN=2;DB;DP=483;set=Intersection	GT:AD:AF:DP	0/1:238,235:0.50:473
chr2	89160889	rs232224	G	T	6854.77	.	AC=1;AF=0.500;AN=2;DB;DP=751;set=Intersection	GT:AD:AF:DP	0/1:406,331:0.45:737
chr2	89161322	rs232223	C	G	6204.77	.	AC=1;AF=0.500;AN=2;DB;DP=584;set=Intersection	GT:AD:AF:DP	0/1:294,284:0.49:578
chr2	89161547	rs232222	A	G	1328.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:66,55:0.45:121
chr2	89512775	rs145409842	T	G	1149.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:62,46:0.43:108
chr2	90007670	rs2847917	G	A	3806.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr2	90008208	rs138920656	T	G	4332.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:77,178:0.70:255
chr2	90008243	rs79315122	G	C	564.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:96,27:0.22:123
chr2	90008287	rs147071425	A	C	972.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:19,37:0.66:56
chr2	90043509	rs201839533	C	T	590.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.45;QD=25.69;SOR=1.708;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	90108416	rs859744	G	A	2856.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr2	90108778	rs859745	G	T	7484.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr2	91766685	rs2258279	GA	TG	5715.77	.	AC=1;AF=0.500;AN=2;DB;DP=419;JOINED;set=Intersection	GT:AD:AF:DP	0/1:245,164:0.40:409
chr2	91767199	rs2558010	A	C	1518.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:93,63:0.40:156
chr2	91767507	rs2580541	T	A	1813.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.766;ClippingRankSum=0.000;DB;DP=363;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.59;MQRankSum=-0.661;QD=5.14;ReadPosRankSum=0.990;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:252,101:0.29:353
chr2	91809227	rs2536993	A	G	4210.77	.	AC=1;AF=0.500;AN=2;DB;DP=589;set=Intersection	GT:AD:AF:DP	0/1:358,221:0.38:579
chr2	91809324	rs2536994	C	T	9271.77	.	AC=1;AF=0.500;AN=2;DB;DP=1653;set=Intersection	GT:AD:AF:DP	0/1:1120,524:0.32:1644
chr2	91809385	rs55812636	C	G	9393.77	.	AC=1;AF=0.500;AN=2;DB;DP=1539;set=Intersection	GT:AD:AF:DP	0/1:1061,475:0.31:1536
chr2	91809404	rs55918232	G	C	8886.77	.	AC=1;AF=0.500;AN=2;DB;DP=1362;set=Intersection	GT:AD:AF:DP	0/1:918,442:0.33:1360
chr2	91809456	rs2191971	T	G	3938.77	.	AC=1;AF=0.500;AN=2;DB;DP=811;set=Intersection	GT:AD:AF:DP	0/1:588,222:0.27:810
chr2	91809468	.	C	CTAA	8870.73	.	AC=1;AF=0.500;AN=2;DP=709;set=Intersection	GT:AD:AF:DP	0/1:457,244:0.35:701
chr2	91809470	rs2386154	G	A	8964.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.488;ClippingRankSum=0.000;DB;DP=680;ExcessHet=3.0103;FS=1.212;MLEAC=1;MLEAF=0.500;MQ=57.85;MQRankSum=-18.892;QD=13.18;ReadPosRankSum=9.031;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:440,240:0.35:680
chr2	91809472	.	G	GTGACTAACAA	9064.73	.	AC=1;AF=0.500;AN=2;DP=668;set=Intersection	GT:AD:AF:DP	0/1:430,238:0.36:668
chr2	91925022	rs28577290	C	A	2669.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.390;ClippingRankSum=0.000;DB;DP=256;ExcessHet=3.0103;FS=32.412;MLEAC=1;MLEAF=0.500;MQ=46.85;MQRankSum=-3.288;QD=10.43;ReadPosRankSum=2.568;SOR=0.220;set=HC	GT:AD:AF:DP	0/1:132,124:0.48:256
chr2	91925139	rs62143830	C	G	775.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.980;ClippingRankSum=0.000;DB;DP=408;ExcessHet=3.0103;FS=72.708;MLEAC=1;MLEAF=0.500;MQ=47.04;MQRankSum=-12.960;QD=1.90;ReadPosRankSum=-4.125;SOR=8.103;set=HC	GT:AD:AF:DP	0/1:346,62:0.15:408
chr2	91925151	rs114729754	C	T	402.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=10.549;ClippingRankSum=0.000;DB;DP=388;ExcessHet=3.0103;FS=128.421;MLEAC=1;MLEAF=0.500;MQ=47.46;MQRankSum=-12.263;QD=1.04;ReadPosRankSum=-2.344;SOR=7.719;set=HC	GT:AD:AF:DP	0/1:339,49:0.13:388
chr2	95537245	rs4854234	C	G	1423.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:65,67:0.51:132
chr2	95537572	rs4854235	C	T	4311.77	.	AC=1;AF=0.500;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	0/1:241,204:0.46:445
chr2	95537622	rs11164112	A	G	4969.77	.	AC=1;AF=0.500;AN=2;DB;DP=467;set=Intersection	GT:AD:AF:DP	0/1:224,236:0.51:460
chr2	95537871	rs11483811	G	GC	405.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.760;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=1.986;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.54;ReadPosRankSum=1.750;SOR=1.206;set=HC	GT:AD:AF:DP	0/1:36,26:0.42:62
chr2	95539833	rs111469930	C	T	2619.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:179,136:0.43:315
chr2	95541465	.	TGCC	T	416.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.454;ClippingRankSum=0.000;DP=646;ExcessHet=3.0103;FS=3.566;MLEAC=1;MLEAF=0.500;MQ=59.31;MQRankSum=-24.030;QD=0.67;ReadPosRankSum=1.972;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:569,52:0.08:621
chr2	95541471	.	G	GGCA	467.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.243;ClippingRankSum=0.000;DP=596;ExcessHet=3.0103;FS=3.586;MLEAC=1;MLEAF=0.500;MQ=59.30;MQRankSum=-24.063;QD=0.79;ReadPosRankSum=1.939;SOR=0.799;set=HC	GT:AD:AF:DP	0/1:542,52:0.09:594
chr2	95541473	rs112108710	C	T	506.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.383;ClippingRankSum=0.000;DB;DP=577;ExcessHet=3.0103;FS=4.976;MLEAC=1;MLEAF=0.500;MQ=59.30;MQRankSum=-23.668;QD=0.88;ReadPosRankSum=0.966;SOR=0.869;set=HC	GT:AD:AF:DP	0/1:524,51:0.09:575
chr2	95830652	rs6719142	T	C	1290.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr2	95830737	rs11395151	C	CA	3043.73	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr2	95846158	rs3112230	T	C	836.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	95847040	rs10578519	TGCG	T	17176.73	.	AC=2;AF=1.00;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	1/1:0,386:1.00:386
chr2	95944902	rs61086044	A	AC	1707.73	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr2	95945568	rs7585914	G	A	5073.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr2	95945830	rs7586229	G	T	792.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	95947085	rs12992066	A	G	12771.77	.	AC=2;AF=1.00;AN=2;DB;DP=495;set=Intersection	GT:AD:AF:DP	1/1:2,486:1.00:488
chr2	95952177	rs7602232	C	G	2568.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr2	95963242	rs2248415	C	G	2195.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.856;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.90;MQRankSum=0.000;QD=28.52;ReadPosRankSum=-0.476;SOR=4.461;set=HC	GT:AD:AF:DP	1/1:1,76:0.99:77
chr2	95976123	.	C	T	261.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.851;ClippingRankSum=0.000;DP=464;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.57;ReadPosRankSum=0.308;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:399,61:0.13:460
chr2	96012736	rs200411648	G	A	1959.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:142,95:0.40:237
chr2	96012907	rs7602807	C	G	12708.77	.	AC=2;AF=1.00;AN=2;DB;DP=490;set=Intersection	GT:AD:AF:DP	1/1:2,479:1.00:481
chr2	96048862	rs58372613	C	T	93.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.485;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=15.947;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.26;ReadPosRankSum=-0.268;SOR=1.036;set=HC	GT:AD:AF:DP	0/1:16,6:0.27:22
chr2	96049917	.	T	TACACAC	286.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.741;ClippingRankSum=-0.000;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.58;MQRankSum=-0.000;QD=13.03;ReadPosRankSum=0.775;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:14,8:0.36:22
chr2	96076409	rs6577014	C	T	3912.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr2	96078617	.	C	T	5112.77	.	AC=1;AF=0.500;AN=2;DP=469;set=Intersection	GT:AD:AF:DP	0/1:222,241:0.52:463
chr2	96504594	rs11676926	C	T	5403.77	.	AC=1;AF=0.500;AN=2;DB;DP=528;set=Intersection	GT:AD:AF:DP	0/1:261,264:0.50:525
chr2	96514492	rs150195180	C	T	259.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:15,9:0.38:24
chr2	96514607	.	T	TA	449.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.866;ClippingRankSum=0.000;DP=90;ExcessHet=3.0103;FS=2.954;MLEAC=1;MLEAF=0.500;MQ=60.84;MQRankSum=3.181;QD=5.23;ReadPosRankSum=-0.629;SOR=1.100;set=HC	GT:AD:AF:DP	0/1:50,36:0.42:86
chr2	96555522	rs12471925	C	A	2348.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:201,116:0.37:317
chr2	96601240	rs199988716	G	A	4568.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.638;ClippingRankSum=0.000;DB;DP=375;ExcessHet=3.0103;FS=11.347;MLEAC=1;MLEAF=0.500;MQ=45.95;MQRankSum=-12.988;QD=12.18;ReadPosRankSum=-2.312;SOR=1.162;set=HC	GT:AD:AF:DP	0/1:173,202:0.54:375
chr2	96601296	rs145876416	A	ATGATTAAT	5413.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.008;ClippingRankSum=0.000;DB;DP=521;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.27;MQRankSum=-16.547;QD=10.49;ReadPosRankSum=1.987;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:255,261:0.51:516
chr2	96601312	rs201144574	G	A	5254.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.327;ClippingRankSum=0.000;DB;DP=561;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.48;MQRankSum=-15.479;QD=9.37;ReadPosRankSum=0.458;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:277,284:0.51:561
chr2	96601345	rs149389865	T	C	5025.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.934;ClippingRankSum=0.000;DB;DP=426;ExcessHet=3.0103;FS=1.135;MLEAC=1;MLEAF=0.500;MQ=46.55;MQRankSum=-15.332;QD=11.83;ReadPosRankSum=0.342;SOR=0.808;set=HC	GT:AD:AF:DP	0/1:167,258:0.61:425
chr2	96601364	rs148485539	C	T	3969.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.390;ClippingRankSum=0.000;DB;DP=323;ExcessHet=3.0103;FS=6.837;MLEAC=1;MLEAF=0.500;MQ=46.69;MQRankSum=-12.632;QD=12.29;ReadPosRankSum=2.900;SOR=1.032;set=HC	GT:AD:AF:DP	0/1:143,180:0.56:323
chr2	96601489	.	G	A	91.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.072;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;FS=1.869;MLEAC=1;MLEAF=0.500;MQ=47.85;MQRankSum=-4.430;QD=2.04;ReadPosRankSum=-1.343;SOR=0.317;set=HC	GT:AD:AF:DP	0/1:39,6:0.13:45
chr2	96601491	.	A	G	91.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.249;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;FS=1.914;MLEAC=1;MLEAF=0.500;MQ=48.15;MQRankSum=-4.340;QD=1.99;ReadPosRankSum=-0.345;SOR=0.300;set=HC	GT:AD:AF:DP	0/1:40,6:0.13:46
chr2	96601513	rs79147644	C	T	170.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.966;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=6.978;MLEAC=1;MLEAF=0.500;MQ=47.89;MQRankSum=-4.431;QD=5.02;ReadPosRankSum=0.583;SOR=0.061;set=HC	GT:AD:AF:DP	0/1:24,10:0.29:34
chr2	96604473	rs75003856	T	A	1106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.718;ClippingRankSum=0.000;DB;DP=335;ExcessHet=3.0103;FS=6.230;MLEAC=1;MLEAF=0.500;MQ=56.31;MQRankSum=-2.132;QD=3.33;ReadPosRankSum=-0.332;SOR=1.317;set=HC	GT:AD:AF:DP	0/1:265,67:0.20:332
chr2	96604516	rs62154560	C	T	12159.77	.	AC=1;AF=0.500;AN=2;DB;DP=779;set=Intersection	GT:AD:AF:DP	0/1:179,525:0.75:704
chr2	96604591	rs62154561	A	G	27071.77	.	AC=1;AF=0.500;AN=2;DB;DP=1576;set=Intersection	GT:AD:AF:DP	0/1:393,1178:0.75:1571
chr2	96604632	rs62154562	A	T	21632.77	.	AC=1;AF=0.500;AN=2;DB;DP=1257;set=Intersection	GT:AD:AF:DP	0/1:344,913:0.73:1257
chr2	96604679	rs62154563	C	T	9097.77	.	AC=1;AF=0.500;AN=2;DB;DP=601;set=Intersection	GT:AD:AF:DP	0/1:200,391:0.66:591
chr2	96604730	rs113311459	T	C	3958.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=10.854;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=43.764;MLEAC=1;MLEAF=0.500;MQ=44.83;MQRankSum=-10.382;QD=20.62;ReadPosRankSum=0.980;SOR=6.055;set=HC	GT:AD:AF:DP	0/1:73,119:0.62:192
chr2	96605568	rs74785109	C	T	224.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:26,10:0.28:36
chr2	96606829	rs190428367	C	T	268.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.797;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=2.172;MLEAC=1;MLEAF=0.500;MQ=50.19;MQRankSum=-2.655;QD=12.80;ReadPosRankSum=-1.820;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:13,8:0.38:21
chr2	96606833	.	TGTTTC	T	401.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.858;ClippingRankSum=0.000;DP=26;ExcessHet=3.0103;FS=4.205;MLEAC=1;MLEAF=0.500;MQ=51.85;MQRankSum=-2.527;QD=15.45;ReadPosRankSum=-1.740;SOR=1.670;set=HC	GT:AD:AF:DP	0/1:17,9:0.35:26
chr2	96606839	.	T	TA	558.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.233;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;FS=4.265;MLEAC=1;MLEAF=0.500;MQ=51.49;MQRankSum=-2.750;QD=19.95;ReadPosRankSum=-1.201;SOR=1.721;set=HC	GT:AD:AF:DP	0/1:18,10:0.36:28
chr2	96606852	rs201301417	A	T	599.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.179;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.50;MQRankSum=-3.481;QD=15.78;ReadPosRankSum=-0.666;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:22,16:0.42:38
chr2	96606854	rs199773773	T	C	599.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.303;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=1.283;MLEAC=1;MLEAF=0.500;MQ=51.11;MQRankSum=-3.801;QD=14.99;ReadPosRankSum=-1.170;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:22,18:0.45:40
chr2	96606944	rs78739183	C	T	491.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.998;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=1.785;MLEAC=1;MLEAF=0.500;MQ=53.15;MQRankSum=-5.469;QD=5.23;ReadPosRankSum=0.343;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:62,32:0.34:94
chr2	96606952	rs139886833	TA	T	89.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.930;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.65;MQRankSum=-5.140;QD=1.02;ReadPosRankSum=1.578;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:68,20:0.23:88
chr2	96606985	rs79451673	T	C	319.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.393;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=5.779;MLEAC=1;MLEAF=0.500;MQ=55.26;MQRankSum=-6.027;QD=3.37;ReadPosRankSum=-2.206;SOR=1.451;set=HC	GT:AD:AF:DP	0/1:80,15:0.16:95
chr2	96606998	rs201633069	C	T	268.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.160;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=4.341;MLEAC=1;MLEAF=0.500;MQ=55.28;MQRankSum=-5.818;QD=2.99;ReadPosRankSum=-3.245;SOR=1.490;set=HC	GT:AD:AF:DP	0/1:77,13:0.14:90
chr2	96607003	.	G	A	381.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.945;ClippingRankSum=0.000;DP=85;ExcessHet=3.0103;FS=5.220;MLEAC=1;MLEAF=0.500;MQ=55.61;MQRankSum=-7.263;QD=4.49;ReadPosRankSum=-2.117;SOR=1.360;set=HC	GT:AD:AF:DP	0/1:67,18:0.21:85
chr2	96610329	rs201777230	G	C	2609.77	.	AC=1;AF=0.500;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	0/1:199,136:0.41:335
chr2	96610395	rs147285461	C	CA	5361.73	.	AC=1;AF=0.500;AN=2;DB;DP=645;set=Intersection	GT:AD:AF:DP	0/1:382,250:0.40:632
chr2	96610399	rs116594293	C	A	9309.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.489;ClippingRankSum=0.000;DB;DP=643;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.45;MQRankSum=-24.264;QD=14.52;ReadPosRankSum=9.251;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:390,251:0.39:641
chr2	96610410	rs77220524	T	A	9388.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.104;ClippingRankSum=0.000;DB;DP=640;ExcessHet=3.0103;FS=1.123;MLEAC=1;MLEAF=0.500;MQ=54.44;MQRankSum=-24.183;QD=14.69;ReadPosRankSum=6.072;SOR=0.618;set=HC	GT:AD:AF:DP	0/1:387,252:0.39:639
chr2	96610413	rs74491979	C	T	9373.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.179;ClippingRankSum=0.000;DB;DP=635;ExcessHet=3.0103;FS=1.124;MLEAC=1;MLEAF=0.500;MQ=54.39;MQRankSum=-24.070;QD=14.79;ReadPosRankSum=4.680;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:382,252:0.40:634
chr2	96610420	rs78473403	G	T	9391.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.129;ClippingRankSum=0.000;DB;DP=626;ExcessHet=3.0103;FS=1.773;MLEAC=1;MLEAF=0.500;MQ=54.31;MQRankSum=-23.864;QD=15.03;ReadPosRankSum=1.299;SOR=0.568;set=HC	GT:AD:AF:DP	0/1:373,252:0.40:625
chr2	96610455	.	C	A	229.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.905;ClippingRankSum=0.000;DP=423;ExcessHet=3.0103;FS=2.773;MLEAC=1;MLEAF=0.500;MQ=55.23;MQRankSum=-12.311;QD=0.56;ReadPosRankSum=-1.576;SOR=1.066;set=HC	GT:AD:AF:DP	0/1:357,56:0.14:413
chr2	96610479	rs200773992	A	G	1234.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:202,66:0.25:268
chr2	96610495	rs144198449	G	A	106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.442;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=12.285;MLEAC=1;MLEAF=0.500;MQ=57.79;MQRankSum=-12.358;QD=0.66;ReadPosRankSum=-4.471;SOR=2.382;set=HC	GT:AD:AF:DP	0/1:144,18:0.11:162
chr2	96610552	rs11897663	G	C	54.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.541;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.41;MQRankSum=-5.486;QD=0.93;ReadPosRankSum=-0.264;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:53,6:0.10:59
chr2	96610567	.	T	TAC	54.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.178;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.13;MQRankSum=-4.783;QD=1.03;ReadPosRankSum=0.113;SOR=0.562;set=HC	GT:AD:AF:DP	0/1:47,6:0.11:53
chr2	96610569	rs372181262	T	A	75.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.236;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.83;MQRankSum=-4.619;QD=1.43;ReadPosRankSum=-0.056;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:47,6:0.11:53
chr2	96610731	rs200547048	C	G	206.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:84,14:0.14:98
chr2	96610759	rs377016561	T	A	907.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.126;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=34.470;MLEAC=1;MLEAF=0.500;MQ=55.98;MQRankSum=-12.063;QD=6.09;ReadPosRankSum=-6.044;SOR=4.914;set=HC	GT:AD:AF:DP	0/1:117,32:0.21:149
chr2	96610768	rs376183764	T	G	1181.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.427;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=48.008;MLEAC=1;MLEAF=0.500;MQ=55.62;MQRankSum=-12.402;QD=6.91;ReadPosRankSum=-5.826;SOR=5.598;set=HC	GT:AD:AF:DP	0/1:131,40:0.23:171
chr2	96610787	rs112708872	C	CA	5314.73	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:181,109:0.38:290
chr2	96610806	rs369118326	AGAAAG	A	50.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.064;ClippingRankSum=0.000;DB;DP=651;ExcessHet=3.0103;FS=4.834;MLEAC=1;MLEAF=0.500;MQ=55.69;MQRankSum=-4.069;QD=0.08;ReadPosRankSum=-0.060;SOR=1.293;set=HC	GT:AD:AF:DP	0/1:512,101:0.16:613
chr2	96610809	rs369841640	AAG	A	1504.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=4.751;ClippingRankSum=0.000;DB;DP=648;ExcessHet=3.0103;FS=14.794;MLEAC=1;MLEAF=0.500;MQ=55.67;MQRankSum=-11.214;QD=2.42;ReadPosRankSum=-2.902;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:478,144:0.23:622
chr2	96610836	rs11893977	T	C	25787.77	.	AC=1;AF=0.500;AN=2;DB;DP=1319;set=Intersection	GT:AD:AF:DP	0/1:430,871:0.67:1301
chr2	96610899	rs62154593	T	C	67044.77	.	AC=1;AF=0.500;AN=2;DB;DP=2259;set=Intersection	GT:AD:AF:DP	0/1:554,1693:0.75:2247
chr2	96610921	rs62154594	T	G	67592.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.823;ClippingRankSum=0.000;DB;DP=2207;ExcessHet=3.0103;FS=0.627;MLEAC=1;MLEAF=0.500;MQ=57.69;MQRankSum=-15.830;QD=30.78;ReadPosRankSum=2.263;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:506,1690:0.77:2196
chr2	96610921	.	TTC	GTC,GTG	2962	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.47;FR=0.5000,0.5000;HP=1;HapScore=1;MGOF=59;MMLQ=22;MQ=56.09;NF=585,197;NR=569,180;PP=2962,1681;QD=20;SC=TTCTGAAATATTCTAGAAGAA;SbPval=0.54;Source=Platypus;TC=1512;TCF=761;TCR=751;TR=1154,377;WE=96610931;WS=96610911;set=Platypus	GT:AF:DP	0/1:0.76:1512
chr2	96610923	rs75080810	C	G	7654.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.219;ClippingRankSum=0.000;DB;DP=2191;ExcessHet=3.0103;FS=1.290;MLEAC=1;MLEAF=0.500;MQ=57.73;MQRankSum=-7.698;QD=3.52;ReadPosRankSum=3.788;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:1627,549:0.25:2176
chr2	96610952	rs62154595	T	C	35607.77	.	AC=1;AF=0.500;AN=2;DB;DP=1678;set=Intersection	GT:AD:AF:DP	0/1:376,1293:0.77:1669
chr2	96610958	rs79852024	G	T	423.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.809;ClippingRankSum=0.000;DB;DP=1540;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.90;MQRankSum=-2.918;QD=0.28;ReadPosRankSum=0.227;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:1346,186:0.12:1532
chr2	96611013	rs202100353	A	T	1903.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.188;ClippingRankSum=0.000;DB;DP=550;ExcessHet=3.0103;FS=0.881;MLEAC=1;MLEAF=0.500;MQ=53.13;MQRankSum=-1.095;QD=3.47;ReadPosRankSum=1.267;SOR=0.839;set=HC	GT:AD:AF:DP	0/1:430,119:0.22:549
chr2	96611018	rs62154596	G	A	12505.77	.	AC=1;AF=0.500;AN=2;DB;DP=500;set=Intersection	GT:AD:AF:DP	0/1:116,383:0.77:499
chr2	96614212	rs4907288	A	G	1727.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:68,73:0.52:141
chr2	96616310	rs139114553	C	T	335.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.275;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.51;MQRankSum=-2.565;QD=3.46;ReadPosRankSum=-0.692;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:82,15:0.15:97
chr2	96616313	.	A	ATT	2287.73	.	AC=1;AF=0.500;AN=2;DP=98;set=Intersection	GT:AD:AF:DP	0/1:42,56:0.57:98
chr2	96616320	rs4110270	A	G	275.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.438;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=1.585;MLEAC=1;MLEAF=0.500;MQ=51.71;MQRankSum=-3.592;QD=2.36;ReadPosRankSum=-1.657;SOR=1.152;set=HC	GT:AD:AF:DP	0/1:101,16:0.14:117
chr2	96616348	rs62154609	C	G	4730.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.366;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=14.652;MLEAC=1;MLEAF=0.500;MQ=50.71;MQRankSum=-12.770;QD=23.65;ReadPosRankSum=-0.858;SOR=1.716;set=HC	GT:AD:AF:DP	0/1:84,116:0.58:200
chr2	96616353	rs150793442	GT	G	2491.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.808;ClippingRankSum=0.000;DB;DP=215;ExcessHet=3.0103;FS=3.114;MLEAC=1;MLEAF=0.500;MQ=51.06;MQRankSum=-6.594;QD=11.64;ReadPosRankSum=0.661;SOR=1.017;set=HC	GT:AD:AF:DP	0/1:137,77:0.36:214
chr2	96616354	rs78161475	T	C	1366.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=5.053;ClippingRankSum=0.000;DB;DP=215;ExcessHet=3.0103;FS=7.679;MLEAC=1;MLEAF=0.500;MQ=51.06;MQRankSum=-6.819;QD=6.39;ReadPosRankSum=-2.724;SOR=1.445;set=HC	GT:AD:AF:DP	0/1:163,51:0.24:214
chr2	96616355	rs62154610	T	C	2503.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.179;ClippingRankSum=0.000;DB;DP=220;ExcessHet=3.0103;FS=3.025;MLEAC=1;MLEAF=0.500;MQ=51.28;MQRankSum=-6.359;QD=11.43;ReadPosRankSum=0.343;SOR=0.951;set=HC	GT:AD:AF:DP	0/1:139,80:0.37:219
chr2	96616378	rs62154611	C	T	6784.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:122,204:0.63:326
chr2	96616442	rs74960926	C	A	14308.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.224;ClippingRankSum=0.000;DB;DP=626;ExcessHet=3.0103;FS=3.264;MLEAC=1;MLEAF=0.500;MQ=53.59;MQRankSum=-18.580;QD=22.89;ReadPosRankSum=4.559;SOR=0.572;set=HC	GT:AD:AF:DP	0/1:260,365:0.58:625
chr2	96616448	rs76503749	G	T	14214.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.663;ClippingRankSum=0.000;DB;DP=627;ExcessHet=3.0103;FS=2.477;MLEAC=1;MLEAF=0.500;MQ=53.32;MQRankSum=-17.279;QD=22.71;ReadPosRankSum=4.359;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:265,361:0.58:626
chr2	96616485	rs78218362	C	G	10594.77	.	AC=1;AF=0.500;AN=2;DB;DP=566;set=Intersection	GT:AD:AF:DP	0/1:263,303:0.54:566
chr2	96616501	.	C	CAA	9645.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.121;ClippingRankSum=0.000;DP=514;ExcessHet=3.0103;FS=10.722;MLEAC=1;MLEAF=0.500;MQ=53.13;MQRankSum=-10.510;QD=18.80;ReadPosRankSum=-0.928;SOR=1.332;set=HC	GT:AD:AF:DP	0/1:259,254:0.50:513
chr2	96616505	rs373114066	AGC	A	9156.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.294;ClippingRankSum=0.000;DB;DP=488;ExcessHet=3.0103;FS=15.290;MLEAC=1;MLEAF=0.500;MQ=52.67;MQRankSum=-11.023;QD=18.80;ReadPosRankSum=-1.528;SOR=1.533;set=HC	GT:AD:AF:DP	0/1:256,231:0.47:487
chr2	96616532	rs112676430	T	G	6030.77	.	AC=1;AF=0.500;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	0/1:207,144:0.41:351
chr2	96616571	rs146478446	C	A	1515.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.164;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=30.249;MLEAC=1;MLEAF=0.500;MQ=46.14;MQRankSum=-10.318;QD=8.33;ReadPosRankSum=-2.516;SOR=2.972;set=HC	GT:AD:AF:DP	0/1:135,47:0.26:182
chr2	96616576	rs143490798	T	C	1566.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.870;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=22.210;MLEAC=1;MLEAF=0.500;MQ=45.82;MQRankSum=-10.244;QD=8.90;ReadPosRankSum=-3.118;SOR=2.521;set=HC	GT:AD:AF:DP	0/1:130,46:0.26:176
chr2	96616580	rs201649771	A	G	1397.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.121;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=20.220;MLEAC=1;MLEAF=0.500;MQ=45.64;MQRankSum=-9.887;QD=8.42;ReadPosRankSum=-2.557;SOR=2.331;set=HC	GT:AD:AF:DP	0/1:125,41:0.25:166
chr2	96616597	rs114583836	A	G	1110.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.191;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=5.515;MLEAC=1;MLEAF=0.500;MQ=46.66;MQRankSum=-9.100;QD=7.93;ReadPosRankSum=-1.024;SOR=1.266;set=HC	GT:AD:AF:DP	0/1:107,33:0.24:140
chr2	96616599	rs116630524	G	A	1074.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.296;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=4.205;MLEAC=1;MLEAF=0.500;MQ=46.91;MQRankSum=-9.107;QD=7.90;ReadPosRankSum=-0.441;SOR=1.137;set=HC	GT:AD:AF:DP	0/1:105,31:0.23:136
chr2	96616607	rs141967446	G	T	981.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.270;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.91;MQRankSum=-9.033;QD=7.67;ReadPosRankSum=-0.259;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:97,31:0.24:128
chr2	96616622	rs112338915	C	T	908.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:78,30:0.28:108
chr2	96616654	rs75283408	C	A	1454.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:47,36:0.43:83
chr2	96616667	rs77249402	A	C	1630.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:42,41:0.49:83
chr2	96616690	rs111409549	T	C	1978.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.013;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=13.174;MLEAC=1;MLEAF=0.500;MQ=52.56;MQRankSum=-0.961;QD=21.74;ReadPosRankSum=0.269;SOR=0.149;set=HC	GT:AD:AF:DP	0/1:41,50:0.55:91
chr2	96616947	rs74369410	G	A	1596.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.527;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.07;MQRankSum=-8.697;QD=18.57;ReadPosRankSum=-0.440;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:46,40:0.47:86
chr2	96616951	rs74904196	A	G	1716.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.517;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=6.372;MLEAC=1;MLEAF=0.500;MQ=51.33;MQRankSum=-8.638;QD=19.51;ReadPosRankSum=-1.641;SOR=0.194;set=HC	GT:AD:AF:DP	0/1:43,45:0.51:88
chr2	96616957	rs76255864	A	G	2127.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.842;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=10.689;MLEAC=1;MLEAF=0.500;MQ=51.75;MQRankSum=-9.345;QD=20.46;ReadPosRankSum=-1.129;SOR=0.166;set=HC	GT:AD:AF:DP	0/1:50,54:0.52:104
chr2	96616967	rs77784489	G	C	2988.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.758;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=14.214;MLEAC=1;MLEAF=0.500;MQ=51.72;MQRankSum=-10.070;QD=23.53;ReadPosRankSum=-1.957;SOR=0.159;set=HC	GT:AD:AF:DP	0/1:55,72:0.57:127
chr2	96616976	rs76077075	A	G	3851.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.891;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=23.726;MLEAC=1;MLEAF=0.500;MQ=52.00;MQRankSum=-10.463;QD=25.17;ReadPosRankSum=-2.108;SOR=0.093;set=HC	GT:AD:AF:DP	0/1:62,91:0.59:153
chr2	96616979	rs80105408	G	C	4162.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.060;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=26.634;MLEAC=1;MLEAF=0.500;MQ=52.71;MQRankSum=-10.096;QD=24.93;ReadPosRankSum=-1.785;SOR=0.092;set=HC	GT:AD:AF:DP	0/1:67,100:0.60:167
chr2	96616997	rs74701498	T	G	5091.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:98,149:0.60:247
chr2	96617023	rs78346055	C	A	9261.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.094;ClippingRankSum=0.000;DB;DP=349;ExcessHet=3.0103;FS=6.877;MLEAC=1;MLEAF=0.500;MQ=56.49;MQRankSum=-8.212;QD=26.77;ReadPosRankSum=0.885;SOR=0.442;set=HC	GT:AD:AF:DP	0/1:132,214:0.62:346
chr2	96617023	.	CAC	AAA	2944	.	AC=1;AF=0.500;AN=2;BRF=0.48;FR=0.5000;HP=3;HapScore=1;MGOF=82;MMLQ=23;MQ=55.51;NF=95;NR=52;PP=2944;QD=20;SC=GACTGTGTTTCACAAAGAAAA;SbPval=0.37;Source=Platypus;TC=295;TCF=199;TCR=96;TR=147;WE=96617055;WS=96617013;set=Platypus	GT:AD:AF:DP	1/0:148,147:0.50:295
chr2	96617025	rs72492186	C	A	9595.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.704;ClippingRankSum=0.000;DB;DP=375;ExcessHet=3.0103;FS=4.988;MLEAC=1;MLEAF=0.500;MQ=56.74;MQRankSum=-8.029;QD=25.80;ReadPosRankSum=0.556;SOR=0.486;set=HC	GT:AD:AF:DP	0/1:140,232:0.62:372
chr2	96617039	rs74263747	A	C	7814.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.204;ClippingRankSum=0.000;DB;DP=465;ExcessHet=3.0103;FS=0.424;MLEAC=1;MLEAF=0.500;MQ=57.43;MQRankSum=-8.288;QD=17.06;ReadPosRankSum=2.922;SOR=0.642;set=HC	GT:AD:AF:DP	0/1:180,278:0.61:458
chr2	96617047	.	A	C	931.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.476;ClippingRankSum=0.000;DP=504;ExcessHet=3.0103;FS=2.457;MLEAC=1;MLEAF=0.500;MQ=57.58;MQRankSum=-3.480;QD=1.86;ReadPosRankSum=1.423;SOR=0.940;set=HC	GT:AD:AF:DP	0/1:412,89:0.18:501
chr2	96617069	rs72935831	A	G	12180.77	.	AC=1;AF=0.500;AN=2;DB;DP=623;set=Intersection	GT:AD:AF:DP	0/1:299,319:0.52:618
chr2	96617090	rs72935833	A	G	12220.77	.	AC=1;AF=0.500;AN=2;DB;DP=667;set=Intersection	GT:AD:AF:DP	0/1:350,312:0.47:662
chr2	96617106	rs76943414	A	C	11264.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.644;ClippingRankSum=0.000;DB;DP=638;ExcessHet=3.0103;FS=2.461;MLEAC=1;MLEAF=0.500;MQ=58.33;MQRankSum=-9.471;QD=17.74;ReadPosRankSum=1.127;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:352,283:0.45:635
chr2	96617111	rs76474100	G	A	10423.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.383;ClippingRankSum=0.000;DB;DP=634;ExcessHet=3.0103;FS=3.255;MLEAC=1;MLEAF=0.500;MQ=58.24;MQRankSum=-8.945;QD=16.52;ReadPosRankSum=0.685;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:361,270:0.43:631
chr2	96617113	rs80297803	G	A	10362.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.004;ClippingRankSum=0.000;DB;DP=630;ExcessHet=3.0103;FS=3.215;MLEAC=1;MLEAF=0.500;MQ=58.23;MQRankSum=-8.602;QD=16.53;ReadPosRankSum=-0.026;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:360,267:0.43:627
chr2	96617125	rs75585230	T	C	9406.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.929;ClippingRankSum=0.000;DB;DP=612;ExcessHet=3.0103;FS=4.129;MLEAC=1;MLEAF=0.500;MQ=58.15;MQRankSum=-8.974;QD=15.45;ReadPosRankSum=-2.637;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:359,250:0.41:609
chr2	96617132	rs75695780	T	C	9138.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.539;ClippingRankSum=0.000;DB;DP=589;ExcessHet=3.0103;FS=6.049;MLEAC=1;MLEAF=0.500;MQ=58.07;MQRankSum=-9.400;QD=15.60;ReadPosRankSum=-3.942;SOR=0.649;set=HC	GT:AD:AF:DP	0/1:350,236:0.40:586
chr2	96617155	rs76752473	A	G	7030.77	.	AC=1;AF=0.500;AN=2;DB;DP=501;set=Intersection	GT:AD:AF:DP	0/1:310,190:0.38:500
chr2	96617194	rs75924615	A	G	5240.77	.	AC=1;AF=0.500;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	0/1:219,151:0.41:370
chr2	96617209	rs74343816	G	T	4069.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:167,108:0.39:275
chr2	96617228	rs78924901	T	A	507.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.150;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=13.198;MLEAC=1;MLEAF=0.500;MQ=52.71;MQRankSum=-5.816;QD=2.77;ReadPosRankSum=3.489;SOR=2.348;set=HC	GT:AD:AF:DP	0/1:149,34:0.19:183
chr2	96617231	rs2443879	G	A	2762.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.224;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=1.635;MLEAC=1;MLEAF=0.500;MQ=52.01;MQRankSum=-11.564;QD=16.45;ReadPosRankSum=0.447;SOR=0.922;set=HC	GT:AD:AF:DP	0/1:93,75:0.45:168
chr2	96617256	rs2438948	A	G	1308.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.825;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=16.257;MLEAC=1;MLEAF=0.500;MQ=53.56;MQRankSum=-9.339;QD=14.38;ReadPosRankSum=0.545;SOR=3.855;set=HC	GT:AD:AF:DP	0/1:58,33:0.36:91
chr2	96617262	rs199817817	A	G	1038.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.102;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=13.717;MLEAC=1;MLEAF=0.500;MQ=53.43;MQRankSum=-8.529;QD=13.67;ReadPosRankSum=-0.210;SOR=3.450;set=HC	GT:AD:AF:DP	0/1:48,28:0.37:76
chr2	96617304	rs79484660	A	T	280.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:23,12:0.34:35
chr2	96619612	rs143611798	C	T	97.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:123,22:0.15:145
chr2	96619641	rs200910276	AA	CT	2366.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;JOINED;set=Intersection	GT:AD:AF:DP	0/1:198,71:0.26:269
chr2	96619688	rs74946480	T	G	7843.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.031;ClippingRankSum=0.000;DB;DP=701;ExcessHet=3.0103;FS=15.615;MLEAC=1;MLEAF=0.500;MQ=52.16;MQRankSum=-17.021;QD=11.22;ReadPosRankSum=-5.843;SOR=1.565;set=HC	GT:AD:AF:DP	0/1:364,335:0.48:699
chr2	96619734	rs62154618	C	T	12856.77	.	AC=1;AF=0.500;AN=2;DB;DP=921;set=Intersection	GT:AD:AF:DP	0/1:412,505:0.55:917
chr2	96619735	rs200095242	A	G	601.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.760;ClippingRankSum=0.000;DB;DP=926;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.03;MQRankSum=-0.869;QD=0.65;ReadPosRankSum=1.360;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:795,128:0.14:923
chr2	96619774	rs77522461	G	A	12373.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.412;ClippingRankSum=0.000;DB;DP=783;ExcessHet=3.0103;FS=4.125;MLEAC=1;MLEAF=0.500;MQ=53.78;MQRankSum=-20.695;QD=16.24;ReadPosRankSum=5.569;SOR=0.482;set=HC	GT:AD:AF:DP	0/1:300,462:0.61:762
chr2	96619799	rs145806545	A	C	11841.77	.	AC=1;AF=0.500;AN=2;DB;DP=654;set=Intersection	GT:AD:AF:DP	0/1:212,428:0.67:640
chr2	96619831	rs76870447	T	C	6275.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.497;ClippingRankSum=0.000;DB;DP=414;ExcessHet=3.0103;FS=1.311;MLEAC=1;MLEAF=0.500;MQ=54.01;MQRankSum=-17.575;QD=15.46;ReadPosRankSum=0.584;SOR=0.821;set=HC	GT:AD:AF:DP	0/1:204,202:0.50:406
chr2	96619832	rs79037822	A	G	6604.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.544;ClippingRankSum=0.000;DB;DP=410;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.89;MQRankSum=-10.004;QD=20.26;ReadPosRankSum=-1.854;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:122,204:0.63:326
chr2	96619837	rs77007933	CA	GC	10385.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.383;ClippingRankSum=0.000;DB;DP=358;ExcessHet=3.0103;FS=3.927;JOINED;MLEAC=1;MLEAF=0.500;MQ=53.49;MQRankSum=-12.477;QD=29.51;ReadPosRankSum=0.678;SOR=0.992;set=HC	GT:AD:AF:DP	0/1:117,235:0.67:352
chr2	96619849	rs201387352	A	T	984.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.447;ClippingRankSum=0.000;DB;DP=279;ExcessHet=3.0103;FS=0.705;MLEAC=1;MLEAF=0.500;MQ=52.45;MQRankSum=-7.416;QD=3.57;ReadPosRankSum=1.835;SOR=0.596;set=HC	GT:AD:AF:DP	0/1:215,61:0.22:276
chr2	96619853	rs201388512	T	C	2371.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:153,98:0.39:251
chr2	96619873	rs111807008	C	A	1668.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:117,73:0.38:190
chr2	96657360	rs115480888	G	A	7456.77	.	AC=1;AF=0.500;AN=2;DB;DP=883;set=Intersection	GT:AD:AF:DP	0/1:491,381:0.44:872
chr2	96689633	rs367689667	C	T	326.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:28,19:0.40:47
chr2	96780716	rs2229169	T	G	9519.77	.	AC=1;AF=0.500;AN=2;DB;DP=1001;set=Intersection	GT:AD:AF:DP	0/1:513,467:0.48:980
chr2	96780986	rs29000568	C	CTCCTCCTCT	13322.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.149;ClippingRankSum=0.000;DB;DP=891;ExcessHet=3.0103;FS=0.526;MLEAC=1;MLEAF=0.500;MQ=60.86;MQRankSum=6.095;QD=16.93;ReadPosRankSum=3.321;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:425,362:0.46:787
chr2	96781986	rs3111873	G	C	244.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:14,13:0.48:27
chr2	96789787	rs893173	T	C	3142.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:139,140:0.50:279
chr2	96795608	rs1657502	T	G	1201.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:45,57:0.56:102
chr2	96795714	rs749459	G	A	1219.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:69,57:0.45:126
chr2	96795857	rs749458	T	C	2472.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:139,126:0.48:265
chr2	96795944	rs749457	A	G	1914.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:112,97:0.46:209
chr2	96798510	rs1168966	G	A	1670.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:78,73:0.48:151
chr2	96852842	rs367591402	GA	G	297.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.688;ClippingRankSum=0.000;DB;DP=271;ExcessHet=3.0103;FS=2.255;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=1.795;QD=1.23;ReadPosRankSum=0.035;SOR=0.494;set=HC	GT:AD:AF:DP	0/1:181,62:0.26:243
chr2	96874307	rs7559215	C	G	1492.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:57,72:0.56:129
chr2	96944553	rs772175	G	A	5308.77	.	AC=1;AF=0.500;AN=2;DB;DP=515;set=Intersection	GT:AD:AF:DP	0/1:254,256:0.50:510
chr2	96956315	rs772176	T	G	4715.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr2	96991492	rs772174	A	G	5848.77	.	AC=1;AF=0.500;AN=2;DB;DP=506;set=Intersection	GT:AD:AF:DP	0/1:234,264:0.53:498
chr2	97019881	rs200853064	A	G	2043.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:64,90:0.58:154
chr2	97166204	rs3731938	A	G	6900.77	.	AC=1;AF=0.500;AN=2;DB;DP=734;set=Intersection	GT:AD:AF:DP	0/1:385,345:0.47:730
chr2	97315570	rs17685664	C	T	357.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:28,16:0.36:44
chr2	97319534	rs17685766	G	C	287.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:14,14:0.50:28
chr2	97351840	rs7599598	A	G	3986.77	.	AC=1;AF=0.500;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	0/1:209,194:0.48:403
chr2	97353725	rs868168	G	A	2421.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:94,111:0.54:205
chr2	97357756	rs368566816	CG	C	122.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.344;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=11.611;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.12;ReadPosRankSum=0.225;SOR=0.015;set=HC	GT:AD:AF:DP	0/1:92,18:0.16:110
chr2	97360079	rs72809820	C	T	2636.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:152,139:0.48:291
chr2	97400324	rs6727384	A	G	3385.77	.	AC=1;AF=0.500;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	0/1:208,166:0.44:374
chr2	97403110	rs58361269	G	A	914.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:33,37:0.53:70
chr2	97463095	rs1318597	T	C	1667.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:47,60:0.56:107
chr2	97587049	rs34895357	T	C	3199.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr2	97595109	rs6725927	T	C	4650.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr2	97613616	rs1624844	T	C	7392.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.630;ClippingRankSum=0.000;DB;DP=292;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.40;ReadPosRankSum=1.863;SOR=0.817;set=HC	GT:AD:AF:DP	1/1:2,289:0.99:291
chr2	97613748	rs1623881	C	A	3690.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:2,135:0.99:137
chr2	97617140	rs1257019	T	C	10550.77	.	AC=2;AF=1.00;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	1/1:2,401:1.00:403
chr2	97617227	rs1257018	A	G	6284.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:2,242:0.99:244
chr2	97637516	rs6714860	T	C	3793.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr2	97637905	rs6715329	T	C	9535.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:0,346:1.00:346
chr2	97638038	rs1730120	A	G	2666.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr2	97643576	rs1796048	T	C	17876.77	.	AC=2;AF=1.00;AN=2;DB;DP=685;set=Intersection	GT:AD:AF:DP	1/1:2,654:1.00:656
chr2	97747978	rs1257094	C	T	2872.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.06;QD=31.92;SOR=1.508;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr2	97751782	rs62155549	TG	CA	5077.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=47.89;QD=46.16;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,110:1.00:110
chr2	97751786	rs62155551	G	A	5032.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.45;QD=45.34;SOR=1.350;set=HC	GT:AD:AF:DP	1/1:0,111:1.00:111
chr2	97757509	rs1257084	C	T	8945.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:0,328:1.00:328
chr2	97779487	rs141447363	GC	G	9126.73	.	AC=1;AF=0.500;AN=2;DB;DP=540;set=Intersection	GT:AD:AF:DP	0/1:265,269:0.50:534
chr2	97814956	rs4386368	G	A	2446.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr2	97817469	rs62153866	T	A	685.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:23,22:0.49:45
chr2	97817511	rs62153867	T	C	800.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.889;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=49.037;MLEAC=1;MLEAF=0.500;MQ=43.34;MQRankSum=-2.910;QD=9.89;ReadPosRankSum=-0.213;SOR=0.007;set=HC	GT:AD:AF:DP	0/1:39,42:0.52:81
chr2	97817545	rs80259985	A	T	218.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.162;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=30.004;MLEAC=1;MLEAF=0.500;MQ=41.30;MQRankSum=-3.202;QD=2.10;ReadPosRankSum=3.169;SOR=0.033;set=HC	GT:AD:AF:DP	0/1:82,22:0.21:104
chr2	97817563	rs112026456	C	CA	1171.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-5.535;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=68.306;MLEAC=1;MLEAF=0.500;MQ=40.81;MQRankSum=-3.815;QD=9.15;ReadPosRankSum=4.882;SOR=0.432;set=HC	GT:AD:AF:DP	0/1:92,36:0.28:128
chr2	97817564	rs33971912	C	T,CT	4602.73	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=40.81;QD=35.96;SOR=2.494;set=HC	GT:AD:AF:DP	1/2:0,36,92:0.28,0.72:128
chr2	97817578	rs113800206	T	C	982.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.149;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=34.559;MLEAC=1;MLEAF=0.500;MQ=46.54;MQRankSum=-5.801;QD=5.68;ReadPosRankSum=4.650;SOR=0.731;set=HC	GT:AD:AF:DP	0/1:139,34:0.20:173
chr2	97817726	.	G	GT	245.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.752;ClippingRankSum=0.000;DP=311;ExcessHet=3.0103;FS=1.389;MLEAC=1;MLEAF=0.500;MQ=59.67;MQRankSum=-4.128;QD=0.97;ReadPosRankSum=1.045;SOR=0.539;set=HC	GT:AD:AF:DP	0/1:204,50:0.20:254
chr2	97817801	rs113485498	C	G	541.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.175;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=10.405;MLEAC=1;MLEAF=0.500;MQ=57.91;MQRankSum=-9.192;QD=4.88;ReadPosRankSum=2.006;SOR=0.152;set=HC	GT:AD:AF:DP	0/1:90,21:0.19:111
chr2	97817811	rs377439829	T	C	568.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.959;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=12.161;MLEAC=1;MLEAF=0.500;MQ=57.63;MQRankSum=-9.147;QD=5.80;ReadPosRankSum=2.292;SOR=0.109;set=HC	GT:AD:AF:DP	0/1:79,19:0.19:98
chr2	97817817	rs77108155	T	C	549.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.735;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=11.737;MLEAC=1;MLEAF=0.500;MQ=57.30;MQRankSum=-9.149;QD=6.39;ReadPosRankSum=2.301;SOR=0.076;set=HC	GT:AD:AF:DP	0/1:69,17:0.20:86
chr2	97817821	rs370583449	C	T	477.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.432;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=11.596;MLEAC=1;MLEAF=0.500;MQ=57.23;MQRankSum=-9.037;QD=5.69;ReadPosRankSum=2.143;SOR=0.081;set=HC	GT:AD:AF:DP	0/1:67,17:0.20:84
chr2	97818078	rs201288058	A	G	663.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.088;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=50.44;MQRankSum=-6.164;QD=12.29;ReadPosRankSum=-1.637;SOR=0.498;set=HC	GT:AD:AF:DP	0/1:35,19:0.35:54
chr2	97818101	rs111932285	T	G	888.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:30,24:0.44:54
chr2	97818114	rs146739597	G	T	1025.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:40,30:0.43:70
chr2	97818146	rs145799985	G	A	2073.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.993;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=3.465;MLEAC=1;MLEAF=0.500;MQ=47.28;MQRankSum=-10.036;QD=16.86;ReadPosRankSum=1.250;SOR=0.421;set=HC	GT:AD:AF:DP	0/1:68,55:0.45:123
chr2	97818161	rs74715701	C	A	2690.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.075;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=7.237;MLEAC=1;MLEAF=0.500;MQ=47.23;MQRankSum=-11.124;QD=17.25;ReadPosRankSum=-0.066;SOR=0.341;set=HC	GT:AD:AF:DP	0/1:85,71:0.46:156
chr2	97818169	rs76008235	C	T	2705.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.555;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=7.005;MLEAC=1;MLEAF=0.500;MQ=47.25;MQRankSum=-11.269;QD=16.20;ReadPosRankSum=0.717;SOR=0.347;set=HC	GT:AD:AF:DP	0/1:96,71:0.43:167
chr2	97818188	rs141129874	T	C	2738.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.731;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=8.798;MLEAC=1;MLEAF=0.500;MQ=47.04;MQRankSum=-11.809;QD=14.72;ReadPosRankSum=0.529;SOR=0.333;set=HC	GT:AD:AF:DP	0/1:112,74:0.40:186
chr2	97818192	rs202154783	A	G	2721.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.215;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=5.326;MLEAC=1;MLEAF=0.500;MQ=47.08;MQRankSum=-11.832;QD=14.48;ReadPosRankSum=0.483;SOR=0.404;set=HC	GT:AD:AF:DP	0/1:114,74:0.39:188
chr2	97818197	rs200340181	G	T	2715.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.579;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=6.361;MLEAC=1;MLEAF=0.500;MQ=47.62;MQRankSum=-11.826;QD=14.07;ReadPosRankSum=1.215;SOR=0.385;set=HC	GT:AD:AF:DP	0/1:121,72:0.37:193
chr2	97818236	rs112647905	A	C	1624.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.892;ClippingRankSum=0.000;DB;DP=240;ExcessHet=3.0103;FS=18.099;MLEAC=1;MLEAF=0.500;MQ=49.99;MQRankSum=-11.216;QD=6.77;ReadPosRankSum=2.787;SOR=0.881;set=HC	GT:AD:AF:DP	0/1:182,58:0.24:240
chr2	97818260	.	GGC	G	1338.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.912;ClippingRankSum=0.000;DP=267;ExcessHet=3.0103;FS=13.830;MLEAC=1;MLEAF=0.500;MQ=52.00;MQRankSum=-10.897;QD=5.01;ReadPosRankSum=-1.427;SOR=1.122;set=HC	GT:AD:AF:DP	0/1:218,49:0.18:267
chr2	97818264	.	G	GTT	1276.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.727;ClippingRankSum=0.000;DP=260;ExcessHet=3.0103;FS=18.486;MLEAC=1;MLEAF=0.500;MQ=52.12;MQRankSum=-10.604;QD=4.91;ReadPosRankSum=-1.722;SOR=1.378;set=HC	GT:AD:AF:DP	0/1:214,46:0.18:260
chr2	97818283	rs112336445	G	C	608.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.144;ClippingRankSum=0.000;DB;DP=247;ExcessHet=3.0103;FS=20.833;MLEAC=1;MLEAF=0.500;MQ=53.88;MQRankSum=-8.795;QD=2.46;ReadPosRankSum=-4.234;SOR=2.126;set=HC	GT:AD:AF:DP	0/1:219,28:0.11:247
chr2	97818348	rs58438329	A	G	4728.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr2	97823971	rs13011421	T	C	5982.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:1,218:1.00:219
chr2	97827700	rs2924001	A	G	46.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.094;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=3.840;MLEAC=1;MLEAF=0.500;MQ=55.49;MQRankSum=-5.387;QD=1.02;ReadPosRankSum=0.719;SOR=1.457;set=HC	GT:AD:AF:DP	0/1:39,7:0.15:46
chr2	97827737	rs76168297	C	T	689.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.369;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=0.896;MLEAC=1;MLEAF=0.500;MQ=50.89;MQRankSum=-5.664;QD=7.42;ReadPosRankSum=-1.332;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:68,25:0.27:93
chr2	97827757	rs76324746	A	G	304.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.779;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=0.817;MLEAC=1;MLEAF=0.500;MQ=49.97;MQRankSum=-6.076;QD=2.65;ReadPosRankSum=-1.364;SOR=0.590;set=HC	GT:AD:AF:DP	0/1:88,27:0.23:115
chr2	97827787	rs113653147	G	A	1580.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.525;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=2.283;MLEAC=1;MLEAF=0.500;MQ=50.02;MQRankSum=-3.727;QD=11.71;ReadPosRankSum=-1.139;SOR=0.919;set=HC	GT:AD:AF:DP	0/1:88,47:0.35:135
chr2	97827800	rs111338734	A	G	1553.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.715;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=2.260;MLEAC=1;MLEAF=0.500;MQ=50.22;MQRankSum=-3.098;QD=11.26;ReadPosRankSum=0.378;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:89,49:0.36:138
chr2	97827818	rs34725305	C	CT	1519.73	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:27,84:0.76:111
chr2	97827839	rs199729690	G	A	848.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:62,42:0.40:104
chr2	97827912	rs201619268	G	C	171.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:18,8:0.31:26
chr2	97827929	rs199850355	A	G	145.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.306;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=2.694;MLEAC=1;MLEAF=0.500;MQ=49.52;MQRankSum=-3.142;QD=8.57;ReadPosRankSum=-0.106;SOR=0.124;set=HC	GT:AD:AF:DP	0/1:12,5:0.29:17
chr2	97827931	rs201368435	T	A	145.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.848;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=2.622;MLEAC=1;MLEAF=0.500;MQ=48.79;MQRankSum=-3.084;QD=9.11;ReadPosRankSum=-0.397;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:11,5:0.31:16
chr2	97827943	.	A	AT	100.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.074;ClippingRankSum=0.000;DP=14;ExcessHet=3.0103;FS=2.836;MLEAC=1;MLEAF=0.500;MQ=48.70;MQRankSum=-2.789;QD=7.20;ReadPosRankSum=-0.212;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:10,4:0.29:14
chr2	97827944	rs368021953	AGAAAC	A	100.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.823;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=2.836;MLEAC=1;MLEAF=0.500;MQ=48.70;MQRankSum=-2.789;QD=7.20;ReadPosRankSum=-0.427;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:10,4:0.29:14
chr2	97827954	.	G	A	79.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.812;ClippingRankSum=-0.000;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=49.09;MQRankSum=-2.515;QD=8.86;ReadPosRankSum=-0.992;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:6,3:0.33:9
chr2	97828929	rs79735975	A	G	2882.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:17,119:0.88:136
chr2	97828982	rs62153884	C	T	4007.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.142;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=12.768;MLEAC=1;MLEAF=0.500;MQ=47.13;MQRankSum=0.195;QD=18.99;ReadPosRankSum=-0.820;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:31,180:0.85:211
chr2	97829003	rs145086333	CAAAAATAA	C	5764.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834;ClippingRankSum=0.000;DB;DP=229;ExcessHet=3.0103;FS=40.789;MLEAC=1;MLEAF=0.500;MQ=46.71;MQRankSum=-5.830;QD=27.72;ReadPosRankSum=2.698;SOR=1.311;set=HC	GT:AD:AF:DP	0/1:65,143:0.69:208
chr2	97829029	rs146874874	G	A	5397.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.455;ClippingRankSum=0.000;DB;DP=215;ExcessHet=3.0103;FS=60.280;MLEAC=1;MLEAF=0.500;MQ=45.91;MQRankSum=-7.592;QD=25.11;ReadPosRankSum=7.349;SOR=1.641;set=HC	GT:AD:AF:DP	0/1:79,136:0.63:215
chr2	97829030	rs140945055	T	G	5397.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.650;ClippingRankSum=0.000;DB;DP=219;ExcessHet=3.0103;FS=64.316;MLEAC=1;MLEAF=0.500;MQ=46.15;MQRankSum=-7.941;QD=24.65;ReadPosRankSum=7.558;SOR=1.639;set=HC	GT:AD:AF:DP	0/1:83,136:0.62:219
chr2	97829119	.	ATG	A	780.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.154;ClippingRankSum=0.000;DP=152;ExcessHet=3.0103;FS=21.695;MLEAC=1;MLEAF=0.500;MQ=51.39;MQRankSum=-8.511;QD=5.24;ReadPosRankSum=0.556;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:112,37:0.25:149
chr2	97829125	.	ACTT	A	736.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=6.823;ClippingRankSum=0.000;DP=139;ExcessHet=3.0103;FS=21.593;MLEAC=1;MLEAF=0.500;MQ=52.30;MQRankSum=-8.369;QD=5.30;ReadPosRankSum=1.421;SOR=2.526;set=HC	GT:AD:AF:DP	0/1:107,32:0.23:139
chr2	97829129	.	T	TAC	617.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=4.002;ClippingRankSum=0.000;DP=138;ExcessHet=3.0103;FS=21.642;MLEAC=1;MLEAF=0.500;MQ=52.37;MQRankSum=-8.269;QD=4.48;ReadPosRankSum=1.822;SOR=2.457;set=HC	GT:AD:AF:DP	0/1:107,31:0.22:138
chr2	97829144	rs62153885	T	G	774.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:92,25:0.21:117
chr2	97829204	rs75770158	C	T	304.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:36,12:0.25:48
chr2	97829221	rs200608168	G	A	272.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:28,9:0.24:37
chr2	97830053	rs112213180	A	G	253.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.419;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=40.163;MLEAC=1;MLEAF=0.500;MQ=51.22;MQRankSum=-3.198;QD=2.27;ReadPosRankSum=0.586;SOR=0.329;set=HC	GT:AD:AF:DP	0/1:88,24:0.21:112
chr2	97830104	rs62153886	G	A	567.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.469;ClippingRankSum=0.000;DB;DP=320;ExcessHet=3.0103;FS=11.200;MLEAC=1;MLEAF=0.500;MQ=55.77;MQRankSum=-11.280;QD=1.83;ReadPosRankSum=3.212;SOR=0.357;set=HC	GT:AD:AF:DP	0/1:251,59:0.19:310
chr2	97833193	rs75122869	G	A	1240.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:18,49:0.73:67
chr2	97833215	rs146634230	T	C	3764.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.815;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=15.627;MLEAC=1;MLEAF=0.500;MQ=47.35;MQRankSum=-8.259;QD=30.12;ReadPosRankSum=0.479;SOR=0.116;set=HC	GT:AD:AF:DP	0/1:32,93:0.74:125
chr2	97833215	.	TCC	CCT	2944	.	AC=1;AF=0.500;AN=2;BRF=0.43;FR=0.5000;HP=2;HapScore=1;MGOF=36;MMLQ=20;MQ=40.81;NF=62;NR=24;PP=2944;QD=20;SC=AGAAGTACTTTCCTGTGTTAG;SbPval=0.45;Source=Platypus;TC=124;TCF=91;TCR=33;TR=86;WE=97833225;WS=97833205;set=Platypus	GT:AD:AF:DP	1/0:38,86:0.69:124
chr2	97833217	rs150423357	C	T	3764.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.311;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=15.533;MLEAC=1;MLEAF=0.500;MQ=47.36;MQRankSum=-8.107;QD=29.41;ReadPosRankSum=0.242;SOR=0.118;set=HC	GT:AD:AF:DP	0/1:32,96:0.75:128
chr2	97833342	rs5008284	G	A	2042.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.770;ClippingRankSum=0.000;DB;DP=250;ExcessHet=3.0103;FS=29.786;MLEAC=1;MLEAF=0.500;MQ=46.90;MQRankSum=-10.297;QD=8.17;ReadPosRankSum=-4.748;SOR=0.888;set=HC	GT:AD:AF:DP	0/1:157,93:0.37:250
chr2	97833361	rs1358633	A	G	922.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.722;ClippingRankSum=0.000;DB;DP=230;ExcessHet=3.0103;FS=10.897;MLEAC=1;MLEAF=0.500;MQ=46.83;MQRankSum=-10.374;QD=4.03;ReadPosRankSum=-5.203;SOR=0.870;set=HC	GT:AD:AF:DP	0/1:177,52:0.23:229
chr2	97833399	rs201829271	C	T	364.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.054;ClippingRankSum=0.000;DB;DP=259;ExcessHet=3.0103;FS=70.659;MLEAC=1;MLEAF=0.500;MQ=46.73;MQRankSum=-9.479;QD=1.41;ReadPosRankSum=-1.727;SOR=6.563;set=HC	GT:AD:AF:DP	0/1:232,27:0.10:259
chr2	97833401	rs5832832	T	TATTAATCA	555.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.326;ClippingRankSum=0.000;DB;DP=259;ExcessHet=3.0103;FS=62.387;MLEAC=1;MLEAF=0.500;MQ=46.77;MQRankSum=-9.029;QD=2.29;ReadPosRankSum=-1.549;SOR=6.303;set=HC	GT:AD:AF:DP	0/1:215,28:0.12:243
chr2	97833466	rs112133169	C	T	2597.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.128;ClippingRankSum=0.000;DB;DP=293;ExcessHet=3.0103;FS=190.033;MLEAC=1;MLEAF=0.500;MQ=44.41;MQRankSum=-11.972;QD=8.87;ReadPosRankSum=2.235;SOR=6.532;set=HC	GT:AD:AF:DP	0/1:184,109:0.37:293
chr2	97833553	rs76811792	C	T	4387.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.308;ClippingRankSum=0.000;DB;DP=279;ExcessHet=3.0103;FS=8.417;MLEAC=1;MLEAF=0.500;MQ=50.02;MQRankSum=-0.422;QD=15.78;ReadPosRankSum=-1.534;SOR=0.367;set=HC	GT:AD:AF:DP	0/1:81,197:0.71:278
chr2	97833567	rs76160111	A	G	3625.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.522;ClippingRankSum=0.000;DB;DP=261;ExcessHet=3.0103;FS=13.625;MLEAC=1;MLEAF=0.500;MQ=51.92;MQRankSum=-0.512;QD=14.00;ReadPosRankSum=-0.984;SOR=0.282;set=HC	GT:AD:AF:DP	0/1:96,163:0.63:259
chr2	97833569	rs78400826	C	T	7081.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.735;ClippingRankSum=0.000;DB;DP=259;ExcessHet=3.0103;FS=9.431;MLEAC=1;MLEAF=0.500;MQ=52.08;MQRankSum=0.159;QD=27.45;ReadPosRankSum=-1.348;SOR=0.335;set=HC	GT:AD:AF:DP	0/1:75,183:0.71:258
chr2	97833583	rs72945197	C	T	4160.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:71,168:0.70:239
chr2	97851069	rs62154801	A	G	5420.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.056;ClippingRankSum=0.000;DB;DP=205;ExcessHet=3.0103;FS=5.355;MLEAC=2;MLEAF=1.000;MQ=48.08;MQRankSum=5.263;QD=26.44;ReadPosRankSum=0.315;SOR=1.827;set=HC	GT:AD:AF:DP	1/1:10,195:0.95:205
chr2	97851335	rs74835904	A	G	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.966;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=28.716;MLEAC=1;MLEAF=0.500;MQ=58.92;MQRankSum=-10.560;QD=0.33;ReadPosRankSum=1.596;SOR=0.372;set=HC	GT:AD:AF:DP	0/1:104,9:0.08:113
chr2	97851345	rs13417266	A	T	87.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.357;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=39.180;MLEAC=1;MLEAF=0.500;MQ=58.69;MQRankSum=-9.563;QD=0.94;ReadPosRankSum=0.978;SOR=0.366;set=HC	GT:AD:AF:DP	0/1:84,9:0.10:93
chr2	97877292	rs10171441	C	A	3933.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr2	97877399	rs10186233	T	C	17848.77	.	AC=2;AF=1.00;AN=2;DB;DP=679;set=Intersection	GT:AD:AF:DP	1/1:0,673:1.00:673
chr2	97877440	rs35711845	T	C	10766.77	.	AC=1;AF=0.500;AN=2;DB;DP=798;set=Intersection	GT:AD:AF:DP	0/1:281,512:0.65:793
chr2	97877478	rs10194525	G	A	4422.77	.	AC=1;AF=0.500;AN=2;DB;DP=766;set=Intersection	GT:AD:AF:DP	0/1:506,254:0.33:760
chr2	98192743	.	A	AAC	346.73	.	AC=1;AF=0.500;AN=2;DP=22;set=Intersection	GT:AD:AF:DP	0/1:12,10:0.45:22
chr2	98192749	rs55777246	T	C	383.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:12,11:0.48:23
chr2	98196849	rs34131105	G	A	1729.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.110;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.05;MQRankSum=-4.369;QD=19.66;ReadPosRankSum=-0.278;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:44,44:0.50:88
chr2	98196859	rs35904593	T	G	1849.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.109;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.49;MQRankSum=-5.455;QD=17.96;ReadPosRankSum=0.631;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:51,52:0.50:103
chr2	98205924	rs74177639	C	G	643.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:65,28:0.30:93
chr2	98206188	rs1868445	C	G	4334.77	.	AC=1;AF=0.500;AN=2;DB;DP=396;MQ=59.88;set=Intersection	GT:AD:AF:DP	0/1:194,196:0.50:390
chr2	98273290	rs11547232	C	T	2008.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:84,106:0.56:190
chr2	98273661	rs2290124	A	G	1666.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:50,75:0.60:125
chr2	98274527	rs1042705	G	C	6787.77	.	AC=1;AF=0.500;AN=2;DB;DP=640;set=Intersection	GT:AD:AF:DP	0/1:320,310:0.49:630
chr2	98275354	rs11692435	G	A	3336.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:153,160:0.51:313
chr2	98276014	rs150112418	CCCTCACCTGCCCTGACCAGAA	C	1289.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.732;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.37;MQRankSum=2.586;QD=16.33;ReadPosRankSum=-3.744;SOR=0.486;set=HC	GT:AD:AF:DP	0/1:44,35:0.44:79
chr2	98351654	rs34532595	TG	T	1328.73	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:67,53:0.44:120
chr2	98353847	rs11686881	C	T	576.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:25,24:0.49:49
chr2	98354139	rs17488834	G	T	12342.77	.	AC=1;AF=0.500;AN=2;DB;DP=1104;set=Intersection	GT:AD:AF:DP	0/1:518,574:0.53:1092
chr2	98354511	rs3192177	G	A	3717.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:129,169:0.57:298
chr2	98355675	rs56067009	CCA	C	2270.73	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:79,62:0.44:141
chr2	98355990	rs11678558	G	A	1056.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:45,45:0.50:90
chr2	98376989	rs3214760	TA	T	1467.73	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr2	98377512	rs2044458	A	T	862.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:23,34:0.60:57
chr2	98382886	rs895438	G	A	1720.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:82,76:0.48:158
chr2	98409046	rs12995673	G	A	2930.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:151,130:0.46:281
chr2	98409565	rs13032265	T	C	466.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:16,19:0.54:35
chr2	98413781	rs2305143	C	T	149.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr2	98418812	rs11340992	CA	C	377.73	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:12,14:0.54:26
chr2	98428809	rs79170240	T	C	835.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:44,37:0.46:81
chr2	98430405	rs143238565	T	TA	516.73	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:33,25:0.43:58
chr2	98435246	rs78683450	T	C	1011.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:81,51:0.39:132
chr2	98449796	rs6721250	C	T	391.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	98460441	rs66477711	TAG	T	335.73	.	AC=1;AF=0.500;AN=2;DB;DP=16;MQ=60.67;set=Intersection	GT:AD:AF:DP	0/1:6,10:0.62:16
chr2	98460742	rs12712162	G	A	233.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:20,12:0.38:32
chr2	98475979	rs6707750	C	T	324.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:10,14:0.58:24
chr2	98525107	rs1317178	T	C	4841.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr2	98544058	rs6707719	T	C	296.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:26,17:0.40:43
chr2	98611833	rs2279825	T	C	1028.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr2	98611994	rs2279824	G	T	2815.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr2	98709684	rs298917	T	C	5493.77	.	AC=1;AF=0.500;AN=2;DB;DP=561;set=Intersection	GT:AD:AF:DP	0/1:281,273:0.49:554
chr2	98795873	rs11419620	T	TG	6955.73	.	AC=1;AF=0.500;AN=2;DB;DP=484;set=Intersection	GT:AD:AF:DP	0/1:235,240:0.51:475
chr2	98797744	rs4851890	C	T	586.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:29,26:0.47:55
chr2	98804314	rs1466156	G	A	325.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:15,15:0.50:30
chr2	98809432	rs74735968	T	C	4143.77	.	AC=1;AF=0.500;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	0/1:203,192:0.49:395
chr2	98811075	rs7579916	A	G	830.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:23,34:0.60:57
chr2	98833449	rs62156666	G	C	329.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.352;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=2.572;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=1.765;QD=9.42;ReadPosRankSum=0.096;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:26,9:0.26:35
chr2	98844575	rs7606220	A	G	644.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:36,28:0.44:64
chr2	98844674	rs7601049	C	G	3501.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:154,167:0.52:321
chr2	98853173	rs11889349	G	A	4574.77	.	AC=1;AF=0.500;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	0/1:221,222:0.50:443
chr2	98862097	rs4851121	A	G	2850.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:119,132:0.53:251
chr2	98872662	rs113487988	C	CT	893.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.039;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=7.015;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=1.841;QD=6.77;ReadPosRankSum=0.285;SOR=1.440;set=HC	GT:AD:AF:DP	0/1:68,64:0.48:132
chr2	98887116	rs4851955	G	C	1754.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:85,74:0.47:159
chr2	98907089	.	G	GT	220.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.369;ClippingRankSum=0.000;DP=214;ExcessHet=3.0103;FS=2.315;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.847;QD=1.13;ReadPosRankSum=1.036;SOR=0.599;set=HC	GT:AD:AF:DP	0/1:157,39:0.20:196
chr2	98928494	rs7587534	G	A	4908.77	.	AC=1;AF=0.500;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	0/1:216,221:0.51:437
chr2	98928929	rs1466944	A	G	883.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:39,35:0.47:74
chr2	98948224	rs13427344	C	A	1684.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:95,83:0.47:178
chr2	98950659	rs10181000	T	C	242.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.702;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=3.834;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.12;ReadPosRankSum=0.762;SOR=0.971;set=HC	GT:AD:AF:DP	0/1:11,13:0.54:24
chr2	98986510	rs6727412	T	C	4078.77	.	AC=1;AF=0.500;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	0/1:239,199:0.45:438
chr2	99149946	rs2278211	G	A	3343.77	.	AC=1;AF=0.500;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	0/1:190,161:0.46:351
chr2	99154229	rs2278208	C	T	828.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:50,40:0.44:90
chr2	99160508	rs3217304	GCA	G	2509.73	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:55,88:0.62:143
chr2	99163261	rs2278207	T	A	1211.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:69,57:0.45:126
chr2	99168953	rs1181562	T	C	128.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr2	99172244	rs2278206	A	G	6009.77	.	AC=1;AF=0.500;AN=2;DB;DP=710;set=Intersection	GT:AD:AF:DP	0/1:395,309:0.44:704
chr2	99181315	rs3214545	AT	A	3348.73	.	AC=1;AF=0.500;AN=2;DB;DP=219;MQ=60.05;set=Intersection	GT:AD:AF:DP	0/1:116,101:0.47:217
chr2	99193496	rs2230388	C	T	2883.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:159,143:0.47:302
chr2	99219071	rs7585747	T	C	435.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.160;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.38;ReadPosRankSum=0.353;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:20,22:0.52:42
chr2	99219206	rs7585939	T	A	956.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:32,46:0.59:78
chr2	99220707	rs4851144	T	C	734.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:28,32:0.53:60
chr2	99224998	rs17034241	C	G	3177.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:128,143:0.53:271
chr2	99226173	rs1062847	T	A	1802.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:71,86:0.55:157
chr2	99234586	rs373790267	A	AT	914.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.122;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=0.656;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.201;QD=4.84;ReadPosRankSum=0.944;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:107,82:0.43:189
chr2	99237792	rs11892744	C	T	1133.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:32,40:0.56:72
chr2	99272802	rs11679648	G	A	2888.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:144,142:0.50:286
chr2	99294712	.	A	AAAAAAATATAT	463.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.080;ClippingRankSum=0.000;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.61;MQRankSum=3.685;QD=9.09;ReadPosRankSum=0.178;SOR=0.351;set=HC	GT:AD:AF:DP	0/1:36,15:0.29:51
chr2	99449174	rs2280256	C	T	1109.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:46,47:0.51:93
chr2	99614595	.	CA	C	192.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.737;ClippingRankSum=0.000;DP=106;ExcessHet=3.0103;FS=0.967;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.93;ReadPosRankSum=0.597;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:70,30:0.30:100
chr2	99695097	rs62156364	A	G	2787.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:125,121:0.49:246
chr2	99726043	rs6733624	A	G	1397.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr2	99804642	rs10865030	T	C	369.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.875;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=4.760;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.07;ReadPosRankSum=0.667;SOR=0.893;set=HC	GT:AD:AF:DP	0/1:47,26:0.36:73
chr2	99859863	rs17760953	G	A	3321.77	.	AC=1;AF=0.500;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	0/1:184,171:0.48:355
chr2	99918077	rs74177686	A	G	355.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:11,14:0.56:25
chr2	99923088	rs13003899	T	C	290.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:13,12:0.48:25
chr2	99936265	.	TA	T	65.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.293;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.22;ReadPosRankSum=1.056;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:40,14:0.26:54
chr2	99938942	rs12464785	A	G	1107.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:56,55:0.50:111
chr2	99939031	rs17022564	A	G	3502.77	.	AC=1;AF=0.500;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	0/1:192,179:0.48:371
chr2	99954636	rs11326784	GT	G	186.73	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:20,15:0.43:35
chr2	99976564	rs3828162	A	G	70.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.257;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.93;ReadPosRankSum=0.499;SOR=0.169;set=HC	GT:AD:AF:DP	0/1:13,5:0.28:18
chr2	99992822	rs7558074	A	C	1491.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr2	99993176	rs10179343	G	A	100.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:10,6:0.38:16
chr2	99995458	rs200706463	AT	A	1733.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.822;ClippingRankSum=0.000;DB;DP=282;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=1.320;QD=6.49;ReadPosRankSum=-1.455;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:121,146:0.55:267
chr2	99995517	rs11896520	C	T	5729.77	.	AC=1;AF=0.500;AN=2;DB;DP=533;set=Intersection	GT:AD:AF:DP	0/1:250,277:0.53:527
chr2	99995804	rs1376443	T	C	14933.77	.	AC=2;AF=1.00;AN=2;DB;DP=572;set=Intersection	GT:AD:AF:DP	1/1:0,570:1.00:570
chr2	99998561	rs2290256	C	T	1228.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr2	99999483	rs148544035	TTATTGTGCTTCACTA	T	707.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.503;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=1.594;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.13;ReadPosRankSum=0.880;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:18,19:0.51:37
chr2	99999517	rs146864457	T	TTG	437.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.997;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=2.817;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.90;ReadPosRankSum=1.820;SOR=0.153;set=HC	GT:AD:AF:DP	0/1:7,15:0.68:22
chr2	100006620	rs10187843	G	T	4580.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr2	100006890	rs35228031	G	GT	1012.73	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:92,88:0.49:180
chr2	100006904	rs58344028	T	TA	1046.73	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:116,82:0.41:198
chr2	100019496	rs2305354	A	G	6895.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;MQ=60.04;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr2	100019612	rs3087397	TG	T	769.73	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:38,27:0.42:65
chr2	100021184	rs2290261	A	G	2430.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:122,116:0.49:238
chr2	100022270	rs1053544	G	A	406.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:7,16:0.70:23
chr2	100022617	rs13394927	G	A	1318.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:52,55:0.51:107
chr2	100022772	rs717454	T	C	3051.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:160,149:0.48:309
chr2	100050740	rs13409359	A	C	2957.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:139,135:0.49:274
chr2	100055033	rs10175852	C	A	771.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:37,36:0.49:73
chr2	100055158	rs3087399	T	C	2644.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:123,119:0.49:242
chr2	100055506	rs3087386	A	G	5906.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr2	100058870	rs3087403	C	T	2929.77	.	AC=1;AF=0.500;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	0/1:185,145:0.44:330
chr2	100068069	rs4851206	T	C	563.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:16,24:0.60:40
chr2	100081323	rs28369943	C	T	9147.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	1/1:0,340:1.00:340
chr2	100081561	rs28369942	A	AAAGTC	2660.73	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr2	100210074	rs1047281	G	C	1867.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:97,95:0.49:192
chr2	100210642	rs1047265	T	C	7453.77	.	AC=1;AF=0.500;AN=2;DB;DP=744;set=Intersection	GT:AD:AF:DP	0/1:392,344:0.47:736
chr2	100265936	rs17782474	A	G	354.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:9,16:0.64:25
chr2	100343557	rs4851223	C	T	11735.77	.	AC=2;AF=1.00;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	1/1:0,446:1.00:446
chr2	100454072	rs5832886	C	CT	16447.73	.	AC=2;AF=1.00;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	1/1:0,413:1.00:413
chr2	100721050	rs13421952	A	G	78.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.637;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.26;ReadPosRankSum=1.180;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:2,5:0.71:7
chr2	100910578	rs4850925	C	T	1227.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:58,56:0.49:114
chr2	100915330	rs116702638	G	T	2522.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:127,121:0.49:248
chr2	100915629	rs4851286	T	C	11176.77	.	AC=2;AF=1.00;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	1/1:1,406:1.00:407
chr2	100915772	rs4851287	A	G	8589.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr2	100916051	rs2033749	T	C	873.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	100916306	rs2033748	A	G	5889.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.91;SOR=1.091;set=HC	GT:AD:AF:DP	1/1:0,164:1.00:164
chr2	100916306	.	AAAGTGTAGA	GAAGTGTAGA,GAAGTGTAGG	885	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.43;FR=0.5000,0.5000;HP=2;HapScore=2;MGOF=2;MMLQ=22;MQ=60.0;NF=42,20;NR=69,33;PP=821,885;QD=7.70965056349;SC=TATCCTCTTCAAAGTGTAGAC;SbPval=0.54;Source=Platypus;TC=111;TCF=42;TCR=69;TR=111,53;WE=100916323;WS=100916296;set=Platypus	GT:AF:DP	0/1:1.00:111
chr2	100916315	rs11123823	A	G	1784.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.711;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=2.014;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.37;ReadPosRankSum=-1.009;SOR=0.540;set=HC	GT:AD:AF:DP	0/1:74,83:0.53:157
chr2	100917109	rs13006224	C	T	6129.77	.	AC=1;AF=0.500;AN=2;DB;DP=577;set=Intersection	GT:AD:AF:DP	0/1:281,293:0.51:574
chr2	100925803	rs10195793	A	G	640.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:14,26:0.65:40
chr2	100938205	rs184118488	G	A	273.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:22,16:0.42:38
chr2	100938226	rs74177694	G	C	438.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:9,18:0.67:27
chr2	100938328	rs74177695	T	C	30.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.601;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=2.808;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.42;ReadPosRankSum=-0.000;SOR=0.959;set=HC	GT:AD:AF:DP	0/1:6,3:0.33:9
chr2	100938481	rs74177696	C	G	138.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:12,8:0.40:20
chr2	100986964	rs1437971	A	C	3974.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr2	101009600	rs1530030	G	A	1319.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:54,56:0.51:110
chr2	101010082	rs3748930	G	C	5378.77	.	AC=1;AF=0.500;AN=2;DB;DP=535;set=Intersection	GT:AD:AF:DP	0/1:266,261:0.50:527
chr2	101011877	rs2241810	T	C	2166.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:93,100:0.52:193
chr2	101014247	rs4149517	C	A	765.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:44,31:0.41:75
chr2	101014363	rs2241809	C	T	3769.77	.	AC=1;AF=0.500;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	0/1:230,185:0.45:415
chr2	101022886	rs4149512	C	T	1505.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:59,68:0.54:127
chr2	101031561	rs3828193	G	T	2285.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;MQ=60.05;set=Intersection	GT:AD:AF:DP	0/1:101,106:0.51:207
chr2	101031588	.	TA	T	63.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.348;ClippingRankSum=0.000;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=2.044;QD=0.65;ReadPosRankSum=-0.315;SOR=0.791;set=HC	GT:AD:AF:DP	0/1:76,22:0.22:98
chr2	101126124	rs1829479	T	A	3378.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:118,153:0.56:271
chr2	101437561	rs6542989	G	A	5401.77	.	AC=1;AF=0.500;AN=2;DB;DP=612;set=Intersection	GT:AD:AF:DP	0/1:338,269:0.44:607
chr2	101437601	rs6542990	C	G	6106.77	.	AC=1;AF=0.500;AN=2;DB;DP=661;set=Intersection	GT:AD:AF:DP	0/1:359,298:0.45:657
chr2	101437762	rs13390078	A	G	1497.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:65,63:0.49:128
chr2	101520972	rs5832941	A	AT	385.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	101520985	rs10168430	A	T	185.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chr2	101521173	rs3042779	AT	A	480.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.247;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=2.053;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=1.284;QD=6.16;ReadPosRankSum=-1.034;SOR=0.456;set=HC	GT:AD:AF:DP	0/1:34,44:0.56:78
chr2	101564628	rs10207725	A	G	2196.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:89,96:0.52:185
chr2	101566070	rs3739005	C	T	588.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:29,25:0.46:54
chr2	101580575	rs41280595	G	A	2692.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:162,136:0.46:298
chr2	101581246	rs7581886	C	T	2018.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.849;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=1.153;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=-0.971;QD=9.90;ReadPosRankSum=-0.039;SOR=0.597;set=HC	GT:AD:AF:DP	0/1:104,100:0.49:204
chr2	101581294	.	C	CT	373.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.562;ClippingRankSum=0.000;DP=325;ExcessHet=3.0103;FS=1.144;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=0.000;QD=1.27;ReadPosRankSum=0.308;SOR=0.605;set=HC	GT:AD:AF:DP	0/1:234,61:0.21:295
chr2	101581976	rs4851392	A	G	251.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:16,11:0.41:27
chr2	101591304	rs2305160	A	G	4054.77	.	AC=1;AF=0.500;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	0/1:219,205:0.48:424
chr2	101594191	rs11541353	C	T	7586.77	.	AC=1;AF=0.500;AN=2;DB;DP=751;set=Intersection	GT:AD:AF:DP	0/1:371,376:0.50:747
chr2	101598677	rs2278727	C	T	4976.77	.	AC=1;AF=0.500;AN=2;DB;DP=538;set=Intersection	GT:AD:AF:DP	0/1:251,262:0.51:513
chr2	101619283	rs2278724	C	G	6413.77	.	AC=1;AF=0.500;AN=2;DB;DP=568;set=Intersection	GT:AD:AF:DP	0/1:272,296:0.52:568
chr2	101619321	rs2278723	T	C	6815.77	.	AC=1;AF=0.500;AN=2;DB;DP=635;set=Intersection	GT:AD:AF:DP	0/1:311,323:0.51:634
chr2	101619377	rs72821045	C	T	4731.77	.	AC=1;AF=0.500;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	0/1:201,214:0.52:415
chr2	101620856	rs34386800	TA	T	290.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.729;ClippingRankSum=0.000;DB;DP=348;ExcessHet=3.0103;FS=1.925;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.02;ReadPosRankSum=-1.481;SOR=0.545;set=HC	GT:AD:AF:DP	0/1:227,59:0.21:286
chr2	101624471	rs746924	T	C	4697.77	.	AC=1;AF=0.500;AN=2;DB;DP=503;set=Intersection	GT:AD:AF:DP	0/1:278,216:0.44:494
chr2	101627925	rs1062062	C	T	2963.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:94,127:0.57:221
chr2	101635369	rs56291532	G	A	3949.77	.	AC=1;AF=0.500;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	0/1:247,199:0.45:446
chr2	101638828	rs34685616	C	T	4132.77	.	AC=1;AF=0.500;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	0/1:207,201:0.49:408
chr2	101638888	rs3739014	A	G	3763.77	.	AC=1;AF=0.500;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	0/1:197,185:0.48:382
chr2	101656726	rs2289953	T	C	3160.77	.	AC=1;AF=0.500;AN=2;DB;DP=508;set=Intersection	GT:AD:AF:DP	0/1:327,179:0.35:506
chr2	101869588	rs2272320	G	T	2649.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.147;ClippingRankSum=0.000;DB;DP=280;ExcessHet=3.0103;FS=2.045;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.57;ReadPosRankSum=-0.592;SOR=0.577;set=HC	GT:AD:AF:DP	0/1:145,132:0.48:277
chr2	101874442	rs6757365	C	T	1416.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:123,73:0.37:196
chr2	101881549	rs3768995	A	T	2247.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.965;ClippingRankSum=0.000;DB;DP=260;ExcessHet=3.0103;FS=0.996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.03;ReadPosRankSum=2.189;SOR=0.625;set=HC	GT:AD:AF:DP	0/1:122,127:0.51:249
chr2	101883046	rs1660694	A	G	2463.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:90,99:0.52:189
chr2	101889306	rs750783	A	G	1816.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:57,77:0.57:134
chr2	101898412	rs13151	G	C	4593.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr2	101911385	rs3828194	A	G	4741.77	.	AC=1;AF=0.500;AN=2;DB;DP=490;set=Intersection	GT:AD:AF:DP	0/1:247,239:0.49:486
chr2	101967346	rs6543032	C	T	10220.77	.	AC=2;AF=1.00;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	1/1:0,359:1.00:359
chr2	102000210	rs11694978	G	A	2135.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:2,80:0.98:82
chr2	102003962	rs116287156	T	C	1045.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	102018878	rs11123876	G	A	3925.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr2	102027050	rs35603034	CT	C	430.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.248;ClippingRankSum=0.000;DB;DP=396;ExcessHet=3.0103;FS=2.297;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=2.532;QD=1.15;ReadPosRankSum=-0.233;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:288,86:0.23:374
chr2	102029273	rs11689348	T	C	1523.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr2	102029548	rs1554070	G	A	6309.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr2	102031176	rs4851434	A	G	3107.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr2	102031489	rs4851435	C	G	4066.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr2	102035192	rs6709913	C	T	1159.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr2	102038849	rs4851436	T	A	18000.77	.	AC=2;AF=1.00;AN=2;DB;DP=674;set=Intersection	GT:AD:AF:DP	1/1:0,664:1.00:664
chr2	102066878	rs4851448	A	T	1179.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr2	102067083	rs7585228	T	C	6389.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr2	102068715	rs11123884	C	G	648.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	102068872	rs4851449	T	A	6648.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr2	102069002	rs4851450	T	C	3065.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr2	102083183	rs4851455	T	C	684.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.103;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=1.032;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.41;ReadPosRankSum=1.198;SOR=0.484;set=HC	GT:AD:AF:DP	0/1:27,33:0.55:60
chr2	102083393	rs11680478	T	C	1732.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:84,86:0.51:170
chr2	102314437	rs13430711	T	C	1084.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.406;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=1.861;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.12;ReadPosRankSum=-0.992;SOR=0.913;set=HC	GT:AD:AF:DP	0/1:69,50:0.42:119
chr2	102448164	rs149086802	CT	C	1054.73	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:66,56:0.46:122
chr2	102504563	rs11895969	T	A	190.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:3,8:0.73:11
chr2	102505434	rs79538056	A	G	2725.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:122,129:0.51:251
chr2	102785158	rs55639750	G	GT	60.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.414;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=6.988;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.000;QD=0.49;ReadPosRankSum=-0.366;SOR=1.631;set=HC	GT:AD:AF:DP	0/1:102,22:0.18:124
chr2	102788409	rs2041747	G	A	4189.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr2	102804538	rs144678772	A	AACC	2915.73	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:69,77:0.53:146
chr2	102817954	rs2302623	A	T	820.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:29,36:0.55:65
chr2	102828378	rs138145179	A	ATT	266.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.197;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.68;ReadPosRankSum=0.013;SOR=0.437;set=HC	GT:AD:AF:DP	0/1:31,16:0.34:47
chr2	102828768	rs1922290	G	C	326.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:9,13:0.59:22
chr2	102957628	rs201528268	C	CT	138.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.548;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=1.309;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.23;ReadPosRankSum=1.319;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:29,14:0.33:43
chr2	102957716	rs1420101	C	T	1577.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:75,78:0.51:153
chr2	102967928	rs4988955	A	G	1507.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:49,58:0.54:107
chr2	102968007	rs4988956	G	A	5521.77	.	AC=1;AF=0.500;AN=2;DB;DP=507;set=Intersection	GT:AD:AF:DP	0/1:243,262:0.52:505
chr2	102968075	rs4988957	T	C	8023.77	.	AC=1;AF=0.500;AN=2;DB;DP=762;set=Intersection	GT:AD:AF:DP	0/1:376,381:0.50:757
chr2	102968211	rs10192036	CA	AG	8384.77	.	AC=1;AF=0.500;AN=2;DB;DP=396;JOINED;set=Intersection	GT:AD:AF:DP	0/1:177,214:0.55:391
chr2	102968285	rs4988958	T	C	2196.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:90,89:0.50:179
chr2	102968356	rs10192157	C	T	1553.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.564;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.86;ReadPosRankSum=-0.024;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:44,43:0.49:87
chr2	102968362	rs10206753	T	C	1556.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.381;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.918;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.76;ReadPosRankSum=0.370;SOR=0.559;set=HC	GT:AD:AF:DP	0/1:42,41:0.49:83
chr2	102979028	rs2287037	C	T	2237.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:99,104:0.51:203
chr2	102979238	.	G	GT	199.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.482;ClippingRankSum=0.000;DP=123;ExcessHet=3.0103;FS=1.066;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.35;ReadPosRankSum=0.585;SOR=0.463;set=HC	GT:AD:AF:DP	0/1:61,24:0.28:85
chr2	102984279	rs1420098	T	C	2353.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:93,100:0.52:193
chr2	102984624	rs1362348	C	G	1114.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:33,43:0.57:76
chr2	102998279	rs3213732	A	G	208.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:12,10:0.45:22
chr2	103001402	rs1035130	C	T	3008.77	.	AC=1;AF=0.500;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	0/1:206,152:0.42:358
chr2	103003265	rs2241116	C	A	1263.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:52,56:0.52:108
chr2	103006387	rs4851570	A	G	989.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:36,43:0.54:79
chr2	103006448	rs6749014	C	T	1510.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:90,72:0.44:162
chr2	103010912	rs1420096	C	T	3339.77	.	AC=1;AF=0.500;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	0/1:198,164:0.45:362
chr2	103013388	rs11465656	TG	T	2867.73	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:116,104:0.47:220
chr2	103039584	rs3817465	A	T	3689.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr2	103040247	rs11377261	T	TG	5335.73	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr2	103040249	rs2272129	C	T	5344.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr2	103040945	rs887972	G	A	966.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:45,42:0.48:87
chr2	103048738	rs62154972	G	A	712.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:28,30:0.52:58
chr2	103057668	rs11465700	G	A	2196.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:132,112:0.46:244
chr2	103059613	rs1558651	A	G	8022.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr2	103090127	rs17027255	C	T	492.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:29,20:0.41:49
chr2	103095404	rs11692304	G	A	6118.77	.	AC=1;AF=0.500;AN=2;DB;DP=618;set=Intersection	GT:AD:AF:DP	0/1:311,302:0.49:613
chr2	103120179	rs7575867	C	T	4425.77	.	AC=1;AF=0.500;AN=2;DB;DP=444;set=Intersection	GT:AD:AF:DP	0/1:227,214:0.49:441
chr2	103120232	rs2075188	G	A	7218.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr2	103120311	rs2075187	G	A	2011.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr2	103125182	rs6724322	C	T	794.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr2	103125457	rs6739301	A	G	19789.77	.	AC=2;AF=1.00;AN=2;DB;DP=456;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.59;SOR=0.766;set=HC	GT:AD:AF:DP	1/1:0,454:1.00:454
chr2	103125466	rs6742381	T	C	19413.77	.	AC=2;AF=1.00;AN=2;DB;DP=432;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.15;SOR=0.821;set=HC	GT:AD:AF:DP	1/1:0,430:1.00:430
chr2	103128866	rs4851609	T	C	2230.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr2	103136309	rs1403550	T	C	8015.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr2	103136446	rs1403551	T	G	2808.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr2	103141447	rs2015478	A	G	2190.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:113,107:0.49:220
chr2	103141651	rs1024798	G	C	2036.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr2	103142994	rs7576324	G	A	171.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr2	103149100	rs1014286	G	A	997.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:81,49:0.38:130
chr2	103149162	rs2008159	A	G	668.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:55,33:0.38:88
chr2	103149182	rs2008157	A	G	581.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:38,27:0.42:65
chr2	103149210	rs74560841	G	A	508.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:19,22:0.54:41
chr2	103281540	rs35151143	G	GT	4598.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.183;ClippingRankSum=0.000;DB;DP=304;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.48;ReadPosRankSum=0.927;SOR=0.761;set=HC	GT:AD:AF:DP	1/1:40,257:0.87:297
chr2	103311674	rs11685926	G	A	1008.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:63,49:0.44:112
chr2	103322496	.	C	CAAT	86.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.650;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;FS=2.028;MLEAC=1;MLEAF=0.500;MQ=59.52;MQRankSum=0.668;QD=2.63;ReadPosRankSum=-0.226;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:28,5:0.15:33
chr2	103322497	.	G	GAGAACACTTGGACACAGGAAGGGGAACATCACAC	86.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.493;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=2.028;MLEAC=1;MLEAF=0.500;MQ=59.49;MQRankSum=0.668;QD=2.63;ReadPosRankSum=-1.335;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:28,5:0.15:33
chr2	103335754	rs72828057	T	C	2235.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:89,89:0.50:178
chr2	103343234	rs3796061	G	C	660.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:22,30:0.58:52
chr2	103375056	rs2732838	T	G	7422.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr2	103378581	.	CTT	C,CT	642.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.433;ClippingRankSum=0.000;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.35;MQRankSum=0.723;QD=11.48;ReadPosRankSum=-0.888;SOR=1.270;set=HC	GT:AD:AF:DP	1/2:10,23,23:0.41,0.41:56
chr2	103378857	rs2540298	C	G	7165.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr2	103380998	rs2540296	C	G	790.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:25,32:0.56:57
chr2	103414593	rs140870577	CACTA	C	1259.73	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:14,32:0.70:46
chr2	103431404	rs887987	T	C	5118.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr2	105472055	rs186512421	T	C	293.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.675;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=1.393;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.18;ReadPosRankSum=-0.298;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:17,15:0.47:32
chr2	105709023	rs6543282	T	C	2389.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:116,119:0.51:235
chr2	105885961	rs2241797	T	C	3986.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr2	105889349	rs11676273	G	A	1933.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:118,94:0.44:212
chr2	105897003	rs2241799	G	A	2832.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:149,140:0.48:289
chr2	105897261	rs2679833	C	T	1727.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr2	105924017	rs67600221	C	T	295.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:25,14:0.36:39
chr2	105924510	rs2241801	A	G	3696.77	.	AC=1;AF=0.500;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	0/1:205,174:0.46:379
chr2	105953909	rs2033727	G	C	1541.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:57,68:0.54:125
chr2	105953938	rs3217439	G	GC	7342.73	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr2	105961703	rs2679842	G	A	1266.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.077;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=5.070;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.06;ReadPosRankSum=-0.549;SOR=0.352;set=HC	GT:AD:AF:DP	0/1:45,60:0.57:105
chr2	105977761	rs11124029	G	A	1066.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:90,57:0.39:147
chr2	105979730	rs2278502	C	A	21022.77	.	AC=2;AF=1.00;AN=2;DB;DP=792;set=Intersection	GT:AD:AF:DP	1/1:0,773:1.00:773
chr2	105994564	rs144051497	C	CATCAA	6027.73	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:142,155:0.52:297
chr2	106013147	rs34179780	C	T	24103.77	.	AC=2;AF=1.00;AN=2;DB;DP=916;set=Intersection	GT:AD:AF:DP	1/1:2,911:1.00:913
chr2	106471393	rs6543345	T	C	3574.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.37;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:0,126:1.00:126
chr2	106471825	rs3832068	C	CA	737.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.613;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=1.802;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.66;ReadPosRankSum=0.261;SOR=1.552;set=HC	GT:AD:AF:DP	0/1:9,45:0.83:54
chr2	106690542	rs35317173	G	A	1488.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr2	106710668	rs11268588	C	CGCAGGAAGGAAGTGCCACCTT	2575.73	.	AC=2;AF=1.00;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.00;SOR=5.211;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr2	106715342	rs3820891	G	A	6384.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr2	106717274	rs3739136	A	G	1440.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr2	106717656	rs10177888	G	A	2326.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr2	106742139	rs4851925	C	T	7536.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr2	106742177	rs3739137	T	A	7596.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr2	106780015	rs3910716	C	T	1093.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	106780055	rs10631203	C	CTG	2932.73	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr2	106782398	rs4851115	C	G	2924.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr2	106810727	rs7604916	A	G	9238.77	.	AC=2;AF=1.00;AN=2;DB;DP=356;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.25;SOR=0.838;set=HC	GT:AD:AF:DP	1/1:0,352:1.00:352
chr2	106810767	rs78870678	G	T	1813.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.266;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=14.880;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.01;ReadPosRankSum=1.348;SOR=1.280;set=HC	GT:AD:AF:DP	0/1:69,82:0.54:151
chr2	106992952	rs4641931	A	G	9727.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr2	106992963	rs11464214	A	AG	10237.73	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr2	107007576	rs60043380	A	T	3963.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr2	107107567	rs2228021	G	C	12010.77	.	AC=2;AF=1.00;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	1/1:0,451:1.00:451
chr2	107107694	rs6543414	A	G	4419.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr2	107107765	rs6543415	C	A	2587.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr2	107118896	rs4340514	T	C	3303.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr2	107119136	rs4365459	G	C	1818.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:4,66:0.94:70
chr2	107120812	rs62154001	T	A	1813.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:83,87:0.51:170
chr2	107121040	rs146000492	T	TA	6611.73	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:9,285:0.97:294
chr2	107423188	rs1470591	G	A	7534.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr2	107423395	rs1470590	T	G	10589.77	.	AC=2;AF=1.00;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	1/1:0,384:1.00:384
chr2	107429801	rs6739022	C	T	645.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	107446396	rs877693	T	C	3998.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr2	107446430	rs935565	T	C	6707.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr2	107460474	rs12473361	T	G	2612.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr2	108863650	rs9646947	A	C	4408.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.672;ClippingRankSum=0.000;DB;DP=482;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.30;ReadPosRankSum=0.759;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:256,218:0.46:474
chr2	108863767	rs9308806	A	C	3554.77	.	AC=1;AF=0.500;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	0/1:229,171:0.43:400
chr2	108868736	rs13030422	G	A	515.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:12,20:0.62:32
chr2	108875464	.	AAAACTTGGTCAGGTGATGTTAT	A	9542.73	.	AC=1;AF=0.500;AN=2;DP=738;set=Intersection	GT:AD:AF:DP	0/1:428,263:0.38:691
chr2	108876948	rs4141931	C	T	501.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:26,20:0.43:46
chr2	108877062	rs4141932	T	A	2932.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:152,147:0.49:299
chr2	108910870	.	CCT	C	1417.73	.	AC=1;AF=0.500;AN=2;DP=82;set=Intersection	GT:AD:AF:DP	0/1:36,38:0.51:74
chr2	108915136	rs7590599	T	C	1936.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.849;ClippingRankSum=0.000;DB;DP=211;ExcessHet=3.0103;FS=1.075;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.065;QD=9.45;ReadPosRankSum=1.805;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:108,97:0.47:205
chr2	108915263	rs4149422	C	T	1520.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:68,78:0.53:146
chr2	109000064	rs77321543	C	T	720.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:54,36:0.40:90
chr2	109006665	rs13021399	T	A	3286.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:136,156:0.53:292
chr2	109065858	rs2460947	T	C	1485.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:74,70:0.49:144
chr2	109065919	rs3820957	T	C	1733.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:65,71:0.52:136
chr2	109066266	rs78477242	G	T	250.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:16,11:0.41:27
chr2	109067337	rs12468089	C	T	626.73	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:27,25:0.48:52
chr2	109067359	rs13397470	GT	AA	1722.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;JOINED;set=Intersection	GT:AD:AF:DP	0/1:45,45:0.50:90
chr2	109069008	rs2683797	T	C	3985.77	.	AC=1;AF=0.500;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	0/1:176,189:0.52:365
chr2	109085373	rs10179602	A	G	3650.77	.	AC=1;AF=0.500;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:136,171:0.56:307
chr2	109089404	rs2243888	C	G	734.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:21,35:0.62:56
chr2	109092121	rs3213886	G	A	725.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.006;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.80;ReadPosRankSum=-0.714;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:55,38:0.41:93
chr2	109098994	rs3213887	T	C	126.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:5,6:0.55:11
chr2	109099477	rs2577613	A	G	1309.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.482;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=1.239;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.08;ReadPosRankSum=0.323;SOR=0.589;set=HC	GT:AD:AF:DP	0/1:94,68:0.42:162
chr2	109099572	rs2718698	C	G	2829.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr2	109103108	rs3754925	C	T	2522.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:100,115:0.53:215
chr2	109106381	rs12104502	A	G	3927.77	.	AC=1;AF=0.500;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	0/1:226,190:0.46:416
chr2	109123988	rs201688853	C	CT	412.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.149;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=6.941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.94;ReadPosRankSum=-0.383;SOR=1.839;set=HC	GT:AD:AF:DP	0/1:25,27:0.52:52
chr2	109150876	.	C	T	60.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.569;ClippingRankSum=-0.000;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.08;ReadPosRankSum=-0.385;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:3,7:0.70:10
chr2	109277239	rs12472770	C	T	2198.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:106,106:0.50:212
chr2	109292280	rs7584953	T	C	10129.77	.	AC=2;AF=1.00;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	1/1:0,372:1.00:372
chr2	109379977	rs61748148	A	T	11491.77	.	AC=1;AF=0.500;AN=2;DB;DP=1098;set=Intersection	GT:AD:AF:DP	0/1:549,532:0.49:1081
chr2	109389463	rs826580	G	A	6487.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr2	109393522	rs58272304	TG	T	3000.73	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr2	109403177	.	C	CG	542.73	.	AC=1;AF=0.500;AN=2;DP=43;set=Intersection	GT:AD:AF:DP	0/1:19,24:0.56:43
chr2	109411248	rs111234702	GAATAT	G	2226.73	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr2	109429146	rs975597	T	A	3331.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:1,123:0.99:124
chr2	109490104	rs6737810	A	G	2225.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr2	109513321	rs7607563	C	A	3567.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr2	109513654	rs12623957	G	A	15535.77	.	AC=2;AF=1.00;AN=2;DB;DP=581;set=Intersection	GT:AD:AF:DP	1/1:0,567:1.00:567
chr2	109513786	rs3789738	A	T	5197.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.80;SOR=1.893;set=HC	GT:AD:AF:DP	1/1:0,187:1.00:187
chr2	109522720	rs260639	G	A	2920.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.47;SOR=1.452;set=HC	GT:AD:AF:DP	1/1:0,130:1.00:130
chr2	109526969	rs260632	G	A	5210.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr2	109527087	rs260631	G	A	2508.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:2,91:0.98:93
chr2	109527373	rs260630	A	G	5665.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr2	109539653	rs260643	A	G	1245.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr2	109546828	.	A	C	1139.77	.	AC=1;AF=0.500;AN=2;DP=86;set=Intersection	GT:AD:AF:DP	0/1:41,45:0.52:86
chr2	109745782	rs200435574	TGGCCGGTCCCCGCCACGCA	T	2588.73	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:4,102:0.96:106
chr2	109745929	rs1367274	C	G	1208.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:60,59:0.50:119
chr2	109929958	rs6748434	A	G	3666.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr2	109964431	rs6725756	C	T	1634.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:81,79:0.49:160
chr2	109988215	rs11680644	C	G	1517.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr2	110053248	rs7369523	C	T	1181.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:53,49:0.48:102
chr2	110259305	rs72627485	C	T	1132.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:24,44:0.65:68
chr2	110322117	rs201983944	C	CA	2119.73	.	AC=1;AF=0.500;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	0/1:187,140:0.43:327
chr2	110372192	rs6594048	A	G	4465.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr2	110855123	rs2004273	G	T	13999.77	.	AC=2;AF=1.00;AN=2;DB;DP=522;MQ=59.96;set=Intersection	GT:AD:AF:DP	1/1:0,508:1.00:508
chr2	110873470	rs11375171	G	GA	450.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.930;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=4.405;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.151;QD=5.85;ReadPosRankSum=0.904;SOR=0.790;set=HC	GT:AD:AF:DP	0/1:43,34:0.44:77
chr2	110882699	rs2048243	A	G	3176.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:175,153:0.47:328
chr2	110886686	rs3838315	A	AGACCAGAT	4831.73	.	AC=1;AF=0.500;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:188,126:0.40:314
chr2	110889108	rs11240790	C	T	578.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:29,25:0.46:54
chr2	110905664	rs1509417	G	A	322.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:26,17:0.40:43
chr2	110919041	rs3817140	A	G	369.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:11,14:0.56:25
chr2	110919321	rs2271244	C	T	1324.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:46,61:0.57:107
chr2	110922064	rs71793890	C	CA	510.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.726;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=2.266;QD=2.89;ReadPosRankSum=1.348;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:119,58:0.33:177
chr2	110922703	rs11675767	C	T	9010.77	.	AC=1;AF=0.500;AN=2;DB;DP=1008;set=Intersection	GT:AD:AF:DP	0/1:543,453:0.45:996
chr2	110925982	rs11453404	G	GA	66.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.535;ClippingRankSum=0.000;DB;DP=289;ExcessHet=3.0103;FS=0.699;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=0.000;QD=0.26;ReadPosRankSum=-0.159;SOR=0.798;set=HC	GT:AD:AF:DP	0/1:219,40:0.15:259
chr2	110959898	rs11240794	C	G	1749.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:100,84:0.46:184
chr2	111058854	rs190352639	G	A	825.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.683;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=48.24;MQRankSum=-1.556;QD=12.70;ReadPosRankSum=1.867;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:22,43:0.66:65
chr2	111397237	rs112515450	CT	C	350.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.864;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.445;QD=2.62;ReadPosRankSum=0.934;SOR=0.803;set=HC	GT:AD:AF:DP	0/1:89,45:0.34:134
chr2	111398472	rs13398617	T	C	708.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:52,32:0.38:84
chr2	111406724	.	T	TCACA	222.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.433;ClippingRankSum=0.000;DP=48;ExcessHet=3.0103;FS=1.391;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.71;ReadPosRankSum=0.291;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:26,13:0.33:39
chr2	111406968	.	G	GA	184.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.349;ClippingRankSum=0.000;DP=80;ExcessHet=3.0103;FS=2.348;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=0.000;QD=2.68;ReadPosRankSum=-0.790;SOR=1.051;set=HC	GT:AD:AF:DP	0/1:49,20:0.29:69
chr2	111419426	rs7609252	A	G	3937.77	.	AC=1;AF=0.500;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	0/1:175,185:0.51:360
chr2	111526090	.	TGA	T	80.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.091;ClippingRankSum=0.000;DP=139;ExcessHet=3.0103;FS=3.404;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.01;ReadPosRankSum=0.464;SOR=0.245;set=HC	GT:AD:AF:DP	0/1:68,12:0.15:80
chr2	111644475	rs10188079	C	T	1621.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:77,70:0.48:147
chr2	111644491	rs66815319	TA	T	1720.73	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:54,56:0.51:110
chr2	111721142	rs139200296	ATGTGTGTGTGTGTGTGTGTG	A	5652.73	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:127,163:0.56:290
chr2	111753449	rs3761707	G	C	3742.77	.	AC=1;AF=0.500;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	0/1:217,182:0.46:399
chr2	111851212	rs13025330	C	T	1688.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:81,76:0.48:157
chr2	111886180	rs200489083	CT	C	448.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.240;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.971;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.001;QD=5.98;ReadPosRankSum=0.815;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:30,45:0.60:75
chr2	111899881	rs3761706	G	A	2860.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:127,136:0.52:263
chr2	111907691	rs724710	T	C	2932.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:142,139:0.49:281
chr2	112528623	.	G	A	1118.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.141;ClippingRankSum=0.000;DP=111;ExcessHet=3.0103;FS=2.530;MLEAC=1;MLEAF=0.500;MQ=50.01;MQRankSum=0.378;QD=10.08;ReadPosRankSum=1.720;SOR=0.461;set=HC	GT:AD:AF:DP	0/1:55,56:0.50:111
chr2	112536264	rs76115652	G	T	1129.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.95;QD=31.38;SOR=3.797;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr2	112551673	rs200630962	G	A	351.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:83,21:0.20:104
chr2	112552491	.	G	GA	643.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.560;ClippingRankSum=0.000;DP=60;ExcessHet=3.0103;FS=0.997;MLEAC=1;MLEAF=0.500;MQ=48.23;MQRankSum=0.820;QD=10.73;ReadPosRankSum=-0.127;SOR=0.518;set=HC	GT:AD:AF:DP	0/1:34,26:0.43:60
chr2	112582523	rs74602614	G	A	2687.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:151,131:0.46:282
chr2	112590989	rs3761697	A	T	1288.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:44,53:0.55:97
chr2	112605302	rs4848197	C	T	382.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:125,27:0.18:152
chr2	112605465	rs4848800	T	C	3300.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr2	112615933	rs72936244	T	C	484.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.476;ClippingRankSum=0.000;DB;DP=515;ExcessHet=3.0103;FS=3.628;MLEAC=1;MLEAF=0.500;MQ=57.82;MQRankSum=-12.231;QD=0.96;ReadPosRankSum=1.515;SOR=0.548;set=HC	GT:AD:AF:DP	0/1:425,81:0.16:506
chr2	112625575	rs6742515	T	C	2360.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:93,113:0.55:206
chr2	112630412	rs141064868	A	C	473.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:26,21:0.45:47
chr2	112641111	.	CA	C	370.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.011;ClippingRankSum=0.000;DP=557;ExcessHet=3.0103;FS=0.438;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=3.726;QD=0.71;ReadPosRankSum=1.611;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:404,121:0.23:525
chr2	112641256	rs2037198	G	A	6710.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.11;QD=37.08;SOR=2.872;set=HC	GT:AD:AF:DP	1/1:0,181:1.00:181
chr2	112641256	.	GA	AA,AG	1819	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.35;FR=0.5000,0.5000;HP=3;HapScore=2;MGOF=10;MMLQ=28;MQ=60.1;NF=27,13;NR=128,55;PP=1819,1407;QD=11.9598142745;SC=AGGCCAGTCTGAAAGCTGAGG;SbPval=0.54;Source=Platypus;TC=158;TCF=28;TCR=130;TR=155,68;WE=112641265;WS=112641246;set=Platypus	GT:AF:DP	0/1:0.98:158
chr2	112641257	rs7575582	A	G	2103.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.664;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=0.703;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=0.056;QD=11.95;ReadPosRankSum=1.041;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:91,85:0.48:176
chr2	112641283	rs12233011	A	G	1493.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:60,55:0.48:115
chr2	112686988	rs13027171	G	A	5815.77	.	AC=1;AF=0.500;AN=2;DB;DP=549;set=Intersection	GT:AD:AF:DP	0/1:256,271:0.51:527
chr2	112687157	rs138909702	A	ATATTTATTTATT,ATATTTATTTATTTATT	3385.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=63.48;QD=51.30;SOR=3.293;set=HC	GT:AD:AF:DP	1/2:0,38,28:0.58,0.42:66
chr2	112702647	rs11683694	C	T	5541.77	.	AC=1;AF=0.500;AN=2;DB;DP=656;set=Intersection	GT:AD:AF:DP	0/1:365,287:0.44:652
chr2	112704862	rs7601798	A	G	639.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:1,34:0.97:35
chr2	112705157	rs3761701	T	C	2283.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr2	112705185	rs3761700	G	T	1804.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr2	112725684	rs113538397	A	ATGTG,ATGTGTG	7482.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.136;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=61.83;MQRankSum=0.476;QD=42.28;ReadPosRankSum=-0.686;SOR=0.652;set=HC	GT:AD:AF:DP	1/2:1,28,148:0.16,0.84:177
chr2	112740373	rs1996323	G	A	1442.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr2	112740596	rs57740008	GA	G	3665.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:105,97:0.48:202
chr2	112740598	rs57297275	T	G	3674.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:105,98:0.48:203
chr2	112751928	rs7604639	G	A	6723.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr2	112752142	rs7592909	A	C	1512.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr2	112752362	rs11287004	GA	G	125.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.327;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=4.123;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=1.451;QD=5.47;ReadPosRankSum=-0.106;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:10,13:0.57:23
chr2	112752880	rs6739294	G	A	10693.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	1/1:0,379:1.00:379
chr2	112753020	rs77702371	A	G	6834.77	.	AC=1;AF=0.500;AN=2;DB;DP=627;set=Intersection	GT:AD:AF:DP	0/1:299,320:0.52:619
chr2	112753097	rs6726639	A	C	12909.77	.	AC=2;AF=1.00;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	1/1:0,462:1.00:462
chr2	112753781	rs34346510	TA	T	11938.73	.	AC=2;AF=1.00;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	1/1:2,347:0.99:349
chr2	112753883	rs10173553	C	T	3009.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr2	112753950	rs13003919	G	A	395.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:29,18:0.38:47
chr2	112754720	rs4848238	A	C	360.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:13,16:0.55:29
chr2	112754828	rs3811632	G	T	2312.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:91,102:0.53:193
chr2	112754880	rs3811633	G	A	3067.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:181,150:0.45:331
chr2	112754943	rs3811634	C	T	4172.77	.	AC=1;AF=0.500;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	0/1:245,210:0.46:455
chr2	112755001	rs2230515	A	G	11817.77	.	AC=2;AF=1.00;AN=2;DB;DP=442;set=Intersection	GT:AD:AF:DP	1/1:2,439:1.00:441
chr2	112761653	rs4848933	C	G	3472.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr2	112765973	rs1131244	A	G	6228.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr2	112766262	rs10210692	A	G	7289.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr2	112766304	rs55766181	G	C	2553.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:158,126:0.44:284
chr2	112766319	rs55799805	T	C	2368.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:160,119:0.43:279
chr2	112767406	rs11884641	A	G	1245.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:74,53:0.42:127
chr2	112767483	rs11884693	A	G	3989.77	.	AC=1;AF=0.500;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	0/1:222,188:0.46:410
chr2	112767739	rs75313362	A	G	3035.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:171,136:0.44:307
chr2	112767824	rs77781750	A	G	1630.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:88,80:0.48:168
chr2	112767941	rs77306155	A	G	358.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:22,18:0.45:40
chr2	112770770	rs4374383	A	G	4918.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:2,178:0.99:180
chr2	112770798	rs4500955	T	C	6798.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.892;ClippingRankSum=0.000;DB;DP=198;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=34.51;ReadPosRankSum=-0.744;SOR=0.905;set=HC	GT:AD:AF:DP	1/1:2,195:0.99:197
chr2	112770798	.	TG	CA,CG	1265	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.44;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=21;MMLQ=28;MQ=60.0;NF=33,78;NR=24,58;PP=806,1265;QD=15.0783837695;SC=AGGCTGCAGCTGCATCACACA;SbPval=0.62;Source=Platypus;TC=138;TCF=78;TCR=60;TR=57,136;WE=112770807;WS=112770788;set=Platypus	GT:AF:DP	0/1:0.41:138
chr2	112770799	rs57116599	G	A	1842.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.112;ClippingRankSum=0.000;DB;DP=198;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.35;ReadPosRankSum=0.779;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:106,91:0.46:197
chr2	112773366	rs6710591	A	G	2052.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:2,77:0.97:79
chr2	112773500	rs6710733	A	G	1269.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:57,62:0.52:119
chr2	112773528	rs111619827	TCTTGTAC	T	4048.73	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr2	112776913	rs3841094	T	TC	3874.73	.	AC=1;AF=0.500;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	0/1:240,182:0.43:422
chr2	112776979	rs3811640	C	A	4348.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.744;ClippingRankSum=0.000;DB;DP=535;ExcessHet=3.0103;FS=2.460;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.976;QD=8.21;ReadPosRankSum=-0.106;SOR=0.896;set=HC	GT:AD:AF:DP	0/1:299,231:0.44:530
chr2	112779286	rs10667527	A	ATC	3458.73	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr2	112785770	rs6738237	A	G	563.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:19,23:0.55:42
chr2	112785775	rs4848958	T	C	509.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:29,23:0.44:52
chr2	112786523	rs147500027	A	AT	1020.73	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:54,47:0.47:101
chr2	112813163	rs10176769	G	A	308.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:21,13:0.38:34
chr2	112813391	rs9308665	C	G	1977.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:99,94:0.49:193
chr2	112821621	rs114914491	A	T	353.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:20,15:0.43:35
chr2	112832535	rs71385858	CAAT	C	3386.73	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:73,87:0.54:160
chr2	112832684	rs6542026	G	A	1071.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr2	112847164	rs11123128	C	T	4380.77	.	AC=1;AF=0.500;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	0/1:172,208:0.55:380
chr2	112856165	rs4849007	C	A	1941.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:116,94:0.45:210
chr2	112858122	rs4848272	C	T	394.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:31,20:0.39:51
chr2	112865517	rs7562848	G	C	2571.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr2	112917102	rs1320360	G	C	966.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:28,36:0.56:64
chr2	112945188	rs4848281	T	A	5558.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr2	113074775	rs5833444	C	CT	445.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.495;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=8.312;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.175;QD=6.11;ReadPosRankSum=0.696;SOR=0.607;set=HC	GT:AD:AF:DP	0/1:39,34:0.47:73
chr2	113082250	rs59100751	CT	C	3162.73	.	AC=1;AF=0.500;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	0/1:160,168:0.51:328
chr2	113082802	.	T	TA	3354.73	.	AC=1;AF=0.500;AN=2;DP=261;set=Intersection	GT:AD:AF:DP	0/1:136,115:0.46:251
chr2	113089267	rs7601200	T	C	6809.77	.	AC=1;AF=0.500;AN=2;DB;DP=600;set=Intersection	GT:AD:AF:DP	0/1:283,315:0.53:598
chr2	113090047	rs4578863	T	C	2718.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:130,135:0.51:265
chr2	113258671	rs62157516	G	A	830.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:54,36:0.40:90
chr2	113258916	rs17846193	C	T	935.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:80,45:0.36:125
chr2	113277707	.	CAA	C	185.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.261;ClippingRankSum=0.000;DP=84;ExcessHet=3.0103;FS=3.137;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.69;ReadPosRankSum=1.122;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:52,17:0.25:69
chr2	113277949	rs62157538	T	C	2439.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:157,123:0.44:280
chr2	113286388	rs201349610	G	C	7668.77	.	AC=1;AF=0.500;AN=2;DB;DP=766;set=Intersection	GT:AD:AF:DP	0/1:394,360:0.48:754
chr2	113300330	rs4849071	G	A	1533.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:51,57:0.53:108
chr2	113305150	rs11123139	G	C	3903.77	.	AC=1;AF=0.500;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	0/1:183,185:0.50:368
chr2	113307023	.	C	CT	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.866;ClippingRankSum=0.000;DP=118;ExcessHet=3.0103;FS=1.191;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.54;ReadPosRankSum=0.403;SOR=0.881;set=HC	GT:AD:AF:DP	0/1:64,14:0.18:78
chr2	113308516	rs2304555	T	A	5933.77	.	AC=1;AF=0.500;AN=2;DB;DP=511;set=Intersection	GT:AD:AF:DP	0/1:226,279:0.55:505
chr2	113308622	rs3816140	C	T	1824.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:63,77:0.55:140
chr2	113309473	rs1545133	C	T	4712.77	.	AC=1;AF=0.500;AN=2;DB;DP=499;set=Intersection	GT:AD:AF:DP	0/1:257,235:0.48:492
chr2	113310197	rs11351307	CT	C	796.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.590;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=1.487;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.95;ReadPosRankSum=1.082;SOR=0.874;set=HC	GT:AD:AF:DP	0/1:71,63:0.47:134
chr2	113315735	rs57858974	CT	C	119.73	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:9,8:0.47:17
chr2	113321900	rs41280572	T	C	527.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:35,25:0.42:60
chr2	113326281	rs6746874	C	G	594.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:36,25:0.41:61
chr2	113326502	rs13010814	C	T	2223.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:121,107:0.47:228
chr2	113344047	rs752992	T	C	11325.77	.	AC=1;AF=0.500;AN=2;DB;DP=1015;set=Intersection	GT:AD:AF:DP	0/1:474,536:0.53:1010
chr2	113346413	rs3748024	C	G	2160.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:91,96:0.51:187
chr2	113346512	rs1047652	A	C	1890.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:114,97:0.46:211
chr2	113479614	rs13386452	G	A	22037.77	.	AC=2;AF=1.00;AN=2;DB;DP=826;MQ=60.07;set=Intersection	GT:AD:AF:DP	1/1:1,819:1.00:820
chr2	113479745	rs34781106	AC	A	14658.73	.	AC=2;AF=1.00;AN=2;DB;DP=523;set=Intersection	GT:AD:AF:DP	1/1:0,467:1.00:467
chr2	113480938	.	G	GCACACACACACA	2522.73	.	AC=2;AF=1.00;AN=2;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.75;QD=39.42;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr2	113481439	rs13384583	T	A	7356.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.514;ClippingRankSum=0.000;DB;DP=300;ExcessHet=3.0103;FS=9.104;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.37;ReadPosRankSum=0.132;SOR=1.284;set=HC	GT:AD:AF:DP	1/1:2,288:0.99:290
chr2	113481547	rs2063919	A	G	4328.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr2	113482779	rs4849116	A	C	21838.77	.	AC=2;AF=1.00;AN=2;DB;DP=800;set=Intersection	GT:AD:AF:DP	1/1:1,791:1.00:792
chr2	113484319	rs2138604	G	A	12907.77	.	AC=2;AF=1.00;AN=2;DB;DP=470;set=Intersection	GT:AD:AF:DP	1/1:0,469:1.00:469
chr2	113484353	rs2138605	A	G	8507.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr2	113484441	rs2138606	T	G	2210.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr2	113513825	rs6731822	T	C	17265.77	.	AC=2;AF=1.00;AN=2;DB;DP=667;set=Intersection	GT:AD:AF:DP	1/1:0,650:1.00:650
chr2	113514883	rs11311327	AT	A	507.74	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:6,28:0.82:34
chr2	113532885	rs3783550	G	T	5513.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr2	113535395	rs2071376	G	T	1779.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr2	113540205	rs1609682	G	T	6215.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr2	113671303	rs3811045	T	C	19175.77	.	AC=2;AF=1.00;AN=2;DB;DP=712;set=Intersection	GT:AD:AF:DP	1/1:0,707:1.00:707
chr2	113671378	rs3811046	G	T	20677.77	.	AC=2;AF=1.00;AN=2;DB;DP=781;set=Intersection	GT:AD:AF:DP	1/1:0,775:1.00:775
chr2	113671410	rs3811047	A	G	16355.77	.	AC=2;AF=1.00;AN=2;DB;DP=619;set=Intersection	GT:AD:AF:DP	1/1:1,613:1.00:614
chr2	113671518	rs3811048	G	A	3898.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr2	113763463	rs2305152	A	C	5306.77	.	AC=1;AF=0.500;AN=2;DB;DP=462;set=Intersection	GT:AD:AF:DP	0/1:202,255:0.56:457
chr2	113763575	rs895497	A	G	8775.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,323:1.00:323
chr2	113765587	rs34817588	A	T	2060.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:92,87:0.49:179
chr2	113783570	rs13030063	C	T	1909.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr2	113783909	rs6744874	A	T	2954.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr2	113785020	rs12711747	A	G	1627.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr2	113785202	rs11673918	G	A	12541.77	.	AC=2;AF=1.00;AN=2;DB;DP=478;set=Intersection	GT:AD:AF:DP	1/1:0,471:1.00:471
chr2	113785727	rs1562304	A	G	2534.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.26;SOR=1.240;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr2	113786833	rs3948121	C	G	903.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	113789316	rs2305150	C	T	2277.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr2	113816940	rs2278716	C	G	6159.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.63;SOR=0.973;set=HC	GT:AD:AF:DP	1/1:0,135:1.00:135
chr2	113816940	.	CCA	GCC	2703	.	AC=2;AF=1.00;AN=2;BRF=0.5;FR=1.0000;HP=1;HapScore=1;MGOF=1;MMLQ=27;MQ=59.93;NF=50;NR=33;PP=2703;QD=20;SC=CAGACCCCAGCCAACTCAGCC;SbPval=0.57;Source=Platypus;TC=89;TCF=53;TCR=36;TR=83;WE=113816950;WS=113816930;set=Platypus	GT:AD:AF:DP	1/1:6,83:0.93:89
chr2	113816942	rs2278717	A	C	6159.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.00;SOR=0.945;set=HC	GT:AD:AF:DP	1/1:0,140:1.00:140
chr2	113818632	rs2251872	G	A	2588.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr2	113818702	rs2515395	G	C	926.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr2	113819614	rs2252007	T	C	3113.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr2	113830201	rs3811051	T	G	3543.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr2	113830563	rs12469822	G	A	923.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	113830582	rs4849150	A	C	720.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	113832312	rs6761276	T	C	5994.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr2	113832333	rs6743376	C	A	4902.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr2	113832981	rs13005572	C	T	1844.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:93,92:0.50:185
chr2	113875509	rs2234677	G	A	366.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.327;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=1.122;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.01;ReadPosRankSum=-0.125;SOR=1.008;set=HC	GT:AD:AF:DP	0/1:36,25:0.41:61
chr2	113875565	rs2234678	A	G	1782.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:68,50:0.42:118
chr2	113875584	rs2234679	G	C	1796.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:87,53:0.38:140
chr2	113875631	rs16065	T	C	1658.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:111,81:0.42:192
chr2	113875753	rs4251969	C	G	2130.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:62,61:0.50:123
chr2	113875773	rs4251970	A	G	1851.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:55,49:0.47:104
chr2	113877495	rs928940	G	T	1626.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr2	113877538	rs4251986	G	C	611.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:51,33:0.39:84
chr2	113877713	rs878972	A	C	745.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:56,39:0.41:95
chr2	113887207	rs419598	T	C	6250.77	.	AC=1;AF=0.500;AN=2;DB;DP=693;set=Intersection	GT:AD:AF:DP	0/1:373,318:0.46:691
chr2	113887262	rs423904	C	T	4376.77	.	AC=1;AF=0.500;AN=2;DB;DP=510;set=Intersection	GT:AD:AF:DP	0/1:292,218:0.43:510
chr2	113887273	rs446433	G	A	3727.77	.	AC=1;AF=0.500;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	0/1:261,184:0.41:445
chr2	113887294	rs495282	G	C	2950.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:194,140:0.42:334
chr2	113887338	rs495410	A	C	1615.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:98,67:0.41:165
chr2	113888557	rs451578	G	A	3520.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:64,90:0.58:154
chr2	113888579	rs432014	T	C	3936.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:86,111:0.56:197
chr2	113888793	rs454078	A	T	4224.77	.	AC=1;AF=0.500;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	0/1:226,210:0.48:436
chr2	113888900	rs380092	T	A	2385.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr2	113940681	rs3748914	T	C	3924.77	.	AC=1;AF=0.500;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	0/1:212,185:0.47:397
chr2	113940839	rs4849167	G	C	6136.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.022;ClippingRankSum=0.000;DB;DP=636;ExcessHet=3.0103;FS=1.101;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.69;ReadPosRankSum=-0.501;SOR=0.778;set=HC	GT:AD:AF:DP	0/1:327,306:0.48:633
chr2	113942903	rs1975535	A	C	1783.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:84,77:0.48:161
chr2	113943470	rs2241976	A	G	6487.77	.	AC=1;AF=0.500;AN=2;DB;DP=612;set=Intersection	GT:AD:AF:DP	0/1:307,302:0.50:609
chr2	113953401	rs923693	A	G	23249.77	.	AC=2;AF=1.00;AN=2;DB;DP=851;set=Intersection	GT:AD:AF:DP	1/1:2,845:1.00:847
chr2	113953508	rs6755077	G	A	3437.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:164,162:0.50:326
chr2	113953984	rs7603621	G	A	965.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:32,43:0.57:75
chr2	113955233	rs45449699	C	T	4307.77	.	AC=1;AF=0.500;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	0/1:197,199:0.50:396
chr2	113977862	rs4849175	T	G	1033.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr2	113984594	rs67776659	T	C	2212.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:72,97:0.57:169
chr2	113994417	rs1110839	G	T	2689.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:93,123:0.57:216
chr2	114000458	rs902691	C	A	1187.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr2	114386172	rs368603894	A	G	110.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.455;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=39.92;MQRankSum=0.674;QD=9.23;ReadPosRankSum=-1.434;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:6,6:0.50:12
chr2	114386338	rs149500718	G	A	648.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.188;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=48.06;MQRankSum=-1.266;QD=9.83;ReadPosRankSum=2.242;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:33,33:0.50:66
chr2	114387907	rs1964835	C	T	3164.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:145,147:0.50:292
chr2	114387950	rs1040646	G	A	1636.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:58,63:0.52:121
chr2	114392716	rs146907164	C	T	2935.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:132,147:0.53:279
chr2	114425263	rs187515355	T	C	901.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=14.914;MLEAC=2;MLEAF=1.000;MQ=49.45;MQRankSum=0.295;QD=29.09;ReadPosRankSum=1.763;SOR=6.868;set=HC	GT:AD:AF:DP	1/1:1,30:0.97:31
chr2	114425425	rs145764632	C	A	1528.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.999;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=0.668;MLEAC=1;MLEAF=0.500;MQ=44.61;MQRankSum=-0.135;QD=9.15;ReadPosRankSum=-0.009;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:98,69:0.41:167
chr2	114426115	rs80314553	T	C	2818.77	.	AC=1;AF=0.500;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	0/1:234,150:0.39:384
chr2	114429542	rs13003858	G	A	2379.73	.	AC=1;AF=0.500;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	0/1:246,133:0.35:379
chr2	114429576	rs12986781	T	C	2739.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:196,133:0.40:329
chr2	114476582	rs6741521	C	A	404.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:9,17:0.65:26
chr2	114480812	rs3835109	A	AAAC	496.73	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:32,15:0.32:47
chr2	114480881	rs73955056	A	G	150.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr2	114486880	rs3841578	GA	G	106.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.327;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.12;ReadPosRankSum=-1.911;SOR=0.346;set=HC	GT:AD:AF:DP	0/1:6,9:0.60:15
chr2	114486907	rs4849269	T	C	353.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:8,14:0.64:22
chr2	114492135	rs2305254	C	T	1882.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:89,92:0.51:181
chr2	114493524	rs10199704	C	T	983.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:75,53:0.41:128
chr2	114501242	rs3748907	T	C	2106.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:100,104:0.51:204
chr2	114513386	rs7578249	C	T	2803.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:109,133:0.55:242
chr2	114513787	rs4538208	C	G	5495.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr2	114514098	rs7592689	A	C	901.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:37,38:0.51:75
chr2	114685112	rs114812278	T	C	384.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:21,20:0.49:41
chr2	114689047	.	C	CT	26	.	AC=1;AF=0.500;AN=2;BRF=0.5;FR=0.5048;HP=13;HapScore=3;MGOF=41;MMLQ=25;MQ=60.0;NF=0;NR=2;PP=26;QD=15.5;SC=AAAATACGTACTTTTTTTTTT;SbPval=1.0;Source=Platypus;TC=7;TCF=0;TCR=7;TR=2;WE=114689056;WS=114689037;set=Platypus	GT:AD:AF:DP	0/1:5,2:0.29:7
chr2	114691809	rs5833524	G	GT	42.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.348;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=1.316;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.63;ReadPosRankSum=-1.420;SOR=1.099;set=HC	GT:AD:AF:DP	0/1:55,13:0.19:68
chr2	115919677	rs7557011	CT	GC	1807.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	116066984	rs975453	G	A	2943.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr2	116099725	rs843403	A	T	4291.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr2	116283668	rs984066	G	A	848.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:44,41:0.48:85
chr2	116497479	rs1550854	A	G	6232.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr2	116497528	rs1550853	A	G	2382.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr2	116510817	rs2053724	G	C	6538.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr2	116525960	rs1446495	G	A	6828.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr2	116548526	rs6735355	A	G	586.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	116548820	rs3738879	C	T	4412.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr2	116593675	rs10549769	ATG	A	5444.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.456;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.12;MQRankSum=0.197;QD=32.60;ReadPosRankSum=-0.225;SOR=1.165;set=HC	GT:AD:AF:DP	1/1:2,165:0.99:167
chr2	116593695	.	GATAT	G,GAT	4949.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.210;ClippingRankSum=0.000;DP=224;ExcessHet=3.0103;FS=2.007;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.24;MQRankSum=0.757;QD=24.03;ReadPosRankSum=-0.410;SOR=0.834;set=HC	GT:AD:AF:DP	1/2:19,57,130:0.28,0.63:206
chr2	116598546	rs272011	G	A	686.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	116599659	rs272010	A	T	1585.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr2	116599927	rs272009	T	C	3556.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr2	118575215	rs1052637	C	G	2963.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr2	118575468	rs6737733	C	T	370.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:10,15:0.60:25
chr2	118579145	rs10515923	G	A	1077.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:47,45:0.49:92
chr2	118583249	rs17047457	G	A	6174.77	.	AC=1;AF=0.500;AN=2;DB;DP=557;set=Intersection	GT:AD:AF:DP	0/1:262,287:0.52:549
chr2	118688754	rs971754	T	C	9025.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chr2	118694477	rs55918624	T	C	4122.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr2	118701764	rs3732320	C	T	2128.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr2	118704478	rs7580124	T	G	6430.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:1,244:1.00:245
chr2	118704503	rs2303329	A	G	4893.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr2	118705570	rs10186396	A	G	5384.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr2	118706879	rs1035598	A	G	10365.77	.	AC=2;AF=1.00;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	1/1:0,394:1.00:394
chr2	118732975	rs6722547	T	C	1377.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr2	118735395	rs889899	G	A	1373.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr2	118753148	rs10633675	A	ATC	4878.73	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr2	118766024	rs10864966	A	G	5724.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr2	118771663	rs12477588	A	G	7588.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:2,273:0.99:275
chr2	119591683	rs7588093	C	A	866.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:40,40:0.50:80
chr2	119700096	rs2077344	T	C	3725.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:1,120:0.99:121
chr2	119732042	rs11693199	T	C	2612.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:128,117:0.48:245
chr2	119734894	rs60485337	AAGAGAG	A	3376.73	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:82,90:0.52:172
chr2	119735251	rs2278590	C	T	1252.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:52,54:0.51:106
chr2	119739063	rs6761637	T	C	1290.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.583;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=1.393;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.78;ReadPosRankSum=0.620;SOR=0.543;set=HC	GT:AD:AF:DP	0/1:68,64:0.48:132
chr2	119739127	.	C	CT	279.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.689;ClippingRankSum=0.000;DP=145;ExcessHet=3.0103;FS=3.053;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=2.150;QD=2.22;ReadPosRankSum=-0.086;SOR=1.136;set=HC	GT:AD:AF:DP	0/1:91,35:0.28:126
chr2	119739182	rs10211503	T	C	2000.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.566;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=0.529;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=-1.448;QD=10.48;ReadPosRankSum=0.520;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:93,98:0.51:191
chr2	119739269	rs56216274	C	T	2510.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;MQ=60.05;set=Intersection	GT:AD:AF:DP	0/1:89,119:0.57:208
chr2	119749477	rs2304708	T	G	10772.77	.	AC=2;AF=1.00;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	1/1:0,400:1.00:400
chr2	119749611	rs4848530	C	T	982.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:47,44:0.48:91
chr2	119749858	rs3765035	A	G	488.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	119751867	rs11678719	C	T	1907.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:64,81:0.56:145
chr2	119752066	rs61732822	G	C	2009.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:118,104:0.47:222
chr2	119915132	rs11308896	CG	C	1798.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr2	119915249	rs7556873	T	C	9250.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	1/1:0,335:1.00:335
chr2	119988565	rs838100	G	A	4628.77	.	AC=1;AF=0.500;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	0/1:245,225:0.48:470
chr2	120003642	rs838083	C	T	1782.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr2	120005840	rs67985074	TC	T	6367.73	.	AC=1;AF=0.500;AN=2;DB;DP=475;set=Intersection	GT:AD:AF:DP	0/1:173,263:0.60:436
chr2	120012171	rs12711924	G	A	1333.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:46,58:0.56:104
chr2	120014985	rs838072	A	G	4338.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr2	120059895	rs16744	G	GGAAA	538.73	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:18,15:0.45:33
chr2	120059988	rs1890	T	C	1583.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:69,76:0.52:145
chr2	120060082	rs1052500	T	C	1811.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:82,86:0.51:168
chr2	120069281	.	TA	T	219.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.093;ClippingRankSum=0.000;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.93;ReadPosRankSum=-2.167;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:84,30:0.26:114
chr2	120078778	rs1132267	T	C	405.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:40,21:0.34:61
chr2	120125029	rs2084202	A	G	3093.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:161,137:0.46:298
chr2	120125936	rs2244135	T	C	1128.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:62,54:0.47:116
chr2	120187344	rs11123523	A	G	1668.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr2	120189404	rs4340531	A	G	225.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	120189433	rs4599130	G	C	328.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	120194651	rs3217464	A	AGTGTGC	32427.73	.	AC=2;AF=1.00;AN=2;DB;DP=739;set=Intersection	GT:AD:AF:DP	1/1:0,715:1.00:715
chr2	120197670	rs1042656	G	A	3520.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr2	120199140	rs1126839	A	G	22793.77	.	AC=2;AF=1.00;AN=2;DB;DP=876;set=Intersection	GT:AD:AF:DP	1/1:0,862:1.00:862
chr2	120209689	rs2587692	A	G	8026.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr2	120221585	rs2253870	G	A	2699.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:1,93:0.99:94
chr2	120221984	rs2579647	A	C	1479.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr2	120230998	rs2579641	G	A	2987.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr2	120231110	rs41279774	T	C	1727.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:83,83:0.50:166
chr2	120231165	rs2587701	T	C	3133.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr2	120231303	rs2587702	T	C	430.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	120303820	rs2579624	A	T	1812.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:111,87:0.44:198
chr2	120317425	rs140381233	G	A	3956.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.092;ClippingRankSum=0.000;DB;DP=368;ExcessHet=3.0103;FS=1.710;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.96;ReadPosRankSum=-1.675;SOR=0.786;set=HC	GT:AD:AF:DP	0/1:173,188:0.52:361
chr2	120362407	rs1568540	C	T	10286.77	.	AC=2;AF=1.00;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	1/1:0,393:1.00:393
chr2	120362897	rs1521914	T	A	5300.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr2	120366057	rs11398750	G	GT	2547.73	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:10,135:0.93:145
chr2	120369300	rs10864986	T	C	10675.77	.	AC=2;AF=1.00;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	1/1:0,409:1.00:409
chr2	120385094	rs200629080	GATATATAT	G,GAT	3046.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=99;set=Intersection	GT:AF:DP	1/2:0.26,0.72:89
chr2	120387637	rs12711931	G	C	1087.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	120388412	rs2272058	G	A	12521.77	.	AC=2;AF=1.00;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	1/1:0,474:1.00:474
chr2	120404629	.	ATT	A,AT	4985.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.346;ClippingRankSum=0.000;DP=453;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.19;MQRankSum=1.009;QD=14.00;ReadPosRankSum=-0.337;SOR=0.691;set=HC	GT:AD:AF:DP	1/2:38,82,236:0.23,0.66:356
chr2	120409430	rs1521912	A	G	1373.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr2	120414083	rs6761357	C	T	2387.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr2	120438523	rs13011768	A	G	17873.77	.	AC=2;AF=1.00;AN=2;DB;DP=654;set=Intersection	GT:AD:AF:DP	1/1:0,640:1.00:640
chr2	120438696	rs939777	A	G	25867.77	.	AC=2;AF=1.00;AN=2;DB;DP=929;set=Intersection	GT:AD:AF:DP	1/1:0,918:1.00:918
chr2	120439230	rs1983406	C	G	14972.77	.	AC=2;AF=1.00;AN=2;DB;DP=548;set=Intersection	GT:AD:AF:DP	1/1:0,541:1.00:541
chr2	120443443	rs939778	A	G	3723.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr2	120567392	.	AT	A	138.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.338;ClippingRankSum=0.000;DP=473;ExcessHet=3.0103;FS=6.702;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=4.269;QD=0.31;ReadPosRankSum=-0.485;SOR=1.109;set=HC	GT:AD:AF:DP	0/1:373,81:0.18:454
chr2	120689905	rs2292361	A	G	2053.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr2	120703842	rs2289581	A	G	538.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	120704164	rs3214717	A	AT	3578.73	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:2,85:0.98:87
chr2	120704166	rs2289580	G	T	3587.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:2,83:0.98:85
chr2	120718322	rs12618050	A	G	1093.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr2	120718672	rs6737776	T	G	561.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	120725704	rs10194955	A	G	1475.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr2	120776972	rs3216703	TG	T	1046.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr2	120830815	rs3738970	A	G	2173.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr2	120885310	rs1034489	G	A	11480.77	.	AC=2;AF=1.00;AN=2;DB;DP=439;set=Intersection	GT:AD:AF:DP	1/1:4,432:0.99:436
chr2	120889173	rs3738968	G	C	6137.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:6,266:0.98:272
chr2	120918585	rs12617570	A	C	7192.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr2	120980428	rs11550347	G	C	17880.77	.	AC=2;AF=1.00;AN=2;DB;DP=641;set=Intersection	GT:AD:AF:DP	1/1:1,638:1.00:639
chr2	120997869	rs6746072	A	T	1720.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.194;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.36;ReadPosRankSum=0.684;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:27,85:0.76:112
chr2	121036385	rs12711939	TT	GA	5451.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr2	121038290	rs113531689	GA	G	586.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.594;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=1.338;MLEAC=1;MLEAF=0.500;MQ=60.51;MQRankSum=1.021;QD=9.62;ReadPosRankSum=-0.876;SOR=1.078;set=HC	GT:AD:AF:DP	0/1:18,43:0.70:61
chr2	121043403	rs4091515	G	A	1433.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr2	121708663	rs10864866	A	G	2077.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr2	121713022	rs6718382	C	G	6632.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.52;SOR=2.660;set=HC	GT:AD:AF:DP	1/1:0,156:1.00:156
chr2	121713030	rs12614482	G	A	6160.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.97;SOR=2.734;set=HC	GT:AD:AF:DP	1/1:0,137:1.00:137
chr2	121713041	rs12617878	T	C	3709.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr2	121726447	rs2592595	G	A	23392.77	.	AC=2;AF=1.00;AN=2;DB;DP=865;set=Intersection	GT:AD:AF:DP	1/1:0,848:1.00:848
chr2	121729323	rs2677507	A	G	1055.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr2	121729360	rs2592592	T	C	2336.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr2	121729490	rs2592591	C	T	10719.77	.	AC=2;AF=1.00;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	1/1:0,409:1.00:409
chr2	121729686	rs2592590	T	C	3210.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr2	121730138	rs3106962	C	G	2265.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr2	121740190	rs1968619	C	T	5683.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.47;SOR=3.276;set=HC	GT:AD:AF:DP	1/1:0,125:1.00:125
chr2	121740194	rs1530580	T	G	5845.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.98;SOR=2.885;set=HC	GT:AD:AF:DP	1/1:0,136:1.00:136
chr2	121740505	rs280196	C	T	5551.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;MQ=60.05;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr2	121742307	rs13008360	C	T	1891.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:85,86:0.50:171
chr2	121744225	rs2276553	A	G	1990.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:81,91:0.53:172
chr2	121746956	rs3738880	G	T	6280.77	.	AC=1;AF=0.500;AN=2;DB;DP=598;set=Intersection	GT:AD:AF:DP	0/1:309,286:0.48:595
chr2	121747406	rs12711538	G	A	7100.77	.	AC=1;AF=0.500;AN=2;DB;DP=645;set=Intersection	GT:AD:AF:DP	0/1:312,321:0.51:633
chr2	121747429	rs10167980	A	G	5880.77	.	AC=1;AF=0.500;AN=2;DB;DP=586;set=Intersection	GT:AD:AF:DP	0/1:298,279:0.48:577
chr2	121981950	rs11890430	A	G	1159.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:66,59:0.47:125
chr2	121982011	rs4384798	T	A	1289.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:59,61:0.51:120
chr2	121989489	rs2304667	G	A	2271.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:130,112:0.46:242
chr2	121989683	.	T	TTTTTGTTTTG	492.74	.	AC=2;AF=1.00;AN=2;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.91;QD=37.90;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	122004596	rs2252862	C	G	2179.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:75,90:0.55:165
chr2	122005928	rs1530124	C	T	4742.77	.	AC=1;AF=0.500;AN=2;DB;DP=476;MQ=60.02;set=Intersection	GT:AD:AF:DP	0/1:242,225:0.48:467
chr2	122006851	rs17006283	A	C	217.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:7,11:0.61:18
chr2	122007378	rs2119021	A	C	1414.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:57,58:0.50:115
chr2	122042750	rs13415738	A	T	1628.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:83,80:0.49:163
chr2	122135069	.	AC	A	3084.73	.	AC=1;AF=0.500;AN=2;DP=221;MQ=60.05;set=Intersection	GT:AD:AF:DP	0/1:125,96:0.43:221
chr2	122176128	.	G	A	1791.77	.	AC=1;AF=0.500;AN=2;DP=183;set=Intersection	GT:AD:AF:DP	0/1:94,85:0.47:179
chr2	122176435	.	G	T	1335.77	.	AC=1;AF=0.500;AN=2;DP=114;set=Intersection	GT:AD:AF:DP	0/1:51,62:0.55:113
chr2	125192068	rs1425745	T	C	7115.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr2	125204285	rs11689115	G	T	864.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:21,33:0.61:54
chr2	125232609	rs4411700	G	T	2557.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr2	125405302	rs924802	C	T	6651.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr2	125669260	rs2602655	A	G	239.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:16,11:0.41:27
chr2	127447763	rs6709803	G	A	3476.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr2	127453479	rs4538146	G	A	1993.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:64,88:0.58:152
chr2	127453664	rs1050967	A	C	12222.77	.	AC=2;AF=1.00;AN=2;DB;DP=469;set=Intersection	GT:AD:AF:DP	1/1:0,454:1.00:454
chr2	127657221	rs3795873	C	T	5443.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr2	127807941	rs7568161	C	T	1718.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:65,74:0.53:139
chr2	127808161	rs7558000	G	A	4474.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.952;ClippingRankSum=0.000;DB;DP=261;ExcessHet=3.0103;FS=3.406;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.28;ReadPosRankSum=1.475;SOR=0.899;set=HC	GT:AD:AF:DP	0/1:138,121:0.47:259
chr2	127808170	rs7558001	G	A	4401.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.839;ClippingRankSum=0.000;DB;DP=245;ExcessHet=3.0103;FS=4.324;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.04;ReadPosRankSum=1.458;SOR=0.965;set=HC	GT:AD:AF:DP	0/1:129,115:0.47:244
chr2	127809840	rs61748155	C	A	758.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:48,37:0.44:85
chr2	127816743	rs6720741	G	T	2609.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:121,128:0.51:249
chr2	127818406	rs1108031	G	A	1056.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:49,43:0.47:92
chr2	127819669	rs115112451	C	T	3814.77	.	AC=1;AF=0.500;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	0/1:167,180:0.52:347
chr2	127821411	.	G	GCAGCACGCAGGCTGGGCACCA	3458.73	.	AC=1;AF=0.500;AN=2;DP=245;set=Intersection	GT:AD:AF:DP	0/1:127,83:0.40:210
chr2	127826533	rs1060743	A	G	5989.77	.	AC=1;AF=0.500;AN=2;DB;DP=665;set=Intersection	GT:AD:AF:DP	0/1:356,308:0.46:664
chr2	127826632	rs67327804	A	G	2990.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:126,130:0.51:256
chr2	127834136	rs2276575	T	C	3491.77	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:159,168:0.51:327
chr2	127834369	rs62157856	C	T	1300.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:22,38:0.63:60
chr2	127834384	rs13387613	T	C	1139.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:20,29:0.59:49
chr2	127839474	rs11682128	G	A	5463.77	.	AC=1;AF=0.500;AN=2;DB;DP=490;set=Intersection	GT:AD:AF:DP	0/1:224,256:0.53:480
chr2	127839513	rs61525314	G	A	3109.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:110,131:0.54:241
chr2	127944781	rs11384285	A	AC	696.73	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:17,21:0.55:38
chr2	127945023	rs75876537	C	G	1476.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:98,76:0.44:174
chr2	127953054	rs7568070	A	C	1512.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:112,82:0.42:194
chr2	128015143	rs4150523	G	A	1076.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:42,51:0.55:93
chr2	128015367	rs4662718	C	T	663.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:33,31:0.48:64
chr2	128028792	rs4150499	T	C	905.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:59,44:0.43:103
chr2	128029065	rs11345447	GA	G	1062.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.124;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=2.537;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.43;ReadPosRankSum=1.649;SOR=0.486;set=HC	GT:AD:AF:DP	0/1:55,71:0.56:126
chr2	128050134	rs4150402	T	C	624.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:23,26:0.53:49
chr2	128079806	rs3732209	A	G	1516.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:71,72:0.50:143
chr2	128087651	rs61422716	C	T	1924.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:136,94:0.41:230
chr2	128175875	rs1799809	G	A	1568.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:87,75:0.46:162
chr2	128176040	rs1799810	A	T	4960.77	.	AC=1;AF=0.500;AN=2;DB;DP=503;set=Intersection	GT:AD:AF:DP	0/1:254,242:0.49:496
chr2	128176195	rs2854700	G	A	1705.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr2	128177377	rs1158867	C	T	958.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:32,44:0.58:76
chr2	128180872	rs5936	G	T	2253.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:89,99:0.53:188
chr2	128181028	rs1878844	A	G	6259.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr2	128181234	rs2069922	GC	G	892.73	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:16,34:0.68:50
chr2	128183914	rs2069928	G	T	1091.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:36,43:0.54:79
chr2	128184770	rs5937	T	C	1631.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:100,84:0.46:184
chr2	128249441	rs334152	C	T	454.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:22,18:0.45:40
chr2	128253571	rs334151	C	T	2195.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:105,106:0.50:211
chr2	128263363	rs72159568	CA	C	198.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.517;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=1.384;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=1.101;QD=4.23;ReadPosRankSum=0.868;SOR=0.404;set=HC	GT:AD:AF:DP	0/1:28,19:0.40:47
chr2	128283747	rs138706801	C	G	2906.77	.	AC=1;AF=0.500;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	0/1:250,158:0.39:408
chr2	128342547	rs4662741	G	A	1934.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:88,88:0.50:176
chr2	128346228	rs11673952	A	C	361.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:22,15:0.41:37
chr2	128350551	rs11678239	G	A	4439.77	.	AC=1;AF=0.500;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	0/1:177,196:0.53:373
chr2	128350578	rs58867441	T	TG	7690.73	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr2	128351346	rs7558838	T	C	814.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:33,38:0.54:71
chr2	128363530	rs11382004	G	GC	5402.73	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr2	128367092	rs777432	G	A	8148.77	.	AC=1;AF=0.500;AN=2;DB;DP=769;set=Intersection	GT:AD:AF:DP	0/1:377,386:0.51:763
chr2	128369752	rs12053039	A	G	1697.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:62,81:0.57:143
chr2	128369896	rs777435	A	G	7190.77	.	AC=1;AF=0.500;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	0/1:164,194:0.54:358
chr2	128369917	rs12052654	C	T	7100.77	.	AC=1;AF=0.500;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	0/1:165,197:0.54:362
chr2	128370200	rs705092	G	A	539.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:45,26:0.37:71
chr2	128377833	rs2248519	C	G	1861.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:71,80:0.53:151
chr2	128382859	rs2245297	C	T	328.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:12,13:0.52:25
chr2	128385224	rs10164978	C	G	6433.77	.	AC=1;AF=0.500;AN=2;DB;DP=602;set=Intersection	GT:AD:AF:DP	0/1:307,291:0.49:598
chr2	128386120	rs144295028	TGGGTG	T	76.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.597;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.51;ReadPosRankSum=-0.850;SOR=0.120;set=HC	GT:AD:AF:DP	0/1:13,4:0.24:17
chr2	128388790	rs13025791	G	A	3655.77	.	AC=1;AF=0.500;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	0/1:193,180:0.48:373
chr2	128388862	rs13025959	G	C	3730.77	.	AC=1;AF=0.500;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	0/1:195,179:0.48:374
chr2	128389343	rs10208043	C	T	3599.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:179,167:0.48:346
chr2	128389422	rs10183797	G	C	1091.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:43,49:0.53:92
chr2	128393261	rs2255178	T	C	1530.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:68,69:0.50:137
chr2	128393289	rs2255177	T	C	2212.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:86,96:0.53:182
chr2	128393800	rs2255161	T	C	9032.77	.	AC=1;AF=0.500;AN=2;DB;DP=912;set=Intersection	GT:AD:AF:DP	0/1:455,451:0.50:906
chr2	128394758	rs2255039	T	C	3569.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:146,162:0.53:308
chr2	128394875	rs59579995	C	CA	13929.73	.	AC=1;AF=0.500;AN=2;DB;DP=798;set=Intersection	GT:AD:AF:DP	0/1:422,363:0.46:785
chr2	128394877	rs56272236	C	T	13937.77	.	AC=1;AF=0.500;AN=2;DB;DP=789;set=Intersection	GT:AD:AF:DP	0/1:424,363:0.46:787
chr2	128394955	rs11686946	A	G	6400.77	.	AC=1;AF=0.500;AN=2;DB;DP=685;set=Intersection	GT:AD:AF:DP	0/1:365,315:0.46:680
chr2	128396807	rs891515	A	G	1465.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:60,67:0.53:127
chr2	128400608	rs4662751	C	T	2698.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:104,128:0.55:232
chr2	128401091	rs2244507	A	G	5031.77	.	AC=1;AF=0.500;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	0/1:211,244:0.54:455
chr2	128407499	rs2243805	G	A	1322.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:66,62:0.48:128
chr2	128407771	rs1820971	C	T	212.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:15,10:0.40:25
chr2	128409337	rs35201354	GC	CA	7223.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;JOINED;set=Intersection	GT:AD:AF:DP	0/1:113,182:0.62:295
chr2	128411934	rs6707277	A	G	4131.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr2	128411950	rs6707282	A	G	4569.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr2	128421829	rs79110686	G	A	668.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:11,31:0.74:42
chr2	128431188	rs6430942	A	G	2142.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:94,104:0.53:198
chr2	128431476	rs6755288	G	T	1267.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:55,50:0.48:105
chr2	128459039	rs1048211	A	G	869.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:26,40:0.61:66
chr2	128459214	rs10206957	C	G	489.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:26,23:0.47:49
chr2	128474887	rs3771293	C	T	1162.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:39,53:0.58:92
chr2	128526579	.	T	TTAAATAAA	955.73	.	AC=1;AF=0.500;AN=2;DP=72;set=Intersection	GT:AD:AF:DP	0/1:15,27:0.64:42
chr2	128608271	rs34858843	GA	G	1545.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.003;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=7.115;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.42;ReadPosRankSum=2.375;SOR=0.918;set=HC	GT:AD:AF:DP	0/1:22,44:0.67:66
chr2	128608290	rs6713679	T	C	1608.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:20,41:0.67:61
chr2	128608384	rs34706819	G	T	215.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:16,13:0.45:29
chr2	128610719	rs35614229	T	C	966.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:44,40:0.48:84
chr2	128699833	rs1370229	C	T	1548.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:60,59:0.50:119
chr2	128703217	.	AT	A	400.73	.	AC=1;AF=0.500;AN=2;DP=61;set=Intersection	GT:AD:AF:DP	0/1:34,21:0.38:55
chr2	128708063	rs2461463	T	C	2276.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr2	128744580	rs2948068	A	G	5478.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr2	128753854	rs1550174	T	C	6253.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr2	128757804	rs10928793	C	T	2235.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:107,102:0.49:209
chr2	128770731	.	G	GA	96.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.662;ClippingRankSum=0.000;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.42;ReadPosRankSum=0.499;SOR=0.489;set=HC	GT:AD:AF:DP	0/1:29,11:0.28:40
chr2	128772310	rs35312230	C	T	2008.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:95,96:0.50:191
chr2	128849114	rs4476299	T	C	7776.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr2	128854948	.	C	CA	77.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.971;ClippingRankSum=0.000;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.904;QD=0.58;ReadPosRankSum=-1.167;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:109,25:0.19:134
chr2	128860835	rs7355336	A	G	2263.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr2	128870808	rs4662775	T	C	6310.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr2	128874061	rs10210598	G	A	1876.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr2	128877837	rs4662593	G	C	2686.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr2	128878014	rs4662594	G	A	16123.77	.	AC=2;AF=1.00;AN=2;DB;DP=620;set=Intersection	GT:AD:AF:DP	1/1:0,603:1.00:603
chr2	128878667	rs6430990	T	C	1655.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr2	128878979	rs10636999	C	CTT	645.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.013;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.91;ReadPosRankSum=1.348;SOR=0.924;set=HC	GT:AD:AF:DP	0/1:12,38:0.76:50
chr2	128879022	rs6430991	G	C	1098.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr2	128880899	rs4480941	T	A	1022.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr2	128880993	rs4633871	A	G	103.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr2	128890878	rs34066685	T	TG	11903.73	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr2	129075961	rs61732881	T	C	3257.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr2	130737578	rs4233601	G	A	679.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:56,33:0.37:89
chr2	130738163	rs144773989	G	A	6890.77	.	AC=1;AF=0.500;AN=2;DB;DP=607;set=Intersection	GT:AD:AF:DP	0/1:281,323:0.53:604
chr2	130750107	.	C	CCGGCGG	121.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.260;ClippingRankSum=-0.000;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=49.09;MQRankSum=0.601;QD=12.17;ReadPosRankSum=-1.345;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:5,5:0.50:10
chr2	130750446	rs199529770	C	A	952.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.875;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=4.197;MLEAC=1;MLEAF=0.500;MQ=47.58;MQRankSum=-0.074;QD=11.62;ReadPosRankSum=0.117;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:35,47:0.57:82
chr2	130897055	rs28751929	G	A	203.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:34,13:0.28:47
chr2	130897218	rs13006246	T	C	1519.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:52,74:0.59:126
chr2	130915892	.	C	CT	119.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.660;ClippingRankSum=0.000;DP=185;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.78;MQRankSum=0.000;QD=0.81;ReadPosRankSum=0.364;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:117,30:0.20:147
chr2	130941065	rs6737226	T	C	6405.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr2	130948314	rs142246044	G	GT	234.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.992;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=1.252;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.132;QD=5.73;ReadPosRankSum=1.537;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:23,18:0.44:41
chr2	130949411	rs10208844	G	T	8361.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=52.13;QD=28.25;SOR=0.982;set=HC	GT:AD:AF:DP	1/1:0,296:1.00:296
chr2	130951548	rs1052319	G	A	14372.77	.	AC=2;AF=1.00;AN=2;DB;DP=516;set=Intersection	GT:AD:AF:DP	1/1:0,508:1.00:508
chr2	130951566	rs7340193	G	A	13917.77	.	AC=2;AF=1.00;AN=2;DB;DP=539;set=Intersection	GT:AD:AF:DP	1/1:0,528:1.00:528
chr2	131097247	rs55684765	G	A	12274.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.001;ClippingRankSum=0.000;DB;DP=615;ExcessHet=3.0103;FS=1.094;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.99;ReadPosRankSum=-0.311;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:296,318:0.52:614
chr2	131097253	rs56017827	G	C	12478.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.281;ClippingRankSum=0.000;DB;DP=618;ExcessHet=3.0103;FS=1.746;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.22;ReadPosRankSum=-0.768;SOR=0.848;set=HC	GT:AD:AF:DP	0/1:292,325:0.53:617
chr2	131100496	rs11542416	G	A	3991.77	.	AC=1;AF=0.500;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	0/1:238,196:0.45:434
chr2	131100734	rs11542411	G	A	1786.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:84,83:0.50:167
chr2	131334386	.	G	A	151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.124;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=39.68;MQRankSum=1.205;QD=3.10;ReadPosRankSum=0.319;SOR=0.073;set=HC	GT:AD:AF:DP	0/1:39,10:0.20:49
chr2	131487673	rs272128	A	C	15768.77	.	AC=2;AF=1.00;AN=2;DB;DP=591;set=Intersection	GT:AD:AF:DP	1/1:0,581:1.00:581
chr2	131520663	rs1905235	T	C	19799.77	.	AC=2;AF=1.00;AN=2;DB;DP=725;MQ=60.01;set=Intersection	GT:AD:AF:DP	1/1:0,709:1.00:709
chr2	131672950	rs12464119	A	G	7305.77	.	AC=1;AF=0.500;AN=2;DB;DP=734;set=Intersection	GT:AD:AF:DP	0/1:389,334:0.46:723
chr2	131673316	rs3739129	C	T	6926.77	.	AC=1;AF=0.500;AN=2;DB;DP=612;set=Intersection	GT:AD:AF:DP	0/1:289,316:0.52:605
chr2	131673702	rs62178867	G	A	1740.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:82,76:0.48:158
chr2	131674285	rs3739127	A	G	3944.77	.	AC=1;AF=0.500;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	0/1:227,197:0.46:424
chr2	131688587	rs6718816	G	A	2366.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:104,111:0.52:215
chr2	131688783	rs61750360	G	A	3243.77	.	AC=1;AF=0.500;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	0/1:177,169:0.49:346
chr2	131703968	rs67022442	G	C	658.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:25,29:0.54:54
chr2	131769237	rs13023338	G	A	2994.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr2	131798737	rs2241460	C	G	6824.77	.	AC=1;AF=0.500;AN=2;DB;DP=672;set=Intersection	GT:AD:AF:DP	0/1:362,299:0.45:661
chr2	131799563	rs2241461	C	T	1303.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:70,64:0.48:134
chr2	131800943	rs2288189	G	C	1651.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:56,69:0.55:125
chr2	131802045	rs10928515	C	T	2800.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:162,139:0.46:301
chr2	131805984	rs11541220	G	T	478.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:28,23:0.45:51
chr2	131812738	rs3814391	C	T	1389.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:51,65:0.56:116
chr2	131829560	rs34094232	A	ACACC	2736.73	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:77,73:0.49:150
chr2	131888361	.	A	AT	64.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.540;ClippingRankSum=0.000;DP=310;ExcessHet=3.0103;FS=0.772;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.000;QD=0.29;ReadPosRankSum=0.797;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:184,40:0.18:224
chr2	131888424	rs3762570	C	G	1345.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:40,55:0.58:95
chr2	132110828	rs373666409	G	T	103.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=25.76;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr2	132110862	rs370398581	G	C	30.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=15.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr2	132111121	rs11895354	G	A	1411.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.94;QD=45.54;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	132111123	rs370814343	T	C	1493.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.94;QD=46.68;SOR=0.957;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	132111127	rs13410274	G	T	1358.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.75;QD=42.46;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	132111166	.	G	GCC	1648.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.20;QD=41.22;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr2	132111167	.	G	C	802	.	AC=2;AF=1.00;AN=2;BRF=0.66;FR=1.0000;HP=1;HapScore=1;MGOF=35;MMLQ=24;MQ=43.82;NF=18;NR=20;PP=802;QD=22.020295067;SC=GCCGCCGCCGGCGCTGGCCTC;SbPval=0.55;Source=Platypus;TC=38;TCF=18;TCR=20;TR=38;WE=132111175;WS=132111143;set=Platypus	GT:AD:AF:DP	1/1:0,38:1.00:38
chr2	132111167	.	G	GCCGCCGCCGC	1578.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.96;QD=42.67;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr2	132120501	rs146351322	C	CT	7868.73	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:1,314:1.00:315
chr2	132121350	rs371054387	G	C	480.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.73;QD=28.28;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	132200568	rs62176150	C	T	4266.77	.	AC=1;AF=0.500;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	0/1:181,200:0.52:381
chr2	132201395	rs146766088	TG	AA	4014.77	.	AC=1;AF=0.500;AN=2;DB;DP=384;JOINED;set=Intersection	GT:AD:AF:DP	0/1:191,185:0.49:376
chr2	132201942	rs72859867	T	C	4439.77	.	AC=1;AF=0.500;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	0/1:146,191:0.57:337
chr2	132238410	rs11884621	T	C	2878.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:104,124:0.54:228
chr2	132248584	rs10182785	T	C	9665.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:0,341:1.00:341
chr2	132249372	rs6706952	C	T	481.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	132273988	rs199565961	GC	G	1949.73	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:80,56:0.41:136
chr2	132273994	rs372388255	T	G	1958.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:78,54:0.41:132
chr2	132285564	.	G	A	712.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.594;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=41.46;MQRankSum=0.297;QD=15.84;ReadPosRankSum=-2.258;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:18,27:0.60:45
chr2	132491544	rs7599401	C	G	5829.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr2	132494182	rs11690978	G	C	1818.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:122,95:0.44:217
chr2	132494272	rs4850248	A	G	2040.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;MQ=53.05;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr2	132558335	rs12992187	G	T	916.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:24,36:0.60:60
chr2	133014491	.	C	T	806.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.472;ClippingRankSum=0.000;DP=369;ExcessHet=3.0103;FS=15.215;MLEAC=1;MLEAF=0.500;MQ=57.21;MQRankSum=-8.302;QD=2.25;ReadPosRankSum=3.412;SOR=1.848;set=HC	GT:AD:AF:DP	0/1:316,43:0.12:359
chr2	133014497	.	G	C	4958.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.149;ClippingRankSum=0.000;DP=434;ExcessHet=3.0103;FS=4.834;MLEAC=1;MLEAF=0.500;MQ=57.06;MQRankSum=1.503;QD=11.72;ReadPosRankSum=-1.409;SOR=1.098;set=HC	GT:AD:AF:DP	0/1:286,137:0.32:423
chr2	133014504	rs79813268	G	T	5077.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.397;ClippingRankSum=0.000;DB;DP=481;ExcessHet=3.0103;FS=4.755;MLEAC=1;MLEAF=0.500;MQ=56.96;MQRankSum=1.804;QD=10.83;ReadPosRankSum=-0.952;SOR=1.076;set=HC	GT:AD:AF:DP	0/1:317,152:0.32:469
chr2	133014510	rs9287404	T	C	10005.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.570;ClippingRankSum=0.000;DB;DP=532;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.05;MQRankSum=-9.136;QD=19.39;ReadPosRankSum=0.351;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:240,276:0.53:516
chr2	133014602	rs75245503	G	C	27357.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.845;ClippingRankSum=0.000;DB;DP=1281;ExcessHet=3.0103;FS=1.745;MLEAC=1;MLEAF=0.500;MQ=58.60;MQRankSum=-13.079;QD=21.42;ReadPosRankSum=0.654;SOR=0.832;set=HC	GT:AD:AF:DP	0/1:591,686:0.54:1277
chr2	133014612	rs74853538	A	C	28706.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.153;ClippingRankSum=0.000;DB;DP=1342;ExcessHet=3.0103;FS=2.453;MLEAC=1;MLEAF=0.500;MQ=58.73;MQRankSum=-12.569;QD=21.44;ReadPosRankSum=0.229;SOR=0.852;set=HC	GT:AD:AF:DP	0/1:602,737:0.55:1339
chr2	133014619	rs78327226	C	T	3470.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.500;ClippingRankSum=0.000;DB;DP=1385;ExcessHet=3.0103;FS=5.712;MLEAC=1;MLEAF=0.500;MQ=58.80;MQRankSum=-19.340;QD=2.51;ReadPosRankSum=-5.434;SOR=1.333;set=HC	GT:AD:AF:DP	0/1:1218,164:0.12:1382
chr2	133014640	rs78867621	C	T	6604.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.914;ClippingRankSum=0.000;DB;DP=1435;ExcessHet=3.0103;FS=3.565;MLEAC=1;MLEAF=0.500;MQ=58.88;MQRankSum=-19.523;QD=4.62;ReadPosRankSum=-3.255;SOR=1.100;set=HC	GT:AD:AF:DP	0/1:1188,241:0.17:1429
chr2	133014651	rs111708138	A	AC	28493.73	.	AC=1;AF=0.500;AN=2;DB;DP=1400;set=Intersection	GT:AD:AF:DP	0/1:538,834:0.61:1372
chr2	133014657	rs113237573	G	A	7480.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.034;ClippingRankSum=0.000;DB;DP=1444;ExcessHet=3.0103;FS=1.404;MLEAC=1;MLEAF=0.500;MQ=59.11;MQRankSum=-18.061;QD=5.21;ReadPosRankSum=1.071;SOR=0.893;set=HC	GT:AD:AF:DP	0/1:1147,290:0.20:1437
chr2	133014678	rs72869462	A	G	32297.77	.	AC=1;AF=0.500;AN=2;DB;DP=1389;set=Intersection	GT:AD:AF:DP	0/1:515,867:0.63:1382
chr2	133014703	rs72869464	T	C	31787.77	.	AC=1;AF=0.500;AN=2;DB;DP=1216;set=Intersection	GT:AD:AF:DP	0/1:431,778:0.64:1209
chr2	133014721	rs72869465	T	C	29349.77	.	AC=1;AF=0.500;AN=2;DB;DP=1126;set=Intersection	GT:AD:AF:DP	0/1:385,734:0.66:1119
chr2	133014751	rs75204936	T	C	8851.77	.	AC=1;AF=0.500;AN=2;DB;DP=839;set=Intersection	GT:AD:AF:DP	0/1:548,283:0.34:831
chr2	133014776	rs72869466	CA	TG	8325.77	.	AC=1;AF=0.500;AN=2;DB;DP=663;JOINED;set=Intersection	GT:AD:AF:DP	0/1:432,226:0.34:658
chr2	133014786	rs72869468	G	A	5035.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.743;ClippingRankSum=0.000;DB;DP=592;ExcessHet=3.0103;FS=2.091;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=-0.958;QD=8.56;ReadPosRankSum=-0.000;SOR=0.870;set=HC	GT:AD:AF:DP	0/1:421,167:0.28:588
chr2	133075726	rs2598810	A	G	5199.77	.	AC=1;AF=0.500;AN=2;DB;DP=531;set=Intersection	GT:AD:AF:DP	0/1:296,233:0.44:529
chr2	133075904	rs113311843	C	CA	8076.73	.	AC=1;AF=0.500;AN=2;DB;DP=730;set=Intersection	GT:AD:AF:DP	0/1:381,322:0.46:703
chr2	133402607	rs1131671	C	T	2033.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:87,91:0.51:178
chr2	133425912	rs2709533	C	T	7143.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr2	133426183	rs2709532	G	C	2380.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr2	133472385	rs11329925	CA	C	951.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.017;ClippingRankSum=0.000;DB;DP=229;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=1.222;QD=4.78;ReadPosRankSum=0.669;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:92,107:0.54:199
chr2	133489601	rs56284623	A	G	1982.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:87,92:0.51:179
chr2	133539460	rs6717116	A	T	766.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:44,32:0.42:76
chr2	133539566	rs6730282	G	A	3421.77	.	AC=1;AF=0.500;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	0/1:177,166:0.48:343
chr2	133540714	rs72847214	G	A	4439.77	.	AC=1;AF=0.500;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	0/1:201,198:0.50:399
chr2	133541444	rs12691829	T	C	3864.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.432;ClippingRankSum=0.000;DB;DP=203;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.13;ReadPosRankSum=0.091;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:101,101:0.50:202
chr2	133541454	rs12691830	A	G	3937.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.441;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=1.066;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.84;ReadPosRankSum=-0.191;SOR=0.601;set=HC	GT:AD:AF:DP	0/1:103,106:0.51:209
chr2	133541575	rs12611515	C	T	2022.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:103,94:0.48:197
chr2	133542014	rs12616282	T	C	5512.77	.	AC=1;AF=0.500;AN=2;DB;DP=485;set=Intersection	GT:AD:AF:DP	0/1:222,253:0.53:475
chr2	133542545	rs10191147	G	A	4828.77	.	AC=1;AF=0.500;AN=2;DB;DP=497;set=Intersection	GT:AD:AF:DP	0/1:263,229:0.47:492
chr2	133554288	rs1868076	A	G	4821.77	.	AC=1;AF=0.500;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	0/1:184,220:0.54:404
chr2	133683658	rs2577634	G	T	3045.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr2	134060719	rs7604084	T	C	6918.77	.	AC=1;AF=0.500;AN=2;DB;DP=826;set=Intersection	GT:AD:AF:DP	0/1:455,360:0.44:815
chr2	135076111	rs4954134	C	G	870.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	135096097	rs7598410	T	C	1515.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr2	135160755	rs3748900	G	A	2440.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:151,120:0.44:271
chr2	135214259	rs2289470	G	A	2182.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:139,107:0.43:246
chr2	135602601	rs6430545	T	A	633.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:49,30:0.38:79
chr2	135629927	rs12469941	C	T	777.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:36,37:0.51:73
chr2	135694379	rs1374289	C	T	1974.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:93,92:0.50:185
chr2	135703650	rs201814332	G	GT	333.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.392;ClippingRankSum=0.000;DB;DP=388;ExcessHet=3.0103;FS=3.249;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=2.115;QD=0.89;ReadPosRankSum=1.672;SOR=0.932;set=HC	GT:AD:AF:DP	0/1:300,73:0.20:373
chr2	135705558	rs1979033	G	A	683.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:23,28:0.55:51
chr2	135710322	rs10166142	A	G	1356.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:100,69:0.41:169
chr2	135711516	rs3814355	C	T	5068.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.100;ClippingRankSum=0.000;DB;DP=504;ExcessHet=3.0103;FS=1.752;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.34;ReadPosRankSum=0.797;SOR=0.546;set=HC	GT:AD:AF:DP	0/1:247,243:0.50:490
chr2	135711657	rs3814354	G	A	7172.77	.	AC=1;AF=0.500;AN=2;DB;DP=751;set=Intersection	GT:AD:AF:DP	0/1:394,349:0.47:743
chr2	136070923	rs368770114	CA	C	178.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.289;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=1.586;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=1.521;QD=2.93;ReadPosRankSum=0.646;SOR=0.378;set=HC	GT:AD:AF:DP	0/1:35,26:0.43:61
chr2	136467164	rs2304367	C	A	5624.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr2	136527443	rs113881162	G	GTGAT	8914.73	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr2	136545844	rs1042712	C	G	2060.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr2	136546110	rs2278544	A	G	1280.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr2	136548169	rs892716	A	G	676.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	136548192	rs1808756	G	A	997.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	136555659	rs2322659	T	C	11803.77	.	AC=2;AF=1.00;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	1/1:0,433:1.00:433
chr2	136558157	rs748841	C	T	1078.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr2	136561557	rs2304371	G	A	6111.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr2	136565028	rs10928549	C	G	3196.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr2	136569848	rs12988076	C	A	2954.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr2	136575199	rs6719488	G	T	22357.77	.	AC=2;AF=1.00;AN=2;DB;DP=834;set=Intersection	GT:AD:AF:DP	1/1:2,815:1.00:817
chr2	136575534	rs4954449	T	C	10702.77	.	AC=2;AF=1.00;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	1/1:0,402:1.00:402
chr2	136594158	rs2236783	G	A	11122.77	.	AC=2;AF=1.00;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	1/1:0,404:1.00:404
chr2	136610598	rs4988226	A	G	1656.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr2	136614255	rs309180	G	A	5285.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:1,194:0.99:195
chr2	136622825	rs309177	A	G	5857.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.63;SOR=1.689;set=HC	GT:AD:AF:DP	1/1:0,212:1.00:212
chr2	136873549	rs2680880	A	T	2021.73	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:111,110:0.50:221
chr2	137639616	rs1465612	C	T	2130.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr2	137640006	rs11298935	CT	C	305.73	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:18,20:0.53:38
chr2	137814477	rs17727482	C	G	3543.77	.	AC=1;AF=0.500;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	0/1:216,175:0.45:391
chr2	137999979	rs10490735	G	C	1053.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:68,53:0.44:121
chr2	138000226	rs7605259	T	C	6345.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr2	138030271	rs10182152	G	A	1155.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:68,53:0.44:121
chr2	138163391	rs1551281	T	C	3275.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr2	138169158	rs1463285	T	C	5869.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr2	138208631	rs1453302	G	T	1319.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:53,54:0.50:107
chr2	138237038	rs1584435	C	T	2251.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr2	138378351	rs58339575	AG	A	1240.73	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:55,39:0.41:94
chr2	138378388	rs1448922	A	G	477.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:35,23:0.40:58
chr2	138420996	rs10206850	A	G	1969.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:94,94:0.50:188
chr2	138721942	rs10578652	AT	A	127.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.779;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.78;ReadPosRankSum=0.261;SOR=1.044;set=HC	GT:AD:AF:DP	0/1:28,18:0.39:46
chr2	138738760	rs3791242	T	C	1767.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:57,76:0.57:133
chr2	139045438	.	GTT	G	189.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.908;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.50;MQRankSum=-4.134;QD=3.95;ReadPosRankSum=-0.042;SOR=0.356;set=HC	GT:AD:AF:DP	0/1:32,16:0.33:48
chr2	139045444	rs11900034	T	A	256.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.071;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.21;MQRankSum=3.274;QD=5.14;ReadPosRankSum=1.030;SOR=1.673;set=HC	GT:AD:AF:DP	0/1:25,25:0.50:50
chr2	139045445	rs11900035	T	A	2011.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.21;QD=39.45;SOR=5.610;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr2	139045972	rs6733578	T	C	16018.77	.	AC=2;AF=1.00;AN=2;DB;DP=585;set=Intersection	GT:AD:AF:DP	1/1:0,569:1.00:569
chr2	139046301	rs12691943	A	G	24652.77	.	AC=2;AF=1.00;AN=2;DB;DP=941;set=Intersection	GT:AD:AF:DP	1/1:2,936:1.00:938
chr2	139046385	rs13382964	G	A	10878.77	.	AC=2;AF=1.00;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	1/1:1,387:1.00:388
chr2	139308397	rs148464901	T	TTCTCTC	585.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.994;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=2.774;MLEAC=1;MLEAF=0.500;MQ=60.96;MQRankSum=2.278;QD=13.95;ReadPosRankSum=0.521;SOR=0.346;set=HC	GT:AD:AF:DP	0/1:24,18:0.43:42
chr2	139316934	rs11903991	G	T	808.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:45,41:0.48:86
chr2	139429068	rs10803570	G	A	7451.77	.	AC=1;AF=0.500;AN=2;DB;DP=666;set=Intersection	GT:AD:AF:DP	0/1:316,345:0.52:661
chr2	140992340	rs13021861	A	T	5135.77	.	AC=1;AF=0.500;AN=2;DB;DP=566;set=Intersection	GT:AD:AF:DP	0/1:302,261:0.46:563
chr2	141004529	rs2129483	A	G	1275.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr2	141026986	rs12477489	G	A	6387.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:2,230:0.99:232
chr2	141031883	rs62171599	A	G	484.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:22,20:0.48:42
chr2	141199904	rs1878741	C	T	516.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:26,21:0.45:47
chr2	141202369	rs11902052	G	C	382.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:8,16:0.67:24
chr2	141259283	rs35296183	G	A	3752.77	.	AC=1;AF=0.500;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	0/1:234,179:0.43:413
chr2	141259376	rs35164907	G	A	7333.77	.	AC=1;AF=0.500;AN=2;DB;DP=794;set=Intersection	GT:AD:AF:DP	0/1:421,366:0.47:787
chr2	141260507	rs4450541	T	C	3114.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:145,140:0.49:285
chr2	141260668	rs4444457	A	G	6744.77	.	AC=1;AF=0.500;AN=2;DB;DP=662;set=Intersection	GT:AD:AF:DP	0/1:327,327:0.50:654
chr2	141260754	rs76928339	G	A	1968.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:69,74:0.52:143
chr2	141267744	rs1948051	T	C	529.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr2	141274576	rs4954672	T	C	4210.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr2	141283603	rs1352047	T	G	4866.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr2	141284041	rs7562323	A	G	1227.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr2	141291664	.	C	A	3670.77	.	AC=1;AF=0.500;AN=2;DP=360;set=Intersection	GT:AD:AF:DP	0/1:182,175:0.49:357
chr2	141298467	rs6729619	A	C	1875.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:61,78:0.56:139
chr2	141298674	rs13013854	T	C	8304.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.687;ClippingRankSum=0.000;DB;DP=435;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.22;ReadPosRankSum=-0.452;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:207,225:0.52:432
chr2	141298682	rs11694934	G	C	7795.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.708;ClippingRankSum=0.000;DB;DP=391;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.09;ReadPosRankSum=-0.575;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:188,200:0.52:388
chr2	141298749	rs11694970	G	C	1086.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:62,44:0.42:106
chr2	141299317	rs9287535	A	G	1897.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:90,87:0.49:177
chr2	141356125	rs114367995	T	C	569.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:30,23:0.43:53
chr2	141473409	rs10716305	CA	C	619.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:8,19:0.70:27
chr2	141473505	rs4954852	A	T	1374.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:64,61:0.49:125
chr2	141474402	rs5834770	G	GA	5087.73	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:5,219:0.98:224
chr2	141474456	rs1372255	C	T	1112.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:41,45:0.52:86
chr2	141527013	rs13002947	A	G	3029.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr2	141528592	rs7599219	T	C	6016.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr2	141533662	rs996361	T	C	2405.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr2	141571329	rs3749010	T	C	7657.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:1,296:1.00:297
chr2	141571440	rs17575847	C	G	2313.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr2	141571456	rs60071104	G	GA	1110.73	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:1,47:0.98:48
chr2	141571480	rs17575875	A	G	1018.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	141598473	rs35745624	A	AT	12068.73	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr2	141625834	rs34488899	TA	T	391.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.916;ClippingRankSum=0.000;DB;DP=322;ExcessHet=3.0103;FS=3.165;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.80;ReadPosRankSum=-0.946;SOR=0.989;set=HC	GT:AD:AF:DP	0/1:150,68:0.31:218
chr2	141707694	rs1980343	C	T	439.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	141709419	rs1429348	T	G	8086.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr2	141747249	rs1429365	A	T	3046.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:157,143:0.48:300
chr2	141747293	rs1429366	T	C	1693.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:92,71:0.44:163
chr2	141751461	rs11678316	C	T	984.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:32,39:0.55:71
chr2	141751592	rs13007735	G	A	5330.77	.	AC=1;AF=0.500;AN=2;DB;DP=559;set=Intersection	GT:AD:AF:DP	0/1:289,262:0.48:551
chr2	141762830	rs13413663	C	T	1619.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:85,71:0.46:156
chr2	141771058	rs3791766	T	A	851.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:22,34:0.61:56
chr2	141812617	rs75389026	C	T	685.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:46,31:0.40:77
chr2	141816621	rs1525579	A	G	1280.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr2	141945949	rs1249434	C	T	4358.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr2	142012027	rs431809	G	T	810.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:70,40:0.36:110
chr2	142012301	rs373757	T	C	333.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:11,16:0.59:27
chr2	142237868	rs4264514	G	A	845.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:50,37:0.43:87
chr2	142356614	.	TCCCCCCCG	T	749.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.876;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=32.60;ReadPosRankSum=1.159;SOR=3.912;set=HC	GT:AD:AF:DP	0/1:2,21:0.91:23
chr2	142356633	.	C	T	366.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.758;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.65;ReadPosRankSum=3.232;SOR=1.688;set=HC	GT:AD:AF:DP	0/1:9,20:0.69:29
chr2	142567738	rs28529494	G	T	1816.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.869;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=28.39;ReadPosRankSum=1.970;SOR=1.949;set=HC	GT:AD:AF:DP	1/1:1,63:0.98:64
chr2	142888376	rs1375610	G	C	3283.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:126,155:0.55:281
chr2	143685122	rs3768849	T	C	1347.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:47,62:0.57:109
chr2	143713700	rs351674	T	A	1040.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr2	143718459	rs3069632	T	TAAA,TAAAA	4052.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.19;QD=35.24;SOR=2.935;set=HC	GT:AD:AF:DP	1/2:2,49,64:0.43,0.56:115
chr2	143746494	rs10496935	C	G	1532.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:97,76:0.44:173
chr2	143787069	rs41269813	C	T	380.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:17,16:0.48:33
chr2	143787274	rs6430000	C	T	2088.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr2	143798189	rs9013	A	G	3856.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:166,183:0.52:349
chr2	143913004	rs2580857	T	G	4455.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr2	143959863	rs62171700	C	T	1147.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:87,56:0.39:143
chr2	143959892	rs34183792	C	T	1112.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:59,53:0.47:112
chr2	143973860	rs1451805	G	A	268.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:9,14:0.61:23
chr2	143986002	rs12691671	T	C	358.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:27,17:0.39:44
chr2	144007986	rs6430017	T	C	1444.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:79,67:0.46:146
chr2	144193151	rs11438710	C	CTT	283.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.785;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=11.927;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.46;ReadPosRankSum=0.242;SOR=1.307;set=HC	GT:AD:AF:DP	0/1:28,24:0.46:52
chr2	144193452	rs16822546	G	A	77.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:14,5:0.26:19
chr2	144194447	rs6755050	T	C	454.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:21,21:0.50:42
chr2	144194565	rs17230746	C	T	1576.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:65,75:0.54:140
chr2	144899559	rs3731958	C	A	7254.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr2	144934655	rs5834992	A	AG	1468.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr2	144934819	rs5834993	T	TA,TAA	883.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.230;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=1.615;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=16.07;ReadPosRankSum=-1.999;SOR=0.815;set=HC	GT:AD:AF:DP	1/2:7,31,17:0.56,0.31:55
chr2	145161712	rs200879835	CAG	C	36.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.365;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.40;ReadPosRankSum=0.958;SOR=0.515;set=HC	GT:AD:AF:DP	0/1:83,9:0.10:92
chr2	145255210	rs12691693	T	C	7643.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr2	145255399	.	TATATATATATATGTCATTCTCAACATATATATATATATGTCATTCTCAAC	T	345.73	.	AC=2;AF=1.00;AN=2;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.16;QD=49.39;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	148701099	rs66919703	GA	G	109.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.406;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=3.128;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=1.255;QD=3.23;ReadPosRankSum=0.701;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:20,14:0.41:34
chr2	149240657	rs5835195	GT	G	1968.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.460;ClippingRankSum=0.000;DB;DP=199;ExcessHet=3.0103;FS=3.752;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=0.810;QD=10.58;ReadPosRankSum=0.725;SOR=0.407;set=HC	GT:AD:AF:DP	0/1:34,152:0.82:186
chr2	149449185	rs6724787	G	A	10464.77	.	AC=2;AF=1.00;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	1/1:0,392:1.00:392
chr2	149520214	rs10193313	C	A	293.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	149853960	rs6738277	A	G	1439.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr2	150320627	rs34341723	TA	T	703.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.312;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=1.355;MLEAC=1;MLEAF=0.500;MQ=60.88;MQRankSum=1.406;QD=10.35;ReadPosRankSum=0.921;SOR=1.078;set=HC	GT:AD:AF:DP	0/1:17,51:0.75:68
chr2	150427516	rs4500908	C	T	639.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	150428849	rs10650419	C	CAAAAAAAAAA	1328.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=45.82;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	150432377	rs12232959	C	G	859.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	150432469	rs10932467	G	T	174.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	150432976	rs11545261	C	T	2215.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr2	150433128	rs11680630	C	G	820.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	150443689	rs4667420	C	G	5429.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:3,200:0.99:203
chr2	150443813	rs4667419	C	T	3393.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr2	151328284	rs11338446	GA	G	2239.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.168;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=6.930;MLEAC=2;MLEAF=1.000;MQ=60.06;MQRankSum=0.397;QD=14.36;ReadPosRankSum=0.252;SOR=0.245;set=HC	GT:AD:AF:DP	1/1:18,138:0.88:156
chr2	151343978	.	G	GA	284.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.073;ClippingRankSum=0.000;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.11;MQRankSum=0.000;QD=4.91;ReadPosRankSum=1.840;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:34,24:0.41:58
chr2	151857799	rs6709096	A	T	3008.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr2	151900223	rs7589036	T	C	12893.77	.	AC=2;AF=1.00;AN=2;DB;DP=489;set=Intersection	GT:AD:AF:DP	1/1:0,481:1.00:481
chr2	151900390	rs150701043	TAAAAACAAAAAC	T	3779.73	.	AC=2;AF=1.00;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.00;SOR=5.186;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr2	152108261	rs4665119	T	G	925.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr2	152109159	rs289885	C	T	784.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	152117957	rs2271813	T	C	2708.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr2	152267672	rs7585604	G	A	207.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	152273503	rs6735771	G	A	445.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.46;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	152293320	.	CT	C	79.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.231;ClippingRankSum=0.000;DP=100;ExcessHet=3.0103;FS=3.895;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.83;ReadPosRankSum=0.333;SOR=0.317;set=HC	GT:AD:AF:DP	0/1:73,23:0.24:96
chr2	152298562	rs138147981	T	TTTTTATTTTA	377.74	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	152303171	rs2432941	G	A	1460.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr2	152311570	rs2444263	G	A	7250.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr2	152311612	rs61750444	A	G	5885.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr2	152314385	rs16830047	G	A	3583.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr2	152314547	rs35044903	C	CA	401.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	152315549	rs2444260	G	T	608.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	152318713	rs59316798	TATC	T	817.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	152320118	rs2123465	G	A	4305.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr2	152322095	rs2444257	A	T	6042.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr2	152331418	rs1065177	C	G	1266.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr2	152342481	rs16830090	A	G	3257.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr2	152349026	rs2288195	G	A	994.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	152350462	rs4664455	T	C	3006.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:1,108:0.99:109
chr2	152352843	rs7575451	C	G	7906.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:2,302:0.99:304
chr2	152359276	rs201290038	AT	A	50.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.278;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=1.470;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=2.614;QD=0.75;ReadPosRankSum=-0.324;SOR=1.127;set=HC	GT:AD:AF:DP	0/1:52,16:0.24:68
chr2	152360136	rs3835058	AT	A	144.77	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	152369117	rs13023600	T	C	2637.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr2	152369397	rs142314464	C	CAACA	2566.73	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:1,59:0.98:60
chr2	152372907	rs77279207	A	G	1450.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr2	152375650	rs144875348	AAGTGAGAT	A	2407.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr2	152382759	rs61730765	T	C	3040.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:1,112:0.99:113
chr2	152383300	rs80293781	A	G	940.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr2	152383913	rs2288198	T	C	1447.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr2	152389991	rs114218081	A	G	9084.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,328:1.00:328
chr2	152396726	rs66541369	T	TA	1393.73	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:1,56:0.98:57
chr2	152402515	rs10687343	T	TAA,TAAA	1939.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.801;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=2.582;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.17;MQRankSum=0.000;QD=25.52;ReadPosRankSum=-0.592;SOR=1.235;set=HC	GT:AD:AF:DP	1/2:3,46,27:0.61,0.36:76
chr2	152403014	rs4664486	C	T	3897.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:1,150:0.99:151
chr2	152404294	rs2288201	C	T	1184.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	152409296	rs11894996	G	A	7612.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr2	152409416	rs2288203	C	T	2325.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:2,84:0.98:86
chr2	152410695	rs11884800	A	G	966.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	152417472	rs76261031	G	T	317.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	152422076	rs2288210	C	G	6866.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr2	152424933	rs3214503	T	TA	322.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.670;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=3.096;MLEAC=1;MLEAF=0.500;MQ=60.39;MQRankSum=0.000;QD=12.41;ReadPosRankSum=-0.703;SOR=2.049;set=HC	GT:AD:AF:DP	0/1:6,20:0.77:26
chr2	152425306	rs79849542	G	T	1641.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:1,62:0.98:63
chr2	152427249	rs7568873	A	G	1540.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr2	152490458	rs6710212	A	G	5052.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:1,191:0.99:192
chr2	152527572	rs7426114	C	T	9277.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	1/1:0,349:1.00:349
chr2	152531077	rs6711382	A	G	6768.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:1,248:1.00:249
chr2	152536498	rs6735208	T	A	3735.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr2	152552062	rs6433569	A	C	10540.77	.	AC=2;AF=1.00;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	1/1:0,394:1.00:394
chr2	152566433	rs12464543	A	G	1730.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr2	152573902	rs34733773	A	AGGC	4975.73	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:2,189:0.99:191
chr2	152573981	rs4611637	A	G	7437.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr2	152581866	rs4300824	T	C	9119.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:0,337:1.00:337
chr2	152584153	rs4664499	A	C	996.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr2	152684704	rs150910136	A	AC	3363.73	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:54,147:0.73:201
chr2	152725790	rs143110116	CAG	C	231.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.669;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.40;ReadPosRankSum=0.472;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:145,20:0.12:165
chr2	152729138	rs770609	T	C	870.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:1,28:0.97:29
chr2	152827973	rs7567588	A	G	2556.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr2	152828281	rs7607341	C	G	2313.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr2	153192324	rs2003332	C	T	1752.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr2	153405594	rs1155779	G	A	1570.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:2,60:0.97:62
chr2	153415170	rs6705427	A	C	1398.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr2	153415234	rs200953857	T	TG	6186.73	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr2	153415244	rs72868279	T	C	6518.73	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr2	153415376	rs6434098	T	G	6912.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr2	153417325	rs6713836	A	G	1485.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr2	153435288	rs12693407	G	A	275.78	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	153463984	.	T	TAC	272.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.129;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.04;ReadPosRankSum=2.285;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:4,13:0.76:17
chr2	153476066	rs5835439	G	GCCA	2169.73	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr2	153478931	rs7609122	T	C	1471.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr2	153481943	rs2346532	T	C	2109.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr2	153483257	rs7604573	T	C	2796.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr2	153484685	rs3811570	G	A	279.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	153492910	rs1561267	G	T	1864.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr2	153493986	rs16831465	G	T	3480.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr2	153497168	rs1465818	C	T	295.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	153504552	rs12693429	G	A	3696.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:1,130:0.99:131
chr2	153514583	rs6713779	G	C	849.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	153519524	rs1036526	A	G	1946.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr2	153520782	rs3762507	A	G	763.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	153520819	rs3762506	C	A	537.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	153529361	rs2304559	T	C	425.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.05;SOR=2.179;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	153535670	rs10166987	C	T	1441.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr2	153549814	rs10172024	G	C	4894.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr2	153572438	rs2346548	C	T	2043.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr2	153576548	.	G	GTCAGTCTTAAATGATTGGCTGCCAATGTTTCATTTCTTTATCATTCCCCTCCCCCCTTTTTTACCCTTTTTTGAATGTGCATGGAATGTAAATTA	5813.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.555;ClippingRankSum=0.000;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.08;MQRankSum=0.114;QD=55.37;ReadPosRankSum=0.000;SOR=0.849;set=HC	GT:AD:AF:DP	1/1:1,104:0.99:105
chr2	153576580	.	A	ATTTC	2702	.	AC=1;AF=0.500;AN=2;BRF=0.61;FR=0.5000;HP=3;HapScore=1;MGOF=32;MMLQ=28;MQ=59.5;NF=1;NR=49;PP=2702;QD=20;SC=CCAATGTTTCATTTATCATTC;SbPval=0.91;Source=Platypus;TC=79;TCF=4;TCR=75;TR=50;WE=153576588;WS=153576570;set=Platypus	GT:AD:AF:DP	0/1:29,50:0.63:79
chr2	153577013	rs9646744	G	A	6536.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr2	153591741	rs16831719	T	C	1178.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	154800874	rs4318348	A	G	1367.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr2	155306884	rs201440806	A	AT	2542.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr2	155306885	rs697648	C	T	2551.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr2	155711357	rs17642086	T	C	8659.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:2,335:0.99:337
chr2	157183211	rs35479735	TC	T	3062.73	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr2	157189011	rs834836	G	C	2812.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr2	157427593	rs1469652	T	C	654.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	157467040	rs11892929	A	G	694.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr2	157467106	rs11894134	T	C	1783.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:2,67:0.97:69
chr2	158157361	rs3214040	C	T	4039.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr2	158162475	rs3214039	C	T	1217.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr2	158162521	rs3816595	T	G	656.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	158165004	rs6728956	C	T	627.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	158184121	rs143310506	A	C	1379.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr2	158275111	.	TA	T	357.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.161;ClippingRankSum=0.000;DP=75;ExcessHet=3.0103;FS=1.151;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.15;ReadPosRankSum=1.444;SOR=0.499;set=HC	GT:AD:AF:DP	0/1:19,31:0.62:50
chr2	158283710	rs155614	A	G	377.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	158284056	rs155613	C	T	396.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	158291107	rs70987792	T	TAG	182.73	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:5,7:0.58:12
chr2	158291188	rs11904180	A	C	760.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	158291361	.	T	TCACACACA	233	.	AC=1;AF=0.500;AN=2;BRF=0.67;FR=0.5000;HP=2;HapScore=2;MGOF=39;MMLQ=26;MQ=52.9;NF=0;NR=5;PP=233;QD=47.2;SC=TCTCTCTCTCTCACACACACA;SbPval=1.0;Source=Platypus;TC=9;TCF=0;TCR=9;TR=5;WE=158291369;WS=158291351;set=Platypus	GT:AD:AF:DP	0/1:4,5:0.56:9
chr2	158395079	rs7576514	C	G	6032.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr2	158400908	rs6728987	C	T	3458.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr2	158401137	rs10432556	T	C	2731.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr2	158626980	rs1146031	C	T	4638.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr2	158636910	rs2227861	G	A	5948.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr2	158637137	rs1866885	A	G	860.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.727;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=3.968;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.20;ReadPosRankSum=0.896;SOR=1.116;set=HC	GT:AD:AF:DP	0/1:39,66:0.63:105
chr2	158655883	rs111834201	C	CAA,CAAA	983.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=32.79;SOR=1.536;set=HC	GT:AD:AF:DP	1/2:0,19,11:0.63,0.37:30
chr2	158851803	rs13414112	G	C	2977.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr2	158978178	rs10804389	C	G	2439.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr2	158991412	rs202089280	C	T	2522.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr2	159028800	rs2222390	A	G	609.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	159077019	rs958671	A	C	1806.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.75;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr2	159166069	rs7559772	T	C	2781.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr2	159312733	rs1111212	C	T	1382.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr2	159434492	rs2356188	G	A	583.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=48.65;SOR=2.670;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	159434500	rs2356189	A	G	613.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.92;SOR=2.448;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	159520085	rs3771679	G	C	307.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	159522879	rs2248854	C	G	431.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	159530651	rs2711034	A	T	1375.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr2	159534863	rs2356505	A	G	515.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	159534874	rs2356506	C	T	828.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	159534889	rs2711040	C	T	1068.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	159661077	rs2271663	C	T	747.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:1,26:0.96:27
chr2	159663599	rs9869	T	C	4494.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr2	159672168	rs1515922	G	A	4979.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:1,182:0.99:183
chr2	159672252	rs61740878	G	A	8468.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:5,324:0.98:329
chr2	159672442	rs10016	G	A	2198.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr2	159992572	rs35935932	C	T	402.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	160005600	rs72951453	G	A	882.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	160019863	rs12466551	A	G	3451.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr2	160032843	rs72951482	A	T	455.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.49;SOR=2.049;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	160033174	rs759034	A	G	140.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr2	160034919	rs4665031	A	G	1432.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	160035207	rs6748288	T	C	9495.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:0,358:1.00:358
chr2	160055448	rs13430891	T	A	2186.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr2	160073895	rs4665042	G	C	1500.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:1,51:0.98:52
chr2	160075886	rs146371641	G	GC	8573.73	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr2	160076026	rs2303334	C	G	2127.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr2	160076077	rs2303335	T	A	1851.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr2	160082354	rs12692544	C	T	5900.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.368;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=40.14;ReadPosRankSum=0.467;SOR=1.139;set=HC	GT:AD:AF:DP	1/1:4,143:0.97:147
chr2	160082364	rs34344829	A	G	5638.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.319;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=42.08;ReadPosRankSum=0.523;SOR=1.170;set=HC	GT:AD:AF:DP	1/1:4,130:0.97:134
chr2	160082384	rs13419975	T	A	2716.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:2,98:0.98:100
chr2	160084224	rs2042494	G	A	1544.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr2	160084263	rs2042495	A	G	2197.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr2	160084534	rs2288111	A	G	140.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr2	160085506	rs72955954	A	G	2522.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr2	160087535	rs3821301	T	G	4489.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr2	160112881	rs7591849	G	T	3032.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr2	160114437	rs3213715	G	A	1672.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr2	160116281	rs4665052	A	G	2055.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr2	160132196	rs35620648	A	AC	1378.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr2	160136337	rs174264	G	A	1895.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr2	160176943	rs174229	A	C	1330.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr2	160203934	rs965163	A	C	1190.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr2	160231108	rs6742788	A	G	924.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	160239378	rs2302927	A	G	1149.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr2	160241936	rs1469015	A	G	345.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	160243183	rs918351	TA	AT	3078.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr2	160261729	rs74694096	AC	A	626.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.69;QD=34.82;SOR=1.493;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	160285060	rs57144725	C	T	1249.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr2	160285575	rs12473781	C	T	544.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	160285660	rs10754963	T	A	1314.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.78;SOR=0.813;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr2	160295297	rs2302923	C	A	776.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr2	160304741	rs12470533	A	T	1607.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr2	160585740	rs3821299	C	A	497.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	160604812	rs1427329	C	T	5532.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr2	160605268	rs1365803	T	C	3588.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr2	160621354	rs5835760	G	GT	328.25	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:4,21:0.84:25
chr2	160634564	rs5835761	ACC	A	182.87	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr2	160634582	rs148276105	TAATATC	T	143	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr2	160637324	rs2303551	A	G	4505.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr2	160639970	rs2114626	T	C	2152.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr2	160654524	rs2556106	G	T	54.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr2	160663678	rs7566887	T	C	1801.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr2	160691978	rs2303548	G	A	3449.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr2	160707075	rs41264207	C	T	1137.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr2	160708609	rs2162499	C	T	792.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	160708645	rs2162500	C	G	1307.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.82;SOR=1.132;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr2	160708923	rs36091128	GT	G	221.75	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.72;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	160708933	rs72158678	GT	G	221.75	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.72;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	160710922	rs2729705	T	C	3541.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr2	160711556	rs975490	T	G	3838.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr2	160714990	rs41264213	A	G	2378.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr2	160729005	rs1397706	C	T	6674.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:1,247:1.00:248
chr2	160729134	rs1397705	A	C	3122.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:1,107:0.99:108
chr2	160737495	rs2729712	A	C	414.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	160737560	rs2729711	G	T	2018.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr2	160742862	rs2271383	G	A	2187.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr2	160761082	rs6760195	T	G	2284.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr2	160805993	rs6726923	C	G	961.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr2	160807742	rs952184	A	T	926.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	160813249	rs3749113	G	A	997.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	160833188	rs2715918	A	G	1394.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.76;QD=25.83;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr2	160840370	rs5835784	AC	A	369.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	160843623	rs6757188	T	C	2202.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr2	160872982	rs34121457	A	AG	513.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.391;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.71;ReadPosRankSum=-1.320;SOR=2.910;set=HC	GT:AD:AF:DP	0/1:5,24:0.83:29
chr2	160872991	rs34555459	T	G	1453.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr2	160873021	rs2715939	G	A	2495.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.754;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.84;ReadPosRankSum=1.491;SOR=1.219;set=HC	GT:AD:AF:DP	1/1:1,92:0.99:93
chr2	160873270	rs2667040	A	G	1790.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr2	160873294	rs3833577	T	TA	875.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr2	160876827	rs1511213	A	G	780.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	160919040	rs11285500	AC	A	1344.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr2	160958349	rs34330288	GA	G	642.76	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.030;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.20;MQRankSum=0.447;QD=13.68;ReadPosRankSum=0.598;SOR=0.724;set=HC	GT:AD:AF:DP	1/1:5,42:0.89:47
chr2	160994197	rs55841905	C	T	6227.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:2,230:0.99:232
chr2	161030537	.	A	C	2015.77	.	AC=2;AF=1.00;AN=2;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr2	161797329	rs1524626	C	T	1156.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr2	161797513	rs1524625	A	G	5114.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:2,193:0.99:195
chr2	162175290	rs1116165	T	C	2842.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr2	162224193	rs58162668	G	GT	3616.73	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr2	162247772	rs1921674	C	T	747.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.71;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	162274607	.	A	ATGTGTG,ATGTG	577.90	.	AC=1,0;AF=0.500,0.00;AN=2;DP=30;set=Intersection	GT:AF:DP	0/1:0.77:22
chr2	162280748	rs890076	G	A	3233.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.17;SOR=1.349;set=HC	GT:AD:AF:DP	1/1:0,119:1.00:119
chr2	162730312	rs35292746	T	C	435.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	162757676	rs6754546	A	G	264.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	162873188	rs2970931	T	C	154.81	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	162877041	.	C	CA	99.86	.	AC=2;AF=1.00;AN=2;DP=11;set=Intersection	GT:AD:AF:DP	1/1:3,8:0.73:11
chr2	162890175	rs1558957	T	C	1306.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr2	162891848	rs6432708	C	T	3656.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr2	162930286	rs3216773	CGCCAGGGTCCTAGCAGAA	C	4125.73	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr2	163051415	rs1468916	C	T	453.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	163128824	rs3747517	T	C	4235.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr2	163208893	rs17783344	T	G	1919.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr2	164466039	rs3833554	AT	A	1657.73	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:3,84:0.97:87
chr2	165358655	rs7584035	T	A	474.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	165358672	rs4667463	A	G	709.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	165364887	rs8192674	G	A	2255.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr2	165378427	rs13015232	C	A	263.89	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:1,10:0.91:11
chr2	165383686	.	AATATATATATATATATAT	A,AAT	326.73	.	AC=2,0;AF=1.00,0.00;AN=2;DP=16;set=Intersection	GT:AF:DP	1/1:0.90:10
chr2	165476253	rs61748245	A	T	8161.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr2	165477903	rs62173895	G	C	660.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr2	165544450	rs6738627	G	A	480.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	165551404	rs17244632	G	A	5056.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr2	165557318	rs6712203	C	T	868.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	165560236	rs17185198	A	G	1670.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr2	165578581	rs6414069	A	G	5249.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:2,203:0.99:205
chr2	165584407	rs12692743	C	T	1008.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr2	165630460	rs355865	T	C	605.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr2	165657066	rs62173958	T	C	2307.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr2	165657096	rs62173959	G	C	1793.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr2	165657142	rs7588491	A	C	1108.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr2	165698715	rs71028447	A	AG	1066.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	165809138	rs10544528	ATG	A	1334.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.22;QD=31.78;SOR=3.855;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr2	165811554	.	GAA	G	1583.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.534;ClippingRankSum=0.000;DP=83;ExcessHet=3.0103;FS=3.472;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=0.377;QD=20.30;ReadPosRankSum=1.028;SOR=2.252;set=HC	GT:AD:AF:DP	1/1:18,60:0.77:78
chr2	165987772	rs62174900	T	G	4086.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:2,155:0.99:157
chr2	165988022	rs78280506	C	A	560.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.04;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr2	165996107	rs1946892	T	A	4670.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:1,175:0.99:176
chr2	166003479	rs16850131	G	A	9223.77	.	AC=2;AF=1.00;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	1/1:0,344:1.00:344
chr2	166003573	rs58539679	C	T	3086.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr2	166164215	rs3214603	CA	C	407.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr2	166179779	rs141815642	T	C	9916.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:2,377:0.99:379
chr2	166221582	rs3769951	C	T	1118.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.02;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr2	166229922	rs6432821	T	C	636.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr2	166245230	rs2060198	T	A	6781.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:1,240:1.00:241
chr2	166514165	rs12620509	C	G	2027.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr2	166514594	rs10803800	A	G	136.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	166621354	rs2113840	T	C	1368.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr2	166758447	rs111488473	TA	T	54.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.693;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.000;QD=0.57;ReadPosRankSum=0.727;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:77,19:0.20:96
chr2	166770120	rs10176588	A	G	1674.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr2	166771663	rs7590559	C	T	636.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	166773971	rs6750044	G	A	643.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	166781242	rs58208220	T	TA	1300.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr2	166788336	rs7592429	T	C	3709.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr2	166799596	rs13000534	T	C	757.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr2	166799893	rs10930190	G	A	2886.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr2	166802306	rs5836067	ACTGT	A	997.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	166810161	.	G	GCCCGCTCA	7723.73	.	AC=2;AF=1.00;AN=2;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr2	166810373	rs1347041	A	G	1765.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr2	166810433	rs5836068	GT	G	771.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr2	166892444	rs34673057	TAAA	T	1198.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.81;SOR=2.147;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	166892448	rs114707732	A	T	1208.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.17;SOR=2.147;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	166892788	rs2298771	C	T	2614.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr2	166893081	rs7601520	G	A	1183.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr2	166894165	rs67819222	C	CT	551.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:1,27:0.96:28
chr2	166894230	rs2020318	T	C	2462.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr2	166895819	rs10168027	A	G	339.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	166895913	rs201455607	CTTT	C,CT	1262.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.19;QD=22.96;SOR=1.127;set=HC	GT:AD:AF:DP	1/2:8,20,27:0.36,0.49:55
chr2	166896143	rs2126152	T	G	1259.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr2	166897864	rs6432860	A	G	2801.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:2,110:0.98:112
chr2	166897989	rs11394960	G	GA	238.27	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.200;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=2.817;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.53;ReadPosRankSum=-1.822;SOR=0.153;set=HC	GT:AD:AF:DP	0/1:6,19:0.76:25
chr2	166898017	rs10198801	G	T	504.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	166900606	rs6753355	A	C	1360.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr2	166903188	rs538921	A	C	3171.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr2	166903228	rs6432861	C	T	4812.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr2	166903445	rs7580482	T	C	7271.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr2	166904346	rs1461193	G	A	3665.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr2	166905375	rs1542484	A	G	2005.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr2	166905480	rs994399	G	A	1603.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr2	166905572	rs1542483	T	A	268.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	166909544	rs3812718	C	T	5907.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr2	166909559	rs3812719	C	A	4841.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr2	166915335	rs10930201	C	A	394.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	166930214	rs566839	T	A	1165.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr2	167137270	rs75236447	A	T	522.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	167162277	rs4429487	G	A	9295.77	.	AC=2;AF=1.00;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	1/1:0,348:1.00:348
chr2	167163043	rs9646771	T	C	3989.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:2,153:0.99:155
chr2	167163199	rs9646772	A	T	1137.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr2	167163372	rs4583483	T	C	926.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.13;SOR=1.931;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	167163372	.	TC	CA	704	.	AC=2;AF=1.00;AN=2;BRF=0.33;FR=1.0000;HP=2;HapScore=1;MGOF=1;MMLQ=28;MQ=60.0;NF=11;NR=3;PP=704;QD=54.1048482044;SC=CCAGAGTCTTTCAAGGTGCAA;SbPval=0.66;Source=Platypus;TC=17;TCF=13;TCR=4;TR=14;WE=167163381;WS=167163362;set=Platypus	GT:AD:AF:DP	1/1:3,14:0.82:17
chr2	167163373	rs4443015	C	A	926.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.13;SOR=1.931;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	167163663	rs4447616	C	T	519.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr2	167168093	rs6432901	C	T	2771.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr2	167313313	rs138641247	AAT	A	64.80	.	AC=1;AF=0.500;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	0/1:1,4:0.80:5
chr2	167759948	rs7599152	C	T	1522.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr2	167760451	rs5836125	AG	A	1813.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr2	168067447	rs78303843	C	T	838.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	168812218	rs74969437	C	T	1407.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr2	168986154	rs925846	A	G	3642.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr2	168997340	rs146202774	A	T	1244.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	169103796	.	C	CGCCGGG	209.70	.	AC=1;AF=0.500;AN=2;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=26.21;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:2,6:0.75:8
chr2	169439286	rs7583332	A	C	2002.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr2	169674655	rs830026	T	C	745.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.43;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	169674663	rs830025	A	T	802.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.25;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	169674764	rs830024	C	G	743.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	169681278	rs11374385	T	TTTTGTTTGTTTG	2418.73	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.87;QD=43.19;SOR=2.564;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr2	169690729	rs522893	T	C	3971.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr2	169707428	rs540652	C	T	7231.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:1,270:1.00:271
chr2	169707552	rs488621	A	G	5673.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:2,215:0.99:217
chr2	169712115	rs58938408	C	CA	239.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.105;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.62;ReadPosRankSum=-1.054;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:4,15:0.79:19
chr2	169713084	rs11385898	T	TA	2278.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.432;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=1.138;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=16.39;ReadPosRankSum=-0.994;SOR=0.565;set=HC	GT:AD:AF:DP	1/1:15,124:0.89:139
chr2	169717541	rs2632372	T	C	2446.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr2	169721377	rs479661	G	A	4187.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr2	169727879	rs61598834	G	GA	914.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr2	169728069	.	GAAA	G	2707.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;ClippingRankSum=0.000;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.43;MQRankSum=0.301;QD=33.02;ReadPosRankSum=1.733;SOR=0.326;set=HC	GT:AD:AF:DP	1/1:1,81:0.99:82
chr2	169763148	rs560887	T	C	5542.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr2	169764176	rs492594	G	C	6545.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:2,246:0.99:248
chr2	169780366	rs579275	T	C	1350.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr2	169789016	rs497692	T	C	5013.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr2	169801488	rs853789	A	G	1347.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr2	169814347	rs853773	A	G	439.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	169814655	rs853772	G	T	1157.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr2	169994021	rs369228824	AAG	A	171.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.647;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=2.507;QD=1.53;ReadPosRankSum=0.467;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:92,20:0.18:112
chr2	169997051	rs990626	G	A	2172.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr2	170003432	rs4667591	T	G	5615.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr2	170010985	rs2075252	T	C	3836.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr2	170032989	rs2229265	C	T	7867.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:1,302:1.00:303
chr2	170050472	rs2075248	T	C	1490.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr2	170053505	rs2228171	C	T	2364.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr2	170053580	rs2302696	C	T	712.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	170055255	rs16823023	T	C	5375.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr2	170058497	rs16856600	G	A	643.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr2	170059190	rs2239599	T	C	2659.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr2	170129528	rs830994	G	A	5934.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr2	170129636	rs830995	A	G	3427.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr2	170134191	rs831003	G	C	1571.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr2	170139346	rs831010	C	T	4263.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr2	170139639	rs831011	A	G	1012.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr2	170145661	rs144147038	C	T	4036.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:2,158:0.99:160
chr2	170151227	rs10567789	TAA	T	236.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.167;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=10.212;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=15.78;ReadPosRankSum=1.105;SOR=2.038;set=HC	GT:AD:AF:DP	1/1:2,13:0.87:15
chr2	170218816	rs1559013	T	C	2340.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr2	170218847	rs1559014	C	G	3681.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr2	170336024	rs1879466	G	C	7134.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr2	170387132	.	G	GT	1999.73	.	AC=2;AF=1.00;AN=2;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr2	170394469	rs2290004	T	G	1245.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr2	170402707	rs2290009	T	C	1061.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr2	170411693	rs2683455	T	C	1315.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:1,50:0.98:51
chr2	170411776	rs114920384	T	C	1020.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:1,38:0.97:39
chr2	170413897	rs56157235	G	GA	540.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr2	170425508	.	CA	C	253.82	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.489;ClippingRankSum=-0.000;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.13;MQRankSum=-0.489;QD=31.73;ReadPosRankSum=0.887;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:1,7:0.88:8
chr2	170425523	rs2683446	A	C	502.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.447;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.29;MQRankSum=-0.288;QD=26.46;ReadPosRankSum=-0.640;SOR=0.622;set=HC	GT:AD:AF:DP	1/1:1,18:0.95:19
chr2	170465125	rs79028989	G	A	952.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:1,36:0.97:37
chr2	170492584	rs2290008	T	C	325.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.15;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	170592709	rs2288331	A	G	2981.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:1,109:0.99:110
chr2	170605981	rs4667607	C	T	2153.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr2	170606438	rs10611184	TATAC	T	1061.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr2	170606450	rs79825047	C	T	940.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	170606476	.	CAT	C	713	.	AC=2;AF=1.00;AN=2;BRF=0.04;FR=1.0000;HP=2;HapScore=1;MGOF=145;MMLQ=22;MQ=56.56;NF=3;NR=14;PP=713;QD=43.5294117647;SC=TATATGTATACATATATATGT;SbPval=0.59;Source=Platypus;TC=17;TCF=3;TCR=14;TR=17;WE=170606485;WS=170606466;set=Platypus	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	170606478	.	T	TATATGTGTATATATACGCATGTATGTATAC	682.73	.	AC=2;AF=1.00;AN=2;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.27;QD=48.77;SOR=2.985;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	170606496	rs144201291	C	CGCAT,CGTGT	277.77	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=7;set=Intersection	GT:AF:DP	1/1:1.00:7
chr2	170606588	.	A	G	202	.	AC=1;AF=0.500;AN=2;BRF=0.11;FR=0.5000;HP=2;HapScore=2;MGOF=177;MMLQ=24;MQ=55.67;NF=8;NR=1;PP=202;QD=26.3079125052;SC=ATATATACGTATGTATGTATA;SbPval=0.98;Source=Platypus;TC=13;TCF=8;TCR=5;TR=9;WE=170606596;WS=170606578;set=Platypus	GT:AD:AF:DP	0/1:4,9:0.69:13
chr2	170606609	.	TATAC	T	346	.	AC=1;AF=0.500;AN=2;BRF=0.17;FR=0.9988;HP=1;HapScore=3;MGOF=103;MMLQ=24;MQ=58.31;NF=6;NR=2;PP=346;QD=47.625;SC=CATATATGTGTATACATATAT;SbPval=0.8;Source=Platypus;TC=9;TCF=6;TCR=3;TR=8;WE=170606629;WS=170606599;set=Platypus	GT:AD:AF:DP	0/1:1,8:0.89:9
chr2	170606621	.	T	C	292	.	AC=2;AF=1.00;AN=2;BRF=0.17;FR=1.0000;HP=1;HapScore=3;MGOF=103;MMLQ=24;MQ=60.0;NF=9;NR=5;PP=292;QD=23.3408008962;SC=TACATATATATGTGTGTATAT;SbPval=0.58;Source=Platypus;TC=14;TCF=9;TCR=5;TR=14;WE=170606629;WS=170606599;set=Platypus	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	170606658	rs1469355	G	A	185.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	170606724	rs10164599	A	G	749.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	170632807	rs10930375	C	T	799.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr2	170632896	rs10930376	T	C	3276.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr2	170633103	rs11325477	GA	G	3345.73	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr2	170677837	rs59311986	AC	A	722.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr2	170678576	rs373745484	TA	T	54.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.823;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=8.011;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.46;ReadPosRankSum=-0.596;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:99,21:0.17:120
chr2	170684593	rs115491675	A	G	4495.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:1,164:0.99:165
chr2	170762487	rs10171268	C	T	3382.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr2	170762566	rs10194785	A	T	9748.77	.	AC=2;AF=1.00;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	1/1:2,366:0.99:368
chr2	170782037	rs1461958	C	T	533.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	170784004	rs6723655	T	C	1302.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr2	170784049	rs898851	G	A	616.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	170785484	rs10165565	G	A	642.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	170821010	rs10197085	A	G	4877.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr2	170850738	rs1461959	T	C	1240.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr2	170865588	rs10205516	G	T	133.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr2	170871950	rs16857446	T	G	251.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	170871976	rs13028230	A	G	150.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	170911950	rs6741614	T	C	3889.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr2	170917648	rs10203212	A	G	2135.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr2	170917983	rs35032863	CT	C	3012.73	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:18,180:0.91:198
chr2	170918048	.	G	T	2381.77	.	AC=2;AF=1.00;AN=2;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr2	170929880	rs10202446	G	A	2214.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr2	171034900	rs72882094	G	T	3436.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr2	171070785	rs72885631	T	G	1838.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	171070810	rs67994603	G	T	2499.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr2	171071369	rs4667626	C	T	3315.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:1,122:0.99:123
chr2	171073887	rs2161916	G	A	6723.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr2	171192084	rs12466203	G	A	3347.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr2	171248778	rs62170829	G	A	1579.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr2	171256912	.	CT	C	90.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.629;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=1.945;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.75;ReadPosRankSum=0.887;SOR=0.284;set=HC	GT:AD:AF:DP	0/1:18,15:0.45:33
chr2	171260708	rs10930425	C	A	2184.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr2	171260787	rs6736609	G	A	3794.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr2	171260820	rs6751520	T	C	4340.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr2	171261021	rs6751781	T	G	1157.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr2	171264091	rs138990294	T	TGCTCTGGATATGAAA	2288.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr2	171300575	rs17426211	C	A	2980.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr2	171300648	rs4667639	T	A	1566.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr2	171319997	rs12477518	A	C	4999.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:1,195:0.99:196
chr2	171355198	rs6761297	A	G	6258.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr2	171355329	rs6733198	G	C	2355.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr2	171356274	rs10185178	G	A	2246.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr2	171356423	rs9752383	T	C	321.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.81;SOR=5.136;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	171358211	rs7593940	G	A	3278.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr2	171358474	rs7608168	T	A	383.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	171400449	rs56181206	T	C	4691.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr2	171508490	rs10718459	CA	C	1370.73	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr2	171627497	.	GCCCCCGCCACCT	G	1095.73	.	AC=2;AF=1.00;AN=2;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.48;QD=42.14;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr2	171627676	rs1861462	T	G	6193.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr2	171632385	rs10626619	C	CTT	2527.73	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr2	171654663	rs2287111	A	C	1227.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr2	171678379	rs2241165	C	T	1137.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr2	171678625	rs769404	T	C	7733.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr2	171705157	rs35403424	AT	A	1798.73	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:9,100:0.92:109
chr2	171786169	rs2676158	A	G	248.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	171786239	rs3770442	C	T	767.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	171793357	rs35123411	C	A	581.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	171818289	rs2557804	G	A	9732.77	.	AC=2;AF=1.00;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	1/1:0,360:1.00:360
chr2	171822466	rs4668356	C	T	19185.77	.	AC=2;AF=1.00;AN=2;DB;DP=740;set=Intersection	GT:AD:AF:DP	1/1:1,725:1.00:726
chr2	171851048	rs11397597	C	CA	626.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.645;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.06;ReadPosRankSum=-0.216;SOR=1.236;set=HC	GT:AD:AF:DP	0/1:8,40:0.83:48
chr2	171906469	rs3217296	GA	G	4992.73	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr2	171910313	rs11553951	C	T	1593.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr2	171913207	.	C	CA	61.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.41;ReadPosRankSum=0.503;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:8,6:0.43:14
chr2	171916664	rs2676130	A	T	1451.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr2	172016756	rs113416007	G	A	795.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	172180771	rs10205459	A	G	2335.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:1,90:0.99:91
chr2	172188368	rs13023973	C	T	1284.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr2	172193808	rs3731987	T	C	285.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	172216969	rs3731986	T	C	2008.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr2	172378657	rs884409	T	G	2531.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr2	172378818	rs868106	A	G	3927.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr2	172378889	rs2356782	C	G	1526.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr2	172379686	rs960750	G	A	3263.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr2	172379781	rs960749	G	A	8614.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,323:1.00:323
chr2	172379936	rs960748	G	A	2719.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr2	172398311	rs7586144	T	C	1243.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:2,42:0.95:44
chr2	172409790	rs143524630	TA	T	1629.73	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr2	172411273	rs10455	G	A	2514.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr2	172549248	rs6433311	A	G	219.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	172582281	rs139032813	A	ATTAC	1511.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	172582344	rs139881666	AAC	A	1310.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	172644229	rs2292813	T	C	4995.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr2	172709215	rs3770444	G	C	1675.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr2	172712480	rs2056202	T	C	5016.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr2	172725301	rs1878583	A	G	7551.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr2	172864845	rs6730085	C	A	2439.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr2	172865009	rs62183782	T	A	6193.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr2	172944748	rs58045367	G	A	575.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	172966250	rs2228184	T	C	3900.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr2	173429033	rs4972842	T	A	460.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	173429496	rs10531054	TTAGG	T	897.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	173435578	.	C	CT	173.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.039;ClippingRankSum=0.000;DP=184;ExcessHet=3.0103;FS=1.881;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=-0.835;QD=1.27;ReadPosRankSum=0.652;SOR=0.459;set=HC	GT:AD:AF:DP	0/1:107,30:0.22:137
chr2	173435658	rs141130222	CAG	C	1711.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr2	173600783	rs34574292	C	CG	5286.73	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr2	173659913	rs7585729	T	C	564.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	173848200	rs59582070	C	CT	1867.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.714;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=0.915;QD=10.80;ReadPosRankSum=-1.840;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:55,118:0.68:173
chr2	173861456	rs5010643	G	C	1541.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr2	173865976	rs3214814	G	GT	7321.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.501;ClippingRankSum=0.000;DB;DP=317;ExcessHet=3.0103;FS=4.023;MLEAC=2;MLEAF=1.000;MQ=60.10;MQRankSum=0.203;QD=23.85;ReadPosRankSum=-1.602;SOR=1.030;set=HC	GT:AD:AF:DP	1/1:5,302:0.98:307
chr2	173866203	rs2028934	C	T	3243.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr2	174068513	rs11899707	G	C	5030.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr2	174085844	.	CTT	C	2958.73	.	AC=2;AF=1.00;AN=2;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr2	174086285	rs74417392	C	T	1811.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr2	174104037	rs72436366	G	GA	30.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.091;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.54;ReadPosRankSum=-0.661;SOR=0.392;set=HC	GT:AD:AF:DP	0/1:12,8:0.40:20
chr2	174123399	rs820008	A	G	657.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr2	174223675	rs11675433	C	T	793.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	174223914	rs75662905	G	A	497.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	174228418	rs4972555	C	T	1136.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr2	174228744	rs1529887	T	C	1567.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr2	174230153	rs2288993	C	G	1813.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr2	174230983	rs35959156	G	GT	791.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.62;SOR=1.284;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr2	174943876	rs3754812	C	T	1067.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	175199869	rs56000618	G	T	10032.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	1/1:0,379:1.00:379
chr2	175200014	rs34372833	G	A	2275.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr2	175200903	rs35548534	G	C	8068.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:4,295:0.99:299
chr2	175223296	rs4972650	T	A	87.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.58;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr2	175244756	rs2358666	T	C	499.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr2	175263063	rs10497410	G	A	1028.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr2	175264627	rs59353951	CT	C	297.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.242;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=1.657;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.26;ReadPosRankSum=1.260;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:11,30:0.73:41
chr2	175318396	rs12614979	G	A	182.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	175318411	rs201863632	G	A	72.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.623;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.51;ReadPosRankSum=3.692;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:20,9:0.31:29
chr2	175326258	rs72910819	G	T	6594.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr2	175335076	rs2358637	G	T	1052.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	175431707	rs2163236	C	G	1442.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr2	175436940	rs4972450	G	A	3339.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr2	175439512	rs1367218	T	C	4313.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:1,161:0.99:162
chr2	175439536	rs12624277	G	A	5676.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:1,211:1.00:212
chr2	175439681	rs3049897	T	TA	817.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.208;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.19;ReadPosRankSum=0.231;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:31,58:0.65:89
chr2	175613165	rs2305413	G	C	2456.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr2	175613600	rs2646159	T	C	358.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	175614716	rs2229957	G	A	2729.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:1,103:0.99:104
chr2	175614908	rs139930312	CAA	C,CA	1159.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.267;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=1.288;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=12.61;ReadPosRankSum=2.345;SOR=1.075;set=HC	GT:AD:AF:DP	1/2:11,25,56:0.27,0.61:92
chr2	175622178	rs11327107	TG	T	995.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	175622788	rs2646164	G	A	2513.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr2	175622907	rs2600687	T	C	316.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	175677022	rs12613075	C	T	3477.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr2	175689249	.	G	GA	2086.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.365;ClippingRankSum=0.000;DP=171;ExcessHet=3.0103;FS=0.936;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=0.651;QD=14.59;ReadPosRankSum=-0.835;SOR=0.883;set=HC	GT:AD:AF:DP	0/1:22,121:0.85:143
chr2	175689342	.	CTA	C	145.73	.	AC=1;AF=0.500;AN=2;DP=54;set=Intersection	GT:AD:AF:DP	0/1:35,10:0.22:45
chr2	176001037	rs34875693	G	GA	514.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;MQ=60.45;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	176867131	rs747051	G	A	398.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	176945341	.	AAGCCGCGGCCGCCGCGCCTGAGGCTGC	A	773.73	.	AC=2;AF=1.00;AN=2;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	178085137	rs9068	G	A	1603.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr2	178540293	rs3770016	A	G	4838.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr2	178545660	.	G	GA	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.517;ClippingRankSum=0.000;DP=59;ExcessHet=3.0103;FS=3.275;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.59;ReadPosRankSum=-0.267;SOR=1.382;set=HC	GT:AD:AF:DP	0/1:45,9:0.17:54
chr2	178545713	rs4538242	C	T	1443.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr2	178561947	rs2886424	G	C	2047.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr2	178565815	rs10201180	T	C	2113.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr2	178681517	rs115662866	G	A	7800.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:1,287:1.00:288
chr2	178682764	rs111900976	A	AT	882.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	178764364	rs3037901	A	AAT,AATAT	579.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=29;set=Intersection	GT:AF:DP	1/1:1.00:17
chr2	178769992	rs2695096	T	C	1038.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr2	178936373	rs1435573	T	G	5172.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr2	178936614	rs6433711	C	T	9421.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:0,347:1.00:347
chr2	178977620	rs2276622	C	G	2312.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr2	178986130	rs200040728	TACACAC	T,TAC	1306.73	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;DB;DP=40;set=Intersection	GT:AF:DP	1/2:0.35,0.65:23
chr2	178986136	rs200763421	C	T	348.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:8,15:0.65:23
chr2	178986138	rs201783668	C	T	140.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.644;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.57;MQRankSum=-0.991;QD=6.12;ReadPosRankSum=0.453;SOR=0.250;set=HC	GT:AD:AF:DP	0/1:15,8:0.35:23
chr2	179203797	rs1434087	G	A	9692.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:0,350:1.00:350
chr2	179209056	rs140117736	G	A	6625.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr2	179247468	rs77450626	C	T	1952.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr2	179260382	rs2304340	A	G	1403.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:2,48:0.96:50
chr2	179325735	rs17304212	C	G	5451.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:1,192:0.99:193
chr2	179363807	rs3214536	A	AT	270.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	179363909	.	A	AT	121.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.735;ClippingRankSum=0.000;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=0.000;QD=1.52;ReadPosRankSum=0.145;SOR=0.831;set=HC	GT:AD:AF:DP	0/1:59,21:0.26:80
chr2	179366093	rs2303537	C	T	509.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	179407763	rs58609542	C	CT	179.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.705;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=13.958;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.28;ReadPosRankSum=-0.549;SOR=1.415;set=HC	GT:AD:AF:DP	0/1:106,34:0.24:140
chr2	179442292	rs148238009	TA	T	3288.73	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:1,162:0.99:163
chr2	179444768	rs4145333	C	G	9935.77	.	AC=2;AF=1.00;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	1/1:0,363:1.00:363
chr2	179482347	rs72677235	CTAAG	C	1056.80	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:1,26:0.96:27
chr2	179498042	rs6723526	T	C	7584.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:1,270:1.00:271
chr2	179511767	rs375648400	GTATA	G	180.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.851;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.63;ReadPosRankSum=-0.202;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:11,6:0.35:17
chr2	179518911	rs139167585	TAGC	T	6569.73	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr2	179548695	rs372078760	AT	A	78.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.196;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=1.438;QD=1.61;ReadPosRankSum=0.992;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:34,15:0.31:49
chr2	179566146	rs2251987	T	G	2115.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr2	179583317	rs72648978	G	A	3730.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:2,130:0.98:132
chr2	179585266	rs2562831	C	T	3385.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr2	179586816	.	T	A	10132.77	.	AC=2;AF=1.00;AN=2;DP=389;set=Intersection	GT:AD:AF:DP	1/1:2,381:0.99:383
chr2	179595577	.	G	GT	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.519;ClippingRankSum=0.000;DP=158;ExcessHet=3.0103;FS=7.748;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=2.236;QD=0.30;ReadPosRankSum=0.006;SOR=0.923;set=HC	GT:AD:AF:DP	0/1:116,22:0.16:138
chr2	179600563	rs2742348	G	A	8737.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr2	179613651	rs72648904	G	A	2339.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr2	179614952	rs10803917	A	G	6459.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr2	179615887	rs922984	T	C	2997.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr2	179615931	rs922985	C	G	2945.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr2	179615994	rs922986	T	C	4033.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr2	179616770	.	GAAA	G,GA	2365.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.32;QD=29.95;SOR=1.785;set=HC	GT:AD:AF:DP	1/2:3,62,14:0.78,0.18:79
chr2	179618019	rs3754953	T	A	215.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	179620951	rs7585334	C	T	5950.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr2	179621477	rs6433728	C	T	3870.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr2	179623758	rs2291310	C	T	7297.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr2	179623939	rs6705594	T	C	5069.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr2	179629363	rs4894043	T	C	3817.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr2	179629461	rs2291311	C	T	2057.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr2	179632710	rs2291313	T	C	9929.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:0,341:1.00:341
chr2	179633298	rs4471922	G	T	625.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	179634376	rs72125115	GTA	G	918.74	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:4,33:0.89:37
chr2	179635882	rs4894047	C	T	734.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	179638238	rs2291306	G	A	4489.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr2	179639297	rs3816781	C	T	521.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	179642425	rs719201	G	A	5752.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr2	179643886	rs2291302	A	G	2910.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr2	179643934	rs2291301	A	G	2990.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr2	179644035	rs1552280	G	A	3598.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr2	179644855	rs10497520	T	C	2330.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr2	179658175	rs72647851	C	T	8840.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	1/1:3,330:0.99:333
chr2	179702268	rs1032283	A	G	6500.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr2	179783696	rs12467323	C	A	1009.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	179809500	rs9677932	C	T	316.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	179825838	rs11303440	TG	T	1000.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr2	179826241	rs6725028	A	G	909.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	179980070	rs2044479	G	A	906.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	179982125	rs3217565	AAGAT	A	669.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	179986453	rs138198620	A	AT	1000.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:1,34:0.97:35
chr2	179988395	.	T	TAA	1043.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.844;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=2.900;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.69;ReadPosRankSum=1.809;SOR=1.893;set=HC	GT:AD:AF:DP	1/1:2,44:0.96:46
chr2	179989039	rs2289992	G	A	1868.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr2	179997177	rs3214766	AT	A	877.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr2	180039068	rs13013868	C	T	4601.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr2	180047908	rs6757681	T	C	3676.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:2,134:0.99:136
chr2	180383498	rs4567894	C	A	266.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	180725481	rs259816	T	C	2574.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr2	180810180	rs6433817	C	T	4772.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr2	180810264	rs6433818	A	T	8614.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr2	180815528	rs2304858	A	T	1878.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr2	180835589	rs4894140	A	G	3366.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:1,115:0.99:116
chr2	180835792	rs3768837	T	A	3277.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr2	180837722	rs6433820	T	C	808.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	180837806	rs6433821	T	A	2528.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr2	180843126	rs2367990	C	T	121.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr2	180846743	rs3738943	G	T	1379.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr2	182344846	rs11412304	G	GT	318.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.951;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.28;ReadPosRankSum=0.251;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:4,20:0.83:24
chr2	182350447	rs155102	A	G	558.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	182350743	rs155103	A	G	2761.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr2	182359592	rs16867434	T	C	579.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	182359613	rs165419	G	A	331.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	182374534	rs1143674	A	G	2403.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr2	182376546	rs1466109	T	G	2126.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr2	182387133	rs7602504	A	G	1235.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr2	182395345	rs1143676	G	A	8347.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr2	182399097	rs7562325	T	C	1930.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.74;SOR=0.719;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr2	182399497	rs11418738	A	ATT	1227.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.561;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=27.90;ReadPosRankSum=0.044;SOR=0.223;set=HC	GT:AD:AF:DP	1/1:1,43:0.98:44
chr2	182399638	rs2124443	A	G	631.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	182402790	rs6747500	G	A	168.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	182403792	rs57234957	A	AT	6779.73	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr2	182403851	rs10180793	G	A	8714.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;MQ=60.03;set=Intersection	GT:AD:AF:DP	1/1:0,323:1.00:323
chr2	182412633	rs139036113	G	GACACACACACAC,GACACACACACACAC	6253.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=202;set=Intersection	GT:AF:DP	1/2:0.18,0.82:138
chr2	182412723	rs34890422	C	CGT	1025.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr2	182413259	rs12997453	A	G	1013.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr2	182413602	rs13003064	A	T	3655.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr2	182430120	rs7604902	C	A	4523.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:2,168:0.99:170
chr2	182438716	rs10427195	A	G	430.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	182794534	rs1051085	G	A	299.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	182928555	rs1196161	G	C	6890.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr2	182981846	rs1882211	G	C	840.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr2	183066377	rs56413404	C	CAAAA,CAAAAA	2870.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.873;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=2.256;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.11;MQRankSum=0.334;QD=34.59;ReadPosRankSum=0.104;SOR=1.651;set=HC	GT:AD:AF:DP	1/2:4,26,53:0.31,0.64:83
chr2	183070619	rs1344773	A	T	1125.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr2	183070911	rs55747252	G	A	1037.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	183616592	rs3098359	C	T	3963.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr2	183793383	rs9333279	T	C	1292.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	183793398	rs9333280	A	G	1415.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr2	183799558	rs9288088	G	C	1484.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr2	183827018	rs2271671	G	A	2372.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr2	183851058	rs10185562	C	T	534.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	183988984	rs2705719	C	G	448.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	183995742	rs925803	A	C	1215.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr2	183998237	rs1980160	C	T	1765.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr2	185243700	rs12693375	C	T	183.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	185463815	rs147358574	C	CCT	7498.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.141;ClippingRankSum=0.000;DB;DP=284;ExcessHet=3.0103;FS=2.192;MLEAC=2;MLEAF=1.000;MQ=60.11;MQRankSum=0.389;QD=30.86;ReadPosRankSum=0.732;SOR=0.772;set=HC	GT:AD:AF:DP	1/1:18,225:0.93:243
chr2	185798504	rs4667000	A	C	3916.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:1,144:0.99:145
chr2	185800905	rs12476147	A	T	7259.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:2,264:0.99:266
chr2	185801747	rs4667001	G	A	4602.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.02;SOR=1.632;set=HC	GT:AD:AF:DP	1/1:0,107:1.00:107
chr2	185801755	rs4667002	A	G	4447.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.48;SOR=1.755;set=HC	GT:AD:AF:DP	1/1:0,100:1.00:100
chr2	185801917	rs728534	A	G	2065.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.10;SOR=0.904;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr2	185802211	rs5836928	C	CACA	4452.73	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr2	185802243	rs1366842	C	A	2933.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr2	185802363	rs12477430	A	G	3309.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr2	186610344	rs11884004	T	G	3310.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr2	186610388	rs17813736	G	A	2080.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr2	186611566	rs6758484	C	A	4840.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr2	186611938	rs12618129	G	A	527.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	186625670	rs10547921	TA	T	190.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.388;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=1.897;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.34;ReadPosRankSum=1.440;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:10,16:0.62:26
chr2	186625770	rs7562137	A	G	865.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	186627943	rs17228441	T	C	3091.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr2	186629349	rs1986166	G	A	1381.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr2	186654592	rs992822	A	G	3093.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr2	186655726	rs10931199	G	A	1598.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr2	186656657	rs10173807	C	T	3559.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr2	186656956	rs17229201	T	C	3578.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr2	186657089	rs17229222	C	A	2656.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr2	186658056	rs60029104	G	A	3009.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr2	186658438	rs10490391	C	T	4763.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;MQ=59.99;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr2	186658565	rs10490392	G	T	2583.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr2	186659359	rs2161036	G	T	2194.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:2,81:0.98:83
chr2	186661673	rs55938253	A	G	8303.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr2	186664473	rs11686997	T	C	1607.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr2	186664963	rs10931200	C	A	2649.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:1,97:0.99:98
chr2	186665432	rs36004074	G	A	2089.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr2	186665824	rs11695215	A	G	5513.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:4,207:0.98:211
chr2	186667121	rs7605884	T	C	3418.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr2	186670104	rs7576532	A	C	2952.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr2	186670780	rs16827154	T	A	1611.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr2	186670979	rs4666689	T	C	5690.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr2	186671357	rs17826534	G	A	2817.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr2	186671912	rs1862066	G	A	4529.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr2	186678241	rs34138386	A	AT	821.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	186678887	rs2161035	T	C	1310.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr2	186680041	rs2287606	G	T	574.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	186696759	rs2302913	C	T	297.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	186697876	rs1468999	A	G	7610.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:2,288:0.99:290
chr2	187364811	rs4144786	G	A	216.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	187364878	rs4144785	A	G	640.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:2,24:0.92:26
chr2	187455278	rs9333287	C	T	2212.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr2	187487160	rs9333288	G	A	4326.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr2	187490371	rs2197787	T	G	2170.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr2	187490389	rs28633327	G	T	1699.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.28;QD=45.94;SOR=5.136;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr2	187498254	rs4667107	T	C	457.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	187501682	rs56136540	G	A	3297.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr2	187503226	rs4667108	T	C	182.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	187505486	rs3816375	A	G	87.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr2	187529823	.	A	AT	788.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.771;ClippingRankSum=0.000;DP=108;ExcessHet=3.0103;FS=1.150;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=0.000;QD=8.57;ReadPosRankSum=0.906;SOR=0.465;set=HC	GT:AD:AF:DP	0/1:34,58:0.63:92
chr2	187532010	rs41265951	G	T	2054.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr2	187532417	rs2230616	G	A	4781.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr2	187558960	rs2276562	G	A	7350.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr2	187559047	rs144403657	G	GCAA	14686.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.015;ClippingRankSum=0.000;DB;DP=434;ExcessHet=3.0103;FS=1.194;MLEAC=2;MLEAF=1.000;MQ=62.61;MQRankSum=0.770;QD=36.63;ReadPosRankSum=1.328;SOR=0.905;set=HC	GT:AD:AF:DP	1/1:19,382:0.95:401
chr2	187611748	rs2247924	G	A	1625.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr2	187698037	rs7609183	G	A	677.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	187702339	rs72348328	GTA	G	62.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.150;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=15.69;ReadPosRankSum=1.150;SOR=0.916;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr2	188216807	rs858745	T	C	3518.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr2	188243633	rs3771084	A	G	445.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.22;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	188245640	rs1511877	G	A	523.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	188250301	rs698577	T	A	1754.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr2	188293545	rs113375998	G	A	135.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.05;QD=22.64;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	189434250	rs201778155	G	GT	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.53;MQRankSum=0.431;QD=6.13;ReadPosRankSum=-0.842;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chr2	189448896	rs2048138	A	T	1719.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr2	189849773	rs3106796	A	G	1423.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr2	189855674	rs2203601	T	A	626.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.12;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr2	189861031	rs141685938	T	TAC	230.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.447;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.90;MQRankSum=0.230;QD=20.98;ReadPosRankSum=-0.230;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:2,9:0.82:11
chr2	189862203	rs3134654	C	T	555.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr2	189866199	rs2271682	T	A	4396.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr2	189867205	rs3106801	G	A	1114.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	189875421	rs1516446	T	G	5871.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr2	189899541	rs4666770	T	C	1030.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	189899572	rs7420715	T	C	1719.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr2	189901295	rs12693526	G	A	951.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr2	189907937	rs6434312	A	G	1977.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr2	189918337	rs6750027	T	C	568.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	189918787	rs6738371	C	T	1589.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr2	189923104	rs7556733	A	G	4097.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr2	189923434	rs12989558	A	C	1325.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr2	189923630	rs5837121	AT	A	3675.75	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:39,236:0.86:275
chr2	189925313	rs6414121	G	C	414.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	189925548	rs6414122	T	A	3264.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr2	189927506	rs7424947	C	G	507.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr2	189932831	rs2229495	T	C	2947.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr2	189936687	rs6434317	T	G	1571.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr2	189943121	rs5837122	GA	G	397.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.285;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.30;ReadPosRankSum=1.265;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:2,24:0.92:26
chr2	189945717	.	C	A	2669.77	.	AC=2;AF=1.00;AN=2;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr2	189963501	rs148220961	G	A	2555.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr2	189974958	rs4128539	G	T	1373.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr2	189997838	rs62182417	G	A	214.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.69;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	189997840	.	CTTTT	C	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;ClippingRankSum=-0.000;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.18;ReadPosRankSum=1.383;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:2,2:0.50:4
chr2	190313396	rs6738193	A	G	1293.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr2	190319966	rs5837143	C	CA	734.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.523;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=4.313;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.70;ReadPosRankSum=1.327;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:5,39:0.89:44
chr2	190319990	rs1224958	A	G	2903.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr2	190322196	rs10497700	T	C	338.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	190323530	rs1157910	A	G	6033.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:2,235:0.99:237
chr2	190327076	rs2304703	C	T	393.90	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:1,15:0.94:16
chr2	190327126	rs2304702	C	G	1228.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr2	190443304	rs1439815	C	T	2858.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr2	190444630	rs1439816	C	G	5150.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr2	190445076	rs4287798	T	G	809.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr2	190448047	rs987028	T	C	6171.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr2	190448546	rs71946330	CACATAT	C	368.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:30,22:0.42:52
chr2	190448548	rs368151678	CATAT	C	604.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:22,30:0.58:52
chr2	190531426	rs1437880	G	A	5330.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr2	190541842	rs67184798	AT	A	200.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.100;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=0.612;QD=11.15;ReadPosRankSum=0.548;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:2,16:0.89:18
chr2	190570001	rs11319823	TA	T	672.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:1,34:0.97:35
chr2	190593311	rs1225087	C	G	1274.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr2	190595258	rs1225090	G	T	5484.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr2	190602513	rs1225099	T	C	1016.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr2	190603201	rs56352098	T	TA	577.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:1,27:0.96:28
chr2	190611084	rs13002216	T	C	348.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	190611414	rs2254166	T	C	4004.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr2	190611459	rs2254167	A	G	1736.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr2	190617643	rs2243876	A	G	4097.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr2	190636411	rs6942	C	G	801.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr2	190640475	rs3816196	A	G	1635.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr2	190643257	rs7591929	G	A	1106.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr2	190647108	rs10168387	T	C	2503.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr2	191159073	.	A	C	39.74	.	AC=2;AF=1.00;AN=2;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr2	191159232	rs188339	A	G	768.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	191161622	rs1058180	T	C	6865.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:2,269:0.99:271
chr2	191175639	rs36074132	GT	G	1487.73	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr2	191184475	rs291466	A	G	8816.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:0,342:1.00:342
chr2	191184524	rs3749022	C	T	5679.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr2	191301368	rs9646748	A	G	16382.77	.	AC=2;AF=1.00;AN=2;DB;DP=605;set=Intersection	GT:AD:AF:DP	1/1:4,591:0.99:595
chr2	191334424	rs10193212	G	A	257.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	191334459	rs145257711	A	ATTTTTAT	824.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.54;QD=45.82;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	191354658	rs59123011	C	CCT	2632.73	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr2	191373775	rs6707244	C	T	937.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	191374043	rs13429315	C	T	2123.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr2	191375375	rs6712426	G	A	1561.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr2	191383924	rs13395233	C	G	1013.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr2	191389853	rs74975456	T	C	1337.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr2	191390126	rs10931458	G	A	1118.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr2	191399378	rs13412879	C	G	3327.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:1,129:0.99:130
chr2	191399433	rs12693579	T	C	2338.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr2	191535311	rs2109957	T	C	1231.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr2	191537793	rs5837195	GT	G	321.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.517;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.43;ReadPosRankSum=1.418;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:22,28:0.56:50
chr2	191545821	rs12618075	A	G	2000.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:2,79:0.98:81
chr2	191552121	.	CAAA	C	2504.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.883;ClippingRankSum=0.000;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=1.072;QD=24.32;ReadPosRankSum=1.440;SOR=0.902;set=HC	GT:AD:AF:DP	1/1:8,95:0.92:103
chr2	191777768	rs11363248	AT	A	466.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr2	191839976	rs1914408	C	T	2353.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr2	191841759	rs2066804	G	A	3487.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr2	191843830	rs2280235	A	G	2652.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr2	191848312	rs12477076	T	C	2046.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr2	191904022	rs141331848	G	A	6621.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:2,250:0.99:252
chr2	191996518	rs1551443	T	C	4344.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:2,168:0.99:170
chr2	192160839	rs4853574	A	T	1390.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr2	192160875	rs4853575	C	T	1719.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr2	192161058	rs11397643	G	GT	396.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	192161103	rs10622945	A	ATTCT	412.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.27;SOR=4.804;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	192247808	rs34460997	A	G	114.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr2	192247836	rs4641883	C	T	216.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	192248174	.	T	A	69	.	AC=1;AF=0.500;AN=2;BRF=0.11;FR=0.5194;HP=5;HapScore=2;MGOF=115;MMLQ=25;MQ=60.0;NF=1;NR=5;PP=69;QD=17.2952020912;SC=TCACTGTTTTTTATATATATA;SbPval=0.6;Source=Platypus;TC=7;TCF=1;TCR=6;TR=6;WE=192248182;WS=192248164;set=Platypus	GT:AD:AF:DP	1/0:1,6:0.86:7
chr2	192250543	rs13000398	A	G	2744.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr2	192250568	rs13026888	T	C	3379.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr2	192250726	rs13018796	G	A	6735.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr2	192279327	rs2271767	T	C	7108.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr2	192711162	rs4471838	A	C	4627.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr2	192711385	rs35883486	G	A	6119.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:2,225:0.99:227
chr2	192820898	rs7606017	T	G	1200.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr2	193056737	rs3768702	C	A	2875.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:2,108:0.98:110
chr2	196582816	rs842736	T	C	870.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	196602614	rs147974774	G	GAAAT	3555.73	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:2,80:0.98:82
chr2	196673533	rs13411834	A	G	6504.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr2	196756535	rs11292337	GA	G	2339.73	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:6,123:0.95:129
chr2	196762491	.	T	TA	95.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.219;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=1.317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.65;ReadPosRankSum=0.989;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:41,17:0.29:58
chr2	196851911	rs10931715	G	A	2186.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr2	196866420	rs6434811	C	T	6127.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr2	196891449	rs1072600	T	C	915.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	196912067	rs4850381	A	G	1013.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.14;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr2	196915991	rs10174065	A	G	1386.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.67;SOR=1.036;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr2	196933188	rs13028754	T	C	936.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	196935811	rs12693777	T	C	2483.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.87;SOR=0.778;set=HC	GT:AD:AF:DP	1/1:0,96:1.00:96
chr2	197004439	rs1054537	A	G	1809.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr2	197008529	rs1568368	C	T	152.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	197010823	rs2271888	C	T	1307.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr2	197021141	rs6712829	G	A	781.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr2	197021276	rs10931726	T	C	5274.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr2	197021372	rs12478353	T	A	3381.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr2	197065889	rs3795921	A	G	1136.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr2	197065964	rs3820908	C	A	3477.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr2	197066175	rs4566380	T	G	793.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.314;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=8.300;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.05;ReadPosRankSum=0.602;SOR=2.471;set=HC	GT:AD:AF:DP	0/1:3,33:0.92:36
chr2	197106759	rs2045277	T	C	4191.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr2	197118729	rs4850690	C	T	3132.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr2	197122493	rs6731238	T	G	5588.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr2	197135806	rs4850693	T	C	331.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	197171104	rs6729640	G	A	584.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr2	197171175	rs4241189	C	T	2817.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.45;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr2	197171183	rs12468199	C	T	2925.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.03;SOR=1.352;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr2	197172816	rs2305567	G	A	951.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	197184321	rs1531111	C	T	4156.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr2	197504545	rs1879128	C	G	3551.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr2	197534692	rs7590083	C	T	2793.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr2	197584489	.	C	CA	799.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.989;ClippingRankSum=0.000;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=38.08;ReadPosRankSum=1.653;SOR=1.358;set=HC	GT:AD:AF:DP	1/1:1,20:0.95:21
chr2	197584504	rs2680970	C	T	855.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	197593787	rs2460436	C	T	655.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	197594203	rs2577580	G	C	2982.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:1,107:0.99:108
chr2	197595762	rs2680967	G	A	4499.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr2	197758148	rs332299	C	T	203.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	197762941	.	C	CA	104.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.528;ClippingRankSum=0.000;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.01;ReadPosRankSum=0.706;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:36,16:0.31:52
chr2	197777589	rs12693800	C	T	2774.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr2	197792148	rs11421690	A	AC	744.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.972;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=64.28;MQRankSum=0.925;QD=33.85;ReadPosRankSum=0.079;SOR=1.101;set=HC	GT:AD:AF:DP	1/1:1,21:0.95:22
chr2	197792152	rs10687155	A	AAC	805.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.864;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=64.54;MQRankSum=0.965;QD=35.03;ReadPosRankSum=0.905;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:1,22:0.96:23
chr2	197854233	rs144034091	T	TAC	491.73	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:5,15:0.75:20
chr2	197863004	rs77910925	A	G	1898.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr2	197863026	rs75547979	C	A	2372.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr2	197863698	rs17385301	G	A	2943.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr2	197863851	rs4850742	C	T	732.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr2	197864996	rs6434897	A	C	1186.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr2	197865275	rs16860307	T	C	2326.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr2	197872727	rs57048274	T	TTCTC	2570.73	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr2	197943382	rs139294990	ATG	A	387.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.105;ClippingRankSum=0.000;DB;DP=278;ExcessHet=3.0103;FS=0.710;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=2.594;QD=1.49;ReadPosRankSum=-0.505;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:226,34:0.13:260
chr2	197953372	rs146161383	TAAGTC	T	4677.73	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr2	197954780	rs4300850	A	G	6927.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr2	197986048	rs2697270	T	C	3569.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr2	197989945	rs2579395	T	C	713.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr2	197990909	rs2918628	G	A	1085.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr2	198001443	rs2579387	C	T	2192.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr2	198011904	rs2249470	G	A	5480.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr2	198175297	rs10931780	G	C	4694.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.23;SOR=1.009;set=HC	GT:AD:AF:DP	1/1:0,179:1.00:179
chr2	198266943	rs788019	C	T	962.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	198360213	.	A	AT	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.416;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=1.721;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.35;ReadPosRankSum=0.576;SOR=0.374;set=HC	GT:AD:AF:DP	0/1:18,7:0.28:25
chr2	198508951	rs10497806	G	A	5402.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr2	198509058	rs16866940	C	T	4350.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr2	198563742	rs6760078	A	T	87.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.76;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr2	198643529	.	TAC	T	132.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.537;ClippingRankSum=0.000;DP=58;ExcessHet=3.0103;FS=5.100;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=1.915;QD=2.37;ReadPosRankSum=-0.458;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:44,12:0.21:56
chr2	198643631	rs700655	G	A	4055.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr2	198669754	rs770659	G	C	1544.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr2	198669871	rs770658	G	C	562.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.14;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr2	198950240	rs1064213	G	A	5462.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr2	198966110	.	G	GT	55.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.026;ClippingRankSum=0.000;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=2.129;QD=0.69;ReadPosRankSum=-1.485;SOR=0.464;set=HC	GT:AD:AF:DP	0/1:66,15:0.19:81
chr2	200173684	rs10153730	T	G	4614.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr2	200245245	rs1348813	C	G	1326.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr2	200298313	rs7596597	A	G	3471.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr2	200323068	rs143246980	G	A	925.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr2	200677625	rs2030653	C	T	576.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	200684249	.	T	TA	1014.14	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.338;ClippingRankSum=0.000;DP=115;ExcessHet=3.0103;FS=1.154;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=0.573;QD=9.57;ReadPosRankSum=-0.263;SOR=0.488;set=HC	GT:AD:AF:DP	0/1:29,77:0.73:106
chr2	200776353	rs62178345	T	G	4891.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr2	200800493	rs6435039	A	G	149.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	200800881	.	G	C	254.78	.	AC=2;AF=1.00;AN=2;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	200808455	rs16832081	A	G	873.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	200820505	rs281766	T	G	2796.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr2	201194279	rs3739119	C	A	1477.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr2	201277181	rs6706953	T	C	3081.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr2	201334852	rs17532294	A	G	1658.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr2	201337806	rs11402412	G	GA	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.269;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.84;ReadPosRankSum=0.569;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:29,9:0.24:38
chr2	201342238	.	TAAAAAA	T	328.74	.	AC=2;AF=1.00;AN=2;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.53;SOR=4.615;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	201355106	rs13018579	G	A	4565.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr2	201371768	rs3739116	G	T	4120.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr2	201397569	rs842940	G	A	233.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	201397647	rs842939	A	C	870.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	201437328	rs35987478	C	A	8679.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.28;SOR=0.916;set=HC	GT:AD:AF:DP	1/1:0,196:1.00:196
chr2	201437334	rs12052989	T	C	8898.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.27;SOR=0.898;set=HC	GT:AD:AF:DP	1/1:0,201:1.00:201
chr2	201440299	rs3764778	A	G	168.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	201451006	rs4470327	C	T	1680.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr2	201464295	rs10179964	T	C	2248.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr2	201467231	rs2293524	A	G	914.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	201470233	rs200778985	ATTT	A	979.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=29.69;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:1,32:0.97:33
chr2	201473674	rs2470902	G	A	1086.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr2	201474237	rs4672858	A	G	1855.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr2	201485572	rs4672865	A	G	2142.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr2	201485649	rs4672866	T	G	1186.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr2	201488758	rs2348021	A	G	1903.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr2	201515939	rs868810	T	C	1492.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr2	201686666	rs6705053	C	T	897.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	201881948	.	G	GT	221.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.405;ClippingRankSum=0.000;DP=94;ExcessHet=3.0103;FS=5.934;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.04;ReadPosRankSum=0.283;SOR=1.676;set=HC	GT:AD:AF:DP	0/1:49,24:0.33:73
chr2	202122995	rs3769823	A	G	2823.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr2	202139739	.	CT	C	73.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.429;ClippingRankSum=0.000;DP=56;ExcessHet=3.0103;FS=1.640;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=1.765;QD=1.84;ReadPosRankSum=-0.831;SOR=1.162;set=HC	GT:AD:AF:DP	0/1:26,14:0.35:40
chr2	202151163	rs3769818	A	G	5865.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr2	202152162	rs13113	T	A	1971.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr2	202153225	rs700635	C	A	967.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	202153252	rs700636	A	C	1624.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr2	202211443	rs1406122	C	T	3790.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:2,143:0.99:145
chr2	202215409	rs71022364	C	CAAAACAAAACAAAACAA	1332.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=60.58;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	202215492	rs13014235	C	G	2108.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.42;QD=27.04;SOR=0.798;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr2	202245244	rs3795966	A	G	1587.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr2	202245944	rs3832088	TAA	T	2801.73	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr2	202245955	rs72937131	A	G	2859.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.68;SOR=1.230;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr2	202246034	rs3731709	G	C	318.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	202248788	rs7579617	T	C	1478.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr2	202248979	rs7579853	T	A	2396.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr2	202257930	rs3815515	C	A	1097.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr2	202260049	rs2256584	G	A	5293.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;MQ=60.05;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr2	202264156	rs13022344	C	T	6173.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:1,235:1.00:236
chr2	202264316	rs6732993	C	T	943.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:1,32:0.97:33
chr2	202272032	rs11691865	T	A	265.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	202284236	rs113582398	C	CTTAAT	4239.73	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr2	202285100	rs4507084	A	G	1634.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr2	202325632	rs57250433	G	GT	61.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.579;ClippingRankSum=-0.000;DB;DP=24;ExcessHet=3.0103;FS=2.363;MLEAC=1;MLEAF=0.500;MQ=60.45;MQRankSum=0.464;QD=4.41;ReadPosRankSum=0.328;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:5,9:0.64:14
chr2	202337730	rs1019299	A	G	1015.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.74;QD=24.77;SOR=0.741;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	202342402	rs12990557	G	T	1200.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr2	202344179	rs34469362	GT	G	621.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	202352388	rs138926058	A	G	5297.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr2	202357949	rs2714482	A	C	2831.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr2	202402250	rs3083390	AAC	A	952.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr2	202410147	rs10931955	C	A	478.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	202410300	rs10804117	A	T	902.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	202410395	.	G	C	174	.	AC=2;AF=1.00;AN=2;BRF=0.27;FR=0.9998;HP=2;HapScore=2;MGOF=52;MMLQ=24;MQ=59.54;NF=3;NR=12;PP=174;QD=13.9180808365;SC=AATATATATGGGAAAATATTT;SbPval=0.71;Source=Platypus;TC=17;TCF=4;TCR=13;TR=15;WE=202410403;WS=202410385;set=Platypus	GT:AD:AF:DP	1/1:2,15:0.88:17
chr2	202430428	.	ATT	A,AT	560.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.013;ClippingRankSum=0.000;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.17;MQRankSum=0.474;QD=10.01;ReadPosRankSum=0.311;SOR=0.703;set=HC	GT:AD:AF:DP	1/2:11,23,22:0.41,0.39:56
chr2	202447009	rs13425990	C	T	614.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	202468136	rs10205247	T	A	823.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	202469361	rs12474206	C	T	4032.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr2	202469472	rs7572583	A	G	857.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	202491995	rs2540450	G	A	1331.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.61;SOR=1.036;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr2	202505740	rs2540424	T	A	477.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.54;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	202507982	rs6723016	T	C	10381.77	.	AC=2;AF=1.00;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	1/1:2,400:1.00:402
chr2	202509814	rs3754932	T	C	328.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	202523347	rs2597900	C	T	3600.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr2	202526366	rs62193397	G	A	576.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	202528830	rs74887695	A	AT	4175.73	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr2	202531136	rs17384314	G	C	3086.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:2,110:0.98:112
chr2	202534303	rs145833090	TATAGGAAGAGCTTAA	T	98.25	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.75;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr2	202538300	rs11375204	G	GA	819.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:2,39:0.95:41
chr2	202546113	rs1208073	T	C	2946.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr2	202557702	rs6725443	C	T	4064.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr2	202566741	rs7603563	T	C	583.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	202569992	rs3219171	A	T	5303.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr2	202570232	rs3219170	A	G	616.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	202574825	rs1210940	C	T	422.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	202575821	rs3219168	G	A	2099.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;MQ=59.92;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr2	202575907	rs2882231	A	G	1196.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	202580370	rs3219167	G	A	3075.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr2	202598113	rs2276615	C	T	1923.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr2	202606639	rs3731703	G	A	3354.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr2	202608877	rs4673207	C	A	943.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	202625615	rs3219156	C	T	6007.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr2	202633725	rs113884822	TA	T	72.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.396;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=6.683;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.42;ReadPosRankSum=0.043;SOR=2.147;set=HC	GT:AD:AF:DP	0/1:19,11:0.37:30
chr2	202688293	rs4675229	A	G	1542.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr2	202698439	rs72225526	CT	C	120.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.788;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.26;ReadPosRankSum=2.676;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:19,18:0.49:37
chr2	202712095	rs917958	A	C	2259.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr2	202736844	rs13032097	G	T	1871.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:2,66:0.97:68
chr2	202741064	rs2072504	G	A	892.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	202741256	rs4675235	A	T	5016.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr2	202741269	rs4675236	G	A	4966.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr2	202955454	rs1568535	G	C	5114.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr2	202962310	.	C	CT	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.814;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=1.687;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=-0.468;QD=0.88;ReadPosRankSum=1.435;SOR=0.346;set=HC	GT:AD:AF:DP	0/1:28,8:0.22:36
chr2	202974360	rs12615065	T	G	6122.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr2	202978198	.	G	GT	64.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.512;ClippingRankSum=0.000;DP=196;ExcessHet=3.0103;FS=3.890;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.34;ReadPosRankSum=0.572;SOR=1.101;set=HC	GT:AD:AF:DP	0/1:156,33:0.17:189
chr2	202990704	rs56046075	T	C	216.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	203000717	rs7578906	A	T	653.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.672;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=17.67;ReadPosRankSum=-0.844;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:2,35:0.95:37
chr2	203000729	rs56806886	AA	TT	653.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.562;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=16.34;ReadPosRankSum=-1.833;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:2,38:0.95:40
chr2	203003066	rs3043926	G	GGTGT,GGT	4523.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=111;set=Intersection	GT:AF:DP	1/1:1.00:103
chr2	203003085	rs16838883	T	C	5894.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr2	203051886	rs6722588	C	T	776.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	203079307	rs3769817	T	C	596.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	203139738	rs11397579	A	AC	362.73	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	203141063	rs140927221	CA	C	93.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.667;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=1.935;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.91;ReadPosRankSum=-1.534;SOR=0.216;set=HC	GT:AD:AF:DP	0/1:12,12:0.50:24
chr2	203384776	rs11390605	C	CT	992.70	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.598;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=1.296;MLEAC=2;MLEAF=1.000;MQ=60.14;MQRankSum=0.510;QD=13.98;ReadPosRankSum=-0.889;SOR=0.480;set=HC	GT:AD:AF:DP	1/1:13,58:0.82:71
chr2	203630102	rs373287818	CT	C	215.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.389;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=1.556;QD=1.69;ReadPosRankSum=-0.907;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:94,34:0.27:128
chr2	203630562	rs114146579	C	T	1956.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr2	203651278	rs55689177	CA	C	601.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:4,35:0.90:39
chr2	203651475	rs57934594	A	AT	360.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.568;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=1.544;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.75;ReadPosRankSum=2.085;SOR=1.230;set=HC	GT:AD:AF:DP	0/1:13,24:0.65:37
chr2	203661779	rs6704822	A	G	293.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	203680554	rs374333116	TA	T	50.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.946;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=1.568;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.15;ReadPosRankSum=0.033;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:31,13:0.30:44
chr2	203690387	rs1344959	G	A	469.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.10;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	203693559	rs4675296	C	G	4853.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr2	203748544	rs34788166	A	AT	1860.73	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:5,91:0.95:96
chr2	203748594	rs10196719	A	G	1157.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr2	203749392	rs3050865	C	CTTT	502.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	203817257	.	A	AT	222.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.217;ClippingRankSum=0.000;DP=152;ExcessHet=3.0103;FS=0.789;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.48;ReadPosRankSum=2.420;SOR=0.542;set=HC	GT:AD:AF:DP	0/1:120,31:0.21:151
chr2	203820275	rs3731695	T	C	362.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	203838175	rs146569169	A	G	905.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	203880992	rs2351524	T	C	737.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr2	203921270	rs4673241	A	G	1845.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr2	203992707	rs114569446	T	G	1501.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr2	203996870	rs6748898	A	G	3581.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr2	204002809	rs10180815	A	C	819.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	204036545	rs5837845	C	CT	131.94	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:1,9:0.90:10
chr2	204054821	rs143585557	T	C	714.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	204054834	rs62182253	G	A	789.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	204054882	rs148174619	TACACACACACACACACACAC	T	1669.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.07;QD=40.73;SOR=1.845;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	204062061	rs4675323	A	G	9371.77	.	AC=2;AF=1.00;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	1/1:0,366:1.00:366
chr2	204073414	rs140112414	A	G	3458.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr2	204090887	rs2351773	C	G	2884.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr2	204110748	rs56317341	G	A	379.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	204111394	rs13015873	T	C	1397.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	204111398	rs10586509	GTTAA	G	1357.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	204111443	rs6435176	A	G	1760.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr2	204111705	rs6751894	T	C	1610.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr2	204116660	rs3731694	A	T	2092.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr2	204116690	rs2043449	C	T	3664.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr2	204116887	rs2351771	T	G	1922.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr2	204154552	rs1048013	C	T	3043.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr2	204154663	.	GTA	G	85	.	AC=1;AF=0.500;AN=2;BRF=0.35;FR=0.5000;HP=2;HapScore=1;MGOF=29;MMLQ=24;MQ=60.0;NF=0;NR=4;PP=85;QD=23.75;SC=GTGTGTGTGTGTATATATATA;SbPval=1.0;Source=Platypus;TC=21;TCF=0;TCR=21;TR=4;WE=204154672;WS=204154653;set=Platypus	GT:AD:AF:DP	0/1:17,4:0.19:21
chr2	204154686	rs10170454	A	G	717.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	204206977	rs4675333	C	T	1631.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr2	204216255	rs35382487	G	GT	102.19	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.565;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.68;ReadPosRankSum=0.235;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:7,11:0.61:18
chr2	204261723	rs3731652	G	C	6072.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr2	204305093	rs3814365	T	C	2773.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.91;SOR=0.960;set=HC	GT:AD:AF:DP	1/1:0,116:1.00:116
chr2	204309464	rs74396768	T	C	826.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	204322298	rs2469953	T	C	5466.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.54;SOR=0.837;set=HC	GT:AD:AF:DP	1/1:0,206:1.00:206
chr2	204355767	.	CAA	C	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.637;ClippingRankSum=-0.000;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.49;MQRankSum=0.431;QD=2.89;ReadPosRankSum=1.255;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:8,4:0.33:12
chr2	204355822	rs2469962	G	A	1055.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr2	204732714	rs231775	A	G	4138.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr2	204732850	rs231776	A	G	4018.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr2	204822670	rs5837889	A	AT	68.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.736;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.36;MQRankSum=4.027;QD=0.64;ReadPosRankSum=0.653;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:88,19:0.18:107
chr2	204824178	rs111245028	A	AGT	926.86	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.258;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.69;MQRankSum=0.498;QD=21.06;ReadPosRankSum=0.544;SOR=1.673;set=HC	GT:AD:AF:DP	0/1:7,37:0.84:44
chr2	204824283	rs10172036	T	G	4390.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr2	205912210	rs7563474	C	A	229.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	205912403	rs1510765	T	C	1614.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr2	205969023	rs2289024	A	C	1227.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr2	205978114	rs1848948	A	G	1058.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:2,25:0.93:27
chr2	205978117	rs71032443	G	GGTGT,GGT	1046.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=28;set=Intersection	GT:AF:DP	1/1:0.93:28
chr2	205988943	rs41272651	T	C	622.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:1,23:0.96:24
chr2	206036918	rs736320	C	T	4433.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr2	206041366	.	TAA	T,TA	710.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.570;ClippingRankSum=0.000;DP=73;ExcessHet=3.0103;FS=1.751;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.15;MQRankSum=0.486;QD=12.69;ReadPosRankSum=-0.312;SOR=0.321;set=HC	GT:AD:AF:DP	1/2:9,26,21:0.46,0.38:56
chr2	206050355	rs62172732	A	G	2662.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:1,90:0.99:91
chr2	206165185	rs11690400	T	A	641.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr2	206166580	rs11686273	G	A	3450.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr2	206364487	rs11687914	T	C	214.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	206364791	rs11683289	C	G	1215.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr2	206418032	rs6730102	G	A	2826.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr2	206562250	rs849558	C	T	3311.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr2	206581033	rs849541	G	A	2507.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr2	206590879	rs73064192	C	T	2691.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:3,104:0.97:107
chr2	206592534	rs2241157	T	C	736.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	206605180	rs849575	T	G	5936.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr2	206608039	rs849568	T	C	4475.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr2	206610502	rs849563	T	G	11443.77	.	AC=2;AF=1.00;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	1/1:3,443:0.99:446
chr2	206630073	rs35659576	A	AAC	997.73	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:14,36:0.72:50
chr2	206884595	rs11366043	AT	A	1950.73	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:1,91:0.99:92
chr2	206911191	rs34828561	C	CA	686.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.024;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=16.75;ReadPosRankSum=2.499;SOR=0.540;set=HC	GT:AD:AF:DP	1/1:4,37:0.90:41
chr2	206921451	rs818009	G	A	3821.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr2	206921763	rs17220727	C	T	678.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	206927850	rs17286674	G	A	1503.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr2	207024886	rs113729178	G	GC	707.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.86;QD=30.77;SOR=1.708;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	207172627	rs7582864	A	G	2477.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr2	207174316	rs3732084	T	C	5797.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr2	207582852	rs16838691	A	G	447.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	207583169	rs16838693	T	C	2015.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr2	207621759	rs1990849	A	G	4143.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr2	207625567	rs1862087	T	C	2201.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.85;SOR=1.220;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr2	207629795	rs16838834	T	A	1103.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr2	207629821	rs28365798	T	TGCAA	2464.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr2	207629846	rs28365797	A	T	2708.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr2	207629904	rs3828294	G	A	5793.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr2	207647981	rs2241347	C	T	307.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.67;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	207653653	rs76270461	G	A	1628.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr2	207946141	rs2287507	A	G	3596.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr2	207946164	rs2287506	T	C	2371.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr2	207974818	rs2244923	C	T	3731.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr2	207988613	rs2700166	C	T	1493.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr2	207998800	rs2284934	C	T	7522.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.40;SOR=1.004;set=HC	GT:AD:AF:DP	1/1:0,285:1.00:285
chr2	207998878	rs369833642	A	ATTTTTTT	2103.73	.	AC=2;AF=1.00;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=32.87;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:3,61:0.95:64
chr2	208031992	rs1269424	T	A	3539.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr2	208447642	rs12478868	A	T	2169.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.189;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=1.147;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.91;ReadPosRankSum=2.471;SOR=0.452;set=HC	GT:AD:AF:DP	0/1:13,96:0.88:109
chr2	208477852	rs2551949	G	A	10807.77	.	AC=2;AF=1.00;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	1/1:0,409:1.00:409
chr2	208477956	rs2709416	C	T	8234.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr2	208591523	rs77591925	G	A	528.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr2	208611699	.	CAA	C	65.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.235;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;FS=3.928;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.69;ReadPosRankSum=0.193;SOR=1.245;set=HC	GT:AD:AF:DP	0/1:31,8:0.21:39
chr2	208633413	rs4675711	T	C	4139.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr2	208693261	rs720632	C	G	3219.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr2	208693307	rs720631	T	C	1417.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr2	208717440	rs10932211	A	G	3085.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr2	208811097	rs10932215	C	T	4492.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr2	208811284	rs10932216	C	T	2561.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr2	208841964	rs4441448	A	G	5991.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr2	208865712	.	G	GA	64.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.137;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;FS=1.366;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.51;ReadPosRankSum=-1.157;SOR=0.404;set=HC	GT:AD:AF:DP	0/1:31,12:0.28:43
chr2	208986385	rs2305429	A	G	3289.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr2	208986637	rs2305430	T	C	5913.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr2	208989037	rs2242074	A	G	3584.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr2	209007559	rs796287	T	G	3846.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr2	209030330	rs34111482	G	GT	199.86	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:2,12:0.86:14
chr2	209030400	rs73986528	C	T	912.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:2,36:0.95:38
chr2	209030572	rs6721025	A	G	937.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr2	209033097	rs13414543	A	G	650.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr2	209033173	rs7562540	A	G	359.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	209035485	rs6435420	T	G	1822.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr2	209035658	rs6748431	C	T	7615.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr2	209035849	rs4292037	A	C	1713.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr2	209036605	rs10932244	T	C	3190.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr2	209036712	rs10804166	T	C	6126.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr2	209036778	rs6435421	A	G	3681.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr2	209046162	rs6435425	G	A	1174.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.51;SOR=2.387;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	209046162	.	GTA	ATG	1035	.	AC=2;AF=1.00;AN=2;BRF=0.18;FR=1.0000;HP=1;HapScore=1;MGOF=0;MMLQ=28;MQ=60.0;NF=6;NR=19;PP=1035;QD=43.5387149945;SC=AATAAAATTGGTATGATTGTT;SbPval=0.53;Source=Platypus;TC=26;TCF=6;TCR=20;TR=25;WE=209046172;WS=209046152;set=Platypus	GT:AD:AF:DP	1/1:1,25:0.96:26
chr2	209046164	rs6435426	A	G	1174.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.18;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr2	209049830	rs60533219	T	TC	2306.73	.	AC=2;AF=1.00;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.16;SOR=3.567;set=HC	GT:AD:AF:DP	1/1:1,108:0.99:109
chr2	209049899	rs10497896	G	C	1426.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr2	209051586	rs7572263	A	G	576.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	209101905	rs57383668	GA	G	734.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr2	209138946	rs6705163	C	T	771.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	209163556	rs7569723	C	T	5604.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr2	209168853	rs893256	C	T	4152.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr2	209176807	rs12624141	T	G	501.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	209182480	rs10174541	A	G	553.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	209182499	rs113250005	T	TA	430.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr2	209182548	rs10497898	A	G	1068.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr2	209182677	rs112715599	CAGTTCAGCAGTGA	C	7701.73	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr2	209184844	rs934712	A	G	231.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	209184980	rs10932258	G	A	941.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr2	209184999	rs10932259	C	T	935.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr2	209189912	rs893255	A	G	1631.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr2	209190330	rs2363468	T	C	4775.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr2	209190519	rs893254	A	T	9366.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.18;SOR=0.833;set=HC	GT:AD:AF:DP	1/1:0,212:1.00:212
chr2	209190528	rs893253	C	G	9612.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.30;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:0,222:1.00:222
chr2	209190632	rs999890	T	G	11158.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr2	209190649	rs999891	A	G	10786.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr2	209191082	rs1529979	C	A	3469.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr2	209191099	rs1529978	T	C	3041.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr2	209194696	rs1437414	G	C	710.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	209195099	rs1866045	G	A	697.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	209195133	rs12694109	T	C	1060.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr2	209195472	rs34136239	G	GT	405.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=33.81;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	209195491	rs112938452	G	GAGA	465.73	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	209198000	rs11885913	C	T	1147.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr2	209198068	.	G	A	3370.77	.	AC=2;AF=1.00;AN=2;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr2	209199945	rs2363469	A	G	2540.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:1,82:0.99:83
chr2	209201054	rs6744236	T	C	615.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	209201739	rs7596571	T	C	231.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	209203122	rs4675756	C	G	428.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	209204319	rs17699838	A	G	2204.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:1,74:0.99:75
chr2	209209827	rs2304544	G	A	3734.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.41;SOR=1.324;set=HC	GT:AD:AF:DP	1/1:0,147:1.00:147
chr2	209209997	rs2043718	C	T	1285.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr2	209214770	rs2118297	A	G	2749.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:1,111:0.99:112
chr2	209215448	rs994696	A	G	612.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.18;SOR=2.200;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	209215586	rs994697	A	G	1781.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr2	209219190	rs6435453	A	G	1196.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr2	209220157	rs10208191	G	T	857.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	209224874	rs11357589	CA	C	2100.73	.	AC=2;AF=1.00;AN=2;DB;DP=59;MQ=60.18;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr2	209293168	rs962595	C	T	1161.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr2	209345944	.	CTT	C,CT	709.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.455;ClippingRankSum=0.000;DP=143;ExcessHet=3.0103;FS=2.560;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.96;MQRankSum=0.000;QD=9.59;ReadPosRankSum=0.819;SOR=1.141;set=HC	GT:AD:AF:DP	1/2:16,25,33:0.34,0.45:74
chr2	209346020	rs61511423	T	TGCAACCTC	1717.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr2	209353607	rs6726003	A	G	385.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	209353656	rs11335842	GT	G	581.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:2,31:0.94:33
chr2	209358027	rs3820900	C	T	4599.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr2	210517785	rs2254169	C	T	1549.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr2	210594540	rs4673486	A	G	3979.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:2,151:0.99:153
chr2	210594717	rs11389149	C	CT	1146.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr2	210594768	rs7594601	T	C	953.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	210659434	rs7603924	A	G	1161.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr2	210678691	rs2159745	T	G	2596.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr2	210745681	rs2370838	C	A	5050.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr2	210786137	rs9288415	G	A	942.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	210874246	rs3738934	T	C	1456.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr2	210880893	rs7570090	C	T	3954.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:4,150:0.97:154
chr2	210882456	rs2243769	G	T	492.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.12;QD=28.99;SOR=1.371;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	210882677	rs2723213	C	T	207.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	210889759	rs6435550	A	G	2419.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr2	211060050	rs2286963	T	G	3679.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:1,131:0.99:132
chr2	211069438	rs263677	G	A	4309.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr2	211074909	rs3764913	T	C	2097.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.22;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr2	211082840	.	A	G	6674.77	.	AC=2;AF=1.00;AN=2;DP=257;set=Intersection	GT:AD:AF:DP	1/1:2,249:0.99:251
chr2	211163063	.	TACAC	T,TAC	1067.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.278;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=3.004;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.46;MQRankSum=0.422;QD=28.10;ReadPosRankSum=0.164;SOR=1.949;set=HC	GT:AD:AF:DP	1/2:2,10,26:0.26,0.68:38
chr2	211302627	rs41272663	C	A	2049.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr2	211320041	rs59908560	G	GAAA	945.06	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.368;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=2.208;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=27.80;ReadPosRankSum=-1.632;SOR=1.536;set=HC	GT:AD:AF:DP	1/1:4,30:0.88:34
chr2	211340937	rs3214410	A	AT	578.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:2,29:0.94:31
chr2	211341204	rs56033100	G	GC	591.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	211421452	rs3835047	A	ATCT	6721.73	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr2	211444533	rs35833900	G	GGT	1434.73	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:14,54:0.79:68
chr2	211452598	rs149496892	TAC	T	1087.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	211456637	rs1047883	A	G	8484.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.42;SOR=0.725;set=HC	GT:AD:AF:DP	1/1:0,191:1.00:191
chr2	211456637	.	ACC	GCT	2947	.	AC=2;AF=1.00;AN=2;BRF=0.42;FR=1.0000;HP=4;HapScore=1;MGOF=2;MMLQ=23;MQ=60.0;NF=64;NR=65;PP=2947;QD=20;SC=CTTGGACAACACCCTCCCTGC;SbPval=0.5;Source=Platypus;TC=136;TCF=68;TCR=68;TR=129;WE=211456647;WS=211456627;set=Platypus	GT:AD:AF:DP	1/1:7,129:0.95:136
chr2	211456639	rs2229589	C	T	8484.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.66;SOR=0.714;set=HC	GT:AD:AF:DP	1/1:0,190:1.00:190
chr2	211481257	rs2287599	C	G	6172.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:2,225:0.99:227
chr2	211513118	rs4673540	C	T	1423.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr2	211514995	rs34449727	G	T	3195.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr2	211521227	rs58225253	CT	C	1270.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.340;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=2.247;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=0.856;QD=10.86;ReadPosRankSum=-1.905;SOR=0.848;set=HC	GT:AD:AF:DP	0/1:17,100:0.85:117
chr2	211523457	rs6435580	C	T	5468.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr2	211527827	rs5838215	GT	G	2454.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.626;ClippingRankSum=0.000;DB;DP=212;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=1.105;QD=11.92;ReadPosRankSum=-0.662;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:44,162:0.79:206
chr2	211532800	.	ATG	A	200.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.377;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.48;ReadPosRankSum=-0.472;SOR=0.404;set=HC	GT:AD:AF:DP	0/1:21,10:0.32:31
chr2	211533070	rs10932347	A	G	3431.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr2	211541721	rs41272673	A	G	3384.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr2	212251864	rs3748962	T	C	1911.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr2	212252809	rs934607	G	A	5357.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.62;SOR=1.251;set=HC	GT:AD:AF:DP	1/1:0,194:1.00:194
chr2	212295590	rs141267844	G	GT	1158.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr2	212295875	rs6710946	C	T	2521.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr2	212488828	rs146953835	GTC	G	179.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.360;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=1.149;MLEAC=1;MLEAF=0.500;MQ=60.34;MQRankSum=-0.844;QD=1.76;ReadPosRankSum=0.229;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:87,15:0.15:102
chr2	212488870	rs3215298	G	GC	3128.73	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr2	212578379	.	T	TA	142.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.430;ClippingRankSum=0.000;DP=127;ExcessHet=3.0103;FS=1.964;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.27;ReadPosRankSum=0.176;SOR=0.483;set=HC	GT:AD:AF:DP	0/1:88,24:0.21:112
chr2	212589986	rs35778743	T	C	2354.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:2,91:0.98:93
chr2	212615516	rs6757068	T	C	1642.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr2	213291226	rs34480397	C	CTCTT	716.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.51;QD=42.16;SOR=2.712;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	213886454	rs2291241	A	T	2460.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr2	213886647	rs141472671	A	ATTTTATCT	1743.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr2	213914343	rs2165444	C	T	346.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	213945992	.	G	GA	56.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.695;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.58;ReadPosRankSum=0.183;SOR=0.541;set=HC	GT:AD:AF:DP	0/1:27,9:0.25:36
chr2	214012405	rs6738070	A	C	4943.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.222;ClippingRankSum=0.000;DB;DP=269;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=21.40;ReadPosRankSum=2.056;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:13,218:0.94:231
chr2	214142631	rs13000409	G	C	2155.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr2	214161773	rs975956	C	T	1629.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr2	214161849	rs1488988	C	T	2405.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr2	214174659	rs72935193	A	G	220.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	214174767	rs10498003	C	T	1355.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.58;SOR=0.981;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr2	214182100	rs10183630	A	T	875.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	214228792	rs12469417	C	T	677.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	214228959	rs4146048	G	A	1007.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	214233812	rs6752347	C	A	1611.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr2	214261534	rs339815	T	C	499.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	214727150	rs2042790	T	C	2664.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr2	214727221	rs2042791	A	C	4531.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr2	214727367	rs2042792	C	G	2521.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr2	215013777	rs5838412	GTA	G	592.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:11,24:0.69:35
chr2	215013787	rs2372225	A	G	154.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.991;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=3.859;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.07;ReadPosRankSum=0.050;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:28,10:0.26:38
chr2	215013801	.	GT	AT	645	.	AC=1;AF=0.500;AN=2;BRF=0.33;FR=0.5000,0.5000;HP=2;HapScore=2;MGOF=12;MMLQ=22;MQ=59.69;NF=24,12;NR=5,6;PP=227,645;QD=9.02659353611;SC=GTGTGTGTGTGTATATATATA;SbPval=0.85;Source=Platypus;TC=44;TCF=33;TCR=11;TR=29,18;WE=215013809;WS=215013767;set=Platypus	GT:AD:AF:DP	0/1:15,29:0.66:44
chr2	215013801	.	GT	GTATAT	645	.	AC=1;AF=0.500;AN=2;BRF=0.33;FR=0.5000,0.5000;HP=2;HapScore=2;MGOF=12;MMLQ=22;MQ=59.69;NF=24,12;NR=5,6;PP=227,645;QD=9.02659353611;SC=GTGTGTGTGTGTATATATATA;SbPval=0.85;Source=Platypus;TC=44;TCF=33;TCR=11;TR=29,18;WE=215013809;WS=215013767;set=Platypus	GT:AD:AF:DP	0/1:11,18:0.62:29
chr2	215013801	rs2372226	G	A,GTATA	1318.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.207;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=31.40;ReadPosRankSum=1.277;SOR=0.818;set=HC	GT:AD:AF:DP	1/2:4,11,27:0.26,0.64:42
chr2	215102929	rs1912207	T	A	3691.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr2	215593261	rs33960630	C	CT	67.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.307;ClippingRankSum=-0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.76;ReadPosRankSum=-0.999;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:10,8:0.44:18
chr2	215595765	rs6435849	C	G	2947.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr2	215595861	rs34664471	G	GA	663.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.80;QD=39.04;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	215595872	rs28685662	G	A	779.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.13;QD=41.04;SOR=4.514;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	215632256	rs2070093	A	G	6731.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr2	215645545	rs2070096	C	G	4334.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:1,159:0.99:160
chr2	215657182	.	TAA	T,TA	815.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.029;ClippingRankSum=0.000;DP=78;ExcessHet=3.0103;FS=1.456;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=13.16;ReadPosRankSum=0.598;SOR=1.051;set=HC	GT:AD:AF:DP	1/2:8,21,33:0.34,0.53:62
chr2	215797332	rs17426207	C	T	2830.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:1,108:0.99:109
chr2	215797527	rs10532785	AATTC	A	1884.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr2	215802112	rs3738884	G	A	553.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	215809597	rs10633768	G	GTA	132.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:1,5:0.83:6
chr2	215812297	rs2274412	G	A	3897.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr2	215820013	rs10498027	G	A	7514.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr2	215821580	rs17492577	T	C	867.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	215833415	rs4673925	A	G	1453.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr2	215833622	rs6756540	G	T	467.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	215840414	rs17493319	C	A	483.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	215840829	rs7594021	A	G	775.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	215848034	rs7608150	T	C	78.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr2	215851246	rs7559069	A	G	1714.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr2	215855780	rs4533467	G	A	3791.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr2	215862383	rs1980844	G	A	2461.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr2	215862633	rs1326748	C	G	1210.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr2	215872334	rs940279	G	A	2948.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr2	215874965	rs6733264	G	T	1625.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr2	215875251	rs1409607	A	T	2165.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr2	215876166	rs7560008	A	T	1098.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr2	215876589	rs11388414	G	GT	46.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.588;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=4.566;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.68;ReadPosRankSum=2.867;SOR=1.516;set=HC	GT:AD:AF:DP	0/1:55,14:0.20:69
chr2	215878240	rs7594353	G	A	3059.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.00;SOR=1.751;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr2	215878246	rs10192100	C	T	3249.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.66;SOR=1.493;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr2	215880108	rs6753310	C	T	607.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr2	215890352	rs5838480	GTT	G	236.75	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.385;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=3.979;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=23.67;ReadPosRankSum=1.645;SOR=1.198;set=HC	GT:AD:AF:DP	1/1:1,9:0.90:10
chr2	215940242	rs6711179	T	C	6706.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr2	215940283	.	G	GA	64.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.416;ClippingRankSum=0.000;DP=287;ExcessHet=3.0103;FS=2.262;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.24;ReadPosRankSum=0.522;SOR=0.897;set=HC	GT:AD:AF:DP	0/1:226,41:0.15:267
chr2	215976231	rs2948978	A	T	99.87	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr2	216176807	rs4535042	T	G	1795.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr2	216176978	rs190514165	G	A	560.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr2	216182769	rs4672766	A	T	1540.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr2	216190020	rs2372536	C	G	3377.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr2	216190691	rs2177737	A	C	1823.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr2	216200907	rs13002576	C	G	3573.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:2,135:0.99:137
chr2	216209472	rs13010249	A	G	7618.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:3,300:0.99:303
chr2	216211712	rs10932609	A	T	2732.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr2	216212279	rs4673992	G	C	4813.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr2	216212339	rs4673993	T	C	5607.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:2,208:0.99:210
chr2	216213678	.	TA	T	45.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.477;ClippingRankSum=0.000;DP=60;ExcessHet=3.0103;FS=1.517;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.88;ReadPosRankSum=-0.036;SOR=1.222;set=HC	GT:AD:AF:DP	0/1:39,13:0.25:52
chr2	216214124	rs4672768	G	A	1276.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr2	216229692	rs11651	A	G	7142.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:1,279:1.00:280
chr2	216235089	rs1250209	C	T	5917.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr2	216235269	.	ACAAAAAAC	A	173.87	.	AC=2;AF=1.00;AN=2;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.77;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr2	216243832	rs1250204	T	C	4818.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr2	216249819	rs1250201	C	T	637.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	216256615	rs6709607	T	C	422.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	216262302	rs56029730	CT	C	368.73	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	216262621	rs6725958	A	C	2549.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:1,95:0.99:96
chr2	216263926	rs2692224	C	A	1534.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr2	216263938	rs3832178	C	CT	2316.73	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr2	216272819	rs7570208	C	G	2150.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr2	216272900	rs2577301	T	G	5124.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr2	216274853	rs5838511	AAC	A	201.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.271;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.89;ReadPosRankSum=1.544;SOR=0.815;set=HC	GT:AD:AF:DP	0/1:88,19:0.18:107
chr2	216285375	rs17458018	T	C	4695.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr2	216288841	rs56137176	T	C	1269.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr2	216295312	rs1250241	T	A	821.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	216299629	rs1250247	C	G	1932.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr2	216300482	rs1250259	T	A	2441.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr2	216808354	rs150285041	G	A	558.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	216809874	rs74763482	A	T	2048.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr2	216810468	rs62183184	A	C	5373.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr2	216811707	rs1344695	G	T	2046.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr2	216878008	rs1864253	C	G	8635.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:2,317:0.99:319
chr2	216908679	rs2303842	C	T	2628.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr2	217012901	rs207906	A	G	4179.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr2	217024697	rs58550995	CT	C	263.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.975;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=15.51;ReadPosRankSum=-0.103;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:1,16:0.94:17
chr2	217055171	rs12470053	A	G	1913.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr2	217059809	rs3821102	G	A	1077.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr2	217123958	rs169616	T	C	1081.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr2	217148417	rs876771	C	A	3437.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr2	217280261	rs5838583	GT	G	366.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.995;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=15.28;ReadPosRankSum=-1.447;SOR=1.255;set=HC	GT:AD:AF:DP	1/1:1,23:0.96:24
chr2	217281150	rs3214962	AC	A	1243.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr2	217297350	rs2271334	G	A	506.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	217311630	rs284550	G	T	1902.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr2	217329184	rs2129119	T	C	1571.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr2	217329432	rs34170201	C	CA	244.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.206;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=1.772;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.000;QD=2.13;ReadPosRankSum=-0.047;SOR=0.479;set=HC	GT:AD:AF:DP	0/1:83,32:0.28:115
chr2	217342000	rs284523	T	C	1643.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr2	217342063	rs205980	A	G	820.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	217342773	rs284524	T	G	417.18	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:1,14:0.93:15
chr2	217343136	rs5838586	G	GC	739.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	217498290	rs5838590	C	CGCCGCTGCT	603.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=65.97;QD=35.51;SOR=1.371;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	217541582	rs2160549	T	C	8766.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:0,319:1.00:319
chr2	217724544	rs62180545	A	G	4672.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr2	217736131	rs2241191	G	A	1394.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr2	218577575	rs1835333	T	A	381.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	218604247	rs4672848	A	C	2771.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.00;SOR=1.090;set=HC	GT:AD:AF:DP	1/1:0,99:1.00:99
chr2	218604356	rs4294980	G	A	3710.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr2	218674514	rs13389312	A	T	1859.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr2	218674614	rs13417442	C	T	3487.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr2	218674697	rs918949	C	T	2538.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr2	218675144	rs918950	G	A	2317.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr2	218675199	rs1035672	G	A	1013.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr2	218682474	rs12694422	A	G	4936.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:4,195:0.98:199
chr2	218682771	rs3796026	A	G	6606.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr2	218683139	rs34291329	G	A	3381.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr2	218683154	rs2571445	A	G	3344.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr2	218683257	rs2571442	A	G	4864.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr2	218694510	rs55877504	CT	C	4539.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr2	218694512	rs55694913	T	G	4548.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr2	218694962	rs10165160	C	G	836.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	218745685	rs10199795	G	A	6255.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr2	218746990	rs2303381	A	T	2169.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:1,79:0.99:80
chr2	218747190	rs2303383	T	C	1481.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:1,52:0.98:53
chr2	218749626	rs2288165	T	C	4225.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr2	218750359	rs6714587	G	A	1235.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	218750377	rs12990490	C	T	1420.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr2	218750453	rs35040165	A	AG	2519.73	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr2	218750703	rs2288166	C	T	3246.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.40;SOR=0.848;set=HC	GT:AD:AF:DP	1/1:0,123:1.00:123
chr2	218750731	rs2288167	G	C	5439.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.59;SOR=0.726;set=HC	GT:AD:AF:DP	1/1:0,122:1.00:122
chr2	218750734	rs2288168	T	A	5439.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.23;SOR=0.742;set=HC	GT:AD:AF:DP	1/1:0,123:1.00:123
chr2	218750817	rs10211238	T	C	2323.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr2	218758123	rs141673800	G	GCGCA,GCGCACA	1250.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.038;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=2.997;MLEAC=1,1;MLEAF=0.500,0.500;MQ=62.18;MQRankSum=0.444;QD=32.07;ReadPosRankSum=1.458;SOR=2.019;set=HC	GT:AD:AF:DP	1/2:3,9,27:0.23,0.69:39
chr2	218759674	rs2288169	G	C	5981.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr2	218768422	rs3791936	T	G	4029.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:1,146:0.99:147
chr2	218770003	rs7600493	G	A	12313.77	.	AC=2;AF=1.00;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	1/1:0,459:1.00:459
chr2	218770984	rs2288170	C	T	631.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	218801767	rs4674232	C	T	4156.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr2	219082119	rs2271541	G	T	4160.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:1,166:0.99:167
chr2	219082330	rs12694432	A	G	5034.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr2	219093278	rs60528331	A	G	515.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	219099260	rs1018288	G	C	759.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr2	219099484	rs10932765	T	C	1619.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr2	219103313	rs201794824	CTTT	C	1110.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=28.48;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:2,37:0.95:39
chr2	219103580	rs10169718	A	G	3079.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr2	219104316	rs34974153	AT	A	480.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.569;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=4.042;MLEAC=1;MLEAF=0.500;MQ=60.69;MQRankSum=1.106;QD=10.93;ReadPosRankSum=0.298;SOR=1.688;set=HC	GT:AD:AF:DP	0/1:7,37:0.84:44
chr2	219117482	rs35271699	G	A	217.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	219128506	rs2292549	C	T	3563.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr2	219138940	rs4791	C	T	3382.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:1,123:0.99:124
chr2	219139573	rs6734242	G	A	331.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	219142023	rs2168703	G	A	795.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	219142492	rs2168704	G	A	3666.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr2	219142773	rs6707559	C	T	1801.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr2	219144815	rs2045435	T	C	11535.77	.	AC=2;AF=1.00;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	1/1:0,444:1.00:444
chr2	219146803	rs2292553	G	A	638.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	219153983	rs10707182	GA	G	631.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	219187901	rs1870125	C	T	1104.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr2	219206919	rs3816562	C	T	1284.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr2	219209393	rs1350336	A	G	4020.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr2	219221982	rs144807145	G	GTC	479.73	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:11,19:0.63:30
chr2	219227756	rs6723716	T	C	1473.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr2	219231807	rs3845833	C	T	3299.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr2	219232354	rs7608923	C	A	2943.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr2	219254622	rs2695342	A	G	6799.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr2	219257688	rs2045433	T	C	3912.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr2	219263277	rs2695344	A	G	723.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr2	219265094	rs2579958	T	C	4083.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr2	219265136	rs11463820	T	TC	5224.73	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr2	219266204	rs2252235	T	C	3828.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr2	219267781	rs2227255	C	T	7488.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr2	219267913	rs2227258	A	G	12633.77	.	AC=2;AF=1.00;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	1/1:2,463:1.00:465
chr2	219288382	rs4672893	A	G	3113.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr2	219295835	rs4674307	G	A	1714.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr2	219305404	rs2305833	G	C	2684.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr2	219319657	rs6436058	A	G	2721.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr2	219320207	rs3932856	C	A	1886.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr2	219320233	.	GAAAA	G,GA	2737.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.787;ClippingRankSum=0.000;DP=103;ExcessHet=3.0103;FS=4.181;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.11;MQRankSum=0.265;QD=29.12;ReadPosRankSum=-0.240;SOR=2.694;set=HC	GT:AD:AF:DP	1/2:3,43,48:0.46,0.51:94
chr2	219321692	rs5838699	CA	C	533.84	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:4,32:0.89:36
chr2	219339283	rs549026	T	C	2156.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr2	219341717	.	GA	G	90.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.377;ClippingRankSum=0.000;DP=87;ExcessHet=3.0103;FS=2.621;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.31;ReadPosRankSum=1.080;SOR=0.361;set=HC	GT:AD:AF:DP	0/1:52,17:0.25:69
chr2	219350358	rs141872712	CAAA	C	2661.73	.	AC=2;AF=1.00;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=24.65;SOR=1.721;set=HC	GT:AD:AF:DP	1/1:7,101:0.94:108
chr2	219353195	rs10932782	C	T	1277.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr2	219362735	rs114092169	T	C	1485.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr2	219433597	rs526897	G	A	2822.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr2	219433888	rs689116	C	A	3859.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr2	219445523	.	A	G	3318.77	.	AC=2;AF=1.00;AN=2;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr2	219445860	rs34214861	GAA	G	2154.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr2	219447912	rs2952825	A	G	3485.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:5,110:0.96:115
chr2	219447950	.	GTGTGTGTCTCTCTCTCTCTCTCTCTCTC	G	747	.	AC=1;AF=0.500;AN=2;BRF=0.44;FR=0.5000;HP=2;HapScore=1;MGOF=53;MMLQ=23;MQ=55.77;NF=1;NR=46;PP=747;QD=15.9574468085;SC=GTGTGTGTGTGTGTGTGTCTC;SbPval=0.6;Source=Platypus;TC=51;TCF=1;TCR=50;TR=47;WE=219447987;WS=219447938;set=Platypus	GT:AD:AF:DP	1/0:4,47:0.92:51
chr2	219480804	rs485765	G	C	3606.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr2	219487299	rs1850169	A	T	1034.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.24;SOR=1.347;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	219492924	rs612874	T	C	8448.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:2,325:0.99:327
chr2	219498759	rs7574429	T	G	2623.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr2	219501133	rs2278530	G	A	10032.77	.	AC=2;AF=1.00;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	1/1:2,373:0.99:375
chr2	219501328	rs1055816	G	A	2531.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr2	219505653	.	AT	A	30	.	AC=2;AF=1.00;AN=2;BRF=0.2;FR=0.9999;HP=19;HapScore=2;MGOF=1;MMLQ=25;MQ=60.0;NF=1;NR=2;PP=30;QD=11.0;SC=CTTGCTAGGGATTTTTTTTTT;SbPval=0.48;Source=Platypus;TC=5;TCF=1;TCR=4;TR=3;WE=219505661;WS=219505643;set=Platypus	GT:AD:AF:DP	1/1:2,3:0.60:5
chr2	219508988	rs3770214	T	C	4581.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr2	219509618	rs2230115	C	A	5951.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr2	219517088	rs4674323	T	C	1660.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr2	219525582	rs6722185	A	G	863.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	219616610	rs72027596	C	CT	30.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.734;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=1.160;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.33;ReadPosRankSum=-0.649;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:77,15:0.16:92
chr2	219691566	rs1467320	A	G	835.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	219692527	rs11385903	G	GC	6170.73	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr2	219692790	rs5838710	A	AG	3298.73	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr2	219696014	rs650898	G	A	2378.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr2	220022176	rs6436120	C	T	546.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr2	220034497	rs142326026	C	CCA	8857.73	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:3,229:0.99:232
chr2	220037393	rs4674361	A	G	3809.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr2	220040216	rs368784782	CA	C	130.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.175;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.566;QD=1.95;ReadPosRankSum=-0.222;SOR=0.831;set=HC	GT:AD:AF:DP	0/1:47,20:0.30:67
chr2	220041455	rs6436125	C	T	3797.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr2	220045035	rs7577690	G	A	1510.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr2	220071879	rs66491679	TG	T	608.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	220072766	rs4674366	G	T	2084.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr2	220074793	rs73993544	T	A	1452.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:2,50:0.96:52
chr2	220075045	rs78861870	T	C	10755.77	.	AC=2;AF=1.00;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	1/1:5,393:0.99:398
chr2	220078496	rs2139823	T	C	3598.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr2	220082775	rs73993546	G	C	1372.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr2	220096903	rs3817424	A	T	2990.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:1,105:0.99:106
chr2	220097257	rs61747682	G	C	2777.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:2,101:0.98:103
chr2	220098758	rs73991426	A	G	2107.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:1,69:0.99:70
chr2	220100623	rs55727457	T	C	9144.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	1/1:4,344:0.99:348
chr2	220100683	rs2293078	C	G	10711.77	.	AC=2;AF=1.00;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	1/1:2,397:0.99:399
chr2	220100922	rs56927225	A	G	2854.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr2	220104598	rs73991428	A	T	2542.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr2	220107665	rs3755049	AA	GC	3804.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr2	220108300	rs11552796	T	C	2805.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:1,104:0.99:105
chr2	220112765	rs56019765	G	A	888.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	220113242	rs7601549	T	G	11426.77	.	AC=2;AF=1.00;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	1/1:0,402:1.00:402
chr2	220116509	rs45488900	G	T	3932.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr2	220117458	rs1024131	G	A	6364.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:4,243:0.98:247
chr2	220118076	rs60456844	CG	C	144.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.104;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=3.981;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.45;ReadPosRankSum=0.789;SOR=0.319;set=HC	GT:AD:AF:DP	0/1:81,19:0.19:100
chr2	220118672	rs61692384	CG	C	563.80	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.818;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=3.098;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.55;ReadPosRankSum=-1.760;SOR=2.030;set=HC	GT:AD:AF:DP	1/1:2,23:0.92:25
chr2	220136059	rs7580926	C	A	7166.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:1,254:1.00:255
chr2	220136155	rs7594971	T	C	15026.77	.	AC=2;AF=1.00;AN=2;DB;DP=558;set=Intersection	GT:AD:AF:DP	1/1:0,558:1.00:558
chr2	220136239	rs77762019	C	T	14038.77	.	AC=2;AF=1.00;AN=2;DB;DP=519;set=Intersection	GT:AD:AF:DP	1/1:1,513:1.00:514
chr2	220136351	rs3731892	G	C	18526.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.953;ClippingRankSum=0.000;DB;DP=437;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.58;MQRankSum=-0.253;QD=42.79;ReadPosRankSum=-0.623;SOR=0.609;set=HC	GT:AD:AF:DP	1/1:1,432:1.00:433
chr2	220136360	rs56105486	C	T	18139.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.261;ClippingRankSum=0.000;DB;DP=413;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.51;MQRankSum=-0.272;QD=44.35;ReadPosRankSum=-0.810;SOR=0.497;set=HC	GT:AD:AF:DP	1/1:1,408:1.00:409
chr2	220136371	rs3731894	T	C	10681.77	.	AC=2;AF=1.00;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	1/1:0,392:1.00:392
chr2	220145286	rs2276638	C	T	2666.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr2	220146402	rs3731896	C	T	2031.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr2	220146609	rs3832110	C	CG	1636.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr2	220147767	rs3821038	C	T	2384.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr2	220147847	rs3821039	G	A	5445.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr2	220159894	rs59726321	G	A	1963.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr2	220162054	rs17847405	G	A	7126.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:2,252:0.99:254
chr2	220168616	rs2271594	C	T	3857.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr2	220172576	rs7591986	A	C	1813.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr2	220173905	rs57623838	C	T	15746.77	.	AC=2;AF=1.00;AN=2;DB;DP=659;set=Intersection	GT:AD:AF:DP	1/1:1,636:1.00:637
chr2	220174056	rs6736979	T	C	2641.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr2	220193917	rs3731895	C	T	3365.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr2	220194247	rs3832109	A	AATT	1408.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	220195446	rs6707009	C	G	739.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	220197207	rs2048737	T	C	1022.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	220197321	rs2385405	C	T	3199.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr2	220197388	rs2385404	C	A	3568.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr2	220197492	rs2385402	C	G	2292.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr2	220197929	.	CTT	C	383.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.205;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=2.884;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.44;ReadPosRankSum=1.453;SOR=0.160;set=HC	GT:AD:AF:DP	1/1:3,19:0.86:22
chr2	220239534	rs3731904	G	A	874.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	220239561	rs3731905	C	G	1338.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr2	220246218	rs6436148	T	C	5177.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr2	220249299	rs5838737	C	CT	1953.73	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:2,85:0.98:87
chr2	220249329	rs2002892	C	T	1694.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr2	220250147	rs907679	A	G	2572.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr2	220250322	rs878437	C	A	4826.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr2	220250826	rs2271456	G	A	2939.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:2,110:0.98:112
chr2	220250897	rs11352428	AG	A	1259.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr2	220251178	rs2271457	T	C	3384.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr2	220252287	rs138394024	CTCG	C	4769.73	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr2	220264543	rs58721028	C	CAT	5728.73	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr2	220283259	rs1318299	A	G	4178.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr2	220283277	rs2017800	T	C	4917.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr2	220283826	rs907677	T	G	3212.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr2	220285309	rs1058261	C	T	6226.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:2,236:0.99:238
chr2	220285666	rs12920	G	C	9291.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:1,329:1.00:330
chr2	220286142	rs1058284	G	A	4260.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:2,166:0.99:168
chr2	220306413	rs4674398	G	T	1429.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr2	220308581	rs10932805	A	C	1805.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr2	220316579	rs4674399	C	T	1604.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr2	220330642	.	TGTGCGCGC	T	2984.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.027;ClippingRankSum=0.000;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.63;MQRankSum=0.905;QD=33.92;ReadPosRankSum=-1.908;SOR=1.090;set=HC	GT:AD:AF:DP	1/1:3,85:0.97:88
chr2	220330644	.	TGCGCGCGTGTGC	T	2982	.	AC=2;AF=1.00;AN=2;BRF=0.41;FR=1.0000;HP=2;HapScore=1;MGOF=19;MMLQ=24;MQ=63.2;NF=33;NR=27;PP=2982;QD=20;SC=CGTGTGTGTGTGCGCGCGTGT;SbPval=0.51;Source=Platypus;TC=61;TCF=34;TCR=27;TR=60;WE=220330669;WS=220330634;set=Platypus	GT:AD:AF:DP	1/1:1,60:0.98:61
chr2	220330657	rs68012340	GTGCA	G	2959.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.248;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.46;MQRankSum=0.830;QD=34.82;ReadPosRankSum=-0.704;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:3,82:0.96:85
chr2	220330661	.	A	G	1711	.	AC=2;AF=1.00;AN=2;BRF=0.41;FR=1.0000;HP=2;HapScore=1;MGOF=19;MMLQ=24;MQ=62.36;NF=54;NR=28;PP=1711;QD=21.2898928359;SC=GTGTGCGTGCACGTGTGCGTG;SbPval=0.53;Source=Platypus;TC=88;TCF=58;TCR=30;TR=82;WE=220330669;WS=220330634;set=Platypus	GT:AD:AF:DP	1/1:6,82:0.93:88
chr2	220333950	rs10167209	T	C	5868.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.92;SOR=0.936;set=HC	GT:AD:AF:DP	1/1:0,218:1.00:218
chr2	220337196	rs1039897	G	A	699.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	220341935	rs201853159	A	AG	501.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.81;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	220341937	.	G	GGCGGGGCCTGGTACAGCGGC	2178	.	AC=2;AF=1.00;AN=2;BRF=0.17;FR=1.0000;HP=3;HapScore=2;MGOF=2;MMLQ=24;MQ=60.0;NF=2;NR=1;PP=2178;QD=735.0;SC=AGGAGATGAGGCCCTGGCCCC;SbPval=0.32;Source=Platypus;TC=8;TCF=3;TCR=5;TR=3;WE=220341946;WS=220341927;set=Platypus	GT:AD:AF:DP	1/1:5,3:0.38:8
chr2	220341938	.	C	T	59	.	AC=2;AF=1.00;AN=2;BRF=0.17;FR=1.0000;HP=2;HapScore=2;MGOF=2;MMLQ=24;MQ=60.0;NF=2;NR=1;PP=59;QD=31.2570708491;SC=GGAGATGAGGCCCTGGCCCCA;SbPval=0.33;Source=Platypus;TC=8;TCF=7;TCR=1;TR=3;WE=220341946;WS=220341927;set=Platypus	GT:AD:AF:DP	1/1:5,3:0.38:8
chr2	220341938	.	C	CGGGGCCTGGTACAGCGGCT	591.73	.	AC=2;AF=1.00;AN=2;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=49.31;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	220346596	rs3731906	C	T	474.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	220349385	rs62191887	C	A	981.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	220353104	rs875097	A	G	3825.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr2	220356806	rs907146	C	T	9151.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:0,343:1.00:343
chr2	220361265	rs2385541	A	G	838.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	220362899	rs2029251	C	G	8506.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr2	220366953	rs2385539	G	C	1550.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:1,48:0.98:49
chr2	220367115	rs150386940	G	A	10132.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	1/1:3,381:0.99:384
chr2	220371181	rs10932808	T	A	2619.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr2	220379560	rs3731909	C	G	14291.77	.	AC=2;AF=1.00;AN=2;DB;DP=554;set=Intersection	GT:AD:AF:DP	1/1:1,546:1.00:547
chr2	220380125	rs1872858	G	A	1363.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr2	220397811	rs6731344	T	C	2388.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr2	220399951	rs2276643	A	G	2067.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr2	220400063	rs141949099	GT	G	860.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.378;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.69;MQRankSum=0.623;QD=27.77;ReadPosRankSum=1.474;SOR=1.101;set=HC	GT:AD:AF:DP	0/1:4,27:0.87:31
chr2	220400159	.	TTGTG	T	256	.	AC=2;AF=1.00;AN=2;BRF=0.31;FR=1.0000;HP=2;HapScore=2;MGOF=41;MMLQ=23;MQ=53.67;NF=0;NR=6;PP=256;QD=47.5;SC=GTGTATGTGTTTGTGTGTATG;SbPval=1.0;Source=Platypus;TC=6;TCF=0;TCR=6;TR=6;WE=220400170;WS=220400149;set=Platypus	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	220401732	rs3770237	G	A	3839.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:1,144:0.99:145
chr2	220401751	rs2385538	G	A	5241.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:1,197:0.99:198
chr2	220402665	rs6436153	C	A	1247.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.00;SOR=1.358;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr2	220404381	rs1976616	A	G	3591.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr2	220404648	rs1043833	C	T	4028.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr2	220404726	rs1043832	G	A	3100.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr2	220405230	rs6436154	G	A	5946.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:1,215:1.00:216
chr2	220405321	rs6436155	T	C	5795.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:2,219:0.99:221
chr2	220406722	rs3731912	T	C	5589.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr2	220406944	rs7581251	G	A	1716.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr2	220407900	.	T	G	32.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.668;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=42.037;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.94;ReadPosRankSum=0.390;SOR=5.131;set=HC	GT:AD:AF:DP	0/1:23,12:0.34:35
chr2	220407918	rs10932810	G	T	1037.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	220409101	.	T	G	12033.77	.	AC=2;AF=1.00;AN=2;DP=453;set=Intersection	GT:AD:AF:DP	1/1:6,439:0.99:445
chr2	220409701	rs10932811	C	T	2870.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:1,102:0.99:103
chr2	220412256	rs8179770	T	C	5406.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr2	220413661	rs12996466	C	T	1136.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr2	220414016	rs6436156	C	T	6034.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.05;SOR=1.525;set=HC	GT:AD:AF:DP	1/1:0,137:1.00:137
chr2	220414019	rs13023533	T	C	6002.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.48;SOR=1.539;set=HC	GT:AD:AF:DP	1/1:0,132:1.00:132
chr2	220415595	rs146790993	GGA	G	5303.73	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr2	220415646	rs1043582	T	C	2140.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr2	220415752	rs6745782	C	T	540.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	220416164	rs6761575	T	C	384.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	220416570	rs4672931	C	T	2416.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr2	220416591	rs4672932	C	T	1746.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr2	220416803	rs4672933	A	T	5317.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr2	220416942	rs34490902	G	C	3177.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr2	220417228	rs60549465	G	T	2791.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr2	220417266	rs59332477	C	T	3753.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr2	220419236	rs10932813	T	C	3723.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr2	220419339	rs10932814	T	C	3902.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:2,148:0.99:150
chr2	220420956	rs10932816	A	G	3260.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr2	220421417	rs1983210	C	G	5445.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr2	220421456	rs1983211	C	A	4085.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr2	220422029	rs55873563	G	A	3101.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr2	220422400	rs2278200	C	G	1547.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr2	220422774	rs2278201	A	G	5682.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr2	220427996	rs11904583	T	C	1797.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr2	220428381	rs2303543	A	T	8400.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:2,310:0.99:312
chr2	220430203	rs1039898	C	T	9871.77	.	AC=2;AF=1.00;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	1/1:0,359:1.00:359
chr2	220431919	rs4674412	A	G	1489.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr2	220432709	rs2292360	A	T	10279.77	.	AC=2;AF=1.00;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	1/1:4,382:0.99:386
chr2	220435034	rs10180675	A	G	17447.77	.	AC=2;AF=1.00;AN=2;DB;DP=642;set=Intersection	GT:AD:AF:DP	1/1:1,639:1.00:640
chr2	220435375	rs1061399	G	A	5251.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:2,189:0.99:191
chr2	220439330	rs116399602	G	A	827.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	220462640	rs681747	G	T	5420.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:1,205:1.00:206
chr2	220466199	rs620698	G	T	2910.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr2	220466344	rs11405075	G	GT,GTT	1153.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.730;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=17.22;ReadPosRankSum=-0.176;SOR=0.865;set=HC	GT:AD:AF:DP	1/2:6,42,19:0.63,0.28:67
chr2	220471116	rs633200	C	G	8520.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr2	220473355	rs673951	G	A	3285.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr2	220476443	rs627530	C	T	9355.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:0,343:1.00:343
chr2	220476645	rs581547	T	C	5651.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr2	220479312	rs624773	T	C	4538.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr2	220480639	rs640807	T	C	1457.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr2	220480693	rs665845	G	C	1267.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	220494118	rs597306	A	C	2445.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr2	220495167	rs612078	A	C	1476.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr2	220500423	rs589767	A	G	5729.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.76;SOR=0.895;set=HC	GT:AD:AF:DP	1/1:0,128:1.00:128
chr2	220500426	rs639214	A	G	5778.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.45;SOR=0.929;set=HC	GT:AD:AF:DP	1/1:0,130:1.00:130
chr2	220502137	rs621515	C	T	1285.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	220502367	rs635311	A	C	9403.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:0,347:1.00:347
chr2	220505265	rs684428	T	C	12082.77	.	AC=2;AF=1.00;AN=2;DB;DP=455;set=Intersection	GT:AD:AF:DP	1/1:3,448:0.99:451
chr2	220521312	rs146352286	G	A	3217.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr2	220586474	.	CT	C	62.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.059;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=1.603;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.51;ReadPosRankSum=0.639;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:15,10:0.40:25
chr2	222301357	rs3213844	T	C	5381.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr2	222320427	rs2288627	G	A	3318.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr2	222321225	rs6718949	C	T	599.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	222431689	.	G	GGAAGAAGAAGAAGAAGAAGAA	710.73	.	AC=2;AF=1.00;AN=2;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.70;QD=50.77;SOR=2.985;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	222435035	rs200647532	TCC	T	187.87	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr2	222435048	rs2710504	A	G	196.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr2	222437136	rs11381414	A	AG	220.77	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	223065753	.	TAC	T	225.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.608;ClippingRankSum=0.000;DP=181;ExcessHet=3.0103;FS=1.851;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.28;ReadPosRankSum=-0.446;SOR=0.928;set=HC	GT:AD:AF:DP	0/1:154,23:0.13:177
chr2	223161606	rs13405641	C	A	747.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:2,27:0.93:29
chr2	223161624	rs12694578	A	G	1601.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr2	223161889	rs12623857	A	G	2830.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr2	223162024	rs6754024	T	G	763.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	223423362	rs4674664	A	G	8507.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr2	223436607	rs7185	C	T	1340.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:1,54:0.98:55
chr2	223436860	rs3768976	A	G	315.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	223493435	rs2019357	G	A	3818.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.120;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=3.647;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=43.40;ReadPosRankSum=1.406;SOR=0.718;set=HC	GT:AD:AF:DP	1/1:1,87:0.99:88
chr2	223493440	rs34167083	G	A	3964.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.475;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=3.397;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=42.18;ReadPosRankSum=1.094;SOR=0.538;set=HC	GT:AD:AF:DP	1/1:1,93:0.99:94
chr2	223498167	rs7340227	T	C	289.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:5,14:0.74:19
chr2	223498173	.	C	A	139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.592;ClippingRankSum=0.000;DP=19;ExcessHet=3.0103;FS=2.199;MLEAC=1;MLEAF=0.500;MQ=59.03;MQRankSum=-2.348;QD=7.36;ReadPosRankSum=-0.895;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:14,5:0.26:19
chr2	223498189	.	G	A	190.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.621;ClippingRankSum=0.000;DP=17;ExcessHet=3.0103;FS=2.077;MLEAC=1;MLEAF=0.500;MQ=57.64;MQRankSum=-2.421;QD=11.22;ReadPosRankSum=-1.387;SOR=1.256;set=HC	GT:AD:AF:DP	0/1:11,6:0.35:17
chr2	223498191	.	T	C	187.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.057;ClippingRankSum=0.000;DP=17;ExcessHet=3.0103;FS=2.077;MLEAC=1;MLEAF=0.500;MQ=57.64;MQRankSum=-2.421;QD=11.05;ReadPosRankSum=-1.387;SOR=1.256;set=HC	GT:AD:AF:DP	0/1:11,6:0.35:17
chr2	223499077	rs13410038	C	T	1001.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	223520905	rs2166652	G	C	3359.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr2	223520978	rs2044537	A	G	1366.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr2	223780921	rs12623448	G	A	235.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	223781017	rs60362808	AT	A	1116.73	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr2	223785504	rs6739824	T	C	1798.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:1,57:0.98:58
chr2	223785740	rs6756323	A	G	9012.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:2,345:0.99:347
chr2	223785846	rs6728234	G	A	2549.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr2	223787559	rs11891410	G	A	1127.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr2	223787691	rs10932978	G	A	818.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	223793471	rs1550419	C	T	680.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.55;SOR=2.049;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	223793480	rs1550420	C	T	680.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.38;SOR=1.911;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	223799207	rs935030	C	T	1141.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr2	223806189	rs35090606	C	CT	815.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.516;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=4.144;MLEAC=1;MLEAF=0.500;MQ=60.43;MQRankSum=0.923;QD=11.17;ReadPosRankSum=1.461;SOR=0.287;set=HC	GT:AD:AF:DP	0/1:18,55:0.75:73
chr2	223806194	rs1550426	C	T	2179.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.403;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.41;MQRankSum=0.407;QD=28.68;ReadPosRankSum=-0.875;SOR=0.604;set=HC	GT:AD:AF:DP	1/1:3,73:0.96:76
chr2	223917812	rs10201907	T	C	3185.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr2	223918080	rs10189762	C	G	8192.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr2	224640803	rs59118867	C	CAA	16826.73	.	AC=2;AF=1.00;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	1/1:2,391:0.99:393
chr2	224702305	rs3738961	G	C	559.78	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:2,23:0.92:25
chr2	224743373	rs571111	C	T	5678.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:2,204:0.99:206
chr2	224743591	rs602675	C	T	3371.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr2	224743652	rs547234	A	G	1194.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr2	224744701	rs516849	A	G	1549.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr2	224749579	rs7355685	T	C	128.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.619;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=65.64;MQRankSum=2.100;QD=16.10;ReadPosRankSum=0.792;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:2,6:0.75:8
chr2	224758906	rs625150	C	T	4757.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr2	224760494	rs597349	G	A	648.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	224763816	rs530065	C	T	2977.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr2	224765894	rs604990	G	A	2396.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr2	224770780	rs622896	C	T	282.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	224777094	rs541712	T	C	6913.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr2	224777105	rs113054269	G	GTGAT	6207.73	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr2	224844919	rs729631	C	G	1197.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr2	224862821	rs3795879	C	T	9231.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	1/1:0,341:1.00:341
chr2	224862842	rs12457	A	G	9553.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:0,360:1.00:360
chr2	224863090	rs10170379	C	T	2433.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr2	224866694	.	C	CT	92.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.032;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;FS=16.561;MLEAC=1;MLEAF=0.500;MQ=60.50;MQRankSum=1.742;QD=2.81;ReadPosRankSum=-0.312;SOR=0.010;set=HC	GT:AD:AF:DP	0/1:22,11:0.33:33
chr2	225368321	rs3738951	A	G	1942.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr2	225434445	rs10498163	A	G	826.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	225449893	.	GGGCGGC	G	671.73	.	AC=2;AF=1.00;AN=2;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=63.68;QD=41.98;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	225630435	rs1045653	C	T	3569.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr2	225633812	rs3754624	T	C	783.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	225665074	rs1560859	G	A	1045.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr2	225668717	rs141021252	ATG	A	153.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.102;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.26;ReadPosRankSum=-0.018;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:54,14:0.21:68
chr2	225688061	rs16866194	T	G	823.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	225719781	rs145044043	G	GACAC,GACACAC	2791.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.07;QD=41.67;SOR=1.508;set=HC	GT:AD:AF:DP	1/2:0,16,51:0.24,0.76:67
chr2	225781670	rs13013616	T	C	1926.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr2	225796151	rs9808089	C	A	502.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	225848579	rs375205	T	C	5618.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr2	225875158	rs590233	A	C	564.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr2	226273490	rs2048935	T	C	968.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	226273689	rs2048936	T	C	6279.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr2	226447735	rs3828256	C	T	5759.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:2,206:0.99:208
chr2	226447844	rs6436570	G	A	1209.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr2	226491770	rs3748993	A	C	5886.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr2	227773354	rs74659334	G	GAC	461.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	227773466	rs3820928	T	C	2027.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr2	227779191	rs3820927	C	A	787.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	227807202	rs6436641	G	T	1458.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr2	227872182	rs2228557	G	A	2932.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr2	227872995	rs2228555	T	C	4313.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr2	227873028	rs13419076	A	G	2845.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr2	227874957	rs4423583	C	T	1681.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr2	227877037	rs10188770	G	A	2915.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr2	227886773	rs3752895	A	G	4707.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr2	227886925	rs3752896	C	T	3695.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:1,137:0.99:138
chr2	227892619	rs2228556	C	T	1825.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr2	227892720	rs2229813	C	T	2914.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr2	227895125	rs1917127	A	G	1724.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr2	227896652	rs13423714	C	G	1879.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr2	227896886	rs2229812	C	T	4591.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:4,194:0.98:198
chr2	227896976	rs10203363	C	T	3321.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:1,120:0.99:121
chr2	227897076	rs10179756	A	G	781.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	227912331	rs2272200	G	A	1500.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr2	227914625	rs2272202	T	C	300.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	227914655	rs2272203	C	G	866.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	227914975	rs2251223	T	G	1285.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr2	227915832	rs1800517	G	A	4911.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr2	227916039	rs2894626	T	C	377.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	227917240	rs3769644	C	G	887.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	227917270	rs3769643	T	C	466.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	227922104	rs7567789	T	C	1320.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.03;SOR=3.407;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	227922109	rs7567796	T	A	1376.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.72;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	227922454	rs2141829	G	A	1752.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr2	227922470	rs2141828	T	C	1455.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr2	227924817	rs10653430	G	GAAAAA	130.87	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.17;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr2	227925097	rs6436650	C	T	603.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	227927189	rs35717623	GT	G	825.73	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:6,54:0.90:60
chr2	227947053	rs10187611	C	G	692.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	227954599	rs2229814	G	A	2392.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.01;SOR=0.829;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr2	227967601	rs11274738	ACAATATTTCAGCAATAGGGAAAG	A	3040.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.147;ClippingRankSum=0.000;DB;DP=249;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.04;MQRankSum=0.000;QD=20.41;ReadPosRankSum=0.517;SOR=0.463;set=HC	GT:AD:AF:DP	1/1:4,145:0.97:149
chr2	227967830	rs10707643	GA	G	723.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:1,39:0.97:40
chr2	227968553	rs7602059	A	C	931.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	227973095	rs7600536	A	T	852.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	227973410	rs55741079	C	A	2776.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr2	227973623	rs12475686	A	G	3321.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr2	227974113	rs6436654	A	G	7831.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:1,301:1.00:302
chr2	227974191	rs6436655	A	G	3456.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr2	228102723	rs13424243	G	C	3597.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr2	228104760	rs7579991	C	T	3300.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr2	228109626	rs113428834	T	TG	1280.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.742;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.30;MQRankSum=0.303;QD=17.79;ReadPosRankSum=-0.886;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:4,68:0.94:72
chr2	228109784	rs6750210	C	T	889.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	228111435	rs10178458	T	C	4022.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr2	228111600	rs10168566	G	T	3128.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.46;SOR=1.483;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr2	228111604	rs10168567	G	T	3071.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.17;SOR=1.542;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr2	228111651	rs10192026	A	G	649.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	228112186	rs4321358	A	G	2661.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr2	228113175	rs6436669	A	G	2750.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr2	228121101	rs55703767	G	T	3430.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr2	228142038	rs59353048	GAA	G	496.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.397;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=3.680;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=0.555;QD=17.13;ReadPosRankSum=1.738;SOR=0.916;set=HC	GT:AD:AF:DP	1/1:8,21:0.72:29
chr2	228144706	rs6729152	G	T	1720.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr2	228145543	rs6436671	C	T	3467.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr2	228146991	.	AATATAT	A,AAT	1228.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.119;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=38.40;ReadPosRankSum=1.626;SOR=0.843;set=HC	GT:AD:AF:DP	1/2:1,12,19:0.38,0.59:32
chr2	228149107	rs6436672	A	G	1113.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	228154095	rs7593281	C	T	523.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	228158418	rs7569636	T	C	2123.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr2	228158648	rs7608999	G	C	427.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	228159063	rs6436675	T	C	765.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	228159660	rs35803812	GT	G	498.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.685;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=0.635;QD=9.24;ReadPosRankSum=-1.047;SOR=0.504;set=HC	GT:AD:AF:DP	0/1:10,44:0.81:54
chr2	228194570	rs6706656	G	A	1780.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.08;SOR=0.840;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr2	228194639	rs11384091	T	TA	286.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.381;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=17.92;ReadPosRankSum=0.868;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:1,15:0.94:16
chr2	228197368	rs4500938	A	G	3086.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr2	228204929	rs4420693	C	T	2445.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr2	228204982	rs4442987	C	T	3319.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr2	228207625	rs6738078	G	A	2203.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr2	228220528	rs12478005	T	C	774.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:1,29:0.97:30
chr2	228356364	rs11289047	GT	G	267.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.212;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=0.885;QD=7.24;ReadPosRankSum=0.805;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:12,25:0.68:37
chr2	228373404	rs11464376	A	AT	265.70	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:8,22:0.73:30
chr2	228399480	rs7588620	T	C	1067.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr2	228416498	rs7598597	C	T	661.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	228416712	rs13426457	A	G	14400.77	.	AC=2;AF=1.00;AN=2;DB;DP=568;set=Intersection	GT:AD:AF:DP	1/1:1,552:1.00:553
chr2	228476140	rs2176186	C	T	2737.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr2	228476253	rs2138402	C	G	2802.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr2	228493313	rs77355360	G	T	2766.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr2	228560800	rs11334205	GA	G	5864.73	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:2,263:0.99:265
chr2	228565656	rs11694828	G	A	1842.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr2	228567111	rs71039629	AT	A	271.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.371;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.40;MQRankSum=0.535;QD=13.59;ReadPosRankSum=-0.348;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:1,19:0.95:20
chr2	228680153	rs34834265	CT	C	115.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.521;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=2.518;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.24;ReadPosRankSum=-0.689;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:66,27:0.29:93
chr2	228767618	rs2949014	T	C	1648.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr2	228767631	rs2946931	G	T	2014.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr2	228776996	rs3748862	T	C	2152.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr2	228783479	rs1533960	C	A	8594.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chr2	228883029	rs3811515	A	C	4103.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr2	228883309	rs138604650	G	C	4218.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr2	228883721	rs3811514	T	C	4678.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr2	228886413	rs11292511	TG	T	2496.73	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr2	228973660	rs7561798	A	G	3960.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:1,139:0.99:140
chr2	228973723	rs11374866	C	CT	431.75	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.520;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.99;ReadPosRankSum=0.349;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:8,28:0.78:36
chr2	229035351	rs12618108	T	G	1060.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.26;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr2	230092986	rs5839314	C	CA	661.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	230096893	rs55691132	A	T	959.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr2	230135527	rs1227013	C	T	726.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr2	230135711	rs67686611	G	GC	3136.73	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr2	230271780	rs7562609	A	G	756.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	230282624	rs6760224	G	A	217.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	230453214	rs11458391	G	GA	1131.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.148;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.59;MQRankSum=0.735;QD=17.96;ReadPosRankSum=-1.535;SOR=1.073;set=HC	GT:AD:AF:DP	1/1:6,57:0.90:63
chr2	230655733	rs722268	C	T	1817.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr2	230663443	rs6749045	A	C	560.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	230663576	rs6720868	C	T	3726.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr2	230668858	rs13018957	T	C	5890.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:2,226:0.99:228
chr2	230668968	rs4972915	G	A	3488.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr2	230668982	rs4973229	T	G	2717.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr2	230701806	rs62190441	C	T	570.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr2	230705516	rs34481385	TA	T	913.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.298;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=1.107;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=0.531;QD=10.27;ReadPosRankSum=-1.309;SOR=0.877;set=HC	GT:AD:AF:DP	0/1:23,66:0.74:89
chr2	230744570	rs479492	C	T	214.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	230914766	rs6748654	T	C	913.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	230923648	rs9750739	C	G	177.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.22;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	231042802	rs2241525	C	T	4932.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr2	231050569	rs2114591	G	A	984.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	231050715	rs3948464	A	G	8738.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	1/1:0,338:1.00:338
chr2	231072709	rs1365776	C	T	3650.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr2	231076032	rs3769837	G	T	706.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	231076289	rs3820974	T	G	3691.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr2	231077725	rs1129411	A	G	1346.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr2	231077911	rs7601190	A	C	186.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	231120255	rs55829350	CG	C	363.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:1,15:0.94:16
chr2	231149108	rs4972946	G	A	1186.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr2	231175763	rs78116662	G	A	3005.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr2	231176040	rs139570354	G	A	462.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.386;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=7.038;MLEAC=1;MLEAF=0.500;MQ=45.65;MQRankSum=-0.873;QD=7.59;ReadPosRankSum=2.264;SOR=0.973;set=HC	GT:AD:AF:DP	0/1:36,25:0.41:61
chr2	231226218	rs11275282	G	GTCATGTGTAACCC	727.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	231226488	rs11891724	C	T	4543.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr2	231248324	rs55793821	G	C	431.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:1,15:0.94:16
chr2	231254919	rs17332171	C	T	1416.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr2	231256812	rs7559665	A	G	7070.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:2,269:0.99:271
chr2	231258218	rs7563909	A	T	1558.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr2	231258309	rs72495174	T	A	780.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.92;SOR=1.688;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	231258322	rs72996292	A	G	635.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	231261620	rs6732940	G	A	6367.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;MQ=59.94;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr2	231266252	rs371373398	G	A	141.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=28.38;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr2	231266526	rs149348058	G	A	217.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.85;QD=24.20;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	231282534	rs35969967	C	CT	138.77	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	231309139	rs55637456	A	T	1308.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:3,50:0.94:53
chr2	231327220	rs75519436	G	A	3531.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:1,133:0.99:134
chr2	231330899	.	C	CAAAAAA	184.87	.	AC=2;AF=1.00;AN=2;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.97;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr2	231331694	rs1678159	A	G	591.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	231331701	rs3214547	A	AG	582.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	231331799	rs1649869	T	C	2705.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr2	231331896	rs1050224	G	A	5973.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr2	231334495	rs372197214	TA	T	77.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.198;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=7.708;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.01;ReadPosRankSum=-0.110;SOR=1.003;set=HC	GT:AD:AF:DP	0/1:59,18:0.23:77
chr2	231337960	rs1615190	C	T	2884.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr2	231363252	.	TAA	T,TA	706.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.928;ClippingRankSum=0.000;DP=63;ExcessHet=3.0103;FS=5.482;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=15.04;ReadPosRankSum=-0.019;SOR=0.072;set=HC	GT:AD:AF:DP	1/2:4,12,31:0.26,0.66:47
chr2	231376029	.	G	A	2399.77	.	AC=2;AF=1.00;AN=2;DP=89;set=Intersection	GT:AD:AF:DP	1/1:2,84:0.98:86
chr2	231406680	rs836237	T	C	4513.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr2	231406846	rs10199013	G	A	1211.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	231407519	rs6717269	C	T	1996.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr2	231407663	rs9288668	C	T	4421.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr2	231738168	rs2289235	G	A	2736.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr2	231738263	rs2289234	C	T	5734.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.78;SOR=0.771;set=HC	GT:AD:AF:DP	1/1:0,131:1.00:131
chr2	231738269	rs2289233	G	A	5659.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.92;SOR=0.725;set=HC	GT:AD:AF:DP	1/1:0,126:1.00:126
chr2	231738318	rs3816150	T	C	2271.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr2	231740276	rs2289231	A	G	952.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	231860848	rs6722863	A	G	1020.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr2	231902316	rs186173488	T	C	302.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	231902471	rs190787545	C	G	91.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.76;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr2	231902926	rs116101137	C	A	129.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	231921586	rs12469096	G	C	1189.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr2	231944373	rs2303353	A	T	528.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.18;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	231949946	rs2303357	G	A	2502.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr2	232025952	rs35533383	T	TA	245.84	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.472;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=2.935;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.29;ReadPosRankSum=-0.426;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:4,16:0.80:20
chr2	232029738	.	TTATATATATTTATATATATATATATATATATATATATATATATATATATATATA	T	1741.73	.	AC=2;AF=1.00;AN=2;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr2	232030510	rs2303351	C	A	1118.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr2	232030555	rs2303350	G	A	2557.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr2	232030861	rs2303349	A	G	684.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	232035429	rs6749	G	A	1510.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr2	232072796	rs112353881	ATTTG	A	1731.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.26;QD=43.29;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr2	232072912	rs11558174	T	C	5060.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr2	232073106	rs12465438	G	A	2288.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr2	232087474	rs1626450	AT	GA	1794.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr2	232121172	rs202122259	C	CA	198.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.246;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=1.950;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=0.521;QD=1.40;ReadPosRankSum=0.797;SOR=0.454;set=HC	GT:AD:AF:DP	0/1:108,34:0.24:142
chr2	232225535	rs35889244	C	CG	5287.73	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:1,162:0.99:163
chr2	232260537	rs4972989	T	G	290.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	232317402	rs11295750	CA	C	5570.73	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr2	232317955	rs75332703	G	A	818.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	232320856	rs150234462	G	GA	782.50	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:7,42:0.86:49
chr2	232321956	rs7598759	C	T	4569.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:1,166:0.99:167
chr2	232322829	rs6712148	T	C	406.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	232325692	rs12996154	A	C	2228.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr2	232326801	rs2595514	A	T	7511.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr2	232326873	rs147456242	TTC	T	4189.73	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr2	232378231	rs6750795	T	C	6062.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:2,235:0.99:237
chr2	232389744	rs3752762	A	G	3491.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr2	232390151	rs3752763	A	G	1955.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:1,71:0.99:72
chr2	232458443	rs10933378	T	C	8025.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr2	232790053	rs5268	C	T	1614.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr2	232879671	rs723044	C	T	2724.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr2	232888856	rs896990	T	G	503.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	232952143	rs35104431	CT	C	955.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.223;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=1.795;MLEAC=2;MLEAF=1.000;MQ=60.15;MQRankSum=0.411;QD=14.26;ReadPosRankSum=-1.008;SOR=0.357;set=HC	GT:AD:AF:DP	1/1:7,60:0.90:67
chr2	232995569	.	T	TA	92.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.222;ClippingRankSum=0.000;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.09;ReadPosRankSum=-0.421;SOR=0.524;set=HC	GT:AD:AF:DP	0/1:67,18:0.21:85
chr2	233199107	rs75782436	C	T	5744.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:2,228:0.99:230
chr2	233201443	rs113002914	A	G	1601.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr2	233243660	rs2014448	T	C	5698.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr2	233243981	rs13026692	A	T	7153.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:2,267:0.99:269
chr2	233244586	rs2853374	C	G	2819.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr2	233245090	rs2260307	A	G	2745.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:2,97:0.98:99
chr2	233245141	rs2260309	T	C	3243.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:1,121:0.99:122
chr2	233273504	rs183793479	T	G	244.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.83;QD=30.60;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	233274145	rs2090543	G	C	3436.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr2	233310297	rs796887	T	C	381.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.25;QD=25.45;SOR=1.911;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	233310369	rs790045	T	C	492.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.12;QD=24.64;SOR=1.127;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr2	233310423	rs814220	C	T	560.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.23;QD=24.38;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	233310491	rs809327	C	T	103.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.40;QD=20.78;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr2	233323177	rs2003780	T	C	2214.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr2	233344991	rs2741279	T	G	5021.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr2	233345249	rs1190432	C	T	1021.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr2	233346027	rs746379	C	G	828.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr2	233346662	rs909432	A	C	1461.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:1,48:0.98:49
chr2	233348005	rs2742077	G	T	2977.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr2	233349588	rs1529874	G	A	8569.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr2	233349610	rs76735188	G	C	8883.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:4,331:0.99:335
chr2	233350000	rs2573246	C	G	1806.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr2	233385396	rs1550094	G	A	4575.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr2	233386229	rs2853444	T	C	3777.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr2	233387635	rs733603	A	G	3093.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr2	233388311	rs733602	C	T	743.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	233388813	rs2741299	T	G	2939.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr2	233389167	rs58091792	G	C	997.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr2	233389918	rs2853447	A	G	3074.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr2	233390937	rs2245601	A	G	2194.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:1,85:0.99:86
chr2	233391463	rs2278478	A	G	2200.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:2,78:0.97:80
chr2	233391965	rs4973537	A	G	575.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.34;QD=23.99;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr2	233392020	rs113930536	A	AAAAG	599.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.757;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.88;MQRankSum=0.000;QD=20.68;ReadPosRankSum=1.014;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:4,25:0.86:29
chr2	233400074	rs2767	A	G	2627.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:2,97:0.98:99
chr2	233404294	rs11674608	C	G	625.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	233404334	rs140146282	C	CGGGCTGGCT	1446.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	233404590	rs12996322	G	C	2016.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr2	233408190	rs34697564	A	AC	2797.73	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:9,110:0.92:119
chr2	233408220	rs10714586	AG	A	5052.73	.	AC=2;AF=1.00;AN=2;DB;DP=174;MQ=60.12;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr2	233408239	rs2573206	C	G	8456.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr2	233408283	rs13018423	C	T	9278.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	1/1:4,337:0.99:341
chr2	233414341	rs4973540	C	T	876.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	233415978	rs11899983	T	C	6115.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr2	233421284	rs3830645	CT	C	4007.73	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr2	233429144	rs10603391	GTATTT	G	1997.73	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr2	233498431	rs200118999	T	G	260.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	233498669	rs2276557	G	T	3581.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr2	233502984	rs13029754	A	G	2560.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr2	233536926	rs11684420	T	C	2045.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr2	233537125	rs11550699	A	G	4222.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:1,155:0.99:156
chr2	233599904	rs11555646	A	C	4317.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:2,162:0.99:164
chr2	233626325	.	G	A	859.77	.	AC=2;AF=1.00;AN=2;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	233633460	rs1801251	G	A	2573.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr2	233641083	rs737027	G	C	3442.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr2	233677041	.	CT	C	57.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.956;ClippingRankSum=0.000;DP=58;ExcessHet=3.0103;FS=2.687;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.09;ReadPosRankSum=1.779;SOR=1.123;set=HC	GT:AD:AF:DP	0/1:38,15:0.28:53
chr2	233723163	rs10177	G	A	2278.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr2	233740822	rs200671292	C	T	1504.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr2	233744130	rs58821056	GCC	G	70.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.903;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=2.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.05;ReadPosRankSum=0.857;SOR=1.506;set=HC	GT:AD:AF:DP	0/1:10,4:0.29:14
chr2	233757697	rs895432	A	G	5630.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr2	233834975	rs4973588	A	G	2101.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr2	233880271	rs60652209	A	G	3092.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr2	233899126	rs2233391	C	A	10935.77	.	AC=2;AF=1.00;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	1/1:4,403:0.99:407
chr2	233925491	rs4246649	A	G	458.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	233990412	rs55913569	C	T	4113.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr2	234054873	rs1135173	G	A	12367.77	.	AC=2;AF=1.00;AN=2;DB;DP=473;set=Intersection	GT:AD:AF:DP	1/1:0,461:1.00:461
chr2	234070171	rs28605534	G	C	577.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	234070190	rs28609111	G	A	647.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	234070233	rs28576692	T	C	1567.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr2	234072626	rs141642539	T	C	1096.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr2	234078056	rs11386687	AC	A	4534.73	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:1,115:0.99:116
chr2	234078582	rs10754947	G	A	1549.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr2	234079551	rs10681979	CA	C	117.87	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.933;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=8.817;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.61;ReadPosRankSum=0.315;SOR=2.985;set=HC	GT:AD:AF:DP	0/1:6,15:0.71:21
chr2	234085792	rs13007032	A	C	942.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	234094360	.	TAAA	T	82.50	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.303;ClippingRankSum=-0.000;DP=16;ExcessHet=3.0103;FS=2.430;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.35;ReadPosRankSum=-0.608;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:7,6:0.46:13
chr2	234107070	rs7569827	G	A	3947.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr2	234112649	rs7609436	T	C	1205.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr2	234113396	rs33926881	T	TTG	3416.74	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:8,99:0.93:107
chr2	234178624	.	CTT	C,CT	1245.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.157;ClippingRankSum=0.000;DP=108;ExcessHet=3.0103;FS=1.104;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=12.33;ReadPosRankSum=-1.659;SOR=0.474;set=HC	GT:AD:AF:DP	1/2:15,36,50:0.36,0.50:101
chr2	234181593	rs2289475	G	C	5136.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr2	234197717	rs4663136	C	G	854.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	234201767	rs78930461	A	G	884.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	234224637	rs112149360	C	T	765.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr2	234227523	rs2304777	A	G	5195.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr2	234235820	rs2304773	C	T	4566.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:2,176:0.99:178
chr2	234238254	rs745498	T	G	2235.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr2	234240268	rs139840815	C	A	3062.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:1,118:0.99:119
chr2	234247508	rs13427703	C	G	1725.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr2	234247627	rs2241874	T	C	284.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	234294561	rs3075537	T	TTC	12096.73	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr2	234294791	rs838716	G	C	1099.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.72;SOR=2.494;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr2	234347091	rs3214826	TA	T	36.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.568;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.31;ReadPosRankSum=-0.687;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:20,8:0.29:28
chr2	234368715	.	TA	T	258.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.625;ClippingRankSum=0.000;DP=59;ExcessHet=3.0103;FS=2.325;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=1.149;QD=4.62;ReadPosRankSum=0.388;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:31,25:0.45:56
chr2	234368935	rs147134923	G	A	7701.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:1,280:1.00:281
chr2	234438246	rs56828432	C	CT	4562.73	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr2	234438354	rs12692193	C	T	768.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr2	234442437	rs11332355	CA	C	343.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:1,20:0.95:21
chr2	234449316	rs2167884	G	A	5085.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr2	234449462	rs1545525	T	C	1112.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr2	234450822	rs1901812	T	C	336.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	234457900	rs3965793	T	A	510.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.54;SOR=2.531;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr2	234469664	rs6753062	T	C	863.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	234545039	rs149250772	A	AT	259.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.121;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.29;MQRankSum=-2.022;QD=11.29;ReadPosRankSum=-1.006;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:5,18:0.78:23
chr2	234580453	rs3832043	AT	A	1113.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr2	234590527	rs7586110	T	G	2853.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr2	234590616	rs7577677	C	A	3334.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr2	234590970	rs17868323	T	G	3726.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.69;QD=45.45;SOR=0.961;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr2	234590974	rs17863778	CG	AA	3732.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=59.69;QD=45.52;SOR=0.902;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr2	234591205	rs11692021	T	C	16566.77	.	AC=2;AF=1.00;AN=2;DB;DP=639;set=Intersection	GT:AD:AF:DP	1/1:3,632:1.00:635
chr2	234598991	rs7563561	T	G	4755.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr2	234599089	rs7608175	C	G	12110.77	.	AC=2;AF=1.00;AN=2;DB;DP=460;set=Intersection	GT:AD:AF:DP	1/1:4,453:0.99:457
chr2	234599234	.	G	GA	129.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.392;ClippingRankSum=0.000;DP=251;ExcessHet=3.0103;FS=0.759;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.000;QD=0.65;ReadPosRankSum=0.735;SOR=0.558;set=HC	GT:AD:AF:DP	0/1:165,35:0.17:200
chr2	234599296	rs45615240	T	C	2699.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr2	234601669	rs6759892	T	G	3428.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr2	234601965	rs1105880	A	G	4710.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr2	234602191	rs2070959	A	G	6108.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr2	234602202	rs1105879	A	C	6423.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr2	234626287	rs869283	G	A	1208.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr2	234627937	rs2011404	T	C	9242.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;MQ=59.98;set=Intersection	GT:AD:AF:DP	1/1:0,338:1.00:338
chr2	234637803	rs3821242	T	C	1480.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr2	234637853	rs6706232	G	A	2032.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr2	234637912	rs6431625	T	C	2751.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr2	234638249	rs7574296	A	G	10435.77	.	AC=2;AF=1.00;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	1/1:0,391:1.00:391
chr2	234652347	rs13009407	C	G	8376.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr2	234663649	rs10929301	C	G	9577.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	1/1:2,350:0.99:352
chr2	234668879	rs34983651	C	CAT,CATAT	323.27	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=14;set=Intersection	GT:AF:DP	1/1:0.92:13
chr2	234688036	rs6431631	C	A	943.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr2	234707341	rs1500479	T	C	2521.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr2	234707460	rs11563247	G	C	3464.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr2	234708428	rs13013882	G	A	2091.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr2	234708570	rs11563069	G	A	2487.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr2	234708629	rs13018934	G	A	1431.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr2	234708720	rs2041652	T	G	1270.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr2	234713812	rs2041651	G	T	1990.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr2	234717669	rs10803663	A	G	1862.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr2	234720734	rs988344	A	C	1190.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr2	234725502	rs726016	T	C	2036.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr2	234727250	rs719419	T	G	1802.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr2	234727478	rs6759919	A	G	1070.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr2	234727986	rs6754859	C	T	4146.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:1,158:0.99:159
chr2	234728078	rs1500480	T	C	4315.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr2	234750542	rs3732215	G	C	5718.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr2	234750831	rs3806589	T	C	1972.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr2	234752638	rs7583713	C	T	675.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	234753008	rs169925	G	A	1160.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr2	234754273	rs2302156	T	C	1546.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:1,54:0.98:55
chr2	234754506	rs2302155	G	A	6561.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr2	234756239	rs17862902	TG	CA	4880.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr2	234761225	rs2286430	C	T	8248.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr2	234761355	rs554699	G	A	5736.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr2	234762480	rs626110	A	T	4966.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:2,189:0.99:191
chr2	234763226	rs503913	C	T	8692.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:1,327:1.00:328
chr2	234846198	rs1019103	G	A	970.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr2	234875433	rs12185625	A	G	2271.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr2	234878261	rs6760498	G	A	666.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr2	234888643	rs6745987	T	C	977.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr2	234888721	rs6736916	C	T	2722.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr2	234890391	rs6708995	G	T	873.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	234892127	rs4663995	T	C	346.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	235950187	rs1469375	T	C	13596.77	.	AC=2;AF=1.00;AN=2;DB;DP=521;set=Intersection	GT:AD:AF:DP	1/1:2,512:1.00:514
chr2	235951819	rs3795962	A	G	3119.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr2	235962513	rs10929083	C	T	889.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	236433331	rs11689907	T	C	2257.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr2	236433390	rs10207027	G	A	733.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	236761396	rs13006916	C	T	3470.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr2	236817336	.	CTT	C,CT	2062.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.214;ClippingRankSum=0.000;DP=168;ExcessHet=3.0103;FS=0.914;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.19;MQRankSum=0.588;QD=12.89;ReadPosRankSum=1.121;SOR=0.575;set=HC	GT:AD:AF:DP	1/2:21,48,91:0.30,0.57:160
chr2	236923361	rs35361765	C	CT	1552.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.555;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=21.27;ReadPosRankSum=0.848;SOR=0.741;set=HC	GT:AD:AF:DP	1/1:3,70:0.96:73
chr2	237146643	rs72060634	TGTG	T	1222.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	237149941	rs6756597	C	T	2464.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr2	237150166	rs2015983	A	C	2209.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:1,87:0.99:88
chr2	237997099	rs191687553	C	G	846.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:1,34:0.97:35
chr2	237997387	.	G	T	894.77	.	AC=2;AF=1.00;AN=2;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	237997436	.	C	T	368.77	.	AC=2;AF=1.00;AN=2;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	238243292	rs1131296	G	A	1038.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr2	238243464	rs2270669	C	G	2893.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr2	238244963	rs6728818	A	G	3583.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:2,136:0.99:138
chr2	238249630	rs4433949	C	T	6344.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr2	238258814	rs3790993	C	G	9294.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:0,338:1.00:338
chr2	238259675	rs3790995	G	A	1389.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr2	238261112	rs4663726	GC	AA	7640.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr2	238266248	rs7577192	G	C	438.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	238266633	rs4663730	G	A	714.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	238267058	rs4663731	G	A	2898.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:2,110:0.98:112
chr2	238267602	.	G	A	2067.77	.	AC=2;AF=1.00;AN=2;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr2	238271786	rs11287247	GC	G	63.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.876;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=6.154;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.55;ReadPosRankSum=-0.469;SOR=1.872;set=HC	GT:AD:AF:DP	0/1:9,5:0.36:14
chr2	238305211	rs1553032	C	T	394.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	238419543	rs71887544	CGT	C	43.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.331;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=3.126;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.50;ReadPosRankSum=-0.287;SOR=1.262;set=HC	GT:AD:AF:DP	0/1:77,10:0.11:87
chr2	238661870	rs3832061	GT	G	677.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:2,35:0.95:37
chr2	238667501	rs3215064	G	GA	1040.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr2	238688244	rs1151798	A	G	615.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	238730522	rs72987141	G	A	2060.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr2	238820048	rs7582777	G	A	618.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	238894784	rs66771814	CT	C	225.50	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.329;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.74;ReadPosRankSum=-0.201;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:3,18:0.86:21
chr2	238896494	rs59213280	C	CA	193.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.862;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=6.064;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.45;ReadPosRankSum=2.399;SOR=0.595;set=HC	GT:AD:AF:DP	0/1:10,16:0.62:26
chr2	238896495	rs72981250	T	A	43.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.607;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=6.064;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.68;ReadPosRankSum=-2.322;SOR=1.535;set=HC	GT:AD:AF:DP	0/1:16,10:0.38:26
chr2	238903310	rs10203101	C	T	1867.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr2	238912120	rs10929262	A	C	4302.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:2,161:0.99:163
chr2	238939370	rs11679080	C	T	3116.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr2	238969711	rs147010013	G	A	787.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	238972827	rs821480	T	C	903.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	238990388	rs3210400	G	A	7039.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:1,262:1.00:263
chr2	238991796	rs2278742	C	T	6227.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr2	239002480	rs72316729	CTTG	C	7868.73	.	AC=2;AF=1.00;AN=2;DB;DP=182;MQ=60.18;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr2	239005637	.	C	T	1096.77	.	AC=2;AF=1.00;AN=2;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr2	239007755	rs68159827	CATT	C	1547.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;MQ=60.29;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr2	239007806	rs1054640	A	G	2489.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr2	239007850	rs1054641	T	A	3434.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr2	239007991	rs15787	T	A	1810.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr2	239009336	rs61744770	G	A	816.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	239009384	rs62196013	C	T	493.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	239010455	rs5839683	GGAA	G	706.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	239010577	rs1562333	G	C	2730.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr2	239010719	rs36066915	T	C	2897.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr2	239016539	rs935415	C	G	9469.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	1/1:0,351:1.00:351
chr2	239025523	rs11903074	T	C	4102.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr2	239036416	rs12692214	T	C	10126.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.42;SOR=1.336;set=HC	GT:AD:AF:DP	1/1:0,228:1.00:228
chr2	239036423	rs62197371	C	A	10008.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.88;SOR=1.284;set=HC	GT:AD:AF:DP	1/1:0,223:1.00:223
chr2	239037273	rs72989009	C	A	1537.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr2	239039183	rs73102303	G	A	4965.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr2	239039637	rs4663845	T	C	2129.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr2	239039779	rs73102306	G	A	4791.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr2	239039896	rs10182906	G	C	8368.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,318:1.00:318
chr2	239040187	rs12692215	T	C	7078.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr2	239040218	rs73102309	G	A	5710.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr2	239040343	rs73102311	G	A	3331.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr2	239050142	rs73102336	G	A	2996.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr2	239051550	rs935411	T	C	1252.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr2	239053685	rs13013945	A	C	3531.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr2	239054504	rs11674140	G	T	5619.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr2	239059484	rs7605194	T	C	4449.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr2	239073046	rs6760421	C	T	4897.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr2	239075812	rs3795905	C	T	5171.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr2	239075935	rs3820817	A	G	5596.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr2	239082166	rs3832064	G	GC	5294.73	.	AC=2;AF=1.00;AN=2;DB;DP=152;MQ=60.07;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr2	239092474	rs2305173	C	T	2147.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:2,80:0.98:82
chr2	239093788	rs6431588	T	C	1095.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr2	239102856	rs3795903	A	G	3355.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr2	239103574	rs35393292	G	A	4134.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr2	239103603	rs7558210	C	G	3079.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr2	239112344	rs113428548	G	A	261.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	239148535	rs1047589	G	C	2304.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr2	239148970	rs56294817	C	A	2799.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:1,105:0.99:106
chr2	239229204	rs368022925	GC	G	999.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:2,34:0.94:36
chr2	239229372	rs13398676	C	A	4737.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr2	239237953	rs12464423	G	T	2577.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:2,100:0.98:102
chr2	239242719	rs5839695	G	GT	301.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=15.88;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	239247174	rs73090911	A	G	106.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr2	239307245	rs571820	A	G	418.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	239976697	rs113824469	T	TTATTA	982.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	239990521	.	A	AGTGCAAGCCAGCAAGCCCCACGACACTTGCTTAGTGAGAGTGAGTCACG	11447.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.169;ClippingRankSum=0.000;DP=382;ExcessHet=3.0103;FS=13.671;MLEAC=2;MLEAF=1.000;MQ=58.99;MQRankSum=0.790;QD=43.36;ReadPosRankSum=0.571;SOR=0.425;set=HC	GT:AD:AF:DP	1/1:4,260:0.98:264
chr2	239990592	.	TG	GA	2947	.	AC=2;AF=1.00;AN=2;BRF=0.56;FR=1.0000;HP=1;HapScore=1;MGOF=34;MMLQ=24;MQ=46.08;NF=36;NR=70;PP=2947;QD=20;SC=CAAGCCCCACTGCACTTGCTT;SbPval=0.72;Source=Platypus;TC=130;TCF=50;TCR=80;TR=106;WE=239990601;WS=239990582;set=Platypus	GT:AD:AF:DP	1/1:24,106:0.82:130
chr2	240003870	rs1063639	G	A	4705.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr2	240016488	rs62189551	A	G	1361.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr2	240024654	rs6543510	G	A	680.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	240029736	rs7585225	T	C	766.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	240036959	rs79199572	C	T	4859.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr2	240055901	rs2278778	G	A	1038.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr2	240066417	rs2290087	A	G	6025.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr2	240066526	rs2290088	T	C	2037.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr2	240078587	rs5839723	GAC	G	1937.73	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr2	240083528	rs3791515	G	A	10855.77	.	AC=2;AF=1.00;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	1/1:0,409:1.00:409
chr2	240083731	rs3828216	C	T	2697.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr2	240085403	rs11124182	C	A	625.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	240085674	rs13010577	C	T	841.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	240111477	rs531993	A	T	1193.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	240158529	rs3842554	A	AAGAAAATCAAAGATCCTT	1086.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	240219762	.	G	A	1929.77	.	AC=2;AF=1.00;AN=2;DP=80;set=Intersection	GT:AD:AF:DP	1/1:1,75:0.99:76
chr2	240323977	rs114089109	C	T	4612.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:3,175:0.98:178
chr2	240500413	rs6543554	A	G	8374.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:1,313:1.00:314
chr2	240504878	rs6719279	C	T	4874.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr2	240702216	rs11884577	C	G	2201.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr2	240721384	rs2898872	C	A	2559.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr2	240900691	rs4077387	C	G	3411.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr2	240922822	rs958960	C	A	799.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	240954079	rs11693245	G	A	3376.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr2	240957243	rs6746937	C	T	4987.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr2	240957801	rs10804402	G	A	913.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	240958129	rs4149540	C	T	917.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	240961728	rs2083411	T	C	10478.77	.	AC=2;AF=1.00;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	1/1:0,395:1.00:395
chr2	240961852	rs7596788	A	G	4154.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr2	240964714	rs11541494	G	C	2533.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.95;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr2	240981179	rs6731916	T	C	1624.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr2	240981375	rs6732185	T	A	9119.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:1,350:1.00:351
chr2	240982059	.	CCGTGGGTG	C	1318.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.439;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=6.274;MLEAC=1;MLEAF=0.500;MQ=59.72;MQRankSum=5.149;QD=24.88;ReadPosRankSum=-0.061;SOR=0.312;set=HC	GT:AD:AF:DP	0/1:2,51:0.96:53
chr2	240982068	.	AAGAGGCATGGACGAAGGGCCGTGGGTGAAGAGGCATGGACGAAGGGCC	A	1316.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.967;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=2.186;MLEAC=1;MLEAF=0.500;MQ=59.73;MQRankSum=4.282;QD=23.51;ReadPosRankSum=-0.621;SOR=0.524;set=HC	GT:AD:AF:DP	0/1:3,53:0.95:56
chr2	240982116	.	C	A	1270	.	AC=2;AF=1.00;AN=2;BRF=0.35;FR=1.0000;HP=1;HapScore=1;MGOF=25;MMLQ=27;MQ=57.21;NF=22;NR=30;PP=1270;QD=25.0917540874;SC=GACGAAGGGCCGTGGGTGAAG;SbPval=0.62;Source=Platypus;TC=55;TCF=24;TCR=31;TR=52;WE=240982124;WS=240982106;set=Platypus	GT:AD:AF:DP	1/1:3,52:0.95:55
chr2	240982228	rs10439373	C	T	2225.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr2	240984833	rs13389099	C	G	4679.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:1,165:0.99:166
chr2	240985099	rs150098707	G	A	534.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=29.71;SOR=5.892;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	240985347	rs13030992	G	A	1994.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.76;QD=28.10;SOR=1.451;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr2	240985511	rs10933560	A	G	1051.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr2	241066280	rs4292120	C	T	5670.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr2	241073170	rs747741	C	T	1282.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr2	241073450	rs3749078	C	T	2233.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr2	241075809	rs13406410	C	T	2458.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr2	241375527	rs2352823	C	T	750.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	241390827	rs34412658	C	T	1195.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr2	241392491	rs4268920	A	G	2217.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr2	241392666	rs115136771	G	A	154.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;MQ=56.15;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	241395353	rs12695019	A	G	619.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	241395500	rs71428439	A	G	1694.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.251;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=39.41;ReadPosRankSum=-0.888;SOR=0.843;set=HC	GT:AD:AF:DP	1/1:2,41:0.95:43
chr2	241395503	rs2292832	T	C	1694.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.097;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=40.35;ReadPosRankSum=-0.853;SOR=0.902;set=HC	GT:AD:AF:DP	1/1:2,40:0.95:42
chr2	241395538	rs71428440	T	G	662.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.548;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.09;ReadPosRankSum=1.015;SOR=0.465;set=HC	GT:AD:AF:DP	0/1:3,27:0.90:30
chr2	241396969	rs11680576	T	C	1991.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr2	241397325	rs140545467	CG	C	75.25	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=63.51;QD=25.08;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr2	241401741	rs1042829	C	T	4068.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr2	241403014	rs881029	T	C	1435.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr2	241405400	rs10700206	C	CGTG	727.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	241405479	rs1126920	C	T	1656.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr2	241405528	rs2228331	A	G	3036.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr2	241405608	rs1042841	A	G	4341.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:1,163:0.99:164
chr2	241405864	rs11892254	C	T	1639.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr2	241531737	rs2975762	A	G	1520.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr2	241533845	rs2975763	T	C	1035.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr2	241536525	rs73001807	A	G	744.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	241537421	rs3749166	G	A	4587.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr2	241537617	rs58715822	TC	T	2527.73	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr2	241538074	rs2975766	A	G	6100.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr2	241538229	rs2975767	A	G	1198.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr2	241555784	rs12052926	G	T	1250.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr2	241555991	rs1509	G	T	1731.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr2	241558397	rs6437353	G	A	3267.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr2	241558547	rs7582275	G	A	2301.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr2	241569329	rs2975785	A	G	4604.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr2	241569585	rs35155396	C	T	7234.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:2,267:0.99:269
chr2	241569849	rs12468377	C	T	5905.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:2,218:0.99:220
chr2	241570092	rs12468453	C	T	12186.77	.	AC=2;AF=1.00;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	1/1:0,442:1.00:442
chr2	241570127	rs12468485	C	T	14083.77	.	AC=2;AF=1.00;AN=2;DB;DP=523;set=Intersection	GT:AD:AF:DP	1/1:0,519:1.00:519
chr2	241570249	rs3749172	A	C	8533.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chr2	241570391	rs2975786	A	G	984.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	241619674	rs202221536	C	T	143.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.36;QD=23.97;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	241619686	rs200371460	C	A	47.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.00;QD=15.76;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr2	241621799	rs201917032	GC	G	728.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.32;QD=38.35;SOR=2.948;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	241622195	rs184458523	T	C	1184.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr2	241622209	rs4081908	T	C	970.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr2	241627928	rs1560619	A	G	4931.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr2	241631476	rs4328629	C	G	2537.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr2	241659368	rs6437368	C	A	607.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	241663019	rs2043252	C	T	288.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	241676446	.	C	T	2550.77	.	AC=2;AF=1.00;AN=2;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr2	241680633	rs4414678	G	T	1228.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr2	241680802	rs56024577	G	A	2258.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:1,85:0.99:86
chr2	241706166	.	TCACA	T	173.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.664;ClippingRankSum=0.000;DP=37;ExcessHet=3.0103;FS=3.873;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.99;ReadPosRankSum=1.788;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:22,7:0.24:29
chr2	241813453	rs33958047	G	A	9376.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:1,350:1.00:351
chr2	241815308	rs12464426	A	G	5958.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:2,235:0.99:237
chr2	241816871	rs11894759	G	T	10441.77	.	AC=2;AF=1.00;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	1/1:0,371:1.00:371
chr2	241827696	rs4675869	A	G	561.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	241827798	rs11899555	T	C	1626.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr2	241828012	rs6708304	T	C	7461.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr2	241828034	rs6707568	A	G	7257.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr2	241830944	rs10171053	G	T	6179.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr2	241830969	rs10171067	G	A	7635.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr2	241831005	rs10195453	C	T	7856.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:1,276:1.00:277
chr2	241831264	rs6737320	G	A	13282.77	.	AC=2;AF=1.00;AN=2;DB;DP=496;set=Intersection	GT:AD:AF:DP	1/1:1,494:1.00:495
chr2	241831296	rs6709469	C	G	11856.77	.	AC=2;AF=1.00;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	1/1:2,435:1.00:437
chr2	241831471	rs6709742	CA	TG	1572.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr2	241834770	rs4293565	A	G	320.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	241834907	rs4359646	C	T	3373.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr2	241834944	rs4468809	T	C	4628.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr2	241835379	rs12105122	G	A	1120.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr2	241835432	rs10933514	G	A	822.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	241859255	rs4675790	T	G	806.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	241865156	rs4675847	T	C	3798.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:1,145:0.99:146
chr2	241870520	.	G	A	2604.77	.	AC=2;AF=1.00;AN=2;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr2	241870593	rs34408974	CG	C	907.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	241871847	rs34726174	G	A	9013.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:0,335:1.00:335
chr2	241872429	rs145183723	TCCAGGGAGGGGCC	T	2837.73	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr2	241872597	rs4441463	A	G	2868.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr2	241889171	rs12479396	G	A	492.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	241889937	rs4077132	A	G	2383.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr2	241898824	rs10169006	A	G	2251.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr2	241898947	rs10179839	G	T	723.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	241904001	rs11688859	G	C	793.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	241904498	rs10432571	G	C	3079.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr2	241905591	rs13395609	T	C	5577.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:1,202:1.00:203
chr2	241905779	rs12466789	A	G	5291.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.69;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,206:1.00:206
chr2	241974289	rs2074822	G	A	522.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	241976615	rs34203344	CG	C	7126.73	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr2	241979549	.	A	G	750.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.537;ClippingRankSum=0.000;DP=214;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.58;ReadPosRankSum=-0.133;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:161,49:0.23:210
chr2	241979550	rs7571117	T	C	6373.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr2	241987554	rs7590504	G	A	793.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	241991029	rs10206324	A	G	1755.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr2	242002828	rs7581709	C	T	1470.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr2	242003558	rs34771867	T	C	3552.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr2	242004199	rs2286319	G	C	7581.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:4,281:0.99:285
chr2	242004219	rs11464431	T	TG	13714.73	.	AC=2;AF=1.00;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	1/1:0,367:1.00:367
chr2	242007465	rs5839780	AC	A	1416.73	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	242009273	rs13000549	G	T	1907.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:1,61:0.98:62
chr2	242011151	rs6760731	A	G	4342.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr2	242011330	rs6746124	C	A	13172.77	.	AC=2;AF=1.00;AN=2;DB;DP=510;set=Intersection	GT:AD:AF:DP	1/1:4,503:0.99:507
chr2	242028741	rs1062748	A	G	3304.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:1,116:0.99:117
chr2	242029737	rs61234509	G	A	3593.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:2,140:0.99:142
chr2	242033770	rs2302047	T	A	2209.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr2	242054718	rs61748659	G	A	7385.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr2	242062130	rs2302049	C	G	7110.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:2,279:0.99:281
chr2	242065601	rs75080735	C	T	3429.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr2	242066314	rs2240542	T	C	7376.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:1,275:1.00:276
chr2	242099961	rs2017989	C	T	1179.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr2	242129524	rs34069570	G	A	3606.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr2	242142737	rs1179530	T	C	1390.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr2	242157353	.	CG	C	155.80	.	AC=2;AF=1.00;AN=2;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.67;QD=25.97;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	242157573	.	C	CAGCGGGGGCGCGCAGGGGCGG	232.80	.	AC=2;AF=1.00;AN=2;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=77.60;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr2	242168976	rs15129	T	C	1799.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr2	242176019	rs2305073	T	C	3465.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr2	242203776	rs71933081	C	CA	127.80	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.858;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=3.424;MLEAC=1;MLEAF=0.500;MQ=59.39;MQRankSum=1.150;QD=10.65;ReadPosRankSum=0.259;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:3,9:0.75:12
chr2	242203916	rs11891776	A	C	1570.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr2	242206956	rs35334418	C	T	6986.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr2	242259614	rs6745662	G	A	2737.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr2	242263803	.	CTTT	C,CTT	69.86	.	AC=1,0;AF=0.500,0.00;AN=2;DP=8;set=Intersection	GT:AF:DP	0/1:0.75:4
chr2	242274489	rs56390510	G	C	320.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	242283071	rs6750169	C	T	1064.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr2	242283094	rs6707518	A	G	1875.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr2	242287487	rs12619647	T	G	1059.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	242289663	rs3217007	C	CATT	1799.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	242312477	rs201276541	G	GT	180.92	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.216;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=4.301;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=12.06;ReadPosRankSum=-0.765;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:2,13:0.87:15
chr2	242374238	rs56352948	G	A	376.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	242374358	rs16843671	T	C	1431.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr2	242405021	rs2240482	C	T	9560.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	1/1:0,344:1.00:344
chr2	242415523	rs73006397	C	T	733.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	242433348	rs2018761	A	G	1547.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr2	242438899	rs140997042	G	C	1457.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr2	242443377	rs35172632	G	A	4687.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr2	242606036	rs6709768	G	C	8137.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr2	242607483	rs7565540	GC	TT	2854.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr2	242610773	rs7601000	T	A	6716.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr2	242611050	rs1130910	C	G	2453.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr2	242612909	rs1130906	A	G	198.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	242613089	rs7943	A	G	1759.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr2	242613133	rs7740	T	G	1300.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr2	242615462	rs5860	T	C	952.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	242617792	rs4076640	A	G	967.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr2	242618050	rs1131195	A	G	5136.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr2	242622192	rs35052478	A	AG	372.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	242622326	rs4347866	T	C	798.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	242625413	rs62191287	A	T	1976.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:1,72:0.99:73
chr2	242648545	rs7595652	C	T	4471.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.72;SOR=1.755;set=HC	GT:AD:AF:DP	1/1:0,100:1.00:100
chr2	242648549	rs7568408	G	A	4663.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.00;SOR=1.819;set=HC	GT:AD:AF:DP	1/1:0,106:1.00:106
chr2	242680355	.	C	CA	563.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.924;ClippingRankSum=0.000;DP=180;ExcessHet=3.0103;FS=2.245;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.24;ReadPosRankSum=0.640;SOR=0.508;set=HC	GT:AD:AF:DP	0/1:122,52:0.30:174
chr2	242695497	rs62192024	T	C	1941.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr2	242750231	rs35392728	T	G	1071.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr2	242750460	rs34748986	T	C	4574.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr2	242755465	rs34241734	C	G	695.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	242755599	rs66482163	G	A	2081.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr2	242756720	.	A	G	1768	.	AC=2;AF=1.00;AN=2;BRF=0.47;FR=1.0000;HP=1;HapScore=1;MGOF=46;MMLQ=25;MQ=58.78;NF=53;NR=23;PP=1768;QD=23.7206738493;SC=CCCGTCCCAGACAAATCCCTC;SbPval=0.52;Source=Platypus;TC=76;TCF=53;TCR=23;TR=76;WE=242756728;WS=242756710;set=Platypus	GT:AD:AF:DP	1/1:0,76:1.00:76
chr2	242757411	rs36111671	C	T	7602.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:1,289:1.00:290
chr2	242758203	rs2293763	T	C	8001.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr2	242758326	rs2293761	G	A	5203.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr2	242758475	rs2293759	A	G	1529.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr2	242793273	rs2227981	A	G	3065.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr2	242793559	rs6705653	T	C	1553.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr2	242813124	rs13016102	T	C	4913.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr2	242813241	rs28392509	C	T	1472.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr2	242813276	rs62193136	C	T	845.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	242814009	rs7420371	G	A	3898.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:4,150:0.97:154
chr2	242839363	rs4973668	G	C	5233.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr2	242839614	rs13025557	T	G	2501.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr3	239313	rs35603824	C	CG	619.73	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:34,30:0.47:64
chr3	239347	rs111462933	C	CG	1235.73	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:61,49:0.45:110
chr3	239555	.	CT	C,CTTT	1441.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.276;ClippingRankSum=0.000;DP=205;ExcessHet=3.0103;FS=2.319;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=9.55;ReadPosRankSum=-0.847;SOR=0.901;set=HC	GT:AD:AF:DP	1/2:17,73,61:0.48,0.40:151
chr3	361274	.	C	CA	78.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.214;ClippingRankSum=-0.000;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.37;ReadPosRankSum=0.286;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:9,9:0.50:18
chr3	386520	rs1499046	C	T	1581.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr3	391100	rs13060847	A	G	8362.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.06;SOR=1.361;set=HC	GT:AD:AF:DP	1/1:0,298:1.00:298
chr3	402273	rs5845966	C	CT	643.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.989;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=5.341;MLEAC=1;MLEAF=0.500;MQ=60.44;MQRankSum=0.308;QD=15.33;ReadPosRankSum=0.750;SOR=3.407;set=HC	GT:AD:AF:DP	1/1:5,37:0.88:42
chr3	403288	rs9824311	G	A	3849.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.83;SOR=3.003;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr3	403297	rs9839027	C	A	4215.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.16;SOR=2.765;set=HC	GT:AD:AF:DP	1/1:0,100:1.00:100
chr3	403308	rs9824442	G	A	3552.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr3	403345	rs9846775	A	G	5993.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr3	404771	rs4684390	C	T	2415.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr3	417994	rs930237	A	G	4612.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr3	439963	rs6442827	A	G	8466.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr3	440028	rs6771714	T	C	7059.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr3	440088	rs6771803	T	A	3920.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr3	443399	rs62227277	T	C	854.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:36,38:0.51:74
chr3	447069	rs11705894	C	T	991.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr3	1214847	rs17034784	A	C	1363.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:45,57:0.56:102
chr3	1215013	rs7632166	A	C	5332.77	.	AC=1;AF=0.500;AN=2;DB;DP=480;set=Intersection	GT:AD:AF:DP	0/1:220,255:0.54:475
chr3	1262474	rs2013828	T	C	3335.77	.	AC=1;AF=0.500;AN=2;DB;DP=469;set=Intersection	GT:AD:AF:DP	0/1:281,184:0.40:465
chr3	1269489	rs146722842	T	G	1853.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:103,86:0.46:189
chr3	1269763	rs60719807	A	G	647.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:32,29:0.48:61
chr3	1413903	rs3852033	T	A	1014.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:35,41:0.54:76
chr3	1415195	rs3765098	C	T	1617.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr3	1415811	rs138076631	TAAAAC	T	1673.73	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:48,45:0.48:93
chr3	1424718	rs2291101	G	A	2119.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:135,101:0.43:236
chr3	1424745	rs4684146	C	T	2556.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:156,116:0.43:272
chr3	1424850	rs2291100	T	G	3587.77	.	AC=1;AF=0.500;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	0/1:217,182:0.46:399
chr3	1427566	rs72997748	C	T	1602.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:49,69:0.58:118
chr3	1427625	rs9820933	C	T	718.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:17,28:0.62:45
chr3	1442968	rs34787015	GAATT	G	2098.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr3	1444243	rs13326014	A	G	2798.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr3	2777622	rs1554198	A	G	9003.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:0,340:1.00:340
chr3	3030223	rs13068264	C	A	4652.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr3	3072464	rs17657457	C	G	3662.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr3	3076259	rs112317965	C	T	5651.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr3	3076401	rs6790908	C	T	13198.77	.	AC=2;AF=1.00;AN=2;DB;DP=503;set=Intersection	GT:AD:AF:DP	1/1:0,493:1.00:493
chr3	3076443	rs6803232	A	G	9386.77	.	AC=2;AF=1.00;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	1/1:2,348:0.99:350
chr3	3076515	rs17657771	A	G	3055.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:2,103:0.98:105
chr3	3078814	rs17599126	T	C	16573.77	.	AC=2;AF=1.00;AN=2;DB;DP=616;set=Intersection	GT:AD:AF:DP	1/1:2,611:1.00:613
chr3	3080509	rs7648232	C	T	980.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr3	3080527	rs163543	C	T	1241.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr3	3081825	rs339285	T	C	9379.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	1/1:2,354:0.99:356
chr3	3085436	.	G	A	3941.77	.	AC=1;AF=0.500;AN=2;DP=322;set=Intersection	GT:AD:AF:DP	0/1:144,166:0.54:310
chr3	3115478	rs163897	T	C	6827.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr3	3115514	rs340807	C	A	5205.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr3	3133791	rs7647903	G	A	2068.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:91,97:0.52:188
chr3	3137155	rs11389765	A	AT	1106.73	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:3,55:0.95:58
chr3	3139383	rs334802	C	A	823.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr3	3139957	rs2290610	T	C	2270.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:132,109:0.45:241
chr3	3143267	rs6771148	G	C	1815.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr3	3144519	rs13097407	A	G	1301.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:74,63:0.46:137
chr3	3170792	rs334773	C	T	4305.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr3	3170910	rs334772	A	G	1184.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr3	3171460	rs334769	C	T	4280.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr3	3171502	rs334768	C	A	2614.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:129,126:0.49:255
chr3	3171713	rs113671187	G	GCCTGACT	8289.73	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr3	3179262	rs334767	A	T	1587.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr3	3188016	rs3762760	A	G	670.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:45,27:0.38:72
chr3	3189059	rs1621648	T	C	363.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr3	3189279	rs1705805	A	G	2778.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr3	3189398	rs1669348	A	G	712.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:25,35:0.58:60
chr3	3192524	rs4183	A	ATAAC	2365.73	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:61,58:0.49:119
chr3	3193957	rs1705800	A	C	920.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr3	3194107	rs11414437	G	GA	2538.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.854;ClippingRankSum=0.000;DB;DP=484;ExcessHet=3.0103;FS=1.838;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.53;ReadPosRankSum=-1.058;SOR=0.840;set=HC	GT:AD:AF:DP	0/1:275,184:0.40:459
chr3	3196273	rs11300080	AT	A	782.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:1,37:0.97:38
chr3	3197871	rs1705789	T	C	1816.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr3	3215954	rs1669321	A	G	7218.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr3	3217128	rs11332452	AT	A	132.74	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=14.75;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr3	3221430	rs1672753	C	T	6838.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr3	3886580	rs4685689	A	G	12424.77	.	AC=2;AF=1.00;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	1/1:0,454:1.00:454
chr3	3886721	rs3749350	C	A	6405.77	.	AC=1;AF=0.500;AN=2;DB;DP=576;set=Intersection	GT:AD:AF:DP	0/1:276,295:0.52:571
chr3	3886847	rs3749349	G	C	8375.77	.	AC=1;AF=0.500;AN=2;DB;DP=729;set=Intersection	GT:AD:AF:DP	0/1:352,371:0.51:723
chr3	3886919	rs3749348	C	T	9477.77	.	AC=1;AF=0.500;AN=2;DB;DP=791;MQ=59.99;set=Intersection	GT:AD:AF:DP	0/1:351,432:0.55:783
chr3	3887876	rs2120609	T	C	4978.77	.	AC=1;AF=0.500;AN=2;DB;DP=535;set=Intersection	GT:AD:AF:DP	0/1:283,240:0.46:523
chr3	3887972	rs114810202	C	T	7832.77	.	AC=1;AF=0.500;AN=2;DB;DP=659;set=Intersection	GT:AD:AF:DP	0/1:300,351:0.54:651
chr3	4046763	rs62257623	T	G	564.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:18,23:0.56:41
chr3	4344936	rs221109	T	G	751.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:17,34:0.67:51
chr3	4345033	rs172705	G	A	2951.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:83,133:0.62:216
chr3	4452737	rs813811	G	A	4915.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:4,179:0.98:183
chr3	4461569	rs711667	G	A	842.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr3	4461698	rs711666	C	T	4424.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:2,164:0.99:166
chr3	4508742	rs2819590	C	T	954.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:40,44:0.52:84
chr3	4562667	rs1038639	T	G	2625.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:92,110:0.54:202
chr3	4687470	rs5846330	G	GCT	2889.73	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:13,88:0.87:101
chr3	4687548	rs4271897	A	G	906.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.598;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=29.25;ReadPosRankSum=-0.728;SOR=1.739;set=HC	GT:AD:AF:DP	1/1:1,30:0.97:31
chr3	4687577	rs4303850	A	G	512.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr3	4693656	rs6442894	C	T	4307.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr3	4693937	rs6442895	G	C	3368.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr3	4694010	rs6442896	A	C	801.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr3	4712413	rs2306875	G	A	3099.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr3	4716811	rs2306877	A	C	3355.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:168,159:0.49:327
chr3	4722956	rs4684438	A	G	3243.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:170,147:0.46:317
chr3	4725619	rs3215005	CA	C	3446.73	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr3	4726947	rs733018	T	G	400.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:22,17:0.44:39
chr3	4732670	rs4685801	G	A	502.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:19,21:0.53:40
chr3	4738774	rs3749382	A	G	891.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:60,39:0.39:99
chr3	4738999	.	GGT	G,GGTGTGT	1647.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=215;set=Intersection	GT:AF:DP	1/2:0.54,0.30:87
chr3	4748193	rs34548572	G	A	584.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:34,27:0.44:61
chr3	4767262	rs7613447	T	C	11049.77	.	AC=2;AF=1.00;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	1/1:0,428:1.00:428
chr3	4774659	rs112777249	C	T	2072.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:75,92:0.55:167
chr3	4776784	rs11920001	A	G	887.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:43,40:0.48:83
chr3	4817057	rs6442905	T	C	11828.77	.	AC=2;AF=1.00;AN=2;DB;DP=467;set=Intersection	GT:AD:AF:DP	1/1:0,451:1.00:451
chr3	4829732	rs13079522	A	G	11853.77	.	AC=2;AF=1.00;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	1/1:0,457:1.00:457
chr3	4842231	rs2291862	C	T	6183.77	.	AC=1;AF=0.500;AN=2;DB;DP=558;set=Intersection	GT:AD:AF:DP	0/1:259,295:0.53:554
chr3	4856005	.	T	G	464.77	.	AC=1;AF=0.500;AN=2;DP=35;set=Intersection	GT:AD:AF:DP	0/1:15,20:0.57:35
chr3	4856180	rs711631	T	C	2797.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr3	4856234	rs901854	G	A	1426.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr3	4856993	rs6442911	C	G	1626.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr3	4859725	rs9844268	G	A	3708.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr3	4867510	rs1051559	A	G	2186.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:109,101:0.48:210
chr3	4872811	.	T	TCACACACA,TCACACACACA	384.73	.	AC=1,0;AF=0.500,0.00;AN=2;DP=92;set=Intersection	GT:AF:DP	0/1:0.47:40
chr3	4872813	rs5018278	T	A	1471.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.417;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=2.684;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=33.45;ReadPosRankSum=2.398;SOR=1.730;set=HC	GT:AD:AF:DP	0/1:5,39:0.89:44
chr3	4872813	.	TCT	ACA	875	.	AC=2;AF=1.00;AN=2;BRF=0.42;FR=1.0000;HP=2;HapScore=2;MGOF=20;MMLQ=26;MQ=58.71;NF=10;NR=30;PP=875;QD=23.2116968716;SC=TCTCTCTCTCTCTCACACACA;SbPval=0.77;Source=Platypus;TC=69;TCF=21;TCR=48;TR=40;WE=4872823;WS=4872780;set=Platypus	GT:AD:AF:DP	1/1:29,40:0.58:69
chr3	4872815	rs5018277	T	A	1988.73	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.52;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:2,51:0.96:53
chr3	4878419	rs80218153	CT	C	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.787;ClippingRankSum=-0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.57;MQRankSum=0.722;QD=1.98;ReadPosRankSum=0.513;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:9,8:0.47:17
chr3	4927281	rs4685841	T	C	972.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:98,50:0.34:148
chr3	4927308	rs6794077	A	G	5344.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr3	4940658	rs72170014	CAGAG	C,CAGAGAGAGAGAGAGAGAG	2082.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=35.30;SOR=2.160;set=HC	GT:AD:AF:DP	1/2:0,43,16:0.73,0.27:59
chr3	4942300	rs3762783	T	C	2856.77	.	AC=1;AF=0.500;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	0/1:202,141:0.41:343
chr3	4942430	rs3762784	G	A	1209.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:70,58:0.45:128
chr3	4942432	rs724135	C	G	1427.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:58,67:0.54:125
chr3	5021403	rs2271566	C	T	7100.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr3	5022961	rs13076468	A	C	2894.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr3	5022981	rs34085319	CT	C	3618.73	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:2,102:0.98:104
chr3	5024415	rs11398309	A	AT	488.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr3	5024771	rs908078	T	C	20716.77	.	AC=2;AF=1.00;AN=2;DB;DP=760;set=Intersection	GT:AD:AF:DP	1/1:4,749:0.99:753
chr3	5214126	rs2270750	G	A	72.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.803;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.28;ReadPosRankSum=-0.842;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:6,4:0.40:10
chr3	5229643	rs144177905	C	T	2133.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:125,102:0.45:227
chr3	5241223	rs377120	C	T	7542.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr3	5241309	rs410509	C	A	12679.77	.	AC=2;AF=1.00;AN=2;DB;DP=483;set=Intersection	GT:AD:AF:DP	1/1:1,475:1.00:476
chr3	5249962	.	G	GT	562.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.035;ClippingRankSum=0.000;DP=239;ExcessHet=3.0103;FS=1.351;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.01;ReadPosRankSum=-1.186;SOR=0.849;set=HC	GT:AD:AF:DP	0/1:133,54:0.29:187
chr3	6828348	rs11924839	A	C	6386.77	.	AC=1;AF=0.500;AN=2;DB;DP=541;set=Intersection	GT:AD:AF:DP	0/1:237,301:0.56:538
chr3	6828364	rs1533434	A	G	13509.77	.	AC=2;AF=1.00;AN=2;DB;DP=525;set=Intersection	GT:AD:AF:DP	1/1:0,521:1.00:521
chr3	6903297	rs3749380	C	T	17100.77	.	AC=2;AF=1.00;AN=2;DB;DP=650;set=Intersection	GT:AD:AF:DP	1/1:0,643:1.00:643
chr3	6903601	rs342034	A	G	5916.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr3	6904812	rs143886923	G	GT	2656.73	.	AC=1;AF=0.500;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	0/1:131,166:0.56:297
chr3	6998144	rs17046460	C	T	1144.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:49,45:0.48:94
chr3	7188116	rs3749448	G	A	625.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:29,29:0.50:58
chr3	7444873	rs138178952	G	C	1759.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:63,79:0.56:142
chr3	7456675	rs712774	C	T	2652.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr3	7494245	.	TTGTG	T,TTG	1351.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=30.72;SOR=1.828;set=HC	GT:AD:AF:DP	1/2:0,8,36:0.18,0.82:44
chr3	7494417	rs2229902	A	T	3058.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:3,114:0.97:117
chr3	7620000	rs76356172	A	G	285.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:11,12:0.52:23
chr3	7620168	rs34373930	A	G	2528.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:177,121:0.41:298
chr3	7620382	rs7614915	C	T	4162.77	.	AC=1;AF=0.500;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	0/1:223,195:0.47:418
chr3	7620789	rs1485175	T	C	3563.77	.	AC=1;AF=0.500;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	0/1:230,180:0.44:410
chr3	7620828	rs1485174	G	A	3654.77	.	AC=1;AF=0.500;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	0/1:210,169:0.45:379
chr3	7621093	rs1485173	T	A	478.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:27,21:0.44:48
chr3	7649591	rs2139187	C	A	1390.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:43,68:0.61:111
chr3	7649747	rs146667493	A	AT	2183.73	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:69,65:0.49:134
chr3	7649819	rs115155482	C	T	566.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:14,24:0.63:38
chr3	8299404	rs145434533	AGAAGGAAGGAAGGAAGGAAGGAAG	A	546.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.350;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=30.37;ReadPosRankSum=2.293;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:4,14:0.78:18
chr3	8299606	rs201757824	AAAGGAAGGAAGG	A	400.73	.	AC=1;AF=0.500;AN=2;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.73;MQRankSum=0.696;QD=28.62;SOR=1.781;set=HC	GT:AD:AF:DP	0/1:3,11:0.79:14
chr3	8496486	rs7651102	GC	AA	455.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.43;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr3	8543713	rs5846598	G	GT	7092.73	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr3	8543757	rs2324625	A	C	3766.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr3	8556617	rs12715649	A	G	6940.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr3	8556784	rs12715650	A	C	3270.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr3	8665360	rs9809581	A	G	2264.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:134,114:0.46:248
chr3	8667896	rs355058	T	C	13223.77	.	AC=1;AF=0.500;AN=2;DB;DP=1125;set=Intersection	GT:AD:AF:DP	0/1:498,618:0.55:1116
chr3	8669367	rs5846608	TG	T	5665.73	.	AC=1;AF=0.500;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	0/1:172,201:0.54:373
chr3	8675318	rs2276801	C	T	848.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:22,37:0.63:59
chr3	8675778	rs11131140	T	C	766.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr3	8676204	rs3774210	A	G	4588.77	.	AC=1;AF=0.500;AN=2;DB;DP=522;set=Intersection	GT:AD:AF:DP	0/1:287,229:0.44:516
chr3	8676945	rs3816911	T	C	2338.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:145,114:0.44:259
chr3	8705555	rs34054872	T	C	6840.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr3	8757311	rs17049469	G	C	1102.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:41,55:0.57:96
chr3	8775457	rs2072583	G	A	926.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:39,35:0.47:74
chr3	8775661	rs1008642	C	T	6583.77	.	AC=1;AF=0.500;AN=2;DB;DP=831;set=Intersection	GT:AD:AF:DP	0/1:489,338:0.41:827
chr3	8784046	rs34044666	C	CA,CAAA	1173.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=2.780;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=7.775;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.13;MQRankSum=0.554;QD=14.86;ReadPosRankSum=2.383;SOR=1.976;set=HC	GT:AD:AF:DP	1/2:17,28,34:0.35,0.43:79
chr3	8787123	rs13060135	G	T	1563.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:40,68:0.63:108
chr3	8787164	rs139242554	AAGCGGGTGGCTTCTGTG	A	3977.73	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:86,102:0.54:188
chr3	8787220	rs13087941	T	C	3286.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:138,154:0.53:292
chr3	8931984	rs656626	A	C	813.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:44,41:0.48:85
chr3	8932189	rs607531	C	T	825.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:61,42:0.41:103
chr3	8943988	rs464302	C	A	566.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:14,22:0.61:36
chr3	8955240	rs430781	T	C	614.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:63,34:0.35:97
chr3	8955389	rs373572	C	T	1751.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:99,89:0.47:188
chr3	8988809	rs689296	C	T	344.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:8,14:0.64:22
chr3	9005078	rs615967	C	T	4317.77	.	AC=1;AF=0.500;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	0/1:220,210:0.49:430
chr3	9027704	rs341785	A	G	2804.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:2,101:0.98:103
chr3	9034558	rs511815	C	T	6283.77	.	AC=1;AF=0.500;AN=2;DB;DP=574;set=Intersection	GT:AD:AF:DP	0/1:265,296:0.53:561
chr3	9036010	rs637172	T	G	3633.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:122,165:0.57:287
chr3	9066853	rs421041	T	C	5621.77	.	AC=1;AF=0.500;AN=2;DB;DP=506;set=Intersection	GT:AD:AF:DP	0/1:237,263:0.53:500
chr3	9069747	rs416685	A	G	3251.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:158,161:0.50:319
chr3	9074617	rs9839715	C	T	391.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:21,17:0.45:38
chr3	9079664	rs884236	A	C	439.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:50,25:0.33:75
chr3	9079714	rs867528	A	G	1420.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:80,71:0.47:151
chr3	9079896	rs884237	T	C	429.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:11,15:0.58:26
chr3	9089254	rs2244864	C	G	5421.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr3	9090944	rs111520352	C	G	702.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:18,25:0.58:43
chr3	9091151	rs610457	C	G	2400.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:126,119:0.49:245
chr3	9099989	rs61747289	A	G	3707.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:138,168:0.55:306
chr3	9102112	.	C	CTTT	658.73	.	AC=2;AF=1.00;AN=2;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.46;QD=36.60;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr3	9102137	rs6775479	G	C	210.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:8,11:0.58:19
chr3	9122948	rs2664089	A	G	8099.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr3	9406661	rs2728949	G	A	731.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:33,30:0.48:63
chr3	9406836	rs1054975	T	C	4190.77	.	AC=1;AF=0.500;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	0/1:195,201:0.51:396
chr3	9407022	rs2648536	T	C	2888.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:108,132:0.55:240
chr3	9408443	rs2648535	A	C	333.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:3,14:0.82:17
chr3	9422210	rs2596916	T	C	1111.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:37,50:0.57:87
chr3	9425911	rs1129170	G	A	1982.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:85,91:0.52:176
chr3	9425944	rs1046788	G	C	2532.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:133,120:0.47:253
chr3	9426224	rs1129174	G	A	910.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:61,41:0.40:102
chr3	9487148	rs2290164	T	C	1004.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:35,43:0.55:78
chr3	9489334	rs3217597	A	ATTTC	3049.73	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:106,76:0.42:182
chr3	9489340	rs200418836	G	A	3188.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:116,92:0.44:208
chr3	9489767	rs2258735	T	C	6021.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr3	9495385	rs2648580	A	G	3390.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:98,152:0.61:250
chr3	9510386	rs372676994	A	G	918.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:38,41:0.52:79
chr3	9514856	rs3915844	G	A	384.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:35,20:0.36:55
chr3	9520152	rs56821826	G	A	265.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:7,11:0.61:18
chr3	9547950	rs2625890	G	C	3226.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.056;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=5.383;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.81;ReadPosRankSum=-0.057;SOR=0.421;set=HC	GT:AD:AF:DP	0/1:102,90:0.47:192
chr3	9547959	rs2625889	C	T	3015.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.875;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=6.146;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.39;ReadPosRankSum=-0.316;SOR=0.363;set=HC	GT:AD:AF:DP	0/1:86,78:0.48:164
chr3	9548004	rs17815563	G	A	896.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:42,42:0.50:84
chr3	9691526	rs11706340	T	C	662.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:28,32:0.53:60
chr3	9692087	rs56310367	G	A	2124.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:124,104:0.46:228
chr3	9710307	rs12493353	T	C	1505.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:93,72:0.44:165
chr3	9727077	rs141919937	C	T	426.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:12,17:0.59:29
chr3	9730284	rs41278545	A	G	612.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:29,27:0.48:56
chr3	9730529	.	G	GT	408.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.705;ClippingRankSum=0.000;DP=474;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=0.000;QD=1.00;ReadPosRankSum=-0.200;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:326,82:0.20:408
chr3	9743398	rs144534173	TGGAG	T	6999.73	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:2,160:0.99:162
chr3	9743494	.	G	A	3422.77	.	AC=1;AF=0.500;AN=2;DP=376;set=Intersection	GT:AD:AF:DP	0/1:196,170:0.46:366
chr3	9757086	rs697820	C	G	4426.77	.	AC=1;AF=0.500;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	0/1:177,196:0.53:373
chr3	9757754	rs708571	G	A	1349.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:57,65:0.53:122
chr3	9758664	rs6765151	A	G	1620.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:88,74:0.46:162
chr3	9768336	rs3868893	C	G	3264.77	.	AC=1;AF=0.500;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	0/1:240,169:0.41:409
chr3	9769008	rs3891072	A	T	4711.77	.	AC=1;AF=0.500;AN=2;DB;DP=543;set=Intersection	GT:AD:AF:DP	0/1:295,242:0.45:537
chr3	9783147	rs696513	A	G	1086.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:38,50:0.57:88
chr3	9799113	rs293795	A	G	1518.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:64,66:0.51:130
chr3	9803126	rs17252807	A	G	478.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:28,24:0.46:52
chr3	9822275	rs3868897	C	T	643.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:30,28:0.48:58
chr3	9829171	rs2290309	G	A	1167.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:34,45:0.57:79
chr3	9829226	rs293786	A	C	3331.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr3	9831112	rs293790	A	G	200.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:24,13:0.35:37
chr3	9831680	rs293791	G	C	1440.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:72,67:0.48:139
chr3	9841989	rs6443266	A	G	1842.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:46,83:0.64:129
chr3	9852059	rs34761997	C	CGAT	4718.73	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr3	9852148	rs9827444	G	A	945.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:19,38:0.67:57
chr3	9854865	rs11708462	A	C	2990.77	.	AC=1;AF=0.500;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	0/1:188,153:0.45:341
chr3	9854913	rs11720113	C	A	2593.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:136,119:0.47:255
chr3	9859456	rs3806672	C	G	2145.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:80,102:0.56:182
chr3	9860274	rs147069178	G	A	216.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:17,11:0.39:28
chr3	9867625	rs3732527	C	T	18122.77	.	AC=2;AF=1.00;AN=2;DB;DP=675;set=Intersection	GT:AD:AF:DP	1/1:0,668:1.00:668
chr3	9868577	rs12490900	A	G	1543.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr3	9870857	rs2290303	G	A	7337.77	.	AC=1;AF=0.500;AN=2;DB;DP=573;set=Intersection	GT:AD:AF:DP	0/1:233,337:0.59:570
chr3	9871030	rs2290305	T	G	4993.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr3	9874670	rs7622954	G	A	2485.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:1,82:0.99:83
chr3	9876301	rs13088594	G	T	12364.77	.	AC=2;AF=1.00;AN=2;DB;DP=451;set=Intersection	GT:AD:AF:DP	1/1:1,444:1.00:445
chr3	9876919	rs1057278	G	A	7418.77	.	AC=1;AF=0.500;AN=2;DB;DP=643;set=Intersection	GT:AD:AF:DP	0/1:290,342:0.54:632
chr3	9876987	rs1057281	G	A	5001.77	.	AC=1;AF=0.500;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	0/1:207,235:0.53:442
chr3	9885022	rs3846165	T	C	3171.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr3	9896351	rs279563	A	G	8327.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chr3	9918811	rs61742367	G	A	2675.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:110,132:0.55:242
chr3	9932337	rs279558	G	C	3000.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr3	9934605	rs279553	T	C	12799.77	.	AC=2;AF=1.00;AN=2;DB;DP=486;set=Intersection	GT:AD:AF:DP	1/1:0,477:1.00:477
chr3	9934753	rs35365817	A	G	4201.77	.	AC=1;AF=0.500;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	0/1:180,200:0.53:380
chr3	9944167	rs279589	G	A	2877.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr3	9944937	rs279588	G	T	2272.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr3	9947864	rs279583	T	C	242.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:17,12:0.41:29
chr3	9947898	rs279582	T	A	427.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:21,19:0.47:40
chr3	9947997	rs279581	C	T	1375.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:66,67:0.50:133
chr3	9951038	rs142612801	TAC	T	1002.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.182;ClippingRankSum=0.000;DB;DP=483;ExcessHet=3.0103;FS=1.734;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=2.214;QD=2.65;ReadPosRankSum=1.560;SOR=0.839;set=HC	GT:AD:AF:DP	0/1:311,68:0.18:379
chr3	9952706	rs279572	A	G	4617.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.554;ClippingRankSum=0.000;DB;DP=457;ExcessHet=3.0103;FS=1.123;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.22;ReadPosRankSum=-2.728;SOR=0.581;set=HC	GT:AD:AF:DP	0/1:224,228:0.50:452
chr3	9952788	rs279571	T	C	5111.77	.	AC=1;AF=0.500;AN=2;DB;DP=494;set=Intersection	GT:AD:AF:DP	0/1:238,247:0.51:485
chr3	9956279	rs455863	G	A	5268.77	.	AC=1;AF=0.500;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	0/1:190,240:0.56:430
chr3	9956894	rs693802	C	T	164.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chr3	9957455	rs1056286	C	T	3683.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:126,170:0.57:296
chr3	9960070	rs708567	C	T	1810.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:76,83:0.52:159
chr3	9962157	rs783494	T	C	3875.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:134,178:0.57:312
chr3	9962767	rs34198416	TATTC	T	926.73	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:29,25:0.46:54
chr3	9962816	rs376511	A	G	355.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:22,17:0.44:39
chr3	9970031	rs279549	A	G	16212.77	.	AC=2;AF=1.00;AN=2;DB;DP=602;set=Intersection	GT:AD:AF:DP	1/1:0,599:1.00:599
chr3	9970158	rs279548	C	T	7164.77	.	AC=1;AF=0.500;AN=2;DB;DP=530;set=Intersection	GT:AD:AF:DP	0/1:210,317:0.60:527
chr3	9970442	rs279547	C	T	387.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:33,17:0.34:50
chr3	9972493	rs279545	G	A	3353.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr3	9975247	rs183956	C	G	10299.77	.	AC=2;AF=1.00;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	1/1:0,357:1.00:357
chr3	9976159	rs279552	A	G	11474.77	.	AC=2;AF=1.00;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	1/1:0,414:1.00:414
chr3	9991388	rs279601	G	C	12665.77	.	AC=2;AF=1.00;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	1/1:0,451:1.00:451
chr3	10018739	.	T	TA	52.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.042;ClippingRankSum=0.000;DP=124;ExcessHet=3.0103;FS=1.068;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.54;ReadPosRankSum=-0.287;SOR=0.479;set=HC	GT:AD:AF:DP	0/1:80,18:0.18:98
chr3	10085035	rs803335	G	T	500.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:14,18:0.56:32
chr3	10088239	rs201770712	G	A	378.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.138;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=3.496;MLEAC=1;MLEAF=0.500;MQ=59.73;MQRankSum=-5.255;QD=2.56;ReadPosRankSum=-0.566;SOR=1.173;set=HC	GT:AD:AF:DP	0/1:129,19:0.13:148
chr3	10088242	rs199726231	G	A	381.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.171;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=2.064;MLEAC=1;MLEAF=0.500;MQ=59.74;MQRankSum=-5.218;QD=2.48;ReadPosRankSum=-0.248;SOR=1.055;set=HC	GT:AD:AF:DP	0/1:134,20:0.13:154
chr3	10088266	rs72492997	G	T	616.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.043;ClippingRankSum=0.000;DB;DP=219;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.19;MQRankSum=-6.262;QD=2.83;ReadPosRankSum=-1.729;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:171,47:0.22:218
chr3	10088299	rs112887807	C	T	1711.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.302;ClippingRankSum=0.000;DB;DP=258;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.53;MQRankSum=-2.644;QD=6.66;ReadPosRankSum=0.598;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:199,58:0.23:257
chr3	10088308	rs72492998	T	C	1724.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.125;ClippingRankSum=0.000;DB;DP=268;ExcessHet=3.0103;FS=0.544;MLEAC=1;MLEAF=0.500;MQ=55.95;MQRankSum=-1.990;QD=6.46;ReadPosRankSum=2.101;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:209,58:0.22:267
chr3	10088343	rs73126218	A	G	821.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.013;ClippingRankSum=0.000;DB;DP=263;ExcessHet=3.0103;FS=0.530;MLEAC=1;MLEAF=0.500;MQ=54.59;MQRankSum=-1.419;QD=3.14;ReadPosRankSum=0.510;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:199,63:0.24:262
chr3	10088404	.	C	T	700.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.027;ClippingRankSum=0.000;DP=133;ExcessHet=3.0103;FS=3.037;MLEAC=1;MLEAF=0.500;MQ=49.34;MQRankSum=-4.260;QD=5.27;ReadPosRankSum=-1.095;SOR=1.026;set=HC	GT:AD:AF:DP	0/1:107,26:0.20:133
chr3	10088407	.	AG	A	648.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.176;ClippingRankSum=0.000;DP=128;ExcessHet=3.0103;FS=3.230;MLEAC=1;MLEAF=0.500;MQ=49.08;MQRankSum=-4.214;QD=5.07;ReadPosRankSum=-0.711;SOR=1.081;set=HC	GT:AD:AF:DP	0/1:104,24:0.19:128
chr3	10088409	rs375350046	TAAG	T	657.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.433;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=3.257;MLEAC=1;MLEAF=0.500;MQ=48.90;MQRankSum=-4.116;QD=5.30;ReadPosRankSum=-0.987;SOR=1.102;set=HC	GT:AD:AF:DP	0/1:100,24:0.19:124
chr3	10088422	rs144167368	C	T	592.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.410;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=3.785;MLEAC=1;MLEAF=0.500;MQ=47.91;MQRankSum=-4.679;QD=5.81;ReadPosRankSum=-1.097;SOR=1.226;set=HC	GT:AD:AF:DP	0/1:81,21:0.21:102
chr3	10088443	rs145517746	C	A	156.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.932;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=48.18;MQRankSum=-3.387;QD=2.70;ReadPosRankSum=2.067;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:50,8:0.14:58
chr3	10088444	rs142624538	A	G	156.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.852;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=48.19;MQRankSum=-3.245;QD=2.85;ReadPosRankSum=1.938;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:47,8:0.15:55
chr3	10088461	rs150415982	T	C	100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.375;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=49.50;MQRankSum=-2.567;QD=2.34;ReadPosRankSum=0.371;SOR=0.470;set=HC	GT:AD:AF:DP	0/1:35,8:0.19:43
chr3	10089723	rs12330369	G	A	1559.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:195,85:0.30:280
chr3	10089738	rs62245508	A	G	1621.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:200,85:0.30:285
chr3	10089749	rs12330599	T	C	1564.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:198,82:0.29:280
chr3	10089772	rs79830642	CA	GG	2653.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.154;ClippingRankSum=0.000;DB;DP=275;ExcessHet=3.0103;FS=3.728;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.97;MQRankSum=-8.305;QD=9.65;ReadPosRankSum=1.872;SOR=0.939;set=HC	GT:AD:AF:DP	0/1:197,78:0.28:275
chr3	10089775	rs75389047	A	G	2656.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.772;ClippingRankSum=0.000;DB;DP=273;ExcessHet=3.0103;FS=2.986;MLEAC=1;MLEAF=0.500;MQ=58.96;MQRankSum=-8.340;QD=9.73;ReadPosRankSum=1.949;SOR=0.899;set=HC	GT:AD:AF:DP	0/1:196,77:0.28:273
chr3	10089815	rs77169020	A	C	1434.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.576;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=2.244;MLEAC=1;MLEAF=0.500;MQ=58.49;MQRankSum=-8.082;QD=8.70;ReadPosRankSum=-0.133;SOR=0.909;set=HC	GT:AD:AF:DP	0/1:121,44:0.27:165
chr3	10089818	rs78988497	C	T	1406.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.219;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=2.297;MLEAC=1;MLEAF=0.500;MQ=58.47;MQRankSum=-8.148;QD=8.63;ReadPosRankSum=-0.309;SOR=0.956;set=HC	GT:AD:AF:DP	0/1:120,43:0.26:163
chr3	10089828	rs77263972	G	A	1358.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.645;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.29;MQRankSum=-8.139;QD=9.31;ReadPosRankSum=-1.531;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:107,39:0.27:146
chr3	10089834	rs74351786	A	T	1101.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.985;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=0.783;MLEAC=1;MLEAF=0.500;MQ=58.19;MQRankSum=-8.029;QD=8.61;ReadPosRankSum=-1.110;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:97,31:0.24:128
chr3	10089841	rs74509181	C	A	831.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.025;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=4.332;MLEAC=1;MLEAF=0.500;MQ=58.01;MQRankSum=-8.023;QD=7.49;ReadPosRankSum=-1.453;SOR=1.170;set=HC	GT:AD:AF:DP	0/1:85,26:0.23:111
chr3	10089852	rs75274508	A	G	583.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:67,20:0.23:87
chr3	10089886	rs73811818	G	T	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.083;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.49;MQRankSum=-6.007;QD=0.73;ReadPosRankSum=-0.742;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:40,6:0.13:46
chr3	10105661	rs369470214	CT	C	770.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.958;ClippingRankSum=0.000;DB;DP=428;ExcessHet=3.0103;FS=19.734;MLEAC=1;MLEAF=0.500;MQ=57.78;MQRankSum=-19.376;QD=1.92;ReadPosRankSum=-5.573;SOR=2.514;set=HC	GT:AD:AF:DP	0/1:351,50:0.12:401
chr3	10109101	rs35888164	A	G	1891.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:124,84:0.40:208
chr3	10128965	.	CTT	C	256.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.468;ClippingRankSum=0.000;DP=116;ExcessHet=3.0103;FS=1.152;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.14;ReadPosRankSum=0.760;SOR=0.929;set=HC	GT:AD:AF:DP	0/1:44,18:0.29:62
chr3	10144526	.	CA	C	148.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.416;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=2.760;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.51;ReadPosRankSum=0.213;SOR=0.199;set=HC	GT:AD:AF:DP	0/1:16,17:0.52:33
chr3	10186447	rs1678593	A	T	215.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.090;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=6.365;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.71;ReadPosRankSum=0.174;SOR=0.136;set=HC	GT:AD:AF:DP	0/1:16,12:0.43:28
chr3	10186514	rs779811	T	A	110.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:6,5:0.45:11
chr3	10188428	rs1678607	T	G	842.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:35,34:0.49:69
chr3	10189787	.	G	GA	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.893;ClippingRankSum=0.000;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.53;ReadPosRankSum=-0.450;SOR=0.774;set=HC	GT:AD:AF:DP	0/1:65,12:0.16:77
chr3	10189929	rs1681660	T	C	577.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.233;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.837;MLEAC=1;MLEAF=0.500;MQ=59.81;MQRankSum=0.000;QD=6.88;ReadPosRankSum=-0.104;SOR=0.570;set=HC	GT:AD:AF:DP	0/1:51,33:0.39:84
chr3	10219508	rs2306696	T	C	4620.77	.	AC=1;AF=0.500;AN=2;DB;DP=453;set=Intersection	GT:AD:AF:DP	0/1:231,219:0.49:450
chr3	10219729	rs1681663	A	G	1600.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr3	10241987	rs263410	A	C	1015.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr3	10242243	rs263411	G	A	1502.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr3	10251196	rs459864	A	G	4028.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr3	10255002	rs35060588	C	G	1277.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:160,75:0.32:235
chr3	10258493	rs2302862	T	C	2535.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr3	10258514	rs2302861	T	C	3111.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr3	10258762	rs2302860	G	C	5156.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr3	10261237	rs3895949	A	C	1330.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr3	10261248	rs3895948	T	C	1770.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr3	10261294	rs3895947	A	G	2863.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr3	10261329	rs144185216	G	A	1929.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:88,93:0.51:181
chr3	10261594	rs11465911	C	T	1840.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.30;SOR=2.049;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr3	10264480	rs3844283	C	G	8237.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr3	10276163	rs708035	T	A	14076.77	.	AC=2;AF=1.00;AN=2;DB;DP=536;MQ=59.99;set=Intersection	GT:AD:AF:DP	1/1:2,526:1.00:528
chr3	10280753	rs11465932	G	A	2593.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr3	10283716	rs796552	A	G	2637.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr3	10290839	rs2072577	G	A	8929.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr3	10302172	rs394558	G	A	13484.77	.	AC=2;AF=1.00;AN=2;DB;DP=487;set=Intersection	GT:AD:AF:DP	1/1:0,480:1.00:480
chr3	10302369	rs451952	T	C	8095.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:1,291:1.00:292
chr3	10302395	rs439483	G	C	5896.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr3	10302479	rs402330	G	A	1419.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr3	10318230	rs3217211	A	AT	8782.73	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr3	10318275	.	CT	C	162.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.431;ClippingRankSum=0.000;DP=136;ExcessHet=3.0103;FS=5.665;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=-0.520;QD=1.79;ReadPosRankSum=-1.309;SOR=1.506;set=HC	GT:AD:AF:DP	0/1:63,28:0.31:91
chr3	10328250	rs35683	A	C	3456.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr3	10342876	rs696221	C	T	3716.77	.	AC=1;AF=0.500;AN=2;DB;DP=426;MQ=59.99;set=Intersection	GT:AD:AF:DP	0/1:230,189:0.45:419
chr3	10346996	rs200033116	T	TA	518.73	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:38,33:0.46:71
chr3	10353550	rs35670	T	C	1690.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:110,86:0.44:196
chr3	10353626	rs35671	C	T	1939.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:138,101:0.42:239
chr3	10354974	rs141317747	C	T	1064.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:38,46:0.55:84
chr3	10379923	rs35678	C	T	4021.77	.	AC=1;AF=0.500;AN=2;DB;DP=470;set=Intersection	GT:AD:AF:DP	0/1:268,198:0.42:466
chr3	10382111	rs171337	T	C	3713.77	.	AC=1;AF=0.500;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	0/1:177,161:0.48:338
chr3	10382148	rs154242	G	A	4340.77	.	AC=1;AF=0.500;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	0/1:231,204:0.47:435
chr3	10387059	rs241509	C	A	4204.77	.	AC=1;AF=0.500;AN=2;DB;DP=444;set=Intersection	GT:AD:AF:DP	0/1:242,200:0.45:442
chr3	10400643	rs28113	G	A	1042.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:76,50:0.40:126
chr3	10413526	rs2289272	G	A	2391.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:146,115:0.44:261
chr3	10419856	rs56113011	C	G	485.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:20,19:0.49:39
chr3	10420087	rs751122	T	C	2677.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:111,123:0.53:234
chr3	10420875	rs4684686	G	A	1889.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:89,87:0.49:176
chr3	10421107	rs7616000	A	G	3726.77	.	AC=1;AF=0.500;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	0/1:192,167:0.47:359
chr3	10427190	rs725027	C	T	319.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:23,16:0.41:39
chr3	10442779	rs26797	C	T	3695.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:124,166:0.57:290
chr3	10452231	rs34907	G	A	313.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:37,17:0.31:54
chr3	10967739	rs2272395	T	C	10335.77	.	AC=2;AF=1.00;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	1/1:0,381:1.00:381
chr3	10976876	rs2245532	A	G	5703.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr3	11075503	rs2246543	T	C	622.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:21,26:0.55:47
chr3	11076400	rs35957531	C	G	4374.77	.	AC=1;AF=0.500;AN=2;DB;DP=489;set=Intersection	GT:AD:AF:DP	0/1:266,216:0.45:482
chr3	11078373	rs2697134	G	A	799.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:77,38:0.33:115
chr3	11300707	rs901865	T	C	5218.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:2,183:0.99:185
chr3	11518755	rs4684782	T	C	4309.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr3	11596302	rs8154	T	C	7052.77	.	AC=1;AF=0.500;AN=2;DB;DP=886;set=Intersection	GT:AD:AF:DP	0/1:503,377:0.43:880
chr3	11606165	.	T	TCCCTCCCTCACCACCG	515.73	.	AC=1;AF=0.500;AN=2;DP=31;set=Intersection	GT:AD:AF:DP	0/1:11,12:0.52:23
chr3	11643465	rs2276749	T	C	2445.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr3	11667714	rs3856802	C	T	1378.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:75,63:0.46:138
chr3	11684957	rs1803489	C	T	3301.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:135,157:0.54:292
chr3	11685143	rs34152653	T	TA	863.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.661;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.00;ReadPosRankSum=-0.644;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:21,51:0.71:72
chr3	11734748	rs73813008	T	A	404.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.656;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.90;ReadPosRankSum=0.306;SOR=0.490;set=HC	GT:AD:AF:DP	0/1:14,20:0.59:34
chr3	11744544	rs11411195	G	GA	1877.73	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:69,92:0.57:161
chr3	11831953	rs9267	C	T	1830.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:34,82:0.71:116
chr3	11848874	rs3796330	G	C	1366.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:54,61:0.53:115
chr3	11874762	rs12494203	G	A	2707.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:90,121:0.57:211
chr3	11886365	rs392621	T	C	3743.77	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:161,174:0.52:335
chr3	11886451	rs380999	G	A	4436.77	.	AC=1;AF=0.500;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	0/1:176,209:0.54:385
chr3	11887991	rs408600	C	G	4897.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.861;ClippingRankSum=0.000;DB;DP=399;ExcessHet=3.0103;FS=0.370;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.31;ReadPosRankSum=1.724;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:187,211:0.53:398
chr3	11887991	.	CGG	GGA	2944	.	AC=1;AF=0.500;AN=2;BRF=0.41;FR=0.5000;HP=2;HapScore=1;MGOF=1;MMLQ=28;MQ=60.0;NF=97;NR=62;PP=2944;QD=20;SC=GGTCTGAACTCGGCCCTGCCT;SbPval=0.41;Source=Platypus;TC=290;TCF=183;TCR=107;TR=159;WE=11888001;WS=11887981;set=Platypus	GT:AD:AF:DP	0/1:131,159:0.55:290
chr3	11887993	rs144232229	G	A	8440.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.837;ClippingRankSum=0.000;DB;DP=407;ExcessHet=3.0103;FS=0.528;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.79;ReadPosRankSum=1.836;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:189,217:0.53:406
chr3	11912726	rs199860211	T	C	1450.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:45,66:0.59:111
chr3	11912797	rs62246062	C	T	773.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:129,47:0.27:176
chr3	11924613	rs369394286	AG	A	2685.73	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.53;QD=30.52;SOR=2.356;set=HC	GT:AD:AF:DP	1/1:0,88:1.00:88
chr3	11924678	rs11919713	C	G	1703.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:73,79:0.52:152
chr3	12045891	rs79624759	T	C	2266.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=48.23;SOR=3.306;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr3	12045899	rs77368781	C	T	2941.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.57;SOR=3.126;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr3	12045923	rs73135622	A	C	3675.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr3	12045986	rs67270413	G	A	7068.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr3	12046013	rs72624441	A	C	9648.77	.	AC=2;AF=1.00;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	1/1:0,371:1.00:371
chr3	12046076	rs2618395	T	C	9961.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	1/1:0,383:1.00:383
chr3	12046124	rs76272937	AG	GC	7037.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.99;SOR=1.700;set=HC	GT:AD:AF:DP	1/1:0,160:1.00:160
chr3	12046131	rs74213196	A	C	5956.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=50.06;SOR=1.629;set=HC	GT:AD:AF:DP	1/1:0,119:1.00:119
chr3	12046148	rs2623874	C	T	3661.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.21;SOR=1.952;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr3	12046168	rs2623875	A	C	1771.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=49.22;SOR=3.026;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr3	12046196	rs2600233	A	C	201.84	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.37;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr3	12046207	rs2600234	C	G	286.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.97;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr3	12046215	rs2623876	G	C	286.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.97;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr3	12046222	rs71624921	A	C	286.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.97;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr3	12046235	.	GTAAGACGCGCCGAAGACCGCGCCCCC	GCGCGCCGAAGACCGCGCCCCC,G	412.74	.	AC=2,0;AF=1.00,0.00;ALERT;AN=2;DP=10;set=Intersection	GT:AF:DP	1/1:1.00:10
chr3	12046241	.	CGCGCCGA	C	412.74	.	AC=2;AF=1.00;ALERT;AN=2;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.27;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr3	12046251	.	A	C	421.77	.	AC=2;AF=1.00;AN=2;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.18;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr3	12046256	.	GCCCCCCCCC	G	412.74	.	AC=2;AF=1.00;AN=2;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.27;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr3	12046268	.	GCGCGA	G	457.73	.	AC=2;AF=1.00;AN=2;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.61;SOR=3.442;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr3	12046276	rs71624922	A	G	871.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=67.06;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr3	12046297	rs71624923	A	C	1906.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.67;SOR=1.151;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr3	12046318	rs2923854	G	C	2291.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.94;SOR=1.201;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr3	12046321	rs2923855	A	G	2366.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.03;SOR=1.159;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr3	12046362	rs2923856	G	C	2671.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.28;SOR=0.871;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr3	12046364	rs2923857	G	C	2696.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.95;SOR=0.831;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr3	12046372	rs2623877	G	C	2638.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.98;SOR=0.831;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr3	12046445	rs2600235	TT	GC	1220.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr3	12195660	rs140022692	G	A	741.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:44,31:0.41:75
chr3	12202866	rs308950	C	G	1308.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr3	12208652	rs795008	A	G	2608.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr3	12208671	rs795009	G	T	3313.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr3	12229015	rs794999	A	G	21748.77	.	AC=2;AF=1.00;AN=2;DB;DP=828;set=Intersection	GT:AD:AF:DP	1/1:2,818:1.00:820
chr3	12232074	rs310764	A	G	7093.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr3	12232208	rs310765	T	G	1877.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr3	12317739	rs151229409	GAAGGGAGGAAGGA	G	3900.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.827;ClippingRankSum=0.000;DB;DP=258;ExcessHet=3.0103;FS=0.506;MLEAC=1;MLEAF=0.500;MQ=60.79;MQRankSum=5.346;QD=15.36;ReadPosRankSum=2.374;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:148,106:0.42:254
chr3	12531421	rs12495784	G	A	1748.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.429;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.17;ReadPosRankSum=0.472;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:123,91:0.43:214
chr3	12531461	rs78685815	G	A	1652.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:121,86:0.42:207
chr3	12533505	rs74685105	C	A	489.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:25,23:0.48:48
chr3	12533753	rs144898008	TA	T	665.73	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:14,22:0.61:36
chr3	12537924	rs17036841	T	C	680.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:35,34:0.49:69
chr3	12538111	rs41293387	A	G	1255.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:51,60:0.54:111
chr3	12544779	rs77899976	G	A	1898.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:62,88:0.59:150
chr3	12545091	rs3796329	T	C	7329.77	.	AC=1;AF=0.500;AN=2;DB;DP=701;set=Intersection	GT:AD:AF:DP	0/1:336,359:0.52:695
chr3	12557945	.	ATGTGTGTGTGTGTGTG	A	838.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.189;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=7.256;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.21;ReadPosRankSum=-0.142;SOR=1.930;set=HC	GT:AD:AF:DP	0/1:7,25:0.78:32
chr3	12557963	.	G	A	532.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.072;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=6.129;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.37;ReadPosRankSum=1.654;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:10,19:0.66:29
chr3	12558068	rs12491241	A	G	1863.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:32,86:0.73:118
chr3	12560560	rs17036879	G	A	2476.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:86,110:0.56:196
chr3	12571420	.	G	GT	359.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.214;ClippingRankSum=0.000;DP=159;ExcessHet=3.0103;FS=0.819;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.671;QD=2.73;ReadPosRankSum=-1.231;SOR=0.572;set=HC	GT:AD:AF:DP	0/1:89,43:0.33:132
chr3	12574137	rs79692336	G	T	2678.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:140,128:0.48:268
chr3	12584635	rs12493091	T	C	1175.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:39,53:0.58:92
chr3	12584699	rs12496109	A	G	1327.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:45,62:0.58:107
chr3	12598839	rs2255655	C	G	1270.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:39,48:0.55:87
chr3	12610552	rs114800154	A	G	4231.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:127,184:0.59:311
chr3	12613866	rs2648307	T	C	3773.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:129,179:0.58:308
chr3	12626516	rs3729931	G	A	3485.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:119,145:0.55:264
chr3	12633168	rs2290161	A	G	1664.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:77,81:0.51:158
chr3	12633424	rs34541887	A	AT	46.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.672;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=1.595;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.97;ReadPosRankSum=0.751;SOR=0.385;set=HC	GT:AD:AF:DP	0/1:37,11:0.23:48
chr3	12644881	rs5746212	A	T	3572.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:93,152:0.62:245
chr3	12647547	rs3214791	T	TG	846.73	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:46,27:0.37:73
chr3	12650482	rs2454440	T	A	6290.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr3	12660291	rs3729926	C	T	4851.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr3	12776428	rs3732687	A	C	6800.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:1,244:1.00:245
chr3	12779409	rs2271209	A	G	3459.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr3	12791172	rs937915	T	C	2186.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr3	12810629	rs112818257	CCGGGACTGG	C	1267.73	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:30,34:0.53:64
chr3	12810755	rs7641959	G	C	887.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:19,42:0.69:61
chr3	12810783	rs61606491	C	T	670.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:13,30:0.70:43
chr3	12838293	rs12631514	G	C	5342.77	.	AC=1;AF=0.500;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	0/1:186,250:0.57:436
chr3	12845158	rs9835677	G	A	1429.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:37,59:0.61:96
chr3	12848822	rs11718898	T	C	3262.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:159,154:0.49:313
chr3	12849011	rs34529773	TA	T	1110.73	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:53,63:0.54:116
chr3	12849031	rs59302336	C	CA	600.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.108;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=1.193;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.12;ReadPosRankSum=0.151;SOR=1.008;set=HC	GT:AD:AF:DP	0/1:35,39:0.53:74
chr3	12856856	rs2305398	A	G	3631.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:135,170:0.56:305
chr3	12857493	rs2305397	C	T	4400.77	.	AC=1;AF=0.500;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	0/1:170,212:0.55:382
chr3	12857823	rs731646	C	T	2703.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:59,112:0.65:171
chr3	12858028	rs3732675	T	C	3386.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:115,148:0.56:263
chr3	12858462	rs377443431	C	T	4529.77	.	AC=1;AF=0.500;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	0/1:139,200:0.59:339
chr3	12859004	rs3732678	A	C	3370.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:140,155:0.53:295
chr3	12872877	rs9814191	T	G	2345.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:172,120:0.41:292
chr3	12872901	rs58996323	G	A	3009.77	.	AC=1;AF=0.500;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	0/1:224,157:0.41:381
chr3	12873121	rs145605538	CCTCGGCCAGTCGTT	C	1416.73	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:48,38:0.44:86
chr3	12875443	rs12629133	G	A	6189.77	.	AC=1;AF=0.500;AN=2;DB;DP=597;set=Intersection	GT:AD:AF:DP	0/1:296,300:0.50:596
chr3	12877830	rs56204642	G	GT	1055.73	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:60,38:0.39:98
chr3	12880818	rs2290312	A	C	2482.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:200,126:0.39:326
chr3	12881233	rs3901334	A	G	716.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:41,32:0.44:73
chr3	12881757	rs7627602	C	T	2908.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:137,141:0.51:278
chr3	12892035	rs143622059	GGGGAGA	G	2069.73	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:33,54:0.62:87
chr3	12942328	rs3773309	T	C	627.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:54,30:0.36:84
chr3	12942408	rs9818523	G	A	3024.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:100,139:0.58:239
chr3	12942761	.	G	A	2670.77	.	AC=1;AF=0.500;AN=2;DP=280;set=Intersection	GT:AD:AF:DP	0/1:149,121:0.45:270
chr3	12942850	rs56387830	GC	G	4981.73	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr3	12943083	.	ATTTT	A	2658.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.605;ClippingRankSum=0.000;DP=140;ExcessHet=3.0103;FS=0.834;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.16;ReadPosRankSum=-1.308;SOR=0.587;set=HC	GT:AD:AF:DP	0/1:50,70:0.58:120
chr3	12943094	rs3773310	T	C	2668.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.074;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=0.792;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.43;ReadPosRankSum=0.224;SOR=0.583;set=HC	GT:AD:AF:DP	0/1:49,70:0.59:119
chr3	12944158	rs63063761	CA	C	199.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.131;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.89;MQRankSum=0.000;QD=15.36;ReadPosRankSum=-1.204;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:1,12:0.92:13
chr3	12954868	rs2600322	A	G	6292.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr3	12956531	rs2255964	G	A	1896.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:53,80:0.60:133
chr3	12956817	rs55881454	C	G	1954.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:98,87:0.47:185
chr3	12962074	rs35319679	G	A	3243.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:143,152:0.52:295
chr3	12976863	rs2600206	T	C	1499.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:23,60:0.72:83
chr3	13114691	rs74753289	G	A	1591.18	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:8,61:0.88:69
chr3	13359433	rs354477	G	A	1003.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr3	13361238	rs2276748	C	T	4969.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr3	13361287	rs354478	C	T	6567.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr3	13361391	rs354479	A	G	8407.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr3	13364876	rs514084	G	T	9962.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	1/1:0,378:1.00:378
chr3	13367406	rs665064	C	T	5974.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr3	13393166	.	C	CT	53.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.460;ClippingRankSum=0.000;DP=62;ExcessHet=3.0103;FS=5.604;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.88;ReadPosRankSum=-0.140;SOR=0.165;set=HC	GT:AD:AF:DP	0/1:48,13:0.21:61
chr3	13413371	rs41293405	G	A	6614.77	.	AC=1;AF=0.500;AN=2;DB;DP=570;set=Intersection	GT:AD:AF:DP	0/1:254,313:0.55:567
chr3	13539850	rs75944917	C	G	1002.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:70,47:0.40:117
chr3	13574068	rs35913726	AC	A	2793.73	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr3	13669537	rs1966825	T	G	1679.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:67,74:0.52:141
chr3	13670481	rs2242023	A	G	4274.77	.	AC=1;AF=0.500;AN=2;DB;DP=439;set=Intersection	GT:AD:AF:DP	0/1:224,208:0.48:432
chr3	13670536	rs9843344	A	G	4565.77	.	AC=1;AF=0.500;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	0/1:196,202:0.51:398
chr3	13670776	rs4684968	T	C	2141.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:55,98:0.64:153
chr3	13670837	rs4684969	T	G	769.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:26,31:0.54:57
chr3	13678173	rs2290188	G	T	4942.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:3,185:0.98:188
chr3	13679044	rs4684148	G	A	8358.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:2,303:0.99:305
chr3	13679203	rs1061375	G	A	16258.77	.	AC=2;AF=1.00;AN=2;DB;DP=600;set=Intersection	GT:AD:AF:DP	1/1:0,595:1.00:595
chr3	13679335	rs1061376	C	T	7201.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr3	13679829	rs7820	C	T	3098.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr3	13679855	rs7596	T	A	1680.73	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr3	13679906	rs77628528	G	A	184.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:17,9:0.35:26
chr3	13860957	rs79020924	A	G	2369.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:73,95:0.57:168
chr3	13916407	rs3749319	G	T	2581.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:60,103:0.63:163
chr3	14197987	rs2958057	A	T	9017.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:0,332:1.00:332
chr3	14485484	rs36107877	C	A	7085.77	.	AC=1;AF=0.500;AN=2;DB;DP=603;set=Intersection	GT:AD:AF:DP	0/1:262,333:0.56:595
chr3	14486392	rs3773189	A	G	446.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:23,22:0.49:45
chr3	14489370	rs2304511	G	T	3123.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:154,147:0.49:301
chr3	14513695	rs2289128	G	A	3358.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:127,166:0.57:293
chr3	14513925	rs2289127	C	T	642.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:11,26:0.70:37
chr3	14526538	rs1062540	G	A	3717.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr3	14526612	rs35363110	AT	A	1152.73	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:16,81:0.84:97
chr3	14526656	rs1126666	A	G	1901.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr3	14537867	rs11918344	A	G	2193.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr3	14538072	rs11333211	CA	C	16371.73	.	AC=2;AF=1.00;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	1/1:0,440:1.00:440
chr3	14548494	rs2276755	A	G	9786.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:0,346:1.00:346
chr3	14551444	rs9845816	A	G	10006.77	.	AC=2;AF=1.00;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	1/1:0,371:1.00:371
chr3	14552994	rs4685168	A	G	3149.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr3	14554476	rs4516597	T	C	5607.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr3	14555009	rs4685170	C	T	1934.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr3	14555216	rs4685171	T	C	13579.77	.	AC=2;AF=1.00;AN=2;DB;DP=523;set=Intersection	GT:AD:AF:DP	1/1:0,520:1.00:520
chr3	14555367	rs4685172	T	C	2230.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr3	14555739	rs4361268	G	A	4178.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr3	14555758	rs138623401	C	CAGTT	7864.73	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr3	14555811	rs4613440	A	G	6037.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr3	14558455	rs150652797	G	A	1759.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:76,81:0.52:157
chr3	14561627	rs5846840	A	AG	3418.73	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr3	14563258	rs4234526	A	G	3814.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr3	14565017	rs4685173	G	A	8575.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr3	14696955	rs199807537	G	GT	320.73	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:17,23:0.57:40
chr3	14702982	rs2276754	C	A	7580.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr3	14703297	rs9840626	C	T	3445.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:189,168:0.47:357
chr3	14706745	rs142447115	T	TATTG	584.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr3	14708918	rs2280383	A	G	7311.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr3	14712473	rs1901	G	A	10016.77	.	AC=2;AF=1.00;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	1/1:2,352:0.99:354
chr3	14712732	rs61316466	C	G	5825.77	.	AC=1;AF=0.500;AN=2;DB;DP=507;set=Intersection	GT:AD:AF:DP	0/1:230,265:0.54:495
chr3	14724413	rs9821143	G	A	8213.77	.	AC=1;AF=0.500;AN=2;DB;DP=1014;set=Intersection	GT:AD:AF:DP	0/1:584,412:0.41:996
chr3	14725668	rs12488352	G	A	2199.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr3	14756730	rs9869372	A	G	2523.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr3	14763954	rs12486391	G	A	2679.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:115,128:0.53:243
chr3	14768534	rs7636830	A	G	4230.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr3	14801550	rs2729697	G	A	1208.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:44,53:0.55:97
chr3	14813825	rs294624	G	C	1436.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr3	14905513	rs172429	T	G	1450.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:70,59:0.46:129
chr3	14939198	rs2117775	G	A	1233.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:71,60:0.46:131
chr3	14939364	rs2117774	G	A	800.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:53,35:0.40:88
chr3	14939479	rs2164356	G	T	3952.77	.	AC=1;AF=0.500;AN=2;DB;DP=482;set=Intersection	GT:AD:AF:DP	0/1:274,198:0.42:472
chr3	14939679	rs2307090	G	A	941.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:98,48:0.33:146
chr3	14942024	rs2307088	T	C	1102.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:54,54:0.50:108
chr3	14942675	rs293906	G	A	1739.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:68,73:0.52:141
chr3	14949268	rs9818644	C	T	872.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:66,42:0.39:108
chr3	14960170	rs293916	T	C	1653.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:1,61:0.98:62
chr3	14963836	.	G	A	1502.77	.	AC=1;AF=0.500;AN=2;DP=161;set=Intersection	GT:AD:AF:DP	0/1:87,71:0.45:158
chr3	14965466	rs4685234	C	T	5464.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr3	14965507	rs4685235	A	G	9841.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	1/1:0,375:1.00:375
chr3	15100801	rs13068576	G	A	1131.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:32,46:0.59:78
chr3	15115270	rs3831	G	T	639.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:47,37:0.44:84
chr3	15127522	rs72400013	CTAG	C	1815.73	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:50,48:0.49:98
chr3	15127643	rs9867079	G	A	83.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:4,5:0.56:9
chr3	15133088	rs9869512	C	T	2318.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:110,107:0.49:217
chr3	15216429	rs7639618	C	T	5630.77	.	AC=1;AF=0.500;AN=2;DB;DP=537;set=Intersection	GT:AD:AF:DP	0/1:258,273:0.51:531
chr3	15216703	rs11718863	A	T	2922.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:126,131:0.51:257
chr3	15222262	rs2129947	G	A	658.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:21,26:0.55:47
chr3	15259992	rs35247476	G	A	3011.77	.	AC=1;AF=0.500;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	0/1:221,158:0.42:379
chr3	15274213	.	A	G	322.77	.	AC=1;AF=0.500;AN=2;DP=45;set=Intersection	GT:AD:AF:DP	0/1:26,16:0.38:42
chr3	15297787	rs116459865	T	C	1793.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:59,75:0.56:134
chr3	15301363	rs2291853	G	A	12299.77	.	AC=2;AF=1.00;AN=2;DB;DP=466;set=Intersection	GT:AD:AF:DP	1/1:0,465:1.00:465
chr3	15311325	rs1287467	A	G	4938.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr3	15311464	rs1287468	G	T	504.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:11,22:0.67:33
chr3	15345924	rs9828229	G	A	3088.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr3	15371819	rs3773464	C	A	934.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr3	15455717	rs2290537	A	G	2682.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:81,117:0.59:198
chr3	15456550	rs148072600	A	AAAAC	1267.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.195;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=1.526;QD=17.61;ReadPosRankSum=1.897;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:38,34:0.47:72
chr3	15495386	rs55866379	G	A	2913.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:90,141:0.61:231
chr3	15497608	rs28538922	A	G	2915.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:117,133:0.53:250
chr3	15512276	rs2305618	G	T	904.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:39,45:0.54:84
chr3	15515695	rs2305616	C	T	2091.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:63,91:0.59:154
chr3	15515918	rs28632773	C	G	222.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:10,10:0.50:20
chr3	15517025	rs2305615	G	A	1658.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:57,78:0.58:135
chr3	15517208	rs75395973	C	T	188.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr3	15518841	rs13095087	G	A	1664.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:46,71:0.61:117
chr3	15520838	rs750387	T	C	2079.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:88,98:0.53:186
chr3	15529543	rs1983085	T	C	292.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:14,14:0.50:28
chr3	15537992	rs9847828	A	G	371.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:21,16:0.43:37
chr3	15539976	rs141810796	C	CCACACA	8466.73	.	AC=1;AF=0.500;AN=2;DB;DP=608;set=Intersection	GT:AD:AF:DP	0/1:273,264:0.49:537
chr3	15613279	rs200924343	T	TA	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.471;ClippingRankSum=0.000;DB;DP=278;ExcessHet=3.0103;FS=0.690;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=3.866;QD=0.13;ReadPosRankSum=0.313;SOR=0.816;set=HC	GT:AD:AF:DP	0/1:198,38:0.16:236
chr3	15642844	rs41284037	C	T	7195.77	.	AC=1;AF=0.500;AN=2;DB;DP=641;set=Intersection	GT:AD:AF:DP	0/1:300,333:0.53:633
chr3	15643043	rs2019160	A	G	29842.77	.	AC=2;AF=1.00;AN=2;DB;DP=1095;set=Intersection	GT:AD:AF:DP	1/1:0,1083:1.00:1083
chr3	15717614	rs17041435	G	A	1826.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:119,88:0.43:207
chr3	15717641	rs78957730	G	A	1698.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:57,77:0.57:134
chr3	15717693	rs2246960	G	A	609.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:26,25:0.49:51
chr3	15718652	rs2470540	T	A	183.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.658;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.25;ReadPosRankSum=0.363;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:22,13:0.37:35
chr3	15736385	rs2455814	A	T	16386.77	.	AC=2;AF=1.00;AN=2;DB;DP=608;set=Intersection	GT:AD:AF:DP	1/1:0,600:1.00:600
chr3	15737610	rs2470547	T	C	2708.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:149,126:0.46:275
chr3	15737689	rs2470548	G	A	6793.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.760;ClippingRankSum=0.000;DB;DP=454;ExcessHet=3.0103;FS=0.525;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.23;ReadPosRankSum=-1.413;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:259,187:0.42:446
chr3	15737698	rs2470549	T	C	6808.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.237;ClippingRankSum=0.000;DB;DP=455;ExcessHet=3.0103;FS=0.525;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.23;ReadPosRankSum=-0.077;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:260,187:0.42:447
chr3	15752830	rs2455833	T	C	951.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:24,42:0.64:66
chr3	15753641	rs2455834	A	G	2641.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:159,139:0.47:298
chr3	15756215	rs924754	A	T	972.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.708;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=4.449;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.16;ReadPosRankSum=-0.411;SOR=0.344;set=HC	GT:AD:AF:DP	0/1:32,48:0.60:80
chr3	15807725	rs6789076	T	A	1699.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:107,86:0.45:193
chr3	15836723	rs149384714	G	GT	530.73	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:36,27:0.43:63
chr3	15838150	.	G	GT	331.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.559;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=0.603;QD=18.43;ReadPosRankSum=1.161;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:1,17:0.94:18
chr3	15900950	.	C	CGCCGCT	2899.73	.	AC=1;AF=0.500;AN=2;DP=614;MQ=60.15;set=Intersection	GT:AD:AF:DP	0/1:301,158:0.34:459
chr3	15900966	.	G	GCTGCCA	2978	.	AC=1;AF=0.500;AN=2;BRF=0.56;FR=0.5000;HP=4;HapScore=1;MGOF=18;MMLQ=24;MQ=59.97;NF=7;NR=101;PP=2978;QD=20;SC=TGCCGCTGCCGCCGCCGACCG;SbPval=0.3;Source=Platypus;TC=201;TCF=10;TCR=191;TR=108;WE=15900981;WS=15900956;set=Platypus	GT:AD:AF:DP	0/1:93,108:0.54:201
chr3	15900973	rs62243667	A	C	5843.77	.	AC=1;AF=0.500;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	0/1:270,153:0.36:423
chr3	15901053	rs71064238	CT	C	4120.73	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr3	15901087	.	C	CCCG	633.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.391;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=1.184;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.40;ReadPosRankSum=2.170;SOR=0.615;set=HC	GT:AD:AF:DP	0/1:25,19:0.43:44
chr3	16310857	rs842258	G	A	1859.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr3	16312716	rs11284055	GT	G	118.73	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:14,10:0.42:24
chr3	16313320	rs6796483	G	A	2446.77	.	AC=1;AF=0.500;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	0/1:239,128:0.35:367
chr3	16313597	.	CT	C	216.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.932;ClippingRankSum=0.000;DP=101;ExcessHet=3.0103;FS=10.385;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.615;QD=2.21;ReadPosRankSum=-1.331;SOR=1.685;set=HC	GT:AD:AF:DP	0/1:66,32:0.33:98
chr3	16313872	rs6797005	G	C	558.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:33,24:0.42:57
chr3	16327909	rs6777976	C	T	1971.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:130,97:0.43:227
chr3	16343092	rs842283	T	G	938.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:40,40:0.50:80
chr3	16358584	rs690241	T	C	13207.77	.	AC=2;AF=1.00;AN=2;DB;DP=508;set=Intersection	GT:AD:AF:DP	1/1:0,499:1.00:499
chr3	16364846	rs59223456	C	T	1240.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:134,71:0.35:205
chr3	16364919	rs690216	A	C	5421.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr3	16364954	rs11554130	C	T	1282.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:104,66:0.39:170
chr3	16368121	rs690145	T	C	718.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr3	16368436	rs62233922	G	A	581.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:24,24:0.50:48
chr3	16399580	rs113108751	TG	T	1059.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.592;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=2.544;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=0.000;QD=13.76;ReadPosRankSum=0.998;SOR=0.156;set=HC	GT:AD:AF:DP	0/1:47,30:0.39:77
chr3	16399590	rs35271329	C	T	1105.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.799;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=3.642;MLEAC=1;MLEAF=0.500;MQ=59.78;MQRankSum=0.000;QD=14.00;ReadPosRankSum=0.380;SOR=0.236;set=HC	GT:AD:AF:DP	0/1:47,32:0.41:79
chr3	16411531	rs17042188	T	C	1387.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:41,61:0.60:102
chr3	16450872	rs1546650	T	C	6992.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr3	16535229	rs3815962	C	T	1656.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:58,77:0.57:135
chr3	16635866	rs13067997	C	G	345.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:15,17:0.53:32
chr3	16639754	rs3773827	G	T	2616.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:89,123:0.58:212
chr3	16646745	rs9847342	C	G	4258.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:136,199:0.59:335
chr3	16926445	rs138820460	A	AG	579.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr3	16926491	rs6442654	G	A	338.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr3	16926521	rs200478663	CT	C	592.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr3	16926524	.	CT	C	592.73	.	AC=2;AF=1.00;AN=2;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr3	16926539	.	CT	C	817.73	.	AC=2;AF=1.00;AN=2;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.04;SOR=2.948;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr3	16926544	rs368284573	T	G	826.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.51;SOR=2.948;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr3	16926548	.	GT	G	952.73	.	AC=2;AF=1.00;AN=2;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.37;SOR=3.160;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr3	16926551	.	CG	C	997.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.35;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr3	16926553	.	T	C	1006.77	.	AC=2;AF=1.00;ALERT;AN=2;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.76;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr3	16926557	rs372006934	T	G	1051.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.82;SOR=3.442;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr3	16926561	.	CT	C	1076.73	.	AC=2;AF=1.00;AN=2;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.86;SOR=3.442;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr3	16926567	rs373958057	T	C	1090.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.95;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr3	16926599	rs7626446	T	G	2044.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.44;SOR=2.059;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr3	16926607	rs7626448	T	C	2227.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.25;SOR=1.835;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr3	16926642	rs6442655	A	G	4205.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.74;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr3	16926648	rs6442656	T	G	4201.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.70;SOR=1.265;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr3	16926666	rs7626542	T	G	5023.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr3	17053613	rs61751588	C	T	1046.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:97,52:0.35:149
chr3	17208267	rs1138454	T	C	9831.77	.	AC=2;AF=1.00;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	1/1:0,378:1.00:378
chr3	17275173	rs2060628	G	C	4265.77	.	AC=1;AF=0.500;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	0/1:241,208:0.46:449
chr3	17279526	rs2060629	T	C	229.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:13,10:0.43:23
chr3	17300133	rs2596647	A	C	613.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:17,24:0.59:41
chr3	17413531	rs11272495	A	AAAACAAACAAACAAAC	1884.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.537;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=4.245;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.000;QD=15.84;ReadPosRankSum=-0.401;SOR=1.181;set=HC	GT:AD:AF:DP	0/1:77,42:0.35:119
chr3	17469901	.	G	GTA	50.73	.	AC=1;AF=0.500;AN=2;DP=9;set=Intersection	GT:AD:AF:DP	0/1:1,3:0.75:4
chr3	17469903	rs4034995	G	A	138.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.36;MQRankSum=-0.000;QD=23.12;ReadPosRankSum=-1.150;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:1,5:0.83:6
chr3	17470114	rs2121262	C	T	294.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:19,16:0.46:35
chr3	18055231	rs61978649	A	C	5738.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:1,223:1.00:224
chr3	18057982	rs9310538	A	G	474.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr3	18058059	rs9310539	A	G	963.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr3	18058093	rs62240226	C	G	1616.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.40;SOR=0.796;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr3	18082839	.	C	CT	84.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.872;ClippingRankSum=0.000;DP=77;ExcessHet=3.0103;FS=4.360;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.11;ReadPosRankSum=0.793;SOR=0.275;set=HC	GT:AD:AF:DP	0/1:61,15:0.20:76
chr3	18308436	rs7432753	A	G	6977.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:1,251:1.00:252
chr3	19388305	rs6768477	A	G	991.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:52,44:0.46:96
chr3	19436587	rs10470642	T	C	645.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:24,27:0.53:51
chr3	19498221	.	C	CT	60.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.497;ClippingRankSum=0.000;DP=67;ExcessHet=3.0103;FS=1.917;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=1.922;QD=0.96;ReadPosRankSum=-0.019;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:50,13:0.21:63
chr3	19556990	rs56353870	AT	A	504.70	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.170;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.22;ReadPosRankSum=0.757;SOR=0.929;set=HC	GT:AD:AF:DP	0/1:7,38:0.84:45
chr3	19575381	rs142631555	G	A	5305.77	.	AC=1;AF=0.500;AN=2;DB;DP=663;set=Intersection	GT:AD:AF:DP	0/1:394,260:0.40:654
chr3	19946992	rs2931394	G	A	755.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr3	19959756	rs2929366	G	A	4662.77	.	AC=1;AF=0.500;AN=2;DB;DP=534;set=Intersection	GT:AD:AF:DP	0/1:294,236:0.45:530
chr3	19961330	rs2931403	C	T	3328.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr3	19962044	rs13078867	G	A	3176.77	.	AC=1;AF=0.500;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	0/1:250,164:0.40:414
chr3	19962223	rs13079262	G	A	622.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:34,26:0.43:60
chr3	19974700	rs2929350	T	C	727.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:42,37:0.47:79
chr3	19975215	rs17795400	C	A	7495.77	.	AC=1;AF=0.500;AN=2;DB;DP=779;set=Intersection	GT:AD:AF:DP	0/1:403,360:0.47:763
chr3	19975582	rs2929349	A	G	999.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:51,43:0.46:94
chr3	19992432	rs6773437	G	T	1709.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:56,72:0.56:128
chr3	19992588	rs10510496	G	A	2877.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:111,130:0.54:241
chr3	20017388	rs140496148	T	TA	126.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=2.216;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.45;ReadPosRankSum=0.859;SOR=0.273;set=HC	GT:AD:AF:DP	0/1:5,10:0.67:15
chr3	20017489	rs4858122	GG	CC	679.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;JOINED;set=Intersection	GT:AD:AF:DP	0/1:16,18:0.53:34
chr3	20025665	rs34961993	G	GA	353.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr3	20025906	.	G	GT	72.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.964;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.35;ReadPosRankSum=-0.807;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:21,10:0.32:31
chr3	20042834	rs4103004	C	T	5617.77	.	AC=1;AF=0.500;AN=2;DB;DP=453;set=Intersection	GT:AD:AF:DP	0/1:191,250:0.57:441
chr3	20043502	rs9882323	C	T	3564.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:156,167:0.52:323
chr3	20043531	rs9882344	C	T	3101.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:123,138:0.53:261
chr3	20053676	rs6802632	T	C	2375.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:62,114:0.65:176
chr3	20142360	rs4858764	T	C	280.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:14,11:0.44:25
chr3	20142666	rs11714203	T	C	1275.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:90,60:0.40:150
chr3	20143020	rs4858155	G	C	3464.77	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:166,158:0.49:324
chr3	20156302	rs2365794	T	C	373.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:28,16:0.36:44
chr3	20179033	.	CT	C	319.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.266;ClippingRankSum=0.000;DP=358;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=0.000;QD=1.02;ReadPosRankSum=0.237;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:243,71:0.23:314
chr3	20188074	rs2686314	C	T	1727.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr3	21462754	rs451242	A	G	2551.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:84,124:0.60:208
chr3	21462787	rs427233	G	A	3572.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:129,169:0.57:298
chr3	21606027	rs3841545	ATT	A,AT	1284.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=93;set=Intersection	GT:AF:DP	1/2:0.22,0.68:88
chr3	23364883	rs9844558	G	A	2670.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr3	23364918	rs11921580	C	T	1922.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:71,87:0.55:158
chr3	23986983	rs7644275	C	G	396.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:32,21:0.40:53
chr3	23987002	.	A	AGGC	1761.73	.	AC=1;AF=0.500;AN=2;DP=73;set=Intersection	GT:AD:AF:DP	0/1:26,46:0.64:72
chr3	23996371	rs4858095	T	G	1553.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr3	24006477	rs4858097	T	A	3749.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr3	24009279	rs67657770	A	C	807.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:33,35:0.51:68
chr3	24270263	rs7642896	G	C	626.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:20,28:0.58:48
chr3	24270500	rs3836253	G	GA	269.73	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:36,18:0.33:54
chr3	24562877	rs11714172	G	T	5047.77	.	AC=1;AF=0.500;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	0/1:206,242:0.54:448
chr3	25470411	.	G	GA	53.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.188;ClippingRankSum=0.000;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=2.184;QD=0.74;ReadPosRankSum=-0.716;SOR=0.578;set=HC	GT:AD:AF:DP	0/1:60,13:0.18:73
chr3	25611472	rs369808161	GACACACACAC	G	769.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.730;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.05;ReadPosRankSum=0.217;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:12,20:0.62:32
chr3	25639973	rs11372851	A	AT	1046.73	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:50,60:0.55:110
chr3	25775253	rs1488992	T	C	1953.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr3	25775356	rs6550987	A	C	9386.77	.	AC=2;AF=1.00;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	1/1:2,346:0.99:348
chr3	25805879	rs11129208	T	C	2515.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr3	25836023	rs9831075	C	T	1849.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr3	25902401	rs4681082	G	C	53.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.615;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.14;ReadPosRankSum=1.969;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:9,4:0.31:13
chr3	25904394	rs6550999	T	C	784.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:24,37:0.61:61
chr3	27184801	rs10865812	T	A	1168.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:61,54:0.47:115
chr3	27203864	rs62255210	C	T	307.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:11,13:0.54:24
chr3	27204052	rs17854381	G	A	1638.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:84,77:0.48:161
chr3	27213416	rs2017568	TA	AG	1481.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;JOINED;set=Intersection	GT:AD:AF:DP	0/1:42,40:0.49:82
chr3	27233376	rs11926580	G	T	376.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:25,16:0.39:41
chr3	27233498	rs11926556	C	A	2728.77	.	AC=1;AF=0.500;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	0/1:240,141:0.37:381
chr3	27242887	rs66472045	G	A	1638.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:40,65:0.62:105
chr3	27243045	rs17680166	G	C	5057.77	.	AC=1;AF=0.500;AN=2;DB;DP=577;set=Intersection	GT:AD:AF:DP	0/1:326,245:0.43:571
chr3	27243119	rs17680194	G	A	3481.77	.	AC=1;AF=0.500;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	0/1:207,170:0.45:377
chr3	27243871	rs34940413	T	C	1104.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:66,55:0.45:121
chr3	27294507	rs2166214	A	T	313.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.572;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=5.866;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.41;ReadPosRankSum=2.689;SOR=2.093;set=HC	GT:AD:AF:DP	0/1:42,16:0.28:58
chr3	27296796	rs1550769	C	G	2073.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:189,115:0.38:304
chr3	27296822	rs1550768	A	T	1626.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:140,85:0.38:225
chr3	27297684	rs12494667	C	A	448.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:15,19:0.56:34
chr3	27297816	rs3213930	G	C	4605.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr3	27326097	rs11129280	G	T	489.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:23,23:0.50:46
chr3	27326451	rs10510594	A	G	950.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:63,47:0.43:110
chr3	27326553	rs34894168	AC	A	289.73	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:16,10:0.38:26
chr3	27329417	rs10510593	A	C	46.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:6,3:0.33:9
chr3	27332177	rs674303	T	C	1479.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:66,70:0.51:136
chr3	27332282	rs62255594	C	T	334.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:40,20:0.33:60
chr3	27332302	rs674798	G	T	769.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.546;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.90;ReadPosRankSum=1.092;SOR=0.901;set=HC	GT:AD:AF:DP	0/1:10,33:0.77:43
chr3	27332674	rs864241	T	C	2599.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:76,116:0.60:192
chr3	27332820	rs10510592	A	G	2429.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:165,123:0.43:288
chr3	27335350	rs633157	A	T	516.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr3	27343376	rs6551192	G	A	933.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:33,41:0.55:74
chr3	27350384	rs77257134	G	T	1020.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.109;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.17;ReadPosRankSum=0.275;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:69,56:0.45:125
chr3	27353716	rs552647	C	A	5937.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr3	27363637	rs11393122	T	TA	2210.73	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:18,120:0.87:138
chr3	27363937	rs640065	T	A	993.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:46,42:0.48:88
chr3	27385616	rs7635958	A	C	1010.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:24,37:0.61:61
chr3	27387462	rs56104872	G	GGTAA	1575.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:50,38:0.43:88
chr3	27387463	rs2370957	C	A	1584.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:50,42:0.46:92
chr3	27394419	rs12494966	T	G	1225.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:45,57:0.56:102
chr3	27424718	rs1472256	A	G	14186.77	.	AC=2;AF=1.00;AN=2;DB;DP=554;set=Intersection	GT:AD:AF:DP	1/1:0,550:1.00:550
chr3	27424799	rs17019721	A	G	2845.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:139,130:0.48:269
chr3	27427601	rs34916422	TA	T	1421.73	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:32,40:0.56:72
chr3	27427616	rs17630711	A	G	494.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:37,23:0.38:60
chr3	27427618	rs13075550	A	G	1386.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:23,36:0.61:59
chr3	27431898	rs13068734	G	T	435.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:26,20:0.43:46
chr3	27442336	rs3736312	G	A	1540.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:81,79:0.49:160
chr3	27446285	rs13063291	T	A	1335.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:43,55:0.56:98
chr3	27472936	rs3755652	C	T	1958.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.065;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.00;ReadPosRankSum=-1.335;SOR=0.731;set=HC	GT:AD:AF:DP	0/1:84,94:0.53:178
chr3	27473066	rs13077400	A	G	1301.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:57,61:0.52:118
chr3	27490194	rs13096477	T	C	6354.77	.	AC=1;AF=0.500;AN=2;DB;DP=524;set=Intersection	GT:AD:AF:DP	0/1:228,293:0.56:521
chr3	27494589	rs2371065	A	C	377.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.744;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=1.503;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.19;ReadPosRankSum=-1.585;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:14,17:0.55:31
chr3	27525403	rs148062123	GGGGATGGCGA	G	538.73	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:18,15:0.45:33
chr3	27759322	rs34777083	TA	T	515.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.208;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=6.054;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=2.052;QD=4.33;ReadPosRankSum=-0.188;SOR=1.481;set=HC	GT:AD:AF:DP	0/1:62,57:0.48:119
chr3	27759338	rs9866625	C	A	638.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.612;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=1.584;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=-1.460;QD=5.37;ReadPosRankSum=-0.392;SOR=0.494;set=HC	GT:AD:AF:DP	0/1:78,41:0.34:119
chr3	27759404	rs2581183	C	T	473.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:21,21:0.50:42
chr3	27763427	rs368178421	G	GCGGCGC	1182.73	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:58,35:0.38:93
chr3	28520417	rs1563656	T	A	2262.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:54,104:0.66:158
chr3	28520576	rs60690028	T	C	316.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:5,14:0.74:19
chr3	28533458	rs13099814	A	G	179.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:27,11:0.29:38
chr3	28533658	rs13100556	G	A	1228.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:47,59:0.56:106
chr3	28552644	rs4680751	G	T	529.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:34,27:0.44:61
chr3	28557206	rs139024624	CTGTG	C	714.73	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:18,21:0.54:39
chr3	28557236	rs7617655	G	A	760.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:17,22:0.56:39
chr3	28578605	.	A	AT	45.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.616;ClippingRankSum=0.000;DP=26;ExcessHet=3.0103;FS=1.820;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.76;ReadPosRankSum=-1.100;SOR=1.460;set=HC	GT:AD:AF:DP	0/1:19,7:0.27:26
chr3	29529907	rs2371695	G	A	2349.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:46,60:0.57:106
chr3	29529913	rs5847572	TTC	T	2375.73	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:52,62:0.54:114
chr3	29628741	rs7647211	G	T	94.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.792;ClippingRankSum=-0.000;DB;DP=26;ExcessHet=3.0103;FS=5.441;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.54;ReadPosRankSum=1.981;SOR=3.611;set=HC	GT:AD:AF:DP	0/1:2,5:0.71:7
chr3	29628743	rs200372230	G	T	94.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=24;ExcessHet=3.0103;FS=5.441;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.54;ReadPosRankSum=1.981;SOR=3.611;set=HC	GT:AD:AF:DP	0/1:2,5:0.71:7
chr3	29781465	rs71091076	C	CA	529.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.191;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=0.650;QD=9.99;ReadPosRankSum=2.768;SOR=2.093;set=HC	GT:AD:AF:DP	0/1:14,39:0.74:53
chr3	29804300	rs7340719	C	A	619.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr3	29804487	rs1371839	A	T	5574.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr3	29804509	rs1371840	T	C	6150.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr3	29925518	rs2218724	A	G	681.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:47,36:0.43:83
chr3	29977739	rs1449287	T	C	6225.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:1,216:1.00:217
chr3	30029724	rs1868491	C	T	3752.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:102,170:0.62:272
chr3	30032470	rs3773125	T	C	363.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:26,16:0.38:42
chr3	30045552	rs55920068	CAATT	C	329.73	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:9,10:0.53:19
chr3	30686414	rs1155705	A	G	3906.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:132,172:0.57:304
chr3	30732821	rs2276767	C	A	695.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:28,30:0.52:58
chr3	30769948	rs7617829	C	T	803.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:16,33:0.67:49
chr3	30842298	.	GACACACAC	G	583.73	.	AC=2;AF=1.00;AN=2;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=38.92;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr3	30842346	rs10553550	AAGAG	A	590.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.675;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.88;ReadPosRankSum=0.496;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:9,18:0.67:27
chr3	30842597	rs59931065	A	AT	517.73	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:27,22:0.45:49
chr3	30875317	rs115168311	C	A	1463.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:63,70:0.53:133
chr3	30875450	rs376759971	A	G	2343.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:118,113:0.49:231
chr3	30885806	rs1494738	T	C	13468.77	.	AC=2;AF=1.00;AN=2;DB;DP=507;set=Intersection	GT:AD:AF:DP	1/1:0,488:1.00:488
chr3	30903008	rs6774917	T	C	1489.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:85,63:0.43:148
chr3	30903304	rs1393745	C	T	4164.77	.	AC=1;AF=0.500;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	0/1:200,177:0.47:377
chr3	31574393	.	T	TTCCTCC	1816.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.378;ClippingRankSum=0.000;DP=108;ExcessHet=3.0103;FS=3.043;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=0.014;QD=17.81;ReadPosRankSum=0.339;SOR=1.040;set=HC	GT:AD:AF:DP	0/1:59,43:0.42:102
chr3	31621228	rs58289734	T	TAAA	3410.73	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr3	31642037	rs11713598	A	T	517.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:28,24:0.46:52
chr3	31658678	rs368561756	C	CTT	99.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.380;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.55;MQRankSum=1.457;QD=3.99;ReadPosRankSum=-0.492;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:15,10:0.40:25
chr3	31663476	rs80348727	C	T	287.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:11,11:0.50:22
chr3	31663515	rs10662891	A	AGTGTG	1885.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr3	31666357	rs79094690	C	A	1498.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:80,70:0.47:150
chr3	31677395	rs11129457	T	G	615.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr3	31705649	rs2305610	C	T	1323.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:125,74:0.37:199
chr3	31712176	rs3749406	G	T	946.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:46,42:0.48:88
chr3	31712393	rs3749405	C	T	3732.77	.	AC=1;AF=0.500;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	0/1:239,199:0.45:438
chr3	31839135	rs7653447	A	G	456.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:24,23:0.49:47
chr3	31839242	rs7643025	T	C	4213.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:132,196:0.60:328
chr3	32022333	.	GCA	G	78.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.680;ClippingRankSum=0.000;DP=84;ExcessHet=3.0103;FS=11.212;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.11;ReadPosRankSum=-0.500;SOR=2.712;set=HC	GT:AD:AF:DP	0/1:61,10:0.14:71
chr3	32433585	rs3732845	G	C	1476.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:48,74:0.61:122
chr3	32493682	rs342745	A	G	8962.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr3	32568145	rs35822941	CCA	C	1299.73	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:50,55:0.52:105
chr3	32571823	rs35467710	GA	G	105.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.241;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=3.073;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.20;ReadPosRankSum=1.918;SOR=0.313;set=HC	GT:AD:AF:DP	0/1:18,15:0.45:33
chr3	32746522	rs7429569	A	G	158.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:5,7:0.58:12
chr3	32758763	rs11129531	G	A	1006.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:39,49:0.56:88
chr3	32766905	rs6550155	A	G	1202.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:59,53:0.47:112
chr3	32774782	rs9798936	A	G	438.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr3	32801173	rs9832822	A	G	1526.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:73,67:0.48:140
chr3	32805828	.	C	CA	182.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.820;ClippingRankSum=0.000;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=0.000;QD=1.44;ReadPosRankSum=-0.983;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:96,31:0.24:127
chr3	32815231	rs2396631	A	T	1873.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr3	32915214	rs6799979	C	G	9919.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	1/1:0,342:1.00:342
chr3	32927509	rs6774703	G	T	7034.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr3	32933344	rs10630076	G	GTC	1333.73	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:97,55:0.36:152
chr3	32933360	.	C	CTT	1877.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.401;ClippingRankSum=0.000;DP=188;ExcessHet=3.0103;FS=11.391;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.23;ReadPosRankSum=4.033;SOR=2.030;set=HC	GT:AD:AF:DP	0/1:73,59:0.45:132
chr3	32995928	rs2228428	C	T	2786.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:104,132:0.56:236
chr3	33055721	rs4302331	A	G	5837.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr3	33063050	rs13093698	A	G	1913.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:42,72:0.63:114
chr3	33093190	rs12632196	T	C	5193.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr3	33099880	rs7637435	T	C	2167.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr3	33138544	rs7614776	A	G	38685.77	.	AC=2;AF=1.00;AN=2;DB;DP=868;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.67;SOR=0.712;set=HC	GT:AD:AF:DP	1/1:0,866:1.00:866
chr3	33138549	rs7637099	G	A	38745.77	.	AC=2;AF=1.00;AN=2;DB;DP=875;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.38;SOR=0.705;set=HC	GT:AD:AF:DP	1/1:0,873:1.00:873
chr3	33165303	rs4320036	C	G	522.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr3	33165436	rs6777433	T	A	2113.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr3	33171659	rs4392367	A	G	2731.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr3	33174156	rs1135127	T	G	3224.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:114,145:0.56:259
chr3	33174168	rs1135128	G	A	2595.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:95,110:0.54:205
chr3	33175793	rs4234239	C	A	5902.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr3	33175854	rs58617854	A	G	797.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:32,37:0.54:69
chr3	33194990	rs6810039	C	A	9735.77	.	AC=1;AF=0.500;AN=2;DB;DP=1104;set=Intersection	GT:AD:AF:DP	0/1:609,485:0.44:1094
chr3	33216357	rs57072412	G	A	3932.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:136,177:0.57:313
chr3	33255592	rs9637517	A	G	6038.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr3	33339136	.	C	CT	46.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.215;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;FS=1.442;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.02;ReadPosRankSum=0.313;SOR=0.430;set=HC	GT:AD:AF:DP	0/1:36,10:0.22:46
chr3	33359050	rs67505561	A	G	1392.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:28,61:0.69:89
chr3	33414923	rs2291898	G	A	1097.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:57,47:0.45:104
chr3	33419422	rs2291897	C	T	1042.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:39,44:0.53:83
chr3	33426883	rs17030546	C	G	671.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:26,28:0.52:54
chr3	33434831	rs2293250	G	A	2379.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:86,109:0.56:195
chr3	33434954	.	T	TA	94.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.788;ClippingRankSum=0.000;DP=152;ExcessHet=3.0103;FS=3.710;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=2.262;QD=0.73;ReadPosRankSum=-0.548;SOR=0.349;set=HC	GT:AD:AF:DP	0/1:105,25:0.19:130
chr3	33444286	rs623244	T	G	1228.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.491;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=0.627;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.84;ReadPosRankSum=0.493;SOR=0.618;set=HC	GT:AD:AF:DP	0/1:75,64:0.46:139
chr3	33454073	rs35702863	CA	C	647.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.439;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=2.552;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=0.975;QD=6.48;ReadPosRankSum=2.172;SOR=1.226;set=HC	GT:AD:AF:DP	0/1:36,64:0.64:100
chr3	33454342	rs2272152	G	A	3077.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:102,132:0.56:234
chr3	33458266	rs3736563	T	C	2467.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:112,121:0.52:233
chr3	33467364	rs61620772	T	TTTTAA	606.73	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:16,17:0.52:33
chr3	33481400	rs2272153	G	C	2508.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:60,104:0.63:164
chr3	33540329	rs6782108	T	C	1061.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:53,44:0.45:97
chr3	33552004	rs2049281	T	C	2596.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:66,113:0.63:179
chr3	33592978	rs34937822	A	AT	635.73	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:23,41:0.64:64
chr3	33605300	rs7643855	G	A	5940.77	.	AC=1;AF=0.500;AN=2;DB;DP=497;set=Intersection	GT:AD:AF:DP	0/1:227,262:0.54:489
chr3	33612364	rs67476972	TA	T	369.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.794;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=0.674;QD=10.56;ReadPosRankSum=0.167;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:6,29:0.83:35
chr3	33615874	rs9841413	G	A	580.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:18,27:0.60:45
chr3	33617790	rs4629282	A	G	2443.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:86,112:0.57:198
chr3	33618551	rs11391504	G	GA	1610.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.145;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=21.48;ReadPosRankSum=-0.902;SOR=1.416;set=HC	GT:AD:AF:DP	1/1:4,71:0.95:75
chr3	33626219	rs371484858	TA	T	210.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.748;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=2.090;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.97;ReadPosRankSum=0.882;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:45,26:0.37:71
chr3	33653622	rs6807542	T	G	655.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:25,29:0.54:54
chr3	33668662	rs72499357	ATTAAGT	A	2476.73	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:79,66:0.46:145
chr3	33725727	rs7628519	G	T	484.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:15,20:0.57:35
chr3	33725814	rs111738010	GA	G	80.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.060;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=1.666;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.39;ReadPosRankSum=-0.327;SOR=0.901;set=HC	GT:AD:AF:DP	0/1:164,42:0.20:206
chr3	33840114	rs1141054	T	C	2105.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr3	33852592	.	G	T	1295.77	.	AC=1;AF=0.500;AN=2;DP=86;set=Intersection	GT:AD:AF:DP	0/1:29,54:0.65:83
chr3	33853747	rs9851801	C	T	1733.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr3	33853764	rs150795546	GAAGA	G	1493.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr3	33863369	rs72619958	C	T	1598.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr3	33863683	rs3762817	A	T	1308.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr3	33866868	rs12488699	A	G	3221.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr3	33866929	rs12495243	G	T	624.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr3	33877508	rs3792595	T	A	3336.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr3	33877626	rs3792594	G	A	10760.77	.	AC=2;AF=1.00;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	1/1:0,414:1.00:414
chr3	33879602	rs78289090	CTA	C	1438.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr3	33887102	rs11928792	A	G	9372.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:0,339:1.00:339
chr3	33887178	rs11928817	A	T	2778.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;MQ=59.77;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr3	33893929	rs59048229	C	CTT	216.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.484;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.78;MQRankSum=0.808;QD=8.34;ReadPosRankSum=1.733;SOR=1.519;set=HC	GT:AD:AF:DP	0/1:9,17:0.65:26
chr3	33895391	rs3183982	A	G	6659.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr3	33905471	rs11922311	A	G	7616.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr3	33905566	rs1127732	C	T	12353.77	.	AC=2;AF=1.00;AN=2;DB;DP=478;set=Intersection	GT:AD:AF:DP	1/1:0,463:1.00:463
chr3	33905781	rs9848414	A	G	1426.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr3	33907835	rs5847794	T	TCTCC	3336.73	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr3	33907945	rs3183987	A	G	6360.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr3	35731725	rs1513476	C	T	288.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:23,14:0.38:37
chr3	35756778	rs2305233	A	T	1126.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:44,49:0.53:93
chr3	36422064	rs59881573	G	A	1435.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:41,55:0.57:96
chr3	36422126	rs113135397	C	T	6690.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.400;ClippingRankSum=0.000;DB;DP=285;ExcessHet=3.0103;FS=3.794;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.64;ReadPosRankSum=-0.691;SOR=0.482;set=HC	GT:AD:AF:DP	0/1:119,164:0.58:283
chr3	36422135	rs112766131	G	A	6789.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.522;ClippingRankSum=0.000;DB;DP=331;ExcessHet=3.0103;FS=2.607;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.64;ReadPosRankSum=0.899;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:148,181:0.55:329
chr3	36422216	rs73052248	T	C	11425.77	.	AC=1;AF=0.500;AN=2;DB;DP=959;set=Intersection	GT:AD:AF:DP	0/1:425,529:0.55:954
chr3	36422392	.	G	GGACCCGCCGAGACTTGAACGTCCGGTAA	3752.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.573;ClippingRankSum=0.000;DP=235;ExcessHet=3.0103;FS=8.524;MLEAC=1;MLEAF=0.500;MQ=60.73;MQRankSum=3.957;QD=20.18;ReadPosRankSum=-0.367;SOR=1.446;set=HC	GT:AD:AF:DP	0/1:88,98:0.53:186
chr3	36484823	rs3749279	C	T	624.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:26,27:0.51:53
chr3	36534540	rs2290528	G	A	2827.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:119,131:0.52:250
chr3	36545986	.	A	T	3557.77	.	AC=1;AF=0.500;AN=2;DP=364;set=Intersection	GT:AD:AF:DP	0/1:185,177:0.49:362
chr3	36570259	rs11305660	TA	T	545.73	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:43,39:0.48:82
chr3	36587541	rs9878872	C	G	1032.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:33,41:0.55:74
chr3	36759722	.	G	C	383.77	.	AC=1;AF=0.500;AN=2;DP=50;set=Intersection	GT:AD:AF:DP	0/1:29,20:0.41:49
chr3	36869879	rs149795549	A	AGAAG	529.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.818;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=1.574;MLEAC=1;MLEAF=0.500;MQ=60.67;MQRankSum=1.652;QD=19.62;ReadPosRankSum=-0.563;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:12,15:0.56:27
chr3	36884370	rs6771655	C	A	748.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:26,30:0.54:56
chr3	36887973	rs4678910	C	G	1234.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:39,52:0.57:91
chr3	36888064	rs4678911	G	T	154.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:13,8:0.38:21
chr3	36888575	rs12497299	C	T	790.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:84,43:0.34:127
chr3	36896653	rs9818599	G	C	5123.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr3	36897812	rs11712950	T	C	3673.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.450;ClippingRankSum=0.000;DB;DP=369;ExcessHet=3.0103;FS=0.795;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.23;ReadPosRankSum=0.757;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:188,171:0.48:359
chr3	36899593	rs7619089	C	T	878.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:79,50:0.39:129
chr3	36915524	rs4510338	T	C	2057.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:121,102:0.46:223
chr3	36915814	rs4296548	T	G	4035.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr3	36934343	rs5847939	CAT	C	1795.73	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:82,63:0.43:145
chr3	36934534	rs9832646	G	C	1488.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.774;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=0.550;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.23;ReadPosRankSum=0.950;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:104,77:0.43:181
chr3	36937106	rs11129741	G	A	2902.77	.	AC=1;AF=0.500;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	0/1:198,151:0.43:349
chr3	36940741	rs9864910	G	T	2046.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:141,105:0.43:246
chr3	37034946	rs1800734	G	A	720.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:34,32:0.48:66
chr3	37048633	rs4234259	A	G	2376.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:114,105:0.48:219
chr3	37053568	rs1799977	A	G	6506.77	.	AC=1;AF=0.500;AN=2;DB;DP=598;set=Intersection	GT:AD:AF:DP	0/1:281,313:0.53:594
chr3	37067095	rs71831268	ATATATTT	A	120.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.282;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.49;MQRankSum=0.000;QD=6.35;ReadPosRankSum=0.966;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:12,7:0.37:19
chr3	37067099	rs6771325	A	T	32.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.938;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.49;MQRankSum=0.000;QD=1.49;ReadPosRankSum=-0.547;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:17,5:0.23:22
chr3	37083740	rs9876116	A	G	3115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.618;ClippingRankSum=0.000;DB;DP=284;ExcessHet=3.0103;FS=2.616;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.17;ReadPosRankSum=0.598;SOR=0.873;set=HC	GT:AD:AF:DP	0/1:128,151:0.54:279
chr3	37096024	rs749072	T	C	5232.77	.	AC=1;AF=0.500;AN=2;DB;DP=558;MQ=60.02;set=Intersection	GT:AD:AF:DP	0/1:304,251:0.45:555
chr3	37096109	rs113420512	T	TAAC	4025.73	.	AC=1;AF=0.500;AN=2;DB;DP=163;MQ=60.07;set=Intersection	GT:AD:AF:DP	0/1:52,101:0.66:153
chr3	37100166	rs72523902	CAAA	C	730.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.170;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.05;ReadPosRankSum=1.437;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:25,31:0.55:56
chr3	37107022	rs7639375	C	A	3412.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:100,147:0.60:247
chr3	37107470	rs2302503	G	A	1543.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:69,74:0.52:143
chr3	37116386	rs2302504	G	T	3015.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:90,125:0.58:215
chr3	37133124	rs2302506	A	G	428.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:20,18:0.47:38
chr3	37144535	rs2302507	C	A	4972.77	.	AC=1;AF=0.500;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	0/1:174,219:0.56:393
chr3	37150988	rs6806252	C	G	2027.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:84,92:0.52:176
chr3	37163039	rs336595	G	A	3173.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr3	37170717	rs3733030	T	C	2063.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:109,107:0.50:216
chr3	37170750	rs3733029	G	C	1321.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:72,60:0.45:132
chr3	37285152	rs2271548	C	T	1663.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:53,70:0.57:123
chr3	37308262	rs73059487	A	T	2611.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:105,120:0.53:225
chr3	37308532	rs1040073	C	T	852.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:28,37:0.57:65
chr3	37327628	.	TC	T	411	.	AC=1;AF=0.500;AN=2;BRF=0.43;FR=0.5068;HP=2;HapScore=4;MGOF=28;MMLQ=15;MQ=54.47;NF=1;NR=12;PP=411;QD=33.3846153846;SC=GATATTTCTTTCTTTTTTTTT;SbPval=0.9;Source=Platypus;TC=29;TCF=5;TCR=24;TR=13;WE=37327643;WS=37327618;set=Platypus	GT:AD:AF:DP	0/1:16,13:0.45:29
chr3	37327629	rs58146171	C	T	454.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.183;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.15;MQRankSum=0.112;QD=13.38;ReadPosRankSum=-0.773;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:11,23:0.68:34
chr3	37365822	.	A	G	6718.77	.	AC=1;AF=0.500;AN=2;DP=707;set=Intersection	GT:AD:AF:DP	0/1:368,330:0.47:698
chr3	37366459	rs11718848	C	A	4929.77	.	AC=1;AF=0.500;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	0/1:211,234:0.53:445
chr3	37368755	rs62241896	T	A	4272.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:145,174:0.55:319
chr3	37369771	rs5847960	ACTCT	A	1306.73	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:40,38:0.49:78
chr3	37376500	rs11396224	C	CT	662.73	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:31,38:0.55:69
chr3	37388577	rs3832257	C	CA	92.73	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:14,5:0.26:19
chr3	37396791	rs62241898	T	A	614.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:32,26:0.45:58
chr3	37407489	rs17266090	A	G	3606.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:150,166:0.53:316
chr3	37407664	rs62241901	G	T	2039.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:87,91:0.51:178
chr3	37458758	rs113724034	A	C	2441.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:171,118:0.41:289
chr3	37512646	rs11713408	TG	CC	16783.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,377:1.00:377
chr3	38087024	rs36046028	C	T	3958.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr3	38134438	rs11129778	A	G	4178.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr3	38159546	rs71323653	G	A	476.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:26,19:0.42:45
chr3	38207265	.	CGCG	C	146.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.326;ClippingRankSum=0.000;DP=103;ExcessHet=3.0103;FS=1.269;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.47;ReadPosRankSum=-0.132;SOR=0.426;set=HC	GT:AD:AF:DP	0/1:89,11:0.11:100
chr3	38348686	rs753330	T	G	6705.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:1,240:1.00:241
chr3	38350479	rs818819	T	C	8958.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:0,332:1.00:332
chr3	38350519	rs818818	G	A	10922.77	.	AC=2;AF=1.00;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	1/1:0,406:1.00:406
chr3	38350543	rs818817	A	G	10951.77	.	AC=2;AF=1.00;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	1/1:0,414:1.00:414
chr3	38350630	rs704929	C	A	10220.77	.	AC=2;AF=1.00;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	1/1:0,365:1.00:365
chr3	38354390	rs695939	A	G	2464.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:1,97:0.99:98
chr3	38355176	rs11268633	T	TGTGTGTGTGTGTGCGCGCGC,TGTGTGTGTGTGTGTGCGCGCGC	1941.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=58;set=Intersection	GT:AF:DP	1/2:0.24,0.73:41
chr3	38355509	rs696253	C	T	1531.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr3	38389891	.	C	T	1006.77	.	AC=1;AF=0.500;AN=2;DP=89;set=Intersection	GT:AD:AF:DP	0/1:42,46:0.52:88
chr3	38390020	rs2615631	C	A	10190.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:0,378:1.00:378
chr3	38401677	rs818851	C	T	1874.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr3	38401839	rs818850	T	C	5215.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:1,201:1.00:202
chr3	38401918	rs818849	A	G	2767.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr3	38402007	rs818848	T	A	348.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr3	38404472	rs17118	C	A	1440.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:75,75:0.50:150
chr3	38406648	rs704942	T	C	4597.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr3	38406773	rs704943	G	T	3342.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr3	38406793	rs2234608	T	G	2925.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr3	38408248	rs704946	G	A	6516.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr3	38408361	rs843890	G	A	13854.77	.	AC=2;AF=1.00;AN=2;DB;DP=532;set=Intersection	GT:AD:AF:DP	1/1:0,529:1.00:529
chr3	38408459	rs2234617	A	G	4404.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr3	38409600	rs704947	T	G	6396.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr3	38411731	rs150130857	G	GCACACACACACA	1109.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.19;QD=36.99;SOR=2.494;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr3	38416079	rs77540883	C	T	3671.77	.	AC=1;AF=0.500;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	0/1:213,184:0.46:397
chr3	38442490	rs2070488	G	A	2904.77	.	AC=1;AF=0.500;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	0/1:233,153:0.40:386
chr3	38519424	rs2070489	A	G	2297.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:158,116:0.42:274
chr3	38521156	rs13097628	T	C	4962.77	.	AC=1;AF=0.500;AN=2;DB;DP=602;set=Intersection	GT:AD:AF:DP	0/1:334,257:0.43:591
chr3	38524742	rs1046048	C	T	5108.77	.	AC=1;AF=0.500;AN=2;DB;DP=585;set=Intersection	GT:AD:AF:DP	0/1:315,262:0.45:577
chr3	38538466	rs1984312	G	T	891.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:34,37:0.52:71
chr3	38539095	rs376690919	CTT	C	713.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.193;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=1.020;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.43;ReadPosRankSum=1.765;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:48,48:0.50:96
chr3	38540264	rs6779704	A	T	1309.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:48,61:0.56:109
chr3	38540541	rs2300668	A	G	781.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:27,34:0.56:61
chr3	38541318	rs2300669	C	A	1602.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:59,73:0.55:132
chr3	38541452	rs9877282	A	G	540.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:11,21:0.66:32
chr3	38545349	rs6599206	C	T	130.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:8,6:0.43:14
chr3	38592406	rs1805126	A	G	8135.77	.	AC=1;AF=0.500;AN=2;DB;DP=696;set=Intersection	GT:AD:AF:DP	0/1:310,375:0.55:685
chr3	38593128	.	TG	T	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.148;ClippingRankSum=0.000;DP=53;ExcessHet=3.0103;FS=8.980;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.12;ReadPosRankSum=-0.570;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:24,7:0.23:31
chr3	38601556	rs6799868	T	C	2345.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:60,98:0.62:158
chr3	38622467	rs7430407	T	C	12630.77	.	AC=2;AF=1.00;AN=2;DB;DP=465;set=Intersection	GT:AD:AF:DP	1/1:0,460:1.00:460
chr3	38627629	rs7645173	A	G	4202.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr3	38627658	rs112524625	T	TCC	1923.73	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:2,55:0.96:57
chr3	38648062	rs6599222	C	T	2460.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr3	38674712	rs6599230	T	C	5640.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr3	38739574	rs6599241	T	C	10888.77	.	AC=2;AF=1.00;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	1/1:0,408:1.00:408
chr3	38739845	rs6599242	A	G	11545.77	.	AC=2;AF=1.00;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	1/1:0,409:1.00:409
chr3	38748833	rs6790627	T	C	1927.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:115,98:0.46:213
chr3	38749026	rs6599248	T	A	1662.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:52,78:0.60:130
chr3	38764782	rs4076737	G	T	1146.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:51,46:0.47:97
chr3	38766675	rs6795970	A	G	1805.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:118,86:0.42:204
chr3	38766825	rs11129804	A	G	3311.77	.	AC=1;AF=0.500;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	0/1:209,161:0.44:370
chr3	38768334	rs7374804	T	C	3250.77	.	AC=1;AF=0.500;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	0/1:188,144:0.43:332
chr3	38768668	.	G	T	854.77	.	AC=1;AF=0.500;AN=2;DP=63;set=Intersection	GT:AD:AF:DP	0/1:27,36:0.57:63
chr3	38784029	rs6599250	T	C	1874.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:148,93:0.39:241
chr3	38791507	rs12054245	C	T	577.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:65,28:0.30:93
chr3	38805157	rs78916443	G	A	819.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:39,33:0.46:72
chr3	38812650	rs10212338	G	A	853.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:28,37:0.57:65
chr3	38812708	rs4420804	C	T	1660.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:100,80:0.44:180
chr3	38911972	rs4133368	C	T	89.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:16,6:0.27:22
chr3	38913569	rs4077939	G	T	403.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:17,16:0.48:33
chr3	38926912	rs6599266	C	G	2676.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:135,124:0.48:259
chr3	38938299	rs5848481	C	CT	1029.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.419;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.26;MQRankSum=0.437;QD=13.73;ReadPosRankSum=0.235;SOR=1.071;set=HC	GT:AD:AF:DP	1/1:12,63:0.84:75
chr3	38945560	rs4073113	A	G	3053.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:108,135:0.56:243
chr3	38946872	rs4514993	A	T	2688.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr3	38949363	rs6599267	A	C	3247.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr3	38951437	rs11720056	T	C	372.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.534;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.47;ReadPosRankSum=0.592;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:26,18:0.41:44
chr3	38951753	rs7429404	T	C	1298.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr3	38961537	rs6779297	T	C	2186.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr3	38967042	rs73068563	C	T	2495.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:135,122:0.47:257
chr3	38967103	rs4676474	C	T	1255.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:41,50:0.55:91
chr3	39093326	rs6599003	G	A	8639.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,319:1.00:319
chr3	39107993	rs10510698	T	G	2219.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr3	39111140	rs2293312	C	A	8213.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr3	39118745	rs3732375	A	G	3024.77	.	AC=1;AF=0.500;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	0/1:225,157:0.41:382
chr3	39121119	rs17038400	G	C	456.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:39,23:0.37:62
chr3	39129742	rs3736573	A	C	7824.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr3	39133085	rs2272217	T	G	822.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:65,44:0.40:109
chr3	39135986	rs79218984	C	T	640.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:23,28:0.55:51
chr3	39141096	rs1122818	A	G	184.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr3	39142624	rs41285138	G	A	4070.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.567;ClippingRankSum=0.000;DB;DP=367;ExcessHet=3.0103;FS=4.191;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.25;ReadPosRankSum=1.099;SOR=0.915;set=HC	GT:AD:AF:DP	0/1:172,190:0.52:362
chr3	39145186	rs7629643	G	A	1906.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:44,77:0.64:121
chr3	39149092	rs6786764	A	G	12311.77	.	AC=2;AF=1.00;AN=2;DB;DP=448;set=Intersection	GT:AD:AF:DP	1/1:0,444:1.00:444
chr3	39149180	rs6786855	A	G	5916.77	.	AC=1;AF=0.500;AN=2;DB;DP=556;set=Intersection	GT:AD:AF:DP	0/1:279,264:0.49:543
chr3	39149489	rs28362643	C	T	3008.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:175,142:0.45:317
chr3	39152248	rs7613766	C	G	286.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:35,17:0.33:52
chr3	39152345	rs1112438	G	A	1423.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:105,71:0.40:176
chr3	39152575	rs7614000	C	G	1328.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:77,64:0.45:141
chr3	39161456	rs1274972	G	A	7669.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.854;ClippingRankSum=0.000;DB;DP=501;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.46;ReadPosRankSum=-1.971;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:289,207:0.42:496
chr3	39161464	rs1274971	G	A	7648.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.664;ClippingRankSum=0.000;DB;DP=498;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.51;ReadPosRankSum=-1.242;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:289,204:0.41:493
chr3	39166484	rs784508	C	T	763.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:96,42:0.30:138
chr3	39166509	rs784507	A	G	1138.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:96,60:0.38:156
chr3	39166743	rs2669852	T	C	1271.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr3	39167905	rs784506	G	A	2188.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:92,99:0.52:191
chr3	39169693	rs1298712	A	G	690.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:28,30:0.52:58
chr3	39169712	rs1274969	T	C	1099.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:34,51:0.60:85
chr3	39175576	rs784492	G	T	630.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:24,25:0.51:49
chr3	39178899	rs784495	C	T	3756.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:151,170:0.53:321
chr3	39179909	rs784497	G	A	2986.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:70,121:0.63:191
chr3	39180099	rs784498	T	C	6236.77	.	AC=1;AF=0.500;AN=2;DB;DP=500;set=Intersection	GT:AD:AF:DP	0/1:208,288:0.58:496
chr3	39180162	rs811969	A	C	6722.77	.	AC=1;AF=0.500;AN=2;DB;DP=574;MQ=60.02;set=Intersection	GT:AD:AF:DP	0/1:256,314:0.55:570
chr3	39180263	rs704959	G	A	3255.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:118,143:0.55:261
chr3	39184959	rs1274958	C	T	4372.77	.	AC=1;AF=0.500;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	0/1:254,206:0.45:460
chr3	39185077	rs1274957	G	A	7730.77	.	AC=1;AF=0.500;AN=2;DB;DP=661;set=Intersection	GT:AD:AF:DP	0/1:296,359:0.55:655
chr3	39185248	rs784519	A	G	4691.77	.	AC=1;AF=0.500;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	0/1:180,208:0.54:388
chr3	39185968	rs810743	A	G	936.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:20,38:0.66:58
chr3	39186728	rs784517	C	T	2725.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:91,123:0.57:214
chr3	39226127	rs3732383	C	T	4223.77	.	AC=1;AF=0.500;AN=2;DB;DP=566;set=Intersection	GT:AD:AF:DP	0/1:343,212:0.38:555
chr3	39227664	rs61736155	G	A	2398.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:176,115:0.40:291
chr3	39228043	rs11711871	T	G	2128.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:128,103:0.45:231
chr3	39229900	rs6805248	T	C	12022.77	.	AC=2;AF=1.00;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	1/1:0,442:1.00:442
chr3	39230997	rs2271487	A	G	608.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:48,30:0.38:78
chr3	39307162	rs3732378	G	A	4514.77	.	AC=1;AF=0.500;AN=2;DB;DP=468;set=Intersection	GT:AD:AF:DP	0/1:238,218:0.48:456
chr3	39307256	rs3732379	C	T	5060.77	.	AC=1;AF=0.500;AN=2;DB;DP=565;set=Intersection	GT:AD:AF:DP	0/1:311,245:0.44:556
chr3	39308293	rs4271863	A	T	340.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.550;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=4.998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.20;ReadPosRankSum=1.758;SOR=0.225;set=HC	GT:AD:AF:DP	0/1:33,22:0.40:55
chr3	39323163	rs11715522	A	C	3095.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:190,145:0.43:335
chr3	39373902	rs2853699	C	G	3282.77	.	AC=1;AF=0.500;AN=2;DB;DP=501;set=Intersection	GT:AD:AF:DP	0/1:319,177:0.36:496
chr3	39431081	rs2270770	G	A	3190.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:142,149:0.51:291
chr3	39433147	rs1995236	G	A	10473.77	.	AC=2;AF=1.00;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	1/1:0,393:1.00:393
chr3	39437714	rs73058289	A	T	732.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.102;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.64;ReadPosRankSum=0.699;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:34,42:0.55:76
chr3	39437800	rs9877539	A	G	8802.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:0,325:1.00:325
chr3	39448581	rs3772143	T	G	2439.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:104,112:0.52:216
chr3	39448620	rs11706951	T	C	1810.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:67,79:0.54:146
chr3	39449137	rs1803893	T	C	663.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:52,33:0.39:85
chr3	39452123	rs2077797	G	A	3123.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.264;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=3.241;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.11;ReadPosRankSum=-0.454;SOR=1.007;set=HC	GT:AD:AF:DP	0/1:70,78:0.53:148
chr3	39452129	rs2077799	G	T	3329.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.309;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=2.072;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.06;ReadPosRankSum=-1.625;SOR=0.884;set=HC	GT:AD:AF:DP	0/1:75,91:0.55:166
chr3	39453610	rs2723	C	T	2365.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:76,104:0.58:180
chr3	39541386	rs1708057	T	C	486.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:40,24:0.38:64
chr3	39541478	rs1768241	A	G	1630.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:123,88:0.42:211
chr3	39541550	rs1708059	A	G	1718.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:124,89:0.42:213
chr3	39541713	rs1768242	T	A	164.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:17,8:0.32:25
chr3	39543487	rs1612165	A	T	266.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:8,10:0.56:18
chr3	39554946	rs552724	C	T	4627.77	.	AC=1;AF=0.500;AN=2;DB;DP=497;set=Intersection	GT:AD:AF:DP	0/1:262,231:0.47:493
chr3	40208247	rs10460959	G	T	1696.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:68,76:0.53:144
chr3	40208450	rs12494283	C	G	2934.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:85,122:0.59:207
chr3	40231883	rs1317317	C	T	10476.77	.	AC=2;AF=1.00;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	1/1:1,384:1.00:385
chr3	40286017	rs4618168	T	C	7948.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr3	40351484	rs11709089	C	T	8769.77	.	AC=1;AF=0.500;AN=2;DB;DP=729;set=Intersection	GT:AD:AF:DP	0/1:318,408:0.56:726
chr3	40352355	rs35523102	AT	A	1416.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.764;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=0.644;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.152;QD=7.30;ReadPosRankSum=-0.525;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:68,126:0.65:194
chr3	40352884	rs1454492	C	T	1365.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:45,60:0.57:105
chr3	40353259	rs1470937	T	G	884.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr3	40353425	rs34544743	CAG	C	826.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:20,22:0.52:42
chr3	40435890	rs72861689	A	G	2275.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:82,103:0.56:185
chr3	40442280	rs9875245	G	T	829.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:16,30:0.65:46
chr3	40442574	rs112091498	AGAGGTCC	A	1202.73	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:27,32:0.54:59
chr3	40468896	rs1047855	C	T	5128.77	.	AC=1;AF=0.500;AN=2;DB;DP=486;set=Intersection	GT:AD:AF:DP	0/1:229,249:0.52:478
chr3	40498720	rs17524303	TACGC	T	1442.73	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:29,41:0.59:70
chr3	40498845	rs2276868	C	T	1936.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:109,97:0.47:206
chr3	40498933	rs4973904	A	G	4187.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr3	40503520	.	A	ACTGCTGCTG,ACTGCTGCTGCTGCTG	9554.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=274;set=Intersection	GT:AF:DP	1/2:0.58,0.42:216
chr3	40503809	rs11539046	G	A	1969.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:118,87:0.42:205
chr3	40503864	.	C	CTTT	108.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150;ClippingRankSum=-0.000;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.59;ReadPosRankSum=1.150;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chr3	40505886	rs11129881	C	G	2784.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr3	40519429	rs4553952	T	C	1583.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr3	40519532	rs4128740	C	A	1251.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:47,59:0.56:106
chr3	40557271	rs10550548	TTG	T	557.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.502;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=2.071;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.97;ReadPosRankSum=0.136;SOR=0.464;set=HC	GT:AD:AF:DP	0/1:46,34:0.42:80
chr3	40557309	rs58487114	GT	G	1158.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.069;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=3.272;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.99;ReadPosRankSum=1.618;SOR=1.180;set=HC	GT:AD:AF:DP	0/1:83,62:0.43:145
chr3	40557311	rs56754874	GA	G	217.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.037;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=1.956;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.02;ReadPosRankSum=1.603;SOR=0.986;set=HC	GT:AD:AF:DP	0/1:84,24:0.22:108
chr3	40557312	.	A	G	1024	.	AC=1;AF=0.500;AN=2;BRF=0.37;FR=0.5000;HP=1;HapScore=2;MGOF=18;MMLQ=22;MQ=60.0;NF=43;NR=30;PP=1024;QD=14.5037152404;SC=TGTGTGTGTGATATCAGGGAC;SbPval=0.55;Source=Platypus;TC=126;TCF=74;TCR=52;TR=73;WE=40557320;WS=40557302;set=Platypus	GT:AD:AF:DP	0/1:53,73:0.58:126
chr3	41274764	rs2691680	C	A	2214.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr3	41274815	rs2293302	C	G	2253.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:84,97:0.54:181
chr3	41277040	rs11564465	C	T	163.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:15,8:0.35:23
chr3	41288627	rs78306021	C	T	1157.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:26,49:0.65:75
chr3	41291081	rs2293304	G	A	2500.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:125,117:0.48:242
chr3	41439790	rs1487571	T	C	698.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.056;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=0.889;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.60;ReadPosRankSum=0.664;SOR=0.537;set=HC	GT:AD:AF:DP	0/1:57,35:0.38:92
chr3	41504866	rs2291758	A	G	296.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:15,13:0.46:28
chr3	41607701	rs1565957	C	G	3004.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr3	41841716	rs4973986	A	C	1771.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:168,93:0.36:261
chr3	41877473	.	CA	C	81.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.579;ClippingRankSum=0.000;DP=207;ExcessHet=3.0103;FS=4.777;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.50;ReadPosRankSum=-0.890;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:126,36:0.22:162
chr3	41923513	rs59960840	GAGGCC	GGGCC,G	4091.73	.	AC=2,0;AF=1.00,0.00;ALERT;AN=2;DB;DP=93;set=Intersection	GT:AF:DP	1/1:1.00:91
chr3	41923515	rs61575884	GGCCA	G	4093.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.50;SOR=2.935;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr3	41923519	.	A	G	1692	.	AC=2;AF=1.00;AN=2;BRF=0.25;FR=1.0000;HP=2;HapScore=1;MGOF=2;MMLQ=28;MQ=60.0;NF=58;NR=14;PP=1692;QD=23.9829335076;SC=GAATGAGGCCATCACATCACC;SbPval=0.56;Source=Platypus;TC=85;TCF=68;TCR=17;TR=72;WE=41923527;WS=41923503;set=Platypus	GT:AD:AF:DP	1/1:13,72:0.85:85
chr3	41925260	rs113374533	CAGAGAAAAAACAAGTGA	C	2501.73	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr3	41925301	rs1716685	T	C	2837.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr3	41925398	rs1052501	C	T	18112.77	.	AC=2;AF=1.00;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	1/1:0,407:1.00:407
chr3	41925423	rs1716687	T	C	19650.77	.	AC=2;AF=1.00;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	1/1:0,470:1.00:470
chr3	41937000	rs1717003	C	T	740.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr3	41938500	rs1717005	G	C	3689.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:1,133:0.99:134
chr3	41939993	rs1625226	T	A	2273.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:15,109:0.88:124
chr3	41942199	rs1717007	T	C	10630.77	.	AC=2;AF=1.00;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	1/1:0,393:1.00:393
chr3	41952781	rs1716991	C	T	7832.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr3	41957466	rs1716698	T	G	3608.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr3	41960006	rs1716975	T	C	1385.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.65;SOR=1.358;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr3	41961168	rs1716979	T	C	2595.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr3	41977214	rs3934103	C	T	1394.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr3	41977488	rs58069203	CCT	C	19526.73	.	AC=2;AF=1.00;AN=2;DB;DP=448;set=Intersection	GT:AD:AF:DP	1/1:0,438:1.00:438
chr3	41996136	rs2272007	T	C	22307.77	.	AC=2;AF=1.00;AN=2;DB;DP=813;set=Intersection	GT:AD:AF:DP	1/1:0,812:1.00:812
chr3	41996275	rs7651623	A	G	9712.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	1/1:0,348:1.00:348
chr3	42202061	rs4974003	G	T	401.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.187;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=0.741;MLEAC=1;MLEAF=0.500;MQ=60.59;MQRankSum=3.776;QD=2.79;ReadPosRankSum=0.600;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:98,46:0.32:144
chr3	42251577	.	CGGA	C	615.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.287;ClippingRankSum=0.000;DP=605;ExcessHet=3.0103;FS=0.897;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.37;ReadPosRankSum=-0.732;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:404,45:0.10:449
chr3	42305131	rs754635	C	G	3377.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr3	42438754	rs13054	T	C	7878.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr3	42445679	rs40416	C	A	1858.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr3	42448296	rs33518	T	C	15446.77	.	AC=2;AF=1.00;AN=2;DB;DP=576;set=Intersection	GT:AD:AF:DP	1/1:4,567:0.99:571
chr3	42555524	rs2278215	G	A	441.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:19,22:0.54:41
chr3	42597410	rs144058451	C	T	2737.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:203,134:0.40:337
chr3	42660489	rs10712209	CT	C	278.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.358;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=1.729;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.140;QD=2.53;ReadPosRankSum=1.198;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:70,40:0.36:110
chr3	42687278	rs73085333	C	T	1481.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr3	42700895	.	G	A	649.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.545;ClippingRankSum=0.000;DP=53;ExcessHet=3.0103;FS=9.465;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.26;ReadPosRankSum=-0.706;SOR=0.036;set=HC	GT:AD:AF:DP	0/1:25,28:0.53:53
chr3	42799554	.	TAC	T	421.73	.	AC=1;AF=0.500;AN=2;DP=72;set=Intersection	GT:AD:AF:DP	0/1:28,23:0.45:51
chr3	42799858	rs339678	T	A	2269.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr3	42835889	rs6764909	A	G	476.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr3	42915878	rs735320	C	T	1872.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:132,95:0.42:227
chr3	42917047	rs9865715	A	G	10693.77	.	AC=2;AF=1.00;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	1/1:0,383:1.00:383
chr3	42947776	rs6789928	T	C	609.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr3	42947793	rs9832875	C	T	192.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:14,11:0.44:25
chr3	42950181	rs7617715	C	T	607.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:33,27:0.45:60
chr3	42954912	rs11129987	C	T	652.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:7,27:0.79:34
chr3	42956273	rs1427801	T	C	4971.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr3	42956984	rs834579	A	G	470.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:16,19:0.54:35
chr3	43021088	rs6763762	G	A	401.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:38,22:0.37:60
chr3	43021383	rs6775999	C	T	449.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:19,23:0.55:42
chr3	43074871	rs588335	A	G	11322.77	.	AC=2;AF=1.00;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	1/1:0,423:1.00:423
chr3	43095101	rs536119	A	G	4301.77	.	AC=1;AF=0.500;AN=2;DB;DP=492;set=Intersection	GT:AD:AF:DP	0/1:270,221:0.45:491
chr3	43095245	rs2280565	A	G	6174.77	.	AC=1;AF=0.500;AN=2;DB;DP=500;set=Intersection	GT:AD:AF:DP	0/1:204,290:0.59:494
chr3	43121559	rs604033	C	T	4128.77	.	AC=1;AF=0.500;AN=2;DB;DP=484;set=Intersection	GT:AD:AF:DP	0/1:270,212:0.44:482
chr3	43122966	rs2936818	G	A	1404.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:92,72:0.44:164
chr3	43414318	rs6441771	A	G	4193.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr3	43591142	rs12638282	G	A	2507.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr3	43592906	rs9829081	T	C	12961.77	.	AC=2;AF=1.00;AN=2;DB;DP=487;set=Intersection	GT:AD:AF:DP	1/1:0,474:1.00:474
chr3	43602803	rs3772165	C	T	8721.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:0,329:1.00:329
chr3	43607136	rs7616708	T	C	738.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.63;SOR=2.019;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr3	43642126	rs6441785	C	A	3982.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr3	43732371	rs74845403	A	G	334.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:7,14:0.67:21
chr3	43753078	rs17075899	A	G	467.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:20,17:0.46:37
chr3	43756577	rs10662733	C	CTGTG,CTGTGTGTG	5775.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=397;set=Intersection	GT:AF:DP	1/2:0.49,0.43:158
chr3	43760062	rs887472	T	G	5588.77	.	AC=1;AF=0.500;AN=2;DB;DP=470;set=Intersection	GT:AD:AF:DP	0/1:207,255:0.55:462
chr3	44283525	rs9850927	A	G	346.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr3	44283672	rs9833423	T	C	2296.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr3	44283808	rs7645375	C	A	5010.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr3	44284584	rs9284879	G	A	4633.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr3	44296403	rs4682960	T	C	3243.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:1,117:0.99:118
chr3	44310592	rs5004668	T	C	825.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr3	44329394	rs11294162	TG	T	3261.73	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr3	44332176	rs1488637	T	C	6497.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr3	44362408	rs9857957	G	A	668.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr3	44399668	rs4682970	T	C	4121.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.25;SOR=1.565;set=HC	GT:AD:AF:DP	1/1:0,157:1.00:157
chr3	44408864	rs372993721	G	GT	1172.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr3	44437870	rs6441838	A	C	3767.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr3	44489880	rs11710965	T	C	6884.77	.	AC=1;AF=0.500;AN=2;DB;DP=626;set=Intersection	GT:AD:AF:DP	0/1:301,316:0.51:617
chr3	44540791	rs36046723	TTC	T	15870.73	.	AC=2;AF=1.00;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	1/1:0,401:1.00:401
chr3	44599103	rs2293600	T	G	324.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:31,14:0.31:45
chr3	44607013	rs13081859	T	C	7664.77	.	AC=1;AF=0.500;AN=2;DB;DP=680;set=Intersection	GT:AD:AF:DP	0/1:307,354:0.54:661
chr3	44609626	rs6765468	G	A	984.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:33,41:0.55:74
chr3	44611896	rs9835485	A	G	5847.77	.	AC=1;AF=0.500;AN=2;DB;DP=486;set=Intersection	GT:AD:AF:DP	0/1:231,250:0.52:481
chr3	44612050	rs9873604	C	T	13694.77	.	AC=2;AF=1.00;AN=2;DB;DP=491;set=Intersection	GT:AD:AF:DP	1/1:1,486:1.00:487
chr3	44612895	rs2034476	C	G	3354.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:139,155:0.53:294
chr3	44635461	rs13319803	G	A	1077.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.677;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=2.536;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.98;ReadPosRankSum=0.319;SOR=0.461;set=HC	GT:AD:AF:DP	0/1:67,53:0.44:120
chr3	44635916	.	C	G	4682.77	.	AC=1;AF=0.500;AN=2;DP=533;set=Intersection	GT:AD:AF:DP	0/1:293,234:0.44:527
chr3	44673430	rs28699350	G	C	879.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:30,35:0.54:65
chr3	44762830	rs56084453	A	G	2562.77	.	AC=1;AF=0.500;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	0/1:179,132:0.42:311
chr3	44763037	rs7640654	A	C	1623.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:94,74:0.44:168
chr3	44775962	rs4682752	A	G	3339.77	.	AC=1;AF=0.500;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	0/1:199,170:0.46:369
chr3	44794656	.	A	G	247.77	.	AC=1;AF=0.500;AN=2;DP=19;set=Intersection	GT:AD:AF:DP	0/1:9,10:0.53:19
chr3	44803108	rs56236286	AAAGACAG	A	11497.73	.	AC=1;AF=0.500;AN=2;DB;DP=850;set=Intersection	GT:AD:AF:DP	0/1:472,309:0.40:781
chr3	44816952	rs10574346	CTT	C	825.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.387;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.986;QD=7.94;ReadPosRankSum=0.752;SOR=0.599;set=HC	GT:AD:AF:DP	0/1:62,42:0.40:104
chr3	44826315	rs56895721	G	GT	276.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.505;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=2.622;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.89;ReadPosRankSum=1.100;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:26,21:0.45:47
chr3	44827793	rs7642843	T	C	825.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:26,32:0.55:58
chr3	44840612	rs5848711	A	AT	1043.73	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:49,35:0.42:84
chr3	44854476	.	C	CA	68.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.959;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=4.012;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=1.447;QD=1.86;ReadPosRankSum=0.079;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:26,11:0.30:37
chr3	44854563	rs3762636	A	G	1365.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:102,73:0.42:175
chr3	44869026	rs4682999	A	T	8246.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chr3	44871505	rs11710339	A	T	4688.77	.	AC=1;AF=0.500;AN=2;DB;DP=489;set=Intersection	GT:AD:AF:DP	0/1:251,230:0.48:481
chr3	44882784	rs6766221	C	T	125.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:10,8:0.44:18
chr3	44884647	rs3804583	C	A	3258.77	.	AC=1;AF=0.500;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	0/1:267,169:0.39:436
chr3	44906746	rs10429	A	G	2868.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:161,135:0.46:296
chr3	45042934	.	C	CA	84.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.316;ClippingRankSum=0.000;DP=90;ExcessHet=3.0103;FS=6.650;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.01;ReadPosRankSum=0.345;SOR=1.695;set=HC	GT:AD:AF:DP	0/1:67,17:0.20:84
chr3	45127515	rs9874077	T	C	7997.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr3	45132637	rs1879240	T	C	1966.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr3	45134822	rs3749191	T	C	2099.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:143,107:0.43:250
chr3	45137087	rs2037358	T	G	2095.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr3	45187671	rs1863837	C	T	6835.77	.	AC=1;AF=0.500;AN=2;DB;DP=678;set=Intersection	GT:AD:AF:DP	0/1:334,329:0.50:663
chr3	45266662	.	A	G	1240.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.726;ClippingRankSum=0.000;DP=136;ExcessHet=3.0103;FS=1.650;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.98;ReadPosRankSum=-1.073;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:50,63:0.56:113
chr3	45267058	rs33750	G	A	259.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:7,11:0.61:18
chr3	45267310	rs41118	C	T	523.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.094;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=2.984;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.96;ReadPosRankSum=-1.640;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:19,16:0.46:35
chr3	45267321	rs395917	C	T	483.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:18,14:0.44:32
chr3	45461102	rs11383389	G	GT	4231.73	.	AC=1;AF=0.500;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	0/1:202,170:0.46:372
chr3	45500174	rs745551	C	A	5031.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.947;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=4.215;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=31.25;ReadPosRankSum=-1.022;SOR=1.096;set=HC	GT:AD:AF:DP	1/1:1,160:0.99:161
chr3	45515648	rs11919039	T	C	855.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:24,34:0.59:58
chr3	45517799	rs3733117	T	C	1412.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr3	45527099	rs7640603	C	G	5142.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr3	45527218	rs7610357	T	C	9857.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:0,359:1.00:359
chr3	45530401	rs3733116	G	A	2279.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:65,103:0.61:168
chr3	45533224	rs2128361	G	A	12671.77	.	AC=2;AF=1.00;AN=2;DB;DP=490;set=Intersection	GT:AD:AF:DP	1/1:2,477:1.00:479
chr3	45537973	rs12638088	C	T	959.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:66,46:0.41:112
chr3	45542083	rs2306522	T	C	2092.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:34,78:0.70:112
chr3	45557707	rs11549809	G	A	1920.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:139,99:0.42:238
chr3	45559519	rs2170549	T	C	7570.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr3	45559621	rs2276860	C	T	853.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:34,36:0.51:70
chr3	45565554	rs267220	A	G	6154.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr3	45583297	rs34191038	C	T	1335.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:46,58:0.56:104
chr3	45636335	rs267238	A	G	372.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:9,17:0.65:26
chr3	45637253	rs267237	C	T	4996.77	.	AC=1;AF=0.500;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	0/1:193,221:0.53:414
chr3	45637439	rs267236	T	C	4759.77	.	AC=1;AF=0.500;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	0/1:209,215:0.51:424
chr3	45637830	rs13086458	A	G	1293.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:61,60:0.50:121
chr3	45677635	rs11379880	C	CT	22069.73	.	AC=2;AF=1.00;AN=2;DB;DP=502;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.95;SOR=0.773;set=HC	GT:AD:AF:DP	1/1:0,491:1.00:491
chr3	45677637	.	GCA	TGC	2937	.	AC=2;AF=1.00;AN=2;BRF=0.43;FR=1.0000;HP=1;HapScore=1;MGOF=2;MMLQ=25;MQ=60.0;NF=162;NR=131;PP=2937;QD=20;SC=CTCTTGTCCTGCAAGGAGCCT;SbPval=0.69;Source=Platypus;TC=327;TCF=171;TCR=156;TR=293;WE=45677647;WS=45677627;set=Platypus	GT:AD:AF:DP	1/1:34,293:0.90:327
chr3	45677638	rs5848762	CA	C	22142.73	.	AC=2;AF=1.00;AN=2;DB;DP=493;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.28;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,489:1.00:489
chr3	45715159	rs35737275	CT	C	1680.73	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr3	45715688	rs2578679	G	A	6503.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr3	45715767	rs2742409	G	A	4744.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.008;ClippingRankSum=0.000;DB;DP=629;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.68;ReadPosRankSum=1.563;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:352,266:0.43:618
chr3	45718327	rs7640969	T	G	1873.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:93,93:0.50:186
chr3	45746836	rs1969626	A	G	857.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:30,38:0.56:68
chr3	45748429	rs2742441	G	A	4665.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.603;ClippingRankSum=0.000;DB;DP=345;ExcessHet=3.0103;FS=3.627;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.85;ReadPosRankSum=-0.645;SOR=0.899;set=HC	GT:AD:AF:DP	0/1:206,131:0.39:337
chr3	45748435	rs2673039	A	G	4584.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.204;ClippingRankSum=0.000;DB;DP=341;ExcessHet=3.0103;FS=4.343;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.77;ReadPosRankSum=-0.257;SOR=0.917;set=HC	GT:AD:AF:DP	0/1:207,126:0.38:333
chr3	45754487	rs2742369	C	A	199.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:8,9:0.53:17
chr3	45754749	rs2248991	G	A	1189.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:82,62:0.43:144
chr3	45761115	rs2064062	G	C	1747.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:185,102:0.36:287
chr3	45763635	rs2673062	A	G	2875.77	.	AC=1;AF=0.500;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	0/1:185,145:0.44:330
chr3	45764246	rs2742448	A	G	719.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:29,27:0.48:56
chr3	45764544	rs2742449	T	C	911.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:55,47:0.46:102
chr3	45772742	rs2531755	T	C	1139.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:80,57:0.42:137
chr3	45772772	rs2673055	G	A	1874.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:129,97:0.43:226
chr3	45773732	rs11709306	G	A	319.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:31,18:0.37:49
chr3	45776875	rs111484566	CT	C	339.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.047;ClippingRankSum=0.000;DB;DP=247;ExcessHet=3.0103;FS=0.656;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=2.272;QD=1.76;ReadPosRankSum=-0.157;SOR=0.607;set=HC	GT:AD:AF:DP	0/1:142,51:0.26:193
chr3	45776900	rs1468543	A	G	1978.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:78,89:0.53:167
chr3	45779136	rs1468542	A	T	757.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:52,39:0.43:91
chr3	45780906	rs3733107	A	G	356.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:11,15:0.58:26
chr3	45784963	rs9821974	T	C	1243.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:31,32:0.51:63
chr3	45784972	rs10575376	GGT	G	1231.73	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:32,32:0.50:64
chr3	45799871	rs2251347	C	T	2890.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr3	45804391	rs2191027	C	T	3180.77	.	AC=1;AF=0.500;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	0/1:239,161:0.40:400
chr3	45817418	rs758386	A	G	17523.77	.	AC=2;AF=1.00;AN=2;DB;DP=676;set=Intersection	GT:AD:AF:DP	1/1:0,665:1.00:665
chr3	45821624	rs2252547	T	C	1224.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:111,67:0.38:178
chr3	45977899	rs1873002	T	C	3070.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr3	46245824	rs371736049	TA	T	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.908;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=1.503;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=1.684;QD=0.73;ReadPosRankSum=0.106;SOR=0.351;set=HC	GT:AD:AF:DP	0/1:34,12:0.26:46
chr3	46400062	rs3092960	G	A	3022.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr3	46414943	.	TACAGTCAGTATCAATTCTGGAAGAATTTCCAG	T	9825.73	.	AC=2;AF=1.00;AN=2;DP=271;set=Intersection	GT:AD:AF:DP	1/1:1,240:1.00:241
chr3	46449864	rs6808835	G	T	6010.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr3	46450072	rs6441977	G	A	9800.77	.	AC=2;AF=1.00;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	1/1:2,365:0.99:367
chr3	46477826	rs56063910	C	T	2770.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.98;SOR=0.933;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr3	46477830	rs75094754	C	T	2746.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.60;SOR=1.010;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr3	46482980	rs17285324	A	T	7298.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:5,273:0.98:278
chr3	46484898	rs7615975	T	G	981.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr3	46487775	rs4682816	C	G	1625.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr3	46487787	rs201856214	TTTGCACCCTTAAAATTA	T	2848.73	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr3	46501284	rs10662431	C	CCTT	2198.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr3	46539523	rs2037391	G	A	1842.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:1,67:0.99:68
chr3	46539864	rs11130092	C	T	298.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr3	46560721	rs35989475	TTAAG	T	130	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr3	46620935	rs143543774	T	C	10978.77	.	AC=2;AF=1.00;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	1/1:4,396:0.99:400
chr3	46654132	rs2139637	G	A	3766.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr3	46658737	rs9832679	A	G	7086.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr3	46658872	rs9870935	G	T	1759.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr3	46751073	rs10578999	TAAG	T	406.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.115;ClippingRankSum=0.000;DB;DP=199;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.36;ReadPosRankSum=0.934;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:150,22:0.13:172
chr3	46933960	rs1001284	C	G	8092.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr3	46943028	rs1531137	T	C	1822.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:1,69:0.99:70
chr3	46944274	rs1138518	T	C	6471.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr3	46963502	rs4587	T	C	1872.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr3	46965197	rs2290546	C	G	2457.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr3	46967040	rs2290545	G	A	1613.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr3	46982365	rs6804732	T	C	1472.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr3	47018214	rs936181	T	C	11570.77	.	AC=2;AF=1.00;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	1/1:0,442:1.00:442
chr3	47021509	rs113932344	CGCGCGCGCGG	C	187.87	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr3	47029661	rs12152493	G	A	2200.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr3	47033937	rs13066214	C	T	2627.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr3	47035625	rs936185	G	A	3762.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr3	47037182	.	T	C	6507.77	.	AC=2;AF=1.00;AN=2;DP=231;set=Intersection	GT:AD:AF:DP	1/1:2,223:0.99:225
chr3	47038135	rs11396344	C	CA	5215.73	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr3	47043538	rs2305634	C	T	5277.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr3	47044122	rs11928558	A	T	8401.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr3	47045739	rs1079276	C	G	15110.77	.	AC=2;AF=1.00;AN=2;DB;DP=568;set=Intersection	GT:AD:AF:DP	1/1:0,564:1.00:564
chr3	47045846	rs2305637	C	T	8329.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:3,298:0.99:301
chr3	47046842	rs2305638	G	C	3441.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr3	47047176	rs5848810	A	AG	3503.73	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr3	47050908	rs3214838	AG	A	3271.73	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr3	47059323	rs2385867	C	T	544.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr3	47061183	rs2290547	G	A	1552.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr3	47079112	rs6768722	G	A	2015.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr3	47103861	rs10589946	GTT	G	1368.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.047;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=0.341;QD=21.39;ReadPosRankSum=0.814;SOR=1.148;set=HC	GT:AD:AF:DP	1/1:14,50:0.78:64
chr3	47125385	rs4082155	G	A	7618.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:2,272:0.99:274
chr3	47125916	rs5848822	CT	C	130.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.371;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=5.379;MLEAC=1;MLEAF=0.500;MQ=59.76;MQRankSum=1.468;QD=6.54;ReadPosRankSum=-0.994;SOR=2.419;set=HC	GT:AD:AF:DP	0/1:7,13:0.65:20
chr3	47142907	rs60548476	TCC	T	6517.73	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr3	47143087	.	AGT	A	288.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.303;ClippingRankSum=0.000;DP=160;ExcessHet=3.0103;FS=2.564;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.37;ReadPosRankSum=1.340;SOR=1.096;set=HC	GT:AD:AF:DP	0/1:48,18:0.27:66
chr3	47147393	rs55987628	CAA	C,CA	1370.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.371;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=11.019;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.27;MQRankSum=0.506;QD=15.06;ReadPosRankSum=0.712;SOR=1.821;set=HC	GT:AD:AF:DP	1/2:6,64,21:0.70,0.23:91
chr3	47161214	rs11923706	T	C	1370.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr3	47162661	rs6767907	A	G	6880.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr3	47187075	rs6442059	C	G	2211.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.33;SOR=1.013;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr3	47198826	rs11708451	G	A	572.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr3	47205502	.	CGCGGCGGCG	C	1240.73	.	AC=2;AF=1.00;AN=2;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr3	47276968	rs2276854	C	T	2306.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:2,88:0.98:90
chr3	47277458	rs1874264	A	G	246.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr3	47277885	rs13094438	G	A	610.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr3	47282303	rs2276853	G	A	1615.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr3	47286227	rs6772449	G	T	785.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr3	47287603	rs35871850	A	AT	2421.73	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr3	47316725	rs903538	G	A	838.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr3	47318747	rs924009	T	G	5675.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr3	47322496	rs807936	C	T	6774.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr3	47376095	rs295450	A	G	3170.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr3	47449058	rs900688	T	C	11526.77	.	AC=2;AF=1.00;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	1/1:0,422:1.00:422
chr3	47452087	rs900689	G	A	14420.77	.	AC=2;AF=1.00;AN=2;DB;DP=541;set=Intersection	GT:AD:AF:DP	1/1:0,534:1.00:534
chr3	47452786	rs1531875	G	A	4590.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.16;SOR=0.753;set=HC	GT:AD:AF:DP	1/1:0,169:1.00:169
chr3	47454399	rs6789730	G	A	3230.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.85;SOR=4.568;set=HC	GT:AD:AF:DP	1/1:0,181:1.00:181
chr3	47456225	rs6442066	T	C	2848.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr3	47459379	.	ACGGG	A	53.70	.	AC=2;AF=1.00;AN=2;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=66.83;QD=26.85;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr3	47459679	rs12487736	C	T	5607.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr3	47462200	rs900690	T	C	790.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr3	47462587	rs900691	A	G	4935.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr3	47464122	rs1038394	A	G	4489.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr3	47539751	rs2170814	T	C	5742.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr3	47539969	rs13059519	C	T	3898.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr3	47543389	rs3816779	G	A	5368.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr3	47555142	rs2291298	C	A	9575.77	.	AC=2;AF=1.00;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	1/1:0,361:1.00:361
chr3	47603926	rs11456803	A	AT	1104.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:1,46:0.98:47
chr3	47604270	rs144390955	TG	T	55.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.972;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.28;ReadPosRankSum=0.793;SOR=1.302;set=HC	GT:AD:AF:DP	0/1:12,5:0.29:17
chr3	47604299	rs4858839	C	T	375.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr3	47614413	rs2280567	G	A	619.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr3	47618953	rs3732530	C	A	7627.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr3	47676902	rs3216712	C	CA	113	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr3	47680066	rs12633923	C	T	1046.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr3	47680119	rs12636863	T	C	3160.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr3	47712202	rs1141601	T	C	6069.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr3	47722034	.	C	CTTT	80.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.112;ClippingRankSum=-0.000;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.09;ReadPosRankSum=-0.414;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:3,5:0.62:8
chr3	47762030	rs12495204	A	G	1741.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr3	47770380	rs6442081	G	A	1180.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr3	47807225	.	A	AT	87.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.469;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=0.000;QD=1.99;ReadPosRankSum=-0.682;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:30,14:0.32:44
chr3	47960426	.	G	GT	77.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.460;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=12.270;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.11;ReadPosRankSum=0.000;SOR=0.035;set=HC	GT:AD:AF:DP	0/1:17,8:0.32:25
chr3	48019232	rs6770467	A	G	1415.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr3	48019258	rs6770477	A	G	1835.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr3	48209486	rs3731539	C	T	2487.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr3	48219320	rs3731514	AAC	A	13500.73	.	AC=2;AF=1.00;AN=2;DB;DP=444;set=Intersection	GT:AD:AF:DP	1/1:3,405:0.99:408
chr3	48225509	rs3731503	T	C	759.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:2,29:0.94:31
chr3	48414197	rs9852211	A	T	2947.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr3	48414215	rs9815103	G	A	3590.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr3	48419723	rs7630741	G	T	559.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr3	48422235	rs6784322	T	A	3176.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr3	48422512	.	GTT	G,GT	407.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.940;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=3.112;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.06;MQRankSum=0.087;QD=14.56;ReadPosRankSum=-0.402;SOR=2.093;set=HC	GT:AD:AF:DP	1/2:3,15,10:0.54,0.36:28
chr3	48450706	rs3217706	TC	T	1145.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr3	48451300	rs3214871	AG	A	4672.73	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr3	48454468	rs3214041	C	T	8425.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:2,297:0.99:299
chr3	48455626	rs6794875	A	G	1493.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr3	48461313	rs2362450	C	G	2130.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr3	48462461	rs11130171	A	G	1584.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr3	48463618	rs9883759	T	A	4756.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr3	48463711	rs9883927	T	C	4724.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr3	48463856	rs142527941	G	A	2071.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr3	48474249	rs2279077	A	G	5086.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr3	48476431	rs13062723	C	G	6445.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr3	48481647	rs3774808	G	A	1368.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr3	48505302	rs6442124	A	G	1599.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:1,58:0.98:59
chr3	48505964	rs2242150	C	A	3758.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr3	48508585	rs11797	C	T	12903.77	.	AC=2;AF=1.00;AN=2;DB;DP=484;set=Intersection	GT:AD:AF:DP	1/1:0,481:1.00:481
chr3	48518513	.	G	GA	179.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.039;ClippingRankSum=0.000;DP=138;ExcessHet=3.0103;FS=7.452;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=2.183;QD=1.58;ReadPosRankSum=-1.215;SOR=1.067;set=HC	GT:AD:AF:DP	0/1:86,28:0.25:114
chr3	48538812	rs150025480	CCA	C	32.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.356;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=4.267;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.44;ReadPosRankSum=0.488;SOR=0.166;set=HC	GT:AD:AF:DP	0/1:66,8:0.11:74
chr3	48576483	rs7615170	C	G	704.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr3	48593341	.	T	TA	47.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.238;ClippingRankSum=0.000;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.65;ReadPosRankSum=-1.526;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:20,9:0.31:29
chr3	48602523	rs138595277	G	GGGC	9604.73	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr3	48606065	rs2532848	G	T	2215.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr3	48625266	rs1264194	T	C	5821.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr3	48680470	rs112843572	C	T	5777.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:1,217:1.00:218
chr3	48681765	.	CAGAG	C	212.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.525;ClippingRankSum=0.000;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.87;ReadPosRankSum=0.061;SOR=0.532;set=HC	GT:AD:AF:DP	0/1:45,10:0.18:55
chr3	48709758	.	GA	G	80.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.562;ClippingRankSum=0.000;DP=109;ExcessHet=3.0103;FS=3.622;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.797;QD=0.76;ReadPosRankSum=-0.227;SOR=0.356;set=HC	GT:AD:AF:DP	0/1:84,22:0.21:106
chr3	48719638	rs7633840	T	C	1959.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr3	48723302	rs6792510	G	C	1149.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr3	48727112	rs4858798	G	A	3741.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr3	48845251	rs9311430	C	T	3236.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr3	48897078	rs6414612	A	G	3206.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr3	48956257	rs150858838	A	G	3104.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr3	48982732	rs9864243	G	A	315.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr3	48986399	rs13315711	A	T	6254.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr3	48986546	rs371516194	CATTTATTT	C	1373.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr3	49002581	.	A	G	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.038;ClippingRankSum=0.000;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.67;MQRankSum=-4.374;QD=2.08;ReadPosRankSum=0.060;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:18,3:0.14:21
chr3	49004723	rs6446196	A	G	2763.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr3	49044767	rs6781790	C	T	1474.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr3	49048827	.	CT	C	63.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.047;ClippingRankSum=0.000;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.54;ReadPosRankSum=0.495;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:10,8:0.44:18
chr3	49053219	rs7100	A	G	5526.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr3	49054692	rs3087866	T	C	2537.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr3	49070499	rs4974081	C	T	990.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr3	49095590	.	A	AT	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.296;ClippingRankSum=-0.000;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.13;ReadPosRankSum=0.339;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:7,6:0.46:13
chr3	49114544	rs7626445	C	T	162.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr3	49133310	rs9840050	A	G	1187.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr3	49135771	.	G	T	1426.77	.	AC=1;AF=0.500;AN=2;DP=237;set=Intersection	GT:AD:AF:DP	0/1:156,76:0.33:232
chr3	49135961	rs13064784	C	G	10456.77	.	AC=2;AF=1.00;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	1/1:0,395:1.00:395
chr3	49137904	rs4521268	G	T	9365.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:0,341:1.00:341
chr3	49139086	.	T	C	236.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.708;ClippingRankSum=0.000;DP=77;ExcessHet=3.0103;FS=1.059;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.12;ReadPosRankSum=0.468;SOR=0.526;set=HC	GT:AD:AF:DP	0/1:59,17:0.22:76
chr3	49139966	rs4513485	G	A	4389.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr3	49145741	rs3212	T	C	1773.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr3	49146656	rs113592495	T	G	2307.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:6,92:0.94:98
chr3	49148890	rs4292260	T	C	21880.77	.	AC=2;AF=1.00;AN=2;DB;DP=812;set=Intersection	GT:AD:AF:DP	1/1:3,807:1.00:810
chr3	49166069	rs9865051	C	T	6568.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr3	49168755	.	C	A	279.77	.	AC=1;AF=0.500;AN=2;DP=60;set=Intersection	GT:AD:AF:DP	0/1:41,18:0.31:59
chr3	49200627	rs4955418	A	G	21300.77	.	AC=2;AF=1.00;AN=2;DB;DP=825;set=Intersection	GT:AD:AF:DP	1/1:2,814:1.00:816
chr3	49200692	rs4955419	T	A	24078.77	.	AC=2;AF=1.00;AN=2;DB;DP=908;set=Intersection	GT:AD:AF:DP	1/1:1,901:1.00:902
chr3	49210732	rs7617480	A	C	364.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr3	49211989	rs10865954	T	C	757.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr3	49249381	rs9867285	A	G	450.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr3	49269758	rs2099526	G	T	1978.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr3	49273996	rs12631989	C	T	3548.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:1,122:0.99:123
chr3	49292991	rs11344456	CT	C	193.75	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.540;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=2.533;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=0.639;QD=7.45;ReadPosRankSum=-1.066;SOR=2.115;set=HC	GT:AD:AF:DP	0/1:6,20:0.77:26
chr3	49298139	rs7626076	G	A	4756.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr3	49298205	rs4955417	T	C	6712.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr3	49329814	.	T	G	1647.77	.	AC=2;AF=1.00;AN=2;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr3	49354975	rs71077785	GT	G	287.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.203;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=2.366;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.99;ReadPosRankSum=1.424;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:7,25:0.78:32
chr3	49365269	rs6795772	C	T	2858.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr3	49395673	rs17838762	GGCCGCC	G	727.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr3	49398514	rs892974	C	A	53.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr3	49406080	rs2878298	T	C	5385.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.787;ClippingRankSum=0.000;DB;DP=205;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.66;ReadPosRankSum=1.968;SOR=1.090;set=HC	GT:AD:AF:DP	1/1:2,200:0.99:202
chr3	49459114	rs4855873	A	C	961.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr3	49459376	rs1464566	T	C	3008.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr3	49463926	rs6762593	A	G	3672.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.61;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,138:1.00:138
chr3	49548008	rs2131107	C	G	2619.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr3	49548294	rs2329024	T	C	3234.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr3	49568095	rs2311801	G	A	153.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.64;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr3	49570882	rs1050088	T	C	4212.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr3	49690199	rs4855885	G	A	6299.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:1,224:1.00:225
chr3	49701298	rs2005557	G	A	4158.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr3	49713753	rs6778597	T	C	3695.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr3	49720393	rs2960548	C	G	11570.77	.	AC=2;AF=1.00;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	1/1:0,411:1.00:411
chr3	49722905	.	T	TGGG	199.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.417;ClippingRankSum=0.000;DP=306;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.72;MQRankSum=-9.615;QD=0.68;ReadPosRankSum=2.899;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:267,28:0.09:295
chr3	49723321	.	AGCGCTG	A	73.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.376;ClippingRankSum=0.000;DP=84;ExcessHet=3.0103;FS=3.337;MLEAC=1;MLEAF=0.500;MQ=57.26;MQRankSum=-5.657;QD=0.89;ReadPosRankSum=-0.530;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:75,8:0.10:83
chr3	49723726	rs3038471	GC	G	176.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.952;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.16;MQRankSum=1.699;QD=7.36;ReadPosRankSum=2.102;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:13,11:0.46:24
chr3	49723784	rs9713651	C	A	1678.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:6,70:0.92:76
chr3	49724014	rs62262684	G	A	181.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:12,10:0.45:22
chr3	49724048	rs10711993	TC	T	90.73	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:8,5:0.38:13
chr3	49724808	rs3020779	T	C	6945.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr3	49725432	rs11309936	AG	A	299.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;MQ=54.07;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr3	49725948	rs141881740	C	T	161.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:11,9:0.45:20
chr3	49726028	rs62262685	T	C	480.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.893;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=3.340;MLEAC=1;MLEAF=0.500;MQ=53.95;MQRankSum=-6.808;QD=7.40;ReadPosRankSum=2.695;SOR=0.395;set=HC	GT:AD:AF:DP	0/1:37,28:0.43:65
chr3	49726070	rs62262686	G	A	384.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:49,24:0.33:73
chr3	49736172	rs11130216	C	A	3564.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr3	49738945	rs6804655	C	T	5049.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr3	49739507	rs1491985	G	C	5048.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr3	49751585	rs2291542	C	T	4056.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr3	49753788	rs11720705	A	G	6045.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr3	49758764	rs4768	A	G	16770.77	.	AC=2;AF=1.00;AN=2;DB;DP=603;set=Intersection	GT:AD:AF:DP	1/1:2,592:1.00:594
chr3	49760039	rs1466685	T	C	8385.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr3	49765483	rs2307021	C	G	875.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr3	49829326	rs62260715	G	A	2986.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr3	49832261	rs6802890	A	G	2568.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr3	49836707	rs7629936	G	A	3916.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr3	49842625	rs2234391	A	G	1220.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr3	49842881	rs11400401	T	TG	3768.73	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr3	49843723	rs3819325	T	C	665.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.61;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr3	49846041	rs2234385	G	A	1217.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr3	49847623	rs1799845	A	G	6008.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr3	49849723	rs1799843	G	A	5824.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr3	49869243	rs116222707	C	T	315.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr3	49881134	rs2246832	A	T	3020.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr3	49884913	rs13316065	C	T	2910.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr3	49894030	rs2276864	T	C	780.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr3	49897830	rs2681780	C	T	1618.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr3	49898000	rs2777888	A	G	5101.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr3	49898273	rs2681781	A	G	7355.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr3	49899795	rs3796386	G	A	9456.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:0,352:1.00:352
chr3	49924940	rs1062633	T	C	7190.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr3	49928691	rs7433231	T	C	6119.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr3	49936102	rs2230590	T	C	5082.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr3	49949071	rs868891	A	G	8655.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chr3	49978069	rs6772095	C	T	7621.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr3	50098993	.	CTTTT	C,CTTT	821.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.261;ClippingRankSum=0.000;DP=161;ExcessHet=3.0103;FS=1.846;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=13.93;ReadPosRankSum=0.030;SOR=1.508;set=HC	GT:AD:AF:DP	1/2:6,30,23:0.51,0.39:59
chr3	50112589	.	C	CA	53.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.849;ClippingRankSum=0.000;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.85;ReadPosRankSum=0.704;SOR=0.526;set=HC	GT:AD:AF:DP	0/1:48,15:0.24:63
chr3	50129374	rs5848907	T	TA	849.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr3	50155887	rs112672304	TGA	T	825.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.709;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=0.807;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.26;ReadPosRankSum=1.025;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:91,41:0.31:132
chr3	50192760	rs2526390	C	T	80.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr3	50212512	rs2624833	G	T	9856.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	1/1:2,381:0.99:383
chr3	50251833	rs5848902	A	AG	5798.73	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr3	50255663	rs35926495	C	T	13434.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.355;ClippingRankSum=0.000;DB;DP=301;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=45.08;ReadPosRankSum=0.785;SOR=1.302;set=HC	GT:AD:AF:DP	1/1:1,297:1.00:298
chr3	50255666	rs56048629	C	T	13458.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.369;ClippingRankSum=0.000;DB;DP=313;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=43.42;ReadPosRankSum=0.581;SOR=1.377;set=HC	GT:AD:AF:DP	1/1:1,309:1.00:310
chr3	50296330	rs71728346	G	GA	179.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.873;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=10.188;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.539;QD=2.77;ReadPosRankSum=1.902;SOR=1.102;set=HC	GT:AD:AF:DP	0/1:46,19:0.29:65
chr3	50306752	rs67324803	G	GC	2427.73	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr3	50308718	rs4688739	A	G	2880.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr3	50329826	rs1076872	A	G	9208.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:0,346:1.00:346
chr3	50332697	rs13100173	G	A	4183.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr3	50357869	rs709210	A	C	2953.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr3	50597092	rs1034405	G	A	8013.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chr3	50609123	rs636168	T	C	4197.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr3	50609624	rs2232248	T	G	4090.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr3	50645635	rs621975	T	G	4657.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr3	50645793	rs622502	C	G	6410.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr3	50678001	rs608961	C	T	1133.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr3	50683809	rs876105	T	C	2386.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr3	50684489	rs4468971	A	G	3904.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr3	50685574	rs35676349	CA	C	531.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr3	51246360	rs4301044	A	G	2699.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr3	51266880	rs113104131	TA	T	177.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.086;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=1.992;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.310;QD=1.85;ReadPosRankSum=-0.452;SOR=0.480;set=HC	GT:AD:AF:DP	0/1:68,28:0.29:96
chr3	51273711	rs1480362	A	G	3166.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr3	51273773	rs1480361	T	C	5747.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr3	51274902	rs11386090	T	TA	5085.73	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr3	51393706	rs35251332	C	CAG	3086.73	.	AC=2;AF=1.00;AN=2;DB;DP=73;MQ=60.15;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr3	51395571	rs1542574	C	T	998.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr3	51418348	rs2241784	G	A	1603.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr3	51422766	rs13091931	G	T	696.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.49;QD=24.88;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr3	51430330	rs79092917	G	A	12443.77	.	AC=2;AF=1.00;AN=2;DB;DP=465;set=Intersection	GT:AD:AF:DP	1/1:3,456:0.99:459
chr3	51469107	rs4611808	C	T	1534.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr3	51517625	.	T	TTG	451.73	.	AC=1;AF=0.500;AN=2;DP=31;set=Intersection	GT:AD:AF:DP	0/1:7,21:0.75:28
chr3	51697493	rs904145	A	G	4600.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr3	51812952	rs11130296	C	T	9055.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,328:1.00:328
chr3	51895850	rs986539	C	T	1276.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr3	51907736	rs7635409	A	G	3653.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr3	51908226	rs1505403	T	C	3086.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr3	51908430	rs6794320	T	C	8139.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr3	51911103	rs201734789	TTTTTC	T	63.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.62;ReadPosRankSum=0.524;SOR=2.093;set=HC	GT:AD:AF:DP	0/1:3,3:0.50:6
chr3	51911118	rs3036712	C	T	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.189;ClippingRankSum=-0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.97;ReadPosRankSum=-1.368;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr3	51929360	rs34574240	GA	G	1104.73	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr3	51936949	rs7635125	T	C	10197.77	.	AC=2;AF=1.00;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	1/1:0,386:1.00:386
chr3	51975569	.	GC	G	42.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.505;ClippingRankSum=0.000;DP=83;ExcessHet=3.0103;FS=6.064;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.62;ReadPosRankSum=1.186;SOR=0.160;set=HC	GT:AD:AF:DP	0/1:59,10:0.14:69
chr3	51978220	rs28547534	A	G	10030.77	.	AC=2;AF=1.00;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	1/1:0,372:1.00:372
chr3	51990119	rs28587738	A	C	1265.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr3	51990315	rs28651222	A	G	5393.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr3	51990646	rs73082754	C	A	10107.77	.	AC=2;AF=1.00;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	1/1:1,391:1.00:392
chr3	52012320	rs41292350	G	A	5003.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr3	52240585	rs201007607	T	C	5316.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:2,198:0.99:200
chr3	52272945	rs11441245	C	CG	505.73	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:10,24:0.71:34
chr3	52415865	rs770284	A	G	1323.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr3	52430698	rs365048	A	G	7813.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr3	52438566	.	G	A	5345.77	.	AC=2;AF=1.00;AN=2;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr3	52453893	rs498778	C	T	1337.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr3	52471942	rs82825	G	A	1382.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr3	52477080	rs2016575	T	C	4043.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr3	52478741	.	ACGG	A	2078.73	.	AC=2;AF=1.00;AN=2;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=63.99;QD=39.22;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr3	52478746	.	ACACGCAAACTCGGCACACGCACACAAACTCGGCACACGCACACAAACACTGCACATGCACACAAACACG	A	2031.73	.	AC=2;AF=1.00;AN=2;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=63.10;MQRankSum=1.071;QD=35.64;SOR=0.884;set=HC	GT:AD:AF:DP	1/1:2,55:0.96:57
chr3	52478783	.	CGCACACAAACACTGCACAT	C	2972	.	AC=2;AF=1.00;AN=2;BRF=0.4;FR=1.0000;HP=1;HapScore=1;MGOF=19;MMLQ=22;MQ=61.31;NF=13;NR=22;PP=2972;QD=20;SC=ACTCGGCACACGCACACAAAC;SbPval=0.8;Source=Platypus;TC=42;TCF=19;TCR=23;TR=35;WE=52478823;WS=52478773;set=Platypus	GT:AD:AF:DP	1/1:7,35:0.83:42
chr3	52478815	.	G	A	1314	.	AC=2;AF=1.00;AN=2;BRF=0.4;FR=1.0000;HP=1;HapScore=1;MGOF=19;MMLQ=23;MQ=61.71;NF=35;NR=25;PP=1314;QD=22.4795202091;SC=ACACAAACACGGCACACGCAC;SbPval=0.6;Source=Platypus;TC=61;TCF=35;TCR=26;TR=60;WE=52478823;WS=52478773;set=Platypus	GT:AD:AF:DP	1/1:1,60:0.98:61
chr3	52478914	rs114942616	C	T	3690.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr3	52488202	rs1035002	C	T	1193.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr3	52489564	rs968588	A	T	1264.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.91;SOR=4.362;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr3	52492085	rs4687614	G	A	577.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr3	52492112	.	G	A	332.77	.	AC=2;AF=1.00;AN=2;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr3	52492707	rs1541495	T	C	2860.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr3	52505758	rs3065763	G	GAT	3247.73	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr3	52506282	rs4312651	A	G	1630.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr3	52506426	rs6784615	C	T	2039.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr3	52506491	rs6445486	A	G	1187.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr3	52510592	rs9856575	G	A	6641.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr3	52512318	rs2109559	A	G	3470.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr3	52513940	rs4687618	T	C	915.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr3	52518786	rs4687619	T	C	1997.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr3	52521522	rs148434820	G	A	2880.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr3	52523405	rs887515	C	T	2993.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr3	52524974	rs4687621	A	C	664.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr3	52536308	rs758801	A	C	1341.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr3	52537969	rs4687545	T	C	4785.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.66;SOR=0.992;set=HC	GT:AD:AF:DP	1/1:0,173:1.00:173
chr3	52540773	rs1010553	T	C	9041.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:0,336:1.00:336
chr3	52544470	rs9835659	A	G	4789.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr3	52546487	rs7644763	C	T	4682.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:4,182:0.98:186
chr3	52548818	rs740903	C	T	4339.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr3	52554304	rs7630214	G	C	12437.77	.	AC=2;AF=1.00;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	1/1:2,452:1.00:454
chr3	52559167	rs58050076	CGG	C	1504.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.329;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=33.44;ReadPosRankSum=1.067;SOR=5.943;set=HC	GT:AD:AF:DP	1/1:1,44:0.98:45
chr3	52676065	.	C	CA	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.549;ClippingRankSum=0.000;DP=190;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.25;ReadPosRankSum=1.473;SOR=0.649;set=HC	GT:AD:AF:DP	0/1:127,26:0.17:153
chr3	52692428	rs200866604	C	CT	56.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.990;ClippingRankSum=-0.000;DB;DP=26;ExcessHet=3.0103;FS=3.310;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.15;ReadPosRankSum=0.681;SOR=0.141;set=HC	GT:AD:AF:DP	0/1:11,7:0.39:18
chr3	52725718	.	A	AT	480.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.481;ClippingRankSum=0.000;DP=115;ExcessHet=3.0103;FS=1.726;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=0.710;QD=8.15;ReadPosRankSum=1.896;SOR=1.296;set=HC	GT:AD:AF:DP	0/1:20,39:0.66:59
chr3	52727189	.	G	GT	70.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.747;ClippingRankSum=0.000;DP=220;ExcessHet=3.0103;FS=2.664;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.36;ReadPosRankSum=-0.868;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:165,32:0.16:197
chr3	52853340	rs7620907	G	C	1002.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr3	52867288	rs4687661	A	T	6366.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr3	52867595	rs60332615	C	A	3669.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr3	52867715	rs6787916	G	C	7096.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr3	52867811	rs6776876	A	T	6281.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr3	52868610	rs11922961	T	C	1382.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr3	52868668	rs142854055	G	GCACA,GCACACA	2155.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=94;set=Intersection	GT:AF:DP	1/2:0.28,0.70:80
chr3	52868670	rs62255421	G	A	4133.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.89;QD=42.62;SOR=1.044;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr3	52868716	rs77032405	GC	G	7565.73	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:1,258:1.00:259
chr3	52870729	rs11431693	C	CA	5489.73	.	AC=2;AF=1.00;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.07;QD=37.09;SOR=1.141;set=HC	GT:AD:AF:DP	1/1:0,148:1.00:148
chr3	52874446	rs6769789	C	T	1120.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr3	52874753	rs56019197	T	C	507.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr3	52874779	rs7638431	G	A	537.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr3	52877647	rs55829187	C	CA	3230.73	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=69.61;QD=44.87;SOR=1.226;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr3	52877649	rs56008508	G	A	3239.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=69.62;QD=44.38;SOR=1.257;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr3	52877649	.	GG	AG	1698	.	AC=1;AF=0.500;AN=2;BRF=0.38;FR=1.0000,1.0000;HP=1;HapScore=1;MGOF=11;MMLQ=26;MQ=68.5;NF=35,20;NR=20,20;PP=1077,1698;QD=20.2140220463;SC=GAGGGCTACAGGTGAGCTTTC;SbPval=0.56;Source=Platypus;TC=57;TCF=36;TCR=21;TR=55,40;WE=52877657;WS=52877639;set=Platypus	GT:AD:AF:DP	0/1:2,55:0.96:57
chr3	52877649	.	GG	GAG	1698	.	AC=1;AF=0.500;AN=2;BRF=0.38;FR=1.0000,1.0000;HP=1;HapScore=1;MGOF=11;MMLQ=26;MQ=68.5;NF=35,20;NR=20,20;PP=1077,1698;QD=20.2140220463;SC=GAGGGCTACAGGTGAGCTTTC;SbPval=0.56;Source=Platypus;TC=57;TCF=36;TCR=21;TR=55,40;WE=52877657;WS=52877639;set=Platypus	GT:AD:AF:DP	0/1:0,40:1.00:40
chr3	52877720	rs4687668	T	C	3374.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr3	52878721	rs7650966	G	C	750.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr3	52878746	rs10663469	C	CAG	2106.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr3	52878825	rs7629528	C	A	4290.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr3	52881634	rs5848962	T	TG	3419.73	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr3	52883654	rs3216716	CT	C	1411.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr3	52886914	rs4687675	A	T	1744.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr3	52960013	rs11360013	GC	G	2847.73	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr3	52960256	rs34584015	AG	A	3787.73	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr3	52960261	rs34585187	C	A	3796.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr3	52968726	rs2257216	T	C	1549.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr3	52968801	rs2710315	T	C	2761.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr3	53003021	rs2245424	G	C	1652.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr3	53125922	rs11242	T	C	2013.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr3	53126143	rs2581786	G	A	3215.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr3	53133526	rs2581829	A	G	2596.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr3	53139506	rs2564942	CA	TG	1091.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr3	53154132	rs373476566	ATTAACTGCAC	AGCAC,A	53.70	.	AC=2,0;AF=1.00,0.00;ALERT;AN=2;DB;DP=2;set=Intersection	GT:AF:DP	1/1:1.00:2
chr3	53154139	rs199819350	GCACT	G	53.70	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.85;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr3	53154143	.	T	G	26	.	AC=2;AF=1.00;AN=2;BRF=0.0;FR=0.9999;HP=2;HapScore=2;MGOF=11;MMLQ=28;MQ=60.0;NF=0;NR=2;PP=26;QD=30.3856062736;SC=TTAACTGCACTTTCTATTCAG;SbPval=1.0;Source=Platypus;TC=3;TCF=0;TCR=3;TR=2;WE=53154151;WS=53154122;set=Platypus	GT:AD:AF:DP	1/1:1,2:0.67:3
chr3	53164526	rs78365485	G	C	3830.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr3	53216024	rs41305600	C	T	1091.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:1,36:0.97:37
chr3	53216051	rs6445568	T	C	774.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr3	53220129	rs45513792	G	T	5462.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr3	53220215	rs2230494	G	A	9099.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:0,340:1.00:340
chr3	53220375	rs41275531	G	A	3820.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:4,144:0.97:148
chr3	53220444	rs6793352	T	C	2495.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:1,75:0.99:76
chr3	53220569	rs45596236	G	A	7575.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr3	53220763	rs3830265	GCTCAGAGC	G	6880.73	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:2,157:0.99:159
chr3	53221510	rs41315886	C	T	553.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr3	53222761	rs2306574	C	T	6947.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr3	53223286	rs67531107	GCTGGT	G	3611.73	.	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.62;QD=40.13;SOR=0.738;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr3	53223927	rs1075865	C	G	4728.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr3	53224002	rs900495	T	C	4658.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr3	53259850	rs3163	C	T	7928.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr3	53260903	rs2279323	G	C	3726.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr3	53261019	rs41275535	C	G	480.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr3	53262400	rs3736153	G	C	3907.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr3	53262472	rs3736154	G	A	1429.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr3	53263279	rs3736156	A	G	7560.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr3	53264485	rs1131728	A	G	3283.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr3	53267100	rs2242300	C	A	1924.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:2,71:0.97:73
chr3	53267133	rs6445573	G	C	3299.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr3	53267296	rs2242302	G	A	4375.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:4,165:0.98:169
chr3	53267342	rs2242303	G	A	3260.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr3	53269046	rs1051485	T	C	5269.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:2,197:0.99:199
chr3	53269163	rs1051483	G	A	6080.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr3	53269275	rs2242304	T	C	1980.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr3	53276052	rs9827244	G	A	948.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr3	53277476	rs7356056	C	T	1162.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr3	53277653	rs9858133	G	T	2551.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr3	53277675	rs12635973	C	A	2043.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr3	53321631	rs9628	A	C	5861.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:3,215:0.99:218
chr3	53324819	rs201612547	ATGGCAC	A	1628.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr3	53324915	rs3732834	A	G	2352.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr3	53346525	.	C	CT,CTT	421.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.062;ClippingRankSum=0.000;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=10.54;ReadPosRankSum=1.063;SOR=0.986;set=HC	GT:AD:AF:DP	1/2:12,15,13:0.38,0.33:40
chr3	53700550	rs2250736	T	C	4294.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:2,166:0.99:168
chr3	53707589	rs10707009	GA	G	258.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.548;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.57;MQRankSum=0.786;QD=7.61;ReadPosRankSum=-0.154;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:11,23:0.68:34
chr3	53744327	rs3774546	C	G	1849.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr3	53766026	rs2612033	T	C	3695.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr3	53766212	rs2306866	A	T	342.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr3	53769479	rs1045958	C	T	11376.77	.	AC=2;AF=1.00;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	1/1:3,438:0.99:441
chr3	53776995	rs2612026	T	C	2800.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:1,99:0.99:100
chr3	53778620	rs28365115	C	G	968.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr3	53779825	rs3821860	A	G	5383.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:1,190:0.99:191
chr3	53796744	rs3774567	T	C	1629.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr3	53806803	rs2278517	G	C	3158.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr3	53814197	rs1829423	G	A	2093.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr3	53856653	rs2241808	C	T	6034.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr3	53857803	rs12676	A	C	4102.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr3	53880789	rs2232332	A	G	4917.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr3	53882663	rs1025690	G	A	5989.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:1,227:1.00:228
chr3	53882673	rs5849009	G	GT	5899.73	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr3	53883722	rs1025689	C	G	1943.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr3	53883910	rs4687751	C	T	1025.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr3	53910919	rs11419180	G	GT	900.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.24;QD=22.52;SOR=2.670;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr3	54354510	rs9879885	T	C	4882.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr3	54420721	rs3028846	GT	G	205.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.591;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=3.390;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.277;QD=2.98;ReadPosRankSum=0.780;SOR=0.487;set=HC	GT:AD:AF:DP	0/1:42,27:0.39:69
chr3	54676441	rs3832224	CA	C	780.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr3	54786864	rs34310780	G	GT	177.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.012;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=2.602;MLEAC=1;MLEAF=0.500;MQ=60.40;MQRankSum=0.764;QD=8.89;ReadPosRankSum=0.665;SOR=2.049;set=HC	GT:AD:AF:DP	0/1:6,14:0.70:20
chr3	54798258	rs3732748	G	A	6517.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:2,243:0.99:245
chr3	54913354	rs35536476	CT	C	917.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.708;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=0.522;QD=12.08;ReadPosRankSum=-0.390;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:11,65:0.86:76
chr3	54919272	rs1405330	A	G	4661.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr3	54928496	rs1526595	T	C	2958.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr3	54953022	rs3832225	CTT	C	146.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.47;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr3	54961949	rs4245920	C	T	4754.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr3	54962013	rs56327704	A	C	2316.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr3	55003733	rs881820	G	T	2947.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr3	55003992	rs113492437	T	TA	98.19	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:1,7:0.88:8
chr3	55018520	rs2360664	T	C	536.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr3	55018619	rs56055307	T	TG	2474.73	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.17;QD=38.67;SOR=1.127;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr3	55021556	rs2280186	G	C	4516.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr3	55038898	rs4955827	A	G	5549.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr3	55041723	rs2280187	G	T	1976.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr3	55108055	rs358076	G	A	1642.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr3	55514766	rs73075443	A	T	3090.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr3	55989276	.	TTGTGTGTGTGTGTGTG	T,TTG	3600.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.126;ClippingRankSum=0.000;DP=149;ExcessHet=3.0103;FS=4.415;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.15;MQRankSum=0.268;QD=40.01;ReadPosRankSum=2.123;SOR=2.833;set=HC	GT:AD:AF:DP	1/2:2,19,69:0.21,0.77:90
chr3	56019805	rs6806267	T	C	484.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr3	56019905	rs6445762	C	A	2326.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr3	56020159	rs7613818	G	A	599.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr3	56037025	rs5849124	C	CAT	7787.73	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr3	56037241	rs35658351	CA	C	4196.73	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr3	56037249	rs34984094	A	AG	4118.73	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr3	56041371	rs146206948	T	C	2984.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:3,120:0.98:123
chr3	56052839	rs3816575	G	T	3301.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr3	56591178	rs73079891	A	G	1927.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr3	56591278	rs150150392	T	TGGGGTAAGCA	5344.73	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr3	56593543	rs12486047	C	A	492.94	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:2,19:0.90:21
chr3	56593680	rs11130525	T	C	1661.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr3	56597688	rs6781293	A	G	720.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr3	56597954	rs6769055	C	T	5369.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr3	56599159	rs73081810	T	C	2790.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr3	56599208	rs55831745	G	C	1883.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr3	56599258	rs10687224	G	GTATT	1447.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr3	56601175	rs112310084	T	C	787.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr3	56605404	rs139586078	TA	T	169.74	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr3	56627048	rs1388256	A	G	841.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr3	56627598	rs1491170	A	G	4901.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr3	56628031	rs7637449	G	A	11436.77	.	AC=2;AF=1.00;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	1/1:2,426:1.00:428
chr3	56674190	rs1489949	A	C	1060.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr3	56787451	rs3821412	C	T	4247.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr3	56808954	.	C	CA	56.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.222;ClippingRankSum=0.000;DP=86;ExcessHet=3.0103;FS=1.259;MLEAC=1;MLEAF=0.500;MQ=60.50;MQRankSum=3.856;QD=0.68;ReadPosRankSum=-0.912;SOR=0.380;set=HC	GT:AD:AF:DP	0/1:67,16:0.19:83
chr3	57011234	rs13080107	T	C	5642.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr3	57130643	rs56914717	TA	T	1452.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr3	57132200	rs2291462	A	G	5891.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:1,214:1.00:215
chr3	57136585	rs17057718	C	T	1751.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr3	57137090	rs2247656	A	G	5784.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr3	57137232	rs3215002	GA	G	4315.73	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:2,187:0.99:189
chr3	57139833	rs1545982	G	A	756.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr3	57139972	rs1545981	A	G	2794.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr3	57140108	rs2035654	G	A	6730.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr3	57176505	rs1386829	A	G	4282.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr3	57203398	rs4299455	C	A	1232.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:2,43:0.96:45
chr3	57269608	rs11544592	A	G	2229.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr3	57313072	.	C	CA	192.50	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.764;ClippingRankSum=0.000;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=12.83;ReadPosRankSum=1.475;SOR=1.739;set=HC	GT:AD:AF:DP	1/1:2,13:0.87:15
chr3	57314594	rs62251997	A	G	430.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr3	57327763	.	G	GT	293.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.809;ClippingRankSum=0.000;DP=116;ExcessHet=3.0103;FS=1.856;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.651;QD=2.58;ReadPosRankSum=2.705;SOR=0.456;set=HC	GT:AD:AF:DP	0/1:85,29:0.25:114
chr3	57335705	.	TACACACAC	T,TAC	1949.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=40.62;SOR=1.863;set=HC	GT:AD:AF:DP	1/2:0,15,33:0.31,0.69:48
chr3	57414097	rs17793014	T	A	1169.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr3	57414330	rs11915740	C	A	1305.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr3	57419497	rs6773904	C	T	5652.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr3	57422824	rs4234394	A	G	1008.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.172;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=21.46;ReadPosRankSum=2.262;SOR=1.038;set=HC	GT:AD:AF:DP	1/1:2,45:0.96:47
chr3	57430376	rs114733695	C	T	746.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr3	57430988	rs6768943	G	A	3675.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr3	57431740	rs139063171	ATAAATAAATAAT	A	5112.73	.	AC=2;AF=1.00;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=63.67;QD=40.90;SOR=1.746;set=HC	GT:AD:AF:DP	1/1:0,125:1.00:125
chr3	57431985	rs2121743	G	A	8583.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,328:1.00:328
chr3	57432064	rs2121742	C	T	2884.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr3	57443817	rs6768661	T	C	2273.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr3	57456093	rs35152693	C	CA	213.90	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:5,14:0.74:19
chr3	57456371	rs9871422	T	C	1267.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr3	57457123	rs6445886	C	T	2164.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr3	57469053	rs9826084	A	C	1528.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr3	57469097	rs9863860	C	T	2163.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr3	57469272	rs9864150	C	T	1155.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr3	57475351	rs6806444	T	G	2693.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr3	57488279	rs10662782	T	TTTC	2717.73	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr3	57509103	rs6768974	T	C	309.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.81;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr3	57542173	rs2241988	C	T	4580.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr3	57582718	rs57877028	GAAA	G	8941.73	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr3	57627500	rs9873675	T	C	2054.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr3	57627580	rs9816093	A	C	353.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr3	57882601	rs17058639	C	T	3365.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr3	57912865	rs75226124	C	CA	934.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr3	58080505	rs7644723	G	T	1932.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr3	58081888	rs1522384	T	C	4589.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr3	58083446	rs939882	G	A	1120.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr3	58089516	rs6445945	A	G	398.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr3	58089585	rs6445946	T	A	1202.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr3	58089877	rs1522386	A	G	1470.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr3	58094157	rs2259091	A	G	2695.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr3	58094852	rs7634236	C	T	4599.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr3	58095466	rs2708318	G	T	1397.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr3	58095500	rs2686635	G	T	776.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr3	58109162	rs1131356	G	A	6603.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr3	58111285	rs3732633	T	G	4704.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:2,173:0.99:175
chr3	58112440	rs2362903	A	G	2083.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr3	58112488	rs2362904	C	T	1579.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr3	58112556	rs2362905	G	C	1222.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr3	58116316	rs1573890	A	G	509.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr3	58116358	rs4475005	C	T	839.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr3	58116369	rs1882692	T	C	988.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr3	58118555	rs12632456	G	A	3216.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr3	58118700	rs12638356	A	G	2658.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:1,99:0.99:100
chr3	58121626	rs6445948	T	A	2312.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr3	58145263	rs12634123	G	A	2330.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr3	58154327	rs8640	C	T	2644.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:1,100:0.99:101
chr3	58156176	rs4681660	G	A	886.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr3	58179028	rs3732630	T	C	7121.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr3	58179318	rs9812109	C	T	1345.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr3	58186911	rs4234389	A	G	1999.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr3	58191266	rs2070117	C	T	5954.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr3	58191433	rs9311671	G	A	3039.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr3	58244257	rs115539748	C	G	7177.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr3	58270963	rs6774235	T	C	2397.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr3	58296209	rs59232688	CT	C	1588.73	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:10,93:0.90:103
chr3	58302404	rs2292674	A	T	2071.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr3	58303069	rs3773012	C	T	1580.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.91;SOR=1.498;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr3	58355273	rs9867320	G	C	1277.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr3	58368219	rs10662181	C	CTT	157.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.120;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.93;MQRankSum=0.932;QD=6.86;ReadPosRankSum=-1.157;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:6,17:0.74:23
chr3	58376938	rs55962533	G	A	4446.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr3	58381262	rs62258105	C	T	2249.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr3	58385194	rs4075152	T	C	2358.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr3	58395490	rs140856155	G	GT	2624.73	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:2,108:0.98:110
chr3	58395501	rs34734687	G	GA	2024.73	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:1,88:0.99:89
chr3	58398466	rs12635366	C	T	1077.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr3	58398813	rs13071422	A	G	441.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr3	58409063	rs12631656	T	C	561.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:1,21:0.95:22
chr3	58409082	rs12634132	A	G	703.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:1,27:0.96:28
chr3	58414382	rs62259769	C	T	3143.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:1,116:0.99:117
chr3	58415590	rs2070662	C	A	5812.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr3	58416538	rs4264746	T	C	4184.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr3	58517117	rs201245443	C	T	1491.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:2,60:0.97:62
chr3	58520306	rs7611026	G	C	5810.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr3	58520859	rs4681862	A	G	1999.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:1,74:0.99:75
chr3	58552997	rs1043942	C	A	4034.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:2,155:0.99:157
chr3	58555343	rs7632668	C	T	915.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr3	58555386	rs7609991	G	T	1809.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr3	58575110	rs6445991	A	G	2266.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:1,82:0.99:83
chr3	58621935	rs6791782	C	T	518.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr3	58625975	rs3749287	C	G	1482.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr3	58626075	rs6762192	G	T	329.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr3	58631184	rs111621495	G	GAAATA	2430.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr3	58635197	rs9811989	G	A	2514.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr3	58723031	rs72290352	TCA	T	80.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.148;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=2.424;QD=1.52;ReadPosRankSum=0.647;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:45,8:0.15:53
chr3	59996927	rs4679626	T	C	1093.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr3	59996969	rs4679627	C	T	2144.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr3	59999661	rs80338276	T	A	1375.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:2,50:0.96:52
chr3	59999690	rs13067835	T	C	1648.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:4,67:0.94:71
chr3	60522571	.	C	CA	44.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.395;ClippingRankSum=0.000;DP=180;ExcessHet=3.0103;FS=1.701;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=2.109;QD=0.27;ReadPosRankSum=-1.007;SOR=0.489;set=HC	GT:AD:AF:DP	0/1:136,29:0.18:165
chr3	60898271	rs6793737	G	A	2659.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr3	61734539	rs3821880	T	C	766.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:1,26:0.96:27
chr3	62153605	rs61078615	G	GT	293.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.58;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr3	62189189	rs2292245	G	A	7955.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:4,301:0.99:305
chr3	62189437	rs17634074	G	C	4681.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr3	62229553	rs1352882	C	T	5054.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr3	62267213	.	C	CTTT	2292.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.070;ClippingRankSum=0.000;DP=107;ExcessHet=3.0103;FS=1.610;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.64;ReadPosRankSum=-1.637;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:23,74:0.76:97
chr3	62355666	rs3215030	G	GT	952.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:2,46:0.96:48
chr3	62385280	rs150025088	A	AGT	2725.73	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr3	62431387	.	G	GAA,GAAA	713.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.059;ClippingRankSum=0.000;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=20.99;ReadPosRankSum=-0.885;SOR=1.075;set=HC	GT:AD:AF:DP	1/2:2,18,14:0.53,0.41:34
chr3	62459819	rs76824303	A	C	2689.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:1,82:0.99:83
chr3	62498378	rs1376917	G	A	2432.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr3	62556622	rs833663	A	G	7901.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr3	62612013	rs2248008	C	T	1422.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr3	62612280	rs2367310	C	T	6091.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr3	62612294	rs2367311	T	C	5264.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr3	62612309	rs2367312	G	C	4413.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr3	62612342	rs2248023	T	C	2525.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr3	62612385	rs1349591	G	T	1108.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr3	62631553	rs4588354	G	T	2661.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr3	62636826	rs4688302	C	T	1494.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr3	62647928	rs6770658	A	G	1382.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr3	62739092	rs478123	A	G	1712.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr3	63437858	rs6806334	T	C	4085.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr3	63437977	rs6793874	C	G	965.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr3	63466382	rs6772726	G	T	923.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr3	63821914	rs2637982	C	G	1734.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr3	64133350	rs27673	A	G	4809.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr3	64142859	rs17720698	C	T	2832.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr3	64145510	rs76720468	G	A	341.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr3	64145759	rs2306380	T	C	3316.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr3	64518994	rs1017537	T	C	9464.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	1/1:0,352:1.00:352
chr3	64526923	.	G	C	1555.77	.	AC=1;AF=0.500;AN=2;DP=132;set=Intersection	GT:AD:AF:DP	0/1:61,66:0.52:127
chr3	64527378	rs1036918	G	A	1653.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr3	64527465	rs1036917	C	A	3650.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr3	64640206	rs11326156	TA	T	4518.73	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr3	65353448	rs7634490	G	A	1993.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr3	65416648	rs4688566	C	A	2082.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr3	65425560	.	TCTG	T	363.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.192;ClippingRankSum=0.000;DP=148;ExcessHet=3.0103;FS=0.992;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=2.550;QD=2.73;ReadPosRankSum=0.124;SOR=0.938;set=HC	GT:AD:AF:DP	0/1:115,18:0.14:133
chr3	65456198	rs57455654	G	GA	148.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.353;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=0.000;QD=5.72;ReadPosRankSum=0.572;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:13,13:0.50:26
chr3	65464625	rs7636096	G	A	313.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr3	65583600	.	TGG	T	1079.73	.	AC=2;AF=1.00;AN=2;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.99;SOR=5.421;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr3	65595659	.	A	AATAGACCATTCTGAGGTAGAAGGAAAGGAAGGAAAGAGAGAAGGGGAAGGAACTGGGAGAAGAGAAGGGGAGAGGGAGAGAGGAAGGGAAAGAG	512.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.312;ClippingRankSum=0.000;DP=15;ExcessHet=3.0103;FS=24.362;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=34.18;ReadPosRankSum=-0.580;SOR=4.797;set=HC	GT:AD:AF:DP	1/1:5,10:0.67:15
chr3	65607592	rs112243102	T	TCA	620.74	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:3,22:0.88:25
chr3	65607637	rs3749455	A	G	996.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr3	66023592	rs28696109	A	G	2650.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr3	66287056	rs146159281	G	A	3884.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr3	66293766	rs66918103	T	C	1545.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr3	66293851	rs1678092	T	C	243.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr3	66354911	rs813636	G	C	5969.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr3	66434372	rs3830215	T	TCA,TCACA	1409.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=44;set=Intersection	GT:AF:DP	1/2:0.30,0.68:40
chr3	66463251	rs4856924	G	A	1534.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr3	66465259	rs4856928	T	C	666.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr3	66550756	rs1403625	G	C	4803.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.903;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=28.42;ReadPosRankSum=1.828;SOR=0.729;set=HC	GT:AD:AF:DP	1/1:2,167:0.99:169
chr3	66550762	rs1403626	G	C	7712.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.07;SOR=0.705;set=HC	GT:AD:AF:DP	1/1:0,175:1.00:175
chr3	67048762	rs4856833	T	C	789.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr3	67058329	.	CT	C	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.424;ClippingRankSum=0.000;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.69;ReadPosRankSum=1.800;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:36,13:0.27:49
chr3	67276059	rs9868022	G	T	282.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr3	67426125	rs1065399	C	T	87.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;MQ=54.78;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr3	67459492	rs9824745	G	T	2924.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr3	67459509	rs138527816	AATGGGTTTTAGTTCTTTAC	A	3167.73	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr3	67548726	rs150352166	AAAG	A	2823.73	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr3	67660040	rs2290174	G	A	3176.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.52;SOR=1.032;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr3	67660049	rs2290175	A	G	3068.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.84;SOR=1.163;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr3	67660149	rs11286754	GA	G	262.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.63;QD=18.77;SOR=2.985;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr3	68606548	rs7616164	G	T	8613.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:0,326:1.00:326
chr3	68782213	rs6549143	A	G	3438.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr3	68788363	rs1504301	G	T	7003.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr3	68788465	rs1504300	G	T	1421.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr3	68801921	rs9835691	T	C	1054.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr3	69036707	rs4855542	G	A	4512.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:1,173:0.99:174
chr3	69037633	rs9310136	G	C	967.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr3	69038217	rs4855543	A	G	1638.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr3	69053447	rs9860095	A	T	2247.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr3	69054212	rs11320020	CA	C	564.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.345;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=0.572;QD=9.91;ReadPosRankSum=0.174;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:10,47:0.82:57
chr3	69059083	rs56954853	AC	A	61.79	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=8.83;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr3	69091640	rs9985501	C	T	926.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr3	69093598	rs2271118	T	C	616.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr3	69096614	rs2292199	G	A	8108.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr3	69104695	rs6549179	T	A	1464.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr3	69104752	rs6549180	C	T	636.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr3	69112658	rs72461187	C	CA	185.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.804;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=1.033;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.702;QD=2.09;ReadPosRankSum=0.499;SOR=0.486;set=HC	GT:AD:AF:DP	0/1:65,24:0.27:89
chr3	69137219	rs3853158	C	T	246.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr3	69137539	rs3853159	T	C	670.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr3	69138788	rs35599045	T	TA	402.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.681;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.50;MQRankSum=0.000;QD=10.33;ReadPosRankSum=-0.124;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:9,30:0.77:39
chr3	69153854	rs7038	G	T	4988.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr3	69225588	rs11128118	T	G	1655.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr3	69225875	rs9872199	T	A	1034.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr3	69225911	rs9868107	A	G	469.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr3	69229976	rs12054011	G	C	898.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr3	69230026	rs9818314	T	C	2316.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr3	69230061	rs9831516	G	A	3247.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr3	69230801	rs9836305	G	A	2974.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr3	69242770	rs11310698	CA	C	1865.73	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:6,102:0.94:108
chr3	69244162	rs9853587	G	A	2759.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr3	69245454	rs9310141	T	C	7734.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr3	69245949	rs9860235	G	C	1125.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr3	69246152	rs13059488	A	G	9547.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	1/1:0,353:1.00:353
chr3	69246274	rs13059687	A	G	6427.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr3	69265291	rs7643175	T	C	1293.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr3	69265304	rs77475566	C	CA	926.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:4,45:0.92:49
chr3	69265371	rs62254460	G	C	5811.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:1,207:1.00:208
chr3	69265580	.	CTTTTT	C	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.822;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.53;ReadPosRankSum=2.209;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:19,3:0.14:22
chr3	69267578	rs4855301	A	T	618.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr3	69271206	rs6549189	T	C	1735.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr3	69273656	rs9848940	G	T	4908.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr3	69336695	rs4855380	G	A	1190.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr3	69336740	rs4855381	A	G	2176.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr3	69359730	rs142506790	CACAGAGAGAGAGAG	C	1026.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.885;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=9.817;MLEAC=1;MLEAF=0.500;MQ=63.27;MQRankSum=1.135;QD=12.37;ReadPosRankSum=3.671;SOR=2.008;set=HC	GT:AD:AF:DP	0/1:36,47:0.57:83
chr3	69362706	rs1483895	C	T	4645.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:2,177:0.99:179
chr3	69988437	.	G	GT	66.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.251;ClippingRankSum=0.000;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.04;ReadPosRankSum=-0.801;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:48,16:0.25:64
chr3	71007272	.	CT	C	64.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.367;ClippingRankSum=0.000;DP=66;ExcessHet=3.0103;FS=2.509;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.04;ReadPosRankSum=-1.105;SOR=1.449;set=HC	GT:AD:AF:DP	0/1:45,17:0.27:62
chr3	71007347	.	C	CA	290.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.733;ClippingRankSum=0.000;DP=395;ExcessHet=3.0103;FS=1.097;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=2.748;QD=0.79;ReadPosRankSum=-0.273;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:305,63:0.17:368
chr3	71007361	rs1053797	G	T	14377.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.095;ClippingRankSum=0.000;DB;DP=495;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.04;MQRankSum=0.097;QD=29.71;ReadPosRankSum=0.209;SOR=0.243;set=HC	GT:AD:AF:DP	1/1:1,483:1.00:484
chr3	71015021	rs7638391	G	T	937.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr3	71021128	.	G	GA	263.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.746;ClippingRankSum=0.000;DP=236;ExcessHet=3.0103;FS=2.236;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=2.190;QD=1.15;ReadPosRankSum=0.279;SOR=0.920;set=HC	GT:AD:AF:DP	0/1:185,45:0.20:230
chr3	71025935	rs13068094	C	T	1703.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr3	71247572	rs56850311	A	T	734.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.26;SOR=1.220;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr3	71739332	.	GA	G	129.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.097;ClippingRankSum=0.000;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.51;ReadPosRankSum=-0.797;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:65,21:0.24:86
chr3	71774230	rs113406997	A	G	209.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr3	72495593	rs11460842	T	TA	743.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.657;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.990;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=0.846;QD=7.51;ReadPosRankSum=0.660;SOR=0.932;set=HC	GT:AD:AF:DP	0/1:38,61:0.62:99
chr3	72495777	rs13066407	C	G	7509.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr3	72495945	rs13088771	A	G	7438.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr3	73004157	rs1532190	T	G	2447.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr3	73016974	rs3821379	A	G	1383.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr3	73024350	rs1052278	C	A	4834.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:4,186:0.98:190
chr3	73434086	rs6787588	A	G	3662.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr3	73651621	rs11343439	TA	T	1595.73	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:7,91:0.93:98
chr3	73673578	rs6763344	G	C	1044.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr3	75386297	rs6769147	G	A	1827.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr3	75386380	rs4677501	T	G	1847.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr3	75679893	rs200917196	C	T	1692.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.716;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=0.775;MLEAC=1;MLEAF=0.500;MQ=42.54;MQRankSum=-2.518;QD=9.46;ReadPosRankSum=-1.722;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:104,75:0.42:179
chr3	75679937	rs141031386	G	A	5520.77	.	AC=1;AF=0.500;AN=2;DB;DP=480;set=Intersection	GT:AD:AF:DP	0/1:294,178:0.38:472
chr3	75679944	rs201399352	C	T	222.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.420;ClippingRankSum=0.000;DB;DP=535;ExcessHet=3.0103;FS=0.842;MLEAC=1;MLEAF=0.500;MQ=45.85;MQRankSum=-0.340;QD=0.42;ReadPosRankSum=-0.055;SOR=0.913;set=HC	GT:AD:AF:DP	0/1:470,65:0.12:535
chr3	75679958	rs200114452	C	T	5830.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.167;ClippingRankSum=0.000;DB;DP=620;ExcessHet=3.0103;FS=2.579;MLEAC=1;MLEAF=0.500;MQ=45.94;MQRankSum=-9.199;QD=9.87;ReadPosRankSum=2.943;SOR=0.518;set=HC	GT:AD:AF:DP	0/1:382,209:0.35:591
chr3	75679973	rs183720508	A	G	7174.77	.	AC=1;AF=0.500;AN=2;DB;DP=720;set=Intersection	GT:AD:AF:DP	0/1:442,247:0.36:689
chr3	75680010	rs75174508	T	C	5884.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.457;ClippingRankSum=0.000;DB;DP=795;ExcessHet=3.0103;FS=1.165;MLEAC=1;MLEAF=0.500;MQ=46.08;MQRankSum=-13.309;QD=7.40;ReadPosRankSum=4.652;SOR=0.824;set=HC	GT:AD:AF:DP	0/1:520,275:0.35:795
chr3	75680081	rs138267282	TGTG	T	2292.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.380;ClippingRankSum=0.000;DB;DP=326;ExcessHet=3.0103;FS=3.161;MLEAC=1;MLEAF=0.500;MQ=46.29;MQRankSum=-7.989;QD=7.26;ReadPosRankSum=-2.684;SOR=0.945;set=HC	GT:AD:AF:DP	0/1:242,74:0.23:316
chr3	75680088	rs200387791	C	T	512.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.992;ClippingRankSum=0.000;DB;DP=288;ExcessHet=3.0103;FS=0.681;MLEAC=1;MLEAF=0.500;MQ=45.99;MQRankSum=-2.172;QD=1.78;ReadPosRankSum=2.647;SOR=0.605;set=HC	GT:AD:AF:DP	0/1:250,38:0.13:288
chr3	75680108	rs149610738	A	C	1109.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.430;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=3.255;MLEAC=1;MLEAF=0.500;MQ=44.55;MQRankSum=-5.590;QD=7.07;ReadPosRankSum=-5.419;SOR=1.126;set=HC	GT:AD:AF:DP	0/1:123,34:0.22:157
chr3	75680109	rs199802601	G	T	655.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.832;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=2.385;MLEAC=1;MLEAF=0.500;MQ=44.59;MQRankSum=-1.210;QD=4.31;ReadPosRankSum=0.855;SOR=0.355;set=HC	GT:AD:AF:DP	0/1:127,25:0.16:152
chr3	75680115	rs372431068	C	T	519.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.139;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=44.55;MQRankSum=-3.851;QD=4.23;ReadPosRankSum=-3.977;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:105,18:0.15:123
chr3	75680122	.	C	A	243.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.823;ClippingRankSum=0.000;DP=104;ExcessHet=3.0103;FS=1.274;MLEAC=1;MLEAF=0.500;MQ=44.03;MQRankSum=-0.657;QD=2.34;ReadPosRankSum=1.994;SOR=0.416;set=HC	GT:AD:AF:DP	0/1:84,20:0.19:104
chr3	75680133	rs200731407	G	T	1019.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.823;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=43.84;MQRankSum=-0.217;QD=15.69;ReadPosRankSum=-0.716;SOR=0.600;set=HC	GT:AD:AF:DP	0/1:34,31:0.48:65
chr3	75680143	rs201369225	G	T	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.123;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=42.97;MQRankSum=0.377;QD=0.85;ReadPosRankSum=-0.240;SOR=0.416;set=HC	GT:AD:AF:DP	0/1:41,6:0.13:47
chr3	75786440	rs145944373	C	T	1499.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.67;QD=27.77;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr3	75786572	rs149841758	T	C	202.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.784;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=4.064;MLEAC=1;MLEAF=0.500;MQ=45.91;MQRankSum=-4.412;QD=4.83;ReadPosRankSum=-2.364;SOR=1.712;set=HC	GT:AD:AF:DP	0/1:35,7:0.17:42
chr3	75786586	rs201915219	G	T	255.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.407;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=5.461;MLEAC=1;MLEAF=0.500;MQ=46.18;MQRankSum=-5.252;QD=4.65;ReadPosRankSum=-1.431;SOR=1.927;set=HC	GT:AD:AF:DP	0/1:45,10:0.18:55
chr3	75786593	.	C	A	270.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.616;ClippingRankSum=0.000;DP=65;ExcessHet=3.0103;FS=10.281;MLEAC=1;MLEAF=0.500;MQ=46.41;MQRankSum=-5.544;QD=4.17;ReadPosRankSum=-0.560;SOR=2.494;set=HC	GT:AD:AF:DP	0/1:54,11:0.17:65
chr3	75786598	rs199898382	G	A	354.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.377;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=12.763;MLEAC=1;MLEAF=0.500;MQ=46.38;MQRankSum=-5.689;QD=5.38;ReadPosRankSum=-0.857;SOR=2.670;set=HC	GT:AD:AF:DP	0/1:54,12:0.18:66
chr3	75786608	.	C	T	387.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.172;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=14.950;MLEAC=1;MLEAF=0.500;MQ=46.23;MQRankSum=-5.816;QD=5.46;ReadPosRankSum=-0.347;SOR=2.920;set=HC	GT:AD:AF:DP	0/1:57,14:0.20:71
chr3	75786620	rs144106206	G	A	578.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.123;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=16.580;MLEAC=1;MLEAF=0.500;MQ=46.78;MQRankSum=-2.550;QD=6.81;ReadPosRankSum=-1.476;SOR=2.565;set=HC	GT:AD:AF:DP	0/1:63,22:0.26:85
chr3	75786662	rs202184453	A	T	1840.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.470;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=5.979;MLEAC=1;MLEAF=0.500;MQ=45.86;MQRankSum=-2.559;QD=15.47;ReadPosRankSum=-1.874;SOR=1.236;set=HC	GT:AD:AF:DP	0/1:70,49:0.41:119
chr3	75786672	rs200017345	C	T	2169.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.355;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=1.453;MLEAC=1;MLEAF=0.500;MQ=45.84;MQRankSum=-2.156;QD=16.82;ReadPosRankSum=-0.890;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:72,57:0.44:129
chr3	75786681	rs111677009	G	A	2654.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.160;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=1.388;MLEAC=1;MLEAF=0.500;MQ=46.58;MQRankSum=-0.144;QD=19.24;ReadPosRankSum=-0.550;SOR=0.853;set=HC	GT:AD:AF:DP	0/1:71,67:0.49:138
chr3	75786684	rs201345045	G	T	2679.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.847;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=0.624;MLEAC=1;MLEAF=0.500;MQ=46.91;MQRankSum=0.079;QD=18.35;ReadPosRankSum=-0.059;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:74,72:0.49:146
chr3	75786737	rs78297221	A	T	4194.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.333;ClippingRankSum=0.000;DB;DP=203;ExcessHet=3.0103;FS=1.724;MLEAC=1;MLEAF=0.500;MQ=52.58;MQRankSum=0.166;QD=20.66;ReadPosRankSum=3.308;SOR=0.572;set=HC	GT:AD:AF:DP	0/1:95,108:0.53:203
chr3	75786748	rs112332186	C	T	4412.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.712;ClippingRankSum=0.000;DB;DP=219;ExcessHet=3.0103;FS=5.641;MLEAC=1;MLEAF=0.500;MQ=53.67;MQRankSum=-1.185;QD=20.24;ReadPosRankSum=2.408;SOR=0.427;set=HC	GT:AD:AF:DP	0/1:106,112:0.51:218
chr3	75786753	rs3009020	C	T	2240.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.020;ClippingRankSum=0.000;DB;DP=223;ExcessHet=3.0103;FS=7.539;MLEAC=1;MLEAF=0.500;MQ=54.04;MQRankSum=1.113;QD=10.14;ReadPosRankSum=-1.381;SOR=1.127;set=HC	GT:AD:AF:DP	0/1:114,107:0.48:221
chr3	75786760	rs145576551	TC	T	4301.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.891;ClippingRankSum=0.000;DB;DP=232;ExcessHet=3.0103;FS=6.350;MLEAC=1;MLEAF=0.500;MQ=54.58;MQRankSum=-1.549;QD=18.62;ReadPosRankSum=0.931;SOR=0.420;set=HC	GT:AD:AF:DP	0/1:117,114:0.49:231
chr3	75786832	rs11122676	C	T	3558.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:93,157:0.63:250
chr3	75786833	rs139448820	G	A	3071.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:154,91:0.37:245
chr3	75786845	rs62250105	T	C	2810.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:145,80:0.36:225
chr3	75786888	rs1615736	C	T	2463.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:114,69:0.38:183
chr3	75786894	rs144168413	GT	G	2484.73	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:110,71:0.39:181
chr3	75787049	rs201485350	C	A	641.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.329;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=3.928;MLEAC=1;MLEAF=0.500;MQ=45.72;MQRankSum=-4.309;QD=17.35;ReadPosRankSum=2.599;SOR=1.814;set=HC	GT:AD:AF:DP	0/1:19,18:0.49:37
chr3	75787057	rs145650973	G	A	625.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.491;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=6.789;MLEAC=1;MLEAF=0.500;MQ=45.43;MQRankSum=-3.668;QD=19.56;ReadPosRankSum=2.648;SOR=2.247;set=HC	GT:AD:AF:DP	0/1:15,17:0.53:32
chr3	75787620	rs145606249	T	C	119.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=35.11;QD=19.97;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr3	75787702	rs77377261	C	G	119.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=35.11;QD=19.97;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr3	75787728	rs75074846	C	T	119.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=35.11;QD=19.97;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr3	75788040	rs144355457	G	A	88.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.641;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.68;MQRankSum=-4.265;QD=4.03;ReadPosRankSum=0.512;SOR=0.382;set=HC	GT:AD:AF:DP	0/1:15,7:0.32:22
chr3	75788076	rs146581110	A	C	705.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.114;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=6.834;MLEAC=1;MLEAF=0.500;MQ=46.09;MQRankSum=-6.722;QD=8.71;ReadPosRankSum=1.132;SOR=0.243;set=HC	GT:AD:AF:DP	0/1:59,22:0.27:81
chr3	75788085	rs201605431	A	G	819.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.927;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=4.531;MLEAC=1;MLEAF=0.500;MQ=46.28;MQRankSum=-7.559;QD=8.36;ReadPosRankSum=0.938;SOR=0.315;set=HC	GT:AD:AF:DP	0/1:72,26:0.27:98
chr3	75788105	.	C	T	906.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.240;ClippingRankSum=0.000;DP=130;ExcessHet=3.0103;FS=2.717;MLEAC=1;MLEAF=0.500;MQ=46.53;MQRankSum=-8.580;QD=6.98;ReadPosRankSum=1.537;SOR=0.455;set=HC	GT:AD:AF:DP	0/1:100,30:0.23:130
chr3	75788109	.	G	A	888.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.709;ClippingRankSum=0.000;DP=144;ExcessHet=3.0103;FS=1.671;MLEAC=1;MLEAF=0.500;MQ=46.77;MQRankSum=-8.690;QD=6.17;ReadPosRankSum=2.223;SOR=0.480;set=HC	GT:AD:AF:DP	0/1:114,30:0.21:144
chr3	75788114	rs375615433	C	T	851.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.781;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=1.661;MLEAC=1;MLEAF=0.500;MQ=46.80;MQRankSum=-8.767;QD=5.79;ReadPosRankSum=2.674;SOR=0.498;set=HC	GT:AD:AF:DP	0/1:117,30:0.20:147
chr3	75788130	.	C	T	800.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.444;ClippingRankSum=0.000;DP=173;ExcessHet=3.0103;FS=0.753;MLEAC=1;MLEAF=0.500;MQ=46.91;MQRankSum=-8.899;QD=4.63;ReadPosRankSum=3.020;SOR=0.553;set=HC	GT:AD:AF:DP	0/1:143,30:0.17:173
chr3	75788137	rs199883677	C	T	749.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.797;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=1.645;MLEAC=1;MLEAF=0.500;MQ=46.93;MQRankSum=-8.843;QD=4.31;ReadPosRankSum=3.622;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:145,29:0.17:174
chr3	75788152	rs148372120	T	C	708.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.295;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=0.751;MLEAC=1;MLEAF=0.500;MQ=47.01;MQRankSum=-9.133;QD=3.75;ReadPosRankSum=1.531;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:160,29:0.15:189
chr3	75790705	rs149673212	C	T	603.53	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.30;QD=40.24;SOR=5.549;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr3	75790717	rs145158381	G	A	931.90	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.327;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=44.86;MQRankSum=-3.386;QD=40.52;ReadPosRankSum=1.257;SOR=1.255;set=HC	GT:AD:AF:DP	0/1:2,21:0.91:23
chr3	75790726	rs141438932	T	C	1232.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.503;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.96;MQRankSum=-3.225;QD=42.51;ReadPosRankSum=0.474;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:2,27:0.93:29
chr3	75790730	rs138228408	A	T	1277.28	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.469;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.03;MQRankSum=-3.030;QD=39.92;ReadPosRankSum=0.195;SOR=1.127;set=HC	GT:AD:AF:DP	1/1:2,30:0.94:32
chr3	75790733	rs202161426	C	G	1322.03	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.451;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.08;MQRankSum=-2.882;QD=38.88;ReadPosRankSum=0.037;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:2,32:0.94:34
chr3	75790747	rs147424643	C	G	1667.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.704;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=2.734;MLEAC=2;MLEAF=1.000;MQ=44.97;MQRankSum=-2.784;QD=34.75;ReadPosRankSum=-0.697;SOR=0.269;set=HC	GT:AD:AF:DP	1/1:2,46:0.96:48
chr3	75790783	.	G	GGTCTCCAGCATCATGTCCCTGTACAGGTTTCTTCTGAGCATCATCCAGGTCCTGCTACTCCTCCCAGGTGAAGTGCATAGCTACCTCCTCAAAGGATGCCAACTCCTGTAATGATAGCAGGCTGTTATAA	4728.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.441;ClippingRankSum=0.000;DP=72;ExcessHet=3.0103;FS=2.599;MLEAC=2;MLEAF=1.000;MQ=45.18;MQRankSum=-3.203;QD=65.68;ReadPosRankSum=-1.705;SOR=1.170;set=HC	GT:AD:AF:DP	1/1:3,69:0.96:72
chr3	75790798	.	G	A	550.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=49.46;MQRankSum=-0.132;QD=32.40;ReadPosRankSum=-1.589;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:3,14:0.82:17
chr3	75790824	rs146969485	C	T	239.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.856;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=2.447;MLEAC=1;MLEAF=0.500;MQ=48.83;MQRankSum=-0.152;QD=15.98;ReadPosRankSum=0.363;SOR=0.799;set=HC	GT:AD:AF:DP	0/1:3,12:0.80:15
chr3	75790864	.	T	A	94.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.319;ClippingRankSum=-0.000;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=48.01;MQRankSum=-0.000;QD=23.69;ReadPosRankSum=-1.150;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr3	75790972	rs118003039	C	T	778.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.35;QD=26.85;SOR=1.688;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr3	75986663	rs12171318	C	A	2658.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:30,68:0.69:98
chr3	75986686	rs62269817	A	G	4320.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.705;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=8.146;MLEAC=1;MLEAF=0.500;MQ=52.51;MQRankSum=-9.267;QD=26.19;ReadPosRankSum=-0.385;SOR=0.289;set=HC	GT:AD:AF:DP	0/1:44,121:0.73:165
chr3	75986695	rs79015247	G	A	681.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.664;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=1.276;MLEAC=1;MLEAF=0.500;MQ=51.78;MQRankSum=-3.675;QD=3.50;ReadPosRankSum=0.519;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:143,52:0.27:195
chr3	75986717	rs78834776	G	A	474.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.202;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=1.290;MLEAC=1;MLEAF=0.500;MQ=52.51;MQRankSum=-3.165;QD=2.02;ReadPosRankSum=2.366;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:189,46:0.20:235
chr3	75986719	rs62269818	G	C	4577.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.125;ClippingRankSum=0.000;DB;DP=241;ExcessHet=3.0103;FS=6.566;MLEAC=1;MLEAF=0.500;MQ=52.55;MQRankSum=-11.497;QD=19.15;ReadPosRankSum=2.557;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:82,157:0.66:239
chr3	75986794	rs80235520	G	A	5885.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:125,167:0.57:292
chr3	75986813	rs77101234	T	A	5003.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:119,128:0.52:247
chr3	75986833	rs73123284	C	T	3044.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:107,74:0.41:181
chr3	75986874	rs7610755	G	C	1818.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr3	77147039	rs9873691	C	A	904.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr3	77147112	rs9874095	G	A	2912.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:1,109:0.99:110
chr3	77600273	rs3796291	C	A	299.78	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:1,11:0.92:12
chr3	77607070	rs5850333	A	AC	5782.73	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr3	77645946	.	CTT	C,CT	719.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.20;QD=18.94;SOR=1.670;set=HC	GT:AD:AF:DP	1/2:0,11,27:0.29,0.71:38
chr3	77645984	rs775718	A	G	523.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr3	77671721	rs2272163	C	A	489.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr3	77681865	rs1451617	T	A	429.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr3	78663958	.	G	GA	255.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.673;ClippingRankSum=0.000;DP=295;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.99;ReadPosRankSum=-1.496;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:209,49:0.19:258
chr3	78666765	rs9839790	T	C	5040.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr3	78667215	.	T	C	2672.77	.	AC=1;AF=0.500;AN=2;DP=216;set=Intersection	GT:AD:AF:DP	0/1:105,111:0.51:216
chr3	78676405	rs7625555	T	C	3122.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr3	78676467	rs7636043	A	G	6812.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr3	78680578	rs6548592	T	C	928.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:28,44:0.61:72
chr3	78683032	rs200790068	C	A	3439.77	.	AC=1;AF=0.500;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	0/1:181,164:0.48:345
chr3	78700779	rs3925684	C	A	2195.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr3	78700901	rs6795556	G	T	5644.77	.	AC=1;AF=0.500;AN=2;DB;DP=587;set=Intersection	GT:AD:AF:DP	0/1:304,281:0.48:585
chr3	78706519	rs9818170	C	T	1365.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:82,59:0.42:141
chr3	78706553	rs3832208	AT	A	251.73	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:36,18:0.33:54
chr3	78708810	rs10662787	A	AAT,AATAT	4361.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=114;set=Intersection	GT:AF:DP	1/2:0.23,0.76:111
chr3	78709044	rs9829907	G	A	1835.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.854;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=3.827;MLEAC=2;MLEAF=1.000;MQ=60.15;MQRankSum=0.241;QD=26.23;ReadPosRankSum=0.272;SOR=0.853;set=HC	GT:AD:AF:DP	1/1:1,69:0.99:70
chr3	78711350	rs9864412	T	C	901.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.807;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=0.779;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.70;ReadPosRankSum=-0.477;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:46,47:0.51:93
chr3	78717343	rs2271151	C	T	14191.77	.	AC=2;AF=1.00;AN=2;DB;DP=531;set=Intersection	GT:AD:AF:DP	1/1:0,529:1.00:529
chr3	78719577	rs9309810	C	G	2766.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr3	79582201	rs115237018	G	A	799.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr3	80491245	rs202186013	C	T	653.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.89;QD=26.15;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr3	80491327	rs200305000	G	T	144.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=24.14;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr3	81643167	rs2172397	T	C	6537.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr3	81810702	rs11391701	A	AG	1616.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr3	85434950	rs3086134	C	CT	176.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.120;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=2.623;MLEAC=1;MLEAF=0.500;MQ=60.62;MQRankSum=1.883;QD=3.84;ReadPosRankSum=-0.482;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:23,23:0.50:46
chr3	85985162	rs115420401	A	G	184.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:11,8:0.42:19
chr3	87100309	rs2575753	T	C	10380.77	.	AC=2;AF=1.00;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	1/1:0,388:1.00:388
chr3	87100434	rs7619398	G	A	4057.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr3	87100893	rs2256481	G	A	2157.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr3	87275442	rs72591121	G	GA	33.25	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=11.08;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr3	87295049	rs11540913	T	C	1763.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr3	88188420	rs9813894	G	A	1215.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:48,52:0.52:100
chr3	88189341	rs7653652	T	C	2835.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:140,136:0.49:276
chr3	88190768	rs7432826	C	A	2715.77	.	AC=1;AF=0.500;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	0/1:212,141:0.40:353
chr3	88190809	rs7432838	C	T	2684.77	.	AC=1;AF=0.500;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	0/1:188,138:0.42:326
chr3	88199179	rs6551277	T	C	11062.77	.	AC=1;AF=0.500;AN=2;DB;DP=641;set=Intersection	GT:AD:AF:DP	0/1:348,290:0.45:638
chr3	88199185	rs11374933	T	TC	6552.73	.	AC=1;AF=0.500;AN=2;DB;DP=687;set=Intersection	GT:AD:AF:DP	0/1:375,294:0.44:669
chr3	88199298	rs6551278	T	C	6977.77	.	AC=1;AF=0.500;AN=2;DB;DP=798;set=Intersection	GT:AD:AF:DP	0/1:429,358:0.45:787
chr3	89456555	rs3792572	T	A	3478.77	.	AC=1;AF=0.500;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	0/1:172,170:0.50:342
chr3	89462238	rs71836049	ATTGT	A	7104.73	.	AC=1;AF=0.500;AN=2;DB;DP=386;MQ=60.03;set=Intersection	GT:AD:AF:DP	0/1:198,185:0.48:383
chr3	89462464	rs77327554	G	A	4865.77	.	AC=1;AF=0.500;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	0/1:213,212:0.50:425
chr3	89468653	rs75430041	C	A	368.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:16,16:0.50:32
chr3	89498619	rs1028011	A	G	1694.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr3	89521664	rs17801309	G	A	2560.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:149,127:0.46:276
chr3	89521693	rs35124509	T	C	1903.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:133,102:0.43:235
chr3	90264768	rs6803112	A	G	5187.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr3	90276511	rs9815264	G	A	4306.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr3	90276661	rs9815542	G	A	4959.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr3	90276698	rs189510455	C	T	857.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:66,44:0.40:110
chr3	93593119	rs6123	T	C	3772.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:134,180:0.57:314
chr3	93646396	rs8178610	C	T	277.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:5,11:0.69:16
chr3	97194422	rs7624823	T	G	1389.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr3	97198112	.	G	GT	58.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.551;ClippingRankSum=0.000;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.45;ReadPosRankSum=1.177;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:109,21:0.16:130
chr3	97365038	rs301948	G	A	2838.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr3	97365074	rs301949	A	G	2476.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr3	97367230	rs3214668	C	CA	8688.73	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr3	97467361	.	ATC	A	442.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.011;ClippingRankSum=0.000;DP=300;ExcessHet=3.0103;FS=0.701;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=3.535;QD=1.58;ReadPosRankSum=-1.671;SOR=0.585;set=HC	GT:AD:AF:DP	0/1:235,45:0.16:280
chr3	97666183	rs2307808	TCTC	T	11852.73	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr3	97673268	rs832079	A	C	5341.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:2,205:0.99:207
chr3	97686575	rs699304	T	C	2540.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr3	97726747	rs832032	T	A	1285.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:92,60:0.39:152
chr3	97727727	rs832030	G	C	1883.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:76,80:0.51:156
chr3	97727753	rs832029	G	A	2396.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:120,108:0.47:228
chr3	97731434	rs11426005	C	CA	747.73	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:36,40:0.53:76
chr3	97753931	rs832070	T	C	1255.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:66,56:0.46:122
chr3	97753954	rs832069	A	G	742.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:47,32:0.41:79
chr3	97805954	rs13082722	T	C	697.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:40,31:0.44:71
chr3	97806616	rs4518168	G	A	2433.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:147,111:0.43:258
chr3	97806944	rs80220955	T	C	8268.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:1,285:1.00:286
chr3	97851998	rs9845327	A	C	1891.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr3	97852083	rs9826076	C	T	2701.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr3	97852229	rs9849637	T	A	1861.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:120,93:0.44:213
chr3	97868419	rs4241468	G	A	13559.77	.	AC=2;AF=1.00;AN=2;DB;DP=502;set=Intersection	GT:AD:AF:DP	1/1:0,498:1.00:498
chr3	97868795	rs4857076	A	G	4913.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr3	97868970	rs12639519	T	A	1672.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr3	97887865	rs4133320	G	A	22064.77	.	AC=2;AF=1.00;AN=2;DB;DP=842;set=Intersection	GT:AD:AF:DP	1/1:2,835:1.00:837
chr3	97887985	rs4133321	T	A	5940.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:1,202:1.00:203
chr3	97888042	rs4133322	A	T	3481.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:1,114:0.99:115
chr3	97888197	rs7623031	C	T	6428.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:1,244:1.00:245
chr3	97983257	rs2132894	C	G	21399.77	.	AC=2;AF=1.00;AN=2;DB;DP=788;set=Intersection	GT:AD:AF:DP	1/1:2,777:1.00:779
chr3	97983391	rs2173236	C	T	18296.77	.	AC=2;AF=1.00;AN=2;DB;DP=642;set=Intersection	GT:AD:AF:DP	1/1:0,630:1.00:630
chr3	97983487	rs74203917	TTGTAACCAC	T	32689.73	.	AC=2;AF=1.00;AN=2;DB;DP=820;set=Intersection	GT:AD:AF:DP	1/1:2,731:1.00:733
chr3	97983561	rs9289564	G	C	21577.77	.	AC=2;AF=1.00;AN=2;DB;DP=785;set=Intersection	GT:AD:AF:DP	1/1:0,778:1.00:778
chr3	97983711	rs9853887	T	C	6935.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr3	97983942	rs9853906	A	G	2392.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr3	97983981	rs9871143	G	A	3747.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr3	98073591	rs11288615	TA	T	3775.73	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr3	98110406	rs144759043	G	GA	1287.73	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.85;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr3	98225441	rs1132750	A	C	382.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:15,16:0.52:31
chr3	98225660	rs3762660	T	G	2250.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:102,106:0.51:208
chr3	98240317	rs142862428	T	TA	3606.73	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:121,118:0.49:239
chr3	98252027	rs1529047	G	A	1645.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr3	98281349	rs9850648	G	T	6817.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr3	98299707	rs374091299	TA	T	260.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.979;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=2.816;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.460;QD=3.43;ReadPosRankSum=-0.644;SOR=1.197;set=HC	GT:AD:AF:DP	0/1:47,29:0.38:76
chr3	98304467	rs1729995	T	C	4547.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr3	98307696	rs1131857	T	G	5362.77	.	AC=1;AF=0.500;AN=2;DB;DP=612;set=Intersection	GT:AD:AF:DP	0/1:337,265:0.44:602
chr3	98451763	.	T	C	695.77	.	AC=1;AF=0.500;AN=2;DP=84;set=Intersection	GT:AD:AF:DP	0/1:46,36:0.44:82
chr3	98475083	rs893832	A	G	655.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.579;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=2.876;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.29;ReadPosRankSum=0.087;SOR=0.211;set=HC	GT:AD:AF:DP	0/1:10,17:0.63:27
chr3	98487121	rs3217579	TAGTG	T	1623.73	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:58,45:0.44:103
chr3	98487206	rs3213958	A	G	4213.77	.	AC=1;AF=0.500;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	0/1:201,197:0.49:398
chr3	98489686	rs1440153	A	G	4159.77	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:165,193:0.54:358
chr3	98489915	rs1440152	C	G	1128.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:82,52:0.39:134
chr3	98490141	rs844160	A	T	1120.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:23,49:0.68:72
chr3	98491619	rs2334230	G	T	2217.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:81,104:0.56:185
chr3	98501080	rs3772100	C	T	2871.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:164,142:0.46:306
chr3	98501128	rs3772101	A	G	3270.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:154,160:0.51:314
chr3	98503683	rs704585	C	T	1989.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:91,91:0.50:182
chr3	98503776	rs999147	A	G	3084.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.789;ClippingRankSum=0.000;DB;DP=319;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.000;QD=9.82;ReadPosRankSum=-0.972;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:158,156:0.50:314
chr3	98503941	rs62278486	G	A	272.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:21,13:0.38:34
chr3	98507134	rs73136057	C	A	2503.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:128,116:0.48:244
chr3	98518160	rs62821060	T	TA,TAA	3829.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.744;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=4.621;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.06;MQRankSum=0.301;QD=21.28;ReadPosRankSum=1.677;SOR=1.579;set=HC	GT:AD:AF:DP	1/2:12,90,78:0.50,0.43:180
chr3	98518340	.	G	A	4270.77	.	AC=1;AF=0.500;AN=2;DP=436;set=Intersection	GT:AD:AF:DP	0/1:218,207:0.49:425
chr3	98519481	rs1822017	G	A	3201.77	.	AC=1;AF=0.500;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	0/1:182,156:0.46:338
chr3	98519697	rs11374885	C	CT	213.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.308;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=4.218;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=0.896;QD=4.97;ReadPosRankSum=1.177;SOR=0.212;set=HC	GT:AD:AF:DP	0/1:23,20:0.47:43
chr3	98520602	rs9860216	A	G	397.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:34,19:0.36:53
chr3	98531342	rs9814819	A	G	2037.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:106,91:0.46:197
chr3	98536571	rs1440150	T	C	1191.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:57,53:0.48:110
chr3	98540931	rs9843214	T	C	871.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:42,37:0.47:79
chr3	98541012	rs866873	G	A	6297.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr3	98542194	rs6440159	G	A	512.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:17,21:0.55:38
chr3	98542485	rs142035943	G	GAAGAA	2931.73	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr3	98542536	rs9845558	A	G	220.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:15,11:0.42:26
chr3	98544304	rs73138004	T	C	1213.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:43,55:0.56:98
chr3	98544353	rs828622	G	A	1639.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr3	98619997	rs17852693	G	C	2154.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:86,102:0.54:188
chr3	99536937	rs1718240	C	T	3342.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:162,153:0.49:315
chr3	99549288	.	GT	G	1206.73	.	AC=1;AF=0.500;ALERT;AN=2;DP=65;set=Intersection	GT:AD:AF:DP	0/1:32,32:0.50:64
chr3	99549290	.	T	G	1215.77	.	AC=1;AF=0.500;ALERT;AN=2;DP=66;set=Intersection	GT:AD:AF:DP	0/1:33,32:0.49:65
chr3	99643176	rs793440	C	T	4995.77	.	AC=1;AF=0.500;AN=2;DB;DP=526;set=Intersection	GT:AD:AF:DP	0/1:279,246:0.47:525
chr3	99860401	rs7629487	G	A	4457.77	.	AC=1;AF=0.500;AN=2;DB;DP=527;set=Intersection	GT:AD:AF:DP	0/1:288,228:0.44:516
chr3	99886662	rs11537816	G	A	3226.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:124,151:0.55:275
chr3	99904783	rs12629505	G	A	178.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:9,8:0.47:17
chr3	100009610	rs140797989	G	GT	54.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.712;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=1.415;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=2.122;QD=0.70;ReadPosRankSum=0.185;SOR=0.929;set=HC	GT:AD:AF:DP	0/1:64,14:0.18:78
chr3	100015146	rs3772698	G	T	1854.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.527;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.32;ReadPosRankSum=-0.404;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:103,96:0.48:199
chr3	100034849	rs4928169	A	T	1059.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:24,44:0.65:68
chr3	100053684	rs3830303	C	CG	207.73	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:13,10:0.43:23
chr3	100057846	rs1214381	C	T	2559.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:84,116:0.58:200
chr3	100058102	rs166747	G	A	1351.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:40,59:0.60:99
chr3	100059702	.	G	GA	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.769;ClippingRankSum=-0.000;DP=13;ExcessHet=3.0103;FS=5.119;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.98;ReadPosRankSum=-1.139;SOR=0.039;set=HC	GT:AD:AF:DP	0/1:9,4:0.31:13
chr3	100060135	rs1228184	G	A	677.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:41,29:0.41:70
chr3	100067468	rs277649	C	T	590.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:25,27:0.52:52
chr3	100084432	rs277644	G	A	3347.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:158,159:0.50:317
chr3	100086861	rs277640	T	C	1537.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:51,62:0.55:113
chr3	100092229	rs62274148	G	C	275.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:12,12:0.50:24
chr3	100092526	rs11384494	A	AG	2900.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.918;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=2.076;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.69;ReadPosRankSum=-0.117;SOR=0.904;set=HC	GT:AD:AF:DP	0/1:87,77:0.47:164
chr3	100092527	.	G	GGTGC	2886	.	AC=1;AF=0.500;AN=2;BRF=0.43;FR=0.5000;HP=1;HapScore=3;MGOF=2;MMLQ=28;MQ=60.0;NF=0;NR=37;PP=2886;QD=20;SC=AATTCAACTAGTCCAGTTAAG;SbPval=1.0;Source=Platypus;TC=94;TCF=3;TCR=91;TR=37;WE=100092536;WS=100092517;set=Platypus	GT:AD:AF:DP	1/0:57,37:0.39:94
chr3	100092528	.	T	A	2894	.	AC=1;AF=0.500;AN=2;BRF=0.43;FR=0.5000;HP=2;HapScore=3;MGOF=2;MMLQ=23;MQ=60.0;NF=13;NR=36;PP=2894;QD=20;SC=ATTCAACTAGTCCAGTTAAGT;SbPval=0.74;Source=Platypus;TC=119;TCF=37;TCR=82;TR=49;WE=100092536;WS=100092517;set=Platypus	GT:AD:AF:DP	1/0:70,49:0.41:119
chr3	100092528	rs3832198	T	TGCA	2900.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.516;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=2.076;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.69;ReadPosRankSum=-0.138;SOR=0.904;set=HC	GT:AD:AF:DP	0/1:87,77:0.47:164
chr3	100170600	.	A	ATCCTAGAAGGCATTCTCATGAGGACCAGGAATTCCGATGCCGATCGTCTGACCGTCT	5611.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.064;ClippingRankSum=0.000;DP=298;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.81;ReadPosRankSum=-1.409;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:138,108:0.44:246
chr3	100170825	rs6797397	G	A	1433.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:72,69:0.49:141
chr3	100174722	rs1132022	G	A	2657.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:194,140:0.42:334
chr3	100238231	rs67473840	ATG	A	2703.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.500;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=2.522;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=28.16;ReadPosRankSum=1.374;SOR=1.776;set=HC	GT:AD:AF:DP	1/1:5,91:0.95:96
chr3	100277476	rs7645690	G	C	2769.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr3	100277514	rs7645700	G	A	1614.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr3	100287764	rs28722928	T	C	2967.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:160,153:0.49:313
chr3	100295733	rs7427360	A	G	11407.77	.	AC=2;AF=1.00;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	1/1:1,418:1.00:419
chr3	100295909	rs5851214	A	ATTGTCT	3042.73	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:62,79:0.56:141
chr3	100352043	rs610854	C	T	855.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:38,36:0.49:74
chr3	100354524	rs1144122	A	G	2985.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:173,139:0.45:312
chr3	100354683	rs1520652	G	A	2156.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:93,95:0.51:188
chr3	100354698	rs1718281	T	A	2098.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.981;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=19.80;ReadPosRankSum=0.210;SOR=0.668;set=HC	GT:AD:AF:DP	1/1:2,104:0.98:106
chr3	100368546	rs61730367	A	G	3256.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:112,152:0.58:264
chr3	100368692	rs1144118	A	G	6088.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr3	100374073	rs12636989	T	C	2616.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:112,115:0.51:227
chr3	100374121	rs12633554	C	T	972.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:47,42:0.47:89
chr3	100438784	rs1503838	A	G	312.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.236;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=2.491;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.01;ReadPosRankSum=0.553;SOR=1.211;set=HC	GT:AD:AF:DP	0/1:29,23:0.44:52
chr3	100455609	rs3830581	TG	T	1189.73	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:57,47:0.45:104
chr3	100463605	.	A	G	3772.77	.	AC=1;AF=0.500;AN=2;DP=352;set=Intersection	GT:AD:AF:DP	0/1:172,176:0.51:348
chr3	100463651	rs377381727	TTG	T	653.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.158;ClippingRankSum=0.000;DB;DP=624;ExcessHet=3.0103;FS=0.820;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.12;ReadPosRankSum=-2.130;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:513,73:0.12:586
chr3	100467018	rs11353	T	C	4012.77	.	AC=1;AF=0.500;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	0/1:166,182:0.52:348
chr3	100560745	rs5851226	G	GA	92.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.043;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=1.854;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.99;ReadPosRankSum=1.847;SOR=0.297;set=HC	GT:AD:AF:DP	0/1:19,12:0.39:31
chr3	100581261	rs10567225	AT	A	159.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.191;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=1.008;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.643;QD=1.76;ReadPosRankSum=-0.522;SOR=0.834;set=HC	GT:AD:AF:DP	0/1:63,28:0.31:91
chr3	100594326	rs3839090	CGGCATA	C	5154.73	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:138,134:0.49:272
chr3	100605206	rs1987384	A	G	1293.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr3	100617680	rs2245370	C	T	1652.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:136,85:0.38:221
chr3	100621426	rs2576365	C	A	7457.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr3	100712059	rs3732896	G	A	429.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:20,19:0.49:39
chr3	100712249	rs3732895	T	C	1997.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:124,103:0.45:227
chr3	100945069	rs146849728	TTATATATATATATATATATATATATATATATATATATA	T	296.74	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.39;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr3	100945983	.	A	T	149	.	AC=1;AF=0.500;AN=2;BRF=0.08;FR=0.5000;HP=7;HapScore=2;MGOF=5;MMLQ=27;MQ=60.0;NF=0;NR=9;PP=149;QD=20.4190236164;SC=TGTGCTAAAAATTTTTTTAAT;SbPval=1.0;Source=Platypus;TC=23;TCF=0;TCR=23;TR=9;WE=100945991;WS=100945973;set=Platypus	GT:AD:AF:DP	0/1:14,9:0.39:23
chr3	100946742	rs521661	T	G	2282.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:136,113:0.45:249
chr3	100949842	rs348867	G	A	2011.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:108,102:0.49:210
chr3	100963154	rs571391	G	A	4015.77	.	AC=1;AF=0.500;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	0/1:197,189:0.49:386
chr3	100976755	rs7613046	G	C	925.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:54,41:0.43:95
chr3	100992385	rs348866	C	T	1122.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:91,54:0.37:145
chr3	100994497	rs533852	C	T	2138.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:111,104:0.48:215
chr3	101038339	rs546090	G	A	1420.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:42,58:0.58:100
chr3	101039107	rs573908	A	C	553.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:23,25:0.52:48
chr3	101066717	rs2433031	T	A	763.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:14,34:0.71:48
chr3	101066992	rs2553421	A	T	135.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:10,10:0.50:20
chr3	101085683	rs58636547	TAAAAA	T	545.73	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:12,15:0.56:27
chr3	101136402	rs9859077	G	C	1597.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:72,67:0.48:139
chr3	101177848	rs6809436	T	G	8610.77	.	AC=1;AF=0.500;AN=2;DB;DP=870;set=Intersection	GT:AD:AF:DP	0/1:437,424:0.49:861
chr3	101212855	rs6791803	T	C	793.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:40,40:0.50:80
chr3	101232093	.	C	A	481	.	AC=1;AF=0.500;AN=2;BRF=0.43;FR=0.5000;HP=2;HapScore=2;MGOF=7;MMLQ=25;MQ=57.02;NF=3;NR=20;PP=481;QD=22.4248353281;SC=AAAAAAAGCCCGCAAAGTGCG;SbPval=0.76;Source=Platypus;TC=35;TCF=6;TCR=29;TR=23;WE=101232101;WS=101232083;set=Platypus	GT:AD:AF:DP	1/0:12,23:0.66:35
chr3	101299031	rs144008875	CAAT	C	986.73	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:30,27:0.47:57
chr3	101304158	rs142708768	C	T	161.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:12,9:0.43:21
chr3	101304414	rs3804776	G	T	717.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:41,35:0.46:76
chr3	101308846	rs6441614	G	A	237.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr3	101370529	rs56200814	TA	T	590.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.304;ClippingRankSum=0.000;DB;DP=265;ExcessHet=3.0103;FS=1.402;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.01;ReadPosRankSum=0.748;SOR=0.843;set=HC	GT:AD:AF:DP	0/1:116,80:0.41:196
chr3	101389864	rs9837549	T	C	8131.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr3	101401248	rs41273611	G	C	1986.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:81,90:0.53:171
chr3	101404813	rs2303473	A	G	1568.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:100,81:0.45:181
chr3	101443461	rs994573	T	C	2420.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr3	101484335	rs2625282	G	A	4237.77	.	AC=1;AF=0.500;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	0/1:208,198:0.49:406
chr3	101504624	rs2625289	A	C	584.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:20,22:0.52:42
chr3	101520971	.	T	TA	53.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.744;ClippingRankSum=0.000;DP=73;ExcessHet=3.0103;FS=2.509;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.96;ReadPosRankSum=3.487;SOR=0.202;set=HC	GT:AD:AF:DP	0/1:44,12:0.21:56
chr3	101540387	rs35598292	T	G	4793.77	.	AC=1;AF=0.500;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	0/1:243,214:0.47:457
chr3	101572822	rs2925334	C	A	655.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:31,26:0.46:57
chr3	101575877	.	A	AT	411.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.957;ClippingRankSum=0.000;DP=237;ExcessHet=3.0103;FS=8.324;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.85;ReadPosRankSum=1.331;SOR=1.385;set=HC	GT:AD:AF:DP	0/1:157,65:0.29:222
chr3	101575882	rs595788	T	C	1125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.417;ClippingRankSum=0.000;DB;DP=239;ExcessHet=3.0103;FS=0.505;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=-0.821;QD=4.83;ReadPosRankSum=-0.122;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:138,95:0.41:233
chr3	101576029	rs3217713	T	TACTTTTAGAAAGCTTTAATAACC	8911.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.218;ClippingRankSum=0.000;DB;DP=574;ExcessHet=3.0103;FS=0.547;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=1.356;QD=16.32;ReadPosRankSum=0.875;SOR=0.781;set=HC	GT:AD:AF:DP	0/1:353,193:0.35:546
chr3	105238890	rs11291806	CT	C	10658.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.478;ClippingRankSum=0.000;DB;DP=563;ExcessHet=3.0103;FS=1.879;MLEAC=2;MLEAF=1.000;MQ=60.29;MQRankSum=0.650;QD=19.67;ReadPosRankSum=0.926;SOR=0.567;set=HC	GT:AD:AF:DP	1/1:14,528:0.97:542
chr3	105238901	rs2291376	T	C	16252.77	.	AC=2;AF=1.00;AN=2;DB;DP=633;set=Intersection	GT:AD:AF:DP	1/1:6,617:0.99:623
chr3	105260518	rs579565	G	A	13413.77	.	AC=2;AF=1.00;AN=2;DB;DP=510;set=Intersection	GT:AD:AF:DP	1/1:0,506:1.00:506
chr3	105260596	rs599278	T	C	9010.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:0,333:1.00:333
chr3	105270850	rs35383009	A	AT	69.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.711;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.81;ReadPosRankSum=1.434;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:5,7:0.58:12
chr3	105389153	rs11713094	A	G	2948.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:138,145:0.51:283
chr3	105404031	rs16851440	T	C	846.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:11,33:0.75:44
chr3	105412286	rs10635036	C	CTT	2739.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr3	105412477	.	A	G	222.77	.	AC=1;AF=0.500;AN=2;DP=29;set=Intersection	GT:AD:AF:DP	0/1:18,11:0.38:29
chr3	105422844	rs2305037	C	T	1583.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:82,79:0.49:161
chr3	105438806	rs7624400	G	A	3041.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr3	105438957	rs2305036	T	G	1723.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:99,86:0.46:185
chr3	105439026	rs2305035	G	A	1165.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:61,57:0.48:118
chr3	105452751	rs1992520	C	T	1811.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr3	105453034	rs6768096	A	G	2989.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr3	105455955	rs2289746	T	C	710.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:37,36:0.49:73
chr3	105468330	rs1443098	C	T	392.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr3	105495432	rs9809911	G	T	5557.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr3	105586538	rs2221379	G	A	1624.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr3	105588069	rs11711088	G	A	2036.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr3	107096547	rs709564	G	A	5823.77	.	AC=1;AF=0.500;AN=2;DB;DP=599;set=Intersection	GT:AD:AF:DP	0/1:315,279:0.47:594
chr3	107447857	rs3761963	T	A	7093.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr3	107451907	rs4855764	C	T	9513.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	1/1:0,348:1.00:348
chr3	107463456	rs3838316	TG	T	8568.73	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:2,221:0.99:223
chr3	107491758	rs34531902	TAGA	T	1747.73	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:49,46:0.48:95
chr3	107497112	rs115856500	C	T	1319.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:81,54:0.40:135
chr3	107519843	rs1532325	T	C	4237.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr3	107524112	rs3840144	G	GT	2906.73	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr3	107646728	rs4855779	G	A	1612.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr3	107646807	rs9837335	G	T	2216.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:107,96:0.47:203
chr3	107646895	rs9861097	T	C	16545.77	.	AC=2;AF=1.00;AN=2;DB;DP=610;set=Intersection	GT:AD:AF:DP	1/1:0,607:1.00:607
chr3	107647001	rs35976982	CA	C	10544.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.537;ClippingRankSum=0.000;DB;DP=600;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.18;MQRankSum=0.673;QD=19.17;ReadPosRankSum=2.159;SOR=0.779;set=HC	GT:AD:AF:DP	1/1:23,527:0.96:550
chr3	107776511	rs709436	C	T	659.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr3	107777051	rs3762679	C	A	575.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:34,25:0.42:59
chr3	107789790	rs56063635	T	A	209.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr3	107809798	rs445541	C	T	765.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr3	107882643	rs327168	G	A	807.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr3	107884211	rs327167	T	C	2522.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr3	107910327	.	CT	C	134.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.924;ClippingRankSum=0.000;DP=249;ExcessHet=3.0103;FS=1.488;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.56;ReadPosRankSum=1.658;SOR=0.852;set=HC	GT:AD:AF:DP	0/1:187,53:0.22:240
chr3	107937231	rs1289761	T	C	1478.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr3	107937286	rs1289760	A	G	4338.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr3	107937544	rs2305447	C	T	437.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:20,20:0.50:40
chr3	107937571	rs1289759	G	A	897.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr3	107937602	rs1289758	C	T	556.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr3	107938240	rs1289754	G	C	4145.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr3	108070556	rs9846218	T	C	3420.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr3	108072243	rs6766283	C	T	2179.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr3	108072298	rs6779254	T	C	3788.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr3	108072704	rs6779650	T	C	2475.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr3	108081175	.	CT	C	60.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.898;ClippingRankSum=0.000;DP=370;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.17;ReadPosRankSum=-0.930;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:304,58:0.16:362
chr3	108081247	rs16854512	G	A	4880.77	.	AC=1;AF=0.500;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	0/1:218,240:0.52:458
chr3	108096098	rs1463426	C	G	9207.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:0,336:1.00:336
chr3	108096227	rs1463425	G	C	8688.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr3	108102584	rs141454667	A	AAC	1130.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.840;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.81;MQRankSum=2.372;QD=22.17;ReadPosRankSum=-0.480;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:8,43:0.84:51
chr3	108102586	rs7426463	T	A	1377.80	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.151;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=5.036;MLEAC=2;MLEAF=1.000;MQ=59.81;MQRankSum=3.429;QD=28.12;ReadPosRankSum=0.000;SOR=0.729;set=HC	GT:AD:AF:DP	1/1:4,45:0.92:49
chr3	108107704	rs1463431	C	T	2453.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr3	108135606	rs56933265	TAA	T	7484.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr3	108135609	rs116262927	A	T	7493.77	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=0.876;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=5.453;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=43.57;ReadPosRankSum=1.723;SOR=1.895;set=HC	GT:AD:AF:DP	1/1:1,171:0.99:172
chr3	108140148	rs4593038	A	G	1867.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr3	108147295	rs1350235	C	A	1612.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr3	108156633	rs113832514	A	AAAAG	3622.73	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr3	108158574	rs3996040	C	T	6830.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr3	108172817	rs6437783	C	T	6377.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr3	108174537	rs3957557	T	C	6457.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:2,247:0.99:249
chr3	108179219	rs11303627	CA	C	2560.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.130;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.367;QD=14.55;ReadPosRankSum=0.591;SOR=0.748;set=HC	GT:AD:AF:DP	1/1:15,161:0.91:176
chr3	108188993	rs9868484	G	A	9468.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	1/1:0,348:1.00:348
chr3	108189627	rs4299484	C	T	13731.77	.	AC=2;AF=1.00;AN=2;DB;DP=527;set=Intersection	GT:AD:AF:DP	1/1:2,514:1.00:516
chr3	108189750	rs12495639	C	T	4784.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr3	108211869	rs140450152	A	AAAGG	3426.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.132;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=4.520;MLEAC=2;MLEAF=1.000;MQ=60.09;MQRankSum=0.197;QD=29.04;ReadPosRankSum=0.417;SOR=2.894;set=HC	GT:AD:AF:DP	1/1:2,116:0.98:118
chr3	108214537	rs2603140	T	G	1736.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr3	108216807	rs17539094	G	A	7180.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr3	108224685	.	CA	C	774.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.039;ClippingRankSum=0.000;DP=444;ExcessHet=3.0103;FS=1.063;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.21;ReadPosRankSum=0.257;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:234,116:0.33:350
chr3	108229171	rs2249886	T	C	1366.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr3	108276264	.	C	CA	176.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.579;ClippingRankSum=0.000;DP=205;ExcessHet=3.0103;FS=0.848;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=0.000;QD=1.06;ReadPosRankSum=-0.370;SOR=0.522;set=HC	GT:AD:AF:DP	0/1:133,34:0.20:167
chr3	108285518	rs2603121	T	A	977.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr3	108327050	rs10684119	T	TAAC	1704.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.26;QD=43.71;SOR=1.730;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr3	108344636	rs5851600	TAA	TA,T	481.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=30;set=Intersection	GT:AF:DP	1/1:0.97:29
chr3	108347811	rs969256	C	A	2848.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr3	108355423	rs10711079	AT	A	1379.73	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr3	108355575	rs10711080	CT	C	1457.73	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:22,101:0.82:123
chr3	108356501	rs143129590	T	TTTAAGGTAGTA	275.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr3	108369954	rs2969900	T	C	719.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr3	108373022	rs2969901	G	A	10460.77	.	AC=2;AF=1.00;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	1/1:0,380:1.00:380
chr3	108403086	rs9856097	T	C	9785.77	.	AC=2;AF=1.00;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	1/1:0,367:1.00:367
chr3	108474524	rs9878093	A	C	5640.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr3	108475993	rs5851607	G	GGGGGATTA	4588.73	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr3	108541761	rs9879812	T	C	2775.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr3	108541931	rs5851618	CAT	C	817.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr3	108565815	rs2593831	T	C	1712.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr3	108634973	rs10933973	C	A	8149.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr3	108698627	rs2953338	G	A	2542.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr3	108703422	rs1868195	A	G	933.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr3	108705715	rs11433147	A	AT	769.73	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:9,39:0.81:48
chr3	108719470	rs3762698	C	G	4357.77	.	AC=1;AF=0.500;AN=2;DB;DP=499;set=Intersection	GT:AD:AF:DP	0/1:278,214:0.43:492
chr3	108724279	rs2290058	T	A	430.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:22,17:0.44:39
chr3	108725694	rs2044586	C	T	1221.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr3	108725759	rs2044587	C	T	1479.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:78,68:0.47:146
chr3	108725848	rs5851630	ATTGC	A	6509.73	.	AC=1;AF=0.500;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	0/1:192,170:0.47:362
chr3	108725862	rs2044589	T	C	6573.77	.	AC=1;AF=0.500;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	0/1:211,176:0.45:387
chr3	108725984	rs2044590	G	C	2549.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:169,124:0.42:293
chr3	108746836	rs17665933	T	C	450.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:21,18:0.46:39
chr3	108754146	rs9821261	G	A	975.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:38,47:0.55:85
chr3	108754238	rs4855576	A	T	4291.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr3	108754260	rs3762696	A	G	1600.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:76,81:0.52:157
chr3	108754320	rs11438791	T	TAA	1674.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.946;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=2.742;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.17;ReadPosRankSum=2.401;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:2,62:0.97:64
chr3	108754346	rs35736028	CA	C	264.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.593;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=7.454;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.97;ReadPosRankSum=-0.409;SOR=2.737;set=HC	GT:AD:AF:DP	0/1:19,19:0.50:38
chr3	108773772	rs7653625	A	G	373.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:23,17:0.42:40
chr3	108776343	rs1031252	C	T	5844.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr3	108780831	rs7653651	G	A	837.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:89,48:0.35:137
chr3	108782160	rs895738	T	C	438.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:19,21:0.53:40
chr3	108788461	rs2305238	T	C	1440.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:65,70:0.52:135
chr3	108812154	rs9821382	A	G	1366.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:36,48:0.57:84
chr3	108829765	rs6437822	C	T	336.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr3	108855774	rs1356071	A	G	2296.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr3	108855801	rs1356072	T	A	1817.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr3	108867128	rs4855697	A	G	9004.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:2,332:0.99:334
chr3	109019435	rs9865540	G	A	1452.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr3	109027157	rs7611135	C	T	11158.77	.	AC=2;AF=1.00;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	1/1:0,414:1.00:414
chr3	109027820	rs7611871	G	A	1217.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr3	109047025	.	A	G	494.77	.	AC=1;AF=0.500;AN=2;DP=60;set=Intersection	GT:AD:AF:DP	0/1:30,25:0.45:55
chr3	109047928	rs1163439	C	T	14546.77	.	AC=2;AF=1.00;AN=2;DB;DP=552;set=Intersection	GT:AD:AF:DP	1/1:0,547:1.00:547
chr3	109049147	rs376934388	CAAAAAAAAAAAAAAAAAA	C	1295.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.65;QD=39.26;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:1,32:0.97:33
chr3	109049180	rs5851663	GA	G	1541.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.224;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=3.227;MLEAC=2;MLEAF=1.000;MQ=59.77;MQRankSum=-0.109;QD=29.09;ReadPosRankSum=0.705;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:2,51:0.96:53
chr3	109049720	rs112463757	C	CTAAGGGT	861.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr3	109050980	rs1163438	T	C	811.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr3	109052935	rs1351737	C	T	1628.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr3	109178707	rs769534	C	G	4029.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.00;SOR=0.759;set=HC	GT:AD:AF:DP	1/1:0,155:1.00:155
chr3	109178758	rs769533	C	T	3298.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr3	109321666	rs57113096	TG	T	285.75	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr3	110611137	rs1381838	G	A	8800.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:0,325:1.00:325
chr3	110791113	rs4682228	A	G	2530.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr3	110792906	rs2399372	G	A	852.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr3	110793050	rs2399373	G	A	5793.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:2,225:0.99:227
chr3	110796191	.	T	TAAAAAAAAAAAA	64.70	.	AC=2;AF=1.00;AN=2;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.59;QD=21.57;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr3	110830746	rs113902748	ATGTGTGTG	A,ATG	935.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.42;QD=37.43;SOR=4.174;set=HC	GT:AD:AF:DP	1/2:0,18,7:0.72,0.28:25
chr3	110866437	rs62273799	G	A	4682.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr3	111260975	rs2276873	C	T	2430.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:91,109:0.55:200
chr3	111261242	rs3832264	G	GCTGCTGAAATTGATCACCA	2295.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.701;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=4.226;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=1.914;QD=19.96;ReadPosRankSum=-0.216;SOR=1.221;set=HC	GT:AD:AF:DP	0/1:53,62:0.54:115
chr3	111316886	rs3215207	C	CTTATG	930.73	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:27,25:0.48:52
chr3	111356083	rs1533270	G	C	4612.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr3	111368813	rs3733176	C	T	842.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:35,34:0.49:69
chr3	111451603	rs3821919	G	C	904.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:54,43:0.44:97
chr3	111564839	rs937557	A	G	3486.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr3	111604541	rs1283007	G	C	4596.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr3	111632132	rs149527015	ACCCACTGACCT	A	2300.73	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:112,64:0.36:176
chr3	111632614	rs1282947	A	G	2980.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:134,128:0.49:262
chr3	111637904	rs2399399	G	A	6517.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr3	111638132	rs951660	A	C	829.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr3	111638952	rs6779756	C	T	1376.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr3	111639353	rs937551	G	T	903.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr3	111658486	rs712510	T	G	6048.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr3	111658514	rs2272289	A	G	1701.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:56,76:0.58:132
chr3	111659377	rs698358	T	C	8597.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr3	111659609	rs3835170	A	AT	286.73	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:17,16:0.48:33
chr3	111677526	rs11713044	G	A	3541.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:149,174:0.54:323
chr3	111685328	rs774859	T	C	2185.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr3	111685347	rs67645066	CAT	C	1485.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.269;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.96;ReadPosRankSum=-1.505;SOR=0.855;set=HC	GT:AD:AF:DP	0/1:25,37:0.60:62
chr3	111685348	rs774858	A	G	702.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:42,23:0.35:65
chr3	111685365	.	T	G	1642.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.747;ClippingRankSum=0.000;DP=83;ExcessHet=3.0103;FS=2.128;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.06;ReadPosRankSum=-1.940;SOR=0.997;set=HC	GT:AD:AF:DP	0/1:35,43:0.55:78
chr3	111685366	rs199885387	GTGTCT	G	1628.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.891;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=2.047;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.86;ReadPosRankSum=-2.020;SOR=0.986;set=HC	GT:AD:AF:DP	0/1:37,45:0.55:82
chr3	111685374	.	G	GGTGTGT	881.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.775;ClippingRankSum=0.000;DP=89;ExcessHet=3.0103;FS=1.095;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.62;ReadPosRankSum=2.594;SOR=0.489;set=HC	GT:AD:AF:DP	0/1:50,33:0.40:83
chr3	111685397	rs1283002	A	G	672.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:63,37:0.37:100
chr3	111685572	rs774857	C	T	2661.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:160,129:0.45:289
chr3	111685607	rs774856	G	A	1619.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:87,78:0.47:165
chr3	111685659	rs80296143	A	G	925.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:35,37:0.51:72
chr3	111686738	rs799570	G	A	1786.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr3	111688578	rs774854	C	T	5786.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:1,211:1.00:212
chr3	111692829	rs774852	C	T	376.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr3	111705275	rs150902974	G	GTTTGT	4303.73	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:2,99:0.98:101
chr3	111705727	rs73232038	A	G	918.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:34,41:0.55:75
chr3	111710201	rs71773737	AT	A	4479.73	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr3	111719493	rs774764	A	G	2056.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr3	111719786	rs2292583	A	T	1321.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:57,59:0.51:116
chr3	111730546	rs3749310	G	A	445.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:43,25:0.37:68
chr3	111730591	rs3749311	G	T	1452.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:67,68:0.50:135
chr3	111753527	rs73216052	C	T	1350.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:36,55:0.60:91
chr3	111757212	rs7625876	A	G	489.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:25,21:0.46:46
chr3	111760771	rs774774	A	G	13988.77	.	AC=2;AF=1.00;AN=2;DB;DP=508;set=Intersection	GT:AD:AF:DP	1/1:0,504:1.00:504
chr3	111763085	rs4682350	C	T	5051.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr3	111763278	rs7650559	G	T	6848.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr3	111765834	rs1561911	G	A	18955.77	.	AC=2;AF=1.00;AN=2;DB;DP=730;set=Intersection	GT:AD:AF:DP	1/1:0,713:1.00:713
chr3	111766124	rs9811691	G	T	1199.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:63,49:0.44:112
chr3	111766215	rs1318554	A	G	13997.77	.	AC=2;AF=1.00;AN=2;DB;DP=529;set=Intersection	GT:AD:AF:DP	1/1:0,519:1.00:519
chr3	111766559	rs1688304	T	G	4576.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr3	111785208	rs11715561	G	A	2261.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:136,115:0.46:251
chr3	111793316	rs191454	G	T	1483.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:73,68:0.48:141
chr3	111794365	rs1907639	A	G	1061.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:30,48:0.62:78
chr3	111799845	rs340151	A	T	12750.77	.	AC=2;AF=1.00;AN=2;DB;DP=495;set=Intersection	GT:AD:AF:DP	1/1:0,489:1.00:489
chr3	111805438	rs3833596	G	GT	2155.73	.	AC=1;AF=0.500;AN=2;DB;DP=162;MQ=60.07;set=Intersection	GT:AD:AF:DP	0/1:84,73:0.46:157
chr3	111828384	rs5851818	G	GT	3479.73	.	AC=1;AF=0.500;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	0/1:167,154:0.48:321
chr3	111828423	rs340167	G	A	7144.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr3	111828476	rs2120095	A	G	1375.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:104,75:0.42:179
chr3	111831723	.	TA	T	70.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.668;ClippingRankSum=0.000;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.36;ReadPosRankSum=-0.681;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:38,14:0.27:52
chr3	111832120	rs340165	A	G	721.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:24,29:0.55:53
chr3	111843883	rs923745	T	C	716.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:38,32:0.46:70
chr3	111866148	rs56364691	T	C	980.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:48,44:0.48:92
chr3	111873902	rs11369523	T	TA	694.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.669;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=5.351;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.011;QD=6.43;ReadPosRankSum=-0.706;SOR=0.927;set=HC	GT:AD:AF:DP	0/1:57,51:0.47:108
chr3	111873996	rs7622733	C	T	991.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:40,47:0.54:87
chr3	111885896	rs4682084	A	G	490.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr3	111918215	rs28516377	CA	TG	2252.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;JOINED;set=Intersection	GT:AD:AF:DP	0/1:106,62:0.37:168
chr3	111921010	rs9821935	A	G	124.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:28,10:0.26:38
chr3	111921116	rs9288938	C	A	511.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:47,30:0.39:77
chr3	111921225	rs6781844	G	T	574.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:27,29:0.52:56
chr3	111923047	rs4422273	G	A	180.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:10,8:0.44:18
chr3	111923123	rs4434123	G	A	874.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:42,40:0.49:82
chr3	111926950	rs17505536	G	A	698.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:40,34:0.46:74
chr3	111936118	rs11921877	A	G	214.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr3	111936200	rs1388857	C	A	699.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:37,31:0.46:68
chr3	111936207	rs6779306	T	A	876.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:34,42:0.55:76
chr3	111950367	rs55735606	C	G	956.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:38,42:0.53:80
chr3	111962851	rs6768523	T	C	1650.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:48,75:0.61:123
chr3	111981696	rs5851826	CA	C	622.73	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:29,15:0.34:44
chr3	111981704	rs5003791	C	T	701.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:36,23:0.39:59
chr3	111981849	rs9860819	C	T	6695.77	.	AC=1;AF=0.500;AN=2;DB;DP=696;set=Intersection	GT:AD:AF:DP	0/1:355,331:0.48:686
chr3	111981878	rs9809384	T	C	7324.77	.	AC=1;AF=0.500;AN=2;DB;DP=779;set=Intersection	GT:AD:AF:DP	0/1:402,369:0.48:771
chr3	111981924	rs9809404	T	C	6822.77	.	AC=1;AF=0.500;AN=2;DB;DP=658;set=Intersection	GT:AD:AF:DP	0/1:326,327:0.50:653
chr3	111983157	rs62276974	G	A	894.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:56,48:0.46:104
chr3	111983197	rs6788397	C	T	1061.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:33,50:0.60:83
chr3	111984970	rs4682098	T	C	282.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr3	111985107	rs9872691	T	C	760.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:51,40:0.44:91
chr3	111993691	rs11324928	TC	T	71.73	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:3,4:0.57:7
chr3	111993716	rs6805112	G	A	46.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.242;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.85;ReadPosRankSum=0.545;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chr3	111996554	rs9828502	T	C	2974.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:130,137:0.51:267
chr3	111996730	rs9809174	G	A	960.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:43,41:0.49:84
chr3	111997510	rs12632408	T	A	417.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.473;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.08;ReadPosRankSum=-2.594;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:26,20:0.43:46
chr3	111997791	rs13314977	G	A	190.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:13,10:0.43:23
chr3	111999736	rs147052896	A	ACTTGTTTTCT	822.73	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:21,22:0.51:43
chr3	112052173	rs9883527	T	C	2763.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr3	112059768	rs1131199	C	G	2097.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:86,95:0.52:181
chr3	112063705	rs3817425	T	C	559.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:24,24:0.50:48
chr3	112064263	rs11921546	T	A	1072.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.977;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.82;ReadPosRankSum=-0.324;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:18,29:0.62:47
chr3	112064266	rs60497880	T	C	1075.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.392;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.61;ReadPosRankSum=0.449;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:17,25:0.60:42
chr3	112066562	rs1050572	G	A	4074.77	.	AC=1;AF=0.500;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	0/1:211,198:0.48:409
chr3	112068440	rs60377655	C	T	289.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:13,12:0.48:25
chr3	112068494	rs150687436	T	TCTATTGCTTTATCA	1674.73	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:31,32:0.51:63
chr3	112068503	rs73227426	C	T	925.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:51,40:0.44:91
chr3	112068517	rs57404826	C	T	1284.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:50,59:0.54:109
chr3	112184927	rs2171513	A	G	7197.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr3	112185025	rs9288952	G	A	14660.77	.	AC=2;AF=1.00;AN=2;DB;DP=548;set=Intersection	GT:AD:AF:DP	1/1:0,541:1.00:541
chr3	112188474	.	A	AGTACATAGAATATG	322.75	.	AC=2;AF=1.00;AN=2;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=80.69;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr3	112188478	.	A	ATAC	357.74	.	AC=2;AF=1.00;AN=2;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.19;QD=39.75;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr3	112190137	rs2931761	G	T	11218.77	.	AC=2;AF=1.00;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	1/1:0,416:1.00:416
chr3	112218319	.	T	TA	64.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.054;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.23;ReadPosRankSum=2.785;SOR=0.536;set=HC	GT:AD:AF:DP	0/1:21,8:0.28:29
chr3	112253058	rs35560667	C	CA	4288.73	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:44,230:0.84:274
chr3	112253193	rs11381118	C	CA	2430.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.508;ClippingRankSum=0.000;DB;DP=337;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=9.50;ReadPosRankSum=2.247;SOR=0.649;set=HC	GT:AD:AF:DP	0/1:86,170:0.66:256
chr3	112253233	rs138522909	AAAG	A	5917.73	.	AC=2;AF=1.00;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;QD=42.88;SOR=1.059;set=HC	GT:AD:AF:DP	1/1:0,138:1.00:138
chr3	112267523	rs9809247	G	A	8819.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr3	112280218	rs2279532	G	A	3247.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr3	112289320	rs9869455	G	A	1280.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr3	112289372	rs9869579	G	A	2489.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr3	112289576	.	AT	A	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.555;ClippingRankSum=0.000;DP=39;ExcessHet=3.0103;FS=10.414;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.49;ReadPosRankSum=0.184;SOR=0.035;set=HC	GT:AD:AF:DP	0/1:20,8:0.29:28
chr3	112301458	rs5851844	C	CCTTAGTAAT	5436.73	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr3	112329033	.	G	GA	541.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.100;ClippingRankSum=0.000;DP=361;ExcessHet=3.0103;FS=1.124;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=4.117;QD=1.73;ReadPosRankSum=-0.252;SOR=0.592;set=HC	GT:AD:AF:DP	0/1:243,70:0.22:313
chr3	112338027	rs13084615	T	C	1870.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr3	112415652	rs10934180	G	C	1668.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr3	112538571	rs35585943	CT	C	1291.73	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:3,66:0.96:69
chr3	112545910	rs58161637	GT	G	3586.73	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr3	112693753	rs62263759	A	T	3196.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr3	112709828	rs2272393	C	G	1755.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr3	112710242	rs2248029	T	C	17867.77	.	AC=2;AF=1.00;AN=2;DB;DP=663;set=Intersection	GT:AD:AF:DP	1/1:2,651:1.00:653
chr3	112719791	rs200301737	CA	C	205.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.074;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=4.911;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.31;ReadPosRankSum=0.697;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:57,32:0.36:89
chr3	112727184	rs2306857	A	T	15596.77	.	AC=2;AF=1.00;AN=2;DB;DP=584;set=Intersection	GT:AD:AF:DP	1/1:0,574:1.00:574
chr3	112732309	.	GTT	G	912.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.707;ClippingRankSum=0.000;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=0.619;QD=14.96;ReadPosRankSum=0.086;SOR=0.848;set=HC	GT:AD:AF:DP	0/1:22,39:0.64:61
chr3	112738318	rs2293560	C	T	4602.77	.	AC=1;AF=0.500;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	0/1:192,214:0.53:406
chr3	112738625	rs7633507	C	T	1210.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr3	112935138	rs4682130	C	G	10714.77	.	AC=2;AF=1.00;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	1/1:0,400:1.00:400
chr3	112993367	rs13094203	G	A	5286.77	.	AC=1;AF=0.500;AN=2;DB;DP=524;set=Intersection	GT:AD:AF:DP	0/1:245,261:0.52:506
chr3	112997554	rs775228	A	G	5272.77	.	AC=1;AF=0.500;AN=2;DB;DP=586;set=Intersection	GT:AD:AF:DP	0/1:321,260:0.45:581
chr3	112998268	rs2650100	G	A	3791.77	.	AC=1;AF=0.500;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	0/1:171,186:0.52:357
chr3	112999611	rs775229	A	G	2528.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:106,112:0.51:218
chr3	113004155	rs41271355	G	A	1095.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:38,44:0.54:82
chr3	113005753	.	T	TA	535.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.882;ClippingRankSum=0.000;DP=120;ExcessHet=3.0103;FS=1.800;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=1.767;QD=5.58;ReadPosRankSum=0.751;SOR=0.479;set=HC	GT:AD:AF:DP	0/1:53,43:0.45:96
chr3	113005754	rs5022662	A	T	853.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.449;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=8.974;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=-1.173;QD=7.62;ReadPosRankSum=0.746;SOR=1.109;set=HC	GT:AD:AF:DP	0/1:66,46:0.41:112
chr3	113010303	rs17321330	G	A	1405.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr3	113010466	rs2291905	T	C	3496.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr3	113012797	rs810209	G	A	6654.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr3	113012974	rs775217	A	G	3960.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr3	113013848	rs11398178	A	AT	1774.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr3	113015436	rs808949	G	C	5241.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr3	113015553	rs808950	A	C	26176.77	.	AC=2;AF=1.00;AN=2;DB;DP=979;set=Intersection	GT:AD:AF:DP	1/1:0,978:1.00:978
chr3	113022870	rs4682484	T	C	8875.77	.	AC=2;AF=1.00;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	1/1:0,343:1.00:343
chr3	113022996	rs2270782	G	A	2790.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr3	113027214	rs775231	A	C	1679.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr3	113165288	rs4619761	A	T	506.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:18,20:0.53:38
chr3	113169372	.	G	GA	279.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.183;ClippingRankSum=0.000;DP=246;ExcessHet=3.0103;FS=12.304;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.34;ReadPosRankSum=0.043;SOR=0.605;set=HC	GT:AD:AF:DP	0/1:163,45:0.22:208
chr3	113169426	.	A	AT	126.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.354;ClippingRankSum=0.000;DP=75;ExcessHet=3.0103;FS=1.427;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.76;ReadPosRankSum=-0.182;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:32,14:0.30:46
chr3	113285185	rs71633326	TTG	T	204.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.456;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=1.757;QD=4.36;ReadPosRankSum=-1.222;SOR=0.871;set=HC	GT:AD:AF:DP	0/1:35,12:0.26:47
chr3	113313947	rs2614193	C	T	316.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:22,16:0.42:38
chr3	113334752	rs2271498	A	G	428.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:20,21:0.51:41
chr3	113373930	rs930818	A	G	14491.77	.	AC=2;AF=1.00;AN=2;DB;DP=546;set=Intersection	GT:AD:AF:DP	1/1:0,535:1.00:535
chr3	113376110	rs112313093	TTGCTGCTGC	T,TTGCTGC	7174.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=312;set=Intersection	GT:AF:DP	1/2:0.52,0.44:194
chr3	113377361	rs9813630	A	G	2023.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:105,98:0.48:203
chr3	113379865	rs9866806	G	C	4056.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:171,180:0.51:351
chr3	113380332	rs3796254	T	C	261.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:9,14:0.61:23
chr3	113442198	rs3732793	C	A	552.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:32,26:0.45:58
chr3	113464859	rs1048892	A	G	6345.77	.	AC=1;AF=0.500;AN=2;DB;DP=573;set=Intersection	GT:AD:AF:DP	0/1:280,291:0.51:571
chr3	113497507	rs12636577	A	G	296.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:8,14:0.64:22
chr3	113499458	rs1430944	G	A	1988.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr3	113499733	rs2305545	A	G	910.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:22,35:0.61:57
chr3	113503354	rs2305546	A	G	1151.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:40,47:0.54:87
chr3	113508499	rs11385012	T	TA	326.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.516;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=2.702;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.61;ReadPosRankSum=-0.235;SOR=0.138;set=HC	GT:AD:AF:DP	0/1:12,22:0.65:34
chr3	113522544	rs13321446	T	C	1609.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:56,73:0.57:129
chr3	113557690	rs9990079	G	A	4648.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;MQ=60.35;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr3	113557787	rs66781755	AGCC	A	20211.73	.	AC=2;AF=1.00;AN=2;DB;DP=469;set=Intersection	GT:AD:AF:DP	1/1:0,458:1.00:458
chr3	113594377	rs13079383	A	G	13365.77	.	AC=2;AF=1.00;AN=2;DB;DP=503;set=Intersection	GT:AD:AF:DP	1/1:0,499:1.00:499
chr3	113595156	rs2712350	C	G	2704.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr3	113601761	rs62265406	T	A	368.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:15,16:0.52:31
chr3	113609403	rs9862440	G	A	977.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:73,51:0.41:124
chr3	113619872	rs2632244	C	T	4801.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:2,190:0.99:192
chr3	113631865	rs16861409	G	A	1905.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:62,83:0.57:145
chr3	113631884	rs2712341	A	C	1813.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:112,87:0.44:199
chr3	113632108	rs2712340	G	A	852.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:30,38:0.56:68
chr3	113655096	.	G	GT	98.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.079;ClippingRankSum=0.000;DP=121;ExcessHet=3.0103;FS=2.324;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.86;ReadPosRankSum=-0.019;SOR=0.363;set=HC	GT:AD:AF:DP	0/1:94,21:0.18:115
chr3	113673125	rs11921691	A	G	5733.77	.	AC=1;AF=0.500;AN=2;DB;DP=488;set=Intersection	GT:AD:AF:DP	0/1:233,253:0.52:486
chr3	113679589	rs12629415	C	A	2999.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:129,143:0.53:272
chr3	113679725	rs3732785	C	T	1750.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:78,83:0.52:161
chr3	113720517	rs6784095	T	A	9485.77	.	AC=1;AF=0.500;AN=2;DB;DP=943;set=Intersection	GT:AD:AF:DP	0/1:464,466:0.50:930
chr3	113720624	rs6438178	C	T	8621.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chr3	113785149	rs3830297	ATATGT	A	1234.73	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:44,34:0.44:78
chr3	113858350	rs2251177	C	T	1450.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr3	113890815	rs6280	C	T	959.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:61,47:0.44:108
chr3	113955055	.	G	GA	242.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.430;ClippingRankSum=0.000;DP=262;ExcessHet=3.0103;FS=1.334;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=3.012;QD=0.99;ReadPosRankSum=-0.133;SOR=0.838;set=HC	GT:AD:AF:DP	0/1:194,50:0.20:244
chr3	113955753	rs146464395	C	T	4354.77	.	AC=1;AF=0.500;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	0/1:171,202:0.54:373
chr3	114027065	.	CGT	C	83.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.053;ClippingRankSum=0.000;DP=76;ExcessHet=3.0103;FS=4.179;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=2.450;QD=1.55;ReadPosRankSum=-1.925;SOR=0.181;set=HC	GT:AD:AF:DP	0/1:46,8:0.15:54
chr3	114832216	rs76869289	T	G	1091.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:62,50:0.45:112
chr3	115561556	rs2944401	A	G	420.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:27,19:0.41:46
chr3	115571364	rs3821560	C	T	3273.77	.	AC=1;AF=0.500;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	0/1:165,160:0.49:325
chr3	116163634	rs138580275	GAC	G	2185.73	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:41,95:0.70:136
chr3	118269774	rs9816586	A	G	9950.77	.	AC=2;AF=1.00;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	1/1:0,367:1.00:367
chr3	118269825	rs57227846	GT	G	2224.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.123;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=4.790;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=0.592;QD=14.45;ReadPosRankSum=1.405;SOR=1.288;set=HC	GT:AD:AF:DP	0/1:22,132:0.86:154
chr3	118649060	rs2903250	G	T	6445.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr3	118865332	rs11550908	A	G	6513.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr3	118865609	rs10934483	C	T	11135.77	.	AC=2;AF=1.00;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	1/1:1,404:1.00:405
chr3	118866515	rs9864127	C	T	3303.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr3	118867047	rs9289122	C	G	2544.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr3	118870025	rs11373158	A	AC	14484.73	.	AC=2;AF=1.00;AN=2;DB;DP=376;MQ=60.23;set=Intersection	GT:AD:AF:DP	1/1:0,372:1.00:372
chr3	118909159	rs9840317	A	G	3549.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr3	118909962	rs3796356	T	C	4098.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr3	118909987	rs3796357	C	T	3030.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr3	118931389	rs6784208	C	T	17255.77	.	AC=2;AF=1.00;AN=2;DB;DP=652;set=Intersection	GT:AD:AF:DP	1/1:0,640:1.00:640
chr3	118935278	rs34867718	C	T	574.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;MQ=61.56;set=Intersection	GT:AD:AF:DP	0/1:4,21:0.84:25
chr3	118935280	rs72331299	CACACACGCACAT	C	565.73	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:4,21:0.84:25
chr3	118945578	rs3752377	T	C	686.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr3	118945614	rs3752376	G	A	1146.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr3	118945796	rs3764779	G	C	10149.77	.	AC=2;AF=1.00;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	1/1:0,363:1.00:363
chr3	119112559	rs935616	A	G	1751.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr3	119118104	rs4688001	A	G	10925.77	.	AC=2;AF=1.00;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	1/1:0,397:1.00:397
chr3	119128398	rs2305249	G	A	4274.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr3	119133183	rs3732413	G	A	12251.77	.	AC=2;AF=1.00;AN=2;DB;DP=455;set=Intersection	GT:AD:AF:DP	1/1:0,441:1.00:441
chr3	119150836	rs1132200	C	T	4656.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr3	119170218	rs2178318	A	G	2132.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr3	119171280	rs1919586	C	G	13170.77	.	AC=2;AF=1.00;AN=2;DB;DP=490;set=Intersection	GT:AD:AF:DP	1/1:0,486:1.00:486
chr3	119188895	rs6438531	C	G	2955.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr3	119196334	rs3732419	G	T	2206.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr3	119197285	rs4688005	A	G	12028.77	.	AC=2;AF=1.00;AN=2;DB;DP=480;set=Intersection	GT:AD:AF:DP	1/1:6,470:0.99:476
chr3	119198873	rs4688007	G	A	16728.77	.	AC=2;AF=1.00;AN=2;DB;DP=638;set=Intersection	GT:AD:AF:DP	1/1:0,630:1.00:630
chr3	119204063	rs11382133	C	CA	154.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.650;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=2.199;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.74;ReadPosRankSum=1.479;SOR=0.184;set=HC	GT:AD:AF:DP	0/1:8,12:0.60:20
chr3	119222456	rs1131265	G	C	4358.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:2,165:0.99:167
chr3	119222585	rs11358423	CT	C	207.74	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:4,16:0.80:20
chr3	119348130	rs17281751	G	C	1887.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr3	119348345	.	A	ATATT,ATATTT	5970.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.258;ClippingRankSum=0.000;DP=383;ExcessHet=3.0103;FS=3.674;MLEAC=1,1;MLEAF=0.500,0.500;MQ=62.04;MQRankSum=0.351;QD=21.95;ReadPosRankSum=-1.014;SOR=0.367;set=HC	GT:AD:AF:DP	1/2:18,127,127:0.47,0.47:272
chr3	119361250	rs8007	A	G	1296.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr3	119367390	rs2688643	T	C	5114.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr3	119373301	rs2688630	G	A	792.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr3	119373315	rs2688629	T	C	870.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr3	119378872	rs1880040	G	A	15048.77	.	AC=2;AF=1.00;AN=2;DB;DP=556;set=Intersection	GT:AD:AF:DP	1/1:0,555:1.00:555
chr3	119378977	rs2873788	G	A	12185.77	.	AC=2;AF=1.00;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	1/1:2,425:1.00:427
chr3	119379186	rs4688023	C	T	12802.77	.	AC=2;AF=1.00;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	1/1:0,476:1.00:476
chr3	119394168	rs2293235	C	T	1003.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr3	119395870	.	CGG	C	590.73	.	AC=2;AF=1.00;AN=2;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.72;QD=34.75;SOR=5.784;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr3	119422204	rs7624672	T	C	1248.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr3	119426307	rs9848716	T	C	3831.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr3	119434527	rs6438544	G	C	6951.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr3	119501580	rs3841391	G	GC	3361.73	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr3	119501780	rs2472668	G	A	5127.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr3	119501798	rs2461831	T	A	4062.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr3	119529113	rs3732356	G	T	5176.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr3	119533733	rs6785049	G	A	2155.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr3	119533773	rs6797879	T	C	4001.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr3	119533910	rs4058490	T	C	11741.77	.	AC=2;AF=1.00;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	1/1:0,455:1.00:455
chr3	119595503	rs1719895	A	G	295.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr3	119886548	rs9858566	G	C	17516.77	.	AC=2;AF=1.00;AN=2;DB;DP=626;set=Intersection	GT:AD:AF:DP	1/1:0,619:1.00:619
chr3	119886776	rs902790	T	A	11356.77	.	AC=2;AF=1.00;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	1/1:0,417:1.00:417
chr3	119892121	rs13064815	C	G	1866.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr3	119900260	rs1488764	T	C	1268.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr3	119904125	rs902791	A	G	12606.77	.	AC=2;AF=1.00;AN=2;DB;DP=501;set=Intersection	GT:AD:AF:DP	1/1:4,494:0.99:498
chr3	119904315	rs902792	G	C	3291.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr3	119905641	rs2319542	G	A	5425.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr3	119911667	rs2319543	G	A	2352.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr3	119962322	rs1492272	G	C	2994.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr3	120067797	rs4676696	G	A	8867.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr3	120123953	rs1147701	T	A	3266.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr3	120130883	rs67083358	GACACACACACACACATACATGC	G	4272.73	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr3	120134720	rs3215378	A	AG	4220.73	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr3	120134883	rs2272515	T	C	12964.77	.	AC=2;AF=1.00;AN=2;DB;DP=479;set=Intersection	GT:AD:AF:DP	1/1:0,479:1.00:479
chr3	120169641	rs1147708	T	C	10034.77	.	AC=2;AF=1.00;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	1/1:0,383:1.00:383
chr3	120365010	rs1862942	G	A	849.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:38,39:0.51:77
chr3	120365251	rs189630271	T	C	1371.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:42,59:0.58:101
chr3	120369575	rs3817627	T	G	3967.77	.	AC=1;AF=0.500;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	0/1:250,196:0.44:446
chr3	120371369	rs1054095	G	A	2078.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:105,106:0.50:211
chr3	120371414	rs2551607	G	A	2132.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:127,108:0.46:235
chr3	120389243	rs1800722	T	C	1829.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:91,90:0.50:181
chr3	120389316	rs2255543	T	A	7589.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr3	120389491	rs17140269	A	G	436.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:17,17:0.50:34
chr3	120394521	rs17140396	T	C	533.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:21,23:0.52:44
chr3	120413158	rs7612975	G	A	2669.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr3	120760429	rs73187434	T	C	146.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:12,8:0.40:20
chr3	120833994	rs17195251	G	A	524.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:27,24:0.47:51
chr3	120876268	rs147873566	G	A	1077.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:59,45:0.43:104
chr3	120975997	rs150144558	A	AT	1116.73	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:55,61:0.53:116
chr3	121037225	.	T	TA	280.73	.	AC=1;AF=0.500;AN=2;DP=39;set=Intersection	GT:AD:AF:DP	0/1:20,18:0.47:38
chr3	121043228	rs73183143	G	A	1875.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:83,80:0.49:163
chr3	121100116	rs35624942	GT	G	2578.73	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:1,120:0.99:121
chr3	121137976	rs6782025	C	T	3311.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr3	121138015	rs6782033	C	T	2791.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr3	121154974	rs1381057	T	C	7904.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr3	121155198	rs2030531	C	T	2050.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:103,96:0.48:199
chr3	121186543	rs1381058	A	G	1809.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:92,81:0.47:173
chr3	121192350	rs3218647	G	A	2956.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:134,132:0.50:266
chr3	121195302	rs10591564	TACAC	T	2684.73	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:80,83:0.51:163
chr3	121202433	rs201304336	TA	T	188.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.010;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=0.000;QD=1.33;ReadPosRankSum=0.576;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:102,40:0.28:142
chr3	121203758	rs41554312	C	CA	450.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.408;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=4.051;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.451;QD=5.50;ReadPosRankSum=-1.520;SOR=1.765;set=HC	GT:AD:AF:DP	0/1:49,33:0.40:82
chr3	121208176	rs3218651	T	C	5495.77	.	AC=1;AF=0.500;AN=2;DB;DP=522;set=Intersection	GT:AD:AF:DP	0/1:245,262:0.52:507
chr3	121208833	rs3218649	G	C	3558.77	.	AC=1;AF=0.500;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	0/1:216,169:0.44:385
chr3	121212277	rs11351457	AT	A	2214.73	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:118,144:0.55:262
chr3	121228400	rs41544013	G	C	2269.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:95,101:0.52:196
chr3	121228833	rs3732406	A	C	2261.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:77,101:0.57:178
chr3	121238749	rs702018	G	A	9635.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:0,358:1.00:358
chr3	121238863	rs35766343	C	T	2498.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:120,120:0.50:240
chr3	121241058	rs13059229	C	G	1339.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:71,60:0.46:131
chr3	121258368	rs36065146	G	A	4791.77	.	AC=1;AF=0.500;AN=2;DB;DP=512;set=Intersection	GT:AD:AF:DP	0/1:272,235:0.46:507
chr3	121263720	rs702017	C	A	17324.77	.	AC=2;AF=1.00;AN=2;DB;DP=666;set=Intersection	GT:AD:AF:DP	1/1:0,651:1.00:651
chr3	121265176	rs3806614	G	A	1116.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:59,52:0.47:111
chr3	121265522	rs11714774	A	C	5886.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:1,214:1.00:215
chr3	121265599	.	T	TAA	125.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.522;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.19;ReadPosRankSum=3.111;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:15,15:0.50:30
chr3	121289829	rs9812322	G	T	3384.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:108,140:0.56:248
chr3	121304933	rs9813391	G	A	2614.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:178,134:0.43:312
chr3	121339354	rs7640859	T	C	4559.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr3	121345562	rs61753287	C	T	4055.77	.	AC=1;AF=0.500;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	0/1:206,193:0.48:399
chr3	121350583	rs1128159	C	T	208.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:16,10:0.38:26
chr3	121350593	rs1128158	C	A	399.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:13,16:0.55:29
chr3	121350616	rs1128154	G	T	436.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.969;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.49;ReadPosRankSum=1.639;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:19,19:0.50:38
chr3	121350966	rs9869984	C	G	8419.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr3	121351257	rs77852202	C	T	6734.77	.	AC=1;AF=0.500;AN=2;DB;DP=661;set=Intersection	GT:AD:AF:DP	0/1:336,318:0.49:654
chr3	121351338	rs2070180	C	T	7335.77	.	AC=1;AF=0.500;AN=2;DB;DP=707;set=Intersection	GT:AD:AF:DP	0/1:344,358:0.51:702
chr3	121351480	rs9815500	T	C	1052.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:56,46:0.45:102
chr3	121353254	rs2070179	T	C	12123.77	.	AC=2;AF=1.00;AN=2;DB;DP=439;set=Intersection	GT:AD:AF:DP	1/1:0,437:1.00:437
chr3	121353291	rs34667636	G	A	3370.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:164,162:0.50:326
chr3	121353328	rs6770842	A	C	1999.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:89,90:0.50:179
chr3	121354381	rs7620842	A	T	1115.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr3	121361646	rs12487377	G	A	1487.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:75,73:0.49:148
chr3	121361787	rs2070178	G	A	2322.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:88,112:0.56:200
chr3	121363680	rs34440810	C	T	6471.77	.	AC=1;AF=0.500;AN=2;DB;DP=709;set=Intersection	GT:AD:AF:DP	0/1:380,318:0.46:698
chr3	121366123	rs9818402	C	T	3018.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:135,139:0.51:274
chr3	121366377	rs7356043	A	G	1639.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:55,66:0.55:121
chr3	121388362	rs11363204	AT	A	624.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr3	121415610	rs33988592	G	A	3739.77	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:196,167:0.46:363
chr3	121418765	rs11927625	T	C	2772.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:82,119:0.59:201
chr3	121433926	rs9854052	T	A	395.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr3	121435621	rs9832267	T	C	13427.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.91;SOR=1.004;set=HC	GT:AD:AF:DP	1/1:0,299:1.00:299
chr3	121435624	rs9812411	C	T	13396.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.96;SOR=0.997;set=HC	GT:AD:AF:DP	1/1:0,298:1.00:298
chr3	121447904	.	G	GA	74.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.810;ClippingRankSum=0.000;DP=108;ExcessHet=3.0103;FS=1.389;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.987;QD=0.73;ReadPosRankSum=-0.053;SOR=0.949;set=HC	GT:AD:AF:DP	0/1:83,20:0.19:103
chr3	121448675	rs28497949	T	A	6899.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:1,248:1.00:249
chr3	121500479	rs368036963	TAC	T	658.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.755;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=1.778;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.56;ReadPosRankSum=0.894;SOR=1.406;set=HC	GT:AD:AF:DP	0/1:22,35:0.61:57
chr3	121507231	rs1141528	A	T	5964.77	.	AC=1;AF=0.500;AN=2;DB;DP=593;set=Intersection	GT:AD:AF:DP	0/1:291,289:0.50:580
chr3	121507371	rs141690316	CTTTTTA	C	4028.73	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:100,106:0.51:206
chr3	121507415	rs4073474	C	T	1423.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:40,56:0.58:96
chr3	121508830	rs6802815	A	T	951.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:60,63:0.51:123
chr3	121514458	rs141330650	TA	T,TAA	478.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.304;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=7.04;ReadPosRankSum=1.407;SOR=0.706;set=HC	GT:AD:AF:DP	1/2:13,26,29:0.38,0.43:68
chr3	121526037	rs4298081	T	G	116.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr3	121526099	rs4582090	A	G	428.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.540;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=1.760;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.87;ReadPosRankSum=0.231;SOR=0.250;set=HC	GT:AD:AF:DP	0/1:12,12:0.50:24
chr3	121526107	rs4280673	C	T	428.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.534;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=1.760;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.87;ReadPosRankSum=0.145;SOR=0.250;set=HC	GT:AD:AF:DP	0/1:12,12:0.50:24
chr3	121526152	rs5852278	TA	T	286.73	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:31,22:0.42:53
chr3	121526204	rs4543051	G	A	496.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.792;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.986;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.42;ReadPosRankSum=-1.640;SOR=0.540;set=HC	GT:AD:AF:DP	0/1:32,27:0.46:59
chr3	121527903	rs35072741	C	CT	55.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.326;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.30;ReadPosRankSum=-1.868;SOR=0.518;set=HC	GT:AD:AF:DP	0/1:33,10:0.23:43
chr3	121547527	rs1920320	A	G	527.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:19,21:0.53:40
chr3	121563271	rs11717089	C	T	924.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:42,44:0.51:86
chr3	121563285	rs11721291	T	C	1219.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:50,56:0.53:106
chr3	121563355	rs9884018	T	C	1568.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:100,81:0.45:181
chr3	121613205	rs4603998	G	C	1826.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr3	121630328	rs6438687	A	G	3071.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr3	121633964	rs2049331	C	T	3402.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:1,120:0.99:121
chr3	121634171	rs3215370	A	AT	8951.73	.	AC=2;AF=1.00;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	1/1:4,366:0.99:370
chr3	121634410	rs9812515	T	A	9755.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	1/1:0,349:1.00:349
chr3	121641528	rs7637569	G	A	3986.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr3	121641693	rs2293616	G	A	13249.77	.	AC=2;AF=1.00;AN=2;DB;DP=486;set=Intersection	GT:AD:AF:DP	1/1:0,481:1.00:481
chr3	121641821	rs2293615	A	G	12033.77	.	AC=2;AF=1.00;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	1/1:0,407:1.00:407
chr3	121642048	rs3817601	A	T	9043.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:1,323:1.00:324
chr3	121643143	rs3215371	A	AT	3191.73	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:6,148:0.96:154
chr3	121643170	rs2257109	A	T	6592.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:1,242:1.00:243
chr3	121643303	rs2257115	T	A	13451.77	.	AC=2;AF=1.00;AN=2;DB;DP=504;set=Intersection	GT:AD:AF:DP	1/1:2,501:1.00:503
chr3	121643337	rs2257119	G	A	10853.77	.	AC=2;AF=1.00;AN=2;DB;DP=404;MQ=60.05;set=Intersection	GT:AD:AF:DP	1/1:0,403:1.00:403
chr3	121643372	rs2257120	C	T	7437.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr3	121643427	rs2257123	G	A	4635.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.19;QD=41.76;SOR=3.362;set=HC	GT:AD:AF:DP	1/1:0,111:1.00:111
chr3	121643436	rs2257124	G	A	4220.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.24;QD=47.42;SOR=3.792;set=HC	GT:AD:AF:DP	1/1:0,89:1.00:89
chr3	121643447	rs34567530	A	AT	1226.73	.	AC=2;AF=1.00;AN=2;DB;DP=66;MQ=60.33;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr3	121643699	rs2257132	G	A	2279.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr3	121643804	rs2257212	C	T	8199.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr3	121643827	rs199522806	G	A	1214.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.519;ClippingRankSum=0.000;DB;DP=342;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.57;ReadPosRankSum=-0.060;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:253,87:0.26:340
chr3	121643893	rs2257214	T	C	6100.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr3	121646495	rs1882002	C	T	3130.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr3	121646641	rs1143670	A	G	12642.77	.	AC=2;AF=1.00;AN=2;DB;DP=491;set=Intersection	GT:AD:AF:DP	1/1:0,488:1.00:488
chr3	121646759	rs3762819	G	A	4251.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr3	121647286	rs1143671	C	T	6853.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr3	121647467	rs1316301	C	T	1902.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr3	121647782	rs1316397	C	G	1973.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr3	121648168	rs1143672	G	A	14994.77	.	AC=2;AF=1.00;AN=2;DB;DP=554;set=Intersection	GT:AD:AF:DP	1/1:0,550:1.00:550
chr3	121658082	rs874741	A	G	2435.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr3	121659197	rs3817599	G	A	3032.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr3	121712051	rs2877561	A	C	12614.77	.	AC=2;AF=1.00;AN=2;DB;DP=472;set=Intersection	GT:AD:AF:DP	1/1:0,467:1.00:467
chr3	121712980	rs3915060	C	T	17071.77	.	AC=2;AF=1.00;AN=2;DB;DP=639;set=Intersection	GT:AD:AF:DP	1/1:0,633:1.00:633
chr3	121720514	rs35657414	GT	G	396.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.916;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=2.738;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.61;ReadPosRankSum=0.870;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:22,38:0.63:60
chr3	121810427	rs57304749	CT	C	9035.73	.	AC=2;AF=1.00;AN=2;DB;DP=478;set=Intersection	GT:AD:AF:DP	1/1:4,417:0.99:421
chr3	121825197	rs2681417	G	A	11620.77	.	AC=2;AF=1.00;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	1/1:0,425:1.00:425
chr3	121836966	rs10580127	TGA	T	10371.73	.	AC=2;AF=1.00;AN=2;DB;DP=266;MQ=60.04;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr3	121976253	rs9869985	G	A	2555.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr3	122000871	rs4678174	C	T	2082.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;MQ=60.04;set=Intersection	GT:AD:AF:DP	0/1:150,105:0.41:255
chr3	122001099	rs2270916	T	C	2116.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:76,94:0.55:170
chr3	122003045	rs2036400	G	C	27481.77	.	AC=2;AF=1.00;AN=2;DB;DP=989;set=Intersection	GT:AD:AF:DP	1/1:0,981:1.00:981
chr3	122003757	rs1801725	G	T	10437.77	.	AC=1;AF=0.500;AN=2;DB;DP=1127;set=Intersection	GT:AD:AF:DP	0/1:617,499:0.45:1116
chr3	122003832	rs1801726	G	C	21499.77	.	AC=2;AF=1.00;AN=2;DB;DP=758;set=Intersection	GT:AD:AF:DP	1/1:2,750:1.00:752
chr3	122004098	rs4677948	A	T	2751.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr3	122060404	rs34173813	C	T	5241.77	.	AC=1;AF=0.500;AN=2;DB;DP=500;set=Intersection	GT:AD:AF:DP	0/1:239,254:0.52:493
chr3	122078677	.	TAAAAAAAAAAA	T	647.77	.	AC=1;AF=0.500;AN=2;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;FS=2.869;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.44;SOR=1.942;set=HC	GT:AD:AF:DP	0/1:3,19:0.86:22
chr3	122081659	rs9857709	AA	GC	2627.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.78;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr3	122103141	rs140995238	C	T	2050.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:98,98:0.50:196
chr3	122121563	rs3838601	T	TTTTC	1481.73	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:46,38:0.45:84
chr3	122128466	rs4306808	G	C	3111.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:104,133:0.56:237
chr3	122133321	rs6777596	C	T	1091.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:29,42:0.59:71
chr3	122145810	rs4677950	T	A	1886.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr3	122146660	rs57966074	T	TA	121.73	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:8,11:0.58:19
chr3	122161101	rs9842736	C	T	615.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:33,28:0.46:61
chr3	122168341	rs3749209	C	A	3975.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr3	122180011	rs56074178	C	G	731.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:37,33:0.47:70
chr3	122186188	rs4678193	C	T	11695.77	.	AC=2;AF=1.00;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	1/1:0,442:1.00:442
chr3	122215166	rs10625209	A	AAC,AACACACACAC,AACAC	713.73	.	AC=1,1,0;AF=0.500,0.500,0.00;AN=2;DB;DP=33;set=Intersection	GT:AF:DP	1/2:0.53,0.33:30
chr3	122255708	rs2270859	G	A	1279.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.977;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=0.777;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.55;ReadPosRankSum=0.589;SOR=0.866;set=HC	GT:AD:AF:DP	0/1:42,60:0.59:102
chr3	122259606	rs9851180	T	C	14791.77	.	AC=2;AF=1.00;AN=2;DB;DP=553;set=Intersection	GT:AD:AF:DP	1/1:1,545:1.00:546
chr3	122259640	rs28365795	T	C	6099.77	.	AC=1;AF=0.500;AN=2;DB;DP=556;set=Intersection	GT:AD:AF:DP	0/1:251,297:0.54:548
chr3	122259745	rs9831600	G	T,GT	4403.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.479;ClippingRankSum=0.000;DB;DP=266;ExcessHet=3.0103;FS=3.219;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.26;MQRankSum=0.609;QD=23.68;ReadPosRankSum=0.099;SOR=1.348;set=HC	GT:AD:AF:DP	1/2:8,82,96:0.44,0.52:186
chr3	122259782	rs9868934	A	G	3522.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:1,128:0.99:129
chr3	122269380	rs1979853	A	G	280.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr3	122271204	rs3216715	T	TA	140.73	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:24,13:0.35:37
chr3	122277160	rs9289198	G	T	1084.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:68,52:0.43:120
chr3	122277172	rs9289199	G	A	1311.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:77,63:0.45:140
chr3	122277268	rs34006803	G	A	3873.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:148,181:0.55:329
chr3	122285005	rs12485294	G	A	2371.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr3	122288210	rs2332285	G	A	11478.77	.	AC=2;AF=1.00;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	1/1:0,418:1.00:418
chr3	122289005	rs55797836	A	G	2696.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:153,127:0.45:280
chr3	122290579	rs2036342	C	T	1951.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:159,104:0.40:263
chr3	122296638	rs1875272	G	A	4179.77	.	AC=1;AF=0.500;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	0/1:203,202:0.50:405
chr3	122420050	rs61732765	C	T	3616.77	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:194,165:0.46:359
chr3	122437321	rs7645033	T	C	20389.77	.	AC=2;AF=1.00;AN=2;DB;DP=796;set=Intersection	GT:AD:AF:DP	1/1:2,779:1.00:781
chr3	122437834	rs3821688	A	G	11713.77	.	AC=2;AF=1.00;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	1/1:4,422:0.99:426
chr3	122471407	rs72280610	TA	T	2052.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.918;ClippingRankSum=0.000;DB;DP=231;ExcessHet=3.0103;FS=1.587;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=1.224;QD=9.37;ReadPosRankSum=1.274;SOR=0.533;set=HC	GT:AD:AF:DP	0/1:53,166:0.76:219
chr3	122474305	rs6794019	C	A	2465.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr3	122477743	rs11369405	C	CA	126.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.553;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=3.722;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.52;ReadPosRankSum=2.051;SOR=0.184;set=HC	GT:AD:AF:DP	0/1:21,15:0.42:36
chr3	122477795	rs2137210	G	A	1815.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr3	122478032	rs10657578	C	CCA,CCACA	1823.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=66;set=Intersection	GT:AF:DP	1/2:0.25,0.68:57
chr3	122512631	rs3806643	G	A	1234.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:1,38:0.97:39
chr3	122513964	rs891406	A	C	382.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr3	122605544	rs9864868	G	A	7967.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr3	122629589	rs7622250	A	G	386.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr3	122630323	rs2303982	T	G	5600.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr3	122630346	rs2303983	T	C	4601.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr3	122631896	rs2276782	A	T	4319.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr3	122642401	rs2276780	G	A	4574.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr3	122642415	rs2276779	G	C	5163.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr3	122642590	rs2276778	G	A	3887.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr3	122680311	.	C	CT	65.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.635;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=1.871;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.64;ReadPosRankSum=2.099;SOR=0.232;set=HC	GT:AD:AF:DP	0/1:29,11:0.28:40
chr3	122694820	rs895076	A	T	4849.77	.	AC=1;AF=0.500;AN=2;DB;DP=518;set=Intersection	GT:AD:AF:DP	0/1:250,256:0.51:506
chr3	122807995	rs836860	G	A	3511.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr3	122811042	rs836863	A	G	2372.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr3	122811187	.	G	GT	42.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.131;ClippingRankSum=0.000;DP=286;ExcessHet=3.0103;FS=3.196;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.17;ReadPosRankSum=0.685;SOR=0.977;set=HC	GT:AD:AF:DP	0/1:218,37:0.15:255
chr3	122821108	rs2717233	C	T	2079.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr3	122821385	rs2241961	T	C	9904.77	.	AC=2;AF=1.00;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	1/1:0,372:1.00:372
chr3	122821478	rs2241962	T	A	2539.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.540;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=1.778;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=21.71;ReadPosRankSum=1.182;SOR=0.642;set=HC	GT:AD:AF:DP	1/1:5,112:0.96:117
chr3	122821671	rs2241963	AT	GA	15628.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,349:1.00:349
chr3	122834887	rs836839	A	T	831.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:44,39:0.47:83
chr3	122835210	rs836840	A	G	951.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.544;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.82;ReadPosRankSum=-0.859;SOR=0.731;set=HC	GT:AD:AF:DP	0/1:45,43:0.49:88
chr3	122835232	rs2278668	T	C	643.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:27,26:0.49:53
chr3	122843110	rs861375	G	T	7302.77	.	AC=1;AF=0.500;AN=2;DB;DP=736;set=Intersection	GT:AD:AF:DP	0/1:378,348:0.48:726
chr3	122843212	rs2305051	C	T	3304.77	.	AC=1;AF=0.500;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	0/1:214,160:0.43:374
chr3	122864436	rs8739	G	A	2911.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:167,145:0.46:312
chr3	122864587	rs3215241	TAGAC	T	907.73	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:26,25:0.49:51
chr3	122865136	rs2673345	T	A	1935.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:94,91:0.49:185
chr3	122873923	rs2717225	G	C	1693.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:133,84:0.39:217
chr3	122880118	rs3828393	G	A	635.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:33,28:0.46:61
chr3	122880191	rs8935	T	C	2341.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:109,110:0.50:219
chr3	123008519	rs4677881	T	G	1041.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr3	123010276	rs9809236	G	A	7045.77	.	AC=1;AF=0.500;AN=2;DB;DP=622;set=Intersection	GT:AD:AF:DP	0/1:294,321:0.52:615
chr3	123014877	rs9881951	C	T	2114.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr3	123015094	rs9882534	G	C	6747.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr3	123018963	rs4482616	A	G	7207.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr3	123021838	rs9877581	A	G	1660.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr3	123021870	rs9844212	G	C	1211.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:57,54:0.49:111
chr3	123022740	.	G	GAAGAA,GAAGAGAAGAGAAGAGAAGAGAAGAA	1884.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=67.41;QD=104.71;SOR=1.863;set=HC	GT:AD:AF:DP	1/2:0,9,9:0.50,0.50:18
chr3	123037047	rs4327330	A	C	713.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr3	123047478	rs9855635	A	G	3506.77	.	AC=1;AF=0.500;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	0/1:159,180:0.53:339
chr3	123047666	rs9855969	A	G	10247.77	.	AC=2;AF=1.00;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	1/1:0,368:1.00:368
chr3	123066555	rs112525497	A	AAAGG	11644.73	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr3	123086698	.	G	GA	36.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.137;ClippingRankSum=0.000;DP=565;ExcessHet=3.0103;FS=1.681;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=5.022;QD=0.07;ReadPosRankSum=1.524;SOR=0.848;set=HC	GT:AD:AF:DP	0/1:464,80:0.15:544
chr3	123167249	rs4678027	G	A	899.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr3	123301242	rs820469	C	G	2742.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;MQ=59.94;set=Intersection	GT:AD:AF:DP	0/1:189,133:0.41:322
chr3	123303821	rs1271004	G	C	1752.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:154,96:0.38:250
chr3	123303960	rs820468	C	A	833.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:44,44:0.50:88
chr3	123332875	rs11399895	G	GT	980.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.328;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=4.994;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=1.653;QD=5.42;ReadPosRankSum=0.657;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:98,83:0.46:181
chr3	123337414	rs860224	C	G	1315.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:81,59:0.42:140
chr3	123338956	rs820457	T	A	1733.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.328;ClippingRankSum=0.000;DB;DP=472;ExcessHet=3.0103;FS=1.816;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.05;ReadPosRankSum=-1.030;SOR=0.812;set=HC	GT:AD:AF:DP	0/1:293,135:0.32:428
chr3	123348179	rs820447	A	G	413.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:6,19:0.76:25
chr3	123378534	rs39639	C	G	3880.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr3	123411589	rs40305	G	A	5225.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr3	123418913	rs865358	G	A	26689.77	.	AC=2;AF=1.00;AN=2;DB;DP=1014;set=Intersection	GT:AD:AF:DP	1/1:0,1006:1.00:1006
chr3	123440967	rs820355	G	A	14196.77	.	AC=2;AF=1.00;AN=2;DB;DP=538;set=Intersection	GT:AD:AF:DP	1/1:0,535:1.00:535
chr3	123451773	rs9833275	G	C	4194.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr3	123456432	rs2168439	C	T	7250.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr3	123457711	rs2198766	C	A	3203.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr3	123457893	rs9840993	G	A	14592.77	.	AC=2;AF=1.00;AN=2;DB;DP=554;set=Intersection	GT:AD:AF:DP	1/1:0,544:1.00:544
chr3	123633612	rs11551801	G	A	2165.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr3	123634046	rs2700373	G	A	8655.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr3	123650432	rs2271969	A	G	952.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.43;SOR=1.387;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr3	123650447	rs35352118	TA	T	109.06	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.551;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=9.91;ReadPosRankSum=-1.460;SOR=3.442;set=HC	GT:AD:AF:DP	1/1:1,10:0.91:11
chr3	123652476	rs6784695	G	A	4119.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr3	123665902	rs17310144	T	G	13294.77	.	AC=2;AF=1.00;AN=2;DB;DP=487;set=Intersection	GT:AD:AF:DP	1/1:0,479:1.00:479
chr3	123666192	rs17375977	C	T	3536.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr3	123674879	.	T	TA	63.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.352;ClippingRankSum=0.000;DP=185;ExcessHet=3.0103;FS=0.785;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=2.044;QD=0.38;ReadPosRankSum=-1.756;SOR=0.816;set=HC	GT:AD:AF:DP	0/1:139,28:0.17:167
chr3	123688760	rs34337446	C	G	7139.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr3	123694595	rs138944419	C	G	124.90	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.86;QD=24.98;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr3	123851972	rs7627646	G	A	640.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr3	123953526	rs13079305	C	T	652.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:38,30:0.44:68
chr3	123987496	rs73188176	A	G	4350.77	.	AC=1;AF=0.500;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	0/1:178,194:0.52:372
chr3	123988039	rs2272486	T	C	3442.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:165,170:0.51:335
chr3	124044713	rs41264649	C	T	639.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:32,27:0.46:59
chr3	124044949	rs2289778	C	T	6437.77	.	AC=1;AF=0.500;AN=2;DB;DP=621;set=Intersection	GT:AD:AF:DP	0/1:311,306:0.50:617
chr3	124045101	rs3217540	ACT	A	1186.73	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:35,35:0.50:70
chr3	124066121	rs67454662	CTGTGTGTG	C	1164.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.526;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.73;MQRankSum=-0.737;QD=26.47;ReadPosRankSum=-1.442;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:10,34:0.77:44
chr3	124113929	rs482285	A	T	2943.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr3	124128938	rs647010	A	G	4664.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr3	124132263	rs2289846	A	T	1662.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:76,73:0.49:149
chr3	124165217	rs624450	G	A	3606.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:76,102:0.57:178
chr3	124165226	rs140416290	TG	T	3459.73	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:58,89:0.61:147
chr3	124181261	rs535121	C	T	3935.77	.	AC=1;AF=0.500;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	0/1:188,188:0.50:376
chr3	124195987	rs572145	T	C	2088.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr3	124210344	rs10755077	C	A	4409.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr3	124237152	rs183149162	T	C	1410.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:71,69:0.49:140
chr3	124281980	rs2256831	T	C	1091.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:63,56:0.47:119
chr3	124303786	rs2250757	G	C	2895.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.017;ClippingRankSum=0.000;DB;DP=284;ExcessHet=3.0103;FS=0.935;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.42;ReadPosRankSum=-0.312;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:138,140:0.50:278
chr3	124351316	rs1708303	G	A	6971.77	.	AC=1;AF=0.500;AN=2;DB;DP=639;set=Intersection	GT:AD:AF:DP	0/1:304,331:0.52:635
chr3	124351424	rs1660038	T	C	5600.77	.	AC=1;AF=0.500;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	0/1:208,251:0.55:459
chr3	124352573	rs652046	A	G	918.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:77,43:0.36:120
chr3	124352868	rs10428097	A	T	1073.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:64,50:0.44:114
chr3	124355934	rs2276741	C	T	674.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:33,32:0.49:65
chr3	124369640	rs11372663	T	TA	3725.73	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:123,114:0.48:237
chr3	124377165	rs2175740	G	A	1037.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:29,42:0.59:71
chr3	124378386	rs333297	C	G	776.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:39,32:0.45:71
chr3	124379641	rs333291	C	A	700.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:59,32:0.35:91
chr3	124379748	rs333290	G	C	3688.77	.	AC=1;AF=0.500;AN=2;DB;DP=474;set=Intersection	GT:AD:AF:DP	0/1:280,187:0.40:467
chr3	124379817	rs333289	T	C	3947.77	.	AC=1;AF=0.500;AN=2;DB;DP=546;set=Intersection	GT:AD:AF:DP	0/1:325,214:0.40:539
chr3	124380793	rs665927	C	T	1058.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:87,56:0.39:143
chr3	124390796	rs3772782	C	T	1798.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:52,77:0.60:129
chr3	124393610	rs333354	A	G	731.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:25,30:0.55:55
chr3	124396338	rs333349	T	G	1436.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:85,67:0.44:152
chr3	124397249	rs35286809	AT	A	60.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.196;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=1.115;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.81;ReadPosRankSum=2.284;SOR=0.902;set=HC	GT:AD:AF:DP	0/1:59,16:0.21:75
chr3	124398571	rs821365	A	T	2376.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:46,69:0.60:115
chr3	124398589	rs821364	A	C	1962.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:33,48:0.59:81
chr3	124412634	rs333283	G	T	2370.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:84,111:0.57:195
chr3	124418846	rs2289427	C	T	3620.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:171,168:0.50:339
chr3	124449252	rs2279199	T	C	890.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:39,35:0.47:74
chr3	124449291	rs1139538	A	G	2025.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:73,87:0.54:160
chr3	124450258	rs4678146	T	C	943.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:38,46:0.55:84
chr3	124450321	rs10934681	T	C	1157.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:44,56:0.56:100
chr3	124451284	rs16835925	T	C	4310.77	.	AC=1;AF=0.500;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	0/1:230,210:0.48:440
chr3	124454174	rs3772804	A	G	742.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:27,27:0.50:54
chr3	124458816	rs694897	C	G	1255.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:69,60:0.47:129
chr3	124462710	rs3772807	G	C	3156.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:149,143:0.49:292
chr3	124483089	rs2291079	C	G	1104.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:42,43:0.51:85
chr3	124605736	rs6438861	T	C	75.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.513;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=3.784;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.30;ReadPosRankSum=-1.634;SOR=1.002;set=HC	GT:AD:AF:DP	0/1:25,8:0.24:33
chr3	124627024	rs1127233	T	G	2021.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:87,92:0.51:179
chr3	124632127	rs2270780	A	G	1037.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:49,46:0.48:95
chr3	124635404	rs4679164	G	A	797.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:42,39:0.48:81
chr3	124635444	rs4679165	A	G	493.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:28,24:0.46:52
chr3	124646705	rs10630030	A	AAAG	10687.73	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr3	124653710	rs10934701	A	G	3544.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr3	124692689	rs2270778	C	T	4027.77	.	AC=1;AF=0.500;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	0/1:248,205:0.45:453
chr3	124692785	rs2270779	C	T	1383.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:82,66:0.45:148
chr3	124696807	rs61603696	CA	C	947.73	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:77,55:0.42:132
chr3	124728472	rs6438868	C	G	3788.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr3	124728626	rs6438869	A	G	11603.77	.	AC=2;AF=1.00;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	1/1:0,443:1.00:443
chr3	124729193	rs6784454	T	G	2983.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr3	124731485	rs10804567	C	G	7973.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr3	124732618	rs6790837	A	G	9338.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:0,326:1.00:326
chr3	124732842	rs6438871	C	A	4817.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr3	124733649	rs6438873	T	G	6535.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr3	124738107	rs59232004	C	T	7317.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr3	124739892	rs6438874	G	A	12224.77	.	AC=2;AF=1.00;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	1/1:2,450:1.00:452
chr3	124746049	rs2981546	A	G	1259.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr3	124746182	rs2333041	C	A	7173.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:1,263:1.00:264
chr3	124746347	rs4404487	T	C	8835.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	1/1:0,338:1.00:338
chr3	124748226	rs2860440	G	A	6348.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr3	124774779	rs200147885	A	AGGGCAGC	238.73	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:12,7:0.37:19
chr3	124802677	rs1574340	A	G	2730.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr3	124802881	rs2981483	A	G	17479.77	.	AC=2;AF=1.00;AN=2;DB;DP=404;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.36;SOR=0.766;set=HC	GT:AD:AF:DP	1/1:0,394:1.00:394
chr3	124802888	rs2981482	C	T	17380.77	.	AC=2;AF=1.00;AN=2;DB;DP=404;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.23;SOR=0.828;set=HC	GT:AD:AF:DP	1/1:0,393:1.00:393
chr3	124803043	rs2981481	G	A	1907.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr3	124837684	rs621383	T	C	5433.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:2,210:0.99:212
chr3	124839470	rs863642	G	A	20900.77	.	AC=2;AF=1.00;AN=2;DB;DP=781;set=Intersection	GT:AD:AF:DP	1/1:0,777:1.00:777
chr3	124854425	rs702048	T	C	2163.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr3	124896475	rs143015454	A	AGGTAAAGCCTAT	759.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.888;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=6.369;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.67;ReadPosRankSum=-0.324;SOR=2.219;set=HC	GT:AD:AF:DP	0/1:29,14:0.33:43
chr3	124896861	rs545103	C	G	3457.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr3	124912207	rs13322132	C	T	1083.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:60,51:0.46:111
chr3	124930044	rs673881	A	G	301.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:19,16:0.46:35
chr3	124930408	rs686088	A	G	524.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:19,22:0.54:41
chr3	124951171	.	CTT	C,CT	2173.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.076;ClippingRankSum=0.000;DP=225;ExcessHet=3.0103;FS=0.791;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=10.55;ReadPosRankSum=0.226;SOR=0.598;set=HC	GT:AD:AF:DP	1/2:38,56,112:0.27,0.54:206
chr3	124951821	rs1053738	C	T	14639.77	.	AC=2;AF=1.00;AN=2;DB;DP=542;set=Intersection	GT:AD:AF:DP	1/1:0,536:1.00:536
chr3	124998098	rs10665336	C	CAA,CAAA	2692.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.414;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.24;MQRankSum=0.445;QD=29.27;ReadPosRankSum=0.762;SOR=0.808;set=HC	GT:AD:AF:DP	1/2:7,29,56:0.32,0.61:92
chr3	125179711	.	T	TA	89.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.532;ClippingRankSum=0.000;DP=48;ExcessHet=3.0103;FS=3.111;MLEAC=1;MLEAF=0.500;MQ=60.45;MQRankSum=-0.789;QD=2.04;ReadPosRankSum=-0.570;SOR=0.591;set=HC	GT:AD:AF:DP	0/1:33,11:0.25:44
chr3	125179732	rs112803860	C	CATAA	859.73	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:12,23:0.66:35
chr3	125223456	rs2076724	C	T	4469.77	.	AC=1;AF=0.500;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	0/1:209,213:0.50:422
chr3	125238792	.	G	GGCCCGGCCCAGCTCAGCCCAGCCCAGCCCAGCCCA	609.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.764;ClippingRankSum=0.000;DP=149;ExcessHet=3.0103;FS=1.443;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=4.134;QD=5.49;ReadPosRankSum=1.037;SOR=0.392;set=HC	GT:AD:AF:DP	0/1:100,11:0.10:111
chr3	125238971	.	G	A	3818.77	.	AC=1;AF=0.500;AN=2;DP=386;set=Intersection	GT:AD:AF:DP	0/1:180,177:0.50:357
chr3	125249340	rs2294053	G	A	3187.77	.	AC=1;AF=0.500;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	0/1:169,161:0.49:330
chr3	125250899	rs56256275	A	G	2369.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:82,103:0.56:185
chr3	125250956	rs9867731	G	A	1010.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:28,43:0.61:71
chr3	125266387	rs35535572	G	A	5473.77	.	AC=1;AF=0.500;AN=2;DB;DP=553;set=Intersection	GT:AD:AF:DP	0/1:279,259:0.48:538
chr3	125279122	rs12487030	A	T	1384.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.381;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=1.553;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.57;ReadPosRankSum=-0.104;SOR=0.883;set=HC	GT:AD:AF:DP	0/1:70,61:0.47:131
chr3	125279444	rs12496976	T	C	718.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:37,29:0.44:66
chr3	125297715	rs2922184	A	G	282.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:11,12:0.52:23
chr3	125301711	rs2979382	C	G	3274.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:152,159:0.51:311
chr3	125726048	rs2279819	G	C	1831.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:134,85:0.39:219
chr3	125734272	rs2279820	G	A	2449.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:80,107:0.57:187
chr3	125734465	rs9862310	G	A	5056.77	.	AC=1;AF=0.500;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	0/1:206,247:0.55:453
chr3	125741592	rs3817079	C	T	984.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:54,44:0.45:98
chr3	125741901	rs2270984	A	G	863.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:29,27:0.48:56
chr3	125741925	rs2270983	T	G	660.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:18,17:0.49:35
chr3	125745433	rs7646705	C	T	1840.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:76,73:0.49:149
chr3	125769757	rs4077563	C	T	2087.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:115,97:0.46:212
chr3	125775228	rs7613944	T	C	5738.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr3	125775428	rs6438964	G	A	613.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:45,29:0.39:74
chr3	125786662	rs36125006	G	GA	845.73	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:38,53:0.58:91
chr3	125786695	rs4308225	G	A	1662.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:99,75:0.43:174
chr3	125786760	rs4308226	G	A	2647.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:165,131:0.44:296
chr3	125786879	rs4234270	T	C	7943.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:2,304:0.99:306
chr3	125824334	rs4646755	T	G	559.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:30,27:0.47:57
chr3	125824382	rs10934744	C	A	1838.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:66,78:0.54:144
chr3	125843400	rs3217578	A	AG	1124.73	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:37,40:0.52:77
chr3	125844718	rs2278756	G	A	1095.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:67,48:0.42:115
chr3	125848911	rs1868125	A	G	229.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:12,11:0.48:23
chr3	125848945	rs2365002	T	C	319.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:33,19:0.37:52
chr3	125849031	rs873696	C	T	1134.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:69,53:0.43:122
chr3	125849238	rs2002287	G	A	1745.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:81,84:0.51:165
chr3	125850101	rs4646733	CA	TG	651.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;JOINED;set=Intersection	GT:AD:AF:DP	0/1:38,19:0.33:57
chr3	125850169	rs3821451	T	C	2483.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:120,121:0.50:241
chr3	125850193	rs3816366	A	G	2825.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:180,150:0.45:330
chr3	125850381	rs2305228	A	G	1506.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:92,70:0.43:162
chr3	125850434	rs2305227	C	T	615.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:32,27:0.46:59
chr3	125854311	rs3216713	TC	T	5977.73	.	AC=1;AF=0.500;AN=2;DB;DP=503;set=Intersection	GT:AD:AF:DP	0/1:249,242:0.49:491
chr3	125854341	rs369745670	G	A	7838.77	.	AC=1;AF=0.500;AN=2;DB;DP=722;set=Intersection	GT:AD:AF:DP	0/1:354,361:0.50:715
chr3	125855634	rs9282694	A	G	4309.77	.	AC=1;AF=0.500;AN=2;DB;DP=462;set=Intersection	GT:AD:AF:DP	0/1:245,216:0.47:461
chr3	125856916	rs6799991	A	G	430.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:31,18:0.37:49
chr3	125874388	rs2276731	C	T	2819.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr3	125878370	rs4646702	C	G	1755.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:106,85:0.45:191
chr3	126135070	rs143567171	C	CCGCGTCCCCGGCCTCAGGTCCG	1737.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.689;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=13.367;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.55;ReadPosRankSum=1.022;SOR=2.545;set=HC	GT:AD:AF:DP	0/1:67,38:0.36:105
chr3	126135365	rs6439010	G	T	2975.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:145,139:0.49:284
chr3	126137558	rs4679242	C	T	1871.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:111,93:0.46:204
chr3	126138778	rs2271630	T	C	4012.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr3	126138889	rs1877967	G	T	2050.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:98,98:0.50:196
chr3	126142583	rs74892038	C	T	1067.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:56,46:0.45:102
chr3	126157464	rs11444454	T	TG	1289.73	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:35,43:0.55:78
chr3	126158622	rs1799404	A	C	2679.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:128,133:0.51:261
chr3	126160601	rs4679121	C	T	1601.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:55,72:0.57:127
chr3	126160884	rs63288960	CATTA	C	1627.73	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:47,43:0.48:90
chr3	126169091	rs777493	T	C	11089.77	.	AC=2;AF=1.00;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	1/1:0,409:1.00:409
chr3	126169230	rs777494	C	T	17196.77	.	AC=2;AF=1.00;AN=2;DB;DP=639;set=Intersection	GT:AD:AF:DP	1/1:0,637:1.00:637
chr3	126169472	rs777495	T	C	2254.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr3	126184941	rs1799389	C	T	490.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:21,22:0.51:43
chr3	126185238	rs1687463	C	T	2252.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.555;ClippingRankSum=0.000;DB;DP=234;ExcessHet=3.0103;FS=1.035;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.058;QD=9.84;ReadPosRankSum=0.877;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:120,109:0.48:229
chr3	126185265	rs3830336	A	AT	1464.73	.	AC=1;AF=0.500;AN=2;DB;DP=159;MQ=60.07;set=Intersection	GT:AD:AF:DP	0/1:77,70:0.48:147
chr3	126189919	rs777499	A	G	2642.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:103,123:0.54:226
chr3	126194076	rs812367	T	C	6074.77	.	AC=1;AF=0.500;AN=2;DB;DP=562;set=Intersection	GT:AD:AF:DP	0/1:262,296:0.53:558
chr3	126194357	rs7624748	G	C	4568.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.55;SOR=1.207;set=HC	GT:AD:AF:DP	1/1:0,160:1.00:160
chr3	126202257	rs1687477	G	A	7163.77	.	AC=1;AF=0.500;AN=2;DB;DP=673;set=Intersection	GT:AD:AF:DP	0/1:329,342:0.51:671
chr3	126207222	rs777483	A	G	2250.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr3	126208249	rs777479	A	C	2092.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:108,92:0.46:200
chr3	126211479	rs2307882	C	CCTCT	4260.73	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr3	126215130	rs6797423	G	A	888.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:38,41:0.52:79
chr3	126218159	rs6771670	T	A	2054.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:121,93:0.43:214
chr3	126218167	rs1168595	G	A	3193.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:102,142:0.58:244
chr3	126218769	rs35907154	T	C	1628.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:32,41:0.56:73
chr3	126218788	rs6774768	T	C	1842.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:46,51:0.53:97
chr3	126219030	rs13072404	T	C	3314.77	.	AC=1;AF=0.500;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	0/1:210,168:0.44:378
chr3	126219086	rs13092625	A	G	1987.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:89,86:0.49:175
chr3	126219627	rs34025926	G	A	5663.77	.	AC=1;AF=0.500;AN=2;DB;DP=507;set=Intersection	GT:AD:AF:DP	0/1:222,273:0.55:495
chr3	126219750	rs201018413	A	C	1271.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:42,35:0.45:77
chr3	126219752	rs139417364	ACACAGCCTGGGC	A	1258.73	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:42,33:0.44:75
chr3	126219973	rs1177565	T	C	8262.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr3	126220539	rs9844797	A	G	574.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:34,25:0.42:59
chr3	126220845	rs7643584	G	A	560.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:41,25:0.38:66
chr3	126224480	.	A	AAGGG	3393.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.298;ClippingRankSum=0.000;DP=291;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=3.489;QD=14.44;ReadPosRankSum=-1.114;SOR=0.381;set=HC	GT:AD:AF:DP	0/1:140,95:0.40:235
chr3	126226518	rs9784244	C	T	9916.77	.	AC=2;AF=1.00;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	1/1:0,376:1.00:376
chr3	126227185	rs16837531	G	A	2670.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:108,128:0.54:236
chr3	126228410	rs729456	G	A	2628.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:95,121:0.56:216
chr3	126236348	rs1687480	T	C	4548.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr3	126243419	rs7613347	A	C	1077.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:39,52:0.57:91
chr3	126260608	rs6766712	G	T	4114.77	.	AC=1;AF=0.500;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	0/1:222,201:0.48:423
chr3	126261202	rs1056524	G	A	8072.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.427;ClippingRankSum=0.000;DB;DP=455;ExcessHet=3.0103;FS=0.523;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.10;ReadPosRankSum=0.133;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:229,217:0.49:446
chr3	126261207	rs1056523	C	T	8003.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.339;ClippingRankSum=0.000;DB;DP=452;ExcessHet=3.0103;FS=1.729;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.07;ReadPosRankSum=1.382;SOR=0.825;set=HC	GT:AD:AF:DP	0/1:232,211:0.48:443
chr3	126261345	rs1056522	G	A	8108.77	.	AC=1;AF=0.500;AN=2;DB;DP=680;set=Intersection	GT:AD:AF:DP	0/1:295,379:0.56:674
chr3	126268918	rs869463	G	A	3011.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:127,140:0.52:267
chr3	126268953	rs869464	T	G	2046.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:103,101:0.50:204
chr3	126270735	rs2291509	G	A	744.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:43,34:0.44:77
chr3	126270757	rs13071443	G	T	4192.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr3	126327278	rs79363895	G	A	2113.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:132,99:0.43:231
chr3	126328101	rs9856833	A	G	2767.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:168,144:0.46:312
chr3	126329791	.	T	TA	213.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.341;ClippingRankSum=0.000;DP=107;ExcessHet=3.0103;FS=1.007;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.673;QD=2.14;ReadPosRankSum=-0.747;SOR=0.516;set=HC	GT:AD:AF:DP	0/1:75,25:0.25:100
chr3	126329910	rs777241	A	G	11000.77	.	AC=2;AF=1.00;AN=2;DB;DP=434;MQ=60.02;set=Intersection	GT:AD:AF:DP	1/1:0,430:1.00:430
chr3	126340553	rs3732534	G	A	2046.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:116,98:0.46:214
chr3	126341284	rs3732533	T	C	4316.77	.	AC=1;AF=0.500;AN=2;DB;DP=467;set=Intersection	GT:AD:AF:DP	0/1:235,215:0.48:450
chr3	126365127	rs11453652	C	CT	6543.73	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr3	126373994	rs3108755	A	G	4283.77	.	AC=1;AF=0.500;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	0/1:253,219:0.46:472
chr3	126374855	rs9815125	A	G	1466.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:87,70:0.45:157
chr3	126384945	rs2271988	C	T	2322.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:88,108:0.55:196
chr3	126385067	rs2271989	C	T	7254.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.807;ClippingRankSum=0.000;DB;DP=409;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.00;ReadPosRankSum=-0.688;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:211,192:0.48:403
chr3	126385070	rs2271990	G	A	7181.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.707;ClippingRankSum=0.000;DB;DP=405;ExcessHet=3.0103;FS=0.361;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.00;ReadPosRankSum=0.247;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:212,187:0.47:399
chr3	126385891	rs2271991	C	G	2029.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:69,75:0.52:144
chr3	126451805	rs2272488	G	A	1718.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:70,79:0.53:149
chr3	126451937	rs2272487	G	T	3461.77	.	AC=1;AF=0.500;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	0/1:189,170:0.47:359
chr3	126452133	rs6800807	C	T	699.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:22,27:0.55:49
chr3	126633419	rs2303994	C	G	3885.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr3	126644974	rs732462	G	C	2257.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr3	126710471	rs184096331	G	A	366.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:40,19:0.32:59
chr3	126724881	rs12489348	G	C	5542.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr3	126737268	rs4679323	C	A	10748.77	.	AC=2;AF=1.00;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	1/1:0,398:1.00:398
chr3	126739012	rs891762	G	T	2592.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:156,127:0.45:283
chr3	126739291	rs6439030	T	C	3283.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr3	126751689	rs6439031	G	A	12896.77	.	AC=2;AF=1.00;AN=2;DB;DP=495;set=Intersection	GT:AD:AF:DP	1/1:0,478:1.00:478
chr3	126880488	rs7625800	T	C	7236.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr3	127105975	rs35530528	TA	T	1404.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.649;ClippingRankSum=0.000;DB;DP=256;ExcessHet=3.0103;FS=7.853;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.83;ReadPosRankSum=1.705;SOR=1.216;set=HC	GT:AD:AF:DP	0/1:93,148:0.61:241
chr3	127106144	rs9856643	C	A	6310.77	.	AC=1;AF=0.500;AN=2;DB;DP=813;set=Intersection	GT:AD:AF:DP	0/1:365,361:0.50:726
chr3	127106259	rs9856935	C	T	18296.77	.	AC=1;AF=0.500;AN=2;DB;DP=1537;set=Intersection	GT:AD:AF:DP	0/1:583,875:0.60:1458
chr3	127323830	rs893293	C	T	9691.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	1/1:0,360:1.00:360
chr3	127336934	rs782427	A	G	18439.77	.	AC=2;AF=1.00;AN=2;DB;DP=702;set=Intersection	GT:AD:AF:DP	1/1:0,696:1.00:696
chr3	127388150	rs2304551	A	G	1329.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:74,63:0.46:137
chr3	127391018	rs813633	A	G	2279.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr3	127396220	rs1658037	T	C	3676.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:1,117:0.99:118
chr3	127410959	rs814130	G	T	308.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.73;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr3	127429567	rs1010174	C	G	2241.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:114,101:0.47:215
chr3	127434580	rs627498	G	A	3390.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:189,160:0.46:349
chr3	127434856	rs477554	C	T	1663.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:85,77:0.48:162
chr3	127440083	rs13088071	A	C	991.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:48,47:0.49:95
chr3	127641968	rs4141499	C	A	1444.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:62,66:0.52:128
chr3	127774722	rs6802633	AA	GC	646.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;JOINED;set=Intersection	GT:AD:AF:DP	0/1:27,18:0.40:45
chr3	127775480	rs9827668	G	T	1801.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:62,74:0.54:136
chr3	127775499	rs9827421	C	T	2115.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:105,97:0.48:202
chr3	127775788	rs9847934	T	A	361.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.064;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=10.726;MLEAC=2;MLEAF=1.000;MQ=59.49;MQRankSum=0.000;QD=13.91;ReadPosRankSum=-1.365;SOR=3.332;set=HC	GT:AD:AF:DP	1/1:3,23:0.88:26
chr3	127779220	rs9848345	C	T	1047.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:47,40:0.46:87
chr3	127779306	rs2304018	G	A	2685.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:111,128:0.54:239
chr3	127783698	rs1044843	A	T	701.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:63,33:0.34:96
chr3	127784118	rs13070488	T	C	1122.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:74,53:0.42:127
chr3	127786551	rs9858267	G	A	1267.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:30,52:0.63:82
chr3	127786675	rs2276867	T	G	930.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:49,40:0.45:89
chr3	127799983	rs1057220	A	C	513.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:24,20:0.45:44
chr3	127800071	rs1057156	A	G	1260.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:76,60:0.44:136
chr3	127816433	rs34228187	T	C	1057.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:35,51:0.59:86
chr3	127817955	rs11720239	A	G	1760.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:73,69:0.49:142
chr3	127872506	rs11711710	C	T	4755.77	.	AC=1;AF=0.500;AN=2;DB;DP=499;set=Intersection	GT:AD:AF:DP	0/1:259,238:0.48:497
chr3	127872602	rs11719546	A	G	3442.77	.	AC=1;AF=0.500;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	0/1:209,162:0.44:371
chr3	127983495	rs2811544	T	C	4470.77	.	AC=1;AF=0.500;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	0/1:211,211:0.50:422
chr3	128081260	rs1735545	G	C	401.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.628;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=9.834;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.82;ReadPosRankSum=-0.058;SOR=0.069;set=HC	GT:AD:AF:DP	0/1:15,19:0.56:34
chr3	128181777	rs2659690	A	G	17248.77	.	AC=2;AF=1.00;AN=2;DB;DP=642;set=Intersection	GT:AD:AF:DP	1/1:1,632:1.00:633
chr3	128205860	rs1573858	G	C	3807.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr3	128292062	rs200346912	CT	C	506.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.617;ClippingRankSum=0.000;DB;DP=211;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.51;ReadPosRankSum=-0.387;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:136,66:0.33:202
chr3	128292213	rs2734046	A	G	10865.77	.	AC=2;AF=1.00;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	1/1:0,402:1.00:402
chr3	128292318	rs147519916	ATC	A	411.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.147;ClippingRankSum=0.000;DB;DP=647;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=2.945;QD=0.70;ReadPosRankSum=0.106;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:522,68:0.12:590
chr3	128580574	rs789248	T	C	1945.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:116,95:0.45:211
chr3	128614133	rs1683791	C	T	3540.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:127,164:0.56:291
chr3	128616325	rs1683804	C	T	2661.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:127,124:0.49:251
chr3	128618366	rs371460179	GGT	G	177.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.497;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=4.349;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.94;ReadPosRankSum=0.413;SOR=0.175;set=HC	GT:AD:AF:DP	0/1:23,13:0.36:36
chr3	128622742	rs66521976	G	A	954.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:35,41:0.54:76
chr3	128625242	rs35020699	C	T	1309.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:52,57:0.52:109
chr3	128627259	rs13081342	T	C	978.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:59,49:0.45:108
chr3	128629332	rs16852190	G	A	495.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:16,19:0.54:35
chr3	128634237	.	T	A	9015.77	.	AC=1;AF=0.500;AN=2;DP=851;set=Intersection	GT:AD:AF:DP	0/1:411,427:0.51:838
chr3	128663991	rs34092381	G	A	2018.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:120,102:0.46:222
chr3	128664549	rs13059115	G	T	5354.77	.	AC=1;AF=0.500;AN=2;DB;DP=489;set=Intersection	GT:AD:AF:DP	0/1:227,251:0.53:478
chr3	128720487	rs1871951	A	G	2549.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr3	128722958	rs73210697	A	G	1095.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr3	128755814	rs3732429	T	C	9703.77	.	AC=2;AF=1.00;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	1/1:0,365:1.00:365
chr3	128755953	rs3732430	G	A	2535.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr3	128755971	rs3732431	G	A	1807.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr3	128757560	rs2306529	C	G	1278.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr3	128853622	rs7646403	C	G	6098.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr3	128859202	rs10664499	C	CTTAG	18150.73	.	AC=2;AF=1.00;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	1/1:0,394:1.00:394
chr3	128864520	rs9842978	C	G	7330.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr3	128864540	rs9880527	A	G	7860.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr3	128877521	rs4452346	C	T	3354.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr3	128879689	rs199829036	AC	A	508.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:15,18:0.55:33
chr3	128890350	rs4303883	G	A	19068.77	.	AC=2;AF=1.00;AN=2;DB;DP=725;set=Intersection	GT:AD:AF:DP	1/1:0,713:1.00:713
chr3	128974022	.	CT	C	111.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.881;ClippingRankSum=0.000;DP=97;ExcessHet=3.0103;FS=8.360;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=0.000;QD=1.64;ReadPosRankSum=1.533;SOR=2.211;set=HC	GT:AD:AF:DP	0/1:49,19:0.28:68
chr3	128993029	.	G	GA	132.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.368;ClippingRankSum=0.000;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.26;MQRankSum=4.639;QD=2.11;ReadPosRankSum=-1.988;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:47,16:0.25:63
chr3	129020778	rs6765930	A	G	3405.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:99,140:0.59:239
chr3	129100086	rs116891090	T	A	4091.77	.	AC=1;AF=0.500;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	0/1:232,201:0.46:433
chr3	129100288	rs62266952	A	G	3237.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:146,153:0.51:299
chr3	129113078	rs114524531	T	C	1099.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:50,52:0.51:102
chr3	129120743	rs6764765	A	G	1563.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:106,75:0.41:181
chr3	129123327	rs200388634	G	GT	79.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.648;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.59;ReadPosRankSum=0.030;SOR=0.430;set=HC	GT:AD:AF:DP	0/1:38,12:0.24:50
chr3	129137188	rs62266958	C	T	6637.77	.	AC=1;AF=0.500;AN=2;DB;DP=581;set=Intersection	GT:AD:AF:DP	0/1:258,317:0.55:575
chr3	129140738	rs60414131	A	T	1198.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:38,46:0.55:84
chr3	129152144	rs140695	T	C	1455.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:112,77:0.41:189
chr3	129168854	.	CT	C	82.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.893;ClippingRankSum=0.000;DP=244;ExcessHet=3.0103;FS=1.610;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.46;ReadPosRankSum=1.728;SOR=0.531;set=HC	GT:AD:AF:DP	0/1:139,39:0.22:178
chr3	129185641	rs6770233	T	C	410.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:16,19:0.54:35
chr3	129185661	rs6805886	C	A	1307.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr3	129188325	rs7612530	G	A	463.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:27,22:0.45:49
chr3	129195663	rs2301570	C	T	1585.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:84,75:0.47:159
chr3	129206968	.	T	C	4387.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.189;ClippingRankSum=0.000;DP=227;ExcessHet=3.0103;FS=1.103;MLEAC=1;MLEAF=0.500;MQ=59.78;MQRankSum=-1.315;QD=20.22;ReadPosRankSum=0.377;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:106,111:0.51:217
chr3	129206971	rs377607412	G	A	4387.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.028;ClippingRankSum=0.000;DB;DP=238;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.79;MQRankSum=-1.336;QD=19.33;ReadPosRankSum=0.884;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:112,115:0.51:227
chr3	129210867	rs2285353	C	A	3931.77	.	AC=1;AF=0.500;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	0/1:185,179:0.49:364
chr3	129210977	rs2285354	G	C	10729.77	.	AC=1;AF=0.500;AN=2;DB;DP=917;set=Intersection	GT:AD:AF:DP	0/1:394,509:0.56:903
chr3	129234259	rs2260840	T	C	98.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:28,7:0.20:35
chr3	129247551	rs7984	A	G	2086.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:86,101:0.54:187
chr3	129269536	rs185134173	C	T	2651.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:147,131:0.47:278
chr3	129279597	rs2713627	C	T	9558.77	.	AC=2;AF=1.00;AN=2;DB;DP=377;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.76;SOR=1.034;set=HC	GT:AD:AF:DP	1/1:0,371:1.00:371
chr3	129281980	rs2713625	C	T	6766.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr3	129282137	rs2713624	T	C	1445.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:58,71:0.55:129
chr3	129284150	rs2285360	G	A	1308.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:28,58:0.67:86
chr3	129284637	rs2245469	A	G	822.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:35,34:0.49:69
chr3	129285175	rs11925462	G	A	1036.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:52,48:0.48:100
chr3	129285577	rs2285363	A	C	851.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.479;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=8.766;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.81;ReadPosRankSum=-1.542;SOR=0.046;set=HC	GT:AD:AF:DP	0/1:12,21:0.64:33
chr3	129286413	rs2245285	G	C	4970.77	.	AC=1;AF=0.500;AN=2;DB;DP=478;set=Intersection	GT:AD:AF:DP	0/1:242,229:0.49:471
chr3	129286531	rs2245281	C	A	6643.77	.	AC=1;AF=0.500;AN=2;DB;DP=601;set=Intersection	GT:AD:AF:DP	0/1:289,304:0.51:593
chr3	129289752	rs2285365	C	T	10247.77	.	AC=1;AF=0.500;AN=2;DB;DP=1035;set=Intersection	GT:AD:AF:DP	0/1:529,497:0.48:1026
chr3	129289831	rs2244962	A	G	6290.77	.	AC=1;AF=0.500;AN=2;DB;DP=701;set=Intersection	GT:AD:AF:DP	0/1:393,306:0.44:699
chr3	129291499	rs2285368	G	A	2351.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:84,109:0.56:193
chr3	129291751	rs2244708	T	C	6454.77	.	AC=1;AF=0.500;AN=2;DB;DP=594;set=Intersection	GT:AD:AF:DP	0/1:276,317:0.53:593
chr3	129292442	rs376922565	C	T	3077.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:156,150:0.49:306
chr3	129293183	rs2625962	T	C	4617.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr3	129293256	rs2255703	T	C	3053.77	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:208,154:0.43:362
chr3	129294294	rs11919862	G	C	1165.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:39,51:0.57:90
chr3	129302455	rs2285370	G	A	2029.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:72,96:0.57:168
chr3	129303072	rs2285371	G	A	6921.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.562;ClippingRankSum=0.000;DB;DP=835;ExcessHet=3.0103;FS=1.096;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.45;ReadPosRankSum=-0.588;SOR=0.805;set=HC	GT:AD:AF:DP	0/1:420,399:0.49:819
chr3	129303197	rs2811463	T	C	7434.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr3	129304797	rs2285372	G	A	5559.77	.	AC=1;AF=0.500;AN=2;DB;DP=641;set=Intersection	GT:AD:AF:DP	0/1:351,281:0.44:632
chr3	129305460	rs2301572	C	T	4209.77	.	AC=1;AF=0.500;AN=2;DB;DP=497;set=Intersection	GT:AD:AF:DP	0/1:276,213:0.44:489
chr3	129308096	rs13079843	G	A	350.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:33,18:0.35:51
chr3	129308425	rs2251016	G	A	703.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:20,32:0.62:52
chr3	129308497	rs2251008	A	C	261.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:11,14:0.56:25
chr3	129324193	rs7619850	A	G	1619.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr3	129546729	rs784689	T	C	13053.77	.	AC=2;AF=1.00;AN=2;DB;DP=490;set=Intersection	GT:AD:AF:DP	1/1:0,481:1.00:481
chr3	129694934	rs784705	C	A	2863.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr3	129695440	rs13097335	G	T	397.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:14,16:0.53:30
chr3	129695538	rs784704	C	T	4896.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr3	129695954	rs5662	T	C	5203.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr3	129696041	rs5663	A	G	3161.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr3	129811073	rs13066399	T	C	726.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:46,39:0.46:85
chr3	130095031	rs9835065	C	T	2307.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:86,102:0.54:188
chr3	130098349	rs16845861	G	A	6070.77	.	AC=1;AF=0.500;AN=2;DB;DP=580;set=Intersection	GT:AD:AF:DP	0/1:286,285:0.50:571
chr3	130103539	rs1453242	C	T	594.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:39,25:0.39:64
chr3	130103709	rs1453241	G	A	4723.77	.	AC=1;AF=0.500;AN=2;DB;DP=544;set=Intersection	GT:AD:AF:DP	0/1:304,232:0.43:536
chr3	130104062	rs10212241	T	C	3959.77	.	AC=1;AF=0.500;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	0/1:200,198:0.50:398
chr3	130104206	rs10212372	A	G	1202.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:49,49:0.50:98
chr3	130108063	rs57575291	A	G	1456.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:49,60:0.55:109
chr3	130109993	rs35898730	T	C	3493.77	.	AC=1;AF=0.500;AN=2;DB;DP=357;MQ=60.03;set=Intersection	GT:AD:AF:DP	0/1:193,162:0.46:355
chr3	130110550	rs11917356	A	G	1450.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:34,65:0.66:99
chr3	130113635	rs10934938	T	G	51.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:6,3:0.33:9
chr3	130114408	rs5852594	AC	A	6078.73	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr3	130116696	rs12488457	A	C	4548.77	.	AC=1;AF=0.500;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	0/1:245,215:0.47:460
chr3	130116972	rs35177024	GT	G	101.84	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.169;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=0.959;QD=3.29;ReadPosRankSum=0.331;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:16,15:0.48:31
chr3	130122409	rs5852595	TG	T	3501.73	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:144,153:0.52:297
chr3	130122552	rs148970927	TACACAC	T	1252.73	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:20,36:0.64:56
chr3	130124270	rs1497313	A	G	1019.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:61,53:0.46:114
chr3	130124491	rs10934940	G	A	2219.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:99,100:0.50:199
chr3	130124989	rs4688761	C	T	2827.77	.	AC=1;AF=0.500;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	0/1:200,143:0.42:343
chr3	130125116	rs1497312	G	C	1365.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:63,63:0.50:126
chr3	130129322	rs35886424	G	C	2563.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:109,118:0.52:227
chr3	130129517	rs35209265	A	AG	2414.73	.	AC=1;AF=0.500;AN=2;DB;DP=139;MQ=60.08;set=Intersection	GT:AD:AF:DP	0/1:64,71:0.53:135
chr3	130132202	rs16827446	C	T	1413.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:29,52:0.64:81
chr3	130132302	rs11717623	T	A	5313.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.315;ClippingRankSum=0.000;DB;DP=338;ExcessHet=3.0103;FS=0.843;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.96;ReadPosRankSum=-0.321;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:193,140:0.42:333
chr3	130132302	.	TAG	AAT	2944	.	AC=1;AF=0.500;AN=2;BRF=0.44;FR=0.5000;HP=1;HapScore=1;MGOF=5;MMLQ=25;MQ=60.0;NF=48;NR=39;PP=2944;QD=20;SC=TACTTATGTCTAGCAGAGAAT;SbPval=0.5;Source=Platypus;TC=234;TCF=131;TCR=103;TR=87;WE=130132312;WS=130132292;set=Platypus	GT:AD:AF:DP	1/0:147,87:0.37:234
chr3	130132304	rs11713542	G	T	5313.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.485;ClippingRankSum=0.000;DB;DP=343;ExcessHet=3.0103;FS=1.308;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.72;ReadPosRankSum=0.077;SOR=0.786;set=HC	GT:AD:AF:DP	0/1:196,142:0.42:338
chr3	130132509	rs2219026	A	G	926.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:40,38:0.49:78
chr3	130132851	rs10512767	A	G	6813.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr3	130134453	rs13070906	CA	TG	2516.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;JOINED;set=Intersection	GT:AD:AF:DP	0/1:51,64:0.56:115
chr3	130134492	rs16827497	T	C	1463.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:84,73:0.46:157
chr3	130134563	rs7628563	G	A	4020.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr3	130134713	rs13071563	G	T	104.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:7,5:0.42:12
chr3	130135456	rs6439233	T	C	3110.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr3	130135575	rs4688798	A	T	5645.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr3	130137866	rs13062453	G	A	461.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:14,20:0.59:34
chr3	130139884	rs12636289	C	T	39.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:9,3:0.25:12
chr3	130141427	rs976324	G	T	293.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:9,11:0.55:20
chr3	130141452	rs976325	A	G	319.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:12,15:0.56:27
chr3	130142584	rs2896545	A	T	564.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:13,23:0.64:36
chr3	130142587	rs35980322	AT	A	144.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.536;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=3.906;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=1.442;QD=3.81;ReadPosRankSum=-0.908;SOR=0.188;set=HC	GT:AD:AF:DP	0/1:25,13:0.34:38
chr3	130142843	rs976558	C	T	335.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:17,16:0.48:33
chr3	130144984	rs1874599	G	C	674.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr3	130145175	rs9859372	G	A	2760.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:126,129:0.51:255
chr3	130148510	rs9875499	C	T	5025.77	.	AC=1;AF=0.500;AN=2;DB;DP=661;set=Intersection	GT:AD:AF:DP	0/1:372,282:0.43:654
chr3	130158343	rs2403340	C	T	2487.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:150,121:0.45:271
chr3	130162395	rs9883988	A	G	9741.77	.	AC=2;AF=1.00;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	1/1:0,362:1.00:362
chr3	130174334	rs819085	G	A	3473.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr3	130187817	rs322113	T	C	5950.77	.	AC=1;AF=0.500;AN=2;DB;DP=579;set=Intersection	GT:AD:AF:DP	0/1:296,278:0.48:574
chr3	130189918	rs10668406	T	TTG	425.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.945;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=2.191;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=1.512;QD=10.14;ReadPosRankSum=0.122;SOR=1.702;set=HC	GT:AD:AF:DP	0/1:24,18:0.43:42
chr3	130190630	rs322117	G	A	4101.77	.	AC=1;AF=0.500;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	0/1:189,202:0.52:391
chr3	130190720	rs11355796	AT	A	4284.73	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:152,150:0.50:302
chr3	130190777	rs322118	G	A	2113.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:126,100:0.44:226
chr3	130282567	rs78652791	G	A	1690.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:62,67:0.52:129
chr3	130284284	rs9830253	G	A	7612.77	.	AC=1;AF=0.500;AN=2;DB;DP=777;set=Intersection	GT:AD:AF:DP	0/1:400,367:0.48:767
chr3	130286886	rs9836961	T	C	1081.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:109,60:0.36:169
chr3	130289617	rs10934949	T	C	11161.77	.	AC=2;AF=1.00;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	1/1:0,400:1.00:400
chr3	130300650	rs6439249	T	C	3538.77	.	AC=1;AF=0.500;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	0/1:194,167:0.46:361
chr3	130308702	rs4515022	A	G	1046.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:2,43:0.96:45
chr3	130311398	rs73868925	C	T	820.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:57,44:0.44:101
chr3	130313017	rs1467015	T	G	298.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr3	130313219	rs77967786	G	A	1027.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:62,53:0.46:115
chr3	130317341	rs4336088	G	A	7513.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr3	130360600	.	TA	T	75.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.479;ClippingRankSum=0.000;DP=199;ExcessHet=3.0103;FS=0.753;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.41;ReadPosRankSum=2.139;SOR=0.601;set=HC	GT:AD:AF:DP	0/1:149,35:0.19:184
chr3	130367860	.	CT	C	118.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.498;ClippingRankSum=0.000;DP=88;ExcessHet=3.0103;FS=2.383;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.41;ReadPosRankSum=-0.417;SOR=0.397;set=HC	GT:AD:AF:DP	0/1:62,22:0.26:84
chr3	130613634	rs112703671	C	G	3091.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:152,147:0.49:299
chr3	130651096	rs2685178	T	C	347.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:23,18:0.44:41
chr3	130674022	rs218494	A	G	639.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr3	130678263	rs2760271	T	C	424.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:14,21:0.60:35
chr3	130683005	rs140015524	C	CA	2496.73	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:103,83:0.45:186
chr3	130715748	rs3773814	A	C	1891.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:68,83:0.55:151
chr3	130718472	rs16835513	G	A	3965.77	.	AC=1;AF=0.500;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	0/1:215,185:0.46:400
chr3	130734061	rs7641006	C	T	4716.77	.	AC=1;AF=0.500;AN=2;DB;DP=605;set=Intersection	GT:AD:AF:DP	0/1:348,242:0.41:590
chr3	130734887	rs34645149	G	GT	2056.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.687;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=1.809;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=0.293;QD=17.88;ReadPosRankSum=0.375;SOR=1.228;set=HC	GT:AD:AF:DP	1/1:9,106:0.92:115
chr3	130743812	rs35558913	G	A	6127.77	.	AC=1;AF=0.500;AN=2;DB;DP=571;set=Intersection	GT:AD:AF:DP	0/1:272,287:0.51:559
chr3	130828790	rs9850655	G	A	889.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:28,44:0.61:72
chr3	130851101	rs4974466	A	G	117.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:22,8:0.27:30
chr3	130852185	rs2674613	T	C	741.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:64,43:0.40:107
chr3	130873723	rs1400013	T	G	1922.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:80,87:0.52:167
chr3	130881409	rs1913898	T	C	1873.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:90,88:0.49:178
chr3	130887626	rs114592630	A	G	1311.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:36,52:0.59:88
chr3	130947435	rs3738000	A	T	1793.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:91,90:0.50:181
chr3	131186893	rs56928817	CA	C	333.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.516;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=14.268;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=1.061;QD=6.30;ReadPosRankSum=-0.128;SOR=3.061;set=HC	GT:AD:AF:DP	0/1:25,28:0.53:53
chr3	131188377	rs3830301	TAC	T	920.73	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:27,36:0.57:63
chr3	131261662	rs10716194	TG	T	10886.73	.	AC=2;AF=1.00;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	1/1:5,379:0.99:384
chr3	131404572	rs6439314	A	C	5119.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr3	131404641	rs6439315	C	A	3701.77	.	AC=1;AF=0.500;AN=2;DB;DP=483;set=Intersection	GT:AD:AF:DP	0/1:244,190:0.44:434
chr3	131415340	rs2369134	C	T	2279.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:119,106:0.47:225
chr3	131418898	.	CTTT	C	608.87	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.289;ClippingRankSum=0.000;DP=91;ExcessHet=3.0103;FS=2.350;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.91;ReadPosRankSum=2.412;SOR=0.416;set=HC	GT:AD:AF:DP	0/1:10,26:0.72:36
chr3	131418966	rs3883881	T	C	317.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:5,11:0.69:16
chr3	131704852	rs79775365	T	C	724.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:35,34:0.49:69
chr3	131756241	rs2141570	T	C	8810.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chr3	131756349	rs1569282	A	G	21679.77	.	AC=2;AF=1.00;AN=2;DB;DP=831;set=Intersection	GT:AD:AF:DP	1/1:4,819:1.00:823
chr3	131756375	rs1569281	A	G	21671.77	.	AC=2;AF=1.00;AN=2;DB;DP=823;set=Intersection	GT:AD:AF:DP	1/1:1,816:1.00:817
chr3	132047029	.	G	GA	482.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.245;ClippingRankSum=0.000;DP=530;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.95;ReadPosRankSum=0.815;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:412,96:0.19:508
chr3	132063914	rs972774	A	T	4597.77	.	AC=1;AF=0.500;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	0/1:194,213:0.52:407
chr3	132153228	.	C	CA	309.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.252;ClippingRankSum=0.000;DP=110;ExcessHet=3.0103;FS=1.935;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.279;QD=3.16;ReadPosRankSum=-0.776;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:64,34:0.35:98
chr3	132166148	rs377096498	AT	A	116.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.545;ClippingRankSum=0.000;DB;DP=351;ExcessHet=3.0103;FS=3.555;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=4.118;QD=0.35;ReadPosRankSum=0.164;SOR=0.998;set=HC	GT:AD:AF:DP	0/1:272,64:0.19:336
chr3	132179072	rs72220142	G	GT	286.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.003;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.73;ReadPosRankSum=1.880;SOR=0.642;set=HC	GT:AD:AF:DP	0/1:128,38:0.23:166
chr3	132179280	.	AT	A	70.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.787;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.36;ReadPosRankSum=0.568;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:19,11:0.37:30
chr3	132218724	rs77666121	T	C	1765.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:107,82:0.43:189
chr3	132221076	rs200192843	CTT	C,CT	2608.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.469;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.22;MQRankSum=0.672;QD=14.91;ReadPosRankSum=0.251;SOR=0.918;set=HC	GT:AD:AF:DP	1/2:15,67,93:0.38,0.53:175
chr3	132360883	rs821572	C	T	7535.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr3	132363752	.	TA	T	97.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.774;ClippingRankSum=0.000;DP=299;ExcessHet=3.0103;FS=2.175;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.36;ReadPosRankSum=-0.357;SOR=0.930;set=HC	GT:AD:AF:DP	0/1:223,51:0.19:274
chr3	133099245	rs1197314	G	A	7354.77	.	AC=1;AF=0.500;AN=2;DB;DP=792;set=Intersection	GT:AD:AF:DP	0/1:422,353:0.46:775
chr3	133108978	rs1197296	A	G	3799.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr3	133114513	rs1197301	A	C	1639.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr3	133114893	rs1197300	C	T	2463.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr3	133166403	rs7644197	A	G	464.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:29,21:0.42:50
chr3	133191093	rs899458	A	G	1223.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:62,61:0.50:123
chr3	133329943	rs1444601	G	A	4364.77	.	AC=1;AF=0.500;AN=2;DB;DP=478;set=Intersection	GT:AD:AF:DP	0/1:258,212:0.45:470
chr3	133335787	rs3732574	C	T	849.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:26,35:0.57:61
chr3	133341988	rs10935070	T	C	941.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:33,42:0.56:75
chr3	133368362	rs3192149	T	G	6816.77	.	AC=1;AF=0.500;AN=2;DB;DP=578;set=Intersection	GT:AD:AF:DP	0/1:263,308:0.54:571
chr3	133374030	rs7639941	T	C	1554.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr3	133375785	rs2718801	G	A	6536.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr3	133377782	rs2718804	G	A	629.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:59,35:0.37:94
chr3	133380130	rs2718805	T	C	1279.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr3	133465283	rs1130459	A	G	2211.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:116,107:0.48:223
chr3	133474147	rs8177225	T	G	1498.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:47,62:0.57:109
chr3	133483696	rs1880669	T	C	2961.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:150,148:0.50:298
chr3	133485133	rs2692696	A	G	9316.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	1/1:2,340:0.99:342
chr3	133485371	rs1525891	G	C	884.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:37,37:0.50:74
chr3	133486958	rs8649	G	C	2126.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:96,97:0.50:193
chr3	133489583	rs1525890	G	A	465.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:20,21:0.51:41
chr3	133493705	rs35736766	GT	G	2149.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.035;ClippingRankSum=0.000;DB;DP=222;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.34;ReadPosRankSum=1.400;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:50,158:0.76:208
chr3	133493827	rs2715626	T	C	2659.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:103,125:0.55:228
chr3	133524717	rs1107413	G	C	6351.77	.	AC=1;AF=0.500;AN=2;DB;DP=648;set=Intersection	GT:AD:AF:DP	0/1:339,309:0.48:648
chr3	133546599	.	C	G	182.78	.	AC=2;AF=1.00;AN=2;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=66.83;QD=20.31;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr3	133553527	rs2280672	C	T	3368.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr3	133556964	rs139009223	ACCGTGCCGGGCC	A	7826.73	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr3	133560005	rs201380383	CGCACACACATGCGTGT	C	6106.73	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:145,159:0.52:304
chr3	133583577	rs3811646	C	T	2590.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.784;ClippingRankSum=0.000;DB;DP=291;ExcessHet=3.0103;FS=0.930;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.22;ReadPosRankSum=-0.403;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:149,132:0.47:281
chr3	133654488	rs56078520	G	A	823.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:34,36:0.51:70
chr3	133661684	rs35473313	C	T	505.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:19,26:0.58:45
chr3	133673711	rs9881514	C	T	2305.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:108,104:0.49:212
chr3	133692497	rs4634113	A	G	611.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:41,28:0.41:69
chr3	133692743	rs4241362	C	T	2397.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:125,117:0.48:242
chr3	133698280	rs4640563	C	G	9876.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:0,363:1.00:363
chr3	133941320	rs1131262	C	T	375.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:23,18:0.44:41
chr3	133941534	rs7611104	A	G	294.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr3	133969352	rs139860270	G	A	403.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.702;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.51;ReadPosRankSum=-0.847;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:39,23:0.37:62
chr3	133969437	.	A	AG	896.73	.	AC=2;AF=1.00;AN=2;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr3	133969487	.	G	GC	500.73	.	AC=2;AF=1.00;AN=2;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr3	134080661	rs1077718	A	G	6796.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr3	134085070	rs67655717	GAAGT	G	11920.73	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr3	134266124	rs12637751	A	G	4466.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr3	134266148	rs12632372	G	C	5534.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr3	134266321	rs11927068	A	G	4440.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr3	134277195	rs35934324	A	AT	1908.73	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:1,77:0.99:78
chr3	134280395	rs6777283	T	A	4454.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr3	134293619	rs4586863	A	G	1149.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.13;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr3	134322814	rs2293294	G	C	10302.77	.	AC=2;AF=1.00;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	1/1:0,357:1.00:357
chr3	134323156	rs4955535	A	G	9821.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	1/1:1,373:1.00:374
chr3	134331874	rs7626611	T	C	2940.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr3	134369611	.	T	C	1191.77	.	AC=1;AF=0.500;AN=2;DP=98;set=Intersection	GT:AD:AF:DP	0/1:51,46:0.47:97
chr3	134369716	rs13060869	C	A	13732.77	.	AC=2;AF=1.00;AN=2;DB;DP=544;set=Intersection	GT:AD:AF:DP	1/1:1,529:1.00:530
chr3	134514579	rs9852662	T	C	27470.77	.	AC=2;AF=1.00;AN=2;DB;DP=1057;set=Intersection	GT:AD:AF:DP	1/1:0,1041:1.00:1041
chr3	134880745	rs2270882	G	T	978.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:26,38:0.59:64
chr3	134884652	rs1159404	A	C	926.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:27,40:0.60:67
chr3	134898742	rs1042787	C	T	2423.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:114,118:0.51:232
chr3	134968465	rs4243397	T	C	1792.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr3	135720241	rs4678432	T	C	3197.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr3	135720851	rs6779903	G	T	10551.77	.	AC=2;AF=1.00;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	1/1:0,387:1.00:387
chr3	135721036	rs34629706	C	T	1725.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:110,85:0.44:195
chr3	135742057	rs113986045	G	GTGTTTTGTTT	3383.73	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr3	135759669	rs3832193	T	TG	5033.73	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:2,145:0.99:147
chr3	135806933	rs78473846	T	A	328.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.499;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=1.571;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.83;ReadPosRankSum=0.314;SOR=0.414;set=HC	GT:AD:AF:DP	0/1:22,20:0.48:42
chr3	135822011	rs75262249	A	G	619.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:21,24:0.53:45
chr3	135913665	rs1992952	A	G	1911.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr3	135975250	rs113593719	T	A	737.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:31,30:0.49:61
chr3	135980673	rs2290131	C	T	648.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:18,27:0.60:45
chr3	136035737	rs9833162	A	G	1542.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:67,66:0.50:133
chr3	136045213	rs17265675	G	A	2712.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:166,136:0.45:302
chr3	136057142	rs111861599	AATT	A	2057.73	.	AC=1;AF=0.500;AN=2;DB;DP=93;MQ=60.12;set=Intersection	GT:AD:AF:DP	0/1:39,53:0.58:92
chr3	136059537	rs503973	G	C	6208.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr3	136088038	rs9860801	G	A	2586.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:117,123:0.51:240
chr3	136139878	rs9819496	G	A	622.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:54,33:0.38:87
chr3	136192645	.	TA	T	74.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.11;ReadPosRankSum=-3.024;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:14,10:0.42:24
chr3	136196028	rs16843991	T	C	865.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:49,42:0.46:91
chr3	136196071	rs1394092	C	T	4456.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr3	136218930	rs900048	C	T	457.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr3	136573289	rs9865545	G	A	2328.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:131,114:0.47:245
chr3	136573440	rs9827648	A	G	5998.77	.	AC=1;AF=0.500;AN=2;DB;DP=629;set=Intersection	GT:AD:AF:DP	0/1:315,294:0.48:609
chr3	136574501	rs1052618	A	G	1582.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;MQ=60.07;set=Intersection	GT:AD:AF:DP	0/1:79,72:0.48:151
chr3	136574578	rs3076229	T	TTAA	709.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:23,20:0.47:43
chr3	136649463	rs7648817	C	T	703.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:49,35:0.42:84
chr3	136699133	rs5852860	CT	C	386.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.375;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.65;MQRankSum=0.708;QD=12.09;ReadPosRankSum=2.501;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:5,27:0.84:32
chr3	136701295	rs361239	G	T	332.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:19,15:0.44:34
chr3	136714514	rs111301551	A	G	413.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:15,18:0.55:33
chr3	136728886	rs361235	G	T	1989.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr3	136739387	rs63332362	CT	C	7530.73	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr3	136739406	rs1385306	C	G	5981.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr3	137717991	rs6764398	G	C	3243.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr3	137748518	rs41265447	T	C	1181.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:37,50:0.57:87
chr3	137781923	rs329388	A	C	310.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:14,15:0.52:29
chr3	137783700	rs179282	T	C	757.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:33,34:0.51:67
chr3	137786442	rs442800	T	C	2629.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:114,130:0.53:244
chr3	137787047	rs374045	C	T	608.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:45,29:0.39:74
chr3	137787192	rs446644	T	C	1730.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:116,89:0.43:205
chr3	137787282	rs419075	T	C	1537.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.452;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=1.992;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.49;ReadPosRankSum=3.792;SOR=0.528;set=HC	GT:AD:AF:DP	0/1:83,79:0.49:162
chr3	137787355	rs446847	T	C	1724.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr3	137787935	rs382629	G	A	1222.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:94,66:0.41:160
chr3	137787963	rs445025	T	G	1528.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:115,79:0.41:194
chr3	137788123	rs425938	T	G	940.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:22,43:0.66:65
chr3	137788141	rs407009	T	A	692.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:19,28:0.60:47
chr3	137799291	rs384828	A	T	1487.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:75,75:0.50:150
chr3	137799498	rs405602	T	C	767.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:31,31:0.50:62
chr3	137800656	rs2622711	A	G	1360.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:53,60:0.53:113
chr3	137807259	rs2724693	G	A	1016.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:59,53:0.47:112
chr3	137816817	rs7629243	A	C	1253.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:47,50:0.52:97
chr3	137843018	rs1564496	G	C	1605.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.688;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=2.812;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.04;ReadPosRankSum=-0.129;SOR=0.498;set=HC	GT:AD:AF:DP	0/1:84,76:0.47:160
chr3	137843106	rs2170309	T	C	4256.77	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:165,197:0.54:362
chr3	137843476	rs2246945	G	T	5247.77	.	AC=1;AF=0.500;AN=2;DB;DP=549;set=Intersection	GT:AD:AF:DP	0/1:285,258:0.48:543
chr3	137850003	rs2724691	A	G	2639.77	.	AC=1;AF=0.500;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	0/1:207,131:0.39:338
chr3	137880695	rs9851548	A	G	2579.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:67,105:0.61:172
chr3	137880743	rs2622736	G	A	4095.77	.	AC=1;AF=0.500;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	0/1:185,193:0.51:378
chr3	137881265	rs3732839	T	A	4706.77	.	AC=1;AF=0.500;AN=2;DB;DP=472;set=Intersection	GT:AD:AF:DP	0/1:244,216:0.47:460
chr3	137882377	rs2622734	G	T	842.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:36,34:0.49:70
chr3	137882752	rs2622733	A	G	2130.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:60,92:0.61:152
chr3	137892531	.	G	GA	173.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.038;ClippingRankSum=0.000;DP=174;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.951;QD=1.26;ReadPosRankSum=-0.143;SOR=0.564;set=HC	GT:AD:AF:DP	0/1:110,28:0.20:138
chr3	137907220	.	G	GT	98.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.173;ClippingRankSum=0.000;DP=211;ExcessHet=3.0103;FS=1.816;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=3.046;QD=0.48;ReadPosRankSum=2.186;SOR=0.977;set=HC	GT:AD:AF:DP	0/1:169,37:0.18:206
chr3	137948026	.	G	A	88	.	AC=1;AF=0.500;AN=2;BRF=0.1;FR=0.5000;HP=2;HapScore=2;MGOF=42;MMLQ=28;MQ=60.0;NF=0;NR=8;PP=88;QD=15.3464015684;SC=ATATATATATGTATATGTATA;SbPval=1.0;Source=Platypus;TC=15;TCF=1;TCR=14;TR=8;WE=137948034;WS=137948000;set=Platypus	GT:AD:AF:DP	1/0:7,8:0.53:15
chr3	137958438	rs6778511	C	T	704.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr3	137981439	.	TA	T	360.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.757;ClippingRankSum=0.000;DP=322;ExcessHet=3.0103;FS=2.708;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=4.442;QD=1.31;ReadPosRankSum=0.258;SOR=0.907;set=HC	GT:AD:AF:DP	0/1:204,72:0.26:276
chr3	137982718	rs939453	T	G	4783.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr3	138020275	rs7637162	A	G	1804.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr3	138020677	rs6801411	C	T	1774.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr3	138025136	rs3856636	T	G	5358.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:1,190:0.99:191
chr3	138025396	rs9846480	A	G	2116.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:72,92:0.56:164
chr3	138033181	rs9289556	C	T	12794.77	.	AC=2;AF=1.00;AN=2;DB;DP=475;set=Intersection	GT:AD:AF:DP	1/1:0,471:1.00:471
chr3	138043535	rs71940335	TACACACACAC	T,TAC	1819.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=33.70;SOR=0.968;set=HC	GT:AD:AF:DP	1/2:3,21,30:0.39,0.56:54
chr3	138091701	rs1199333	G	T	904.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:20,36:0.64:56
chr3	138116378	rs371472549	GCT	G	361.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.886;ClippingRankSum=0.000;DB;DP=351;ExcessHet=3.0103;FS=1.597;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.32;ReadPosRankSum=0.204;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:240,34:0.12:274
chr3	138170788	rs13095961	T	G	3670.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:161,167:0.51:328
chr3	138171042	rs4678418	C	T	1417.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:53,57:0.52:110
chr3	138173905	rs56236670	G	A	1338.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:25,51:0.67:76
chr3	138176533	rs66644444	A	T	2017.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:117,99:0.46:216
chr3	138179308	rs67037472	G	A	1489.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:55,66:0.55:121
chr3	138179328	rs6763380	C	T	2137.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:76,89:0.54:165
chr3	138187568	rs1679167	C	T	5346.77	.	AC=1;AF=0.500;AN=2;DB;DP=545;set=Intersection	GT:AD:AF:DP	0/1:278,257:0.48:535
chr3	138189031	rs2347469	T	C	1259.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:53,55:0.51:108
chr3	138189658	rs3813264	A	G	1987.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:98,87:0.47:185
chr3	138193025	.	C	CT	224.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.227;ClippingRankSum=0.000;DP=299;ExcessHet=3.0103;FS=2.035;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.985;QD=0.81;ReadPosRankSum=-1.036;SOR=0.884;set=HC	GT:AD:AF:DP	0/1:228,49:0.18:277
chr3	138195529	rs1679169	C	T	1413.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:58,65:0.53:123
chr3	138213849	rs10593783	ATTTGT	A	1852.73	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:35,49:0.58:84
chr3	138216173	.	T	TA	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.521;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.87;ReadPosRankSum=0.765;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:30,10:0.25:40
chr3	138244400	rs9878436	C	T	1773.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:84,85:0.50:169
chr3	138248256	rs151252525	T	A	1143.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:61,56:0.48:117
chr3	138251302	rs7643973	G	T	612.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:20,26:0.57:46
chr3	138251447	rs10549552	CGGTAT	C	2090.73	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:59,56:0.49:115
chr3	138256252	rs542010	G	A	514.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:30,23:0.43:53
chr3	138289163	rs1673608	T	C	1159.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:69,49:0.42:118
chr3	138289221	rs1673607	C	T	2744.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:173,136:0.44:309
chr3	138329862	rs811322	G	A	2788.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:162,137:0.46:299
chr3	138341284	rs11303336	CT	C	387.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.051;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=3.312;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=0.830;QD=8.81;ReadPosRankSum=-0.129;SOR=0.470;set=HC	GT:AD:AF:DP	0/1:11,33:0.75:44
chr3	138348081	rs470678	C	T	939.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:95,53:0.36:148
chr3	138400782	rs145780817	GA	G	82.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.145;ClippingRankSum=0.000;DB;DP=270;ExcessHet=3.0103;FS=0.674;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=2.049;QD=0.32;ReadPosRankSum=-0.334;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:207,48:0.19:255
chr3	138417989	rs361080	G	A	914.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:30,35:0.54:65
chr3	138433568	rs497900	C	T	5182.77	.	AC=1;AF=0.500;AN=2;DB;DP=554;set=Intersection	GT:AD:AF:DP	0/1:286,258:0.47:544
chr3	138668457	rs141282655	CGGCATTCGAA	C	4554.73	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:171,122:0.42:293
chr3	138724757	rs11924188	C	G	14571.77	.	AC=2;AF=1.00;AN=2;DB;DP=548;set=Intersection	GT:AD:AF:DP	1/1:3,539:0.99:542
chr3	138739617	rs1720230	A	G	559.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr3	138882076	rs9843067	C	T	1010.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:27,46:0.63:73
chr3	138882086	rs13097893	G	A	484.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:41,23:0.36:64
chr3	139065988	rs1610195	C	T	3298.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr3	139066902	rs10755092	A	T	2057.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr3	139068008	rs11706615	T	A	1382.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr3	139068277	rs10935321	G	A	400.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:29,20:0.41:49
chr3	139068992	rs368128942	G	A	2091.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:161,105:0.39:266
chr3	139075644	rs9878548	C	A	342.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr3	139075938	rs7833	C	T	307.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:7,12:0.63:19
chr3	139077527	.	G	GA	180.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.086;ClippingRankSum=0.000;DP=262;ExcessHet=3.0103;FS=0.714;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=3.808;QD=0.73;ReadPosRankSum=0.479;SOR=0.806;set=HC	GT:AD:AF:DP	0/1:196,52:0.21:248
chr3	139081416	rs57549985	TTA	T	423.73	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:28,16:0.36:44
chr3	139088481	rs11717119	T	C	58.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.998;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=2.622;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.67;ReadPosRankSum=-1.110;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:11,5:0.31:16
chr3	139090736	rs7373116	G	A	3621.77	.	AC=1;AF=0.500;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	0/1:169,160:0.49:329
chr3	139098357	rs9831108	A	C	662.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:31,28:0.47:59
chr3	139101921	rs190997087	G	A	218.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:7,9:0.56:16
chr3	139102120	rs7373302	C	A	11714.77	.	AC=2;AF=1.00;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	1/1:0,428:1.00:428
chr3	139108250	rs3215032	C	CTG	5062.73	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr3	139195177	rs2233815	C	T	2511.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:167,125:0.43:292
chr3	139236683	rs2071388	C	T	1921.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:78,77:0.50:155
chr3	139246382	rs295493	A	G	725.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr3	139257545	rs34662123	GC	G	1618.73	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:46,61:0.57:107
chr3	139257603	rs2071387	A	G	2516.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:143,129:0.47:272
chr3	139258411	rs11549984	G	A	5303.77	.	AC=1;AF=0.500;AN=2;DB;DP=486;set=Intersection	GT:AD:AF:DP	0/1:227,254:0.53:481
chr3	139280328	rs35898558	G	GA	3904.73	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr3	139297655	rs10513083	A	G	3539.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr3	139654444	rs9821708	T	C	702.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:22,32:0.59:54
chr3	139654466	rs9821843	T	C	725.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:15,31:0.67:46
chr3	139894697	rs4305391	T	C	1411.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:59,57:0.49:116
chr3	140185294	rs533657	G	A	950.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr3	140185367	rs9631463	G	A	2424.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr3	140281723	rs11714465	C	T	9266.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	1/1:0,338:1.00:338
chr3	140282084	rs4683509	C	G	3016.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr3	140282861	rs10804675	C	T	13273.77	.	AC=2;AF=1.00;AN=2;DB;DP=504;set=Intersection	GT:AD:AF:DP	1/1:0,498:1.00:498
chr3	140285115	rs4683510	T	C	488.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr3	140401693	rs698673	A	G	20807.77	.	AC=2;AF=1.00;AN=2;DB;DP=729;set=Intersection	GT:AD:AF:DP	1/1:0,710:1.00:710
chr3	140675348	.	CT	C	275.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.207;ClippingRankSum=0.000;DP=116;ExcessHet=3.0103;FS=2.436;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.53;ReadPosRankSum=0.191;SOR=1.126;set=HC	GT:AD:AF:DP	0/1:66,43:0.39:109
chr3	140678384	.	T	TA	269.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.067;ClippingRankSum=0.000;DP=186;ExcessHet=3.0103;FS=1.692;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.67;ReadPosRankSum=2.290;SOR=0.487;set=HC	GT:AD:AF:DP	0/1:121,41:0.25:162
chr3	140692486	rs2555707	G	T	611.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr3	140784929	rs6771494	T	C	716.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:19,27:0.59:46
chr3	140785175	rs890529	C	A	6054.77	.	AC=1;AF=0.500;AN=2;DB;DP=661;set=Intersection	GT:AD:AF:DP	0/1:354,303:0.46:657
chr3	140851016	.	G	GT	70.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.166;ClippingRankSum=0.000;DP=98;ExcessHet=3.0103;FS=1.234;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=0.000;QD=0.81;ReadPosRankSum=-0.658;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:70,17:0.20:87
chr3	140979184	rs1511378	T	C	623.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:18,28:0.61:46
chr3	140981426	.	A	G	1166.77	.	AC=1;AF=0.500;AN=2;DP=100;set=Intersection	GT:AD:AF:DP	0/1:44,51:0.54:95
chr3	140997202	.	C	T	5983.77	.	AC=1;AF=0.500;AN=2;DP=545;set=Intersection	GT:AD:AF:DP	0/1:251,288:0.53:539
chr3	140998214	rs13087169	G	A	2485.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:152,124:0.45:276
chr3	141162128	rs62282002	C	G	5968.77	.	AC=1;AF=0.500;AN=2;DB;DP=728;set=Intersection	GT:AD:AF:DP	0/1:418,305:0.42:723
chr3	141162185	rs16851435	T	G	5022.77	.	AC=1;AF=0.500;AN=2;DB;DP=507;set=Intersection	GT:AD:AF:DP	0/1:269,235:0.47:504
chr3	141230886	.	G	GT	77.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.115;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.73;ReadPosRankSum=1.599;SOR=0.559;set=HC	GT:AD:AF:DP	0/1:34,11:0.24:45
chr3	141295778	rs3732869	T	A	1978.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:111,92:0.45:203
chr3	141326602	rs295322	T	C	290.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:24,19:0.44:43
chr3	141327474	rs295323	G	A	4240.77	.	AC=1;AF=0.500;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	0/1:239,209:0.47:448
chr3	141328918	rs295324	T	G	748.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:35,35:0.50:70
chr3	141331222	rs2172471	G	A	825.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:51,44:0.46:95
chr3	141499806	rs115890999	G	A	238.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:9,11:0.55:20
chr3	141535558	rs36009541	A	G	3058.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:128,139:0.52:267
chr3	141535608	rs33928105	C	A	4628.77	.	AC=1;AF=0.500;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	0/1:232,221:0.49:453
chr3	141595883	rs7616510	G	C	1251.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr3	141620991	.	G	A	2752.77	.	AC=1;AF=0.500;AN=2;DP=280;set=Intersection	GT:AD:AF:DP	0/1:131,137:0.51:268
chr3	141625999	rs7622417	G	C	1700.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr3	141626189	rs3838612	C	CGGTA	1266.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr3	141644274	rs1131029	G	C	1293.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr3	141709083	rs6440055	A	G	1006.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:42,51:0.55:93
chr3	141812759	rs9877817	G	A	3573.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr3	141890107	rs13074187	T	C	222.74	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:1,8:0.89:9
chr3	141902018	.	TA	T	94.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.965;ClippingRankSum=0.000;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.44;ReadPosRankSum=0.729;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:50,16:0.24:66
chr3	141904474	rs6785098	C	T	239.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:8,10:0.56:18
chr3	141904977	rs6440065	G	A	2141.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:110,102:0.48:212
chr3	141905253	rs9837628	C	A	1473.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.514;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.946;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.00;ReadPosRankSum=0.965;SOR=0.498;set=HC	GT:AD:AF:DP	0/1:31,36:0.54:67
chr3	141905259	rs9857725	T	G	1473.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.333;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=1.981;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.36;ReadPosRankSum=0.635;SOR=0.489;set=HC	GT:AD:AF:DP	0/1:31,38:0.55:69
chr3	141905261	rs9857726	T	G	1473.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.433;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.945;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.00;ReadPosRankSum=0.567;SOR=0.493;set=HC	GT:AD:AF:DP	0/1:30,37:0.55:67
chr3	141905287	.	T	A	651.77	.	AC=1;AF=0.500;AN=2;DP=74;set=Intersection	GT:AD:AF:DP	0/1:41,33:0.45:74
chr3	141917810	rs74836705	T	C	1786.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:73,78:0.52:151
chr3	141923506	rs9830411	C	T	2893.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.31;SOR=0.767;set=HC	GT:AD:AF:DP	1/1:0,110:1.00:110
chr3	141932356	rs6440072	G	A	16041.77	.	AC=2;AF=1.00;AN=2;DB;DP=612;set=Intersection	GT:AD:AF:DP	1/1:0,604:1.00:604
chr3	141932531	rs11926898	T	C	1056.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:47,41:0.47:88
chr3	141934393	.	C	CA	48	.	AC=1;AF=0.500;AN=2;BRF=0.41;FR=0.5000;HP=11;HapScore=2;MGOF=3;MMLQ=28;MQ=60.0;NF=4;NR=1;PP=48;QD=12.0;SC=AAAACTATTACAAAAAAAAAA;SbPval=0.74;Source=Platypus;TC=21;TCF=16;TCR=5;TR=5;WE=141934401;WS=141934383;set=Platypus	GT:AD:AF:DP	1/0:16,5:0.24:21
chr3	142051147	rs4608715	T	C	588.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr3	142076059	rs3816805	A	G	1058.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr3	142083776	rs3214978	T	TTA	984.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr3	142094816	rs113527448	G	GCACA,GCACACA	2689.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.508;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.06;MQRankSum=0.000;QD=39.55;ReadPosRankSum=0.138;SOR=1.739;set=HC	GT:AD:AF:DP	1/2:1,39,28:0.57,0.41:68
chr3	142122451	rs2306699	T	A	1298.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr3	142151371	rs73238191	A	G	331.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:16,13:0.45:29
chr3	142168331	rs1802904	C	T	14343.77	.	AC=2;AF=1.00;AN=2;DB;DP=543;set=Intersection	GT:AD:AF:DP	1/1:1,538:1.00:539
chr3	142215178	rs7620648	A	C	2081.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr3	142218046	rs115556969	C	T	971.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:66,48:0.42:114
chr3	142222074	rs11916455	C	T	822.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr3	142222284	rs2227931	A	G	3842.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr3	142231062	.	T	TA	370.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.038;ClippingRankSum=0.000;DP=101;ExcessHet=3.0103;FS=4.101;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.001;QD=4.21;ReadPosRankSum=0.862;SOR=1.426;set=HC	GT:AD:AF:DP	0/1:49,39:0.44:88
chr3	142259706	rs201551475	CA	C	100.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.757;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.85;ReadPosRankSum=-0.472;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:92,27:0.23:119
chr3	142272275	rs142950892	A	AAC	3813.73	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:32,134:0.81:166
chr3	142272314	rs9869842	G	A	4250.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr3	142277365	rs199661872	AAAAT	A	10054.73	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr3	142277536	rs2227929	A	G	56865.77	.	AC=2;AF=1.00;AN=2;DB;DP=2218;set=Intersection	GT:AD:AF:DP	1/1:8,2193:1.00:2201
chr3	142277575	rs2227930	A	T	51144.77	.	AC=2;AF=1.00;AN=2;DB;DP=1929;set=Intersection	GT:AD:AF:DP	1/1:5,1911:1.00:1916
chr3	142281612	rs2227928	A	G	9065.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:0,340:1.00:340
chr3	142388513	rs3836386	AATGATG	AATG,A	997.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=35;set=Intersection	GT:AF:DP	1/1:1.00:23
chr3	142408606	rs6793735	G	A	2532.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr3	142413407	rs6789958	C	T	3943.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr3	142521224	rs11382953	C	CT	857.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.575;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.14;MQRankSum=0.000;QD=15.05;ReadPosRankSum=-1.556;SOR=0.642;set=HC	GT:AD:AF:DP	1/1:8,49:0.86:57
chr3	142567327	rs893883	G	A	3178.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:159,146:0.48:305
chr3	142607487	rs1457684	C	G	366.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:14,18:0.56:32
chr3	142607822	.	C	CGCTCACACTGGCAGCAGCGCTG	829.73	.	AC=1;AF=0.500;AN=2;DP=57;set=Intersection	GT:AD:AF:DP	0/1:15,23:0.61:38
chr3	142669479	rs4683440	A	G	2776.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:134,128:0.49:262
chr3	142670467	rs2270767	C	T	453.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:27,20:0.43:47
chr3	142681090	rs2276758	T	G	4936.77	.	AC=1;AF=0.500;AN=2;DB;DP=465;set=Intersection	GT:AD:AF:DP	0/1:228,230:0.50:458
chr3	142681222	rs141024906	G	A	4600.77	.	AC=1;AF=0.500;AN=2;DB;DP=462;set=Intersection	GT:AD:AF:DP	0/1:238,213:0.47:451
chr3	142681642	rs78494654	G	A	6768.77	.	AC=1;AF=0.500;AN=2;DB;DP=552;set=Intersection	GT:AD:AF:DP	0/1:250,299:0.54:549
chr3	142720348	rs766360	G	A	278.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:12,13:0.52:25
chr3	142729433	rs2173599	T	C	153.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:6,7:0.54:13
chr3	142730774	rs2124541	T	G	5557.77	.	AC=1;AF=0.500;AN=2;DB;DP=540;set=Intersection	GT:AD:AF:DP	0/1:257,278:0.52:535
chr3	142752293	rs1449869	G	A	281.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:14,13:0.48:27
chr3	142756907	rs11929440	A	G	349.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:10,17:0.63:27
chr3	142773738	rs10935479	C	T	968.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:38,44:0.54:82
chr3	142985100	rs1046706	G	T	346.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:15,18:0.55:33
chr3	143271176	rs1525862	C	G	660.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:23,32:0.58:55
chr3	143293012	rs6763202	A	G	2187.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:134,112:0.46:246
chr3	143296258	rs35417581	A	C	7854.77	.	AC=1;AF=0.500;AN=2;DB;DP=805;set=Intersection	GT:AD:AF:DP	0/1:417,381:0.48:798
chr3	143297591	rs13076949	A	C	925.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:48,46:0.49:94
chr3	143412268	rs12488981	T	C	1626.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:86,74:0.46:160
chr3	143513975	rs56969315	A	G	1626.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:61,63:0.51:124
chr3	143515899	rs11718136	A	T	238.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:14,11:0.44:25
chr3	143530497	rs72993346	A	G	268.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:17,15:0.47:32
chr3	143567207	rs11714060	A	G	9032.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,318:1.00:318
chr3	143692018	rs2279856	C	G	3298.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:150,160:0.52:310
chr3	145788467	rs6710	T	C	1442.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:47,62:0.57:109
chr3	145788803	rs2305274	T	C	1140.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:49,47:0.49:96
chr3	145790948	rs7639592	A	G	377.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:10,16:0.62:26
chr3	145794776	rs142623177	CTTTA	C	408.73	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:15,12:0.44:27
chr3	145795559	rs9874388	A	G	401.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:18,20:0.53:38
chr3	145796891	rs73010484	T	C	6704.77	.	AC=1;AF=0.500;AN=2;DB;DP=643;set=Intersection	GT:AD:AF:DP	0/1:306,330:0.52:636
chr3	145803138	rs1375583	T	C	1029.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.991;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.977;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.50;ReadPosRankSum=0.704;SOR=0.480;set=HC	GT:AD:AF:DP	0/1:40,31:0.44:71
chr3	145803142	rs1375582	T	A	1035.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.981;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.71;ReadPosRankSum=0.672;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:35,27:0.44:62
chr3	145804524	rs3804668	C	A	85.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.378;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=4.409;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.43;ReadPosRankSum=0.433;SOR=1.863;set=HC	GT:AD:AF:DP	0/1:18,7:0.28:25
chr3	145809750	rs3792341	T	C	706.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:48,35:0.42:83
chr3	145820684	rs3762691	G	A	1326.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:43,62:0.59:105
chr3	145824478	rs9289716	A	G	1955.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:107,88:0.45:195
chr3	145824504	rs7614409	G	A	1415.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:74,61:0.45:135
chr3	145828256	rs3842573	G	GT	3220.73	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:105,105:0.50:210
chr3	145838895	rs4681297	C	T	19146.77	.	AC=2;AF=1.00;AN=2;DB;DP=702;set=Intersection	GT:AD:AF:DP	1/1:0,689:1.00:689
chr3	145840968	rs3804659	C	G	269.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:11,13:0.54:24
chr3	145841294	rs10663012	A	AAAAC	588.73	.	AC=1;AF=0.500;AN=2;DB;DP=41;MQ=60.53;set=Intersection	GT:AD:AF:DP	0/1:14,16:0.53:30
chr3	145841854	rs6802384	T	C	501.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:27,25:0.48:52
chr3	145912299	rs1512902	C	T	1425.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr3	145917761	rs1061409	T	C	4507.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:2,175:0.99:177
chr3	145924632	rs3762688	C	T	554.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr3	145938528	rs3762686	C	A	2057.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr3	145938619	rs3762685	T	C	7041.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr3	145938782	rs9850144	C	T	3514.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr3	145939691	rs3804648	C	T	440.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr3	145939755	rs3840204	C	CA	685.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:4,37:0.90:41
chr3	145939776	rs3804647	T	G	2009.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.41;SOR=1.201;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr3	145940051	rs9821768	A	C	129.10	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:1,6:0.86:7
chr3	146167163	.	C	CA	154.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.705;ClippingRankSum=0.000;DP=223;ExcessHet=3.0103;FS=11.982;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.88;ReadPosRankSum=-0.599;SOR=0.174;set=HC	GT:AD:AF:DP	0/1:138,37:0.21:175
chr3	146177594	.	G	GT	239.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.554;ClippingRankSum=0.000;DP=91;ExcessHet=3.0103;FS=0.947;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.79;ReadPosRankSum=1.544;SOR=0.911;set=HC	GT:AD:AF:DP	0/1:60,26:0.30:86
chr3	146246288	rs2738909	A	G	702.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:24,28:0.54:52
chr3	146303750	rs342902	G	A	468.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr3	146307339	rs56763997	T	A	5036.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr3	146307635	rs343289	C	A	3186.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr3	146311589	rs12107668	C	T	3159.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr3	146311937	rs147223969	CA	C	1983.73	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:1,99:0.99:100
chr3	146312917	rs72988655	G	A	629.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:36,32:0.47:68
chr3	146312941	rs6787813	G	T	1559.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr3	146313036	rs6787741	C	T	672.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr3	146318000	rs16858584	T	A	426.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:19,21:0.53:40
chr3	146322901	rs61435584	A	G	911.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:32,36:0.53:68
chr3	147111779	rs62273364	T	C	3262.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:134,160:0.54:294
chr3	147111904	.	C	CCTCT	472.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.163;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.07;MQRankSum=2.916;QD=12.12;ReadPosRankSum=-0.531;SOR=0.507;set=HC	GT:AD:AF:DP	0/1:21,18:0.46:39
chr3	147113586	rs73004638	A	T	1107.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:30,44:0.59:74
chr3	147121751	rs6766244	C	T	2446.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:145,121:0.45:266
chr3	148459395	rs5182	C	T	5142.77	.	AC=1;AF=0.500;AN=2;DB;DP=531;set=Intersection	GT:AD:AF:DP	0/1:279,242:0.46:521
chr3	148459988	rs5186	A	C	3526.77	.	AC=1;AF=0.500;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	0/1:197,164:0.45:361
chr3	148558447	rs2291671	G	A	1142.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:67,51:0.43:118
chr3	148562310	rs1059502	G	A	4663.77	.	AC=1;AF=0.500;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	0/1:189,215:0.53:404
chr3	148562397	rs13318851	G	C	11287.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.502;ClippingRankSum=0.000;DB;DP=610;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.81;ReadPosRankSum=0.206;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:304,296:0.49:600
chr3	148562397	.	GAG	CAA	2944	.	AC=1;AF=0.500;AN=2;BRF=0.46;FR=0.5000;HP=2;HapScore=1;MGOF=8;MMLQ=26;MQ=60.0;NF=105;NR=95;PP=2944;QD=20;SC=AATACTGAGAGAGGCTGATGA;SbPval=0.41;Source=Platypus;TC=427;TCF=235;TCR=192;TR=200;WE=148562407;WS=148562387;set=Platypus	GT:AD:AF:DP	1/0:227,200:0.47:427
chr3	148562399	rs13318853	G	A	11287.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.292;ClippingRankSum=0.000;DB;DP=611;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.81;ReadPosRankSum=0.655;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:307,293:0.49:600
chr3	148575156	rs2331407	C	T	2482.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr3	148575441	rs1356259	C	T	3026.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.77;SOR=1.365;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr3	148575476	rs3044024	C	CAA	888.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.265;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.69;ReadPosRankSum=-0.992;SOR=0.643;set=HC	GT:AD:AF:DP	1/1:1,35:0.97:36
chr3	148583231	.	C	CT	187.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.109;ClippingRankSum=0.000;DP=454;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=2.336;QD=0.47;ReadPosRankSum=0.841;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:336,66:0.16:402
chr3	148597482	rs1032465	T	G	2100.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr3	148597612	rs12489516	C	T	9820.77	.	AC=2;AF=1.00;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	1/1:0,361:1.00:361
chr3	148714841	rs151126996	TTG	T	635.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.284;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.16;ReadPosRankSum=0.916;SOR=1.109;set=HC	GT:AD:AF:DP	0/1:9,26:0.74:35
chr3	148756825	rs6764352	G	A	4804.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr3	148786108	rs812249	C	T	1779.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:72,83:0.54:155
chr3	148868292	rs150286093	GC	G	448.73	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:11,16:0.59:27
chr3	148868361	rs2689232	C	T	970.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:48,43:0.47:91
chr3	148872987	rs6440589	G	A	1667.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:108,89:0.45:197
chr3	148879878	rs61615092	A	G	750.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:28,32:0.53:60
chr3	148881673	rs3732557	C	T	687.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:55,36:0.40:91
chr3	148885077	rs2681092	C	T	1416.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:26,55:0.68:81
chr3	148885779	rs11426099	A	AT	301.73	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:12,19:0.61:31
chr3	148885851	rs2681096	G	A	389.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr3	148890105	.	T	TCACA	386	.	AC=1;AF=0.500;AN=2;BRF=0.27;FR=0.5000;HP=1;HapScore=3;MGOF=34;MMLQ=20;MQ=60.4;NF=0;NR=12;PP=386;QD=32.4166666667;SC=ATTTTATATATCACACACACA;SbPval=1.0;Source=Platypus;TC=27;TCF=0;TCR=27;TR=12;WE=148890113;WS=148890095;set=Platypus	GT:AD:AF:DP	1/0:15,12:0.44:27
chr3	148896430	rs16861582	A	G	4468.77	.	AC=1;AF=0.500;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	0/1:196,212:0.52:408
chr3	148897498	rs146148959	TAC	T	384.52	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.760;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=2.539;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.645;QD=14.79;ReadPosRankSum=-1.456;SOR=1.911;set=HC	GT:AD:AF:DP	0/1:6,20:0.77:26
chr3	148901406	rs143522213	AC	A	238.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.992;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.18;ReadPosRankSum=0.406;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:7,19:0.73:26
chr3	148901407	rs34861155	C	A	50.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.921;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.95;ReadPosRankSum=-0.116;SOR=0.829;set=HC	GT:AD:AF:DP	0/1:19,7:0.27:26
chr3	148916235	rs701753	T	A	9454.77	.	AC=2;AF=1.00;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	1/1:0,338:1.00:338
chr3	149050925	rs1526786	T	C	3237.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:147,145:0.50:292
chr3	149087404	rs8479	T	C	318.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr3	149087714	rs6776940	T	C	376.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr3	149093238	rs4771	A	G	4023.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr3	149192851	rs143312618	G	GC	12064.73	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:0,328:1.00:328
chr3	149193684	rs1802837	T	C	10555.77	.	AC=2;AF=1.00;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	1/1:3,403:0.99:406
chr3	149243694	rs9854499	G	C	898.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:35,40:0.53:75
chr3	149258970	rs5853413	CA	C	443.73	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:21,23:0.52:44
chr3	149290605	rs140400179	CA	C	499.73	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:37,36:0.49:73
chr3	149374572	.	T	TCACA	134.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.550;ClippingRankSum=0.000;DP=59;ExcessHet=3.0103;FS=5.196;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=0.507;QD=3.45;ReadPosRankSum=0.752;SOR=2.030;set=HC	GT:AD:AF:DP	0/1:32,7:0.18:39
chr3	149374574	rs142250733	T	A	150.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.475;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=7.811;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=0.571;QD=4.31;ReadPosRankSum=1.836;SOR=2.546;set=HC	GT:AD:AF:DP	0/1:28,7:0.20:35
chr3	149374576	rs145173717	T	A	138.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.424;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=7.811;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=0.571;QD=3.65;ReadPosRankSum=1.600;SOR=2.546;set=HC	GT:AD:AF:DP	0/1:31,7:0.18:38
chr3	149374578	rs151019600	T	A	698.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.648;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=5.226;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=0.605;QD=12.70;ReadPosRankSum=1.895;SOR=2.513;set=HC	GT:AD:AF:DP	0/1:31,24:0.44:55
chr3	149459341	rs7633238	A	G	5920.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr3	149468530	rs9843784	T	G	2956.77	.	AC=1;AF=0.500;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	0/1:169,147:0.47:316
chr3	149479301	rs954714	C	T	4782.77	.	AC=1;AF=0.500;AN=2;DB;DP=526;set=Intersection	GT:AD:AF:DP	0/1:279,242:0.46:521
chr3	149481974	rs4681189	G	A	883.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:20,34:0.63:54
chr3	149485293	rs7610425	T	C	6903.77	.	AC=1;AF=0.500;AN=2;DB;DP=663;set=Intersection	GT:AD:AF:DP	0/1:338,312:0.48:650
chr3	149488309	rs7630033	A	G	1615.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:101,81:0.45:182
chr3	149488442	rs7630153	A	G	6885.77	.	AC=1;AF=0.500;AN=2;DB;DP=797;set=Intersection	GT:AD:AF:DP	0/1:423,356:0.46:779
chr3	149510262	rs4681554	A	G	746.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:30,33:0.52:63
chr3	149564075	rs6440641	A	G	433.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:24,21:0.47:45
chr3	149613232	rs143625944	ATT	A	797.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.522;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=9.348;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.62;ReadPosRankSum=1.336;SOR=1.700;set=HC	GT:AD:AF:DP	0/1:11,37:0.77:48
chr3	149679148	.	TA	T	301.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.381;ClippingRankSum=0.000;DP=282;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=1.810;QD=1.15;ReadPosRankSum=0.369;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:200,62:0.24:262
chr3	149679245	rs1043642	C	T	933.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:56,45:0.45:101
chr3	149686367	rs61268501	AC	A	3197.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.178;ClippingRankSum=0.000;DB;DP=324;ExcessHet=3.0103;FS=2.097;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.28;ReadPosRankSum=-0.048;SOR=0.562;set=HC	GT:AD:AF:DP	0/1:97,214:0.69:311
chr3	149686368	rs68033203	C	A	374.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.734;ClippingRankSum=0.000;DB;DP=324;ExcessHet=3.0103;FS=2.381;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.21;ReadPosRankSum=0.153;SOR=0.874;set=HC	GT:AD:AF:DP	0/1:242,69:0.22:311
chr3	150128154	rs61734437	T	C	9409.77	.	AC=1;AF=0.500;AN=2;DB;DP=864;set=Intersection	GT:AD:AF:DP	0/1:418,437:0.51:855
chr3	150128484	rs3749400	C	A	3549.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:123,157:0.56:280
chr3	150128994	rs34647320	T	G	8050.77	.	AC=1;AF=0.500;AN=2;DB;DP=867;set=Intersection	GT:AD:AF:DP	0/1:459,399:0.47:858
chr3	150129171	rs3840253	A	AT	2127.73	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:89,85:0.49:174
chr3	150262318	rs1533816	C	T	1750.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:63,76:0.55:139
chr3	150270077	rs12330655	C	G	204.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:24,12:0.33:36
chr3	150276151	rs200333608	A	AT	80.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.136;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=1.493;MLEAC=1;MLEAF=0.500;MQ=63.02;MQRankSum=5.470;QD=2.31;ReadPosRankSum=0.766;SOR=1.091;set=HC	GT:AD:AF:DP	0/1:24,11:0.31:35
chr3	150276153	rs11379788	C	CT,T	352.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=35;set=Intersection	GT:AF:DP	1/2:0.43,0.40:35
chr3	150282061	rs147595145	CT	C	52.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.050;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.68;ReadPosRankSum=1.407;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:58,19:0.25:77
chr3	150282211	rs62269102	C	G	367.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:16,18:0.53:34
chr3	150283050	rs73001341	C	A	2367.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:82,108:0.57:190
chr3	150285520	rs2293151	T	C	1054.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:45,52:0.54:97
chr3	150285664	rs2293150	A	G	3841.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:137,178:0.57:315
chr3	150286088	rs62283993	T	A	4226.77	.	AC=1;AF=0.500;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	0/1:203,204:0.50:407
chr3	150286210	rs1915945	A	T	582.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:24,24:0.50:48
chr3	150332199	rs1568586	T	G	133.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.898;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=5.653;MLEAC=1;MLEAF=0.500;MQ=60.42;MQRankSum=-0.550;QD=5.57;ReadPosRankSum=-0.668;SOR=2.683;set=HC	GT:AD:AF:DP	0/1:17,7:0.29:24
chr3	150332261	rs76738873	A	C	925.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:22,42:0.66:64
chr3	150340114	rs2177148	A	G	174.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr3	150342397	rs17440940	C	T	215.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:7,9:0.56:16
chr3	150384807	rs6440691	T	G	7985.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr3	150387059	rs17215176	A	G	1107.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:76,57:0.43:133
chr3	150391810	rs73003074	A	C	5543.77	.	AC=1;AF=0.500;AN=2;DB;DP=596;set=Intersection	GT:AD:AF:DP	0/1:307,284:0.48:591
chr3	150403749	rs4680107	T	C	1871.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:61,77:0.56:138
chr3	150420057	rs63679260	C	CT	33.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.992;ClippingRankSum=-0.000;DB;DP=38;ExcessHet=3.0103;FS=7.068;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.22;ReadPosRankSum=0.439;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:3,5:0.62:8
chr3	150420588	rs10663389	G	GTTAAA	13095.73	.	AC=2;AF=1.00;AN=2;DB;DP=314;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.10;QD=46.11;SOR=0.960;set=HC	GT:AD:AF:DP	1/1:0,284:1.00:284
chr3	150420606	rs9824030	T	G	1127.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.170;ClippingRankSum=0.000;DB;DP=302;ExcessHet=3.0103;FS=14.322;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.389;QD=4.21;ReadPosRankSum=5.374;SOR=0.285;set=HC	GT:AD:AF:DP	0/1:169,99:0.37:268
chr3	150420608	rs9879627	G	T,GT	1949.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.233;ClippingRankSum=0.000;DB;DP=300;ExcessHet=3.0103;FS=1.277;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.98;MQRankSum=-0.776;QD=8.48;ReadPosRankSum=0.305;SOR=0.860;set=HC	GT:AD:AF:DP	1/2:56,95,79:0.41,0.34:230
chr3	150420676	rs10663390	A	AGTGT	1203.73	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:36,37:0.51:73
chr3	150420781	rs71676608	CAG	C,CAGAGAG	760.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.030;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=26.23;ReadPosRankSum=-0.869;SOR=0.693;set=HC	GT:AD:AF:DP	1/2:1,15,13:0.52,0.45:29
chr3	150421419	rs17281287	G	A	3365.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:129,158:0.55:287
chr3	150480104	.	CT	C	666.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.436;ClippingRankSum=0.000;DP=112;ExcessHet=3.0103;FS=4.107;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.17;ReadPosRankSum=2.443;SOR=0.294;set=HC	GT:AD:AF:DP	0/1:53,55:0.51:108
chr3	150603248	rs57919280	G	GAAAAGC	12626.73	.	AC=1;AF=0.500;AN=2;DB;DP=711;set=Intersection	GT:AD:AF:DP	0/1:360,328:0.48:688
chr3	150658373	rs7616719	A	G	1420.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:101,70:0.41:171
chr3	150690439	rs3796242	T	A	5645.77	.	AC=1;AF=0.500;AN=2;DB;DP=574;set=Intersection	GT:AD:AF:DP	0/1:307,262:0.46:569
chr3	150690566	rs3796240	T	C	1333.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:35,49:0.58:84
chr3	150804908	rs7653870	T	G	963.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:43,40:0.48:83
chr3	150883600	rs2567322	C	T	3829.77	.	AC=1;AF=0.500;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	0/1:175,178:0.50:353
chr3	150910640	rs1231520	G	C	933.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:39,42:0.52:81
chr3	151011944	rs12492699	A	C	1643.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:54,73:0.57:127
chr3	151011969	rs1048408	G	A	4302.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr3	151012497	rs2242353	T	C	23007.77	.	AC=2;AF=1.00;AN=2;DB;DP=828;set=Intersection	GT:AD:AF:DP	1/1:0,816:1.00:816
chr3	151045661	rs1491980	G	C	725.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:29,30:0.51:59
chr3	151046308	rs1466684	G	A	3155.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:139,146:0.51:285
chr3	151056598	rs6809699	A	C	3373.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:124,153:0.55:277
chr3	151067730	rs1565574	C	T	1203.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:44,47:0.52:91
chr3	151073033	rs7615865	T	C	2595.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:113,112:0.50:225
chr3	151073937	rs1994730	T	C	1973.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:70,93:0.57:163
chr3	151085578	rs3732764	C	A	4208.77	.	AC=1;AF=0.500;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	0/1:211,201:0.49:412
chr3	151128973	rs16863368	C	G	3857.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr3	151128995	rs188803984	A	G	1479.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:82,72:0.47:154
chr3	151131183	rs2276764	G	A	751.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:34,31:0.48:65
chr3	151143354	rs10653830	T	TTG	1879.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.444;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.11;ReadPosRankSum=0.635;SOR=0.615;set=HC	GT:AD:AF:DP	0/1:10,62:0.86:72
chr3	151143447	rs6440742	G	T	6676.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:1,256:1.00:257
chr3	151147968	rs6772196	C	T	4187.77	.	AC=1;AF=0.500;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	0/1:172,183:0.52:355
chr3	151150422	rs3732771	C	T	2714.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:152,130:0.46:282
chr3	151154666	rs2172250	T	C	5753.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr3	151155248	rs16863390	A	C	6932.77	.	AC=1;AF=0.500;AN=2;DB;DP=714;set=Intersection	GT:AD:AF:DP	0/1:369,330:0.47:699
chr3	151155620	rs6781302	G	A	6594.77	.	AC=1;AF=0.500;AN=2;DB;DP=619;set=Intersection	GT:AD:AF:DP	0/1:307,304:0.50:611
chr3	151155758	rs9864533	A	C	6720.77	.	AC=1;AF=0.500;AN=2;DB;DP=627;set=Intersection	GT:AD:AF:DP	0/1:290,323:0.53:613
chr3	151156454	rs139512538	T	C	1211.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:64,57:0.47:121
chr3	151156477	rs12635091	T	C	1079.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:39,40:0.51:79
chr3	151158184	rs937126	A	T	1338.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:2,63:0.97:65
chr3	151158265	rs937125	G	A	2638.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:137,123:0.47:260
chr3	151158502	rs10663807	T	TAG	1285.73	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:33,34:0.51:67
chr3	151163173	rs34674218	G	A	6183.77	.	AC=1;AF=0.500;AN=2;DB;DP=639;set=Intersection	GT:AD:AF:DP	0/1:343,291:0.46:634
chr3	151165678	rs9871952	T	C	6035.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr3	151166422	rs6798252	C	T	15242.77	.	AC=2;AF=1.00;AN=2;DB;DP=566;set=Intersection	GT:AD:AF:DP	1/1:0,557:1.00:557
chr3	151171439	rs7619322	A	C	12874.77	.	AC=2;AF=1.00;AN=2;DB;DP=483;set=Intersection	GT:AD:AF:DP	1/1:1,478:1.00:479
chr3	151171542	rs7621591	A	G	6509.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr3	151463421	rs1972977	G	T	4117.77	.	AC=1;AF=0.500;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	0/1:213,199:0.48:412
chr3	151531894	rs2293004	C	T	3048.77	.	AC=1;AF=0.500;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	0/1:193,153:0.44:346
chr3	151538304	.	C	CTTTTT	433.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.451;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=1.978;MLEAC=1;MLEAF=0.500;MQ=60.62;MQRankSum=0.165;QD=19.72;ReadPosRankSum=-1.107;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:6,16:0.73:22
chr3	151542408	rs148745568	AAAAC	A	2158.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr3	151542732	rs62272917	A	C	666.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.648;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=-1.149;QD=9.95;ReadPosRankSum=0.348;SOR=0.375;set=HC	GT:AD:AF:DP	0/1:40,27:0.40:67
chr3	151542737	rs13098550	G	A	2385.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr3	151542749	rs151253803	CTATT	C	2233.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr3	151542763	rs377047578	A	G	451.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:27,19:0.41:46
chr3	151545318	rs2410837	A	T	1301.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.49;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr3	151545321	rs11306821	GT	G	1312.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr3	151545323	rs62272918	T	G	1321.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr3	151545601	rs1803155	G	A	14626.77	.	AC=2;AF=1.00;AN=2;DB;DP=556;set=Intersection	GT:AD:AF:DP	1/1:1,548:1.00:549
chr3	151546041	rs1042201	G	A	346.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:15,14:0.48:29
chr3	151599393	rs13079080	C	T	2960.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr3	151987506	rs148863620	TTTC	T	766.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.142;ClippingRankSum=0.000;DB;DP=232;ExcessHet=3.0103;FS=6.651;MLEAC=1;MLEAF=0.500;MQ=60.93;MQRankSum=-0.814;QD=5.11;ReadPosRankSum=-0.481;SOR=1.350;set=HC	GT:AD:AF:DP	0/1:89,61:0.41:150
chr3	152018223	rs17368446	T	G	1448.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:41,60:0.59:101
chr3	153839866	rs12493885	G	C	15405.77	.	AC=2;AF=1.00;AN=2;DB;DP=567;set=Intersection	GT:AD:AF:DP	1/1:1,559:1.00:560
chr3	153839959	rs59508481	C	T	6341.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.732;ClippingRankSum=0.000;DB;DP=564;ExcessHet=3.0103;FS=2.418;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.39;ReadPosRankSum=-0.003;SOR=0.855;set=HC	GT:AD:AF:DP	0/1:280,277:0.50:557
chr3	153839959	.	CT	TC	2944	.	AC=1;AF=0.500;AN=2;BRF=0.47;FR=0.5000;HP=1;HapScore=2;MGOF=11;MMLQ=24;MQ=60.0;NF=98;NR=83;PP=2944;QD=20;SC=AGGGACGCTCCTCGCAGCGCA;SbPval=0.64;Source=Platypus;TC=380;TCF=199;TCR=181;TR=181;WE=153839968;WS=153839949;set=Platypus	GT:AD:AF:DP	0/1:199,181:0.48:380
chr3	153839960	rs12497267	T	C	20384.77	.	AC=2;AF=1.00;AN=2;DB;DP=565;set=Intersection	GT:AD:AF:DP	1/1:0,559:1.00:559
chr3	153840162	rs13073165	C	T	11028.77	.	AC=1;AF=0.500;AN=2;DB;DP=1032;set=Intersection	GT:AD:AF:DP	0/1:514,513:0.50:1027
chr3	153840389	rs13096373	T	C	8783.77	.	AC=1;AF=0.500;AN=2;DB;DP=789;set=Intersection	GT:AD:AF:DP	0/1:375,401:0.52:776
chr3	153847582	rs1626280	T	A	1165.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:52,52:0.50:104
chr3	153870511	rs1727956	G	A	493.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:15,19:0.56:34
chr3	153943734	.	G	T	4664.77	.	AC=1;AF=0.500;AN=2;DP=552;set=Intersection	GT:AD:AF:DP	0/1:312,236:0.43:548
chr3	153970796	rs355752	A	G	10903.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.63;SOR=1.339;set=HC	GT:AD:AF:DP	1/1:0,306:1.00:306
chr3	153970796	.	AGAGAAT	GGAGAAA,GGAGAAT	2017	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.4;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=4;MMLQ=28;MQ=60.0;NF=72,154;NR=33,77;PP=1893,2017;QD=18.5377892844;SC=ATACCTCTCTAGAGAATCTCT;SbPval=0.64;Source=Platypus;TC=236;TCF=156;TCR=80;TR=105,231;WE=153970810;WS=153970786;set=Platypus	GT:AF:DP	0/1:0.44:236
chr3	153970802	rs71308481	T	A	3187.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.871;ClippingRankSum=0.000;DB;DP=340;ExcessHet=3.0103;FS=0.407;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.57;ReadPosRankSum=-0.715;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:181,152:0.46:333
chr3	153972500	rs355749	T	C	10486.77	.	AC=2;AF=1.00;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	1/1:0,400:1.00:400
chr3	153973408	rs3172332	T	C	388.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:17,19:0.53:36
chr3	153994502	rs355787	TG	CA	3595.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;JOINED;set=Intersection	GT:AD:AF:DP	0/1:76,92:0.55:168
chr3	154002357	rs200020002	A	AT	684.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.178;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=4.280;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=1.705;QD=6.85;ReadPosRankSum=-0.739;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:50,50:0.50:100
chr3	154007682	rs355758	G	C	1054.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:67,54:0.45:121
chr3	154010515	rs146770800	AACACAC	A,AAC	2839.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=33.81;SOR=8.349;set=HC	GT:AD:AF:DP	1/2:0,60,24:0.71,0.29:84
chr3	154018690	rs3732652	G	A	4058.77	.	AC=1;AF=0.500;AN=2;DB;DP=442;set=Intersection	GT:AD:AF:DP	0/1:234,198:0.46:432
chr3	154021063	rs355756	G	A	260.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:17,14:0.45:31
chr3	154034043	rs3817166	T	C	762.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:43,31:0.42:74
chr3	154802920	rs4607069	T	C	449.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:14,24:0.63:38
chr3	154834379	.	GTA	G	312.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.898;ClippingRankSum=0.000;DP=217;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.62;ReadPosRankSum=-0.877;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:162,31:0.16:193
chr3	154857897	rs10935999	C	T	1962.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr3	154866299	rs199657102	C	T	1152.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:33,43:0.57:76
chr3	154866453	rs1436633	T	C	10218.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	1/1:2,379:0.99:381
chr3	154866545	rs1436632	A	C	4584.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:2,178:0.99:180
chr3	154878158	rs35450782	GA	G	1050.73	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:31,32:0.51:63
chr3	154886278	rs3736187	T	C	2222.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:114,110:0.49:224
chr3	154890206	rs3816803	G	A	708.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:60,35:0.37:95
chr3	154890512	rs11445808	C	CT	1219.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.074;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=1.062;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.000;QD=11.40;ReadPosRankSum=-0.106;SOR=0.536;set=HC	GT:AD:AF:DP	0/1:27,80:0.75:107
chr3	154890530	rs3816802	A	C	1057.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:57,52:0.48:109
chr3	154898127	rs16824656	A	G	1861.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:86,82:0.49:168
chr3	154898407	rs701109	C	T	2185.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr3	155205993	rs368444721	C	CT	829.73	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:42,55:0.57:97
chr3	155212325	rs3214639	G	GA	2060.73	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:110,106:0.49:216
chr3	155241593	rs9840061	A	G	2252.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:135,111:0.45:246
chr3	155241740	rs9840234	A	G	7868.77	.	AC=1;AF=0.500;AN=2;DB;DP=1018;set=Intersection	GT:AD:AF:DP	0/1:594,413:0.41:1007
chr3	155271825	rs359549	G	A	2300.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:102,101:0.50:203
chr3	155314034	rs359569	A	G	1669.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:100,83:0.45:183
chr3	155314296	rs359570	A	G	293.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:9,12:0.57:21
chr3	155481609	rs7653384	G	A	5242.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;MQ=60.05;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr3	155485302	rs358733	C	T	3404.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr3	155522044	rs63242260	ATAT	A	1317.73	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:24,34:0.59:58
chr3	155523375	rs10563990	GCGCA	G	1623.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr3	155551206	rs7649631	C	T	2085.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:122,98:0.45:220
chr3	155551894	rs422497	A	G	774.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:47,33:0.41:80
chr3	155611557	rs6441026	T	G	1322.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr3	155652860	rs75672038	C	T	6437.77	.	AC=1;AF=0.500;AN=2;DB;DP=670;set=Intersection	GT:AD:AF:DP	0/1:345,319:0.48:664
chr3	155654432	rs3772113	T	A	807.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr3	155836231	rs13093154	C	T	1378.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:45,62:0.58:107
chr3	155991348	rs1160221	G	T	14563.77	.	AC=2;AF=1.00;AN=2;DB;DP=550;set=Intersection	GT:AD:AF:DP	1/1:0,545:1.00:545
chr3	155991410	rs13093003	C	G	3066.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:118,142:0.55:260
chr3	156249214	rs2280031	T	C	3230.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:148,162:0.52:310
chr3	156249407	rs2280030	G	C	279.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:20,15:0.43:35
chr3	156261110	rs1983206	T	C	970.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:55,49:0.47:104
chr3	156262232	rs6792998	C	G	1018.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:61,52:0.46:113
chr3	156262396	rs35584247	G	GA	75.73	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr3	156266642	rs6809188	C	T	4113.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr3	156266880	rs3773716	C	T	282.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:13,14:0.52:27
chr3	156398895	rs62276620	A	T	1790.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:40,76:0.66:116
chr3	156399180	rs3851992	G	A	467.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:47,22:0.32:69
chr3	156413615	rs10631452	C	CTT	1667.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.229;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=1.211;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.19;ReadPosRankSum=1.390;SOR=0.421;set=HC	GT:AD:AF:DP	0/1:16,87:0.84:103
chr3	156421525	rs34277251	G	T	733.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:14,33:0.70:47
chr3	156431750	rs61733487	A	G	4139.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr3	156432015	rs149636271	A	G	2746.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:103,124:0.55:227
chr3	156544488	rs62273902	C	G	7627.77	.	AC=1;AF=0.500;AN=2;DB;DP=722;set=Intersection	GT:AD:AF:DP	0/1:363,350:0.49:713
chr3	156544576	rs62273904	T	C	5545.77	.	AC=1;AF=0.500;AN=2;DB;DP=544;set=Intersection	GT:AD:AF:DP	0/1:265,268:0.50:533
chr3	156544584	rs344071	C	T	5780.77	.	AC=1;AF=0.500;AN=2;DB;DP=522;set=Intersection	GT:AD:AF:DP	0/1:253,260:0.51:513
chr3	156570521	rs111501048	T	TA	520.73	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:44,31:0.41:75
chr3	156570680	rs62273959	G	A	1222.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:57,61:0.52:118
chr3	156570870	rs62275160	G	T	133.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:3,7:0.70:10
chr3	156642333	rs77154496	G	A	358.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:6,15:0.71:21
chr3	156645196	rs200029200	A	AT	133.73	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:8,10:0.56:18
chr3	156697097	rs6780427	G	A	1470.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:59,72:0.55:131
chr3	156864398	rs370594663	TAAAAAA	T	1639.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.242;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.76;ReadPosRankSum=2.167;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:34,49:0.59:83
chr3	156864419	.	TA	T	1002.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.080;ClippingRankSum=0.000;DP=117;ExcessHet=3.0103;FS=3.684;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=1.237;QD=8.95;ReadPosRankSum=1.569;SOR=0.404;set=HC	GT:AD:AF:DP	0/1:46,66:0.59:112
chr3	156864551	rs6783595	T	A	1205.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:60,58:0.49:118
chr3	156867776	rs377312008	G	GAA	1844.73	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:69,69:0.50:138
chr3	156870059	rs73154633	C	T	1367.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:70,70:0.50:140
chr3	156870816	rs41272613	A	G	6205.77	.	AC=1;AF=0.500;AN=2;DB;DP=628;set=Intersection	GT:AD:AF:DP	0/1:324,295:0.48:619
chr3	156876502	rs6441114	G	A	628.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:23,28:0.55:51
chr3	156876574	rs6441115	A	G	2267.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:90,104:0.54:194
chr3	156876803	rs6441116	T	G	1189.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:71,55:0.44:126
chr3	156877276	rs59715654	CAA	C	6262.73	.	AC=1;AF=0.500;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	0/1:207,168:0.45:375
chr3	156877357	rs10936061	T	C	1895.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:97,80:0.45:177
chr3	156877530	rs12635088	G	A	416.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:31,19:0.38:50
chr3	156978919	rs11398653	A	AT	7233.73	.	AC=1;AF=0.500;AN=2;DB;DP=569;set=Intersection	GT:AD:AF:DP	0/1:324,242:0.43:566
chr3	156983273	rs3749214	A	G	1605.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:80,69:0.46:149
chr3	156983414	rs7652298	T	C	4112.77	.	AC=1;AF=0.500;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	0/1:214,200:0.48:414
chr3	157004323	rs4680353	A	C	5554.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:1,212:1.00:213
chr3	157082082	rs3833585	C	CAA	1676.73	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:40,43:0.52:83
chr3	157817517	rs9833383	A	G	210.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:19,9:0.32:28
chr3	157820423	rs4462902	C	T	729.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:35,35:0.50:70
chr3	157822669	rs1915940	T	C	60.84	.	AC=1;AF=0.500;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	0/1:1,3:0.75:4
chr3	157841531	rs6789448	G	A	1427.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr3	157849957	rs1609526	C	T	1276.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr3	157943469	rs116387663	G	C	989.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:70,53:0.43:123
chr3	158072776	rs5853823	TA	T	2279.73	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:15,130:0.90:145
chr3	158300732	rs2566341	A	G	767.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr3	158306627	rs1075551	A	G	4783.77	.	AC=1;AF=0.500;AN=2;DB;DP=486;set=Intersection	GT:AD:AF:DP	0/1:237,235:0.50:472
chr3	158308875	rs2566339	T	C	3874.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.07;QD=25.66;SOR=0.706;set=HC	GT:AD:AF:DP	1/1:0,151:1.00:151
chr3	158308948	rs11314613	CT	C	215.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.780;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=0.000;QD=4.31;ReadPosRankSum=-0.717;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:25,25:0.50:50
chr3	158310153	rs6771248	A	G	1338.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:44,56:0.56:100
chr3	158310391	rs34234841	CAGTT	C	2245.73	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:120,64:0.35:184
chr3	158310483	rs6780477	G	T	757.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:23,32:0.58:55
chr3	158314810	rs45471897	C	G	299.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:22,16:0.42:38
chr3	158314846	rs55999561	A	G	244.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:12,12:0.50:24
chr3	158318015	rs2639656	C	T	955.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.55;SOR=1.371;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr3	158320597	rs4875	T	C	288.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:21,15:0.42:36
chr3	158320703	rs15967	C	A	185.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:24,12:0.33:36
chr3	158362391	rs28372852	C	T	846.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:76,42:0.36:118
chr3	158362441	rs1864507	T	C	2092.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:128,102:0.44:230
chr3	158362526	rs1864506	A	G	3887.77	.	AC=1;AF=0.500;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	0/1:193,188:0.49:381
chr3	158362588	rs1864505	C	G	2898.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:167,144:0.46:311
chr3	158366900	rs2303909	G	A	1134.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:76,56:0.42:132
chr3	158367837	rs56167308	C	T	1268.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:58,61:0.51:119
chr3	158369789	rs56362855	T	A	1369.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.504;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=1.452;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.44;ReadPosRankSum=-0.826;SOR=0.433;set=HC	GT:AD:AF:DP	0/1:31,36:0.54:67
chr3	158369798	rs9810874	A	G	1437.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.496;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=1.138;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.20;ReadPosRankSum=1.082;SOR=0.451;set=HC	GT:AD:AF:DP	0/1:39,40:0.51:79
chr3	158372477	rs62286656	C	T	793.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:61,43:0.41:104
chr3	158372502	rs9884039	T	C	616.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:44,33:0.43:77
chr3	158384068	rs7628497	A	G	2281.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.281;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.81;ReadPosRankSum=-0.632;SOR=0.475;set=HC	GT:AD:AF:DP	0/1:101,110:0.52:211
chr3	158384920	rs9875895	C	T	229.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:7,11:0.61:18
chr3	158386737	rs1492909	C	T	572.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:27,25:0.48:52
chr3	158387487	rs6441215	T	C	748.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:39,29:0.43:68
chr3	158388721	rs56093991	C	CAAAGAAA	477.73	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:24,11:0.31:35
chr3	158388780	rs8455	T	C	771.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:57,36:0.39:93
chr3	158390395	rs9841	A	T	890.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:23,35:0.60:58
chr3	158399757	rs11436468	A	AT	1419.73	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:68,92:0.57:160
chr3	158407930	rs34920045	CT	C	327.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.915;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=0.812;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=2.325;QD=1.92;ReadPosRankSum=-0.470;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:120,51:0.30:171
chr3	158409093	rs145803239	C	CA	1820.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.043;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=0.564;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.84;ReadPosRankSum=0.038;SOR=0.642;set=HC	GT:AD:AF:DP	0/1:79,89:0.53:168
chr3	158409262	rs1047355	C	T	651.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:36,30:0.45:66
chr3	158422506	rs4680457	G	A	1076.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:53,49:0.48:102
chr3	158428642	rs2307064	G	A	6646.77	.	AC=1;AF=0.500;AN=2;DB;DP=650;set=Intersection	GT:AD:AF:DP	0/1:319,320:0.50:639
chr3	158431508	rs2279562	A	G	2786.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:104,122:0.54:226
chr3	158431702	rs2279561	A	T	2634.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:102,123:0.55:225
chr3	158449965	rs6441223	T	C	928.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:43,41:0.49:84
chr3	158450178	rs6786423	A	G	2317.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:137,117:0.46:254
chr3	158520011	rs28364680	C	T	3258.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:157,153:0.49:310
chr3	158520483	rs2713736	A	G	5367.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr3	158522960	rs1381463	C	T	191.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr3	158526942	.	G	GT	146.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.570;ClippingRankSum=0.000;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.29;ReadPosRankSum=0.811;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:42,22:0.34:64
chr3	158531974	rs41272621	A	T	858.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:42,41:0.49:83
chr3	158537415	rs146160361	CTTTTT	C	6194.73	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr3	158537443	rs3765083	A	G	9742.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:1,260:1.00:261
chr3	158538056	rs4680469	T	C	1004.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:46,48:0.51:94
chr3	158539294	rs1548092	G	A	211.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:14,11:0.44:25
chr3	158539496	rs41272623	A	G	636.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:27,32:0.54:59
chr3	158541077	rs41272627	C	T	842.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:43,37:0.46:80
chr3	158546552	rs75704067	ATATT	A	319.73	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:7,9:0.56:16
chr3	158546849	rs78482130	G	GT	655.73	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:35,30:0.46:65
chr3	158787632	.	TTG	T	137.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.625;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=1.368;QD=5.74;ReadPosRankSum=1.315;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:14,10:0.42:24
chr3	158970714	rs1020470	T	C	868.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr3	158982846	rs11425712	T	TA	295.73	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:24,17:0.41:41
chr3	158991724	rs2621285	A	T	2144.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr3	159557953	rs13064339	T	C	3322.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr3	159733600	rs589545	G	A	371.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:9,16:0.64:25
chr3	159733692	rs491966	T	C	1114.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:60,51:0.46:111
chr3	159736893	rs2647930	T	C	4766.77	.	AC=1;AF=0.500;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	0/1:186,216:0.54:402
chr3	159737076	rs2647931	G	A	3159.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:132,145:0.52:277
chr3	159744277	rs2936300	C	T	1394.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr3	159744352	rs2279742	C	T	3846.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr3	159744438	rs2914119	C	T	13301.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.79;SOR=0.799;set=HC	GT:AD:AF:DP	1/1:0,297:1.00:297
chr3	159744438	.	CTC	TTT	2947	.	AC=2;AF=1.00;AN=2;BRF=0.44;FR=1.0000;HP=1;HapScore=1;MGOF=9;MMLQ=25;MQ=60.0;NF=105;NR=88;PP=2947;QD=20;SC=AGGACAGGCACTCGCATGGGT;SbPval=0.55;Source=Platypus;TC=198;TCF=107;TCR=91;TR=193;WE=159744448;WS=159744428;set=Platypus	GT:AD:AF:DP	1/1:5,193:0.97:198
chr3	159744440	rs2936301	C	T	13301.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.94;SOR=0.806;set=HC	GT:AD:AF:DP	1/1:0,296:1.00:296
chr3	160003677	rs2275151	T	C	553.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:18,29:0.62:47
chr3	160021681	rs4680576	G	A	1632.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:90,82:0.48:172
chr3	160130110	rs2305407	G	A	691.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:38,34:0.47:72
chr3	160131236	rs374785778	CT	C	101.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.876;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.12;ReadPosRankSum=1.423;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:33,15:0.31:48
chr3	160135428	rs1451760	C	T	427.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:24,19:0.44:43
chr3	160137363	rs142795307	C	CT	342.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.077;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=1.238;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=1.561;QD=6.59;ReadPosRankSum=0.353;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:26,26:0.50:52
chr3	160141665	rs80324252	T	C	2147.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.855;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=1.519;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.71;ReadPosRankSum=-0.987;SOR=0.874;set=HC	GT:AD:AF:DP	0/1:61,85:0.58:146
chr3	160142618	rs11718121	A	C	737.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:35,35:0.50:70
chr3	160142810	.	A	ATGTGTGTGTGTGTG	511.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.123;ClippingRankSum=0.000;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.804;QD=11.12;ReadPosRankSum=1.157;SOR=0.489;set=HC	GT:AD:AF:DP	0/1:29,17:0.37:46
chr3	160148756	rs7631792	C	T	883.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:60,43:0.42:103
chr3	160223032	rs721022	C	T	189.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:11,9:0.45:20
chr3	160233406	rs112603907	CT	C	215.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.366;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=2.852;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.596;QD=1.51;ReadPosRankSum=-0.462;SOR=0.432;set=HC	GT:AD:AF:DP	0/1:105,38:0.27:143
chr3	160245948	rs1551190	A	G	78.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:6,4:0.40:10
chr3	160283126	rs4621370	A	C	4009.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:118,170:0.59:288
chr3	160395093	rs1879797	A	G	1249.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.564;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.33;ReadPosRankSum=1.159;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:74,60:0.45:134
chr3	160474540	.	CGTGT	C,CGTGTGTGTGTGT,CGTGTGTGTGT	1556.73	.	AC=1,1,0;AF=0.500,0.500,0.00;AN=2;DP=133;set=Intersection	GT:AF:DP	1/2:0.66,0.34:47
chr3	160679744	rs7629001	A	T	1015.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:53,43:0.45:96
chr3	160739920	.	AT	A	136.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.710;ClippingRankSum=0.000;DP=108;ExcessHet=3.0103;FS=0.970;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.42;ReadPosRankSum=0.133;SOR=0.908;set=HC	GT:AD:AF:DP	0/1:69,27:0.28:96
chr3	160740016	rs12498008	A	C	1322.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:77,69:0.47:146
chr3	160783445	rs6763838	T	C	1015.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:50,49:0.49:99
chr3	160786675	rs141703332	G	A	2818.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:172,137:0.44:309
chr3	160821929	rs7651087	T	C	1914.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:60,78:0.57:138
chr3	160821969	rs7617204	A	G	2839.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:117,139:0.54:256
chr3	160939732	rs148371722	A	AATCCCAAC	109.73	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:7,4:0.36:11
chr3	160945225	.	A	AT	103.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.589;ClippingRankSum=0.000;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=0.919;QD=4.15;ReadPosRankSum=-1.583;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:13,12:0.48:25
chr3	160951279	rs116816970	A	G	722.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:65,41:0.39:106
chr3	160955879	rs4350933	G	T	719.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.779;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=6.231;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.14;ReadPosRankSum=-0.081;SOR=0.281;set=HC	GT:AD:AF:DP	0/1:38,33:0.46:71
chr3	160955882	rs11344126	CT	C	1049.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.450;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=2.263;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.19;ReadPosRankSum=-0.068;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:28,46:0.62:74
chr3	160967354	rs4290817	G	A	1916.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:113,95:0.46:208
chr3	160970437	rs6789388	G	A	377.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:25,20:0.44:45
chr3	161064193	rs339101	A	T	1290.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:34,53:0.61:87
chr3	163889075	rs12494921	C	T	341.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:15,14:0.48:29
chr3	163889384	rs10936412	T	C	1165.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:95,61:0.39:156
chr3	164059123	rs76722974	G	A	2971.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:114,145:0.56:259
chr3	164714532	rs4855271	C	T	433.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:44,21:0.32:65
chr3	164733721	rs2290738	G	A	3843.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:116,165:0.59:281
chr3	164758630	rs13099130	G	A	566.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:16,21:0.57:37
chr3	164760771	rs12381230	T	C	435.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:26,20:0.43:46
chr3	164764719	rs9838509	C	A	6717.77	.	AC=1;AF=0.500;AN=2;DB;DP=762;set=Intersection	GT:AD:AF:DP	0/1:412,342:0.45:754
chr3	164766807	rs200218470	T	TAA	732.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.260;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=1.810;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.85;ReadPosRankSum=-0.484;SOR=0.272;set=HC	GT:AD:AF:DP	0/1:36,21:0.37:57
chr3	164766808	rs67477789	TC	T	732.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-5.942;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=1.822;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.63;ReadPosRankSum=0.025;SOR=0.258;set=HC	GT:AD:AF:DP	0/1:37,21:0.36:58
chr3	164766816	rs9821196	C	A	859.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.501;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=1.536;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.03;ReadPosRankSum=-0.761;SOR=0.327;set=HC	GT:AD:AF:DP	0/1:40,26:0.39:66
chr3	164766835	rs9841237	T	C	962.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:49,43:0.47:92
chr3	164772957	rs9290256	C	T	1398.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:79,66:0.46:145
chr3	164773057	rs9290257	G	A	2855.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:166,143:0.46:309
chr3	164776913	rs60170840	C	CAT	8073.73	.	AC=1;AF=0.500;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	0/1:186,206:0.53:392
chr3	164777677	rs9290259	T	G	1979.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:94,93:0.50:187
chr3	164781368	rs11718901	G	A	506.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:28,24:0.46:52
chr3	164783165	rs9283633	T	C	1023.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:43,50:0.54:93
chr3	164783260	rs9681508	T	G	96.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.38;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr3	164785338	rs9865476	G	A	191.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:12,10:0.45:22
chr3	164786382	rs9758479	C	A	1118.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:29,29:0.50:58
chr3	164786396	rs9754967	T	C	1231.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:41,32:0.44:73
chr3	164786413	rs9756068	A	G	1564.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:67,53:0.44:120
chr3	164786629	rs11313475	TA	T	1752.73	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:64,100:0.61:164
chr3	164793541	rs7432386	G	T	221.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:12,9:0.43:21
chr3	164905570	rs11922760	A	G	443.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:22,17:0.44:39
chr3	164905688	rs17449404	G	A	3064.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:183,147:0.45:330
chr3	165491280	rs1803274	C	T	1530.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:80,74:0.48:154
chr3	165495400	rs2686409	G	A	3215.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:96,83:0.46:179
chr3	165495420	rs2686410	G	C	3928.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:137,122:0.47:259
chr3	165496622	rs2686411	A	T	792.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr3	166966436	rs60512741	C	T	2588.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:152,129:0.46:281
chr3	167000256	rs12638625	G	C	3157.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:144,150:0.51:294
chr3	167006568	rs7625639	G	T	3092.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:129,129:0.50:258
chr3	167006612	rs7625651	G	T	5729.77	.	AC=1;AF=0.500;AN=2;DB;DP=536;set=Intersection	GT:AD:AF:DP	0/1:260,270:0.51:530
chr3	167023738	rs13096767	G	C	466.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:39,27:0.41:66
chr3	167033411	rs148371757	T	C	360.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:28,17:0.38:45
chr3	167034814	rs13068132	T	C	5325.77	.	AC=1;AF=0.500;AN=2;DB;DP=479;set=Intersection	GT:AD:AF:DP	0/1:221,253:0.53:474
chr3	167035332	rs34465133	T	C	3047.77	.	AC=1;AF=0.500;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	0/1:185,162:0.47:347
chr3	167035501	rs4580553	G	A	912.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr3	167040185	rs12632964	A	C	295.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:7,12:0.63:19
chr3	167051726	rs10936530	A	G	579.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:21,27:0.56:48
chr3	167051769	rs11923054	T	C	268.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:8,12:0.60:20
chr3	167068256	rs4619784	T	A	1748.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:69,85:0.55:154
chr3	167077691	rs4257551	T	A	3620.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.24;SOR=0.722;set=HC	GT:AD:AF:DP	1/1:0,138:1.00:138
chr3	167078544	rs9834845	T	C	620.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:40,30:0.43:70
chr3	167164352	rs2272140	C	T	444.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:24,21:0.47:45
chr3	167167100	rs6803996	C	T	6690.77	.	AC=1;AF=0.500;AN=2;DB;DP=719;MQ=60.02;set=Intersection	GT:AD:AF:DP	0/1:378,328:0.46:706
chr3	167167186	rs6770577	T	A	5228.77	.	AC=1;AF=0.500;AN=2;DB;DP=575;set=Intersection	GT:AD:AF:DP	0/1:311,256:0.45:567
chr3	167184878	rs9841174	T	C	3744.77	.	AC=1;AF=0.500;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	0/1:181,181:0.50:362
chr3	167189607	rs17246389	A	C	2442.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:125,121:0.49:246
chr3	167191652	rs4129073	C	T	954.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:28,46:0.62:74
chr3	167217964	rs13060964	A	G	920.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:58,47:0.45:105
chr3	167218188	rs13061345	A	T	1193.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:40,55:0.58:95
chr3	167218241	rs13061499	C	T	554.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:14,24:0.63:38
chr3	167245765	rs139588696	G	A	1927.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:83,92:0.53:175
chr3	167254522	.	C	T	73.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.454;ClippingRankSum=0.000;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.84;ReadPosRankSum=-0.417;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:20,6:0.23:26
chr3	167254558	rs138019711	TAA	T	967.73	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:27,29:0.52:56
chr3	167351418	rs9845725	T	C	1427.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:62,62:0.50:124
chr3	167413662	rs111688021	G	A	436.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:27,19:0.41:46
chr3	167508062	rs13090836	T	C	319.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:9,12:0.57:21
chr3	167747949	rs6798995	C	T	455.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:15,18:0.55:33
chr3	167754573	rs6786410	A	G	1474.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr3	167754852	.	A	ATCTATGAATGCCCATTCATAGATGGGCATTTGT	2505.73	.	AC=2;AF=1.00;AN=2;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr3	167758964	rs62273305	T	C	326.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr3	167762678	rs57702503	C	CA	1324.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.798;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.23;ReadPosRankSum=1.432;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:30,88:0.75:118
chr3	167764820	rs77249029	A	G	1239.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr3	168269756	rs6771018	A	G	3917.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr3	168269864	rs11321565	TA	T	367.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.657;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=15.99;ReadPosRankSum=1.156;SOR=1.528;set=HC	GT:AD:AF:DP	1/1:1,22:0.96:23
chr3	168538993	rs603638	A	G	4564.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr3	168542454	rs145528794	T	TCA,TCACACA	1419.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=97;set=Intersection	GT:AF:DP	1/2:0.47,0.29:77
chr3	168546808	rs192924582	T	C	1413.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:71,59:0.45:130
chr3	168546914	rs678690	C	T	5582.77	.	AC=1;AF=0.500;AN=2;DB;DP=516;set=Intersection	GT:AD:AF:DP	0/1:251,260:0.51:511
chr3	168806987	rs1981745	G	A	854.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:40,35:0.47:75
chr3	168810874	rs17466625	C	T	4520.77	.	AC=1;AF=0.500;AN=2;DB;DP=542;set=Intersection	GT:AD:AF:DP	0/1:305,228:0.43:533
chr3	168810980	rs12634348	C	T	1097.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:61,48:0.44:109
chr3	168818560	rs9857376	C	T	1093.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr3	168819788	rs9290358	A	G	626.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr3	168825911	rs4955639	T	C	86.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:4,5:0.56:9
chr3	168840571	rs3851380	A	T	4231.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr3	168840607	rs3851381	C	T	2484.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr3	168862931	rs72000698	AACACAC	A	397.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.295;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=2.013;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=-1.145;QD=10.75;ReadPosRankSum=-1.466;SOR=1.588;set=HC	GT:AD:AF:DP	0/1:22,15:0.41:37
chr3	168862967	rs151149708	CACACACACACAGAG	C	275.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.047;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.47;MQRankSum=1.343;QD=6.89;ReadPosRankSum=-0.846;SOR=0.435;set=HC	GT:AD:AF:DP	0/1:25,15:0.38:40
chr3	169283921	rs3863106	C	T	851.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:28,39:0.58:67
chr3	169486144	rs9822885	A	G	1768.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:113,82:0.42:195
chr3	169492016	rs34847803	T	TA	2220.73	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:103,76:0.42:179
chr3	169492101	rs10936599	C	T	5512.77	.	AC=1;AF=0.500;AN=2;DB;DP=597;set=Intersection	GT:AD:AF:DP	0/1:311,278:0.47:589
chr3	169500487	rs3772190	G	A	877.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:37,36:0.49:73
chr3	169514585	rs10936600	A	T	3587.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:158,174:0.52:332
chr3	169518455	rs6793295	T	C	1126.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:62,58:0.48:120
chr3	169526272	rs28626343	T	C	1017.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:25,42:0.63:67
chr3	169540397	rs1920119	T	C	8473.77	.	AC=1;AF=0.500;AN=2;DB;DP=819;set=Intersection	GT:AD:AF:DP	0/1:425,381:0.47:806
chr3	169550759	rs12486767	G	A	2200.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:96,96:0.50:192
chr3	169555162	rs66506858	TTC	T	3314.73	.	AC=1;AF=0.500;AN=2;DB;DP=175;MQ=60.12;set=Intersection	GT:AD:AF:DP	0/1:81,90:0.53:171
chr3	169558025	rs3732451	C	T	3922.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:130,174:0.57:304
chr3	169566090	rs9290375	A	G	3532.77	.	AC=1;AF=0.500;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	0/1:158,169:0.52:327
chr3	169574465	rs11919269	T	G	2920.77	.	AC=1;AF=0.500;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	0/1:171,181:0.51:352
chr3	169700520	rs180699945	C	T	843.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:71,47:0.40:118
chr3	169801658	rs6444895	G	A	199.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:14,9:0.39:23
chr3	169894680	rs1386333	G	A	1549.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:81,77:0.49:158
chr3	169980956	.	CA	C	276.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.020;ClippingRankSum=0.000;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.58;ReadPosRankSum=0.940;SOR=0.610;set=HC	GT:AD:AF:DP	1/1:3,19:0.86:22
chr3	170078232	rs3772173	C	T	17192.77	.	AC=2;AF=1.00;AN=2;DB;DP=648;set=Intersection	GT:AD:AF:DP	1/1:2,638:1.00:640
chr3	170099218	rs146524896	ATTAT	A	2974.73	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr3	170105233	rs6786374	C	T	3005.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr3	170105378	rs6786542	C	T	4165.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr3	170109112	.	C	CT	43.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.224;ClippingRankSum=0.000;DP=59;ExcessHet=3.0103;FS=1.573;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.15;ReadPosRankSum=-0.610;SOR=1.161;set=HC	GT:AD:AF:DP	0/1:29,9:0.24:38
chr3	170197954	rs989997	T	G	890.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:49,37:0.43:86
chr3	170198898	rs3732449	C	T	3240.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:148,153:0.51:301
chr3	170198967	rs1861939	G	A	1365.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:38,56:0.60:94
chr3	170584064	rs35192046	A	C	220.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.628;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=2.762;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.26;ReadPosRankSum=2.522;SOR=1.536;set=HC	GT:AD:AF:DP	0/1:12,6:0.33:18
chr3	170584074	rs35683888	A	G	279.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.209;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=2.993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.16;ReadPosRankSum=1.085;SOR=1.845;set=HC	GT:AD:AF:DP	0/1:14,9:0.39:23
chr3	170586057	rs3732927	C	T	632.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:15,28:0.65:43
chr3	170611304	rs3215293	GT	G	1040.73	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:26,31:0.54:57
chr3	170715830	rs5398	G	A	7058.77	.	AC=1;AF=0.500;AN=2;DB;DP=703;set=Intersection	GT:AD:AF:DP	0/1:356,330:0.48:686
chr3	170723276	rs5406	G	A	468.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:37,20:0.35:57
chr3	170723664	rs2292622	A	G	2342.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.993;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=0.894;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.52;ReadPosRankSum=-0.480;SOR=0.921;set=HC	GT:AD:AF:DP	0/1:60,60:0.50:120
chr3	170723668	rs2292621	C	T	2412.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.163;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.42;ReadPosRankSum=-0.913;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:66,65:0.50:131
chr3	170724883	rs8192675	T	C	1119.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:83,56:0.40:139
chr3	170724955	rs5404	C	T	1768.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:112,89:0.44:201
chr3	170727658	rs10513689	G	A	602.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:22,17:0.44:39
chr3	170727701	.	G	GGT	63.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.000;ClippingRankSum=0.000;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.90;ReadPosRankSum=0.254;SOR=0.478;set=HC	GT:AD:AF:DP	0/1:60,11:0.15:71
chr3	170727702	rs58674412	GT	G	1638.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.059;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=8.139;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.06;ReadPosRankSum=0.189;SOR=1.708;set=HC	GT:AD:AF:DP	0/1:43,43:0.50:86
chr3	170727704	.	GTGT	G	1289.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.699;ClippingRankSum=0.000;DP=89;ExcessHet=3.0103;FS=9.389;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.66;ReadPosRankSum=-0.157;SOR=1.859;set=HC	GT:AD:AF:DP	0/1:43,45:0.51:88
chr3	170727739	rs5402	T	A	2290.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.917;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=5.650;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.62;ReadPosRankSum=0.157;SOR=1.124;set=HC	GT:AD:AF:DP	0/1:51,72:0.59:123
chr3	170732300	rs5400	G	A	4975.77	.	AC=1;AF=0.500;AN=2;DB;DP=562;set=Intersection	GT:AD:AF:DP	0/1:309,248:0.45:557
chr3	170732599	rs7356034	G	A	572.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:26,24:0.48:50
chr3	170784256	rs145832204	AT	A	430.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.862;ClippingRankSum=0.000;DB;DP=205;ExcessHet=3.0103;FS=7.643;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=2.493;QD=2.58;ReadPosRankSum=-1.056;SOR=0.291;set=HC	GT:AD:AF:DP	0/1:105,62:0.37:167
chr3	170801912	rs371989911	TA	T	362.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.343;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=4.912;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=0.000;QD=2.31;ReadPosRankSum=1.400;SOR=1.172;set=HC	GT:AD:AF:DP	0/1:101,56:0.36:157
chr3	170825905	rs6444960	C	G	5737.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr3	170825920	rs2291900	G	A	1744.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:116,87:0.43:203
chr3	170857167	.	GCA	G	156.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.335;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=1.416;QD=4.02;ReadPosRankSum=-1.870;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:28,11:0.28:39
chr3	170858406	rs2292006	T	G	2342.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:87,104:0.54:191
chr3	170885097	rs2292005	C	T	2087.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr3	170893070	rs12637875	G	A	8906.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:0,333:1.00:333
chr3	170928797	rs6444972	T	C	839.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:1,31:0.97:32
chr3	171065010	rs3082367	G	GA	2213.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.863;ClippingRankSum=0.000;DB;DP=339;ExcessHet=3.0103;FS=0.712;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.62;ReadPosRankSum=0.299;SOR=0.830;set=HC	GT:AD:AF:DP	0/1:71,159:0.69:230
chr3	171065031	rs1389047	G	C	8459.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr3	171323305	rs2287578	T	C	1725.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:76,76:0.50:152
chr3	171329411	.	G	T	6171.77	.	AC=1;AF=0.500;AN=2;DP=606;set=Intersection	GT:AD:AF:DP	0/1:300,300:0.50:600
chr3	171338237	rs9881788	T	G	3211.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr3	171395468	rs2124147	A	G	8136.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr3	171404478	rs2290480	C	A	4832.77	.	AC=1;AF=0.500;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	0/1:202,230:0.53:432
chr3	171405384	rs2305547	A	T	874.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr3	171442635	rs7647840	C	T	7305.77	.	AC=1;AF=0.500;AN=2;DB;DP=776;set=Intersection	GT:AD:AF:DP	0/1:414,356:0.46:770
chr3	171442750	rs10710862	AG	A	3085.73	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:111,94:0.46:205
chr3	171442774	rs9882641	G	A	1622.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:63,66:0.51:129
chr3	171443607	rs4131284	C	G	306.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:12,12:0.50:24
chr3	171443955	rs4131283	T	A	564.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:23,23:0.50:46
chr3	171452645	rs9869368	A	G	2383.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:151,114:0.43:265
chr3	171455188	rs6794454	T	C	917.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:29,38:0.57:67
chr3	171510238	rs3934620	C	T	2027.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:115,97:0.46:212
chr3	171844787	rs4894810	A	T	19142.77	.	AC=2;AF=1.00;AN=2;DB;DP=715;set=Intersection	GT:AD:AF:DP	1/1:0,710:1.00:710
chr3	171969077	rs7652177	C	G	3175.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:163,145:0.47:308
chr3	172003831	rs67373503	CT	C	451.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.257;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=5.063;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.924;QD=5.65;ReadPosRankSum=0.136;SOR=1.375;set=HC	GT:AD:AF:DP	0/1:39,41:0.51:80
chr3	172034350	rs4894416	T	C	669.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:15,28:0.65:43
chr3	172034901	rs34251104	T	G	3997.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.088;ClippingRankSum=0.000;DB;DP=365;ExcessHet=3.0103;FS=6.109;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.07;ReadPosRankSum=-0.347;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:163,198:0.55:361
chr3	172034979	.	C	CT	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.029;ClippingRankSum=0.000;DP=269;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.20;ReadPosRankSum=-1.181;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:164,29:0.15:193
chr3	172046695	rs201161345	G	GT	90.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.733;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=6.839;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.883;QD=0.78;ReadPosRankSum=1.555;SOR=0.244;set=HC	GT:AD:AF:DP	0/1:94,22:0.19:116
chr3	172046861	rs2270568	T	C	4170.77	.	AC=1;AF=0.500;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	0/1:211,201:0.49:412
chr3	172046933	rs6799133	A	G	2584.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:102,116:0.53:218
chr3	172052897	rs71300460	G	GT	307.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.796;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=3.508;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.31;ReadPosRankSum=-0.297;SOR=1.154;set=HC	GT:AD:AF:DP	0/1:92,41:0.31:133
chr3	172059121	rs570549	G	A	1699.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr3	172060700	rs606797	C	T	667.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:54,33:0.38:87
chr3	172064091	rs583550	G	A	2440.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:131,120:0.48:251
chr3	172064335	.	A	AT	89.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.258;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=10.193;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=1.121;QD=3.59;ReadPosRankSum=-1.200;SOR=0.031;set=HC	GT:AD:AF:DP	0/1:13,12:0.48:25
chr3	172099011	rs9853174	A	G	882.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:23,33:0.59:56
chr3	172162829	rs482204	G	A	769.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.089;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=1.435;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.77;ReadPosRankSum=-0.104;SOR=0.373;set=HC	GT:AD:AF:DP	0/1:20,21:0.51:41
chr3	172162837	rs477251	T	C	868.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.429;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=1.145;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.71;ReadPosRankSum=-0.553;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:25,27:0.52:52
chr3	172166033	rs495225	G	A	5799.77	.	AC=1;AF=0.500;AN=2;DB;DP=544;set=Intersection	GT:AD:AF:DP	0/1:260,278:0.52:538
chr3	172224303	rs1131532	A	G	3748.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr3	172224769	rs111284464	GC	G	6846.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr3	172224771	rs17848019	T	A	6854.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr3	172227199	rs3815496	C	T	2914.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr3	172365619	rs9865941	G	A	2533.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:100,114:0.53:214
chr3	172428508	rs7629698	C	T	2492.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr3	172428782	rs2276805	T	C	5329.77	.	AC=1;AF=0.500;AN=2;DB;DP=455;set=Intersection	GT:AD:AF:DP	0/1:188,255:0.58:443
chr3	172473038	.	G	A	428.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.200;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.25;ReadPosRankSum=0.975;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:15,20:0.57:35
chr3	172473484	rs1403088	A	G	199.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chr3	172480173	rs10654513	A	ATT	292.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr3	172480174	rs11313111	AC	A	292.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:2,8:0.80:10
chr3	172501443	rs7649589	A	C	128.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:10,7:0.41:17
chr3	172520818	rs7644191	G	C	701.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:27,30:0.53:57
chr3	172534428	rs10936738	C	T	1125.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:41,45:0.52:86
chr3	172537850	rs35236458	T	G	1448.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:53,61:0.54:114
chr3	172631617	rs115605249	A	T	968.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:19,41:0.68:60
chr3	172634025	rs141570329	T	TTG	926.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.130;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=1.074;QD=10.78;ReadPosRankSum=-1.269;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:23,63:0.73:86
chr3	172835082	rs16846616	C	T	5080.77	.	AC=1;AF=0.500;AN=2;DB;DP=508;set=Intersection	GT:AD:AF:DP	0/1:269,231:0.46:500
chr3	172835125	rs1515442	T	C	4205.77	.	AC=1;AF=0.500;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	0/1:223,189:0.46:412
chr3	172835290	rs1515441	C	T	4688.77	.	AC=1;AF=0.500;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	0/1:193,212:0.52:405
chr3	173322277	rs11718812	G	A	2138.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:80,97:0.55:177
chr3	173323278	rs3853390	A	G	5235.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr3	173413519	rs7638716	A	G	171.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.260;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=5.402;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.91;ReadPosRankSum=-1.044;SOR=0.442;set=HC	GT:AD:AF:DP	0/1:22,13:0.37:35
chr3	173507395	rs4499633	T	C	655.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr3	174581888	rs6445184	T	C	10583.77	.	AC=2;AF=1.00;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	1/1:0,405:1.00:405
chr3	174814738	rs9823911	G	A	2535.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:133,120:0.47:253
chr3	174814920	rs9836841	A	G	4703.77	.	AC=1;AF=0.500;AN=2;DB;DP=585;set=Intersection	GT:AD:AF:DP	0/1:347,233:0.40:580
chr3	174951756	rs4371530	T	C	2494.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:147,123:0.46:270
chr3	175087275	rs9869507	A	G	116.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,7:0.54:13
chr3	175087408	rs78831152	C	T	851.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:31,44:0.59:75
chr3	175165079	rs6802937	C	T	15278.77	.	AC=2;AF=1.00;AN=2;DB;DP=581;set=Intersection	GT:AD:AF:DP	1/1:0,577:1.00:577
chr3	175165201	rs2161041	T	G	5045.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:2,181:0.99:183
chr3	175189406	rs35213579	CT	C	4063.73	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:4,200:0.98:204
chr3	175189417	rs79264590	G	A	10036.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr3	175189447	rs9290555	G	A	10932.77	.	AC=2;AF=1.00;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	1/1:0,399:1.00:399
chr3	175205148	rs7646041	C	T	2182.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr3	175205248	rs77907800	A	T	3524.77	.	AC=1;AF=0.500;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	0/1:164,165:0.50:329
chr3	175345143	rs9866564	C	G	1470.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr3	175473047	rs9826737	T	C	2405.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr3	176750734	rs16827730	G	C	1185.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:55,53:0.49:108
chr3	176752202	rs1905503	A	T	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.108;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.82;ReadPosRankSum=0.566;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr3	176756230	rs77478951	G	A	2000.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:145,103:0.42:248
chr3	176765253	rs1201300	G	A	2789.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr3	176765269	rs3749234	T	C	987.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:31,45:0.59:76
chr3	176767673	.	A	AGG	1159.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.993;ClippingRankSum=0.000;DP=52;ExcessHet=3.0103;FS=6.816;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.30;ReadPosRankSum=-1.736;SOR=2.728;set=HC	GT:AD:AF:DP	0/1:24,28:0.54:52
chr3	176769608	rs1881979	G	A	913.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:50,44:0.47:94
chr3	176771833	rs138539758	CGTGT	C,CGT	2107.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.174;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=40.53;ReadPosRankSum=-0.766;SOR=0.569;set=HC	GT:AD:AF:DP	1/2:1,35,16:0.67,0.31:52
chr3	176771861	rs55995541	T	C	556.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:31,24:0.44:55
chr3	178542331	rs368029162	ATTT	A	313.75	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.914;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=1.913;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=0.090;QD=11.62;ReadPosRankSum=0.101;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:16,11:0.41:27
chr3	178542417	rs9857119	A	C	367.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.271;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=1.304;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.66;ReadPosRankSum=-0.191;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:36,12:0.25:48
chr3	178542421	rs113497839	G	C	361.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.885;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=1.289;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.24;ReadPosRankSum=0.023;SOR=0.436;set=HC	GT:AD:AF:DP	0/1:38,12:0.24:50
chr3	178542454	rs11924270	A	G	192.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:31,14:0.31:45
chr3	178546026	rs9831934	T	C	2912.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:162,143:0.47:305
chr3	178560581	rs6443583	A	C	3308.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:135,152:0.53:287
chr3	178785549	rs6772028	G	A	3528.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:2,122:0.98:124
chr3	178921639	rs2699895	C	A	464.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:9,17:0.65:26
chr3	178922274	rs2699896	C	A	2910.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr3	178922430	rs3729679	A	G	838.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:49,39:0.44:88
chr3	178927645	rs3729681	C	T	556.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:28,22:0.44:50
chr3	178939018	rs3729689	T	C	985.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:41,39:0.49:80
chr3	178942431	rs2699889	C	G	3126.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:2,108:0.98:110
chr3	178968634	rs7645550	C	T	6097.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr3	178984575	rs7612684	A	G	3754.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr3	179051472	rs35983049	A	G	7315.77	.	AC=1;AF=0.500;AN=2;DB;DP=722;set=Intersection	GT:AD:AF:DP	0/1:383,327:0.46:710
chr3	179083024	.	A	AT	73.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.722;ClippingRankSum=0.000;DP=48;ExcessHet=3.0103;FS=1.272;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.64;ReadPosRankSum=1.221;SOR=0.950;set=HC	GT:AD:AF:DP	0/1:33,12:0.27:45
chr3	179092989	rs9865666	C	T	641.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:27,28:0.51:55
chr3	179096006	rs35435588	C	CA	246.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.972;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.25;ReadPosRankSum=-2.109;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:23,24:0.51:47
chr3	179096508	rs7637065	C	G	5360.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr3	179103342	rs200984893	C	CT	118.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.187;ClippingRankSum=-0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.60;ReadPosRankSum=1.664;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:9,9:0.50:18
chr3	179109735	rs2287209	A	G	800.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:51,40:0.44:91
chr3	179137273	rs1362650	A	G	5492.77	.	AC=1;AF=0.500;AN=2;DB;DP=636;set=Intersection	GT:AD:AF:DP	0/1:350,281:0.45:631
chr3	179288086	rs12632721	C	T	727.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:43,33:0.43:76
chr3	179291308	rs71907893	CT	C,TT	3765.73	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;BaseQRankSum=-1.252;ClippingRankSum=0.000;DB;DP=234;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.37;MQRankSum=0.239;QD=20.36;ReadPosRankSum=-1.302;SOR=1.159;set=HC	GT:AD:AF:DP	1/2:1,143,41:0.77,0.22:185
chr3	179291309	rs6443658	T	C	113.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.154;ClippingRankSum=0.000;DB;DP=231;ExcessHet=3.0103;FS=2.529;MLEAC=1;MLEAF=0.500;MQ=60.37;MQRankSum=-1.315;QD=0.51;ReadPosRankSum=-1.397;SOR=0.439;set=HC	GT:AD:AF:DP	0/1:185,39:0.17:224
chr3	179294352	rs2292907	C	A	3884.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:122,177:0.59:299
chr3	179298584	rs138102554	CT	C	330.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.498;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=2.114;MLEAC=1;MLEAF=0.500;MQ=60.53;MQRankSum=2.251;QD=4.59;ReadPosRankSum=0.099;SOR=1.077;set=HC	GT:AD:AF:DP	0/1:41,31:0.43:72
chr3	179298999	rs1132429	C	T	12891.77	.	AC=2;AF=1.00;AN=2;DB;DP=503;set=Intersection	GT:AD:AF:DP	1/1:2,486:1.00:488
chr3	179304255	rs9818068	G	A	966.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.270;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=16.96;ReadPosRankSum=0.612;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:6,51:0.89:57
chr3	179304266	rs12635617	A	G	1075.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.643;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=3.338;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.15;ReadPosRankSum=-0.257;SOR=1.169;set=HC	GT:AD:AF:DP	0/1:29,47:0.62:76
chr3	179304514	rs61086485	G	A	947.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:29,39:0.57:68
chr3	179305626	rs79000506	G	A	579.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:17,23:0.57:40
chr3	179305653	rs73883565	A	T	469.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.405;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.00;ReadPosRankSum=-1.545;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:21,26:0.55:47
chr3	179305654	rs6443659	A	T	1635.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.80;SOR=2.147;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr3	179306775	rs10513762	C	T	1199.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:42,57:0.58:99
chr3	179320310	rs3732998	A	C	122.88	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=20.48;ReadPosRankSum=0.674;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:1,5:0.83:6
chr3	179320383	.	GGGC	G	53.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.887;ClippingRankSum=-0.000;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.72;ReadPosRankSum=1.029;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:5,3:0.38:8
chr3	179320386	rs371595016	CG	C	61.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.72;ReadPosRankSum=-1.029;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:3,5:0.62:8
chr3	179322385	rs2339844	A	C	1231.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:76,56:0.42:132
chr3	179325566	rs113527645	G	GCTGT	5109.73	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:131,131:0.50:262
chr3	179325722	rs58728627	A	G	593.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:25,25:0.50:50
chr3	179371154	rs2276803	C	T	9002.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:0,341:1.00:341
chr3	179399570	rs13080037	C	T	2033.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:90,98:0.52:188
chr3	179448066	rs11309768	AT	A	645.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.399;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=0.813;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.980;QD=5.92;ReadPosRankSum=0.629;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:60,49:0.45:109
chr3	179448383	rs3213761	C	T	1718.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:115,86:0.43:201
chr3	179463076	rs58527921	A	G	1827.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.486;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.908;MLEAC=1;MLEAF=0.500;MQ=59.72;MQRankSum=-1.348;QD=23.74;ReadPosRankSum=-0.741;SOR=0.871;set=HC	GT:AD:AF:DP	0/1:29,48:0.62:77
chr3	179463081	rs59131484	G	A	1790.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.610;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.997;MLEAC=1;MLEAF=0.500;MQ=59.71;MQRankSum=-1.030;QD=26.33;ReadPosRankSum=-0.653;SOR=0.942;set=HC	GT:AD:AF:DP	0/1:24,44:0.65:68
chr3	179469995	rs2239639	A	G	1011.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:64,49:0.43:113
chr3	179472674	rs2287240	C	T	3615.77	.	AC=1;AF=0.500;AN=2;DB;DP=469;set=Intersection	GT:AD:AF:DP	0/1:278,189:0.40:467
chr3	179474767	rs3732992	A	G	1585.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:50,75:0.60:125
chr3	179481971	rs71917525	CTG	C	1269.73	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:49,59:0.55:108
chr3	179527459	rs35082123	G	GAA	302.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.268;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.44;ReadPosRankSum=0.624;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:12,17:0.59:29
chr3	179592053	rs1609981	G	A	1112.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:39,48:0.55:87
chr3	179605647	rs41265425	C	A	2295.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:98,101:0.51:199
chr3	179689173	rs3774255	T	C	1407.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr3	180322248	.	C	CT	44.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.861;ClippingRankSum=0.000;DP=68;ExcessHet=3.0103;FS=2.627;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.70;ReadPosRankSum=-0.215;SOR=1.121;set=HC	GT:AD:AF:DP	0/1:51,13:0.20:64
chr3	180328027	rs34873940	C	G	4293.77	.	AC=1;AF=0.500;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	0/1:190,211:0.53:401
chr3	180334719	rs11914833	C	T	754.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:56,37:0.40:93
chr3	180362088	rs73051767	T	C	618.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:13,25:0.66:38
chr3	180365956	rs6769457	G	A	631.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:33,29:0.47:62
chr3	180366067	rs2338436	T	C	1171.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:52,56:0.52:108
chr3	180372433	.	G	GA	170.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.620;ClippingRankSum=0.000;DP=82;ExcessHet=3.0103;FS=2.862;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=1.844;QD=2.34;ReadPosRankSum=-0.214;SOR=0.332;set=HC	GT:AD:AF:DP	0/1:49,24:0.33:73
chr3	180630565	rs1805579	T	C	5482.77	.	AC=1;AF=0.500;AN=2;DB;DP=601;set=Intersection	GT:AD:AF:DP	0/1:313,276:0.47:589
chr3	180633485	rs1805564	G	A	5899.77	.	AC=1;AF=0.500;AN=2;DB;DP=616;set=Intersection	GT:AD:AF:DP	0/1:316,288:0.48:604
chr3	180679156	rs7428473	G	A	242.78	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:1,10:0.91:11
chr3	180680889	rs11379525	A	AT	177.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.050;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.04;ReadPosRankSum=-0.439;SOR=0.963;set=HC	GT:AD:AF:DP	0/1:24,20:0.45:44
chr3	180688997	rs11368900	C	CA	1770.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr3	180693215	rs34318725	G	GT	383.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.602;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=1.316;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.85;ReadPosRankSum=-0.946;SOR=0.392;set=HC	GT:AD:AF:DP	0/1:25,31:0.55:56
chr3	182546017	rs9814205	C	A	2732.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr3	182575631	rs661774	G	T	634.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr3	182576923	rs645597	T	A	1245.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr3	182585367	.	C	CTTT	92.80	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.094;ClippingRankSum=-0.000;DP=27;ExcessHet=3.0103;FS=3.010;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.31;ReadPosRankSum=0.732;SOR=0.160;set=HC	GT:AD:AF:DP	0/1:3,6:0.67:9
chr3	182590354	rs771156	C	T	2307.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr3	182598863	rs796406	A	G	1635.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr3	182681740	rs4859146	C	T	2736.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr3	182681853	rs4859147	T	C	2926.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr3	182735182	rs6786878	C	A	7078.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr3	182755209	rs2270968	T	G	5275.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr3	182757084	rs2270967	G	A	1927.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr3	182790249	rs7622479	G	A	6541.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr3	182804385	rs6806083	G	A	6196.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr3	182810144	rs3732604	T	G	1892.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:117,97:0.45:214
chr3	182817328	rs937652	C	G	22417.77	.	AC=2;AF=1.00;AN=2;DB;DP=841;set=Intersection	GT:AD:AF:DP	1/1:2,832:1.00:834
chr3	182853670	rs482912	T	C	3225.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:108,149:0.58:257
chr3	182858198	.	CAAAAAAAAAAAAA	C	2284.80	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.514;ClippingRankSum=0.000;DP=119;ExcessHet=3.0103;FS=15.726;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.662;QD=26.26;ReadPosRankSum=-0.105;SOR=2.070;set=HC	GT:AD:AF:DP	0/1:15,72:0.83:87
chr3	182858287	rs522235	C	T	3897.77	.	AC=1;AF=0.500;AN=2;DB;DP=531;set=Intersection	GT:AD:AF:DP	0/1:311,206:0.40:517
chr3	182858461	rs831256	A	G	1877.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:66,79:0.54:145
chr3	182870082	rs682396	G	A	1355.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr3	182870367	.	GT	G	824.73	.	AC=1;AF=0.500;AN=2;DP=68;set=Intersection	GT:AD:AF:DP	0/1:37,31:0.46:68
chr3	182870436	rs514636	G	A	494.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr3	182871962	rs653316	C	T	3345.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:194,157:0.45:351
chr3	182880480	rs3811729	A	G	3519.77	.	AC=1;AF=0.500;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	0/1:182,170:0.48:352
chr3	182880495	rs11543123	C	A	4261.77	.	AC=1;AF=0.500;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	0/1:171,208:0.55:379
chr3	182880629	rs602762	A	C	3665.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.73;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,112:1.00:112
chr3	182880629	.	AG	CA,CG	904	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.36;FR=0.5000,0.5000;HP=3;HapScore=2;MGOF=9;MMLQ=27;MQ=60.0;NF=10,28;NR=26,66;PP=529,904;QD=16.1796631906;SC=CCTACGGAGCAGGGAGGGGCG;SbPval=0.63;Source=Platypus;TC=95;TCF=28;TCR=67;TR=36,94;WE=182880638;WS=182880619;set=Platypus	GT:AF:DP	0/1:0.38:95
chr3	182880630	rs3811731	G	A	820.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.411;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.785;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.53;ReadPosRankSum=1.153;SOR=0.587;set=HC	GT:AD:AF:DP	0/1:66,43:0.39:109
chr3	182913092	rs577136	T	G	692.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:50,34:0.40:84
chr3	182925404	rs6804951	T	C	4674.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr3	182946002	rs6803121	A	G	11651.77	.	AC=2;AF=1.00;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	1/1:0,429:1.00:429
chr3	182947413	rs1122143	C	G	587.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:29,24:0.45:53
chr3	182987515	rs3811732	G	A	441.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:9,18:0.67:27
chr3	183368216	rs3755648	A	T	7226.77	.	AC=1;AF=0.500;AN=2;DB;DP=697;set=Intersection	GT:AD:AF:DP	0/1:346,347:0.50:693
chr3	183368891	rs2293031	C	T	5302.77	.	AC=1;AF=0.500;AN=2;DB;DP=514;set=Intersection	GT:AD:AF:DP	0/1:262,244:0.48:506
chr3	183439972	rs3841649	A	AG	1196.73	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:42,38:0.47:80
chr3	183476685	rs262993	G	A	4194.77	.	AC=1;AF=0.500;AN=2;DB;DP=532;set=Intersection	GT:AD:AF:DP	0/1:303,221:0.42:524
chr3	183480108	rs3830564	ATGT	A	1005.73	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:26,27:0.51:53
chr3	183491340	rs262961	T	C	1384.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:41,59:0.59:100
chr3	183491720	rs262960	T	C	815.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:42,32:0.43:74
chr3	183493743	rs146705467	CGGA	C	1081.73	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:39,30:0.43:69
chr3	183493991	rs2606220	G	A	446.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:34,22:0.39:56
chr3	183510782	rs263022	T	A	694.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:25,27:0.52:52
chr3	183521133	rs263042	A	G	955.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:84,52:0.38:136
chr3	183524193	rs263034	T	C	3206.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:132,154:0.54:286
chr3	183524349	rs263033	C	G	726.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:24,28:0.54:52
chr3	183524379	rs263032	A	G	506.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:11,18:0.62:29
chr3	183524948	rs263031	T	C	796.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:25,33:0.57:58
chr3	183528442	rs263024	C	T	2014.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:106,93:0.47:199
chr3	183535094	rs2582091	C	T	398.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:15,18:0.55:33
chr3	183535763	rs897604	A	G	2097.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:90,88:0.49:178
chr3	183536063	rs894000	T	C	852.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:28,38:0.58:66
chr3	183543291	rs263006	G	A	514.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.969;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.17;ReadPosRankSum=0.777;SOR=0.575;set=HC	GT:AD:AF:DP	0/1:34,29:0.46:63
chr3	183558402	rs3732581	C	G	1766.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.007;ClippingRankSum=0.000;DB;DP=203;ExcessHet=3.0103;FS=1.094;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.056;QD=8.88;ReadPosRankSum=0.529;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:104,95:0.48:199
chr3	183560195	rs13091	A	G	683.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.173;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=0.687;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.10;ReadPosRankSum=1.449;SOR=0.617;set=HC	GT:AD:AF:DP	0/1:92,42:0.31:134
chr3	183560292	rs7652031	A	T	633.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:83,38:0.31:121
chr3	183562276	rs3811725	A	C	180.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:14,9:0.39:23
chr3	183604723	rs1829515	A	G	2356.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:133,118:0.47:251
chr3	183604801	rs4420923	G	T	1132.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:41,54:0.57:95
chr3	183643585	rs56348509	T	C	705.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:31,29:0.48:60
chr3	183660585	rs3749442	G	A	4654.77	.	AC=1;AF=0.500;AN=2;DB;DP=482;set=Intersection	GT:AD:AF:DP	0/1:242,223:0.48:465
chr3	183663833	rs2292998	T	C	6460.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr3	183669396	rs4148586	C	T	662.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:35,30:0.46:65
chr3	183669932	.	CTT	C	225.82	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.605;ClippingRankSum=-0.000;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.89;ReadPosRankSum=-1.264;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:6,13:0.68:19
chr3	183677501	rs4148584	A	C	1486.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.702;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=3.731;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.41;ReadPosRankSum=0.898;SOR=1.008;set=HC	GT:AD:AF:DP	0/1:83,75:0.47:158
chr3	183679532	rs6443924	A	G	7347.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:1,252:1.00:253
chr3	183679574	.	A	AT	30.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.671;ClippingRankSum=0.000;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.37;ReadPosRankSum=1.319;SOR=0.553;set=HC	GT:AD:AF:DP	0/1:69,14:0.17:83
chr3	183682897	rs1879257	G	A	659.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:10,26:0.72:36
chr3	183685534	rs939336	A	G	11088.77	.	AC=2;AF=1.00;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	1/1:4,423:0.99:427
chr3	183695508	rs116583553	G	A	2861.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:89,134:0.60:223
chr3	183696402	rs1132776	A	G	6892.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr3	183699516	rs7636910	T	C	1711.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:72,73:0.50:145
chr3	183699781	rs2872247	A	C	1602.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:58,65:0.53:123
chr3	183700211	rs2293001	C	T	766.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:35,36:0.51:71
chr3	183706630	rs6443926	A	C	2032.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr3	183749731	rs939334	T	C	792.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:23,39:0.63:62
chr3	183753777	rs36092077	G	A	1435.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:101,69:0.41:170
chr3	183754029	rs6792482	T	C	584.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:24,22:0.48:46
chr3	183754294	rs6443930	G	C	1557.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:105,76:0.42:181
chr3	183754768	rs71318351	G	A	1412.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:60,62:0.51:122
chr3	183755822	rs1000952	G	A	7227.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr3	183756426	rs6799766	T	C	12333.77	.	AC=2;AF=1.00;AN=2;DB;DP=474;set=Intersection	GT:AD:AF:DP	1/1:0,470:1.00:470
chr3	183756702	rs6789754	G	A	18982.77	.	AC=2;AF=1.00;AN=2;DB;DP=702;set=Intersection	GT:AD:AF:DP	1/1:1,700:1.00:701
chr3	183756742	rs55674402	C	T	8086.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.898;ClippingRankSum=0.000;DB;DP=909;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.29;MQRankSum=-1.119;QD=8.91;ReadPosRankSum=0.389;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:499,409:0.45:908
chr3	183756780	rs6765152	A	C	21152.77	.	AC=2;AF=1.00;AN=2;DB;DP=785;set=Intersection	GT:AD:AF:DP	1/1:1,783:1.00:784
chr3	183756808	rs6789882	G	A	22055.77	.	AC=2;AF=1.00;AN=2;DB;DP=605;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.46;SOR=1.130;set=HC	GT:AD:AF:DP	1/1:0,605:1.00:605
chr3	183756808	.	GAGAAC	AAGAAC,AAGAAT	2755	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.53;FR=0.5000,0.5000;HP=2;HapScore=2;MGOF=212;MMLQ=27;MQ=59.99;NF=145,76;NR=245,133;PP=2755,2719;QD=20;SC=CTTTTTGCCAGAGAACTCCAG;SbPval=0.49;Source=Platypus;TC=394;TCF=145;TCR=249;TR=390,209;WE=183756821;WS=183756798;set=Platypus	GT:AF:DP	0/1:0.99:394
chr3	183756813	rs6789682	C	T	6748.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.254;ClippingRankSum=0.000;DB;DP=567;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.90;ReadPosRankSum=0.068;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:253,314:0.55:567
chr3	183756836	rs11274156	A	AT,ATGTCAGTCCAAAT	16041.73	.	AC=2,0;AF=1.00,0.00;ALERT;AN=2;DB;DP=378;set=Intersection	GT:AF:DP	1/1:1.00:365
chr3	183756837	.	G	T	2965	.	AC=2;AF=1.00;AN=2;BRF=0.51;FR=1.0000;HP=1;HapScore=1;MGOF=57;MMLQ=28;MQ=60.0;NF=29;NR=125;PP=2965;QD=20;SC=CAGGCTCTCAGTCAGCCTTGT;SbPval=0.44;Source=Platypus;TC=179;TCF=32;TCR=147;TR=154;WE=183756848;WS=183756826;set=Platypus	GT:AD:AF:DP	1/1:25,154:0.86:179
chr3	183756837	rs66883074	G	GTCAGTCCAAATT	7784.73	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=0.749;ClippingRankSum=0.000;DB;DP=333;ExcessHet=3.0103;FS=2.685;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=30.41;ReadPosRankSum=0.078;SOR=1.813;set=HC	GT:AD:AF:DP	1/1:3,253:0.99:256
chr3	183756897	rs55953689	A	G	899.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:43,36:0.46:79
chr3	183773250	rs56333453	C	T	1685.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:83,75:0.47:158
chr3	183774872	rs11432832	G	GA	3042.73	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:126,119:0.49:245
chr3	183776469	rs7617316	C	T	1371.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:57,65:0.53:122
chr3	183777210	rs56244916	C	T	1397.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:55,55:0.50:110
chr3	183818416	rs7627615	G	A	5619.77	.	AC=1;AF=0.500;AN=2;DB;DP=498;set=Intersection	GT:AD:AF:DP	0/1:226,267:0.54:493
chr3	183818511	rs55683908	A	G	1585.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:76,69:0.48:145
chr3	183819155	rs7432211	T	C	7066.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr3	183822504	.	CAAA	C	738.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.403;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;FS=5.863;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=27.36;ReadPosRankSum=1.120;SOR=2.225;set=HC	GT:AD:AF:DP	1/1:1,26:0.96:27
chr3	183823576	rs4912524	T	C	7497.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr3	183823863	rs150341032	G	GAAGA	9412.73	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr3	183856549	rs6787322	A	G	967.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr3	183857809	.	CA	C	145.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.730;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=6.474;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.43;ReadPosRankSum=-0.643;SOR=0.114;set=HC	GT:AD:AF:DP	0/1:38,22:0.37:60
chr3	183861750	rs843357	A	C	472.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:18,22:0.55:40
chr3	183884550	rs73185720	T	C	3375.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:127,138:0.52:265
chr3	183896641	rs2231216	T	C	1179.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:68,53:0.44:121
chr3	183899832	rs8478	C	T	2711.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:174,138:0.44:312
chr3	183900729	rs843365	T	C	2442.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:120,126:0.51:246
chr3	183900836	rs843364	G	A	862.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:40,38:0.49:78
chr3	183901281	rs2231224	G	A	1762.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:91,87:0.49:178
chr3	183903937	rs60293594	G	GC	3765.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.594;ClippingRankSum=0.000;DB;DP=221;ExcessHet=3.0103;FS=26.354;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.354;QD=17.35;ReadPosRankSum=-0.837;SOR=0.110;set=HC	GT:AD:AF:DP	0/1:103,114:0.53:217
chr3	183904167	.	C	T	3856.77	.	AC=1;AF=0.500;AN=2;DP=310;set=Intersection	GT:AD:AF:DP	0/1:129,175:0.58:304
chr3	183904226	rs56351888	C	T	1818.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.448;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=0.775;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.55;ReadPosRankSum=2.625;SOR=0.559;set=HC	GT:AD:AF:DP	0/1:75,50:0.40:125
chr3	183904232	rs1709624	T	A	1925.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.137;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=0.725;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.41;ReadPosRankSum=0.736;SOR=0.604;set=HC	GT:AD:AF:DP	0/1:71,54:0.43:125
chr3	183904520	rs55940723	T	C	3708.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:176,169:0.49:345
chr3	183906515	rs843345	T	C	2926.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:107,129:0.55:236
chr3	183907032	rs843344	G	C	1830.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:119,85:0.42:204
chr3	183908761	rs7614381	C	T	1201.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:54,48:0.47:102
chr3	183909143	rs28673709	G	A	593.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:25,24:0.49:49
chr3	183948663	rs1687225	G	A	142.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:14,8:0.36:22
chr3	183951135	rs729377	C	T	6492.77	.	AC=1;AF=0.500;AN=2;DB;DP=555;set=Intersection	GT:AD:AF:DP	0/1:256,292:0.53:548
chr3	183951431	rs902417	C	T	1380.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:82,67:0.45:149
chr3	183952773	rs9853525	C	T	1651.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:67,68:0.50:135
chr3	183953972	rs1709657	G	A	1951.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:61,87:0.59:148
chr3	183955109	rs843334	C	T	5292.77	.	AC=1;AF=0.500;AN=2;DB;DP=504;set=Intersection	GT:AD:AF:DP	0/1:250,253:0.50:503
chr3	183957095	rs843333	A	C	258.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:18,12:0.40:30
chr3	183957467	rs843332	G	T	3860.77	.	AC=1;AF=0.500;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	0/1:206,179:0.46:385
chr3	183959508	rs28606531	A	C	1907.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:102,95:0.48:197
chr3	183959961	rs2668195	A	G	1211.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:43,52:0.55:95
chr3	183960252	rs706584	A	C	961.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:36,41:0.53:77
chr3	183975365	rs7633387	C	T	10687.77	.	AC=2;AF=1.00;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	1/1:0,398:1.00:398
chr3	183976103	rs11546878	C	T	3282.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:127,146:0.53:273
chr3	183976108	rs902415	T	C	3053.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:160,145:0.48:305
chr3	183976241	rs6767237	A	G	5620.77	.	AC=1;AF=0.500;AN=2;DB;DP=511;set=Intersection	GT:AD:AF:DP	0/1:243,253:0.51:496
chr3	183978846	rs843352	G	A	292.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:23,14:0.38:37
chr3	183994536	rs843371	A	G	7304.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr3	183995341	rs1001817	C	T	1288.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:50,53:0.51:103
chr3	183995854	rs2272471	G	A	2132.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:107,105:0.50:212
chr3	183996068	rs3752904	C	T	2749.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:168,133:0.44:301
chr3	183996213	rs843372	C	T	3053.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr3	183996484	rs140658066	CTTTCTTCT	C	1055.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.089;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=1.102;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.317;QD=13.20;ReadPosRankSum=0.591;SOR=0.855;set=HC	GT:AD:AF:DP	0/1:50,30:0.38:80
chr3	183996511	rs1387976	C	T	1043.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.740;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=3.025;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.81;ReadPosRankSum=-0.208;SOR=1.292;set=HC	GT:AD:AF:DP	0/1:38,28:0.42:66
chr3	184003194	rs1687230	C	T	974.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:24,39:0.62:63
chr3	184010048	rs3914188	G	C	11388.77	.	AC=2;AF=1.00;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	1/1:0,412:1.00:412
chr3	184020100	rs71185698	C	CA	1625.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr3	184020542	rs11545169	G	T	1859.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:77,85:0.52:162
chr3	184033408	rs73187631	A	T	3278.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:160,146:0.48:306
chr3	184037533	rs13319149	A	G	11941.77	.	AC=2;AF=1.00;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	1/1:0,461:1.00:461
chr3	184038482	rs34838305	G	A	3854.77	.	AC=1;AF=0.500;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	0/1:186,187:0.50:373
chr3	184038969	rs4912537	C	T	973.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:41,44:0.52:85
chr3	184039666	rs2178403	A	G	15066.77	.	AC=2;AF=1.00;AN=2;DB;DP=523;set=Intersection	GT:AD:AF:DP	1/1:0,514:1.00:514
chr3	184045799	rs939317	A	G	7044.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr3	184046355	rs1879244	C	T	3182.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr3	184046470	rs2230571	C	T	2495.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:122,122:0.50:244
chr3	184056101	rs1881973	G	C	2172.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:50,91:0.65:141
chr3	184056275	rs115148262	G	T	4269.77	.	AC=1;AF=0.500;AN=2;DB;DP=474;set=Intersection	GT:AD:AF:DP	0/1:247,224:0.48:471
chr3	184062776	rs9839000	A	G	3208.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:126,145:0.54:271
chr3	184070675	rs3749223	A	G	1708.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:79,79:0.50:158
chr3	184071017	rs41266265	G	A	12710.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.579;ClippingRankSum=0.000;DB;DP=654;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.71;ReadPosRankSum=1.391;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:316,329:0.51:645
chr3	184071017	.	GTT	ATC	2944	.	AC=1;AF=0.500;AN=2;BRF=0.46;FR=0.5000;HP=3;HapScore=1;MGOF=10;MMLQ=28;MQ=60.0;NF=97;NR=117;PP=2944;QD=20;SC=TTTAGGAAGCGTTTGTGGCTT;SbPval=0.51;Source=Platypus;TC=416;TCF=186;TCR=230;TR=214;WE=184071027;WS=184071007;set=Platypus	GT:AD:AF:DP	1/0:202,214:0.51:416
chr3	184071019	rs11920716	T	C	12710.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.487;ClippingRankSum=0.000;DB;DP=646;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.95;ReadPosRankSum=1.526;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:312,325:0.51:637
chr3	184071063	rs9820367	G	C	5920.77	.	AC=1;AF=0.500;AN=2;DB;DP=517;set=Intersection	GT:AD:AF:DP	0/1:241,274:0.53:515
chr3	184072459	rs73189624	G	A	3144.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.023;ClippingRankSum=0.000;DB;DP=311;ExcessHet=3.0103;FS=22.988;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.11;ReadPosRankSum=4.432;SOR=0.242;set=HC	GT:AD:AF:DP	0/1:118,165:0.58:283
chr3	184075958	rs41266271	C	T	3630.77	.	AC=1;AF=0.500;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	0/1:179,168:0.48:347
chr3	184090266	rs6141	C	T	573.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:32,28:0.47:60
chr3	184091149	rs6142	G	T	1560.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:116,80:0.41:196
chr3	184094183	rs956732	A	G	1144.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:52,44:0.46:96
chr3	184098193	rs1920128	A	C	956.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:30,45:0.60:75
chr3	184098647	rs885650	C	T	2253.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:100,100:0.50:200
chr3	184099378	rs35929225	C	A	6206.77	.	AC=1;AF=0.500;AN=2;DB;DP=616;set=Intersection	GT:AD:AF:DP	0/1:311,288:0.48:599
chr3	184100961	rs3833587	G	GT	1517.73	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:29,47:0.62:76
chr3	184106025	.	GTCCA	G	342	.	AC=2;AF=1.00;AN=2;BRF=0.38;FR=1.0000;HP=2;HapScore=2;MGOF=7;MMLQ=21;MQ=60.47;NF=3;NR=5;PP=342;QD=43.375;SC=CCATCCATCCGTCCATCCATC;SbPval=0.24;Source=Platypus;TC=14;TCF=3;TCR=11;TR=8;WE=184106036;WS=184106015;set=Platypus	GT:AD:AF:DP	1/1:6,8:0.57:14
chr3	184106217	rs1881972	A	G	497.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:23,24:0.51:47
chr3	184293564	rs7640497	C	T	774.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:42,32:0.43:74
chr3	184293610	rs9823034	T	C	1379.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:107,61:0.36:168
chr3	184293769	rs7652597	T	C	5703.77	.	AC=1;AF=0.500;AN=2;DB;DP=539;set=Intersection	GT:AD:AF:DP	0/1:271,262:0.49:533
chr3	184295008	rs7644069	C	A	1787.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:92,82:0.47:174
chr3	184295828	rs4072650	C	A	3591.77	.	AC=1;AF=0.500;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	0/1:232,181:0.44:413
chr3	184295921	rs4072651	C	T	1747.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.662;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=2.597;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.61;ReadPosRankSum=1.370;SOR=0.956;set=HC	GT:AD:AF:DP	0/1:65,47:0.42:112
chr3	184295921	.	CCA	TCG	1692	.	AC=1;AF=0.500;AN=2;BRF=0.37;FR=0.5000;HP=4;HapScore=2;MGOF=8;MMLQ=24;MQ=60.0;NF=9;NR=30;PP=1692;QD=44.7555865349;SC=CCTCCTGGGGCCAGCCGTTGC;SbPval=0.83;Source=Platypus;TC=95;TCF=29;TCR=66;TR=39;WE=184295931;WS=184295911;set=Platypus	GT:AD:AF:DP	0/1:56,39:0.41:95
chr3	184295923	rs4072652	A	G	1747.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.290;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.781;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.18;ReadPosRankSum=0.871;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:61,47:0.44:108
chr3	184299068	rs9881589	G	A	10410.77	.	AC=1;AF=0.500;AN=2;DB;DP=869;set=Intersection	GT:AD:AF:DP	0/1:392,467:0.54:859
chr3	184299167	rs1138510	T	C	6980.77	.	AC=1;AF=0.500;AN=2;DB;DP=559;set=Intersection	GT:AD:AF:DP	0/1:250,302:0.55:552
chr3	184299414	rs2230596	C	T	2538.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:105,119:0.53:224
chr3	184428903	rs9872799	T	G	14612.77	.	AC=2;AF=1.00;AN=2;DB;DP=546;set=Intersection	GT:AD:AF:DP	1/1:1,534:1.00:535
chr3	184429133	rs10656187	A	ATCC	15906.73	.	AC=2;AF=1.00;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	1/1:10,362:0.97:372
chr3	184429414	rs10937187	C	A	11729.77	.	AC=2;AF=1.00;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	1/1:0,417:1.00:417
chr3	184542693	rs71298576	A	AT	664.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.740;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=7.895;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.038;QD=4.82;ReadPosRankSum=0.054;SOR=0.232;set=HC	GT:AD:AF:DP	0/1:70,68:0.49:138
chr3	184550501	rs9830734	A	G	1200.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:52,59:0.53:111
chr3	184560969	rs16859344	T	C	365.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:24,16:0.40:40
chr3	184561140	rs11384502	G	GA	542.73	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:43,32:0.43:75
chr3	184567039	rs2305240	C	A	1691.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:73,74:0.50:147
chr3	184573555	rs6443999	C	T	3577.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:175,176:0.50:351
chr3	184577917	rs7340698	A	G	200.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:13,10:0.43:23
chr3	184580917	rs3733165	A	G	494.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:30,22:0.42:52
chr3	184588420	rs2305239	A	C	1607.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:51,63:0.55:114
chr3	184616504	rs9845800	C	T	425.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:15,19:0.56:34
chr3	184631103	rs9821657	G	A	143.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:17,9:0.35:26
chr3	184633247	rs4686879	A	C	798.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:39,39:0.50:78
chr3	184642587	rs11391596	A	AT	1562.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.485;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.32;ReadPosRankSum=-2.248;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:43,95:0.69:138
chr3	184647413	rs4643688	T	C	3625.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr3	184654166	rs6444004	A	G	4131.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr3	184658058	rs142586532	T	TTA,TTATA	488.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=19;set=Intersection	GT:AF:DP	1/2:0.43,0.57:14
chr3	184675095	rs3732934	C	T	896.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:29,37:0.56:66
chr3	184675147	rs3832240	CTTTTA	C	3656.73	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:95,96:0.50:191
chr3	184675359	rs4501092	T	C	7228.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr3	184682214	rs6799328	T	C	274.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:17,13:0.43:30
chr3	184684313	rs4470487	G	A	504.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr3	184700356	rs4572747	A	C	8839.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.47;SOR=0.931;set=HC	GT:AD:AF:DP	1/1:0,334:1.00:334
chr3	184700426	rs11555405	C	T	3225.77	.	AC=1;AF=0.500;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	0/1:205,168:0.45:373
chr3	184714014	rs9860814	C	T	2752.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr3	184717703	rs2291737	T	C	1749.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr3	184766148	rs3821748	A	G	2266.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:112,110:0.50:222
chr3	184766186	rs3821749	A	C	3134.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:156,143:0.48:299
chr3	184766249	rs6779564	TC	CT	6288.77	.	AC=1;AF=0.500;AN=2;DB;DP=353;JOINED;set=Intersection	GT:AD:AF:DP	0/1:176,164:0.48:340
chr3	184766392	rs3821751	G	A	2191.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:101,105:0.51:206
chr3	184769911	rs2271257	C	T	322.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:22,14:0.39:36
chr3	184801494	rs9845482	G	A	469.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr3	184907503	.	CT	C	463.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.053;ClippingRankSum=0.000;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=1.650;QD=10.54;ReadPosRankSum=0.922;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:7,37:0.84:44
chr3	184935807	rs35531967	A	C	3132.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr3	184971024	.	TA	T	285.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.063;ClippingRankSum=0.000;DP=138;ExcessHet=3.0103;FS=3.346;MLEAC=1;MLEAF=0.500;MQ=59.83;MQRankSum=0.000;QD=2.83;ReadPosRankSum=-0.231;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:61,40:0.40:101
chr3	184971549	.	TA	T	118.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.168;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;FS=1.982;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.64;ReadPosRankSum=0.529;SOR=1.292;set=HC	GT:AD:AF:DP	0/1:28,17:0.38:45
chr3	185046909	rs34308085	AT	A	3382.73	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:1,157:0.99:158
chr3	185046975	rs9863304	T	C	7476.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr3	185155430	rs113427759	C	CT	966.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.155;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=1.553;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=0.000;QD=14.87;ReadPosRankSum=1.954;SOR=0.358;set=HC	GT:AD:AF:DP	1/1:9,56:0.86:65
chr3	185212593	rs6798873	T	C	3849.77	.	AC=1;AF=0.500;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	0/1:165,182:0.52:347
chr3	185216813	.	G	C	1406.77	.	AC=1;AF=0.500;AN=2;DP=127;set=Intersection	GT:AD:AF:DP	0/1:65,59:0.48:124
chr3	185229464	rs61730237	T	C	3695.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:168,176:0.51:344
chr3	185232169	rs1837882	G	A	1950.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:76,88:0.54:164
chr3	185253024	.	A	G	1941.77	.	AC=1;AF=0.500;AN=2;DP=161;set=Intersection	GT:AD:AF:DP	0/1:79,80:0.50:159
chr3	185300395	rs7651346	G	A	1624.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:102,76:0.43:178
chr3	185300589	rs17289918	T	C	5418.77	.	AC=1;AF=0.500;AN=2;DB;DP=579;set=Intersection	GT:AD:AF:DP	0/1:294,281:0.49:575
chr3	185304018	rs17523471	T	C	10770.77	.	AC=2;AF=1.00;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	1/1:2,407:1.00:409
chr3	185307879	rs11924016	A	T	1651.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.952;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=3.874;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=27.08;ReadPosRankSum=0.768;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:1,60:0.98:61
chr3	185308069	rs11916386	G	T	575.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr3	185316123	rs74466592	G	A	1307.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:45,55:0.55:100
chr3	185318804	rs13100034	G	A	1403.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr3	185330304	rs62877061	TTGA	T	4470.73	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:1,102:0.99:103
chr3	185331165	rs6762208	C	A	2824.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr3	185335156	rs34765114	T	A	3130.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr3	185335162	rs113404329	GT	G	1562.73	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:44,46:0.51:90
chr3	185337374	.	G	A	636.77	.	AC=1;AF=0.500;AN=2;DP=67;set=Intersection	GT:AD:AF:DP	0/1:37,27:0.42:64
chr3	185339575	rs13076556	A	G	1455.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:75,72:0.49:147
chr3	185341970	rs1823238	G	A	11216.77	.	AC=2;AF=1.00;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	1/1:3,421:0.99:424
chr3	185341987	rs5855069	CT	C	2337.73	.	AC=1;AF=0.500;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	0/1:156,149:0.49:305
chr3	185347363	rs62929960	CAA	C	647.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.163;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.41;MQRankSum=1.077;QD=12.70;ReadPosRankSum=0.803;SOR=0.929;set=HC	GT:AD:AF:DP	0/1:21,30:0.59:51
chr3	185347459	rs6774871	A	G	6599.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr3	185649666	rs144330881	G	A	246.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.091;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=1.377;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.26;ReadPosRankSum=1.723;SOR=0.853;set=HC	GT:AD:AF:DP	0/1:20,14:0.41:34
chr3	185766711	rs79060173	G	A	1814.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:53,71:0.57:124
chr3	185802071	rs11327778	TA	T	148.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.228;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=3.120;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.97;ReadPosRankSum=1.178;SOR=1.300;set=HC	GT:AD:AF:DP	0/1:28,22:0.44:50
chr3	185879296	rs13073156	T	C	2984.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:1,108:0.99:109
chr3	185882643	rs4686741	C	G	4322.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr3	185905876	rs13087397	G	A	1755.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr3	185960192	rs6799929	A	G	508.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr3	185960414	rs12489063	G	A	6818.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr3	185982955	rs3815620	G	A	1180.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:59,52:0.47:111
chr3	185983273	rs11354963	CT	C	373.73	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:26,21:0.45:47
chr3	185990096	rs2193587	C	T	9774.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:0,364:1.00:364
chr3	186006566	rs710443	T	C	6598.77	.	AC=1;AF=0.500;AN=2;DB;DP=564;set=Intersection	GT:AD:AF:DP	0/1:250,311:0.55:561
chr3	186006618	rs1004588	G	C	4106.77	.	AC=1;AF=0.500;AN=2;DB;DP=465;set=Intersection	GT:AD:AF:DP	0/1:254,198:0.44:452
chr3	186015283	rs3819860	A	G	4544.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr3	186015303	rs3819859	A	G	4104.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr3	186015315	rs3819858	T	C	3941.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr3	186015438	rs3819857	C	T	958.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr3	186276393	rs9854418	C	T	986.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.550;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.61;ReadPosRankSum=0.539;SOR=0.630;set=HC	GT:AD:AF:DP	0/1:45,48:0.52:93
chr3	186287777	rs2889755	T	C	1482.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr3	186288565	rs3806714	A	G	4045.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr3	186293820	rs2280390	T	G	5076.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:1,178:0.99:179
chr3	186295417	rs11386781	A	AT	620.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.402;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=2.046;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=0.846;QD=7.96;ReadPosRankSum=-1.981;SOR=0.427;set=HC	GT:AD:AF:DP	0/1:36,42:0.54:78
chr3	186302391	rs140269415	A	AGTGTGTGTGTGT,ATTGTGTGTGTGTGT	3470.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=153;set=Intersection	GT:AF:DP	1/2:0.39,0.61:117
chr3	186314734	rs769324	G	A	1869.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:59,79:0.57:138
chr3	186330745	rs112673334	G	GT	49.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.183;ClippingRankSum=0.000;DB;DP=281;ExcessHet=3.0103;FS=2.268;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.19;ReadPosRankSum=-0.529;SOR=0.508;set=HC	GT:AD:AF:DP	0/1:225,39:0.15:264
chr3	186336176	rs2070635	A	G	1152.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:32,41:0.56:73
chr3	186337713	rs4917	T	C	3460.77	.	AC=1;AF=0.500;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	0/1:191,175:0.48:366
chr3	186337827	rs2518136	T	C	1877.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:78,93:0.54:171
chr3	186338382	rs4918	G	C	3071.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:136,139:0.51:275
chr3	186338425	rs1071592	A	C	5025.77	.	AC=1;AF=0.500;AN=2;DB;DP=499;set=Intersection	GT:AD:AF:DP	0/1:251,240:0.49:491
chr3	186386664	rs5855108	T	TA	1109.73	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:2,52:0.96:54
chr3	186388028	rs2555515	T	C	122.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:4,5:0.56:9
chr3	186393073	rs370566711	GGT	G	316.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.066;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=5.720;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.37;ReadPosRankSum=0.207;SOR=1.877;set=HC	GT:AD:AF:DP	0/1:25,18:0.42:43
chr3	186393093	.	T	TGA	113.73	.	AC=1;AF=0.500;AN=2;DP=95;set=Intersection	GT:AD:AF:DP	0/1:38,11:0.22:49
chr3	186393095	rs2378122	T	A	456.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.528;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=7.853;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.93;ReadPosRankSum=-0.190;SOR=0.128;set=HC	GT:AD:AF:DP	0/1:27,19:0.41:46
chr3	186393095	.	TGT	AGA	864	.	AC=1;AF=0.500;AN=2;BRF=0.41;FR=0.5000;HP=2;HapScore=2;MGOF=20;MMLQ=21;MQ=59.48;NF=5;NR=14;PP=864;QD=48.2877828875;SC=TGTGTGTGTGTGTGAGAGAGA;SbPval=0.42;Source=Platypus;TC=63;TCF=14;TCR=49;TR=19;WE=186393105;WS=186393083;set=Platypus	GT:AD:AF:DP	1/0:44,19:0.30:63
chr3	186393097	rs7428891	T	A	1276.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.384;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=5.072;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.53;ReadPosRankSum=-0.017;SOR=0.113;set=HC	GT:AD:AF:DP	0/1:7,43:0.86:50
chr3	186395180	rs7629680	T	C	39711.77	.	AC=2;AF=1.00;AN=2;DB;DP=1495;set=Intersection	GT:AD:AF:DP	1/1:0,1475:1.00:1475
chr3	186435370	rs1050274	G	A	4740.77	.	AC=1;AF=0.500;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	0/1:212,226:0.52:438
chr3	186438037	rs2304452	T	C	1725.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:58,73:0.56:131
chr3	186445186	rs3841557	G	GA	2711.73	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:79,80:0.50:159
chr3	186445237	rs5030025	A	C	712.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:34,31:0.48:65
chr3	186449582	rs1648698	G	C	1541.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:45,59:0.57:104
chr3	186501284	.	C	G	337.77	.	AC=1;AF=0.500;AN=2;DP=36;set=Intersection	GT:AD:AF:DP	0/1:19,17:0.47:36
chr3	186501502	rs266720	C	A	1629.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.157;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=2.793;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.25;ReadPosRankSum=1.638;SOR=0.943;set=HC	GT:AD:AF:DP	0/1:80,79:0.50:159
chr3	186504148	rs266718	T	C	384.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:21,18:0.46:39
chr3	186509258	.	C	CA	343.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.521;ClippingRankSum=0.000;DP=125;ExcessHet=3.0103;FS=3.650;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.000;QD=3.15;ReadPosRankSum=0.417;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:73,36:0.33:109
chr3	186509517	rs187868	G	A	6643.77	.	AC=1;AF=0.500;AN=2;DB;DP=796;set=Intersection	GT:AD:AF:DP	0/1:452,334:0.42:786
chr3	186519136	rs1648703	A	C	1362.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.678;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.49;ReadPosRankSum=0.495;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:50,38:0.43:88
chr3	186519141	rs1656941	A	C	1312.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.200;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=5.135;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.41;ReadPosRankSum=0.515;SOR=0.114;set=HC	GT:AD:AF:DP	0/1:46,34:0.42:80
chr3	186522293	rs113205972	TA	T	104.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.137;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=1.390;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.748;QD=1.09;ReadPosRankSum=-0.853;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:71,25:0.26:96
chr3	186522633	rs710450	A	C	569.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:21,23:0.52:44
chr3	186782284	rs201770337	A	AT	5818.73	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:2,239:0.99:241
chr3	186938956	rs3733001	C	T	4168.77	.	AC=1;AF=0.500;AN=2;DB;DP=511;set=Intersection	GT:AD:AF:DP	0/1:287,215:0.43:502
chr3	186947410	rs850318	C	T	1135.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr3	186954285	rs710452	A	G	22593.77	.	AC=2;AF=1.00;AN=2;DB;DP=857;set=Intersection	GT:AD:AF:DP	1/1:0,844:1.00:844
chr3	186954324	rs3774268	G	A	7660.77	.	AC=1;AF=0.500;AN=2;DB;DP=775;set=Intersection	GT:AD:AF:DP	0/1:396,372:0.48:768
chr3	186961478	rs710460	A	G	777.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr3	186965268	rs3774275	A	G	839.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:34,40:0.54:74
chr3	186967942	rs2302818	G	A	498.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:26,23:0.47:49
chr3	186969371	rs3214401	C	CG	1524.73	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:34,47:0.58:81
chr3	186969634	rs698092	A	G	572.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:33,26:0.44:59
chr3	186980264	rs710468	C	T	928.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:54,40:0.43:94
chr3	186980285	rs141348175	GGA	G	72.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.52;ReadPosRankSum=-0.256;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:127,14:0.10:141
chr3	187003495	rs698105	A	G	677.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr3	187008945	rs72549153	G	C	1047.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:39,45:0.54:84
chr3	187086081	rs5855133	TCAGA	T	2727.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr3	187086400	rs41268619	C	T	1231.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:44,55:0.56:99
chr3	187088656	rs1047584	C	T	3262.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:175,154:0.47:329
chr3	187088812	rs3821812	C	T	2533.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:142,118:0.45:260
chr3	187088903	rs1533595	C	A	3049.77	.	AC=1;AF=0.500;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	0/1:190,153:0.45:343
chr3	187088926	rs1533594	G	A	10075.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	1/1:0,374:1.00:374
chr3	187089031	rs1003995	C	A	3050.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:136,147:0.52:283
chr3	187416253	rs1523468	C	T	2422.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr3	187416634	rs1973791	C	A	2338.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:119,103:0.46:222
chr3	187416719	rs11707167	T	C	7789.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr3	187419661	rs113681515	G	GCCTGCC	5990.73	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr3	187420445	rs4389470	C	T	4739.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr3	187433611	rs151327931	A	G	193.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:10,9:0.47:19
chr3	187440506	rs1005099	C	A	2498.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:1,94:0.99:95
chr3	187447032	rs1056932	G	A	11381.77	.	AC=2;AF=1.00;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	1/1:0,421:1.00:421
chr3	187447926	rs1491997	C	T	2089.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr3	187451609	rs1880101	A	G	4533.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr3	187451701	rs1880100	T	C	1873.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.58;SOR=3.417;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr3	187451709	rs1880099	C	T	1805.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.04;SOR=3.312;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr3	187896912	rs13096262	G	A	2374.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr3	187897059	rs13096615	G	A	14823.77	.	AC=2;AF=1.00;AN=2;DB;DP=556;set=Intersection	GT:AD:AF:DP	1/1:0,550:1.00:550
chr3	187897424	rs4577458	A	C	3315.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr3	187898294	.	A	C	4398.77	.	AC=1;AF=0.500;AN=2;DP=448;set=Intersection	GT:AD:AF:DP	0/1:237,204:0.46:441
chr3	188202550	rs2067078	A	T	4909.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr3	188202582	rs1559814	G	T	3594.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr3	188242669	rs200398269	TTCCTTCCTTCCGTCCG	T	365.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.022;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=2.006;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.08;ReadPosRankSum=-0.229;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:21,12:0.36:33
chr3	188242673	.	TTCCTTCCGTCCG	T	543.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.391;ClippingRankSum=0.000;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.12;ReadPosRankSum=1.375;SOR=1.276;set=HC	GT:AD:AF:DP	0/1:15,15:0.50:30
chr3	188242697	rs369579197	T	G	541.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.895;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=2.127;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.93;ReadPosRankSum=2.035;SOR=1.414;set=HC	GT:AD:AF:DP	0/1:19,15:0.44:34
chr3	188242701	rs138209867	T	G	1220.82	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.234;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=4.928;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=35.91;ReadPosRankSum=1.067;SOR=3.193;set=HC	GT:AD:AF:DP	1/1:3,31:0.91:34
chr3	188242705	rs144299808	T	G	502.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.852;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.23;ReadPosRankSum=0.059;SOR=1.005;set=HC	GT:AD:AF:DP	0/1:22,16:0.42:38
chr3	188326926	rs148971918	C	CT	1975.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.155;ClippingRankSum=0.000;DB;DP=250;ExcessHet=3.0103;FS=1.733;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.10;ReadPosRankSum=1.477;SOR=0.860;set=HC	GT:AD:AF:DP	0/1:129,115:0.47:244
chr3	188327461	rs1059380	C	T	7190.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr3	188464248	rs3830584	G	GT	3656.73	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:118,118:0.50:236
chr3	188478197	rs3841956	G	GGTGT	1189.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.264;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.61;MQRankSum=0.932;QD=41.03;ReadPosRankSum=1.407;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:6,23:0.79:29
chr3	188478227	rs9844848	T	C	353.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.704;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=1.966;MLEAC=1;MLEAF=0.500;MQ=60.43;MQRankSum=-1.157;QD=7.22;ReadPosRankSum=0.942;SOR=1.547;set=HC	GT:AD:AF:DP	0/1:29,20:0.41:49
chr3	188478235	rs9844854	T	C	1438.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr3	188584186	rs1877547	G	A	2527.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:121,125:0.51:246
chr3	188590358	rs4687001	C	T	2573.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:156,126:0.45:282
chr3	188590446	rs1136644	A	G	3545.77	.	AC=1;AF=0.500;AN=2;DB;DP=466;set=Intersection	GT:AD:AF:DP	0/1:274,187:0.41:461
chr3	188933213	rs3821734	C	T	860.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:67,43:0.39:110
chr3	188937307	rs5855244	G	GA	641.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.269;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=2.647;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.06;ReadPosRankSum=0.502;SOR=0.238;set=HC	GT:AD:AF:DP	0/1:14,44:0.76:58
chr3	188956822	rs16864142	A	G	110.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:7,5:0.42:12
chr3	189028117	rs11425320	A	AT	530.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.063;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=0.910;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.83;ReadPosRankSum=-1.826;SOR=0.548;set=HC	GT:AD:AF:DP	0/1:45,46:0.51:91
chr3	189028413	.	CAAAATAAAAT	C	419	.	AC=1;AF=0.500;AN=2;BRF=0.22;FR=0.5000;HP=8;HapScore=1;MGOF=0;MMLQ=28;MQ=60.77;NF=0;NR=2;PP=419;QD=214.0;SC=CTAAACAAAACAAAATAAAAT;SbPval=1.0;Source=Platypus;TC=11;TCF=0;TCR=11;TR=2;WE=189028430;WS=189028403;set=Platypus	GT:AD:AF:DP	1/0:9,2:0.18:11
chr3	189033292	rs6773831	C	G	4137.77	.	AC=1;AF=0.500;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	0/1:171,192:0.53:363
chr3	189033377	rs62289687	A	G	3550.77	.	AC=1;AF=0.500;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	0/1:226,168:0.43:394
chr3	189038648	rs1055152	T	C	3602.77	.	AC=1;AF=0.500;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	0/1:166,177:0.52:343
chr3	189349247	rs28673064	A	T	3215.77	.	AC=1;AF=0.500;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	0/1:169,152:0.47:321
chr3	189507518	rs34201045	C	CAGAG	1956.73	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:113,51:0.31:164
chr3	189547652	rs1515491	A	G	265.53	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:1,9:0.90:10
chr3	189582241	rs17514215	T	G	705.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:44,31:0.41:75
chr3	189587274	rs6790167	A	G	4381.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr3	189590824	rs9840359	G	C	3717.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr3	189604149	rs1554131	T	G	11376.77	.	AC=2;AF=1.00;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	1/1:0,437:1.00:437
chr3	189604160	rs1345186	T	C	13452.77	.	AC=2;AF=1.00;AN=2;DB;DP=494;set=Intersection	GT:AD:AF:DP	1/1:0,484:1.00:484
chr3	189625025	.	CTT	C	176.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.373;ClippingRankSum=0.000;DP=48;ExcessHet=3.0103;FS=6.662;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.93;ReadPosRankSum=1.689;SOR=0.069;set=HC	GT:AD:AF:DP	0/1:32,13:0.29:45
chr3	189689904	rs710543	A	G	2596.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr3	189690861	rs710545	T	A	2590.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr3	189702200	rs710558	T	C	1892.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr3	189702395	rs11311050	TA	T	2157.73	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:5,116:0.96:121
chr3	189705268	rs11354217	TA	T	444.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.659;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.405;QD=2.73;ReadPosRankSum=0.323;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:95,68:0.42:163
chr3	189705542	rs3114672	A	G	4948.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr3	189712010	rs1719600	G	A	2926.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:189,149:0.44:338
chr3	189712089	rs1719599	GG	AA	6642.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr3	189712094	rs139834656	A	AAAAC	1315.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.473;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=0.900;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=2.004;QD=16.45;ReadPosRankSum=1.276;SOR=0.559;set=HC	GT:AD:AF:DP	0/1:45,35:0.44:80
chr3	189837993	rs710596	G	A	1137.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:45,53:0.54:98
chr3	190026383	rs12629166	C	T	314.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:18,14:0.44:32
chr3	190030680	rs9869263	A	G	7667.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:1,296:1.00:297
chr3	190106071	rs368234054	AG	A	23899.73	.	AC=2;AF=1.00;AN=2;DB;DP=553;set=Intersection	GT:AD:AF:DP	1/1:0,530:1.00:530
chr3	190106074	rs3214506	G	C	23908.77	.	AC=2;AF=1.00;AN=2;DB;DP=545;set=Intersection	GT:AD:AF:DP	1/1:0,537:1.00:537
chr3	190106242	rs1491994	T	C	7185.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr3	190106332	rs1491993	T	A	1560.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr3	190157898	rs6767754	G	A	3282.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr3	190165800	rs1346016	T	G	351.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:16,15:0.48:31
chr3	190333162	rs35429399	TG	T	2500.73	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:104,93:0.47:197
chr3	190338039	rs11368884	C	CT,CTT	549.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.778;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=2.471;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=11.70;ReadPosRankSum=-0.397;SOR=1.708;set=HC	GT:AD:AF:DP	1/2:11,17,19:0.36,0.40:47
chr3	190338270	rs115290893	A	G	2621.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:173,131:0.43:304
chr3	190341241	rs4687160	C	A	2603.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:135,125:0.48:260
chr3	190341292	rs4687161	C	T	1179.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:48,48:0.50:96
chr3	190345098	rs34908328	GT	G	1219.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.840;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=2.073;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=2.013;QD=7.58;ReadPosRankSum=-0.240;SOR=0.518;set=HC	GT:AD:AF:DP	0/1:80,81:0.50:161
chr3	190347391	rs7611887	C	T	1323.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:66,63:0.49:129
chr3	190362220	rs34590034	A	T	962.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:94,52:0.36:146
chr3	190580219	rs187883879	G	A	1327.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.238;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=-0.970;QD=9.91;ReadPosRankSum=0.174;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:68,66:0.49:134
chr3	190594309	rs9880320	G	A	1417.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:97,75:0.44:172
chr3	190594334	rs9842242	A	G	1465.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:101,78:0.44:179
chr3	190594452	rs9842514	A	C	1452.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:53,70:0.57:123
chr3	190967718	rs34754526	TA	T	959.73	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:37,41:0.53:78
chr3	190967779	rs2034771	A	G	2324.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:115,115:0.50:230
chr3	190980797	rs7644510	A	G	2209.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr3	190986110	rs10804933	C	T	554.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr3	190986388	rs6794154	C	T	341.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr3	190991384	rs9857697	G	A	8534.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:0,325:1.00:325
chr3	190991439	rs9877400	T	C	5513.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr3	190995847	rs3214008	T	C	2533.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr3	190999790	rs6444533	A	G	2512.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:2,86:0.98:88
chr3	190999872	rs6444534	G	A	8496.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:2,319:0.99:321
chr3	190999917	rs6788319	C	A	9417.77	.	AC=2;AF=1.00;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	1/1:3,389:0.99:392
chr3	190999990	rs6444535	C	T	7107.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr3	191047532	rs9847278	A	G	2205.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:128,111:0.46:239
chr3	191074796	.	TA	T	182.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.801;ClippingRankSum=0.000;DP=113;ExcessHet=3.0103;FS=4.329;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.65;ReadPosRankSum=1.309;SOR=0.363;set=HC	GT:AD:AF:DP	0/1:84,27:0.24:111
chr3	191074873	rs188384	C	G	2566.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:115,122:0.51:237
chr3	191075012	rs1520203	G	T	1528.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:142,79:0.36:221
chr3	191075656	rs13434281	G	A	1074.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:56,48:0.46:104
chr3	191075902	rs11542549	C	T	2918.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:141,132:0.48:273
chr3	191087546	rs4677632	A	G	1353.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.987;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=3.296;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.38;ReadPosRankSum=-0.361;SOR=1.161;set=HC	GT:AD:AF:DP	0/1:52,36:0.41:88
chr3	191087551	rs697905	G	A	1450.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.345;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=4.409;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.11;ReadPosRankSum=-1.247;SOR=1.200;set=HC	GT:AD:AF:DP	0/1:55,41:0.43:96
chr3	191093053	rs2028572	T	C	3122.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:140,136:0.49:276
chr3	191093175	rs2028574	T	A	4927.77	.	AC=1;AF=0.500;AN=2;DB;DP=532;set=Intersection	GT:AD:AF:DP	0/1:279,241:0.46:520
chr3	191093310	rs4677728	A	G	2295.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:117,104:0.47:221
chr3	191093384	rs4677729	A	G	821.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:73,39:0.35:112
chr3	191093434	rs293806	A	G	173.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:38,11:0.22:49
chr3	191093475	rs4677730	T	C	116.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:14,7:0.33:21
chr3	191097908	rs293812	C	T	543.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.263;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=1.057;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=1.081;QD=8.63;ReadPosRankSum=1.412;SOR=0.459;set=HC	GT:AD:AF:DP	0/1:33,30:0.48:63
chr3	191097928	rs34031057	G	GT	553.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.962;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=1.536;QD=5.77;ReadPosRankSum=0.045;SOR=0.742;set=HC	GT:AD:AF:DP	0/1:45,51:0.53:96
chr3	191097966	rs293813	T	C	1407.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:85,76:0.47:161
chr3	191098121	rs293814	C	T	788.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:56,38:0.40:94
chr3	191098731	rs211043	G	A	2600.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:155,130:0.46:285
chr3	191100448	rs383529	G	T	533.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:39,24:0.38:63
chr3	191100561	rs364519	C	A	2980.77	.	AC=1;AF=0.500;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	0/1:179,147:0.45:326
chr3	191107192	rs436393	A	G	2327.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:89,111:0.56:200
chr3	191178925	rs539897	G	A	1521.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr3	191179193	rs293833	A	G	10962.77	.	AC=2;AF=1.00;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	1/1:0,404:1.00:404
chr3	191179303	rs176823	C	T	5103.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr3	191888452	rs34265167	GA	G	562.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.074;ClippingRankSum=0.000;DB;DP=349;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=2.810;QD=1.97;ReadPosRankSum=1.593;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:200,85:0.30:285
chr3	192125768	rs2249551	A	G	2358.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:77,108:0.58:185
chr3	192444905	rs79987219	G	T	2036.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:73,90:0.55:163
chr3	192635348	rs9819230	C	G	1510.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr3	192973318	.	AGTCTTTAATATAGAATGCAGTCTCAATAAATTCTGTATCATTCTGCTTTTATGGAT	A	2122.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.303;ClippingRankSum=0.000;DP=139;ExcessHet=3.0103;FS=3.521;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=2.382;QD=15.38;ReadPosRankSum=1.659;SOR=1.078;set=HC	GT:AD:AF:DP	0/1:80,58:0.42:138
chr3	192994757	rs11927848	A	G	464.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr3	193007560	rs12152269	G	A	224.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:15,11:0.42:26
chr3	193016895	rs1878716	T	C	1657.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr3	193017204	rs6805083	C	T	719.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr3	193023585	rs5855481	TA	T	3258.73	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr3	193036739	rs73888251	G	C	807.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:65,39:0.38:104
chr3	193036783	rs73888252	G	A	1537.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:91,79:0.46:170
chr3	193036794	rs6788770	G	C	6393.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr3	193039597	rs61753889	G	A	3199.77	.	AC=1;AF=0.500;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:160,155:0.49:315
chr3	193042776	rs11926955	T	C	6481.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr3	193042964	rs11715170	G	A	508.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:8,21:0.72:29
chr3	193044923	rs1387700	T	C	2694.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr3	193062906	rs6444706	G	A	4604.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr3	193062921	rs116545953	T	C	808.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:72,43:0.37:115
chr3	193068800	rs1038719	G	A	2105.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:65,85:0.57:150
chr3	193069125	rs55658952	G	C	1158.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:37,49:0.57:86
chr3	193069126	rs78984196	A	C	846.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:45,37:0.45:82
chr3	193071888	rs11300573	CA	C	1953.73	.	AC=1;AF=0.500;AN=2;DB;DP=268;MQ=60.12;set=Intersection	GT:AD:AF:DP	0/1:127,131:0.51:258
chr3	193080344	rs12636830	C	T	5368.77	.	AC=1;AF=0.500;AN=2;DB;DP=553;set=Intersection	GT:AD:AF:DP	0/1:280,266:0.49:546
chr3	193080414	rs6797429	C	G	3466.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:121,155:0.56:276
chr3	193081122	rs12637558	G	T	2972.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:171,145:0.46:316
chr3	193081206	rs2367605	G	A	938.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:36,40:0.53:76
chr3	193081830	rs923496	A	G	2859.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr3	193081864	rs923495	G	A	1945.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:79,87:0.52:166
chr3	193081866	rs4386441	T	A	1779.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:87,82:0.49:169
chr3	193090101	rs57458521	A	AGG	2784.73	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=64.55;QD=39.22;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:1,70:0.99:71
chr3	193090255	rs2171848	C	T	6671.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.13;QD=42.50;SOR=1.521;set=HC	GT:AD:AF:DP	1/1:0,157:1.00:157
chr3	193090260	rs6444712	T	C	6450.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.14;QD=46.08;SOR=1.678;set=HC	GT:AD:AF:DP	1/1:0,140:1.00:140
chr3	193096529	rs4687419	C	T	2305.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:89,110:0.55:199
chr3	193120359	rs142743757	GA	G	1548.73	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:49,47:0.49:96
chr3	193120726	rs62285692	C	T	213.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:19,13:0.41:32
chr3	193153562	rs1996735	T	C	5012.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr3	193159449	rs12497916	G	A	927.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:40,36:0.47:76
chr3	193171979	rs35424709	T	A	4668.77	.	AC=1;AF=0.500;AN=2;DB;DP=474;set=Intersection	GT:AD:AF:DP	0/1:240,226:0.48:466
chr3	193180400	rs56312820	A	C	927.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:68,40:0.37:108
chr3	193180510	rs62285744	G	T	4823.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.888;ClippingRankSum=0.000;DB;DP=501;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.67;ReadPosRankSum=0.636;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:257,242:0.48:499
chr3	193180592	rs59451116	G	A	5173.77	.	AC=1;AF=0.500;AN=2;DB;DP=455;set=Intersection	GT:AD:AF:DP	0/1:205,248:0.55:453
chr3	193180661	rs60585505	C	T	1648.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:76,76:0.50:152
chr3	193183039	rs7617230	T	C	230.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:12,13:0.52:25
chr3	193183817	rs3796181	A	G	1722.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:104,91:0.47:195
chr3	193201582	rs9842836	C	A	159.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:22,13:0.37:35
chr3	193209178	rs6788448	T	C	3680.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:136,166:0.55:302
chr3	193210768	rs2130407	A	G	932.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:42,42:0.50:84
chr3	193272417	rs9883845	A	G	392.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:12,18:0.60:30
chr3	193272442	rs10530570	CGTGTGTGTGTGT	C,CGTGTGT	1310.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=51;set=Intersection	GT:AF:DP	1/2:0.51,0.46:39
chr3	193332420	rs145894722	C	CTGTG	3612.73	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr3	193334991	rs7624750	G	A	3273.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr3	193336639	rs3772393	T	C	8462.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr3	193355074	rs166850	T	C	4322.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr3	193355102	rs10451941	T	C	3644.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr3	193363695	rs34222475	G	A	201.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr3	193365970	rs144015601	T	A	1847.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.953;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=11.070;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.21;ReadPosRankSum=-0.061;SOR=1.438;set=HC	GT:AD:AF:DP	0/1:96,85:0.47:181
chr3	193365974	rs9831900	T	G	6048.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.00;SOR=1.770;set=HC	GT:AD:AF:DP	1/1:0,168:1.00:168
chr3	193374964	rs9851685	T	C	5113.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr3	193377173	rs34558265	T	C	62.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr3	193383973	rs10804957	A	G	1613.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr3	193384203	rs10937595	T	A	8735.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:1,324:1.00:325
chr3	193386239	rs12494482	C	T	18924.77	.	AC=2;AF=1.00;AN=2;DB;DP=775;set=Intersection	GT:AD:AF:DP	1/1:2,745:1.00:747
chr3	193854148	rs76508827	TA	T	617.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.051;ClippingRankSum=0.000;DB;DP=283;ExcessHet=3.0103;FS=9.553;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.000;QD=2.39;ReadPosRankSum=0.836;SOR=0.272;set=HC	GT:AD:AF:DP	0/1:160,98:0.38:258
chr3	194061906	rs4974538	T	C	9240.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.48;SOR=0.853;set=HC	GT:AD:AF:DP	1/1:0,268:1.00:268
chr3	194061906	.	TG	CA,CG	1553	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.42;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=3;MMLQ=28;MQ=60.0;NF=46,104;NR=35,82;PP=1342,1553;QD=17.2279984551;SC=GGAGCCCTGCTGAGGAGAGAG;SbPval=0.62;Source=Platypus;TC=188;TCF=104;TCR=84;TR=81,186;WE=194061915;WS=194061896;set=Platypus	GT:AF:DP	0/1:0.43:188
chr3	194061907	rs4974539	G	A	2441.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.890;ClippingRankSum=0.000;DB;DP=267;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.25;ReadPosRankSum=0.768;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:148,116:0.44:264
chr3	194062565	rs3732476	C	T	5351.77	.	AC=1;AF=0.500;AN=2;DB;DP=547;set=Intersection	GT:AD:AF:DP	0/1:274,263:0.49:537
chr3	194063153	rs3732474	G	A	5115.77	.	AC=1;AF=0.500;AN=2;DB;DP=470;set=Intersection	GT:AD:AF:DP	0/1:221,238:0.52:459
chr3	194063300	rs62288099	T	C	11376.77	.	AC=2;AF=1.00;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	1/1:0,419:1.00:419
chr3	194080336	rs4974533	G	A	4938.77	.	AC=1;AF=0.500;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	0/1:219,220:0.50:439
chr3	194080616	.	G	A	750.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.592;ClippingRankSum=0.000;DP=309;ExcessHet=3.0103;FS=0.525;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.47;ReadPosRankSum=-1.756;SOR=0.621;set=HC	GT:AD:AF:DP	0/1:243,61:0.20:304
chr3	194080648	rs9682540	G	A	3635.77	.	AC=1;AF=0.500;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	0/1:160,168:0.51:328
chr3	194080696	rs9682541	G	A	3930.77	.	AC=1;AF=0.500;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	0/1:164,176:0.52:340
chr3	194080916	rs13070515	G	A	4305.77	.	AC=1;AF=0.500;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	0/1:179,192:0.52:371
chr3	194080983	rs13060627	C	T	4034.77	.	AC=1;AF=0.500;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	0/1:152,182:0.54:334
chr3	194081089	rs11713861	C	T	3500.77	.	AC=1;AF=0.500;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	0/1:187,161:0.46:348
chr3	194081179	rs11715737	G	A	4342.77	.	AC=1;AF=0.500;AN=2;DB;DP=496;set=Intersection	GT:AD:AF:DP	0/1:276,215:0.44:491
chr3	194081392	rs923936	G	A	5391.77	.	AC=1;AF=0.500;AN=2;DB;DP=590;set=Intersection	GT:AD:AF:DP	0/1:325,263:0.45:588
chr3	194081635	rs923935	T	C	4187.77	.	AC=1;AF=0.500;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	0/1:186,196:0.51:382
chr3	194118874	rs1223989	T	C	3496.77	.	AC=1;AF=0.500;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	0/1:187,162:0.46:349
chr3	194219566	rs2185478	G	A	1215.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:55,48:0.47:103
chr3	194309210	rs3732473	G	A	778.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:33,37:0.53:70
chr3	194313832	rs1773184	T	C	1169.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:79,61:0.44:140
chr3	194324939	rs6768028	A	G	606.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:40,32:0.44:72
chr3	194324982	rs745171	C	A	900.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:61,46:0.43:107
chr3	194325010	rs745168	G	A	1151.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:75,58:0.44:133
chr3	194325325	rs708632	C	T	1027.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr3	194337708	rs10933663	T	G	472.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:25,22:0.47:47
chr3	194337901	rs922282	T	C	1698.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr3	194338423	rs12695036	C	T	1941.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:108,98:0.48:206
chr3	194344453	rs371160489	C	T	3365.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.421;ClippingRankSum=0.000;DB;DP=395;ExcessHet=3.0103;FS=0.763;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.59;ReadPosRankSum=-1.185;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:210,182:0.46:392
chr3	194346544	rs1773191	T	A	12742.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.35;SOR=1.288;set=HC	GT:AD:AF:DP	1/1:0,281:1.00:281
chr3	194346553	rs1773190	T	C	13142.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.09;SOR=1.232;set=HC	GT:AD:AF:DP	1/1:0,305:1.00:305
chr3	194346803	rs1773189	A	G	1840.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr3	194346822	rs1572979	G	A	1328.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr3	194349027	rs1318216	A	G	1563.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr3	194349178	rs1563970	C	T	8899.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:2,329:0.99:331
chr3	194353772	rs11273892	C	CCCGCCCGACAG	894.73	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:4,33:0.89:37
chr3	194362721	rs1060827	G	A	396.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr3	194369352	rs58416334	T	G	1341.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:54,55:0.50:109
chr3	194373832	rs1675953	TG	CA	11495.77	.	AC=1;AF=0.500;AN=2;DB;DP=601;JOINED;set=Intersection	GT:AD:AF:DP	0/1:291,298:0.51:589
chr3	194379567	rs1675948	A	G	1546.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:59,65:0.52:124
chr3	194379596	rs1705971	C	A	2050.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:95,97:0.51:192
chr3	194379646	rs11438897	T	TC	4792.73	.	AC=1;AF=0.500;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	0/1:178,175:0.50:353
chr3	194379905	rs11357453	TA	T	366.73	.	AC=1;AF=0.500;AN=2;DB;DP=74;MQ=60.15;set=Intersection	GT:AD:AF:DP	0/1:37,25:0.40:62
chr3	194381530	rs1705969	A	G	2108.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr3	194381680	rs1675947	G	A	563.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:37,27:0.42:64
chr3	194381716	rs1705968	G	C	470.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:23,21:0.48:44
chr3	194381742	rs1705967	C	T	285.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:14,13:0.48:27
chr3	194386136	rs1705966	C	T	529.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:34,24:0.41:58
chr3	194386771	rs73890198	C	A	682.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:24,26:0.52:50
chr3	194386881	rs1675944	A	G	8057.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr3	194387186	rs35670721	C	T	6062.77	.	AC=1;AF=0.500;AN=2;DB;DP=622;set=Intersection	GT:AD:AF:DP	0/1:324,292:0.47:616
chr3	194387253	rs34423045	A	G	4434.77	.	AC=1;AF=0.500;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	0/1:222,215:0.49:437
chr3	194390617	rs1773230	G	C	1214.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:78,55:0.41:133
chr3	194390713	rs1675926	C	A	14561.77	.	AC=2;AF=1.00;AN=2;DB;DP=551;set=Intersection	GT:AD:AF:DP	1/1:0,546:1.00:546
chr3	194390869	rs36028600	G	GA	2078.73	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:99,105:0.51:204
chr3	194392683	rs1773231	A	C	6751.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr3	194408704	rs4677673	A	G	11162.77	.	AC=2;AF=1.00;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	1/1:0,422:1.00:422
chr3	194408821	rs79296405	G	C	1317.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:45,61:0.58:106
chr3	194790434	rs3796159	C	G	2743.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:122,115:0.49:237
chr3	194991220	rs7640099	AA	GC	724.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;JOINED;set=Intersection	GT:AD:AF:DP	0/1:15,19:0.56:34
chr3	194999996	rs7610022	T	A	647.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:23,29:0.56:52
chr3	195009994	rs115363377	C	T	2951.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.037;ClippingRankSum=0.000;DB;DP=286;ExcessHet=3.0103;FS=0.923;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.43;ReadPosRankSum=0.071;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:140,143:0.51:283
chr3	195015307	rs71637158	CA	C	113.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.427;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=11.635;MLEAC=1;MLEAF=0.500;MQ=59.70;MQRankSum=0.000;QD=6.32;ReadPosRankSum=0.438;SOR=4.003;set=HC	GT:AD:AF:DP	0/1:8,10:0.56:18
chr3	195015337	rs71180919	ATTATAT	A	118.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.580;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=0.000;QD=2.83;ReadPosRankSum=2.437;SOR=0.876;set=HC	GT:AD:AF:DP	0/1:26,16:0.38:42
chr3	195028183	rs13059843	G	A	774.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:18,27:0.60:45
chr3	195029738	rs10636354	G	GAAAGT	390.73	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:11,11:0.50:22
chr3	195076877	rs6437374	C	G	6025.77	.	AC=1;AF=0.500;AN=2;DB;DP=670;set=Intersection	GT:AD:AF:DP	0/1:370,294:0.44:664
chr3	195133475	rs10645683	T	TAAC	2754.73	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:77,66:0.46:143
chr3	195245771	rs17847363	C	T	2133.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:121,105:0.46:226
chr3	195245805	rs17847362	G	A	2870.77	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:181,144:0.44:325
chr3	195295661	rs7659	C	T	448.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:23,19:0.45:42
chr3	195295702	.	T	TGGCG	1411	.	AC=1;AF=0.500;AN=2;BRF=0.41;FR=0.5000;HP=10;HapScore=2;MGOF=15;MMLQ=24;MQ=59.82;NF=28;NR=5;PP=1411;QD=43.1212121212;SC=TTTGTCTTTATGGGGGGGGGG;SbPval=0.38;Source=Platypus;TC=66;TCF=58;TCR=8;TR=33;WE=195295716;WS=195295692;set=Platypus	GT:AD:AF:DP	1/0:33,33:0.50:66
chr3	195295704	.	G	GC	1349.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.234;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=2.363;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.28;ReadPosRankSum=-0.520;SOR=0.233;set=HC	GT:AD:AF:DP	0/1:39,31:0.44:70
chr3	195295708	rs142189206	G	GGGT	1416.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.188;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=3.388;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.28;ReadPosRankSum=-0.056;SOR=0.229;set=HC	GT:AD:AF:DP	0/1:48,39:0.45:87
chr3	195306055	rs4677691	A	G	3770.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr3	195306219	rs5953	G	A	4814.77	.	AC=1;AF=0.500;AN=2;DB;DP=492;set=Intersection	GT:AD:AF:DP	0/1:249,239:0.49:488
chr3	195345953	rs145174488	C	T	2011.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.609;ClippingRankSum=0.000;DB;DP=1149;ExcessHet=3.0103;FS=10.211;MLEAC=1;MLEAF=0.500;MQ=51.79;MQRankSum=-12.707;QD=1.79;ReadPosRankSum=7.677;SOR=0.570;set=HC	GT:AD:AF:DP	0/1:908,218:0.19:1126
chr3	195346331	rs142792605	C	G	642.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.138;ClippingRankSum=0.000;DB;DP=225;ExcessHet=3.0103;FS=32.111;MLEAC=1;MLEAF=0.500;MQ=46.03;MQRankSum=1.298;QD=2.87;ReadPosRankSum=3.414;SOR=1.939;set=HC	GT:AD:AF:DP	0/1:194,30:0.13:224
chr3	195346352	rs201553387	C	T	731.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.413;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=37.024;MLEAC=1;MLEAF=0.500;MQ=45.43;MQRankSum=1.638;QD=3.75;ReadPosRankSum=2.647;SOR=1.924;set=HC	GT:AD:AF:DP	0/1:165,30:0.15:195
chr3	195395272	rs62287988	C	T	363.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.735;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=3.426;MLEAC=1;MLEAF=0.500;MQ=56.00;MQRankSum=-3.536;QD=3.01;ReadPosRankSum=-0.713;SOR=1.152;set=HC	GT:AD:AF:DP	0/1:96,25:0.21:121
chr3	195395533	rs9847770	C	T	4074.77	.	AC=1;AF=0.500;AN=2;DB;DP=587;set=Intersection	GT:AD:AF:DP	0/1:368,216:0.37:584
chr3	195395549	rs58717446	C	CAT	8652.73	.	AC=1;AF=0.500;AN=2;DB;DP=493;set=Intersection	GT:AD:AF:DP	0/1:253,229:0.48:482
chr3	195398271	.	A	G	646	.	AC=1;AF=0.500;AN=2;BRF=0.41;FR=0.5000;HP=2;HapScore=1;MGOF=5;MMLQ=24;MQ=40.6;NF=7;NR=37;PP=646;QD=15.4720730124;SC=GTGTGCAGGCACATGTGCACA;SbPval=0.15;Source=Platypus;TC=154;TCF=15;TCR=139;TR=44;WE=195398279;WS=195398261;set=Platypus	GT:AD:AF:DP	0/1:110,44:0.29:154
chr3	195399505	rs2280577	C	T	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.265;ClippingRankSum=0.000;DB;DP=278;ExcessHet=3.0103;FS=52.696;MLEAC=1;MLEAF=0.500;MQ=50.58;MQRankSum=-5.862;QD=0.13;ReadPosRankSum=0.423;SOR=5.797;set=HC	GT:AD:AF:DP	0/1:252,26:0.09:278
chr3	195399599	rs2461859	T	C	1391.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.893;ClippingRankSum=0.000;DB;DP=483;ExcessHet=3.0103;FS=4.008;MLEAC=1;MLEAF=0.500;MQ=56.91;MQRankSum=-7.623;QD=2.88;ReadPosRankSum=3.854;SOR=0.435;set=HC	GT:AD:AF:DP	0/1:373,110:0.23:483
chr3	195399620	rs9840981	C	G	1725.77	.	AC=1;AF=0.500;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	0/1:300,111:0.27:411
chr3	195399678	rs9874761	G	T	1316.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:120,64:0.35:184
chr3	195400918	rs55992531	C	CTT	490.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.604;ClippingRankSum=0.000;DB;DP=273;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.99;MQRankSum=-0.137;QD=2.25;ReadPosRankSum=3.850;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:174,44:0.20:218
chr3	195412876	rs11185503	T	C	572.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:43,29:0.40:72
chr3	195426490	rs3107775	A	G	5133.77	.	AC=1;AF=0.500;AN=2;DB;DP=685;set=Intersection	GT:AD:AF:DP	0/1:417,263:0.39:680
chr3	195447886	rs7627924	G	C	837.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:35,40:0.53:75
chr3	195451880	rs142096782	AG	GA	11364.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.412;ClippingRankSum=0.000;DB;DP=1093;ExcessHet=3.0103;FS=5.006;JOINED;MLEAC=1;MLEAF=0.500;MQ=47.99;MQRankSum=-15.520;QD=10.40;ReadPosRankSum=1.637;SOR=0.426;set=HC	GT:AD:AF:DP	0/1:510,583:0.53:1093
chr3	195452005	rs145612981	C	T	1365.77	.	AC=1;AF=0.500;AN=2;DB;DP=646;set=Intersection	GT:AD:AF:DP	0/1:526,112:0.18:638
chr3	195452668	rs201581458	C	G	2535.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.162;ClippingRankSum=0.000;DB;DP=272;ExcessHet=3.0103;FS=4.816;MLEAC=1;MLEAF=0.500;MQ=44.79;MQRankSum=-2.962;QD=9.36;ReadPosRankSum=1.688;SOR=1.027;set=HC	GT:AD:AF:DP	0/1:195,76:0.28:271
chr3	195452689	rs141077164	C	T	3067.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.357;ClippingRankSum=0.000;DB;DP=255;ExcessHet=3.0103;FS=4.858;MLEAC=1;MLEAF=0.500;MQ=44.01;MQRankSum=-2.556;QD=12.03;ReadPosRankSum=0.105;SOR=1.043;set=HC	GT:AD:AF:DP	0/1:168,87:0.34:255
chr3	195452770	rs2550231	G	A	4534.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.018;ClippingRankSum=0.000;DB;DP=429;ExcessHet=3.0103;FS=2.168;MLEAC=1;MLEAF=0.500;MQ=52.90;MQRankSum=-1.455;QD=10.60;ReadPosRankSum=0.368;SOR=0.936;set=HC	GT:AD:AF:DP	0/1:298,130:0.30:428
chr3	195452799	rs2550232	C	T	4605.77	.	AC=1;AF=0.500;AN=2;DB;DP=509;set=Intersection	GT:AD:AF:DP	0/1:359,149:0.29:508
chr3	195452951	rs2688542	G	C	24011.77	.	AC=1;AF=0.500;AN=2;DB;DP=1655;set=Intersection	GT:AD:AF:DP	0/1:597,1047:0.64:1644
chr3	195452987	rs9866681	G	A	18581.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.436;ClippingRankSum=0.000;DB;DP=2041;ExcessHet=3.0103;FS=0.582;MLEAC=1;MLEAF=0.500;MQ=59.21;MQRankSum=-20.275;QD=9.13;ReadPosRankSum=0.599;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:1475,561:0.28:2036
chr3	195452991	rs3828411	C	T	18512.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.848;ClippingRankSum=0.000;DB;DP=2027;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.20;MQRankSum=-19.816;QD=9.16;ReadPosRankSum=1.469;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:1467,555:0.27:2022
chr3	195453014	rs3828410	G	A	9125.77	.	AC=1;AF=0.500;AN=2;DB;DP=1982;set=Intersection	GT:AD:AF:DP	0/1:1427,550:0.28:1977
chr3	195453064	rs2550233	T	G	21600.77	.	AC=1;AF=0.500;AN=2;DB;DP=1424;set=Intersection	GT:AD:AF:DP	0/1:485,932:0.66:1417
chr3	195453243	rs3828408	C	T	7140.77	.	AC=1;AF=0.500;AN=2;DB;DP=1162;set=Intersection	GT:AD:AF:DP	0/1:762,392:0.34:1154
chr3	195453257	rs3828406	G	A	6741.77	.	AC=1;AF=0.500;AN=2;DB;DP=1176;set=Intersection	GT:AD:AF:DP	0/1:782,381:0.33:1163
chr3	195453406	rs3210209	G	C	4921.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.774;ClippingRankSum=0.000;DB;DP=1001;ExcessHet=3.0103;FS=0.594;MLEAC=1;MLEAF=0.500;MQ=58.91;MQRankSum=-14.635;QD=4.94;ReadPosRankSum=0.251;SOR=0.759;set=HC	GT:AD:AF:DP	0/1:718,278:0.28:996
chr3	195453412	rs1063306	C	T	8974.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.081;ClippingRankSum=0.000;DB;DP=940;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.84;MQRankSum=-15.158;QD=9.59;ReadPosRankSum=-0.566;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:675,261:0.28:936
chr3	195453472	rs4992495	G	A	1494.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.766;ClippingRankSum=0.000;DB;DP=354;ExcessHet=3.0103;FS=3.944;MLEAC=1;MLEAF=0.500;MQ=56.73;MQRankSum=-11.863;QD=4.27;ReadPosRankSum=-1.864;SOR=0.958;set=HC	GT:AD:AF:DP	0/1:267,83:0.24:350
chr3	195456561	rs3762739	C	G	2155.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:214,115:0.35:329
chr3	195460236	rs712011	G	A	1401.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:40,57:0.59:97
chr3	195476085	rs2688497	A	G	1115.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:27,47:0.64:74
chr3	195477713	rs2291654	G	A	1525.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.625;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.95;MQRankSum=-0.645;QD=19.56;ReadPosRankSum=2.375;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:38,40:0.51:78
chr3	195477713	.	GCC	ACA	1416	.	AC=1;AF=0.500;AN=2;BRF=0.26;FR=0.5000;HP=9;HapScore=2;MGOF=5;MMLQ=28;MQ=54.74;NF=30;NR=7;PP=1416;QD=39.7153479692;SC=CTGTTTGCCCGCCCCCCGCAG;SbPval=0.42;Source=Platypus;TC=72;TCF=60;TCR=12;TR=37;WE=195477723;WS=195477703;set=Platypus	GT:AD:AF:DP	1/0:35,37:0.51:72
chr3	195477715	rs2291653	C	A	1525.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.966;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.08;MQRankSum=-0.789;QD=19.07;ReadPosRankSum=2.535;SOR=0.852;set=HC	GT:AD:AF:DP	0/1:40,40:0.50:80
chr3	195477791	rs2291652	G	A	2404.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:129,121:0.48:250
chr3	195478012	rs2291651	G	C	1862.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.835;ClippingRankSum=0.000;DB;DP=233;ExcessHet=3.0103;FS=3.196;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.04;ReadPosRankSum=-0.915;SOR=0.378;set=HC	GT:AD:AF:DP	0/1:92,114:0.55:206
chr3	195479256	rs2258447	T	C	6835.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr3	195484244	rs2550270	G	A	1820.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:113,89:0.44:202
chr3	195487737	rs2246771	A	G	1206.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:32,57:0.64:89
chr3	195489009	rs2246901	C	A	1077.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:86,56:0.39:142
chr3	195489067	rs2246980	C	G	1669.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:141,91:0.39:232
chr3	195489669	rs2550263	C	T	1786.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:119,87:0.42:206
chr3	195490284	rs2550261	T	C	793.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:23,30:0.57:53
chr3	195490838	rs377595393	ATCCAGAT	AAGAT,A	838.73	.	AC=1,0;AF=0.500,0.00;ALERT;AN=2;DB;DP=38;set=Intersection	GT:AF:DP	0/1:0.58:38
chr3	195490842	rs34858176	AGATG	A	835.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.509;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.43;ReadPosRankSum=0.534;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:17,22:0.56:39
chr3	195490846	.	G	A	1210	.	AC=1;AF=0.500;AN=2;BRF=0.25;FR=0.5000;HP=2;HapScore=4;MGOF=1;MMLQ=24;MQ=60.0;NF=14;NR=3;PP=1210;QD=73.2218360322;SC=TTATCCAGATGCCACCTCCCG;SbPval=0.42;Source=Platypus;TC=36;TCF=31;TCR=5;TR=17;WE=195490854;WS=195490828;set=Platypus	GT:AD:AF:DP	1/0:19,17:0.47:36
chr3	195492027	rs11926236	T	C	9925.77	.	AC=2;AF=1.00;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	1/1:0,381:1.00:381
chr3	195495916	rs2550240	G	C	8962.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:3,331:0.99:334
chr3	195496129	rs2688492	C	T	1396.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr3	195497174	rs2259102	C	G	7727.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr3	195497743	rs2260685	T	C	3356.77	.	AC=1;AF=0.500;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	0/1:175,158:0.47:333
chr3	195497809	rs2259153	T	C	4629.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr3	195501149	rs2259292	C	T	1707.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:58,80:0.58:138
chr3	195501258	rs2259331	T	C	1301.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr3	195505247	rs76650792	G	T	722.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:32,34:0.52:66
chr3	195505417	rs2259419	G	A	712.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:42,36:0.46:78
chr3	195505664	rs2688513	G	A	5223.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr3	195505788	rs2550253	G	C	1218.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:93,46:0.33:139
chr3	195505835	rs58500707	C	T	638.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.405;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=3.288;MLEAC=1;MLEAF=0.500;MQ=55.76;MQRankSum=-0.865;QD=5.91;ReadPosRankSum=-0.286;SOR=1.133;set=HC	GT:AD:AF:DP	0/1:86,22:0.20:108
chr3	195505838	rs59101491	G	C	640.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.757;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=3.226;MLEAC=1;MLEAF=0.500;MQ=55.76;MQRankSum=-0.865;QD=5.93;ReadPosRankSum=-0.806;SOR=1.071;set=HC	GT:AD:AF:DP	0/1:86,22:0.20:108
chr3	195511993	.	A	G	1343	.	AC=1;AF=0.500;AN=2;BRF=0.54;FR=0.5000;HP=1;HapScore=1;MGOF=46;MMLQ=27;MQ=50.09;NF=39;NR=31;PP=1343;QD=19.6824458935;SC=ACCTGTGGATACTGAGGAAGT;SbPval=0.66;Source=Platypus;TC=103;TCF=55;TCR=48;TR=70;WE=195512012;WS=195511983;set=Platypus	GT:AD:AF:DP	0/1:33,70:0.68:103
chr3	195512004	.	T	G	2540	.	AC=2;AF=1.00;AN=2;BRF=0.54;FR=1.0000;HP=2;HapScore=1;MGOF=46;MMLQ=22;MQ=53.24;NF=61;NR=52;PP=2540;QD=20;SC=CTGAGGAAGTTTCGGTGACAG;SbPval=0.54;Source=Platypus;TC=114;TCF=62;TCR=52;TR=113;WE=195512012;WS=195511983;set=Platypus	GT:AD:AF:DP	1/1:1,113:0.99:114
chr3	195512042	.	T	C	2887	.	AC=2;AF=1.00;AN=2;BRF=0.48;FR=1.0000;HP=1;HapScore=1;MGOF=56;MMLQ=26;MQ=55.9;NF=67;NR=66;PP=2887;QD=20;SC=CCTGTGGATGTTGAGGAAGGG;SbPval=0.5;Source=Platypus;TC=138;TCF=68;TCR=70;TR=133;WE=195512050;WS=195512032;set=Platypus	GT:AD:AF:DP	1/1:5,133:0.96:138
chr3	195512107	.	T	A	1765	.	AC=2;AF=1.00;AN=2;BRF=0.47;FR=0.5000;HP=1;HapScore=1;MGOF=55;MMLQ=21;MQ=59.18;NF=68;NR=69;PP=1765;QD=13.13701615;SC=AGCATCGGTGTCATGAAGAGC;SbPval=0.53;Source=Platypus;TC=139;TCF=69;TCR=70;TR=137;WE=195512115;WS=195512093;set=Platypus	GT:AD:AF:DP	1/1:2,137:0.99:139
chr3	195512186	rs202060675	T	C	4343.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr3	195512212	rs75588776	G	T	428.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.030;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=3.528;MLEAC=1;MLEAF=0.500;MQ=56.70;MQRankSum=-1.260;QD=2.94;ReadPosRankSum=-1.114;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:110,36:0.25:146
chr3	195515414	rs71180964	T	TGGTGACAGGAAGAGGGGTGGCGTGACCTGTGGATTCTGAGGAAGTGTC	1876.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.698;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=2.251;MLEAC=1;MLEAF=0.500;MQ=56.79;MQRankSum=-1.292;QD=69.51;ReadPosRankSum=2.684;SOR=0.591;set=HC	GT:AD:AF:DP	0/1:3,24:0.89:27
chr3	195515594	rs13095016	C	G	6316.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr3	195515617	rs2641776	G	C	7113.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr3	195516630	rs3103954	G	T	7640.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr3	195516878	rs2177336	T	C	9604.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:0,337:1.00:337
chr3	195517097	rs201058947	G	A	4012.77	.	AC=1;AF=0.500;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	0/1:214,186:0.47:400
chr3	195517258	rs1106502	G	A	9608.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	1/1:0,350:1.00:350
chr3	195517321	rs1104760	G	A	8734.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr3	195517553	rs882605	A	C	10656.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	1/1:0,381:1.00:381
chr3	195518112	rs142781032	T	TGTCTCCTGCGTAACA	9739.73	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr3	195518330	rs3107764	C	G	4121.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr3	195538501	rs143120396	TTC	T	1697.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.614;ClippingRankSum=0.000;DB;DP=474;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=2.872;QD=3.76;ReadPosRankSum=0.594;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:349,103:0.23:452
chr3	195594961	rs62283329	C	T	2686.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:126,123:0.49:249
chr3	195595632	rs13087251	A	G	1905.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:86,88:0.51:174
chr3	195596501	rs71637188	T	TAG	1102.73	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:47,49:0.51:96
chr3	195596636	rs13084875	C	T	594.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr3	195596907	rs2278034	T	C	3868.77	.	AC=1;AF=0.500;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	0/1:162,178:0.52:340
chr3	195599085	rs2241413	T	C	5114.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr3	195603634	rs11185487	G	A	1046.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr3	195603652	rs9815549	T	G	342.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:12,13:0.52:25
chr3	195612034	rs3747672	T	C	945.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:32,40:0.56:72
chr3	195615376	rs3747669	A	G	1855.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:106,94:0.47:200
chr3	195619381	rs140843768	C	T	2563.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:127,124:0.49:251
chr3	195686832	rs201549703	G	A	163.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.897;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=1.611;MLEAC=1;MLEAF=0.500;MQ=45.61;MQRankSum=-1.982;QD=4.31;ReadPosRankSum=-0.608;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:27,11:0.29:38
chr3	195686868	rs147286278	G	A	222.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.993;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=2.512;MLEAC=1;MLEAF=0.500;MQ=46.47;MQRankSum=-3.275;QD=3.59;ReadPosRankSum=-0.578;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:46,16:0.26:62
chr3	195690397	rs148308206	A	G	621.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:66,27:0.29:93
chr3	195701278	rs200131790	C	T	2596.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.572;ClippingRankSum=0.000;DB;DP=650;ExcessHet=3.0103;FS=2.538;MLEAC=1;MLEAF=0.500;MQ=51.60;MQRankSum=-14.866;QD=4.00;ReadPosRankSum=1.573;SOR=0.921;set=HC	GT:AD:AF:DP	0/1:546,104:0.16:650
chr3	195701285	rs201085786	G	T	2787.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.830;ClippingRankSum=0.000;DB;DP=700;ExcessHet=3.0103;FS=0.721;MLEAC=1;MLEAF=0.500;MQ=52.09;MQRankSum=-13.752;QD=3.98;ReadPosRankSum=1.440;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:583,117:0.17:700
chr3	195701304	rs200047587	C	T	4051.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.828;ClippingRankSum=0.000;DB;DP=779;ExcessHet=3.0103;FS=2.334;MLEAC=1;MLEAF=0.500;MQ=52.75;MQRankSum=-11.835;QD=5.20;ReadPosRankSum=1.269;SOR=0.949;set=HC	GT:AD:AF:DP	0/1:636,143:0.18:779
chr3	195701310	.	C	CAA	4127.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.663;ClippingRankSum=0.000;DP=786;ExcessHet=3.0103;FS=2.334;MLEAC=1;MLEAF=0.500;MQ=52.79;MQRankSum=-11.662;QD=5.25;ReadPosRankSum=1.843;SOR=0.948;set=HC	GT:AD:AF:DP	0/1:641,145:0.18:786
chr3	195701331	rs78212497	G	A	1554.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.344;ClippingRankSum=0.000;DB;DP=804;ExcessHet=3.0103;FS=2.272;MLEAC=1;MLEAF=0.500;MQ=52.82;MQRankSum=-9.885;QD=1.93;ReadPosRankSum=2.353;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:647,157:0.20:804
chr3	195701388	rs57251344	GC	AA	5788.77	.	AC=1;AF=0.500;AN=2;DB;DP=469;JOINED;set=Intersection	GT:AD:AF:DP	0/1:306,162:0.35:468
chr3	195701472	.	A	G	684.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.279;ClippingRankSum=0.000;DP=100;ExcessHet=3.0103;FS=3.318;MLEAC=1;MLEAF=0.500;MQ=46.87;MQRankSum=-2.674;QD=6.92;ReadPosRankSum=0.643;SOR=0.241;set=HC	GT:AD:AF:DP	0/1:76,23:0.23:99
chr3	195701483	rs377526928	TCCA	T	711.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.596;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=3.484;MLEAC=1;MLEAF=0.500;MQ=45.66;MQRankSum=-1.753;QD=8.37;ReadPosRankSum=-1.591;SOR=0.216;set=HC	GT:AD:AF:DP	0/1:62,23:0.27:85
chr3	195702731	rs200439531	G	C	633.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.962;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=37.088;MLEAC=1;MLEAF=0.500;MQ=41.42;MQRankSum=0.653;QD=5.07;ReadPosRankSum=-0.717;SOR=3.736;set=HC	GT:AD:AF:DP	0/1:94,31:0.25:125
chr3	195702808	rs201230648	T	C	1774.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.119;ClippingRankSum=0.000;DB;DP=277;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=50.59;MQRankSum=0.046;QD=6.45;ReadPosRankSum=0.388;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:174,101:0.37:275
chr3	195710989	rs2620604	G	A	631.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.278;ClippingRankSum=0.000;DB;DP=290;ExcessHet=3.0103;FS=2.314;MLEAC=1;MLEAF=0.500;MQ=58.52;MQRankSum=-16.412;QD=2.19;ReadPosRankSum=0.405;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:255,34:0.12:289
chr3	195710993	rs4927692	A	G	610.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.873;ClippingRankSum=0.000;DB;DP=295;ExcessHet=3.0103;FS=0.660;MLEAC=1;MLEAF=0.500;MQ=58.63;MQRankSum=-15.450;QD=2.08;ReadPosRankSum=0.256;SOR=0.591;set=HC	GT:AD:AF:DP	0/1:258,36:0.12:294
chr3	195711016	rs79282413	G	A	2434.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:171,126:0.42:297
chr3	195754164	rs6782834	A	G	864.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:44,36:0.45:80
chr3	195778972	rs1805051	C	T	2526.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:168,127:0.43:295
chr3	195779155	rs41298097	C	T	839.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.525;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=1.065;MLEAC=1;MLEAF=0.500;MQ=59.78;MQRankSum=-0.680;QD=14.23;ReadPosRankSum=-0.064;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:20,39:0.66:59
chr3	195782176	rs419068	CA	TG	4788.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.215;ClippingRankSum=0.000;DB;DP=309;ExcessHet=3.0103;FS=3.168;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.65;ReadPosRankSum=0.042;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:178,128:0.42:306
chr3	195782184	rs419059	C	T	4553.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.625;ClippingRankSum=0.000;DB;DP=292;ExcessHet=3.0103;FS=4.771;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.70;ReadPosRankSum=-0.519;SOR=0.967;set=HC	GT:AD:AF:DP	0/1:169,121:0.42:290
chr3	195784997	rs3933	G	A	1372.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:54,59:0.52:113
chr3	195789376	rs526860	C	T	371.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:31,20:0.39:51
chr3	195789414	rs2239641	T	C	1245.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:31,56:0.64:87
chr3	195789428	rs507131	C	A	2931.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr3	195789708	rs2239640	G	T	4184.77	.	AC=1;AF=0.500;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	0/1:241,204:0.46:445
chr3	195792272	rs200523802	C	CA	74.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.111;ClippingRankSum=-0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.37;MQRankSum=-0.000;QD=7.47;ReadPosRankSum=-0.930;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:4,6:0.60:10
chr3	195792288	rs55639089	CGGG	C	211.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.531;ClippingRankSum=-0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.33;MQRankSum=-0.000;QD=19.25;ReadPosRankSum=-0.366;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:3,8:0.73:11
chr3	195798258	rs480760	T	C	20748.77	.	AC=2;AF=1.00;AN=2;DB;DP=776;set=Intersection	GT:AD:AF:DP	1/1:0,763:1.00:763
chr3	195800811	rs3817672	C	T	1197.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:46,48:0.51:94
chr3	195801938	rs5021790	T	A	454.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:42,26:0.38:68
chr3	195804021	rs41300435	G	A	1513.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:75,71:0.49:146
chr3	195926234	rs939892	T	C	400.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:23,17:0.42:40
chr3	195935207	rs12497404	C	G	760.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:20,37:0.65:57
chr3	195936382	rs11719281	G	A	2384.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:96,106:0.52:202
chr3	195936446	rs4916502	C	T	783.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:45,36:0.44:81
chr3	195937678	rs12718059	G	A	595.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:23,24:0.51:47
chr3	195943600	.	C	T	6524.77	.	AC=1;AF=0.500;AN=2;DP=676;set=Intersection	GT:AD:AF:DP	0/1:356,319:0.47:675
chr3	195955762	rs939885	G	A	2986.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:172,148:0.46:320
chr3	195956726	rs144375332	AAG	A	155.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.081;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.90;ReadPosRankSum=0.007;SOR=0.798;set=HC	GT:AD:AF:DP	0/1:69,13:0.16:82
chr3	195974648	rs76599149	T	G	563.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:20,25:0.56:45
chr3	196022750	rs2293160	T	C	978.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:53,41:0.44:94
chr3	196022961	rs75016149	G	T	6622.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.565;ClippingRankSum=0.000;DB;DP=714;ExcessHet=3.0103;FS=1.092;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.49;ReadPosRankSum=-1.113;SOR=0.794;set=HC	GT:AD:AF:DP	0/1:366,332:0.48:698
chr3	196042137	rs34104361	CT	C,CTT	417.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.112;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=1.773;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=7.88;ReadPosRankSum=-0.109;SOR=1.445;set=HC	GT:AD:AF:DP	1/2:8,24,21:0.45,0.40:53
chr3	196044894	rs2270769	G	C	4336.77	.	AC=1;AF=0.500;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	0/1:200,208:0.51:408
chr3	196051087	rs147354585	GTC	G	199.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.420;ClippingRankSum=0.000;DB;DP=642;ExcessHet=3.0103;FS=0.941;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=6.166;QD=0.34;ReadPosRankSum=-0.776;SOR=0.570;set=HC	GT:AD:AF:DP	0/1:522,61:0.10:583
chr3	196054439	rs6785339	T	G	1403.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:84,65:0.44:149
chr3	196054488	rs6782336	A	G	389.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:29,17:0.37:46
chr3	196096451	rs9860931	C	T	566.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:23,27:0.54:50
chr3	196118621	rs6583305	A	T	2048.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:119,121:0.50:240
chr3	196118868	rs6779332	A	C	422.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:34,22:0.39:56
chr3	196134294	.	TA	T	321.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.712;ClippingRankSum=0.000;DP=189;ExcessHet=3.0103;FS=0.871;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.40;ReadPosRankSum=-0.403;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:84,50:0.37:134
chr3	196158468	rs10532490	TCC	T	3544.73	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:108,95:0.47:203
chr3	196202036	rs115253545	T	C	1941.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:137,96:0.41:233
chr3	196294104	rs9842616	C	G	12036.77	.	AC=2;AF=1.00;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	1/1:0,442:1.00:442
chr3	196386964	rs1798631	C	G	11114.77	.	AC=2;AF=1.00;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	1/1:1,411:1.00:412
chr3	196443803	rs1906044	T	C	983.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:47,49:0.51:96
chr3	196443947	rs35314545	G	A	201.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:5,9:0.64:14
chr3	196455682	rs71323744	G	A	1719.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:101,83:0.45:184
chr3	196460680	rs34830136	C	T	2130.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:177,113:0.39:290
chr3	196533671	rs35013100	G	A	2276.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:95,103:0.52:198
chr3	196541580	rs11185455	G	A	5268.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr3	196547446	rs2084382	G	C	5778.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr3	196547538	rs2166799	G	A	1399.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr3	196627088	rs9825635	A	G	432.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:26,18:0.41:44
chr3	196627335	rs6764463	T	C	542.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:45,31:0.41:76
chr3	196627361	rs6772870	G	A	451.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:42,25:0.37:67
chr3	196650187	rs62411765	C	T	905.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:58,42:0.42:100
chr3	196654507	rs10663759	T	TA	150.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.904;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=1.775;MLEAC=1;MLEAF=0.500;MQ=60.49;MQRankSum=1.260;QD=3.68;ReadPosRankSum=-0.731;SOR=1.352;set=HC	GT:AD:AF:DP	0/1:23,18:0.44:41
chr3	196656772	rs1602	G	A	1138.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr3	196657670	rs63736860	CT	C	4423.73	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:6,210:0.97:216
chr3	196666059	rs553783	A	G	7332.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr3	196669488	rs3214858	C	CA	6455.73	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr3	196669912	rs335824	C	T	1464.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:94,70:0.43:164
chr3	196674518	rs1147238	A	G	2765.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:138,126:0.48:264
chr3	196674749	rs4916589	C	T	9519.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:1,323:1.00:324
chr3	196674879	rs12636891	A	G	19005.77	.	AC=2;AF=1.00;AN=2;DB;DP=693;set=Intersection	GT:AD:AF:DP	1/1:0,687:1.00:687
chr3	196674916	rs1147240	A	C	17477.77	.	AC=2;AF=1.00;AN=2;DB;DP=656;set=Intersection	GT:AD:AF:DP	1/1:0,650:1.00:650
chr3	196674972	rs574365	CT	TC	21273.77	.	AC=2;AF=1.00;AN=2;DB;DP=483;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,478:1.00:478
chr3	196749798	rs2288766	T	G	3802.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr3	196750016	rs2288765	A	G	4751.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr3	196750841	rs2280294	C	A	5626.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr3	196751474	rs2280296	C	T	890.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr3	196754693	.	C	T	2487.77	.	AC=1;AF=0.500;AN=2;DP=287;set=Intersection	GT:AD:AF:DP	0/1:158,124:0.44:282
chr3	196754819	rs2276788	C	G	2510.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:1,94:0.99:95
chr3	196754856	rs12637442	C	A	1519.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:1,53:0.98:54
chr3	196795720	rs6804448	T	C	681.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:42,37:0.47:79
chr3	196795879	rs57032552	A	ACT	872.73	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:26,25:0.49:51
chr3	196846437	rs6776073	C	T	1926.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:98,97:0.50:195
chr3	196869688	rs7628652	A	G	4081.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.00;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:0,157:1.00:157
chr3	196876600	rs73210523	G	A	2876.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:157,140:0.47:297
chr3	196876775	rs149672384	T	TTA	680.73	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:11,19:0.63:30
chr3	196910315	rs36054755	GA	G	373.73	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:19,18:0.49:37
chr3	197023445	rs3852013	C	A	570.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:32,25:0.44:57
chr3	197238728	rs186563205	CC	TT	2785.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;JOINED;set=Intersection	GT:AD:AF:DP	0/1:67,72:0.52:139
chr3	197239266	rs9325394	C	G	2125.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:97,97:0.50:194
chr3	197249693	rs3828369	C	T	2483.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:142,126:0.47:268
chr3	197362030	rs2451791	C	T	2971.77	.	AC=1;AF=0.500;AN=2;DB;DP=624;set=Intersection	GT:AD:AF:DP	0/1:439,185:0.30:624
chr3	197362080	rs9815968	T	A	4410.77	.	AC=1;AF=0.500;AN=2;DB;DP=782;set=Intersection	GT:AD:AF:DP	0/1:526,254:0.33:780
chr3	197362184	rs9867990	C	T	2972.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.737;ClippingRankSum=0.000;DB;DP=304;ExcessHet=3.0103;FS=1.608;MLEAC=1;MLEAF=0.500;MQ=50.97;MQRankSum=-5.803;QD=10.01;ReadPosRankSum=-1.853;SOR=0.828;set=HC	GT:AD:AF:DP	0/1:206,91:0.31:297
chr3	197362187	rs9867993	C	T	2881.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.120;ClippingRankSum=0.000;DB;DP=283;ExcessHet=3.0103;FS=4.836;MLEAC=1;MLEAF=0.500;MQ=50.62;MQRankSum=-6.714;QD=10.40;ReadPosRankSum=-0.738;SOR=1.007;set=HC	GT:AD:AF:DP	0/1:195,82:0.30:277
chr3	197444762	rs186702981	T	C	79.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.008;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.32;ReadPosRankSum=-0.730;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:10,5:0.33:15
chr3	197482760	rs13068986	C	G	4533.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr3	197483279	rs6794391	A	G	2336.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:91,106:0.54:197
chr3	197490285	.	CA	C	251.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.896;ClippingRankSum=0.000;DP=200;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.40;ReadPosRankSum=-0.475;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:131,49:0.27:180
chr3	197495334	rs3205525	G	A	1671.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:78,84:0.52:162
chr3	197495543	.	T	G	283.77	.	AC=1;AF=0.500;AN=2;DP=38;set=Intersection	GT:AD:AF:DP	0/1:23,15:0.39:38
chr3	197496984	rs1708460	A	G	2472.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr3	197500394	rs3830497	T	TTTTG	6002.73	.	AC=1;AF=0.500;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	0/1:160,159:0.50:319
chr3	197544201	.	A	G	237	.	AC=1;AF=0.500;AN=2;BRF=0.41;FR=0.5000;HP=1;HapScore=2;MGOF=9;MMLQ=24;MQ=59.63;NF=0;NR=12;PP=237;QD=22.6476010456;SC=ATTGTCCAACATGTGTGTGTG;SbPval=1.0;Source=Platypus;TC=41;TCF=8;TCR=33;TR=12;WE=197544209;WS=197544191;set=Platypus	GT:AD:AF:DP	0/1:29,12:0.29:41
chr3	197544231	.	GTA	G	64	.	AC=1;AF=0.500;AN=2;BRF=0.33;FR=0.5000;HP=2;HapScore=3;MGOF=8;MMLQ=28;MQ=60.0;NF=0;NR=5;PP=64;QD=14.2;SC=GTGTGTGTGTGTATATATATA;SbPval=1.0;Source=Platypus;TC=20;TCF=1;TCR=19;TR=5;WE=197544242;WS=197544221;set=Platypus	GT:AD:AF:DP	0/1:15,5:0.25:20
chr3	197557574	.	CTGTT	C	4352.73	.	AC=1;AF=0.500;AN=2;DP=220;set=Intersection	GT:AD:AF:DP	0/1:106,113:0.52:219
chr3	197557635	rs501101	C	T	4115.77	.	AC=1;AF=0.500;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	0/1:243,203:0.46:446
chr3	197574936	rs2306439	G	C	2682.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr3	197581147	rs9863587	A	G	6741.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:2,240:0.99:242
chr3	197723075	.	A	G	489.77	.	AC=1;AF=0.500;AN=2;DP=62;set=Intersection	GT:AD:AF:DP	0/1:32,27:0.46:59
chr4	53360	rs75858144	C	G	2459.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.492;ClippingRankSum=0.000;DB;DP=2055;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.21;ReadPosRankSum=-0.038;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:1721,315:0.15:2036
chr4	53428	rs2859214	G	A	27481.77	.	AC=2;AF=1.00;AN=2;DB;DP=931;set=Intersection	GT:AD:AF:DP	1/1:0,925:1.00:925
chr4	53446	rs4970290	T	C	48.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.038;ClippingRankSum=0.000;DB;DP=716;ExcessHet=3.0103;FS=0.964;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.07;ReadPosRankSum=-0.840;SOR=0.812;set=HC	GT:AD:AF:DP	0/1:631,80:0.11:711
chr4	59350	rs6834707	A	G	856.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.362;ClippingRankSum=0.000;DB;DP=2497;ExcessHet=3.0103;FS=0.816;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.757;QD=0.35;ReadPosRankSum=1.527;SOR=0.579;set=HC	GT:AD:AF:DP	0/1:2164,309:0.12:2473
chr4	59469	rs6834940	A	G	1965.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.733;ClippingRankSum=0.000;DB;DP=2139;ExcessHet=3.0103;FS=0.788;MLEAC=1;MLEAF=0.500;MQ=59.75;MQRankSum=-6.162;QD=0.93;ReadPosRankSum=1.720;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:1827,295:0.14:2122
chr4	59566	rs6856925	C	A	1226.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.314;ClippingRankSum=0.000;DB;DP=486;ExcessHet=3.0103;FS=2.548;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.58;ReadPosRankSum=-1.056;SOR=0.306;set=HC	GT:AD:AF:DP	0/1:412,63:0.13:475
chr4	59571	rs6835149	A	T	1160.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.555;ClippingRankSum=0.000;DB;DP=434;ExcessHet=3.0103;FS=1.251;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.73;ReadPosRankSum=-1.164;SOR=0.380;set=HC	GT:AD:AF:DP	0/1:369,56:0.13:425
chr4	60138	.	G	A	82.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.250;ClippingRankSum=0.000;DP=640;ExcessHet=3.0103;FS=0.883;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.13;ReadPosRankSum=0.143;SOR=0.545;set=HC	GT:AD:AF:DP	0/1:559,69:0.11:628
chr4	60303	rs3864127	G	A	3137.77	.	AC=1;AF=0.500;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	0/1:271,163:0.38:434
chr4	60335	rs2780400	A	T	9656.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.793;ClippingRankSum=0.000;DB;DP=402;ExcessHet=3.0103;FS=0.539;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.20;ReadPosRankSum=1.422;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:53,346:0.87:399
chr4	60335	.	AGACATAGGAG	TGACATAGGAA,TGACATAGGAG	2962	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.38;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=18;MMLQ=28;MQ=59.96;NF=27,110;NR=30,135;PP=602,2962;QD=11.4994364011;SC=TTGCTTTTAGAGACATAGGAG;SbPval=0.46;Source=Platypus;TC=275;TCF=124;TCR=151;TR=57,245;WE=60353;WS=60325;set=Platypus	GT:AF:DP	0/1:0.21:275
chr4	60345	rs4248885	G	A	1269.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.178;ClippingRankSum=0.000;DB;DP=374;ExcessHet=3.0103;FS=1.466;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.42;ReadPosRankSum=0.502;SOR=0.585;set=HC	GT:AD:AF:DP	0/1:282,89:0.24:371
chr4	60371	rs61792209	G	A	176.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.161;ClippingRankSum=0.000;DB;DP=308;ExcessHet=3.0103;FS=2.117;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.57;ReadPosRankSum=0.630;SOR=0.528;set=HC	GT:AD:AF:DP	0/1:266,42:0.14:308
chr4	60400	rs3864128	G	A	3583.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:52,150:0.74:202
chr4	60503	.	A	AT	92	.	AC=1;AF=0.500;AN=2;BRF=0.15;FR=0.5000;HP=11;HapScore=3;MGOF=22;MMLQ=27;MQ=59.38;NF=0;NR=9;PP=92;QD=11.2222222222;SC=CTGCTTAGTGATTTTTTTTTT;SbPval=1.0;Source=Platypus;TC=33;TCF=0;TCR=33;TR=9;WE=60511;WS=60493;set=Platypus	GT:AD:AF:DP	0/1:24,9:0.27:33
chr4	67596	rs10428293	G	A	237.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.515;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=5.181;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.50;ReadPosRankSum=0.254;SOR=0.126;set=HC	GT:AD:AF:DP	0/1:53,15:0.22:68
chr4	67783	rs35464588	CT	C	997.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.331;ClippingRankSum=0.000;DB;DP=466;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.383;QD=2.63;ReadPosRankSum=0.056;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:266,113:0.30:379
chr4	67801	rs77175674	C	T	298.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.311;ClippingRankSum=0.000;DB;DP=369;ExcessHet=3.0103;FS=1.777;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.82;ReadPosRankSum=-1.697;SOR=0.558;set=HC	GT:AD:AF:DP	0/1:306,57:0.16:363
chr4	67857	rs6599364	C	A	1295.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:97,60:0.38:157
chr4	85995	rs61336127	C	CA	8190.73	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr4	86016	rs57253237	G	GC	8013.73	.	AC=2;AF=1.00;AN=2;DB;DP=181;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.77;QD=44.52;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,180:1.00:180
chr4	86022	rs74490941	C	A	6856.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.36;QD=47.29;SOR=0.952;set=HC	GT:AD:AF:DP	1/1:0,145:1.00:145
chr4	86022	.	CAG	ATA	2937	.	AC=2;AF=1.00;AN=2;BRF=0.57;FR=1.0000;HP=2;HapScore=1;MGOF=40;MMLQ=28;MQ=48.75;NF=16;NR=19;PP=2937;QD=20;SC=CAAAGCTTTACAGGGTCCACA;SbPval=0.36;Source=Platypus;TC=62;TCF=32;TCR=30;TR=35;WE=86052;WS=86006;set=Platypus	GT:AD:AF:DP	1/1:27,35:0.56:62
chr4	86023	rs78362263	A	T	6946.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.39;QD=47.26;SOR=0.883;set=HC	GT:AD:AF:DP	1/1:0,147:1.00:147
chr4	86024	rs77715101	G	A	6811.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.37;QD=46.66;SOR=0.901;set=HC	GT:AD:AF:DP	1/1:0,146:1.00:146
chr4	86031	rs367720730	CA	C	6982.73	.	AC=2;AF=1.00;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.41;QD=47.18;SOR=0.748;set=HC	GT:AD:AF:DP	1/1:0,148:1.00:148
chr4	86032	.	AAT	A	1846	.	AC=2;AF=1.00;AN=2;BRF=0.57;FR=1.0000;HP=1;HapScore=1;MGOF=40;MMLQ=28;MQ=47.16;NF=9;NR=19;PP=1846;QD=66.8928571429;SC=CAGGGTCCACAATCCACTGAA;SbPval=0.56;Source=Platypus;TC=28;TCF=9;TCR=19;TR=28;WE=86052;WS=86006;set=Platypus	GT:AD:AF:DP	1/1:0,28:1.00:28
chr4	86034	rs57594632	TC	T	6847.73	.	AC=2;AF=1.00;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.41;QD=46.27;SOR=0.720;set=HC	GT:AD:AF:DP	1/1:0,148:1.00:148
chr4	86040	rs17853557	G	T	6721.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.45;QD=46.36;SOR=0.823;set=HC	GT:AD:AF:DP	1/1:0,145:1.00:145
chr4	86042	rs17857099	A	G	6748.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.36;QD=48.21;SOR=0.844;set=HC	GT:AD:AF:DP	1/1:0,140:1.00:140
chr4	86044	rs17857100	G	A	6433.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.45;QD=44.68;SOR=0.840;set=HC	GT:AD:AF:DP	1/1:0,144:1.00:144
chr4	86101	rs58319295	G	GC	10091.73	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr4	86738	rs2353625	A	G	9744.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:0,356:1.00:356
chr4	86798	rs3789149	C	T	9623.77	.	AC=2;AF=1.00;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	1/1:1,352:1.00:353
chr4	87113	rs2006748	T	C	7788.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr4	87277	rs2006764	G	C	10469.77	.	AC=2;AF=1.00;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	1/1:0,378:1.00:378
chr4	87313	rs60154095	G	GA	12898.73	.	AC=2;AF=1.00;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	1/1:0,347:1.00:347
chr4	124375	rs3747693	T	G	3499.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr4	135694	rs12504142	G	A	920.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr4	135738	rs57013142	T	A	1730.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr4	155713	rs7440274	A	G	3118.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr4	264941	rs11731285	A	G	3391.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr4	299261	rs79657896	G	A	1875.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr4	331658	rs3749520	T	C	7738.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.337;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.12;MQRankSum=0.240;QD=42.76;ReadPosRankSum=-1.009;SOR=1.073;set=HC	GT:AD:AF:DP	1/1:4,177:0.98:181
chr4	331666	rs3749521	G	C	8274.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.163;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.03;MQRankSum=0.018;QD=40.76;ReadPosRankSum=-0.692;SOR=0.949;set=HC	GT:AD:AF:DP	1/1:4,199:0.98:203
chr4	331693	rs5855672	G	GC	9396.73	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr4	331740	rs3749523	G	T	7228.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:1,273:1.00:274
chr4	338031	.	A	C	72.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.178;ClippingRankSum=0.000;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.52;MQRankSum=-7.099;QD=1.40;ReadPosRankSum=-2.636;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:46,6:0.12:52
chr4	338036	.	A	T	105.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.328;ClippingRankSum=0.000;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.66;MQRankSum=-7.575;QD=1.79;ReadPosRankSum=-2.169;SOR=0.917;set=HC	GT:AD:AF:DP	0/1:52,7:0.12:59
chr4	338047	.	G	A	114.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.950;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.71;MQRankSum=-8.270;QD=1.64;ReadPosRankSum=-1.099;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:62,8:0.11:70
chr4	338054	.	G	A	213.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.500;ClippingRankSum=0.000;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.61;MQRankSum=-9.019;QD=2.58;ReadPosRankSum=-0.763;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:73,10:0.12:83
chr4	338078	.	A	T	390.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.913;ClippingRankSum=0.000;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.24;MQRankSum=-10.626;QD=3.40;ReadPosRankSum=0.083;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:98,17:0.15:115
chr4	338086	.	T	G	453.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.838;ClippingRankSum=0.000;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.18;MQRankSum=-10.995;QD=3.69;ReadPosRankSum=0.644;SOR=0.589;set=HC	GT:AD:AF:DP	0/1:105,18:0.15:123
chr4	338129	rs75245145	G	A	1282.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.035;ClippingRankSum=0.000;DB;DP=222;ExcessHet=3.0103;FS=3.694;MLEAC=1;MLEAF=0.500;MQ=57.56;MQRankSum=-10.705;QD=5.97;ReadPosRankSum=-3.038;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:161,54:0.25:215
chr4	338156	rs79227679	T	A	1099.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.186;ClippingRankSum=0.000;DB;DP=278;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.49;MQRankSum=-9.807;QD=4.17;ReadPosRankSum=0.258;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:192,72:0.27:264
chr4	338186	rs78725891	G	T	1303.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.358;ClippingRankSum=0.000;DB;DP=310;ExcessHet=3.0103;FS=0.467;MLEAC=1;MLEAF=0.500;MQ=57.98;MQRankSum=-8.241;QD=4.46;ReadPosRankSum=2.153;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:206,86:0.29:292
chr4	338197	.	T	TGA	3142.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.791;ClippingRankSum=0.000;DP=320;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.09;MQRankSum=-7.690;QD=10.55;ReadPosRankSum=2.538;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:210,88:0.30:298
chr4	338200	.	G	C	3148.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.185;ClippingRankSum=0.000;DP=317;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.09;MQRankSum=-7.507;QD=10.57;ReadPosRankSum=2.107;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:207,91:0.31:298
chr4	338201	.	ATC	A	3241.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.299;ClippingRankSum=0.000;DP=320;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.11;MQRankSum=-7.559;QD=10.77;ReadPosRankSum=2.168;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:210,91:0.30:301
chr4	338205	rs80052234	T	C	3262.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.635;ClippingRankSum=0.000;DB;DP=317;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.08;MQRankSum=-7.446;QD=10.95;ReadPosRankSum=1.149;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:203,95:0.32:298
chr4	338246	rs79348421	G	A	2908.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.514;ClippingRankSum=0.000;DB;DP=267;ExcessHet=3.0103;FS=1.644;MLEAC=1;MLEAF=0.500;MQ=58.22;MQRankSum=-5.777;QD=11.68;ReadPosRankSum=-0.373;SOR=0.563;set=HC	GT:AD:AF:DP	0/1:165,84:0.34:249
chr4	338252	rs76962477	G	A	2853.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.620;ClippingRankSum=0.000;DB;DP=250;ExcessHet=3.0103;FS=3.149;MLEAC=1;MLEAF=0.500;MQ=58.23;MQRankSum=-5.572;QD=12.25;ReadPosRankSum=-0.667;SOR=0.500;set=HC	GT:AD:AF:DP	0/1:154,79:0.34:233
chr4	338258	rs80241916	G	A	2750.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.692;ClippingRankSum=0.000;DB;DP=235;ExcessHet=3.0103;FS=1.767;MLEAC=1;MLEAF=0.500;MQ=58.19;MQRankSum=-5.116;QD=12.62;ReadPosRankSum=-1.403;SOR=0.561;set=HC	GT:AD:AF:DP	0/1:143,75:0.34:218
chr4	338260	rs76915575	A	G	2687.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.706;ClippingRankSum=0.000;DB;DP=231;ExcessHet=3.0103;FS=1.783;MLEAC=1;MLEAF=0.500;MQ=58.16;MQRankSum=-5.047;QD=12.56;ReadPosRankSum=-1.924;SOR=0.552;set=HC	GT:AD:AF:DP	0/1:139,75:0.35:214
chr4	338266	rs74323716	G	A	2552.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.753;ClippingRankSum=0.000;DB;DP=212;ExcessHet=3.0103;FS=4.351;MLEAC=1;MLEAF=0.500;MQ=58.31;MQRankSum=-4.404;QD=12.96;ReadPosRankSum=-2.475;SOR=0.458;set=HC	GT:AD:AF:DP	0/1:128,69:0.35:197
chr4	338289	rs77578216	A	C	945.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.065;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=2.861;MLEAC=1;MLEAF=0.500;MQ=58.59;MQRankSum=-3.690;QD=7.63;ReadPosRankSum=-2.213;SOR=0.432;set=HC	GT:AD:AF:DP	0/1:90,34:0.27:124
chr4	338296	rs77544910	G	T	853.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.727;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.68;MQRankSum=-4.177;QD=8.13;ReadPosRankSum=-1.626;SOR=0.556;set=HC	GT:AD:AF:DP	0/1:81,24:0.23:105
chr4	338301	.	G	GA	603.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.300;ClippingRankSum=0.000;DP=103;ExcessHet=3.0103;FS=1.119;MLEAC=1;MLEAF=0.500;MQ=58.82;MQRankSum=-3.486;QD=6.36;ReadPosRankSum=-0.991;SOR=0.500;set=HC	GT:AD:AF:DP	0/1:76,19:0.20:95
chr4	338302	.	G	GA	612.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=5.372;ClippingRankSum=0.000;DP=97;ExcessHet=3.0103;FS=7.446;MLEAC=1;MLEAF=0.500;MQ=59.39;MQRankSum=-3.180;QD=6.73;ReadPosRankSum=0.294;SOR=1.922;set=HC	GT:AD:AF:DP	0/1:76,15:0.16:91
chr4	338305	.	CCGGG	C	366.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=5.750;ClippingRankSum=0.000;DP=91;ExcessHet=3.0103;FS=7.515;MLEAC=1;MLEAF=0.500;MQ=59.58;MQRankSum=-3.073;QD=4.26;ReadPosRankSum=-0.444;SOR=1.949;set=HC	GT:AD:AF:DP	0/1:71,15:0.17:86
chr4	338310	.	T	TGA	381.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.714;ClippingRankSum=0.000;DP=86;ExcessHet=3.0103;FS=7.538;MLEAC=1;MLEAF=0.500;MQ=59.78;MQRankSum=-2.985;QD=4.66;ReadPosRankSum=-0.540;SOR=1.948;set=HC	GT:AD:AF:DP	0/1:67,15:0.18:82
chr4	338313	.	A	ACC	393.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.183;ClippingRankSum=0.000;DP=84;ExcessHet=3.0103;FS=7.645;MLEAC=1;MLEAF=0.500;MQ=59.78;MQRankSum=-2.940;QD=4.92;ReadPosRankSum=-1.258;SOR=2.015;set=HC	GT:AD:AF:DP	0/1:65,15:0.19:80
chr4	338322	rs78396627	T	C	300.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.483;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=3.605;MLEAC=1;MLEAF=0.500;MQ=59.79;MQRankSum=-3.099;QD=4.70;ReadPosRankSum=-2.104;SOR=1.360;set=HC	GT:AD:AF:DP	0/1:53,11:0.17:64
chr4	338334	rs75796306	A	C	81.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.235;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-2.739;QD=1.54;ReadPosRankSum=-1.203;SOR=0.465;set=HC	GT:AD:AF:DP	0/1:47,6:0.11:53
chr4	338337	rs75299168	G	C	81.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.353;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-2.709;QD=1.57;ReadPosRankSum=-1.581;SOR=0.484;set=HC	GT:AD:AF:DP	0/1:46,6:0.12:52
chr4	343795	rs3037605	C	CTGCT	4245.73	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr4	376888	rs6854214	C	A	4974.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr4	420389	rs59508097	C	G	4129.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:2,150:0.99:152
chr4	420688	rs2280250	C	T	6392.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr4	429720	rs894534	T	C	6607.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr4	438067	rs73070365	C	T	2448.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr4	466424	.	C	A	134.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.885;ClippingRankSum=0.000;DP=518;ExcessHet=3.0103;FS=7.425;MLEAC=1;MLEAF=0.500;MQ=58.82;MQRankSum=-18.612;QD=0.26;ReadPosRankSum=3.667;SOR=1.505;set=HC	GT:AD:AF:DP	0/1:475,39:0.08:514
chr4	466426	.	GG	AT	119.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.321;ClippingRankSum=0.000;DP=525;ExcessHet=3.0103;FS=8.058;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.79;MQRankSum=-18.338;QD=0.23;ReadPosRankSum=3.785;SOR=1.510;set=HC	GT:AD:AF:DP	0/1:482,39:0.07:521
chr4	466434	.	G	A	128.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.958;ClippingRankSum=0.000;DP=533;ExcessHet=3.0103;FS=6.012;MLEAC=1;MLEAF=0.500;MQ=58.79;MQRankSum=-18.095;QD=0.24;ReadPosRankSum=3.675;SOR=1.530;set=HC	GT:AD:AF:DP	0/1:489,39:0.07:528
chr4	467896	rs73072110	G	C	5768.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr4	467940	rs78633268	G	A	2881.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr4	648643	rs10902758	G	A	4223.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr4	663908	rs28675771	A	G	3526.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr4	664028	rs374413250	AT	A	88.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.765;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=1.112;QD=2.77;ReadPosRankSum=0.292;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:18,14:0.44:32
chr4	738512	rs6841958	T	C	1720.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.59;QD=43.02;SOR=2.419;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr4	738515	rs12645284	G	T	1720.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.57;QD=45.28;SOR=2.554;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr4	780286	rs10794536	C	G	2398.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr4	780552	rs80187089	C	T	988.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr4	843622	rs33919242	AC	A	1501.73	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:3,58:0.95:61
chr4	843674	rs55728587	G	A	3281.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr4	843695	rs8093	A	G	4487.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr4	845772	rs10031922	T	C	2152.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr4	858874	rs3214922	T	TC	4035.73	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:1,110:0.99:111
chr4	858941	rs1026738	T	C	2401.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr4	860146	rs2306248	A	G	1196.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr4	860192	rs1064207	A	G	2302.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr4	871624	rs1564281	C	T	3711.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr4	871675	rs1564280	A	G	1743.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr4	882625	rs2279182	T	G	6479.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:5,255:0.98:260
chr4	882643	rs2279181	G	A	7209.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:7,280:0.98:287
chr4	887513	rs33951409	AC	A	1151.73	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:3,49:0.94:52
chr4	887868	rs11726912	A	C	1396.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr4	905400	rs3830208	AG	A	787.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr4	906131	rs11248057	C	G	842.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr4	906647	rs2279178	A	G	7862.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:2,299:0.99:301
chr4	942439	rs10516158	C	T	481.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	946262	rs3066989	CTG	C	73.94	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.49;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr4	951947	rs34311866	T	C	5283.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr4	952409	rs748483	A	G	902.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr4	954277	rs3733347	T	C	1865.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr4	960081	rs4690324	G	A	5404.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr4	960331	rs11248059	C	G	3175.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:2,117:0.98:119
chr4	967191	rs17855876	G	A	344.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	980971	rs10794537	T	G	503.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	983060	rs3796622	T	C	8568.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chr4	984870	rs2290401	G	C	1043.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr4	985727	rs3822020	A	G	6297.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr4	994452	rs3755954	C	T	3046.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr4	1006333	rs4647942	G	A	6002.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:2,231:0.99:233
chr4	1019054	rs145808953	CCA	C	267.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.977;ClippingRankSum=0.000;DB;DP=324;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.95;ReadPosRankSum=0.640;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:246,36:0.13:282
chr4	1050437	rs7680608	C	G	342.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	1050653	rs3816474	G	A	1370.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr4	1050849	rs10003009	GT	AC	1589.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr4	1050909	rs9992925	A	T	425.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	1052009	rs13114658	A	G	436.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr4	1052078	rs2290410	A	T	2012.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.76;SOR=2.110;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr4	1052125	rs11724371	T	C	4170.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr4	1052166	rs2248083	A	C	5326.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr4	1052206	rs2045069	T	C	5191.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.76;SOR=0.800;set=HC	GT:AD:AF:DP	1/1:0,116:1.00:116
chr4	1052212	rs2045068	G	A	5101.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.55;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,112:1.00:112
chr4	1052355	rs2045067	C	T	561.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr4	1067267	rs2290408	G	T	562.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:1,18:0.95:19
chr4	1067638	rs6852155	T	G	2749.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr4	1084723	rs658846	G	C	1317.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr4	1087168	rs61648964	A	AAT	6048.73	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr4	1087171	rs59985183	G	T	6090.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr4	1087265	rs1670534	T	C	7620.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr4	1087327	rs138488801	G	GCTGCCCAGGCTGGAGCCAGCC	9137.73	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr4	1087329	rs118112880	C	T	9366.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=56.09;SOR=0.944;set=HC	GT:AD:AF:DP	1/1:0,167:1.00:167
chr4	1087338	rs11725984	C	T	7708.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.36;SOR=1.105;set=HC	GT:AD:AF:DP	1/1:0,182:1.00:182
chr4	1087901	rs13106356	A	G	674.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr4	1090625	rs4045481	G	A	4361.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr4	1102050	rs4974644	C	T	1251.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr4	1164277	rs2279279	C	G	3830.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr4	1164552	rs13115935	A	G	5991.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr4	1165130	rs11247975	G	T	4947.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr4	1165741	rs922697	A	G	5936.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr4	1194594	rs13115903	A	T	11216.77	.	AC=2;AF=1.00;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	1/1:0,405:1.00:405
chr4	1207517	rs11247979	T	C	172.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	1217056	rs2004531	G	A	1314.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:1,45:0.98:46
chr4	1243573	rs1680032	T	C	6994.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr4	1243617	rs3755920	T	C	4799.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr4	1244267	rs2291199	A	G	339.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.14;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	1244416	rs1732115	A	G	1735.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr4	1244879	rs1564508	A	G	8830.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:6,325:0.98:331
chr4	1291640	rs2293633	T	C	2681.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr4	1291711	rs2293634	T	G	7074.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr4	1291791	rs2293635	A	G	9152.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:0,347:1.00:347
chr4	1303682	rs13112706	G	T	393.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	1316326	rs2335798	C	T	2104.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr4	1317192	rs2141656	C	T	579.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr4	1330759	rs1128427	T	C	11004.77	.	AC=2;AF=1.00;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	1/1:0,418:1.00:418
chr4	1332175	rs13147602	A	G	2567.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr4	1343405	rs2276903	T	C	6441.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr4	1343720	rs11247994	G	A	1355.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:1,50:0.98:51
chr4	1348691	rs33989352	T	TG	1641.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.217;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.65;ReadPosRankSum=-1.303;SOR=0.527;set=HC	GT:AD:AF:DP	1/1:3,61:0.95:64
chr4	1348806	rs3903127	A	C	2411.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr4	1369093	rs11941200	CT	GG	2120.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr4	1369885	rs11724369	G	A	2845.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr4	1373699	rs112142388	C	CTTT	1449.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr4	1373701	rs56108910	C	G	1458.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr4	1373751	rs35735964	G	T	1817.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:1,67:0.99:68
chr4	1374695	rs28614045	C	A	7728.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr4	1374774	rs28522910	C	T	2944.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr4	1374789	rs28733902	A	G	2238.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr4	1377615	rs9996817	A	G	4731.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr4	1388350	.	G	GTGCCCATGTGGAGTGCCCGCCTGCTCACACA	13701.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.770;ClippingRankSum=0.000;DP=349;ExcessHet=3.0103;FS=3.322;MLEAC=2;MLEAF=1.000;MQ=57.44;MQRankSum=-0.418;QD=51.70;ReadPosRankSum=1.227;SOR=0.467;set=HC	GT:AD:AF:DP	1/1:1,264:1.00:265
chr4	1388375	.	T	TCA	2971	.	AC=1;AF=0.500;AN=2;BRF=0.59;FR=0.5000;HP=2;HapScore=4;MGOF=37;MMLQ=28;MQ=53.79;NF=17;NR=57;PP=2971;QD=20;SC=GCCCGCCTGCTCATGTGCCCA;SbPval=0.85;Source=Platypus;TC=173;TCF=52;TCR=121;TR=74;WE=1388387;WS=1388355;set=Platypus	GT:AD:AF:DP	1/0:99,74:0.43:173
chr4	1388413	rs78309237	T	C	12221.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.618;ClippingRankSum=0.000;DB;DP=280;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.54;MQRankSum=-0.651;QD=43.81;ReadPosRankSum=1.346;SOR=0.715;set=HC	GT:AD:AF:DP	1/1:2,277:0.99:279
chr4	1388413	.	TC	CC	2962	.	AC=1;AF=0.500;AN=2;BRF=0.6;FR=0.5000,0.5000;HP=1;HapScore=1;MMLQ=11;NF=88,1;NR=85,18;PP=2962,2954;QD=20;SC=CTCACACATGTCGATGCGGAG;Source=Platypus;TCF=97;TR=173,19;WE=1388437;WS=1388394;set=Platypus	GT:AD:AF:DP	0/1:41,173:0.81:214
chr4	1388413	.	TC	TGCC	2962	.	AC=1;AF=0.500;AN=2;BRF=0.6;FR=0.5000,0.5000;HP=1;HapScore=1;MMLQ=11;NF=88,1;NR=85,18;PP=2962,2954;QD=20;SC=CTCACACATGTCGATGCGGAG;Source=Platypus;TCF=97;TR=173,19;WE=1388437;WS=1388394;set=Platypus	GT:AD:AF:DP	0/1:132,19:0.13:151
chr4	1388429	rs79298048	G	A	12214.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.219;ClippingRankSum=0.000;DB;DP=313;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.63;MQRankSum=-0.506;QD=39.53;ReadPosRankSum=0.287;SOR=0.824;set=HC	GT:AD:AF:DP	1/1:2,307:0.99:309
chr4	1388583	rs9328733	A	G	9662.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.25;QD=37.02;SOR=0.831;set=HC	GT:AD:AF:DP	1/1:0,261:1.00:261
chr4	1388625	.	C	CACGTGCCGATGCGGA	5154.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.078;ClippingRankSum=0.000;DP=231;ExcessHet=3.0103;FS=12.259;MLEAC=2;MLEAF=1.000;MQ=59.87;MQRankSum=1.644;QD=25.39;ReadPosRankSum=1.229;SOR=0.135;set=HC	GT:AD:AF:DP	1/1:4,199:0.98:203
chr4	1388631	.	C	CGCCTGCTCACACGTGCCG	7636.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.568;ClippingRankSum=0.000;DP=187;ExcessHet=3.0103;FS=6.110;MLEAC=2;MLEAF=1.000;MQ=58.52;MQRankSum=2.372;QD=42.43;ReadPosRankSum=0.783;SOR=0.112;set=HC	GT:AD:AF:DP	1/1:3,177:0.98:180
chr4	1388635	rs74518227	T	C	5692.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.447;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=9.502;MLEAC=2;MLEAF=1.000;MQ=55.32;MQRankSum=1.930;QD=40.09;ReadPosRankSum=1.188;SOR=0.249;set=HC	GT:AD:AF:DP	1/1:3,139:0.98:142
chr4	1389101	rs71614971	A	G	7988.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.78;QD=35.04;SOR=0.822;set=HC	GT:AD:AF:DP	1/1:0,228:1.00:228
chr4	1389156	rs71614972	T	C	10493.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.21;QD=44.85;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,234:1.00:234
chr4	1389161	rs71614973	A	G	10267.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.23;QD=43.32;SOR=0.719;set=HC	GT:AD:AF:DP	1/1:0,237:1.00:237
chr4	1397297	rs11945310	T	G	1017.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr4	1397611	rs13133264	A	C	3559.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:2,138:0.99:140
chr4	1698183	rs798719	C	T	2495.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr4	1701317	rs2247341	G	A	11375.77	.	AC=2;AF=1.00;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	1/1:1,419:1.00:420
chr4	1714161	rs812821	T	C	300.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	1718883	rs2236787	A	T	415.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	1719417	.	G	GCTGCTGGGCCCCT	4077.73	.	AC=2;AF=1.00;AN=2;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr4	1719572	rs798751	A	G	693.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr4	1720757	rs798754	A	G	497.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	1720793	rs148117097	A	AG	1312.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr4	1720794	rs61675353	T	G	1321.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr4	1720824	rs798755	A	G	1570.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr4	1725651	rs3099555	T	C	2213.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr4	1737108	rs3752747	C	T	3163.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr4	1737404	rs34859791	C	CCT	9157.73	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr4	1737502	rs11248073	C	T	5491.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr4	1737585	rs11729657	T	C	1917.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr4	1739518	rs140693140	CGCCATCCCT	C	8168.73	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr4	1739592	rs2305188	A	G	5333.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr4	1741485	rs150991238	C	T	2315.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr4	1742400	rs4865463	T	C	173.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr4	1742779	rs1530588	G	A	264.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	1746229	rs2290011	G	T	3315.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr4	1746844	rs8389	A	T	3056.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:1,128:0.99:129
chr4	1795333	rs17879199	C	T	285.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.98;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	1805296	rs3135883	G	A	1236.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr4	1806834	rs4865476	G	C	533.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr4	1807894	rs7688609	G	A	9827.77	.	AC=2;AF=1.00;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	1/1:0,368:1.00:368
chr4	1809110	.	CTG	C	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.973;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.76;MQRankSum=0.608;QD=0.86;ReadPosRankSum=-0.235;SOR=0.558;set=HC	GT:AD:AF:DP	0/1:39,6:0.13:45
chr4	1809127	rs34562534	CGT	C	1399.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.75;QD=34.14;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr4	1818594	rs9328763	C	T	6684.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr4	1843324	rs116753949	C	T	6810.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:1,241:1.00:242
chr4	1954945	rs489550	A	G	7014.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr4	1961137	rs474235	G	A	1988.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr4	1980561	rs149925711	C	T	6150.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr4	1994102	rs1116585	G	A	6429.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:1,237:1.00:238
chr4	2009095	rs382441	C	T	3347.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:3,121:0.98:124
chr4	2010831	rs231189	G	C	1199.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr4	2044128	rs570712	C	T	1836.73	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:2,74:0.97:76
chr4	2044311	rs7654492	C	A	282.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr4	2158102	rs200091082	CTT	C,CT	913.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.415;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.12;MQRankSum=0.493;QD=11.28;ReadPosRankSum=0.378;SOR=0.717;set=HC	GT:AD:AF:DP	1/2:14,24,43:0.30,0.53:81
chr4	2158352	rs137954994	TCTC	T	1828.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr4	2158408	rs428361	C	T	2385.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr4	2159449	.	CAAAAAAA	C	555.73	.	AC=2;AF=1.00;AN=2;ClippingRankSum=0.000;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.37;MQRankSum=0.000;QD=34.73;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:1,15:0.94:16
chr4	2175733	rs2022302	A	G	8260.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr4	2175791	rs2022343	TC	CG	7555.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr4	2176351	rs12647917	G	A	2117.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr4	2176454	rs9328764	G	A	2869.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr4	2176506	rs6822665	C	T	1529.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.19;QD=26.38;SOR=1.733;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr4	2176551	.	CT	C	135.52	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.101;ClippingRankSum=0.000;DP=23;ExcessHet=3.0103;FS=5.611;MLEAC=1;MLEAF=0.500;MQ=60.47;MQRankSum=0.000;QD=8.47;ReadPosRankSum=-0.840;SOR=3.611;set=HC	GT:AD:AF:DP	0/1:4,12:0.75:16
chr4	2178108	rs6599411	C	T	1065.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr4	2178127	rs6599412	T	G	902.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr4	2178149	rs6599413	G	A	627.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr4	2179074	rs6810845	A	G	3999.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr4	2179086	rs6816862	T	C	3876.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr4	2181016	rs35787308	T	C	933.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr4	2181080	rs6830513	T	C	2142.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr4	2181276	rs35024704	G	T	1400.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr4	2181313	rs6820291	C	G	706.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	2194901	rs10015921	A	C	3233.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr4	2194946	rs10011549	C	T	5242.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.97;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,122:1.00:122
chr4	2194953	rs10002583	G	A	5194.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.02;SOR=0.762;set=HC	GT:AD:AF:DP	1/1:0,118:1.00:118
chr4	2195024	rs10018786	T	G	2721.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr4	2195089	rs10018882	T	C	1285.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr4	2195128	rs10016105	A	G	613.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr4	2233709	rs11937432	A	G	1340.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:1,52:0.98:53
chr4	2251893	rs61789367	G	A	3380.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr4	2252845	rs2233042	C	T	1576.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:2,63:0.97:65
chr4	2252980	rs2071658	T	G	2032.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr4	2256798	rs2236999	T	C	1282.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr4	2260812	rs28619238	T	C	966.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr4	2262191	rs2269487	A	G	2164.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr4	2275145	rs736455	G	A	1254.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr4	2275718	rs2182682	G	A	5425.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr4	2275835	rs2051561	G	A	8394.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr4	2276047	rs11248093	T	C	557.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	2306053	rs661301	A	G	4933.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:4,178:0.98:182
chr4	2322039	rs113929105	G	GC	5390.73	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr4	2337603	rs599642	GC	TT	3160.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr4	2339330	rs73203396	G	A	1844.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr4	2341194	rs2071680	T	C	8820.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:0,334:1.00:334
chr4	2343150	rs3118613	T	A	521.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	2343349	rs615447	C	G	4809.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:1,179:0.99:180
chr4	2451694	rs3108494	T	C	9026.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:2,333:0.99:335
chr4	2452791	rs5855732	AC	A	6232.73	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr4	2452933	rs3888113	T	C	4142.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr4	2460803	rs704346	A	G	2155.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr4	2461888	rs3135152	A	G	6435.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr4	2826400	rs3213501	T	C	10715.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.557;ClippingRankSum=0.000;DB;DP=403;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.72;ReadPosRankSum=0.882;SOR=0.231;set=HC	GT:AD:AF:DP	1/1:1,400:1.00:401
chr4	2828527	rs62637096	G	C	2200.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr4	2828630	rs72613119	G	T	3168.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:2,120:0.98:122
chr4	2906957	rs17777371	C	G	579.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr4	2928125	rs1263345	C	T	1852.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:2,68:0.97:70
chr4	2928413	rs4964	T	C	1985.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr4	2933271	rs1263348	G	A	8258.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr4	2934308	rs1263349	G	A	13713.77	.	AC=2;AF=1.00;AN=2;DB;DP=515;set=Intersection	GT:AD:AF:DP	1/1:0,505:1.00:505
chr4	2935251	rs2301374	T	A	6687.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr4	2940737	rs115528605	C	T	5773.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:2,210:0.99:212
chr4	2951804	rs2515960	A	G	10514.77	.	AC=2;AF=1.00;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	1/1:3,399:0.99:402
chr4	3029623	rs7677445	A	G	2776.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr4	3039150	rs1801058	T	C	2777.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr4	3039311	rs2071689	C	T	480.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	3040279	rs11451355	G	GA	890.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.828;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=1.789;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.70;ReadPosRankSum=0.129;SOR=0.349;set=HC	GT:AD:AF:DP	0/1:11,54:0.83:65
chr4	3144441	rs363107	A	G	1893.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr4	3180021	rs363096	T	C	1201.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr4	3219613	rs2857790	A	C	2511.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr4	3230804	rs2530598	A	C	1361.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.894;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=27.24;ReadPosRankSum=-0.380;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:1,49:0.98:50
chr4	3240526	rs2858081	A	G	1618.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr4	3318413	rs2236052	A	G	4941.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr4	3344891	rs2073286	T	C	620.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr4	3417845	rs3213507	G	C	6846.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:4,256:0.98:260
chr4	3443931	rs13108218	A	G	1313.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr4	3445745	rs4690097	C	T	4630.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr4	3446132	rs1987546	C	G	2463.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:1,90:0.99:91
chr4	3446751	rs3752439	T	C	1839.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr4	3446883	rs3752442	A	G	2036.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr4	3447156	rs4690098	C	T	1928.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr4	3475252	rs4325970	T	C	1337.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr4	3516689	rs2515967	T	C	5433.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr4	3589623	rs10937959	G	A	1102.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:35,44:0.56:79
chr4	3589669	.	G	GACTTCCTGGTGCACCTGC	1721.73	.	AC=1;AF=0.500;AN=2;DP=177;set=Intersection	GT:AD:AF:DP	0/1:100,57:0.36:157
chr4	3589689	rs7657417	C	A	2947.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:144,142:0.50:286
chr4	3589719	rs59190481	CA	C	14549.73	.	AC=2;AF=1.00;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	1/1:0,367:1.00:367
chr4	3589846	rs7672828	T	C	3519.77	.	AC=1;AF=0.500;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	0/1:163,163:0.50:326
chr4	3590537	rs73199384	G	C	463.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:23,19:0.45:42
chr4	3590549	rs73793633	G	A	638.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:29,27:0.48:56
chr4	3590577	rs73793634	G	A	3083.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr4	3590588	rs73199385	A	C	892.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:64,44:0.41:108
chr4	3590683	rs62272966	T	G	5728.77	.	AC=1;AF=0.500;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	0/1:243,161:0.40:404
chr4	3590711	rs62272967	G	T	6093.77	.	AC=1;AF=0.500;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	0/1:255,163:0.39:418
chr4	3590730	rs62272968	G	A	5783.77	.	AC=1;AF=0.500;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	0/1:225,160:0.42:385
chr4	3590817	rs62272969	T	C	3165.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:165,146:0.47:311
chr4	3590823	rs72180705	GACAC	G,GAC	10207.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.076;ClippingRankSum=0.000;DB;DP=335;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.35;MQRankSum=0.226;QD=33.91;ReadPosRankSum=-0.259;SOR=0.410;set=HC	GT:AD:AF:DP	1/2:1,178,122:0.59,0.41:301
chr4	3590878	rs62272970	C	T	8908.77	.	AC=1;AF=0.500;AN=2;DB;DP=569;set=Intersection	GT:AD:AF:DP	0/1:319,241:0.43:560
chr4	3590911	rs34447251	A	C	9732.77	.	AC=1;AF=0.500;AN=2;DB;DP=662;MQ=60.13;set=Intersection	GT:AD:AF:DP	0/1:374,282:0.43:656
chr4	3591015	rs62272971	A	C	8387.77	.	AC=1;AF=0.500;AN=2;DB;DP=1073;set=Intersection	GT:AD:AF:DP	0/1:618,440:0.42:1058
chr4	3591049	rs62272972	C	T	9804.77	.	AC=1;AF=0.500;AN=2;DB;DP=1238;set=Intersection	GT:AD:AF:DP	0/1:742,491:0.40:1233
chr4	3591069	rs62272973	C	T	18106.77	.	AC=1;AF=0.500;AN=2;DB;DP=1229;set=Intersection	GT:AD:AF:DP	0/1:717,505:0.41:1222
chr4	3769789	rs11269124	G	GGGGGAGCTTTCCCAGAGACCC	2668.73	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr4	4190511	.	G	GTCACTTGTTA	109.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.094;ClippingRankSum=0.000;DP=113;ExcessHet=3.0103;FS=3.652;MLEAC=1;MLEAF=0.500;MQ=59.51;MQRankSum=-10.514;QD=0.98;ReadPosRankSum=-2.057;SOR=1.587;set=HC	GT:AD:AF:DP	0/1:104,8:0.07:112
chr4	4190792	rs2920255	A	C	1046.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr4	4199083	rs34666677	T	G	7423.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:2,288:0.99:290
chr4	4199634	rs2916414	A	T	7007.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr4	4228029	rs36055674	A	AAAG	547.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.13;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	4239516	rs62286913	C	T	1666.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:78,51:0.40:129
chr4	4239539	rs62286914	C	T	1277.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:97,37:0.28:134
chr4	4239587	rs62286915	G	T	102.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.568;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=43.778;MLEAC=1;MLEAF=0.500;MQ=56.80;MQRankSum=-8.531;QD=0.77;ReadPosRankSum=-1.702;SOR=3.480;set=HC	GT:AD:AF:DP	0/1:115,18:0.14:133
chr4	4249483	rs2916466	C	T	5905.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:1,214:1.00:215
chr4	4275430	.	T	C	547.77	.	AC=2;AF=1.00;AN=2;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr4	4275976	rs11723469	A	C	2681.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.70;SOR=2.381;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr4	4275986	rs11723471	A	C	3023.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.32;SOR=2.599;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr4	4276021	rs12639962	C	G	4203.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr4	4276132	rs7376390	T	C	9627.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:0,346:1.00:346
chr4	4285221	rs2980214	A	C	1767.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr4	4301537	rs60953649	T	A	597.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	4304337	rs2916382	C	T	6932.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr4	4411215	.	T	TG	1365.73	.	AC=2;AF=1.00;AN=2;DP=53;set=Intersection	GT:AD:AF:DP	1/1:1,50:0.98:51
chr4	4411559	rs7655690	T	C	2225.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr4	4425329	rs62289797	C	T	2557.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr4	4425422	rs10675705	C	CAG	1134.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr4	4436436	rs6825715	T	C	1306.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.62;SOR=0.732;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr4	4459301	rs62289812	A	G	4036.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr4	4461254	rs73796011	G	A	7663.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:3,294:0.99:297
chr4	4473216	rs6816884	G	A	152.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr4	4473577	rs6846409	A	G	37.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.87;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr4	4862125	rs149370601	AGGGGGCCGGGT	A	2794.73	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr4	5016841	rs6847131	G	T	682.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr4	5017146	rs67449859	A	AT	501.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.81;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	5017149	.	T	TTCATTTC	439	.	AC=2;AF=1.00;AN=2;BRF=0.41;FR=1.0000;HP=2;HapScore=4;MGOF=11;MMLQ=28;MQ=60.0;NF=0;NR=6;PP=439;QD=78.0;SC=AAATTTCATTTCCATAATTTT;SbPval=1.0;Source=Platypus;TC=9;TCF=0;TCR=9;TR=6;WE=5017158;WS=5017139;set=Platypus	GT:AD:AF:DP	1/1:3,6:0.67:9
chr4	5017150	.	C	A	139	.	AC=2;AF=1.00;AN=2;BRF=0.41;FR=1.0000;HP=3;HapScore=4;MGOF=11;MMLQ=24;MQ=60.0;NF=1;NR=6;PP=139;QD=24.8244589353;SC=AATTTCATTTCCATAATTTTC;SbPval=0.65;Source=Platypus;TC=7;TCF=1;TCR=6;TR=7;WE=5017158;WS=5017139;set=Platypus	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	5017150	rs34659865	C	CATTTCA	502.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.89;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	5018702	rs11724788	G	A	5835.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr4	5053674	rs10222952	C	T	11343.77	.	AC=2;AF=1.00;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	1/1:1,423:1.00:424
chr4	5128650	rs895679	T	C	1434.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr4	5418383	rs2301858	G	A	739.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:1,25:0.96:26
chr4	5418539	rs168985	C	T	6837.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:3,257:0.99:260
chr4	5448293	.	C	CA	234.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.150;ClippingRankSum=0.000;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.000;QD=1.78;ReadPosRankSum=2.566;SOR=0.609;set=HC	GT:AD:AF:DP	0/1:98,34:0.26:132
chr4	5469810	rs2301855	T	C	2700.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr4	5469916	rs41268643	G	A	632.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr4	5500511	rs13116133	A	C	999.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr4	5527008	rs2267655	C	T	686.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr4	5527249	rs2267654	A	G	4539.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr4	5528115	rs3078935	ATT	A,AT	1465.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.446;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=9.258;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=20.64;ReadPosRankSum=0.062;SOR=1.414;set=HC	GT:AD:AF:DP	1/2:2,54,15:0.76,0.21:71
chr4	5570104	rs12508361	T	C	209.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	5570221	rs12511039	G	A	1071.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr4	5577884	rs6840591	T	C	1755.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr4	5642161	rs751841	A	G	932.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr4	5686924	rs957727	G	A	1553.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr4	5686967	rs957726	C	T	2694.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr4	5687263	rs998092	A	G	1225.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr4	5699473	.	C	CT,CTT	556.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.703;ClippingRankSum=0.000;DP=61;ExcessHet=3.0103;FS=3.398;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=14.28;ReadPosRankSum=0.812;SOR=2.274;set=HC	GT:AD:AF:DP	1/2:7,15,17:0.38,0.44:39
chr4	5730954	rs2276875	G	A	2595.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:1,97:0.99:98
chr4	5743509	rs6446393	C	T	1794.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.77;SOR=0.741;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr4	5743512	rs6414624	T	C	1794.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.77;SOR=0.741;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr4	5747072	rs2286343	C	T	3635.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr4	5757932	rs5855888	GA	G	2115.73	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:11,119:0.92:130
chr4	5757944	rs4642178	A	C	6256.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:1,160:0.99:161
chr4	5759607	rs12505053	G	A	134.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr4	5759860	rs6828631	A	G	1651.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:1,65:0.98:66
chr4	5830414	rs6818391	T	C	6364.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr4	5863032	rs13130069	G	A	1570.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr4	5925186	rs4348041	G	A	897.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr4	5966618	rs6828891	A	G	1047.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.52;QD=29.94;SOR=2.649;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr4	5969113	rs9997727	G	A	1749.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr4	5969235	rs7690750	A	G	2582.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr4	5969252	rs7690889	A	G	2213.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr4	5969292	rs6446420	C	A	1379.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr4	5969303	rs6446421	T	A	1274.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr4	5969364	rs6446422	T	C	288.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	5975538	rs16837960	G	A	3629.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr4	5982158	.	G	GT	74.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.703;ClippingRankSum=0.000;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.92;ReadPosRankSum=-0.131;SOR=0.876;set=HC	GT:AD:AF:DP	0/1:28,11:0.28:39
chr4	5990599	rs751240	T	C	6526.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:1,233:1.00:234
chr4	5990868	rs143859826	CCT	C	114.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.871;ClippingRankSum=0.000;DB;DP=365;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.37;ReadPosRankSum=0.179;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:262,46:0.15:308
chr4	6027812	rs147716690	A	G	2228.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr4	6037962	rs144043838	G	A	1170.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr4	6050724	.	G	GT,GTT	3150.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.873;ClippingRankSum=0.000;DP=222;ExcessHet=3.0103;FS=1.138;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.05;MQRankSum=0.306;QD=18.11;ReadPosRankSum=-0.567;SOR=1.041;set=HC	GT:AD:AF:DP	1/2:13,128,33:0.74,0.19:174
chr4	6056379	rs66499852	T	C	826.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr4	6056406	rs16838127	T	C	1096.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr4	6058620	rs16838135	C	T	1146.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr4	6062061	rs28553970	T	C	850.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr4	6062117	rs6852114	T	A	2214.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr4	6066556	rs150343884	G	T	1615.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr4	6086752	rs10516179	G	T	1493.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr4	6114420	rs1543965	GCC	TAA	14692.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;JOINED;set=Intersection	GT:AD:AF:DP	1/1:2,325:0.99:327
chr4	6335186	rs4689405	C	T	2065.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr4	6415803	rs71872229	ATGTGTGTG	A	488.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.21;QD=37.59;SOR=3.767;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	6536979	rs13141184	G	A	2630.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr4	6578487	rs4689485	A	G	4795.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:2,180:0.99:182
chr4	6594827	rs10937747	A	G	7850.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr4	6596360	rs2301795	G	A	4119.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr4	6611037	rs200521277	G	A	1746.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr4	6619052	rs4689488	A	G	1445.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr4	6619165	rs4689489	A	G	6532.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr4	6619378	rs7698546	T	C	2481.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr4	6623032	rs4234768	G	T	8408.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chr4	6698500	rs113431497	C	CTGAGCCTGAA	592.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr4	6698667	rs11734898	T	C	3262.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr4	6698706	rs11733989	A	C	3193.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr4	6955922	rs4484301	C	G	1341.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:2,50:0.96:52
chr4	6956134	rs11732898	T	C	7399.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr4	6968942	rs9291126	C	T	1468.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr4	6988994	.	CGGGA	C	43.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.524;ClippingRankSum=0.000;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.43;ReadPosRankSum=-0.712;SOR=0.193;set=HC	GT:AD:AF:DP	0/1:15,3:0.17:18
chr4	6996077	.	TACA	T	5277.73	.	AC=2;AF=1.00;AN=2;DP=131;set=Intersection	GT:AD:AF:DP	1/1:1,120:0.99:121
chr4	6998262	.	TA	T	112.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.508;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=3.554;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.82;ReadPosRankSum=-1.633;SOR=0.132;set=HC	GT:AD:AF:DP	0/1:25,15:0.38:40
chr4	7027041	rs6834102	C	T	1303.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr4	7044357	rs871133	A	G	2320.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr4	7044380	rs871134	C	T	2125.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr4	7044600	rs2359010	G	A	6135.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr4	7064003	rs11422620	A	AC	1371.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.19;SOR=2.160;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr4	7064214	rs9291128	T	G	8813.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.79;SOR=1.390;set=HC	GT:AD:AF:DP	1/1:0,206:1.00:206
chr4	7064218	rs60881938	TA	T	1301.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.500;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=8.052;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.83;ReadPosRankSum=-0.499;SOR=1.611;set=HC	GT:AD:AF:DP	0/1:29,81:0.74:110
chr4	7064219	rs28636568	A	T	242.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.367;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=8.052;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.21;ReadPosRankSum=0.475;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:81,29:0.26:110
chr4	7064220	rs376145748	TATATA	T	1108.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.687;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=8.302;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.99;ReadPosRankSum=-0.466;SOR=1.681;set=HC	GT:AD:AF:DP	0/1:39,72:0.65:111
chr4	7064243	rs6812318	C	T	2190.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:14,102:0.88:116
chr4	7064277	rs4689585	C	T	1592.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr4	7066052	rs2359011	TA	GC	2469.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr4	7069606	rs2276969	G	A	3065.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr4	7069804	rs3822270	C	A	12527.77	.	AC=2;AF=1.00;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	1/1:0,467:1.00:467
chr4	7069901	rs3822269	T	C	6236.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr4	7312145	rs11942816	T	C	2901.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr4	7398094	rs75252298	C	G	1765.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr4	7398194	rs9991834	A	G	407.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	7434988	rs4318651	A	G	2748.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr4	7435379	rs4689746	A	G	7100.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr4	7435797	rs34136551	G	A	14591.77	.	AC=2;AF=1.00;AN=2;DB;DP=553;set=Intersection	GT:AD:AF:DP	1/1:5,539:0.99:544
chr4	7461826	rs10655902	C	CCCA	11036.73	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr4	7461915	rs12498272	T	A	5640.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:1,210:1.00:211
chr4	7639974	rs73202520	G	C	2794.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:1,91:0.99:92
chr4	7655855	rs2285789	C	T	4123.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr4	7666241	rs28634313	C	T	2378.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr4	7668880	rs33978179	C	T	10740.77	.	AC=2;AF=1.00;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	1/1:3,410:0.99:413
chr4	7668966	rs76551529	T	C	5011.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr4	7684544	rs35306661	C	T	3151.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr4	7691193	rs929264	G	C	5883.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:2,221:0.99:223
chr4	7691375	rs76278311	A	G	3751.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr4	7699042	rs74567113	C	T	766.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr4	7716932	rs6816604	T	C	20013.77	.	AC=2;AF=1.00;AN=2;DB;DP=750;set=Intersection	GT:AD:AF:DP	1/1:1,742:1.00:743
chr4	7717012	rs2285781	G	A	14864.77	.	AC=2;AF=1.00;AN=2;DB;DP=551;set=Intersection	GT:AD:AF:DP	1/1:0,547:1.00:547
chr4	7726847	rs2285777	A	G	11207.77	.	AC=2;AF=1.00;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	1/1:0,410:1.00:410
chr4	7728472	rs2301746	C	T	3356.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr4	7728658	rs2301745	C	T	4134.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr4	7730022	rs200900789	C	T	6125.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:3,226:0.99:229
chr4	7780582	rs41264705	C	T	4680.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr4	7783163	rs28542374	G	A	2759.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr4	7802292	rs11728778	G	A	5552.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr4	7820727	rs4447865	T	A	760.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr4	7840561	rs141894787	TCA	T	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.935;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.57;ReadPosRankSum=-3.868;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:20,6:0.23:26
chr4	7857230	rs61742221	C	T	3277.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr4	7940857	rs7695142	A	G	3204.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr4	7940903	rs7695170	A	G	9667.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr4	7940915	rs7669645	C	T	6071.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:2,230:0.99:232
chr4	7941318	rs60272249	T	C	3086.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr4	7941346	rs58349148	G	C	3030.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr4	8009759	rs17180256	G	A	3122.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr4	8031471	rs2385904	A	G	4952.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr4	8046865	rs59097324	G	A	1710.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr4	8062638	rs6853485	A	C	2613.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr4	8062689	rs6811028	TG	CA	4361.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr4	8062830	rs16841624	C	T	682.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr4	8062871	rs6853901	A	C	297.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	8211624	rs1712316	C	T	638.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr4	8214636	rs1712287	T	C	571.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr4	8216099	rs2291069	G	A	849.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr4	8216391	rs1618403	C	T	1960.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr4	8217829	rs1712290	C	A	2021.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr4	8224414	rs113477900	T	TGTC	888.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.41;QD=40.40;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr4	8228627	rs1678299	G	C	2224.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.40;SOR=2.256;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr4	8228632	rs1678300	A	C	2298.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.57;SOR=2.137;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr4	8228731	rs1281145	T	C	5401.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr4	8228894	rs1292647	T	C	3282.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr4	8229218	rs1281146	A	G	4766.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr4	8229326	rs1281147	T	C	5517.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr4	8229713	rs1281148	A	G	10040.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	1/1:0,356:1.00:356
chr4	8229774	rs1281149	C	T	12104.77	.	AC=2;AF=1.00;AN=2;DB;DP=470;set=Intersection	GT:AD:AF:DP	1/1:0,463:1.00:463
chr4	8230070	rs1281150	T	C	2749.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr4	8230235	rs1281151	T	C	3481.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr4	8237096	rs1678260	G	C	910.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr4	8242466	rs1281103	A	G	6633.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr4	8304038	rs4696797	T	C	1525.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr4	8358361	rs3733532	G	A	10428.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;MQ=59.99;set=Intersection	GT:AD:AF:DP	1/1:2,370:0.99:372
chr4	8368944	rs12646666	C	T	292.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	8376402	rs7700122	T	G	978.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr4	8415982	rs2245515	C	T	1584.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr4	8451656	.	A	ATTTTCTTTTC,ATTTTC	466.73	.	AC=2,0;AF=1.00,0.00;AN=2;DP=33;set=Intersection	GT:AF:DP	1/1:1.00:13
chr4	8454469	rs113210446	G	GA	49.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.612;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.55;ReadPosRankSum=0.306;SOR=0.518;set=HC	GT:AD:AF:DP	0/1:22,10:0.31:32
chr4	8454639	rs1880024	A	G	3911.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr4	8473050	rs2631768	G	A	950.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr4	8594574	rs2302583	T	C	6054.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.18;SOR=1.239;set=HC	GT:AD:AF:DP	1/1:0,134:1.00:134
chr4	8594577	rs34964084	C	T	6063.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.26;SOR=1.204;set=HC	GT:AD:AF:DP	1/1:0,137:1.00:137
chr4	8594815	rs4411969	T	G	2488.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr4	8601298	rs11723641	G	A	7060.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr4	8601381	rs7671320	A	G	5111.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr4	8602793	rs4299567	T	C	1744.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr4	8602816	rs4594711	A	G	2107.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr4	8602884	rs4301095	T	C	4112.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr4	8602935	rs4431213	A	G	6099.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr4	8605818	rs6852001	C	T	4987.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr4	8607587	rs4696703	G	A	2129.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr4	8612722	rs72237922	TTCACTCATTCAC	T	1403.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr4	8613026	rs3796727	G	A	3390.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr4	8613152	rs3796726	G	A	420.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	8613908	rs34978619	G	A	1473.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.94;SOR=1.739;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr4	8613917	rs12511563	C	G	1278.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.67;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr4	8613918	rs12508541	G	T	1243.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.42;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr4	8613961	rs13120023	G	A	376.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	8616179	rs7378066	T	C	7177.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr4	8620023	rs6447885	G	A	1568.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr4	8620045	rs4444816	A	G	2009.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr4	8620103	rs7670383	C	T	4159.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr4	8620325	rs4696872	A	G	3705.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr4	8621194	rs28514374	A	G	6373.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr4	8621392	rs1050465	G	A	1339.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr4	8869587	rs13303225	T	C	433.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	9370646	rs200900174	G	T	207.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.664;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=32.147;MLEAC=1;MLEAF=0.500;MQ=40.79;MQRankSum=0.860;QD=3.06;ReadPosRankSum=-2.449;SOR=2.947;set=HC	GT:AD:AF:DP	0/1:54,14:0.21:68
chr4	9370690	rs10032245	G	C	1881.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.34;QD=30.85;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr4	9370897	rs6857841	C	T	238.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	9784631	rs6283	C	T	3767.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr4	9889448	rs6818572	G	A	768.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:1,30:0.97:31
chr4	9892102	rs10939602	T	C	921.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr4	9922167	rs16890979	C	T	8182.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chr4	9982330	rs13125646	A	G	5492.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr4	10027509	.	G	GA	125.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.527;ClippingRankSum=0.000;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.50;ReadPosRankSum=-1.915;SOR=0.808;set=HC	GT:AD:AF:DP	0/1:66,18:0.21:84
chr4	10079377	rs34193855	C	T	4122.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr4	10090178	rs4235349	T	C	8383.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr4	10094671	rs3822247	G	A	8628.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	1/1:0,346:1.00:346
chr4	10094783	rs3822245	T	C	5845.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr4	10099340	rs13441	T	C	2684.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr4	10100801	rs2241484	T	C	531.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.73;SOR=6.869;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr4	10100812	rs2241485	A	G	725.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.88;SOR=5.211;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr4	10105739	rs3756224	C	T	908.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr4	10118350	rs34768406	C	A	4137.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:2,158:0.99:160
chr4	10118377	rs11557743	C	G	3232.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr4	10446385	rs9291410	C	T	8566.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr4	10447168	rs66538112	C	G	6305.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr4	10492187	rs189381725	A	G	2738.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr4	10502937	rs2903960	T	G	6875.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr4	10542058	rs1962796	C	G	6650.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.37;SOR=0.805;set=HC	GT:AD:AF:DP	1/1:0,243:1.00:243
chr4	10573532	.	T	G	3172.77	.	AC=2;AF=1.00;AN=2;DP=117;set=Intersection	GT:AD:AF:DP	1/1:2,113:0.98:115
chr4	10669522	rs13136927	A	C	4404.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr4	13548796	rs2080023	T	G	7991.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr4	13571901	rs7661090	C	T	820.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr4	13578405	rs2052159	A	G	903.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr4	13582680	.	TA	T	102.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.360;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.54;ReadPosRankSum=-0.337;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:18,11:0.38:29
chr4	13593336	rs758975	A	G	419.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr4	13629437	rs34798341	G	T	1143.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:2,41:0.95:43
chr4	13629682	rs13435267	C	T	3103.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr4	15004655	rs7435318	G	A	15340.77	.	AC=2;AF=1.00;AN=2;DB;DP=609;set=Intersection	GT:AD:AF:DP	1/1:2,594:1.00:596
chr4	15005604	rs112476821	G	A	7511.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr4	15009232	rs1874207	C	T	1418.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr4	15059987	rs987399	AA	GG	1544.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr4	15443685	rs13108125	T	G	636.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr4	15480225	rs9993580	A	C	960.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr4	15482477	rs10000250	A	G	3440.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr4	15517756	rs58218122	AT	A	373.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:1,23:0.96:24
chr4	15538744	rs1558572	T	G	821.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr4	15539498	rs1861044	A	G	5712.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr4	15552295	rs2041672	A	G	95.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.76;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr4	15552332	rs182912322	G	A	173.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr4	15552423	rs2041673	C	T	1102.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr4	15560750	rs35309200	G	T	3152.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr4	15562342	rs67224550	C	T	133.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr4	15568992	rs13121363	T	C	2605.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr4	15569146	rs13116304	A	C	3908.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr4	15575718	rs4280723	C	G	535.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	15587897	rs6832789	A	T	6587.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr4	15602773	rs80080596	C	CTTA	907.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr4	15603069	rs1134634	G	C	764.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr4	15632228	rs3775956	A	G	1139.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr4	15640168	rs3182730	C	T	4852.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr4	15689632	rs11729955	G	A	1436.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr4	15690233	rs6449160	C	A	3176.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr4	15706466	rs3756247	T	C	3856.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:2,136:0.99:138
chr4	15706502	rs35181008	G	GTC	8699.73	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:2,202:0.99:204
chr4	15737882	rs4698413	C	T	3988.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr4	15739488	rs4283655	A	G	2033.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr4	15818391	rs3796868	G	A	1871.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr4	15849986	rs3796863	G	T	693.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr4	15937731	rs2072313	T	C	7365.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr4	15964485	rs758329	G	A	5383.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr4	15964573	rs758328	A	G	6166.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr4	15972905	rs11735976	T	C	1416.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr4	15977572	rs11734657	T	C	567.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	15981885	rs3841512	G	GA	1046.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:3,49:0.94:52
chr4	15981926	rs58036643	TA	T	967	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.236;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=8.076;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.727;QD=8.34;ReadPosRankSum=1.073;SOR=1.457;set=HC	GT:AD:AF:DP	0/1:27,89:0.77:116
chr4	15982163	rs34269395	A	AG	1184.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.260;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.40;MQRankSum=0.000;QD=21.54;ReadPosRankSum=0.383;SOR=0.887;set=HC	GT:AD:AF:DP	1/1:2,53:0.96:55
chr4	15982229	rs368346472	ATTTTTTT	A	361.73	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=36.17;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr4	15985984	rs3815344	G	C	3749.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr4	15986042	rs7675574	G	A	2245.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr4	15986113	rs7659341	T	C	802.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr4	15987509	.	T	TTTAAG	859.73	.	AC=2;AF=1.00;AN=2;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=50.57;SOR=5.784;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	15987512	.	T	TGCTTATTTAATCTGTATTAAATATTTAATACAGATAA	1516.73	.	AC=2;AF=1.00;AN=2;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=75.84;SOR=6.091;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr4	15989191	rs2191004	C	T	1963.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.543;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=19.07;ReadPosRankSum=0.310;SOR=0.675;set=HC	GT:AD:AF:DP	1/1:11,92:0.89:103
chr4	15989500	rs74892645	CT	C	80.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.450;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=1.663;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.37;ReadPosRankSum=0.107;SOR=1.096;set=HC	GT:AD:AF:DP	0/1:21,13:0.38:34
chr4	16002050	rs6449212	T	C	2012.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr4	16005061	rs6825026	T	C	11369.77	.	AC=2;AF=1.00;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	1/1:1,419:1.00:420
chr4	16024885	rs2013854	A	G	2745.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr4	16025837	rs17478336	C	T	2061.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr4	16037352	rs2078622	C	T	5332.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:2,200:0.99:202
chr4	16192413	rs7666361	C	T	1569.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr4	16227781	rs3749543	A	G	238.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr4	16227823	rs3749544	G	A	481.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr4	16228538	rs13136055	C	T	434.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	16510131	rs9993371	C	T	931.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr4	16597280	rs1506462	T	A	362.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	16675898	rs4698505	C	A	4040.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr4	16676046	rs7699941	A	C	521.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr4	16753863	rs283027	A	C	70.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr4	17489003	rs2597767	T	C	1573.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr4	17492145	rs731437	T	C	1067.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr4	17494054	rs2597772	A	G	1958.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr4	17503382	rs2597775	C	T	1712.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr4	17503544	rs2597776	C	T	1725.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr4	17511595	rs10020171	A	T	2113.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:2,80:0.98:82
chr4	17511634	rs10030250	G	A	866.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:1,37:0.97:38
chr4	17513458	rs2244804	A	G	3113.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr4	17513724	rs2244788	G	C	2515.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr4	17513757	rs67496406	CG	C	2405.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr4	17517099	rs1551091	A	G	3719.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr4	17517242	rs28382333	C	T	497.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	17581617	rs10939736	T	A	3342.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr4	17581643	rs35153429	CAG	C	3335.73	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr4	17583200	rs5856433	TAA	T	554.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr4	17586703	rs3733576	T	C	3087.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:2,121:0.98:123
chr4	17590671	rs17499929	G	A	3364.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr4	17590686	.	ATT	A,AT	903.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.435;ClippingRankSum=0.000;DP=97;ExcessHet=3.0103;FS=8.438;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.22;MQRankSum=0.601;QD=12.55;ReadPosRankSum=0.619;SOR=2.157;set=HC	GT:AD:AF:DP	1/2:10,18,44:0.25,0.61:72
chr4	17590734	rs11737120	A	T	1177.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr4	17599894	rs3775927	G	T	832.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr4	17608620	rs4698628	A	G	2176.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.91;SOR=0.791;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr4	17608884	rs4698629	C	G	1696.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr4	17625209	rs11733730	G	C	1595.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr4	17627294	rs2315552	A	G	3540.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr4	17627332	rs2315553	T	C	4793.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr4	17634213	rs6825562	A	G	4117.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr4	17634255	rs6847966	G	A	6170.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr4	17634256	rs142873186	C	CAA	6071.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr4	17635556	rs140729140	CAAAAT	C	1071.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr4	17636507	rs3214318	G	GT	345.76	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:2,20:0.91:22
chr4	17638302	rs148915854	T	TA	7553.73	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:2,207:0.99:209
chr4	17640858	rs6811887	C	T	5857.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr4	17643620	rs28501187	G	A	673.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr4	17643848	rs2286771	G	A	1786.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr4	17649233	rs3733577	T	G	1183.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr4	17649494	rs6813374	T	C	1307.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.33;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr4	17649499	rs6813375	T	G	1307.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.63;SOR=0.880;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr4	17654648	rs3815413	T	C	2167.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr4	17659936	rs10939742	G	T	2826.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:1,103:0.99:104
chr4	17660082	rs1860596	C	T	2924.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:1,111:0.99:112
chr4	17660237	rs2302391	T	C	195.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	17666303	rs113417391	G	GA	171.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.392;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.582;QD=2.82;ReadPosRankSum=-1.123;SOR=0.604;set=HC	GT:AD:AF:DP	0/1:43,18:0.30:61
chr4	17689901	rs11306510	AT	A	206.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.23;SOR=2.670;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	17689974	rs4698646	T	C	1125.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr4	17694880	rs6449324	G	C	2613.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr4	17694916	rs3822235	A	G	3798.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr4	17694943	rs3733579	A	G	5980.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr4	17707361	rs57570581	G	A	1841.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr4	17707627	rs62295656	C	A	1307.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr4	17711076	rs3733583	T	C	4255.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr4	17813711	rs1395371	T	C	231.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	17841465	rs2286537	A	G	1158.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr4	17841869	.	G	GT	162.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.007;ClippingRankSum=0.000;DP=99;ExcessHet=3.0103;FS=2.404;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.09;ReadPosRankSum=0.501;SOR=1.070;set=HC	GT:AD:AF:DP	0/1:57,21:0.27:78
chr4	17844029	rs17585261	G	A	4549.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr4	17875735	rs78581007	TCTC	T	14081.73	.	AC=2;AF=1.00;AN=2;DB;DP=332;MQ=60.13;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr4	17885296	rs377596412	AAC	A	851.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.76;SOR=3.098;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr4	20256722	rs1323066	G	A	2616.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr4	20270600	rs2196476	G	A	2039.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:1,76:0.99:77
chr4	20490710	rs543593	T	G	124.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.81;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr4	20492380	rs485909	A	G	2326.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr4	20520993	rs519813	T	C	1243.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr4	20526985	rs146437952	C	CAT	657.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	20530156	.	ATATC	A	457.73	.	AC=2;AF=1.00;AN=2;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	20533700	rs3215198	A	AT	1185.73	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr4	20535460	rs74466092	T	TTC	710.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	20541005	rs35993588	AG	A	4888.73	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr4	20541008	rs3842004	C	A	4897.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:2,113:0.98:115
chr4	20547838	rs2292439	C	T	718.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr4	20574776	rs187964279	G	A	2246.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr4	20706067	.	CT	C	53.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.235;ClippingRankSum=0.000;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.46;ReadPosRankSum=0.578;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:94,23:0.20:117
chr4	20709238	rs35495469	G	GA	853.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr4	20714642	rs3764964	T	G	725.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:2,26:0.93:28
chr4	20714924	rs12331966	A	G	2029.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr4	20715244	rs62410126	A	T	1296.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr4	20726537	rs10654905	C	CTT	628.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.80;QD=27.34;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	20733708	rs111474115	C	CA	2244.73	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr4	20734171	rs6812257	G	A	1835.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.89;SOR=2.191;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr4	20734176	rs6811933	C	G	1901.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.22;SOR=2.409;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr4	20736416	rs112956417	A	AAAAC	2286.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr4	20751278	rs2322688	A	G	1194.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr4	20760644	rs57740160	A	G	2181.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr4	20760683	rs17623902	A	G	1032.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr4	20852166	rs3765121	A	G	814.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr4	20852244	rs3765122	A	G	905.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr4	20884202	.	G	GA	97.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.831;ClippingRankSum=0.000;DP=120;ExcessHet=3.0103;FS=0.937;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.977;QD=0.86;ReadPosRankSum=-0.645;SOR=0.820;set=HC	GT:AD:AF:DP	0/1:92,22:0.19:114
chr4	20884482	rs57696441	G	GA	396.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr4	21305653	.	TGAGAGA	T	188.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.728;ClippingRankSum=-0.000;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.94;MQRankSum=0.967;QD=18.87;ReadPosRankSum=-0.728;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:2,8:0.80:10
chr4	21305694	.	GAGAGAGAGAGAGAGAC	G	256.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.776;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;FS=3.041;MLEAC=1;MLEAF=0.500;MQ=63.75;MQRankSum=1.854;QD=19.75;ReadPosRankSum=-0.965;SOR=0.116;set=HC	GT:AD:AF:DP	0/1:3,10:0.77:13
chr4	21764761	rs717531	C	T	6050.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr4	21950259	rs6448102	A	G	8043.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr4	22416133	rs7658234	C	G	867.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr4	22416195	rs13106386	C	G	2230.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr4	22439914	rs6823735	A	C	375.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr4	22444251	rs374500461	CA	C	66.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.823;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.76;ReadPosRankSum=0.719;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:67,21:0.24:88
chr4	22444692	rs10018144	C	T	2104.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr4	22457478	rs16872669	C	T	5301.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr4	22820504	rs358231	A	T	3361.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr4	23815294	rs34074379	G	C	2157.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:4,86:0.96:90
chr4	23886323	rs2946385	G	T	1750.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr4	24550431	rs35768649	T	A	1430.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr4	24801315	rs2536512	G	A	5867.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr4	24801949	rs2695232	C	T	181.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	24809884	rs1019229	T	C	856.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr4	25160732	rs34423002	T	TA	552.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.465;ClippingRankSum=0.000;DB;DP=203;ExcessHet=3.0103;FS=0.897;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.364;QD=3.79;ReadPosRankSum=0.373;SOR=0.529;set=HC	GT:AD:AF:DP	0/1:86,60:0.41:146
chr4	25262232	.	T	TTA	41.15	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.319;ClippingRankSum=-0.000;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.29;ReadPosRankSum=0.319;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr4	25315637	.	C	CTTT	1151.92	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.159;ClippingRankSum=0.000;DP=59;ExcessHet=3.0103;FS=1.559;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.73;ReadPosRankSum=1.980;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:11,42:0.79:53
chr4	25316815	rs12508686	T	C	975.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr4	25363901	rs315675	T	A	5366.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr4	25370962	rs315689	A	T	487.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	25382216	rs315676	C	G	300.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr4	25391584	rs186408	G	A	297.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr4	25393889	rs2292407	C	T	1750.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr4	25394078	rs2292408	A	G	928.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr4	25395674	rs17605267	C	A	817.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr4	25404553	rs10023139	C	T	1306.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr4	25408516	rs3214034	T	A	2091.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr4	25408724	rs28616687	A	G	345.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	25417244	rs3816587	C	T	592.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr4	25419283	rs9174	T	C	6494.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr4	25758580	rs4401441	G	A	3137.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr4	25769135	rs2290577	T	C	5120.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr4	26241366	rs200509512	G	GGGAGA	992.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.75;QD=43.16;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	26322759	rs113697915	C	A	806.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr4	26483208	rs17846984	C	T	2765.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr4	26483839	rs56270760	C	A	3254.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:2,119:0.98:121
chr4	26491111	rs1800857	A	G	6080.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.13;SOR=1.108;set=HC	GT:AD:AF:DP	1/1:0,141:1.00:141
chr4	26491117	rs1800855	A	T	5898.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.73;SOR=1.196;set=HC	GT:AD:AF:DP	1/1:0,129:1.00:129
chr4	26615982	rs260954	C	T	789.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr4	26673761	rs9997999	T	A	606.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.28;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr4	26673787	rs7691219	A	G	924.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr4	26721578	rs4590010	T	C	38.74	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr4	26737063	rs33992685	C	CT	497.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.185;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=2.716;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=16.06;ReadPosRankSum=1.279;SOR=0.132;set=HC	GT:AD:AF:DP	1/1:3,28:0.90:31
chr4	26862546	.	CTT	C,CT	1173.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.621;ClippingRankSum=0.000;DP=121;ExcessHet=3.0103;FS=1.169;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.18;MQRankSum=0.623;QD=10.87;ReadPosRankSum=0.199;SOR=0.797;set=HC	GT:AD:AF:DP	1/2:19,41,48:0.38,0.44:108
chr4	27000995	rs6822297	A	G	3234.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr4	27004011	rs10028164	G	A	716.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr4	27009062	.	CT	C	30.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.604;ClippingRankSum=0.000;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.18;ReadPosRankSum=-0.195;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:18,8:0.31:26
chr4	27022800	rs10031905	A	G	580.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr4	28821172	.	CT	C	55.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.356;ClippingRankSum=0.000;DP=228;ExcessHet=3.0103;FS=1.458;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.26;ReadPosRankSum=0.558;SOR=0.553;set=HC	GT:AD:AF:DP	0/1:179,37:0.17:216
chr4	30132766	rs72208450	ATGTGTG	A,ATG	3192.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=101;set=Intersection	GT:AF:DP	1/2:0.27,0.72:82
chr4	30222333	.	CAT	C	58.73	.	AC=1;AF=0.500;AN=2;DP=33;set=Intersection	GT:AD:AF:DP	0/1:25,5:0.17:30
chr4	30279724	rs200545568	C	T	1633.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr4	30279745	rs61794114	G	A	1803.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.75;QD=43.99;SOR=0.954;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr4	30279750	rs112269661	C	T	1696.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.35;QD=44.65;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr4	30279789	rs61794115	A	C	916.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.99;QD=43.66;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr4	30976765	.	T	TTG	267.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.141;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=2.884;MLEAC=1;MLEAF=0.500;MQ=60.46;MQRankSum=0.789;QD=14.09;ReadPosRankSum=0.759;SOR=0.160;set=HC	GT:AD:AF:DP	0/1:5,14:0.74:19
chr4	31116254	rs71190493	A	AACAC	107.19	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.150;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=6.021;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=26.80;ReadPosRankSum=1.150;SOR=2.788;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr4	36081878	rs4833069	C	T	8789.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,327:1.00:327
chr4	36109409	rs7688562	C	G	467.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;MQ=60.67;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	36121140	rs143366422	G	GT	135.86	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.623;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.32;ReadPosRankSum=1.111;SOR=1.863;set=HC	GT:AD:AF:DP	0/1:2,10:0.83:12
chr4	36122737	rs4832795	A	T	587.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr4	36126393	rs2271331	G	A	1638.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr4	36126696	rs3817165	G	A	659.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr4	36130099	.	T	TACACACACACAC,TACACACACACACAC,TACACACACAC	1169.73	.	AC=1,1,0;AF=0.500,0.500,0.00;AN=2;DP=24;set=Intersection	GT:AF:DP	1/2:0.55,0.45:20
chr4	36130127	rs5009416	T	C	2112.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr4	36130375	rs5857473	TA	T	1454.73	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:5,79:0.94:84
chr4	36130393	rs1397419	C	T	3373.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr4	36148837	rs73225587	T	C	2838.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr4	36149025	rs1567483	G	A	3209.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr4	36149113	rs1567484	C	T	2387.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr4	36160340	rs1546495	G	T	1965.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr4	36162273	rs11431961	C	CA	404.73	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:6,23:0.79:29
chr4	36162923	rs2271330	G	A	670.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	36168706	rs3055951	CAAAA	C	646.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	36211914	rs4394022	C	A	605.79	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr4	36258197	rs7686575	T	C	2101.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr4	36292018	rs1995319	T	A	3916.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr4	37243756	rs144889108	TA	T	668.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr4	37246639	rs892826	C	T	656.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr4	37247021	rs892825	C	T	689.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr4	37327583	rs73130327	A	C	4005.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:2,145:0.99:147
chr4	37432416	rs2973217	A	C	3438.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr4	37445885	rs11724784	T	C	4009.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:2,143:0.99:145
chr4	37590570	rs2279994	G	A	5612.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr4	37592128	rs2973275	G	A	5638.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr4	37592674	rs937941	T	C	873.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr4	37666995	rs1221653	T	C	5743.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr4	37828175	rs2059484	T	C	1076.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	37828186	rs2059483	C	T	1314.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr4	37831850	rs2911907	C	T	284.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr4	37848534	.	G	GT	73.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.920;ClippingRankSum=0.000;DP=97;ExcessHet=3.0103;FS=1.054;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.76;ReadPosRankSum=1.562;SOR=0.488;set=HC	GT:AD:AF:DP	0/1:80,17:0.18:97
chr4	37850312	rs35704131	TG	T	2353.73	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr4	37857106	rs6531590	G	A	525.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	37857166	rs6842360	A	G	1359.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr4	37863013	rs28402184	C	T	1616.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr4	37863045	rs3832307	AT	A	4059.73	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr4	38053788	.	CTG	C	90.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.386;ClippingRankSum=0.000;DP=78;ExcessHet=3.0103;FS=1.783;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=3.275;QD=1.78;ReadPosRankSum=1.110;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:41,10:0.20:51
chr4	38138856	rs13110318	G	A	707.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr4	38628540	rs168086	A	G	218.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr4	38628725	rs62294474	C	T	249.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	38698924	rs36023504	C	T	8326.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:2,311:0.99:313
chr4	38907021	.	T	TA	176.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.003;ClippingRankSum=0.000;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.59;MQRankSum=1.965;QD=3.68;ReadPosRankSum=0.549;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:31,17:0.35:48
chr4	38990334	rs3821986	C	T	1892.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr4	38995310	rs11721954	A	G	1545.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr4	38995374	rs10212770	T	C	4625.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr4	39000305	rs11542133	A	G	4025.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:2,152:0.99:154
chr4	39000569	rs73236699	C	T	912.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr4	39034066	rs56090217	TA	T	659.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.319;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=2.980;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.49;ReadPosRankSum=-0.208;SOR=0.174;set=HC	GT:AD:AF:DP	1/1:2,38:0.95:40
chr4	39034116	rs1430366	C	T	801.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.44;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr4	39034119	rs111780747	T	TAA	713.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.61;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	39046586	rs111344840	CA	C	690.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	39064126	rs2711942	G	C	1594.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr4	39064162	rs2711941	A	C	2834.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr4	39065091	rs2711940	G	A	643.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr4	39094798	.	G	A	4259.77	.	AC=2;AF=1.00;AN=2;DP=158;set=Intersection	GT:AD:AF:DP	1/1:4,153:0.97:157
chr4	39094954	rs2712007	G	C	4187.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:1,153:0.99:154
chr4	39109428	rs2711939	T	A	362.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	39186647	rs35185201	A	G	462.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	39187522	rs6839511	G	T	1212.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.707;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=3.677;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.94;ReadPosRankSum=-0.428;SOR=0.333;set=HC	GT:AD:AF:DP	0/1:24,63:0.72:87
chr4	39196407	rs35702826	C	T	1912.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr4	39205365	rs1451817	C	T	7733.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr4	39226486	.	AT	A	188.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.425;ClippingRankSum=0.000;DP=39;ExcessHet=3.0103;FS=1.550;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.10;ReadPosRankSum=-0.066;SOR=0.352;set=HC	GT:AD:AF:DP	0/1:17,20:0.54:37
chr4	39242111	rs9998591	C	A	491.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	39255496	rs33997556	A	G	2842.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr4	39276623	rs11096989	A	AG	2205.73	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr4	39279724	rs12648082	T	C	3587.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr4	39301605	rs2066788	G	C	1520.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr4	39303925	rs2066782	A	G	4826.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr4	39314248	rs41554013	G	A	820.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr4	39329102	rs11096992	G	A	1268.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr4	39353122	rs4975007	C	T	450.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr4	39368083	rs3736168	C	T	879.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr4	39409416	rs900563	C	A	2408.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr4	39448542	rs7685429	C	G	8932.77	.	AC=2;AF=1.00;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	1/1:0,332:1.00:332
chr4	39456635	rs10025155	T	C	1449.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr4	39457857	rs1015450	T	C	1330.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.31;SOR=1.251;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr4	39457870	rs3216720	T	TG	2117.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr4	39458051	rs2125313	A	G	2703.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr4	39459724	rs2687958	T	C	3033.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr4	39460352	rs11550000	C	G	2077.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr4	39469416	rs9990499	C	G	1687.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:1,61:0.98:62
chr4	39474868	rs749915	G	A	4230.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:2,162:0.99:164
chr4	39478832	rs1048140	G	A	2093.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr4	39505927	.	C	CA	81.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.498;ClippingRankSum=0.000;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.73;MQRankSum=0.000;QD=1.01;ReadPosRankSum=0.070;SOR=0.825;set=HC	GT:AD:AF:DP	0/1:64,17:0.21:81
chr4	39507524	rs11290546	TA	T	344.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.629;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.85;ReadPosRankSum=0.578;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:6,29:0.83:35
chr4	39510329	rs56242282	C	T	3707.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr4	39511530	rs71645104	T	TA	1532.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.312;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=4.138;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.000;QD=13.69;ReadPosRankSum=0.767;SOR=1.420;set=HC	GT:AD:AF:DP	0/1:21,91:0.81:112
chr4	39528752	rs4975020	G	A	1470.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.74;SOR=1.159;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr4	39700173	rs1055582	C	T	573.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr4	39747536	rs302931	A	G	282.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	39757480	rs11389468	A	AT	1640.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr4	39827204	rs200023345	CT	C	84.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.720;ClippingRankSum=-0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.36;MQRankSum=0.629;QD=4.98;ReadPosRankSum=0.094;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:8,9:0.53:17
chr4	39827804	rs34109809	GT	G	676.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.160;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=4.276;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=0.842;QD=8.68;ReadPosRankSum=0.218;SOR=0.762;set=HC	GT:AD:AF:DP	0/1:20,58:0.74:78
chr4	39847505	.	TA	T	60.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.253;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=5.815;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.64;ReadPosRankSum=-0.703;SOR=0.072;set=HC	GT:AD:AF:DP	0/1:15,8:0.35:23
chr4	39851058	rs10664738	C	CAAA	612.75	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.491;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=1.983;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.69;ReadPosRankSum=0.380;SOR=0.330;set=HC	GT:AD:AF:DP	1/1:6,21:0.78:27
chr4	39878849	.	G	GA	115	.	AC=1;AF=0.500;AN=2;BRF=0.19;FR=0.5000;HP=14;HapScore=3;MGOF=15;MMLQ=24;MQ=60.33;NF=0;NR=7;PP=115;QD=18.1428571429;SC=TCCCGCAAAAGAAAAAAAAAA;SbPval=1.0;Source=Platypus;TC=30;TCF=0;TCR=30;TR=7;WE=39878857;WS=39878839;set=Platypus	GT:AD:AF:DP	1/0:23,7:0.23:30
chr4	39891783	.	T	G	120.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.270;ClippingRankSum=0.000;DP=27;ExcessHet=3.0103;FS=17.975;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.47;ReadPosRankSum=2.460;SOR=4.615;set=HC	GT:AD:AF:DP	0/1:13,14:0.52:27
chr4	39900527	rs114242206	G	A	835.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr4	39910172	rs35396203	GA	G	1915.73	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:1,87:0.99:88
chr4	39918635	rs71194939	T	TA	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.280;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.07;ReadPosRankSum=0.842;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:30,9:0.23:39
chr4	39921942	rs28449663	A	G	1139.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr4	39924372	.	T	TAA	145.50	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.556;ClippingRankSum=0.000;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=13.23;ReadPosRankSum=-0.794;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:1,10:0.91:11
chr4	39928379	.	G	GT	58.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.443;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=3.982;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.55;ReadPosRankSum=1.294;SOR=1.668;set=HC	GT:AD:AF:DP	0/1:15,8:0.35:23
chr4	39929853	rs149442914	TA	T	454	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:4,31:0.89:35
chr4	40045093	rs17511578	C	A	5295.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr4	40045727	rs1704151	T	G	2257.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr4	40103817	rs61748746	G	A	2486.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr4	40121562	rs794001	G	A	905.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr4	40123790	rs61748749	T	G	6140.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr4	40350763	rs10029872	T	C	1146.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr4	40356422	rs10009228	A	G	3580.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr4	40427990	rs2292039	G	C	1720.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr4	40428010	rs278981	T	C	1958.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr4	40438576	rs2307046	A	G	6869.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr4	40438957	rs56769284	CG	C	1139.73	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:2,45:0.96:47
chr4	40438961	.	A	C	1077.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.311;ClippingRankSum=0.000;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.59;MQRankSum=0.578;QD=22.45;ReadPosRankSum=-0.765;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:4,44:0.92:48
chr4	40440215	rs2291580	T	C	11922.77	.	AC=2;AF=1.00;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	1/1:0,431:1.00:431
chr4	40440854	rs1052153	G	C	6324.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr4	40778146	rs2465570	C	T	2170.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr4	40778162	rs2437323	T	G	2023.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr4	40788544	rs2953325	A	G	1243.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr4	40810747	rs2261167	A	G	7878.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr4	40810978	rs882733	G	A	4946.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr4	40832363	rs2437343	C	T	792.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr4	40844199	rs1865605	T	C	4031.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr4	41035354	rs116293599	C	T	828.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr4	41526250	rs10014221	G	A	1184.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr4	41526503	rs4266323	C	T	7623.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:1,282:1.00:283
chr4	41607754	rs11943304	T	C	681.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	41611575	rs1105886	A	G	4327.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr4	41615249	rs66955637	A	AT	629.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr4	41615690	rs13146318	T	A	3255.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr4	41629036	rs5857808	G	GGTGT	849.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.509;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=0.487;QD=40.46;ReadPosRankSum=-1.622;SOR=1.101;set=HC	GT:AD:AF:DP	0/1:2,19:0.90:21
chr4	41748511	rs2196822	T	G	707.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr4	41749265	rs28647582	T	C	831.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr4	41749668	rs6811325	C	T	6280.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr4	42020142	rs2581423	A	G	1539.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr4	42025207	rs3213767	A	G	986.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr4	42025284	rs4861153	A	G	3394.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr4	42402992	rs66671329	A	G	1833.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr4	42403561	rs55934419	T	C	1348.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr4	42466641	rs12647640	C	T	460.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	42557859	rs145505019	C	CTAAA	208.80	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr4	42571074	rs6845603	A	T	1346.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.28;SOR=1.931;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr4	42577517	rs2290868	A	G	809.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr4	42582047	rs6447171	A	C	757.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr4	42592935	rs3833615	C	CA	1043.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.157;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.10;ReadPosRankSum=-0.009;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:11,63:0.85:74
chr4	42602606	rs6819419	A	C	775.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr4	42626659	rs11306052	GA	G	344.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.287;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=0.546;QD=11.49;ReadPosRankSum=0.483;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:4,26:0.87:30
chr4	42627805	rs1460358	A	C	1007.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr4	44626641	rs60959366	A	G	907.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr4	44626806	rs17600797	C	A	4750.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr4	44626846	rs6838327	G	A	4548.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr4	44631587	rs6813809	A	G	1964.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr4	44651968	.	C	CA	32.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.963;ClippingRankSum=-0.000;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.34;ReadPosRankSum=0.449;SOR=0.458;set=HC	GT:AD:AF:DP	0/1:9,5:0.36:14
chr4	44684455	rs13117025	C	T	1233.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr4	44684507	rs9291245	C	T	414.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr4	44685224	rs112232487	T	TA	1267.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=67.35;QD=50.71;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr4	44685225	rs58659516	T	A	1276.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=66.38;QD=44.03;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr4	44685236	.	A	AT	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.487;ClippingRankSum=0.000;DP=37;ExcessHet=3.0103;FS=1.643;MLEAC=1;MLEAF=0.500;MQ=65.06;MQRankSum=-3.397;QD=1.05;ReadPosRankSum=0.544;SOR=1.093;set=HC	GT:AD:AF:DP	0/1:28,8:0.22:36
chr4	44691795	rs11373408	T	TA	1617.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.644;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.661;QD=11.00;ReadPosRankSum=-1.109;SOR=0.764;set=HC	GT:AD:AF:DP	0/1:42,105:0.71:147
chr4	44696538	rs12641137	C	G	1171.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr4	44709695	rs1491302	C	T	938.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr4	46042945	rs6447493	C	T	1108.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr4	46066356	rs6838525	C	T	279.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr4	46086060	rs976156	T	C	1529.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr4	46314593	rs279858	T	C	2663.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr4	46334702	rs279827	A	G	1313.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:2,52:0.96:54
chr4	46334810	rs279828	A	C	349.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	46967279	rs2055943	C	A	5537.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:1,198:0.99:199
chr4	46994972	rs34464680	G	GA	1729.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.461;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=16.02;ReadPosRankSum=-0.099;SOR=0.651;set=HC	GT:AD:AF:DP	1/1:12,96:0.89:108
chr4	46995366	rs2229940	G	T	4252.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr4	47033768	.	TCTCG	T	100.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.306;ClippingRankSum=0.000;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.79;ReadPosRankSum=1.593;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:112,16:0.12:128
chr4	47033770	rs72416056	TCG	T	2348.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:28,85:0.75:113
chr4	47034075	rs45460902	G	A	3873.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.68;SOR=1.028;set=HC	GT:AD:AF:DP	1/1:0,115:1.00:115
chr4	47034104	rs6847977	G	A	2011.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.72;SOR=0.883;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr4	47034136	rs77472678	A	C	953.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.42;SOR=1.230;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr4	47034144	.	G	GACAC,GAC	310.73	.	AC=1,0;AF=0.500,0.00;ALERT;AN=2;DP=21;set=Intersection	GT:AF:DP	0/1:0.78:9
chr4	47034145	rs73247629	G	A	961.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=48.09;SOR=1.127;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr4	47034626	rs41309288	C	G	6941.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr4	47322190	rs4482737	T	C	5028.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr4	47322219	rs6284	C	A	5376.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:2,203:0.99:205
chr4	47514685	rs33995001	C	T	5237.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr4	47524961	rs12509973	T	A	1230.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.62;SOR=2.147;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr4	47525009	rs5858076	T	A	2714.73	.	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.88;SOR=1.734;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chr4	47538044	rs35012290	G	A	3759.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr4	47560163	rs11729411	C	A	7260.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:2,277:0.99:279
chr4	47562802	rs34470690	G	GC	1115.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr4	47679832	.	A	G	1690.77	.	AC=2;AF=1.00;AN=2;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr4	47746602	rs372683178	TA	T	69.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.210;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=7.923;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.07;ReadPosRankSum=-1.359;SOR=1.765;set=HC	GT:AD:AF:DP	0/1:48,17:0.26:65
chr4	47839929	rs2289433	C	T	1703.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr4	47853843	rs6822668	T	C	4097.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:2,150:0.99:152
chr4	47857040	rs7690499	T	C	591.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	47880987	rs59766953	G	A	573.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:1,21:0.95:22
chr4	47887536	rs2053404	T	C	8391.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:1,317:1.00:318
chr4	47887991	rs6818556	G	A	3853.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr4	47888137	rs11940441	T	A	445.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	47898491	rs6447592	C	T	1925.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr4	47901315	rs59694214	AT	A	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.231;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=3.103;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.62;ReadPosRankSum=1.075;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:43,11:0.20:54
chr4	47905158	rs2119204	A	G	2089.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr4	47913127	rs4695306	C	T	276.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	47916346	rs6826122	C	G	342.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	47938879	rs17573673	G	A	11426.77	.	AC=2;AF=1.00;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	1/1:0,412:1.00:412
chr4	47944029	rs10709670	CA	C	755.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.617;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=0.817;QD=7.63;ReadPosRankSum=-0.711;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:34,65:0.66:99
chr4	47945455	rs6819506	C	G	461.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	47951945	rs1972883	G	A	7041.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr4	47953515	rs3845160	A	T	1634.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr4	47973110	rs7693648	G	A	711.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr4	47973234	rs7677851	T	G	196.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	48018761	rs77335151	A	G	440.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	48073501	rs906486	G	T	5590.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr4	48078593	rs6850108	C	A	4263.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr4	48081896	rs11358014	CA	C	1788.73	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:10,105:0.91:115
chr4	48082208	rs2352590	T	C	2567.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr4	48088446	rs6858664	A	G	4364.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr4	48139306	rs3062021	ATTAT	A	2944.73	.	AC=2;AF=1.00;AN=2;DB;DP=69;MQ=60.31;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr4	48139565	rs2661529	C	A	4177.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr4	48147612	rs2661547	T	G	2937.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr4	48158524	rs882715	G	A	708.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	48165834	rs13104849	T	C	1781.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr4	48165835	rs139629025	T	TGAAA	1772.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr4	48165888	rs139950746	CTTA	C	547.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	48169769	rs7689953	A	G	8937.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:0,330:1.00:330
chr4	48170669	rs2243840	A	G	1610.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr4	48172218	rs2271174	C	T	1349.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr4	48172266	rs2271173	G	A	1710.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr4	48173547	rs7669393	A	G	1369.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr4	48177954	rs7696271	A	G	1365.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:2,45:0.96:47
chr4	48178003	rs11282767	A	AAATCAGCC	4898.73	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:1,106:0.99:107
chr4	48178064	rs45598338	C	A	7076.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:1,267:1.00:268
chr4	48372085	rs1466631	T	G	1042.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr4	48384499	rs6816010	T	C	2324.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr4	48396496	rs4694894	C	A	899.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr4	48492213	rs10031120	C	T	563.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr4	48492434	rs10008444	G	C	2737.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr4	48516970	rs7434721	C	T	735.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr4	48517352	rs7661515	C	A	582.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr4	48529683	rs11356838	TA	T	615.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.752;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=0.679;QD=9.19;ReadPosRankSum=-1.597;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:15,52:0.78:67
chr4	48529733	rs4695385	G	A	1209.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr4	48537603	.	TAC	T	180.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.239;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;FS=9.025;MLEAC=1;MLEAF=0.500;MQ=60.75;MQRankSum=2.327;QD=4.63;ReadPosRankSum=-0.081;SOR=0.061;set=HC	GT:AD:AF:DP	0/1:28,11:0.28:39
chr4	48547041	rs952289	A	C	2194.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:1,72:0.99:73
chr4	48558882	rs4694898	C	T	1201.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:1,37:0.97:38
chr4	48565101	rs13138269	A	T	425.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr4	48577121	rs28558226	C	T	7087.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr4	48582836	rs4695390	A	T	3578.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr4	48583061	.	AT	A	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.113;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.76;ReadPosRankSum=0.509;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:14,8:0.36:22
chr4	48588742	rs34558821	C	T	4963.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:1,187:0.99:188
chr4	48607938	rs2940319	T	C	515.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	48611149	rs2354348	A	G	689.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.57;SOR=2.179;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	48611153	rs776603	A	T	639.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.65;SOR=2.448;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	48611639	rs5858122	G	GA	567.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.489;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.34;MQRankSum=0.387;QD=17.74;ReadPosRankSum=-1.169;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:2,30:0.94:32
chr4	48625213	rs776579	C	A	730.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.900;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=21.49;ReadPosRankSum=-1.142;SOR=0.957;set=HC	GT:AD:AF:DP	1/1:2,32:0.94:34
chr4	48655635	rs776580	T	A	1943.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr4	48655824	rs141132438	AAGCAGC	A	837.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr4	48851937	rs3761729	C	T	2984.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:2,105:0.98:107
chr4	52709962	.	C	CG	53.70	.	AC=2;AF=1.00;AN=2;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.85;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr4	52709970	.	T	TG	53.70	.	AC=2;AF=1.00;AN=2;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.85;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr4	52714354	rs10673605	A	ATTTC	3199.73	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr4	52714511	rs6851073	C	G	2051.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr4	52744145	rs3215145	T	TAGAC	502.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	52752812	rs2271046	A	T	1547.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr4	52753118	rs7665231	G	A	560.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	52753273	.	C	CT	138.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.469;ClippingRankSum=0.000;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.813;QD=1.51;ReadPosRankSum=-2.050;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:71,21:0.23:92
chr4	52765720	rs2271045	T	G	915.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr4	52928352	rs34989037	GT	G	479.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.420;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=1.640;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.41;ReadPosRankSum=0.102;SOR=1.410;set=HC	GT:AD:AF:DP	0/1:10,41:0.80:51
chr4	52945799	rs7689145	C	T	1100.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr4	52946161	rs7657148	A	G	1722.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr4	52951213	rs147423128	CTT	C	1642.73	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:7,61:0.90:68
chr4	53822307	rs301093	A	G	9583.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	1/1:0,347:1.00:347
chr4	54011526	rs7675987	A	G	8136.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr4	54245476	rs1471596	A	T	69.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.09;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr4	54250189	rs10012853	T	G	330.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	54255950	.	G	GT	1067.73	.	AC=2;AF=1.00;AN=2;DP=51;set=Intersection	GT:AD:AF:DP	1/1:2,49:0.96:51
chr4	54280705	rs10719406	GA	G	447.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.953;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=6.432;MLEAC=1;MLEAF=0.500;MQ=60.48;MQRankSum=0.913;QD=10.18;ReadPosRankSum=0.947;SOR=2.044;set=HC	GT:AD:AF:DP	0/1:12,32:0.73:44
chr4	54310188	rs11722866	A	G	1581.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr4	54310281	rs11723755	T	G	2325.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr4	54310340	rs59279367	TA	T	1196.73	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr4	54325444	rs34707349	C	CT	180.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.961;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=2.392;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.22;ReadPosRankSum=0.822;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:8,14:0.64:22
chr4	54327211	rs60909872	T	TA	163.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.112;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=9.402;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.86;ReadPosRankSum=2.408;SOR=0.178;set=HC	GT:AD:AF:DP	0/1:68,20:0.23:88
chr4	54327235	rs3811785	T	C	2414.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr4	54327584	rs3765158	A	G	2515.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr4	54362150	rs6836800	G	A	698.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr4	54852693	rs200724553	CTTTTATTTTATTTTA	CTTTTA,C	1107.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=28;set=Intersection	GT:AF:DP	1/1:1.00:26
chr4	54876121	rs145864126	T	TA	75.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.799;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=1.450;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.08;ReadPosRankSum=0.017;SOR=1.148;set=HC	GT:AD:AF:DP	0/1:54,16:0.23:70
chr4	54876132	rs4437313	C	A	1166.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.436;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=2.496;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.35;ReadPosRankSum=-1.498;SOR=0.417;set=HC	GT:AD:AF:DP	0/1:18,58:0.76:76
chr4	54930269	rs139920029	CAG	C	2802.73	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr4	54966667	rs3194383	C	T	12737.77	.	AC=2;AF=1.00;AN=2;DB;DP=470;set=Intersection	GT:AD:AF:DP	1/1:0,462:1.00:462
chr4	54966830	rs13144341	G	A	6081.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr4	54966919	rs1132998	T	C	7793.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr4	54967214	rs6554148	C	T	1800.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr4	54967709	rs2278142	C	A	1991.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr4	55130078	rs2229307	T	C	4043.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:1,160:0.99:161
chr4	55130154	rs2307049	G	A	1285.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.57;SOR=1.559;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr4	55131001	rs71823029	TA	T	411.86	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.517;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=4.060;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.10;ReadPosRankSum=-1.246;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:18,40:0.69:58
chr4	55133726	rs4358459	T	G	7836.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chr4	55133783	rs142498442	C	T	5639.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr4	55133936	rs28489067	C	T	696.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:3,32:0.91:35
chr4	55133959	rs28650939	C	T	1036.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	55139771	rs35597368	T	C	4537.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr4	55141055	rs1873778	A	G	8119.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr4	55143577	rs10028020	G	A	3029.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr4	55146406	rs6148442	T	TTGTAGGTCCCCCAG	1300.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr4	55146754	rs1547905	C	A	1184.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr4	55151711	rs2412559	C	A	6136.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr4	55152040	rs2228230	C	T	4743.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:4,179:0.98:183
chr4	55153837	rs7695657	A	G	1615.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr4	55154891	rs55732997	T	C	3427.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr4	55156380	rs4864506	G	A	1362.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr4	55161391	rs7685117	T	C	3984.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr4	55599436	rs1008658	T	C	2484.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr4	55946081	rs4421048	A	G	906.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr4	55948108	rs2412617	A	G	2899.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr4	55980239	rs7692791	C	T	3708.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr4	56235931	rs819268	C	G	1506.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr4	56262374	rs1128141	A	G	4785.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr4	56309992	rs3736544	A	G	1931.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr4	56314761	.	A	ACGCG	98.25	.	AC=2;AF=1.00;AN=2;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=70.00;QD=32.75;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr4	56314768	.	C	CGCGCGTGTGT	1263	.	AC=2;AF=1.00;AN=2;BRF=0.4;FR=1.0000;HP=2;HapScore=1;MGOF=4;MMLQ=22;MQ=61.69;NF=9;NR=1;PP=1263;QD=126.6;SC=CGCACGCGCGCGTGTGTGTGT;SbPval=0.61;Source=Platypus;TC=11;TCF=10;TCR=1;TR=10;WE=56314776;WS=56314758;set=Platypus	GT:AD:AF:DP	1/1:1,10:0.91:11
chr4	56319105	rs2412647	C	T	169.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr4	56319350	rs11240	C	G	2932.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr4	56322244	rs10529254	TG	T	482.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.607;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.99;ReadPosRankSum=0.413;SOR=0.420;set=HC	GT:AD:AF:DP	1/1:1,20:0.95:21
chr4	56458103	rs34299771	A	T	2983.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:1,110:0.99:111
chr4	56458400	rs62310884	A	C	2257.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr4	56465418	rs1387198	T	C	2707.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr4	56471404	rs1873090	C	T	1781.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:1,64:0.98:65
chr4	56471433	rs1873091	A	G	3432.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:1,123:0.99:124
chr4	56473359	rs2412666	T	C	717.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr4	56475338	rs3805383	G	A	7420.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr4	56475447	rs17725163	T	C	4136.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr4	56502178	rs3792703	G	A	578.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	56739013	.	G	GT	142.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.399;ClippingRankSum=0.000;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.59;ReadPosRankSum=2.617;SOR=0.581;set=HC	GT:AD:AF:DP	0/1:69,21:0.23:90
chr4	56763170	rs10014018	A	G	393.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr4	56832173	rs71601610	C	T	695.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr4	56835114	rs2593086	G	T	200.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	56835413	rs1811473	C	T	298.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr4	57176710	rs13123803	G	A	539.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	57176955	.	T	TC	1899	.	AC=2;AF=1.00;AN=2;BRF=0.43;FR=1.0000;HP=9;HapScore=1;MGOF=21;MMLQ=15;MQ=59.15;NF=1;NR=75;PP=1899;QD=25.1710526316;SC=ACTTTCATCTTCCCCCCCCCT;SbPval=0.99;Source=Platypus;TC=104;TCF=7;TCR=97;TR=76;WE=57176974;WS=57176945;set=Platypus	GT:AD:AF:DP	1/1:28,76:0.73:104
chr4	57176964	rs371414283	CT	C	844.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.319;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.57;ReadPosRankSum=0.140;SOR=3.258;set=HC	GT:AD:AF:DP	0/1:16,57:0.78:73
chr4	57176966	rs60121364	T	C	745.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.960;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=14.500;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.08;ReadPosRankSum=2.459;SOR=4.339;set=HC	GT:AD:AF:DP	0/1:25,49:0.66:74
chr4	57180473	rs6823339	C	A	1982.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr4	57180576	rs138358443	C	CGGAGCGGAGGGAGCGGAG	947.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	57180616	rs11723379	G	C	539.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr4	57181632	rs7672073	G	C	8297.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr4	57189498	rs2292985	G	A	1070.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr4	57190356	rs7695701	G	A	5388.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr4	57193762	rs6826795	G	A	797.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr4	57194329	rs11733474	G	T	777.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr4	57194460	rs6811153	A	G	5416.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr4	57194525	rs6834736	C	G	7377.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr4	57208955	rs9996468	A	T	820.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.30;SOR=1.688;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr4	57215677	rs3796544	G	A	11017.77	.	AC=2;AF=1.00;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	1/1:1,411:1.00:412
chr4	57217340	rs7694439	T	C	72.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr4	57219523	rs6554347	A	G	969.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr4	57219592	rs6554348	G	A	2145.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr4	57237683	rs6554354	G	A	6804.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:2,264:0.99:266
chr4	57261614	.	C	A	5201.77	.	AC=2;AF=1.00;AN=2;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr4	57269363	rs35136233	TA	T	6565.73	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr4	57269591	rs34121369	T	TA	4254.73	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr4	57269646	rs112538106	A	AAAAG	2744.73	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr4	57270197	rs7661712	T	C	848.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr4	57273840	rs11538098	C	G	11807.77	.	AC=2;AF=1.00;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	1/1:0,454:1.00:454
chr4	57276619	rs2139512	G	C	92.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr4	57276739	rs2176785	G	C	957.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr4	57415157	.	C	CT	93.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.053;ClippingRankSum=0.000;DP=74;ExcessHet=3.0103;FS=3.185;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.08;ReadPosRankSum=0.000;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:32,13:0.29:45
chr4	57425443	rs7677956	G	A	189.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	57425469	rs369698463	CA	C	48.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.210;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.87;ReadPosRankSum=0.549;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:3,7:0.70:10
chr4	57425520	rs76480778	A	AT	1460.73	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:5,69:0.93:74
chr4	57458942	rs6858341	C	G	378.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr4	57686807	.	G	GT	113.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.370;ClippingRankSum=0.000;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.03;ReadPosRankSum=-1.083;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:41,15:0.27:56
chr4	57785786	rs10866440	A	T	262.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr4	57793751	rs1105434	G	A	1699.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr4	57843320	rs4865167	A	G	4069.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr4	57845269	rs13133792	G	T	652.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr4	57861046	rs7659855	A	G	641.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.43;QD=26.74;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr4	57861096	rs145225188	GAA	G	219.80	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.19;QD=36.63;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr4	57861117	rs1713951	G	A	227.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr4	57861358	rs2293175	C	T	518.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	57871748	rs71657247	C	CT	1245.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.692;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=4.520;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.58;ReadPosRankSum=0.039;SOR=1.220;set=HC	GT:AD:AF:DP	0/1:28,71:0.72:99
chr4	57876955	rs1718878	G	A	741.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr4	57881715	rs1713982	G	A	1993.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr4	57883175	rs1718866	G	C	1224.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr4	57886914	rs17087382	A	G	823.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr4	57886946	rs1718831	T	G	1153.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr4	57888510	rs1718830	T	C	2537.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr4	57889332	rs1718862	G	A	543.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	57891239	rs6843644	G	A	348.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	57897508	.	TA	T	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.743;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.59;ReadPosRankSum=0.742;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:50,14:0.22:64
chr4	57897570	rs12621	G	T	1050.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:1,42:0.98:43
chr4	57906986	rs3755906	A	T	1926.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr4	62382943	rs335311	A	G	949.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr4	62383315	rs335312	G	C	561.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr4	62542879	rs1391319	G	C	347.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	62775483	rs12648576	G	A	598.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.03;SOR=4.892;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	62800554	rs2305339	G	A	2169.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr4	62800728	rs734644	T	C	1226.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr4	62845388	rs1397547	G	C	4342.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr4	62845490	rs1397548	A	G	7709.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:2,302:0.99:304
chr4	65142710	rs1483713	C	T	974.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.35;SOR=0.984;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr4	65142835	rs1483712	G	T	607.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	65145955	rs1483711	T	G	662.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	65145966	rs5858871	T	TAA	572.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr4	65146700	rs10012755	A	G	1338.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr4	65146711	rs1483709	T	C	1498.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr4	65147404	rs10001161	T	C	287.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	65165661	rs11935568	G	A	1230.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr4	65165849	rs13139627	G	A	736.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr4	65180308	rs35642943	GGTGTGTGTGTGTGT	GGT,G	1721.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=63;set=Intersection	GT:AF:DP	1/1:1.00:42
chr4	65240805	rs6551827	A	T	119.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr4	66214043	rs2290254	G	A	983.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr4	66218728	rs3792649	C	T	2810.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr4	66218917	rs139336386	G	GTA,GTATA	456.73	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=45;set=Intersection	GT:AF:DP	0/1:0.76:25
chr4	66286088	rs6551921	G	A	661.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.08;SOR=4.804;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr4	66286100	rs6551922	T	C	880.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.41;SOR=2.694;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr4	66286414	rs6551923	T	C	324.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr4	66468046	rs5858973	TA	T	832.73	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr4	66509194	rs4343775	T	C	2853.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr4	68357814	rs1497430	A	G	251.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	68358331	rs2254659	G	A	39.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.87;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr4	68360694	rs2632453	T	C	120.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr4	68360955	rs2646282	A	G	1965.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr4	68374597	rs1056789	C	T	3311.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr4	68376708	rs190255	T	C	3229.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr4	68380215	rs11250	G	A	2430.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr4	68384008	rs355510	C	T	155.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.68;QD=22.26;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	68384861	rs355507	G	T	102.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.58;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr4	68396525	rs355477	G	C	1807.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr4	68416393	rs11436062	T	TA	443.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.439;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.82;ReadPosRankSum=-0.782;SOR=1.027;set=HC	GT:AD:AF:DP	0/1:10,31:0.76:41
chr4	68416639	.	GTTGTTTTGTTTTGTT	G	1873	.	AC=2;AF=1.00;AN=2;BRF=0.26;FR=1.0000;HP=2;HapScore=1;MGOF=3;MMLQ=21;MQ=61.78;NF=0;NR=7;PP=1873;QD=268.857142857;SC=AAAAGTAAGAGTTGTTTTGTT;SbPval=1.0;Source=Platypus;TC=20;TCF=1;TCR=19;TR=7;WE=68416661;WS=68416629;set=Platypus	GT:AD:AF:DP	1/1:13,7:0.35:20
chr4	68424355	rs371543914	AGT	A	153.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.057;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=1.358;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.08;ReadPosRankSum=-0.503;SOR=0.403;set=HC	GT:AD:AF:DP	0/1:62,12:0.16:74
chr4	68424378	rs144504386	CTG	C	69.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.910;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=1.406;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.70;ReadPosRankSum=-1.224;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:88,11:0.11:99
chr4	68436883	rs13111555	T	C	1824.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr4	68442968	rs11556614	A	G	1857.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr4	68447040	rs11556615	C	T	2761.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr4	68490019	rs10454253	C	T	1869.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr4	68490044	rs10454252	C	T	1457.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr4	68490097	rs4860854	T	G	634.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr4	68490650	rs12508337	G	A	989.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:1,35:0.97:36
chr4	68492060	rs34742870	A	G	1184.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr4	68492244	rs35602179	T	TAA	907.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr4	68492301	rs12506872	A	T	174.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr4	68496080	rs354866	G	A	1207.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr4	68497333	rs4146407	G	A	136.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr4	68514739	rs3849642	T	C	3858.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr4	68531131	rs35765874	G	GT	337.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.282;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=5.229;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=33.78;ReadPosRankSum=1.645;SOR=1.996;set=HC	GT:AD:AF:DP	1/1:1,9:0.90:10
chr4	68539539	rs112890671	AT	A	460.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr4	68543240	rs17571825	C	T	987.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr4	68544318	rs28483797	C	T	771.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr4	68547165	rs11394457	T	TA	92.87	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr4	68547809	rs34482936	A	ATAC	3220.73	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr4	68562176	rs10660788	T	TACAC	502.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	68562236	rs10573467	TAC	T	1044.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr4	68562365	rs17572160	A	G	1679.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr4	68566878	rs377196781	A	AG	5423.73	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr4	68566891	rs34378415	TG	T	4994.73	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr4	68586231	rs149673034	C	T	4250.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:3,160:0.98:163
chr4	68586315	rs13124793	G	A	1236.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr4	68586335	rs72643632	TA	CG	1206.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr4	68700956	rs6824984	A	G	722.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr4	68812283	rs11930532	C	T	4267.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr4	68812444	rs34591422	T	TAA	299.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.036;ClippingRankSum=-0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=21.41;ReadPosRankSum=1.645;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:1,13:0.93:14
chr4	68829207	rs6552134	G	A	2536.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr4	68904637	rs6552141	A	C	4047.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.11;QD=28.91;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,140:1.00:140
chr4	68904834	rs9999589	T	G	2475.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr4	68919617	rs10018943	G	A	2947.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr4	68928740	rs1837215	G	A	3494.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:2,127:0.98:129
chr4	68934306	rs10004522	G	A	818.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.24;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr4	68956422	rs57121360	T	A	2276.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr4	68956498	rs13115830	C	T	1054.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr4	69094575	rs2319796	T	G	1444.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr4	69097150	rs5859125	TA	T	1150.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr4	69098006	rs6552175	C	T	281.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr4	69100137	rs35624784	G	GA	1484.73	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr4	69528594	rs116368924	T	G	119.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.50;QD=19.97;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr4	69964180	rs7439326	T	C	1881.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr4	69964209	rs7438244	A	G	2833.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr4	69964234	rs34182209	C	CT	2669.73	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:9,129:0.93:138
chr4	69964337	rs7438284	AT	TC	10690.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;JOINED;set=Intersection	GT:AD:AF:DP	1/1:2,243:0.99:245
chr4	69972777	rs5013211	G	A	962.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr4	69972949	rs4292394	C	G	2467.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:2,92:0.98:94
chr4	69978554	rs57075995	C	CA	210.25	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.651;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=2.605;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.01;ReadPosRankSum=-0.579;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:5,16:0.76:21
chr4	70283908	rs2642841	T	A	1647.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr4	70288954	rs2736507	C	T	1025.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.958;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.48;MQRankSum=-1.719;QD=24.42;ReadPosRankSum=-0.592;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:2,40:0.95:42
chr4	70288981	rs2736505	C	T	1005.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:1,37:0.97:38
chr4	70346711	rs28679647	G	C	1799.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr4	70352164	rs41297427	A	AATTATC	546.73	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=49.70;SOR=2.494;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	70355211	rs1845555	T	C	1231.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr4	70355380	rs28542932	T	A	793.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr4	70501545	rs28560191	C	A	193.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	70513139	rs1347046	C	T	8328.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr4	70707945	rs1220724	A	G	521.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	70802218	rs962689	T	C	1130.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr4	70807747	rs62305467	T	C	1366.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr4	70807771	rs10030475	C	T	1241.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr4	70808097	rs3775766	T	C	103.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr4	70864065	rs3775764	G	A	785.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr4	70898907	rs1849937	C	T	2810.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr4	70899037	rs776852	T	A	1458.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr4	70921164	rs2271643	T	C	991.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr4	70921291	rs372745567	C	T	2380.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr4	70921337	rs2271644	G	A	1741.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr4	70936376	rs6837009	G	T	121.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr4	70938324	rs909036	C	T	505.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr4	70944452	rs1399812	G	A	1551.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr4	70947318	rs2063819	C	T	5301.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr4	71005558	rs80069567	T	C	1250.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.06;SOR=1.067;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr4	71007047	rs2272040	A	G	44.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr4	71007339	rs34321013	C	CAA,CAAA	676.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.240;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=26.03;ReadPosRankSum=0.870;SOR=0.880;set=HC	GT:AD:AF:DP	1/2:1,15,10:0.58,0.38:26
chr4	71007387	rs10028117	C	T	420.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	71008313	rs777398	G	T	1603.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr4	71008375	rs777399	T	C	810.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr4	71008402	rs1567911	A	G	522.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	71008910	rs3775758	C	T	1015.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr4	71008940	rs3775759	C	T	1185.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr4	71020205	rs1709273	C	G	772.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr4	71021888	rs1709274	C	T	340.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	71024010	rs111347259	T	TACAA	1887.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr4	71027213	rs62305548	G	T	1713.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.78;SOR=1.044;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr4	71062256	rs3756132	C	T	838.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr4	71062308	rs61747755	C	A	1437.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.22;SOR=0.800;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr4	71062342	rs3756131	C	T	1576.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr4	71062426	rs17704351	C	T	1217.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr4	71065943	rs34093806	GA	G	335.25	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.955;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.39;MQRankSum=0.521;QD=12.42;ReadPosRankSum=0.786;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:4,23:0.85:27
chr4	71067317	rs4694273	C	A	1277.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr4	71068489	rs3196714	T	C	6410.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:1,232:1.00:233
chr4	71113479	rs60315013	CT	C	842.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr4	71201388	rs1351419	C	T	6246.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr4	71227802	rs1842478	A	G	2369.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:1,84:0.99:85
chr4	71227998	rs1842477	A	T	1389.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.43;SOR=2.165;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr4	71228001	rs1842476	G	A	1389.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.83;SOR=2.376;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr4	71232388	rs10031844	G	A	12236.77	.	AC=2;AF=1.00;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	1/1:1,435:1.00:436
chr4	71232430	rs10024123	T	C	18671.77	.	AC=2;AF=1.00;AN=2;DB;DP=739;set=Intersection	GT:AD:AF:DP	1/1:0,713:1.00:713
chr4	71232742	rs3775732	C	G	9423.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chr4	71250308	rs2233586	T	A	1454.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.80;QD=27.98;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr4	71250399	rs7676909	A	G	1021.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr4	71265172	rs1844635	A	C	291.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	71275012	rs1352689	T	C	852.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr4	71275674	.	A	G	13244.77	.	AC=2;AF=1.00;AN=2;DP=500;set=Intersection	GT:AD:AF:DP	1/1:3,484:0.99:487
chr4	71384488	rs28674149	C	T	3859.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr4	71384537	rs35286445	C	T	6694.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:2,247:0.99:249
chr4	71691743	rs6814981	C	T	2123.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr4	71698183	rs4694081	C	A	8716.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr4	71704965	rs3775728	C	T	9817.77	.	AC=2;AF=1.00;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	1/1:0,369:1.00:369
chr4	71705262	rs6813092	A	G	1265.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr4	71768079	rs1871048	C	G	2932.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr4	71864013	rs6446988	A	G	119.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr4	71892513	rs1486271	A	T	1334.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr4	71894321	rs35880082	C	CTTTT	529.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.72;QD=37.84;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr4	71894476	rs11394166	A	AT	360.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.562;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.93;ReadPosRankSum=1.559;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:8,25:0.76:33
chr4	71894563	rs12513202	C	T	613.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.92;SOR=2.448;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	71895260	rs4643786	C	T	217.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	72120854	rs4694387	C	A	133.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr4	72121163	rs4694388	A	G	816.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr4	72316822	rs10022349	C	T	788.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr4	72352587	.	TAA	T	412.74	.	AC=2;AF=1.00;AN=2;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.27;SOR=4.804;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr4	72352590	.	AAA	GGT	658	.	AC=2;AF=1.00;AN=2;BRF=0.14;FR=1.0000;HP=4;HapScore=3;MGOF=0;MMLQ=28;MQ=60.0;NF=9;NR=0;PP=658;QD=80.1630972069;SC=CTGCTTTTAAAAATACCTAAT;SbPval=1.0;Source=Platypus;TC=13;TCF=12;TCR=1;TR=9;WE=72352604;WS=72352580;set=Platypus	GT:AD:AF:DP	1/1:4,9:0.69:13
chr4	72352591	.	A	AGGTT	457.73	.	AC=2;AF=1.00;AN=2;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.77;SOR=4.804;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr4	72352594	.	A	G	511.77	.	AC=2;AF=1.00;ALERT;AN=2;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.52;SOR=4.977;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	72352594	.	A	ATGCT	394	.	AC=2;AF=1.00;AN=2;BRF=0.14;FR=1.0000;HP=2;HapScore=3;MGOF=0;MMLQ=28;MQ=60.0;NF=8;NR=0;PP=394;QD=59.5048130466;SC=TTTTAAAAATACCTAATTATG;SbPval=1.0;Source=Platypus;TC=9;TCF=9;TCR=0;TR=8;WE=72352604;WS=72352580;set=Platypus	GT:AD:AF:DP	1/1:1,8:0.89:9
chr4	72352595	.	CC	TT	438	.	AC=2;AF=1.00;AN=2;BRF=0.14;FR=1.0000;HP=1;HapScore=3;MGOF=0;MMLQ=28;MQ=60.0;NF=9;NR=0;PP=438;QD=54.6075416514;SC=TTTAAAAATACCTAATTATGC;SbPval=1.0;Source=Platypus;TC=14;TCF=13;TCR=1;TR=9;WE=72352604;WS=72352580;set=Platypus	GT:AD:AF:DP	1/1:5,9:0.64:14
chr4	72352595	.	C	CTT	502.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.70;SOR=4.977;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	72352596	rs201950603	C	T	511.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.65;SOR=5.136;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	72397964	rs10446504	T	C	2829.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr4	72411967	rs4694097	A	G	263.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	72412029	rs3733362	G	A	1008.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:1,38:0.97:39
chr4	72413314	rs16845201	C	G	3309.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr4	72423624	rs1453474	C	T	1862.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr4	72425863	rs1453458	C	T	4525.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr4	72429452	rs2290397	G	A	1872.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr4	72432991	rs965606	A	C	495.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	72433759	rs1453453	C	T	38.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr4	72618296	rs9016	T	C	2490.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:1,94:0.99:95
chr4	72618323	rs4588	G	T	2947.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr4	72620865	rs71673486	C	CTATTTATT	2388.73	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr4	72622403	rs222033	A	C	3320.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr4	72634975	rs222016	G	A	3998.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr4	72934539	rs9884712	A	C	258.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	72934555	rs35549647	GT	G	61.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.471;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.12;ReadPosRankSum=0.450;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:7,8:0.53:15
chr4	72934578	rs11444220	C	CT	612.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.51;SOR=1.893;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr4	72934632	rs9884478	C	T	1297.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr4	73175048	rs12501859	G	A	1568.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr4	73175093	rs10024487	C	T	2945.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr4	73414286	rs788908	C	T	4793.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr4	73433122	rs33925079	GA	G	4919.73	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr4	73433315	rs6830556	G	C	1390.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr4	73434379	rs5859330	GT	G	1877.73	.	AC=2;AF=1.00;AN=2;DB;DP=103;MQ=60.52;set=Intersection	GT:AD:AF:DP	1/1:3,92:0.97:95
chr4	73615956	rs1350836	C	T	6031.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:2,229:0.99:231
chr4	73930889	.	CTT	C	221.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.930;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=9.204;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.92;ReadPosRankSum=0.669;SOR=2.262;set=HC	GT:AD:AF:DP	0/1:14,14:0.50:28
chr4	73930892	.	T	TG	128.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.990;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.44;ReadPosRankSum=-0.202;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:18,11:0.38:29
chr4	73930895	.	T	G	230.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.652;ClippingRankSum=0.000;DP=37;ExcessHet=3.0103;FS=15.346;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.44;ReadPosRankSum=1.549;SOR=2.234;set=HC	GT:AD:AF:DP	0/1:17,14:0.45:31
chr4	73931143	rs144989002	TA	T	4374.73	.	AC=2;AF=1.00;AN=2;DB;DP=115;MQ=60.47;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr4	73933633	rs6845082	A	T	886.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr4	73933671	rs68113340	ATGTGTG	A,ATG	2796.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.45;QD=38.31;SOR=1.885;set=HC	GT:AD:AF:DP	1/2:0,17,56:0.23,0.77:73
chr4	73942678	rs2306058	C	T	2592.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:1,95:0.99:96
chr4	73991006	rs6822576	T	C	5273.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr4	74014809	rs1534450	A	C	2141.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr4	74285191	.	G	GT	45.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.526;ClippingRankSum=0.000;DP=97;ExcessHet=3.0103;FS=3.843;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.50;ReadPosRankSum=-1.359;SOR=1.234;set=HC	GT:AD:AF:DP	0/1:76,16:0.17:92
chr4	74285758	rs2236766	G	T	1900.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr4	74285823	rs2236767	G	A	2424.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr4	74302870	rs16849384	T	C	2055.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr4	74304118	rs6446932	T	A	767.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr4	74313169	rs7667494	T	C	459.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.20;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr4	74318330	rs4235117	A	G	1654.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr4	74352916	rs2071098	A	G	2814.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr4	74354632	rs13107306	T	C	294.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	74363282	rs1158101	T	C	392.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	74364992	rs67050083	CT	C	753.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.814;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=1.156;MLEAC=1;MLEAF=0.500;MQ=60.53;MQRankSum=1.606;QD=9.31;ReadPosRankSum=-0.612;SOR=0.482;set=HC	GT:AD:AF:DP	0/1:17,64:0.79:81
chr4	74367706	rs1159624	C	T	523.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	74447800	rs2008288	A	G	235.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	74448078	rs148589925	ATCT	A	940.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr4	74448134	rs141070355	TTTTG	T	412.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.27;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr4	74450830	rs7682201	G	A	421.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	74451073	rs12507775	A	G	7791.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr4	74451092	rs12508661	T	G	7228.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr4	74453656	rs10019146	G	A	8449.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr4	74453691	rs10011419	T	C	5847.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr4	74464285	rs10632092	T	TTG	1597.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.808;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=2.783;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=-0.683;QD=23.85;ReadPosRankSum=-1.026;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:12,55:0.82:67
chr4	74464443	rs11368217	TA	T	333.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:1,18:0.95:19
chr4	74486052	rs1247591	C	G	810.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr4	74486264	rs1247590	G	A	4365.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr4	74607868	rs369603475	TA	T	157.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	74711842	rs34821794	C	T	2863.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr4	74713950	rs7658970	T	C	2227.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr4	74714098	rs2367288	G	A	9489.77	.	AC=2;AF=1.00;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	1/1:0,360:1.00:360
chr4	74718941	rs941758	C	A	2046.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr4	74719925	rs11723868	G	A	2626.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr4	74736144	rs4074	A	G	6677.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr4	74847111	rs11574450	A	C	3965.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr4	74847292	rs352007	G	C	1987.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;QD=27.23;SOR=1.516;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr4	74863997	rs425535	T	C	10007.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:0,361:1.00:361
chr4	75023609	rs6840665	T	C	10426.77	.	AC=2;AF=1.00;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	1/1:0,373:1.00:373
chr4	75023709	rs2289443	C	T	12910.77	.	AC=2;AF=1.00;AN=2;DB;DP=484;set=Intersection	GT:AD:AF:DP	1/1:2,478:1.00:480
chr4	75040944	rs13116686	T	G	6765.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:1,251:1.00:252
chr4	75046310	rs4694183	A	C	1087.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr4	75046372	rs561583	A	G	2957.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr4	75046465	rs561844	C	G	5245.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr4	75107255	rs4694184	T	C	2376.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:4,94:0.96:98
chr4	75174789	rs138441680	G	T	5284.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:1,198:0.99:199
chr4	75231244	rs1460006	C	G	687.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.90;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	75245343	rs7660209	T	A	850.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr4	75246617	rs4694187	A	T	958.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr4	75248434	rs2367707	A	G	4955.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr4	75248544	rs2367708	C	T	1755.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr4	75673455	rs7699847	T	A	1171.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.25;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr4	75681217	rs11734944	A	G	2736.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr4	75937971	rs3822109	C	T	13270.77	.	AC=2;AF=1.00;AN=2;DB;DP=479;set=Intersection	GT:AD:AF:DP	1/1:2,469:1.00:471
chr4	75938179	rs3775527	G	A	17807.77	.	AC=2;AF=1.00;AN=2;DB;DP=673;set=Intersection	GT:AD:AF:DP	1/1:2,662:1.00:664
chr4	75938236	rs1062293	A	G	11002.77	.	AC=2;AF=1.00;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	1/1:2,396:0.99:398
chr4	75938373	rs919052	C	G	2234.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr4	76415985	rs6833496	G	A	1854.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr4	76416779	rs2045863	G	A	3603.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr4	76442226	rs34218401	C	CT	57.27	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.085;ClippingRankSum=-0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.36;ReadPosRankSum=-1.221;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:2,7:0.78:9
chr4	76446921	rs112121251	G	GATT	4207.73	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr4	76467577	rs11722735	A	G	1325.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr4	76481497	rs17214357	A	G	2104.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr4	76481628	rs62318656	A	C	935.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr4	76488533	rs141320514	GCCAAAAT	G	592.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr4	76570994	rs35597810	C	A	2090.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr4	76571732	rs884871	C	T	1272.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr4	76572191	rs2175766	A	C	1425.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr4	76573688	rs13129043	G	A	283.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr4	76580894	rs17000733	G	A	3076.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr4	76649924	rs2280095	C	G	1360.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr4	76650176	rs7657871	C	G	605.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	76670180	rs3853184	T	C	14565.77	.	AC=2;AF=1.00;AN=2;DB;DP=539;set=Intersection	GT:AD:AF:DP	1/1:0,535:1.00:535
chr4	76678576	rs4859552	A	G	1525.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr4	76691828	rs324715	G	C	981.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr4	76695810	rs10588680	TTCTC	T	3185.73	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr4	76711200	rs67037358	TA	T	399.25	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.213;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=5.114;MLEAC=2;MLEAF=1.000;MQ=60.37;MQRankSum=0.471;QD=14.79;ReadPosRankSum=-1.081;SOR=3.300;set=HC	GT:AD:AF:DP	1/1:3,24:0.89:27
chr4	76720885	rs13119659	T	C	2201.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr4	76721414	rs13145290	C	G	1678.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr4	76721459	rs4859409	G	A	2461.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr4	76721671	rs35563762	C	CTTT	738.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.990;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=0.693;QD=16.79;ReadPosRankSum=0.438;SOR=0.603;set=HC	GT:AD:AF:DP	0/1:13,31:0.70:44
chr4	76721705	rs2271472	C	G	1625.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr4	76722041	rs324727	G	A	1393.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr4	76722353	rs324726	G	A	2551.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr4	76722422	rs13133472	T	C	2167.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr4	76725245	rs381067	G	T	3937.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr4	76726528	rs11733253	T	C	642.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.85;SOR=4.047;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	76726539	rs11728073	C	T	753.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.67;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr4	76727576	rs11312984	GT	G	647.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr4	76730004	rs324687	G	C	355.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	76730061	rs324688	T	A	824.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr4	76730258	rs324690	T	C	1127.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr4	76730309	rs145662788	CTTTAGATTACTTACTAGCCGG	C	638.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	76785716	rs1394913	C	T	818.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.94;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr4	76785723	rs1394914	A	G	769.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.28;SOR=2.179;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	76785736	rs1394915	T	C	454.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	76787673	rs7654738	T	C	2811.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr4	76788692	rs2135234	C	T	1227.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr4	76793228	rs1394916	A	G	4326.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr4	76794345	rs6858658	T	G	8078.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:1,296:1.00:297
chr4	76797950	rs13132709	G	A	678.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr4	76800729	rs13130621	A	G	893.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr4	76800991	rs68095351	A	AT	135.25	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.253;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=13.52;ReadPosRankSum=1.036;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:1,9:0.90:10
chr4	76804067	rs4859564	A	G	6524.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr4	76805902	rs1976518	C	T	4026.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;MQ=59.99;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr4	76805962	rs1976517	G	A	2734.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr4	76805978	rs1566975	C	T	2232.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr4	76809319	rs7691712	A	G	1966.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr4	76809386	rs7691755	A	G	3445.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr4	76811175	rs28436183	G	T	2116.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:1,83:0.99:84
chr4	76836137	rs6823734	A	G	2126.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr4	76838929	rs34444403	TA	T	401.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.485;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.405;QD=2.83;ReadPosRankSum=1.101;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:87,55:0.39:142
chr4	76839108	rs6819442	C	T	7117.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:2,259:0.99:261
chr4	76841748	rs2280101	A	G	1361.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr4	76846755	rs937788	T	C	1113.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr4	76861137	rs6847716	G	C	1509.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr4	76861859	rs2292533	C	T	5512.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr4	76878716	rs2242471	G	C	3785.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr4	76878956	rs2242473	G	A	3364.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:1,125:0.99:126
chr4	76878982	rs2242474	T	C	2669.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:1,106:0.99:107
chr4	77021433	rs6532189	C	T	4371.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:2,165:0.99:167
chr4	77021915	rs72655511	G	A	3663.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:2,139:0.99:141
chr4	77028783	rs10033843	G	A	1469.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr4	77053562	rs4859619	C	T	1399.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr4	77053834	rs61750814	T	C	5963.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr4	77065476	rs33962347	TA	T	852.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.122;ClippingRankSum=0.000;DB;DP=292;ExcessHet=3.0103;FS=1.840;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=2.572;QD=3.57;ReadPosRankSum=-0.507;SOR=0.535;set=HC	GT:AD:AF:DP	0/1:147,92:0.38:239
chr4	77089428	.	C	A	2411.77	.	AC=2;AF=1.00;AN=2;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr4	77105938	.	C	CA	87.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.308;ClippingRankSum=0.000;DP=133;ExcessHet=3.0103;FS=2.269;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=1.962;QD=0.73;ReadPosRankSum=0.603;SOR=1.047;set=HC	GT:AD:AF:DP	0/1:96,24:0.20:120
chr4	77192838	rs3733251	A	C	4800.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr4	77201332	rs1036787	G	A	707.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr4	77201487	rs1036788	C	T	2925.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr4	77204500	rs1542096	C	T	630.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr4	77211104	rs1837871	A	G	745.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr4	77274242	rs12504985	T	C	4783.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr4	77289047	rs5859510	CT	C	343.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.241;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.94;ReadPosRankSum=-0.274;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:1,22:0.96:23
chr4	77290561	rs72657825	G	A	1998.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr4	77296600	rs1876535	T	C	2768.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr4	77303898	rs6844174	C	T	1585.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr4	77494534	.	CAATAATAATAAT	CAAT,C	445.73	.	AC=2,0;AF=1.00,0.00;AN=2;DP=16;set=Intersection	GT:AF:DP	1/1:1.00:10
chr4	77637502	rs344122	A	C	6804.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr4	77660162	rs344140	G	C	8246.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr4	77660731	rs344141	C	G	5961.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr4	77662248	rs344142	G	A	3782.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr4	77662309	rs344143	C	T	4084.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr4	77663262	rs344144	T	C	5524.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr4	77663305	rs77384874	CTCTA	C	3327.73	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr4	77675505	rs3733242	C	T	10969.77	.	AC=2;AF=1.00;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	1/1:2,405:1.00:407
chr4	77677557	rs11383067	T	TC	207.27	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=1.016;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=2.447;MLEAC=2;MLEAF=1.000;MQ=62.36;MQRankSum=0.754;QD=13.82;ReadPosRankSum=-0.067;SOR=0.477;set=HC	GT:AD:AF:DP	1/1:4,11:0.73:15
chr4	77677558	rs11383066	T	TCTC	697.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.13;QD=34.89;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr4	77916865	rs6532758	G	A	769.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr4	77917194	rs7356354	A	G	580.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr4	77917458	rs7685131	A	G	3234.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr4	77987351	rs4241602	A	G	1613.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr4	78649934	.	T	C	2744.77	.	AC=2;AF=1.00;AN=2;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr4	78669454	rs6855336	A	G	1272.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr4	78697552	rs34417165	T	TA	260.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.071;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=2.271;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.34;ReadPosRankSum=-0.264;SOR=1.336;set=HC	GT:AD:AF:DP	0/1:5,18:0.78:23
chr4	78740066	rs6811439	T	C	1183.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.73;SOR=1.203;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr4	78740132	rs6828302	G	C	1527.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.46;SOR=0.986;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr4	78740160	rs77103397	G	A	1607.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.93;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr4	78740203	.	G	GACACACACACAC,GACACACACACACAC	1674.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=52.34;SOR=1.101;set=HC	GT:AD:AF:DP	1/2:0,12,20:0.38,0.62:32
chr4	78830272	rs10551874	AAC	A	322.75	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	78870940	rs4859513	T	A	3396.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr4	78882331	rs57716781	C	CA	99.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.038;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.37;ReadPosRankSum=-0.107;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:30,12:0.29:42
chr4	78987157	rs4859905	A	G	5381.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr4	78987284	rs4859516	AC	CA	1404.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr4	78989630	rs10016219	G	A	798.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr4	78989672	rs10016229	G	C	1902.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr4	78989716	rs10008489	T	C	2553.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:2,102:0.98:104
chr4	78989842	rs10016432	G	A	1051.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr4	79158843	rs10011303	G	T	1655.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr4	79173515	rs34015316	C	CT	3257.73	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:28,178:0.86:206
chr4	79176325	rs1017647	C	T	1614.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr4	79176361	rs1017646	T	C	2552.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr4	79186171	rs2867014	G	A	4564.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr4	79187832	rs2008587	G	A	823.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr4	79187900	rs7694740	T	G	2882.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr4	79188160	rs2008786	C	T	1521.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr4	79204209	rs1378236	C	T	767.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr4	79284694	rs6835769	C	T	3084.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr4	79295418	rs34889042	C	CTG	2287.73	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr4	79334264	rs1872268	T	A	886.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr4	79340016	rs34936138	A	AT	1578.73	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr4	79343111	rs78575519	G	A	8267.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:2,318:0.99:320
chr4	79350200	rs112867538	C	CTG,CTGTG	2440.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=70;set=Intersection	GT:AF:DP	1/2:0.12,0.82:68
chr4	79350352	rs201188262	G	A	2932.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr4	79359885	rs2170899	T	G	2016.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr4	79365479	rs7678731	C	T	107.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr4	79366655	rs3749489	G	C	6854.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr4	79372856	rs10026662	A	C	4831.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr4	79372930	rs753752	C	T	7463.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr4	79373254	rs753751	T	C	608.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr4	79385719	rs6851427	G	A	2553.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr4	79387464	rs7684722	A	G	10005.77	.	AC=2;AF=1.00;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	1/1:0,374:1.00:374
chr4	79391020	rs7681619	C	T	2550.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr4	79391036	rs1496602	T	C	2961.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr4	79391256	rs7664505	T	C	6315.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr4	79391424	rs6533688	C	T	285.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr4	79400868	rs11098194	C	T	1150.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr4	79403146	rs34505482	A	T	2921.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr4	79409997	rs1496603	T	C	317.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	79442799	.	G	GT	92.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.389;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.43;ReadPosRankSum=0.799;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:18,9:0.33:27
chr4	79443774	rs931604	T	A	1867.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr4	79455858	rs4975140	T	A	997.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr4	79516694	.	C	CT	154.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.335;ClippingRankSum=0.000;DP=58;ExcessHet=3.0103;FS=1.317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.44;ReadPosRankSum=-0.807;SOR=1.123;set=HC	GT:AD:AF:DP	0/1:30,15:0.33:45
chr4	79697892	rs201253367	AGGCTC	A	1087.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr4	79781169	.	G	GT	207.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.788;ClippingRankSum=0.000;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.41;ReadPosRankSum=-0.290;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:39,22:0.36:61
chr4	79786974	rs2288254	T	C	1011.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr4	79793707	rs1061400	C	A	933.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr4	80905990	rs12647691	C	G	2863.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:5,116:0.96:121
chr4	80906131	rs4444771	C	T	973.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr4	80945815	rs61744630	C	A	691.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	80957195	.	G	GA	49.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.952;ClippingRankSum=0.000;DP=62;ExcessHet=3.0103;FS=7.206;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=2.791;QD=0.90;ReadPosRankSum=0.796;SOR=1.787;set=HC	GT:AD:AF:DP	0/1:44,11:0.20:55
chr4	80993002	.	CA	C	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.186;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;FS=2.982;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.16;ReadPosRankSum=-2.254;SOR=0.155;set=HC	GT:AD:AF:DP	0/1:26,9:0.26:35
chr4	81121524	rs11099079	T	A	2125.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr4	81124596	rs12780	G	C	6885.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:4,261:0.98:265
chr4	81222286	rs13119149	T	G	288.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	81529380	rs2903671	T	C	1877.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr4	81529518	rs2867782	T	C	3440.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr4	81884610	rs11452353	A	AT	873.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.36;QD=24.96;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr4	81884722	rs1052325	G	A	4853.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr4	81967188	rs6831040	C	T	6581.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr4	81973224	rs12647814	A	T	2048.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr4	81973260	rs1390318	C	T	1988.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr4	82013619	rs59866145	A	AAAGGAAGG	186.87	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.37;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr4	82366788	rs28560455	C	T	5513.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:2,203:0.99:205
chr4	82368633	rs59588994	G	T	3400.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr4	82369160	rs1077802	C	T	1443.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr4	82369205	rs1077803	T	A	2333.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr4	83276386	rs34411705	G	A	502.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	83276430	rs3838641	C	CA	664.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:2,33:0.94:35
chr4	83347309	rs34583014	TAAGA	T	3229.73	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:2,76:0.97:78
chr4	83352177	rs10646358	C	CTT	3845.73	.	AC=2;AF=1.00;AN=2;DB;DP=98;MQ=60.22;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr4	83369287	rs4285076	A	G	1942.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;MQ=60.15;set=Intersection	GT:AD:AF:DP	1/1:1,69:0.99:70
chr4	83375719	rs6853622	T	C	430.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	83406549	rs113689314	A	ATGTGTG	633.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	83552809	rs3857138	A	C	530.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	83626429	rs3821972	T	C	3986.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr4	83626674	rs6853042	G	A	3425.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr4	83742336	rs4634209	C	T	1404.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr4	83778378	rs4235054	A	T	1631.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr4	83784337	rs7666917	G	A	728.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr4	83787845	rs7356522	G	A	1183.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr4	83788139	rs2290739	C	A	1350.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr4	83788344	rs2045478	A	T	7871.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr4	83788562	rs2045479	T	C	1894.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr4	83791373	rs10015419	C	T	1971.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr4	83791649	rs3762902	G	T	1928.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr4	83792464	rs35679019	TAC	T	639.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.57;QD=42.65;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	83792498	rs7685043	G	T	824.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr4	83792555	rs7686508	C	A	851.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr4	83793243	rs4693525	A	C	2962.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr4	83793354	rs143845447	A	ATTTTG	1074.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;MQ=60.42;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr4	83793368	rs11942312	C	T	558.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr4	83795806	rs10025654	T	C	3543.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr4	83838217	rs1031639	G	A	8377.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chr4	83838262	rs897945	G	T	9774.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:1,360:1.00:361
chr4	83839799	rs6535411	A	G	1823.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr4	83852065	rs985899	G	A	2631.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr4	83857402	rs6535415	T	C	1490.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr4	83900043	rs6535422	A	G	4426.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr4	83900260	rs7674484	A	G	1000.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr4	83905258	rs9994716	C	G	1302.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr4	83977975	rs6535432	C	T	599.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr4	83989516	rs2868747	T	C	296.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	84188850	rs1129617	G	A	1598.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr4	84205618	rs13113787	A	C	1756.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr4	84223461	rs4285078	G	C	3065.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr4	84370124	rs10718573	TA	T	80.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.677;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=3.098;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.06;ReadPosRankSum=0.730;SOR=0.304;set=HC	GT:AD:AF:DP	0/1:59,17:0.22:76
chr4	84376743	rs6831595	A	T	8965.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr4	84390469	rs148107040	G	GT	79.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.085;ClippingRankSum=-0.000;DB;DP=26;ExcessHet=3.0103;FS=6.803;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.70;ReadPosRankSum=-0.250;SOR=0.045;set=HC	GT:AD:AF:DP	0/1:6,8:0.57:14
chr4	84401623	rs6838354	T	C	93.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr4	84458001	rs55833887	A	G	1322.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr4	84458028	rs56139069	C	G	803.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr4	84465613	rs10516690	C	T	773.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr4	84465855	rs28360718	A	C	639.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr4	84509465	rs11394944	T	TG	8007.73	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr4	84525973	rs35602893	CT	C	4422.73	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr4	85414741	rs13123447	C	T	2727.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr4	85416797	rs2278671	T	G	411.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	85465388	.	TTA	T	498.94	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.745;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=0.490;QD=12.47;ReadPosRankSum=-2.331;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:6,34:0.85:40
chr4	85552882	rs41282379	G	T	1529.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr4	85555196	rs13102661	G	A	1202.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr4	85560271	rs9784491	G	A	244.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	85625701	rs1838039	A	G	910.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr4	85710822	rs200702938	ACC	A	32.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.745;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=6.812;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.36;ReadPosRankSum=-0.712;SOR=0.016;set=HC	GT:AD:AF:DP	0/1:19,5:0.21:24
chr4	85710824	rs13137042	C	A	368.74	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.368;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=5.798;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.36;ReadPosRankSum=1.206;SOR=3.611;set=HC	GT:AD:AF:DP	0/1:5,19:0.79:24
chr4	85765541	rs2869216	T	C	1427.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr4	86643057	rs144785317	G	A	5419.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:2,205:0.99:207
chr4	86643538	.	C	CA	48.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.377;ClippingRankSum=0.000;DP=102;ExcessHet=3.0103;FS=3.456;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.50;ReadPosRankSum=0.274;SOR=1.316;set=HC	GT:AD:AF:DP	0/1:79,19:0.19:98
chr4	86851884	rs13126782	T	G	179.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr4	86950543	rs72660194	A	G	287.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	86952590	rs13103861	G	A	2387.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr4	86952687	rs9307014	C	G	1357.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr4	86952740	rs72660197	C	T	977.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr4	86952751	rs10516763	T	C	695.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	87024228	.	C	CTGTG,CTGTGTG	1105.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=31;set=Intersection	GT:AF:DP	1/2:0.31,0.69:26
chr4	87024409	rs28529458	T	C	1753.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr4	87622624	rs61730646	G	A	5144.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:2,193:0.99:195
chr4	87638342	rs35080587	A	AT	90.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.808;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=8.554;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.67;ReadPosRankSum=-0.431;SOR=2.321;set=HC	GT:AD:AF:DP	0/1:23,11:0.32:34
chr4	87752909	rs7690165	T	G	2253.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr4	87809387	rs1550931	G	T	7618.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr4	87812564	rs10011798	G	C	6622.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr4	87812586	rs55723875	TA	T	7121.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:2,180:0.99:182
chr4	87812588	rs114349215	A	T	3356.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:16,165:0.91:181
chr4	87812810	rs35305216	G	GA	1293.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr4	87957989	rs340629	T	C	5016.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.196;ClippingRankSum=0.000;DB;DP=386;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=20.31;ReadPosRankSum=-1.108;SOR=4.985;set=HC	GT:AD:AF:DP	1/1:4,243:0.98:247
chr4	87970992	.	C	T	977.77	.	AC=2;AF=1.00;AN=2;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr4	88005203	rs236996	G	A	2544.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr4	88056925	rs342464	A	G	4233.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr4	88226533	rs7692397	C	A	333.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	88231339	rs59716219	CA	C	853.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.680;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.87;ReadPosRankSum=1.314;SOR=1.075;set=HC	GT:AD:AF:DP	1/1:1,32:0.97:33
chr4	88234874	rs7698974	C	T	721.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr4	88238448	rs6531975	A	G	1431.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr4	88258483	rs9991501	T	C	1012.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr4	88261828	rs7679024	A	C	4121.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr4	88532182	.	A	AGTGTGTGTGTGT	803.73	.	AC=2;AF=1.00;AN=2;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=50.23;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	88533163	rs202009023	TTGTGTG	T	306.74	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	88533540	rs36094464	A	T	5696.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:2,212:0.99:214
chr4	88534235	rs2736982	A	G	3985.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr4	88537522	.	C	CAGCAGTGACAGCAGCGAT	10775.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.093;ClippingRankSum=0.000;DP=480;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.37;MQRankSum=-0.560;QD=33.78;ReadPosRankSum=1.743;SOR=0.712;set=HC	GT:AD:AF:DP	1/1:5,314:0.98:319
chr4	88537737	rs2615489	G	A	5129.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr4	88577573	rs2615480	A	G	2924.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr4	88578310	rs2615479	A	G	534.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr4	88583135	rs10019009	A	T	3041.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr4	88732453	rs4693183	C	T	557.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr4	88732531	rs4693878	T	C	1567.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr4	88732746	rs13144371	A	G	4895.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr4	88732874	rs17013182	A	G	5793.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr4	88755828	rs7698623	T	C	4110.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr4	88759690	rs6835632	T	C	288.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr4	88815439	rs3061164	CA	C	458.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.389;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=3.598;MLEAC=1;MLEAF=0.500;MQ=60.49;MQRankSum=0.638;QD=13.11;ReadPosRankSum=0.713;SOR=2.400;set=HC	GT:AD:AF:DP	1/1:3,32:0.91:35
chr4	88929173	.	CGAG	C	107.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.016;ClippingRankSum=0.000;DP=56;ExcessHet=3.0103;FS=1.560;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.07;ReadPosRankSum=-1.115;SOR=0.849;set=HC	GT:AD:AF:DP	0/1:45,7:0.13:52
chr4	88929305	rs2728118	G	A	886.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr4	88959381	rs2725221	G	A	3329.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr4	88986745	rs11404312	C	CT	552.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.473;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=0.474;QD=16.26;ReadPosRankSum=1.371;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:3,31:0.91:34
chr4	89016782	rs2231162	A	G	2160.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr4	89020427	rs2231156	C	A	798.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr4	89022362	rs2231153	C	T	2163.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr4	89036353	rs2725261	C	T	2261.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr4	89036384	.	G	GTCTCTCTCTCTCTCTGTCTCTCTCTCTCTCTC	1126.73	.	AC=2;AF=1.00;AN=2;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.34;SOR=4.255;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr4	89052323	rs2231142	G	T	7457.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr4	89199397	rs116564150	G	A	4324.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr4	89319296	rs17014118	T	C	2819.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr4	89358212	.	C	CT	59.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.300;ClippingRankSum=-0.000;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.27;ReadPosRankSum=-0.126;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:8,6:0.43:14
chr4	89378760	rs150387057	C	CG	239.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	89389640	rs4585264	C	A	792.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr4	89397091	rs7699006	A	G	8733.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr4	89415396	rs6857425	T	C	10567.77	.	AC=2;AF=1.00;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	1/1:0,389:1.00:389
chr4	89443162	rs3177413	G	A	2858.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr4	89444528	rs67364668	G	A	629.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr4	89599421	rs2604227	A	C	488.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	89689354	rs3756049	A	G	1308.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr4	89702564	rs2290784	C	G	1285.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr4	89711690	rs112676553	T	TA	177.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.277;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=1.907;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.33;ReadPosRankSum=0.077;SOR=0.781;set=HC	GT:AD:AF:DP	0/1:102,32:0.24:134
chr4	89711849	rs2290782	T	C	7656.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.26;SOR=1.231;set=HC	GT:AD:AF:DP	1/1:0,177:1.00:177
chr4	89711854	rs2290781	C	T	7354.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.85;SOR=1.264;set=HC	GT:AD:AF:DP	1/1:0,164:1.00:164
chr4	89726073	rs3822075	T	A	5356.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:2,201:0.99:203
chr4	89726283	rs2276936	A	C	734.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr4	89827492	rs13132415	G	T	2519.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr4	89978281	rs11097210	G	A	242.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	90168825	rs7672015	T	C	646.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	90168882	rs13115988	G	A	1632.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr4	90169925	rs7653897	A	G	5136.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr4	90170118	rs28622301	A	G	4058.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr4	90743317	rs3216147	T	TC	2323.73	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr4	90743331	rs10005233	C	T	2265.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr4	90756550	rs7681440	C	G	1135.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr4	90816023	rs1442140	A	G	351.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	90816790	rs2289515	T	A	932.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr4	90855932	rs1038140	T	C	318.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	90874095	rs3832297	A	AC	1537.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr4	91234250	rs1466391	A	G	810.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr4	91246656	rs1870795	C	T	2100.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr4	91246905	rs9284586	C	G	750.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr4	91246916	rs9284587	G	A	637.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr4	91585003	rs62314392	T	C	1340.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr4	91701720	rs2271592	C	T	1836.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr4	91737022	rs17187511	C	T	7065.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr4	91737057	rs17017644	G	A	5217.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr4	91737150	rs17017647	C	T	1430.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr4	91832609	rs6855137	G	C	2814.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr4	92240031	rs9999729	C	G	883.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr4	92240080	rs9999885	G	A	1748.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr4	92240278	rs7653977	A	T	1178.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr4	92240317	rs7683541	T	C	436.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	92240802	rs6532289	C	T	2401.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr4	92240892	rs6816636	C	A	3903.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr4	92240925	rs6532290	T	G	3594.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr4	92241031	rs6817404	G	T	1478.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr4	92241071	rs6816883	A	G	632.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr4	92246344	rs3762827	G	A	3445.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr4	92246541	rs1528572	T	A	629.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr4	93225752	.	G	GA	165.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.062;ClippingRankSum=0.000;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.93;ReadPosRankSum=0.377;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:64,22:0.26:86
chr4	93511396	rs34144324	C	T	5178.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr4	93511481	rs2870639	G	A	2004.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr4	94032125	rs2271385	G	C	4277.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr4	94159770	rs13142615	A	G	660.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.602;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.60;ReadPosRankSum=0.452;SOR=1.542;set=HC	GT:AD:AF:DP	1/1:1,27:0.96:28
chr4	94180159	rs7687990	A	G	2307.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr4	94547357	rs11726506	C	G	1505.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr4	95134165	rs10433970	C	G	1713.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr4	95147553	rs34491534	C	CT	104.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=14.97;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	95161996	rs2306803	C	T	431.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	95169682	rs10034781	G	T	5577.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr4	95169772	rs7435106	T	A	2792.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr4	95170839	rs11722476	G	A	830.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:1,33:0.97:34
chr4	95173779	rs7439869	T	C	516.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	95186055	rs2306802	A	G	932.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr4	95197520	rs6823404	C	T	4400.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr4	95199479	rs35670996	C	G	271.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	95202492	rs35361491	G	A	815.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr4	95206252	rs67631469	TTATC	T	2802.73	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr4	95210855	rs200998764	TACTC	T	457.73	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	95503670	rs3857212	G	T	875.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr4	95503902	rs5013417	T	C	5143.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr4	95505975	rs12639887	C	T	248.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	95506266	rs145706719	G	C	595.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr4	95508108	.	CTT	C,CT	956.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.271;ClippingRankSum=0.000;DP=116;ExcessHet=3.0103;FS=5.314;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.28;MQRankSum=0.947;QD=9.86;ReadPosRankSum=1.555;SOR=0.283;set=HC	GT:AD:AF:DP	1/2:18,36,43:0.37,0.44:97
chr4	95529430	rs10033359	C	T	653.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	95529444	rs9307146	C	A	509.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	95531417	rs10017461	A	G	3276.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr4	95531562	rs10007050	T	C	399.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	95539267	rs966845	G	A	5222.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr4	95561459	rs7690296	A	G	4188.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr4	95561651	.	G	GT	213.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.340;ClippingRankSum=0.000;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=1.680;QD=4.36;ReadPosRankSum=0.222;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:28,21:0.43:49
chr4	95578588	rs13107595	G	A	7002.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:2,259:0.99:261
chr4	96035796	rs10622489	G	GAC	552.73	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:6,20:0.77:26
chr4	96073956	rs1365691	A	T	2904.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr4	96075965	rs1434536	C	T	1383.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr4	96091250	rs2241744	G	A	824.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr4	96091524	rs2241743	G	A	2101.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr4	96106322	rs2289043	A	G	3685.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr4	96123981	rs3733212	C	T	2750.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr4	96127869	rs2276322	T	G	3149.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr4	96137512	rs995062	T	C	1054.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr4	96256616	rs4699423	A	G	5580.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr4	96256673	rs1843018	G	A	5787.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr4	96469708	rs4699431	A	T	449.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.45;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	98761900	rs11735193	C	T	4720.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:1,180:0.99:181
chr4	98864859	rs28417716	C	T	249.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	98893334	rs13147195	G	T	789.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr4	98902278	rs35146453	A	G	831.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr4	99027137	rs2865979	T	C	1182.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr4	99027184	rs2903150	T	C	514.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr4	99027218	rs2903151	T	C	279.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	99030211	rs10019087	C	T	37.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.87;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr4	99049593	rs17558193	A	G	711.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr4	99055406	rs13328042	A	G	305.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr4	99055480	rs13328005	T	C	1071.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr4	99055730	rs35399947	C	CTAA	53.70	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr4	99064379	rs4699605	A	G	1188.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr4	99218108	rs34325900	G	GA	2856.73	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr4	99337881	rs10516430	C	T	2236.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr4	99399748	rs4303985	G	T	1610.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr4	99408106	rs6838913	T	C	1041.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr4	99918661	rs10035037	A	C	1035.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.54;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr4	99926965	rs2123782	T	C	2903.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr4	99927022	rs143280991	G	A	1805.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr4	99952607	rs1037476	C	T	3501.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr4	99952710	rs1037475	A	G	7741.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr4	99966568	rs11721765	G	C	882.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr4	100001247	rs1154412	T	C	1004.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr4	100006645	rs1154410	A	G	4073.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr4	100009738	rs1154401	G	C	11819.77	.	AC=2;AF=1.00;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	1/1:0,437:1.00:437
chr4	100009952	rs11434442	T	TGG	223.75	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.47;QD=27.97;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	100020987	rs2602844	C	T	133.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr4	100021124	rs2851279	T	C	162.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr4	100021253	rs2851278	G	C	44.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr4	100045500	rs1042365	T	G	544.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr4	100045574	rs1042364	T	C	1266.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr4	100045616	rs1126673	C	T	1092.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr4	100045647	rs2602894	A	G	677.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr4	100047929	rs10009145	G	A	1556.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr4	100048327	rs9307234	G	A	3440.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr4	100048414	rs1126671	T	C	7898.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr4	100048506	rs6836440	G	A	4399.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr4	100052733	rs1126670	C	A	2152.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr4	100062819	rs2032349	A	G	5362.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr4	100064166	rs5860566	G	GA	364.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.10;QD=21.45;SOR=2.712;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	100064305	rs4699715	C	G	3658.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr4	100065509	rs1800759	T	G	1200.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr4	100137292	.	AT	A	325.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.416;ClippingRankSum=0.000;DP=60;ExcessHet=3.0103;FS=1.624;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.51;ReadPosRankSum=1.170;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:13,37:0.74:50
chr4	100140306	rs4699735	A	T	4342.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr4	100205819	rs28364312	C	A	4331.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.723;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=3.053;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=42.06;ReadPosRankSum=0.974;SOR=0.285;set=HC	GT:AD:AF:DP	1/1:1,102:0.99:103
chr4	100205829	rs28364311	T	G	4159.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.860;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=3.150;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=42.88;ReadPosRankSum=-0.437;SOR=0.359;set=HC	GT:AD:AF:DP	1/1:1,96:0.99:97
chr4	100212172	.	TA	T	72.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.323;ClippingRankSum=0.000;DP=150;ExcessHet=3.0103;FS=2.967;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.56;ReadPosRankSum=0.738;SOR=0.835;set=HC	GT:AD:AF:DP	0/1:106,25:0.19:131
chr4	100212173	rs13134764	A	T	1982.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.982;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=3.797;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.14;ReadPosRankSum=-1.008;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:31,100:0.76:131
chr4	100212197	rs4147531	G	A	5478.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.48;SOR=0.937;set=HC	GT:AD:AF:DP	1/1:0,126:1.00:126
chr4	100231602	rs28914783	C	T	558.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr4	100235053	rs1789882	A	G	16844.77	.	AC=2;AF=1.00;AN=2;DB;DP=602;set=Intersection	GT:AD:AF:DP	1/1:0,597:1.00:597
chr4	100239319	rs1229984	T	C	6262.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr4	100258054	rs1693453	C	A	12156.77	.	AC=2;AF=1.00;AN=2;DB;DP=473;set=Intersection	GT:AD:AF:DP	1/1:3,461:0.99:464
chr4	100258154	rs138244919	C	T	3307.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr4	100260669	rs5860576	GCCC	G	1219.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr4	100260681	rs1975438	C	A	1310.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr4	100266478	rs70956000	CA	C	1342.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr4	100266483	rs200651908	A	G	1351.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr4	100268190	rs283413	A	C	2786.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr4	100334449	rs17588403	T	A	1336.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:2,45:0.96:47
chr4	100341643	rs1154460	G	A	1325.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr4	100356179	rs1154469	C	T	3920.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr4	100356337	rs1154470	G	A	5805.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr4	100738035	rs715239	G	T	1454.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr4	100757048	rs3733463	G	A	1402.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr4	100784875	rs61359294	G	GT	105.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.206;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=5.782;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=-0.748;QD=3.52;ReadPosRankSum=-0.424;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:18,12:0.40:30
chr4	100784980	rs3737484	C	T	1412.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr4	100805207	rs6532835	C	A	973.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr4	100829746	rs7676564	T	C	319.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr4	100870182	rs61203457	T	C	9237.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chr4	100870375	rs2276939	T	G	886.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr4	100871152	rs73832925	C	T	4779.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr4	101109161	rs3749604	G	C	8580.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:2,327:0.99:329
chr4	101337270	rs373987562	CAT	C	92.73	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:14,5:0.26:19
chr4	101338217	rs3733437	T	C	2049.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr4	101343979	rs71878999	CT	C	874.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.287;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.72;MQRankSum=0.545;QD=31.24;ReadPosRankSum=2.066;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:2,26:0.93:28
chr4	101368501	rs1157181	A	G	678.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr4	101961825	rs139637703	AT	A	69.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.221;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.39;MQRankSum=2.443;QD=1.52;ReadPosRankSum=-0.489;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:34,12:0.26:46
chr4	102014919	rs41275733	T	G	1961.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr4	102015143	rs41275735	C	G	521.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	102020924	rs3729663	C	T	607.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr4	102171591	rs2583404	T	G	1075.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr4	102171606	rs2850958	A	G	705.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr4	102251501	rs28664200	T	C	766.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:1,29:0.97:30
chr4	102267821	rs2850327	AA	CG	8311.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr4	102268034	rs3974660	A	ACGC,ACGCCGC	6610.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=271;set=Intersection	GT:AF:DP	1/2:0.09,0.89:158
chr4	102642453	rs10856962	T	C	1814.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr4	102642526	rs12506517	T	C	4362.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr4	102750922	rs17266594	T	C	1361.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr4	102751076	rs10516487	G	A	4519.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:2,168:0.99:170
chr4	102751276	rs10516486	C	T	4304.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr4	102751401	rs58497383	GTTT	G	1825.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.674;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.73;MQRankSum=0.381;QD=35.80;ReadPosRankSum=-0.332;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:1,50:0.98:51
chr4	102791905	rs10516483	C	G	1270.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr4	102839287	rs3733197	G	A	5904.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:2,224:0.99:226
chr4	102839362	rs3733198	A	T	1104.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.746;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=21.66;ReadPosRankSum=1.329;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:1,50:0.98:51
chr4	102942765	rs139919861	T	TTA	276.74	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	102965043	rs3113676	T	C	1794.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr4	103174491	rs151370	A	G	5718.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr4	103188709	rs13107325	C	T	6494.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr4	103228830	rs13105581	C	T	2218.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:1,79:0.99:80
chr4	103458888	rs3830689	TCA	T	945.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr4	103594918	rs227276	T	C	1052.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr4	103594938	rs227277	G	A	1504.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr4	103610872	rs227365	A	G	1521.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr4	103611845	rs227368	C	T	9588.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	1/1:4,372:0.99:376
chr4	103612018	rs227369	G	T	1701.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:2,43:0.96:45
chr4	103732704	rs201561589	T	TG	635.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	103911069	rs2715591	C	A	941.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr4	104066176	.	CA	C	66.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.843;ClippingRankSum=0.000;DP=18;ExcessHet=3.0103;FS=5.614;MLEAC=1;MLEAF=0.500;MQ=60.60;MQRankSum=1.230;QD=3.71;ReadPosRankSum=0.935;SOR=0.086;set=HC	GT:AD:AF:DP	0/1:10,8:0.44:18
chr4	104068855	.	AT	A	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.586;ClippingRankSum=0.000;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.87;ReadPosRankSum=0.579;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:30,10:0.25:40
chr4	105393320	rs4282179	T	C	351.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.98;SOR=4.977;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	105393329	rs10693247	C	CT	323.82	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.379;ClippingRankSum=0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.98;ReadPosRankSum=1.741;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:1,11:0.92:12
chr4	105393361	rs4413407	A	G	659.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.99;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr4	106157949	.	T	C	8373.77	.	AC=2;AF=1.00;AN=2;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr4	106474096	rs6533206	T	C	1113.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr4	106819053	rs34712979	G	A	2591.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr4	106879579	rs73836924	A	G	17007.77	.	AC=2;AF=1.00;AN=2;DB;DP=643;set=Intersection	GT:AD:AF:DP	1/1:6,628:0.99:634
chr4	106880445	rs28560134	A	G	284.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	107037630	rs78488187	C	T	594.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr4	107158823	rs11729801	C	T	2370.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr4	107163773	rs9996386	T	C	573.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr4	107168431	rs3775091	G	C	5388.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr4	107171647	rs41277029	G	A	395.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr4	107279518	rs75431821	T	C	3417.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr4	107288117	rs3018064	T	A	667.79	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.460;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.73;ReadPosRankSum=-0.046;SOR=0.368;set=HC	GT:AD:AF:DP	1/1:2,25:0.93:27
chr4	107288449	rs2949646	G	A	4124.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr4	108581002	rs11291153	GC	G	1195.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr4	108608100	rs45502094	CTCTAACACT	C	2246.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr4	108615226	rs371693146	CT	C	1847.73	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr4	108622169	rs71590193	A	AT	1657.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr4	108641169	rs2074372	C	G	3556.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr4	108641300	rs973126	T	C	10620.77	.	AC=2;AF=1.00;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	1/1:0,395:1.00:395
chr4	108641464	rs1319253	AA	GC	2112.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr4	108926170	rs3775973	T	G	771.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr4	108931039	rs4956145	T	C	3564.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr4	108935770	rs7677408	T	C	1118.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.523;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=0.716;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.95;ReadPosRankSum=-0.364;SOR=0.822;set=HC	GT:AD:AF:DP	0/1:43,82:0.66:125
chr4	108935871	rs4956147	G	A	661.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr4	108944579	rs4956032	C	T	4660.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr4	108944821	rs4956033	C	T	1154.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr4	108944846	rs4956034	A	G	451.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	108969590	rs4245927	A	G	1043.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:1,34:0.97:35
chr4	108985388	rs4613638	A	G	3514.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr4	108991979	rs2276335	C	T	1049.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr4	108999300	rs4956156	G	T	4149.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:1,151:0.99:152
chr4	108999366	rs4956157	G	A	9129.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:0,336:1.00:336
chr4	109000536	rs6819640	T	C	316.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	109002986	rs7681524	T	C	350.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	109010207	rs16996935	A	G	944.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr4	109461985	rs17583662	A	G	4154.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:2,156:0.99:158
chr4	109576843	rs2851380	G	T	2175.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr4	109588238	rs2851374	G	C	401.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr4	109664819	rs6533381	T	C	1266.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr4	109669319	rs33958723	TA	T	30.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.461;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.43;ReadPosRankSum=-2.425;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:56,15:0.21:71
chr4	109735133	rs2305436	T	C	1615.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr4	109735146	rs2305435	T	G	1359.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.86;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr4	109735209	rs11733727	T	C	201.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	109766177	rs10015534	G	C	452.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr4	109766290	rs11098004	T	G	3593.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr4	109767453	rs5860952	C	CA	7645.73	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr4	109769899	rs13135591	C	T	2767.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr4	109790346	.	C	CAATAAATA	2489.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.800;ClippingRankSum=0.000;DP=123;ExcessHet=3.0103;FS=3.220;MLEAC=2;MLEAF=1.000;MQ=60.18;MQRankSum=0.325;QD=40.16;ReadPosRankSum=0.519;SOR=2.080;set=HC	GT:AD:AF:DP	1/1:2,60:0.97:62
chr4	109810573	rs375294708	AT	A	427.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.900;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=0.744;QD=11.56;ReadPosRankSum=-0.345;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:5,32:0.86:37
chr4	109842152	rs72668372	T	C	1046.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr4	109863599	.	C	CT	111.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.092;ClippingRankSum=0.000;DP=138;ExcessHet=3.0103;FS=16.997;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.732;QD=1.15;ReadPosRankSum=-0.916;SOR=0.074;set=HC	GT:AD:AF:DP	0/1:77,20:0.21:97
chr4	109931455	rs376144125	AC	A	997.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	109931457	rs4995475	C	T	1006.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	109969183	rs3096481	T	C	820.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr4	109969337	rs3108954	G	T	2529.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr4	109969456	rs3096482	T	A	376.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	110370867	rs13123618	C	T	443.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr4	110384047	rs70949082	G	GCTTTT	5341.73	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr4	110661937	rs551	G	A	1595.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr4	110670807	rs7441380	G	C	1345.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr4	110678925	rs11098044	T	C	160.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr4	110678979	rs146158558	T	TTTTAA	232.80	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr4	110679002	rs7437142	G	T	283.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.47;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	110681618	rs4382037	C	T	3882.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr4	110737389	rs2276326	T	C	1231.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr4	110737549	rs6828254	G	A	2385.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr4	110745095	rs13109228	G	A	152.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.83;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	110754499	rs12513108	T	C	4011.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr4	110758551	rs4698750	G	T	936.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr4	110758769	rs4698795	A	G	5893.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr4	110765361	rs7681770	T	G	5142.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr4	110788739	rs2347130	G	A	2224.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr4	110791361	rs2347131	G	A	5020.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr4	110791413	rs2347132	C	T	4510.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr4	110791543	rs2347133	C	T	4177.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr4	110881918	rs142257779	A	G	1546.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr4	110914427	rs4698803	A	T	1766.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr4	111437040	rs139525131	CAG	C	122.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.067;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=1.414;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.98;ReadPosRankSum=-0.810;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:53,9:0.15:62
chr4	111454153	rs671841	A	G	896.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr4	111482717	rs17623663	T	A	3422.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:1,122:0.99:123
chr4	111781650	rs10213399	C	T	557.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr4	113066831	rs10002700	G	A	348.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr4	113107829	rs371585740	CT	C	251.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.584;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=2.144;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.27;ReadPosRankSum=-1.706;SOR=0.453;set=HC	GT:AD:AF:DP	0/1:49,28:0.36:77
chr4	113178894	rs147158310	ATTTGT	A	322.75	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	113178966	.	T	TA	34.73	.	AC=1;AF=0.500;AN=2;DP=24;set=Intersection	GT:AD:AF:DP	0/1:15,6:0.29:21
chr4	113179077	rs4834247	C	T	499.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.65;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	113179080	rs4834248	A	T	499.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.43;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	113199075	rs701759	A	G	2316.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr4	113199691	rs6834298	C	T	741.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:2,26:0.93:28
chr4	113348634	.	A	G	1595.77	.	AC=2;AF=1.00;AN=2;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr4	113436044	rs901474	T	G	2689.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr4	113483446	rs6838559	C	A	865.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr4	113502707	rs58897804	T	G	378.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr4	113539969	rs7696816	T	C	3573.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:2,123:0.98:125
chr4	113545165	rs6853745	T	G	452.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	113549989	rs12054518	G	A	1075.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr4	113551181	.	G	GA	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.325;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.11;ReadPosRankSum=-0.337;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:27,8:0.23:35
chr4	113554385	rs13104310	A	T	315.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	113568126	.	TA	T	81.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.352;ClippingRankSum=0.000;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.21;ReadPosRankSum=0.781;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:24,13:0.35:37
chr4	113568743	rs71597609	A	ATTTTAATTAATTAGT	497.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.71;QD=41.48;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	113569135	rs13136737	G	T	5069.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr4	113570639	rs4513633	C	A	409.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	113578326	.	TTG	T	79	.	AC=1;AF=0.500;AN=2;BRF=0.47;FR=0.5000;HP=3;HapScore=2;MGOF=13;MMLQ=22;MQ=60.0;NF=3;NR=0;PP=79;QD=27.3333333333;SC=AGTCATAGTTTTGTGTGTGTG;SbPval=1.0;Source=Platypus;TC=8;TCF=6;TCR=2;TR=3;WE=113578335;WS=113578316;set=Platypus	GT:AD:AF:DP	0/1:5,3:0.38:8
chr4	114038675	.	C	T	2277.77	.	AC=2;AF=1.00;AN=2;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.47;SOR=2.133;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr4	114117472	rs2285710	C	T	5742.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr4	114117474	rs3214164	A	AT	5733.73	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr4	114117723	rs2285709	G	A	428.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	114185878	rs11452087	C	CA	196.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.056;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=2.038;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.57;ReadPosRankSum=2.357;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:10,16:0.62:26
chr4	114209691	rs29357	C	T	2986.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr4	114209732	rs29356	T	C	2205.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr4	114209763	rs29355	T	C	1500.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr4	114267023	rs9968405	G	A	7026.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr4	114286357	.	ATGTG	A,ATG	2739.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.163;ClippingRankSum=0.000;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=28.24;ReadPosRankSum=-0.855;SOR=0.635;set=HC	GT:AD:AF:DP	1/2:2,32,63:0.33,0.65:97
chr4	114310106	.	CTG	C	58	.	AC=1;AF=0.500;AN=2;BRF=0.47;FR=0.5000;HP=1;HapScore=2;MGOF=11;MMLQ=26;MQ=60.0;NF=1;NR=2;PP=58;QD=20.6666666667;SC=GCATGCATGCCTGTGTGTGTG;SbPval=0.23;Source=Platypus;TC=12;TCF=1;TCR=11;TR=3;WE=114310115;WS=114310096;set=Platypus	GT:AD:AF:DP	1/0:9,3:0.25:12
chr4	114426077	rs5861139	CA	C	909.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.541;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=6.124;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=13.58;ReadPosRankSum=-0.234;SOR=1.919;set=HC	GT:AD:AF:DP	1/1:8,59:0.88:67
chr4	114426315	rs4834348	G	T	1856.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr4	115544714	rs6851610	A	G	8124.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr4	115586696	rs4833463	A	G	545.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	115586972	.	CT	C	114.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.697;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=1.664;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.96;ReadPosRankSum=-0.524;SOR=0.377;set=HC	GT:AD:AF:DP	0/1:15,14:0.48:29
chr4	115589159	rs6831964	C	T	1039.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr4	115589302	rs11098261	A	G	4575.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr4	115748914	rs112501949	A	AT	98.25	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr4	115748918	rs74651225	A	T	143.94	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr4	115749005	rs6843860	C	T	530.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr4	115898522	rs13115130	A	T	887.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr4	118976252	rs75853426	G	C	1808.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr4	119035948	rs5861378	T	TC	7441.73	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:1,248:1.00:249
chr4	119064668	rs3749506	G	A	354.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:1,19:0.95:20
chr4	119154201	rs13138385	T	C	4004.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr4	119161619	rs641962	A	G	692.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr4	119174640	rs5861382	CT	C	206.75	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:1,14:0.93:15
chr4	119200317	rs17594468	G	C	746.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr4	119203479	rs71608358	T	C	1571.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr4	119217114	rs788665	C	G	2142.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr4	119237348	rs2292597	T	C	6700.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr4	119259199	rs17516526	C	G	481.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	119273948	rs115419931	G	C	1595.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:2,62:0.97:64
chr4	119401424	rs7659489	T	A	4817.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:2,166:0.99:168
chr4	119409225	.	C	T	292	.	AC=1;AF=0.500;AN=2;BRF=0.53;FR=0.5000;HP=4;HapScore=2;MGOF=3;MMLQ=26;MQ=46.41;NF=20;NR=0;PP=292;QD=16.3385606274;SC=ATTACCAGACCCCCTCAAGTG;SbPval=1.0;Source=Platypus;TC=59;TCF=49;TCR=10;TR=20;WE=119409233;WS=119409215;set=Platypus	GT:AD:AF:DP	0/1:39,20:0.34:59
chr4	119414828	rs145087150	G	A	2605.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.26;QD=29.61;SOR=2.468;set=HC	GT:AD:AF:DP	1/1:0,88:1.00:88
chr4	119427957	rs28580297	C	G	507.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	119428006	rs201753340	A	G	679.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.61;QD=28.32;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr4	119431067	rs138515225	A	G	4530.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr4	119434892	rs200608654	G	A	1057.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.73;QD=31.11;SOR=1.418;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr4	119435061	rs147652632	C	T	1583.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.120;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.40;MQRankSum=-1.724;QD=25.96;ReadPosRankSum=-1.132;SOR=0.314;set=HC	GT:AD:AF:DP	1/1:1,60:0.98:61
chr4	119435614	rs200273909	T	TA	3326.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.205;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.31;MQRankSum=-2.231;QD=30.52;ReadPosRankSum=-0.486;SOR=0.712;set=HC	GT:AD:AF:DP	1/1:2,107:0.98:109
chr4	119435997	rs201367422	C	T	323.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.94;QD=24.91;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	119436130	rs72551018	G	A	1748.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.95;QD=26.50;SOR=1.284;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr4	119436487	rs2728182	T	C	167.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.383;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=3.802;MLEAC=1;MLEAF=0.500;MQ=44.44;MQRankSum=-2.200;QD=18.64;ReadPosRankSum=-1.085;SOR=2.584;set=HC	GT:AD:AF:DP	0/1:2,7:0.78:9
chr4	119436588	.	TGAA	T	457.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.12;QD=41.61;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	119436591	.	A	ATTTT	457.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.12;QD=41.61;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	119444456	rs28720014	G	A	5897.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr4	119465612	rs149328984	T	A	350.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.96;QD=23.38;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	119475430	rs2787272	G	A	576.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.44;QD=28.84;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr4	119606518	rs17323034	G	A	848.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr4	119608944	rs58763837	TTG	T	638.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.362;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.61;ReadPosRankSum=0.344;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:1,23:0.96:24
chr4	119609039	rs9968326	G	A	3633.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr4	119609182	.	CT	C	42.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.458;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.29;ReadPosRankSum=-1.796;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:22,11:0.33:33
chr4	119613381	rs11387432	C	CT	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=2.813;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.14;ReadPosRankSum=-1.999;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:12,7:0.37:19
chr4	119625273	rs298995	G	A	431.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	119631160	rs11931194	C	T	5184.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr4	119665345	rs28627331	T	C	893.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr4	119689549	rs11412557	C	CT	343.80	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.054;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.05;ReadPosRankSum=0.283;SOR=0.950;set=HC	GT:AD:AF:DP	0/1:9,29:0.76:38
chr4	119736598	rs6843524	C	T	895.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr4	119736796	rs2389688	A	C	6362.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr4	119737860	rs3775840	G	A	5662.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr4	119737885	rs3775839	T	C	6368.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr4	119944566	rs138607209	C	CT	2047.73	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr4	119947961	rs70944826	AAAG	A	15404.73	.	AC=2;AF=1.00;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	1/1:1,345:1.00:346
chr4	119947985	rs12645298	G	C	9272.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	1/1:1,336:1.00:337
chr4	119950975	rs34286363	A	ATT	852.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.290;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.09;ReadPosRankSum=2.123;SOR=0.591;set=HC	GT:AD:AF:DP	0/1:12,41:0.77:53
chr4	119951647	rs7698598	A	G	14356.77	.	AC=2;AF=1.00;AN=2;DB;DP=513;set=Intersection	GT:AD:AF:DP	1/1:1,506:1.00:507
chr4	120071926	rs6853794	T	C	801.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr4	120072233	rs6828875	G	C	1517.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.02;SOR=3.442;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr4	120072238	rs6828349	A	G	1309.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.16;SOR=3.841;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr4	120079159	rs11721566	A	G	2383.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr4	120133549	rs12644283	T	G	11620.77	.	AC=2;AF=1.00;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	1/1:0,435:1.00:435
chr4	120133712	rs6851130	G	A	1179.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr4	120177522	rs7668372	G	T	3162.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr4	120177708	rs7668423	C	T	1343.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr4	120181724	rs35372126	A	G	8963.77	.	AC=2;AF=1.00;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	1/1:0,351:1.00:351
chr4	120194718	rs35610634	G	GT	2535.73	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:4,119:0.97:123
chr4	120220085	rs111948904	A	AAAAC	1561.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr4	120221425	rs62328407	C	G	6908.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr4	120241849	rs4834770	A	G	1042.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr4	120241902	rs1799883	T	C	1700.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.57;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr4	120243336	rs5861422	TA	T	6528.73	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr4	120243389	rs5861423	A	ACTACT	2745.73	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr4	120243417	rs5861424	T	TTC	1447.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr4	120243419	rs1973598	A	T	1456.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr4	120265438	rs4440203	A	G	1152.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr4	120314562	rs181554690	T	C	1355.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr4	120463856	rs2622497	A	C	1598.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:1,54:0.98:55
chr4	120528327	rs3733526	G	A	2977.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr4	120528524	rs10536068	ATCT	A	1601.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr4	120550059	rs11342908	GC	G	4084.73	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr4	120550125	rs10639733	A	AGGC	2816.73	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:14,121:0.90:135
chr4	120550144	rs2953291	A	G	5986.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:2,144:0.99:146
chr4	120983259	rs2908989	T	C	11517.77	.	AC=2;AF=1.00;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	1/1:0,426:1.00:426
chr4	121737767	rs2136998	G	A	2202.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr4	121828519	rs1901135	C	T	1506.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr4	121957734	rs1397645	T	C	6981.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:1,263:1.00:264
chr4	121958091	rs3733558	T	G	9034.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:1,322:1.00:323
chr4	121958187	rs3822230	A	G	9968.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:1,380:1.00:381
chr4	121958697	rs3733560	G	A	4806.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr4	121961295	rs3836716	A	AT	91.82	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr4	121966807	rs2276959	C	T	2793.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr4	122053910	.	CA	C	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.536;ClippingRankSum=-0.000;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.98;ReadPosRankSum=-0.559;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:6,7:0.54:13
chr4	122137662	rs7663440	T	G	1645.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr4	122148787	rs2044970	A	G	557.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	122251500	rs56169343	C	T	2362.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr4	122255895	rs56351803	A	G	817.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr4	122257942	rs4558890	A	C	8933.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.35;SOR=1.226;set=HC	GT:AD:AF:DP	1/1:0,197:1.00:197
chr4	122257950	rs2302309	A	G	9400.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.93;SOR=1.216;set=HC	GT:AD:AF:DP	1/1:0,219:1.00:219
chr4	122261495	rs2276956	C	A	1092.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr4	122261785	rs2276955	C	T	3966.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr4	122590883	rs71599153	T	TA	1185.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.033;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=1.598;QD=8.92;ReadPosRankSum=1.556;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:52,81:0.61:133
chr4	122599249	rs3756281	G	A	995.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr4	122599755	rs3733649	T	C	1169.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr4	122681373	rs4342205	T	C	2230.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr4	122683007	rs4370153	G	A	4167.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr4	122687238	rs13108419	A	G	3804.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:2,141:0.99:143
chr4	122687491	rs4833772	G	C	668.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr4	122722693	rs3811742	C	G	7580.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr4	122732899	rs4295291	A	G	372.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	122735225	rs141260260	C	CTTA	1196.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr4	122737487	rs71985276	C	CT	81.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.066;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.42;MQRankSum=2.151;QD=2.15;ReadPosRankSum=-0.204;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:26,12:0.32:38
chr4	122739183	rs3217772	C	G	3403.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr4	122742217	rs769242	T	C	5171.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr4	122749436	rs2706793	G	T	3784.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr4	122760968	rs12510839	G	A	1083.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr4	122776067	rs4833236	A	G	937.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr4	122791601	rs2271176	G	C	2984.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr4	122824052	rs11732666	C	T	6215.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr4	122828794	rs951974	T	G	329.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	122831281	rs1507993	C	T	2056.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr4	122833314	rs906496	C	T	1844.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr4	122833379	rs906495	T	C	416.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr4	122854116	rs13121031	G	C	7683.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:2,297:0.99:299
chr4	123108762	rs7670081	G	A	524.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	123109034	.	A	AT	79.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.745;ClippingRankSum=0.000;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.74;ReadPosRankSum=-1.441;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:87,21:0.19:108
chr4	123128669	.	CT	C	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.377;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;FS=1.286;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.78;ReadPosRankSum=0.618;SOR=1.101;set=HC	GT:AD:AF:DP	0/1:33,13:0.28:46
chr4	123140739	rs6534345	G	C	4908.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr4	123175900	rs66570627	G	A	1991.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr4	123185682	rs7664976	C	A	664.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	123188206	.	A	ATTTTTTTTTTTTT	35.19	.	AC=2;AF=1.00;AN=2;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.03;QD=11.73;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr4	123197297	rs186282697	T	C	112.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr4	123277226	rs34791626	G	GT	1742.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr4	123536963	rs4833837	G	A	1726.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr4	123662997	rs309368	A	T	2782.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr4	123664204	rs309370	G	A	8943.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:0,329:1.00:329
chr4	123664427	rs13135766	G	C	6088.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:4,219:0.98:223
chr4	123664446	rs13135778	G	A	6246.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:4,225:0.98:229
chr4	123664457	rs13135445	C	T	6438.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:4,235:0.98:239
chr4	123664919	rs13102440	A	G	6685.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr4	123748616	rs2922979	C	G	2774.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:2,99:0.98:101
chr4	123838758	rs12648093	A	G	2579.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr4	123843716	rs13134412	T	C	4610.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:2,172:0.99:174
chr4	123854495	rs1563706	T	C	741.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr4	123868279	rs11098682	G	T	519.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	123949556	rs1472949	G	A	2910.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr4	124323738	rs300574	T	C	1995.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr4	126238924	rs6847454	A	T	11819.77	.	AC=2;AF=1.00;AN=2;DB;DP=439;set=Intersection	GT:AD:AF:DP	1/1:2,430:1.00:432
chr4	126239986	rs1039808	C	T	10143.77	.	AC=2;AF=1.00;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	1/1:0,367:1.00:367
chr4	126240510	rs2940779	T	C	10239.77	.	AC=2;AF=1.00;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	1/1:0,364:1.00:364
chr4	126241871	rs2710555	C	T	10054.77	.	AC=2;AF=1.00;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	1/1:0,370:1.00:370
chr4	126315034	rs925243	T	C	4198.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr4	126315282	rs925242	A	G	542.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	126329789	rs958415	T	C	3225.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr4	126335978	rs4605670	G	C	1201.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr4	126336990	rs10010000	G	T	1928.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr4	126337555	rs7675556	A	G	1630.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr4	126355609	rs7656135	T	G	3815.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr4	126355671	rs80234380	C	T	1076.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr4	126369872	rs988863	G	C	13680.77	.	AC=2;AF=1.00;AN=2;DB;DP=500;set=Intersection	GT:AD:AF:DP	1/1:0,490:1.00:490
chr4	126373789	rs12650153	G	A	4481.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr4	126384905	rs10010645	A	C	386.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr4	126389627	rs6814158	A	G	3503.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr4	126411594	rs62312781	G	A	5935.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr4	126428551	rs187964864	T	C	168.81	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	128817905	.	G	GT	70.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.657;ClippingRankSum=0.000;DP=62;ExcessHet=3.0103;FS=2.786;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.22;ReadPosRankSum=0.168;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:45,13:0.22:58
chr4	129043593	.	G	GT	115.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.542;ClippingRankSum=0.000;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.70;ReadPosRankSum=-0.379;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:51,17:0.25:68
chr4	129776983	rs76983300	C	CT	790.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:2,36:0.95:38
chr4	129924852	rs3099900	T	C	2345.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr4	129924977	rs3113487	C	A	7067.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:1,270:1.00:271
chr4	129961179	rs3113489	A	G	744.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr4	129965026	rs1450727	T	C	376.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	130023759	rs1757935	A	T	4669.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr4	130030652	rs337277	A	G	4856.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr4	133367588	rs1827132	T	C	1971.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr4	133367655	rs1827133	G	A	1817.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr4	133368361	rs70948202	T	TC	1407.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr4	134074058	rs3749589	A	G	1423.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr4	139100372	rs4479754	C	T	674.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr4	139103366	rs10016559	A	G	720.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr4	139140388	rs10025342	G	A	8228.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr4	139140494	rs6838248	G	C	6113.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr4	139153317	rs6823642	T	A	942.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr4	139993175	rs17322140	G	A	2214.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr4	140005294	rs4863628	A	G	18164.77	.	AC=2;AF=1.00;AN=2;DB;DP=670;set=Intersection	GT:AD:AF:DP	1/1:0,668:1.00:668
chr4	140039107	.	C	CAA	85.73	.	AC=1;AF=0.500;AN=2;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=8.57;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:4,6:0.60:10
chr4	140187661	.	CT	C	62.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.111;ClippingRankSum=0.000;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.56;ReadPosRankSum=-0.969;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:91,22:0.19:113
chr4	140188094	rs3208941	C	T	10852.77	.	AC=2;AF=1.00;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	1/1:2,402:1.00:404
chr4	140216412	rs6816703	C	T	724.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr4	140263849	rs11944434	G	A	1098.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr4	140265237	rs116034207	G	A	183.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	140270875	rs2044810	G	A	982.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.73;SOR=2.030;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	140308984	rs998310	C	A	1329.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr4	140325805	.	A	T	254.78	.	AC=2;AF=1.00;AN=2;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	140375296	rs13128486	C	G	1499.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:1,54:0.98:55
chr4	140417471	rs4863655	G	T	2413.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:1,91:0.99:92
chr4	140417671	rs4863656	G	C	3738.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr4	140432775	.	C	A	187.77	.	AC=1;AF=0.500;AN=2;DP=82;set=Intersection	GT:AD:AF:DP	0/1:65,17:0.21:82
chr4	140587259	rs72152182	TGC	T	1768.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.28;QD=42.11;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr4	140587263	.	C	T	663	.	AC=2;AF=1.00;AN=2;BRF=0.33;FR=1.0000;HP=2;HapScore=1;MGOF=5;MMLQ=24;MQ=61.14;NF=11;NR=23;PP=663;QD=20.522682722;SC=TGTGTGTGCGCGTGTGTGCGT;SbPval=0.56;Source=Platypus;TC=34;TCF=11;TCR=23;TR=34;WE=140587282;WS=140587253;set=Platypus	GT:AD:AF:DP	1/1:0,34:1.00:34
chr4	140587268	.	GTGCGTGT	G	1278	.	AC=2;AF=1.00;AN=2;BRF=0.33;FR=1.0000;HP=2;HapScore=1;MGOF=5;MMLQ=28;MQ=60.63;NF=1;NR=20;PP=1278;QD=61.8571428571;SC=GTGCGCGTGTGTGCGTGTGTG;SbPval=0.62;Source=Platypus;TC=22;TCF=1;TCR=21;TR=21;WE=140587282;WS=140587253;set=Platypus	GT:AD:AF:DP	1/1:1,21:0.95:22
chr4	140587270	.	GCGTGT	G	1736.73	.	AC=2;AF=1.00;AN=2;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.41;QD=45.70;SOR=1.493;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr4	140616462	rs2646077	G	A	1645.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr4	140625323	rs925424	A	G	5823.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr4	140640703	rs61747885	G	T	7370.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:1,269:1.00:270
chr4	140651584	rs5862430	TCTG	T	9854.73	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr4	140809656	rs6839194	C	A	2239.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:2,83:0.98:85
chr4	140809710	rs3775241	C	G	3621.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr4	140810334	rs3733381	T	C	6540.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr4	140810637	rs11100342	C	T	5692.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;MQ=59.97;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr4	140810700	rs11729794	C	T	4922.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr4	140811063	.	TTGCTGCTGCTGC	T	3000	.	AC=2;AF=1.00;AN=2;FR=1.0000;HP=1;HapScore=1;MGOF=15;MMLQ=24;NF=15;NR=70;PP=3000;QD=20;SC=TTGAGTGCTGTTGCTGCTGCT;Source=Platypus;TCF=29;TR=85;WE=140811104;WS=140811053;set=Platypus	GT:AD:AF:DP	1/1:68,85:0.56:153
chr4	140811083	rs373804063	GC	G	7924.73	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=1.135;ClippingRankSum=0.000;DB;DP=262;ExcessHet=3.0103;FS=3.948;MLEAC=2;MLEAF=1.000;MQ=62.55;MQRankSum=2.322;QD=35.38;ReadPosRankSum=-0.423;SOR=0.461;set=HC	GT:AD:AF:DP	1/1:13,211:0.94:224
chr4	140811085	rs58287721	TGCTGCTGCTGC	T	7284.86	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.355;ClippingRankSum=0.000;DB;DP=265;ExcessHet=3.0103;FS=2.463;MLEAC=1;MLEAF=0.500;MQ=62.52;MQRankSum=2.846;QD=33.57;ReadPosRankSum=0.684;SOR=0.375;set=HC	GT:AD:AF:DP	0/1:19,198:0.91:217
chr4	140811096	.	C	T	2965	.	AC=2;AF=1.00;AN=2;FR=1.0000;HP=1;HapScore=1;MGOF=14;MMLQ=28;NF=81;NR=82;PP=2965;QD=20;SC=GCTGCTGCTGCTGCTGCTGCT;SbPval=0.5;Source=Platypus;TC=201;TCF=101;TCR=100;TR=163;WE=140811104;WS=140811053;set=Platypus	GT:AD:AF:DP	1/1:38,163:0.81:201
chr4	140811135	rs3733382	T	C	10340.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr4	141264871	rs16998462	A	G	3783.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:1,139:0.99:140
chr4	141290574	rs2668577	C	T	1412.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr4	141317068	rs12513290	G	A	3307.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr4	141331177	.	T	C	509.77	.	AC=2;AF=1.00;AN=2;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	141364579	rs149678837	CTTAT	C	1267.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr4	141371320	rs11937380	T	A	539.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr4	141377690	rs67200893	G	A	1365.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr4	141380783	.	G	GA	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.707;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=1.734;QD=1.40;ReadPosRankSum=0.521;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:22,7:0.24:29
chr4	141382963	rs141138404	AATT	A	817.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr4	141383034	.	TAC	T	44.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.073;ClippingRankSum=0.000;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.58;ReadPosRankSum=-1.235;SOR=0.883;set=HC	GT:AD:AF:DP	0/1:65,12:0.16:77
chr4	141383121	rs12505221	A	T	4385.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr4	141543997	rs1560440	G	A	6753.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr4	141545564	rs5862491	G	GA	4327.73	.	AC=2;AF=1.00;AN=2;DB;DP=210;MQ=60.05;set=Intersection	GT:AD:AF:DP	1/1:3,171:0.98:174
chr4	141545653	rs5862492	GCAAA	G	1078.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr4	141592206	rs4956473	A	G	350.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	141600320	rs4956329	A	G	2811.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr4	141607679	rs13112073	C	T	1500.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr4	141677006	rs70943501	A	AG	2683.73	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr4	141771715	rs374724826	GGT	G	98.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.660;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.19;ReadPosRankSum=0.451;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:36,9:0.20:45
chr4	141866754	rs71584389	ATACATATATATAC	A	658.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=63.71;QD=41.17;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	141868736	rs2321687	G	T	1319.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr4	141869062	rs6857782	C	T	1072.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr4	141870648	rs4956494	G	A	1213.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr4	141924720	.	TACACACACACACAC	T,TAC	2304.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.476;ClippingRankSum=0.000;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=39.06;ReadPosRankSum=-0.088;SOR=0.622;set=HC	GT:AD:AF:DP	1/2:1,18,40:0.31,0.68:59
chr4	141927365	rs138771695	CATATATATACACATATATATGTGTATGTAT	C	2670.73	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr4	141940074	rs4245936	T	C	1679.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr4	141940234	.	A	G	336	.	AC=2;AF=1.00;AN=2;BRF=0.0;FR=1.0000;HP=2;HapScore=2;MGOF=226;MMLQ=28;MQ=60.0;NF=3;NR=13;PP=336;QD=23.1732007842;SC=ATATATATATATGGAACTTTA;SbPval=0.59;Source=Platypus;TC=16;TCF=3;TCR=13;TR=16;WE=141940242;WS=141940224;set=Platypus	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	142000004	.	T	C	61	.	AC=1;AF=0.500;AN=2;BRF=0.69;FR=0.5950;HP=2;HapScore=2;MGOF=66;MMLQ=25;MQ=60.0;NF=4;NR=0;PP=61;QD=23.9428031368;SC=CACACACACATACATACATAC;SbPval=1.0;Source=Platypus;TC=4;TCF=4;TCR=0;TR=4;WE=142000012;WS=141999994;set=Platypus	GT:AD:AF:DP	1/0:0,4:1.00:4
chr4	143003155	rs11446749	G	GA	1740.73	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr4	143007197	rs336325	C	T	2342.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr4	143007419	rs336324	A	G	1078.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr4	143007460	rs336323	T	G	558.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	143044666	rs2645786	A	C	1041.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr4	143130034	rs1907123	A	T	4390.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr4	143130219	rs1994217	T	A	1537.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr4	143181747	rs66750380	AT	A	102.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.231;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=1.031;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.45;ReadPosRankSum=0.632;SOR=0.926;set=HC	GT:AD:AF:DP	0/1:50,21:0.30:71
chr4	143181748	rs1907111	T	A	811.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.327;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.873;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.54;ReadPosRankSum=0.968;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:29,48:0.62:77
chr4	143192086	.	TTG	T	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.282;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=2.602;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.94;ReadPosRankSum=-4.025;SOR=0.138;set=HC	GT:AD:AF:DP	0/1:14,6:0.30:20
chr4	143226768	rs2627808	G	T	3473.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr4	143226784	rs2636640	G	A	2759.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr4	143268528	rs882004	T	A	1505.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr4	143324036	rs1982965	T	C	1602.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr4	143324094	rs1982966	G	A	4115.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr4	143326312	rs138973882	AAGAGAG	AAG,A	1284.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=36;set=Intersection	GT:AF:DP	1/1:1.00:32
chr4	143344785	rs3775712	T	G	891.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr4	143348523	rs3775717	A	G	356.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	143348680	rs3775718	C	T	1327.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr4	144124492	rs4234886	G	A	479.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	144125549	.	CT	C	89.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.034;ClippingRankSum=0.000;DP=84;ExcessHet=3.0103;FS=1.125;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.553;QD=1.30;ReadPosRankSum=-0.169;SOR=0.906;set=HC	GT:AD:AF:DP	0/1:52,17:0.25:69
chr4	144135718	rs4285045	G	A	7554.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:2,284:0.99:286
chr4	144136193	rs10000911	T	G	606.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr4	144264722	rs300919	T	C	5990.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr4	144390076	.	C	CA	97.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.066;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.07;ReadPosRankSum=2.206;SOR=0.426;set=HC	GT:AD:AF:DP	0/1:15,9:0.38:24
chr4	144442611	rs11100790	T	C	7538.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:2,283:0.99:285
chr4	144442735	rs11541117	C	T	7305.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr4	144445789	rs6857360	C	T	478.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	144446519	rs2292362	C	G	2244.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr4	144456124	rs6818251	A	G	3318.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr4	144467104	rs13139128	T	C	1814.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr4	144471460	rs6810805	T	C	266.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	144618610	rs1034494	G	C	4287.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr4	144801662	rs1132785	C	T	8608.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr4	144809800	rs143390057	C	A	7343.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:2,284:0.99:286
chr4	144811428	rs4095436	A	G	674.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr4	144811470	rs4095435	A	G	308.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr4	144824194	rs138724961	T	C	4930.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.428;ClippingRankSum=0.000;DB;DP=827;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.44;MQRankSum=-26.844;QD=5.98;ReadPosRankSum=-0.178;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:532,293:0.36:825
chr4	144824235	rs79701609	C	T	5068.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.080;ClippingRankSum=0.000;DB;DP=781;ExcessHet=3.0103;FS=0.537;MLEAC=1;MLEAF=0.500;MQ=51.53;MQRankSum=-26.661;QD=6.50;ReadPosRankSum=-0.241;SOR=0.604;set=HC	GT:AD:AF:DP	0/1:478,302:0.39:780
chr4	144824269	rs1899967	C	T	19124.77	.	AC=2;AF=1.00;AN=2;DB;DP=510;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.74;QD=37.57;SOR=1.106;set=HC	GT:AD:AF:DP	1/1:0,509:1.00:509
chr4	144824269	.	CTCCC	TTCCC,TTCCT	2944	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.54;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=19;MMLQ=24;MQ=50.16;NF=133,84;NR=219,146;PP=1285,2944;QD=3.74935003565;SC=CAGAAAATAACTCCCTGCTAC;SbPval=0.5;Source=Platypus;TC=354;TCF=133;TCR=221;TR=352,230;WE=144824281;WS=144824259;set=Platypus	GT:AF:DP	0/1:0.99:354
chr4	144824273	rs6818201	C	T	6950.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.124;ClippingRankSum=0.000;DB;DP=478;ExcessHet=3.0103;FS=1.164;MLEAC=1;MLEAF=0.500;MQ=51.90;MQRankSum=19.664;QD=14.57;ReadPosRankSum=-0.646;SOR=0.791;set=HC	GT:AD:AF:DP	0/1:171,306:0.64:477
chr4	144824308	rs202179013	TG	CC	2645.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.726;ClippingRankSum=0.000;DB;DP=248;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=52.56;MQRankSum=-12.918;QD=10.67;ReadPosRankSum=-1.840;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:171,77:0.31:248
chr4	144824346	rs4091835	T	G	277.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.558;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.05;MQRankSum=-6.235;QD=2.81;ReadPosRankSum=-4.750;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:80,19:0.19:99
chr4	144917514	rs1980037	A	C	2604.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr4	144918867	rs1473055	A	G	2944.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr4	144918893	rs4835126	A	G	3080.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.39;SOR=2.082;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr4	144918900	rs1849110	G	A	2954.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.10;SOR=2.070;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr4	144921607	rs1849119	C	T	1509.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr4	144922436	rs201662569	T	G	951.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.357;ClippingRankSum=0.000;DB;DP=427;ExcessHet=3.0103;FS=1.362;MLEAC=1;MLEAF=0.500;MQ=52.96;MQRankSum=-8.915;QD=2.27;ReadPosRankSum=-4.325;SOR=0.574;set=HC	GT:AD:AF:DP	0/1:329,90:0.21:419
chr4	144922549	rs6537239	G	A	1680.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr4	144938033	rs5862681	A	AT	1127.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.27;QD=34.17;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr4	144938047	rs12503691	C	T	863.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.35;QD=30.85;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr4	144938081	rs28373876	C	T	756.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.02;QD=31.53;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr4	144938120	rs4561879	TG	CC	982.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=48.09;QD=42.73;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	145035788	rs6857303	G	A	3274.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr4	145040962	rs6857144	CA	GT	2941.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr4	145041686	rs4867	A	G	5138.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr4	145041741	rs4449373	T	G	4177.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr4	145061822	rs71590434	CA	C	4294.73	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr4	145579907	rs6537301	G	A	2946.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr4	145916505	rs35428482	AT	A	742.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr4	145974935	.	GA	G	57.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.111;ClippingRankSum=0.000;DP=64;ExcessHet=3.0103;FS=2.774;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.03;ReadPosRankSum=0.268;SOR=1.104;set=HC	GT:AD:AF:DP	0/1:43,13:0.23:56
chr4	146042445	rs10519725	G	C	1558.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr4	146046138	rs4835203	T	C	291.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	146048554	rs4148234	T	C	2399.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:2,93:0.98:95
chr4	146048583	rs1378314	T	G	3072.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr4	146065006	rs9991890	C	T	2133.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr4	146076632	.	T	TA	32.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.932;ClippingRankSum=0.000;DP=108;ExcessHet=3.0103;FS=1.009;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.33;ReadPosRankSum=1.656;SOR=0.546;set=HC	GT:AD:AF:DP	0/1:83,17:0.17:100
chr4	146077132	rs36225838	C	T	1299.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr4	146086269	rs17726651	C	T	1009.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr4	146436286	rs377610507	CTG	C	173.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.036;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=3.245;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=0.000;QD=7.24;ReadPosRankSum=-0.739;SOR=1.942;set=HC	GT:AD:AF:DP	0/1:13,11:0.46:24
chr4	146475243	rs10715854	CT	C	82.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.873;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=5.591;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.469;QD=1.36;ReadPosRankSum=0.954;SOR=1.781;set=HC	GT:AD:AF:DP	0/1:42,19:0.31:61
chr4	146806762	rs200461563	CAGAGAGAG	C,CAGAG	672.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=37.37;SOR=1.179;set=HC	GT:AD:AF:DP	1/2:0,7,11:0.39,0.61:18
chr4	147104263	rs919483	A	G	2630.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr4	147110652	rs17757715	C	T	298.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr4	147110891	rs7745	A	G	807.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr4	147177868	rs34063596	T	TC	2138.73	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr4	147213912	rs4516736	T	C	364.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	147214029	rs12711434	C	A	1556.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr4	148457005	.	C	CT	78.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.028;ClippingRankSum=0.000;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=2.036;QD=0.67;ReadPosRankSum=-1.900;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:97,21:0.18:118
chr4	148560210	rs34852471	G	A	4227.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr4	148560357	rs2654935	C	T	659.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr4	148578917	.	TA	T	103.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.009;ClippingRankSum=0.000;DP=162;ExcessHet=3.0103;FS=0.814;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.66;ReadPosRankSum=0.348;SOR=0.543;set=HC	GT:AD:AF:DP	0/1:125,32:0.20:157
chr4	148589677	rs2718454	C	T	2979.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr4	148591769	rs2036502	G	T	3812.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr4	148601729	rs7666065	C	T	823.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr4	148778685	rs11410393	G	GT	335.06	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.439;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=2.473;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.57;ReadPosRankSum=-0.477;SOR=0.848;set=HC	GT:AD:AF:DP	1/1:3,20:0.87:23
chr4	148787669	rs4240341	G	A	73.28	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr4	148796464	rs7663294	C	G	1119.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr4	148800299	rs13147854	A	G	3513.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr4	148827697	rs35780665	T	TA	1503.73	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:3,73:0.96:76
chr4	148827747	rs12509618	A	C	3491.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:1,132:0.99:133
chr4	148827973	rs11099672	A	G	1203.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr4	148831070	rs4627844	A	G	2016.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr4	148985720	rs3775327	T	C	2332.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr4	149002016	rs10708334	AT	A	1311.73	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr4	149073555	rs2272089	C	T	775.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr4	149076195	rs7668847	A	G	427.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr4	149116035	rs4835500	A	G	1050.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr4	149356516	rs5525	A	G	5969.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr4	149357475	rs5522	C	T	8477.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:1,319:1.00:320
chr4	151161490	rs6838238	T	C	6202.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr4	151161502	rs6813035	G	T	6576.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr4	151168929	rs2359940	A	G	824.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr4	151177340	rs13152819	CC	TG	1804.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr4	151177428	rs13101461	C	G	691.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.24;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	151177432	rs13101258	A	C	691.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.24;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	151231371	rs1813134	T	C	2249.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr4	151408800	rs7674989	T	C	1487.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr4	151502697	rs35940180	T	TA	47.84	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:3,5:0.62:8
chr4	151505322	rs13105060	T	A	2929.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr4	151511715	rs4401437	T	G	973.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:1,37:0.97:38
chr4	151656589	rs1993109	C	T	1958.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr4	151683003	.	T	TA	30.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.520;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=1.379;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.67;ReadPosRankSum=-2.504;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:36,10:0.22:46
chr4	151765243	rs186080	G	A	5172.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr4	151829659	rs1201207	T	C	1084.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr4	152024326	rs4696658	T	G	1547.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr4	152048936	rs11099782	A	T	887.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:2,39:0.95:41
chr4	152053408	rs7664483	G	A	2304.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr4	152069406	rs150487703	TACACACACACACACAC	T	1092.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr4	152070633	rs3792611	T	A	3435.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.03;SOR=1.000;set=HC	GT:AD:AF:DP	1/1:0,132:1.00:132
chr4	152201053	rs36097019	G	A	2881.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr4	152201204	rs1875308	A	G	763.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr4	152201206	.	T	TAGGCAGGGCGGAAGGAAACCCAGGTCATGTCAGACTATCAAACCCGAAACAACTAG	67.82	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.892;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=16.628;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.83;ReadPosRankSum=-2.088;SOR=2.199;set=HC	GT:AD:AF:DP	0/1:22,2:0.08:24
chr4	152212486	rs13126069	C	T	5891.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr4	152212603	rs2407221	T	G	2643.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr4	152212704	rs13102005	T	A	487.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	152498875	rs200326017	A	G	5543.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr4	152583907	rs11378262	C	CT	509.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.557;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.09;ReadPosRankSum=-1.797;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:20,43:0.68:63
chr4	152609920	rs11292952	TA	T	79.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.534;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.86;ReadPosRankSum=-1.223;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:70,23:0.25:93
chr4	152626515	rs113829752	TA	T	66.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.034;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=7.667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.26;ReadPosRankSum=-2.044;SOR=0.073;set=HC	GT:AD:AF:DP	0/1:39,14:0.26:53
chr4	153549731	.	AAAAAAAAAAAAAAC	A	79.70	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DP=27;ExcessHet=3.0103;FS=3.680;MLEAC=1;MLEAF=0.500;MQ=58.49;MQRankSum=-0.000;QD=9.96;ReadPosRankSum=0.180;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:2,6:0.75:8
chr4	153565645	rs62320820	A	G	2740.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr4	153574119	rs76494567	A	G	411.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	153600872	rs79803668	A	G	1378.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr4	153690842	rs4696354	T	C	7195.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr4	153691316	rs34696355	G	A	10638.77	.	AC=2;AF=1.00;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	1/1:0,389:1.00:389
chr4	153750918	rs10010297	G	A	1925.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr4	153793489	rs35670437	CT	C	526.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr4	153802060	rs80127385	A	G	124.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr4	153870273	.	T	TAAGAAGAAGAAG	155.73	.	AC=1;AF=0.500;AN=2;DP=22;set=Intersection	GT:AD:AF:DP	0/1:3,6:0.67:9
chr4	153870276	rs28633792	T	G	1110.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=63.29;QD=41.14;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr4	153884092	.	G	GGT	993.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.241;ClippingRankSum=0.000;DP=86;ExcessHet=3.0103;FS=1.314;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=0.000;QD=16.03;ReadPosRankSum=0.626;SOR=0.515;set=HC	GT:AD:AF:DP	0/1:15,47:0.76:62
chr4	153889265	rs6535885	A	G	3144.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr4	153896358	rs3811833	C	T	9435.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	1/1:1,356:1.00:357
chr4	153897770	rs3811832	G	A	3664.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:1,130:0.99:131
chr4	154256251	rs111733088	T	C	574.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr4	154512437	rs17279148	A	G	1997.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr4	154513531	rs1371158	A	G	978.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr4	154513627	rs7669418	A	G	2919.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:2,108:0.98:110
chr4	154513722	rs7669741	C	T	4835.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:2,182:0.99:184
chr4	154513856	rs893628	G	C	1241.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr4	154514847	rs13109887	T	C	1099.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr4	154514918	rs17279217	T	C	4307.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr4	154514965	rs17370297	T	C	7889.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chr4	154517294	rs7690932	G	T	533.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr4	154519658	rs13118469	A	G	1096.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.87;SOR=2.215;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr4	154519666	rs13118949	G	C	1231.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.99;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr4	154519679	rs13145743	T	C	1433.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr4	154542161	rs3761657	C	A	99.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr4	154542814	rs7663417	G	T	865.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.266;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=3.871;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.74;ReadPosRankSum=0.391;SOR=2.517;set=HC	GT:AD:AF:DP	1/1:2,33:0.94:35
chr4	154544267	rs2289319	G	A	1292.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr4	154554183	rs3217466	TAAAA	T	1011.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;MQ=61.34;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr4	154557383	rs142471814	ATG	A	2700.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr4	154557405	rs3214684	CT	C	1698.73	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:4,89:0.96:93
chr4	154557616	rs34343821	C	T	5376.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr4	154624656	rs3804099	T	C	4608.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:6,181:0.97:187
chr4	154625409	rs3804100	T	C	8271.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr4	154631543	rs2405432	A	T	6970.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr4	154641489	rs1439166	T	C	1799.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr4	154644454	rs1456384	T	C	4676.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:1,166:0.99:167
chr4	154644537	rs10517577	T	C	9253.77	.	AC=2;AF=1.00;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	1/1:2,353:0.99:355
chr4	154669733	rs62325093	G	A	2343.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr4	154669993	rs145820112	C	CAAAA	610.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.630;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.38;MQRankSum=0.625;QD=30.54;ReadPosRankSum=-0.262;SOR=1.708;set=HC	GT:AD:AF:DP	1/1:1,19:0.95:20
chr4	154709856	rs6535952	A	C	3315.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr4	155156207	rs7655799	G	A	7251.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:1,262:1.00:263
chr4	155161666	rs6535989	C	T	4767.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr4	155225784	rs1352715	A	C	609.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr4	155226421	rs12507663	C	A	1418.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr4	155241438	rs11935503	G	A	1380.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr4	155241572	rs11935573	G	A	6183.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr4	155242383	rs62331873	C	T	539.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr4	155243573	rs13109747	C	T	5841.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr4	155243604	rs1352714	T	C	4576.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr4	155244401	rs140019361	TTTTG	T	1268.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.75;SOR=1.071;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr4	155244475	rs12500437	G	T	332.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.60;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	155254149	.	CT	C	5650.73	.	AC=2;AF=1.00;AN=2;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr4	155256177	rs6858157	A	G	5594.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr4	155256205	rs6858712	G	A	4342.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr4	155295154	rs140484732	CAAA	C	255.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.790;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=3.982;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.12;ReadPosRankSum=1.198;SOR=0.209;set=HC	GT:AD:AF:DP	0/1:8,15:0.65:23
chr4	155305491	rs34927139	C	T	2756.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr4	155407407	rs4346631	A	T	1200.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:1,42:0.98:43
chr4	155407569	rs12501998	T	C	3321.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr4	155407680	rs13151559	A	G	1349.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr4	155410407	rs9999285	C	G	2795.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr4	155410822	rs4696593	G	A	6051.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr4	155411065	rs7656522	T	C	14410.77	.	AC=2;AF=1.00;AN=2;DB;DP=513;set=Intersection	GT:AD:AF:DP	1/1:0,502:1.00:502
chr4	155411104	rs6536016	A	C	16019.77	.	AC=2;AF=1.00;AN=2;DB;DP=605;set=Intersection	GT:AD:AF:DP	1/1:1,596:1.00:597
chr4	155469959	rs11451354	G	GA	166.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.829;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=0.797;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=3.665;QD=1.06;ReadPosRankSum=0.311;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:127,31:0.20:158
chr4	155484015	rs1800787	C	T	249.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	155486381	rs2227401	C	T	4982.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr4	155486470	rs2227402	T	A	3936.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr4	155488821	rs6056	C	T	7115.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr4	155489085	rs2227411	A	G	1911.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr4	155490649	rs140114081	TTTTG	T	2163.73	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:1,51:0.98:52
chr4	155490832	rs4681	C	T	6806.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:3,260:0.99:263
chr4	155491759	rs4220	G	A	4205.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr4	155508627	rs2070018	G	A	9082.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:0,338:1.00:338
chr4	155510224	rs7656433	A	T	624.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	155511897	rs2070011	T	C	2435.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr4	155525970	rs1049636	G	A	888.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr4	155718171	rs57686041	A	AT	181.75	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:4,13:0.76:17
chr4	155719919	rs33918255	AT	A	666.52	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.860;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=0.458;QD=14.18;ReadPosRankSum=0.702;SOR=0.968;set=HC	GT:AD:AF:DP	0/1:6,41:0.87:47
chr4	155720274	rs156502	T	C	6159.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr4	155747891	rs35387165	CT	C	1355.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.071;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=1.070;QD=10.68;ReadPosRankSum=1.591;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:23,104:0.82:127
chr4	156632391	rs11944673	A	G	4375.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr4	156706482	rs1459853	G	A	2274.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr4	156721198	rs2229202	C	T	5326.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr4	156757789	rs113590442	G	GA	439.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr4	156757818	rs1399046	A	C	828.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:2,29:0.94:31
chr4	156784970	rs932081	C	T	939.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr4	156787214	rs1399044	A	G	380.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	156787340	rs6848883	G	A	3560.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr4	156826166	rs2137778	C	G	783.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr4	156832841	rs12502494	C	T	300.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	156835631	rs6828277	T	C	1640.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr4	156838535	rs77984239	T	G	6941.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.882;ClippingRankSum=0.000;DB;DP=262;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.91;ReadPosRankSum=2.366;SOR=0.757;set=HC	GT:AD:AF:DP	1/1:2,256:0.99:258
chr4	156874681	rs7670813	A	G	276.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	156874833	rs2292538	G	A	1434.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr4	156874849	rs7671674	G	T	1432.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr4	157557726	rs11943855	A	G	5614.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:2,202:0.99:204
chr4	157563266	rs7658059	A	G	757.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	158005876	rs7667450	G	A	1868.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr4	158041591	rs11932115	G	A	1834.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr4	158041896	rs3775724	G	A	554.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr4	158043559	rs41280501	C	T	933.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr4	158065038	rs12507409	T	C	1086.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr4	158238830	rs4302506	T	C	1318.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr4	158242540	rs4475186	G	A	363.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr4	159538140	rs11321888	CA	C	115.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.829;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=1.620;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.36;ReadPosRankSum=-0.861;SOR=1.077;set=HC	GT:AD:AF:DP	0/1:32,17:0.35:49
chr4	159568383	rs13111939	A	G	1040.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr4	159601676	rs11559290	C	T	3062.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr4	159640565	rs7666472	G	C	835.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr4	159690622	rs55960593	C	T	408.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	159690640	rs59971723	C	A	350.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr4	159754865	.	G	GT	85.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.125;ClippingRankSum=0.000;DP=153;ExcessHet=3.0103;FS=3.259;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.61;ReadPosRankSum=1.008;SOR=1.121;set=HC	GT:AD:AF:DP	0/1:115,26:0.18:141
chr4	159836467	rs10517695	C	T	7901.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:1,296:1.00:297
chr4	159881328	rs978297	T	C	165.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr4	159881479	rs9784569	T	C	1065.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr4	159894250	rs619128	C	T	4029.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr4	159894305	rs662473	T	C	5302.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr4	160050068	rs200262378	TGG	T	65.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.16;ReadPosRankSum=-0.524;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:1,4:0.80:5
chr4	160050096	rs35299335	G	A	82.73	.	AC=1;AF=0.500;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=16.55;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr4	160107918	rs10014197	T	C	1052.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:1,39:0.97:40
chr4	160114277	rs6834634	G	C	984.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:2,38:0.95:40
chr4	160162315	rs11944449	T	C	1320.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr4	160189200	rs111542449	C	CT	340.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.419;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=3.522;MLEAC=1;MLEAF=0.500;MQ=60.37;MQRankSum=0.660;QD=12.17;ReadPosRankSum=2.239;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:7,21:0.75:28
chr4	160251417	rs10692663	A	ATG	469.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.544;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.98;MQRankSum=1.089;QD=16.78;ReadPosRankSum=0.960;SOR=1.044;set=HC	GT:AD:AF:DP	0/1:7,21:0.75:28
chr4	160259713	rs17304561	A	G	1322.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr4	160274180	rs10034898	G	C	608.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr4	160277276	rs1135004	C	T	3076.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr4	162307312	rs3749598	C	A	5004.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr4	162459299	rs4691769	T	C	3542.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr4	162577430	rs17638339	A	G	908.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr4	162680450	rs73860714	T	C	695.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr4	162697014	rs34423160	T	G	1474.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr4	162841814	rs5863499	T	TA	2045.73	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:3,92:0.97:95
chr4	162954926	rs60202022	A	G	1353.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr4	164048199	rs4691895	G	C	6087.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:2,234:0.99:236
chr4	164069397	rs11722876	C	T	328.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	164085425	rs4691896	T	C	1864.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr4	164087954	rs936562	A	T	2934.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr4	164415734	rs2276979	A	G	5580.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:2,204:0.99:206
chr4	164435265	rs2304802	A	C	2325.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:1,102:0.99:103
chr4	164438523	rs12643109	G	A	1549.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr4	164438790	rs140868699	TACAA	T	1223.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr4	164440581	rs1561736	T	C	6415.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr4	164440743	rs4362779	T	A	1726.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr4	164450255	rs372244193	A	AT	685.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.151;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.95;ReadPosRankSum=0.504;SOR=0.613;set=HC	GT:AD:AF:DP	1/1:5,38:0.88:43
chr4	164466824	rs13130399	C	T	8229.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr4	164466970	rs11726828	C	T	2784.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr4	164477252	rs33943246	A	AT	2366.73	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:3,103:0.97:106
chr4	164507104	rs7435076	G	T	585.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr4	164533316	rs907431	A	G	747.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr4	164621883	rs9308064	T	C	678.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr4	164775419	rs143015186	C	T	239.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	165118652	rs2288675	C	T	10669.77	.	AC=2;AF=1.00;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	1/1:0,400:1.00:400
chr4	165118796	rs2288674	G	A	4508.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr4	166403574	rs2289230	A	G	1797.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr4	166408782	rs3822062	T	G	2802.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr4	167012241	rs377180243	GTTT	G	2365.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr4	167012250	.	T	TAA	2783.73	.	AC=2;AF=1.00;AN=2;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.90;SOR=2.457;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr4	167012381	rs2654492	G	A	7453.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr4	167012480	rs2646914	T	C	3892.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr4	167012506	rs2254420	A	G	2651.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr4	167012543	rs2654493	T	C	1292.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr4	167020778	rs72361647	CA	C	98.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.748;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=1.623;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.53;ReadPosRankSum=-0.778;SOR=1.012;set=HC	GT:AD:AF:DP	0/1:15,13:0.46:28
chr4	167932327	rs2558141	T	C	4795.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr4	168155178	rs11557043	A	G	7045.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr4	169086540	.	C	CA	61.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.132;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=1.984;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.68;ReadPosRankSum=-0.166;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:15,8:0.35:23
chr4	169190129	rs33910888	CA	C	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.524;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=1.286;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.42;ReadPosRankSum=0.131;SOR=0.384;set=HC	GT:AD:AF:DP	0/1:64,17:0.21:81
chr4	169279170	rs497151	A	G	273.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr4	169282112	rs2684346	C	T	314.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	169282232	rs2684347	G	A	1324.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr4	169282355	rs2684348	T	C	2405.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr4	169292759	rs6829368	T	C	2117.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr4	169299528	rs13110927	T	C	712.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr4	169299676	rs10517990	T	G	955.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr4	169301059	rs1489232	T	C	411.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	169311790	rs34009039	G	GT	55	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.78;QD=13.75;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr4	169312801	rs6840397	A	G	634.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.751;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=-1.155;QD=5.93;ReadPosRankSum=2.346;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:45,62:0.58:107
chr4	169315571	rs11337868	TA	T	1412.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr4	169315760	rs3749499	C	A	4470.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr4	169317081	rs1826028	C	A	689.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr4	169317279	rs3857035	C	T	178.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.35;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	169336662	rs4692661	T	C	881.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr4	169340639	rs1021318	C	A	802.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr4	169341435	rs2130145	A	G	5997.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr4	169341608	.	TACACATACACACACACACACAC	T,TAC	2377.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.500;ClippingRankSum=0.000;DP=74;ExcessHet=3.0103;FS=7.782;MLEAC=1,1;MLEAF=0.500,0.500;MQ=63.97;MQRankSum=0.656;QD=45.73;ReadPosRankSum=1.482;SOR=3.278;set=HC	GT:AD:AF:DP	1/2:1,11,40:0.21,0.77:52
chr4	169369820	rs2712113	T	A	967.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr4	169369853	rs2712114	A	T	1692.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr4	169374487	rs2634953	A	G	2041.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr4	169392091	rs7680471	G	A	6283.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr4	169392961	.	C	T	4280.77	.	AC=2;AF=1.00;AN=2;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr4	169393179	rs12505232	T	G	645.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr4	169393595	rs13149639	A	G	2163.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr4	169393972	rs113626526	G	GA	3074.73	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr4	169432673	rs61051061	C	T	1096.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr4	169432841	rs1806729	G	A	2860.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr4	169433326	rs7655494	TG	CA	8046.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.70;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,180:1.00:180
chr4	169433333	rs7673220	C	T	7780.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.98;SOR=0.935;set=HC	GT:AD:AF:DP	1/1:0,173:1.00:173
chr4	169433444	rs72695199	C	T	7094.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:2,268:0.99:270
chr4	169589214	rs2723705	T	C	1570.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr4	169612461	.	G	GT	53.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.139;ClippingRankSum=0.000;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.47;ReadPosRankSum=0.052;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:95,19:0.17:114
chr4	169612638	rs189132819	C	T	2092.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr4	170017860	rs1471172	G	A	5411.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr4	170315496	rs4692721	C	T	283.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	170354836	rs7680152	C	T	1928.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr4	170354873	rs13139925	T	C	1079.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr4	170428334	.	G	GTT	175.14	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.516;ClippingRankSum=-0.000;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=0.349;QD=15.92;ReadPosRankSum=1.200;SOR=1.230;set=HC	GT:AD:AF:DP	0/1:3,8:0.73:11
chr4	170428352	rs11335570	G	T	242.22	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.127;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.63;MQRankSum=0.730;QD=18.63;ReadPosRankSum=0.424;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:3,10:0.77:13
chr4	170483143	.	GT	G	73	.	AC=1;AF=0.500;AN=2;BRF=0.07;FR=0.5090;HP=10;HapScore=2;MGOF=15;MMLQ=23;MQ=60.0;NF=2;NR=2;PP=73;QD=21.25;SC=GTTCAATGAGGTTTTTTTTTT;SbPval=0.63;Source=Platypus;TC=11;TCF=6;TCR=5;TR=4;WE=170483151;WS=170483133;set=Platypus	GT:AD:AF:DP	1/0:7,4:0.36:11
chr4	170483153	rs62952760	T	A	151.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.862;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=7.782;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=16.86;ReadPosRankSum=0.719;SOR=1.414;set=HC	GT:AD:AF:DP	0/1:2,7:0.78:9
chr4	170581570	rs4692739	G	A	4915.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr4	170616918	rs2062609	G	A	127.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr4	170623928	rs60812626	CAAAAAAAAAAAA	C	1882.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr4	170628474	rs1566522	A	G	943.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr4	170663235	rs1047642	C	T	1152.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.45;SOR=0.788;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr4	170663321	rs6849004	C	G	641.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr4	170670109	rs369228807	CT	C	99.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.524;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=5.930;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.22;ReadPosRankSum=0.752;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:19,12:0.39:31
chr4	170678993	rs11540095	T	C	5197.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr4	172735897	rs3796654	C	G	1971.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr4	172973421	rs1505494	G	A	1339.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr4	172973423	rs10572855	CAG	C	1331.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr4	172973580	rs1505495	C	A	3223.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.21;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,123:1.00:123
chr4	173232679	rs2136033	A	G	1479.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr4	173269638	rs333399	T	C	3825.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr4	173269915	rs333398	C	T	569.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr4	173803914	rs6810619	T	C	2976.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr4	173873170	rs11322401	TG	T	2865.73	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr4	173930479	rs4696042	A	G	1490.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr4	174090004	rs3733477	G	A	4663.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr4	174310777	rs4695833	A	T	822.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr4	174537063	rs4413383	G	A	1116.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr4	175580119	rs6553802	T	C	524.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	175598334	rs6812439	T	C	3177.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr4	175649861	rs1872548	T	G	653.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.21;SOR=1.528;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr4	175688138	rs7696263	A	G	9012.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.40;SOR=0.806;set=HC	GT:AD:AF:DP	1/1:0,203:1.00:203
chr4	175688141	rs12651268	G	A	9019.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.43;SOR=0.806;set=HC	GT:AD:AF:DP	1/1:0,203:1.00:203
chr4	175688274	rs10551381	TACAC	T,TAC	1127.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=30.48;SOR=2.494;set=HC	GT:AD:AF:DP	1/2:0,11,26:0.30,0.70:37
chr4	176733450	rs62338073	G	T	775.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.83;SOR=2.419;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr4	176733452	rs113129787	G	T	775.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=48.49;SOR=2.049;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	177073026	rs4690661	G	A	7005.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr4	177083166	rs2877924	A	G	857.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr4	177083333	rs12646277	A	G	1058.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr4	177087322	rs4388031	C	T	564.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.67;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr4	177106009	rs28381989	TTCTC	T	12768.73	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr4	177113764	rs6857056	A	C	1482.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr4	177113836	rs6832177	C	T	3219.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr4	177116463	rs994252	C	G	4877.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.566;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=2.114;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.67;ReadPosRankSum=-1.425;SOR=1.485;set=HC	GT:AD:AF:DP	1/1:4,186:0.98:190
chr4	177116779	rs4565028	T	C	1289.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr4	177137988	rs6827525	C	T	2356.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr4	177142776	rs10032098	C	A	3235.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr4	177143378	rs72706385	T	A	767.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr4	177143664	rs6553937	C	G	1174.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr4	177605081	rs5864401	CTCA	C	9670.73	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr4	177608775	rs4604006	T	C	709.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr4	177608875	rs4529000	A	C	1656.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr4	177609203	rs13136065	G	A	2252.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr4	177609259	rs2877962	C	T	1124.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.26;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr4	177609264	rs2333495	C	T	1094.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.79;SOR=3.528;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr4	177650614	rs3836595	T	TA	684.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr4	178167074	rs2118922	G	A	921.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr4	178167282	rs1347894	G	A	5203.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr4	178169500	rs3828517	G	A	3231.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.65;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:0,126:1.00:126
chr4	178256759	rs3215157	CA	C	89.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr4	178257516	rs2271102	G	A	2543.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr4	178274968	rs7691152	A	G	566.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr4	178281754	rs1876268	G	A	6293.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr4	178355668	rs4690521	C	G	6001.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr4	178357514	.	TA	T	84.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.482;ClippingRankSum=0.000;DP=77;ExcessHet=3.0103;FS=2.821;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=-0.572;QD=1.26;ReadPosRankSum=0.597;SOR=0.350;set=HC	GT:AD:AF:DP	0/1:51,16:0.24:67
chr4	178357566	rs71599314	A	ATAATTG	1544.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;MQ=60.26;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr4	178359960	rs2228119	G	C	1821.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr4	178361414	rs34241758	A	C	4703.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr4	178363378	rs11131799	G	A	3047.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr4	178882120	rs9994032	A	T	786.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr4	178882196	rs59355585	A	G	207.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	178887811	rs35244240	C	CTTTT	2005.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.88;QD=40.11;SOR=1.005;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr4	178887815	rs28409849	C	T	2155.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.85;QD=41.46;SOR=1.036;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr4	178911873	rs17065497	G	A	383.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	183090306	rs28555566	A	G	1474.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr4	183090436	rs28701836	A	G	2931.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr4	183267728	rs33933747	TA	T	236.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.859;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=4.301;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.45;ReadPosRankSum=-1.935;SOR=1.814;set=HC	GT:AD:AF:DP	0/1:8,20:0.71:28
chr4	183268148	rs11373586	C	CGG	118	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.50;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr4	183271186	rs10644033	G	GA	293.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=19.58;SOR=3.442;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	183370056	rs11721730	C	T	2800.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr4	183370244	rs35591339	AGCG	A	3964.73	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:2,94:0.98:96
chr4	183522021	rs141344153	C	CAT	246.75	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.19;QD=30.84;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	183594117	rs3749508	A	T	748.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.39;SOR=2.115;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr4	183601593	rs79243933	G	C	2363.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.81;SOR=1.528;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr4	183601666	rs79195097	G	A	1760.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr4	183601847	rs2871328	T	C	7095.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr4	183650026	rs5864796	GA	G	44.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.114;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.97;ReadPosRankSum=0.137;SOR=0.563;set=HC	GT:AD:AF:DP	0/1:36,10:0.22:46
chr4	183652175	rs10866256	T	C	4025.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr4	183674597	rs71620945	A	C	4442.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr4	184170025	rs907357	G	A	2464.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr4	184180920	rs11132172	G	A	1275.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:1,49:0.98:50
chr4	184181012	rs17074537	G	A	275.10	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:1,11:0.92:12
chr4	184190355	rs11407064	A	AC	7037.73	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr4	184190535	rs6858486	G	A	4933.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr4	184202148	rs11132174	G	T	4772.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;MQ=60.06;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr4	184203706	rs2871353	A	T	1472.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr4	184242959	rs6839940	C	G	2894.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr4	184243528	rs7688467	G	A	2936.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr4	184366629	rs11282266	T	TGCACA	1717.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr4	184367558	rs147291711	TCTG	T	9475.73	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr4	184426387	rs8872	C	T	3204.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr4	184426526	rs6552675	A	G	1284.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr4	184618936	rs62617790	G	C	2446.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr4	184932609	rs4862282	G	A	3973.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr4	185038274	rs4642291	G	A	1305.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr4	185074686	rs13147555	A	C	1586.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr4	185339517	rs2288246	C	T	1252.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr4	185339894	rs4861623	G	A	526.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	185340725	rs371986802	GAAA	G,GA	2718.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.505;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=2.064;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.20;MQRankSum=0.829;QD=20.44;ReadPosRankSum=-0.027;SOR=0.467;set=HC	GT:AD:AF:DP	1/2:20,63,50:0.47,0.38:133
chr4	185349978	rs114571855	A	G	4049.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr4	185350307	rs807684	T	C	1131.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr4	185550779	rs10660141	T	TA	195.80	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:1,12:0.92:13
chr4	185552135	rs4647688	C	T	735.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr4	185552345	rs4647687	A	T	332.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	185553098	rs2705897	T	G	520.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.04;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr4	185556618	rs1405938	C	T	1594.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr4	185559487	rs2705901	G	C	5121.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr4	185583092	rs60624489	C	CTATT	4428.73	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr4	185587165	rs2463447	A	G	2323.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr4	185612627	.	CT	C	27	.	AC=1;AF=0.500;AN=2;BRF=0.2;FR=0.6106;HP=15;HapScore=2;MGOF=163;MMLQ=28;MQ=60.0;NF=2;NR=0;PP=27;QD=15.0;SC=GGTATTAATACTTTTTTTTTT;SbPval=1.0;Source=Platypus;TC=3;TCF=3;TCR=0;TR=2;WE=185612635;WS=185612617;set=Platypus	GT:AD:AF:DP	1/0:1,2:0.67:3
chr4	185612953	rs2696035	A	G	661.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:2,27:0.93:29
chr4	185615567	rs139656616	G	GTATC	1447.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr4	185616438	rs13478	C	T	1398.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr4	185637418	rs2077205	C	T	445.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	185652201	rs7675046	G	A	1459.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr4	185652223	rs200616790	AAC	A	57.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.211;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.06;ReadPosRankSum=2.145;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:19,9:0.32:28
chr4	185652224	rs11362720	AC	A	295.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.151;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.56;ReadPosRankSum=-2.097;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:9,19:0.68:28
chr4	185655171	rs902174	C	T	4111.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:2,155:0.99:157
chr4	185655190	rs876840	C	G	3822.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:1,143:0.99:144
chr4	185678490	rs76536858	T	C	229.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	185681475	rs6825554	G	C	3592.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr4	185683840	rs939040	A	G	944.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr4	185686032	rs2292898	C	T	4524.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr4	185686856	rs3792314	C	G	1772.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr4	185686948	.	A	AAC	5221.73	.	AC=1;AF=0.500;AN=2;DP=242;set=Intersection	GT:AD:AF:DP	0/1:40,171:0.81:211
chr4	185687687	rs12374289	A	C	208.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	185694877	.	TA	T	112.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.589;ClippingRankSum=0.000;DP=153;ExcessHet=3.0103;FS=0.856;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.84;ReadPosRankSum=1.123;SOR=0.587;set=HC	GT:AD:AF:DP	0/1:102,32:0.24:134
chr4	185698183	rs78251730	T	G	5081.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr4	185705006	rs2102862	G	A	2333.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr4	185735054	rs7676928	G	A	1054.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr4	185736113	rs2280297	G	C	7902.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr4	185772384	rs1032299	A	G	1852.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr4	185859505	rs6821859	T	G	5020.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr4	185859682	rs10446837	A	G	2389.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr4	185999348	rs10023344	T	C	1680.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr4	185999404	rs10033666	A	T	3307.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr4	185999543	rs6841061	G	A	5689.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr4	185999587	rs6818170	T	A	3435.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr4	186065844	rs34795113	C	CT	339.74	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:2,18:0.90:20
chr4	186111639	rs1133657	T	C	4704.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr4	186112111	rs3108237	G	A	5145.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr4	186112369	rs34825796	G	GA	1239.73	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:1,56:0.98:57
chr4	186168387	rs3108252	T	G	252.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	186170358	rs3108229	G	A	773.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr4	186188373	rs57930723	TA	T	143.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.619;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=1.472;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.05;ReadPosRankSum=1.618;SOR=1.005;set=HC	GT:AD:AF:DP	0/1:46,24:0.34:70
chr4	186283991	rs3047489	CT	C	60.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.810;ClippingRankSum=-0.000;DB;DP=33;ExcessHet=3.0103;FS=2.757;MLEAC=1;MLEAF=0.500;MQ=59.19;MQRankSum=-0.736;QD=4.67;ReadPosRankSum=-0.980;SOR=2.093;set=HC	GT:AD:AF:DP	0/1:4,9:0.69:13
chr4	186320666	rs11287696	TA	T	627.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr4	186321067	rs1053218	C	T	1640.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr4	186321447	rs3733646	C	G	593.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	186323209	rs3733645	A	G	631.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr4	186323593	rs6552880	C	T	332.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	186324841	rs13126680	T	A	2264.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr4	186336583	rs10032989	G	A	352.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	186339584	rs10003160	A	G	1788.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr4	186347055	rs2289720	G	A	6668.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr4	186347073	rs11132303	G	C	5510.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr4	186347092	rs10866275	T	C	4218.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr4	186357523	rs7697970	C	G	1382.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr4	186361876	rs4476640	A	G	1061.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr4	186366315	rs2120414	T	C	2863.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr4	186366809	rs6833872	C	T	198.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	186370676	rs35349112	T	TA	636.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.025;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=1.380;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=0.688;QD=12.24;ReadPosRankSum=-0.409;SOR=1.234;set=HC	GT:AD:AF:DP	0/1:14,38:0.73:52
chr4	186378790	rs4279261	T	C	91.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr4	186379104	rs7664578	T	C	1039.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.58;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr4	186379371	rs7687202	G	A	3044.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr4	186393233	.	G	GT	143.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.636;ClippingRankSum=0.000;DP=214;ExcessHet=3.0103;FS=4.673;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.70;ReadPosRankSum=-0.875;SOR=0.960;set=HC	GT:AD:AF:DP	0/1:167,38:0.19:205
chr4	186423637	rs4635850	G	A	3219.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr4	186423655	rs12644280	G	A	2709.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr4	186423677	rs10866276	G	A	2097.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr4	186423734	rs34016200	TCA	T	1248.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr4	186427841	rs2306705	T	C	2063.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr4	186444698	rs4862543	A	C	796.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.94;SOR=2.419;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr4	186444704	rs4861669	C	T	787.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.76;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	186456617	rs4862545	A	G	4400.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr4	186528433	rs13144963	T	C	3317.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr4	186545719	rs13119106	G	T	800.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;MQ=60.39;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr4	186545728	rs3841443	TA	T	690.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr4	186568566	rs60210360	C	CT	433.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.397;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.11;ReadPosRankSum=-0.841;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:23,38:0.62:61
chr4	186569283	rs57907928	G	GT	386.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.436;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=3.976;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.37;ReadPosRankSum=-0.679;SOR=0.910;set=HC	GT:AD:AF:DP	0/1:8,26:0.76:34
chr4	186572791	rs4862557	C	T	2992.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr4	186577594	rs35560526	CT	C	626.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.500;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=1.886;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.19;ReadPosRankSum=0.273;SOR=0.406;set=HC	GT:AD:AF:DP	1/1:10,46:0.82:56
chr4	186611819	rs79427853	A	G	827.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:1,32:0.97:33
chr4	186997643	rs1568358	C	G	686.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr4	186997767	rs3775296	C	A	3403.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr4	187003378	.	CAAAAAAA	C	211.75	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.792;ClippingRankSum=-0.000;DP=8;ExcessHet=3.0103;FS=8.451;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=30.25;ReadPosRankSum=0.792;SOR=3.897;set=HC	GT:AD:AF:DP	0/1:1,6:0.86:7
chr4	187004217	rs3775290	C	T	8778.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:1,313:1.00:314
chr4	187005376	rs6830345	T	C	789.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.34;SOR=3.352;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	187005379	.	C	CTT	32.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.494;ClippingRankSum=-0.000;DP=24;ExcessHet=3.0103;FS=8.195;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.34;ReadPosRankSum=2.895;SOR=3.611;set=HC	GT:AD:AF:DP	0/1:7,7:0.50:14
chr4	187072932	rs2276914	A	G	1890.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr4	187073000	rs2276913	A	G	4575.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr4	187073030	rs2276912	T	C	5107.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr4	187074833	rs4862650	A	G	1981.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr4	187075474	rs6552958	G	A	111.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr4	187077206	rs4862653	A	G	5111.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr4	187078785	rs2276924	A	G	5193.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr4	187078819	rs2276923	C	G	4377.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr4	187079017	rs1877321	G	A	1924.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr4	187088665	rs55700071	CAA	C	333.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.385;ClippingRankSum=-0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=18.54;ReadPosRankSum=-1.645;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:3,15:0.83:18
chr4	187115632	rs10013653	C	A	4604.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr4	187115841	rs7682918	C	T	2423.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr4	187118040	rs112367913	TTC	T	363.73	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.07;SOR=2.494;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	187118662	rs4862662	G	T	9127.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	1/1:0,347:1.00:347
chr4	187120211	rs13146272	C	A	3577.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:2,135:0.99:137
chr4	187122304	rs3817184	C	T	2679.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr4	187122319	rs3736455	T	G	3012.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr4	187130198	rs2276918	A	G	8287.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr4	187149540	rs1912826	G	A	1774.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr4	187158034	rs3733402	G	A	6737.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr4	187159282	rs4253256	G	C	1255.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr4	187171355	rs4253299	A	G	6056.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr4	187172280	rs2304595	G	A	579.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr4	187172353	rs4253300	C	CT	1291.73	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr4	187175722	rs2292423	T	A	1053.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:1,39:0.97:40
chr4	187178599	rs4253326	C	T	514.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr4	187178613	rs4253327	A	T	304.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr4	187179210	rs925453	T	C	4215.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:2,164:0.99:166
chr4	187208747	rs186001900	T	A	98.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.968;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=5.880;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.05;ReadPosRankSum=-3.481;SOR=2.546;set=HC	GT:AD:AF:DP	0/1:9,5:0.36:14
chr4	187518980	rs1280096	T	C	8825.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:0,338:1.00:338
chr4	187519206	rs1280097	C	G	6910.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr4	187530313	rs4862722	C	T	2530.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr4	187584771	rs172903	C	G	5156.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr4	187627659	rs200130748	TA	T	407.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.317;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=0.874;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.272;QD=2.95;ReadPosRankSum=-0.661;SOR=0.554;set=HC	GT:AD:AF:DP	0/1:82,56:0.41:138
chr4	187628054	rs114279527	C	G	4886.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr4	187630597	rs41278611	C	G	12071.77	.	AC=2;AF=1.00;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	1/1:1,432:1.00:433
chr4	189012728	rs2279550	G	C	6801.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr4	189013880	rs12499630	T	G	229.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	189020293	rs11736108	G	A	5199.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:2,202:0.99:204
chr4	189020348	rs902910	G	A	4584.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:4,173:0.98:177
chr4	189025972	rs9685561	A	C	8285.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:3,315:0.99:318
chr4	189063361	rs70938702	CGTGTGT	C	998.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=41.61;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr4	189064873	rs72725001	C	T	4198.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr4	189064952	rs28463290	C	G	7439.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr4	189065055	rs11940009	C	G	4179.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr4	189065104	rs9784566	T	G	2243.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr4	189065441	rs11940227	G	T	174.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr4	190329166	rs10622647	G	GCGCACACACA,GCGCACACACACA	2148.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=58;set=Intersection	GT:AF:DP	1/2:0.20,0.80:40
chr4	190394938	rs147390696	CAAG	C	2132.73	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr4	190876160	rs74543744	C	T	1176.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:229,49:0.18:278
chr4	190876177	rs80264746	G	C	2865.77	.	AC=1;AF=0.500;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	0/1:279,111:0.28:390
chr4	190876195	rs7684300	C	T	10067.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.412;ClippingRankSum=0.000;DB;DP=620;ExcessHet=3.0103;FS=25.347;MLEAC=1;MLEAF=0.500;MQ=52.38;MQRankSum=-22.272;QD=16.37;ReadPosRankSum=-7.614;SOR=2.002;set=HC	GT:AD:AF:DP	0/1:348,267:0.43:615
chr4	190876204	rs3207892	G	A	11239.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.701;ClippingRankSum=0.000;DB;DP=696;ExcessHet=3.0103;FS=13.928;MLEAC=1;MLEAF=0.500;MQ=52.16;MQRankSum=-23.504;QD=16.48;ReadPosRankSum=-6.457;SOR=1.515;set=HC	GT:AD:AF:DP	0/1:362,320:0.47:682
chr4	190876242	rs1061653	G	A	11762.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-10.905;ClippingRankSum=0.000;DB;DP=831;ExcessHet=3.0103;FS=0.541;MLEAC=1;MLEAF=0.500;MQ=51.14;MQRankSum=-22.531;QD=14.22;ReadPosRankSum=3.959;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:303,524:0.63:827
chr4	190876256	rs140599307	C	T	637.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.345;ClippingRankSum=0.000;DB;DP=809;ExcessHet=3.0103;FS=5.993;MLEAC=1;MLEAF=0.500;MQ=50.56;MQRankSum=-3.107;QD=0.79;ReadPosRankSum=0.771;SOR=1.400;set=HC	GT:AD:AF:DP	0/1:713,91:0.11:804
chr4	190876269	rs149113074	T	C	447.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.663;ClippingRankSum=0.000;DB;DP=770;ExcessHet=3.0103;FS=2.626;MLEAC=1;MLEAF=0.500;MQ=50.13;MQRankSum=-6.272;QD=0.58;ReadPosRankSum=3.009;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:654,113:0.15:767
chr4	190876319	rs77450681	A	T	8794.77	.	AC=1;AF=0.500;AN=2;DB;DP=540;set=Intersection	GT:AD:AF:DP	0/1:179,354:0.66:533
chr4	190876349	rs199599460	C	T	3684.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:122,141:0.54:263
chr4	190878463	rs62345288	T	G	1968.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.766;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=58.054;MLEAC=1;MLEAF=0.500;MQ=52.98;MQRankSum=-11.378;QD=10.20;ReadPosRankSum=3.434;SOR=5.061;set=HC	GT:AD:AF:DP	0/1:132,61:0.32:193
chr4	190878485	rs62345289	G	A	2028.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.982;ClippingRankSum=0.000;DB;DP=223;ExcessHet=3.0103;FS=73.055;MLEAC=1;MLEAF=0.500;MQ=53.84;MQRankSum=-12.208;QD=9.18;ReadPosRankSum=3.303;SOR=5.453;set=HC	GT:AD:AF:DP	0/1:160,61:0.28:221
chr4	190878506	rs12643923	C	T	2226.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.262;ClippingRankSum=0.000;DB;DP=266;ExcessHet=3.0103;FS=77.175;MLEAC=1;MLEAF=0.500;MQ=54.94;MQRankSum=-15.346;QD=8.43;ReadPosRankSum=4.505;SOR=4.337;set=HC	GT:AD:AF:DP	0/1:193,71:0.27:264
chr4	190878538	rs34697501	A	AT	1877.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.743;ClippingRankSum=0.000;DB;DP=403;ExcessHet=3.0103;FS=119.172;MLEAC=1;MLEAF=0.500;MQ=53.04;MQRankSum=-14.909;QD=4.71;ReadPosRankSum=-5.554;SOR=4.538;set=HC	GT:AD:AF:DP	0/1:293,106:0.27:399
chr4	190878563	rs137858630	C	A	458.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.994;ClippingRankSum=0.000;DB;DP=795;ExcessHet=3.0103;FS=5.421;MLEAC=1;MLEAF=0.500;MQ=54.26;MQRankSum=-2.714;QD=0.59;ReadPosRankSum=-5.245;SOR=1.375;set=HC	GT:AD:AF:DP	0/1:681,103:0.13:784
chr4	190878569	.	T	C	312.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.488;ClippingRankSum=0.000;DP=880;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.57;MQRankSum=-5.860;QD=0.36;ReadPosRankSum=-1.703;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:813,67:0.08:880
chr4	190878571	.	G	A	261.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.507;ClippingRankSum=0.000;DP=915;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.53;MQRankSum=-6.019;QD=0.29;ReadPosRankSum=-1.453;SOR=0.778;set=HC	GT:AD:AF:DP	0/1:844,71:0.08:915
chr4	190878596	.	G	A	948.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.477;ClippingRankSum=0.000;DP=1233;ExcessHet=3.0103;FS=1.010;MLEAC=1;MLEAF=0.500;MQ=54.21;MQRankSum=-4.998;QD=0.77;ReadPosRankSum=1.035;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:1132,101:0.08:1233
chr4	190878597	rs62345290	C	T	15382.77	.	AC=1;AF=0.500;AN=2;DB;DP=1251;set=Intersection	GT:AD:AF:DP	0/1:585,666:0.53:1251
chr4	190878599	.	A	G	939.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.600;ClippingRankSum=0.000;DP=1283;ExcessHet=3.0103;FS=1.014;MLEAC=1;MLEAF=0.500;MQ=54.26;MQRankSum=-4.722;QD=0.73;ReadPosRankSum=1.003;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:1176,107:0.08:1283
chr4	190878608	.	G	A	912.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.057;ClippingRankSum=0.000;DP=1349;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.23;MQRankSum=-5.168;QD=0.68;ReadPosRankSum=1.307;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:1234,115:0.09:1349
chr4	190878654	rs78653319	C	G	3304.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.248;ClippingRankSum=0.000;DB;DP=1484;ExcessHet=3.0103;FS=0.652;MLEAC=1;MLEAF=0.500;MQ=53.48;MQRankSum=-5.477;QD=2.23;ReadPosRankSum=-1.843;SOR=0.558;set=HC	GT:AD:AF:DP	0/1:1168,314:0.21:1482
chr4	190878661	rs62345291	A	T	12956.77	.	AC=1;AF=0.500;AN=2;DB;DP=1474;set=Intersection	GT:AD:AF:DP	0/1:838,634:0.43:1472
chr4	190878729	rs201450141	A	G	5280.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.329;ClippingRankSum=0.000;DB;DP=270;ExcessHet=3.0103;FS=70.034;MLEAC=1;MLEAF=0.500;MQ=51.38;MQRankSum=-14.984;QD=19.70;ReadPosRankSum=-5.695;SOR=3.494;set=HC	GT:AD:AF:DP	0/1:127,141:0.53:268
chr4	190878731	rs201154783	GG	CA	5280.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=10.554;ClippingRankSum=0.000;DB;DP=250;ExcessHet=3.0103;FS=72.871;JOINED;MLEAC=1;MLEAF=0.500;MQ=50.98;MQRankSum=-14.542;QD=21.29;ReadPosRankSum=-5.565;SOR=3.847;set=HC	GT:AD:AF:DP	0/1:122,126:0.51:248
chr4	190878750	rs113800771	A	G	1072.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.513;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=47.230;MLEAC=1;MLEAF=0.500;MQ=52.38;MQRankSum=-9.198;QD=7.06;ReadPosRankSum=0.096;SOR=5.638;set=HC	GT:AD:AF:DP	0/1:108,44:0.29:152
chr4	190878759	.	C	G	1273	.	AC=1;AF=0.500;AN=2;BRF=0.57;FR=0.5000;HP=2;HapScore=1;MGOF=76;MMLQ=27;MQ=40.36;NF=0;NR=79;PP=1273;QD=16.5540659816;SC=TAAAGATTTACTTAATAGCTT;SbPval=1.0;Source=Platypus;TC=201;TCF=19;TCR=182;TR=79;WE=190878767;WS=190878740;set=Platypus	GT:AD:AF:DP	0/1:122,79:0.39:201
chr4	190882973	rs78181874	A	G	536.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:99,35:0.26:134
chr4	190947451	rs140385360	C	T	8315.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:6,323:0.98:329
chr5	163205	rs3810870	G	C	6309.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:2,230:0.99:232
chr5	163260	rs29674	A	C	7506.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.16;SOR=0.897;set=HC	GT:AD:AF:DP	1/1:0,170:1.00:170
chr5	163266	rs3810867	C	G	4521.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.024;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=27.24;ReadPosRankSum=-1.444;SOR=0.934;set=HC	GT:AD:AF:DP	1/1:2,164:0.99:166
chr5	163769	rs29675	G	A	948.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr5	205360	rs10059907	G	C	2690.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr5	205565	rs10060089	G	A	10554.77	.	AC=2;AF=1.00;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	1/1:2,392:0.99:394
chr5	218356	rs2303741	T	C	543.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.72;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	218381	rs3214561	T	TC	638.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	220433	rs56035544	T	TG	1864.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr5	223807	rs3213839	C	T	477.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr5	224418	rs7732389	T	G	526.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr5	224633	rs1139424	A	G	1122.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr5	224692	rs7705721	G	T	607.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	225774	rs61492827	A	G	935.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr5	225796	rs56342538	T	C	748.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr5	226160	rs6555055	A	C	1809.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr5	226222	rs6555056	T	C	927.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr5	226264	rs6555057	C	T	584.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	228362	rs2115272	T	C	4462.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr5	230822	rs10069197	G	C	2163.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.92;QD=47.04;SOR=2.737;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr5	230828	rs10074958	C	T	2196.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.80;QD=42.25;SOR=2.393;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr5	230980	rs2288461	A	G	5055.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr5	231111	rs1126417	T	C	5313.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr5	233572	rs7710005	A	G	3526.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:1,115:0.99:116
chr5	233734	rs1041949	C	G	9890.77	.	AC=2;AF=1.00;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	1/1:5,372:0.99:377
chr5	235548	rs10060259	T	C	5480.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr5	235608	rs10058428	A	G	2282.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr5	236753	rs10057677	C	T	5528.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.86;QD=42.20;SOR=1.521;set=HC	GT:AD:AF:DP	1/1:0,131:1.00:131
chr5	236760	rs10057678	C	A	5359.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=52.71;QD=46.20;SOR=1.823;set=HC	GT:AD:AF:DP	1/1:0,116:1.00:116
chr5	251419	rs10041187	C	T	659.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.26;QD=32.99;SOR=4.615;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr5	251469	rs10039029	G	A	1722.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr5	251541	rs77210621	A	G	4570.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr5	251703	rs111797600	TG	T	17716.73	.	AC=2;AF=1.00;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	1/1:8,414:0.98:422
chr5	251707	.	T	C	17724.77	.	AC=2;AF=1.00;AN=2;DP=421;set=Intersection	GT:AD:AF:DP	1/1:8,412:0.98:420
chr5	251784	rs10041277	C	T	4103.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:2,150:0.99:152
chr5	256434	rs372662724	ACT	A	2227.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.823;ClippingRankSum=0.000;DB;DP=357;ExcessHet=3.0103;FS=3.638;MLEAC=1;MLEAF=0.500;MQ=56.83;MQRankSum=-18.430;QD=6.29;ReadPosRankSum=-1.284;SOR=0.600;set=HC	GT:AD:AF:DP	0/1:280,74:0.21:354
chr5	256472	rs6961	G	A	12317.77	.	AC=2;AF=1.00;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	1/1:0,399:1.00:399
chr5	256483	rs112307877	CTT	C	2799.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.433;ClippingRankSum=0.000;DB;DP=390;ExcessHet=3.0103;FS=0.922;MLEAC=1;MLEAF=0.500;MQ=56.00;MQRankSum=-17.467;QD=7.27;ReadPosRankSum=4.381;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:296,89:0.23:385
chr5	256509	rs6962	G	A	5595.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:86,246:0.74:332
chr5	256514	rs1042446	G	C	1082.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:228,83:0.27:311
chr5	256548	rs1042476	TG	CA	710.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.606;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=19.390;JOINED;MLEAC=1;MLEAF=0.500;MQ=55.90;MQRankSum=-11.153;QD=3.86;ReadPosRankSum=-2.634;SOR=2.401;set=HC	GT:AD:AF:DP	0/1:153,31:0.17:184
chr5	256573	.	A	G	312.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.785;ClippingRankSum=0.000;DP=114;ExcessHet=3.0103;FS=16.819;MLEAC=1;MLEAF=0.500;MQ=55.67;MQRankSum=-7.828;QD=2.74;ReadPosRankSum=-1.034;SOR=3.702;set=HC	GT:AD:AF:DP	0/1:98,16:0.14:114
chr5	256578	rs150891426	T	C	318.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.025;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=14.119;MLEAC=1;MLEAF=0.500;MQ=55.57;MQRankSum=-7.447;QD=3.09;ReadPosRankSum=-1.489;SOR=3.207;set=HC	GT:AD:AF:DP	0/1:88,15:0.15:103
chr5	271857	rs147793210	CCCGGCCCTGGGG	C	4019.73	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:1,95:0.99:96
chr5	376666	.	A	AATG	1751.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.735;ClippingRankSum=0.000;DP=198;ExcessHet=3.0103;FS=6.200;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.57;ReadPosRankSum=-7.000;SOR=0.369;set=HC	GT:AD:AF:DP	0/1:130,53:0.29:183
chr5	376670	.	A	ACCGTGGGGT	1607.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.507;ClippingRankSum=0.000;DP=182;ExcessHet=3.0103;FS=3.151;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.83;ReadPosRankSum=-8.424;SOR=0.462;set=HC	GT:AD:AF:DP	0/1:134,48:0.26:182
chr5	376672	.	A	AACGC	1568.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.207;ClippingRankSum=0.000;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.51;ReadPosRankSum=-7.893;SOR=0.632;set=HC	GT:AD:AF:DP	0/1:136,29:0.18:165
chr5	413428	rs3215229	AT	A	1840.73	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:14,106:0.88:120
chr5	413591	rs11744075	G	A	8141.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.54;SOR=1.078;set=HC	GT:AD:AF:DP	1/1:0,187:1.00:187
chr5	413594	rs2261659	G	C	8108.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.05;SOR=1.110;set=HC	GT:AD:AF:DP	1/1:0,180:1.00:180
chr5	413639	rs2672731	G	C	2957.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr5	422955	rs2292596	C	G	2782.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr5	433952	rs2672724	C	T	652.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr5	434981	rs2672725	G	C	1668.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr5	435055	rs2672779	G	T	865.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr5	453567	rs2672722	G	A	5731.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr5	456915	rs2721010	A	G	4498.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr5	457955	rs2251843	A	G	2321.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:2,91:0.98:93
chr5	462465	rs890972	C	A	2601.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr5	462556	rs2081942	G	A	891.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr5	464288	.	C	G	942.77	.	AC=2;AF=1.00;AN=2;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr5	465510	rs1035908	T	C	271.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr5	466075	rs10474780	G	C	986.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr5	466811	rs2434697	T	C	4857.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr5	472951	rs890974	T	C	2908.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:2,108:0.98:110
chr5	473368	rs34674918	G	A	473.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr5	474945	.	AG	A	339	.	AC=2;AF=1.00;AN=2;BRF=0.45;FR=1.0000;HP=5;HapScore=2;MGOF=18;MMLQ=28;MQ=58.75;NF=7;NR=2;PP=339;QD=41.0;SC=GGAGACCTGGAGGGAGAGGAG;SbPval=0.5;Source=Platypus;TC=11;TCF=9;TCR=2;TR=9;WE=474953;WS=474935;set=Platypus	GT:AD:AF:DP	1/1:2,9:0.82:11
chr5	474974	rs2721018	C	T	653.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr5	475104	rs2247114	A	G	2066.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr5	475346	rs2247107	A	T	1012.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr5	476530	rs2244240	C	G	3767.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr5	476848	rs890976	C	T	1964.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr5	476910	rs890977	T	C	958.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr5	477303	rs890980	A	G	1070.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr5	477639	rs890981	G	A	477.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr5	478574	rs3832380	GGGGGCGCA	G	542.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr5	478598	rs3734140	C	T	655.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	478655	rs3734141	G	A	1063.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr5	479879	rs376525752	G	GC	1255.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr5	479905	rs890986	A	C	2037.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr5	481610	rs6872510	T	C	3517.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr5	482151	.	G	GCC	203.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.447;ClippingRankSum=-0.000;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.61;MQRankSum=-0.349;QD=18.52;ReadPosRankSum=-0.886;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:3,8:0.73:11
chr5	482186	rs9885312	C	G	1927.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr5	482653	rs3777230	T	C	2364.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr5	488310	rs2303737	C	T	3993.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr5	491826	rs11746373	G	C	3003.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr5	619022	rs1617985	C	T	520.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	619333	rs1709531	T	C	4501.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr5	639107	.	G	A	1826.77	.	AC=2;AF=1.00;AN=2;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr5	741736	rs61128505	G	T	445.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.51;QD=27.86;SOR=2.049;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr5	745275	rs436541	A	T	299.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.35;QD=29.98;SOR=4.804;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	745306	rs172870	A	C	1022.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.275;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=6.947;MLEAC=2;MLEAF=1.000;MQ=44.34;MQRankSum=-1.804;QD=26.91;ReadPosRankSum=-1.293;SOR=4.294;set=HC	GT:AD:AF:DP	1/1:2,36:0.95:38
chr5	751412	.	T	A	207.78	.	AC=2;AF=1.00;AN=2;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.75;QD=25.97;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr5	756307	rs367198	T	C	80.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.32;QD=20.01;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr5	766910	rs1809933	C	T	7445.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:2,275:0.99:277
chr5	767033	rs1809932	A	C	5865.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr5	796006	.	TGG	T	2962	.	AC=1;AF=0.500;AN=2;BRF=0.55;FR=0.5000;HP=4;HapScore=1;MGOF=62;MMLQ=26;MQ=59.11;NF=174;NR=350;PP=2962;QD=20;SC=CCCAGTACTGTGGGCTCCCAT;SbPval=0.31;Source=Platypus;TC=620;TCF=187;TCR=433;TR=524;WE=796015;WS=795996;set=Platypus	GT:AD:AF:DP	1/0:96,524:0.85:620
chr5	796047	rs33929417	CTG	C	40575.73	.	AC=2;AF=1.00;AN=2;DB;DP=1049;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.60;QD=42.09;SOR=0.753;set=HC	GT:AD:AF:DP	1/1:0,964:1.00:964
chr5	796053	.	GCT	G	2966	.	AC=1;AF=0.500;AN=2;BRF=0.55;FR=0.5000;HP=1;HapScore=1;MGOF=26;MMLQ=26;MQ=59.06;NF=164;NR=446;PP=2966;QD=20;SC=AGTACTGTGTGCTCCCATTTC;SbPval=0.53;Source=Platypus;TC=617;TCF=168;TCR=449;TR=610;WE=796072;WS=796019;set=Platypus	GT:AD:AF:DP	0/1:7,610:0.99:617
chr5	796064	.	T	C	2962	.	AC=1;AF=0.500;AN=2;BRF=0.55;FR=0.5000;HP=2;HapScore=1;MGOF=26;MMLQ=23;MQ=59.14;NF=225;NR=236;PP=2962;QD=20;SC=CTCCCATTTCTCAGTACTGTA;SbPval=0.56;Source=Platypus;TC=949;TCF=467;TCR=482;TR=461;WE=796072;WS=796019;set=Platypus	GT:AD:AF:DP	0/1:488,461:0.49:949
chr5	796064	rs144616948	T	TCAGTACTGTATGCCCATTTCC	36046.73	.	AC=2;AF=1.00;AN=2;DB;DP=999;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.61;QD=51.79;SOR=0.802;set=HC	GT:AD:AF:DP	1/1:0,696:1.00:696
chr5	834075	rs1260864	G	A	457.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr5	837556	rs28449575	T	G	763.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.488;ClippingRankSum=0.000;DB;DP=402;ExcessHet=3.0103;FS=40.768;MLEAC=1;MLEAF=0.500;MQ=57.55;MQRankSum=-17.366;QD=1.95;ReadPosRankSum=-2.426;SOR=2.350;set=HC	GT:AD:AF:DP	0/1:324,68:0.17:392
chr5	840342	rs3822811	A	G	4697.77	.	AC=1;AF=0.500;AN=2;DB;DP=513;set=Intersection	GT:AD:AF:DP	0/1:268,239:0.47:507
chr5	840506	rs7701283	C	T	2963.77	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:220,142:0.39:362
chr5	870740	rs13153992	C	T	2039.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr5	878525	rs508016	T	A	388.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.987;ClippingRankSum=0.000;DB;DP=310;ExcessHet=3.0103;FS=16.770;MLEAC=1;MLEAF=0.500;MQ=58.12;MQRankSum=-16.786;QD=1.25;ReadPosRankSum=6.473;SOR=0.957;set=HC	GT:AD:AF:DP	0/1:258,52:0.17:310
chr5	893356	rs13181961	C	G	6342.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:2,245:0.99:247
chr5	904374	rs12518024	T	G	6338.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:3,233:0.99:236
chr5	904395	.	G	GT	346.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.310;ClippingRankSum=0.000;DP=159;ExcessHet=3.0103;FS=1.647;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.65;ReadPosRankSum=1.901;SOR=0.528;set=HC	GT:AD:AF:DP	0/1:95,36:0.27:131
chr5	1009425	rs10060716	A	G	154.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr5	1034246	rs4975576	A	T	519.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr5	1035399	rs147352169	T	TAATG	3604.73	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:2,81:0.98:83
chr5	1035482	rs12657514	A	G	5771.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr5	1036616	rs367843383	CA	C	643.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.53;QD=32.19;SOR=6.091;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr5	1036900	rs34309815	C	T	1590.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr5	1036962	rs34413936	C	A	1093.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr5	1038526	rs3889678	A	G	5536.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr5	1052360	rs3810854	C	T	1874.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr5	1052735	rs4046186	GGAGCA	G	355.74	.	AC=2;AF=1.00;AN=2;DB;DP=9;MQ=62.36;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr5	1057782	rs12108965	T	C	1134.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr5	1057815	rs185072308	G	A	719.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr5	1060400	rs4975568	G	A	1352.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr5	1060634	rs4246750	C	T	5079.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr5	1060654	rs4246749	G	A	4001.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr5	1060685	rs2241608	G	A	2738.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:1,100:0.99:101
chr5	1063187	rs6863419	T	C	729.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr5	1063998	rs7722287	G	A	5590.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr5	1065290	rs4362981	A	G	5849.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.35;SOR=1.821;set=HC	GT:AD:AF:DP	1/1:0,129:1.00:129
chr5	1065297	rs62331176	C	T	6386.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.62;SOR=1.964;set=HC	GT:AD:AF:DP	1/1:0,137:1.00:137
chr5	1065301	rs79273934	G	A	6496.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.81;SOR=2.160;set=HC	GT:AD:AF:DP	1/1:0,145:1.00:145
chr5	1065306	.	ACT	A	6667.73	.	AC=2;AF=1.00;AN=2;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.67;SOR=2.176;set=HC	GT:AD:AF:DP	1/1:0,146:1.00:146
chr5	1065309	.	GAGGAGACACAC	G	2967	.	AC=2;AF=1.00;AN=2;BRF=0.45;FR=1.0000;HP=1;HapScore=1;MGOF=7;MMLQ=23;MQ=60.27;NF=22;NR=25;PP=2967;QD=20;SC=AGGGGACACTGAGGAGACACA;SbPval=0.45;Source=Platypus;TC=52;TCF=23;TCR=29;TR=47;WE=1065327;WS=1065266;set=Platypus	GT:AD:AF:DP	1/1:5,47:0.90:52
chr5	1065310	.	A	C	6692.77	.	AC=2;AF=1.00;ALERT;AN=2;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.84;SOR=2.176;set=HC	GT:AD:AF:DP	1/1:0,146:1.00:146
chr5	1065311	.	GGAGACACAC	G	6691.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.35;QD=44.32;SOR=2.136;set=HC	GT:AD:AF:DP	1/1:0,151:1.00:151
chr5	1065689	rs13186367	C	T	792.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr5	1073689	rs10780095	C	T	2124.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr5	1076245	rs11951420	G	A	4215.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr5	1076459	rs11952124	G	T	5014.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr5	1078124	rs200032397	T	TGCAG	6921.73	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:1,157:0.99:158
chr5	1078898	rs4975564	A	G	3022.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr5	1081767	rs4526148	C	T	6155.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr5	1085604	rs11133624	C	A	3938.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:1,137:0.99:138
chr5	1093609	rs56276350	G	GGGGCGGGGACT	816.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr5	1093860	rs6883411	CC	GT	1771.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr5	1160435	rs141202269	GGA	G	109.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.673;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=1.602;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=2.151;QD=2.55;ReadPosRankSum=1.619;SOR=0.315;set=HC	GT:AD:AF:DP	0/1:35,8:0.19:43
chr5	1208964	rs60992377	T	C	1967.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr5	1212150	rs375014710	CTG	C	50.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.661;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=2.602;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.54;ReadPosRankSum=1.422;SOR=0.138;set=HC	GT:AD:AF:DP	0/1:16,4:0.20:20
chr5	1212178	rs4975632	G	A	826.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr5	1214264	rs6554663	A	G	3937.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr5	1216775	rs4975629	A	G	9178.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:0,338:1.00:338
chr5	1219859	rs11746371	C	T	2052.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr5	1219874	rs6869718	G	A	1674.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr5	1221199	rs12513763	T	C	3249.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr5	1225564	rs7728646	T	C	922.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr5	1225613	rs7704058	G	A	1651.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr5	1225626	rs7728667	T	A	2049.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr5	1225676	rs33978774	C	T	4350.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr5	1225687	rs7705355	CT	TC	7269.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr5	1225703	rs7724858	A	G	5089.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr5	1225801	rs7704363	G	A	3173.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr5	1232240	rs7379178	C	T	794.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr5	1232491	rs4975623	G	C	1849.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.43;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr5	1232775	rs6858999	T	A	1352.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr5	1240848	rs6554684	A	C	2471.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr5	1243009	rs7721679	A	G	2988.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr5	1244286	.	T	C	67	.	AC=2;AF=1.00;AN=2;BRF=0.41;FR=1.0000;HP=5;HapScore=2;MGOF=4;MMLQ=25;MQ=60.0;NF=2;NR=2;PP=67;QD=25.4428031368;SC=ACACCTCCACTCCCCATCCCC;SbPval=0.52;Source=Platypus;TC=5;TCF=3;TCR=2;TR=4;WE=1244294;WS=1244276;set=Platypus	GT:AD:AF:DP	1/1:1,4:0.80:5
chr5	1244425	rs4073918	C	T	5408.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr5	1260515	.	GCA	G	222.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.722;ClippingRankSum=0.000;DP=241;ExcessHet=3.0103;FS=0.772;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=4.703;QD=0.96;ReadPosRankSum=-1.261;SOR=0.541;set=HC	GT:AD:AF:DP	0/1:204,28:0.12:232
chr5	1271524	rs11133719	T	C	849.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:2,34:0.94:36
chr5	1280128	rs7734992	T	C	974.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr5	1320722	rs402710	C	T	998.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr5	1321873	rs10073340	C	T	6153.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr5	1325767	rs466502	A	G	1312.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr5	1325803	rs465498	A	G	2558.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr5	1330253	rs452932	T	C	2404.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr5	1344458	rs31490	G	A	10578.77	.	AC=2;AF=1.00;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	1/1:3,400:0.99:403
chr5	1400931	rs28363149	A	ATCTACACCAGCCCTG	13964.73	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:1,298:1.00:299
chr5	1409127	rs429699	T	C	3123.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr5	1409719	rs2245660	C	T	1325.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr5	1416142	rs40358	C	A	6859.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:1,252:1.00:253
chr5	1432825	rs460000	G	T	3915.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr5	1432876	rs465130	G	A	2807.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.29;SOR=2.670;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr5	1432881	rs465989	C	T	2637.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.71;SOR=3.076;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr5	1442974	rs2254408	C	A	5546.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.37;SOR=1.215;set=HC	GT:AD:AF:DP	1/1:0,125:1.00:125
chr5	1442979	rs2270914	C	T	5768.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.05;SOR=1.196;set=HC	GT:AD:AF:DP	1/1:0,134:1.00:134
chr5	1470900	rs2277005	G	A	7711.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:3,296:0.99:299
chr5	1471109	rs27054	T	C	1369.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr5	1479678	rs27059	G	C	2554.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr5	1481135	rs139885091	CAGGGCCTGCACCA	C	4071.73	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:2,95:0.98:97
chr5	1524018	.	G	A	218.78	.	AC=2;AF=1.00;AN=2;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr5	1594664	rs4246747	C	G	424.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr5	1632758	rs71597631	C	G	867.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:56,38:0.40:94
chr5	1632941	rs112756556	T	G	1921.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:93,96:0.51:189
chr5	1708983	rs12523324	G	A	4191.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:1,153:0.99:154
chr5	1801689	rs2242412	A	C	985.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr5	1815821	rs10078791	C	T	643.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr5	1815950	rs10058270	T	C	4654.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.680;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.00;ReadPosRankSum=-0.802;SOR=0.985;set=HC	GT:AD:AF:DP	1/1:2,177:0.99:179
chr5	1878440	rs1689717	C	T	5144.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:2,187:0.99:189
chr5	1880891	rs2232376	C	T	6294.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr5	1881828	rs2232375	C	A	2266.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr5	1882788	rs2232372	C	T	523.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr5	1882900	rs6876836	C	T	70.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr5	3596518	rs3749631	G	T	560.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.38;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr5	3600334	rs844154	T	C	10230.77	.	AC=2;AF=1.00;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	1/1:0,393:1.00:393
chr5	3610658	rs1373997	T	C	419.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	4087485	rs6869319	G	T	1087.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.53;SOR=0.741;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr5	4095642	rs72043926	T	TCTTTC	443.84	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.967;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.81;MQRankSum=-0.589;QD=36.99;ReadPosRankSum=1.161;SOR=2.147;set=HC	GT:AD:AF:DP	0/1:1,11:0.92:12
chr5	4095679	.	T	TTTTCTTTTCTTTTC	676.73	.	AC=2;AF=1.00;AN=2;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=63.49;QD=39.81;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	4420188	rs140931368	G	GTGTA	4554.73	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:10,180:0.95:190
chr5	4702352	.	T	TGG	207.92	.	AC=2;AF=1.00;AN=2;DP=11;set=Intersection	GT:AD:AF:DP	1/1:1,7:0.88:8
chr5	4702461	.	C	T	45	.	AC=2;AF=1.00;AN=2;BRF=0.0;FR=1.0000;HP=4;HapScore=2;MGOF=7;MMLQ=22;MQ=60.0;NF=0;NR=3;PP=45;QD=26.5904041824;SC=TTTTGTTAATCTTTGGTCTAT;SbPval=1.0;Source=Platypus;TC=3;TCF=0;TCR=3;TR=3;WE=4702469;WS=4702451;set=Platypus	GT:AD:AF:DP	1/1:0,3:1.00:3
chr5	4930051	rs27416	G	T	931.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr5	5140632	rs270208	T	C	718.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:1,27:0.96:28
chr5	5140958	rs270207	T	A	3081.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:2,74:0.97:76
chr5	5140970	rs270206	C	T	2840.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr5	5141009	rs59628659	CT	C	108.87	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.469;ClippingRankSum=-0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.07;ReadPosRankSum=-0.035;SOR=2.093;set=HC	GT:AD:AF:DP	0/1:2,10:0.83:12
chr5	5146223	rs1871468	G	C	6031.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:1,227:1.00:228
chr5	5146335	rs2086310	C	G	6967.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:1,258:1.00:259
chr5	5146377	rs1019747	T	C	5256.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:2,194:0.99:196
chr5	5186412	.	A	AGG	474	.	AC=1;AF=0.500;AN=2;BRF=0.49;FR=0.5000;HP=3;HapScore=2;MGOF=7;MMLQ=21;MQ=65.33;NF=2;NR=30;PP=474;QD=16.9971877637;SC=TGCACTTCGTAGGGTGTGTGT;SbPval=0.5;Source=Platypus;TC=38;TCF=2;TCR=36;TR=32;WE=5186425;WS=5186402;set=Platypus	GT:AD:AF:DP	0/1:6,32:0.84:38
chr5	5186414	.	G	GGGGT	440.73	.	AC=1;AF=0.500;AN=2;DP=69;set=Intersection	GT:AD:AF:DP	0/1:7,19:0.73:26
chr5	5189950	rs6859975	G	A	751.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr5	5189978	rs72647746	C	T	1191.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr5	5200234	rs1896622	C	G	5126.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr5	5200430	rs16875038	C	T	1786.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr5	5222980	.	A	T	2403.77	.	AC=1;AF=0.500;AN=2;DP=239;set=Intersection	GT:AD:AF:DP	0/1:118,119:0.50:237
chr5	5223073	rs12652968	A	G	3457.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:1,130:0.99:131
chr5	5235001	rs57587005	A	G	143.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=68.43;QD=23.97;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr5	5235001	.	A	AG	262	.	AC=2;AF=1.00;AN=2;BRF=0.26;FR=1.0000;HP=18;HapScore=2;MGOF=33;MMLQ=24;MQ=65.96;NF=6;NR=3;PP=262;QD=29.4444444444;SC=AAAAAAAAAAAGAATCCACTT;SbPval=0.54;Source=Platypus;TC=10;TCF=7;TCR=3;TR=9;WE=5235009;WS=5234991;set=Platypus	GT:AD:AF:DP	1/1:1,9:0.90:10
chr5	5235028	rs2913630	T	C	459.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr5	5235096	rs2913631	A	G	1866.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr5	5262766	rs34433845	G	A	5142.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr5	5303349	rs11959893	T	C	561.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr5	5436609	rs2578552	G	A	3271.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:2,126:0.98:128
chr5	5437380	rs2578550	C	T	1746.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr5	5443179	rs2578554	G	A	284.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.73;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	6020374	rs464221	A	G	3029.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr5	6020418	rs457263	T	G	2204.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr5	6020488	rs412953	C	T	840.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr5	6312877	.	CAC	GAG	213	.	AC=1;AF=0.500;AN=2;BRF=0.54;FR=0.6699;HP=2;HapScore=2;MGOF=82;MMLQ=27;MQ=58.88;NF=2;NR=4;PP=213;QD=44.411312477;SC=CACACACACACACAGAGAGAG;SbPval=0.4;Source=Platypus;TC=9;TCF=2;TCR=7;TR=6;WE=6312887;WS=6312867;set=Platypus	GT:AD:AF:DP	0/1:3,6:0.67:9
chr5	6337065	rs147195078	T	TACACACACACAC	839.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr5	6378614	rs7723985	G	C	10794.77	.	AC=2;AF=1.00;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	1/1:0,399:1.00:399
chr5	6737571	rs2279657	A	G	1074.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr5	6739039	rs573304	T	G	436.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr5	6748518	rs274682	A	G	1485.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr5	6748659	rs274681	T	C	8104.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:1,307:1.00:308
chr5	6748810	rs2279653	G	A	2802.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr5	6754762	rs274676	T	C	1569.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr5	7306522	rs62341811	G	A	1279.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr5	7306615	rs11955700	A	G	1820.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.08;QD=23.96;SOR=2.124;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr5	7306748	rs56373287	T	A	1750.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr5	7695845	rs11134251	C	A	3865.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr5	7696028	rs11134252	C	T	1536.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr5	7712810	rs6555488	C	T	203.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr5	7717396	rs6878196	T	C	1383.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr5	7757704	.	G	GCCCCAGAGCA	1872.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.55;SOR=3.417;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr5	7757705	.	T	TGGCCGTGTTCAACATGGTAAGC	1873.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=50.64;SOR=4.351;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr5	7757715	rs4479814	C	T	1096.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.87;SOR=5.058;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr5	7802363	rs2290910	C	T	2837.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:1,106:0.99:107
chr5	7826648	rs141881348	AAAC	A	727.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	7826680	rs6887726	T	C	1050.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr5	7835616	rs34574678	G	GA	5344.73	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:1,223:1.00:224
chr5	7835685	rs179044	G	T	3172.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr5	7850898	.	TGCCCAGCCGCCCAGCC	T	730.73	.	AC=2;AF=1.00;AN=2;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	7863112	.	T	TA	2178.73	.	AC=2;AF=1.00;AN=2;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr5	7896957	.	C	CT	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.755;ClippingRankSum=0.000;DP=118;ExcessHet=3.0103;FS=1.025;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.33;ReadPosRankSum=-0.104;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:95,19:0.17:114
chr5	8461166	rs341899	T	C	1267.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr5	9043142	rs3834271	T	TA	815.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr5	9050410	rs257098	C	T	1239.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr5	9053945	rs257095	C	T	2294.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr5	9066464	rs786847	A	G	3269.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr5	9066802	rs786846	G	A	2917.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr5	9190404	rs1806095	G	A	2293.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr5	9190598	rs1806132	G	A	1089.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr5	9197434	rs3216958	A	AGAG	1369.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.019;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.16;MQRankSum=0.456;QD=40.29;ReadPosRankSum=0.204;SOR=0.651;set=HC	GT:AD:AF:DP	1/1:1,33:0.97:34
chr5	9201973	rs40683	C	T	828.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr5	9227108	rs201200984	A	AATAT	4210.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.451;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=2.608;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=0.238;QD=38.99;ReadPosRankSum=-0.586;SOR=0.205;set=HC	GT:AD:AF:DP	1/1:3,105:0.97:108
chr5	9280841	rs55821543	G	A	5256.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr5	9280957	rs6555597	C	A	3107.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr5	10227548	rs2136197	C	A	3613.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr5	10236927	rs2292263	C	T	2061.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr5	10250430	rs2548546	G	A	5609.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:2,211:0.99:213
chr5	10250443	rs2578618	T	C	4978.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:2,185:0.99:187
chr5	10254817	rs2578617	A	G	5161.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr5	10255021	rs2607294	T	C	1287.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr5	10255083	rs2578616	A	C	930.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	10256161	rs1042392	T	C	4191.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr5	10258125	rs2457156	G	A	2860.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr5	10261542	rs2607327	C	T	2985.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr5	10261966	rs2244717	G	A	1082.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr5	10262740	rs2578642	C	A	7808.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:1,297:1.00:298
chr5	10263451	.	TGGAG	T	2947	.	AC=2;AF=1.00;AN=2;BRF=0.35;FR=1.0000;HP=3;HapScore=1;MGOF=3;MMLQ=24;MQ=61.03;NF=9;NR=57;PP=2947;QD=20;SC=CGCCTCTGCGTGGAGGGGGGG;SbPval=0.47;Source=Platypus;TC=70;TCF=9;TCR=61;TR=66;WE=10263472;WS=10263441;set=Platypus	GT:AD:AF:DP	1/1:4,66:0.94:70
chr5	10263453	rs147103051	GA	G	4652.73	.	AC=2;AF=1.00;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.21;QD=42.30;SOR=1.631;set=HC	GT:AD:AF:DP	1/1:0,110:1.00:110
chr5	10263457	rs58620077	G	A	2765.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.435;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=3.044;MLEAC=2;MLEAF=1.000;MQ=60.11;MQRankSum=0.218;QD=28.51;ReadPosRankSum=-1.130;SOR=1.956;set=HC	GT:AD:AF:DP	1/1:2,95:0.98:97
chr5	10263461	rs370306096	GGGA	G	4200.73	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.17;SOR=1.994;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr5	10264962	rs544	A	G	558.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr5	10282396	rs10067744	A	G	1718.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr5	10282479	rs10052785	C	T	722.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr5	10417589	rs2967956	G	T	1210.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr5	10442496	rs2567577	T	C	2589.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr5	10448247	rs1976360	G	A	593.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	10505467	rs62362463	A	G	625.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr5	10505585	rs17816571	A	G	5147.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr5	10505851	rs373652829	TAAA	T	719.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.36;QD=28.79;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr5	10509069	rs1392005	C	T	836.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr5	10564846	rs814576	C	T	754.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr5	10565027	rs1103749	C	G	114.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr5	10624887	rs1531839	T	C	4341.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr5	10649784	rs113222960	G	A	693.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr5	10650150	rs56969869	A	G	1961.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:2,76:0.97:78
chr5	10650324	rs13354827	TT	GG	781.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr5	10664999	rs111384023	C	G	1625.78	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.53;MQRankSum=-0.243;QD=39.65;ReadPosRankSum=0.494;SOR=1.236;set=HC	GT:AD:AF:DP	1/1:2,39:0.95:41
chr5	10665004	rs115907161	C	T	1654.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.854;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.53;MQRankSum=-0.243;QD=40.36;ReadPosRankSum=0.225;SOR=1.236;set=HC	GT:AD:AF:DP	1/1:2,39:0.95:41
chr5	10665259	rs11954194	C	T	512.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr5	10748231	rs267944	C	T	5070.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr5	10748462	rs267943	C	T	1285.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr5	10761182	rs267927	A	G	674.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr5	11082762	rs2277053	T	C	5902.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr5	11084189	rs1024621	T	C	3577.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:2,129:0.98:131
chr5	11159657	rs1990003	T	C	1039.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr5	11412302	rs31750	C	T	886.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr5	13714740	rs30175	G	A	772.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:1,28:0.97:29
chr5	13719022	rs30169	T	G	2503.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr5	13719089	rs30168	G	A	5589.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr5	13769257	rs12655133	T	A	4501.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:1,167:0.99:168
chr5	13770757	rs138234449	C	CA	1036.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr5	13776487	rs34413787	C	T	3207.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:2,119:0.98:121
chr5	13810149	rs35732567	G	A	409.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr5	13810441	rs35058767	G	A	2157.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr5	13810529	rs31238	C	G	701.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr5	13811775	rs10078391	T	C	5012.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:1,190:0.99:191
chr5	13814682	rs56046501	T	C	2197.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr5	13815049	rs6890413	AG	CT	1558.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr5	13817881	rs6889720	G	A	2290.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr5	13850651	rs795528	T	C	493.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr5	13850750	rs6554820	A	G	1892.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr5	13851016	rs795526	C	T	606.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr5	13859743	rs1502043	G	T	4098.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.88;SOR=2.072;set=HC	GT:AD:AF:DP	1/1:0,147:1.00:147
chr5	13859807	rs1867677	G	T	1196.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr5	13862600	rs7724453	T	G	2270.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:1,81:0.99:82
chr5	13862616	rs7704417	C	T	2566.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:1,95:0.99:96
chr5	13864728	rs6554827	C	A	4013.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr5	13864885	rs6554828	G	A	397.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr5	13865717	rs7720415	A	G	358.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr5	13865980	rs7703349	T	C	760.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr5	13866450	rs11748811	A	G	2029.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr5	13867819	rs1445810	C	T	789.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr5	13867851	rs13156044	G	A	1134.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr5	13868103	rs35398031	TA	T	905.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr5	13870836	rs35621834	G	A	1869.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr5	13871925	rs10513159	A	G	701.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr5	13876664	rs1445804	T	C	1577.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr5	13883262	rs10462710	C	G	1832.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr5	13885023	rs147685082	GCA	G	868.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=32.18;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr5	13886244	rs34599109	CA	C	198.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.047;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=1.690;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.36;ReadPosRankSum=1.116;SOR=0.503;set=HC	GT:AD:AF:DP	0/1:8,19:0.70:27
chr5	13900345	rs1445823	A	G	2677.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:2,98:0.98:100
chr5	13902220	rs1530498	T	C	1951.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr5	13911700	rs34152978	GAA	G	846.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr5	13913885	rs3213936	A	G	4376.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr5	13914120	rs10513162	T	C	555.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr5	13914556	rs13179761	A	G	128.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr5	13914775	rs13180591	G	T	916.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr5	13914796	rs13162553	T	C	774.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr5	13914819	rs13180613	G	A	409.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	13916302	rs11750882	C	A	477.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr5	13928085	rs12659700	T	C	5401.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr5	13931205	rs1530497	G	C	4592.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr5	13931340	rs1530496	C	T	3039.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr5	13944512	rs339445	A	C	3078.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr5	14183866	rs354302	T	C	134.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr5	14183979	rs71597901	CAG	C	1607.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr5	14184022	rs354301	G	A	1124.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr5	14184079	rs354300	G	A	1709.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr5	14184211	rs354299	T	C	763.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr5	14184254	rs354298	A	G	501.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr5	14366840	rs30784	T	C	1114.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr5	14377962	rs30769	A	C	468.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	14378068	rs30770	T	G	2416.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr5	14388797	rs57751910	G	GT	194.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.032;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=2.617;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=2.018;QD=2.19;ReadPosRankSum=1.586;SOR=0.345;set=HC	GT:AD:AF:DP	0/1:61,28:0.31:89
chr5	14420027	rs30612	A	C	5891.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr5	14471666	rs27091	T	A	166.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr5	14472626	rs26186	T	C	1151.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr5	14476900	.	C	CA	284.50	.	AC=1;AF=0.500;AN=2;DP=28;set=Intersection	GT:AD:AF:DP	0/1:4,20:0.83:24
chr5	14479892	.	G	A	934.77	.	AC=2;AF=1.00;AN=2;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr5	14479938	rs26173	G	A	2154.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr5	14485161	.	G	GT	440.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.407;ClippingRankSum=0.000;DP=88;ExcessHet=3.0103;FS=4.447;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.19;ReadPosRankSum=-0.421;SOR=1.223;set=HC	GT:AD:AF:DP	0/1:51,34:0.40:85
chr5	14610184	rs25960	C	G	1494.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr5	14751399	rs697570	C	T	1182.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr5	14769103	rs17251667	G	A	4929.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:2,187:0.99:189
chr5	15927905	rs70938037	A	AAGAC	1521.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.65;QD=42.27;SOR=2.621;set=HC	GT:AD:AF:DP	1/1:1,35:0.97:36
chr5	15927927	rs66504704	A	G	2431.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr5	16091242	rs11389357	G	GA	407.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.39;SOR=3.716;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr5	16177807	rs2582666	A	G	2448.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr5	16179125	rs342550	C	T	739.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr5	16474778	.	C	CTT	355.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.828;ClippingRankSum=0.000;DP=77;ExcessHet=3.0103;FS=5.677;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=0.700;QD=5.08;ReadPosRankSum=1.215;SOR=0.242;set=HC	GT:AD:AF:DP	0/1:27,43:0.61:70
chr5	16477751	rs162850	C	A	1610.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:1,58:0.98:59
chr5	16478120	rs162849	A	G	1400.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr5	16478200	rs162848	G	A	1184.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:2,47:0.96:49
chr5	16479151	rs6883888	A	G	614.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	16479220	rs33692	A	G	260.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr5	16617099	rs35003	A	G	313.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr5	16667003	rs26743	C	T	3886.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr5	16667065	rs33273	C	G	1076.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr5	16670618	rs27431	C	T	805.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr5	16711365	rs3214558	CA	C	2827.73	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:9,146:0.94:155
chr5	16711451	rs27552	G	T	2340.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr5	16762646	rs31511	T	C	2537.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr5	16764255	rs375881422	CA	C	924.14	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:8,57:0.88:65
chr5	16766093	rs2561232	C	T	2878.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr5	16769273	rs11750538	G	A	1793.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr5	16783437	rs71595983	T	TAAAC	5790.73	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:4,134:0.97:138
chr5	16818363	rs12188582	A	G	701.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr5	16916045	rs141673286	G	A	914.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr5	16916071	rs145081788	GAA	G	930.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.887;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.61;MQRankSum=0.471;QD=19.39;ReadPosRankSum=-1.350;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:9,39:0.81:48
chr5	16916118	rs71609335	T	C	3111.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr5	17276053	rs59080603	CCT	C	843.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.894;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.78;MQRankSum=0.533;QD=26.37;ReadPosRankSum=-1.605;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:3,29:0.91:32
chr5	19473917	rs770303	G	A	1239.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr5	19520932	rs441865	T	C	4290.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr5	19721490	rs12187552	T	C	5685.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr5	21461786	rs4701564	T	A	1949.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr5	21751715	rs10657805	C	CAGAA	1184.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.15;QD=49.36;SOR=4.977;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr5	21751731	.	G	GTGTGTGTT	450.70	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.174;ClippingRankSum=0.000;DP=42;ExcessHet=3.0103;FS=4.031;MLEAC=1;MLEAF=0.500;MQ=61.53;MQRankSum=0.000;QD=15.02;ReadPosRankSum=0.300;SOR=2.636;set=HC	GT:AD:AF:DP	0/1:12,18:0.60:30
chr5	21751741	rs28638343	T	G	2066.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.01;QD=43.97;SOR=3.841;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr5	21752050	rs6451992	A	G	10071.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.37;SOR=0.936;set=HC	GT:AD:AF:DP	1/1:0,227:1.00:227
chr5	21752056	rs6451993	A	G	10143.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.69;SOR=0.958;set=HC	GT:AD:AF:DP	1/1:0,227:1.00:227
chr5	21760602	rs2303748	C	A	1497.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr5	22078584	rs4371716	C	T	8624.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,323:1.00:323
chr5	23510158	.	ATTT	A,ATT	508.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.864;ClippingRankSum=0.000;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.99;MQRankSum=-0.350;QD=10.38;ReadPosRankSum=0.772;SOR=0.746;set=HC	GT:AD:AF:DP	1/2:7,12,30:0.24,0.61:49
chr5	23510203	rs2973615	A	G	1247.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr5	23523348	rs1874165	C	T	4667.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr5	23527919	rs2099081	A	G	2775.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr5	24509643	rs62349562	C	T	3422.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:2,124:0.98:126
chr5	24509947	rs3797171	C	A	568.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr5	26905920	rs5866810	GT	G	571.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:1,31:0.97:32
chr5	31302288	rs2287582	C	T	4786.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr5	31317494	rs2302904	C	T	7182.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr5	31317529	rs2302903	A	G	8241.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr5	31317952	rs2229575	T	C	6049.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr5	31322851	rs2962790	A	G	2411.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr5	31401447	rs10719	A	G	6802.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:1,262:1.00:263
chr5	31435975	.	C	CA	56.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.760;ClippingRankSum=0.000;DP=125;ExcessHet=3.0103;FS=9.609;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.51;ReadPosRankSum=1.697;SOR=0.351;set=HC	GT:AD:AF:DP	0/1:92,19:0.17:111
chr5	31437459	rs370745854	A	C	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.180;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.25;ReadPosRankSum=-0.000;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:2,5:0.71:7
chr5	31483596	rs10052174	G	A	5310.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr5	31483753	rs11341915	GA	G	501.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.239;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=1.220;MLEAC=1;MLEAF=0.500;MQ=60.73;MQRankSum=1.766;QD=8.65;ReadPosRankSum=0.880;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:16,42:0.72:58
chr5	31485230	rs7712436	T	C	341.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr5	31486540	rs7735863	A	G	7684.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:2,290:0.99:292
chr5	31508933	rs56327412	G	GT	740.37	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.194;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.24;ReadPosRankSum=1.324;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:9,43:0.83:52
chr5	31511106	rs13183642	G	T	3084.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr5	31529299	rs6859527	A	G	1415.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.64;SOR=2.899;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr5	31529306	rs6450850	T	C	1358.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.29;SOR=3.407;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr5	31532429	rs2291109	A	T	2704.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr5	31538692	rs17410000	A	C	5849.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:1,213:1.00:214
chr5	31541142	rs17410035	G	T	1125.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr5	31541212	.	AGT	A	47.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.828;ClippingRankSum=-0.000;DP=21;ExcessHet=3.0103;FS=2.480;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.18;ReadPosRankSum=0.997;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:10,5:0.33:15
chr5	32000483	rs10054504	T	C	1986.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr5	32057651	rs161545	G	A	461.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr5	32057910	.	G	GT	96.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.911;ClippingRankSum=0.000;DP=180;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.58;ReadPosRankSum=-1.372;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:137,29:0.17:166
chr5	32058115	rs151861	A	G	6782.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr5	32060985	rs35665699	T	TATC	2011.73	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr5	32101168	rs2279232	A	T	4435.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr5	32135599	rs161539	G	A	2669.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr5	32242340	.	A	AT	179.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.330;ClippingRankSum=0.000;DP=82;ExcessHet=3.0103;FS=1.143;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.85;ReadPosRankSum=-0.206;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:45,18:0.29:63
chr5	32242381	rs7729256	G	T	1005.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr5	32379210	rs1862636	G	A	6059.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr5	32385865	rs7718350	G	A	186.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.38;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr5	32385870	rs7718355	G	A	186.90	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.73;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr5	32388471	rs889318	T	C	857.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr5	32403346	rs4867440	C	T	8580.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,319:1.00:319
chr5	32415360	rs5867145	TA	T	840.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr5	32417694	rs178935	G	A	2325.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr5	32419849	rs324428	T	C	1264.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr5	32444199	rs2922295	C	G	885.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr5	32444286	rs183443	A	G	2213.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr5	32523114	rs681162	T	A	4199.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr5	32523343	rs2457151	C	T	4958.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr5	32591804	.	AT	A	151.27	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.201;ClippingRankSum=0.000;DP=84;ExcessHet=3.0103;FS=1.510;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.15;ReadPosRankSum=-1.288;SOR=0.883;set=HC	GT:AD:AF:DP	0/1:26,22:0.46:48
chr5	32710965	.	G	GT	187.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.406;ClippingRankSum=0.000;DP=164;ExcessHet=3.0103;FS=0.863;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.000;QD=1.63;ReadPosRankSum=-1.368;SOR=0.528;set=HC	GT:AD:AF:DP	0/1:85,30:0.26:115
chr5	32711000	.	ATG	A	42.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.069;ClippingRankSum=0.000;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.79;ReadPosRankSum=1.507;SOR=0.351;set=HC	GT:AD:AF:DP	0/1:47,7:0.13:54
chr5	32725072	rs1147224	T	C	738.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr5	32786465	.	C	CT	449.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.095;ClippingRankSum=0.000;DP=399;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.25;ReadPosRankSum=-1.733;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:288,73:0.20:361
chr5	33441403	rs55759090	A	C	785.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr5	33448962	rs5867190	A	AT	826.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr5	33453295	.	AC	A	336.73	.	AC=2;AF=1.00;AN=2;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.90;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr5	33453368	rs35931457	CT	C	269.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.339;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=1.075;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.65;ReadPosRankSum=0.438;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:35,39:0.53:74
chr5	33455943	rs55749081	AT	A	1658.73	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.40;QD=23.36;SOR=1.643;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr5	33457535	rs2270903	T	A	2452.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr5	33457618	rs1003000	G	A	947.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr5	33458636	rs3765145	G	A	5754.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr5	33458833	rs3765146	T	C	1376.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr5	33458881	rs3765147	G	A	625.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr5	33561028	rs35553442	GA	G	435.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.845;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=2.424;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.38;ReadPosRankSum=1.296;SOR=1.923;set=HC	GT:AD:AF:DP	0/1:17,35:0.67:52
chr5	33595996	rs10461924	C	T	4898.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr5	33596193	rs10461925	A	G	1165.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr5	33596224	rs10461703	C	T	627.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	33596243	rs10461704	C	T	496.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	33615904	rs10057235	G	A	2377.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr5	33616311	rs4078398	T	C	1169.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr5	33624496	rs34333679	G	A	1561.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr5	33631142	rs7444287	C	G	834.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr5	33637596	rs4076945	G	A	869.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr5	33637891	rs4076946	C	A	2503.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.17;SOR=1.493;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr5	33637899	rs4076947	G	A	2405.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.39;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr5	33642163	rs60892887	G	A	2396.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr5	33643395	rs10066043	A	T	1194.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr5	33643617	rs4866409	C	T	5247.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:1,195:0.99:196
chr5	33648842	rs34079160	GTT	G	592.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr5	33648906	rs6870538	G	C	1522.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr5	33649220	rs4866353	A	G	936.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr5	33649637	rs4242082	G	A	1048.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr5	33649807	rs4504387	C	A	3510.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr5	33649905	rs4621563	G	A	1334.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;MQ=60.43;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr5	33951693	rs16891982	C	G	2793.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr5	33954511	rs2287949	T	C	2627.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr5	33963731	rs141348470	AAAC	A	1561.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr5	33964210	rs183671	T	G	2264.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr5	33964241	rs6451048	A	G	1433.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr5	33969170	.	C	CTGTGTGTGTG	888.73	.	AC=1;AF=0.500;AN=2;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=30.65;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:3,26:0.90:29
chr5	33989518	rs2278008	C	T	6615.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr5	33994116	rs10472909	A	T	797.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr5	33994316	rs11742345	G	A	210.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr5	33998883	rs2287939	A	G	4638.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr5	34004707	rs10941112	C	T	4029.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr5	34008100	rs3195676	C	T	10188.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:0,381:1.00:381
chr5	34008206	rs3217251	CCGGCGCCACGCCCCCAGCCG	C	3012.73	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr5	34687911	rs2279604	G	A	2505.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr5	34688210	rs142375133	CGACAAA	C	5768.73	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr5	34803675	rs66603667	AC	A	622.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.31;SOR=2.737;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	34863220	rs3846632	G	T	495.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr5	34880750	.	CT	C	211.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.654;ClippingRankSum=0.000;DP=65;ExcessHet=3.0103;FS=1.406;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.15;ReadPosRankSum=1.550;SOR=0.585;set=HC	GT:AD:AF:DP	0/1:25,26:0.51:51
chr5	34945812	rs6868348	A	G	468.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.67;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr5	34954588	rs37437	T	C	1510.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr5	35003683	rs11426533	C	CT	390.14	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:5,25:0.83:30
chr5	35010138	rs466067	A	G	8232.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr5	35026683	rs344513	A	G	4027.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.15;SOR=1.194;set=HC	GT:AD:AF:DP	1/1:0,154:1.00:154
chr5	35026699	rs61293163	G	GA	199.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.274;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.907;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.04;ReadPosRankSum=1.815;SOR=0.566;set=HC	GT:AD:AF:DP	0/1:73,25:0.26:98
chr5	35033047	rs2291698	C	T	3634.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr5	35033526	rs2291701	C	T	3141.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:4,121:0.97:125
chr5	35033605	rs180749	G	A	2646.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr5	35037006	rs171081	T	C	2949.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr5	35700598	rs6451206	T	C	5279.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr5	35702209	rs35297265	G	A	646.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	35702212	rs11357084	GA	G	637.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	35702306	rs6874120	A	G	2280.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr5	35704584	rs7448971	C	T	735.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr5	35704892	rs10058349	G	A	562.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	35709095	rs13170082	C	T	4418.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr5	35709184	rs13170390	G	C	4792.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr5	35712780	rs10078803	A	G	1175.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr5	35713007	rs10073537	T	G	2393.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:1,88:0.99:89
chr5	35739960	rs10043875	A	G	405.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr5	35753715	rs11957963	T	C	1057.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr5	35763877	rs11298650	AG	A	2754.73	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr5	35763895	rs6876874	T	C	2356.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr5	35763916	rs6895801	A	G	1681.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr5	35764587	rs4869466	G	A	3110.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr5	35764603	rs4869467	A	G	3663.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr5	35764696	rs4242258	C	T	7789.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr5	35792356	rs7730148	A	C	534.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	35795738	rs716971	T	C	178.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr5	35799994	rs3822735	A	G	2716.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr5	35857177	rs1353252	G	C	5915.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr5	35857235	rs1494561	C	G	3608.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr5	35857262	rs1353250	A	G	2621.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr5	35857308	rs5867289	T	TC	1773.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr5	35861068	rs1494558	T	C	6288.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr5	35871190	rs1494555	G	A	4454.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr5	35875593	rs987106	A	T	6811.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr5	35876274	rs3194051	A	G	2953.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr5	35904614	rs1833907	G	T	2308.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr5	35921069	rs6859892	T	C	9082.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	1/1:0,335:1.00:335
chr5	35921266	rs3734107	G	A	937.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr5	35954588	rs700164	C	T	4451.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr5	35962984	rs1070895	A	G	4293.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr5	35965970	rs3756669	A	C	2434.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr5	35968000	rs10491431	C	A	1431.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr5	36037778	rs2247611	G	A	1404.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr5	36051834	rs72303780	ATCCG	A	1164.73	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:5,29:0.85:34
chr5	36111167	rs43189	A	T	231.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr5	36123065	rs141044130	TA	T	44.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.727;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.15;ReadPosRankSum=0.016;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:28,11:0.28:39
chr5	36124514	rs13177876	A	G	518.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	36136675	rs267758	C	T	4168.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr5	36137620	rs267759	A	G	265.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr5	36141386	rs13156321	T	A	1289.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr5	36142589	rs267764	T	A	2362.73	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr5	36142648	rs12658867	A	G	5475.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr5	36143392	rs267766	C	T	3488.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr5	36166827	rs34784319	C	CT	356.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.552;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=3.114;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.30;ReadPosRankSum=0.081;SOR=0.334;set=HC	GT:AD:AF:DP	0/1:16,27:0.63:43
chr5	36168582	rs7736391	T	C	2803.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr5	36176874	rs40030	G	A	592.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr5	36201336	rs7705396	C	T	1158.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr5	36207424	rs2303163	G	T	5187.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr5	36217764	rs111441491	G	GTTAATCA	3872.73	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr5	36217997	rs3761973	T	A	4192.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr5	36241955	rs74717771	T	C	1818.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr5	36241988	rs34888491	G	C	1312.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr5	36253937	rs4869473	G	A	6170.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr5	36260976	rs6881086	T	A	1072.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr5	36262256	rs2362977	G	C	337.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr5	36268218	rs6869599	A	G	1977.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr5	36269551	rs1035480	G	C	4354.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr5	36271491	rs5867310	CT	C	283.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	36680713	rs3733811	C	T	2777.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr5	36683809	rs11284736	CA	C	149.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.070;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=1.922;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.81;ReadPosRankSum=-1.723;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:8,14:0.64:22
chr5	36683888	rs11748249	G	A	2103.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr5	36686404	rs2229894	G	A	1022.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr5	36958085	rs141750225	CAA	C	329.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=19.40;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:3,14:0.82:17
chr5	37007629	rs159753	T	C	347.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr5	37010404	rs35011787	A	G	348.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	37019354	rs300060	G	A	470.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	37036449	rs10554564	GTA	G	105	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.25;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr5	37036492	rs61748200	C	T	119.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr5	37061261	rs188541	A	G	171.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr5	37125560	rs3832339	CAGATA	C	941.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	37247700	rs6876576	G	A	2338.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr5	37247900	rs70976289	A	AT	74.25	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.25;ReadPosRankSum=-1.915;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:2,7:0.78:9
chr5	37294473	rs1045908	T	C	2141.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr5	37307299	rs34995492	C	CA	94.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.652;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=4.771;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.26;ReadPosRankSum=0.628;SOR=2.985;set=HC	GT:AD:AF:DP	0/1:6,12:0.67:18
chr5	37309371	rs3835198	TAGA	T	3525.73	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr5	37318295	rs217797	G	T	1008.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr5	37331985	rs13170025	G	T	1624.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr5	37341352	rs13172306	T	C	4859.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:2,189:0.99:191
chr5	37364443	rs217852	C	T	4343.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr5	37370887	.	C	T	1098.77	.	AC=2;AF=1.00;AN=2;DP=44;set=Intersection	GT:AD:AF:DP	1/1:2,42:0.95:44
chr5	37516809	rs13176408	A	T	483.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.83;QD=40.31;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	37516812	rs199976916	TAC	T	445.73	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.98;QD=44.57;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	37724932	rs3214462	CATT	C	805.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr5	37724990	rs7444391	G	A	1312.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr5	37752415	rs1549252	A	G	287.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr5	37752460	rs1549251	T	C	660.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr5	37752497	rs2973079	A	G	1025.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr5	38482504	rs2256595	C	T	138.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr5	38504303	rs16903989	A	T	342.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr5	38510481	rs34968906	AC	A	1890.73	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:1,65:0.98:66
chr5	38512154	rs1037033	T	C	1028.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr5	38528969	rs71604901	CACACACACACAG	C	1358.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.495;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.63;MQRankSum=0.879;QD=23.43;ReadPosRankSum=-0.675;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:11,47:0.81:58
chr5	38530485	rs11293177	CA	C	188.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	38820695	rs446650	G	A	2119.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr5	38820802	rs542867	A	C	1359.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr5	38820823	rs113106049	C	CAT	1048.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr5	38820839	rs640966	C	T	864.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr5	38823254	rs369886	C	T	2719.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr5	38823318	rs142353288	G	GTGCA	4559.73	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:2,105:0.98:107
chr5	38823462	rs12651783	A	G	5977.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr5	38876573	rs357271	T	C	1139.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr5	38881603	rs2278324	G	T	867.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr5	38904363	rs1239334	C	T	880.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr5	38917574	rs357260	G	A	1225.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr5	38917904	rs357262	G	C	336.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr5	38923171	rs357293	T	C	859.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr5	38931919	rs357277	G	A	2463.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr5	38942403	rs41271097	A	C	4883.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:4,187:0.98:191
chr5	38942554	rs200385182	A	AT	111.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.293;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.86;ReadPosRankSum=0.876;SOR=0.487;set=HC	GT:AD:AF:DP	0/1:42,18:0.30:60
chr5	38950776	rs2115949	G	A	4614.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr5	38953427	rs2115948	T	C	341.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	38953447	rs2115947	T	A	715.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr5	38953665	rs33912683	G	GA	601.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:1,30:0.97:31
chr5	38954994	rs9292726	T	C	1339.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr5	38958968	rs6868591	A	C	594.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.32;SOR=2.200;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr5	38958968	.	AA	CA	181	.	AC=1;AF=0.500;AN=2;BRF=0.31;FR=0.4993,0.5007;HP=13;HapScore=4;MGOF=32;MMLQ=28;MQ=58.88;NF=0,4;NR=5,17;PP=21,181;QD=5.0;SC=AAAAAAAAAAAAACTTCAGCA;SbPval=1.0;Source=Platypus;TC=24;TCF=2;TCR=22;TR=5,21;WE=38958976;WS=38958958;set=Platypus	GT:AD:AF:DP	0/1:8,21:0.72:29
chr5	38958968	.	AA	ACA	181	.	AC=1;AF=0.500;AN=2;BRF=0.31;FR=0.4993,0.5007;HP=13;HapScore=4;MGOF=32;MMLQ=28;MQ=58.88;NF=0,4;NR=5,17;PP=21,181;QD=5.0;SC=AAAAAAAAAAAAACTTCAGCA;SbPval=1.0;Source=Platypus;TC=24;TCF=2;TCR=22;TR=5,21;WE=38958976;WS=38958958;set=Platypus	GT:AD:AF:DP	0/1:19,5:0.21:24
chr5	38959794	rs2115946	T	C	494.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr5	38962543	rs7729745	A	G	1393.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.33;SOR=1.436;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr5	38966903	rs11435048	A	AT	510.06	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.213;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.71;MQRankSum=1.085;QD=12.44;ReadPosRankSum=-0.537;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:7,34:0.83:41
chr5	38971912	rs7732615	T	A	678.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.14;SOR=0.922;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr5	38990944	.	G	GAT	641	.	AC=2;AF=1.00;AN=2;BRF=0.31;FR=1.0000;HP=1;HapScore=1;MGOF=26;MMLQ=28;MQ=64.29;NF=23;NR=2;PP=641;QD=26.2;SC=TGAGATATATGAGATATATGA;SbPval=0.59;Source=Platypus;TC=25;TCF=23;TCR=2;TR=25;WE=38990965;WS=38990934;set=Platypus	GT:AD:AF:DP	1/1:0,25:1.00:25
chr5	38990946	.	G	T	640	.	AC=2;AF=1.00;AN=2;BRF=0.31;FR=1.0000;HP=2;HapScore=1;MGOF=26;MMLQ=28;MQ=63.81;NF=25;NR=2;PP=640;QD=24.9915263906;SC=AGATATATGAGATATATGATA;SbPval=0.87;Source=Platypus;TC=30;TCF=26;TCR=4;TR=27;WE=38990965;WS=38990934;set=Platypus	GT:AD:AF:DP	1/1:3,27:0.90:30
chr5	38990957	.	T	G	882	.	AC=2;AF=1.00;AN=2;BRF=0.31;FR=1.0000;HP=2;HapScore=1;MGOF=26;MMLQ=26;MQ=62.95;NF=29;NR=8;PP=882;QD=24.7776003391;SC=ATATATGATATATATATGATA;SbPval=0.52;Source=Platypus;TC=38;TCF=30;TCR=8;TR=37;WE=38990965;WS=38990934;set=Platypus	GT:AD:AF:DP	1/1:1,37:0.97:38
chr5	38990957	.	T	TATGAGATATATGATATATATATGATAG	1663.73	.	AC=2;AF=1.00;AN=2;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=65.74;QD=63.99;SOR=5.136;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr5	39021369	rs13177690	G	A	735.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr5	39074296	rs2303808	G	C	16378.77	.	AC=2;AF=1.00;AN=2;DB;DP=628;set=Intersection	GT:AD:AF:DP	1/1:6,621:0.99:627
chr5	39107353	rs404122	T	A	123.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr5	39108309	rs377022	A	G	935.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr5	39108322	rs430630	A	G	838.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr5	39119723	rs379707	C	A	1597.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr5	39342308	rs476569	C	T	1556.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr5	39364339	rs700231	T	C	1589.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:1,56:0.98:57
chr5	39364358	rs700232	G	A	2287.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:1,83:0.99:84
chr5	39364554	rs700233	G	A	3801.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr5	39390061	rs2855512	C	A	1589.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr5	40728383	.	C	CAAAAAAAAAA	431.73	.	AC=2;AF=1.00;AN=2;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=107.93;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr5	40772071	rs837103	C	G	1486.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr5	40852451	rs188934	C	G	6811.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr5	40854682	rs1697938	T	C	503.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr5	40928574	rs2443040	A	C	437.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	40928792	rs2459467	T	A	1212.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr5	40931357	rs2271709	A	G	851.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr5	40936669	rs16870528	C	T	1375.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr5	40950157	rs149156108	C	CT	654.70	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:6,35:0.85:41
chr5	40964816	rs7713884	C	A	1316.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr5	40972111	rs10805655	C	T	4152.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr5	40972769	rs34641824	G	A	451.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr5	40979790	rs2876849	A	T	671.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.87;SOR=1.136;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr5	40980102	rs2292727	C	T	788.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr5	40981375	rs3749519	G	A	590.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr5	40981398	rs41271065	C	T	985.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr5	40998196	rs704040	T	C	2969.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr5	40998235	rs722575	C	T	2260.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr5	40998814	rs2876850	T	A	3149.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr5	40999900	rs1376175	T	A	668.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr5	41000243	rs1376177	G	A	822.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr5	41000343	rs1001420	G	A	2775.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr5	41001023	rs2167229	G	A	1426.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr5	41004396	rs7712140	G	T	2418.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.51;SOR=1.893;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr5	41004406	rs7711722	A	T	2725.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.68;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr5	41004807	rs2305314	C	T	824.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr5	41005791	rs10941529	T	C	3084.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr5	41008780	rs2271704	A	G	4040.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:2,154:0.99:156
chr5	41012615	rs6876879	AA	GC	2989.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr5	41019229	rs896118	A	T	774.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr5	41032998	rs325831	A	G	2715.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr5	41033112	rs4957367	G	A	6618.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr5	41033931	.	C	CTATCTATT	2667.73	.	AC=2;AF=1.00;AN=2;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=66.00;QD=41.68;SOR=6.358;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr5	41034181	rs325833	A	G	2371.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr5	41039000	rs325849	A	G	2384.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr5	41039079	rs73750227	T	C	961.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr5	41039430	rs7700901	G	C	125.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr5	41042284	rs325854	G	T	2449.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr5	41045730	rs11297360	CT	C	1143.73	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr5	41045768	rs325860	G	A	3130.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr5	41045835	rs6864243	C	G	6090.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr5	41049389	rs325863	T	C	6075.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.35;SOR=0.737;set=HC	GT:AD:AF:DP	1/1:0,137:1.00:137
chr5	41049397	rs325864	C	T	6072.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.69;SOR=0.767;set=HC	GT:AD:AF:DP	1/1:0,139:1.00:139
chr5	41050999	rs325866	C	T	1976.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr5	41057562	rs618334	T	C	1390.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr5	41061716	rs865093	A	G	4489.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:2,177:0.99:179
chr5	41064842	rs77397927	C	T	174.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr5	41149235	rs1014587	A	G	1210.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr5	41154150	rs4957374	A	C	1707.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:2,62:0.97:64
chr5	41158671	rs10075985	T	C	1696.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr5	41158863	rs6866352	G	A	4966.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr5	41381901	rs35812696	T	TC	511.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr5	41382691	rs545358	C	A	2830.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr5	41475766	rs318039	C	T	5630.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:4,216:0.98:220
chr5	41739684	rs33967331	G	A	1717.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr5	41803415	rs34569700	C	T	440.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr5	41805575	rs16871955	G	C	1353.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr5	41842746	rs13164201	T	C	4366.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr5	41843797	rs4957430	C	T	5843.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr5	41927423	rs277414	A	G	1001.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr5	42647676	.	C	CA	57.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.474;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.23;ReadPosRankSum=0.823;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:35,12:0.26:47
chr5	42700044	rs6179	A	G	4837.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:1,179:0.99:180
chr5	42713472	rs33972388	TG	T	1823.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr5	42718335	rs76362844	G	A	508.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr5	42719239	rs6180	A	C	6150.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr5	42769844	rs1109882	G	T	604.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr5	42779686	rs11427149	G	GA	946.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr5	42779736	rs1423656	T	G	836.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.15;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr5	42779821	rs33987951	GT	G	103.77	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr5	43066774	rs316408	T	C	3145.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr5	43120098	rs511340	A	G	1835.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr5	43161337	rs903391	A	G	1800.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:1,70:0.99:71
chr5	43487874	rs3776423	T	G	378.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	43492265	rs6876588	T	C	605.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	43492978	rs10039298	G	A	5326.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr5	43493592	rs7732089	T	C	700.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr5	43493818	rs187283967	T	C	1175.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:4,43:0.91:47
chr5	43505993	rs7710628	A	G	3942.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr5	43509348	rs6872851	T	A	3108.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr5	43509462	rs11415989	T	TC	1598.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr5	43527673	rs4318791	C	G	562.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr5	43530035	rs6866325	G	C	3802.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr5	43533992	rs11741521	A	G	669.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr5	43535754	rs6869933	G	C	798.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.77;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr5	43556178	rs146615230	T	A	835.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:1,31:0.97:32
chr5	43609272	rs12187908	T	C	4639.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr5	43609343	rs10057103	C	T	5573.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr5	43612984	rs139409541	T	TA	1731.73	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr5	43656074	rs75710404	C	T	4314.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr5	49963235	rs62366937	C	T	56.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr5	50040778	rs282561	T	C	115.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.76;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr5	50045967	rs2442107	G	T	2639.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:2,110:0.98:112
chr5	50046139	rs282553	A	G	459.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	50052800	rs282551	T	C	830.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr5	50052888	rs282550	C	A	2930.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr5	50053015	rs282549	G	A	4310.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr5	50055456	rs201071119	C	CT	393.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.887;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=2.363;MLEAC=1;MLEAF=0.500;MQ=60.34;MQRankSum=0.000;QD=14.58;ReadPosRankSum=1.417;SOR=0.223;set=HC	GT:AD:AF:DP	1/1:4,23:0.85:27
chr5	50057729	rs282547	G	A	1584.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr5	50122645	.	G	GT	120.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.022;ClippingRankSum=0.000;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.80;ReadPosRankSum=1.286;SOR=0.538;set=HC	GT:AD:AF:DP	0/1:49,18:0.27:67
chr5	52084365	rs10067659	G	C	3106.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr5	52084441	rs2897351	C	A	1267.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr5	52096889	rs1499280	C	A	5596.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr5	52157374	rs2447867	T	C	3594.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr5	52161500	rs11427012	G	GC	5025.73	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr5	52193287	rs1531545	C	T	3541.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr5	52193414	rs377107895	C	CA	6737.73	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr5	52193442	rs77853563	A	G	5414.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr5	52201722	rs4145748	C	T	3151.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr5	52204943	rs1478441	C	T	1460.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr5	52214581	rs2279587	G	A	1383.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr5	52229745	rs12520591	T	G	1977.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:1,77:0.99:78
chr5	52235802	rs1904165	T	G	1942.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr5	52235853	rs9637769	C	T	1071.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr5	52243059	rs3764924	A	G	561.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	52337908	rs3212441	C	T	3934.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr5	52338083	rs1363192	T	G	3722.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr5	52341064	rs1421937	A	G	1175.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr5	52344610	rs1421933	A	G	2703.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr5	52347369	rs1126643	C	T	6322.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr5	52351413	rs1062535	G	A	5347.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr5	52351746	rs3212522	G	A	233.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr5	52354103	rs996765	A	T	2300.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr5	52355854	rs2303127	T	C	3942.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr5	52358761	rs35940809	TA	T	118.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.610;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=2.460;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.795;QD=1.26;ReadPosRankSum=-0.725;SOR=0.375;set=HC	GT:AD:AF:DP	0/1:69,25:0.27:94
chr5	52366138	rs2112290	G	A	5429.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr5	52366162	rs2303126	G	A	3834.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr5	52367666	rs2287872	A	T	2212.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr5	52367706	rs2287871	T	C	3797.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr5	52368922	rs984966	T	A	1426.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:1,52:0.98:53
chr5	52370174	rs3212591	G	A	4995.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr5	52379277	rs2303122	C	T	5264.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr5	52781376	rs33951575	GTT	G,GT	1441.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.014;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=15.50;ReadPosRankSum=1.935;SOR=0.715;set=HC	GT:AD:AF:DP	1/2:12,60,21:0.65,0.23:93
chr5	52781902	rs3083659	CAAAA	C	709.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.44;QD=29.57;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:2,22:0.92:24
chr5	52856504	rs2279516	G	C	3999.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr5	52856716	rs1532163	A	G	408.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr5	52899166	rs11414085	C	CTTT,CTTTT	1568.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.66;QD=35.65;SOR=2.038;set=HC	GT:AD:AF:DP	1/2:0,26,18:0.59,0.41:44
chr5	52942083	rs31304	A	C	3013.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr5	52942197	rs31303	A	G	5966.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr5	52954280	rs1490769	G	A	298.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	52978776	rs3085740	GGATT	G	945.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr5	53450542	rs157072	T	C	966.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:2,38:0.95:40
chr5	53751901	rs7699	G	A	10444.77	.	AC=2;AF=1.00;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	1/1:2,390:0.99:392
chr5	53751988	rs7823	T	C	7071.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:4,272:0.99:276
chr5	53813830	rs76854460	A	C	5295.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr5	53814052	rs2548615	T	C	4695.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr5	53814394	rs2548614	T	C	4296.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr5	53815495	rs2548612	A	C	7009.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr5	53815721	rs12522213	G	C	575.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	54153803	rs10040872	C	T	6228.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr5	54154209	rs3916738	G	A	5626.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr5	54154328	rs4242050	C	T	2137.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr5	54252345	rs6877572	T	C	5970.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr5	54252463	rs6893219	C	G	1249.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr5	54253339	rs2897761	T	C	330.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr5	54253555	rs3815922	A	G	3190.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr5	54253581	rs3815923	A	G	3040.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr5	54253754	rs6883914	T	C	707.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr5	54319997	rs3822315	G	A	918.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr5	54320700	rs9292078	C	T	3585.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr5	54403957	rs3104233	T	C	3533.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr5	54404015	rs1875506	C	T	5430.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr5	54410120	rs3104230	A	C	2916.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr5	54424226	.	G	GA	189.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.586;ClippingRankSum=0.000;DP=103;ExcessHet=3.0103;FS=7.066;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.92;ReadPosRankSum=1.114;SOR=0.222;set=HC	GT:AD:AF:DP	0/1:76,23:0.23:99
chr5	54433393	rs336081	G	A	5144.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr5	54439466	rs1021580	G	A	2922.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr5	54459961	rs381852	A	G	4509.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr5	54468124	rs35770269	A	T	2255.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr5	54468577	rs70989702	CTTTTTTT	C,CT	1304.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.98;QD=40.77;SOR=1.284;set=HC	GT:AD:AF:DP	1/2:0,18,14:0.56,0.44:32
chr5	54468921	rs336115	C	T	1155.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr5	54516521	rs6879219	G	A	7214.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr5	54516752	rs3111181	C	G	1007.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr5	54517102	rs34101652	C	CT	300.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	54518660	rs7730048	G	A	852.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr5	54557438	rs400437	T	C	1103.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr5	54563775	rs143912964	TTTA	T	997.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr5	54570683	rs146499989	T	C	2066.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:1,76:0.99:77
chr5	54693374	rs230802	G	A	3485.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr5	54693402	rs230801	G	A	2751.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr5	54706325	rs139320115	T	TTTTAAA	6101.73	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr5	54709943	rs230766	G	A	1379.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr5	54718618	rs230753	G	C	773.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr5	54721619	rs3217330	A	AT	824.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:5,45:0.90:50
chr5	54721642	rs230750	A	C	2148.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr5	54737538	rs2278258	T	C	2413.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr5	54737791	rs2278257	G	C	2169.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr5	54771380	rs6870449	A	G	570.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.04;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr5	54787052	.	G	A	1110.77	.	AC=2;AF=1.00;AN=2;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr5	54804621	rs7707766	C	T	2921.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr5	54830295	rs2292280	T	G	977.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr5	54830380	rs11745331	A	G	3174.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr5	54929780	rs114244819	C	T	383.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.41;SOR=2.985;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr5	54941810	rs6450329	TG	CA	961.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	54944945	rs35843566	TA	T	248.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr5	54944976	rs11738633	G	C	679.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr5	54948586	rs138550751	C	CA	2571.73	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr5	54948598	rs11424790	C	CA	2490.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.70;SOR=1.047;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr5	54952688	rs11397177	C	CTT	279.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=25.43;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr5	54960609	rs4865614	A	G	6280.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr5	54960673	rs4865615	C	G	3558.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr5	54960687	rs4865616	C	T	3026.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr5	54964974	rs7737254	A	G	2817.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr5	54965513	rs11749883	C	T	3115.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr5	54965854	rs2408031	G	A	661.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr5	54986963	rs3846505	A	G	5491.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr5	54990005	rs7728664	C	T	1449.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr5	54990035	rs10654694	C	CA,CAA	1330.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.955;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=3.184;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=19.01;ReadPosRankSum=-0.039;SOR=1.329;set=HC	GT:AD:AF:DP	1/2:9,15,46:0.21,0.66:70
chr5	54993829	rs3761766	A	G	3369.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr5	54993929	rs3761767	A	T	691.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	55149407	rs10940487	T	C	3185.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr5	55155402	rs1009639	C	T	5280.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:2,201:0.99:203
chr5	55212446	rs16884641	T	G	2136.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr5	55213023	rs161699	C	T	837.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr5	55246001	rs4865999	A	G	1642.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.93;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr5	55398217	rs36060683	CAA	CA,C	352.74	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=28;set=Intersection	GT:AF:DP	1/1:0.92:26
chr5	55398269	rs318818	G	C	1442.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr5	55406952	rs321775	T	C	3017.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr5	55407542	rs321776	C	T	1800.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr5	55422681	rs321768	C	T	417.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr5	55472289	rs160936	T	C	977.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr5	55528572	rs142447793	A	AAC,AACAC	1081.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=34;set=Intersection	GT:AF:DP	1/2:0.27,0.67:33
chr5	55528815	rs149489	T	C	5105.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr5	55759715	rs157851	T	C	502.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	55807370	rs464605	C	T	2080.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr5	55830865	rs39837	C	T	1172.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr5	55851796	rs35483518	C	CA	380.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.196;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.64;ReadPosRankSum=1.870;SOR=0.527;set=HC	GT:AD:AF:DP	1/1:3,23:0.88:26
chr5	56111751	rs28710284	G	C	878.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr5	56152416	rs832567	C	A	756.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr5	56161787	rs832575	G	A	6901.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr5	56167987	rs17662337	A	G	895.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr5	56170758	rs149459371	G	A	990.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr5	56177443	rs702689	G	A	8380.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr5	56177743	rs832582	G	A	12520.77	.	AC=2;AF=1.00;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	1/1:0,440:1.00:440
chr5	56177848	rs5868032	TCAA	T	36442.73	.	AC=2;AF=1.00;AN=2;DB;DP=963;set=Intersection	GT:AD:AF:DP	1/1:0,816:1.00:816
chr5	56178217	rs832583	A	C	10868.77	.	AC=2;AF=1.00;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	1/1:0,404:1.00:404
chr5	56205643	rs252924	A	G	8921.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.901;ClippingRankSum=0.000;DB;DP=250;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=37.64;ReadPosRankSum=0.103;SOR=0.318;set=HC	GT:AD:AF:DP	1/1:1,236:1.00:237
chr5	56205662	rs252923	T	G	6840.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:1,147:0.99:148
chr5	56206073	rs33321	G	T	2116.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr5	56207123	rs2257505	T	A	5418.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr5	56210923	rs331499	G	A	481.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr5	56212595	rs832536	C	T	1150.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr5	56221328	rs702679	A	G	283.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	56224485	rs10684065	T	TTGGC	310.75	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr5	56224714	rs252893	T	C	1374.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:2,53:0.96:55
chr5	56224782	rs150959650	ACT	A	180.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=36.15;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr5	56224796	rs11747763	T	A	95.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=4.771;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=15.96;ReadPosRankSum=1.282;SOR=3.258;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chr5	56224818	.	T	TCTCACACACA	182	.	AC=2;AF=1.00;AN=2;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.40;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr5	56224834	rs252891	T	A	278.75	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr5	56226410	rs252890	T	C	8525.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr5	56229288	rs832529	C	T	2345.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr5	56255367	rs111894536	AT	A	80.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.266;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=2.021;QD=0.56;ReadPosRankSum=-0.197;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:112,31:0.22:143
chr5	56526565	rs1544737	G	T	992.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr5	56527224	rs1862172	T	C	1094.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr5	57751443	rs1042994	A	G	4796.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr5	57752504	rs12522386	T	C	956.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:2,30:0.94:32
chr5	57753116	rs17710502	C	T	6821.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr5	57753149	rs17767072	A	G	4963.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr5	57753251	rs2220785	T	A	2578.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:1,90:0.99:91
chr5	57753437	rs2201293	G	A	1589.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr5	57753456	rs702723	C	T	1327.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr5	57754004	rs697135	C	T	12556.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.889;ClippingRankSum=0.000;DB;DP=290;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=43.75;ReadPosRankSum=1.441;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:2,285:0.99:287
chr5	57754007	rs59135347	T	G	12623.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.863;ClippingRankSum=0.000;DB;DP=287;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=44.45;ReadPosRankSum=1.724;SOR=0.736;set=HC	GT:AD:AF:DP	1/1:2,282:0.99:284
chr5	57754040	rs17710615	G	A	8259.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chr5	57754132	rs697134	G	C	6874.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr5	57754808	rs697133	G	A	10156.77	.	AC=2;AF=1.00;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	1/1:0,370:1.00:370
chr5	57790337	rs7704785	T	C	4247.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr5	57842049	rs6870990	C	G	6506.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr5	58120753	rs11384049	G	GT	293.87	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:2,17:0.89:19
chr5	58121059	rs3749734	G	A	1145.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr5	58271713	rs112200987	T	TA	956.73	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:6,51:0.89:57
chr5	58284208	rs3805557	C	T	196.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr5	58284283	rs3805556	G	A	892.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr5	58286625	rs1553114	C	T	5502.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.08;SOR=0.866;set=HC	GT:AD:AF:DP	1/1:0,211:1.00:211
chr5	58286737	.	GA	G	245.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.062;ClippingRankSum=0.000;DP=185;ExcessHet=3.0103;FS=0.822;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.856;QD=1.71;ReadPosRankSum=0.965;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:100,44:0.31:144
chr5	58286836	rs1973451	A	G	1058.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr5	58287553	rs3840337	AAAC	A	275.70	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:3,18:0.86:21
chr5	58289046	rs7737685	G	T	1156.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr5	58289334	rs7724713	A	G	660.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr5	58295380	rs35776313	G	GTA,GTATA	665.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=22;set=Intersection	GT:AF:DP	1/1:1.00:20
chr5	58297881	rs2968014	A	G	7020.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr5	58334645	rs2279737	A	G	2598.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr5	58386812	rs10075104	G	A	285.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	58475985	rs9292194	G	C	142.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr5	58476117	rs9292195	T	C	1038.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr5	58489218	rs1445950	G	A	2277.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr5	58489384	rs27175	G	A	6018.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.50;SOR=0.916;set=HC	GT:AD:AF:DP	1/1:0,236:1.00:236
chr5	58882331	.	C	CAA	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.599;ClippingRankSum=0.000;DP=37;ExcessHet=3.0103;FS=1.603;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=0.898;QD=1.67;ReadPosRankSum=0.611;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:10,15:0.60:25
chr5	59443507	rs2961899	C	T	876.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr5	59725670	rs111271077	T	G	3087.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.090;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=6.292;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=37.66;ReadPosRankSum=1.162;SOR=1.698;set=HC	GT:AD:AF:DP	1/1:3,79:0.96:82
chr5	59725675	.	GT	G	1013.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.146;ClippingRankSum=0.000;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=0.543;QD=11.79;ReadPosRankSum=-0.181;SOR=0.821;set=HC	GT:AD:AF:DP	0/1:18,68:0.79:86
chr5	59894838	.	TA	T	242.73	.	AC=2;AF=1.00;AN=2;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr5	59901421	rs113675145	C	A	2282.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr5	59901692	rs140562698	GA	G	579.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:1,31:0.97:32
chr5	59940421	rs111289794	C	G	341.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr5	59940502	rs6877561	A	T	1162.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr5	59984897	rs57521726	A	T	6963.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr5	59995684	rs113670721	C	T	981.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr5	59996088	rs111993409	G	A	298.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr5	60063576	rs1460958	G	A	2452.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr5	60064632	rs34437042	CT	C	2646.73	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr5	60170337	rs3117	A	G	1292.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr5	60186618	rs2306350	C	T	446.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr5	60186975	rs2306351	C	A	203.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr5	60195619	rs4647120	C	A	6428.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:1,239:1.00:240
chr5	60198513	rs4647104	G	A	134.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr5	60200457	.	GTGTGTATATATATATATATATATA	G	55	.	AC=1;AF=0.500;AN=2;BRF=0.29;FR=0.5000;HP=2;HapScore=2;MGOF=4;MMLQ=21;MQ=61.19;NF=2;NR=3;PP=55;QD=13.2;SC=TAGTGTGTGTGTGTGTATATA;SbPval=0.65;Source=Platypus;TC=5;TCF=2;TCR=3;TR=5;WE=60200494;WS=60200447;set=Platypus	GT:AD:AF:DP	1/0:0,5:1.00:5
chr5	60200459	.	GTGTATATATATATATATATATATATATA	G	367.74	.	AC=2;AF=1.00;AN=2;DP=9;MQ=61.19;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr5	60200742	rs4647099	T	C	534.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr5	60214128	rs4647088	A	G	3787.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:2,140:0.99:142
chr5	60224542	rs4647064	C	T	151.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr5	60240858	rs4647038	A	C	6738.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr5	60241241	rs77149936	G	C	4879.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr5	60369083	rs10471502	A	G	1439.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr5	60394802	rs115892013	A	T	689.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:2,28:0.93:30
chr5	60448903	rs33927273	T	TAA	805.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr5	60628153	.	G	GGGC	1771.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.704;ClippingRankSum=0.000;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=39.37;ReadPosRankSum=-0.028;SOR=1.455;set=HC	GT:AD:AF:DP	1/1:2,43:0.96:45
chr5	60786880	rs7732234	C	T	174.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr5	60789972	.	CGG	C	376.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.560;ClippingRankSum=0.000;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.84;ReadPosRankSum=0.969;SOR=0.990;set=HC	GT:AD:AF:DP	0/1:5,15:0.75:20
chr5	60789973	.	GGA	ACG	316	.	AC=2;AF=1.00;AN=2;BRF=0.46;FR=0.5313;HP=1;HapScore=3;MGOF=18;MMLQ=24;MQ=60.0;NF=9;NR=1;PP=316;QD=37.9467874862;SC=ACACACACACGGAGAGAGAGA;SbPval=0.79;Source=Platypus;TC=20;TCF=17;TCR=3;TR=10;WE=60789983;WS=60789963;set=Platypus	GT:AD:AF:DP	1/1:10,10:0.50:20
chr5	60789973	rs145935854	GGA	G	37.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.849;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.89;ReadPosRankSum=0.000;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:16,4:0.20:20
chr5	60789975	.	A	ACG	376.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.518;ClippingRankSum=0.000;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.84;ReadPosRankSum=0.788;SOR=0.990;set=HC	GT:AD:AF:DP	0/1:5,15:0.75:20
chr5	60790037	rs77230862	T	C	1605.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.32;SOR=1.107;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr5	60939334	rs2455388	T	A	2808.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:1,108:0.99:109
chr5	60982107	rs36025054	CT	C	473.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.292;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=2.195;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=0.583;QD=11.28;ReadPosRankSum=-2.000;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:6,36:0.86:42
chr5	61604204	rs4700006	C	A	565.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr5	61604456	rs4441833	T	C	1062.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr5	61694379	rs247264	T	C	2977.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr5	61697859	rs27089	C	T	7033.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:2,252:0.99:254
chr5	61699465	rs45623332	G	A	11879.77	.	AC=2;AF=1.00;AN=2;DB;DP=439;set=Intersection	GT:AD:AF:DP	1/1:2,432:1.00:434
chr5	61733348	rs153857	G	A	442.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	61745737	rs11329383	CT	C	1533.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.309;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=0.666;QD=13.00;ReadPosRankSum=-0.257;SOR=0.604;set=HC	GT:AD:AF:DP	0/1:19,99:0.84:118
chr5	61781127	rs26640	C	A	251.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr5	61785936	rs26644	T	C	1445.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr5	61826663	rs32179	G	T	1199.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr5	61847103	rs61748228	A	G	1002.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:2,39:0.95:41
chr5	61874619	.	TA	T	480.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.206;ClippingRankSum=0.000;DP=217;ExcessHet=3.0103;FS=4.731;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.76;ReadPosRankSum=0.569;SOR=0.917;set=HC	GT:AD:AF:DP	0/1:106,68:0.39:174
chr5	62073118	rs1845526	G	C	8385.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr5	62597278	rs148937957	GTT	G	1097.79	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.193;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=0.430;QD=17.71;ReadPosRankSum=-0.926;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:11,51:0.82:62
chr5	63496825	rs72769844	A	G	2146.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr5	63509349	rs12519901	G	A	2271.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr5	63665293	rs56066106	TA	T	318.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.116;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=17.71;ReadPosRankSum=-0.488;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:1,17:0.94:18
chr5	63665335	rs28615727	G	A	1546.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:2,55:0.96:57
chr5	63665448	rs76090587	G	A	5741.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:1,219:1.00:220
chr5	63802636	rs36025131	C	CT	260.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.990;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=1.690;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.36;ReadPosRankSum=2.624;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:20,21:0.51:41
chr5	63803508	rs146741816	T	TA	91.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.222;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.55;ReadPosRankSum=-1.426;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:45,14:0.24:59
chr5	63890387	rs4700641	C	T	265.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr5	63905068	rs889248	A	G	4216.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr5	63989742	rs2305963	G	C	821.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr5	63991473	rs2305962	G	C	5228.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:1,189:0.99:190
chr5	64023924	rs10471638	C	A	200.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr5	64070617	rs140062546	A	AAATTATGAC	1612.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr5	64070812	rs10057598	C	T	196.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr5	64077647	rs55793256	A	G	268.28	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:2,13:0.87:15
chr5	64077966	rs2011079	A	G	351.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	64084746	rs11340181	CT	C	786.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.525;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=2.809;MLEAC=2;MLEAF=1.000;MQ=60.46;MQRankSum=0.381;QD=17.10;ReadPosRankSum=0.620;SOR=0.238;set=HC	GT:AD:AF:DP	1/1:2,44:0.96:46
chr5	64099941	rs200513803	T	TAA	332.73	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=30.25;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr5	64181525	.	G	GGTGTGTGTGTGTGT	542.73	.	AC=2;AF=1.00;AN=2;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.53;QD=41.75;SOR=5.283;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr5	64766519	rs181517355	A	T	425.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.572;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=2.248;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.73;ReadPosRankSum=-1.406;SOR=1.688;set=HC	GT:AD:AF:DP	0/1:6,25:0.81:31
chr5	64814188	rs3050538	AAGATGGC	A	1777.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr5	64825102	rs1017576	C	T	294.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr5	64847543	rs6893491	T	C	937.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr5	64847559	rs150206986	G	A	635.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	64848412	rs3213939	C	T	2122.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr5	64848442	rs3213938	T	C	1983.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.81;SOR=0.864;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr5	64857424	rs10560318	AACACAC	AAC,A	3505.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=124;set=Intersection	GT:AF:DP	1/1:0.99:88
chr5	64859884	rs35326591	CTG	C	768.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr5	64863285	rs3756301	A	C	1620.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.47;SOR=1.773;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr5	64863484	rs35529383	T	TA	606.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.777;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=2.706;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=0.983;QD=11.03;ReadPosRankSum=-1.476;SOR=0.365;set=HC	GT:AD:AF:DP	0/1:17,38:0.69:55
chr5	64864657	rs152063	A	C	393.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr5	64865405	rs149208	A	G	1270.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr5	64865658	rs3752673	T	C	3134.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr5	64880705	.	G	GAAAA	176.77	.	AC=2;AF=1.00;AN=2;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.25;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr5	64881936	rs27141	A	G	2504.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr5	64886374	rs3836739	TA	T	87.80	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr5	64887472	rs10644434	T	TTATA,TTATATA	885.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=40.26;SOR=3.912;set=HC	GT:AD:AF:DP	1/2:0,8,14:0.36,0.64:22
chr5	64890479	rs36135	A	C	2072.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:5,103:0.95:108
chr5	64906617	rs37330	T	A	1653.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr5	64909487	rs16894099	A	G	1163.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr5	64919991	rs154854	G	A	9083.77	.	AC=2;AF=1.00;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	1/1:1,340:1.00:341
chr5	64920803	rs37254	C	T	1308.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr5	64925256	rs43207	C	T	312.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr5	64933505	rs11741124	A	G	1109.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr5	64942799	rs154955	A	G	1044.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr5	64942852	.	C	CT	765.52	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.241;ClippingRankSum=0.000;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.78;ReadPosRankSum=-0.052;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:13,52:0.80:65
chr5	64946836	rs154853	G	T	1243.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr5	64957686	rs37347	A	G	659.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr5	64957718	rs37346	T	C	1354.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr5	64960311	rs36031543	A	ATCTC,ATC	4540.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=135;set=Intersection	GT:AF:DP	1/1:0.98:106
chr5	64968170	rs5868414	AT	A	628.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:3,35:0.92:38
chr5	65008946	rs3833969	GT	G	1005.73	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:6,55:0.90:61
chr5	65016452	rs9291846	A	G	1031.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr5	65073224	rs34979	C	A	4934.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr5	65075858	rs252648	A	G	514.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	65105622	rs2561196	G	A	1250.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr5	65108215	rs2254485	A	G	566.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr5	65288791	rs27132	A	G	296.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	65308055	rs706678	C	G	220.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr5	65316997	rs33911008	TA	T	71	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr5	65317181	rs706679	C	T	939.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr5	65317332	rs784276	A	T	196.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.38;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr5	65317338	rs706680	T	C	196.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.38;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr5	65364692	rs1160930	CCT	C	2247.73	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr5	66166427	rs1160971	CAT	C	3337.73	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr5	66282428	.	TTA	T	115	.	AC=1;AF=0.500;AN=2;BRF=0.36;FR=0.5000;HP=2;HapScore=1;MGOF=5;MMLQ=28;MQ=60.0;NF=0;NR=6;PP=115;QD=20.3333333333;SC=ATGTATGAATTTATATATATA;SbPval=1.0;Source=Platypus;TC=30;TCF=1;TCR=29;TR=6;WE=66282437;WS=66282418;set=Platypus	GT:AD:AF:DP	0/1:24,6:0.20:30
chr5	66406143	rs2545394	G	A	3512.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:1,124:0.99:125
chr5	66416764	rs2254790	C	A	878.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr5	66429329	rs2371882	G	T	3738.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr5	66459878	rs1705399	G	C	4154.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr5	66480004	rs1697144	T	C	10104.77	.	AC=2;AF=1.00;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	1/1:0,370:1.00:370
chr5	67493961	rs12654191	G	A	3105.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:1,118:0.99:119
chr5	67494070	rs12658274	A	T	4540.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:1,175:0.99:176
chr5	67522722	rs706713	C	T	4810.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr5	67522851	rs706714	A	C	2110.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:2,82:0.98:84
chr5	68390284	rs337259	C	T	2283.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.66;SOR=1.141;set=HC	GT:AD:AF:DP	1/1:0,89:1.00:89
chr5	68396580	rs12522805	G	A	146.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr5	68400583	rs78986159	C	A	1020.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr5	68400594	rs149336330	ATAT	A	1222.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr5	68409094	rs164393	A	C	1113.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr5	68411010	rs240809	C	T	1046.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr5	68412048	rs34215592	A	AT	1726.73	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:2,72:0.97:74
chr5	68413042	rs3840519	CT	C	1737.73	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:3,85:0.97:88
chr5	68415932	rs164391	G	A	372.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.85;SOR=3.126;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	68417643	rs164578	C	T	3548.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr5	68417755	rs164577	A	G	706.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	68419054	rs164572	A	T	4480.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr5	68463606	rs163442	G	A	420.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr5	68464234	rs163443	A	G	1570.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr5	68470559	rs426392	T	C	1228.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr5	68470599	rs3087334	C	CATTA	3650.73	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr5	68485366	rs648489	C	G	2008.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:1,78:0.99:79
chr5	68491714	rs11283275	T	TAGTCAAG	727.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	68513572	rs2242351	C	G	1725.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr5	68525027	rs2932777	C	T	753.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr5	68531253	rs2972388	C	T	2129.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr5	68546546	rs12657418	C	A	2789.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:2,111:0.98:113
chr5	68550348	rs71612521	C	CA	159.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.253;ClippingRankSum=-0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.98;ReadPosRankSum=-0.126;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:7,9:0.56:16
chr5	68551507	rs2291519	T	G	2160.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr5	68564985	rs59967147	TA	T	873.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.242;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=3.796;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=0.572;QD=12.85;ReadPosRankSum=-0.234;SOR=0.203;set=HC	GT:AD:AF:DP	0/1:12,56:0.82:68
chr5	68572668	rs4077460	C	T	242.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr5	68596068	rs28704183	C	G	530.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr5	68610009	rs28462372	A	C	526.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.34;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr5	68616331	rs10471774	C	T	7225.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:2,275:0.99:277
chr5	68667263	rs138054935	TCCC	T	547.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr5	68667276	.	C	G	581.77	.	AC=2;AF=1.00;AN=2;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.53;QD=41.55;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr5	68667542	rs114775622	G	A	103.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr5	68692375	rs34097088	T	TAA	820.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.230;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=0.561;QD=18.24;ReadPosRankSum=-0.740;SOR=0.547;set=HC	GT:AD:AF:DP	0/1:7,38:0.84:45
chr5	68696035	rs142095225	G	GTTTATTTA,GTTTA	364.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=18;set=Intersection	GT:AF:DP	1/1:1.00:11
chr5	68706252	rs10940223	G	T	678.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr5	68706438	rs6871685	G	A	1699.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr5	68720419	rs299099	T	G	2063.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr5	68728544	rs299075	G	A	3084.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr5	68862361	rs375045774	TG	T	417.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.880;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=11.356;MLEAC=1;MLEAF=0.500;MQ=47.93;MQRankSum=-6.200;QD=6.85;ReadPosRankSum=2.917;SOR=1.527;set=HC	GT:AD:AF:DP	0/1:30,31:0.51:61
chr5	68862362	rs200135651	G	T	289.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.571;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=3.570;MLEAC=1;MLEAF=0.500;MQ=47.93;MQRankSum=4.666;QD=4.39;ReadPosRankSum=-2.049;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:44,22:0.33:66
chr5	68862365	rs201465285	G	T	1262.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.778;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=3.495;MLEAC=1;MLEAF=0.500;MQ=47.93;MQRankSum=-1.834;QD=20.70;ReadPosRankSum=-0.043;SOR=0.867;set=HC	GT:AD:AF:DP	0/1:8,53:0.87:61
chr5	70200973	rs189447511	C	A	872.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=35.19;QD=24.24;SOR=1.371;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr5	70307464	rs4976210	T	C	4519.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr5	70308251	rs28409706	C	T	5159.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr5	70751818	rs3748043	T	G	4778.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr5	70751980	rs139441440	C	G	2000.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr5	70754320	rs115694662	T	C	571.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr5	70763088	rs7442961	A	G	228.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr5	70786715	rs116620471	T	G	758.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr5	70786726	rs35267960	G	GAC	1132.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr5	70800538	rs3761967	G	A	1765.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr5	70800695	rs115991484	G	A	228.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr5	70805277	rs66954493	C	T	388.75	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.182;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=17.67;ReadPosRankSum=0.229;SOR=0.582;set=HC	GT:AD:AF:DP	1/1:2,20:0.91:22
chr5	70806457	rs715748	G	A	8691.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:2,310:0.99:312
chr5	70806649	rs1961760	T	A	4027.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr5	70806711	rs715747	C	G	3502.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr5	70806958	rs6886336	G	A	4034.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:2,150:0.99:152
chr5	70809269	rs34587827	GT	G	40	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=10.00;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr5	70818130	rs34529158	C	A	1321.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr5	70818329	rs34331239	C	CA	592.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.416;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=1.300;MLEAC=1;MLEAF=0.500;MQ=61.05;MQRankSum=1.938;QD=9.56;ReadPosRankSum=0.507;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:17,45:0.73:62
chr5	70834703	rs276591	A	C	145.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr5	70834833	rs276590	G	A	1630.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr5	70834892	rs35131626	C	A	1777.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr5	70837295	rs6453014	A	C	1220.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:1,51:0.98:52
chr5	70840433	rs279290	A	G	965.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr5	70849021	rs469039	G	T	919.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr5	70860493	rs277944	T	C	229.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr5	70861757	rs116007942	T	G	128.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.78;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr5	70922616	rs12516456	G	A	1827.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr5	70927857	rs142761945	G	C	2388.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr5	70932170	rs7444232	G	T	378.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr5	70945075	rs10064079	A	G	3120.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr5	70948385	rs6888301	T	G	1777.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr5	70948654	rs2242372	G	A	887.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr5	70952506	rs7443786	A	G	1553.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr5	71016481	rs41271753	A	G	2431.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:2,94:0.98:96
chr5	71465361	rs3112399	T	A	582.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	71489082	rs34485863	G	GT	3543.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.618;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.42;MQRankSum=0.321;QD=24.61;ReadPosRankSum=1.221;SOR=0.842;set=HC	GT:AD:AF:DP	1/1:2,142:0.99:144
chr5	71489169	rs67199223	CT	C	458.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.288;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=1.708;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=-2.093;QD=9.56;ReadPosRankSum=1.771;SOR=1.201;set=HC	GT:AD:AF:DP	0/1:9,39:0.81:48
chr5	71490962	rs1866374	A	G	4601.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr5	71522125	rs9293821	A	T	981.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr5	71618276	rs3749694	C	A	102.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr5	71739546	rs4267851	C	G	2065.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr5	71743024	rs10043295	G	C	3171.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr5	72112421	rs34648	T	C	781.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.43;SOR=1.493;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr5	72112430	rs34647	C	G	957.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.31;SOR=1.358;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr5	72147269	rs34655	A	G	1730.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr5	72151858	rs34660	T	A	829.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr5	72174432	rs266435	C	G	2548.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.75;SOR=1.090;set=HC	GT:AD:AF:DP	1/1:0,99:1.00:99
chr5	72174553	rs266436	G	A	232.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr5	72182857	rs4704045	A	G	265.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	72184098	rs17606	C	T	5283.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr5	72185591	.	CT	C	150.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.641;ClippingRankSum=0.000;DP=89;ExcessHet=3.0103;FS=2.271;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.79;ReadPosRankSum=0.410;SOR=1.120;set=HC	GT:AD:AF:DP	0/1:60,24:0.29:84
chr5	72204773	.	CA	C	94.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.113;ClippingRankSum=0.000;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.32;ReadPosRankSum=-1.135;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:52,20:0.28:72
chr5	72364673	rs470926	A	G	1750.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.70;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr5	72419410	rs7731777	A	G	8992.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	1/1:0,327:1.00:327
chr5	72742882	rs2972191	T	C	1382.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr5	72743299	.	G	GGC	133	.	AC=2;AF=1.00;AN=2;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=64.19;QD=33.25;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr5	72798502	rs200370518	GTT	G,GT	1159.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.071;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.36;MQRankSum=0.350;QD=21.48;ReadPosRankSum=0.229;SOR=1.036;set=HC	GT:AD:AF:DP	1/2:2,40,12:0.74,0.22:54
chr5	72800408	rs703882	G	C	1217.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr5	72800863	rs59856963	C	CT	520.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.549;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.83;ReadPosRankSum=3.024;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:11,33:0.75:44
chr5	72850282	rs343104	A	G	1874.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr5	72851535	rs819584	A	T	309.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	72872766	rs1220622	C	T	1864.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr5	72873925	rs7443182	G	A	1353.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:2,51:0.96:53
chr5	72874801	rs12652195	G	A	3224.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr5	72980869	rs10755296	G	C	745.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr5	73153389	rs72182241	TAC	T	161.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.324;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.15;ReadPosRankSum=-1.490;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:29,10:0.26:39
chr5	73163861	rs2931422	C	T	3074.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr5	73178496	.	A	G	515.77	.	AC=2;AF=1.00;AN=2;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr5	73179783	.	C	T	4570.77	.	AC=2;AF=1.00;AN=2;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr5	73339114	rs285599	C	T	6392.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr5	73981270	rs820878	T	C	21693.77	.	AC=2;AF=1.00;AN=2;DB;DP=829;set=Intersection	GT:AD:AF:DP	1/1:0,823:1.00:823
chr5	73985107	rs41271747	T	A	1581.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr5	73992406	rs1696979	T	G	143.94	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:1,7:0.88:8
chr5	73992609	rs1665894	G	A	1845.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr5	74014627	rs137915238	G	A	2231.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr5	74028752	.	GAC	G	464.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.289;ClippingRankSum=0.000;DP=60;ExcessHet=3.0103;FS=1.541;MLEAC=1;MLEAF=0.500;MQ=60.54;MQRankSum=1.361;QD=9.29;ReadPosRankSum=-1.251;SOR=0.409;set=HC	GT:AD:AF:DP	0/1:22,28:0.56:50
chr5	74324437	rs3811986	G	A	1106.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr5	74324548	rs3811987	G	A	5511.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr5	74324902	rs4704166	C	T	5432.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:4,201:0.98:205
chr5	74364300	rs10942729	G	A	1286.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr5	74376309	rs4447963	A	C	399.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr5	74376571	rs4345300	C	T	1793.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr5	74387317	rs10462512	C	G	1245.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr5	74400386	rs961098	G	C	7674.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr5	74433839	rs5868765	G	GA	665.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.647;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.87;MQRankSum=0.492;QD=19.58;ReadPosRankSum=0.416;SOR=0.382;set=HC	GT:AD:AF:DP	1/1:1,33:0.97:34
chr5	74442410	rs1422699	G	A	2367.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr5	74442920	rs6888707	A	G	8060.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:2,293:0.99:295
chr5	74443132	rs1422698	C	T	5165.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr5	74450278	rs7704104	T	A	3046.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr5	74484275	rs10050948	C	T	1776.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr5	74491715	rs10563854	TTCA	T	9492.73	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr5	74506658	rs2219745	C	T	1034.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr5	74518317	rs57235500	T	TA	348.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	74526489	rs11295265	GT	G	5463.73	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr5	74988369	rs888789	A	G	2108.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr5	75470086	rs10805899	T	C	2330.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;MQ=59.96;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr5	75597494	rs246816	A	G	795.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr5	75648938	rs142457579	TA	T	963.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.685;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.50;MQRankSum=0.377;QD=20.50;ReadPosRankSum=-0.132;SOR=0.737;set=HC	GT:AD:AF:DP	1/1:2,45:0.96:47
chr5	75884734	rs1131232	G	A	2697.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr5	75886168	rs2270907	A	G	1441.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr5	75888788	rs3736394	G	A	1641.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr5	75904811	rs3822529	C	G	1758.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr5	75923307	rs2909888	A	G	7579.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr5	75960825	rs253092	G	C	554.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr5	75960865	rs253093	T	C	1035.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr5	75961154	rs253094	A	G	435.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr5	75967514	rs34357630	GA	G	89.86	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.517;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=5.161;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.46;ReadPosRankSum=1.015;SOR=2.262;set=HC	GT:AD:AF:DP	0/1:14,12:0.46:26
chr5	76128521	rs616235	G	A	4272.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr5	76129053	rs631465	T	C	4295.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr5	76171252	rs1320308	A	C	2686.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:1,100:0.99:101
chr5	76259350	rs7728378	T	C	594.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr5	76607627	rs11413850	C	CT	801.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:4,40:0.91:44
chr5	76607930	rs11395504	C	CT	207.27	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.107;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.42;ReadPosRankSum=2.003;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:5,17:0.77:22
chr5	76621612	rs4133658	A	T	579.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr5	76627436	rs9687030	A	G	1218.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr5	76627468	rs73767372	C	T	743.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr5	76633297	rs7717046	G	A	103.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr5	76645529	rs2306343	G	A	1251.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr5	76703374	rs3101866	A	G	2491.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr5	76704849	rs186753	T	C	4143.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr5	76708987	rs335614	A	G	3749.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr5	76709249	rs335615	A	T	298.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	76709268	rs335616	AA	GG	556.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr5	76722442	rs62362531	C	T	1313.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr5	76736884	rs12188735	A	T	609.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr5	76785406	.	GA	G	322.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.892;ClippingRankSum=0.000;DP=113;ExcessHet=3.0103;FS=0.962;MLEAC=1;MLEAF=0.500;MQ=60.38;MQRankSum=2.494;QD=3.67;ReadPosRankSum=-0.520;SOR=0.547;set=HC	GT:AD:AF:DP	0/1:51,37:0.42:88
chr5	76916335	rs5868876	G	GC	6844.73	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr5	76926578	rs13357072	T	C	3513.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.65;SOR=1.428;set=HC	GT:AD:AF:DP	1/1:0,137:1.00:137
chr5	76926651	rs62362480	A	C	2758.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr5	77071835	rs352575	G	A	152.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr5	77298619	rs11552314	A	T	704.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr5	77412011	rs42360	A	G	4428.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr5	77425028	rs6453373	A	T	2451.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr5	77745853	rs66744502	C	CA	2385.73	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr5	77755035	rs6453391	T	C	1552.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr5	77784738	rs2241566	A	G	4133.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr5	78340062	rs248384	T	C	3902.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:2,143:0.99:145
chr5	78340257	rs248385	C	G	8411.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chr5	78340286	rs532964	A	G	6474.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr5	78340411	rs531982	T	C	1534.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr5	78351636	rs2253262	A	C	4517.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:1,165:0.99:166
chr5	78373251	rs11375024	G	GA	161.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.828;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.84;ReadPosRankSum=0.881;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:40,17:0.30:57
chr5	78373431	rs682985	C	T	1501.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr5	78416416	rs567754	C	T	215.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr5	78421780	rs694290	G	A	1336.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr5	78532658	rs3733893	C	T	5604.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr5	78533584	rs72764988	G	C	970.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr5	78573993	rs375255338	TA	T	72.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.746;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.91;ReadPosRankSum=0.632;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:14,11:0.44:25
chr5	78608354	rs35852788	CT	C	98.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.263;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=1.648;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.29;ReadPosRankSum=1.390;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:12,11:0.48:23
chr5	78919205	rs145815120	T	C	14828.77	.	AC=2;AF=1.00;AN=2;DB;DP=568;set=Intersection	GT:AD:AF:DP	1/1:2,553:1.00:555
chr5	79095119	rs3749682	T	A	970.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr5	79355150	rs34023954	CA	C	435.27	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.392;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=3.728;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=0.939;QD=8.21;ReadPosRankSum=-0.796;SOR=1.652;set=HC	GT:AD:AF:DP	0/1:12,41:0.77:53
chr5	79368016	rs256437	T	C	1515.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr5	79375575	rs17885983	T	C	510.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr5	79443169	rs7712447	A	G	4366.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr5	79473059	rs11429938	C	CT	2794.73	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr5	79498623	rs7723756	A	G	6351.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr5	79499076	rs35653111	C	CAT,CATAT	356.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.521;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=61.43;MQRankSum=0.640;QD=27.44;ReadPosRankSum=-0.268;SOR=0.941;set=HC	GT:AD:AF:DP	1/2:1,7,5:0.54,0.38:13
chr5	79551867	rs1966470	A	G	2493.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr5	79596221	.	C	A	3424.77	.	AC=2;AF=1.00;AN=2;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr5	79616083	rs1862136	G	C	3237.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr5	79617357	rs16876315	T	C	2597.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:1,92:0.99:93
chr5	79731608	rs2544599	G	A	1106.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr5	79733079	rs2544600	T	C	2295.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr5	79734297	rs259028	T	C	2666.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr5	79734409	rs259029	G	A	5714.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr5	79735858	rs168939	A	G	1180.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr5	79739685	rs259033	G	A	3643.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr5	79741018	rs259034	T	A	1379.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:1,49:0.98:50
chr5	79743821	rs2251759	T	A	941.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr5	79745469	rs249038	A	G	1317.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr5	79747291	rs249039	A	G	876.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:1,34:0.97:35
chr5	79751332	rs249040	A	G	292.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr5	79773028	rs166062	T	G	5945.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:1,220:1.00:221
chr5	79815658	rs369998	T	C	14418.77	.	AC=2;AF=1.00;AN=2;DB;DP=545;set=Intersection	GT:AD:AF:DP	1/1:0,537:1.00:537
chr5	79817898	rs2431224	A	G	5649.77	.	AC=1;AF=0.500;AN=2;DB;DP=583;set=Intersection	GT:AD:AF:DP	0/1:297,278:0.48:575
chr5	79855372	rs32857	A	G	4603.77	.	AC=1;AF=0.500;AN=2;DB;DP=448;set=Intersection	GT:AD:AF:DP	0/1:222,220:0.50:442
chr5	79855876	rs187262	T	C	1737.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:121,90:0.43:211
chr5	79950781	rs1650697	A	G	4006.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr5	79974646	rs836807	T	C	457.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr5	80021168	rs32951	A	C	1755.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr5	80021193	rs245016	C	T	2384.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr5	80021445	rs32952	A	C	618.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr5	80149981	rs184967	A	G	3085.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr5	80160596	rs3991216	AAATG	A	3866.73	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.45;SOR=1.749;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr5	80168937	rs26279	G	A	7162.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr5	80382806	rs7733625	G	T	1609.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr5	80388554	rs2592094	C	T	1292.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr5	80390225	rs505748	C	T	711.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr5	80390290	rs498119	C	T	207.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr5	80409229	rs26422	C	G	1065.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr5	80409729	rs10942942	T	C	3643.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr5	81006377	rs13156146	G	T	266.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr5	81474225	rs9293290	A	T	665.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	81538528	rs12654645	C	T	1264.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr5	81549216	rs1864183	C	T	10761.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr5	81549240	rs1864182	C	A	9723.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr5	81549280	rs1864181	C	T	3523.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr5	81572184	rs226200	G	C	3488.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr5	81572464	rs226199	G	C	549.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr5	81573992	rs226198	C	T	3607.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr5	81601142	.	C	CA	78.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.225;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;FS=1.494;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=1.759;QD=1.71;ReadPosRankSum=0.192;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:35,11:0.24:46
chr5	82135819	rs139917914	T	TA	646.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.576;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.33;MQRankSum=0.387;QD=20.21;ReadPosRankSum=1.057;SOR=0.546;set=HC	GT:AD:AF:DP	1/1:2,30:0.94:32
chr5	82135829	.	T	TC	329.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.760;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=3.144;MLEAC=1;MLEAF=0.500;MQ=60.49;MQRankSum=1.103;QD=7.85;ReadPosRankSum=0.026;SOR=0.294;set=HC	GT:AD:AF:DP	0/1:15,27:0.64:42
chr5	82135830	.	C	CCA	133.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.577;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=3.084;MLEAC=1;MLEAF=0.500;MQ=60.49;MQRankSum=-1.013;QD=3.11;ReadPosRankSum=-0.025;SOR=1.292;set=HC	GT:AD:AF:DP	0/1:28,15:0.35:43
chr5	82136064	rs113309601	T	TTCTTC	2139.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr5	82407098	rs1478482	G	A	736.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.93;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr5	82407105	rs1478481	A	G	680.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.38;SOR=5.549;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	82499307	rs2662238	G	A	266.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	82833145	rs2548541	G	A	7859.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr5	82833369	rs309559	A	G	8827.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr5	82834299	rs188703	G	A	5131.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr5	82834630	rs309557	T	C	7906.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:1,296:1.00:297
chr5	82835545	rs160279	A	G	6945.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr5	82835724	rs160278	T	A	4485.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr5	82837631	rs160277	G	T	9071.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	1/1:0,333:1.00:333
chr5	82843711	rs3842065	T	TATC	907.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr5	82849120	rs6873404	T	A	1921.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr5	82850631	rs2290673	A	G	755.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	82868173	rs309585	G	A	4567.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:3,171:0.98:174
chr5	82875800	rs308365	C	T	4781.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr5	83259225	rs11746605	G	T	1000.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:27,40:0.60:67
chr5	83433000	.	C	CAT	2969	.	AC=1;AF=0.500;AN=2;BRF=0.43;FR=0.5000;HP=2;HapScore=4;MGOF=9;MMLQ=22;MQ=59.77;NF=52;NR=25;PP=2969;QD=20;SC=TGTGTGTATACATACACACAC;SbPval=0.3;Source=Platypus;TC=160;TCF=115;TCR=45;TR=77;WE=83433014;WS=83432990;set=Platypus	GT:AD:AF:DP	0/1:83,77:0.48:160
chr5	83433002	.	T	TAC	1492.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.499;ClippingRankSum=0.000;DP=255;ExcessHet=3.0103;FS=1.327;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.85;ReadPosRankSum=-0.298;SOR=0.546;set=HC	GT:AD:AF:DP	0/1:135,83:0.38:218
chr5	83433004	rs350490	C	T	981.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.318;ClippingRankSum=0.000;DB;DP=244;ExcessHet=3.0103;FS=0.596;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.34;ReadPosRankSum=2.274;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:164,62:0.27:226
chr5	85582712	rs2964837	T	C	5979.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.07;QD=26.00;SOR=1.054;set=HC	GT:AD:AF:DP	1/1:0,230:1.00:230
chr5	85586584	rs10038100	C	T	929.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.04;QD=30.99;SOR=2.019;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr5	85586831	rs12654078	C	T	3645.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr5	86564995	rs3734000	T	A	2763.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr5	86633973	rs3752862	G	A	448.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	86667856	rs35014912	G	GA	946.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.080;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=1.756;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=17.21;ReadPosRankSum=-1.144;SOR=1.410;set=HC	GT:AD:AF:DP	1/1:7,48:0.87:55
chr5	86690491	rs111981358	A	G	244.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr5	86697387	rs3093816	A	G	30.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=15.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr5	87497977	rs358289	C	T	893.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr5	87502292	rs62369771	G	A	965.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.10;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr5	87502325	rs357515	G	A	802.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.94;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr5	87963272	rs5869431	G	GA	4990.73	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr5	87968912	.	CA	C	704.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.840;ClippingRankSum=0.000;DP=484;ExcessHet=3.0103;FS=1.026;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=2.649;QD=1.70;ReadPosRankSum=-2.005;SOR=0.774;set=HC	GT:AD:AF:DP	0/1:286,128:0.31:414
chr5	88018388	.	G	GA	470.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.835;ClippingRankSum=0.000;DP=261;ExcessHet=3.0103;FS=1.284;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=2.392;QD=1.91;ReadPosRankSum=0.128;SOR=0.577;set=HC	GT:AD:AF:DP	0/1:187,59:0.24:246
chr5	88025845	rs34297769	CA	C	765.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:3,43:0.93:46
chr5	88416255	rs139453030	A	AAC	459.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.312;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=1.144;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=1.855;QD=7.93;ReadPosRankSum=-0.507;SOR=1.042;set=HC	GT:AD:AF:DP	0/1:39,19:0.33:58
chr5	88416354	rs9293511	C	T	799.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:38,41:0.52:79
chr5	89703641	rs4873	C	G	2072.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr5	89705752	rs11315430	GC	G	846.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr5	89769728	rs2162986	T	C	8631.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr5	89781594	rs2115500	C	T	1530.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr5	89802536	.	C	T	1448.77	.	AC=1;AF=0.500;AN=2;DP=120;set=Intersection	GT:AD:AF:DP	0/1:53,65:0.55:118
chr5	89807711	rs6897910	G	A	964.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:32,45:0.58:77
chr5	89814604	rs1305059	G	GTGACC	1296.73	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:50,35:0.41:85
chr5	89815312	rs34548009	G	GA	1072.73	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:70,65:0.48:135
chr5	89816299	rs171790	C	A	6693.77	.	AC=1;AF=0.500;AN=2;DB;DP=647;set=Intersection	GT:AD:AF:DP	0/1:323,318:0.50:641
chr5	89816309	rs35118083	A	AT	6059.73	.	AC=1;AF=0.500;AN=2;DB;DP=603;set=Intersection	GT:AD:AF:DP	0/1:286,279:0.49:565
chr5	89816383	rs13182165	G	A	2102.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:127,102:0.45:229
chr5	89820984	rs10069050	T	C	3740.77	.	AC=1;AF=0.500;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	0/1:188,176:0.48:364
chr5	89825210	rs603870	G	A	6723.77	.	AC=1;AF=0.500;AN=2;DB;DP=567;set=Intersection	GT:AD:AF:DP	0/1:245,310:0.56:555
chr5	89909972	rs11286344	GA	G	193.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.089;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=0.870;QD=6.68;ReadPosRankSum=-1.532;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:10,19:0.66:29
chr5	89914925	rs41311333	T	G	1323.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:78,70:0.47:148
chr5	89918620	.	CGATCTCAG	C	962.73	.	AC=1;AF=0.500;AN=2;DP=47;set=Intersection	GT:AD:AF:DP	0/1:17,25:0.60:42
chr5	89924976	rs2366771	C	A	500.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:26,22:0.46:48
chr5	89938587	rs2366773	C	T	2002.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:130,97:0.43:227
chr5	89943571	rs2366777	G	T	1632.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:84,77:0.48:161
chr5	89954184	rs11958484	T	C	257.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:7,13:0.65:20
chr5	89968626	rs1028191	A	T	1718.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:63,81:0.56:144
chr5	89979380	rs4916683	T	C	1930.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.336;ClippingRankSum=0.000;DB;DP=225;ExcessHet=3.0103;FS=0.514;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.94;ReadPosRankSum=1.762;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:119,97:0.45:216
chr5	89979589	rs4916684	G	A	3214.77	.	AC=1;AF=0.500;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:160,149:0.48:309
chr5	89979698	rs4916685	C	T	3763.77	.	AC=1;AF=0.500;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	0/1:176,166:0.49:342
chr5	89985882	rs10037067	A	G	1288.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:79,63:0.44:142
chr5	89988412	rs10040165	G	A	1297.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:73,62:0.46:135
chr5	89988504	rs2366926	A	G	3922.77	.	AC=1;AF=0.500;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	0/1:222,187:0.46:409
chr5	89989779	rs16876822	G	A	1533.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:78,73:0.48:151
chr5	89990324	rs1878878	A	G	6749.77	.	AC=1;AF=0.500;AN=2;DB;DP=742;set=Intersection	GT:AD:AF:DP	0/1:408,325:0.44:733
chr5	89990545	rs10068473	C	A	2364.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:127,112:0.47:239
chr5	89993045	rs10942604	T	C	1440.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:48,59:0.55:107
chr5	90001988	rs1160121	G	T	1636.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:97,76:0.44:173
chr5	90002220	rs60522638	C	CT	1053.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.314;ClippingRankSum=0.000;DB;DP=259;ExcessHet=3.0103;FS=1.401;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=2.169;QD=5.27;ReadPosRankSum=0.173;SOR=0.881;set=HC	GT:AD:AF:DP	0/1:115,85:0.42:200
chr5	90004776	rs41308850	A	C	2400.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:177,116:0.40:293
chr5	90007196	rs7732169	C	T	906.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:36,39:0.52:75
chr5	90012614	rs10067181	A	T	304.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:14,13:0.48:27
chr5	90015792	rs6881412	C	T	1342.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:72,58:0.45:130
chr5	90016129	rs6452906	A	G	449.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:17,19:0.53:36
chr5	90020868	rs7723259	A	C	903.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:47,40:0.46:87
chr5	90020923	rs16869042	T	G	923.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:57,46:0.45:103
chr5	90021499	rs4916815	G	T	115.73	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:13,10:0.43:23
chr5	90024735	rs2366928	G	A	578.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:39,28:0.42:67
chr5	90052263	rs34894132	T	TC	4214.73	.	AC=1;AF=0.500;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	0/1:170,166:0.49:336
chr5	90052289	rs10062026	G	A	3604.77	.	AC=1;AF=0.500;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	0/1:180,181:0.50:361
chr5	90052372	rs2438349	C	T	2599.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:151,129:0.46:280
chr5	90053056	rs2443065	A	G	274.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:21,15:0.42:36
chr5	90059001	rs881289	T	A	229.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:21,11:0.34:32
chr5	90059406	rs2049009	A	G	115.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:21,7:0.25:28
chr5	90073792	.	GA	G	2816.73	.	AC=1;AF=0.500;AN=2;DP=314;set=Intersection	GT:AD:AF:DP	0/1:165,140:0.46:305
chr5	90079630	.	A	G	337.77	.	AC=1;AF=0.500;AN=2;DP=33;set=Intersection	GT:AD:AF:DP	0/1:16,16:0.50:32
chr5	90079820	rs17554631	A	G	1684.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:95,85:0.47:180
chr5	90107108	rs2438374	A	G	7489.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:2,278:0.99:280
chr5	90119324	rs2438378	G	A	4958.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr5	90151589	rs2247870	G	A	4211.77	.	AC=1;AF=0.500;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	0/1:204,206:0.50:410
chr5	90445829	rs35858094	T	TTC	105.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.275;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=5.797;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.49;ReadPosRankSum=1.078;SOR=1.514;set=HC	GT:AD:AF:DP	0/1:52,19:0.27:71
chr5	90445830	.	T	TC	224.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.300;ClippingRankSum=0.000;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.51;ReadPosRankSum=1.136;SOR=0.796;set=HC	GT:AD:AF:DP	0/1:39,25:0.39:64
chr5	90449031	rs7726023	T	C	6499.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:3,265:0.99:268
chr5	90669400	rs6452952	A	T	704.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr5	90672711	rs62376564	T	G	1052.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.093;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=28.45;ReadPosRankSum=-0.659;SOR=2.476;set=HC	GT:AD:AF:DP	1/1:1,36:0.97:37
chr5	93294451	.	C	CA	221.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.118;ClippingRankSum=0.000;DP=217;ExcessHet=3.0103;FS=2.715;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=4.126;QD=1.05;ReadPosRankSum=-0.987;SOR=0.964;set=HC	GT:AD:AF:DP	0/1:169,43:0.20:212
chr5	93386302	.	C	CA	108.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.364;ClippingRankSum=0.000;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.39;ReadPosRankSum=0.064;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:59,19:0.24:78
chr5	93388777	rs148770534	T	TATAG	944.73	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:21,24:0.53:45
chr5	93410244	rs7732578	C	T	2779.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr5	93720017	rs394317	C	T	8266.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.150;ClippingRankSum=0.000;DB;DP=693;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.02;ReadPosRankSum=-0.626;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:298,390:0.57:688
chr5	93731985	rs308207	A	G	20778.77	.	AC=2;AF=1.00;AN=2;DB;DP=777;set=Intersection	GT:AD:AF:DP	1/1:0,764:1.00:764
chr5	93732334	rs308206	C	T	158.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:16,9:0.36:25
chr5	93752874	rs29911	C	T	1508.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:99,75:0.43:174
chr5	93788579	rs3797203	C	T	278.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:7,11:0.61:18
chr5	93964694	rs11741678	A	G	522.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:22,21:0.49:43
chr5	93990099	rs11427225	G	GA	187.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.741;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=1.210;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.58;ReadPosRankSum=1.967;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:25,16:0.39:41
chr5	93999431	rs74718913	A	C	918.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:37,39:0.51:76
chr5	94006023	rs7709494	T	C	321.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:15,16:0.52:31
chr5	94014800	rs1549179	T	A	210.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:9,9:0.50:18
chr5	94043353	rs7735924	G	T	2476.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:103,116:0.53:219
chr5	94044422	rs2290300	T	C	1212.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:71,60:0.46:131
chr5	94046387	rs306573	A	G	1683.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr5	94050403	rs13456	T	C	2487.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:112,114:0.50:226
chr5	94050447	rs2638	C	T	3793.77	.	AC=1;AF=0.500;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	0/1:211,194:0.48:405
chr5	94050487	rs2636	T	A	4991.77	.	AC=1;AF=0.500;AN=2;DB;DP=500;set=Intersection	GT:AD:AF:DP	0/1:248,246:0.50:494
chr5	94114594	rs255372	T	C	2191.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr5	94230358	rs9885412	C	T	1117.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:74,54:0.42:128
chr5	94288790	rs6892227	C	A	792.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr5	94404660	rs11357469	CT	C	104.73	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.34;QD=13.09;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr5	94619545	rs5869672	G	GC	2996.73	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr5	94654187	rs255983	C	T	4101.77	.	AC=1;AF=0.500;AN=2;DB;DP=439;set=Intersection	GT:AD:AF:DP	0/1:230,207:0.47:437
chr5	94728631	rs2546097	G	T	3248.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:171,152:0.47:323
chr5	94741668	rs6898354	T	C	268.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:5,11:0.69:16
chr5	94741741	rs253714	C	A	953.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:34,43:0.56:77
chr5	94741837	rs253715	A	G	5929.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr5	94741973	rs253716	T	G	3635.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr5	94749723	rs7726891	G	A	3522.77	.	AC=1;AF=0.500;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	0/1:223,170:0.43:393
chr5	94749903	rs11418250	C	CT	3356.73	.	AC=1;AF=0.500;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	0/1:165,165:0.50:330
chr5	94749969	rs6556866	C	G	1485.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:56,61:0.52:117
chr5	94772540	rs6878669	C	T	14434.77	.	AC=2;AF=1.00;AN=2;DB;DP=553;set=Intersection	GT:AD:AF:DP	1/1:0,544:1.00:544
chr5	94784397	.	AT	A	144.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.186;ClippingRankSum=0.000;DP=86;ExcessHet=3.0103;FS=2.638;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.491;QD=1.90;ReadPosRankSum=1.335;SOR=0.346;set=HC	GT:AD:AF:DP	0/1:47,29:0.38:76
chr5	94834331	.	C	CT	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.688;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=7.812;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.39;ReadPosRankSum=4.054;SOR=0.044;set=HC	GT:AD:AF:DP	0/1:22,8:0.27:30
chr5	94842718	.	T	TA	48.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.069;ClippingRankSum=0.000;DP=112;ExcessHet=3.0103;FS=6.250;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.54;ReadPosRankSum=-0.706;SOR=0.219;set=HC	GT:AD:AF:DP	0/1:75,16:0.18:91
chr5	94903575	.	C	CT	64.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.084;ClippingRankSum=0.000;DP=139;ExcessHet=3.0103;FS=9.153;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.48;ReadPosRankSum=0.280;SOR=0.378;set=HC	GT:AD:AF:DP	0/1:109,26:0.19:135
chr5	94988734	rs114220274	A	T	1822.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:71,78:0.52:149
chr5	95084131	rs34896	G	A	4126.77	.	AC=1;AF=0.500;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	0/1:241,204:0.46:445
chr5	95091194	rs34898	C	T	14256.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.640;ClippingRankSum=0.000;DB;DP=832;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.49;ReadPosRankSum=-0.343;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:443,372:0.46:815
chr5	95091201	rs34899	A	G	14532.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.577;ClippingRankSum=0.000;DB;DP=874;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.96;ReadPosRankSum=-0.250;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:463,394:0.46:857
chr5	95119408	rs888808	T	C	2204.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:100,97:0.49:197
chr5	95124328	rs3822753	T	G	1811.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:72,78:0.52:150
chr5	95194445	rs57525142	G	A	1975.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:66,92:0.58:158
chr5	95194571	rs13168014	T	C	3962.77	.	AC=1;AF=0.500;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	0/1:203,193:0.49:396
chr5	95224700	.	G	GA	265.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.047;ClippingRankSum=0.000;DP=80;ExcessHet=3.0103;FS=0.970;MLEAC=1;MLEAF=0.500;MQ=60.40;MQRankSum=1.919;QD=3.59;ReadPosRankSum=1.146;SOR=0.960;set=HC	GT:AD:AF:DP	0/1:44,30:0.41:74
chr5	95414786	rs5869706	T	TTAAAA	1020.73	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:37,26:0.41:63
chr5	95728898	rs6235	C	G	8387.77	.	AC=1;AF=0.500;AN=2;DB;DP=814;MQ=60.01;set=Intersection	GT:AD:AF:DP	0/1:397,406:0.51:803
chr5	95728974	rs6234	G	C	5488.77	.	AC=1;AF=0.500;AN=2;DB;DP=540;MQ=60.02;set=Intersection	GT:AD:AF:DP	0/1:260,272:0.51:532
chr5	95747963	rs35364611	TCTC	T	2924.73	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:132,80:0.38:212
chr5	95761432	rs11310306	TA	T	1515.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.115;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=0.924;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.535;QD=10.83;ReadPosRankSum=-1.907;SOR=0.541;set=HC	GT:AD:AF:DP	0/1:25,115:0.82:140
chr5	95768847	rs6230	A	G	561.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:23,22:0.49:45
chr5	95865500	rs13186522	T	C	344.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:13,16:0.55:29
chr5	95865526	rs13161802	G	A	377.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:15,19:0.56:34
chr5	95998357	rs146973537	G	GGCAGGTGGCT	499.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	96031569	rs9667	A	G	1525.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:96,73:0.43:169
chr5	96064633	rs27531	A	C	118.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr5	96064715	rs28042	A	T	407.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.636;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.86;ReadPosRankSum=-0.789;SOR=0.538;set=HC	GT:AD:AF:DP	0/1:23,23:0.50:46
chr5	96066652	rs151904	C	T	2807.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:190,137:0.42:327
chr5	96078309	rs26503	G	A	3246.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:159,155:0.49:314
chr5	96079387	rs26505	C	T	3281.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:133,162:0.55:295
chr5	96079402	rs26506	C	T	3741.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:152,182:0.54:334
chr5	96089658	rs27583	G	A	952.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:52,44:0.46:96
chr5	96089976	rs27772	A	G	567.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:26,26:0.50:52
chr5	96093222	rs27654	G	A	5485.77	.	AC=1;AF=0.500;AN=2;DB;DP=630;set=Intersection	GT:AD:AF:DP	0/1:332,284:0.46:616
chr5	96093391	.	G	GT	355.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.316;ClippingRankSum=0.000;DP=200;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.80;ReadPosRankSum=1.045;SOR=0.584;set=HC	GT:AD:AF:DP	0/1:80,47:0.37:127
chr5	96093441	rs27969	C	T	667.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:38,31:0.45:69
chr5	96097895	rs27980	T	G	404.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:33,22:0.40:55
chr5	96098214	rs27582	G	A	1527.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:71,67:0.49:138
chr5	96101031	.	TAAAAA	T,TAAA	1435.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.864;ClippingRankSum=0.000;DP=240;ExcessHet=3.0103;FS=7.394;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=13.54;ReadPosRankSum=0.330;SOR=1.379;set=HC	GT:AD:AF:DP	1/2:25,38,43:0.36,0.41:106
chr5	96101066	rs11399505	T	TA	2107.73	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:28,59:0.68:87
chr5	96101944	rs27524	A	G	2401.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:111,107:0.49:218
chr5	96107202	rs27689	G	T	1007.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:59,46:0.44:105
chr5	96116031	rs71978924	AACTC	A	788.73	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:31,22:0.42:53
chr5	96116112	rs35237285	AT	A	45.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.885;ClippingRankSum=0.000;DB;DP=200;ExcessHet=3.0103;FS=3.738;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.23;ReadPosRankSum=-0.512;SOR=0.420;set=HC	GT:AD:AF:DP	0/1:161,36:0.18:197
chr5	96116940	rs27042	G	A	1087.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:73,49:0.40:122
chr5	96117300	rs27043	G	A	1514.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:81,67:0.45:148
chr5	96118852	rs27044	G	C	3349.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:152,149:0.50:301
chr5	96119579	rs70981840	A	ACT	689.73	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:10,16:0.62:26
chr5	96121370	rs11386832	T	TA	1100.73	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:59,48:0.45:107
chr5	96121406	rs469876	A	G	2349.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:105,112:0.52:217
chr5	96121524	rs469783	C	T	8209.77	.	AC=1;AF=0.500;AN=2;DB;DP=777;set=Intersection	GT:AD:AF:DP	0/1:372,391:0.51:763
chr5	96121715	rs469758	C	T	1838.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:109,83:0.43:192
chr5	96122260	rs30379	T	G	966.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.066;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.95;ReadPosRankSum=1.873;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:58,50:0.46:108
chr5	96122281	rs30380	A	C	1112.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:50,54:0.52:104
chr5	96124330	rs30187	T	C	3965.77	.	AC=1;AF=0.500;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	0/1:178,185:0.51:363
chr5	96124447	rs30186	G	C	4576.77	.	AC=1;AF=0.500;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	0/1:198,208:0.51:406
chr5	96125910	rs26510	C	T	2880.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:98,128:0.57:226
chr5	96126197	rs27710	A	G	4765.77	.	AC=1;AF=0.500;AN=2;DB;DP=497;set=Intersection	GT:AD:AF:DP	0/1:259,229:0.47:488
chr5	96126308	rs27529	A	G	2253.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:146,110:0.43:256
chr5	96127905	rs27640	T	C	3975.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:145,174:0.55:319
chr5	96129512	rs27434	A	G	2369.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:114,111:0.49:225
chr5	96130836	rs26618	T	C	5903.77	.	AC=1;AF=0.500;AN=2;DB;DP=524;set=Intersection	GT:AD:AF:DP	0/1:252,270:0.52:522
chr5	96139250	rs26653	C	G	3636.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:125,150:0.55:275
chr5	96215680	rs41506651	C	T	6726.77	.	AC=1;AF=0.500;AN=2;DB;DP=671;set=Intersection	GT:AD:AF:DP	0/1:342,319:0.48:661
chr5	96222627	rs13189819	G	A	435.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:28,20:0.42:48
chr5	96230858	rs3832368	T	TA	109.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.273;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=2.741;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.78;ReadPosRankSum=-2.143;SOR=2.041;set=HC	GT:AD:AF:DP	0/1:19,10:0.34:29
chr5	96230883	rs371137761	A	ATT	568.73	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:32,22:0.41:54
chr5	96231000	rs2549782	G	T	2397.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:193,131:0.40:324
chr5	96232142	rs2548538	T	A	2931.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:153,143:0.48:296
chr5	96232222	rs2548537	G	C	2374.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:158,126:0.44:284
chr5	96232250	rs34701361	G	GAAA	2687.73	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:127,74:0.37:201
chr5	96232286	rs2549785	C	T	986.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:77,48:0.38:125
chr5	96232345	rs56321917	CAT	C	639.73	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:34,19:0.36:53
chr5	96232402	rs2548536	T	A	556.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:14,26:0.65:40
chr5	96235896	rs2248374	A	G	2934.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:108,136:0.56:244
chr5	96237114	rs187265	C	G	1228.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.343;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.790;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.38;ReadPosRankSum=0.548;SOR=0.592;set=HC	GT:AD:AF:DP	0/1:51,57:0.53:108
chr5	96237326	rs2287988	G	A	1536.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:104,80:0.43:184
chr5	96237413	rs171647	C	T	484.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:32,21:0.40:53
chr5	96239294	rs1423568	A	G	1817.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:66,80:0.55:146
chr5	96244549	rs2549794	C	T	1267.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:40,51:0.56:91
chr5	96244585	rs2548527	A	C	2514.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:69,99:0.59:168
chr5	96244624	rs148708696	T	C	3224.77	.	AC=1;AF=0.500;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	0/1:212,158:0.43:370
chr5	96244638	rs2549795	A	G	5839.77	.	AC=1;AF=0.500;AN=2;DB;DP=465;set=Intersection	GT:AD:AF:DP	0/1:191,264:0.58:455
chr5	96245343	rs2549796	C	T	3792.77	.	AC=1;AF=0.500;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	0/1:224,189:0.46:413
chr5	96245439	rs1056893	C	T	2811.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:128,125:0.49:253
chr5	96245518	rs2549797	A	G	620.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:38,28:0.42:66
chr5	96249115	rs2255546	C	T	5319.77	.	AC=1;AF=0.500;AN=2;DB;DP=522;set=Intersection	GT:AD:AF:DP	0/1:253,262:0.51:515
chr5	96253104	rs1363908	T	C	774.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:38,38:0.50:76
chr5	96322419	rs38034	C	T	3321.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:168,159:0.49:327
chr5	96329857	rs27304	G	T	929.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr5	96332085	rs3836862	TC	T	6211.73	.	AC=1;AF=0.500;AN=2;DB;DP=582;MQ=60.04;set=Intersection	GT:AD:AF:DP	0/1:316,252:0.44:568
chr5	96339102	rs3214461	AC	A	373.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.278;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=1.087;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.67;ReadPosRankSum=-0.450;SOR=0.478;set=HC	GT:AD:AF:DP	0/1:33,23:0.41:56
chr5	96339273	rs27613	T	G	1279.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:54,62:0.53:116
chr5	96341750	rs3839297	T	TTA	446.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:9,19:0.68:28
chr5	96342077	rs3835054	TA	T	351.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.187;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.82;ReadPosRankSum=-0.533;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:16,29:0.64:45
chr5	96363407	rs27300	C	T	3286.77	.	AC=1;AF=0.500;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	0/1:184,159:0.46:343
chr5	96364063	rs27712	C	T	2633.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:158,125:0.44:283
chr5	96507204	rs2432090	T	C	643.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr5	96512865	rs2548319	T	A	7706.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.29;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,174:1.00:174
chr5	96512871	rs2544772	T	A	7764.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.63;SOR=0.947;set=HC	GT:AD:AF:DP	1/1:0,174:1.00:174
chr5	96513627	rs112606258	A	T	1783.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:65,76:0.54:141
chr5	98109838	rs2662263	A	C	3812.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr5	98109985	rs2545730	G	A	665.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr5	98192164	rs138635992	AAGG	A	6605.73	.	AC=1;AF=0.500;AN=2;DB;DP=362;MQ=60.03;set=Intersection	GT:AD:AF:DP	0/1:186,172:0.48:358
chr5	98192465	rs692832	T	C	614.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:37,32:0.46:69
chr5	98194589	rs2545735	T	C	489.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:17,20:0.54:37
chr5	98194618	rs2545734	T	A	709.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.082;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=4.111;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.09;ReadPosRankSum=0.100;SOR=1.436;set=HC	GT:AD:AF:DP	0/1:26,38:0.59:64
chr5	98194781	rs330421	C	G	1195.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:67,57:0.46:124
chr5	98194888	rs330422	C	T	201.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:11,9:0.45:20
chr5	98195818	rs325203	A	G	2282.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:103,108:0.51:211
chr5	98199204	rs161941	C	T	419.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:36,23:0.39:59
chr5	98205326	rs144514283	GCACACACACA	G	117.73	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:24,6:0.20:30
chr5	98210868	rs162140	T	A	366.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:23,19:0.45:42
chr5	98216956	.	CTTTTT	C	262.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.295;ClippingRankSum=-0.000;DP=21;ExcessHet=3.0103;FS=5.219;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=18.77;ReadPosRankSum=2.662;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:6,8:0.57:14
chr5	98218734	rs367578795	CA	C	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.108;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.54;ReadPosRankSum=0.190;SOR=0.536;set=HC	GT:AD:AF:DP	0/1:56,16:0.22:72
chr5	98221383	.	A	AT	1285.73	.	AC=1;AF=0.500;AN=2;DP=70;set=Intersection	GT:AD:AF:DP	0/1:29,38:0.57:67
chr5	98232809	rs326468	T	C	997.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:34,39:0.53:73
chr5	98261891	rs161744	T	C	427.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:22,20:0.48:42
chr5	99921841	rs2370612	G	C	1640.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr5	99922081	rs13876	G	A	200.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr5	101575091	rs62370437	C	T	3823.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr5	101575170	rs145197480	C	T	300.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:23,15:0.39:38
chr5	101585209	rs10067502	G	A	1697.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:45,69:0.61:114
chr5	101592809	rs261101	T	A	2086.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:88,91:0.51:179
chr5	101593486	rs398228	C	A	46.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.455;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.34;ReadPosRankSum=-0.712;SOR=1.038;set=HC	GT:AD:AF:DP	0/1:17,3:0.15:20
chr5	101593487	rs416734	T	G	46.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.909;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.34;ReadPosRankSum=-0.778;SOR=1.038;set=HC	GT:AD:AF:DP	0/1:17,3:0.15:20
chr5	101595885	rs148885155	T	TGA	2439.73	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:84,78:0.48:162
chr5	101596032	rs202209380	AAAAT	A	100.73	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:5,4:0.44:9
chr5	101606518	rs33922930	G	GA	963.73	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:54,56:0.51:110
chr5	101627411	rs2600824	C	T	478.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:19,21:0.53:40
chr5	101631592	rs3114659	A	G	2990.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:124,142:0.53:266
chr5	101631761	rs76381196	T	C	5511.77	.	AC=1;AF=0.500;AN=2;DB;DP=543;set=Intersection	GT:AD:AF:DP	0/1:277,261:0.49:538
chr5	101631790	rs10479190	T	G	4646.77	.	AC=1;AF=0.500;AN=2;DB;DP=468;set=Intersection	GT:AD:AF:DP	0/1:239,226:0.49:465
chr5	101724448	rs10055840	G	C	1335.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:63,64:0.50:127
chr5	101726648	rs6874612	C	A	2486.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr5	101726770	rs10073892	T	C	1643.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:79,81:0.51:160
chr5	101726851	rs1452065	A	G	1764.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr5	101795490	rs11746217	A	G	5268.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.81;SOR=0.974;set=HC	GT:AD:AF:DP	1/1:0,231:1.00:231
chr5	101795556	rs11749193	G	A	685.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:24,27:0.53:51
chr5	101811346	rs4703232	T	C	1982.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr5	101816104	rs6884141	G	A	2644.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:155,131:0.46:286
chr5	101816228	rs10041652	G	A	1202.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:29,51:0.64:80
chr5	102249546	rs6876278	A	G	1274.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:84,66:0.44:150
chr5	102249587	rs112746759	G	T	3126.77	.	AC=1;AF=0.500;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	0/1:179,150:0.46:329
chr5	102282472	rs3776873	T	A	202.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:9,9:0.50:18
chr5	102295504	rs2195272	G	T	1399.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:45,57:0.56:102
chr5	102310166	rs3733939	G	A	2542.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:119,119:0.50:238
chr5	102340782	rs3834262	GATTA	G	743.73	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:18,20:0.53:38
chr5	102345546	rs2230457	A	C	4335.77	.	AC=1;AF=0.500;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	0/1:183,215:0.54:398
chr5	102355716	rs3215069	CT	C	415.73	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:27,28:0.51:55
chr5	102360747	rs17296280	A	C	941.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.101;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=1.255;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.45;ReadPosRankSum=0.661;SOR=0.424;set=HC	GT:AD:AF:DP	0/1:29,41:0.59:70
chr5	102363858	rs26433	C	T	980.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:30,40:0.57:70
chr5	102364542	rs2067133	A	AAT	3083.73	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:79,80:0.50:159
chr5	102423576	rs468844	A	G	769.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.746;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=1.725;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.64;ReadPosRankSum=-0.040;SOR=0.321;set=HC	GT:AD:AF:DP	0/1:14,20:0.59:34
chr5	102423579	rs469094	A	C	769.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.389;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=1.725;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.64;ReadPosRankSum=0.020;SOR=0.321;set=HC	GT:AD:AF:DP	0/1:14,20:0.59:34
chr5	102432915	.	ATG	A	44	.	AC=1;AF=0.500;AN=2;BRF=0.13;FR=0.5000;HP=2;HapScore=2;MGOF=13;MMLQ=25;MQ=60.0;NF=3;NR=0;PP=44;QD=18.3333333333;SC=GCAAGTAAGTATGTGTGTGTG;SbPval=1.0;Source=Platypus;TC=13;TCF=13;TCR=0;TR=3;WE=102432924;WS=102432914;set=Platypus	GT:AD:AF:DP	1/0:10,3:0.23:13
chr5	102433409	rs34813	G	A	4747.77	.	AC=1;AF=0.500;AN=2;DB;DP=513;set=Intersection	GT:AD:AF:DP	0/1:273,237:0.46:510
chr5	102456254	rs26523	C	T	2282.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:93,108:0.54:201
chr5	102456304	rs26524	A	G	1138.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:46,55:0.54:101
chr5	102472405	rs145009579	T	C	1885.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:103,88:0.46:191
chr5	102484797	rs138096296	TAC	T	74.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.063;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=1.664;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.04;ReadPosRankSum=-0.871;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:63,9:0.12:72
chr5	102488571	rs27896	T	C	468.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:19,19:0.50:38
chr5	102489511	rs34767	T	G	629.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:30,32:0.52:62
chr5	102494751	rs257292	A	G	266.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:17,12:0.41:29
chr5	102512447	rs152134	C	G	225.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:18,11:0.38:29
chr5	102512570	rs11408825	C	CA	3639.73	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr5	102520400	rs26821	A	C	3760.77	.	AC=1;AF=0.500;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	0/1:184,189:0.51:373
chr5	102537200	rs154290	T	G	659.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:14,30:0.68:44
chr5	102537379	rs28025	A	G	695.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:14,32:0.70:46
chr5	102890560	rs11373550	G	GA	866.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.241;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=0.728;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.132;QD=7.28;ReadPosRankSum=0.407;SOR=0.579;set=HC	GT:AD:AF:DP	0/1:62,57:0.48:119
chr5	102891695	rs10045774	A	G	4510.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.281;ClippingRankSum=0.000;DB;DP=461;ExcessHet=3.0103;FS=0.518;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.96;ReadPosRankSum=1.199;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:230,223:0.49:453
chr5	102894447	rs3734087	A	G	666.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:24,25:0.51:49
chr5	103978833	rs67667580	A	G	264.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.766;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.35;ReadPosRankSum=-0.161;SOR=0.591;set=HC	GT:AD:AF:DP	0/1:20,16:0.44:36
chr5	103978969	rs33818	T	C	2647.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr5	106722838	rs186744617	A	G	504.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:29,25:0.46:54
chr5	106723107	rs11377163	C	CT	943.73	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:31,49:0.61:80
chr5	107006446	rs35553	T	G	4070.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr5	107560101	rs2044710	A	G	2473.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr5	107683989	rs3756573	T	A	630.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:25,25:0.50:50
chr5	107684324	rs1862195	C	T	1093.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:45,46:0.51:91
chr5	107703446	rs34546708	CAAG	C	4808.73	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr5	108168451	rs376837075	CT	C	373.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.907;ClippingRankSum=0.000;DB;DP=251;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=2.475;QD=1.61;ReadPosRankSum=0.713;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:161,71:0.31:232
chr5	108203451	rs34195313	G	GT	860.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.641;ClippingRankSum=0.000;DB;DP=309;ExcessHet=3.0103;FS=1.816;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=2.218;QD=2.91;ReadPosRankSum=1.422;SOR=0.870;set=HC	GT:AD:AF:DP	0/1:206,90:0.30:296
chr5	108290403	.	G	GT	243.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.044;ClippingRankSum=0.000;DP=165;ExcessHet=3.0103;FS=1.723;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.53;ReadPosRankSum=-0.358;SOR=0.919;set=HC	GT:AD:AF:DP	0/1:124,35:0.22:159
chr5	108436035	.	T	C	513.77	.	AC=1;AF=0.500;AN=2;DP=59;set=Intersection	GT:AD:AF:DP	0/1:31,25:0.45:56
chr5	108516629	rs6594349	A	G	2008.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:79,93:0.54:172
chr5	108523211	.	G	A	1484.77	.	AC=1;AF=0.500;AN=2;DP=152;set=Intersection	GT:AD:AF:DP	0/1:73,72:0.50:145
chr5	108672946	rs246105	C	T	2058.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:52,93:0.64:145
chr5	108679870	rs142828555	T	TTTAA	2058.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.136;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.858;MLEAC=1;MLEAF=0.500;MQ=60.37;MQRankSum=1.512;QD=24.80;ReadPosRankSum=-0.401;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:35,48:0.58:83
chr5	108680647	rs441798	C	A	134.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:5,6:0.55:11
chr5	108691738	rs2431253	A	T	3112.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:103,138:0.57:241
chr5	108713970	rs10042721	C	T	5300.77	.	AC=1;AF=0.500;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	0/1:222,240:0.52:462
chr5	108713982	rs12523186	T	C	5758.77	.	AC=1;AF=0.500;AN=2;DB;DP=501;set=Intersection	GT:AD:AF:DP	0/1:229,264:0.54:493
chr5	108714298	rs1045706	T	C	9211.77	.	AC=1;AF=0.500;AN=2;DB;DP=843;set=Intersection	GT:AD:AF:DP	0/1:403,436:0.52:839
chr5	108717157	rs2288531	T	C	588.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:15,23:0.61:38
chr5	108719151	rs1045704	G	A	4655.77	.	AC=1;AF=0.500;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	0/1:210,228:0.52:438
chr5	109034177	rs6869581	A	G	2321.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:114,111:0.49:225
chr5	109034215	rs10652843	G	GGT	3427.73	.	AC=1;AF=0.500;AN=2;DB;DP=181;MQ=60.06;set=Intersection	GT:AD:AF:DP	0/1:86,89:0.51:175
chr5	109049518	.	T	TG	2207.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.689;ClippingRankSum=0.000;DP=150;ExcessHet=3.0103;FS=0.787;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.77;ReadPosRankSum=1.821;SOR=0.827;set=HC	GT:AD:AF:DP	0/1:60,80:0.57:140
chr5	109110537	rs6894260	T	A	4220.77	.	AC=1;AF=0.500;AN=2;DB;DP=454;MQ=60.02;set=Intersection	GT:AD:AF:DP	0/1:248,205:0.45:453
chr5	109124793	rs17162238	A	G	1069.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:47,54:0.53:101
chr5	109125072	rs2112212	C	G	372.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	109125258	rs17162241	C	G	906.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:38,43:0.53:81
chr5	109125416	rs1019446	T	C	447.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr5	109152873	rs112578884	ATATATGTATATG	A	1128.73	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:24,30:0.56:54
chr5	109152897	rs56239994	G	A	595.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:42,27:0.39:69
chr5	109155658	rs10055921	A	G	235.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:15,13:0.46:28
chr5	109156184	rs17489649	A	G	204.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:23,13:0.36:36
chr5	109159348	rs28756687	G	A	734.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:22,32:0.59:54
chr5	109181682	rs3186988	A	T	19540.77	.	AC=2;AF=1.00;AN=2;DB;DP=751;set=Intersection	GT:AD:AF:DP	1/1:0,738:1.00:738
chr5	109181823	rs72814826	G	A	1245.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:29,49:0.63:78
chr5	109940707	rs6897672	G	T	312.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:15,13:0.46:28
chr5	109946411	rs4277958	G	A	1633.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:33,61:0.65:94
chr5	109953869	rs6882222	T	C	179.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:9,8:0.47:17
chr5	109960960	rs72771461	T	C	4471.77	.	AC=1;AF=0.500;AN=2;DB;DP=480;set=Intersection	GT:AD:AF:DP	0/1:255,221:0.46:476
chr5	109960989	rs61730920	A	G	3736.77	.	AC=1;AF=0.500;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	0/1:257,193:0.43:450
chr5	109963430	rs6886702	A	C	131.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:3,6:0.67:9
chr5	109973902	rs1422495	T	G	1217.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:57,55:0.49:112
chr5	110079450	rs17446534	T	C	1174.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:65,59:0.48:124
chr5	110407507	rs2289276	C	T	1174.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:71,55:0.44:126
chr5	110408705	rs11466741	C	T	1738.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:82,76:0.48:158
chr5	110409067	rs2289277	C	G	924.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:43,44:0.51:87
chr5	110428060	rs145437203	T	C	5331.77	.	AC=1;AF=0.500;AN=2;DB;DP=460;set=Intersection	GT:AD:AF:DP	0/1:210,247:0.54:457
chr5	110430488	rs17623144	C	G	226.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chr5	110434307	rs13153937	G	A	186.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:10,8:0.44:18
chr5	110436450	rs10038177	C	T	627.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:33,33:0.50:66
chr5	110438000	rs35339070	C	CA	209.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.968;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=2.846;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=1.300;QD=4.28;ReadPosRankSum=1.017;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:28,21:0.43:49
chr5	110439509	rs11241095	A	G	1686.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:76,82:0.52:158
chr5	110443228	rs10043631	C	T	243.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:20,11:0.35:31
chr5	110446091	rs34962120	G	A	279.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:24,15:0.38:39
chr5	110446741	rs13161853	C	A	902.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:42,38:0.47:80
chr5	110447077	.	A	C	544.77	.	AC=1;AF=0.500;AN=2;DP=53;set=Intersection	GT:AD:AF:DP	0/1:32,21:0.40:53
chr5	110448751	.	ATT	A	390.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.135;ClippingRankSum=0.000;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.75;ReadPosRankSum=0.322;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:42,26:0.38:68
chr5	110448752	rs35527062	T	TA	529.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.499;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.03;ReadPosRankSum=-0.433;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:37,29:0.44:66
chr5	110454681	rs17553936	A	G	3498.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:146,154:0.51:300
chr5	110456704	rs13186912	A	T	552.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:39,26:0.40:65
chr5	110679657	rs446176	C	G	4585.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr5	110679873	rs387238	G	A	1718.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:95,78:0.45:173
chr5	110710360	rs306067	G	C	2514.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.45;SOR=3.426;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr5	110710360	.	GTTACG	CTTACA,CTTACG	683	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.23;FR=0.5000,0.5000;HP=3;HapScore=2;MGOF=2;MMLQ=28;MQ=60.0;NF=20,56;NR=2,7;PP=319,683;QD=16.9303579483;SC=CTGGCTGTATGTTACGTCAGA;SbPval=0.85;Source=Platypus;TC=66;TCF=56;TCR=10;TR=22,63;WE=110710373;WS=110710350;set=Platypus	GT:AF:DP	0/1:0.33:66
chr5	110710365	rs55663111	G	A	515.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.788;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.45;ReadPosRankSum=-0.108;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:52,28:0.35:80
chr5	110710699	rs5870446	A	AG	5381.73	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr5	110712491	rs306129	A	G	3130.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr5	110730557	rs523389	C	T	3735.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr5	110782598	rs41296557	A	G	1328.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:74,58:0.44:132
chr5	110782634	rs34007984	T	G	574.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:42,25:0.37:67
chr5	110784822	rs2116824	A	G	7657.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:2,290:0.99:292
chr5	110819753	rs25925	G	C	2101.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr5	110840744	rs11454826	G	GA	489.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.157;ClippingRankSum=0.000;DB;DP=439;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=2.910;QD=1.34;ReadPosRankSum=-0.041;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:287,79:0.22:366
chr5	111013858	rs26042	G	A	4921.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr5	111066820	rs73223651	T	G	5446.77	.	AC=1;AF=0.500;AN=2;DB;DP=507;set=Intersection	GT:AD:AF:DP	0/1:228,261:0.53:489
chr5	111070298	rs3756605	T	G	341.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:11,13:0.54:24
chr5	111071106	rs3797722	T	A	845.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:39,33:0.46:72
chr5	111071297	rs3797723	A	G	6257.77	.	AC=1;AF=0.500;AN=2;DB;DP=675;set=Intersection	GT:AD:AF:DP	0/1:366,304:0.45:670
chr5	111091630	rs144568737	TTAAGA	T	2903.73	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:76,76:0.50:152
chr5	111479750	rs62372418	T	C	1305.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:48,53:0.52:101
chr5	111497358	rs3816657	T	G	4904.77	.	AC=1;AF=0.500;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	0/1:195,230:0.54:425
chr5	111500816	.	C	CTAAAA	2896	.	AC=1;AF=0.500;AN=2;BRF=0.43;FR=0.5000;HP=2;HapScore=4;MGOF=2;MMLQ=27;MQ=60.0;NF=5;NR=28;PP=2896;QD=20;SC=CATTTCTTCTCTAAAATATAT;SbPval=0.14;Source=Platypus;TC=99;TCF=8;TCR=91;TR=33;WE=111500832;WS=111500806;set=Platypus	GT:AD:AF:DP	1/0:66,33:0.33:99
chr5	111500822	.	T	TAAA	2961.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.579;ClippingRankSum=0.000;DP=163;ExcessHet=3.0103;FS=2.143;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.49;ReadPosRankSum=0.636;SOR=0.511;set=HC	GT:AD:AF:DP	0/1:74,78:0.51:152
chr5	111500824	.	T	C	2904	.	AC=1;AF=0.500;AN=2;BRF=0.43;FR=0.5000;HP=2;HapScore=4;MGOF=2;MMLQ=28;MQ=60.0;NF=15;NR=30;PP=2904;QD=20;SC=CTCTAAAATATATTTGAAAAA;SbPval=0.49;Source=Platypus;TC=112;TCF=36;TCR=76;TR=45;WE=111500832;WS=111500806;set=Platypus	GT:AD:AF:DP	1/0:67,45:0.40:112
chr5	111500824	rs33929905	T	TAC	2983.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.184;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=1.369;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.16;ReadPosRankSum=0.552;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:74,74:0.50:148
chr5	111504479	rs7703522	C	T	5987.77	.	AC=1;AF=0.500;AN=2;DB;DP=741;set=Intersection	GT:AD:AF:DP	0/1:419,313:0.43:732
chr5	111504611	rs114470084	T	G	3364.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:108,135:0.56:243
chr5	111505885	rs1560052	T	G	605.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:13,25:0.66:38
chr5	111506069	rs10040749	G	A	2650.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:130,127:0.49:257
chr5	111519740	rs1560058	T	C	5257.77	.	AC=1;AF=0.500;AN=2;DB;DP=470;set=Intersection	GT:AD:AF:DP	0/1:214,249:0.54:463
chr5	111519904	rs59653731	C	T	1924.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:89,94:0.51:183
chr5	111530284	rs7719346	A	G	1645.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:73,80:0.52:153
chr5	111531387	rs149373122	A	T	5003.77	.	AC=1;AF=0.500;AN=2;DB;DP=525;set=Intersection	GT:AD:AF:DP	0/1:274,239:0.47:513
chr5	111545670	rs890757	C	G	1334.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:43,62:0.59:105
chr5	111595745	rs28620667	C	A	2712.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:105,112:0.52:217
chr5	111610875	rs72781647	T	C	706.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:36,32:0.47:68
chr5	111611076	rs12521830	A	G	1363.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:30,62:0.67:92
chr5	111611160	rs139210661	TATA	T	338.73	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:15,11:0.42:26
chr5	111615926	rs78003722	G	A	4876.77	.	AC=1;AF=0.500;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	0/1:214,230:0.52:444
chr5	112111309	.	T	TA	61.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.366;ClippingRankSum=0.000;DP=81;ExcessHet=3.0103;FS=4.148;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.79;ReadPosRankSum=0.233;SOR=1.360;set=HC	GT:AD:AF:DP	0/1:63,15:0.19:78
chr5	112162854	rs2229992	T	C	7799.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr5	112164561	rs351771	G	A	3967.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr5	112175770	rs41115	G	A	15096.77	.	AC=2;AF=1.00;AN=2;DB;DP=546;set=Intersection	GT:AD:AF:DP	1/1:0,536:1.00:536
chr5	112176325	rs42427	G	A	8283.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr5	112176559	rs866006	T	G	11749.77	.	AC=2;AF=1.00;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	1/1:1,445:1.00:446
chr5	112176756	rs459552	T	A	7381.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr5	112177171	rs465899	G	A	17255.77	.	AC=2;AF=1.00;AN=2;DB;DP=631;set=Intersection	GT:AD:AF:DP	1/1:0,610:1.00:610
chr5	112196949	rs460137	A	C	4612.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr5	112197986	rs431287	A	T	723.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr5	112198015	rs372492	A	G	1134.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr5	112198071	rs112093457	AAGG	A	4635.73	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr5	112200098	rs351767	A	G	936.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr5	112217636	.	G	GT	104.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.747;ClippingRankSum=0.000;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.51;ReadPosRankSum=1.328;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:9,10:0.53:19
chr5	112238300	rs5870516	GA	G	633.73	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:13,19:0.59:32
chr5	112257242	rs33570	G	C	219.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr5	112312528	rs33556	T	C	4859.77	.	AC=1;AF=0.500;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	0/1:219,220:0.50:439
chr5	112312676	rs33555	T	C	23838.77	.	AC=2;AF=1.00;AN=2;DB;DP=886;set=Intersection	GT:AD:AF:DP	1/1:0,881:1.00:881
chr5	112312736	rs33554	G	C	5745.77	.	AC=1;AF=0.500;AN=2;DB;DP=523;set=Intersection	GT:AD:AF:DP	0/1:239,282:0.54:521
chr5	112321488	rs33543	A	G	2428.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.072;ClippingRankSum=0.000;DB;DP=198;ExcessHet=3.0103;FS=3.980;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.52;ReadPosRankSum=-0.926;SOR=0.447;set=HC	GT:AD:AF:DP	0/1:93,101:0.52:194
chr5	112328267	rs3733968	C	T	1118.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:39,50:0.56:89
chr5	112328377	rs3733969	A	G	7802.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr5	112339811	rs62364373	A	G	1483.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:48,60:0.56:108
chr5	112343544	rs2052484	G	A	1485.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr5	112346431	rs58980024	TG	T	131.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.465;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.51;MQRankSum=-1.379;QD=1.48;ReadPosRankSum=0.898;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:65,24:0.27:89
chr5	112346432	rs61417979	GTT	G	600.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.476;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=0.880;MLEAC=1;MLEAF=0.500;MQ=60.51;MQRankSum=1.026;QD=6.01;ReadPosRankSum=0.811;SOR=0.509;set=HC	GT:AD:AF:DP	0/1:62,38:0.38:100
chr5	112349070	rs9326869	T	C	9631.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	1/1:0,372:1.00:372
chr5	112364945	rs1363333	A	G	481.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:15,20:0.57:35
chr5	112379083	rs4627978	A	G	2910.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr5	112379095	rs4277906	T	C	3762.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr5	112379289	rs2227948	G	A	4075.77	.	AC=1;AF=0.500;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	0/1:253,202:0.44:455
chr5	112379434	rs4705755	T	A	1439.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:75,63:0.46:138
chr5	112384802	rs6594664	G	A	8305.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr5	112385004	rs7726296	CA	GC	3781.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;JOINED;set=Intersection	GT:AD:AF:DP	0/1:146,102:0.41:248
chr5	112385035	rs7708603	T	G	1318.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:112,72:0.39:184
chr5	112389747	rs4705536	C	G	3545.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr5	112399791	rs2227947	G	A	4154.77	.	AC=1;AF=0.500;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	0/1:200,205:0.51:405
chr5	112399934	rs10477486	C	G	1717.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:77,76:0.50:153
chr5	112406702	rs6888031	T	C	319.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:26,17:0.40:43
chr5	112406718	rs4705771	A	G	2082.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr5	112406785	rs149928825	G	GCCTCGCGCTGTCTT	1322.73	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:78,33:0.30:111
chr5	112406862	rs2227950	G	A	810.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:82,47:0.36:129
chr5	112419935	rs62374684	A	C	1184.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:102,63:0.38:165
chr5	112437714	rs28673913	G	A	1638.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:85,73:0.46:158
chr5	112439941	rs6594681	T	C	4626.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr5	112440142	rs6869399	T	C	437.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:22,23:0.51:45
chr5	112479004	rs2227949	T	C	9396.77	.	AC=2;AF=1.00;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	1/1:0,353:1.00:353
chr5	112487137	rs1947026	A	C	2745.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:159,139:0.47:298
chr5	112629887	rs485210	C	T	1651.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr5	112676191	rs10900684	A	G	4723.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr5	112824039	rs348942	T	C	4451.77	.	AC=1;AF=0.500;AN=2;DB;DP=588;set=Intersection	GT:AD:AF:DP	0/1:283,232:0.45:515
chr5	112849801	rs1862315	A	C	2775.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:123,131:0.52:254
chr5	112849823	rs2416281	C	T	2438.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:105,115:0.52:220
chr5	112851088	rs11241213	T	A	397.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.086;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=1.203;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.29;ReadPosRankSum=-0.202;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:25,23:0.48:48
chr5	112851109	rs1820057	A	G	368.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:20,17:0.46:37
chr5	112851121	rs1035408	C	T	839.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr5	112853189	rs1833678	T	C	2118.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:67,96:0.59:163
chr5	112868693	rs6594732	C	A	2523.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:165,128:0.44:293
chr5	112874987	rs4334877	C	G	105.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr5	112876889	rs200804870	ATT	A	932.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.031;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=3.706;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=1.804;QD=9.23;ReadPosRankSum=0.095;SOR=1.328;set=HC	GT:AD:AF:DP	0/1:53,48:0.48:101
chr5	112884197	rs4444963	C	G	3335.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr5	112884380	rs6889574	G	A	1692.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:101,85:0.46:186
chr5	112884594	rs6889501	A	G	2285.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:104,113:0.52:217
chr5	112884728	rs4639215	G	A	3798.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr5	112884752	rs6594734	G	A	668.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:63,37:0.37:100
chr5	112888875	rs72805421	C	T	1382.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.533;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.788;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.71;ReadPosRankSum=0.791;SOR=0.833;set=HC	GT:AD:AF:DP	0/1:56,38:0.40:94
chr5	112888882	rs72805422	A	T	1339.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.016;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=1.639;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.88;ReadPosRankSum=1.375;SOR=0.931;set=HC	GT:AD:AF:DP	0/1:65,39:0.38:104
chr5	112889065	rs60871281	G	A	2044.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:86,94:0.52:180
chr5	112889374	rs10071816	G	A	6391.77	.	AC=1;AF=0.500;AN=2;DB;DP=701;set=Intersection	GT:AD:AF:DP	0/1:374,323:0.46:697
chr5	112889566	rs34947411	ATCT	A	1512.73	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:59,42:0.42:101
chr5	112889608	rs10079758	T	A	781.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:43,37:0.46:80
chr5	112889821	rs140119986	CCTCTA	C	238.73	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,7:0.54:13
chr5	112892000	rs2162842	G	A	183.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:3,7:0.70:10
chr5	112898969	rs35926701	A	G	379.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:16,16:0.50:32
chr5	112899250	rs6886199	G	A	1051.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:36,44:0.55:80
chr5	112899300	rs6867181	T	A	399.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.077;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.38;ReadPosRankSum=-1.626;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:10,16:0.62:26
chr5	112899300	.	TG	AA	242	.	AC=1;AF=0.500;AN=2;BRF=0.24;FR=0.5000;HP=2;HapScore=2;MGOF=13;MMLQ=28;MQ=60.0;NF=1;NR=13;PP=242;QD=21.1048482044;SC=TTTGTCCTCCTGCATGTGTCC;SbPval=0.7;Source=Platypus;TC=24;TCF=2;TCR=22;TR=14;WE=112899309;WS=112899290;set=Platypus	GT:AD:AF:DP	1/0:10,14:0.58:24
chr5	112899301	rs6886338	G	A	1013.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.99;SOR=4.255;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr5	112899573	rs6867579	T	C	2501.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:113,110:0.49:223
chr5	112899702	rs6886628	A	G	6906.77	.	AC=1;AF=0.500;AN=2;DB;DP=723;set=Intersection	GT:AD:AF:DP	0/1:371,343:0.48:714
chr5	112899876	rs11241214	G	A	3756.77	.	AC=1;AF=0.500;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	0/1:180,181:0.50:361
chr5	112901494	rs3763139	G	C	6101.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr5	112917278	rs11748794	T	G	4440.77	.	AC=1;AF=0.500;AN=2;DB;DP=539;set=Intersection	GT:AD:AF:DP	0/1:300,228:0.43:528
chr5	112919941	rs2288449	G	A	1575.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:76,75:0.50:151
chr5	112926982	rs2303717	A	G	2361.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr5	112927686	rs10077431	C	A	1240.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:54,56:0.51:110
chr5	112927888	rs113314175	A	ATT	1293.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.129;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=0.970;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.21;ReadPosRankSum=2.588;SOR=0.904;set=HC	GT:AD:AF:DP	0/1:62,44:0.42:106
chr5	112927900	rs73242858	A	T	1447.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.995;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=3.774;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.16;ReadPosRankSum=0.786;SOR=1.106;set=HC	GT:AD:AF:DP	0/1:64,46:0.42:110
chr5	112928865	rs3763138	G	T	268.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:10,11:0.52:21
chr5	112929013	rs1132528	T	A	6490.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr5	113698544	rs40179	G	C	7546.77	.	AC=1;AF=0.500;AN=2;DB;DP=783;set=Intersection	GT:AD:AF:DP	0/1:417,357:0.46:774
chr5	113698631	rs111266015	T	TGCC	3411.73	.	AC=1;AF=0.500;AN=2;DB;DP=476;set=Intersection	GT:AD:AF:DP	0/1:222,169:0.43:391
chr5	113822197	rs72801872	G	A	588.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.566;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.32;ReadPosRankSum=-0.371;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:26,26:0.50:52
chr5	113822205	rs12719181	C	T	2080.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.50;SOR=2.262;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr5	113829121	rs1841251	A	G	7485.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr5	114462355	rs2974617	C	T	14656.77	.	AC=2;AF=1.00;AN=2;DB;DP=540;set=Intersection	GT:AD:AF:DP	1/1:0,531:1.00:531
chr5	114462589	rs2921623	A	C	6297.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr5	114566753	.	AAAT	A	101.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.423;ClippingRankSum=0.000;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.63;ReadPosRankSum=-0.180;SOR=0.332;set=HC	GT:AD:AF:DP	0/1:23,5:0.18:28
chr5	114566874	rs2303001	A	T	63.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.189;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.11;ReadPosRankSum=-1.579;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr5	114611356	rs267295	A	C	1490.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr5	114632423	rs3111171	C	T	300.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr5	115167595	rs3215095	CT	C	974.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr5	115173610	rs145826751	A	AC	249.73	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,8:0.67:12
chr5	115176589	rs26536	A	G	3512.77	.	AC=1;AF=0.500;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	0/1:155,176:0.53:331
chr5	115177207	rs74844425	T	C	3839.77	.	AC=1;AF=0.500;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	0/1:214,190:0.47:404
chr5	115177668	rs144226661	G	GAGGC	892.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.077;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=25.556;MLEAC=1;MLEAF=0.500;MQ=59.81;MQRankSum=0.000;QD=6.56;ReadPosRankSum=-0.643;SOR=0.055;set=HC	GT:AD:AF:DP	0/1:107,29:0.21:136
chr5	115188660	rs152368	A	G	4095.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr5	115238716	rs41332950	G	A	2411.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:86,116:0.57:202
chr5	115298232	rs9326980	G	C	6534.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr5	115298378	rs10062297	C	T	6271.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr5	115298475	rs12520255	T	C	10969.77	.	AC=2;AF=1.00;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	1/1:0,401:1.00:401
chr5	115298518	rs12522632	A	G	15230.77	.	AC=2;AF=1.00;AN=2;DB;DP=581;set=Intersection	GT:AD:AF:DP	1/1:0,576:1.00:576
chr5	115299027	rs190754806	C	T	1416.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:65,64:0.50:129
chr5	115320215	rs78947008	A	T	1353.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:79,58:0.42:137
chr5	115336215	rs2162754	G	A	4560.77	.	AC=1;AF=0.500;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	0/1:237,221:0.48:458
chr5	115336862	rs7712021	T	C	8352.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:2,319:0.99:321
chr5	115338732	rs1560080	G	A	195.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr5	115339086	rs6594929	A	G	773.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr5	115341611	rs10078748	G	T	10186.77	.	AC=2;AF=1.00;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	1/1:0,384:1.00:384
chr5	115341638	rs10078759	G	C	8326.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr5	115346632	rs75884633	C	T	297.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:16,14:0.47:30
chr5	115351150	rs10214076	T	G	879.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:44,41:0.48:85
chr5	115351241	rs17138668	C	A	993.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:27,37:0.58:64
chr5	115351498	rs17485148	C	T	3425.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:163,163:0.50:326
chr5	115387358	rs77950036	G	T	1325.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:54,60:0.53:114
chr5	115387382	rs78290575	C	G	1017.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:37,45:0.55:82
chr5	115387421	rs1541801	A	G	280.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:20,13:0.39:33
chr5	115389626	rs954763	A	C	1068.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:26,44:0.63:70
chr5	115389946	rs2662472	A	C	857.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.316;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=2.706;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.65;ReadPosRankSum=-2.185;SOR=0.280;set=HC	GT:AD:AF:DP	0/1:16,30:0.65:46
chr5	115394357	rs6860908	T	C	725.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr5	115394396	rs6880121	C	G	650.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:23,27:0.54:50
chr5	115394551	rs6880325	C	T	2620.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:116,118:0.50:234
chr5	115394570	rs74335010	C	T	2349.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:116,115:0.50:231
chr5	115394626	rs6880759	G	A,T	6041.77	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=253;set=Intersection	GT:AF:DP	1/2:0.54,0.46:253
chr5	115420598	rs3087831	G	A	861.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:31,36:0.54:67
chr5	115420628	rs3087832	G	A	2047.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.575;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=1.104;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.14;ReadPosRankSum=-0.169;SOR=0.884;set=HC	GT:AD:AF:DP	0/1:53,54:0.50:107
chr5	115420634	rs3776796	C	G	2186.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.818;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=1.107;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.85;ReadPosRankSum=-0.388;SOR=0.902;set=HC	GT:AD:AF:DP	0/1:57,59:0.51:116
chr5	115420897	rs74583480	G	A	1958.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.353;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=3.991;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.23;ReadPosRankSum=-0.483;SOR=0.417;set=HC	GT:AD:AF:DP	0/1:79,69:0.47:148
chr5	115420905	rs73780832	G	A	1719.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.915;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=6.283;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.95;ReadPosRankSum=-1.611;SOR=0.322;set=HC	GT:AD:AF:DP	0/1:64,51:0.44:115
chr5	115426746	rs10065554	T	C	605.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:36,30:0.45:66
chr5	115428334	rs1129494	G	T	4627.77	.	AC=1;AF=0.500;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	0/1:209,226:0.52:435
chr5	115428381	rs1129495	T	G	3240.77	.	AC=1;AF=0.500;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	0/1:203,158:0.44:361
chr5	115428439	rs6894046	T	A	2339.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:77,97:0.56:174
chr5	115469773	rs1129496	C	T	6526.77	.	AC=1;AF=0.500;AN=2;DB;DP=659;set=Intersection	GT:AD:AF:DP	0/1:336,317:0.49:653
chr5	115628117	rs6866938	C	T	3488.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.300;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=1.839;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.36;ReadPosRankSum=-0.353;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:98,92:0.48:190
chr5	115628133	rs375420756	TG	T	253.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.579;ClippingRankSum=0.000;DB;DP=233;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.19;ReadPosRankSum=0.836;SOR=0.742;set=HC	GT:AD:AF:DP	0/1:164,49:0.23:213
chr5	115783553	rs17139805	C	T	2019.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:114,92:0.45:206
chr5	115783597	rs139130681	G	A	1338.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:48,57:0.54:105
chr5	115784843	rs1968362	G	A	1258.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr5	115803578	.	AGTGGTGGTGGTG	A,AGTGGTGGTG	12279.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.294;ClippingRankSum=0.000;DP=405;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.05;MQRankSum=0.144;QD=40.26;ReadPosRankSum=-0.893;SOR=0.782;set=HC	GT:AD:AF:DP	1/2:2,150,153:0.49,0.50:305
chr5	115811220	rs423834	T	C	6757.77	.	AC=1;AF=0.500;AN=2;DB;DP=707;set=Intersection	GT:AD:AF:DP	0/1:365,338:0.48:703
chr5	115813726	rs34966	A	G	19573.77	.	AC=2;AF=1.00;AN=2;DB;DP=726;set=Intersection	GT:AD:AF:DP	1/1:0,720:1.00:720
chr5	115822392	rs2059874	G	A	1091.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:82,52:0.39:134
chr5	115827356	rs154599	C	T	2060.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:174,105:0.38:279
chr5	115827407	rs154600	G	A	2951.77	.	AC=1;AF=0.500;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	0/1:218,151:0.41:369
chr5	115831305	rs32973	G	A	274.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:11,12:0.52:23
chr5	115837772	rs154466	G	A	4317.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr5	115838117	rs54100	C	G	1010.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr5	117329051	rs5870786	T	TAGAC,TAGACAC	10087.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=271;set=Intersection	GT:AF:DP	1/2:0.63,0.37:235
chr5	117329138	rs4404718	G	A	701.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:29,35:0.55:64
chr5	117896563	rs5870817	T	TATAG	314.73	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr5	117938632	.	CACACAT	C	111.73	.	AC=1;AF=0.500;ALERT;AN=2;DP=54;set=Intersection	GT:AD:AF:DP	0/1:24,9:0.27:33
chr5	117938634	rs147234228	CACAT	C	294.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:17,15:0.47:32
chr5	118456977	rs10056088	T	A	640.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.191;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.64;MQRankSum=0.000;QD=11.65;ReadPosRankSum=-2.400;SOR=0.926;set=HC	GT:AD:AF:DP	0/1:29,26:0.47:55
chr5	118469070	.	G	A	4286.77	.	AC=1;AF=0.500;AN=2;DP=475;set=Intersection	GT:AD:AF:DP	0/1:259,208:0.45:467
chr5	118480316	rs4895362	G	A	755.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:57,40:0.41:97
chr5	118484804	rs7734532	G	A	5637.77	.	AC=1;AF=0.500;AN=2;DB;DP=581;set=Intersection	GT:AD:AF:DP	0/1:310,262:0.46:572
chr5	118490205	rs78020394	C	T	793.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:35,37:0.51:72
chr5	118513246	rs34139050	C	CTG	2196.73	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:62,58:0.48:120
chr5	118532034	rs6595178	A	C	7793.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr5	118542406	rs3797335	C	T	736.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr5	118556350	rs2271059	C	T	4144.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr5	118574562	rs11241496	A	G	808.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:21,31:0.60:52
chr5	118669304	rs56329027	C	T	2901.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:141,148:0.51:289
chr5	118690998	rs3813309	A	G	2368.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr5	118691121	rs73237297	G	T	1507.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:122,78:0.39:200
chr5	118691737	rs3797340	C	G	1215.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:71,63:0.47:134
chr5	118691784	rs3797341	T	C	5200.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr5	118691832	rs3797342	C	T	1483.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:104,75:0.42:179
chr5	118691888	rs3797343	A	C	2350.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr5	118691929	rs6595185	A	T	1414.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr5	118727161	rs72788136	G	A	3874.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:161,188:0.54:349
chr5	118727224	rs3733855	A	G	3956.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr5	118728495	.	CT	C	245.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.222;ClippingRankSum=0.000;DP=255;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.02;ReadPosRankSum=1.460;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:186,55:0.23:241
chr5	118728953	rs3203922	G	C	23870.77	.	AC=2;AF=1.00;AN=2;DB;DP=887;set=Intersection	GT:AD:AF:DP	1/1:2,873:1.00:875
chr5	118788196	rs26180	C	G	773.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:32,40:0.56:72
chr5	118809533	rs10601221	CCA	C	2036.73	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:64,71:0.53:135
chr5	118811533	rs25640	G	A	1386.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:57,67:0.54:124
chr5	118813240	rs457106	T	C	3210.77	.	AC=1;AF=0.500;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	0/1:189,159:0.46:348
chr5	118813316	rs463513	A	G	858.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:60,37:0.38:97
chr5	118825051	rs12653702	G	C	1966.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:108,88:0.45:196
chr5	118831460	rs80063787	G	A	103.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.147;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.10;ReadPosRankSum=1.616;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:10,7:0.41:17
chr5	118837834	rs55708333	A	G	555.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:42,27:0.39:69
chr5	118845089	rs32663	G	A	451.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:23,23:0.50:46
chr5	118845139	rs32664	G	A	1177.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr5	118845245	rs68024523	T	A	127.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.834;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=1.957;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.52;ReadPosRankSum=-0.087;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:9,8:0.47:17
chr5	118860938	rs11539471	T	C	2456.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:143,129:0.47:272
chr5	118861713	rs11205	A	G	1417.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:115,73:0.39:188
chr5	118862735	rs73251672	T	C	756.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:33,38:0.54:71
chr5	118862971	rs2636961	C	T	1587.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr5	118877566	rs28943593	C	T	994.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:51,53:0.51:104
chr5	118965623	rs2434599	A	G	3394.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr5	118968604	rs17469691	C	T	2043.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:91,92:0.50:183
chr5	120021817	rs17853861	C	A	5857.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.405;ClippingRankSum=0.000;DB;DP=589;ExcessHet=3.0103;FS=0.518;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.98;ReadPosRankSum=0.181;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:301,286:0.49:587
chr5	120021817	.	CCG	ACA	2944	.	AC=1;AF=0.500;AN=2;BRF=0.4;FR=0.5000;HP=2;HapScore=1;MGOF=1;MMLQ=27;MQ=60.0;NF=98;NR=99;PP=2944;QD=20;SC=CCCAGCACACCCGTCTGCTAT;SbPval=0.52;Source=Platypus;TC=411;TCF=204;TCR=207;TR=197;WE=120021827;WS=120021807;set=Platypus	GT:AD:AF:DP	1/0:214,197:0.48:411
chr5	120021819	rs1158194	G	A	20647.77	.	AC=2;AF=1.00;AN=2;DB;DP=586;set=Intersection	GT:AD:AF:DP	1/1:0,584:1.00:584
chr5	121330223	rs6595336	C	T	1663.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr5	121726714	rs1946649	G	A	850.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:36,39:0.52:75
chr5	121761021	rs2242224	G	A	3895.77	.	AC=1;AF=0.500;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	0/1:206,182:0.47:388
chr5	121767643	rs77615391	C	T	2407.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.058;ClippingRankSum=0.000;DB;DP=315;ExcessHet=3.0103;FS=0.878;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.74;ReadPosRankSum=-0.712;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:187,124:0.40:311
chr5	121776301	rs2290987	T	C	3664.77	.	AC=1;AF=0.500;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	0/1:163,170:0.51:333
chr5	121779390	rs3811879	G	C	3371.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:171,157:0.48:328
chr5	121785398	rs2737092	T	C	1101.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:38,45:0.54:83
chr5	122165470	.	T	TACAC	329.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.151;ClippingRankSum=0.000;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=1.268;QD=11.37;ReadPosRankSum=-0.293;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:18,11:0.38:29
chr5	122281709	rs5871017	G	GT	120.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.459;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=5.415;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.30;ReadPosRankSum=1.076;SOR=0.264;set=HC	GT:AD:AF:DP	0/1:73,20:0.22:93
chr5	122335807	rs45551539	G	A	6596.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr5	122359502	.	A	AACACACACACAC	1089.73	.	AC=2;AF=1.00;AN=2;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.52;QD=38.92;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr5	122359640	rs451195	T	C	4646.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr5	122359839	rs144851383	G	GAC	1673.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr5	122359840	rs374638812	CGTTTTTT	C	1672.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr5	122491826	rs35231752	A	AT	49.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.998;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=8.921;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.79;ReadPosRankSum=1.038;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:51,12:0.19:63
chr5	122682154	rs2303719	T	G	2194.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:98,89:0.48:187
chr5	122682348	rs1047438	A	G	10716.77	.	AC=1;AF=0.500;AN=2;DB;DP=1145;set=Intersection	GT:AD:AF:DP	0/1:593,540:0.48:1133
chr5	122685727	rs1047437	C	G	4727.77	.	AC=1;AF=0.500;AN=2;DB;DP=489;set=Intersection	GT:AD:AF:DP	0/1:251,235:0.48:486
chr5	122685801	rs485847	G	A	9190.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:0,337:1.00:337
chr5	122685906	rs35423173	CT	C	239.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.056;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=1.301;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.06;ReadPosRankSum=-3.029;SOR=0.957;set=HC	GT:AD:AF:DP	0/1:37,22:0.37:59
chr5	122714134	.	TA	T	432.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.266;ClippingRankSum=0.000;DP=218;ExcessHet=3.0103;FS=1.708;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.09;ReadPosRankSum=-1.451;SOR=0.507;set=HC	GT:AD:AF:DP	0/1:85,55:0.39:140
chr5	122718736	rs6595440	G	C	1269.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:61,58:0.49:119
chr5	122727026	rs6876883	G	A	2295.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:124,113:0.48:237
chr5	122728913	rs35574017	C	T	936.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:47,39:0.45:86
chr5	122734724	rs11419318	T	TA	248.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.927;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=2.464;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.29;ReadPosRankSum=0.864;SOR=0.199;set=HC	GT:AD:AF:DP	0/1:27,20:0.43:47
chr5	122739421	rs7715577	G	C	2114.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:89,101:0.53:190
chr5	122754293	rs71574108	GTT	G	464.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.202;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.38;ReadPosRankSum=-0.607;SOR=0.525;set=HC	GT:AD:AF:DP	0/1:39,24:0.38:63
chr5	122758268	rs6882791	G	C	7332.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr5	123966143	.	AGTGTGTGTGT	A,AGT	2058.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=109;set=Intersection	GT:AF:DP	1/2:0.58,0.40:60
chr5	123973735	rs12655148	C	G	3246.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr5	123974608	rs4371750	T	C	3546.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr5	123974673	rs62370761	T	C	2062.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr5	123983915	rs6862252	G	T	7827.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr5	123984763	rs7708070	C	T	16748.77	.	AC=2;AF=1.00;AN=2;DB;DP=619;set=Intersection	GT:AD:AF:DP	1/1:0,613:1.00:613
chr5	123985484	rs11422549	C	CA	1813.73	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr5	125696140	rs11241887	G	A	5773.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr5	125759408	rs112623524	C	G	3418.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.776;ClippingRankSum=0.000;DB;DP=370;ExcessHet=3.0103;FS=0.788;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=-0.978;QD=9.34;ReadPosRankSum=-0.429;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:186,180:0.49:366
chr5	125759524	rs34490811	A	ACT	1906.73	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:76,63:0.45:139
chr5	125802122	rs111776730	CT	C	171.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.043;ClippingRankSum=0.000;DB;DP=221;ExcessHet=3.0103;FS=2.247;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=2.550;QD=1.06;ReadPosRankSum=0.385;SOR=0.378;set=HC	GT:AD:AF:DP	0/1:126,36:0.22:162
chr5	125819333	.	T	TA	64.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.145;ClippingRankSum=0.000;DP=106;ExcessHet=3.0103;FS=3.344;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.80;ReadPosRankSum=-0.114;SOR=0.246;set=HC	GT:AD:AF:DP	0/1:65,16:0.20:81
chr5	125880589	rs2775	T	C	600.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr5	125885803	rs1038380	T	G	444.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:11,18:0.62:29
chr5	125887856	rs2306619	A	G	1693.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:99,82:0.45:181
chr5	125890269	rs57637772	G	A	464.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:16,19:0.54:35
chr5	125895126	.	G	GT	240.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.438;ClippingRankSum=0.000;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.08;ReadPosRankSum=-0.778;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:32,27:0.46:59
chr5	125896918	rs4836276	C	A	434.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:13,16:0.55:29
chr5	125919529	.	C	CA	82.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.291;ClippingRankSum=0.000;DP=62;ExcessHet=3.0103;FS=1.158;MLEAC=1;MLEAF=0.500;MQ=59.29;MQRankSum=0.824;QD=1.40;ReadPosRankSum=0.071;SOR=0.924;set=HC	GT:AD:AF:DP	0/1:45,14:0.24:59
chr5	125929000	rs146736809	A	AAC	169.73	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:15,11:0.42:26
chr5	125944219	rs112502491	G	GTGTTTT	4350.73	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr5	126140522	rs3749830	T	C	3475.77	.	AC=1;AF=0.500;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	0/1:179,168:0.48:347
chr5	126145771	rs2271354	A	G	1286.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr5	126156531	rs34618438	GT	G	105.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.815;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=3.404;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.06;ReadPosRankSum=-0.056;SOR=1.126;set=HC	GT:AD:AF:DP	0/1:76,24:0.24:100
chr5	126156538	rs6867254	T	G	1566.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:43,67:0.61:110
chr5	126168319	rs146905904	AG	A	5196.73	.	AC=1;AF=0.500;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	0/1:265,208:0.44:473
chr5	126168563	rs5871235	TG	T	459.73	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:23,18:0.44:41
chr5	126171974	rs2230151	C	T	1228.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:65,58:0.47:123
chr5	126171999	rs1051643	T	C	2709.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr5	126206298	rs3841140	TCAAA	T	1342.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:23,35:0.60:58
chr5	126206303	rs34150806	C	T	432.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:37,22:0.37:59
chr5	126213764	rs3812061	G	T	797.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:31,33:0.52:64
chr5	126250459	.	A	AAC	968.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.529;ClippingRankSum=0.000;DP=119;ExcessHet=3.0103;FS=1.190;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=0.000;QD=14.46;ReadPosRankSum=0.452;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:31,36:0.54:67
chr5	126253538	rs36120055	CT	C	295.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.335;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=1.529;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.48;ReadPosRankSum=1.025;SOR=1.101;set=HC	GT:AD:AF:DP	0/1:22,32:0.59:54
chr5	126387682	rs78618698	G	A	2916.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:141,140:0.50:281
chr5	126387694	rs2240800	A	G	2865.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:123,131:0.52:254
chr5	126387734	rs73339251	A	G	1520.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:84,72:0.46:156
chr5	126394484	rs17165251	C	T	350.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:22,17:0.44:39
chr5	126746277	rs31483	C	T	3284.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr5	126792974	rs3812052	T	A	11064.77	.	AC=2;AF=1.00;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	1/1:0,392:1.00:392
chr5	126993249	rs45074	G	C	2815.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:115,127:0.52:242
chr5	126993263	rs248709	A	T	3195.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:139,150:0.52:289
chr5	127469859	rs2228112	A	G	625.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:32,31:0.49:63
chr5	127477418	rs3805607	T	C	975.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:27,39:0.59:66
chr5	127485599	rs2617618	C	T	1275.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr5	127493679	rs17164310	A	G	1129.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:51,45:0.47:96
chr5	127507316	rs3214907	A	AT	705.73	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:43,47:0.52:90
chr5	127512873	rs1559263	A	C	1310.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:52,63:0.55:115
chr5	127514436	rs17764954	A	T	1021.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:54,49:0.48:103
chr5	127522153	rs11382084	G	GT	1276.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=2.070;QD=6.98;ReadPosRankSum=0.596;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:87,96:0.52:183
chr5	127671623	rs75170825	G	A	728.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:33,32:0.49:65
chr5	127697589	rs10519991	A	G	2290.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:114,106:0.48:220
chr5	127777997	rs13180243	G	A	4920.77	.	AC=1;AF=0.500;AN=2;DB;DP=495;set=Intersection	GT:AD:AF:DP	0/1:245,243:0.50:488
chr5	127855152	rs140146961	GTTAAA	G	4390.73	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:139,119:0.46:258
chr5	128301824	rs2526246	T	A	374.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:37,19:0.34:56
chr5	128301885	rs2526247	T	G	1063.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:93,57:0.38:150
chr5	128301971	rs2577541	T	C	3932.77	.	AC=1;AF=0.500;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	0/1:228,199:0.47:427
chr5	128302368	rs147696009	CCT	C	606.73	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:71,47:0.40:118
chr5	128351881	rs75602878	C	T	371.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:15,16:0.52:31
chr5	128359247	rs31271	T	C	951.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr5	128359297	rs200096085	A	AT	583.73	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:40,41:0.51:81
chr5	128362773	.	G	A	1371.77	.	AC=1;AF=0.500;AN=2;DP=164;set=Intersection	GT:AD:AF:DP	0/1:88,71:0.45:159
chr5	128430757	rs1127827	T	C	1884.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:84,75:0.47:159
chr5	128732672	rs13171514	A	G	879.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:37,45:0.55:82
chr5	128863471	rs6595908	A	G	1954.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr5	128977732	rs17163231	A	G	1655.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:89,75:0.46:164
chr5	128990138	.	C	CA	270.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.327;ClippingRankSum=0.000;DP=421;ExcessHet=3.0103;FS=2.514;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=2.189;QD=0.73;ReadPosRankSum=-0.977;SOR=0.590;set=HC	GT:AD:AF:DP	0/1:306,65:0.18:371
chr5	128994492	rs17839592	A	T	999.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:32,42:0.57:74
chr5	129015452	rs30645	T	C	1101.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:42,49:0.54:91
chr5	129015668	rs246443	T	C	327.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:38,16:0.30:54
chr5	129072943	rs1465686	G	T	1168.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:51,55:0.52:106
chr5	129100561	rs72792876	T	C	1381.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:86,69:0.45:155
chr5	129240465	rs2436347	G	T	279.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:7,14:0.67:21
chr5	129240972	rs33917	G	C	2655.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:93,122:0.57:215
chr5	129244122	rs32234	C	T	380.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:20,19:0.49:39
chr5	129244133	rs2431206	A	G	232.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:13,13:0.50:26
chr5	129519874	rs10066410	G	A	1770.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr5	129521126	rs2015018	A	G	14289.77	.	AC=2;AF=1.00;AN=2;DB;DP=510;set=Intersection	GT:AD:AF:DP	1/1:0,505:1.00:505
chr5	130498011	.	CA	C	234.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.550;ClippingRankSum=0.000;DP=127;ExcessHet=3.0103;FS=1.035;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.04;ReadPosRankSum=0.791;SOR=0.498;set=HC	GT:AD:AF:DP	0/1:74,41:0.36:115
chr5	130500751	rs2278060	A	C	5767.77	.	AC=1;AF=0.500;AN=2;DB;DP=514;set=Intersection	GT:AD:AF:DP	0/1:239,272:0.53:511
chr5	130726599	rs147277736	TAAAATTCTGGG	T	2225.73	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:30,56:0.65:86
chr5	130766662	rs1291602	T	C	12475.77	.	AC=2;AF=1.00;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	1/1:0,465:1.00:465
chr5	130776053	rs1422081	C	A	1082.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:50,52:0.51:102
chr5	130788642	rs12656936	A	C	1349.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:84,56:0.40:140
chr5	130788698	rs10054168	C	T	2990.77	.	AC=1;AF=0.500;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	0/1:189,150:0.44:339
chr5	130805475	rs56228197	C	T	909.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:63,46:0.42:109
chr5	130808119	rs182448627	A	G	647.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:24,27:0.53:51
chr5	130808198	rs31241	T	C	1206.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:76,56:0.42:132
chr5	130831365	rs40400	T	C	1384.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:91,69:0.43:160
chr5	130867733	rs1029472	G	A	3057.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr5	130982768	rs26006	A	G	7120.77	.	AC=1;AF=0.500;AN=2;DB;DP=702;set=Intersection	GT:AD:AF:DP	0/1:354,341:0.49:695
chr5	131006082	rs27450	A	G	667.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:32,26:0.45:58
chr5	131006356	rs26007	T	A	1497.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:85,74:0.47:159
chr5	131008194	rs26008	T	C	16191.77	.	AC=2;AF=1.00;AN=2;DB;DP=619;set=Intersection	GT:AD:AF:DP	1/1:0,606:1.00:606
chr5	131008451	rs142391857	G	T	2737.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:166,128:0.44:294
chr5	131044734	rs182553830	A	C	329.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:37,15:0.29:52
chr5	131066577	rs7729787	A	C	1333.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:77,62:0.45:139
chr5	131066725	rs7730228	C	A	6712.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr5	131283376	rs683749	C	T	4369.77	.	AC=1;AF=0.500;AN=2;DB;DP=466;set=Intersection	GT:AD:AF:DP	0/1:245,217:0.47:462
chr5	131283541	rs34365565	GA	G	311.73	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:27,21:0.44:48
chr5	131312238	rs11743803	A	G	544.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.319;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=2.376;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.24;ReadPosRankSum=0.699;SOR=0.948;set=HC	GT:AD:AF:DP	0/1:110,58:0.35:168
chr5	131312327	rs370652	G	T	16957.77	.	AC=2;AF=1.00;AN=2;DB;DP=645;set=Intersection	GT:AD:AF:DP	1/1:0,641:1.00:641
chr5	131320942	rs422291	A	T	2595.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:62,65:0.51:127
chr5	131320959	rs67060241	GT	G	3249.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.264;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=5.837;MLEAC=1;MLEAF=0.500;MQ=65.07;MQRankSum=11.615;QD=20.57;ReadPosRankSum=0.064;SOR=1.136;set=HC	GT:AD:AF:DP	0/1:75,83:0.53:158
chr5	131320960	.	TC	GC	2317	.	AC=1;AF=0.500;AN=2;BRF=0.43;FR=0.5000,0.5000;HP=2;HapScore=4;MGOF=9;MMLQ=28;MQ=64.51;NF=34,17;NR=17,17;PP=2309,2317;QD=45.9562982852;SC=GTGCAGGAGGTCACCCAGTGT;SbPval=0.73;Source=Platypus;TC=111;TCF=69;TCR=42;TR=51,34;WE=131320968;WS=131320950;set=Platypus	GT:AD:AF:DP	0/1:60,51:0.46:111
chr5	131320960	.	TC	T	2317	.	AC=1;AF=0.500;AN=2;BRF=0.43;FR=0.5000,0.5000;HP=2;HapScore=4;MGOF=9;MMLQ=28;MQ=64.51;NF=34,17;NR=17,17;PP=2309,2317;QD=45.9562982852;SC=GTGCAGGAGGTCACCCAGTGT;SbPval=0.73;Source=Platypus;TC=111;TCF=69;TCR=42;TR=51,34;WE=131320968;WS=131320950;set=Platypus	GT:AD:AF:DP	0/1:36,34:0.49:70
chr5	131320961	rs115222986	C	G	3258.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.101;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=5.859;MLEAC=1;MLEAF=0.500;MQ=65.04;MQRankSum=11.512;QD=20.50;ReadPosRankSum=-0.200;SOR=1.162;set=HC	GT:AD:AF:DP	0/1:75,84:0.53:159
chr5	131321159	rs11740791	G	C	1304.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:67,68:0.50:135
chr5	131322494	rs77938	C	T	1768.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:133,93:0.41:226
chr5	131322666	rs67212057	CCACACACTCACA	C	794.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.823;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.75;MQRankSum=1.680;QD=19.38;ReadPosRankSum=-0.664;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:19,22:0.54:41
chr5	131324119	rs71970	T	G	3514.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:129,143:0.53:272
chr5	131324250	rs3043838	C	CTG	5921.73	.	AC=1;AF=0.500;AN=2;DB;DP=704;set=Intersection	GT:AD:AF:DP	0/1:368,287:0.44:655
chr5	131325888	rs422130	A	G	1481.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:86,70:0.45:156
chr5	131326522	rs5871439	AC	A	7258.73	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:5,258:0.98:263
chr5	131330054	rs253944	C	G	618.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:15,23:0.61:38
chr5	131347520	rs4705908	G	A	1658.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:53,71:0.57:124
chr5	131396478	rs40401	C	T	1144.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:65,59:0.48:124
chr5	131411460	rs25882	T	C	5650.77	.	AC=1;AF=0.500;AN=2;DB;DP=515;set=Intersection	GT:AD:AF:DP	0/1:239,268:0.53:507
chr5	131534499	rs3749756	C	T	1285.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:53,56:0.51:109
chr5	131540053	rs159903	C	T	556.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:23,23:0.50:46
chr5	131546280	rs154483	A	G	6864.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr5	131553340	rs2301579	C	A	444.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:35,20:0.36:55
chr5	131553428	rs3214098	T	TA	2705.73	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:98,81:0.45:179
chr5	131553665	rs154485	A	G	1930.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr5	131593336	rs70974026	C	CG	291.74	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.47;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr5	131593363	.	GGCT	G	1528.73	.	AC=2;AF=1.00;AN=2;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.68;SOR=2.115;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr5	131593373	.	GCGGCGGCTC	G	1754.73	.	AC=2;AF=1.00;AN=2;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.87;SOR=2.191;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr5	131602166	rs1007602	T	C	12235.77	.	AC=2;AF=1.00;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	1/1:0,445:1.00:445
chr5	131607300	rs55722650	C	T	15954.77	.	AC=1;AF=0.500;AN=2;DB;DP=1731;set=Intersection	GT:AD:AF:DP	0/1:934,777:0.45:1711
chr5	131607402	rs10479000	T	C	17744.77	.	AC=1;AF=0.500;AN=2;DB;DP=1693;set=Intersection	GT:AD:AF:DP	0/1:836,827:0.50:1663
chr5	131607465	rs200399687	C	T	14909.77	.	AC=1;AF=0.500;AN=2;DB;DP=1545;set=Intersection	GT:AD:AF:DP	0/1:798,739:0.48:1537
chr5	131630852	rs35260072	A	C	3265.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:111,144:0.56:255
chr5	131649186	rs270607	A	G	753.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr5	131658085	rs270600	T	C	5562.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr5	131660119	rs273915	G	C	541.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	131660431	rs273914	A	T	601.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr5	131663062	rs272893	T	C	10924.77	.	AC=2;AF=1.00;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	1/1:0,401:1.00:401
chr5	131670546	rs272879	C	G	4884.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr5	131671769	rs272878	T	C	1057.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr5	131676320	rs1050152	C	T	4304.77	.	AC=1;AF=0.500;AN=2;DB;DP=451;set=Intersection	GT:AD:AF:DP	0/1:238,208:0.47:446
chr5	131701279	rs367805	T	C	5843.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr5	131719696	rs78399358	C	G	1627.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:104,85:0.45:189
chr5	131719999	rs4551059	A	G	5840.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr5	131730052	rs60522531	CA	C	2273.73	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:93,101:0.52:194
chr5	131755477	rs4451042	G	T	1002.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr5	131792639	rs3214157	A	AT	3313.73	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:10,154:0.94:164
chr5	131796498	rs2522048	T	C	14514.77	.	AC=2;AF=1.00;AN=2;DB;DP=543;set=Intersection	GT:AD:AF:DP	1/1:0,538:1.00:538
chr5	131796573	rs2522049	T	C	7983.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr5	131819921	rs2070729	C	A	960.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:66,45:0.41:111
chr5	131821520	rs142244361	G	GAC	843.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:5,30:0.86:35
chr5	131892357	rs2706335	C	T	13736.77	.	AC=2;AF=1.00;AN=2;DB;DP=516;set=Intersection	GT:AD:AF:DP	1/1:0,513:1.00:513
chr5	131892979	rs4526098	G	A	9966.77	.	AC=2;AF=1.00;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	1/1:0,359:1.00:359
chr5	131915213	rs17166050	G	A	539.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:21,22:0.51:43
chr5	131973663	rs2074369	T	C	367.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:18,16:0.47:34
chr5	131995843	rs1295686	T	C	1797.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:110,84:0.43:194
chr5	131995964	rs20541	A	G	4525.77	.	AC=1;AF=0.500;AN=2;DB;DP=541;set=Intersection	GT:AD:AF:DP	0/1:299,234:0.44:533
chr5	132035252	.	C	CT	211.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.200;ClippingRankSum=0.000;DP=128;ExcessHet=3.0103;FS=0.985;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=-1.301;QD=2.46;ReadPosRankSum=0.968;SOR=0.957;set=HC	GT:AD:AF:DP	0/1:60,26:0.30:86
chr5	132036252	rs1468216	T	C	13367.77	.	AC=2;AF=1.00;AN=2;DB;DP=512;set=Intersection	GT:AD:AF:DP	1/1:0,505:1.00:505
chr5	132036489	rs1468215	A	T	1079.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr5	132038199	rs3213639	C	T	7786.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr5	132039132	rs2285700	C	A	2419.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr5	132046789	rs11740584	G	C	10770.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:0,371:1.00:371
chr5	132056147	rs2074529	C	A	5766.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr5	132070242	rs7732520	C	T	539.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr5	132098242	rs30510	A	G	13198.77	.	AC=2;AF=1.00;AN=2;DB;DP=506;set=Intersection	GT:AD:AF:DP	1/1:0,501:1.00:501
chr5	132149322	.	G	GGCCGCCGCC	1118.73	.	AC=1;AF=0.500;AN=2;DP=61;set=Intersection	GT:AD:AF:DP	0/1:30,24:0.44:54
chr5	132149684	rs40274	G	C	9186.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chr5	132150024	rs4266393	C	G	944.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:23,37:0.62:60
chr5	132150132	rs115553646	C	A	376.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:21,21:0.50:42
chr5	132150948	rs40470	T	G	14731.77	.	AC=2;AF=1.00;AN=2;DB;DP=536;set=Intersection	GT:AD:AF:DP	1/1:0,534:1.00:534
chr5	132151071	rs757537	A	G	1290.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:42,53:0.56:95
chr5	132159134	rs4705870	C	T	4701.77	.	AC=1;AF=0.500;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	0/1:195,213:0.52:408
chr5	132159520	rs66542366	T	A	6153.77	.	AC=1;AF=0.500;AN=2;DB;DP=542;set=Intersection	GT:AD:AF:DP	0/1:250,288:0.54:538
chr5	132160057	rs35534543	C	T	4884.77	.	AC=1;AF=0.500;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	0/1:200,223:0.53:423
chr5	132161294	rs2292030	G	A	1426.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:78,61:0.44:139
chr5	132198199	rs254286	G	A	4237.77	.	AC=1;AF=0.500;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	0/1:206,192:0.48:398
chr5	132198287	rs254285	C	G	2889.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr5	132203057	rs79323607	G	T	489.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:43,26:0.38:69
chr5	132209164	rs142228782	ATCAC	A	1718.73	.	AC=1;AF=0.500;AN=2;DB;DP=94;MQ=60.23;set=Intersection	GT:AD:AF:DP	0/1:45,46:0.51:91
chr5	132220941	rs3835017	CGTGTGTGT	CGT,C	1400.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=47;set=Intersection	GT:AF:DP	1/1:1.00:34
chr5	132227677	rs6596093	A	G	2392.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr5	132232315	rs739863	G	A	3298.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:150,147:0.49:297
chr5	132234152	rs34099243	C	CG	1231.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr5	132234182	rs34333760	CT	C	76.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.551;ClippingRankSum=-0.000;DB;DP=18;ExcessHet=3.0103;FS=2.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.80;ReadPosRankSum=-2.850;SOR=2.179;set=HC	GT:AD:AF:DP	0/1:7,9:0.56:16
chr5	132234702	rs66732439	A	G	3234.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:159,151:0.49:310
chr5	132239920	.	G	GA	167.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.183;ClippingRankSum=0.000;DP=73;ExcessHet=3.0103;FS=1.012;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=2.208;QD=2.50;ReadPosRankSum=-0.247;SOR=0.869;set=HC	GT:AD:AF:DP	0/1:47,20:0.30:67
chr5	132239939	rs12513758	C	G	632.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.366;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=4.391;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=-1.099;QD=7.53;ReadPosRankSum=-0.977;SOR=1.252;set=HC	GT:AD:AF:DP	0/1:52,32:0.38:84
chr5	132240151	rs12517073	T	C	455.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:18,22:0.55:40
chr5	132267850	rs56817345	A	AT	361.73	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:30,24:0.44:54
chr5	132267859	rs56157864	A	T	926.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:31,27:0.47:58
chr5	132334252	rs3087646	A	G	2642.77	.	AC=1;AF=0.500;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	0/1:177,140:0.44:317
chr5	132335951	rs2059783	A	G	5225.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.617;ClippingRankSum=0.000;DB;DP=473;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.43;ReadPosRankSum=-1.846;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:208,249:0.54:457
chr5	132362336	.	A	AG	636	.	AC=1;AF=0.500;AN=2;BRF=0.35;FR=0.5000;HP=4;HapScore=2;MGOF=10;MMLQ=28;MQ=58.38;NF=0;NR=16;PP=636;QD=41.875;SC=CAGGCTTCTAAGGGGAGGTAT;SbPval=1.0;Source=Platypus;TC=38;TCF=1;TCR=37;TR=16;WE=132362344;WS=132362326;set=Platypus	GT:AD:AF:DP	0/1:22,16:0.42:38
chr5	132408905	.	C	CT	39.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.410;ClippingRankSum=0.000;DP=270;ExcessHet=3.0103;FS=1.441;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.15;ReadPosRankSum=1.710;SOR=0.823;set=HC	GT:AD:AF:DP	0/1:223,38:0.15:261
chr5	132425415	.	GA	G	278.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.509;ClippingRankSum=0.000;DP=256;ExcessHet=3.0103;FS=1.406;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=3.422;QD=1.30;ReadPosRankSum=1.226;SOR=0.823;set=HC	GT:AD:AF:DP	0/1:162,52:0.24:214
chr5	132535046	rs3749817	G	A	5445.77	.	AC=1;AF=0.500;AN=2;DB;DP=521;set=Intersection	GT:AD:AF:DP	0/1:261,255:0.49:516
chr5	132561277	rs2241583	G	A	2091.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:70,94:0.57:164
chr5	132569260	rs35758896	GCCT	G	5460.73	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:95,139:0.59:234
chr5	132918828	rs13162005	C	T	1445.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.12;SOR=3.352;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr5	132939412	rs72789144	C	T	537.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:15,22:0.59:37
chr5	133316325	rs55708320	T	TA	447.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.465;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=8.012;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=0.000;QD=4.87;ReadPosRankSum=0.994;SOR=0.167;set=HC	GT:AD:AF:DP	0/1:48,44:0.48:92
chr5	133450497	rs173424	A	G	104.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.98;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr5	133451683	rs5742913	C	A	10285.77	.	AC=1;AF=0.500;AN=2;DB;DP=991;set=Intersection	GT:AD:AF:DP	0/1:476,509:0.52:985
chr5	133459573	rs17167274	A	G	1598.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:59,78:0.57:137
chr5	133537438	rs2302598	T	A	3280.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr5	133537479	rs2302599	T	G	5300.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:2,206:0.99:208
chr5	133541548	rs2239543	A	G	1008.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:1,48:0.98:49
chr5	133561589	rs3863186	G	C	17871.77	.	AC=2;AF=1.00;AN=2;DB;DP=659;set=Intersection	GT:AD:AF:DP	1/1:0,655:1.00:655
chr5	133638034	rs17165388	C	A	1186.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:58,48:0.45:106
chr5	133644216	rs374947655	C	A	2126.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:88,97:0.52:185
chr5	133655029	.	G	GA	154.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.604;ClippingRankSum=0.000;DP=124;ExcessHet=3.0103;FS=2.531;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.46;ReadPosRankSum=-0.141;SOR=1.215;set=HC	GT:AD:AF:DP	0/1:80,26:0.25:106
chr5	133657610	rs139337657	G	GA	7446.73	.	AC=2;AF=1.00;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	1/1:12,333:0.97:345
chr5	133738583	.	G	T	900.77	.	AC=1;AF=0.500;AN=2;DP=67;set=Intersection	GT:AD:AF:DP	0/1:23,41:0.64:64
chr5	133873572	rs329126	A	C	4447.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.069;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=1.159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.98;ReadPosRankSum=1.192;SOR=0.798;set=HC	GT:AD:AF:DP	0/1:99,113:0.53:212
chr5	133873577	rs2304082	C	T	4585.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.464;ClippingRankSum=0.000;DB;DP=235;ExcessHet=3.0103;FS=0.523;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.85;ReadPosRankSum=0.451;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:107,124:0.54:231
chr5	133896744	rs2589404	A	G	1878.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr5	133897829	rs329304	C	T	4593.77	.	AC=1;AF=0.500;AN=2;DB;DP=451;set=Intersection	GT:AD:AF:DP	0/1:220,223:0.50:443
chr5	133898136	rs10056247	C	T	947.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:30,40:0.57:70
chr5	133900111	rs329311	A	C	7742.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr5	133902288	rs2044318	C	T	981.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:39,46:0.54:85
chr5	133909475	rs329322	G	A	4362.77	.	AC=1;AF=0.500;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	0/1:219,215:0.50:434
chr5	133944043	rs201249311	AT	A	392.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.755;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=0.747;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.619;QD=2.28;ReadPosRankSum=0.251;SOR=0.843;set=HC	GT:AD:AF:DP	0/1:111,61:0.35:172
chr5	133984645	rs61421945	CT	C	3247.73	.	AC=1;AF=0.500;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	0/1:213,171:0.45:384
chr5	134011834	.	C	CT	471.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.497;ClippingRankSum=0.000;DP=334;ExcessHet=3.0103;FS=2.312;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=0.000;QD=1.93;ReadPosRankSum=-0.822;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:183,62:0.25:245
chr5	134015495	.	T	TA	82.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.632;ClippingRankSum=0.000;DP=111;ExcessHet=3.0103;FS=7.566;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.98;ReadPosRankSum=0.891;SOR=0.144;set=HC	GT:AD:AF:DP	0/1:68,16:0.19:84
chr5	134015523	rs10042142	C	G	1820.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr5	134033777	rs246341	G	A	4004.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr5	134039742	rs151247213	TTTTA	T	335.73	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:2,9:0.82:11
chr5	134094512	rs112871312	T	G	1510.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:58,70:0.55:128
chr5	134106506	rs34760153	C	CA	55.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.463;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.34;MQRankSum=1.198;QD=3.98;ReadPosRankSum=-1.002;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:7,7:0.50:14
chr5	134109602	rs2059803	A	G	527.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:13,20:0.61:33
chr5	134113558	rs254713	G	A	500.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr5	134126198	rs34125601	T	C	703.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:43,37:0.46:80
chr5	134164284	rs34675300	GT	G	908.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.105;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=2.711;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.80;ReadPosRankSum=0.537;SOR=1.297;set=HC	GT:AD:AF:DP	0/1:16,61:0.79:77
chr5	134305852	.	A	AT	524.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.883;ClippingRankSum=0.000;DP=158;ExcessHet=3.0103;FS=4.472;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.077;QD=4.90;ReadPosRankSum=-0.481;SOR=1.262;set=HC	GT:AD:AF:DP	0/1:63,44:0.41:107
chr5	134331822	rs299363	G	A	2328.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr5	134331921	rs299364	T	G	9953.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:0,360:1.00:360
chr5	134343799	rs177252	A	G	7551.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:2,288:0.99:290
chr5	134344497	rs299376	T	C	4480.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:2,162:0.99:164
chr5	134344902	rs299377	T	C	1884.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr5	134344929	rs299378	C	G	2948.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr5	134346304	rs877812	G	A	1421.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr5	134364406	rs71660434	TCCGCGC	T	913.73	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:20,25:0.56:45
chr5	134364415	rs1131614	G	A	551.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.857;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.42;MQRankSum=-1.373;QD=10.82;ReadPosRankSum=-0.886;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:26,25:0.49:51
chr5	134364518	rs479632	C	G	3895.77	.	AC=1;AF=0.500;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	0/1:166,181:0.52:347
chr5	134365091	rs474853	T	C	1621.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:41,60:0.59:101
chr5	134368721	rs10716861	CA	C	845.73	.	AC=1;AF=0.500;AN=2;DB;DP=119;MQ=60.18;set=Intersection	GT:AD:AF:DP	0/1:50,50:0.50:100
chr5	134573448	rs62383169	G	A	4170.77	.	AC=1;AF=0.500;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	0/1:176,194:0.52:370
chr5	134686679	rs190560715	A	G	2156.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:141,107:0.43:248
chr5	134782087	rs139885262	T	C	951.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:71,46:0.39:117
chr5	134907642	rs370520506	G	A	1807.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:105,90:0.46:195
chr5	134986006	rs801560	G	A	510.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:42,28:0.40:70
chr5	134986256	rs149152270	A	AAAC	3303.73	.	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.33;QD=38.42;SOR=1.073;set=HC	GT:AD:AF:DP	1/1:3,83:0.97:86
chr5	135215835	.	CT	C	324.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.183;ClippingRankSum=0.000;DP=253;ExcessHet=3.0103;FS=7.389;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.555;QD=1.69;ReadPosRankSum=-0.236;SOR=0.291;set=HC	GT:AD:AF:DP	0/1:140,52:0.27:192
chr5	135223713	rs9327734	G	T	9595.77	.	AC=2;AF=1.00;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	1/1:0,362:1.00:362
chr5	135228165	rs2069885	G	A	3134.77	.	AC=1;AF=0.500;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	0/1:183,161:0.47:344
chr5	135229633	rs2069882	T	C	1582.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr5	135257940	rs2051699	A	G	248.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:18,12:0.40:30
chr5	135258105	rs39604	G	A	1752.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:60,83:0.58:143
chr5	135276201	rs1160982	AGTT	A	5547.73	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:2,208:0.99:210
chr5	135276314	rs40986	C	T	9192.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	1/1:0,347:1.00:347
chr5	135276701	rs31548	T	C	6730.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr5	135276847	rs31547	T	C	8457.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr5	135277394	rs11376205	G	GT	1845.73	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr5	135287029	rs31517	T	C	4316.77	.	AC=1;AF=0.500;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	0/1:210,216:0.51:426
chr5	135365006	rs4976361	A	G	669.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr5	135379612	rs4976464	A	G	2639.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr5	135382989	rs1442	G	C	3696.77	.	AC=1;AF=0.500;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	0/1:170,175:0.51:345
chr5	135385316	rs17169753	T	C	3477.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:177,152:0.46:329
chr5	135388663	rs1054124	A	G	6737.77	.	AC=1;AF=0.500;AN=2;DB;DP=636;set=Intersection	GT:AD:AF:DP	0/1:312,318:0.50:630
chr5	135391326	rs6860369	A	G	3821.77	.	AC=1;AF=0.500;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	0/1:171,178:0.51:349
chr5	135391374	rs1133170	C	T	3321.77	.	AC=1;AF=0.500;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	0/1:183,165:0.47:348
chr5	135392426	rs4669	T	C	1776.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:128,91:0.42:219
chr5	135392507	rs2072239	G	A	1611.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:104,82:0.44:186
chr5	135396452	rs13168506	A	G	391.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:17,18:0.51:35
chr5	135396468	rs13188659	T	A	349.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.495;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=1.230;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.53;ReadPosRankSum=0.257;SOR=0.948;set=HC	GT:AD:AF:DP	0/1:24,17:0.41:41
chr5	135396669	rs6880837	T	C	1129.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:43,49:0.53:92
chr5	135469726	.	TGG	T	39.75	.	AC=1;AF=0.500;AN=2;DP=26;set=Intersection	GT:AD:AF:DP	0/1:1,3:0.75:4
chr5	135496820	.	CA	C	105.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.201;ClippingRankSum=0.000;DP=246;ExcessHet=3.0103;FS=6.882;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=3.945;QD=0.51;ReadPosRankSum=0.784;SOR=1.371;set=HC	GT:AD:AF:DP	0/1:168,39:0.19:207
chr5	135513085	rs55765823	T	TC	9692.73	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr5	135551997	rs147290355	G	A	2093.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:138,108:0.44:246
chr5	135561133	rs3734123	C	T	2257.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:112,108:0.49:220
chr5	135700760	rs11307237	GA	G	230.73	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:21,18:0.46:39
chr5	135700900	rs11404834	G	GA	2160.73	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:157,131:0.45:288
chr5	136315200	rs3217011	AT	A	11544.73	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr5	136315221	rs13158661	C	T	2403.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:123,111:0.47:234
chr5	136328367	rs3777224	C	T	386.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:21,18:0.46:39
chr5	136833955	rs372446202	CCA	C	124.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.668;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=5.474;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=2.481;QD=1.15;ReadPosRankSum=-1.322;SOR=1.739;set=HC	GT:AD:AF:DP	0/1:90,18:0.17:108
chr5	136969637	rs7713180	A	G	3017.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr5	136969953	rs2301709	C	T	504.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr5	136975687	rs2074348	G	A	9842.77	.	AC=2;AF=1.00;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	1/1:0,374:1.00:374
chr5	136975819	rs4370266	A	G	1926.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr5	136997776	rs70979550	AC	A	7303.73	.	AC=2;AF=1.00;AN=2;DB;DP=232;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.14;QD=34.95;SOR=0.803;set=HC	GT:AD:AF:DP	1/1:0,209:1.00:209
chr5	136997803	.	A	AAAAG	1758.73	.	AC=1;AF=0.500;AN=2;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=20.22;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:21,66:0.76:87
chr5	137013106	rs2967791	C	T	3557.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr5	137027953	rs2301710	A	T	1849.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr5	137028029	rs2905608	T	C	3568.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr5	137055989	.	C	CA	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.099;ClippingRankSum=0.000;DP=63;ExcessHet=3.0103;FS=10.365;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.62;ReadPosRankSum=0.965;SOR=3.134;set=HC	GT:AD:AF:DP	0/1:45,13:0.22:58
chr5	137056027	rs6887727	T	C	3805.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.40;SOR=1.523;set=HC	GT:AD:AF:DP	1/1:0,134:1.00:134
chr5	137144441	rs2228647	G	A	12593.77	.	AC=1;AF=0.500;AN=2;DB;DP=1412;set=Intersection	GT:AD:AF:DP	0/1:768,629:0.45:1397
chr5	137206560	rs6890689	A	C	18137.77	.	AC=2;AF=1.00;AN=2;DB;DP=660;set=Intersection	GT:AD:AF:DP	1/1:1,652:1.00:653
chr5	137241856	rs700605	T	C	4411.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr5	137244517	rs1880458	G	A	4768.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr5	137257288	rs4304074	A	G	1490.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr5	137259179	rs12187140	T	C	2841.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr5	137259251	rs13188503	C	T	2039.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr5	137259335	rs34615501	C	G	295.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:19,14:0.42:33
chr5	137271968	rs7701617	T	G	1473.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr5	137272149	.	C	CT	98.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.079;ClippingRankSum=0.000;DP=92;ExcessHet=3.0103;FS=3.067;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.54;ReadPosRankSum=-0.168;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:46,18:0.28:64
chr5	137281708	rs1125979	A	C	7912.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr5	137282031	rs200574712	C	CA	67.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.485;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=3.055;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.17;ReadPosRankSum=0.175;SOR=0.277;set=HC	GT:AD:AF:DP	0/1:46,12:0.21:58
chr5	137292095	rs3777115	G	A	2453.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:117,115:0.50:232
chr5	137292133	rs3836896	C	CA	9786.73	.	AC=2;AF=1.00;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	1/1:4,389:0.99:393
chr5	137295823	rs9327802	T	C	1297.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr5	137297923	rs4835738	C	T	791.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr5	137323117	rs7714536	A	G	1636.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr5	137342576	rs76367853	A	G	593.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:44,30:0.41:74
chr5	137342589	rs3756686	T	C	842.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:53,36:0.40:89
chr5	137347403	rs12187885	G	A	3176.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr5	137347498	rs10064910	G	A	4883.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr5	137354851	rs66908638	CA	C	924.73	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:2,48:0.96:50
chr5	137372207	rs6596419	A	T	13676.77	.	AC=2;AF=1.00;AN=2;DB;DP=536;set=Intersection	GT:AD:AF:DP	1/1:0,521:1.00:521
chr5	137420376	rs4835762	T	C	4206.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr5	137423338	rs66902804	CAA	C	69.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.81;ReadPosRankSum=-0.000;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:6,6:0.50:12
chr5	137426447	rs6596422	G	A	4513.77	.	AC=1;AF=0.500;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	0/1:194,202:0.51:396
chr5	137426768	rs12520886	C	T	454.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:43,23:0.35:66
chr5	137427274	rs3860103	G	C	619.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:24,28:0.54:52
chr5	137451460	.	G	GA	175.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.156;ClippingRankSum=0.000;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=2.841;QD=1.33;ReadPosRankSum=1.428;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:102,30:0.23:132
chr5	137454358	rs6878575	C	G	1151.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr5	137464826	rs217275	A	C	928.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.628;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=2.062;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.72;ReadPosRankSum=-0.494;SOR=1.007;set=HC	GT:AD:AF:DP	0/1:33,40:0.55:73
chr5	137464887	rs11428296	A	AT	2206.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.425;ClippingRankSum=0.000;DB;DP=332;ExcessHet=3.0103;FS=2.635;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=0.000;QD=6.90;ReadPosRankSum=-1.681;SOR=0.539;set=HC	GT:AD:AF:DP	0/1:168,152:0.47:320
chr5	137475787	rs423258	C	T	3542.77	.	AC=1;AF=0.500;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	0/1:205,174:0.46:379
chr5	137476416	rs412051	T	C	12169.77	.	AC=2;AF=1.00;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	1/1:0,445:1.00:445
chr5	137485292	rs217270	C	T	891.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr5	137486426	rs217272	T	C	2100.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:123,105:0.46:228
chr5	137501396	rs2269957	A	C	205.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:10,10:0.50:20
chr5	137506434	rs13155519	G	A	1167.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:93,60:0.39:153
chr5	137506890	rs142511886	A	G	3288.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:137,157:0.53:294
chr5	137507104	rs200476181	TAA	T,TA	2811.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.641;ClippingRankSum=0.000;DB;DP=333;ExcessHet=3.0103;FS=2.960;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.07;MQRankSum=0.652;QD=10.34;ReadPosRankSum=0.460;SOR=0.942;set=HC	GT:AD:AF:DP	1/2:53,68,151:0.25,0.56:272
chr5	137513369	rs10671440	G	GAA	1538.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.189;ClippingRankSum=0.000;DB;DP=303;ExcessHet=3.0103;FS=0.612;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.445;QD=6.33;ReadPosRankSum=-0.573;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:138,105:0.43:243
chr5	137524951	.	G	GT	32.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.328;ClippingRankSum=0.000;DP=108;ExcessHet=3.0103;FS=2.671;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=2.777;QD=0.41;ReadPosRankSum=-1.797;SOR=0.346;set=HC	GT:AD:AF:DP	0/1:64,15:0.19:79
chr5	137661434	rs3734165	T	C	945.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:50,42:0.46:92
chr5	137665323	rs3734166	G	A	3306.77	.	AC=1;AF=0.500;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	0/1:191,166:0.46:357
chr5	137665462	rs3734167	C	G	231.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:3,9:0.75:12
chr5	137682312	rs138126056	C	CA	582.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.049;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.95;ReadPosRankSum=0.322;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:53,45:0.46:98
chr5	137682714	rs2269953	T	G	290.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.444;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.03;ReadPosRankSum=-0.650;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:15,14:0.48:29
chr5	137688497	rs200772506	G	A	678.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:23,33:0.59:56
chr5	137708434	rs4835678	C	T	8118.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr5	137710013	rs12522867	T	G	1222.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:48,57:0.54:105
chr5	137717213	rs10073922	G	A	1930.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:82,93:0.53:175
chr5	137717265	rs6865472	G	A	5658.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr5	137729134	rs77999870	C	CT	2156.73	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:88,74:0.46:162
chr5	137735754	rs4835680	A	T	1872.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr5	137754695	rs7726234	T	C	8222.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr5	137760083	rs740077	A	C	354.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:13,13:0.50:26
chr5	137763615	rs2240334	A	C	732.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:23,29:0.56:52
chr5	137763798	rs17599026	C	T	3021.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:132,145:0.52:277
chr5	137775081	rs1859466	C	T	107.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:10,6:0.38:16
chr5	137775581	rs982085	C	G	5294.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr5	137776931	rs2269947	C	T	1237.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:50,51:0.50:101
chr5	137777269	rs12516269	A	G	2837.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:136,139:0.51:275
chr5	137780336	rs4835794	T	C	8113.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr5	137780368	rs2240331	C	A	10708.77	.	AC=2;AF=1.00;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	1/1:0,373:1.00:373
chr5	137780631	rs2240330	C	T	1179.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:37,48:0.56:85
chr5	137844274	rs2242599	A	G	484.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:21,23:0.52:44
chr5	137846155	rs4835685	A	G	11414.77	.	AC=2;AF=1.00;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	1/1:0,433:1.00:433
chr5	137847082	rs35404194	C	T	1997.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.43;SOR=0.780;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr5	137847084	.	CACACACAT	C	98.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.393;ClippingRankSum=0.000;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.60;ReadPosRankSum=-0.074;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:30,8:0.21:38
chr5	137847086	rs137924468	CACACAT	C	291.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:21,15:0.42:36
chr5	137847092	rs11738208	T	C	417.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.421;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.60;ReadPosRankSum=0.626;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:23,13:0.36:36
chr5	137849526	rs10077407	C	T	1123.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:53,54:0.50:107
chr5	137892170	rs10117	G	A	2139.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:106,106:0.50:212
chr5	137896597	rs10652442	A	AT	591.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.607;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=3.908;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.89;ReadPosRankSum=-0.387;SOR=1.151;set=HC	GT:AD:AF:DP	0/1:74,47:0.39:121
chr5	137897589	rs256007	A	C	674.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:24,27:0.53:51
chr5	137902339	rs1042665	T	C	6465.77	.	AC=1;AF=0.500;AN=2;DB;DP=536;set=Intersection	GT:AD:AF:DP	0/1:235,295:0.56:530
chr5	137902868	rs71574426	GA	G	394.73	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:15,26:0.63:41
chr5	137909674	rs41294566	GAGA	G	1665.73	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:25,43:0.63:68
chr5	138117938	rs700626	A	G	7274.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr5	138216625	rs5871683	G	GA	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.896;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.55;ReadPosRankSum=-0.191;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:62,12:0.16:74
chr5	138456815	rs3088052	T	C	2112.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:106,108:0.50:214
chr5	138463538	rs11555154	G	C	1488.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:89,76:0.46:165
chr5	138473077	rs11431215	C	CA	6298.73	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:2,217:0.99:219
chr5	138642997	rs112107315	A	AT	379.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:23,19:0.45:42
chr5	138643062	rs12153162	T	A	3534.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.093;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.12;MQRankSum=0.381;QD=19.86;ReadPosRankSum=1.007;SOR=0.751;set=HC	GT:AD:AF:DP	1/1:11,167:0.94:178
chr5	138651505	.	AAAC	A	1583.73	.	AC=1;AF=0.500;AN=2;DP=96;set=Intersection	GT:AD:AF:DP	0/1:44,43:0.49:87
chr5	138713959	rs6596474	A	C	5265.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr5	138714474	rs11950646	G	A	3313.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:135,150:0.53:285
chr5	138715502	rs33972313	C	T	5006.77	.	AC=1;AF=0.500;AN=2;DB;DP=524;set=Intersection	GT:AD:AF:DP	0/1:271,245:0.47:516
chr5	138718476	rs11242461	T	C	711.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr5	138718878	rs59914331	C	CA	451.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr5	138720156	rs12515989	C	T	7530.77	.	AC=1;AF=0.500;AN=2;DB;DP=798;set=Intersection	GT:AD:AF:DP	0/1:419,375:0.47:794
chr5	138720336	rs6596476	T	C	3959.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr5	138723112	rs138480317	C	CTCCA	732.73	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:37,20:0.35:57
chr5	138723168	.	G	GT	479.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.485;ClippingRankSum=0.000;DP=221;ExcessHet=3.0103;FS=6.671;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=2.945;QD=2.28;ReadPosRankSum=1.453;SOR=1.294;set=HC	GT:AD:AF:DP	0/1:148,62:0.30:210
chr5	138723408	rs62001866	G	A	4973.77	.	AC=1;AF=0.500;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	0/1:207,223:0.52:430
chr5	138724126	rs33937093	TG	T	3175.73	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr5	138724457	rs9327846	A	G	906.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr5	138728483	rs10078623	A	G	9869.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chr5	138728533	rs10063870	C	T	4098.77	.	AC=1;AF=0.500;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	0/1:208,193:0.48:401
chr5	138732579	rs10900862	C	T	3639.77	.	AC=1;AF=0.500;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	0/1:172,161:0.48:333
chr5	138738178	rs4074032	C	T	491.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:21,21:0.50:42
chr5	138754741	rs4835728	T	C	3997.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr5	138773090	rs10900864	A	G	10316.77	.	AC=2;AF=1.00;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	1/1:0,388:1.00:388
chr5	138775173	rs3923059	T	C	13625.77	.	AC=2;AF=1.00;AN=2;DB;DP=519;set=Intersection	GT:AD:AF:DP	1/1:2,514:1.00:516
chr5	138852019	rs79971357	C	A	1518.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.042;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=15.905;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.93;ReadPosRankSum=1.532;SOR=1.543;set=HC	GT:AD:AF:DP	0/1:61,78:0.56:139
chr5	138852369	rs13153461	G	A	5209.77	.	AC=1;AF=0.500;AN=2;DB;DP=509;set=Intersection	GT:AD:AF:DP	0/1:247,251:0.50:498
chr5	138857919	rs1131769	T	C	2246.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:137,113:0.45:250
chr5	138861146	rs7447927	C	G	4764.77	.	AC=1;AF=0.500;AN=2;DB;DP=462;set=Intersection	GT:AD:AF:DP	0/1:239,214:0.47:453
chr5	139202400	rs35306338	A	G	1911.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:115,96:0.45:211
chr5	139213452	rs4912884	A	G	1693.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr5	139216901	rs11440487	A	AG	7760.73	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr5	139494754	.	C	CCA	1373.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.611;ClippingRankSum=0.000;DP=116;ExcessHet=3.0103;FS=9.426;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.133;QD=13.34;ReadPosRankSum=-1.249;SOR=1.449;set=HC	GT:AD:AF:DP	0/1:57,46:0.45:103
chr5	139625160	rs189269036	G	A	1007.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:36,42:0.54:78
chr5	139625224	rs11558407	G	A	284.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:11,11:0.50:22
chr5	139641896	rs6867870	C	A	1354.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr5	139660916	rs3777095	G	A	727.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr5	139661279	rs6893253	T	C	1107.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr5	139680027	rs145830713	A	G	2015.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:80,82:0.51:162
chr5	139722345	rs2074611	G	A	3296.77	.	AC=1;AF=0.500;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	0/1:191,172:0.47:363
chr5	139740454	rs34507975	C	T	1635.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:93,82:0.47:175
chr5	139745154	rs6860077	T	C	1930.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:94,93:0.50:187
chr5	139907713	.	C	CT	168.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.275;ClippingRankSum=0.000;DP=63;ExcessHet=3.0103;FS=2.635;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.77;ReadPosRankSum=0.088;SOR=0.382;set=HC	GT:AD:AF:DP	0/1:42,19:0.31:61
chr5	139936680	rs10534174	AC	A	1276.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.106;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=0.817;QD=9.67;ReadPosRankSum=-0.463;SOR=0.467;set=HC	GT:AD:AF:DP	0/1:49,83:0.63:132
chr5	139936760	rs250426	G	T	3474.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:113,165:0.59:278
chr5	139936980	rs250427	A	G	6533.77	.	AC=1;AF=0.500;AN=2;DB;DP=649;set=Intersection	GT:AD:AF:DP	0/1:332,313:0.49:645
chr5	139939961	rs61736940	G	A	3665.77	.	AC=1;AF=0.500;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	0/1:198,177:0.47:375
chr5	139940233	rs250431	G	A	9806.77	.	AC=1;AF=0.500;AN=2;DB;DP=872;set=Intersection	GT:AD:AF:DP	0/1:389,463:0.54:852
chr5	139941228	rs250430	A	G	6831.77	.	AC=1;AF=0.500;AN=2;DB;DP=634;set=Intersection	GT:AD:AF:DP	0/1:299,320:0.52:619
chr5	139941318	rs171632	A	G	6333.77	.	AC=1;AF=0.500;AN=2;DB;DP=521;set=Intersection	GT:AD:AF:DP	0/1:231,281:0.55:512
chr5	140021482	rs11554680	C	T	3255.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:144,142:0.50:286
chr5	140021858	rs12153256	A	T	4063.77	.	AC=1;AF=0.500;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	0/1:173,180:0.51:353
chr5	140022436	rs3822356	A	G	1792.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:86,82:0.49:168
chr5	140023238	rs17208187	C	G	1882.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:85,88:0.51:173
chr5	140024042	rs753280	T	C	607.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:31,23:0.43:54
chr5	140024432	rs702399	C	T	1192.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:54,49:0.48:103
chr5	140024491	rs702398	A	G	1484.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:47,53:0.53:100
chr5	140027216	rs778593	T	C	4998.77	.	AC=1;AF=0.500;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	0/1:199,231:0.54:430
chr5	140027304	rs778594	T	C	1902.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:68,70:0.51:138
chr5	140027592	rs70988770	G	GGT	180.73	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:40,15:0.27:55
chr5	140027629	rs367602188	GTATGTA	G	272.73	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:56,21:0.27:77
chr5	140031537	rs1583005	G	A	1304.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:61,55:0.47:116
chr5	140037272	rs778596	G	A	1779.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:88,89:0.50:177
chr5	140039877	.	CTTTTT	C,CTT	990.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.796;ClippingRankSum=0.000;DP=69;ExcessHet=3.0103;FS=3.590;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=26.07;ReadPosRankSum=1.232;SOR=0.738;set=HC	GT:AD:AF:DP	1/2:1,20,17:0.53,0.45:38
chr5	140048209	rs2251860	T	C	4033.77	.	AC=1;AF=0.500;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	0/1:214,189:0.47:403
chr5	140048267	rs2530245	T	C	8654.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr5	140048544	rs2286394	C	T	3734.77	.	AC=1;AF=0.500;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	0/1:181,174:0.49:355
chr5	140051983	rs2530243	C	T	515.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:25,26:0.51:51
chr5	140052271	rs2563333	A	G	236.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:10,10:0.50:20
chr5	140054257	rs58302597	C	T	2172.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:113,103:0.48:216
chr5	140054485	rs2530241	C	T	2506.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:118,105:0.47:223
chr5	140062547	rs2530239	C	T	683.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:33,27:0.45:60
chr5	140073883	rs6883035	G	A	1416.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:67,62:0.48:129
chr5	140075011	rs112793807	C	CAGTTGATAT	610.73	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:8,16:0.67:24
chr5	140077699	rs2530234	A	G	3965.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr5	140080298	rs801168	T	C	211.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:8,9:0.53:17
chr5	140081791	rs809635	A	G	1377.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:54,62:0.53:116
chr5	140083744	rs17286731	G	A	370.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:28,17:0.38:45
chr5	140167463	rs3733710	C	T	1403.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:59,65:0.52:124
chr5	140168070	rs2240696	A	G	2802.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:146,124:0.46:270
chr5	140168151	rs2240695	G	T	4168.77	.	AC=1;AF=0.500;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	0/1:188,196:0.51:384
chr5	140174622	rs9686540	G	A	1564.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:99,75:0.43:174
chr5	140174865	rs11167600	G	C	3233.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:153,152:0.50:305
chr5	140180737	rs3806845	C	T	1352.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:83,69:0.45:152
chr5	140181734	rs3733708	A	G	8228.77	.	AC=1;AF=0.500;AN=2;DB;DP=832;set=Intersection	GT:AD:AF:DP	0/1:429,389:0.48:818
chr5	140181892	rs3733707	T	C	4120.77	.	AC=1;AF=0.500;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	0/1:223,186:0.45:409
chr5	140182101	rs7701755	G	T	2130.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:136,107:0.44:243
chr5	140183058	rs2240694	G	A	6900.77	.	AC=1;AF=0.500;AN=2;DB;DP=637;set=Intersection	GT:AD:AF:DP	0/1:305,324:0.52:629
chr5	140186438	rs3756337	G	C	1394.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:77,63:0.45:140
chr5	140186657	rs4151680	A	G	2852.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:100,121:0.55:221
chr5	140187048	rs3822349	G	C	508.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.583;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=28.169;MLEAC=1;MLEAF=0.500;MQ=58.33;MQRankSum=-8.544;QD=3.30;ReadPosRankSum=-1.017;SOR=2.979;set=HC	GT:AD:AF:DP	0/1:124,30:0.19:154
chr5	140187102	rs3822347	A	G	1863.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:184,91:0.33:275
chr5	140187322	rs3822346	C	T	3861.77	.	AC=1;AF=0.500;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	0/1:188,181:0.49:369
chr5	140188383	rs2337987	T	G	959.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:68,49:0.42:117
chr5	140188401	rs2879086	A	G	1468.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:81,74:0.48:155
chr5	140188575	rs2879087	G	C	3295.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:172,150:0.47:322
chr5	140201264	rs4151682	C	T	1638.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:56,72:0.56:128
chr5	140201420	rs11958868	T	C	4176.77	.	AC=1;AF=0.500;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	0/1:224,207:0.48:431
chr5	140203432	rs4141841	C	T	3938.77	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:164,172:0.51:336
chr5	140209467	rs7710794	T	G	4021.77	.	AC=1;AF=0.500;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	0/1:227,184:0.45:411
chr5	140214231	rs17844305	C	G	2706.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:136,118:0.46:254
chr5	140214381	rs10067182	G	A	2583.77	.	AC=1;AF=0.500;AN=2;DB;DP=525;set=Intersection	GT:AD:AF:DP	0/1:372,150:0.29:522
chr5	140228164	rs251353	C	A	3365.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr5	140229086	rs251354	C	G	2844.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr5	140230370	rs369636	AA	CC	15495.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chr5	140237387	rs251364	T	G	4307.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr5	140237548	rs630162	A	G	11537.77	.	AC=2;AF=1.00;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	1/1:0,425:1.00:425
chr5	140242451	rs11321479	GC	G	5434.73	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr5	140242479	rs251369	T	A	5630.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr5	140248539	rs192231	C	T	466.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:18,20:0.53:38
chr5	140249884	rs62622798	C	T	1880.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:125,83:0.40:208
chr5	140255792	rs251377	C	A	5043.77	.	AC=1;AF=0.500;AN=2;DB;DP=578;set=Intersection	GT:AD:AF:DP	0/1:319,253:0.44:572
chr5	140262492	rs11744560	A	T	6310.77	.	AC=1;AF=0.500;AN=2;DB;DP=563;set=Intersection	GT:AD:AF:DP	0/1:271,287:0.51:558
chr5	140263290	rs251380	T	G	6097.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr5	140307284	rs155361	G	A	4724.77	.	AC=1;AF=0.500;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	0/1:201,217:0.52:418
chr5	140307969	rs246074	C	G	2691.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:97,116:0.54:213
chr5	140309016	rs155360	C	T	1571.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:49,66:0.57:115
chr5	140346468	rs155364	T	A	4048.77	.	AC=1;AF=0.500;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	0/1:233,201:0.46:434
chr5	140347398	rs12153295	C	T	7129.77	.	AC=1;AF=0.500;AN=2;DB;DP=650;set=Intersection	GT:AD:AF:DP	0/1:308,336:0.52:644
chr5	140476653	rs1047372	GC	AA	2512.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.359;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=5.516;JOINED;MLEAC=1;MLEAF=0.500;MQ=43.84;MQRankSum=-0.770;QD=19.04;ReadPosRankSum=1.635;SOR=1.273;set=HC	GT:AD:AF:DP	0/1:68,64:0.48:132
chr5	140480852	rs12515688	G	A	3912.77	.	AC=1;AF=0.500;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	0/1:169,171:0.50:340
chr5	140481475	rs3733699	A	T	2255.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:116,111:0.49:227
chr5	140482483	rs31848	G	A	3264.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.936;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.90;MQRankSum=0.566;QD=31.09;ReadPosRankSum=-0.805;SOR=1.448;set=HC	GT:AD:AF:DP	1/1:1,104:0.99:105
chr5	140502177	rs3776100	G	A	4634.77	.	AC=1;AF=0.500;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	0/1:218,209:0.49:427
chr5	140502343	rs3733698	CC	TT	7940.77	.	AC=1;AF=0.500;AN=2;DB;DP=402;JOINED;set=Intersection	GT:AD:AF:DP	0/1:191,204:0.52:395
chr5	140517174	rs400562	T	C	790.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:48,34:0.41:82
chr5	140529711	rs4151693	C	T	169.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:18,9:0.33:27
chr5	140529778	rs4151694	C	G	624.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:42,32:0.43:74
chr5	140530529	rs3776096	G	A	6691.77	.	AC=1;AF=0.500;AN=2;DB;DP=671;set=Intersection	GT:AD:AF:DP	0/1:349,304:0.47:653
chr5	140530852	rs246708	G	C	5876.77	.	AC=1;AF=0.500;AN=2;DB;DP=628;set=Intersection	GT:AD:AF:DP	0/1:351,266:0.43:617
chr5	140532165	rs17844444	G	A	4324.77	.	AC=1;AF=0.500;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	0/1:245,213:0.47:458
chr5	140552558	rs17096945	T	C	3102.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:109,131:0.55:240
chr5	140552774	rs17286891	G	A	4500.77	.	AC=1;AF=0.500;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	0/1:203,208:0.51:411
chr5	140553581	rs2910313	G	C	2333.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:123,104:0.46:227
chr5	140553664	rs3733695	G	A	992.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:55,47:0.46:102
chr5	140554808	rs6892507	T	A	2557.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.003;ClippingRankSum=0.000;DB;DP=734;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.000;QD=3.60;ReadPosRankSum=-0.352;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:538,173:0.24:711
chr5	140557779	rs202152706	T	C	228.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.146;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=3.124;MLEAC=1;MLEAF=0.500;MQ=40.00;MQRankSum=0.000;QD=5.32;ReadPosRankSum=0.076;SOR=1.513;set=HC	GT:AD:AF:DP	0/1:30,13:0.30:43
chr5	140558326	rs2910317	T	C	4694.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.387;ClippingRankSum=0.000;DB;DP=1162;ExcessHet=3.0103;FS=1.967;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=4.08;ReadPosRankSum=0.847;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:836,316:0.27:1152
chr5	140558528	rs3733694	A	G	2907.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.483;ClippingRankSum=0.000;DB;DP=794;ExcessHet=3.0103;FS=1.308;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=3.72;ReadPosRankSum=0.646;SOR=0.553;set=HC	GT:AD:AF:DP	0/1:592,189:0.24:781
chr5	140559849	rs17096961	G	A	1262.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:66,62:0.48:128
chr5	140559914	rs2740583	T	C	1761.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:100,86:0.46:186
chr5	140561983	rs2204704	A	G	919.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:25,34:0.58:59
chr5	140562073	rs4151695	A	C	2531.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:117,122:0.51:239
chr5	140563173	rs28664170	G	T	9441.77	.	AC=1;AF=0.500;AN=2;DB;DP=955;set=Intersection	GT:AD:AF:DP	0/1:490,458:0.48:948
chr5	140564214	rs61739446	T	C	1342.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:45,59:0.57:104
chr5	140564594	rs10060104	C	T	1412.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:33,55:0.62:88
chr5	140567608	rs11167743	C	T	3140.77	.	AC=1;AF=0.500;AN=2;DB;DP=500;set=Intersection	GT:AD:AF:DP	0/1:325,170:0.34:495
chr5	140568034	rs33974901	C	CA	17117.73	.	AC=2;AF=1.00;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	1/1:0,462:1.00:462
chr5	140568131	rs10040383	A	G	3169.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:164,151:0.48:315
chr5	140568167	rs2697530	T	A	2607.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:115,120:0.51:235
chr5	140572668	rs597064	C	T	3516.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:141,160:0.53:301
chr5	140579358	rs3756323	A	G	2627.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:148,131:0.47:279
chr5	140590766	rs2910006	A	G	3593.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:153,165:0.52:318
chr5	140595106	rs2910329	C	G	1310.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:38,55:0.59:93
chr5	140614165	rs73281222	C	T	650.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:33,31:0.48:64
chr5	140615101	rs201031644	C	G	3938.77	.	AC=1;AF=0.500;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	0/1:239,181:0.43:420
chr5	140615413	rs3733683	C	G	679.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:44,32:0.42:76
chr5	140620221	rs138722366	GCCAC	G	1155.73	.	AC=1;AF=0.500;AN=2;DB;DP=63;MQ=60.17;set=Intersection	GT:AD:AF:DP	0/1:29,31:0.52:60
chr5	140620228	rs111514971	T	C	1164.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:27,30:0.53:57
chr5	140626529	rs17844564	C	T	892.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:41,38:0.48:79
chr5	140626627	rs618096	G	A	2138.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:139,110:0.44:249
chr5	140626724	rs3776091	T	G	2623.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:124,128:0.51:252
chr5	140627605	rs143037265	C	CT	557.73	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:22,32:0.59:54
chr5	140683265	rs11952797	G	A	22667.77	.	AC=2;AF=1.00;AN=2;DB;DP=822;set=Intersection	GT:AD:AF:DP	1/1:1,813:1.00:814
chr5	140710705	rs2472647	G	A	4636.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr5	140723835	rs11575947	C	T	2041.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:109,94:0.46:203
chr5	140739874	rs13171859	G	A	6808.77	.	AC=1;AF=0.500;AN=2;DB;DP=744;set=Intersection	GT:AD:AF:DP	0/1:404,327:0.45:731
chr5	140750044	rs6860609	T	C	7608.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr5	140769293	rs150721796	C	T	2040.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:114,92:0.45:206
chr5	140774288	rs4912749	T	C	8277.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr5	140778580	rs145783835	G	A	7493.77	.	AC=1;AF=0.500;AN=2;DB;DP=710;set=Intersection	GT:AD:AF:DP	0/1:365,337:0.48:702
chr5	140953563	rs35249023	TGGA	T	387.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.032;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=0.949;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=4.491;QD=2.53;ReadPosRankSum=2.358;SOR=0.501;set=HC	GT:AD:AF:DP	0/1:132,21:0.14:153
chr5	140953681	rs182139018	C	T	2766.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:155,137:0.47:292
chr5	141004837	.	CAGG	C	4479.73	.	AC=1;AF=0.500;AN=2;DP=209;set=Intersection	GT:AD:AF:DP	0/1:93,115:0.55:208
chr5	141016276	rs32954	T	C	30193.77	.	AC=2;AF=1.00;AN=2;DB;DP=1113;set=Intersection	GT:AD:AF:DP	1/1:0,1106:1.00:1106
chr5	141034749	.	TACACAC	T	337.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.319;ClippingRankSum=-0.000;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.65;ReadPosRankSum=-0.000;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:15,14:0.48:29
chr5	141034778	.	ACACC	A	407	.	AC=1;AF=0.500;AN=2;BRF=0.4;FR=0.5000;HP=2;HapScore=3;MGOF=19;MMLQ=22;MQ=60.0;NF=16;NR=14;PP=407;QD=13.6666666667;SC=ACACACACACACACCCTGATG;SbPval=0.35;Source=Platypus;TC=47;TCF=28;TCR=19;TR=30;WE=141034805;WS=141034768;set=Platypus	GT:AD:AF:DP	0/1:17,30:0.64:47
chr5	141034792	rs10537938	TAC	T	349.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.966;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.03;ReadPosRankSum=0.684;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:38,20:0.34:58
chr5	141235916	rs145694332	TGGGAGGTTAGACAAGGGCCC	T	2021.73	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr5	141237149	rs79190729	CAAG	C	751.73	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:17,20:0.54:37
chr5	141243646	rs3797054	A	G	3968.77	.	AC=1;AF=0.500;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	0/1:163,183:0.53:346
chr5	141247181	.	TA	T	514.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.170;ClippingRankSum=0.000;DP=220;ExcessHet=3.0103;FS=0.676;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.462;QD=2.74;ReadPosRankSum=-1.021;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:117,71:0.38:188
chr5	141257977	.	A	AGGCGGCGGC	782.73	.	AC=1;AF=0.500;AN=2;DP=44;set=Intersection	GT:AD:AF:DP	0/1:11,21:0.66:32
chr5	141304314	rs6580206	T	A	1295.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.614;ClippingRankSum=0.000;DB;DP=323;ExcessHet=3.0103;FS=2.158;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=-0.727;QD=4.78;ReadPosRankSum=3.516;SOR=0.567;set=HC	GT:AD:AF:DP	0/1:176,95:0.35:271
chr5	141309824	rs351260	G	A	1912.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:78,91:0.54:169
chr5	141312659	.	CAA	C	175.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=19.53;ReadPosRankSum=-0.524;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:2,7:0.78:9
chr5	141312676	rs7443118	A	T	159.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.189;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.52;ReadPosRankSum=-0.652;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:3,8:0.73:11
chr5	141324955	rs5871792	C	CCTGCTGCTG	6246.73	.	AC=1;AF=0.500;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	0/1:209,166:0.44:375
chr5	141325249	rs105633	T	C	13748.77	.	AC=2;AF=1.00;AN=2;DB;DP=526;set=Intersection	GT:AD:AF:DP	1/1:0,522:1.00:522
chr5	141335241	rs164073	A	G	8479.77	.	AC=1;AF=0.500;AN=2;DB;DP=804;MQ=60.01;set=Intersection	GT:AD:AF:DP	0/1:416,384:0.48:800
chr5	141335284	rs164074	G	A	7928.77	.	AC=1;AF=0.500;AN=2;DB;DP=752;MQ=60.01;set=Intersection	GT:AD:AF:DP	0/1:383,365:0.49:748
chr5	141335498	rs164515	C	T	8936.77	.	AC=1;AF=0.500;AN=2;DB;DP=859;set=Intersection	GT:AD:AF:DP	0/1:426,425:0.50:851
chr5	141336264	rs164075	G	T	3239.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:174,149:0.46:323
chr5	141337126	rs164076	C	T	8527.77	.	AC=1;AF=0.500;AN=2;DB;DP=855;set=Intersection	GT:AD:AF:DP	0/1:442,406:0.48:848
chr5	141337225	rs164077	A	G	6552.77	.	AC=1;AF=0.500;AN=2;DB;DP=644;set=Intersection	GT:AD:AF:DP	0/1:311,316:0.50:627
chr5	141354220	rs187542	G	C	614.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr5	141357719	rs66768569	TTGTA	T	2109.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr5	141364511	rs252099	A	G	21476.77	.	AC=2;AF=1.00;AN=2;DB;DP=830;set=Intersection	GT:AD:AF:DP	1/1:0,827:1.00:827
chr5	141364637	rs252100	C	T	4822.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr5	141367202	rs374840	GA	TT	6154.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr5	141371557	rs143763915	CTTT	C	957.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.517;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=5.563;MLEAC=1;MLEAF=0.500;MQ=60.39;MQRankSum=0.530;QD=25.88;ReadPosRankSum=-0.968;SOR=2.091;set=HC	GT:AD:AF:DP	1/1:2,35:0.95:37
chr5	141382584	rs252114	T	C	3014.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr5	141391532	rs164080	G	A	4772.77	.	AC=1;AF=0.500;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	0/1:245,234:0.49:479
chr5	141488792	rs9324865	T	C	268.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	141533062	rs449454	A	G	3492.77	.	AC=1;AF=0.500;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	0/1:166,167:0.50:333
chr5	142393562	rs3822397	G	A	4803.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr5	142416741	rs192194	T	C	7364.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:2,258:0.99:260
chr5	142421287	rs59126415	GA	G	1505.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.044;ClippingRankSum=0.000;DB;DP=251;ExcessHet=3.0103;FS=4.155;MLEAC=1;MLEAF=0.500;MQ=60.39;MQRankSum=2.356;QD=7.31;ReadPosRankSum=1.478;SOR=1.049;set=HC	GT:AD:AF:DP	0/1:62,144:0.70:206
chr5	142421415	rs2270068	T	G	13127.77	.	AC=2;AF=1.00;AN=2;DB;DP=493;set=Intersection	GT:AD:AF:DP	1/1:0,487:1.00:487
chr5	142513686	rs246607	A	G	6265.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr5	142593652	rs258819	C	T	2068.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr5	142595995	rs258821	C	T	632.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:25,29:0.54:54
chr5	142596013	rs258822	C	T	1137.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr5	142601811	rs72399054	TACACACACACAC	T,TAC	2445.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=78;set=Intersection	GT:AF:DP	1/1:0.97:67
chr5	142662342	.	C	CT	114.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.074;ClippingRankSum=0.000;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.517;QD=1.42;ReadPosRankSum=0.631;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:61,20:0.25:81
chr5	142671092	rs150299999	A	ATTACTTTTCTTTAGCCTAAG	1548.73	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:74,37:0.33:111
chr5	142680344	rs6188	C	A	817.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:37,33:0.47:70
chr5	143059378	rs17100639	G	A	2358.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:137,110:0.45:247
chr5	143059433	rs2042253	T	C	4859.77	.	AC=1;AF=0.500;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	0/1:194,229:0.54:423
chr5	143200053	rs161557	C	T	3220.77	.	AC=1;AF=0.500;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	0/1:176,156:0.47:332
chr5	145144419	rs338887	G	T	6600.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:1,242:1.00:243
chr5	145176221	rs338898	C	T	2672.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr5	145197411	rs6870210	C	T	17955.77	.	AC=2;AF=1.00;AN=2;DB;DP=667;set=Intersection	GT:AD:AF:DP	1/1:0,662:1.00:662
chr5	145198805	rs624380	T	C	4124.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr5	145199430	rs11293460	AG	A	4184.73	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr5	145199681	rs139755910	TTTTTG	T	335.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.030;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=5.497;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.63;ReadPosRankSum=-0.517;SOR=2.636;set=HC	GT:AD:AF:DP	0/1:17,27:0.61:44
chr5	145199682	.	TTTTG	T	97.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.488;ClippingRankSum=0.000;DP=69;ExcessHet=3.0103;FS=2.462;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.17;ReadPosRankSum=1.888;SOR=0.140;set=HC	GT:AD:AF:DP	0/1:32,13:0.29:45
chr5	145202461	rs6898776	C	T	1283.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr5	145393364	rs758037	C	T	9668.77	.	AC=1;AF=0.500;AN=2;DB;DP=925;set=Intersection	GT:AD:AF:DP	0/1:459,452:0.50:911
chr5	145427527	rs1859895	T	A	2821.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:143,129:0.47:272
chr5	145439647	rs2962525	T	C	14774.77	.	AC=2;AF=1.00;AN=2;DB;DP=560;set=Intersection	GT:AD:AF:DP	1/1:0,558:1.00:558
chr5	145442203	rs1056149	G	C	6363.77	.	AC=1;AF=0.500;AN=2;DB;DP=588;set=Intersection	GT:AD:AF:DP	0/1:293,288:0.50:581
chr5	145477855	rs6877277	T	C	1441.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:86,71:0.45:157
chr5	145478009	rs6892928	C	T	246.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:15,11:0.42:26
chr5	145483679	rs12188066	T	C	776.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:49,33:0.40:82
chr5	145483713	rs12187128	C	T	1333.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:77,61:0.44:138
chr5	145483844	rs12187913	A	T	4502.77	.	AC=1;AF=0.500;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	0/1:194,212:0.52:406
chr5	145499996	rs10988	C	T	4964.77	.	AC=1;AF=0.500;AN=2;DB;DP=523;set=Intersection	GT:AD:AF:DP	0/1:276,239:0.46:515
chr5	145500157	rs11167931	A	G	2528.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:127,117:0.48:244
chr5	145508340	rs2895647	A	G	2884.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:108,129:0.54:237
chr5	145508457	rs2895648	T	C	1991.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:36,52:0.59:88
chr5	145508471	rs2895649	T	C	2025.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:43,55:0.56:98
chr5	145508636	rs61732383	TA	CC	4288.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;JOINED;set=Intersection	GT:AD:AF:DP	0/1:144,116:0.45:260
chr5	145508688	rs142298525	AAAAAAG	A	1470.73	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:77,43:0.36:120
chr5	145509573	rs11953517	G	A	2704.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:181,139:0.43:320
chr5	145512379	rs66471844	AG	A	127.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.096;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=1.833;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.84;ReadPosRankSum=-1.764;SOR=1.078;set=HC	GT:AD:AF:DP	0/1:32,13:0.29:45
chr5	145515346	rs12153109	C	T	471.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.556;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.41;ReadPosRankSum=-0.787;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:19,19:0.50:38
chr5	145515379	rs2963919	C	T	222.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:8,10:0.56:18
chr5	145519603	rs67598659	C	T	750.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:33,31:0.48:64
chr5	145519821	rs17493851	G	A	3023.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:149,147:0.50:296
chr5	145519948	rs11951553	C	T	467.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:14,20:0.59:34
chr5	145522674	rs146274608	T	TTATATA	610.73	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:35,18:0.34:53
chr5	145522912	rs2962504	A	G	9916.77	.	AC=2;AF=1.00;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	1/1:0,386:1.00:386
chr5	145523105	rs11540217	G	A	4394.77	.	AC=1;AF=0.500;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	0/1:181,196:0.52:377
chr5	145532859	rs17500483	T	C	1751.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:80,54:0.40:134
chr5	145532876	rs17500504	A	G	1565.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:60,39:0.39:99
chr5	145532927	rs17428465	T	C	440.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:22,18:0.45:40
chr5	145533128	rs34090359	T	C	307.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:24,15:0.38:39
chr5	145533418	rs34342344	T	A	2508.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:97,115:0.54:212
chr5	145538924	rs13178516	T	A	696.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:38,35:0.48:73
chr5	145539123	rs13182567	T	A	797.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:44,37:0.46:81
chr5	145539996	rs11540214	T	G	1161.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:58,61:0.51:119
chr5	145543972	rs3763373	G	A	4695.77	.	AC=1;AF=0.500;AN=2;DB;DP=564;set=Intersection	GT:AD:AF:DP	0/1:318,234:0.42:552
chr5	145557388	rs11949351	C	G	1240.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:58,56:0.49:114
chr5	145559173	rs13157279	T	C	1113.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:65,58:0.47:123
chr5	145559214	rs13171596	C	T	822.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:47,40:0.46:87
chr5	145562143	rs11540215	G	A	3430.77	.	AC=1;AF=0.500;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:146,157:0.52:303
chr5	145643048	rs7729098	G	A	2040.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:90,95:0.51:185
chr5	145647187	rs55635431	CT	C	422.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.941;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=1.427;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.63;ReadPosRankSum=-2.054;SOR=0.404;set=HC	GT:AD:AF:DP	0/1:19,30:0.61:49
chr5	145827085	rs76833679	C	T	1035.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.421;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=4.678;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.68;ReadPosRankSum=-1.263;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:48,49:0.51:97
chr5	145834529	rs10044956	C	T	1012.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:38,44:0.54:82
chr5	145838440	rs11743333	G	A	5158.77	.	AC=1;AF=0.500;AN=2;DB;DP=595;set=Intersection	GT:AD:AF:DP	0/1:304,280:0.48:584
chr5	145850328	rs12657671	T	C	1080.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:44,52:0.54:96
chr5	145850459	rs11463725	G	GT	36.73	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:5,4:0.44:9
chr5	145851163	rs141675712	AT	A	552.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.413;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=0.728;QD=7.47;ReadPosRankSum=-0.057;SOR=0.808;set=HC	GT:AD:AF:DP	0/1:24,50:0.68:74
chr5	145888687	.	C	CT	109.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.762;ClippingRankSum=0.000;DP=51;ExcessHet=3.0103;FS=7.669;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.24;ReadPosRankSum=-0.252;SOR=0.145;set=HC	GT:AD:AF:DP	0/1:35,14:0.29:49
chr5	145890028	rs4705103	A	G	4526.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr5	145894896	rs7709485	G	C	3597.77	.	AC=1;AF=0.500;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	0/1:188,164:0.47:352
chr5	145969657	rs150241846	C	A	5987.77	.	AC=1;AF=0.500;AN=2;DB;DP=610;set=Intersection	GT:AD:AF:DP	0/1:312,291:0.48:603
chr5	145979787	rs146655608	C	T	549.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:22,23:0.51:45
chr5	146030055	rs6866598	C	T	9717.77	.	AC=2;AF=1.00;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	1/1:0,360:1.00:360
chr5	146420371	rs35011506	TA	T	268.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.921;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=4.676;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.61;ReadPosRankSum=0.176;SOR=1.255;set=HC	GT:AD:AF:DP	0/1:70,33:0.32:103
chr5	146434047	rs5872003	TA	T	625.73	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:58,44:0.43:102
chr5	146434060	rs2400241	C	T	1621.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:72,64:0.47:136
chr5	146434146	rs720305	C	T	5249.77	.	AC=1;AF=0.500;AN=2;DB;DP=501;set=Intersection	GT:AD:AF:DP	0/1:242,250:0.51:492
chr5	146435163	rs11958187	G	A	777.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr5	146619206	rs4705132	G	C	3469.77	.	AC=1;AF=0.500;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	0/1:211,175:0.45:386
chr5	146657584	rs6580458	T	C	1319.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr5	146657838	rs6580459	G	A	4568.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:1,163:0.99:164
chr5	146722890	rs6884181	C	T	323.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:10,15:0.60:25
chr5	146728147	rs62377744	T	C	1151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.627;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.75;ReadPosRankSum=-0.098;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:47,51:0.52:98
chr5	146728147	.	TAC	CAG	609	.	AC=1;AF=0.500;AN=2;BRF=0.42;FR=0.5000;HP=2;HapScore=2;MGOF=3;MMLQ=28;MQ=60.0;NF=30;NR=8;PP=609;QD=17.433365128;SC=TACATGAGCATACATAATCTT;SbPval=0.64;Source=Platypus;TC=74;TCF=57;TCR=17;TR=38;WE=146728157;WS=146728137;set=Platypus	GT:AD:AF:DP	1/0:36,38:0.51:74
chr5	146728149	rs10072514	C	G	3795.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.85;SOR=1.902;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr5	146728396	rs72831396	C	T	1503.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:71,68:0.49:139
chr5	146753004	rs4235731	T	C	3220.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr5	146754839	rs10515585	C	G	1519.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:88,70:0.44:158
chr5	146775311	rs2288808	A	T	1948.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:81,87:0.52:168
chr5	146775377	rs2288807	G	C	2507.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr5	146777188	rs2304045	A	G	6208.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr5	146777446	.	T	TATAGAA	740.73	.	AC=1;AF=0.500;ALERT;AN=2;DP=50;set=Intersection	GT:AD:AF:DP	0/1:20,21:0.51:41
chr5	146777447	rs74828553	A	ATAGAAAGAG	725.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:21,20:0.49:41
chr5	146778867	rs17550470	T	C	974.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:33,40:0.55:73
chr5	146780273	rs10515587	G	A	4431.77	.	AC=1;AF=0.500;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	0/1:210,218:0.51:428
chr5	146780521	rs13168262	C	T	1113.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:60,53:0.47:113
chr5	146781440	rs3816013	A	C	520.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr5	146971253	rs7449194	C	T	7053.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr5	146971279	rs77301397	A	G	2049.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.638;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=0.579;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.78;ReadPosRankSum=0.598;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:78,96:0.55:174
chr5	146981164	rs111740872	TCAAAACAAAACAAAA	T	733.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.16;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	147003436	rs56384964	G	A	832.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:36,37:0.51:73
chr5	147012186	rs3763093	C	T	1881.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:96,87:0.48:183
chr5	147012291	rs3763094	G	A	6173.77	.	AC=1;AF=0.500;AN=2;DB;DP=618;set=Intersection	GT:AD:AF:DP	0/1:310,303:0.49:613
chr5	147016368	rs2116768	C	T	215.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:10,9:0.47:19
chr5	147019114	rs10515588	T	C	3416.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:145,159:0.52:304
chr5	147019335	rs79801275	GA	G	1671.73	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:67,92:0.58:159
chr5	147020419	rs1529686	T	C	812.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;MQ=60.14;set=Intersection	GT:AD:AF:DP	0/1:38,37:0.49:75
chr5	147020443	rs1529685	C	T	600.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:24,27:0.53:51
chr5	147021086	rs3765006	T	G	1466.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:57,60:0.51:117
chr5	147024476	rs2116766	C	A	4750.77	.	AC=1;AF=0.500;AN=2;DB;DP=476;set=Intersection	GT:AD:AF:DP	0/1:239,231:0.49:470
chr5	147024509	rs2116765	C	T	4324.77	.	AC=1;AF=0.500;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	0/1:218,209:0.49:427
chr5	147024608	rs2116764	G	A	1960.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:84,85:0.50:169
chr5	147027930	rs7735403	A	G	1745.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:105,87:0.45:192
chr5	147040101	rs139209631	A	AAAAC	3866.73	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:91,99:0.52:190
chr5	147040112	rs114468800	T	C	3941.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;MQ=60.05;set=Intersection	GT:AD:AF:DP	0/1:92,104:0.53:196
chr5	147258162	rs1368408	G	A	623.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:15,24:0.62:39
chr5	147258495	rs2278376	C	A	1264.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:60,56:0.48:116
chr5	147258535	rs3217372	AT	A	430.73	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:27,29:0.52:56
chr5	147261484	rs3910207	C	T	468.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:17,20:0.54:37
chr5	147261812	rs3843496	T	C	624.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:27,27:0.50:54
chr5	147286054	rs2250145	G	A	10463.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	1/1:0,381:1.00:381
chr5	147444785	rs2287772	A	G	218.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr5	147444989	rs9325061	G	A	3411.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:88,104:0.54:192
chr5	147445023	rs1609851	C	G	2955.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:61,77:0.56:138
chr5	147445108	rs3036741	TCACACA	T	812.73	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:14,22:0.61:36
chr5	147445124	rs1007979	A	G	820.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.953;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=1.816;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.80;ReadPosRankSum=-1.406;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:14,22:0.61:36
chr5	147449855	rs1423001	A	G	466.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:14,19:0.58:33
chr5	147450085	rs3752676	C	A	1035.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:38,49:0.56:87
chr5	147468614	rs10038561	A	G	3671.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.391;ClippingRankSum=0.000;DB;DP=336;ExcessHet=3.0103;FS=3.022;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.16;ReadPosRankSum=-0.869;SOR=0.884;set=HC	GT:AD:AF:DP	0/1:157,172:0.52:329
chr5	147468971	rs4529181	G	C	1264.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:47,56:0.54:103
chr5	147469113	rs35121983	G	A	3267.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:173,158:0.48:331
chr5	147475627	rs62388364	G	A	205.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:13,10:0.43:23
chr5	147478654	rs11405253	G	GT	1553.73	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:67,61:0.48:128
chr5	147480080	rs2303064	G	A	3622.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:179,173:0.49:352
chr5	147484465	.	G	GA	409.73	.	AC=1;AF=0.500;AN=2;DP=62;set=Intersection	GT:AD:AF:DP	0/1:31,27:0.47:58
chr5	147488575	rs3815741	T	C	232.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr5	147491193	rs3815740	A	G	107.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:15,7:0.32:22
chr5	147491218	rs2287770	A	G	257.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:26,14:0.35:40
chr5	147491299	rs2287769	C	T	1736.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:98,88:0.47:186
chr5	147491552	rs2287767	A	G	636.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:26,27:0.51:53
chr5	147492288	rs77701346	GA	AG	1111.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;JOINED;set=Intersection	GT:AD:AF:DP	0/1:19,29:0.60:48
chr5	147492384	rs72660259	T	G	2236.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:70,104:0.60:174
chr5	147493831	.	C	A	508.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.152;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;FS=7.150;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=-0.891;QD=11.31;ReadPosRankSum=-0.552;SOR=2.391;set=HC	GT:AD:AF:DP	0/1:24,21:0.47:45
chr5	147493871	rs3815735	G	A	1372.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:54,61:0.53:115
chr5	147497871	rs6891892	T	C	1131.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr5	147497932	rs3777135	T	C	646.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:44,33:0.43:77
chr5	147498019	rs3777134	G	A	1788.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:108,92:0.46:200
chr5	147498523	rs3764926	T	C	1509.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:49,69:0.58:118
chr5	147498652	rs9325073	C	G	8825.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:0,337:1.00:337
chr5	147498669	rs9325074	G	A	11469.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.97;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:0,328:1.00:328
chr5	147498669	.	GCAG	ACAA,ACAG	1549	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.44;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=25;MMLQ=24;MQ=59.98;NF=49,105;NR=59,112;PP=1549,1373;QD=14.837665508;SC=CTGTGAGTCAGCAGTTGGCGA;SbPval=0.66;Source=Platypus;TC=219;TCF=106;TCR=113;TR=108,217;WE=147498680;WS=147498659;set=Platypus	GT:AF:DP	0/1:0.49:219
chr5	147498672	rs12518996	G	A	3120.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.142;ClippingRankSum=0.000;DB;DP=324;ExcessHet=3.0103;FS=1.822;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.69;ReadPosRankSum=1.413;SOR=0.798;set=HC	GT:AD:AF:DP	0/1:164,158:0.49:322
chr5	147498763	rs9325075	C	A	2911.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr5	147499616	rs17704908	C	T	2997.77	.	AC=1;AF=0.500;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	0/1:213,148:0.41:361
chr5	147499670	rs33920397	C	T	3802.77	.	AC=1;AF=0.500;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	0/1:260,189:0.42:449
chr5	147499891	rs2303070	G	T	4557.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.181;ClippingRankSum=0.000;DB;DP=532;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.73;ReadPosRankSum=1.313;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:290,232:0.44:522
chr5	147504305	rs3036731	C	CT	226.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.934;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.27;ReadPosRankSum=-0.221;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:24,19:0.44:43
chr5	147504315	rs2052537	A	T	1638.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr5	147504539	rs2303075	G	C	695.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.345;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=1.113;QD=19.33;ReadPosRankSum=-1.146;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:17,19:0.53:36
chr5	147504539	.	GTA	CTT	603	.	AC=1;AF=0.500;AN=2;BRF=0.15;FR=0.5000;HP=4;HapScore=2;MGOF=19;MMLQ=23;MQ=59.97;NF=3;NR=11;PP=603;QD=46.8905624902;SC=TTGTCACTTTGTATCATAACA;SbPval=0.82;Source=Platypus;TC=33;TCF=10;TCR=23;TR=14;WE=147504549;WS=147504529;set=Platypus	GT:AD:AF:DP	1/0:19,14:0.42:33
chr5	147504541	rs2303074	A	T	695.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.077;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=1.059;QD=20.46;ReadPosRankSum=-0.577;SOR=0.955;set=HC	GT:AD:AF:DP	0/1:17,17:0.50:34
chr5	147504557	rs2052536	T	G	338.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;MQ=59.97;set=Intersection	GT:AD:AF:DP	0/1:14,15:0.52:29
chr5	147505116	rs3764930	G	A	2880.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:140,134:0.49:274
chr5	147505227	rs2112767	G	A	4979.77	.	AC=1;AF=0.500;AN=2;DB;DP=483;set=Intersection	GT:AD:AF:DP	0/1:249,233:0.48:482
chr5	147510776	rs6895434	T	C	2064.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:98,91:0.48:189
chr5	147510866	rs2400478	T	C	5473.77	.	AC=1;AF=0.500;AN=2;DB;DP=575;set=Intersection	GT:AD:AF:DP	0/1:306,260:0.46:566
chr5	147516470	rs4334874	C	T	1906.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:95,86:0.48:181
chr5	147516598	rs4349706	T	C	5298.77	.	AC=1;AF=0.500;AN=2;DB;DP=478;set=Intersection	GT:AD:AF:DP	0/1:230,243:0.51:473
chr5	147516762	rs3088193	C	G	799.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:43,36:0.46:79
chr5	147549163	rs4269285	T	C	2346.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:125,103:0.45:228
chr5	147554889	rs10052031	A	C	349.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:28,17:0.38:45
chr5	147554997	rs147123556	TTTTTTCC	T	2006.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.347;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=1.373;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=1.723;QD=14.86;ReadPosRankSum=0.197;SOR=0.828;set=HC	GT:AD:AF:DP	0/1:80,55:0.41:135
chr5	147555029	rs10074328	C	T	1226.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:81,59:0.42:140
chr5	147585797	.	C	CTCATT	1641.73	.	AC=1;AF=0.500;AN=2;DP=114;set=Intersection	GT:AD:AF:DP	0/1:51,44:0.46:95
chr5	147585799	.	TAAC	T	2083.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.911;ClippingRankSum=0.000;DP=111;ExcessHet=3.0103;FS=6.916;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.47;ReadPosRankSum=-1.131;SOR=1.569;set=HC	GT:AD:AF:DP	0/1:52,55:0.51:107
chr5	147585805	.	C	T	1658.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.760;ClippingRankSum=0.000;DP=107;ExcessHet=3.0103;FS=6.934;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.84;ReadPosRankSum=-0.658;SOR=1.533;set=HC	GT:AD:AF:DP	0/1:49,44:0.47:93
chr5	147585806	.	AC	A	1649.73	.	AC=1;AF=0.500;ALERT;AN=2;DP=105;set=Intersection	GT:AD:AF:DP	0/1:47,44:0.48:91
chr5	147593497	rs12186491	C	A	5257.77	.	AC=1;AF=0.500;AN=2;DB;DP=491;set=Intersection	GT:AD:AF:DP	0/1:228,253:0.53:481
chr5	147665421	.	G	GA	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.184;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=1.970;QD=1.13;ReadPosRankSum=-0.628;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:29,8:0.22:37
chr5	147691840	rs13168328	T	C	286.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:19,12:0.39:31
chr5	147785802	rs201558003	AT	A	295.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.027;ClippingRankSum=0.000;DB;DP=296;ExcessHet=3.0103;FS=3.726;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.03;ReadPosRankSum=-0.716;SOR=0.453;set=HC	GT:AD:AF:DP	0/1:222,64:0.22:286
chr5	147795697	.	A	AT	267.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.478;ClippingRankSum=0.000;DP=161;ExcessHet=3.0103;FS=4.821;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.06;ReadPosRankSum=-0.286;SOR=0.310;set=HC	GT:AD:AF:DP	0/1:98,32:0.25:130
chr5	147817851	rs114634214	C	T	1619.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:57,59:0.51:116
chr5	148016537	rs17639735	A	G	2314.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:155,122:0.44:277
chr5	148045282	rs1820076	C	T	479.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:25,21:0.46:46
chr5	148206375	rs1801704	C	T	1040.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:42,39:0.48:81
chr5	148206440	rs1042713	G	A	2374.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:115,111:0.49:226
chr5	148206473	rs1042714	G	C	3919.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:151,181:0.55:332
chr5	148207659	rs372621803	AC	A,ACC	944.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.696;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.11;MQRankSum=0.464;QD=14.10;ReadPosRankSum=-1.087;SOR=3.383;set=HC	GT:AD:AF:DP	1/2:8,43,16:0.64,0.24:67
chr5	148384328	rs140985600	G	A	1202.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:90,60:0.40:150
chr5	148407708	rs1432794	A	C	8110.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr5	148425518	rs250676	A	T	3034.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:147,166:0.53:313
chr5	148521799	rs11744532	T	C	517.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:18,20:0.53:38
chr5	148562890	rs6886262	G	A	1321.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:71,59:0.45:130
chr5	148562981	rs6887628	C	A	4052.77	.	AC=1;AF=0.500;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	0/1:227,198:0.47:425
chr5	148578566	rs2068262	C	T	1591.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:83,69:0.45:152
chr5	148578636	rs13362048	T	C	4636.77	.	AC=1;AF=0.500;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	0/1:211,223:0.51:434
chr5	148580025	rs6580602	G	A	1402.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:73,62:0.46:135
chr5	148586451	rs5872113	A	AG	1202.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr5	148590423	rs2918281	T	C	1567.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:80,73:0.48:153
chr5	148596693	rs3839234	TG	T	4385.73	.	AC=1;AF=0.500;AN=2;DB;DP=269;MQ=60.04;set=Intersection	GT:AD:AF:DP	0/1:115,140:0.55:255
chr5	148610276	rs2918265	C	A	3436.77	.	AC=1;AF=0.500;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	0/1:191,162:0.46:353
chr5	148618708	rs58203769	A	G	1071.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:58,45:0.44:103
chr5	148618749	rs59032271	C	T	3380.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.426;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=1.213;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.32;ReadPosRankSum=-0.482;SOR=0.824;set=HC	GT:AD:AF:DP	0/1:88,87:0.50:175
chr5	148618752	rs59757169	G	A	3420.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.148;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=1.829;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.20;ReadPosRankSum=0.720;SOR=0.851;set=HC	GT:AD:AF:DP	0/1:96,92:0.49:188
chr5	148618964	rs34180939	G	A	1205.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:48,56:0.54:104
chr5	148619189	rs11326264	AG	A	2011.73	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:91,82:0.47:173
chr5	148620224	rs3797315	T	G	5444.77	.	AC=1;AF=0.500;AN=2;DB;DP=579;set=Intersection	GT:AD:AF:DP	0/1:305,264:0.46:569
chr5	148620451	rs45498700	C	T	1127.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:39,45:0.54:84
chr5	148625972	rs34340554	TA	T	1106.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.216;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=0.663;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=1.857;QD=8.26;ReadPosRankSum=0.880;SOR=0.605;set=HC	GT:AD:AF:DP	0/1:61,73:0.54:134
chr5	148627054	rs10035236	G	A	392.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:13,16:0.55:29
chr5	148627252	rs9325136	G	A	3545.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:152,159:0.51:311
chr5	148627503	rs2304609	C	T	1461.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:48,59:0.55:107
chr5	148630191	rs1808828	C	A	578.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:30,26:0.46:56
chr5	148639062	rs1438688	C	T	980.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:59,49:0.45:108
chr5	148651711	rs12054749	T	C	490.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:17,23:0.57:40
chr5	148679301	rs171286	C	G	10852.77	.	AC=2;AF=1.00;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	1/1:0,396:1.00:396
chr5	148682188	rs352341	G	C	3557.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr5	148712150	rs2270682	G	A	389.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:15,17:0.53:32
chr5	148725199	rs352347	A	G	1741.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:76,79:0.51:155
chr5	148725225	rs3842046	G	GC	1596.73	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:46,52:0.53:98
chr5	148737644	rs2291814	G	C	64.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:14,5:0.26:19
chr5	148742693	rs1693917	A	G	468.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:15,20:0.57:35
chr5	148747902	rs4705336	G	C	13009.77	.	AC=1;AF=0.500;AN=2;DB;DP=1346;set=Intersection	GT:AD:AF:DP	0/1:688,642:0.48:1330
chr5	148884874	.	CT	C	62.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.623;ClippingRankSum=0.000;DP=136;ExcessHet=3.0103;FS=3.751;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.49;ReadPosRankSum=1.558;SOR=0.299;set=HC	GT:AD:AF:DP	0/1:102,26:0.20:128
chr5	148989122	rs2400891	C	T	3232.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr5	148989312	rs7443869	A	G	455.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.43;SOR=3.442;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr5	148989320	rs7447560	T	C	421.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.18;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	148997686	rs6579750	A	G	24639.77	.	AC=2;AF=1.00;AN=2;DB;DP=958;set=Intersection	GT:AD:AF:DP	1/1:4,938:1.00:942
chr5	149003626	rs113997100	G	A	6916.77	.	AC=1;AF=0.500;AN=2;DB;DP=580;set=Intersection	GT:AD:AF:DP	0/1:243,326:0.57:569
chr5	149006518	rs147615867	TCAGTGG	T	3203.73	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr5	149006640	rs9324624	C	T	10345.77	.	AC=2;AF=1.00;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	1/1:0,375:1.00:375
chr5	149006837	rs7732873	A	G	5212.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr5	149006879	rs7733002	A	G	2254.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr5	149008403	rs1056993	A	G	3331.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr5	149008521	rs1135093	A	G	1345.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr5	149112300	rs41287082	T	G	820.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:34,42:0.55:76
chr5	149227267	.	TA	T	141.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.482;ClippingRankSum=0.000;DP=73;ExcessHet=3.0103;FS=6.299;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.67;ReadPosRankSum=1.175;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:35,18:0.34:53
chr5	149264106	rs78775072	G	A	3503.77	.	AC=1;AF=0.500;AN=2;DB;DP=394;MQ=60.05;set=Intersection	GT:AD:AF:DP	0/1:205,184:0.47:389
chr5	149265875	rs61733360	G	A	2703.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:153,134:0.47:287
chr5	149276124	rs10053292	T	C	1547.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:87,73:0.46:160
chr5	149276373	rs2244836	T	C	4976.77	.	AC=1;AF=0.500;AN=2;DB;DP=462;set=Intersection	GT:AD:AF:DP	0/1:231,227:0.50:458
chr5	149283320	rs10045697	C	T	3001.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:165,149:0.47:314
chr5	149283406	rs251346	C	G	1561.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:71,67:0.49:138
chr5	149301335	rs11167487	T	C	1144.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.595;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=1.553;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.38;ReadPosRankSum=0.961;SOR=0.883;set=HC	GT:AD:AF:DP	0/1:65,57:0.47:122
chr5	149323772	rs2277926	G	A	1645.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:60,77:0.56:137
chr5	149323906	rs2277925	T	G	2887.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:128,141:0.52:269
chr5	149360877	rs30832	T	C	17451.77	.	AC=2;AF=1.00;AN=2;DB;DP=628;set=Intersection	GT:AD:AF:DP	1/1:0,622:1.00:622
chr5	149374879	rs3832324	CT	C	15877.73	.	AC=2;AF=1.00;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	1/1:2,430:1.00:432
chr5	149374932	rs10875553	T	C	8902.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:1,333:1.00:334
chr5	149380158	rs3812008	C	T	7700.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.906;ClippingRankSum=0.000;DB;DP=844;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.19;ReadPosRankSum=0.490;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:452,386:0.46:838
chr5	149380158	.	CG	TC	2944	.	AC=1;AF=0.500;AN=2;BRF=0.47;FR=0.5000;HP=2;HapScore=1;MGOF=3;MMLQ=25;MQ=60.0;NF=118;NR=108;PP=2944;QD=20;SC=TTACTAGACCCGCTCCAAGCC;SbPval=0.5;Source=Platypus;TC=534;TCF=281;TCR=253;TR=226;WE=149380167;WS=149380148;set=Platypus	GT:AD:AF:DP	0/1:308,226:0.42:534
chr5	149380159	rs3812009	G	C	27431.77	.	AC=2;AF=1.00;AN=2;DB;DP=840;set=Intersection	GT:AD:AF:DP	1/1:2,822:1.00:824
chr5	149404179	rs35341726	G	T	2244.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:103,100:0.49:203
chr5	149406271	rs6579767	C	T	11900.77	.	AC=2;AF=1.00;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	1/1:0,441:1.00:441
chr5	149406733	rs2304069	G	T	1454.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr5	149424966	rs2276983	G	A	3042.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr5	149427387	rs2043284	T	G	5526.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr5	149428395	rs216125	C	G	840.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr5	149428424	rs216126	G	C	516.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr5	149431178	rs7718213	T	A	909.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:42,36:0.46:78
chr5	149431223	rs216131	G	A	5187.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr5	149431259	rs216132	A	G	8914.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr5	149431789	.	C	T	167.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.603;ClippingRankSum=0.000;DP=72;ExcessHet=3.0103;FS=1.691;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.33;ReadPosRankSum=1.746;SOR=0.965;set=HC	GT:AD:AF:DP	0/1:59,13:0.18:72
chr5	149433596	rs2066934	TG	GA	7572.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;JOINED;MQ=59.96;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr5	149435759	rs216136	G	A	8063.77	.	AC=1;AF=0.500;AN=2;DB;DP=775;set=Intersection	GT:AD:AF:DP	0/1:374,395:0.51:769
chr5	149437190	rs216138	C	G	6896.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr5	149439458	rs3733671	T	G	708.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:26,30:0.54:56
chr5	149440644	rs170037	C	T	2345.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:78,101:0.56:179
chr5	149441016	rs11286566	AC	A	1201.73	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:42,48:0.53:90
chr5	149447628	rs216150	A	G	1563.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr5	149447771	rs34928010	G	A	2168.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:100,105:0.51:205
chr5	149456771	rs2855781	CT	AA	16064.77	.	AC=1;AF=0.500;AN=2;DB;DP=966;JOINED;set=Intersection	GT:AD:AF:DP	0/1:526,419:0.44:945
chr5	149457678	rs2228422	G	A	12251.77	.	AC=2;AF=1.00;AN=2;DB;DP=465;set=Intersection	GT:AD:AF:DP	1/1:0,455:1.00:455
chr5	149459574	rs13188584	C	T	2333.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:114,109:0.49:223
chr5	149460553	rs216123	A	G	3318.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:134,160:0.54:294
chr5	149495287	rs2229561	G	C	244.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:12,11:0.48:23
chr5	149495395	rs246388	T	C	1048.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:47,52:0.53:99
chr5	149495600	rs138324883	T	C	413.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:18,20:0.53:38
chr5	149495629	.	AT	A	319.73	.	AC=1;AF=0.500;AN=2;DP=31;set=Intersection	GT:AD:AF:DP	0/1:17,13:0.43:30
chr5	149497099	rs67730801	GCGCGCGCGCACACA	G	225.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:21,9:0.30:30
chr5	149497107	rs28368814	G	A	132.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.467;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.31;MQRankSum=-0.535;QD=4.02;ReadPosRankSum=0.212;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:23,10:0.30:33
chr5	149497177	rs246391	T	C	823.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:71,38:0.35:109
chr5	149497228	rs2228440	G	A	2199.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:107,102:0.49:209
chr5	149498223	rs150263966	C	T	5166.77	.	AC=1;AF=0.500;AN=2;DB;DP=540;set=Intersection	GT:AD:AF:DP	0/1:279,253:0.48:532
chr5	149498497	rs5872159	C	CT	910.73	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:39,31:0.44:70
chr5	149501322	rs79566483	A	G	1225.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:34,44:0.56:78
chr5	149504115	rs1077724	A	T	658.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:24,26:0.52:50
chr5	149504158	rs1075846	T	C	891.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:36,38:0.51:74
chr5	149505306	rs10072056	G	A	416.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:24,19:0.44:43
chr5	149513072	rs2240780	A	G	1542.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr5	149515074	rs740750	G	A	3806.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:2,136:0.99:138
chr5	149516480	rs2240781	C	T	3986.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr5	149578999	rs731376	T	A	1066.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:52,47:0.47:99
chr5	149582069	rs10875556	T	C	3843.77	.	AC=1;AF=0.500;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	0/1:194,185:0.49:379
chr5	149583175	rs11749558	G	A	1595.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:114,79:0.41:193
chr5	149583300	rs2240793	T	C	9430.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.925;ClippingRankSum=0.000;DB;DP=656;ExcessHet=3.0103;FS=1.097;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=-0.910;QD=14.53;ReadPosRankSum=-1.286;SOR=0.789;set=HC	GT:AD:AF:DP	0/1:354,295:0.45:649
chr5	149583336	rs2240794	T	C	8107.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.756;ClippingRankSum=0.000;DB;DP=534;ExcessHet=3.0103;FS=1.103;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=-0.859;QD=15.38;ReadPosRankSum=0.088;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:302,225:0.43:527
chr5	149583383	rs35380195	G	GGT	680.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.378;ClippingRankSum=0.000;DB;DP=347;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=2.583;QD=4.63;ReadPosRankSum=1.043;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:101,46:0.31:147
chr5	149584197	rs17652561	G	A	2338.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:143,108:0.43:251
chr5	149584341	rs6878880	T	C	4246.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr5	149584863	rs2342283	A	G	2221.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.27;SOR=3.958;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr5	149584870	rs4423986	C	A	2536.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.30;SOR=3.690;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr5	149584881	rs5024534	G	T	2871.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.58;SOR=3.947;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr5	149584881	.	GTT	TTC	1498	.	AC=2;AF=1.00;AN=2;BRF=0.32;FR=1.0000;HP=2;HapScore=1;MGOF=91;MMLQ=24;MQ=60.0;NF=52;NR=6;PP=1498;QD=26.7494461183;SC=CCACTTCAGGGTTCGGTACAG;SbPval=0.64;Source=Platypus;TC=61;TCF=54;TCR=7;TR=58;WE=149584891;WS=149584853;set=Platypus	GT:AD:AF:DP	1/1:3,58:0.95:61
chr5	149584883	rs5024533	T	C	2870.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.50;SOR=3.784;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr5	149584969	rs11428067	A	AG	10500.73	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr5	149585025	rs4705426	A	C	13776.77	.	AC=2;AF=1.00;AN=2;DB;DP=515;set=Intersection	GT:AD:AF:DP	1/1:0,509:1.00:509
chr5	149596955	rs980272	C	T	225.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:25,11:0.31:36
chr5	149597160	rs882354	A	G	3222.77	.	AC=1;AF=0.500;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	0/1:205,162:0.44:367
chr5	149597304	rs5872169	G	GT	1079.73	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:35,34:0.49:69
chr5	149602280	rs55976097	T	C	2484.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:118,107:0.48:225
chr5	149602608	rs2241694	A	G	17398.77	.	AC=2;AF=1.00;AN=2;DB;DP=657;set=Intersection	GT:AD:AF:DP	1/1:0,650:1.00:650
chr5	149602824	rs2241695	C	T	2134.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:96,90:0.48:186
chr5	149610967	rs139987809	AAATAAT	A,AAAT	3088.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.794;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.05;MQRankSum=0.345;QD=32.51;ReadPosRankSum=-0.590;SOR=0.957;set=HC	GT:AD:AF:DP	1/2:8,51,36:0.54,0.38:95
chr5	149624901	rs34649296	G	GCCT	753.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.136;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.271;QD=9.79;ReadPosRankSum=1.549;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:51,26:0.34:77
chr5	149627423	rs7711562	A	G	1349.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:72,63:0.47:135
chr5	149629683	rs4958452	T	C	1451.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:51,65:0.56:116
chr5	149631413	rs2288799	A	G	2182.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:115,99:0.46:214
chr5	149636073	rs10463293	T	G	521.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:12,20:0.62:32
chr5	149636109	rs10463294	G	A	783.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:23,33:0.59:56
chr5	149644597	rs891938	T	G	19953.77	.	AC=2;AF=1.00;AN=2;DB;DP=735;set=Intersection	GT:AD:AF:DP	1/1:0,732:1.00:732
chr5	149677851	rs6579784	A	G	12804.77	.	AC=2;AF=1.00;AN=2;DB;DP=489;set=Intersection	GT:AD:AF:DP	1/1:2,475:1.00:477
chr5	149737221	rs4565199	T	G	1272.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:1,44:0.98:45
chr5	149771286	rs11742769	C	T	1002.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:58,43:0.43:101
chr5	149772856	.	C	A	745.77	.	AC=1;AF=0.500;AN=2;DP=81;set=Intersection	GT:AD:AF:DP	0/1:42,33:0.44:75
chr5	149781627	rs1056400	T	C	3474.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:144,152:0.51:296
chr5	149784414	rs11749903	C	T	1996.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:87,90:0.51:177
chr5	149792113	rs11739355	G	A	615.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:31,26:0.46:57
chr5	149792135	rs11739357	G	A	853.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:52,36:0.41:88
chr5	149823785	rs2070844	G	A	779.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:28,32:0.53:60
chr5	149824067	rs2073472	T	C	2671.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:115,124:0.52:239
chr5	149824223	rs2070842	T	C	3770.77	.	AC=1;AF=0.500;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	0/1:203,183:0.47:386
chr5	149824308	rs36146597	G	GC	2163.73	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:75,71:0.49:146
chr5	149824355	rs13171800	G	A	596.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:36,26:0.42:62
chr5	149826526	rs4841	C	T	7076.77	.	AC=1;AF=0.500;AN=2;DB;DP=705;set=Intersection	GT:AD:AF:DP	0/1:368,334:0.48:702
chr5	149826572	rs13183077	G	A	4923.77	.	AC=1;AF=0.500;AN=2;DB;DP=513;set=Intersection	GT:AD:AF:DP	0/1:264,246:0.48:510
chr5	149919778	rs61732050	G	A	3408.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:156,161:0.51:317
chr5	149931222	rs6579792	T	G	826.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr5	150051958	rs194134	T	C	24302.77	.	AC=2;AF=1.00;AN=2;DB;DP=891;set=Intersection	GT:AD:AF:DP	1/1:0,888:1.00:888
chr5	150072693	rs33410	A	G	642.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:29,30:0.51:59
chr5	150311622	rs12656542	A	G	2158.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:61,82:0.57:143
chr5	150311678	rs11167525	A	G	4577.77	.	AC=1;AF=0.500;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	0/1:189,226:0.54:415
chr5	150311773	rs7727919	T	C	7337.77	.	AC=1;AF=0.500;AN=2;DB;DP=730;MQ=60.06;set=Intersection	GT:AD:AF:DP	0/1:375,352:0.48:727
chr5	150311857	rs10719367	CT	C	3712.73	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:162,116:0.42:278
chr5	150323530	rs112582282	GTGGGAGAAGGTCGTGA	G	1612.73	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:54,45:0.45:99
chr5	150407456	rs8177447	T	C	11696.77	.	AC=2;AF=1.00;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	1/1:0,431:1.00:431
chr5	150410135	rs3924	G	A	1920.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr5	150413406	rs2233305	A	C	1993.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr5	150415338	rs2287720	C	T	3976.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr5	150425467	rs2233299	G	A	5483.77	.	AC=1;AF=0.500;AN=2;DB;DP=596;set=Intersection	GT:AD:AF:DP	0/1:309,275:0.47:584
chr5	150429563	rs2233294	A	C	3831.77	.	AC=1;AF=0.500;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	0/1:219,181:0.45:400
chr5	150489390	rs1133202	A	G	4732.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr5	150498981	rs2303022	C	G	1738.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:89,86:0.49:175
chr5	150499080	rs2303023	T	C	1721.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr5	150499102	rs2303024	A	G	1290.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr5	150502612	rs41290567	G	A	9118.77	.	AC=1;AF=0.500;AN=2;DB;DP=800;set=Intersection	GT:AD:AF:DP	0/1:369,427:0.54:796
chr5	150503784	rs2303027	C	T	1796.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:90,81:0.47:171
chr5	150504097	rs56708608	TGAGAGAGAGA	T	1107.73	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:39,33:0.46:72
chr5	150506104	rs111270752	AACACACACAC	A,AACACACACACAC	1347.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.37;MQRankSum=0.523;QD=32.09;ReadPosRankSum=-1.149;SOR=1.007;set=HC	GT:AD:AF:DP	1/2:4,31,7:0.74,0.17:42
chr5	150508875	rs2303031	A	G	478.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:19,20:0.51:39
chr5	150509258	rs144537590	T	TTTTG	203.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:11,7:0.39:18
chr5	150509262	.	G	GTTTGTTTA	360.73	.	AC=1;AF=0.500;AN=2;DP=26;set=Intersection	GT:AD:AF:DP	0/1:10,11:0.52:21
chr5	150512182	rs76400787	G	A	1591.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:57,68:0.54:125
chr5	150512589	rs146823252	G	GAAAAT	6140.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.520;ClippingRankSum=0.000;DB;DP=366;ExcessHet=3.0103;FS=1.314;MLEAC=1;MLEAF=0.500;MQ=61.26;MQRankSum=4.909;QD=16.92;ReadPosRankSum=1.307;SOR=0.794;set=HC	GT:AD:AF:DP	0/1:190,173:0.48:363
chr5	150516887	rs2303034	G	C	399.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:48,25:0.34:73
chr5	150518358	rs3213802	AG	GA	9045.77	.	AC=1;AF=0.500;AN=2;DB;DP=492;JOINED;set=Intersection	GT:AD:AF:DP	0/1:252,237:0.48:489
chr5	150519670	rs10040510	T	A	2214.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:116,111:0.49:227
chr5	150562526	rs13184280	A	C	1251.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:77,57:0.43:134
chr5	150564975	rs248428	T	C	2445.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:141,120:0.46:261
chr5	150565008	rs248427	C	T	2836.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:178,144:0.45:322
chr5	150565724	rs248426	C	T	2566.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:126,119:0.49:245
chr5	150565770	rs193728	G	A	1800.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:86,83:0.49:169
chr5	150567049	rs35221501	CA	C	3271.73	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:91,106:0.54:197
chr5	150567074	rs36036156	T	TG	2679.73	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:69,85:0.55:154
chr5	150567145	rs454130	G	A	523.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:30,24:0.44:54
chr5	150578574	rs3734038	A	G	4483.77	.	AC=1;AF=0.500;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	0/1:212,221:0.51:433
chr5	150592191	rs13183776	C	T	648.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:27,33:0.55:60
chr5	150592481	rs12655234	G	A	816.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:33,36:0.52:69
chr5	150595073	rs979453	A	G	331.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:15,13:0.46:28
chr5	150603444	rs248461	C	G	3842.77	.	AC=1;AF=0.500;AN=2;DB;DP=497;set=Intersection	GT:AD:AF:DP	0/1:285,208:0.42:493
chr5	150632676	rs2277028	A	G	533.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:42,23:0.35:65
chr5	150639409	rs153477	A	G	4459.77	.	AC=1;AF=0.500;AN=2;DB;DP=548;set=Intersection	GT:AD:AF:DP	0/1:307,237:0.44:544
chr5	150639439	rs153478	A	G	4916.77	.	AC=1;AF=0.500;AN=2;DB;DP=558;set=Intersection	GT:AD:AF:DP	0/1:298,255:0.46:553
chr5	150647239	rs989	A	G	385.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:15,17:0.53:32
chr5	150696447	rs369907	C	T	2475.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:161,125:0.44:286
chr5	150696498	rs428064	G	A	1487.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:93,71:0.43:164
chr5	150696540	rs431240	C	T	1342.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:66,61:0.48:127
chr5	150704758	rs246496	A	G	80.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:21,7:0.25:28
chr5	150715220	.	C	A	250.77	.	AC=1;AF=0.500;AN=2;DP=37;set=Intersection	GT:AD:AF:DP	0/1:24,12:0.33:36
chr5	150722675	rs2431079	G	A	1093.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:53,50:0.49:103
chr5	150723806	rs192192	G	A	4796.77	.	AC=1;AF=0.500;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	0/1:225,231:0.51:456
chr5	150838284	rs35256722	C	G	1067.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.845;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=0.881;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.68;ReadPosRankSum=0.737;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:49,51:0.51:100
chr5	150838293	rs35074529	T	C	4300.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.97;SOR=1.831;set=HC	GT:AD:AF:DP	1/1:0,123:1.00:123
chr5	150843996	rs415426	T	C	5007.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:2,179:0.99:181
chr5	150846880	rs200196527	AAC	A	462.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.471;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=5.477;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.90;ReadPosRankSum=1.365;SOR=1.021;set=HC	GT:AD:AF:DP	0/1:27,25:0.48:52
chr5	150846935	rs357619	A	T	288.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:9,14:0.61:23
chr5	150847505	rs441652	T	C	5956.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.768;ClippingRankSum=0.000;DB;DP=364;ExcessHet=3.0103;FS=1.257;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=-1.880;QD=16.59;ReadPosRankSum=-0.601;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:194,165:0.46:359
chr5	150847509	rs394736	A	G	5896.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.185;ClippingRankSum=0.000;DB;DP=331;ExcessHet=3.0103;FS=0.850;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=-2.397;QD=18.03;ReadPosRankSum=-1.723;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:174,153:0.47:327
chr5	150847554	rs357621	T	C	1261.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.088;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=5.077;MLEAC=1;MLEAF=0.500;MQ=58.81;MQRankSum=-4.969;QD=8.95;ReadPosRankSum=-0.151;SOR=1.103;set=HC	GT:AD:AF:DP	0/1:75,66:0.47:141
chr5	150847604	rs189615	A	G	583.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:24,25:0.51:49
chr5	150848653	rs10709981	TA	T	1950.73	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:122,138:0.53:260
chr5	150848701	rs357624	A	G	4738.77	.	AC=1;AF=0.500;AN=2;DB;DP=519;set=Intersection	GT:AD:AF:DP	0/1:272,243:0.47:515
chr5	150848874	rs357625	A	G	1887.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:89,85:0.49:174
chr5	150848903	rs357626	A	G	940.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:45,38:0.46:83
chr5	150853193	rs11279332	CTTTTGCTTTG	C	3028.73	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:90,80:0.47:170
chr5	150853412	rs152722	G	C	691.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:56,34:0.38:90
chr5	150856107	rs165352	T	G	4475.77	.	AC=1;AF=0.500;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	0/1:211,221:0.51:432
chr5	150858725	rs165357	G	A	513.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:18,20:0.53:38
chr5	150886616	rs7723079	G	A	2340.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:91,106:0.54:197
chr5	150886725	rs7723266	G	A	6383.77	.	AC=1;AF=0.500;AN=2;DB;DP=641;set=Intersection	GT:AD:AF:DP	0/1:308,316:0.51:624
chr5	150886882	rs1105168	G	A	4644.77	.	AC=1;AF=0.500;AN=2;DB;DP=439;set=Intersection	GT:AD:AF:DP	0/1:220,207:0.48:427
chr5	150887184	rs75548276	G	GAGA	2119.73	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:101,61:0.38:162
chr5	150889805	rs6870300	A	T	1169.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:63,56:0.47:119
chr5	150891663	rs6862750	T	C	991.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:28,39:0.58:67
chr5	150891733	rs2304028	A	G	1854.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:84,88:0.51:172
chr5	150901111	rs3822699	A	G	11074.77	.	AC=1;AF=0.500;AN=2;DB;DP=1101;set=Intersection	GT:AD:AF:DP	0/1:544,542:0.50:1086
chr5	150901261	rs6650971	C	T	7681.77	.	AC=1;AF=0.500;AN=2;DB;DP=676;set=Intersection	GT:AD:AF:DP	0/1:307,353:0.53:660
chr5	150901300	rs3734046	G	A	7215.77	.	AC=1;AF=0.500;AN=2;DB;DP=678;set=Intersection	GT:AD:AF:DP	0/1:321,343:0.52:664
chr5	150901613	rs2053028	A	G	1973.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:93,94:0.50:187
chr5	150907819	rs11743288	T	C	362.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:19,18:0.49:37
chr5	150914184	rs1432643	A	T	3444.77	.	AC=1;AF=0.500;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	0/1:203,170:0.46:373
chr5	150917545	rs3816007	G	A	2127.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:126,100:0.44:226
chr5	150921904	.	T	C	2556.77	.	AC=1;AF=0.500;AN=2;DP=265;set=Intersection	GT:AD:AF:DP	0/1:143,121:0.46:264
chr5	150923405	rs6892335	A	G	7575.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr5	150925144	rs3797875	A	G	3068.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:159,149:0.48:308
chr5	150931082	rs55719915	C	G	2247.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:81,98:0.55:179
chr5	150942919	rs6872614	A	G	5471.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr5	150946966	rs1465690	G	A	12772.77	.	AC=2;AF=1.00;AN=2;DB;DP=460;set=Intersection	GT:AD:AF:DP	1/1:0,456:1.00:456
chr5	150948537	rs1469680	T	C	1262.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr5	151169791	rs372889235	CA	C	95.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.359;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=6.761;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.09;ReadPosRankSum=1.567;SOR=0.111;set=HC	GT:AD:AF:DP	0/1:18,13:0.42:31
chr5	151170420	.	GATT	G	33	.	AC=1;AF=0.500;AN=2;BRF=0.09;FR=0.5000;HP=2;HapScore=1;MGOF=2;MMLQ=25;MQ=60.43;NF=3;NR=0;PP=33;QD=14.6666666667;SC=ATTCTCAGTTGATTATTATTA;SbPval=1.0;Source=Platypus;TC=20;TCF=19;TCR=1;TR=3;WE=151170430;WS=151170410;set=Platypus	GT:AD:AF:DP	0/1:17,3:0.15:20
chr5	151180019	rs372020718	TA	T	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.870;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.50;ReadPosRankSum=-0.438;SOR=0.829;set=HC	GT:AD:AF:DP	0/1:56,16:0.22:72
chr5	151180451	rs200261823	AT	A	274.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.239;ClippingRankSum=0.000;DB;DP=264;ExcessHet=3.0103;FS=0.635;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=2.975;QD=1.38;ReadPosRankSum=1.184;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:144,55:0.28:199
chr5	151771817	rs1363422	C	T	4133.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr5	151784731	.	GAAA	G	53.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.475;ClippingRankSum=0.000;DP=59;ExcessHet=3.0103;FS=1.945;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.34;ReadPosRankSum=-0.440;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:33,7:0.17:40
chr5	152871788	rs3841128	T	TC	3801.73	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:165,131:0.44:296
chr5	153029852	rs35033669	ACTGT	A	1578.73	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:63,43:0.41:106
chr5	153029960	rs707176	T	C	1870.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.694;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=0.502;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.098;QD=8.82;ReadPosRankSum=0.127;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:115,97:0.46:212
chr5	153035525	rs2963944	A	G	1695.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:81,75:0.48:156
chr5	153065746	rs10035262	A	G	4720.77	.	AC=1;AF=0.500;AN=2;DB;DP=504;set=Intersection	GT:AD:AF:DP	0/1:257,242:0.48:499
chr5	153085668	rs140268951	T	TTTTGTTTGTTTG	1253.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.653;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=1.432;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.000;QD=18.17;ReadPosRankSum=-0.421;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:35,34:0.49:69
chr5	153144216	rs3813470	A	G	4840.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr5	153174310	.	G	GA	78.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.061;ClippingRankSum=0.000;DP=266;ExcessHet=3.0103;FS=0.661;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.31;ReadPosRankSum=2.061;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:219,37:0.14:256
chr5	153372525	rs1057772	G	A	3109.77	.	AC=1;AF=0.500;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	0/1:237,161:0.40:398
chr5	153372743	rs6866471	G	A	887.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:46,39:0.46:85
chr5	153382072	rs35082504	GTCT	G	855.73	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:22,23:0.51:45
chr5	153406644	rs9324765	C	T	723.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:28,31:0.53:59
chr5	153406987	rs6889563	G	C	1066.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:37,42:0.53:79
chr5	153413390	rs2578377	C	T	2584.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:133,127:0.49:260
chr5	153414545	rs34907432	C	CA	1035.73	.	AC=1;AF=0.500;AN=2;DB;DP=137;MQ=60.08;set=Intersection	GT:AD:AF:DP	0/1:60,59:0.50:119
chr5	153429459	rs690592	T	C	4612.77	.	AC=1;AF=0.500;AN=2;DB;DP=520;set=Intersection	GT:AD:AF:DP	0/1:273,230:0.46:503
chr5	153432450	rs11451300	A	AT	2074.73	.	AC=1;AF=0.500;AN=2;DB;DP=285;MQ=60.15;set=Intersection	GT:AD:AF:DP	0/1:150,130:0.46:280
chr5	153432733	rs2578386	T	C	6321.77	.	AC=1;AF=0.500;AN=2;DB;DP=536;set=Intersection	GT:AD:AF:DP	0/1:243,282:0.54:525
chr5	153432970	rs2255493	C	T	4058.77	.	AC=1;AF=0.500;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	0/1:189,186:0.50:375
chr5	153570349	rs201222592	C	CCGGGCGGA	322.73	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr5	153674536	rs376302156	TTGTGTG	T	1248.73	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:33,42:0.56:75
chr5	153677361	.	TGA	T	555.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.679;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;FS=2.730;MLEAC=1;MLEAF=0.500;MQ=63.17;MQRankSum=5.589;QD=13.89;ReadPosRankSum=-0.320;SOR=1.445;set=HC	GT:AD:AF:DP	0/1:26,14:0.35:40
chr5	153677362	.	GA	TC	1344	.	AC=1;AF=0.500;AN=2;BRF=0.26;FR=0.5000;HP=1;HapScore=2;MGOF=1;MMLQ=28;MQ=62.5;NF=12;NR=0;PP=1344;QD=116.455656239;SC=TCTTTGTACTGAGCAAAAACT;SbPval=1.0;Source=Platypus;TC=39;TCF=37;TCR=2;TR=12;WE=153677371;WS=153677352;set=Platypus	GT:AD:AF:DP	0/1:27,12:0.31:39
chr5	153677363	.	A	ATCCCCCT,ACCCCT	555.73	.	AC=1,0;AF=0.500,0.00;ALERT;AN=2;DP=40;set=Intersection	GT:AF:DP	0/1:0.35:40
chr5	153709043	rs1004976	G	A	3407.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:100,140:0.58:240
chr5	153726929	.	A	AT	121.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.139;ClippingRankSum=0.000;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.21;ReadPosRankSum=-0.479;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:40,15:0.27:55
chr5	153783587	rs4958733	A	G	4028.77	.	AC=1;AF=0.500;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	0/1:196,203:0.51:399
chr5	153783753	rs6580076	C	T	2382.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:125,113:0.47:238
chr5	153788991	rs2112605	G	C	4606.77	.	AC=1;AF=0.500;AN=2;DB;DP=505;set=Intersection	GT:AD:AF:DP	0/1:275,226:0.45:501
chr5	153789078	rs6580077	C	G	6241.77	.	AC=1;AF=0.500;AN=2;DB;DP=603;set=Intersection	GT:AD:AF:DP	0/1:294,303:0.51:597
chr5	153792490	rs35448914	C	T	5163.77	.	AC=1;AF=0.500;AN=2;DB;DP=491;set=Intersection	GT:AD:AF:DP	0/1:239,247:0.51:486
chr5	153795209	rs11167678	C	G	908.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:36,42:0.54:78
chr5	153795274	rs11321246	TA	T	1563.73	.	AC=1;AF=0.500;AN=2;DB;DP=172;MQ=60.13;set=Intersection	GT:AD:AF:DP	0/1:74,95:0.56:169
chr5	153835378	rs1007404	C	G	3312.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:140,159:0.53:299
chr5	153856974	rs1846966	C	G	3874.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:137,170:0.55:307
chr5	154065382	rs33982250	TA	T	1722.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.937;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=3.162;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.44;ReadPosRankSum=0.835;SOR=0.993;set=HC	GT:AD:AF:DP	0/1:50,115:0.70:165
chr5	154065383	rs75538180	A	T	66.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.492;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=2.959;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.40;ReadPosRankSum=-1.179;SOR=0.408;set=HC	GT:AD:AF:DP	0/1:139,26:0.16:165
chr5	154065495	rs11958012	G	A	4590.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.410;ClippingRankSum=0.000;DB;DP=489;ExcessHet=3.0103;FS=1.095;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.52;ReadPosRankSum=0.541;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:247,235:0.49:482
chr5	154065495	.	GG	AC	1702	.	AC=1;AF=0.500;AN=2;BRF=0.47;FR=0.5000;HP=1;HapScore=1;MGOF=12;MMLQ=21;MQ=59.96;NF=66;NR=71;PP=1702;QD=12.8136341231;SC=CTCGTGATTCGGTTAATCCTC;SbPval=0.54;Source=Platypus;TC=297;TCF=143;TCR=154;TR=137;WE=154065504;WS=154065485;set=Platypus	GT:AD:AF:DP	1/0:160,137:0.46:297
chr5	154065496	rs4958759	G	C	17102.77	.	AC=2;AF=1.00;AN=2;DB;DP=488;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.56;SOR=0.748;set=HC	GT:AD:AF:DP	1/1:0,481:1.00:481
chr5	154134818	rs11416035	C	CG	311.74	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.64;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr5	154135652	rs191985333	G	A	3921.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.137;ClippingRankSum=0.000;DB;DP=328;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.18;ReadPosRankSum=0.762;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:142,180:0.56:322
chr5	154183957	rs3216148	GA	G	1242.73	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:24,33:0.58:57
chr5	154183961	rs2298748	A	T	1251.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:24,34:0.59:58
chr5	154193735	rs863649	A	G	4544.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr5	154217840	rs112016466	G	GA	142.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.145;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.686;QD=1.83;ReadPosRankSum=-1.541;SOR=0.649;set=HC	GT:AD:AF:DP	0/1:59,19:0.24:78
chr5	154247297	rs35471086	TAA	T	2088.73	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:52,56:0.52:108
chr5	154268902	rs816739	C	T	8688.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chr5	154271391	rs702743	A	C	5343.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr5	154271948	rs816736	G	A	13184.77	.	AC=2;AF=1.00;AN=2;DB;DP=506;set=Intersection	GT:AD:AF:DP	1/1:0,489:1.00:489
chr5	154275962	rs816747	G	A	407.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:10,16:0.62:26
chr5	154278888	rs816740	C	T	7727.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr5	154282551	rs10515726	T	C	2938.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:117,133:0.53:250
chr5	154287016	rs76813157	T	TGAAAAAAAA	1264.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr5	154287115	rs6580119	T	C	6411.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr5	154291219	rs6580121	A	G	3075.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr5	154291409	rs1974777	C	T	9393.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;MQ=60.03;set=Intersection	GT:AD:AF:DP	1/1:0,350:1.00:350
chr5	154291496	rs1974776	G	A	3472.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr5	154296795	rs348735	A	C	708.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:31,27:0.47:58
chr5	154300940	rs348739	A	C	6387.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:3,251:0.99:254
chr5	154306972	rs2258437	T	C	4694.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr5	154308282	rs2644743	C	T	3778.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr5	154308307	rs1035368	G	A	2827.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr5	154311235	rs2644744	T	C	2632.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr5	154311576	rs2544866	T	C	1212.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.88;SOR=1.721;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr5	154315354	rs13182236	G	A	2604.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:108,117:0.52:225
chr5	155771773	rs4434364	A	G	1367.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:60,61:0.50:121
chr5	155935512	rs71577199	TA	T	134.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.427;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.61;ReadPosRankSum=-0.465;SOR=1.739;set=HC	GT:AD:AF:DP	0/1:12,12:0.50:24
chr5	156074654	rs141437738	TAAATTGA	T	1234.73	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:34,33:0.49:67
chr5	156376462	.	TCCTTC	T	122.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.268;ClippingRankSum=0.000;DP=51;ExcessHet=3.0103;FS=3.270;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.99;ReadPosRankSum=4.727;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:32,9:0.22:41
chr5	156376703	rs6873053	A	G	4703.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr5	156381370	rs7724832	G	A	2883.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr5	156381895	.	C	CT	93.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.396;ClippingRankSum=0.000;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.00;ReadPosRankSum=-0.259;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:76,18:0.19:94
chr5	156390297	rs6882076	T	C	9812.77	.	AC=2;AF=1.00;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	1/1:0,353:1.00:353
chr5	156464212	rs4704837	T	G	4378.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr5	156469452	rs70984428	CA	C	156.92	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.286;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.26;ReadPosRankSum=0.281;SOR=0.352;set=HC	GT:AD:AF:DP	0/1:3,16:0.84:19
chr5	156479323	rs1553318	G	C	4726.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr5	156479424	rs1553317	A	C	18723.77	.	AC=2;AF=1.00;AN=2;DB;DP=687;set=Intersection	GT:AD:AF:DP	1/1:0,684:1.00:684
chr5	156479509	rs1553316	A	G	26981.77	.	AC=2;AF=1.00;AN=2;DB;DP=1030;set=Intersection	GT:AD:AF:DP	1/1:1,1023:1.00:1024
chr5	156479557	rs141023871	GTTGGAACAGTCGTCA	G	20124.73	.	AC=2;AF=1.00;AN=2;DB;DP=897;set=Intersection	GT:AD:AF:DP	1/1:2,747:1.00:749
chr5	156482099	rs2270925	T	C	2063.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.86;SOR=2.461;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr5	156482099	.	TTA	CTT	1627	.	AC=2;AF=1.00;AN=2;BRF=0.49;FR=1.0000;HP=2;HapScore=1;MGOF=2;MMLQ=28;MQ=60.0;NF=28;NR=6;PP=1627;QD=49.4255257312;SC=GAACAAGAGTTTATTTAAAAA;SbPval=0.53;Source=Platypus;TC=35;TCF=29;TCR=6;TR=34;WE=156482109;WS=156482089;set=Platypus	GT:AD:AF:DP	1/1:1,34:0.97:35
chr5	156482101	rs2270924	A	T	2063.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.12;SOR=2.256;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr5	156482459	rs1809941	G	T	8718.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,329:1.00:329
chr5	156525920	rs371359315	AAG	A	470.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.353;ClippingRankSum=0.000;DB;DP=242;ExcessHet=3.0103;FS=2.719;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=0.000;QD=2.57;ReadPosRankSum=-1.311;SOR=0.444;set=HC	GT:AD:AF:DP	0/1:148,35:0.19:183
chr5	156531561	rs2902306	C	T	2400.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr5	156531736	rs1036199	C	A	3139.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr5	156531865	rs1036200	A	G	712.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr5	156644775	rs5872504	T	TC	6873.73	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr5	156650072	rs34124871	A	G	777.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:18,31:0.63:49
chr5	156655400	rs35936741	T	C	999.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:61,50:0.45:111
chr5	156659466	rs78796115	T	C	796.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:28,36:0.56:64
chr5	156659494	rs13164045	A	G	575.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:19,25:0.57:44
chr5	156665106	rs56100638	C	T	3332.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.081;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=5.757;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.08;ReadPosRankSum=0.477;SOR=1.123;set=HC	GT:AD:AF:DP	0/1:80,86:0.52:166
chr5	156665109	rs55646940	A	T	3419.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.208;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=4.481;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.43;ReadPosRankSum=0.399;SOR=1.019;set=HC	GT:AD:AF:DP	0/1:84,92:0.52:176
chr5	156665266	rs34064633	A	T	3890.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.587;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=1.090;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.98;ReadPosRankSum=-0.080;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:104,101:0.49:205
chr5	156665266	.	AAA	TAC	2512	.	AC=1;AF=0.500;AN=2;BRF=0.39;FR=0.5000;HP=4;HapScore=2;MGOF=0;MMLQ=28;MQ=60.0;NF=25;NR=39;PP=2512;QD=20;SC=AGCACTGGGGAAAAGACAACA;SbPval=0.63;Source=Platypus;TC=142;TCF=59;TCR=83;TR=64;WE=156665276;WS=156665256;set=Platypus	GT:AD:AF:DP	0/1:78,64:0.45:142
chr5	156665268	rs34184802	A	C	3890.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.810;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=1.086;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.07;ReadPosRankSum=-0.465;SOR=0.781;set=HC	GT:AD:AF:DP	0/1:103,101:0.50:204
chr5	156670916	rs66943334	C	T	368.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:29,18:0.38:47
chr5	156672719	rs13156643	G	A	2228.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:109,106:0.49:215
chr5	156679576	rs27341	T	C	12000.77	.	AC=2;AF=1.00;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	1/1:0,450:1.00:450
chr5	156721863	rs5872508	T	TC	11740.73	.	AC=2;AF=1.00;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	1/1:0,353:1.00:353
chr5	156721986	rs7724099	C	A	2996.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:161,148:0.48:309
chr5	156723913	rs1600014	T	C	380.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:8,14:0.64:22
chr5	156734632	rs529619	G	A	210.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:29,10:0.26:39
chr5	156734644	.	G	GGTGTGT	378.73	.	AC=1;AF=0.500;AN=2;DP=53;set=Intersection	GT:AD:AF:DP	0/1:36,13:0.27:49
chr5	156738830	rs393178	G	C	3823.77	.	AC=1;AF=0.500;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	0/1:187,188:0.50:375
chr5	156741583	rs895309	A	G	517.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:15,19:0.56:34
chr5	156742186	rs6897056	G	A	519.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:26,21:0.45:47
chr5	156747584	rs7730231	C	T	1988.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:138,96:0.41:234
chr5	156747614	rs6555939	G	T	2851.77	.	AC=1;AF=0.500;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	0/1:217,156:0.42:373
chr5	156747632	rs2863198	C	G	3982.77	.	AC=1;AF=0.500;AN=2;DB;DP=465;set=Intersection	GT:AD:AF:DP	0/1:257,206:0.44:463
chr5	156747669	rs1823035	A	G	5980.77	.	AC=1;AF=0.500;AN=2;DB;DP=615;set=Intersection	GT:AD:AF:DP	0/1:332,280:0.46:612
chr5	156749860	rs143886830	TTC	T	44.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.075;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=2.903;QD=0.34;ReadPosRankSum=0.070;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:116,14:0.11:130
chr5	156750834	rs34143712	G	GA	627.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.367;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=0.808;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.210;QD=5.46;ReadPosRankSum=1.844;SOR=0.538;set=HC	GT:AD:AF:DP	0/1:69,46:0.40:115
chr5	156760214	rs13181919	C	G	641.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:37,33:0.47:70
chr5	156760799	rs1900158	G	A	1120.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:56,48:0.46:104
chr5	156761070	rs12656549	C	T	2216.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:113,96:0.46:209
chr5	156762071	rs10077387	A	G	1207.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:82,56:0.41:138
chr5	156762245	rs9313545	A	G	1951.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:95,93:0.49:188
chr5	156763650	rs10036098	T	C	1583.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:45,70:0.61:115
chr5	156763684	rs10043769	C	T	2331.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:61,103:0.63:164
chr5	156763823	rs10038052	G	A	1915.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:102,92:0.47:194
chr5	156763921	rs11134699	C	A	903.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:34,45:0.57:79
chr5	156765981	rs3734026	G	A	680.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:62,36:0.37:98
chr5	156766037	rs3734027	A	G	1372.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:114,75:0.40:189
chr5	156766273	rs3734028	G	A	931.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.449;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=1.407;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.01;ReadPosRankSum=1.699;SOR=0.871;set=HC	GT:AD:AF:DP	0/1:79,54:0.41:133
chr5	156770133	rs10037485	C	T	6004.77	.	AC=1;AF=0.500;AN=2;DB;DP=619;set=Intersection	GT:AD:AF:DP	0/1:330,280:0.46:610
chr5	156770653	rs13182147	G	A	482.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:21,22:0.51:43
chr5	156770688	rs10061992	G	A	296.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:11,12:0.52:23
chr5	156887133	rs1105282	A	G	1645.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:72,78:0.52:150
chr5	156898690	rs6860507	A	G	1493.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr5	156898899	rs4704869	G	A	801.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr5	156898967	rs6879450	G	A	161.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:4,7:0.64:11
chr5	156899290	rs9313607	T	C	1951.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr5	156899869	rs4704870	T	C	18016.77	.	AC=2;AF=1.00;AN=2;DB;DP=696;set=Intersection	GT:AD:AF:DP	1/1:0,690:1.00:690
chr5	156904633	rs10404	C	T	1704.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:96,83:0.46:179
chr5	156916037	rs10674185	C	CAAAAAGAA	3746.73	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr5	156917340	rs10067096	A	C	3906.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:163,180:0.52:343
chr5	156918850	rs2287749	C	T	8395.77	.	AC=1;AF=0.500;AN=2;DB;DP=802;set=Intersection	GT:AD:AF:DP	0/1:382,401:0.51:783
chr5	156918987	rs11466790	G	A	2328.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:118,104:0.47:222
chr5	156936549	rs1422794	G	T	935.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:53,46:0.46:99
chr5	156946049	rs2042247	A	G	2361.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:87,103:0.54:190
chr5	156957741	rs3822696	C	T	585.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:26,25:0.49:51
chr5	156997785	rs11746737	C	T	3276.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:160,158:0.50:318
chr5	156999340	rs7719224	C	T	3595.77	.	AC=1;AF=0.500;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	0/1:233,183:0.44:416
chr5	157002552	rs6556092	A	G	6867.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr5	157075943	rs72284585	TAC	T	1526.73	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:69,54:0.44:123
chr5	157094771	.	TACAC	T,TAC	3927.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.631;ClippingRankSum=0.000;DP=369;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.15;MQRankSum=0.000;QD=18.35;ReadPosRankSum=-1.031;SOR=0.841;set=HC	GT:AD:AF:DP	1/2:17,128,69:0.60,0.32:214
chr5	157094779	.	C	T	1482.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.009;ClippingRankSum=0.000;DP=351;ExcessHet=3.0103;FS=0.475;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=-1.626;QD=5.15;ReadPosRankSum=4.066;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:189,99:0.34:288
chr5	157102063	rs10051782	G	A	3827.77	.	AC=1;AF=0.500;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	0/1:177,185:0.51:362
chr5	157102159	rs10051838	G	A	4776.77	.	AC=1;AF=0.500;AN=2;DB;DP=486;set=Intersection	GT:AD:AF:DP	0/1:245,232:0.49:477
chr5	157102185	rs6884959	A	G	3619.77	.	AC=1;AF=0.500;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	0/1:197,177:0.47:374
chr5	157106785	rs6556177	C	T	1762.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:125,87:0.41:212
chr5	157158326	rs2270821	G	C	634.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:33,25:0.43:58
chr5	157158372	rs2270820	T	C	1612.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:76,66:0.46:142
chr5	157158414	rs2270819	C	A	3377.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:144,149:0.51:293
chr5	157158439	rs2270818	C	A	4644.77	.	AC=1;AF=0.500;AN=2;DB;DP=444;set=Intersection	GT:AD:AF:DP	0/1:211,220:0.51:431
chr5	157164889	rs2270813	T	C	1186.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:69,56:0.45:125
chr5	157164962	rs2270812	T	C	2747.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:149,137:0.48:286
chr5	157165597	.	G	GT	358.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.421;ClippingRankSum=0.000;DP=111;ExcessHet=3.0103;FS=6.093;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.45;ReadPosRankSum=-0.303;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:68,36:0.35:104
chr5	157165832	rs33954159	C	CT	73.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.788;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.95;ReadPosRankSum=0.941;SOR=0.459;set=HC	GT:AD:AF:DP	0/1:16,9:0.36:25
chr5	157178592	rs56398160	TA	T	5623.73	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr5	157180930	rs35074350	CT	C	455.73	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:19,33:0.63:52
chr5	157180959	rs141155397	AAAT	A	1815.73	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:47,48:0.51:95
chr5	157236505	rs60217753	TA	T	106.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.583;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=7.768;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=1.521;QD=1.78;ReadPosRankSum=1.018;SOR=2.470;set=HC	GT:AD:AF:DP	0/1:42,18:0.30:60
chr5	157241367	rs140043015	TA	T	297.73	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:20,20:0.50:40
chr5	158140222	rs3734105	G	A	3754.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr5	158204425	rs1368298	A	G	3168.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:2,115:0.98:117
chr5	158511794	.	GA	G	177.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.192;ClippingRankSum=0.000;DP=288;ExcessHet=3.0103;FS=3.208;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.877;QD=0.75;ReadPosRankSum=-0.771;SOR=0.972;set=HC	GT:AD:AF:DP	0/1:187,51:0.21:238
chr5	158526534	rs5872586	TA	T	2230.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.507;ClippingRankSum=0.000;DB;DP=292;ExcessHet=3.0103;FS=2.565;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=1.418;QD=11.44;ReadPosRankSum=1.023;SOR=0.844;set=HC	GT:AD:AF:DP	0/1:31,164:0.84:195
chr5	158588633	rs139682876	GAAAAA	G	1708.73	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:27,48:0.64:75
chr5	158588749	rs17056583	G	C	297.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.301;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.93;ReadPosRankSum=0.720;SOR=0.460;set=HC	GT:AD:AF:DP	0/1:15,15:0.50:30
chr5	158603571	rs1473247	T	C	2270.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:88,105:0.54:193
chr5	158630629	.	G	GT	107.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.157;ClippingRankSum=0.000;DP=196;ExcessHet=3.0103;FS=1.022;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.82;ReadPosRankSum=-0.155;SOR=0.505;set=HC	GT:AD:AF:DP	0/1:107,24:0.18:131
chr5	158697481	rs3734104	C	G	2947.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr5	158697716	.	G	GT	74.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.557;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=9.832;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.87;ReadPosRankSum=1.133;SOR=0.042;set=HC	GT:AD:AF:DP	0/1:17,9:0.35:26
chr5	158705370	rs12520035	A	G	2331.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:113,118:0.51:231
chr5	158710419	rs1433046	C	T	610.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr5	158743788	rs3213119	C	A	1822.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:118,88:0.43:206
chr5	158743846	rs11574790	G	A	2045.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:119,105:0.47:224
chr5	158747564	rs919766	A	C	218.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:26,10:0.28:36
chr5	159478089	rs5872626	GT	G	239.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.422;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.58;ReadPosRankSum=-0.471;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:18,25:0.58:43
chr5	159505208	rs4360078	C	A	4037.77	.	AC=1;AF=0.500;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:129,181:0.58:310
chr5	159516404	rs4590210	C	G	617.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:22,27:0.55:49
chr5	159516431	rs4441910	G	C	729.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:32,35:0.52:67
chr5	159640652	rs6556482	G	A	1178.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr5	159659273	rs1130435	C	T	7087.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr5	159661723	rs2421775	C	T	2917.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr5	159665523	rs10071756	C	T	2074.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.10;SOR=4.317;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr5	159665527	rs10056227	G	A	2246.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.94;SOR=3.171;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr5	159665534	rs10079413	A	G	2436.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.01;SOR=2.468;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr5	159665599	rs2277954	G	A	4954.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr5	159665726	rs10071871	C	T	12847.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.11;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,298:1.00:298
chr5	159665733	rs2277953	C	T	12502.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.30;SOR=0.768;set=HC	GT:AD:AF:DP	1/1:0,276:1.00:276
chr5	159738709	rs6556490	A	G	1933.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.926;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.99;ReadPosRankSum=1.471;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:86,90:0.51:176
chr5	159766379	rs13360090	C	A	1991.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.58;SOR=3.300;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr5	159766380	rs61666605	A	AC	1755.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=31.35;SOR=4.804;set=HC	GT:AD:AF:DP	1/1:2,54:0.96:56
chr5	159776637	rs10053189	C	T	8083.77	.	AC=1;AF=0.500;AN=2;DB;DP=758;set=Intersection	GT:AD:AF:DP	0/1:374,374:0.50:748
chr5	159820931	rs10515808	C	A	7096.77	.	AC=1;AF=0.500;AN=2;DB;DP=722;set=Intersection	GT:AD:AF:DP	0/1:373,344:0.48:717
chr5	159831664	rs2961939	C	T	956.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:38,42:0.53:80
chr5	159831803	rs2961940	A	G	4360.77	.	AC=1;AF=0.500;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	0/1:217,209:0.49:426
chr5	159832250	rs2910182	A	G	1384.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:61,59:0.49:120
chr5	159833355	rs36082303	A	AT	747.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.226;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=1.997;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=1.061;QD=6.39;ReadPosRankSum=1.257;SOR=0.959;set=HC	GT:AD:AF:DP	0/1:61,56:0.48:117
chr5	159835658	rs2961944	A	G	1307.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:64,67:0.51:131
chr5	159839530	.	T	TA	548.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.459;ClippingRankSum=0.000;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.15;ReadPosRankSum=-1.034;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:13,19:0.59:32
chr5	159839545	rs2961948	G	A	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.254;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=5.421;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.94;ReadPosRankSum=0.126;SOR=1.478;set=HC	GT:AD:AF:DP	0/1:32,4:0.11:36
chr5	159840415	rs188587243	A	G	2010.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:70,84:0.55:154
chr5	159840688	rs2961949	T	C	1386.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:43,51:0.54:94
chr5	159841087	.	T	C	475.77	.	AC=1;AF=0.500;AN=2;DP=47;set=Intersection	GT:AD:AF:DP	0/1:28,19:0.40:47
chr5	159841493	rs79791419	A	T	376.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.032;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.69;ReadPosRankSum=2.053;SOR=0.585;set=HC	GT:AD:AF:DP	0/1:95,45:0.32:140
chr5	159842465	rs2910190	A	G	215.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:7,10:0.59:17
chr5	159849586	rs1895320	A	G	2115.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:95,83:0.47:178
chr5	159851211	rs2910203	G	C	1529.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr5	159901408	rs2961918	C	A	74.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:5,4:0.44:9
chr5	159901471	.	CCTTCAGAAAGGCTGCTGAAT	C	1067	.	AC=1;AF=0.500;AN=2;BRF=0.38;FR=0.5000;HP=2;HapScore=1;MGOF=11;MMLQ=22;MQ=58.68;NF=1;NR=5;PP=1067;QD=189.961543304;SC=CCTTTCTGAACCTTCAGAAAG;SbPval=0.88;Source=Platypus;TC=26;TCF=8;TCR=18;TR=6;WE=159901498;WS=159901461;set=Platypus	GT:AD:AF:DP	1/0:20,6:0.23:26
chr5	159901514	.	C	G	113	.	AC=1;AF=0.500;AN=2;BRF=0.44;FR=0.5000;HP=2;HapScore=2;MGOF=28;MMLQ=22;MQ=59.84;NF=5;NR=9;PP=113;QD=10.5550866105;SC=CTTTCTGAACCTTCAGAAAGG;SbPval=0.13;Source=Platypus;TC=51;TCF=29;TCR=22;TR=14;WE=159901522;WS=159901504;set=Platypus	GT:AD:AF:DP	0/1:37,14:0.27:51
chr5	159912418	rs2910164	C	G	601.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:75,35:0.32:110
chr5	160043071	rs4921308	C	A	1184.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:61,55:0.47:116
chr5	160043108	rs113179038	A	AT	2623.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:1,63:0.98:64
chr5	160043109	rs17052845	C	T	2632.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:1,64:0.98:65
chr5	160044855	rs1363199	G	A	10341.77	.	AC=2;AF=1.00;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	1/1:0,383:1.00:383
chr5	160047265	rs6862674	C	G	1446.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr5	160049355	rs2032804	C	T	794.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr5	160063134	rs34471074	G	A	317.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:22,16:0.42:38
chr5	160097429	rs3828604	T	C	5789.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr5	160097453	rs1990888	A	C	7210.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr5	160097496	rs958912	A	G	3031.77	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:180,158:0.47:338
chr5	160097632	rs958911	G	A	2579.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:1,90:0.99:91
chr5	160212520	rs13165640	G	T	1214.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:61,52:0.46:113
chr5	160212590	rs13190543	T	C	3636.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:154,168:0.52:322
chr5	160763787	rs10052441	A	G	4697.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.817;ClippingRankSum=0.000;DB;DP=583;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.21;ReadPosRankSum=0.001;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:322,250:0.44:572
chr5	160763821	.	C	CA	1895.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.927;ClippingRankSum=0.000;DP=390;ExcessHet=3.0103;FS=2.209;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.94;ReadPosRankSum=2.512;SOR=0.545;set=HC	GT:AD:AF:DP	0/1:169,150:0.47:319
chr5	160763856	rs10074714	C	T	1742.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:131,89:0.40:220
chr5	160972443	.	TAA	T,TA	1597.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.343;ClippingRankSum=0.000;DP=198;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.38;MQRankSum=1.303;QD=11.25;ReadPosRankSum=1.632;SOR=0.660;set=HC	GT:AD:AF:DP	1/2:24,49,69:0.35,0.49:142
chr5	160973808	rs370064343	TA	T	229.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.972;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=1.056;QD=5.11;ReadPosRankSum=0.682;SOR=0.202;set=HC	GT:AD:AF:DP	0/1:20,25:0.56:45
chr5	161116903	rs4921402	C	A	3785.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr5	161119071	rs12522663	G	T	14661.77	.	AC=2;AF=1.00;AN=2;DB;DP=523;set=Intersection	GT:AD:AF:DP	1/1:0,521:1.00:521
chr5	161119125	rs13184586	C	G	6439.77	.	AC=1;AF=0.500;AN=2;DB;DP=623;set=Intersection	GT:AD:AF:DP	0/1:311,306:0.50:617
chr5	161128761	rs4277944	C	G	13998.77	.	AC=2;AF=1.00;AN=2;DB;DP=518;set=Intersection	GT:AD:AF:DP	1/1:0,506:1.00:506
chr5	161302728	rs4260711	G	A	1514.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:66,68:0.51:134
chr5	161318132	rs10051659	A	G	1755.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:83,79:0.49:162
chr5	161322652	.	G	GT	121.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.120;ClippingRankSum=0.000;DP=232;ExcessHet=3.0103;FS=0.704;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.53;ReadPosRankSum=1.512;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:191,38:0.17:229
chr5	161322889	rs2279020	G	A	1974.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:100,88:0.47:188
chr5	161494990	.	GA	G	86.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.647;ClippingRankSum=0.000;DP=214;ExcessHet=3.0103;FS=7.794;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.44;ReadPosRankSum=0.586;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:159,39:0.20:198
chr5	161528280	rs211037	C	T	5066.77	.	AC=1;AF=0.500;AN=2;DB;DP=488;set=Intersection	GT:AD:AF:DP	0/1:229,245:0.52:474
chr5	161529571	rs211035	A	G	382.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:23,20:0.47:43
chr5	161576418	rs211014	C	A	4418.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr5	161579441	rs211013	A	G	3097.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr5	162884145	rs34746227	G	GT	68.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.480;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=2.907;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=1.597;QD=1.86;ReadPosRankSum=0.399;SOR=0.165;set=HC	GT:AD:AF:DP	0/1:26,11:0.30:37
chr5	162890953	rs380101	G	A	715.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr5	162891894	rs3756648	G	A	417.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	162911075	rs2230363	C	A	1120.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:25,52:0.68:77
chr5	162938940	rs11307015	GT	G	3142.73	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr5	162940739	rs964945	G	A	4031.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr5	162944709	rs7733775	A	G	9182.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:1,343:1.00:344
chr5	162945387	rs200442777	CT	C	104.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.142;ClippingRankSum=0.000;DB;DP=289;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=4.256;QD=0.46;ReadPosRankSum=0.086;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:184,45:0.20:229
chr5	167182055	rs1862875	G	A	1684.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:67,81:0.55:148
chr5	167303317	rs1862198	G	A	872.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:54,39:0.42:93
chr5	167420255	rs17069526	T	A	718.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:24,31:0.56:55
chr5	167489049	rs11411759	C	CT	608	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.789;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=0.523;QD=11.47;ReadPosRankSum=1.236;SOR=1.358;set=HC	GT:AD:AF:DP	0/1:16,37:0.70:53
chr5	167489093	rs72824988	A	T	1367.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.240;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=5.825;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=-1.000;QD=11.03;ReadPosRankSum=0.406;SOR=0.350;set=HC	GT:AD:AF:DP	0/1:61,63:0.51:124
chr5	167553880	rs10055910	C	T	4240.77	.	AC=1;AF=0.500;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	0/1:183,205:0.53:388
chr5	167554106	rs1560650	G	A	753.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:34,28:0.45:62
chr5	167566600	rs1432822	T	A	1646.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.863;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.07;ReadPosRankSum=2.128;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:117,87:0.43:204
chr5	167576513	rs35438448	T	TG	3713.73	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:111,112:0.50:223
chr5	167622107	rs1472355	G	T	2041.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:75,94:0.56:169
chr5	167625771	rs1874460	G	C	2513.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:116,114:0.50:230
chr5	167645888	rs1363560	T	C	3536.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:150,173:0.54:323
chr5	167653364	rs3733985	T	C	1796.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:70,78:0.53:148
chr5	167653394	rs3733986	A	G	999.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:39,44:0.53:83
chr5	167654788	rs11134494	G	A	848.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:42,39:0.48:81
chr5	167671781	rs139210116	CT	C	143.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.152;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.64;ReadPosRankSum=-1.740;SOR=1.230;set=HC	GT:AD:AF:DP	0/1:18,13:0.42:31
chr5	167674370	rs3733988	C	T	13644.77	.	AC=2;AF=1.00;AN=2;DB;DP=490;set=Intersection	GT:AD:AF:DP	1/1:0,485:1.00:485
chr5	167675392	rs12189266	C	T	1005.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:37,45:0.55:82
chr5	167798585	rs2287703	C	T	2182.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr5	167824840	rs10064053	T	C	1862.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:120,89:0.43:209
chr5	167835539	rs17551608	C	T	6893.77	.	AC=1;AF=0.500;AN=2;DB;DP=576;set=Intersection	GT:AD:AF:DP	0/1:255,317:0.55:572
chr5	167835766	rs6887919	T	C	1012.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:45,38:0.46:83
chr5	167858462	rs377710964	TCTGG	T	4707.73	.	AC=2;AF=1.00;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	1/1:2,175:0.99:177
chr5	167891668	rs62384143	G	A	2216.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:114,99:0.46:213
chr5	167891830	rs3203960	T	C	5156.77	.	AC=1;AF=0.500;AN=2;DB;DP=494;set=Intersection	GT:AD:AF:DP	0/1:245,243:0.50:488
chr5	167895953	rs17731898	T	C	2942.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:158,142:0.47:300
chr5	167913510	rs244903	G	A	3628.77	.	AC=1;AF=0.500;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	0/1:198,179:0.47:377
chr5	167913603	rs193466	C	T	1487.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:90,76:0.46:166
chr5	167919623	rs184957	T	A	839.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:42,40:0.49:82
chr5	167921047	rs2432642	C	G	755.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:23,32:0.58:55
chr5	167943827	rs653568	G	A	4267.77	.	AC=1;AF=0.500;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	0/1:227,206:0.48:433
chr5	167956362	rs1870053	C	G	689.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:40,36:0.47:76
chr5	167956719	rs111777993	C	A	165.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.211;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=2.392;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.75;ReadPosRankSum=1.816;SOR=0.175;set=HC	GT:AD:AF:DP	0/1:8,9:0.53:17
chr5	167957055	rs12654410	G	A	5733.77	.	AC=1;AF=0.500;AN=2;DB;DP=536;set=Intersection	GT:AD:AF:DP	0/1:267,262:0.50:529
chr5	167957554	rs3733977	G	A	673.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:39,29:0.43:68
chr5	167984721	rs13185224	T	C	2087.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:88,103:0.54:191
chr5	167986274	rs158894	G	C	411.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr5	168093522	rs1048307	G	A	1265.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:48,56:0.54:104
chr5	168097122	rs2303002	T	G	456.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:14,19:0.58:33
chr5	168098463	rs292486	A	G	11953.77	.	AC=2;AF=1.00;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	1/1:0,443:1.00:443
chr5	168111122	rs112053852	G	A	3281.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:167,163:0.49:330
chr5	168111265	rs77134085	T	C	736.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:28,29:0.51:57
chr5	168123129	rs77078040	C	T	534.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:19,22:0.54:41
chr5	168187760	rs2288797	G	C	772.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:27,36:0.57:63
chr5	168188048	rs7725649	A	T	1193.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr5	168189501	rs2288796	C	T	4532.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.61;SOR=1.134;set=HC	GT:AD:AF:DP	1/1:0,177:1.00:177
chr5	168195356	rs11134527	G	A	8181.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr5	168212951	rs891921	A	G	9071.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:0,338:1.00:338
chr5	168233413	rs3797716	G	A	17966.77	.	AC=2;AF=1.00;AN=2;DB;DP=686;set=Intersection	GT:AD:AF:DP	1/1:0,672:1.00:672
chr5	168620435	rs11744813	C	A	1040.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:69,51:0.42:120
chr5	168620720	rs79192318	C	T	218.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:25,12:0.32:37
chr5	168690612	rs62376934	A	G	2606.77	.	AC=1;AF=0.500;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	0/1:214,144:0.40:358
chr5	169021610	rs4493692	C	T	2195.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:141,109:0.44:250
chr5	169028481	rs3797713	T	C	8405.77	.	AC=1;AF=0.500;AN=2;DB;DP=751;set=Intersection	GT:AD:AF:DP	0/1:343,390:0.53:733
chr5	169031150	rs3777084	T	C	1389.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:56,66:0.54:122
chr5	169031218	rs2042248	G	T	873.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:39,38:0.49:77
chr5	169096207	rs139378784	T	TAAAAC	1907.73	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:41,45:0.52:86
chr5	169097474	rs2306564	G	C	1347.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:42,58:0.58:100
chr5	169097505	rs111473735	T	TTTTTA	3804.73	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:94,93:0.50:187
chr5	169097940	rs2306565	G	A	1339.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:75,63:0.46:138
chr5	169101599	rs2244445	C	T	2271.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:120,102:0.46:222
chr5	169126349	rs2306562	A	G	1554.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:47,74:0.61:121
chr5	169127097	rs2112703	C	A	3198.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:138,151:0.52:289
chr5	169127270	rs2161405	G	A	578.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.324;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=1.368;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.31;ReadPosRankSum=-0.696;SOR=0.448;set=HC	GT:AD:AF:DP	0/1:22,25:0.53:47
chr5	169127276	rs264845	A	C	1738.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.64;SOR=2.461;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr5	169129284	rs2306560	G	A	1797.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:97,90:0.48:187
chr5	169129495	rs3816764	G	A	676.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:29,30:0.51:59
chr5	169310213	rs17646221	A	C	2347.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:84,101:0.55:185
chr5	169361595	rs259897	A	G	1425.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:69,72:0.51:141
chr5	169422920	rs2059110	A	G	265.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:17,11:0.39:28
chr5	169435880	rs10056324	C	T	482.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:20,21:0.51:41
chr5	169454831	rs13175232	G	A	8524.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.863;ClippingRankSum=0.000;DB;DP=459;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.86;ReadPosRankSum=1.475;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:229,223:0.49:452
chr5	169454831	.	GAT	AAC	2944	.	AC=1;AF=0.500;AN=2;BRF=0.43;FR=0.5000;HP=1;HapScore=1;MGOF=4;MMLQ=22;MQ=60.0;NF=77;NR=63;PP=2944;QD=20;SC=TCAGCCTTCTGATGTTATTGT;SbPval=0.53;Source=Platypus;TC=309;TCF=170;TCR=139;TR=140;WE=169454841;WS=169454821;set=Platypus	GT:AD:AF:DP	1/0:169,140:0.45:309
chr5	169454833	rs13157227	T	C	8524.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.103;ClippingRankSum=0.000;DB;DP=467;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.53;ReadPosRankSum=0.702;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:234,226:0.49:460
chr5	169454941	rs9791113	C	G	3548.77	.	AC=1;AF=0.500;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	0/1:195,170:0.47:365
chr5	169455367	rs111573162	A	G	821.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:57,43:0.43:100
chr5	169461399	rs3763047	G	A	8695.77	.	AC=1;AF=0.500;AN=2;DB;DP=759;set=Intersection	GT:AD:AF:DP	0/1:333,420:0.56:753
chr5	169461547	rs3763048	C	T	9060.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	1/1:2,334:0.99:336
chr5	169463347	rs6899021	A	G	1155.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:81,54:0.40:135
chr5	169463421	rs6899181	C	G	3123.77	.	AC=1;AF=0.500;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	0/1:235,153:0.39:388
chr5	169463466	rs6863396	G	T	3849.77	.	AC=1;AF=0.500;AN=2;DB;DP=496;set=Intersection	GT:AD:AF:DP	0/1:299,194:0.39:493
chr5	169463740	rs111664717	G	A	574.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:25,25:0.50:50
chr5	169468243	rs2270895	A	G	2885.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr5	169468929	rs2270897	A	G	1538.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr5	169472765	rs6884561	C	G	6114.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr5	169472788	rs10074769	A	C	3384.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:139,159:0.53:298
chr5	169474325	rs905155	A	C	2092.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr5	169496051	rs6868503	T	C	9922.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:0,341:1.00:341
chr5	169504743	rs1045168	T	C	10409.77	.	AC=1;AF=0.500;AN=2;DB;DP=960;set=Intersection	GT:AD:AF:DP	0/1:465,481:0.51:946
chr5	169504944	rs79354516	T	C	1362.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:68,54:0.44:122
chr5	169507067	rs9885452	A	G	3404.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:152,166:0.52:318
chr5	169509664	rs56105279	G	A	1426.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:68,62:0.48:130
chr5	169535522	rs10063424	T	C	9260.77	.	AC=1;AF=0.500;AN=2;DB;DP=878;set=Intersection	GT:AD:AF:DP	0/1:420,451:0.52:871
chr5	169675693	rs80044664	AT	A	12465.73	.	AC=2;AF=1.00;AN=2;DB;DP=350;MQ=60.15;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chr5	169679354	rs1546451	C	T	5063.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr5	169679947	rs6880961	C	T	2114.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr5	169686008	.	C	A	416.77	.	AC=1;AF=0.500;AN=2;DP=31;set=Intersection	GT:AD:AF:DP	0/1:13,17:0.57:30
chr5	169689604	rs395407	G	C	1736.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr5	169702390	rs2271146	C	A	3622.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:1,139:0.99:140
chr5	169715038	rs315721	A	G	4333.77	.	AC=1;AF=0.500;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	0/1:209,205:0.50:414
chr5	169805629	rs2656841	TG	GT	2126.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;JOINED;set=Intersection	GT:AD:AF:DP	0/1:51,55:0.52:106
chr5	169806001	rs314157	T	C	2518.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:97,121:0.56:218
chr5	169810966	rs703507	A	C	1108.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:63,48:0.43:111
chr5	169812303	rs2071156	G	A	1553.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:78,74:0.49:152
chr5	169910084	rs4867968	G	T	1452.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:89,72:0.45:161
chr5	170145584	rs6555913	G	A	574.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:22,23:0.51:45
chr5	170149573	rs2277952	C	T	963.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:46,41:0.47:87
chr5	170149674	rs12514966	A	T	3662.77	.	AC=1;AF=0.500;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	0/1:189,176:0.48:365
chr5	170159997	rs17650650	C	T	391.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:20,17:0.46:37
chr5	170160749	rs4868018	G	A	1931.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:109,93:0.46:202
chr5	170162666	rs1363712	T	C	3071.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:121,136:0.53:257
chr5	170215490	rs4868028	T	C	2018.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:84,84:0.50:168
chr5	170235849	rs72837689	G	C	1352.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:57,56:0.50:113
chr5	170288922	rs11749349	A	G	159.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:12,8:0.40:20
chr5	170289221	rs10475962	T	G	224.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:11,11:0.50:22
chr5	170323258	rs2287893	A	G	1241.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:61,56:0.48:117
chr5	170336614	rs1833596	G	C	348.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.302;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=3.662;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=1.200;QD=5.91;ReadPosRankSum=-1.893;SOR=1.070;set=HC	GT:AD:AF:DP	0/1:34,25:0.42:59
chr5	170341326	rs34458065	TTA	T	732.73	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:10,21:0.68:31
chr5	170343326	.	G	A	28	.	AC=1;AF=0.500;AN=2;BRF=0.5;FR=0.5000;HP=2;HapScore=2;MGOF=13;MMLQ=28;MQ=44.36;NF=3;NR=0;PP=28;QD=20.9237375157;SC=ATTATAATGCGTTATATTCTA;SbPval=1.0;Source=Platypus;TC=6;TCF=6;TCR=0;TR=3;WE=170343334;WS=170343316;set=Platypus	GT:AD:AF:DP	1/0:3,3:0.50:6
chr5	170343353	.	G	A	73	.	AC=1;AF=0.500;AN=2;BRF=0.4;FR=0.5000;HP=2;HapScore=2;MGOF=10;MMLQ=26;MQ=51.99;NF=5;NR=1;PP=73;QD=17.9618687579;SC=ATTATAATGCGTTATATTCTA;SbPval=0.73;Source=Platypus;TC=10;TCF=8;TCR=2;TR=6;WE=170343361;WS=170343343;set=Platypus	GT:AD:AF:DP	1/0:4,6:0.60:10
chr5	170346711	rs192372161	G	A	1169.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:42,47:0.53:89
chr5	170380523	rs930891	G	A	1313.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:52,58:0.53:110
chr5	170395512	rs2879366	A	T	605.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:25,25:0.50:50
chr5	170395820	rs11134672	G	A	701.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:31,30:0.49:61
chr5	170395885	rs2446049	T	C	672.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr5	170610273	rs6555936	G	A	3243.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:132,142:0.52:274
chr5	170640827	rs4867648	C	A	2097.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:83,92:0.53:175
chr5	170720755	rs2914330	T	A	909.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr5	170813951	rs28411383	C	CT	701.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr5	170815125	rs2071276	G	T	1452.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr5	170818897	rs3830032	A	G	1919.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.63;SOR=0.883;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr5	170818906	rs3830033	T	A	2001.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.52;SOR=0.780;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr5	170818964	rs138910433	G	GGT	1025.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.45;QD=42.74;SOR=1.051;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr5	170818969	rs3830034	A	G	1090.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.43;QD=43.63;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr5	170819887	rs3830035	G	A	6883.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr5	170827115	rs6555952	C	A	13932.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.145;ClippingRankSum=0.000;DB;DP=335;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=42.48;ReadPosRankSum=1.273;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:4,324:0.99:328
chr5	170827118	rs6555953	A	G	13828.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.989;ClippingRankSum=0.000;DB;DP=326;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=43.35;ReadPosRankSum=1.415;SOR=0.738;set=HC	GT:AD:AF:DP	1/1:4,315:0.99:319
chr5	170847555	rs6555955	T	C	2359.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr5	170876364	.	C	CGTGTGTGTGTGTGT	142.37	.	AC=2;AF=1.00;AN=2;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.53;QD=28.47;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr5	171200659	rs27947	T	G	1198.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:36,46:0.56:82
chr5	171200997	rs26400	C	A	1011.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:50,50:0.50:100
chr5	171201499	rs12153230	G	C	5352.77	.	AC=1;AF=0.500;AN=2;DB;DP=547;set=Intersection	GT:AD:AF:DP	0/1:290,254:0.47:544
chr5	171217371	rs11950253	G	A	4683.77	.	AC=1;AF=0.500;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	0/1:194,214:0.52:408
chr5	171326223	rs2288816	A	G	317.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:22,16:0.42:38
chr5	171472417	rs4867662	A	G	2086.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr5	171472575	rs4868136	G	A	10631.77	.	AC=2;AF=1.00;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	1/1:0,405:1.00:405
chr5	171480055	rs4569891	G	A	5775.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:2,217:0.99:219
chr5	171481606	rs10155597	A	G	2374.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:144,120:0.45:264
chr5	171484631	rs13157965	T	C	698.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr5	171533629	rs2306963	A	G	2547.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr5	171533656	rs2306962	C	T	3562.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr5	171554473	rs2279514	G	A	8346.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr5	171627773	rs2306959	G	C	3657.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr5	171630197	rs201583078	T	TTTTC	3076.73	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr5	171630204	rs372914830	CACCCT	C	3466.73	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr5	171760544	rs35951290	TA	T	1158.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.019;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=2.940;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.00;ReadPosRankSum=0.078;SOR=0.183;set=HC	GT:AD:AF:DP	0/1:25,36:0.59:61
chr5	171760546	rs3204110	A	T	1020.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=5.643;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.73;ReadPosRankSum=0.117;SOR=0.542;set=HC	GT:AD:AF:DP	0/1:33,28:0.46:61
chr5	171760569	rs12033	A	G	1843.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:59,65:0.52:124
chr5	171774363	rs17074690	T	C	2460.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:121,121:0.50:242
chr5	171777393	rs75198607	G	A	1345.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:96,66:0.41:162
chr5	171777495	rs77955907	G	T	2202.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:125,114:0.48:239
chr5	171785702	rs17703000	A	G	751.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:12,27:0.69:39
chr5	171785892	rs2569232	A	G	2395.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:105,114:0.52:219
chr5	171786049	rs75578956	A	G	663.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:16,28:0.64:44
chr5	171789689	rs76897113	A	G	2094.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:84,101:0.55:185
chr5	171789779	rs76299613	G	A	4379.77	.	AC=1;AF=0.500;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	0/1:204,209:0.51:413
chr5	171849289	rs6873315	A	G	1027.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:52,51:0.50:103
chr5	171881412	rs62385470	G	C	4779.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:111,132:0.54:243
chr5	171881423	rs139600850	G	A	4599.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:100,114:0.53:214
chr5	172096768	rs10476046	C	A	841.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:31,34:0.52:65
chr5	172097353	rs6556037	C	T	1664.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:98,80:0.45:178
chr5	172110833	rs142447086	C	T	1028.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:38,46:0.55:84
chr5	172196711	rs2431663	G	T	11245.77	.	AC=2;AF=1.00;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	1/1:0,421:1.00:421
chr5	172261462	rs35566639	G	A	6130.77	.	AC=1;AF=0.500;AN=2;DB;DP=537;MQ=60.02;set=Intersection	GT:AD:AF:DP	0/1:246,290:0.54:536
chr5	172261489	rs35768025	C	A	5261.77	.	AC=1;AF=0.500;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	0/1:181,242:0.57:423
chr5	172261538	rs78078909	C	A	3034.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:83,137:0.62:220
chr5	172261583	rs111773832	GC	G,GCC	1617.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.321;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.12;MQRankSum=0.000;QD=19.97;ReadPosRankSum=-0.137;SOR=1.222;set=HC	GT:AD:AF:DP	1/2:6,51,24:0.63,0.30:81
chr5	172261593	rs63376061	T	C	1068.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.073;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=5.098;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.43;ReadPosRankSum=-0.572;SOR=1.539;set=HC	GT:AD:AF:DP	0/1:52,34:0.40:86
chr5	172294194	rs793027	G	T	4428.77	.	AC=1;AF=0.500;AN=2;DB;DP=478;set=Intersection	GT:AD:AF:DP	0/1:258,213:0.45:471
chr5	172294513	rs17075346	G	A	7079.77	.	AC=1;AF=0.500;AN=2;DB;DP=697;set=Intersection	GT:AD:AF:DP	0/1:352,338:0.49:690
chr5	172315872	rs4868227	G	A	1523.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.252;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=5.966;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.00;ReadPosRankSum=-0.428;SOR=1.369;set=HC	GT:AD:AF:DP	0/1:68,59:0.46:127
chr5	172324128	rs13154777	A	T	1424.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:79,66:0.46:145
chr5	172336616	rs2302957	C	T	13995.77	.	AC=2;AF=1.00;AN=2;DB;DP=536;set=Intersection	GT:AD:AF:DP	1/1:2,527:1.00:529
chr5	172341917	rs17716949	T	C	6512.77	.	AC=1;AF=0.500;AN=2;DB;DP=720;set=Intersection	GT:AD:AF:DP	0/1:388,323:0.45:711
chr5	172342029	rs35941893	G	GT	3194.73	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:165,147:0.47:312
chr5	172347440	rs13187960	G	A	9267.77	.	AC=1;AF=0.500;AN=2;DB;DP=874;set=Intersection	GT:AD:AF:DP	0/1:416,447:0.52:863
chr5	172351160	rs2302958	G	A	2536.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:109,109:0.50:218
chr5	172385267	rs34217217	C	CA	818.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.363;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=5.688;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=1.580;QD=6.88;ReadPosRankSum=0.950;SOR=1.347;set=HC	GT:AD:AF:DP	0/1:50,69:0.58:119
chr5	172395664	rs11749686	T	C	9499.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:0,354:1.00:354
chr5	172396394	rs505788	C	T	14265.77	.	AC=2;AF=1.00;AN=2;DB;DP=546;set=Intersection	GT:AD:AF:DP	1/1:0,531:1.00:531
chr5	172421760	.	A	AT	138.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.503;ClippingRankSum=0.000;DP=106;ExcessHet=3.0103;FS=3.898;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=0.000;QD=1.51;ReadPosRankSum=1.765;SOR=0.319;set=HC	GT:AD:AF:DP	0/1:70,22:0.24:92
chr5	172494981	rs582067	C	T	607.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	172512686	rs671387	C	T	1100.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr5	172561290	.	TATAC	T	52.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.955;ClippingRankSum=0.000;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.43;ReadPosRankSum=-0.571;SOR=0.910;set=HC	GT:AD:AF:DP	0/1:28,9:0.24:37
chr5	172561292	.	TAC	T	247.73	.	AC=1;AF=0.500;ALERT;AN=2;DP=51;set=Intersection	GT:AD:AF:DP	0/1:19,15:0.44:34
chr5	172561294	rs2544581	C	T	59.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.800;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.66;ReadPosRankSum=0.952;SOR=0.460;set=HC	GT:AD:AF:DP	0/1:28,8:0.22:36
chr5	172573767	rs29798	T	C	3591.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr5	172585927	rs5745160	TC	T	14264.73	.	AC=2;AF=1.00;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	1/1:3,397:0.99:400
chr5	172588027	rs255303	G	T	667.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	172659511	rs703752	C	A	1665.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:78,77:0.50:155
chr5	172660508	.	CA	C	50.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.526;ClippingRankSum=0.000;DP=138;ExcessHet=3.0103;FS=2.461;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.53;ReadPosRankSum=0.814;SOR=1.165;set=HC	GT:AD:AF:DP	0/1:73,23:0.24:96
chr5	172660522	rs371347562	AT	A	275.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.358;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=13.316;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.81;ReadPosRankSum=1.230;SOR=1.021;set=HC	GT:AD:AF:DP	0/1:80,18:0.18:98
chr5	172660527	rs55880439	T	A	54.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.753;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=10.256;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.65;ReadPosRankSum=1.088;SOR=1.044;set=HC	GT:AD:AF:DP	0/1:73,11:0.13:84
chr5	172745269	rs4041247	A	AAG	711.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.143;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=0.993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.24;ReadPosRankSum=1.279;SOR=0.484;set=HC	GT:AD:AF:DP	0/1:43,34:0.44:77
chr5	173316729	rs359467	G	A	7893.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr5	173380346	rs969518	C	T	1981.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr5	173383194	rs1564823	C	A	536.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:25,21:0.46:46
chr5	173416234	rs11745410	C	G	875.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:48,42:0.47:90
chr5	173527846	rs6881757	T	C	2965.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:134,137:0.51:271
chr5	173534877	rs4457100	A	G	877.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:21,34:0.62:55
chr5	173632336	rs7731312	A	G	3192.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr5	174152100	rs2048152	G	A	5279.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr5	174156168	rs4242182	T	C	19129.77	.	AC=2;AF=1.00;AN=2;DB;DP=730;set=Intersection	GT:AD:AF:DP	1/1:0,721:1.00:721
chr5	174178774	rs7709117	G	A	7675.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr5	174868840	rs155417	T	C	9544.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	1/1:0,354:1.00:354
chr5	174935916	rs2662168	A	G	1431.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:69,68:0.50:137
chr5	174937193	rs2662170	C	T	4098.77	.	AC=1;AF=0.500;AN=2;DB;DP=536;set=Intersection	GT:AD:AF:DP	0/1:322,212:0.40:534
chr5	174939214	rs925197	C	T	3967.77	.	AC=1;AF=0.500;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	0/1:233,196:0.46:429
chr5	174949652	rs35822721	C	CT	499.73	.	AC=1;AF=0.500;AN=2;DB;DP=57;MQ=60.19;set=Intersection	GT:AD:AF:DP	0/1:30,24:0.44:54
chr5	174953743	rs198039	G	A	2309.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:118,105:0.47:223
chr5	175307256	rs3822674	T	C	10715.77	.	AC=2;AF=1.00;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	1/1:0,389:1.00:389
chr5	175307373	rs11747985	G	A	1101.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:34,42:0.55:76
chr5	175511992	rs62389230	C	T	5793.77	.	AC=1;AF=0.500;AN=2;DB;DP=569;set=Intersection	GT:AD:AF:DP	0/1:286,280:0.49:566
chr5	175528527	rs116633144	A	T	383.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:165,30:0.15:195
chr5	175530166	rs146119027	G	C	1015.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.687;ClippingRankSum=0.000;DB;DP=339;ExcessHet=3.0103;FS=0.547;MLEAC=1;MLEAF=0.500;MQ=46.68;MQRankSum=-7.192;QD=3.13;ReadPosRankSum=-0.900;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:252,73:0.22:325
chr5	175665427	rs70991519	G	GC	322.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.13;QD=29.34;SOR=3.442;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr5	175721967	.	CAA	C	199.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.661;ClippingRankSum=0.000;DP=68;ExcessHet=3.0103;FS=5.145;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.34;ReadPosRankSum=-0.188;SOR=2.007;set=HC	GT:AD:AF:DP	0/1:30,16:0.35:46
chr5	175792605	rs2303667	G	C	7290.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:1,285:1.00:286
chr5	175793717	rs3815898	C	T	5421.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:1,191:0.99:192
chr5	175798945	rs10214381	A	C	6650.77	.	AC=1;AF=0.500;AN=2;DB;DP=673;set=Intersection	GT:AD:AF:DP	0/1:350,316:0.47:666
chr5	175811094	rs56989856	C	CGT	24506.73	.	AC=2;AF=1.00;AN=2;DB;DP=685;set=Intersection	GT:AD:AF:DP	1/1:0,616:1.00:616
chr5	175823607	rs376796902	TAG	T	116.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.466;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=1.887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.36;ReadPosRankSum=-0.511;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:75,11:0.13:86
chr5	175824778	rs56370633	G	A	5195.77	.	AC=1;AF=0.500;AN=2;DB;DP=470;set=Intersection	GT:AD:AF:DP	0/1:220,240:0.52:460
chr5	175843135	rs111288271	G	A	1583.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:101,80:0.44:181
chr5	175843461	rs33956988	CG	C	2819.73	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr5	175915835	rs2963667	C	T	1542.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr5	175915861	rs17052333	G	A	848.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:34,38:0.53:72
chr5	175921150	rs3217316	AGTT	A	5105.73	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:133,132:0.50:265
chr5	175923431	rs2963670	G	A	504.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:18,20:0.53:38
chr5	175927262	rs377249587	CAG	C	409.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.362;ClippingRankSum=0.000;DB;DP=267;ExcessHet=3.0103;FS=4.303;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.02;ReadPosRankSum=-1.223;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:169,34:0.17:203
chr5	175933691	rs113700453	TGTGTGTGC	T	674.73	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:57,25:0.30:82
chr5	175956271	rs890835	A	C	5469.77	.	AC=1;AF=0.500;AN=2;DB;DP=580;set=Intersection	GT:AD:AF:DP	0/1:300,274:0.48:574
chr5	175956516	rs2241585	G	A	4120.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:145,186:0.56:331
chr5	175992258	rs6556275	A	G	1900.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:109,95:0.47:204
chr5	175992519	rs4523018	T	A	1392.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:53,54:0.50:107
chr5	175994125	rs12656372	A	G	5832.77	.	AC=1;AF=0.500;AN=2;DB;DP=556;set=Intersection	GT:AD:AF:DP	0/1:266,281:0.51:547
chr5	175994173	rs11392917	C	CT	1752.84	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.298;ClippingRankSum=0.000;DB;DP=230;ExcessHet=3.0103;FS=4.602;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=0.594;QD=10.96;ReadPosRankSum=-0.291;SOR=0.319;set=HC	GT:AD:AF:DP	0/1:40,120:0.75:160
chr5	175995857	rs76514370	G	C	4767.77	.	AC=1;AF=0.500;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	0/1:248,215:0.46:463
chr5	175995935	rs10056130	C	T	6969.77	.	AC=1;AF=0.500;AN=2;DB;DP=647;set=Intersection	GT:AD:AF:DP	0/1:314,324:0.51:638
chr5	176001975	rs1078450	T	C	501.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:26,20:0.43:46
chr5	176002144	rs4242200	A	C	5075.77	.	AC=1;AF=0.500;AN=2;DB;DP=534;set=Intersection	GT:AD:AF:DP	0/1:286,245:0.46:531
chr5	176002542	rs41275281	C	T	4425.77	.	AC=1;AF=0.500;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	0/1:231,209:0.47:440
chr5	176002707	rs3762970	C	T	3846.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:168,180:0.52:348
chr5	176002873	rs3762969	C	T	4585.77	.	AC=1;AF=0.500;AN=2;DB;DP=444;set=Intersection	GT:AD:AF:DP	0/1:229,210:0.48:439
chr5	176002926	rs3762968	C	A	5753.77	.	AC=1;AF=0.500;AN=2;DB;DP=548;set=Intersection	GT:AD:AF:DP	0/1:280,263:0.48:543
chr5	176004312	rs11749537	A	G	2661.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr5	176004476	rs11134982	T	C	9720.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:0,350:1.00:350
chr5	176004846	rs1565149	C	T	2864.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:124,123:0.50:247
chr5	176004866	rs35146200	A	AGT	2058.73	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:81,69:0.46:150
chr5	176004903	rs11747451	T	C	1411.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:67,66:0.50:133
chr5	176005175	rs1565150	A	C	1892.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.259;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=2.771;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.68;ReadPosRankSum=-0.629;SOR=0.499;set=HC	GT:AD:AF:DP	0/1:77,85:0.52:162
chr5	176005184	rs1565151	G	A	5877.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr5	176005477	rs2358747	C	T	13135.77	.	AC=2;AF=1.00;AN=2;DB;DP=504;set=Intersection	GT:AD:AF:DP	1/1:0,496:1.00:496
chr5	176008238	rs4867840	G	T	1310.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:43,54:0.56:97
chr5	176011264	rs752139	T	C	2496.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:136,120:0.47:256
chr5	176011889	rs4868660	G	A	3993.77	.	AC=1;AF=0.500;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	0/1:171,185:0.52:356
chr5	176017549	rs4868662	C	T	2349.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:81,107:0.57:188
chr5	176018545	rs11134984	G	A	2739.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:100,124:0.55:224
chr5	176024880	rs4868663	C	T	5381.77	.	AC=1;AF=0.500;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	0/1:204,227:0.53:431
chr5	176025938	rs6556276	T	C	11818.77	.	AC=2;AF=1.00;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	1/1:0,441:1.00:441
chr5	176026491	rs35847475	G	A	2929.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:133,135:0.50:268
chr5	176053336	rs72322414	GGTGT	G,GGT	2761.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.12;QD=33.68;SOR=1.240;set=HC	GT:AD:AF:DP	1/2:0,49,33:0.60,0.40:82
chr5	176053645	rs2291441	C	G	3537.77	.	AC=1;AF=0.500;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	0/1:191,179:0.48:370
chr5	176056529	rs4868669	A	G	21222.77	.	AC=2;AF=1.00;AN=2;DB;DP=840;set=Intersection	GT:AD:AF:DP	1/1:2,826:1.00:828
chr5	176069831	rs901740	G	A	7458.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.62;SOR=1.798;set=HC	GT:AD:AF:DP	1/1:0,303:1.00:303
chr5	176069862	.	C	CT,CCT	358.73	.	AC=1,0;AF=0.500,0.00;ALERT;AN=2;DP=192;set=Intersection	GT:AF:DP	0/1:0.20:177
chr5	176069863	.	C	CT	3122.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.771;ClippingRankSum=0.000;DP=195;ExcessHet=3.0103;FS=0.945;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.54;ReadPosRankSum=-0.767;SOR=0.983;set=HC	GT:AD:AF:DP	0/1:38,140:0.79:178
chr5	176069866	rs56115420	C	CGCCCG,CCGCCCG	7357.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=189;set=Intersection	GT:AF:DP	1/2:0.20,0.79:172
chr5	176081591	rs13182989	C	T	10291.77	.	AC=1;AF=0.500;AN=2;DB;DP=1057;set=Intersection	GT:AD:AF:DP	0/1:550,492:0.47:1042
chr5	176081856	rs13183320	A	G	12943.77	.	AC=2;AF=1.00;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	1/1:0,456:1.00:456
chr5	176081907	rs11267007	C	T	5437.77	.	AC=1;AF=0.500;AN=2;DB;DP=588;set=Intersection	GT:AD:AF:DP	0/1:312,271:0.46:583
chr5	176083175	rs6878977	T	G	6131.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr5	176083997	rs4868677	G	A	6538.77	.	AC=1;AF=0.500;AN=2;DB;DP=620;set=Intersection	GT:AD:AF:DP	0/1:310,305:0.50:615
chr5	176304399	rs2304517	A	G	6858.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr5	176305466	rs2304516	T	A	29839.77	.	AC=2;AF=1.00;AN=2;DB;DP=1140;set=Intersection	GT:AD:AF:DP	1/1:2,1123:1.00:1125
chr5	176305678	rs478253	C	T	4567.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr5	176306676	rs2292257	G	A	4354.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr5	176314434	rs2278493	C	T	7882.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr5	176314459	rs2278492	G	A	8258.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr5	176314639	rs6875296	G	A	14990.77	.	AC=2;AF=1.00;AN=2;DB;DP=576;set=Intersection	GT:AD:AF:DP	1/1:2,562:1.00:564
chr5	176315299	rs4976662	C	T	9672.77	.	AC=2;AF=1.00;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	1/1:0,363:1.00:363
chr5	176333174	.	C	T	1429.77	.	AC=1;AF=0.500;AN=2;DP=118;set=Intersection	GT:AD:AF:DP	0/1:54,64:0.54:118
chr5	176338113	.	GAAGAAAAGAA	G,GAAGAA	2284.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.68;QD=38.72;SOR=2.507;set=HC	GT:AD:AF:DP	1/2:0,27,32:0.46,0.54:59
chr5	176516631	rs1966265	G	A	2503.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:113,121:0.52:234
chr5	176516953	rs434434	A	G	4410.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr5	176517136	rs59390048	C	CGTGT,CGTGTGT	2433.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=74;set=Intersection	GT:AF:DP	1/2:0.54,0.40:63
chr5	176517170	rs387598	G	A	3887.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr5	176517292	rs442856	A	G	9925.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	1/1:0,380:1.00:380
chr5	176517326	rs422421	T	C	10193.77	.	AC=2;AF=1.00;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	1/1:0,373:1.00:373
chr5	176517461	rs446382	T	G	6644.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr5	176517797	rs376618	C	T	38106.77	.	AC=2;AF=1.00;AN=2;DB;DP=1384;set=Intersection	GT:AD:AF:DP	1/1:0,1377:1.00:1377
chr5	176518784	rs452885	C	T	8015.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr5	176519287	rs393923	G	A	2740.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr5	176520243	rs351855	G	A	3331.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:127,140:0.52:267
chr5	176520283	.	G	C	70.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.799;ClippingRankSum=0.000;DP=231;ExcessHet=3.0103;FS=232.279;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.32;ReadPosRankSum=-4.163;SOR=6.516;set=HC	GT:AD:AF:DP	0/1:199,25:0.11:224
chr5	176522728	rs42409	C	T	1496.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr5	176523562	rs31777	C	A	15268.77	.	AC=2;AF=1.00;AN=2;DB;DP=573;set=Intersection	GT:AD:AF:DP	1/1:1,569:1.00:570
chr5	176523597	rs31776	A	G	16379.77	.	AC=2;AF=1.00;AN=2;DB;DP=619;set=Intersection	GT:AD:AF:DP	1/1:4,606:0.99:610
chr5	176563974	.	G	C	1908.77	.	AC=1;AF=0.500;AN=2;DP=170;set=Intersection	GT:AD:AF:DP	0/1:76,90:0.54:166
chr5	176630984	rs7721671	T	C	871.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr5	176636882	rs1363405	C	T	6816.77	.	AC=1;AF=0.500;AN=2;DB;DP=679;set=Intersection	GT:AD:AF:DP	0/1:347,325:0.48:672
chr5	176637149	rs3733874	G	A	5473.77	.	AC=1;AF=0.500;AN=2;DB;DP=525;set=Intersection	GT:AD:AF:DP	0/1:259,259:0.50:518
chr5	176637240	rs3733875	G	T	4150.77	.	AC=1;AF=0.500;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	0/1:219,192:0.47:411
chr5	176637576	rs28932178	T	C	5802.77	.	AC=1;AF=0.500;AN=2;DB;DP=665;set=Intersection	GT:AD:AF:DP	0/1:371,283:0.43:654
chr5	176639217	rs35159794	T	TA	1062.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.258;ClippingRankSum=0.000;DB;DP=234;ExcessHet=3.0103;FS=2.102;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.205;QD=5.24;ReadPosRankSum=1.212;SOR=0.915;set=HC	GT:AD:AF:DP	0/1:109,94:0.46:203
chr5	176639304	rs6556305	C	G	2070.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr5	176684229	.	CTTT	C	369.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.045;ClippingRankSum=0.000;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.44;ReadPosRankSum=0.934;SOR=0.819;set=HC	GT:AD:AF:DP	0/1:45,23:0.34:68
chr5	176700885	rs12660023	G	A	700.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:46,30:0.39:76
chr5	176721198	rs28580074	T	C	5597.77	.	AC=1;AF=0.500;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	0/1:212,246:0.54:458
chr5	176729736	rs58443060	AC	A	3974.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.284;ClippingRankSum=0.000;DB;DP=457;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.942;QD=12.38;ReadPosRankSum=0.252;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:94,227:0.71:321
chr5	176733116	rs4631	A	G	3304.77	.	AC=1;AF=0.500;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	0/1:197,164:0.45:361
chr5	176733616	rs9834	T	C	5521.77	.	AC=1;AF=0.500;AN=2;DB;DP=525;set=Intersection	GT:AD:AF:DP	0/1:259,264:0.50:523
chr5	176737720	rs13190036	A	G	8167.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr5	176764439	.	C	T	6465.77	.	AC=1;AF=0.500;AN=2;DP=667;set=Intersection	GT:AD:AF:DP	0/1:352,310:0.47:662
chr5	176798070	.	CGGGCCGGGGCCG	C	453.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.777;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.91;MQRankSum=2.774;QD=17.45;ReadPosRankSum=0.653;SOR=0.321;set=HC	GT:AD:AF:DP	0/1:13,13:0.50:26
chr5	176830627	rs17876032	G	A	1109.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:52,51:0.50:103
chr5	176831119	rs17876031	A	G	6038.77	.	AC=1;AF=0.500;AN=2;DB;DP=512;set=Intersection	GT:AD:AF:DP	0/1:239,271:0.53:510
chr5	176831177	rs35966430	TC	T	4863.73	.	AC=1;AF=0.500;AN=2;DB;DP=491;set=Intersection	GT:AD:AF:DP	0/1:229,247:0.52:476
chr5	176831826	rs17876030	C	G	5333.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr5	176831980	rs17876029	T	C	16968.77	.	AC=2;AF=1.00;AN=2;DB;DP=620;set=Intersection	GT:AD:AF:DP	1/1:0,617:1.00:617
chr5	176836532	rs1801020	A	G	5396.77	.	AC=1;AF=0.500;AN=2;DB;DP=548;set=Intersection	GT:AD:AF:DP	0/1:281,264:0.48:545
chr5	176858049	rs867755	C	T	1063.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:40,48:0.55:88
chr5	176860872	rs183940903	C	T	1782.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:65,70:0.52:135
chr5	176862963	rs4976695	T	A	803.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:50,41:0.45:91
chr5	176863519	rs1130857	G	C	2563.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:90,117:0.57:207
chr5	176867943	rs335435	A	G	3408.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:156,155:0.50:311
chr5	176885178	rs28538572	A	G	7931.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr5	176885499	rs2544809	T	C	4680.77	.	AC=1;AF=0.500;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	0/1:188,209:0.53:397
chr5	176886539	rs385981	C	T	338.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:7,14:0.67:21
chr5	176894756	rs2545794	C	T	6958.77	.	AC=1;AF=0.500;AN=2;DB;DP=685;set=Intersection	GT:AD:AF:DP	0/1:339,337:0.50:676
chr5	176895817	rs446104	GC	AA	15786.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,350:1.00:350
chr5	176916516	rs335462	C	T	2851.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:128,136:0.52:264
chr5	176917078	rs734825	T	C	4631.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr5	176929974	rs2544814	G	A	453.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:11,18:0.62:29
chr5	176930135	rs28376231	G	A	8437.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr5	176930171	rs138153794	AGAG	A	8498.73	.	AC=1;AF=0.500;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	0/1:247,222:0.47:469
chr5	176931706	rs179810	G	C	2820.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:100,125:0.56:225
chr5	176935215	rs55761704	GC	G	2222.73	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:1,72:0.99:73
chr5	176936650	rs28565502	T	C	7968.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr5	176938681	rs28695578	C	T	3640.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr5	176939688	rs28544348	C	T	17417.77	.	AC=2;AF=1.00;AN=2;DB;DP=641;set=Intersection	GT:AD:AF:DP	1/1:0,633:1.00:633
chr5	176939735	rs335436	A	G	20607.77	.	AC=2;AF=1.00;AN=2;DB;DP=771;set=Intersection	GT:AD:AF:DP	1/1:0,757:1.00:757
chr5	176940274	rs335437	C	T	2671.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:93,103:0.53:196
chr5	176940384	rs335438	G	A	8684.77	.	AC=1;AF=0.500;AN=2;DB;DP=810;set=Intersection	GT:AD:AF:DP	0/1:379,411:0.52:790
chr5	176940871	rs335439	G	C	8926.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr5	176942371	rs372373486	CAG	C	864.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.148;ClippingRankSum=0.000;DB;DP=258;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.55;ReadPosRankSum=1.510;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:146,44:0.23:190
chr5	176950794	rs28723606	A	G	2728.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr5	176950879	rs28688891	T	C	10448.77	.	AC=2;AF=1.00;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	1/1:0,371:1.00:371
chr5	176951276	rs337382	A	G	15274.77	.	AC=2;AF=1.00;AN=2;DB;DP=562;set=Intersection	GT:AD:AF:DP	1/1:0,555:1.00:555
chr5	176959296	rs2246566	T	G	3110.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:104,114:0.52:218
chr5	176963349	rs335460	G	A	5547.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr5	176965161	rs188547767	G	A	704.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:48,31:0.39:79
chr5	176981490	.	A	ACGCCGCGC	712.27	.	AC=1;AF=0.500;AN=2;DP=56;set=Intersection	GT:AD:AF:DP	0/1:2,18:0.90:20
chr5	177019688	rs4607363	G	C	10345.77	.	AC=2;AF=1.00;AN=2;DB;DP=488;set=Intersection	GT:AD:AF:DP	1/1:30,427:0.93:457
chr5	177027076	rs145156383	G	GCGGCGGACC	151.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.259;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.64;ReadPosRankSum=-0.143;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:7,5:0.42:12
chr5	177027110	rs28707336	C	T	140.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr5	177031348	rs11537644	T	C	3824.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:150,170:0.53:320
chr5	177031602	rs28499092	C	G	5639.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr5	177031948	rs55763804	G	A	6539.77	.	AC=1;AF=0.500;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	0/1:159,167:0.51:326
chr5	177031954	rs28742937	A	G	6496.77	.	AC=1;AF=0.500;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	0/1:193,176:0.48:369
chr5	177031967	rs28698736	T	C	19123.77	.	AC=2;AF=1.00;AN=2;DB;DP=482;set=Intersection	GT:AD:AF:DP	1/1:0,477:1.00:477
chr5	177035488	rs67877012	G	GC	153.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.932;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=7.136;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.90;ReadPosRankSum=0.311;SOR=0.561;set=HC	GT:AD:AF:DP	0/1:145,26:0.15:171
chr5	177035964	rs729459	T	C	7894.77	.	AC=1;AF=0.500;AN=2;DB;DP=738;set=Intersection	GT:AD:AF:DP	0/1:348,388:0.53:736
chr5	177036043	rs6600953	A	G	10888.77	.	AC=2;AF=1.00;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	1/1:0,400:1.00:400
chr5	177053334	rs5013573	T	C	3660.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:1,123:0.99:124
chr5	177054649	rs72309277	ATT	A,AT	2067.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.257;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=2.713;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.86;MQRankSum=2.760;QD=14.66;ReadPosRankSum=1.190;SOR=1.209;set=HC	GT:AD:AF:DP	1/2:13,78,50:0.55,0.35:141
chr5	177054672	rs7728458	T	C	5477.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr5	177058525	rs62398479	A	G	4724.77	.	AC=1;AF=0.500;AN=2;DB;DP=469;set=Intersection	GT:AD:AF:DP	0/1:239,226:0.49:465
chr5	177058655	rs6876792	A	G	19030.77	.	AC=2;AF=1.00;AN=2;DB;DP=713;set=Intersection	GT:AD:AF:DP	1/1:0,711:1.00:711
chr5	177058766	rs2334991	G	A	6644.77	.	AC=1;AF=0.500;AN=2;DB;DP=556;set=Intersection	GT:AD:AF:DP	0/1:254,299:0.54:553
chr5	177099274	.	C	A	388.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.807;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=44.48;MQRankSum=-3.845;QD=15.55;ReadPosRankSum=-1.209;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:6,19:0.76:25
chr5	177161891	rs140979906	A	G	2617.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.176;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=5.265;MLEAC=2;MLEAF=1.000;MQ=42.90;MQRankSum=-2.673;QD=30.09;ReadPosRankSum=-0.869;SOR=3.339;set=HC	GT:AD:AF:DP	1/1:2,85:0.98:87
chr5	177166053	rs4079422	G	A	2418.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:119,118:0.50:237
chr5	177180012	rs199881665	G	A	1146.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.619;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=11.569;MLEAC=1;MLEAF=0.500;MQ=41.15;MQRankSum=0.531;QD=15.09;ReadPosRankSum=-0.699;SOR=0.040;set=HC	GT:AD:AF:DP	0/1:32,44:0.58:76
chr5	177180236	rs76556918	G	A	6233.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr5	177302646	.	T	C	75.28	.	AC=2;AF=1.00;AN=2;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.31;QD=25.09;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr5	177305797	rs201185054	G	A	1257.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.83;QD=33.10;SOR=7.328;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr5	177309472	rs199793923	A	G	2144.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.868;ClippingRankSum=0.000;DB;DP=248;ExcessHet=3.0103;FS=10.454;MLEAC=1;MLEAF=0.500;MQ=46.52;MQRankSum=-5.752;QD=8.97;ReadPosRankSum=0.587;SOR=1.288;set=HC	GT:AD:AF:DP	0/1:136,103:0.43:239
chr5	177310717	rs139876295	A	G	1596.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.74;QD=29.03;SOR=2.345;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr5	177344152	rs76284623	G	T	1395.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.26;QD=27.37;SOR=0.900;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr5	177347910	rs200509090	G	C	212.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.51;QD=30.40;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr5	177347955	rs372116601	TA	T	252.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.066;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=40.14;MQRankSum=-0.650;QD=13.30;ReadPosRankSum=0.661;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:11,8:0.42:19
chr5	177347960	.	A	T	261.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.195;ClippingRankSum=0.000;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=40.13;MQRankSum=-0.683;QD=13.09;ReadPosRankSum=1.004;SOR=0.392;set=HC	GT:AD:AF:DP	0/1:12,8:0.40:20
chr5	177348037	.	C	CTTTG	3473.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.761;ClippingRankSum=0.000;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.05;MQRankSum=-0.531;QD=42.36;ReadPosRankSum=1.218;SOR=1.096;set=HC	GT:AD:AF:DP	1/1:2,80:0.98:82
chr5	177348098	rs4958970	G	A	3890.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.811;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.94;MQRankSum=-0.312;QD=42.29;ReadPosRankSum=0.442;SOR=1.105;set=HC	GT:AD:AF:DP	1/1:2,90:0.98:92
chr5	177348106	rs4958971	A	C	3915.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.739;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.91;MQRankSum=-0.335;QD=42.11;ReadPosRankSum=0.623;SOR=1.130;set=HC	GT:AD:AF:DP	1/1:2,91:0.98:93
chr5	177348150	rs4958972	C	T	3051.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.116;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=3.149;MLEAC=2;MLEAF=1.000;MQ=51.61;MQRankSum=0.183;QD=40.69;ReadPosRankSum=2.287;SOR=2.030;set=HC	GT:AD:AF:DP	1/1:2,73:0.97:75
chr5	177348155	rs4958973	A	G	3091.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.99;QD=44.81;SOR=2.139;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr5	177419967	rs1800197	C	T	1748.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:100,86:0.46:186
chr5	177422823	rs4072924	C	T	5596.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr5	177422876	rs7445271	T	C	9901.77	.	AC=2;AF=1.00;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	1/1:0,355:1.00:355
chr5	177482472	rs3088218	T	C	224.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:8,9:0.53:17
chr5	177482694	rs11953084	T	C	1478.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:132,78:0.37:210
chr5	177483118	rs11953798	T	C	2537.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:148,127:0.46:275
chr5	177483154	rs9687038	T	A	1662.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:109,82:0.43:191
chr5	177483184	rs11953029	A	G	1285.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:66,56:0.46:122
chr5	177483267	rs34145160	T	TA	191.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.980;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.59;ReadPosRankSum=2.093;SOR=0.324;set=HC	GT:AD:AF:DP	0/1:6,14:0.70:20
chr5	177547247	rs7719667	T	C	8799.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr5	177547336	rs3812082	G	A	6789.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:2,233:0.99:235
chr5	177562183	rs72536798	C	CTG	1226.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr5	177562251	rs10060446	G	A	1308.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr5	177565520	rs10657977	T	TTGTGTG	873.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.027;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.26;MQRankSum=0.426;QD=37.99;ReadPosRankSum=-0.457;SOR=0.527;set=HC	GT:AD:AF:DP	1/1:1,22:0.96:23
chr5	177570759	rs6601218	T	C	6508.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr5	177574901	rs7380934	C	G	27056.77	.	AC=2;AF=1.00;AN=2;DB;DP=983;set=Intersection	GT:AD:AF:DP	1/1:0,973:1.00:973
chr5	177613123	rs10479619	T	C	25259.77	.	AC=2;AF=1.00;AN=2;DB;DP=929;set=Intersection	GT:AD:AF:DP	1/1:0,926:1.00:926
chr5	177613544	rs2961663	C	T	6129.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr5	177613836	rs2961664	C	T	10159.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	1/1:0,374:1.00:374
chr5	177614090	rs2913782	G	C	8364.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.73;SOR=0.865;set=HC	GT:AD:AF:DP	1/1:0,187:1.00:187
chr5	177614094	rs2961665	C	G	8544.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.05;SOR=0.870;set=HC	GT:AD:AF:DP	1/1:0,194:1.00:194
chr5	177614183	rs2913783	T	C	7443.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr5	177614387	rs6886332	A	G	2603.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.97;QD=26.84;SOR=1.214;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr5	177631783	rs17080447	G	A	86.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr5	177633116	rs3812089	A	G	1027.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr5	177634401	rs7705458	T	C	1427.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr5	177636990	rs111881090	CT	C	4656.73	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr5	177637447	rs2913751	G	A	4806.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:1,174:0.99:175
chr5	177642177	rs2913748	C	T	5534.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr5	177649986	rs3749813	G	A	8717.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr5	177658625	rs3833653	CG	C	1613.73	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:63,66:0.51:129
chr5	177658883	rs2973729	C	A	2319.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:2,85:0.98:87
chr5	177658896	rs3749810	A	C	2203.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr5	177668882	rs2241581	T	C	1484.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr5	177668965	rs2241580	C	T	4756.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr5	177669413	rs2241579	T	G	18870.77	.	AC=2;AF=1.00;AN=2;DB;DP=696;set=Intersection	GT:AD:AF:DP	1/1:0,687:1.00:687
chr5	177673153	rs35716676	AGTGCAGGGACCCAGTGAG	A	1961.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr5	177674431	rs3812092	G	A	6617.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr5	177674995	rs11746830	C	T	5042.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr5	177676986	rs5873601	GCA	G	4363.73	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:1,105:0.99:106
chr5	177676990	rs201105159	A	G	2910.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:15,92:0.86:107
chr5	177688772	rs2973745	G	A	7592.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr5	177715291	rs890801	G	A	4986.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.12;QD=27.86;SOR=1.128;set=HC	GT:AD:AF:DP	1/1:0,179:1.00:179
chr5	177715302	rs5873603	CA	C	4830.73	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr5	177715477	rs2913833	G	T	4526.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr5	177715581	rs2913832	T	C	2629.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr5	178030941	.	G	GA	124.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.604;ClippingRankSum=0.000;DP=110;ExcessHet=3.0103;FS=0.965;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=2.304;QD=1.42;ReadPosRankSum=-1.218;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:67,21:0.24:88
chr5	178035585	rs501721	G	A	1183.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:42,50:0.54:92
chr5	178040919	rs560842	G	A	1525.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:56,64:0.53:120
chr5	178047536	rs72529437	GGACAGGGTA	G	2361.73	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:110,65:0.37:175
chr5	178139355	rs113805764	T	C	3376.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:215,115:0.35:330
chr5	178139379	rs201342253	CC	GT	2615.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.235;ClippingRankSum=0.000;DB;DP=281;ExcessHet=3.0103;FS=11.114;JOINED;MLEAC=1;MLEAF=0.500;MQ=57.99;MQRankSum=-10.815;QD=9.38;ReadPosRankSum=-3.328;SOR=1.300;set=HC	GT:AD:AF:DP	0/1:205,74:0.27:279
chr5	178139385	rs199620032	C	T	2197.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.940;ClippingRankSum=0.000;DB;DP=254;ExcessHet=3.0103;FS=7.346;MLEAC=1;MLEAF=0.500;MQ=57.72;MQRankSum=-12.123;QD=8.72;ReadPosRankSum=-4.082;SOR=1.189;set=HC	GT:AD:AF:DP	0/1:191,61:0.24:252
chr5	178139394	rs191516498	T	C	1656.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.710;ClippingRankSum=0.000;DB;DP=240;ExcessHet=3.0103;FS=3.529;MLEAC=1;MLEAF=0.500;MQ=57.03;MQRankSum=-13.647;QD=6.96;ReadPosRankSum=-5.477;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:184,54:0.23:238
chr5	178139442	rs1132338	T	G	703.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.412;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=35.893;MLEAC=1;MLEAF=0.500;MQ=57.62;MQRankSum=-11.054;QD=3.01;ReadPosRankSum=-2.998;SOR=2.428;set=HC	GT:AD:AF:DP	0/1:181,53:0.23:234
chr5	178140090	rs1132336	C	T	3273.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:121,149:0.55:270
chr5	178153317	rs34544499	C	CT	645.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.061;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.000;QD=6.52;ReadPosRankSum=0.996;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:47,52:0.53:99
chr5	178154174	rs56185007	CA	TG	11463.77	.	AC=1;AF=0.500;AN=2;DB;DP=820;JOINED;set=Intersection	GT:AD:AF:DP	0/1:498,314:0.39:812
chr5	178154189	rs34361107	T	TG	5366.73	.	AC=1;AF=0.500;AN=2;DB;DP=671;set=Intersection	GT:AD:AF:DP	0/1:404,222:0.35:626
chr5	178154220	rs35528027	C	T	1564.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.355;ClippingRankSum=0.000;DB;DP=373;ExcessHet=3.0103;FS=11.256;MLEAC=1;MLEAF=0.500;MQ=57.84;MQRankSum=-14.522;QD=4.22;ReadPosRankSum=-8.007;SOR=1.266;set=HC	GT:AD:AF:DP	0/1:282,89:0.24:371
chr5	178154250	rs35287913	A	G	119.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.909;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=15.938;MLEAC=1;MLEAF=0.500;MQ=58.84;MQRankSum=-11.186;QD=0.65;ReadPosRankSum=-2.450;SOR=3.407;set=HC	GT:AD:AF:DP	0/1:167,17:0.09:184
chr5	178288214	rs112879314	C	G	509.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr5	178293175	rs146176056	C	CT	2608.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.194;ClippingRankSum=0.000;DB;DP=867;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.06;MQRankSum=-17.049;QD=3.06;ReadPosRankSum=7.892;SOR=0.731;set=HC	GT:AD:AF:DP	0/1:688,165:0.19:853
chr5	178310446	rs4130052	C	T	5532.77	.	AC=1;AF=0.500;AN=2;DB;DP=634;set=Intersection	GT:AD:AF:DP	0/1:356,272:0.43:628
chr5	178358220	rs200888524	ATT	A	331.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.804;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.09;ReadPosRankSum=-0.466;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:22,19:0.46:41
chr5	178359136	rs961030	A	G	4356.77	.	AC=1;AF=0.500;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	0/1:189,196:0.51:385
chr5	178369673	rs10060764	T	C	1631.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:62,76:0.55:138
chr5	178391860	rs6867221	G	A	4823.77	.	AC=1;AF=0.500;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	0/1:168,225:0.57:393
chr5	178391902	rs12719860	A	C	3562.77	.	AC=1;AF=0.500;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	0/1:225,172:0.43:397
chr5	178395850	rs11741688	G	C	2124.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:131,98:0.43:229
chr5	178396742	rs4700759	G	C	4992.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr5	178401552	rs4700991	C	T	1047.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:54,45:0.45:99
chr5	178401555	rs7728828	G	A	1270.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:47,59:0.56:106
chr5	178401610	rs11740252	C	T	2027.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:95,103:0.52:198
chr5	178401703	rs11740277	C	G	2616.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:144,132:0.48:276
chr5	178404573	.	C	CT	202.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.348;ClippingRankSum=0.000;DP=130;ExcessHet=3.0103;FS=0.939;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=1.615;QD=2.05;ReadPosRankSum=-0.493;SOR=0.523;set=HC	GT:AD:AF:DP	0/1:74,25:0.25:99
chr5	178407292	rs2856351	C	T	11169.77	.	AC=2;AF=1.00;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	1/1:2,414:1.00:416
chr5	178410738	rs903988	C	T	9152.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:0,338:1.00:338
chr5	178410839	rs2856348	G	A	3338.77	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:183,161:0.47:344
chr5	178411290	rs11279361	AGCACGCCTC	A	8504.73	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr5	178411315	rs2645341	C	T	8727.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr5	178412273	rs35715923	T	C	6947.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;MQ=59.99;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr5	178412592	rs6880010	T	C	1202.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr5	178412631	rs138093440	A	G	1609.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.497;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=3.240;MLEAC=1;MLEAF=0.500;MQ=59.81;MQRankSum=-1.935;QD=29.27;ReadPosRankSum=-0.910;SOR=0.260;set=HC	GT:AD:AF:DP	0/1:16,39:0.71:55
chr5	178412636	rs141019077	A	G	1674.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.964;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=7.145;MLEAC=1;MLEAF=0.500;MQ=59.83;MQRankSum=-1.888;QD=27.46;ReadPosRankSum=-1.066;SOR=0.140;set=HC	GT:AD:AF:DP	0/1:16,45:0.74:61
chr5	178412716	rs11950921	C	A	710.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.694;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=0.712;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=1.661;QD=4.87;ReadPosRankSum=-4.218;SOR=0.812;set=HC	GT:AD:AF:DP	0/1:108,38:0.26:146
chr5	178413816	rs2256966	T	C	6336.77	.	AC=1;AF=0.500;AN=2;DB;DP=697;set=Intersection	GT:AD:AF:DP	0/1:371,318:0.46:689
chr5	178413947	rs11746675	T	C	4428.77	.	AC=1;AF=0.500;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	0/1:202,202:0.50:404
chr5	178414565	rs2645340	C	T	2824.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr5	178415937	rs2067011	A	G	740.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:46,35:0.43:81
chr5	178415982	rs4701014	A	G	5588.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr5	178416063	rs2645339	G	A	5073.77	.	AC=1;AF=0.500;AN=2;DB;DP=507;set=Intersection	GT:AD:AF:DP	0/1:257,248:0.49:505
chr5	178416203	rs143495088	CCCCTCCCCA	C	2828.73	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:108,83:0.43:191
chr5	178416288	rs2071246	G	A	5920.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr5	178419279	rs11283410	G	GGGCAAGGTCT	9950.73	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr5	178419288	rs2645335	C	T	9616.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr5	178419396	rs11449973	A	AC	11756.73	.	AC=2;AF=1.00;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	1/1:1,370:1.00:371
chr5	178421770	rs2645329	T	G	1067.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:67,53:0.44:120
chr5	178451854	rs35568336	A	G	308.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	178451932	rs34881171	C	T	1978.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr5	178455247	rs2047354	T	C	704.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	178459169	rs10516150	G	C	961.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr5	178459283	rs17078988	A	G	3134.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr5	178459426	rs17078991	A	C	6567.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:1,240:1.00:241
chr5	178503338	rs4701030	A	C	5430.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr5	178504338	rs6601010	G	A	500.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr5	178507069	rs1445846	T	C	6746.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:1,240:1.00:241
chr5	178507090	rs1445845	G	A	4364.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr5	178552899	rs78566312	C	T	845.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:33,34:0.51:67
chr5	178553185	rs2303643	G	A	5363.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:2,205:0.99:207
chr5	178555196	rs1427845	T	C	2046.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:106,101:0.49:207
chr5	178634619	rs423552	C	T	21307.77	.	AC=2;AF=1.00;AN=2;DB;DP=814;set=Intersection	GT:AD:AF:DP	1/1:0,786:1.00:786
chr5	178768439	rs55714836	T	C	1315.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr5	178768468	rs142165776	G	A	554.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:17,25:0.60:42
chr5	178770759	rs2271213	C	G	7252.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr5	178770981	rs2271212	A	G	19164.77	.	AC=2;AF=1.00;AN=2;DB;DP=704;set=Intersection	GT:AD:AF:DP	1/1:1,699:1.00:700
chr5	178949465	rs28646142	G	A	273.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.537;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=4.829;MLEAC=1;MLEAF=0.500;MQ=54.80;MQRankSum=-7.181;QD=3.91;ReadPosRankSum=2.733;SOR=1.795;set=HC	GT:AD:AF:DP	0/1:55,15:0.21:70
chr5	178949499	rs28689892	C	T	742.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:105,39:0.27:144
chr5	178949560	rs28413987	AG	GT	8349.77	.	AC=1;AF=0.500;AN=2;DB;DP=489;JOINED;set=Intersection	GT:AD:AF:DP	0/1:269,218:0.45:487
chr5	178949580	rs71596435	C	T	6562.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.124;ClippingRankSum=0.000;DB;DP=616;ExcessHet=3.0103;FS=1.743;MLEAC=1;MLEAF=0.500;MQ=58.20;MQRankSum=2.674;QD=10.72;ReadPosRankSum=1.123;SOR=0.575;set=HC	GT:AD:AF:DP	0/1:301,311:0.51:612
chr5	178949612	rs28550616	CA	TG	12281.77	.	AC=1;AF=0.500;AN=2;DB;DP=716;JOINED;set=Intersection	GT:AD:AF:DP	0/1:390,324:0.45:714
chr5	178949781	rs28420183	A	G	2415.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.84;QD=32.21;SOR=4.949;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr5	178950017	rs139030805	T	C	63.84	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=41.19;MQRankSum=0.524;QD=12.77;ReadPosRankSum=-0.524;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:1,4:0.80:5
chr5	178950207	rs142217072	A	G	213.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.150;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=45.75;MQRankSum=2.208;QD=17.81;ReadPosRankSum=1.562;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:3,9:0.75:12
chr5	178950263	rs34793499	GA	G	93.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.478;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=6.107;MLEAC=1;MLEAF=0.500;MQ=42.50;MQRankSum=2.179;QD=5.21;ReadPosRankSum=1.087;SOR=0.050;set=HC	GT:AD:AF:DP	0/1:11,7:0.39:18
chr5	178951351	rs145029017	A	C	768.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.236;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=1.874;MLEAC=1;MLEAF=0.500;MQ=44.36;MQRankSum=-2.946;QD=18.30;ReadPosRankSum=-0.692;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:14,28:0.67:42
chr5	178951365	rs138816614	C	G	1153.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.337;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=45.08;MQRankSum=-4.088;QD=17.48;ReadPosRankSum=0.820;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:25,41:0.62:66
chr5	178951598	rs4701188	G	A	30123.77	.	AC=2;AF=1.00;AN=2;DB;DP=1146;set=Intersection	GT:AD:AF:DP	1/1:0,1122:1.00:1122
chr5	178977513	.	T	TGCCCGCCCGCCCCCACCCCGC	289.75	.	AC=2;AF=1.00;AN=2;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.36;QD=72.44;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr5	178986978	rs7704349	C	G	6529.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr5	178989386	rs28611242	A	G	232.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:18,14:0.44:32
chr5	178989473	rs28510162	T	G	1415.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:57,62:0.52:119
chr5	178996435	rs11743261	A	G	3779.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:173,174:0.50:347
chr5	179012968	rs13361148	A	G	1506.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:101,79:0.44:180
chr5	179020622	rs4701135	T	C	5232.77	.	AC=1;AF=0.500;AN=2;DB;DP=453;set=Intersection	GT:AD:AF:DP	0/1:213,235:0.52:448
chr5	179021761	rs57540208	CAAAA	C	1809.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.118;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=13.787;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.10;ReadPosRankSum=1.258;SOR=2.468;set=HC	GT:AD:AF:DP	0/1:27,73:0.73:100
chr5	179021982	rs28685239	G	A	5273.77	.	AC=1;AF=0.500;AN=2;DB;DP=509;set=Intersection	GT:AD:AF:DP	0/1:252,249:0.50:501
chr5	179025550	rs4701136	A	G	1570.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr5	179025789	rs72824522	G	A	1834.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:121,93:0.43:214
chr5	179032755	rs6877888	C	T	2817.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr5	179034368	rs72824531	G	A	239.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:22,14:0.39:36
chr5	179034707	rs72824532	C	T	551.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:29,28:0.49:57
chr5	179036268	rs60104959	A	C	1368.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:48,41:0.46:89
chr5	179036433	rs17355294	G	A	5360.77	.	AC=1;AF=0.500;AN=2;DB;DP=505;set=Intersection	GT:AD:AF:DP	0/1:241,262:0.52:503
chr5	179036608	rs8087	T	A	2486.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr5	179041785	.	GAAAA	G	1038.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.335;ClippingRankSum=0.000;DP=53;ExcessHet=3.0103;FS=2.667;MLEAC=1;MLEAF=0.500;MQ=60.41;MQRankSum=0.789;QD=22.10;ReadPosRankSum=0.126;SOR=0.264;set=HC	GT:AD:AF:DP	0/1:15,32:0.68:47
chr5	179042400	rs61408162	C	T	308.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:12,15:0.56:27
chr5	179043075	rs4515257	T	C	11818.77	.	AC=2;AF=1.00;AN=2;DB;DP=439;set=Intersection	GT:AD:AF:DP	1/1:0,434:1.00:434
chr5	179043982	rs34734159	C	CAA	9615.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.640;ClippingRankSum=0.000;DB;DP=613;ExcessHet=3.0103;FS=0.521;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.818;QD=16.22;ReadPosRankSum=1.188;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:310,283:0.48:593
chr5	179048205	rs4701144	T	C	3113.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:145,152:0.51:297
chr5	179049138	rs4301193	C	A	1307.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr5	179069309	rs6887611	G	C	10729.77	.	AC=2;AF=1.00;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	1/1:0,380:1.00:380
chr5	179069551	rs12519906	G	A	8037.77	.	AC=1;AF=0.500;AN=2;DB;DP=731;set=Intersection	GT:AD:AF:DP	0/1:353,370:0.51:723
chr5	179069912	rs75942553	C	T	12611.77	.	AC=1;AF=0.500;AN=2;DB;DP=1396;set=Intersection	GT:AD:AF:DP	0/1:756,635:0.46:1391
chr5	179071331	rs115574219	G	A	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.876;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=6.264;MLEAC=1;MLEAF=0.500;MQ=44.94;MQRankSum=-2.362;QD=3.34;ReadPosRankSum=-0.099;SOR=2.833;set=HC	GT:AD:AF:DP	0/1:8,3:0.27:11
chr5	179078378	rs55837909	C	T	2718.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:102,122:0.54:224
chr5	179078391	rs57380196	C	T	1696.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:97,82:0.46:179
chr5	179078940	rs6882398	T	C	29329.77	.	AC=2;AF=1.00;AN=2;DB;DP=1087;set=Intersection	GT:AD:AF:DP	1/1:0,1080:1.00:1080
chr5	179079104	rs113370076	G	A	3127.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:123,128:0.51:251
chr5	179105523	rs62406695	C	G	4231.77	.	AC=1;AF=0.500;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	0/1:193,200:0.51:393
chr5	179105533	rs75628693	G	C	4261.77	.	AC=1;AF=0.500;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	0/1:217,206:0.49:423
chr5	179125398	rs4701195	C	G	1301.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:30,59:0.66:89
chr5	179125935	rs4701196	C	A	458.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:20,20:0.50:40
chr5	179126090	rs1134924	C	T	2210.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr5	179132612	rs7735702	T	A	1739.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:77,76:0.50:153
chr5	179136137	rs72809766	C	T	1643.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.398;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=0.625;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.34;ReadPosRankSum=0.250;SOR=0.795;set=HC	GT:AD:AF:DP	0/1:68,77:0.53:145
chr5	179136137	.	CA	TG	900	.	AC=1;AF=0.500;AN=2;BRF=0.46;FR=0.5000;HP=1;HapScore=2;MGOF=2;MMLQ=28;MQ=59.99;NF=24;NR=37;PP=900;QD=15.6306208994;SC=GGGCCGGGTGCAGTGGCTCAC;SbPval=0.49;Source=Platypus;TC=107;TCF=41;TCR=66;TR=61;WE=179136146;WS=179136127;set=Platypus	GT:AD:AF:DP	0/1:46,61:0.57:107
chr5	179136138	rs6601068	A	G	5214.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.21;SOR=1.079;set=HC	GT:AD:AF:DP	1/1:0,144:1.00:144
chr5	179142825	.	G	GT	58.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.584;ClippingRankSum=0.000;DP=143;ExcessHet=3.0103;FS=1.004;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.43;ReadPosRankSum=0.830;SOR=0.463;set=HC	GT:AD:AF:DP	0/1:114,22:0.16:136
chr5	179146829	.	G	GT	159.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.426;ClippingRankSum=0.000;DP=146;ExcessHet=3.0103;FS=2.080;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.814;QD=1.58;ReadPosRankSum=-0.124;SOR=0.947;set=HC	GT:AD:AF:DP	0/1:77,24:0.24:101
chr5	179147641	rs59666900	C	T	1852.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:116,87:0.43:203
chr5	179150788	.	G	GT	109.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.463;ClippingRankSum=0.000;DP=160;ExcessHet=3.0103;FS=4.614;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.80;ReadPosRankSum=0.585;SOR=0.340;set=HC	GT:AD:AF:DP	0/1:112,26:0.19:138
chr5	179153797	rs7734102	C	T	3736.77	.	AC=1;AF=0.500;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	0/1:171,180:0.51:351
chr5	179193598	rs3797776	C	T	6540.77	.	AC=1;AF=0.500;AN=2;DB;DP=670;set=Intersection	GT:AD:AF:DP	0/1:356,306:0.46:662
chr5	179201847	rs6895902	G	A	2858.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:142,138:0.49:280
chr5	179218842	rs55654737	G	A	7527.77	.	AC=1;AF=0.500;AN=2;DB;DP=694;set=Intersection	GT:AD:AF:DP	0/1:325,358:0.52:683
chr5	179223238	rs2306795	T	C	209.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:4,11:0.73:15
chr5	179227154	rs72807339	G	A	3921.77	.	AC=1;AF=0.500;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	0/1:219,183:0.46:402
chr5	179251455	rs72807347	C	G	1546.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:34,59:0.63:93
chr5	179260009	rs2241349	G	A	2528.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:118,119:0.50:237
chr5	179260153	rs4935	C	T	9595.77	.	AC=2;AF=1.00;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	1/1:1,362:1.00:363
chr5	179260213	rs4797	G	A	1899.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:77,84:0.52:161
chr5	179260478	rs2241350	C	G	777.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:33,30:0.48:63
chr5	179260494	rs155787	G	A	2980.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr5	179260528	rs155788	T	C	1666.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:73,77:0.51:150
chr5	179264132	rs1060271	T	G	3886.77	.	AC=1;AF=0.500;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	0/1:214,187:0.47:401
chr5	179264731	rs10277	T	C	9629.77	.	AC=2;AF=1.00;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	1/1:0,363:1.00:363
chr5	179264915	rs1065154	G	T	2047.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr5	179267783	rs248247	G	A	3280.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:142,157:0.53:299
chr5	179267949	rs248248	T	C	5005.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:2,192:0.99:194
chr5	179269011	rs61736195	G	C	3895.77	.	AC=1;AF=0.500;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	0/1:164,190:0.54:354
chr5	179269193	rs72813734	G	A	737.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:35,29:0.45:64
chr5	179275092	rs77603125	T	C	4461.77	.	AC=1;AF=0.500;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	0/1:188,203:0.52:391
chr5	179278466	rs4700702	A	G	1674.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:49,74:0.60:123
chr5	179278561	rs72813740	G	A	359.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:16,15:0.48:31
chr5	179280379	rs1650893	T	C	8996.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:0,341:1.00:341
chr5	179285752	rs10060182	G	A	3538.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:167,155:0.48:322
chr5	179287207	rs148609553	CGT	C	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.675;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=1.943;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.49;ReadPosRankSum=-1.446;SOR=0.259;set=HC	GT:AD:AF:DP	0/1:68,9:0.12:77
chr5	179287288	rs35590515	G	GA	1867.73	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:130,113:0.47:243
chr5	179287576	rs248254	C	G	25782.77	.	AC=2;AF=1.00;AN=2;DB;DP=606;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.11;QD=43.26;SOR=0.964;set=HC	GT:AD:AF:DP	1/1:0,596:1.00:596
chr5	179287585	rs416974	G	C	25108.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=556;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.12;QD=45.74;SOR=1.033;set=HC	GT:AD:AF:DP	1/1:0,549:1.00:549
chr5	179287586	rs378684	C	T	24892.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=551;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.12;QD=45.67;SOR=1.035;set=HC	GT:AD:AF:DP	1/1:0,545:1.00:545
chr5	179287622	rs1611076	G	GTA	17775.73	.	AC=2;AF=1.00;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	1/1:0,399:1.00:399
chr5	179290845	rs30386	T	G	18556.77	.	AC=2;AF=1.00;AN=2;DB;DP=685;set=Intersection	GT:AD:AF:DP	1/1:4,672:0.99:676
chr5	179291279	rs172056	A	G	2528.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr5	179298342	rs248252	G	C	901.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr5	179299867	rs532795	T	C	2369.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr5	179305655	rs3734003	C	T	1844.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr5	179334857	rs185073	A	G	5157.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr5	179405399	rs27019	C	G	660.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:54,31:0.36:85
chr5	179407229	rs28011	C	T	2964.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:164,137:0.46:301
chr5	179498595	rs3749821	C	T	3174.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:137,152:0.53:289
chr5	179498658	rs3828698	G	T	1676.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:74,83:0.53:157
chr5	179528351	rs67139455	TG	T	1708.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.707;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.39;MQRankSum=0.446;QD=37.97;ReadPosRankSum=-0.548;SOR=3.352;set=HC	GT:AD:AF:DP	1/1:3,42:0.93:45
chr5	179528359	rs113499659	G	C	1245.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.563;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.37;MQRankSum=0.698;QD=24.43;ReadPosRankSum=-0.329;SOR=1.054;set=HC	GT:AD:AF:DP	0/1:9,42:0.82:51
chr5	179528991	.	TCCCACCTCGGCGCGAAGACTCACCTTAGAGCTTTCCATCCCAAGCAGCCCCCAGGC	T	2812.73	.	AC=1;AF=0.500;AN=2;DP=248;set=Intersection	GT:AD:AF:DP	0/1:164,80:0.33:244
chr5	179529124	rs7725201	G	A	3721.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:113,175:0.61:288
chr5	179542285	.	CT	C	1796	.	AC=1;AF=0.500;AN=2;BRF=0.5;FR=0.5000;HP=5;HapScore=1;MGOF=7;MMLQ=21;MQ=59.81;NF=48;NR=37;PP=1796;QD=21.4941176471;SC=AGGTGGCCTCCTTTTTAAAAA;SbPval=0.52;Source=Platypus;TC=212;TCF=120;TCR=92;TR=85;WE=179542301;WS=179542275;set=Platypus	GT:AD:AF:DP	1/0:127,85:0.40:212
chr5	179542290	rs4700873	T	A	2665.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.899;ClippingRankSum=0.000;DB;DP=421;ExcessHet=3.0103;FS=0.459;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.00;ReadPosRankSum=2.361;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:212,169:0.44:381
chr5	179542290	.	T	TA	1032	.	AC=1;AF=0.500;AN=2;BRF=0.5;FR=0.5000;HP=17;HapScore=1;MGOF=7;MMLQ=22;MQ=59.84;NF=34;NR=37;PP=1032;QD=14.5774647887;SC=GCCTCCTTTTTAAAAAAAAAA;SbPval=0.52;Source=Platypus;TC=223;TCF=104;TCR=119;TR=71;WE=179542301;WS=179542275;set=Platypus	GT:AD:AF:DP	1/0:152,71:0.32:223
chr5	179545562	rs62405054	C	G	551.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:34,29:0.46:63
chr5	179548343	rs13160214	C	T	555.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:22,21:0.49:43
chr5	179554522	rs7728345	C	T	854.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:26,36:0.58:62
chr5	179555407	rs13354066	T	C	1239.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:36,55:0.60:91
chr5	179555654	rs6895192	C	T	1717.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:110,90:0.45:200
chr5	179563359	rs55638756	C	T	3182.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:154,152:0.50:306
chr5	179563435	rs11546322	T	C	4736.77	.	AC=1;AF=0.500;AN=2;DB;DP=506;set=Intersection	GT:AD:AF:DP	0/1:269,233:0.46:502
chr5	179563532	rs2890346	G	C	2573.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:101,122:0.55:223
chr5	179565071	rs4700878	G	C	3026.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr5	179565136	rs4700715	C	A	1645.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr5	179663614	rs6601104	C	T	858.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr5	179665269	.	C	CA	136.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.015;ClippingRankSum=0.000;DP=103;ExcessHet=3.0103;FS=3.533;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.937;QD=1.47;ReadPosRankSum=0.477;SOR=1.188;set=HC	GT:AD:AF:DP	0/1:73,20:0.22:93
chr5	179667933	rs6895740	C	G	1296.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:61,55:0.47:116
chr5	179675052	rs55756747	C	A	660.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:29,27:0.48:56
chr5	179686378	rs33928286	G	A	13194.77	.	AC=2;AF=1.00;AN=2;DB;DP=510;set=Intersection	GT:AD:AF:DP	1/1:2,502:1.00:504
chr5	179691951	rs34234996	ACTT	A	56.73	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:6,3:0.33:9
chr5	179707194	rs7715540	G	A	911.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr5	179728707	rs4700931	T	C	2312.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:118,115:0.49:233
chr5	179729519	rs1035411	A	G	3254.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:145,161:0.53:306
chr5	179734200	rs73343449	A	G	2764.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:137,137:0.50:274
chr5	179751390	rs1559113	A	G	186.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:26,11:0.30:37
chr5	179755071	rs200885267	CT	C	277.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.277;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.67;ReadPosRankSum=1.373;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:19,30:0.61:49
chr5	179763398	rs6891083	T	G	5680.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr5	179765467	rs55946431	C	T	1359.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr5	179779339	.	GAAA	G	1007.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.711;ClippingRankSum=0.000;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.84;ReadPosRankSum=2.463;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:56,58:0.51:114
chr5	179780292	rs199818683	CCTCCGTGGG	C	1192.73	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:59,37:0.39:96
chr5	179780340	rs5873687	GT	G	3335.73	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr5	179780382	.	AGGGCGGGGAAG	A,AGGGGCGGGGAAG	1765.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=52;set=Intersection	GT:AF:DP	1/2:0.68,0.32:34
chr5	179980302	rs10516143	T	A	1090.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:45,47:0.51:92
chr5	179980527	rs11738129	A	G	2026.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:94,93:0.50:187
chr5	179991841	rs6874985	A	G	184.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:3,7:0.70:10
chr5	179994815	rs146190811	CTG	C	194.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.610;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=1.157;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=2.372;QD=1.72;ReadPosRankSum=-0.014;SOR=0.465;set=HC	GT:AD:AF:DP	0/1:97,16:0.14:113
chr5	179996111	rs6877400	C	T	8390.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chr5	179998454	rs13164597	C	T	3666.77	.	AC=1;AF=0.500;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	0/1:180,172:0.49:352
chr5	180036871	rs2242219	C	G	1424.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:76,71:0.48:147
chr5	180038248	rs35683852	T	TC	9146.73	.	AC=1;AF=0.500;AN=2;DB;DP=689;set=Intersection	GT:AD:AF:DP	0/1:331,349:0.51:680
chr5	180038545	rs744283	A	G	767.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:26,36:0.58:62
chr5	180039606	rs1130379	C	T	3886.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:163,185:0.53:348
chr5	180041001	rs421662	G	C	24401.77	.	AC=2;AF=1.00;AN=2;DB;DP=540;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.95;SOR=1.342;set=HC	GT:AD:AF:DP	1/1:0,531:1.00:531
chr5	180041008	rs366388	T	C	25570.77	.	AC=2;AF=1.00;AN=2;DB;DP=609;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.69;SOR=1.212;set=HC	GT:AD:AF:DP	1/1:0,599:1.00:599
chr5	180041208	rs659268	T	C	4224.77	.	AC=1;AF=0.500;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	0/1:220,214:0.49:434
chr5	180043388	rs1130378	G	A	7954.77	.	AC=1;AF=0.500;AN=2;DB;DP=784;set=Intersection	GT:AD:AF:DP	0/1:391,388:0.50:779
chr5	180043731	rs3765095	C	A	2149.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:90,99:0.52:189
chr5	180045700	rs3214903	G	GGGTTACCCTA	2200.73	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:111,54:0.33:165
chr5	180046209	rs446003	C	T	1569.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.757;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=3.228;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.71;ReadPosRankSum=-0.815;SOR=1.030;set=HC	GT:AD:AF:DP	0/1:66,68:0.51:134
chr5	180046344	rs448012	G	C	3298.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:131,152:0.54:283
chr5	180046426	rs70973949	C	CTGGCCGCTTAGCTAAGGCACAG	2148.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.879;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=13.816;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.19;ReadPosRankSum=-0.484;SOR=1.749;set=HC	GT:AD:AF:DP	0/1:71,54:0.43:125
chr5	180046492	rs201407038	CAG	C	3291.73	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:86,87:0.50:173
chr5	180047412	rs382266	T	C	2335.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:74,94:0.56:168
chr5	180047739	.	CGT	C	197.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.702;ClippingRankSum=0.000;DP=279;ExcessHet=3.0103;FS=0.828;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=2.623;QD=0.95;ReadPosRankSum=-1.246;SOR=0.556;set=HC	GT:AD:AF:DP	0/1:184,25:0.12:209
chr5	180047863	rs423086	C	G	1958.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr5	180048035	rs2242215	T	C	7031.77	.	AC=1;AF=0.500;AN=2;DB;DP=606;set=Intersection	GT:AD:AF:DP	0/1:281,309:0.52:590
chr5	180048056	rs2242214	C	T	8357.77	.	AC=1;AF=0.500;AN=2;DB;DP=766;set=Intersection	GT:AD:AF:DP	0/1:355,388:0.52:743
chr5	180048986	rs10635355	G	GCCTC	2178.73	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:2,53:0.96:55
chr5	180049927	rs60877472	CA	C	83.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.580;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=3.195;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.16;ReadPosRankSum=0.181;SOR=0.285;set=HC	GT:AD:AF:DP	0/1:60,12:0.17:72
chr5	180049928	rs307828	A	C	1282.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:14,58:0.81:72
chr5	180053307	rs402647	A	G	4050.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:1,142:0.99:143
chr5	180053387	rs4700964	C	T	981.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr5	180055862	rs383985	T	G	5729.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.84;SOR=2.284;set=HC	GT:AD:AF:DP	1/1:0,125:1.00:125
chr5	180055862	.	TGG	GGA	2947	.	AC=2;AF=1.00;AN=2;BRF=0.44;FR=1.0000;HP=6;HapScore=1;MGOF=1;MMLQ=24;MQ=60.0;NF=76;NR=21;PP=2947;QD=20;SC=GCGGGGTCGGTGGGGAGCCAG;SbPval=0.6;Source=Platypus;TC=105;TCF=81;TCR=24;TR=97;WE=180055872;WS=180055852;set=Platypus	GT:AD:AF:DP	1/1:8,97:0.92:105
chr5	180055864	rs438464	G	A	5729.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.74;SOR=2.249;set=HC	GT:AD:AF:DP	1/1:0,131:1.00:131
chr5	180056192	rs399108	T	C	4473.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr5	180056620	rs414348	G	A	3296.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr5	180057293	rs34221241	T	C	4341.77	.	AC=1;AF=0.500;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	0/1:191,210:0.52:401
chr5	180076403	rs114838148	C	T	878.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:29,43:0.60:72
chr5	180165983	rs2054696	G	C	2379.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr5	180166461	rs10464105	C	G	11132.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	1/1:0,381:1.00:381
chr5	180218668	rs634501	A	G	19793.77	.	AC=2;AF=1.00;AN=2;DB;DP=772;set=Intersection	GT:AD:AF:DP	1/1:2,754:1.00:756
chr5	180276402	rs168726	C	T	12041.77	.	AC=2;AF=1.00;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	1/1:0,422:1.00:422
chr5	180278393	rs705441	C	G	19330.77	.	AC=2;AF=1.00;AN=2;DB;DP=715;set=Intersection	GT:AD:AF:DP	1/1:2,701:1.00:703
chr5	180288239	rs2121117	G	A	4142.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr5	180432912	rs35157246	C	T	1603.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:84,71:0.46:155
chr5	180482303	rs112262574	T	TA	455.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.106;ClippingRankSum=0.000;DB;DP=326;ExcessHet=3.0103;FS=0.556;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.000;QD=1.47;ReadPosRankSum=1.217;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:243,66:0.21:309
chr5	180486224	rs7379015	T	G	1743.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr5	180486247	rs6601166	G	T	2442.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr5	180486785	rs10068763	G	C	21654.77	.	AC=2;AF=1.00;AN=2;DB;DP=829;set=Intersection	GT:AD:AF:DP	1/1:1,821:1.00:822
chr5	180486841	rs10054109	C	T	16250.77	.	AC=2;AF=1.00;AN=2;DB;DP=641;set=Intersection	GT:AD:AF:DP	1/1:0,636:1.00:636
chr5	180486891	rs33927456	C	CG	8489.73	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:6,284:0.98:290
chr5	180552412	rs7724668	G	C	958.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr5	180582604	rs2546423	A	G	4544.77	.	AC=1;AF=0.500;AN=2;DB;DP=497;set=Intersection	GT:AD:AF:DP	0/1:261,227:0.47:488
chr5	180582980	rs7380309	G	A	1660.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:91,79:0.46:170
chr5	180583039	.	G	GTTCTTTCTTTCTTTCTTTCTTTCT	629.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.905;ClippingRankSum=0.000;DP=64;ExcessHet=3.0103;FS=2.124;MLEAC=1;MLEAF=0.500;MQ=60.83;MQRankSum=1.593;QD=22.49;ReadPosRankSum=0.512;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:12,16:0.57:28
chr5	180666294	rs41285569	T	C	1594.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:61,69:0.53:130
chr5	180667205	.	A	T	170.77	.	AC=1;AF=0.500;AN=2;DP=26;set=Intersection	GT:AD:AF:DP	0/1:16,9:0.36:25
chr5	180668426	.	CAA	C	247.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.213;ClippingRankSum=0.000;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=0.000;QD=2.25;ReadPosRankSum=1.806;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:87,23:0.21:110
chr6	292694	rs3832447	GC	G	9342.73	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr6	311797	.	G	GT	617.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.517;ClippingRankSum=0.000;DP=266;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.40;ReadPosRankSum=1.864;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:192,65:0.25:257
chr6	312029	rs150517961	TAATG	T	6044.73	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:109,156:0.59:265
chr6	335175	rs2671431	A	T	5524.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:1,204:1.00:205
chr6	335251	rs3757305	T	C	5859.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.648;ClippingRankSum=0.000;DB;DP=273;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.54;ReadPosRankSum=0.133;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:121,151:0.56:272
chr6	335251	.	TGT	CGC	2819	.	AC=1;AF=0.500;AN=2;BRF=0.42;FR=0.5000;HP=1;HapScore=2;MGOF=21;MMLQ=24;MQ=60.0;NF=37;NR=42;PP=2819;QD=20;SC=ACTGTGAAGTTGTCAGAGCTC;SbPval=0.6;Source=Platypus;TC=172;TCF=83;TCR=89;TR=79;WE=335261;WS=335241;set=Platypus	GT:AD:AF:DP	1/0:93,79:0.46:172
chr6	335253	rs3757306	T	C	5859.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.384;ClippingRankSum=0.000;DB;DP=269;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.86;ReadPosRankSum=0.317;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:120,148:0.55:268
chr6	335268	rs4959733	C	T	2797.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:121,133:0.52:254
chr6	346429	rs10642379	G	GACACAC	3949.73	.	AC=1;AF=0.500;AN=2;DB;DP=688;set=Intersection	GT:AD:AF:DP	0/1:318,155:0.33:473
chr6	348051	rs1877172	A	G	1513.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:38,58:0.60:96
chr6	348080	rs2797333	A	G	4318.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr6	348906	rs11242812	G	A	1804.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:51,73:0.59:124
chr6	350940	rs11408655	T	TA	5680.73	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:111,177:0.61:288
chr6	367243	rs7776416	T	C	1409.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:126,72:0.36:198
chr6	367352	rs7764099	C	T	3719.77	.	AC=1;AF=0.500;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	0/1:255,190:0.43:445
chr6	367552	rs12527701	C	T	946.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:101,50:0.33:151
chr6	394920	.	G	A	6789.77	.	AC=2;AF=1.00;AN=2;DP=266;set=Intersection	GT:AD:AF:DP	1/1:4,258:0.98:262
chr6	406552	rs56116020	C	CA	460.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.04;SOR=1.721;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr6	497520	rs6909878	G	C	5431.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr6	554045	rs11399543	C	CT	398.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:3,23:0.88:26
chr6	556147	rs2476844	C	T	725.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr6	564515	rs2277096	G	T	2272.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr6	572480	rs2073009	G	A	2310.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr6	572714	rs12154040	C	T	720.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr6	597871	rs4960092	G	A	482.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr6	599042	rs2294664	T	A	2617.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr6	601244	rs1766844	A	G	1324.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr6	656143	rs1211554	C	A	3893.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:1,143:0.99:144
chr6	1053665	rs4960488	T	C	3349.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr6	1101323	rs2076494	T	C	676.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr6	1101608	rs7744389	G	A	777.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr6	1102488	rs7749569	G	A	693.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr6	1313117	rs9502889	A	C	1633.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.99;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr6	1313121	rs9502890	A	C	1699.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.73;SOR=0.798;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr6	1313952	rs992327	A	G	772.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:1,26:0.96:27
chr6	1313980	rs147255181	C	G	415.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr6	1391085	rs147426137	G	GGGC	1911.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.979;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.46;MQRankSum=0.431;QD=39.83;ReadPosRankSum=-0.491;SOR=0.780;set=HC	GT:AD:AF:DP	1/1:2,46:0.96:48
chr6	1395043	rs2293783	T	C	5337.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:2,207:0.99:209
chr6	1960335	rs1323632	C	G	779.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr6	2624053	rs17135340	T	A	1741.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr6	2675271	rs9328114	C	T	2381.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr6	2683439	rs898772	T	A	2295.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr6	2692876	rs60637072	AGG	A	47.37	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.036;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.89;ReadPosRankSum=-0.524;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:3,3:0.50:6
chr6	2692878	.	G	GAAA	46.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.674;ClippingRankSum=-0.000;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.79;ReadPosRankSum=-0.598;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:3,3:0.50:6
chr6	2948965	rs318426	C	T	3752.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr6	2953445	rs3818276	A	G	2397.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr6	2953496	rs12209811	C	G	1204.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr6	2966463	rs7775025	T	G	128.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.78;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr6	3006859	rs28383616	A	G	781.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.882;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.43;ReadPosRankSum=-0.218;SOR=0.379;set=HC	GT:AD:AF:DP	1/1:1,31:0.97:32
chr6	3010390	rs1143684	C	T	3390.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr6	3077141	rs2272990	T	C	1166.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr6	3118947	rs2231355	A	G	2226.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr6	3127702	rs111927682	T	G	1382.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:2,55:0.96:57
chr6	3232460	rs10597566	TGGGC	T	4516.73	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr6	3264671	rs13193012	T	C	598.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr6	3285286	rs10793841	A	G	3484.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr6	3287118	rs6910086	T	C	3646.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.05;SOR=2.376;set=HC	GT:AD:AF:DP	1/1:0,130:1.00:130
chr6	3290215	rs67896530	CT	C	81.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.259;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.92;ReadPosRankSum=1.660;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:13,15:0.54:28
chr6	3438738	rs12197689	G	A	4017.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr6	3439510	rs9503595	T	C	1101.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr6	3439595	rs35613438	G	GA	813.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr6	3439637	rs9502003	G	A	472.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr6	3723764	rs1045778	G	T	169.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr6	3727811	rs226959	C	G	6106.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:2,227:0.99:229
chr6	3738826	rs113644426	C	T	180.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr6	3738897	rs11390464	A	AG	719.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr6	4020336	rs9392546	C	T	1715.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr6	4020356	rs9405217	G	A	2366.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr6	4020540	rs78628853	AT	A	937.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.025;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=4.107;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.98;ReadPosRankSum=0.660;SOR=1.320;set=HC	GT:AD:AF:DP	0/1:21,73:0.78:94
chr6	4021554	rs11752006	A	G	4207.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr6	4031998	rs9503893	A	G	2499.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr6	4033065	rs6924389	A	G	935.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr6	4037458	rs7744603	A	G	125.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr6	4037582	rs7763233	C	A	760.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr6	4052167	rs3747761	C	A	2303.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr6	4052383	rs3747762	G	A	4996.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr6	4052458	rs3833454	G	GT	1153.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr6	4057233	rs853407	C	T	430.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr6	4057429	rs853408	A	G	2330.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:1,92:0.99:93
chr6	4058782	rs12198921	C	T	200.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr6	4069166	rs595413	C	T	7677.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr6	4936074	rs1539004	T	G	1318.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr6	4937662	rs9502253	A	C	895.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr6	4937728	rs36001374	C	CA	1153.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.556;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.24;ReadPosRankSum=-0.081;SOR=0.883;set=HC	GT:AD:AF:DP	0/1:15,66:0.81:81
chr6	4937742	rs61406305	C	CT	4920.73	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr6	4937747	rs56133250	A	G	5077.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.09;QD=42.31;SOR=1.217;set=HC	GT:AD:AF:DP	1/1:0,120:1.00:120
chr6	4944004	rs200106765	T	TA	56.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.405;ClippingRankSum=-0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.36;ReadPosRankSum=0.141;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:6,7:0.54:13
chr6	4952413	rs2793263	T	C	1387.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr6	4999011	rs12214401	A	G	798.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.21;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr6	5000704	rs12212751	G	A	510.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr6	5000721	rs2764108	T	C	496.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.16;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr6	5000724	rs10631918	C	CT	452.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.16;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr6	5001577	rs912711	G	C	682.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr6	5003952	rs4960056	T	C	2909.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr6	5004020	rs114447515	C	T	8622.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:2,321:0.99:323
chr6	5086070	rs667752	A	G	1680.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr6	5086211	rs584962	G	C	4501.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr6	5086558	rs436556	C	A	5428.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr6	5138809	rs11301112	GT	G	143.75	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr6	5139012	rs463054	C	A	1262.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr6	5148679	.	T	TTCTGAATCGTAATCCTGAGCTGGGCTGGGGGCGCAGAGTCAGAAC	806.73	.	AC=2;AF=1.00;AN=2;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.45;SOR=2.179;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr6	5148728	.	G	GAA	122	.	AC=2;AF=1.00;ALERT;AN=2;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.50;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr6	5148729	.	T	TCGTAATCCTGAGCTGGGCTGAGGGCGCAGAGTCAGAACTCTGA	122	.	AC=2;AF=1.00;ALERT;AN=2;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.50;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr6	5217010	rs41302851	C	T	3344.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr6	5260816	rs4141761	A	G	413.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr6	5431960	rs10900967	A	G	5156.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr6	5545654	rs7749599	C	T	1401.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr6	5999464	rs3749860	C	G	3589.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr6	6003820	rs3838670	GGGA	G	253.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.615;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.68;ReadPosRankSum=0.388;SOR=0.798;set=HC	GT:AD:AF:DP	0/1:29,9:0.24:38
chr6	6167558	rs199591949	ATTTTT	A	1432.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.255;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=0.387;QD=32.56;ReadPosRankSum=0.951;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:2,42:0.95:44
chr6	6167621	rs435048	G	A	3120.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr6	6169656	rs7769202	T	C	3170.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr6	6174786	rs380058	G	C	892.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr6	6305458	rs7745910	G	C	2219.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr6	6305477	rs2295753	C	A	2379.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr6	6318921	rs11414870	G	GA	316.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.064;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=1.698;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.220;QD=2.68;ReadPosRankSum=0.814;SOR=0.968;set=HC	GT:AD:AF:DP	0/1:79,39:0.33:118
chr6	6320808	rs2815822	T	G	4049.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr6	6321128	rs1024231	T	C	5346.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:2,200:0.99:202
chr6	6588881	rs977785	A	C	977.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr6	6589192	rs112924538	G	GGA	1160.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr6	6625420	rs2233125	A	T	1288.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr6	6649974	rs3062400	A	AAGG	817.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr6	7187773	rs3028658	C	CTTTTA	2926.73	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:5,73:0.94:78
chr6	7247248	rs2256596	T	C	3979.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr6	7289957	rs16740	CCA	C	3729.73	.	AC=2;AF=1.00;AN=2;DB;DP=86;MQ=60.13;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr6	7290282	rs9505117	C	T	730.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr6	7295283	rs7764613	T	A	1297.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr6	7295605	rs9502587	A	G	2112.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr6	7295755	rs2714361	G	A	1565.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr6	7298287	rs2714309	G	A	2828.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr6	7303735	rs9505131	C	T	531.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr6	7313406	rs2274210	C	G	5811.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr6	7355470	rs2764074	T	C	221.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr6	7368917	rs1324502	A	G	824.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr6	7373249	rs11243160	T	C	341.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr6	7374207	rs2876098	T	G	9015.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	1/1:4,342:0.99:346
chr6	7385891	rs147220799	ATT	A	1090.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr6	7387236	rs9406026	G	A	2745.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:1,105:0.99:106
chr6	7387433	rs35613760	T	TA	403.25	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:4,23:0.85:27
chr6	7387462	rs9406027	T	C	622.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr6	7390369	rs2296358	T	C	5197.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr6	7395484	rs62386195	C	T	1357.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr6	7397125	.	GGT	G	162.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.167;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.03;ReadPosRankSum=0.232;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:18,9:0.33:27
chr6	7404269	rs140810129	A	T	1830.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:3,72:0.96:75
chr6	7410735	.	G	GT	184.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.139;ClippingRankSum=0.000;DP=156;ExcessHet=3.0103;FS=2.103;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=2.059;QD=1.44;ReadPosRankSum=-0.544;SOR=0.973;set=HC	GT:AD:AF:DP	0/1:98,30:0.23:128
chr6	7411831	rs12530477	T	G	935.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr6	7413094	.	AT	A	99.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.788;ClippingRankSum=0.000;DP=31;ExcessHet=3.0103;FS=1.477;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.32;ReadPosRankSum=1.120;SOR=0.416;set=HC	GT:AD:AF:DP	0/1:19,11:0.37:30
chr6	7414657	rs4960314	T	C	1135.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr6	7417721	.	C	T	6278.77	.	AC=2;AF=1.00;AN=2;DP=243;set=Intersection	GT:AD:AF:DP	1/1:2,235:0.99:237
chr6	7563983	rs2806234	T	G	3998.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr6	7566715	.	G	C	5335.77	.	AC=2;AF=1.00;ALERT;AN=2;DP=125;set=Intersection	GT:AD:AF:DP	1/1:2,123:0.98:125
chr6	7566716	.	TA	T	5326.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=121;set=Intersection	GT:AD:AF:DP	1/1:2,119:0.98:121
chr6	7566720	.	C	G	5236.77	.	AC=2;AF=1.00;AN=2;DP=120;set=Intersection	GT:AD:AF:DP	1/1:2,118:0.98:120
chr6	7595241	.	AT	A	59.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.273;ClippingRankSum=0.000;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.49;ReadPosRankSum=1.084;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:14,10:0.42:24
chr6	7727271	rs111588693	G	A	400.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr6	8015821	rs3734591	T	C	1370.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:1,50:0.98:51
chr6	8016089	rs2057185	C	T	1738.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr6	8026577	rs9328452	T	C	3400.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr6	8041545	rs67474005	C	CTTTT	95.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.64;MQRankSum=0.431;QD=15.96;ReadPosRankSum=0.210;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:1,5:0.83:6
chr6	8054413	rs2743993	T	C	3597.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr6	8090270	rs1136044	T	G	311.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr6	8095629	rs9392961	G	A	232.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr6	8095667	rs113910260	C	T	678.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr6	8095798	rs113179465	GT	G	56.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.545;ClippingRankSum=-0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.54;MQRankSum=0.674;QD=4.05;ReadPosRankSum=-0.433;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:7,7:0.50:14
chr6	8102490	rs9392962	T	C	712.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr6	9616214	.	CAAG	C	103.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.628;ClippingRankSum=0.000;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.79;ReadPosRankSum=1.523;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:51,7:0.12:58
chr6	9705483	rs74387865	G	A	5757.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:1,211:1.00:212
chr6	9750730	rs71546885	G	GTAA	157.73	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr6	9795472	.	A	AAGG	250.75	.	AC=2;AF=1.00;AN=2;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.34;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr6	9795492	.	G	GGAGGAGGAGGAA	268.75	.	AC=2;AF=1.00;AN=2;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.39;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr6	9795507	.	A	AGAG	185.87	.	AC=2;AF=1.00;AN=2;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.17;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr6	9795549	rs70988144	G	GAGA	243.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.366;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.54;MQRankSum=-0.566;QD=34.82;ReadPosRankSum=-0.366;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:1,6:0.86:7
chr6	9795586	.	G	GGAAGAAGAAGAAGAAGAAGAA	986.73	.	AC=2;AF=1.00;AN=2;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.88;QD=61.67;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr6	9809724	rs13204197	T	C	2708.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr6	9860514	rs150538680	C	CA	141.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.867;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=5.929;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.09;ReadPosRankSum=0.599;SOR=2.833;set=HC	GT:AD:AF:DP	0/1:8,12:0.60:20
chr6	9922006	rs1925775	A	G	296.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr6	10587038	rs539351	C	G	7917.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr6	10634396	rs146085145	C	T	6863.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr6	10764727	rs126405	A	G	3090.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr6	10775446	rs478791	T	C	1584.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr6	10785011	rs113945134	C	CCAGA	9861.73	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr6	10785263	rs6936890	C	G	1103.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr6	10791859	rs518954	A	C	1538.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr6	10792197	rs521802	T	C	2371.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr6	10802045	rs569418	C	G	917.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr6	10802101	rs4712966	G	A	2401.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr6	10814091	rs6909367	A	G	5063.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr6	10882100	rs2153156	G	A	2015.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr6	10887251	rs9366663	T	C	3256.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.61;SOR=1.810;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr6	10887251	.	TCG	CCC	2398	.	AC=2;AF=1.00;AN=2;BRF=0.42;FR=1.0000;HP=2;HapScore=1;MGOF=20;MMLQ=24;MQ=60.0;NF=38;NR=13;PP=2398;QD=48.0679975463;SC=CAGGGCTCTTTCGGCAGCGCC;SbPval=0.64;Source=Platypus;TC=54;TCF=39;TCR=15;TR=51;WE=10887261;WS=10887241;set=Platypus	GT:AD:AF:DP	1/1:3,51:0.94:54
chr6	10887253	rs9358956	G	C	3256.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.61;SOR=1.810;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr6	10887276	rs9348724	C	G	2977.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr6	10891781	rs1538441	C	T	1032.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=63.67;QD=24.59;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr6	10891838	rs78570106	ATCTC	A	905.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=65.74;QD=43.13;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr6	10898820	rs12190074	C	T	192.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr6	10906154	rs9357021	A	G	515.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr6	10911282	rs4713044	G	A	1000.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:1,35:0.97:36
chr6	10924992	rs1225764	A	G	702.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr6	10931587	rs1225729	T	C	2014.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr6	10955408	rs1225746	C	T	4354.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:2,163:0.99:165
chr6	10955594	rs1225747	T	C	1441.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr6	10961649	rs9791208	T	C	11521.77	.	AC=2;AF=1.00;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	1/1:2,428:1.00:430
chr6	10964194	rs200660369	A	AT	151.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.763;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.89;ReadPosRankSum=0.332;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:15,16:0.52:31
chr6	10983971	rs4532436	C	G	2237.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr6	10990493	rs2281591	A	G	7533.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:1,275:1.00:276
chr6	11005686	rs2295601	G	A	5065.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr6	11005842	rs2295602	T	C	1643.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr6	11010800	rs9295752	T	G	469.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr6	11011074	rs9380025	T	G	554.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr6	11714639	rs35108078	G	GA,GAA	913.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.942;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.74;MQRankSum=0.341;QD=16.92;ReadPosRankSum=-1.239;SOR=0.756;set=HC	GT:AD:AF:DP	1/2:6,34,14:0.63,0.26:54
chr6	11714806	rs3734273	G	A	4566.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr6	11723538	rs210905	A	G	894.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr6	11779088	rs2076189	C	T	548.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr6	12120445	rs2228215	A	G	10405.77	.	AC=2;AF=1.00;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	1/1:3,367:0.99:370
chr6	12120588	rs2228209	C	T	11647.77	.	AC=2;AF=1.00;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	1/1:1,429:1.00:430
chr6	12122174	rs2228210	A	G	6375.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:1,235:1.00:236
chr6	12122645	rs6900196	A	G	8003.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr6	12124855	rs2228213	G	A	11464.77	.	AC=2;AF=1.00;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	1/1:4,424:0.99:428
chr6	12290728	rs1800997	TA	T	781.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr6	12294258	rs5369	A	G	6551.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr6	13182685	rs3778646	G	T	1236.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr6	13273318	rs202054	A	G	887.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr6	13278648	rs3817735	A	G	193.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr6	13281412	rs3846903	A	G	4559.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr6	13288535	rs202040	C	T	1049.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr6	13288578	rs202039	G	A	1743.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr6	13288648	rs202038	A	G	2610.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr6	13288679	rs67298859	GCT	G	3128.73	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr6	13288737	rs202036	T	A	1681.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr6	13294866	rs6910418	G	A	1215.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr6	13295502	rs4602719	T	C	4248.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr6	13295515	rs1550526	A	C	4762.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr6	13295536	rs454563	C	T	4834.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr6	13295752	rs35194435	AG	A	631.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr6	13316780	rs56980190	CA	C	327.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.710;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=3.706;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.581;QD=2.06;ReadPosRankSum=0.501;SOR=0.397;set=HC	GT:AD:AF:DP	0/1:110,49:0.31:159
chr6	13361088	rs2496162	A	G	2437.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:2,88:0.98:90
chr6	13365913	rs9367440	C	G	2767.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr6	13470113	rs766773	A	T	6874.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr6	13584583	rs2804918	A	G	2468.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr6	13588719	rs34942769	TA	T	3202.73	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr6	13597295	.	C	CA	282.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.589;ClippingRankSum=0.000;DP=261;ExcessHet=3.0103;FS=1.290;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.868;QD=1.18;ReadPosRankSum=0.769;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:192,47:0.20:239
chr6	13620877	rs3757260	A	T	134.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr6	13638243	rs2071836	T	C	797.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr6	13639700	rs6915775	G	A	577.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr6	13659079	rs204232	T	G	6738.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr6	13711279	rs6905991	A	G	5178.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr6	14118034	rs111804875	G	A	3689.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:2,134:0.99:136
chr6	15533951	rs4236167	C	T	6283.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:2,239:0.99:241
chr6	15546294	.	CT	C	39.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.476;ClippingRankSum=0.000;DP=81;ExcessHet=3.0103;FS=2.816;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.92;ReadPosRankSum=1.141;SOR=1.236;set=HC	GT:AD:AF:DP	0/1:29,14:0.33:43
chr6	15586009	rs6926401	G	T	3337.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr6	15593240	rs7758659	T	C	1472.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.30;SOR=1.412;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr6	16740208	.	G	A	757.77	.	AC=2;AF=1.00;AN=2;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr6	17102429	rs9367941	G	A	3518.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:2,132:0.99:134
chr6	17102600	rs2147230	A	G	2369.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.819;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=4.106;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.43;ReadPosRankSum=4.456;SOR=1.077;set=HC	GT:AD:AF:DP	1/1:5,92:0.95:97
chr6	17282415	rs1108512	G	C	2172.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr6	17290459	rs11403725	G	GT	631.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr6	17493690	rs751502	C	G	4013.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr6	17513954	rs4716146	T	C	693.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr6	17543036	rs2296249	A	G	91.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr6	17543302	rs9256	A	G	4317.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr6	17606413	rs1969830	C	T	465.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.11;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr6	17606428	.	ATT	A	56.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.303;ClippingRankSum=-0.000;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.05;ReadPosRankSum=-0.324;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:9,5:0.36:14
chr6	17616493	rs7765156	C	G	1810.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.15;SOR=1.778;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr6	17616556	rs3777712	C	T	736.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr6	17628841	rs11422297	T	TA	269.73	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:6,15:0.71:21
chr6	17629616	rs942467	G	A	4796.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr6	17669312	.	C	CT	87.87	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.593;ClippingRankSum=-0.000;DP=20;ExcessHet=3.0103;FS=6.532;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=9.76;ReadPosRankSum=0.282;SOR=2.788;set=HC	GT:AD:AF:DP	1/1:1,8:0.89:9
chr6	17669733	rs61748575	T	C	9270.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	1/1:0,347:1.00:347
chr6	17675386	rs11418400	G	GA	1098.80	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.308;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=1.002;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=0.837;QD=9.64;ReadPosRankSum=0.832;SOR=0.490;set=HC	GT:AD:AF:DP	0/1:32,82:0.72:114
chr6	17688693	rs16879902	C	T	5766.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:4,218:0.98:222
chr6	17706404	rs13219815	G	A	3237.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:1,114:0.99:115
chr6	17706493	rs13219933	G	A	7839.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:2,294:0.99:296
chr6	17777614	rs11396690	C	CT	1181.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.108;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=6.113;MLEAC=1;MLEAF=0.500;MQ=60.52;MQRankSum=1.145;QD=11.36;ReadPosRankSum=-0.901;SOR=1.378;set=HC	GT:AD:AF:DP	0/1:29,75:0.72:104
chr6	17777654	rs1886247	G	A	2016.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr6	17779467	.	C	CATAT	157.87	.	AC=2;AF=1.00;AN=2;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.98;QD=31.57;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr6	17785948	rs4716186	A	G	1721.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr6	17785981	rs10686772	C	CAA	495.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.214;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.53;ReadPosRankSum=-0.652;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:1,21:0.95:22
chr6	17787886	rs148516660	C	CAACAAA	2332.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr6	17790191	rs2147211	A	G	2951.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr6	17799575	rs3734235	A	G	1946.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr6	17799766	rs6459573	T	C	704.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.46;SOR=3.383;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr6	17799766	.	TG	CA	303	.	AC=2;AF=1.00;AN=2;BRF=0.39;FR=1.0000;HP=2;HapScore=2;MGOF=4;MMLQ=28;MQ=60.0;NF=2;NR=12;PP=303;QD=25.4619910616;SC=TGAAACAAATTGGTCATCCAT;SbPval=0.56;Source=Platypus;TC=15;TCF=2;TCR=13;TR=14;WE=17799775;WS=17799756;set=Platypus	GT:AD:AF:DP	1/1:1,14:0.93:15
chr6	17799767	rs78066694	G	A	704.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.46;SOR=3.383;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr6	17809199	rs6913612	G	A	2049.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr6	17817235	rs9383327	C	G	545.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr6	17821965	rs12205910	A	G	4163.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr6	17825888	rs7771879	T	C	532.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr6	17831419	rs2277080	G	A	11500.77	.	AC=2;AF=1.00;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	1/1:2,434:1.00:436
chr6	17834198	rs4716189	T	G	5794.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:2,132:0.99:134
chr6	17834213	rs4716190	T	C	6480.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:2,160:0.99:162
chr6	17834316	rs4716191	T	C	4211.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:2,157:0.99:159
chr6	17834328	rs4716192	G	A	3905.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:1,147:0.99:148
chr6	17834346	rs4716193	A	G	3420.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr6	17855864	rs624105	G	C	2852.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr6	17882140	rs7757737	A	T	543.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr6	17951668	rs112683346	T	TA	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.627;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=9.244;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.05;ReadPosRankSum=0.020;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:27,10:0.27:37
chr6	18122506	rs10949483	G	A	5669.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr6	18134008	rs113956700	G	GA	1455.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.62;QD=41.59;SOR=0.906;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr6	18134021	rs2842949	C	A	1710.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.46;QD=37.19;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr6	18139214	rs2842934	G	A	2049.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr6	18139398	rs188681338	T	C	546.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr6	18139964	rs375276814	GA	G	535.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr6	18161563	rs4716224	G	A	4713.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:2,171:0.99:173
chr6	18166678	rs116824463	T	C	2962.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:4,119:0.97:123
chr6	18166802	rs912528	T	G	926.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr6	18171477	rs1011620	G	A	2533.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr6	18215303	rs214585	T	C	3996.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr6	18258085	rs7743778	A	G	927.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr6	18368880	rs11757266	G	A	1049.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr6	18387692	rs9396858	A	G	285.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr6	18399750	rs2296198	T	C	5073.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:2,187:0.99:189
chr6	18406387	rs6925570	G	A	2200.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr6	18439739	rs2277081	T	A	1004.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr6	19838516	rs113135736	C	T	1439.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr6	20124860	rs949550	G	A	1399.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr6	20126610	rs34292360	T	C	1624.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr6	20126656	rs2483766	C	T	2959.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr6	20131499	rs34263705	C	G	977.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr6	20144637	rs1202195	G	A	576.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr6	20212200	.	A	AACAC	736.73	.	AC=1;AF=0.500;AN=2;DP=25;set=Intersection	GT:AD:AF:DP	0/1:2,20:0.91:22
chr6	20548763	rs370920469	CA	C	119.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.450;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.52;ReadPosRankSum=-0.893;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:19,15:0.44:34
chr6	20740007	rs9465875	G	C	493.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr6	20758760	rs10946406	A	G	1005.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr6	20758943	rs2820001	G	T	1236.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr6	21065450	rs56087852	A	G	6062.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr6	21595428	.	AGGC	A	136.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.145;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.45;MQRankSum=1.678;QD=8.04;ReadPosRankSum=2.061;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:12,5:0.29:17
chr6	22136879	rs6921113	G	T	8131.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chr6	22136938	rs6900792	T	C	5077.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr6	24146672	rs3829810	G	A	725.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr6	24205236	rs9467075	G	A	6205.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr6	24288920	rs12215082	T	C	795.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr6	24302087	rs807703	G	A	7854.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr6	24411116	rs114711024	G	T	1102.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr6	24418577	rs150886520	TA	T	160.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.560;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=3.222;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.72;ReadPosRankSum=0.591;SOR=2.147;set=HC	GT:AD:AF:DP	0/1:4,11:0.73:15
chr6	24418581	rs2753925	A	T	243.75	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.772;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.54;ReadPosRankSum=-0.724;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:4,14:0.78:18
chr6	24437445	rs1772256	G	A	5500.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr6	24445718	rs793714	A	G	312.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr6	24448320	rs115820709	C	T	4365.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr6	24460679	rs2793434	T	C	756.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr6	24460707	rs2744576	A	T	569.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr6	24463055	rs2793442	A	G	4413.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr6	24467633	rs2793445	C	T	2084.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr6	24476553	rs760904	G	A	2507.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr6	24480113	rs61748579	T	C	2835.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:1,102:0.99:103
chr6	24486177	rs60816578	A	G	610.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr6	24489691	rs2235501	G	C	4473.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr6	24489733	rs116789689	C	G	4564.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.88;SOR=1.253;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr6	24489741	rs2076316	A	C	4199.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.15;SOR=1.191;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr6	24503590	rs2760118	C	T	5818.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:1,222:1.00:223
chr6	24505030	rs2744583	A	G	3539.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:2,139:0.99:141
chr6	24505216	rs114082057	G	A	5178.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr6	24505354	rs2744584	G	A	1159.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr6	24511960	.	C	CT	158.86	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.430;ClippingRankSum=0.000;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=12.22;ReadPosRankSum=-0.296;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:2,11:0.85:13
chr6	24515368	rs4646843	G	C	1600.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr6	24520861	.	A	AGT	316.73	.	AC=1;AF=0.500;AN=2;DP=17;set=Intersection	GT:AD:AF:DP	0/1:2,11:0.85:13
chr6	24532412	rs12211574	G	A	6923.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:2,272:0.99:274
chr6	24556675	rs807538	A	G	901.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr6	24651320	rs3181245	C	G	1334.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr6	24653376	rs1129644	G	A	5384.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr6	24657964	rs3212231	T	G	498.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr6	24667205	rs17243164	T	TCC	6700.73	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr6	24667586	rs17243143	A	G	3230.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr6	24667662	rs3181228	C	T	1439.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr6	24687765	rs926529	A	G	2695.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:1,105:0.99:106
chr6	24698215	rs7765904	G	A	4910.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:1,185:0.99:186
chr6	24714433	rs11753290	G	A	690.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr6	24714681	.	T	TA	1358.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.154;ClippingRankSum=0.000;DP=128;ExcessHet=3.0103;FS=2.215;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.000;QD=13.32;ReadPosRankSum=1.373;SOR=1.038;set=HC	GT:AD:AF:DP	0/1:19,83:0.81:102
chr6	24781025	rs2245409	A	G	3423.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr6	24797647	rs2251702	A	G	4445.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:1,156:0.99:157
chr6	24806594	rs9358799	C	T	5623.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:2,209:0.99:211
chr6	24806739	rs5875006	C	CTT	4579.73	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr6	24806752	rs4074420	A	C	2463.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr6	24806777	rs9379689	T	A	1590.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr6	24809771	rs9379692	A	G	1305.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr6	24809853	rs9393587	C	T	5124.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr6	24809881	rs9358801	T	A	6831.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr6	24825511	rs9358804	A	G	1667.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr6	24828318	rs35374726	C	T	1067.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:1,37:0.97:38
chr6	24828560	rs45437991	A	G	2867.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:1,79:0.99:80
chr6	24828566	rs72205632	CCATT	C	2634.73	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:1,67:0.99:68
chr6	24836161	rs6901565	C	A	436.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr6	25042286	rs35331447	TA	T	394.75	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:4,29:0.88:33
chr6	25081956	rs181899737	A	C	2629.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr6	25082105	rs303010	T	C	1855.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr6	25084691	rs303007	C	T	2834.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr6	25084718	rs303006	A	G	3580.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr6	25092308	rs80136173	A	T	744.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr6	25097450	rs392852	T	C	2836.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr6	25110097	rs302990	T	C	1319.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr6	25110231	rs188072431	C	T	7230.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr6	25115176	rs57247838	CGTTTTT	C	2503.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr6	25115397	rs302982	G	A	1145.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr6	25279208	rs6908902	A	T	84.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr6	25279839	rs377675604	CT	C	450.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:2,30:0.94:32
chr6	25280119	rs6914799	C	A	2003.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.72;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr6	25420344	rs913455	C	G	4869.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr6	25426640	rs5875038	AT	A	595.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.366;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=1.737;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.38;ReadPosRankSum=0.661;SOR=0.908;set=HC	GT:AD:AF:DP	0/1:67,69:0.51:136
chr6	25435758	rs9467515	A	G	6701.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr6	25450026	rs9295661	C	A	283.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr6	25450952	rs146339541	CTTCCTTCT	C	979.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr6	25471559	rs144894905	G	GT	178.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.047;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=3.998;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=1.059;QD=4.26;ReadPosRankSum=-0.689;SOR=0.153;set=HC	GT:AD:AF:DP	0/1:25,17:0.40:42
chr6	25492296	rs1034051	C	T	3408.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr6	25492364	rs1034050	A	G	971.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr6	25509976	rs4568443	T	C	3860.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr6	25510051	rs3915740	A	G	1510.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.16;SOR=3.321;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr6	25510058	rs4559085	G	C	1450.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.96;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr6	25510648	rs7453991	TA	CG	826.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr6	25511008	rs34965228	C	CAT	1349.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr6	25516126	rs301379	C	T	1129.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr6	25516158	rs301378	G	A	635.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr6	25528913	rs485567	T	C	554.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr6	25554180	rs214049	C	G	3629.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr6	25557139	rs201541430	T	TTG	985.76	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.298;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.86;MQRankSum=0.562;QD=14.50;ReadPosRankSum=1.446;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:8,60:0.88:68
chr6	25600968	rs10456324	G	A	1468.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr6	25605091	rs1012899	G	A	4335.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr6	25606181	rs2294345	G	A	1129.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr6	25610203	rs11962024	A	T	4419.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:2,161:0.99:163
chr6	25652568	rs3215471	AG	A	3051.73	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr6	25653566	rs34327841	T	TA	747.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr6	25653842	rs1406927	T	G	919.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr6	25661887	rs2072847	A	T	4263.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:2,153:0.99:155
chr6	25665041	rs12213891	C	T	871.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr6	25669636	rs2064127	A	T	1296.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr6	25669833	rs2272825	T	C	3838.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr6	25689378	rs11327870	AT	A	1545.06	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.459;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.71;ReadPosRankSum=0.772;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:21,111:0.84:132
chr6	25689487	rs2294346	G	C	2271.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr6	25691362	rs17492659	C	T	4652.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:1,179:0.99:180
chr6	25701691	rs6928384	C	G	1937.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr6	25726343	rs6940348	C	T	4130.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr6	25727527	rs17320558	T	A	2446.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr6	25769349	rs1892251	T	C	4278.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:2,161:0.99:163
chr6	25769510	rs2328892	A	G	1751.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:1,63:0.98:64
chr6	25778055	rs12201071	C	T	2847.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:3,104:0.97:107
chr6	25778260	rs142909296	C	CTGATGAATATTCA	3377.73	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr6	25798932	rs1165215	G	A	3596.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr6	25801057	rs1165210	T	C	786.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr6	25813150	rs1165196	G	A	5987.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr6	25819532	rs45493498	C	T	1397.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr6	25849620	rs942379	A	G	4205.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr6	25849779	rs1165189	A	C	2427.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:1,88:0.99:89
chr6	25850845	rs56027330	C	T	6406.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:1,228:1.00:229
chr6	25862466	rs1165165	C	T	3477.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr6	25914801	rs2071299	G	A	5325.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr6	25914901	rs2071298	G	A	2656.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr6	25916979	rs1865760	C	T	4601.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr6	25918688	rs3752421	G	A	2235.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr6	25924134	rs111909699	C	T	1895.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:2,71:0.97:73
chr6	25924158	rs1540273	T	C	1264.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:2,46:0.96:48
chr6	25925823	rs7770139	A	G	1514.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr6	26021813	rs9467664	A	T	1861.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr6	26027135	rs3752420	G	A	5241.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr6	26027433	rs3752419	G	A	13965.77	.	AC=2;AF=1.00;AN=2;DB;DP=522;set=Intersection	GT:AD:AF:DP	1/1:1,516:1.00:517
chr6	26031868	rs2213284	G	A	4576.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr6	26033506	rs2230655	G	A	6349.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr6	26033809	rs3842706	T	TAAG	7453.73	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:2,273:0.99:275
chr6	26033828	rs3830054	G	A	5518.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr6	26044369	rs2032447	A	G	3977.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr6	26045737	rs3752418	C	G	10265.77	.	AC=2;AF=1.00;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	1/1:2,394:0.99:396
chr6	26045929	rs3752416	T	C	8495.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr6	26056549	rs10425	A	G	5866.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr6	26087856	rs2858993	T	A	2590.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:4,99:0.96:103
chr6	26091336	rs2071303	T	C	3510.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr6	26094367	rs1572982	G	A	719.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr6	26096748	rs1045537	G	C	2914.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr6	26104071	rs10636318	G	GAAAAAA	232.80	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.80;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr6	26199524	rs438534	A	G	1867.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr6	26285683	rs2393593	T	C	14167.77	.	AC=2;AF=1.00;AN=2;DB;DP=531;set=Intersection	GT:AD:AF:DP	1/1:2,524:1.00:526
chr6	26285867	rs3999544	C	T	977.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr6	26368938	rs76764747	C	T	1788.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:25,68:0.73:93
chr6	26370422	.	A	T	967.77	.	AC=2;AF=1.00;AN=2;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr6	26370482	rs60049578	T	C	3111.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:2,113:0.98:115
chr6	26370605	rs9379860	T	C	7046.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr6	26370833	rs58367598	T	G	7561.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:2,273:0.99:275
chr6	26374658	rs2073526	G	A	2461.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr6	26374813	rs72841532	C	G	525.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr6	26385113	rs4490658	A	G	3607.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr6	26385170	rs61364019	G	GT	6721.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.845;ClippingRankSum=0.000;DB;DP=269;ExcessHet=3.0103;FS=3.796;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.27;ReadPosRankSum=-1.244;SOR=0.800;set=HC	GT:AD:AF:DP	1/1:1,265:1.00:266
chr6	26388405	rs62617839	G	A	8872.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:0,335:1.00:335
chr6	26390830	rs2076029	T	C	1524.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr6	26393021	rs1614887	G	A	3888.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr6	26405835	rs56161420	G	A	5742.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr6	26406053	rs3857549	C	T	8038.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:2,290:0.99:292
chr6	26406255	rs3857550	G	A	2506.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr6	26410227	rs7770214	G	A	8425.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:1,317:1.00:318
chr6	26411188	rs10946820	T	C	266.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr6	26411402	rs79628800	G	A	1056.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr6	26411483	rs10946821	C	T	443.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr6	26411895	rs12214924	T	C	8023.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:1,296:1.00:297
chr6	26411963	rs12214976	T	A	4954.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr6	26411987	rs28571747	T	C	3437.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr6	26413088	rs6900725	T	C	3202.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr6	26413164	rs34577398	CAG	C	1672.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr6	26413368	rs6901245	T	G	1073.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr6	26413975	rs56190518	C	T	2674.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr6	26422206	rs55786210	A	G	1950.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr6	26422260	rs1796522	G	A	3537.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr6	26422307	rs56182232	G	T	3744.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:11,150:0.93:161
chr6	26422354	rs55775018	C	T	3011.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:16,120:0.88:136
chr6	26422387	.	C	CCTTCCTCCTCCTCCT	2379.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.265;ClippingRankSum=0.000;DP=86;ExcessHet=3.0103;FS=1.252;MLEAC=1;MLEAF=0.500;MQ=46.31;MQRankSum=-4.580;QD=29.38;ReadPosRankSum=0.337;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:14,67:0.83:81
chr6	26422519	rs111293349	T	C	1427.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr6	26422527	rs141119405	TC	T	1418.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr6	26423090	rs12191917	C	T	8726.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr6	26423154	rs12198993	T	C	15879.77	.	AC=2;AF=1.00;AN=2;DB;DP=608;set=Intersection	GT:AD:AF:DP	1/1:2,605:1.00:607
chr6	26423317	rs7745238	G	A	7255.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr6	26423560	rs4320356	C	T	2515.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:2,89:0.98:91
chr6	26426316	rs10946828	T	A	882.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr6	26426487	rs10946829	G	A	8553.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,319:1.00:319
chr6	26428062	rs17611141	T	G	2353.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr6	26428314	rs12201546	G	A	2953.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr6	26428842	rs1741740	A	G	3102.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr6	26430981	rs2893848	A	G	2841.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:1,97:0.99:98
chr6	26431340	rs45499696	A	G	5223.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:3,193:0.98:196
chr6	26443853	rs56036950	C	A	8605.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:0,326:1.00:326
chr6	26444168	rs143665311	C	T	9221.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:2,344:0.99:346
chr6	26445860	rs3846847	C	T	2254.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:2,81:0.98:83
chr6	26446209	rs3846848	C	T	9066.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;MQ=60.03;set=Intersection	GT:AD:AF:DP	1/1:2,343:0.99:345
chr6	26448824	rs76558307	C	A	4513.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.175;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=27.03;ReadPosRankSum=2.560;SOR=1.278;set=HC	GT:AD:AF:DP	1/1:2,165:0.99:167
chr6	26463621	rs142951857	A	G	7888.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:2,302:0.99:304
chr6	26466234	rs4712999	A	G	2850.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr6	26505135	rs3736780	C	T	873.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr6	27114639	rs113087070	G	A	2533.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr6	27216848	rs1234145	T	C	586.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr6	27222974	rs2273565	C	T	7193.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:1,260:1.00:261
chr6	27277402	rs6456773	C	T	2918.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr6	27292753	rs141811713	A	G	4417.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:2,168:0.99:170
chr6	27292928	rs16897710	T	G	7471.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:1,266:1.00:267
chr6	27356527	rs13220817	T	C	720.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr6	27356867	rs4713091	A	G	9336.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	1/1:0,336:1.00:336
chr6	27356902	rs10807020	A	G	9771.77	.	AC=2;AF=1.00;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	1/1:2,355:0.99:357
chr6	27356925	rs10807021	T	G	8448.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chr6	27357308	rs6904883	T	C	1134.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr6	27424443	rs764461	T	A	344.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr6	27424960	rs10484398	G	C	690.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr6	27425185	rs1883216	C	A	4559.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr6	27435707	rs2272814	G	A	2567.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr6	27440004	rs7750795	A	C	10760.77	.	AC=2;AF=1.00;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	1/1:2,404:1.00:406
chr6	27782007	rs144406971	C	G	1392.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr6	27792221	rs200499	C	T	8408.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.925;ClippingRankSum=0.000;DB;DP=199;ExcessHet=3.0103;FS=2.508;MLEAC=2;MLEAF=1.000;MQ=58.18;MQRankSum=-0.666;QD=42.47;ReadPosRankSum=1.797;SOR=1.092;set=HC	GT:AD:AF:DP	1/1:3,195:0.98:198
chr6	27792228	rs200498	T	C	8702.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.876;ClippingRankSum=0.000;DB;DP=198;ExcessHet=3.0103;FS=4.371;MLEAC=2;MLEAF=1.000;MQ=58.77;MQRankSum=-0.309;QD=44.18;ReadPosRankSum=-1.102;SOR=1.198;set=HC	GT:AD:AF:DP	1/1:1,196:0.99:197
chr6	27805902	rs141833276	G	C	3796.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr6	27861541	rs141163980	C	T	7824.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr6	27925367	rs7767176	G	A	6107.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:2,222:0.99:224
chr6	28117443	rs2622322	C	G	1186.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr6	28198281	rs1233713	A	G	6083.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr6	28212748	rs13408	G	A	3245.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:1,114:0.99:115
chr6	28215641	rs2235359	T	G	5178.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:1,184:0.99:185
chr6	28219826	rs1736895	G	A	1797.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr6	28227436	rs12000	A	G	5344.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr6	28228342	rs1679709	A	G	5336.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr6	28239575	rs7769545	C	T	427.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr6	28239681	rs2394049	A	G	1606.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr6	28239932	rs61622742	T	TG	5718.73	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr6	28254988	rs16901846	T	C	2369.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr6	28255040	rs1150721	G	C	1431.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr6	28264692	rs3800325	C	G	3181.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr6	28268497	rs2281043	C	T	2479.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr6	28269663	rs1997660	A	G	7204.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr6	28270047	rs6456811	C	G	8561.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:1,314:1.00:315
chr6	28294550	rs853684	T	C	6104.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr6	28321544	rs1474589	G	T	1049.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:2,42:0.95:44
chr6	28331127	rs13201752	AA	GC	9186.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;JOINED;set=Intersection	GT:AD:AF:DP	1/1:1,207:1.00:208
chr6	28331252	rs213228	A	C	3300.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:1,119:0.99:120
chr6	28334079	rs55924797	CAG	C	10805.73	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr6	28336394	rs10549833	CTT	C	2509.73	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:1,58:0.98:59
chr6	28358320	rs1361385	A	G	16890.77	.	AC=2;AF=1.00;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	1/1:1,391:1.00:392
chr6	28358335	rs1416918	G	C	16896.77	.	AC=2;AF=1.00;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	1/1:2,391:0.99:393
chr6	28359170	rs2859348	A	G	7363.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr6	28366262	rs2232422	G	A	921.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr6	28403225	rs2071965	C	T	3548.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr6	28403603	rs11752919	T	C	15369.77	.	AC=2;AF=1.00;AN=2;DB;DP=590;set=Intersection	GT:AD:AF:DP	1/1:4,583:0.99:587
chr6	30859268	rs377743775	C	T	178.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=30.56;QD=19.86;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr6	30859335	.	A	T	194.78	.	AC=2;AF=1.00;AN=2;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=30.56;QD=21.64;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr6	31106459	rs1265097	C	A	1362.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.51;QD=23.50;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr6	31106500	rs138474986	T	TC	1432.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.19;QD=29.24;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr6	32551955	.	G	GCT	4905.73	.	AC=2;AF=1.00;AN=2;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.65;QD=44.20;SOR=0.951;set=HC	GT:AD:AF:DP	1/1:0,111:1.00:111
chr6	32551958	rs1064592	C	T	4914.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.63;QD=45.51;SOR=0.936;set=HC	GT:AD:AF:DP	1/1:0,108:1.00:108
chr6	32551960	.	TGC	T	4822.73	.	AC=2;AF=1.00;AN=2;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.66;QD=45.07;SOR=0.916;set=HC	GT:AD:AF:DP	1/1:0,107:1.00:107
chr6	32551995	rs17853229	A	G	4004.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.507;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=3.203;MLEAC=2;MLEAF=1.000;MQ=45.20;MQRankSum=-1.723;QD=43.53;ReadPosRankSum=1.356;SOR=0.399;set=HC	GT:AD:AF:DP	1/1:1,91:0.99:92
chr6	32551998	rs17853228	G	A	4004.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.435;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=3.203;MLEAC=2;MLEAF=1.000;MQ=45.20;MQRankSum=-1.723;QD=43.53;ReadPosRankSum=1.168;SOR=0.399;set=HC	GT:AD:AF:DP	1/1:1,91:0.99:92
chr6	32552059	rs17883134	GA	TT	488.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.564;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=6.690;JOINED;MLEAC=1;MLEAF=0.500;MQ=43.67;MQRankSum=-1.528;QD=34.91;ReadPosRankSum=-1.492;SOR=2.788;set=HC	GT:AD:AF:DP	0/1:1,13:0.93:14
chr6	32606658	rs28375776	C	G	826.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=52.65;QD=43.51;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr6	32606665	rs9272533	C	T	961.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.85;QD=45.80;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr6	32606676	rs138140806	T	C	916.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.90;QD=43.66;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr6	32606695	rs28435909	T	C	1186.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.05;QD=51.60;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr6	32606701	rs28636516	A	G	1141.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.89;QD=45.67;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr6	32606721	rs75983419	G	T	1402.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr6	32606742	rs74379225	A	G	1397.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr6	32606794	rs28383359	T	C	760.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr6	32606878	rs9272544	G	A	523.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.49;QD=40.29;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr6	32606885	.	G	A	523.77	.	AC=2;AF=1.00;AN=2;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.02;QD=47.62;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr6	32609094	.	C	T	3009.77	.	AC=2;AF=1.00;AN=2;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr6	32609147	rs12722051	A	T	6391.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr6	32609195	rs36219699	G	A	8194.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr6	32609371	rs4467816	T	C	11876.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.840;ClippingRankSum=0.000;DB;DP=285;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=42.42;ReadPosRankSum=-0.874;SOR=1.059;set=HC	GT:AD:AF:DP	1/1:2,278:0.99:280
chr6	32609379	rs9272718	C	T	11553.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.885;ClippingRankSum=0.000;DB;DP=268;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=43.93;ReadPosRankSum=-1.233;SOR=1.228;set=HC	GT:AD:AF:DP	1/1:2,261:0.99:263
chr6	32609607	rs28383461	G	A	1649.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr6	32609813	rs707951	T	C	4025.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr6	32609873	rs707950	GT	CG	2256.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=39.71;QD=44.25;SOR=1.436;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr6	32610075	rs35975014	A	G	4420.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr6	32610151	rs62404092	T	A	2401.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.19;SOR=1.550;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr6	32610461	rs9260	A	G	3240.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:1,122:0.99:123
chr6	32610535	rs1130116	A	C	6954.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr6	32610643	rs36027005	G	T	6211.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:1,231:1.00:232
chr6	32610688	rs35444025	G	C	9196.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.496;ClippingRankSum=0.000;DB;DP=211;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.88;MQRankSum=-0.049;QD=43.79;ReadPosRankSum=-1.708;SOR=0.297;set=HC	GT:AD:AF:DP	1/1:1,209:1.00:210
chr6	32610696	rs62404094	G	A	9103.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.924;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.87;MQRankSum=-0.050;QD=44.19;ReadPosRankSum=-1.489;SOR=0.319;set=HC	GT:AD:AF:DP	1/1:1,205:1.00:206
chr6	32610749	rs7708	G	A	4854.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:1,167:0.99:168
chr6	32610825	rs7142	A	G	7286.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr6	32610976	rs9492	A	C	6503.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr6	32611094	rs36216730	A	T	1065.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr6	32627958	rs7656	T	C	2122.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr6	32632770	rs1049069	A	G	13292.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.085;ClippingRankSum=0.000;DB;DP=313;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.47;MQRankSum=-0.546;QD=43.16;ReadPosRankSum=-0.881;SOR=1.488;set=HC	GT:AD:AF:DP	1/1:2,306:0.99:308
chr6	32632777	rs1049068	C	T	12991.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.159;ClippingRankSum=0.000;DB;DP=298;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.39;MQRankSum=-0.562;QD=44.34;ReadPosRankSum=-1.151;SOR=1.577;set=HC	GT:AD:AF:DP	1/1:2,291:0.99:293
chr6	32632832	rs9274407	A	T	3206.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:2,110:0.98:112
chr6	33553580	rs394199	C	T	985.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr6	33608379	rs4713647	T	C	3246.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr6	33627367	rs41271249	A	G	2128.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:1,77:0.99:78
chr6	33641956	rs7769838	T	C	7653.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr6	33644768	rs2068236	T	C	4300.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.89;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,98:1.00:98
chr6	33644773	rs4713652	T	A	4304.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.38;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr6	33646328	rs2274195	T	C	3841.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr6	33647594	rs4713653	C	A	2951.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr6	33647651	rs4713654	A	G	5853.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr6	33648228	rs2229638	C	T	5714.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr6	33653111	rs942637	T	C	3117.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr6	33653448	rs749338	C	T	3561.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr6	33654378	rs4640882	A	G	2841.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr6	33654897	rs942642	T	C	4729.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr6	33655173	rs2281916	T	C	956.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr6	33656250	rs2296736	T	C	1170.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr6	33656654	rs11759396	C	G	2204.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr6	33656969	rs2296739	G	A	3387.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr6	33657246	rs3818521	C	T	4799.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr6	33658066	rs764752	G	C	1483.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr6	33659472	rs2229642	C	G	3978.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr6	33659536	rs2296740	A	G	4418.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:2,161:0.99:163
chr6	33659557	rs2296741	C	T	5709.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr6	33659793	rs2296742	G	A	1643.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:1,57:0.98:58
chr6	33660411	rs653536	T	C	1167.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr6	33660695	rs3818524	G	C	3254.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr6	33661222	rs3818530	C	G	629.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr6	33668370	rs942643	A	G	1017.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:1,33:0.97:34
chr6	33679596	rs2274458	A	C	1464.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr6	33690796	rs4713668	CA	TG	6747.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr6	33740382	rs2296744	G	A	5834.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr6	33740592	rs4711349	C	T	1819.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr6	33744711	rs2296746	C	T	511.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr6	33744882	rs2296747	C	G	4021.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr6	33745071	rs2296748	C	T	2558.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr6	33748831	rs2182658	T	G	4031.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr6	33752013	rs943479	A	G	1005.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr6	33754396	rs9394167	A	G	649.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr6	33754592	rs4711351	G	A	4920.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr6	33756026	rs6457741	C	T	1717.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:1,54:0.98:55
chr6	33768897	rs2281820	A	G	8272.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:2,308:0.99:310
chr6	34003314	rs34906910	A	T	2924.73	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr6	34003336	rs2451381	T	A	1093.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr6	34003685	rs2228623	T	C	12297.77	.	AC=2;AF=1.00;AN=2;DB;DP=472;set=Intersection	GT:AD:AF:DP	1/1:4,467:0.99:471
chr6	34008006	rs2229900	A	G	4487.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr6	34026938	rs2451359	C	T	8587.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:1,321:1.00:322
chr6	34078463	rs744102	G	A	15178.77	.	AC=2;AF=1.00;AN=2;DB;DP=590;set=Intersection	GT:AD:AF:DP	1/1:0,583:1.00:583
chr6	34211341	rs35381162	GT	G	4866.73	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr6	34212743	rs2780219	A	G	1199.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr6	34213296	rs1150783	T	C	4487.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr6	34214322	rs1150781	C	G	7647.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr6	34214994	rs3997805	G	GTC	1590.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr6	34664207	rs3800456	T	G	1902.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr6	34949451	rs3817473	C	T	5170.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr6	34949607	rs2293242	C	T	13069.77	.	AC=2;AF=1.00;AN=2;DB;DP=494;set=Intersection	GT:AD:AF:DP	1/1:0,486:1.00:486
chr6	34962019	rs11755713	G	C	1555.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr6	34962060	rs3823438	G	A	2217.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:1,80:0.99:81
chr6	34977663	rs9380481	C	A	1218.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.25;QD=29.73;SOR=6.043;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr6	34977813	rs12661991	A	G	3469.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr6	35027927	rs820085	T	C	1921.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr6	35046154	rs820100	T	C	821.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr6	35047579	rs2762338	G	C	2075.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:3,74:0.96:77
chr6	35047732	rs2689094	T	C	1436.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr6	35050506	rs2177382	G	A	8002.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr6	35053383	rs66645129	CTAGGAAGAG	C	2201.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr6	35054983	rs71650764	GGCAGCGTAGACGCT	G	4197.73	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr6	35056443	rs2005	A	G	9271.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:2,340:0.99:342
chr6	35058117	rs707968	A	G	878.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr6	35088956	rs2494096	A	G	1074.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr6	35104018	rs12661389	C	A	3914.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr6	35107682	rs3777748	T	A	1389.73	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr6	35109032	rs142118879	CGCGGCCTG	C	1282.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr6	35203203	rs13214290	T	G	2470.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr6	35205541	rs1929849	T	C	1083.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr6	35205881	rs734538	G	A	2838.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr6	35216296	rs2071920	C	T	1743.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:1,63:0.98:64
chr6	35258539	rs763157	C	A	2522.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr6	35259261	rs1894650	C	G	4873.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr6	35259646	rs9366883	G	C	6093.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr6	35260503	rs1557567	C	T	9371.77	.	AC=2;AF=1.00;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	1/1:0,349:1.00:349
chr6	35260530	rs1557568	C	T	8473.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr6	35285720	rs2395617	A	C	7079.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr6	35378778	rs2016520	C	T	2506.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr6	35391787	rs2076167	C	T	5875.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:1,216:1.00:217
chr6	35477025	rs2064318	C	G	5233.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr6	35477152	rs7752728	C	T	10334.77	.	AC=2;AF=1.00;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	1/1:2,395:0.99:397
chr6	35477303	rs9296155	T	C	2143.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr6	35478612	rs2273001	G	A	5460.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr6	35479574	rs7764472	G	C	1357.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr6	35479876	rs2273003	C	G	132.90	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr6	35480262	rs1540910	T	C	623.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr6	35610681	rs2143404	T	C	1482.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr6	35705892	rs2817041	T	C	2622.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr6	35706062	rs371929037	GT	G	93.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.998;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.81;ReadPosRankSum=-0.076;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:5,7:0.58:12
chr6	35706063	rs9296162	T	G	51.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.549;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.31;ReadPosRankSum=0.076;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:7,5:0.42:12
chr6	35745655	rs2478467	C	T	1393.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr6	35747108	rs6910332	G	A	2567.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr6	35748931	rs34109614	T	C	2598.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.79;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr6	35755658	rs12211728	A	G	3548.77	.	AC=1;AF=0.500;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	0/1:204,169:0.45:373
chr6	35765151	rs3748049	T	C	470.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:14,19:0.58:33
chr6	35840584	rs34797772	TA	T	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.408;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=3.056;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.90;ReadPosRankSum=-0.982;SOR=1.949;set=HC	GT:AD:AF:DP	0/1:14,8:0.36:22
chr6	35923246	rs2295852	T	C	4298.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr6	35943339	.	G	GT	338.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.378;ClippingRankSum=0.000;DP=252;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=3.752;QD=1.57;ReadPosRankSum=-0.933;SOR=0.649;set=HC	GT:AD:AF:DP	0/1:170,46:0.21:216
chr6	35950075	rs9470186	G	C	3126.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr6	36041431	rs851010	A	G	1071.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr6	36064036	rs851007	G	A	812.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr6	36075219	rs9470219	A	C	3383.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr6	36098333	rs12191295	T	C	4478.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr6	36098410	rs1059227	A	C	6760.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.651;ClippingRankSum=0.000;DB;DP=279;ExcessHet=3.0103;FS=2.060;MLEAC=2;MLEAF=1.000;MQ=60.12;MQRankSum=0.231;QD=24.95;ReadPosRankSum=-0.559;SOR=0.226;set=HC	GT:AD:AF:DP	1/1:4,267:0.99:271
chr6	36098497	rs146539855	T	TGGGGGGC	833.73	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr6	36103921	rs2252430	G	A	1606.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr6	36181481	rs72320718	G	GA	45.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.727;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.86;ReadPosRankSum=0.000;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:10,6:0.38:16
chr6	36189887	rs2301422	C	G	1195.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr6	36190156	rs2157317	C	G	293.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr6	36260858	rs2239795	C	T	3860.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.44;SOR=0.934;set=HC	GT:AD:AF:DP	1/1:0,146:1.00:146
chr6	36261885	rs4713949	A	G	2153.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr6	36269603	rs10947600	G	A	3019.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr6	36270130	rs12199580	C	A	11572.77	.	AC=2;AF=1.00;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	1/1:7,435:0.98:442
chr6	36294864	rs41270098	A	G	11376.77	.	AC=2;AF=1.00;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	1/1:2,422:1.00:424
chr6	36322471	.	T	TA	60.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.502;ClippingRankSum=0.000;DP=153;ExcessHet=3.0103;FS=2.090;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.48;ReadPosRankSum=-1.446;SOR=0.402;set=HC	GT:AD:AF:DP	0/1:106,20:0.16:126
chr6	36341294	rs3213530	C	T	2319.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr6	36353169	rs6901513	G	A	793.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr6	36359695	rs147244815	TTTA	T	359.73	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:6,22:0.79:28
chr6	36368169	rs6917489	G	A	1612.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr6	36393582	.	A	AC	1357.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=50.29;SOR=5.211;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr6	36393583	.	ATATAT	A	1357.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.80;SOR=5.486;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr6	36393590	rs113872867	T	A	1501.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=48.44;SOR=5.486;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr6	36393592	.	T	A	1526.77	.	AC=2;AF=1.00;AN=2;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.90;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr6	36393594	rs201851804	T	A	1526.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.62;SOR=3.737;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr6	36393816	rs664370	A	G	4303.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr6	36446975	rs2239808	G	C	5232.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr6	36447287	rs2239807	A	G	770.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr6	36447556	.	ATTTTT	A	268.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.309;ClippingRankSum=-0.000;DP=34;ExcessHet=3.0103;FS=11.761;MLEAC=1;MLEAF=0.500;MQ=59.66;MQRankSum=-0.000;QD=22.39;ReadPosRankSum=2.362;SOR=2.788;set=HC	GT:AD:AF:DP	0/1:4,8:0.67:12
chr6	36452603	rs11450552	T	TA	1000.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.932;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=0.710;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.000;QD=6.85;ReadPosRankSum=0.789;SOR=0.815;set=HC	GT:AD:AF:DP	0/1:70,76:0.52:146
chr6	36465715	rs147832342	CTT	C	1590.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.872;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=2.854;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.331;QD=17.87;ReadPosRankSum=-0.260;SOR=1.845;set=HC	GT:AD:AF:DP	1/1:18,71:0.80:89
chr6	36466366	rs374274208	CT	C	52.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.077;ClippingRankSum=-0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.77;ReadPosRankSum=-2.376;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:7,7:0.50:14
chr6	36467791	rs659726	C	G	3943.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:2,141:0.99:143
chr6	36475200	rs16888690	T	C	572.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr6	36483295	rs150740806	CCACA	C,CCA	452.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.705;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=17.41;ReadPosRankSum=-3.263;SOR=1.085;set=HC	GT:AD:AF:DP	1/2:4,8,14:0.31,0.54:26
chr6	36492269	rs3752479	C	G	3109.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr6	36492375	rs3752478	T	G	523.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr6	36493265	rs605684	T	C	2878.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:1,111:0.99:112
chr6	36493330	rs6927896	C	T	4205.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:2,164:0.99:166
chr6	36508036	rs6913714	G	T	2900.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr6	36686272	rs236487	C	T	1249.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr6	36689030	rs236478	A	C	7918.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr6	36689961	rs183541	A	C	11867.77	.	AC=2;AF=1.00;AN=2;DB;DP=451;set=Intersection	GT:AD:AF:DP	1/1:0,439:1.00:439
chr6	36700202	.	G	GGGT	364	.	AC=2;AF=1.00;AN=2;BRF=0.38;FR=1.0000;HP=9;HapScore=2;MGOF=54;MMLQ=22;MQ=62.0;NF=1;NR=9;PP=364;QD=37.6;SC=AATGTGGGGGGGGGGTGTTAC;SbPval=0.58;Source=Platypus;TC=12;TCF=1;TCR=11;TR=10;WE=36700210;WS=36700192;set=Platypus	GT:AD:AF:DP	1/1:2,10:0.83:12
chr6	36710269	rs3752480	A	G	3258.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:2,122:0.98:124
chr6	36711562	rs9380594	G	C	10827.77	.	AC=2;AF=1.00;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	1/1:4,420:0.99:424
chr6	36712668	rs3833930	CA	C	3014.73	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr6	36713263	rs763046	A	G	2907.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr6	36714491	rs929051	G	A	626.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr6	36715833	rs1010790	A	T	1798.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr6	36733132	rs763048	G	A	14290.77	.	AC=2;AF=1.00;AN=2;DB;DP=555;set=Intersection	GT:AD:AF:DP	1/1:2,549:1.00:551
chr6	36746581	rs236418	C	T	1437.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr6	36759741	rs9366916	G	A	968.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr6	36759768	rs9349011	C	A	1431.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr6	36767920	rs11419511	T	TG	888.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr6	36789940	rs3842097	C	CG	4965.73	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr6	36790639	rs4711470	G	A	611.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr6	36824399	rs2071823	C	T	5062.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:2,191:0.99:193
chr6	36842427	rs2303993	C	G	1031.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr6	36853685	rs11461876	G	GC	601.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr6	36853786	rs11461877	A	AG	2145.73	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr6	36853857	rs5875560	T	TCGC	7233.73	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr6	36884490	rs2293394	C	T	1172.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr6	36922385	rs1405070	G	A	777.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr6	36930687	rs17624006	G	A	1637.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr6	36930814	rs41272198	T	C	6536.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:6,232:0.97:238
chr6	36931162	rs2296934	A	G	8698.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr6	36936640	rs1042987	G	A	7295.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr6	36944495	rs708007	A	G	376.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr6	36949527	rs2293390	C	T	1828.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr6	36978834	rs1753288	A	G	5133.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr6	36978879	rs1724087	T	C	2473.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr6	36988664	.	ATG	A	100	.	AC=1;AF=0.500;AN=2;BRF=0.26;FR=0.5000;HP=1;HapScore=2;MGOF=0;MMLQ=22;MQ=60.0;NF=0;NR=3;PP=100;QD=34.6666666667;SC=GTATGTATGCATGTGTGTGTG;SbPval=1.0;Source=Platypus;TC=15;TCF=2;TCR=13;TR=3;WE=36988673;WS=36988654;set=Platypus	GT:AD:AF:DP	1/0:12,3:0.20:15
chr6	37138023	.	GGCAGCA	G,GGCA	3264.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=95;set=Intersection	GT:AF:DP	1/2:0.12,0.88:81
chr6	37138220	rs262936	C	G	8022.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr6	37139322	rs262938	T	C	2438.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr6	37249913	rs41272216	C	A	3895.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr6	37349066	rs34150698	G	A	7556.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:1,281:1.00:282
chr6	37418263	rs2270687	A	G	1309.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr6	37446061	rs3830396	TCA	T	4857.73	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr6	37447075	rs2797790	G	A	2703.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr6	37447994	rs1874736	C	G	705.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr6	37450914	rs10692	T	C	1975.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr6	37501967	rs2797786	A	G	2455.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr6	37522966	rs6942122	T	C	614.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr6	37617121	rs116499511	G	T	293.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr6	38084569	rs2295791	C	A	856.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr6	38147355	rs6458044	A	G	7192.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr6	38455368	rs113789617	CGA	C	275.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.999;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.70;ReadPosRankSum=1.691;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:3,11:0.79:14
chr6	38472125	rs9380754	GG	CT	1580.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr6	38520431	rs113914480	T	C	256.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.68;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr6	38650628	rs4746	T	G	9670.77	.	AC=2;AF=1.00;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	1/1:0,363:1.00:363
chr6	38670837	rs1049346	G	A	7374.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr6	38697839	rs56284095	A	G	507.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:1,21:0.95:22
chr6	38702111	rs112260651	C	A	40.98	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=8.20;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr6	38702212	rs1698996	G	A	481.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr6	38718186	rs56323406	C	T	705.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr6	38718402	rs56148146	G	A	1549.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr6	38746090	rs1033526	A	G	511.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.65;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr6	38746098	rs1033525	C	T	511.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.65;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr6	38750705	rs3800357	A	G	440.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr6	38771096	rs12192604	T	C	2857.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr6	38783177	rs56093987	G	A	1421.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr6	38793815	rs12197467	G	A	934.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr6	38851305	rs62398567	C	T	822.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr6	38851585	rs72852780	T	A	1961.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:1,69:0.99:70
chr6	38873960	rs7750330	G	A	357.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr6	38877605	rs4714198	C	A	2711.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr6	38885010	rs11291395	TA	T	1990.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr6	38899485	rs9296268	G	C	333.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr6	38905667	rs199520405	G	GT	109.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.789;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=2.147;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.74;ReadPosRankSum=-0.038;SOR=0.264;set=HC	GT:AD:AF:DP	0/1:28,12:0.30:40
chr6	38906072	rs2073037	A	G	2108.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr6	38913177	rs522327	A	G	4080.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr6	38952246	rs34819199	GCACA	G	858.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.94;SOR=1.127;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr6	38952287	rs35676616	G	T	586.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr6	38957771	rs3737095	T	C	2413.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:2,84:0.98:86
chr6	38957853	rs3737094	A	G	6982.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:1,256:1.00:257
chr6	38979946	rs9296273	T	A	293.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr6	39016636	rs10305420	C	T	1741.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr6	39033420	rs910163	A	G	2083.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.31;SOR=2.461;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr6	39033427	rs910162	A	T	2274.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.36;SOR=2.024;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr6	39033602	rs6918287	A	G	4665.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr6	39033778	rs3765466	T	A	1620.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr6	39033898	rs9296276	G	T	1239.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr6	39034072	rs6923761	G	A	4418.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:3,173:0.98:176
chr6	39034210	rs4711572	A	G	1544.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:1,58:0.98:59
chr6	39034248	rs9296277	G	A	891.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:1,34:0.97:35
chr6	39040654	rs2235868	A	C	8082.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:3,305:0.99:308
chr6	39041502	rs1042044	A	C	4444.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:2,163:0.99:165
chr6	39047035	rs5875654	CAG	C	199.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.315;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.06;ReadPosRankSum=-1.418;SOR=0.774;set=HC	GT:AD:AF:DP	0/1:83,14:0.14:97
chr6	39048491	rs1126476	A	C	1785.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr6	39162206	rs2815098	A	G	2310.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr6	39162227	rs1541816	G	A	2331.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr6	39278794	rs72855550	G	C	3639.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:2,143:0.99:145
chr6	39278848	.	GCACACACA	G,GCA	1256.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.17;QD=38.08;SOR=3.611;set=HC	GT:AD:AF:DP	1/2:0,8,25:0.24,0.76:33
chr6	39282036	rs10947804	T	C	5143.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr6	39282748	rs11756070	G	A	1997.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:1,75:0.99:76
chr6	39282806	rs11756091	G	T	2777.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:1,99:0.99:100
chr6	39283083	rs11753141	G	A	9663.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:2,374:0.99:376
chr6	39284050	rs1535500	G	T	2173.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr6	39284184	rs3734618	A	G	2475.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr6	39290200	rs3734619	C	T	6773.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr6	39545689	rs12697946	T	G	877.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:2,35:0.95:37
chr6	39563730	rs7738728	C	T	214.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr6	39563863	rs7738892	C	T	1889.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:1,73:0.99:74
chr6	39585399	rs2466406	A	G	579.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr6	39602697	.	A	C	2060.77	.	AC=2;AF=1.00;AN=2;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr6	39682367	rs303701	G	A	4670.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr6	39688367	rs10947834	T	C	710.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr6	39693271	rs10947835	C	G	756.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr6	39828593	rs2504099	A	T	1721.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr6	39828862	rs2504098	A	C	4853.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr6	39832111	rs2504787	A	G	1678.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr6	39832363	rs2504094	C	G	753.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=11.461;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.92;ReadPosRankSum=2.116;SOR=5.207;set=HC	GT:AD:AF:DP	1/1:1,27:0.96:28
chr6	39832964	rs2504093	T	C	2230.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr6	39839164	rs2504088	T	C	851.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:2,34:0.94:36
chr6	39846137	rs2504086	A	G	2477.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr6	39851818	rs3003929	G	A	3262.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr6	39855112	rs3003945	T	G	529.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr6	39855427	rs3008810	C	T	879.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr6	39855490	rs5875688	C	CTGGA	502.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr6	39864730	rs3008815	C	T	5824.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:1,216:1.00:217
chr6	39865047	rs3004067	T	C	5229.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr6	39866805	rs3830992	A	AACAATGGGC	6549.73	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr6	39869066	rs882559	G	C	4950.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr6	39873682	rs41273136	G	A	544.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr6	39881102	rs7762875	A	T	6287.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:2,234:0.99:236
chr6	40399446	rs7775772	T	C	2727.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:1,99:0.99:100
chr6	40400868	rs9394693	C	T	2793.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.98;SOR=1.646;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr6	40400877	rs28385630	G	A	2581.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.51;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr6	40996381	rs742492	G	A	1671.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr6	40998141	rs736795	G	A	8731.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:1,333:1.00:334
chr6	40998344	rs9369256	G	C	2277.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:1,78:0.99:79
chr6	41010368	rs9369260	C	G	349.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr6	41011266	rs932399	C	T	762.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr6	41020205	rs6939989	A	G	1725.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr6	41029109	rs2073014	T	C	5971.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:2,223:0.99:225
chr6	41029342	rs2076472	T	C	7749.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:3,284:0.99:287
chr6	41036770	rs2294695	A	G	963.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr6	41037778	rs2272986	C	T	2957.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.95;SOR=0.728;set=HC	GT:AD:AF:DP	1/1:0,114:1.00:114
chr6	41038845	rs13191323	C	T	9006.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	1/1:2,333:0.99:335
chr6	41052002	rs6908595	A	G	649.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr6	41162060	rs13216201	G	T	152.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr6	41162518	rs3747742	T	C	5068.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr6	41162715	rs4711657	G	A	349.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr6	41169021	rs5875743	C	CA	1324.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr6	41196034	rs6458202	T	C	1931.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.90;SOR=1.508;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr6	41196040	rs6458203	T	C	1931.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.92;SOR=1.455;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr6	41196041	rs6458204	C	T	1931.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.92;SOR=1.455;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr6	41196095	rs6458205	C	T	3678.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr6	41196104	rs10700462	C	CCTT	3951.73	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr6	41196156	rs2803496	C	T	3414.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr6	41196605	rs9369265	T	C	3162.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:2,117:0.98:119
chr6	41196727	rs2101269	C	T	4749.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr6	41197785	rs9296357	T	C	5557.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:1,210:1.00:211
chr6	41197857	rs7769759	C	T	3794.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr6	41198909	rs4337930	T	C	803.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr6	41199973	rs1825409	C	T	2658.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr6	41200245	rs7746632	A	G	1967.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr6	41204005	rs9394775	C	G	347.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.84;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr6	41204049	rs9394776	C	T	1244.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr6	41204092	rs9349185	C	T	3796.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.67;SOR=1.450;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr6	41204092	.	CTC	TTG	2536	.	AC=2;AF=1.00;AN=2;BRF=0.41;FR=1.0000;HP=3;HapScore=1;MGOF=18;MMLQ=26;MQ=60.0;NF=40;NR=18;PP=2536;QD=20;SC=CCCCACACCCCTCTGTCATCG;SbPval=0.49;Source=Platypus;TC=60;TCF=42;TCR=18;TR=58;WE=41204102;WS=41204082;set=Platypus	GT:AD:AF:DP	1/1:2,58:0.97:60
chr6	41204094	rs9394777	C	G	3796.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.67;SOR=1.450;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr6	41204329	rs9349186	A	T	2288.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:2,85:0.98:87
chr6	41486990	rs2496647	G	A	2273.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr6	41533579	rs2104506	C	A	2942.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:2,111:0.98:113
chr6	41537817	.	G	GACACACACAC	378.73	.	AC=2;AF=1.00;AN=2;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=75.75;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr6	41552429	rs4714489	G	A	2299.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr6	41553057	rs72858995	C	T	834.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr6	41558198	rs55892416	G	A	825.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr6	41562514	rs41273788	C	T	2925.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr6	41562530	rs9367109	A	G	3469.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr6	41613772	rs7763699	A	G	2877.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr6	41620975	rs2842657	A	G	6351.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr6	41621271	rs2230088	G	A	5165.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:4,191:0.98:195
chr6	41721682	rs59644697	G	GT	5301.73	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr6	41740483	.	C	CGTGTGTGTGT,CGTGTGTGT	728.73	.	AC=1,0;AF=0.500,0.00;AN=2;DP=26;set=Intersection	GT:AF:DP	0/1:0.86:21
chr6	41748279	rs10947986	A	G	648.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr6	41753380	rs3747753	G	T	1030.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr6	41754370	rs10947987	C	T	2864.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:2,93:0.98:95
chr6	41754573	rs140326303	C	CCTT	21985.73	.	AC=2;AF=1.00;AN=2;DB;DP=528;set=Intersection	GT:AD:AF:DP	1/1:2,494:1.00:496
chr6	41755708	rs41273794	C	T	1402.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr6	41773576	rs2185798	G	C	10518.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	1/1:1,379:1.00:380
chr6	41774815	rs11393933	T	TA	376.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.789;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.94;ReadPosRankSum=1.744;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:1,20:0.95:21
chr6	41889223	rs10947995	G	A	1818.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr6	41898096	rs2479726	A	G	1293.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr6	41905174	rs2479717	T	A	1621.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr6	42016246	rs10456506	T	C	27139.77	.	AC=2;AF=1.00;AN=2;DB;DP=1006;set=Intersection	GT:AD:AF:DP	1/1:0,1000:1.00:1000
chr6	42023618	rs142602868	A	ATAC	3460.73	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr6	42025318	rs12208813	G	A	2760.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr6	42036395	rs2492926	A	C	1144.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr6	42044945	rs3800286	G	A	4132.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr6	42094699	rs6940849	G	T	1285.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr6	42110263	rs6911399	T	C	531.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr6	42123317	rs1132156	A	C	5321.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr6	42141269	rs9471793	G	A	432.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr6	42153609	rs9471799	C	T	6124.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr6	42154104	rs6909313	G	A	711.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr6	42155611	rs9462780	T	G	651.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr6	42155666	rs9462781	C	A	342.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr6	42155930	rs9462782	G	A	657.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr6	42156031	rs151241798	CGTGTGTGTGTGTGTGTGT	CGT,C	594.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=17;set=Intersection	GT:AF:DP	1/1:1.00:14
chr6	42156239	rs73434275	G	A	1239.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr6	42162575	rs1474867	A	G	1130.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr6	42176451	rs6936290	G	A	1382.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr6	42176737	.	G	GT	417.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.450;ClippingRankSum=0.000;DP=23;ExcessHet=3.0103;FS=3.979;MLEAC=2;MLEAF=1.000;MQ=60.47;MQRankSum=0.535;QD=27.85;ReadPosRankSum=-0.812;SOR=1.108;set=HC	GT:AD:AF:DP	1/1:1,14:0.93:15
chr6	42176744	rs7771519	G	T	426.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.584;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=3.979;MLEAC=2;MLEAF=1.000;MQ=60.67;MQRankSum=0.535;QD=28.45;ReadPosRankSum=-1.043;SOR=1.108;set=HC	GT:AD:AF:DP	1/1:1,14:0.93:15
chr6	42182183	rs1884317	C	T	354.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr6	42185564	rs9471809	A	C	9156.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:1,342:1.00:343
chr6	42185712	rs9471810	A	T	2630.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr6	42225993	rs76236447	G	C	3572.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr6	42532102	rs3749897	C	T	2121.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr6	42600319	rs5014584	A	G	741.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr6	42608123	rs2747120	T	G	223.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.38;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr6	42611936	.	TA	T	158.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.533;ClippingRankSum=0.000;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.20;ReadPosRankSum=-1.392;SOR=0.554;set=HC	GT:AD:AF:DP	0/1:49,23:0.32:72
chr6	42612312	rs7767888	C	T	967.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr6	42615950	rs2273176	C	T	2031.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr6	42626341	rs7748447	G	A	2306.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr6	42626564	rs35416750	TA	T	1415.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.874;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=1.428;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=0.877;QD=12.75;ReadPosRankSum=0.458;SOR=0.814;set=HC	GT:AD:AF:DP	1/1:13,98:0.88:111
chr6	42627258	rs60472118	TACAC	T	666.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr6	42627264	rs201025004	C	T	676.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr6	42627430	rs6916713	C	T	7001.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.17;SOR=0.934;set=HC	GT:AD:AF:DP	1/1:0,155:1.00:155
chr6	42627434	rs6917033	G	A	6963.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.07;SOR=0.855;set=HC	GT:AD:AF:DP	1/1:0,158:1.00:158
chr6	42638564	rs4460209	T	C	5388.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr6	42641704	rs761537	G	A	799.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:1,26:0.96:27
chr6	42644623	rs2038261	A	G	2091.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr6	42650766	rs34240626	G	GT	381.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr6	42652667	rs434505	G	A	3097.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr6	42658752	rs373341	T	C	3355.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr6	42666020	rs361524	G	A	2096.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr6	42666061	rs434102	T	C	4390.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr6	42666145	rs425876	C	T	10237.77	.	AC=2;AF=1.00;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	1/1:0,384:1.00:384
chr6	42666164	rs390659	G	C	11337.77	.	AC=2;AF=1.00;AN=2;DB;DP=439;set=Intersection	GT:AD:AF:DP	1/1:0,434:1.00:434
chr6	42666365	rs389999	G	C	1712.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr6	42689411	rs6928781	G	A	1542.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr6	42689755	rs7764439	A	G	10208.77	.	AC=2;AF=1.00;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	1/1:0,364:1.00:364
chr6	42713618	rs2234026	A	G	11855.77	.	AC=2;AF=1.00;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	1/1:0,428:1.00:428
chr6	42853842	rs2179719	A	G	851.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr6	42989057	rs9296409	T	C	886.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr6	43014298	rs9394939	TT	CC	9591.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr6	43096609	rs115266754	G	A	2126.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr6	43109751	rs6905948	G	A	6537.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr6	43112382	rs7759437	C	T	6503.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:1,242:1.00:243
chr6	43114211	rs60930750	C	CT	414.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr6	43154091	rs941849	C	G	7074.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr6	43166677	.	C	CT	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.257;ClippingRankSum=0.000;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.81;ReadPosRankSum=-1.237;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:30,9:0.23:39
chr6	43170364	.	C	A	1646.77	.	AC=2;AF=1.00;AN=2;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr6	43182657	rs1214714	G	A	854.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr6	43188716	rs2756178	A	T	3598.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr6	43190135	rs62417521	C	T	3591.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr6	43220359	rs35235406	C	CA	637.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.635;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.66;ReadPosRankSum=1.557;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:24,42:0.64:66
chr6	43221264	rs12664472	T	C	1363.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr6	43222526	rs11318521	GT	G	4114.73	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr6	43225408	rs7769668	G	A	1640.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr6	43230970	rs3800294	G	C	6215.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr6	43231163	rs10948069	T	C	2675.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:1,102:0.99:103
chr6	43250387	rs6936397	G	C	2768.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr6	43251912	rs3800297	A	G	2169.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr6	43252029	rs3800298	T	C	4379.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr6	43252107	rs11269387	G	GGAGGGGCTTCTCCAGAACCAAGGT	1896.73	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr6	43252141	rs7763131	T	C	639.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr6	43269029	rs1574430	A	C	2675.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr6	43269179	rs2841648	CC	AA	1573.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr6	43270097	rs2651184	T	C	1686.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr6	43270326	rs2841646	A	G	406.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr6	43273604	rs2242416	A	G	4417.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr6	43276390	rs2254303	G	A	4658.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr6	43306346	rs1459675	A	G	12455.77	.	AC=2;AF=1.00;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	1/1:1,449:1.00:450
chr6	43336771	rs9381238	C	T	1357.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr6	43399837	rs700008	A	G	5181.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:2,181:0.99:183
chr6	43401105	rs9394952	G	A	4978.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr6	43414216	rs1214746	T	C	891.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr6	43414234	rs1214747	G	C	698.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr6	43414810	.	T	G	454.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.709;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;FS=7.147;MLEAC=1;MLEAF=0.500;MQ=56.89;MQRankSum=-6.146;QD=9.28;ReadPosRankSum=1.239;SOR=0.165;set=HC	GT:AD:AF:DP	0/1:35,14:0.29:49
chr6	43414864	.	G	A	264.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.450;ClippingRankSum=0.000;DP=97;ExcessHet=3.0103;FS=4.379;MLEAC=1;MLEAF=0.500;MQ=58.60;MQRankSum=-8.877;QD=2.73;ReadPosRankSum=0.286;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:84,13:0.13:97
chr6	43414875	.	C	T	162.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.350;ClippingRankSum=0.000;DP=122;ExcessHet=3.0103;FS=4.231;MLEAC=1;MLEAF=0.500;MQ=58.89;MQRankSum=-10.004;QD=1.33;ReadPosRankSum=-0.893;SOR=0.552;set=HC	GT:AD:AF:DP	0/1:109,13:0.11:122
chr6	43469445	rs371295342	GACACAC	G	723.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.09;SOR=1.371;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr6	43469505	.	GTC	G	125	.	AC=1;AF=0.500;AN=2;BRF=0.31;FR=0.5000;HP=2;HapScore=2;MGOF=61;MMLQ=27;MQ=60.0;NF=0;NR=12;PP=125;QD=11.25;SC=CACTCTCTCTGTCTCTCTCTC;SbPval=1.0;Source=Platypus;TC=17;TCF=3;TCR=14;TR=12;WE=43469514;WS=43469495;set=Platypus	GT:AD:AF:DP	0/1:5,12:0.71:17
chr6	43469814	.	A	T	157	.	AC=1;AF=0.500;AN=2;BRF=0.39;FR=0.5002;HP=2;HapScore=2;MGOF=31;MMLQ=28;MQ=53.35;NF=7;NR=1;PP=157;QD=23.9714015684;SC=ACACACACACACTCTCTCTCT;SbPval=0.78;Source=Platypus;TC=17;TCF=14;TCR=3;TR=8;WE=43469822;WS=43469811;set=Platypus	GT:AD:AF:DP	0/1:9,8:0.47:17
chr6	43469814	.	A	ACT	106.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.176;ClippingRankSum=-0.000;DP=15;ExcessHet=3.0103;FS=2.522;MLEAC=1;MLEAF=0.500;MQ=57.14;MQRankSum=-0.615;QD=8.21;ReadPosRankSum=0.140;SOR=0.160;set=HC	GT:AD:AF:DP	0/1:6,7:0.54:13
chr6	43492578	rs2257082	G	A	1106.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr6	43493035	.	G	GT	45.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.560;ClippingRankSum=0.000;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.63;ReadPosRankSum=1.327;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:20,8:0.29:28
chr6	43494319	rs1150800	A	G	2159.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr6	43501580	rs11404474	C	CA	499.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr6	43514527	rs374970458	GA	G	87.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.137;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=3.083;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=1.461;QD=1.66;ReadPosRankSum=-0.554;SOR=1.360;set=HC	GT:AD:AF:DP	0/1:38,15:0.28:53
chr6	43521263	.	TAC	T	466.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.919;ClippingRankSum=0.000;DP=143;ExcessHet=3.0103;FS=3.380;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.45;ReadPosRankSum=0.339;SOR=0.346;set=HC	GT:AD:AF:DP	0/1:81,24:0.23:105
chr6	43533305	rs11362688	TA	T	223.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.184;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.47;ReadPosRankSum=2.143;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:26,24:0.48:50
chr6	43538208	rs35642078	T	C	1180.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr6	43538501	.	C	CA	85.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.195;ClippingRankSum=0.000;DP=108;ExcessHet=3.0103;FS=5.413;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=2.691;QD=0.92;ReadPosRankSum=-2.104;SOR=1.547;set=HC	GT:AD:AF:DP	0/1:74,19:0.20:93
chr6	43745107	rs3024997	G	A	700.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr6	43745577	rs3024998	C	T	1565.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;MQ=59.94;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr6	43746169	rs3025000	C	T	1817.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr6	43748643	rs3025052	T	C	940.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr6	44107200	rs11967633	G	A	4349.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr6	44107365	rs41282654	G	A	5525.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr6	44108150	rs7738970	T	C	4945.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr6	44116785	rs35937558	T	TC	5477.73	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr6	44122416	rs10537719	TCTC	T	1993.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.23;QD=43.34;SOR=0.780;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr6	44134581	rs914503	C	T	4653.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr6	44134610	rs34901210	TTCC	T	2950.73	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.75;QD=42.15;SOR=2.439;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr6	44136667	rs35889800	A	AT	794.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=21.48;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr6	44136899	rs4711770	A	G	624.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr6	44136911	rs112447145	T	C	686.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr6	44140275	rs1418487	A	G	1123.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr6	44140320	rs1418488	C	G	607.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr6	44140818	rs3813500	C	G	3396.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr6	44145181	rs4711775	C	T	1028.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr6	44147821	rs34710081	A	G	4003.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr6	44185254	rs3734701	T	C	3917.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr6	44191254	rs11752118	A	G	386.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.78;SOR=4.047;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr6	44216544	rs112518852	GT	G	5183.73	.	AC=2;AF=1.00;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	1/1:26,288:0.92:314
chr6	44218120	rs13296	A	G	6548.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr6	44220076	rs504697	T	C	2601.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr6	44222161	rs35131506	C	CTG	1822.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr6	44223010	rs1875324	G	T	10489.77	.	AC=2;AF=1.00;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	1/1:1,383:1.00:384
chr6	44228162	rs2233437	G	A	3154.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:2,115:0.98:117
chr6	44240193	rs571770	C	G	477.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr6	44240559	rs524533	C	T	8723.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:0,327:1.00:327
chr6	44243559	rs3734710	A	G	5639.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr6	44245930	rs325018	C	T	4407.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr6	44246049	rs325017	A	G	2425.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr6	44247951	rs484757	T	G	9342.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:0,342:1.00:342
chr6	44250165	rs516582	A	G	6674.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr6	44253617	rs324142	C	T	635.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr6	44253749	rs324143	A	G	2328.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr6	44255459	rs324146	G	A	4876.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr6	44268135	rs325009	C	T	690.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr6	44268371	rs325008	T	C	5556.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr6	44269023	rs325007	T	C	12484.77	.	AC=2;AF=1.00;AN=2;DB;DP=482;set=Intersection	GT:AD:AF:DP	1/1:0,475:1.00:475
chr6	44269193	rs498512	C	T	6445.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr6	44269640	rs325006	G	A	1148.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr6	44269680	rs325005	C	G	2570.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr6	44270365	rs325004	C	G	1785.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr6	44270768	rs325002	G	T	2275.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr6	44270936	rs325001	C	T	5484.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:2,198:0.99:200
chr6	44273546	rs324137	A	C	4144.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.07;SOR=0.757;set=HC	GT:AD:AF:DP	1/1:0,159:1.00:159
chr6	44274797	rs7740535	T	C	7350.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr6	44275011	rs324136	T	C	10976.77	.	AC=2;AF=1.00;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	1/1:0,417:1.00:417
chr6	44280812	rs167772	C	T	7230.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr6	44310854	rs10948132	G	A	2866.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr6	44320548	rs4714783	T	A	5330.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr6	44355423	rs2297333	C	T	3334.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr6	44355682	rs34753552	G	A	1884.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr6	44355699	rs2297331	T	C	1181.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr6	44357884	rs6908640	T	G	713.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr6	44360680	rs6942323	A	G	580.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr6	44988149	rs1475534	C	T	161.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr6	45296618	rs12205523	T	C	986.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr6	45916959	rs190785265	C	G	3598.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr6	45922849	rs3734206	C	T	6478.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr6	46293328	rs2277121	G	A	1261.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr6	46563817	rs7761731	A	T	5428.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr6	46593321	rs3799869	C	T	313.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr6	46620252	rs12192544	C	G	6575.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:2,257:0.99:259
chr6	46623698	rs3757241	T	C	2636.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr6	46626353	rs953062	A	G	2782.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr6	46632594	rs35884480	T	C	4330.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:2,160:0.99:162
chr6	46636556	.	G	GT	42.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.625;ClippingRankSum=0.000;DP=79;ExcessHet=3.0103;FS=1.355;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.67;ReadPosRankSum=1.887;SOR=0.416;set=HC	GT:AD:AF:DP	0/1:51,13:0.20:64
chr6	46649231	rs7740677	C	T	8769.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,325:1.00:325
chr6	46657057	rs3799277	A	G	4878.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr6	46658905	rs9381472	C	G	6417.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:1,219:1.00:220
chr6	46661937	rs55724083	CT	C	112.90	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.365;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=9.41;ReadPosRankSum=1.167;SOR=0.495;set=HC	GT:AD:AF:DP	1/1:1,11:0.92:12
chr6	46672943	rs1051931	A	G	1874.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr6	46676019	rs2216465	C	G	822.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr6	46682079	rs1362931	A	C	1643.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr6	46684222	rs1805017	C	T	3686.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:1,138:0.99:139
chr6	46714466	rs9367255	C	T	965.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.40;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr6	46714598	rs9349374	C	T	5092.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr6	46726441	rs9395212	G	C	317.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr6	46766467	rs872018	GG	CC	3009.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr6	46803018	rs2297020	A	T	729.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr6	46803102	rs2297019	A	G	1713.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr6	46826508	rs613870	G	A	9035.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,329:1.00:329
chr6	46826715	rs572248	T	A	14011.77	.	AC=2;AF=1.00;AN=2;DB;DP=533;set=Intersection	GT:AD:AF:DP	1/1:1,527:1.00:528
chr6	46826844	rs571247	T	C	9114.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:0,343:1.00:343
chr6	46826910	rs611779	G	A	7247.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:1,259:1.00:260
chr6	46826979	rs9381487	A	G	6503.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr6	46827126	rs610856	C	T	6231.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr6	46827239	rs9395218	C	T	4010.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr6	46828670	rs540727	A	G	1098.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr6	46831060	rs476374	C	T	10709.77	.	AC=2;AF=1.00;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	1/1:0,407:1.00:407
chr6	46832741	rs529201	T	C	4851.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr6	46834685	rs586024	G	A	5310.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.69;SOR=1.310;set=HC	GT:AD:AF:DP	1/1:0,199:1.00:199
chr6	46834906	rs5875987	TG	T	2363.73	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr6	46836995	rs515866	T	C	250.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr6	46838659	rs10668775	T	TTG	765.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr6	46856100	rs678312	G	A	5939.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:1,223:1.00:224
chr6	46856263	rs677439	G	A	3674.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:1,133:0.99:134
chr6	46867717	rs220702	C	T	4461.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr6	46988238	rs11433059	C	CA	72.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.189;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.748;QD=0.83;ReadPosRankSum=0.040;SOR=0.572;set=HC	GT:AD:AF:DP	0/1:70,18:0.20:88
chr6	47220867	.	CGT	C	72	.	AC=1;AF=0.500;AN=2;BRF=0.32;FR=0.5000;HP=2;HapScore=1;MGOF=4;MMLQ=24;MQ=60.34;NF=5;NR=0;PP=72;QD=16.2;SC=CAGGCGTATGCGTGTGTGTGT;SbPval=1.0;Source=Platypus;TC=23;TCF=19;TCR=4;TR=5;WE=47220876;WS=47220862;set=Platypus	GT:AD:AF:DP	1/0:18,5:0.22:23
chr6	47445926	.	CTGG	C	87.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.031;ClippingRankSum=0.000;DP=132;ExcessHet=3.0103;FS=1.264;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.71;ReadPosRankSum=0.733;SOR=0.908;set=HC	GT:AD:AF:DP	0/1:112,11:0.09:123
chr6	47445927	rs9349406	T	A	2623.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:11,109:0.91:120
chr6	47547070	rs34735056	T	TAA	426.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=16.41;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr6	47563692	rs2039503	C	T	10162.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	1/1:0,384:1.00:384
chr6	47649265	rs17541107	T	A	5669.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr6	47675922	rs16876334	C	T	2643.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:2,100:0.98:102
chr6	47678678	rs944056	C	G	1960.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr6	47681494	rs6916562	T	C	1553.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr6	47682604	rs9369738	A	C	5148.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr6	47682949	rs16876369	C	T	4477.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr6	47686101	rs6914013	T	C	2444.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr6	47686235	rs11754756	C	A	4354.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:2,158:0.99:160
chr6	47847179	rs3799276	A	G	8287.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr6	47847401	rs2068006	A	G	7528.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:1,285:1.00:286
chr6	47847683	rs9367307	A	T	465.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr6	49403282	rs8589	T	C	1585.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:1,63:0.98:64
chr6	49409487	rs9473555	G	C	2358.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr6	49409737	rs9473557	T	C	3426.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr6	49411477	rs7744595	G	C	1284.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr6	49411619	rs6458690	A	G	1713.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr6	49412433	rs1141321	C	T	4764.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:4,178:0.98:182
chr6	49415351	rs56408395	T	TA	349.86	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.143;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.36;MQRankSum=0.537;QD=11.66;ReadPosRankSum=0.920;SOR=0.631;set=HC	GT:AD:AF:DP	1/1:5,25:0.83:30
chr6	49421241	rs7769646	G	A	1682.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr6	49425521	rs2229384	C	T	2843.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:2,103:0.98:105
chr6	49437853	rs11333073	AT	A	848.74	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:8,57:0.88:65
chr6	49439805	rs4267943	G	A	22243.77	.	AC=2;AF=1.00;AN=2;DB;DP=851;set=Intersection	GT:AD:AF:DP	1/1:0,838:1.00:838
chr6	49440363	rs4348317	C	A	940.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr6	49440614	rs4469291	A	T	849.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr6	49479775	rs1480615	A	T	1067.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr6	49485047	rs78391179	A	G	1516.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr6	49494241	rs9367359	A	G	9895.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	1/1:0,381:1.00:381
chr6	49518599	rs45551532	T	C	1010.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr6	49518914	rs6919674	C	G	7297.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr6	49519169	rs41273692	T	C	3068.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr6	49519279	rs41273694	G	C	1136.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr6	49663465	rs2248263	G	A	1203.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr6	49663567	rs36069724	A	G	4058.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:2,159:0.99:161
chr6	49815873	rs373553362	AT	A	150.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.153;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=3.324;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.720;QD=1.37;ReadPosRankSum=0.145;SOR=0.393;set=HC	GT:AD:AF:DP	0/1:80,30:0.27:110
chr6	49989521	.	AT	A	277.77	.	AC=2;AF=1.00;AN=2;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.68;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr6	49989524	.	T	A	286.80	.	AC=2;AF=1.00;AN=2;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.97;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr6	50681817	rs35125047	CT	C	820.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.885;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=0.952;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.646;QD=7.82;ReadPosRankSum=0.499;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:25,80:0.76:105
chr6	50712784	rs3765306	A	G	1987.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr6	50791584	rs71687472	CACAA	C	6642.73	.	AC=2;AF=1.00;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.13;SOR=1.017;set=HC	GT:AD:AF:DP	1/1:0,154:1.00:154
chr6	50791592	.	A	G	6676.77	.	AC=2;AF=1.00;AN=2;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.26;SOR=1.040;set=HC	GT:AD:AF:DP	1/1:0,158:1.00:158
chr6	51503597	.	C	CAAA	199.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.842;ClippingRankSum=-0.000;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.07;MQRankSum=0.253;QD=24.97;ReadPosRankSum=-1.282;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:1,7:0.88:8
chr6	51512707	rs2580009	T	C	276.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr6	51586771	rs9349593	G	A	9281.77	.	AC=2;AF=1.00;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	1/1:2,349:0.99:351
chr6	51613177	rs765525	C	T	5798.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr6	51618170	rs1326605	T	G	4625.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr6	51619808	rs9370049	G	A	589.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr6	51640751	rs3920621	C	G	1798.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr6	51656236	rs7765455	G	T	1025.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr6	51732807	rs12210295	C	T	9400.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	1/1:0,348:1.00:348
chr6	51875250	rs2435322	A	C	2600.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr6	51890823	rs9296669	G	A	5782.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr6	51890852	rs9689306	C	G	6593.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr6	51891011	rs2499480	T	C	3070.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr6	51913240	rs10948667	G	A	3466.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:2,132:0.99:134
chr6	51914898	rs9395759	T	C	920.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr6	51914956	rs9370096	G	A	2140.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr6	51924774	rs1896976	A	G	5751.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr6	51930886	rs5876252	T	TA	1168.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.371;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=1.955;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.50;ReadPosRankSum=0.669;SOR=0.437;set=HC	GT:AD:AF:DP	0/1:42,81:0.66:123
chr6	51935747	rs17576809	C	T	2654.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr6	51936846	rs3936986	T	C	3875.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr6	51944847	rs1892274	T	C	968.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr6	51949862	rs9370097	A	G	1066.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr6	52109408	rs3215541	GT	G	421.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:1,23:0.96:24
chr6	52131254	rs10807441	C	T	553.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr6	52137313	rs12207056	C	T	6474.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr6	52138226	rs2235714	C	G	1552.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr6	52141670	rs3765446	A	T	576.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr6	52142582	rs13191372	G	A	1701.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr6	52144081	rs2073036	T	C	682.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr6	52147692	rs2307322	T	A	1565.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr6	52288680	.	G	GT	59.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.792;ClippingRankSum=0.000;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.98;ReadPosRankSum=-0.336;SOR=0.517;set=HC	GT:AD:AF:DP	0/1:49,12:0.20:61
chr6	52303399	rs9349626	A	G	4846.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr6	52334371	rs62407897	T	C	576.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr6	52370775	rs45523335	G	A	1364.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr6	52387719	rs17664241	T	C	3875.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:2,138:0.99:140
chr6	52541811	rs13211066	G	A	4684.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:2,172:0.99:174
chr6	52546789	rs2281484	C	T	1747.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr6	52617731	rs2180314	C	G	9546.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	1/1:0,349:1.00:349
chr6	52622814	rs2254050	C	T	1624.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr6	52657552	rs4715326	C	T	2115.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr6	52661253	rs70977384	CTATATATATATATATATATA	C	285.74	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.82;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr6	52662263	rs2397106	C	T	3378.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr6	52697576	rs4715344	C	T	1955.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr6	52697825	rs4715345	A	C	7604.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.74;QD=43.46;SOR=1.205;set=HC	GT:AD:AF:DP	1/1:0,175:1.00:175
chr6	52697834	rs4715346	C	A	7338.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.64;QD=45.02;SOR=1.324;set=HC	GT:AD:AF:DP	1/1:0,163:1.00:163
chr6	52701143	rs2397118	C	T	3152.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr6	52702324	rs4715350	T	C	10953.77	.	AC=2;AF=1.00;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	1/1:0,407:1.00:407
chr6	52849481	.	CT	C	59.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.222;ClippingRankSum=0.000;DP=53;ExcessHet=3.0103;FS=1.917;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.81;ReadPosRankSum=0.153;SOR=1.130;set=HC	GT:AD:AF:DP	0/1:22,11:0.33:33
chr6	52878637	rs2297211	T	C	2674.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr6	52878654	rs33936662	C	T	2805.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr6	52958667	.	G	GT	92.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.440;ClippingRankSum=0.000;DP=88;ExcessHet=3.0103;FS=8.359;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.10;ReadPosRankSum=1.653;SOR=1.911;set=HC	GT:AD:AF:DP	0/1:65,19:0.23:84
chr6	52962989	rs114683383	G	A	2918.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr6	52993002	rs13200319	G	A	2855.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr6	52998788	rs2816346	G	A	1230.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr6	52998834	rs2816345	C	T	2401.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr6	52998856	rs2518573	T	G	3779.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr6	53134104	rs3830806	C	CACAG	5004.73	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr6	53140928	rs2294864	T	A	1179.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr6	53160344	rs79425751	C	T	4410.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:2,164:0.99:166
chr6	53160383	rs3736732	G	T	7414.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr6	53363809	.	G	GT	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.799;ClippingRankSum=0.000;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.83;MQRankSum=3.301;QD=1.19;ReadPosRankSum=-0.687;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:23,7:0.23:30
chr6	53365019	rs661346	G	C	6224.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr6	53516876	rs6928338	T	G	7322.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr6	53519062	rs10948758	A	G	11870.77	.	AC=2;AF=1.00;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	1/1:3,422:0.99:425
chr6	53519605	rs3799260	C	T	3385.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr6	53519857	rs12210809	G	A	7100.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr6	53520088	rs2038939	T	C	2575.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr6	53520124	rs2038940	A	G	1258.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.97;SOR=3.556;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr6	53707098	rs4286781	C	T	3574.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr6	53764829	rs71558840	T	G	925.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.04;ReadPosRankSum=0.000;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:2,40:0.95:42
chr6	53847528	rs9370250	G	A	2607.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr6	53847672	rs9370251	A	G	4363.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr6	54002231	rs2754779	A	C	10202.77	.	AC=2;AF=1.00;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	1/1:1,370:1.00:371
chr6	54003184	rs2754780	A	G	531.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr6	54013765	rs2145755	A	G	2893.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr6	54054686	rs6934690	T	A	1605.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr6	54067088	rs67016420	AT	A	2523.73	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.42;QD=35.55;SOR=2.082;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr6	54079968	rs11757700	G	A	1331.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr6	54095423	rs816384	T	C	2633.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:2,89:0.98:91
chr6	54191970	rs1848440	T	A	4250.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:2,164:0.99:166
chr6	54734941	rs7765721	C	A	2259.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr6	54735122	rs1472679	A	G	9839.77	.	AC=2;AF=1.00;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	1/1:2,360:0.99:362
chr6	54791345	.	G	GT	33	.	AC=1;AF=0.500;AN=2;BRF=0.53;FR=0.5000;HP=11;HapScore=2;MGOF=0;MMLQ=23;MQ=59.24;NF=0;NR=4;PP=33;QD=11.25;SC=TAAGAATTCTGTTTTTTTTTT;SbPval=1.0;Source=Platypus;TC=13;TCF=0;TCR=13;TR=4;WE=54791353;WS=54791335;set=Platypus	GT:AD:AF:DP	0/1:9,4:0.31:13
chr6	55113411	rs3122169	C	A	2221.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr6	55142337	rs2653349	A	G	2258.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr6	55196575	rs116111965	G	C	2396.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:2,93:0.98:95
chr6	55198696	rs116685319	T	C	1995.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:2,76:0.97:78
chr6	55214895	rs147652095	G	A	1172.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr6	55214932	rs115053739	G	T	1133.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr6	55215067	rs142223364	T	C	1680.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr6	55215079	rs1032767	G	A	1546.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr6	55216344	rs146300118	A	G	7417.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:2,271:0.99:273
chr6	55216461	rs139761685	A	T	1372.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:1,48:0.98:49
chr6	55264362	rs6936510	T	C	966.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr6	55266625	rs9370418	T	C	2867.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr6	55266722	rs12529201	C	T	1402.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.51;SOR=1.314;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr6	55381262	rs6459082	G	A	2042.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr6	55406399	rs9367638	C	T	286.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr6	55428658	rs4398737	A	C	1536.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr6	55620251	rs3756990	C	T	458.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr6	55739711	rs200061411	T	TA	143.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.353;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.000;QD=1.21;ReadPosRankSum=0.523;SOR=0.778;set=HC	GT:AD:AF:DP	0/1:89,30:0.25:119
chr6	55929347	rs2235735	T	C	3469.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:2,134:0.99:136
chr6	55935629	rs41271340	A	G	775.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:1,30:0.97:31
chr6	55966418	rs4379279	A	G	1966.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr6	56006843	rs2076473	T	C	189.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr6	56021870	rs111577315	T	TAAA	556.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=29.30;SOR=2.494;set=HC	GT:AD:AF:DP	1/1:2,17:0.89:19
chr6	56044578	rs2038149	T	C	8830.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:0,328:1.00:328
chr6	56045043	rs2038150	C	A	477.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr6	56365814	rs4283892	A	G	3306.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr6	56374754	rs9296849	C	A	896.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr6	56381912	rs4715626	G	A	3965.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr6	56394173	rs9357922	T	C	1449.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr6	56395051	rs6939305	C	A	1374.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr6	56417282	rs4715630	C	T	8044.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr6	56417545	rs4715631	T	C	9899.77	.	AC=2;AF=1.00;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	1/1:0,354:1.00:354
chr6	56481378	.	T	C	11711.77	.	AC=2;AF=1.00;AN=2;DP=432;set=Intersection	GT:AD:AF:DP	1/1:3,425:0.99:428
chr6	56818706	rs986245	T	C	1850.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr6	56873069	rs6925819	T	C	6130.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr6	56911574	rs9382680	A	G	468.79	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:1,18:0.95:19
chr6	56917538	rs6926980	G	A	2356.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr6	56919443	rs61740375	A	G	1475.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:1,59:0.98:60
chr6	56998023	rs3757296	A	G	2883.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr6	57006933	rs2273921	T	C	3868.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:1,149:0.99:150
chr6	57012930	rs3734738	C	T	4325.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr6	57055354	rs1040461	C	T	6319.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:4,236:0.98:240
chr6	57061486	.	G	T	2008.77	.	AC=2;AF=1.00;AN=2;DP=76;set=Intersection	GT:AD:AF:DP	1/1:1,74:0.99:75
chr6	57191021	rs11381745	A	AG	211.77	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr6	57244672	rs5011404	G	A	287.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:27,16:0.37:43
chr6	57244780	rs5011403	G	A	807.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:85,45:0.35:130
chr6	57244830	rs5011402	T	A	765.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:61,41:0.40:102
chr6	57244893	rs5011401	T	C	103.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:19,6:0.24:25
chr6	57246708	rs6913779	G	T	1097.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:45,41:0.48:86
chr6	57246773	rs113849959	T	TAGG	4653.73	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:111,117:0.51:228
chr6	57246785	rs62415470	A	C	5035.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:123,135:0.52:258
chr6	57246815	rs6936571	T	C	4246.77	.	AC=1;AF=0.500;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	0/1:197,193:0.49:390
chr6	57246884	rs6913546	A	G	5262.77	.	AC=1;AF=0.500;AN=2;DB;DP=562;set=Intersection	GT:AD:AF:DP	0/1:302,259:0.46:561
chr6	57246969	rs4256440	G	A	2929.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:169,133:0.44:302
chr6	57246982	rs4585567	G	T	2268.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:132,103:0.44:235
chr6	57247022	rs4382263	C	T	1233.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:57,48:0.46:105
chr6	57254789	rs2397264	A	G	1544.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:77,77:0.50:154
chr6	57254811	rs941685	A	G	6132.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr6	57254839	rs2397265	T	C	3467.77	.	AC=1;AF=0.500;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	0/1:199,170:0.46:369
chr6	57254927	rs2397266	A	G	4381.77	.	AC=1;AF=0.500;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	0/1:239,176:0.42:415
chr6	57254939	rs4994089	G	T	2973.77	.	AC=1;AF=0.500;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	0/1:231,156:0.40:387
chr6	57254950	rs5876554	A	AT	5088.73	.	AC=1;AF=0.500;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	0/1:193,137:0.42:330
chr6	57254955	rs2894842	G	A	5040.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:186,133:0.42:319
chr6	57254986	rs2397267	G	A	2577.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:114,76:0.40:190
chr6	57255001	rs2894843	C	A	1904.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:93,63:0.40:156
chr6	57255015	rs2894844	G	C	1579.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:73,43:0.37:116
chr6	57255016	rs5876555	A	AC	1548.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:72,43:0.37:115
chr6	57255032	rs7769711	C	G	1113.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:48,30:0.38:78
chr6	57372104	rs2024986	T	C	122.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.159;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.01;ReadPosRankSum=0.142;SOR=0.240;set=HC	GT:AD:AF:DP	0/1:51,10:0.16:61
chr6	57372116	rs9382768	T	C	1462.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.903;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.32;ReadPosRankSum=-0.058;SOR=0.889;set=HC	GT:AD:AF:DP	0/1:23,49:0.68:72
chr6	57372116	.	TGTAATGTGTC	CGTAATGTGTC,CGTAATGTGTG	266	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.31;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=18;MMLQ=23;MQ=59.68;NF=42,11;NR=5,2;PP=266,117;QD=6.399387501;SC=GCTTTGATCATGTAATGTGTC;SbPval=0.62;Source=Platypus;TC=70;TCF=62;TCR=8;TR=47,13;WE=57372134;WS=57372099;set=Platypus	GT:AF:DP	0/1:0.67:70
chr6	57372126	rs9396314	C	G	228.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.764;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=1.386;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.51;ReadPosRankSum=-1.104;SOR=1.001;set=HC	GT:AD:AF:DP	0/1:75,16:0.18:91
chr6	57372199	rs9382769	T	C	7013.77	.	AC=1;AF=0.500;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	0/1:111,291:0.72:402
chr6	57372361	rs9382770	C	A	13173.77	.	AC=1;AF=0.500;AN=2;DB;DP=461;MQ=60.02;set=Intersection	GT:AD:AF:DP	0/1:112,341:0.75:453
chr6	57372365	rs9396315	A	G	2775.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.810;ClippingRankSum=0.000;DB;DP=442;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=-0.542;QD=6.40;ReadPosRankSum=-0.877;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:334,100:0.23:434
chr6	57372374	rs68090917	CT	C	8050.73	.	AC=1;AF=0.500;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	0/1:192,209:0.52:401
chr6	57372436	rs9382771	G	C	4612.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.339;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.48;ReadPosRankSum=-1.540;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:55,126:0.70:181
chr6	57372436	.	GC	CT	1467	.	AC=1;AF=0.500;AN=2;BRF=0.4;FR=0.5000;HP=3;HapScore=2;MGOF=61;MMLQ=28;MQ=60.0;NF=16;NR=52;PP=1467;QD=22.3598216892;SC=TGGTGAAACCGCTTCAATTAC;SbPval=0.48;Source=Platypus;TC=146;TCF=33;TCR=113;TR=68;WE=57372445;WS=57372426;set=Platypus	GT:AD:AF:DP	1/0:78,68:0.47:146
chr6	57372437	rs79221898	C	T	2323.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-4.978;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.43;ReadPosRankSum=-0.672;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:76,97:0.56:173
chr6	57372456	rs35141035	AT	A	1519.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.484;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.35;ReadPosRankSum=0.420;SOR=0.825;set=HC	GT:AD:AF:DP	0/1:52,47:0.47:99
chr6	57372480	rs79601039	A	G	1346.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:35,35:0.50:70
chr6	57372502	rs9349872	G	A	1185.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.932;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=6.289;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.23;ReadPosRankSum=1.550;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:17,30:0.64:47
chr6	57372510	rs77697887	T	G	728.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.680;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=2.162;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.35;ReadPosRankSum=-0.400;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:22,20:0.48:42
chr6	57372514	rs77868044	T	C	700.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.165;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.52;ReadPosRankSum=-0.435;SOR=1.109;set=HC	GT:AD:AF:DP	0/1:21,19:0.47:40
chr6	57392963	rs927193	T	C	106.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr6	57393029	rs77090024	T	A	592.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.947;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=5.871;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.96;ReadPosRankSum=0.919;SOR=0.162;set=HC	GT:AD:AF:DP	0/1:17,16:0.48:33
chr6	57393034	rs75127850	G	T	619.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.827;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=1.430;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.75;ReadPosRankSum=1.281;SOR=0.346;set=HC	GT:AD:AF:DP	0/1:20,17:0.46:37
chr6	57393040	rs74756458	A	T	688.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.169;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=1.269;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.02;ReadPosRankSum=1.688;SOR=0.477;set=HC	GT:AD:AF:DP	0/1:25,18:0.42:43
chr6	57393054	rs75725892	G	A	743.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:40,21:0.34:61
chr6	57393074	rs73752376	A	G	1071.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:44,28:0.39:72
chr6	57393092	rs73752377	T	A	971.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:61,43:0.41:104
chr6	57393125	rs927192	A	G	2641.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:47,116:0.71:163
chr6	57393160	rs76686926	G	A	1306.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:91,69:0.43:160
chr6	57393199	rs2397502	C	A	481.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:83,32:0.28:115
chr6	57393216	rs2397503	G	T	3061.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.028;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=3.070;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.16;ReadPosRankSum=-0.026;SOR=0.394;set=HC	GT:AD:AF:DP	0/1:26,79:0.75:105
chr6	57393222	rs111989160	A	G	1530.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.941;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.62;ReadPosRankSum=0.551;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:54,44:0.45:98
chr6	57393228	rs112156516	G	A	1449.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.121;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.829;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.93;ReadPosRankSum=1.538;SOR=0.840;set=HC	GT:AD:AF:DP	0/1:53,38:0.42:91
chr6	57393278	rs75909609	T	C	384.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:20,16:0.44:36
chr6	57393329	rs76564922	G	T	107.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.032;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.34;ReadPosRankSum=-1.235;SOR=0.193;set=HC	GT:AD:AF:DP	0/1:12,5:0.29:17
chr6	57398047	rs76081480	A	C	1034.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:56,46:0.45:102
chr6	57398081	rs7753294	T	G	2006.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;MQ=60.06;set=Intersection	GT:AD:AF:DP	0/1:95,88:0.48:183
chr6	57398117	.	T	TA	1967	.	AC=1;AF=0.500;AN=2;BRF=0.46;FR=0.5000;HP=1;HapScore=1;MGOF=61;MMLQ=27;MQ=60.05;NF=70;NR=63;PP=1967;QD=15.1127819549;SC=AAAACTCTACTGTTTTTTCTT;SbPval=0.48;Source=Platypus;TC=231;TCF=124;TCR=107;TR=133;WE=57398126;WS=57398107;set=Platypus	GT:AD:AF:DP	1/0:98,133:0.58:231
chr6	57398154	rs80081867	T	C	14476.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.501;ClippingRankSum=0.000;DB;DP=591;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.139;QD=24.66;ReadPosRankSum=-1.377;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:230,357:0.61:587
chr6	57398157	rs9476080	A	G	15234.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.863;ClippingRankSum=0.000;DB;DP=620;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=1.149;QD=24.73;ReadPosRankSum=-0.491;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:244,372:0.60:616
chr6	57398163	rs9476081	A	G	16041.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.828;ClippingRankSum=0.000;DB;DP=664;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=1.143;QD=24.31;ReadPosRankSum=0.024;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:260,400:0.61:660
chr6	57398186	rs147954160	G	GA	10290.73	.	AC=1;AF=0.500;AN=2;DB;DP=781;set=Intersection	GT:AD:AF:DP	0/1:405,358:0.47:763
chr6	57398201	rs62398997	T	C	18224.77	.	AC=1;AF=0.500;AN=2;DB;DP=811;set=Intersection	GT:AD:AF:DP	0/1:306,499:0.62:805
chr6	57398207	rs71214816	G	T	2302.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.214;ClippingRankSum=0.000;DB;DP=808;ExcessHet=3.0103;FS=0.635;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=3.145;QD=2.89;ReadPosRankSum=-1.131;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:622,175:0.22:797
chr6	57398226	rs77436138	T	A	14075.77	.	AC=1;AF=0.500;AN=2;DB;DP=755;set=Intersection	GT:AD:AF:DP	0/1:288,390:0.58:678
chr6	57398264	rs62398998	A	G	13597.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.544;ClippingRankSum=0.000;DB;DP=631;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.441;QD=22.78;ReadPosRankSum=-2.004;SOR=0.642;set=HC	GT:AD:AF:DP	0/1:203,394:0.66:597
chr6	57398270	rs62398999	C	T	9279.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.584;ClippingRankSum=0.000;DB;DP=614;ExcessHet=3.0103;FS=1.804;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.604;QD=16.00;ReadPosRankSum=-1.145;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:226,354:0.61:580
chr6	57398335	rs4715745	A	T	3929.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:87,167:0.66:254
chr6	57398385	rs11455120	A	AT	275.73	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:68,19:0.22:87
chr6	57398395	rs78658694	A	T	147.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.774;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=1.683;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.76;ReadPosRankSum=-0.653;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:68,16:0.19:84
chr6	57398412	rs6937166	A	G	566.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:35,25:0.42:60
chr6	57415121	rs7741368	G	A	4576.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:145,120:0.45:265
chr6	57415141	rs11346545	TA	T	5224.73	.	AC=1;AF=0.500;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	0/1:202,160:0.44:362
chr6	57415161	rs493737	T	G	10657.77	.	AC=1;AF=0.500;AN=2;DB;DP=478;set=Intersection	GT:AD:AF:DP	0/1:130,341:0.72:471
chr6	57415173	rs496135	G	A	5305.77	.	AC=1;AF=0.500;AN=2;DB;DP=557;set=Intersection	GT:AD:AF:DP	0/1:289,261:0.47:550
chr6	57415223	rs7741129	A	T	11991.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.675;ClippingRankSum=0.000;DB;DP=689;ExcessHet=3.0103;FS=0.519;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=2.977;QD=17.58;ReadPosRankSum=-0.769;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:365,317:0.46:682
chr6	57415231	rs7761558	T	C	11966.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.405;ClippingRankSum=0.000;DB;DP=696;ExcessHet=3.0103;FS=1.091;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=2.938;QD=17.37;ReadPosRankSum=-1.132;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:365,324:0.47:689
chr6	57415309	rs7741689	G	C	6319.77	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:72,263:0.79:335
chr6	57415349	rs11412269	G	GA	3527.73	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:35,128:0.79:163
chr6	57415374	rs376758933	T	C	621.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:75,29:0.28:104
chr6	57415403	rs11412270	T	TA	1104.73	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:14,45:0.76:59
chr6	57415420	rs9349880	T	C	322.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.828;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.02;ReadPosRankSum=0.227;SOR=0.188;set=HC	GT:AD:AF:DP	0/1:32,14:0.30:46
chr6	57415425	rs7741460	A	T	1070.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.525;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.49;ReadPosRankSum=0.490;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:10,32:0.76:42
chr6	57433425	rs2397541	C	T	709.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:18,27:0.60:45
chr6	57433455	rs2151625	C	G	295.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:58,22:0.28:80
chr6	57433501	rs201029322	AAAAAAAG	A	1011.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.104;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.826;QD=7.18;ReadPosRankSum=2.709;SOR=0.764;set=HC	GT:AD:AF:DP	0/1:108,33:0.23:141
chr6	57433525	rs518931	T	G	2266.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;MQ=60.07;set=Intersection	GT:AD:AF:DP	0/1:81,62:0.43:143
chr6	57433544	rs562762	G	A	2414.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;MQ=60.07;set=Intersection	GT:AD:AF:DP	0/1:80,68:0.46:148
chr6	57433616	rs518037	T	C	1291.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;MQ=60.14;set=Intersection	GT:AD:AF:DP	0/1:20,54:0.73:74
chr6	57433669	rs4464799	A	G	175.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:21,9:0.30:30
chr6	57457703	rs111977760	A	AG	679.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:12,18:0.60:30
chr6	57457704	rs5008381	A	T	688.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:13,18:0.58:31
chr6	57457737	rs9476161	A	G	88.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.127;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=1.438;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.48;ReadPosRankSum=0.784;SOR=0.380;set=HC	GT:AD:AF:DP	0/1:50,10:0.17:60
chr6	57457744	rs4110758	A	G	737.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:37,31:0.46:68
chr6	57457779	rs4110759	G	C	1922.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:42,80:0.66:122
chr6	57457843	rs4110760	T	G	1429.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:89,74:0.45:163
chr6	57457947	rs2397945	A	C	1275.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:76,58:0.43:134
chr6	57457958	rs2397562	G	C	617.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.879;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.83;ReadPosRankSum=1.715;SOR=0.750;set=HC	GT:AD:AF:DP	0/1:91,37:0.29:128
chr6	57457960	rs2093718	A	G	766.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.024;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.18;ReadPosRankSum=-1.033;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:87,37:0.30:124
chr6	57457973	rs74595165	C	T	1347.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.705;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.761;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.71;ReadPosRankSum=-0.746;SOR=0.574;set=HC	GT:AD:AF:DP	0/1:64,42:0.40:106
chr6	57457973	.	CT	TG	918	.	AC=1;AF=0.500;AN=2;BRF=0.27;FR=0.5000;HP=3;HapScore=3;MGOF=37;MMLQ=24;MQ=59.52;NF=15;NR=22;PP=918;QD=26.2558885098;SC=ATGGCGAGATCTTGGAGAAAA;SbPval=0.41;Source=Platypus;TC=82;TCF=30;TCR=52;TR=37;WE=57457982;WS=57457937;set=Platypus	GT:AD:AF:DP	0/1:45,37:0.45:82
chr6	57457974	rs4598061	T	G	2530.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.025;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=4.073;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.88;ReadPosRankSum=-2.537;SOR=1.176;set=HC	GT:AD:AF:DP	0/1:33,73:0.69:106
chr6	57457995	rs4501418	G	C	2054.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.773;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=4.764;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.46;ReadPosRankSum=-2.048;SOR=1.277;set=HC	GT:AD:AF:DP	0/1:27,57:0.68:84
chr6	57458001	rs78499845	A	G	861.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.105;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.77;ReadPosRankSum=-1.334;SOR=0.623;set=HC	GT:AD:AF:DP	0/1:47,33:0.41:80
chr6	57458006	rs4120410	C	T	98.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.322;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.28;ReadPosRankSum=1.488;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:65,12:0.16:77
chr6	57458044	rs4351265	A	C	161.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:34,12:0.26:46
chr6	57467084	rs9885913	A	G	7126.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.616;ClippingRankSum=0.000;DB;DP=373;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.31;ReadPosRankSum=0.527;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:186,183:0.50:369
chr6	57467093	rs9885916	A	G	7373.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.587;ClippingRankSum=0.000;DB;DP=417;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.85;ReadPosRankSum=1.017;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:212,201:0.49:413
chr6	57467100	rs4535533	G	C	11880.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.536;ClippingRankSum=0.000;DB;DP=471;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.50;ReadPosRankSum=2.543;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:125,341:0.73:466
chr6	57467107	rs9885751	C	T	5089.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.260;ClippingRankSum=0.000;DB;DP=513;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.06;ReadPosRankSum=2.610;SOR=0.731;set=HC	GT:AD:AF:DP	0/1:277,229:0.45:506
chr6	57467175	rs4406234	A	G	4068.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.939;ClippingRankSum=0.000;DB;DP=981;ExcessHet=3.0103;FS=0.593;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.19;ReadPosRankSum=1.306;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:713,258:0.27:971
chr6	57467279	rs6459263	T	C	11227.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.208;ClippingRankSum=0.000;DB;DP=626;ExcessHet=3.0103;FS=1.792;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.20;ReadPosRankSum=-0.826;SOR=0.546;set=HC	GT:AD:AF:DP	0/1:316,301:0.49:617
chr6	57467282	rs6459264	T	C	11101.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.005;ClippingRankSum=0.000;DB;DP=588;ExcessHet=3.0103;FS=1.800;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.17;ReadPosRankSum=-0.023;SOR=0.572;set=HC	GT:AD:AF:DP	0/1:300,279:0.48:579
chr6	57467303	rs1022846	A	G	11906.77	.	AC=2;AF=1.00;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	1/1:0,418:1.00:418
chr6	57467317	rs4637646	G	T	2717.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.795;ClippingRankSum=0.000;DB;DP=350;ExcessHet=3.0103;FS=4.712;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.85;ReadPosRankSum=0.368;SOR=1.013;set=HC	GT:AD:AF:DP	0/1:258,88:0.25:346
chr6	57467323	rs4424069	G	C	2645.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.006;ClippingRankSum=0.000;DB;DP=311;ExcessHet=3.0103;FS=4.292;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.59;ReadPosRankSum=0.861;SOR=1.000;set=HC	GT:AD:AF:DP	0/1:231,77:0.25:308
chr6	57472212	rs9296899	T	A	1924.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:20,68:0.77:88
chr6	57472255	rs9296900	C	T	3806.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:46,142:0.76:188
chr6	57472299	rs9396358	A	G	1251.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.421;ClippingRankSum=0.000;DB;DP=420;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.99;ReadPosRankSum=1.988;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:329,89:0.21:418
chr6	57472315	rs9296901	A	G	10209.77	.	AC=1;AF=0.500;AN=2;DB;DP=511;set=Intersection	GT:AD:AF:DP	0/1:157,351:0.69:508
chr6	57472316	rs9382818	G	A	1698.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.099;ClippingRankSum=0.000;DB;DP=518;ExcessHet=3.0103;FS=1.357;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.30;ReadPosRankSum=0.205;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:397,118:0.23:515
chr6	57472344	rs111230027	A	AT	5392.73	.	AC=1;AF=0.500;AN=2;DB;DP=659;set=Intersection	GT:AD:AF:DP	0/1:365,284:0.44:649
chr6	57472476	rs9382819	T	C	1693.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.925;ClippingRankSum=0.000;DB;DP=412;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.21;ReadPosRankSum=0.570;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:290,112:0.28:402
chr6	57472488	rs9382820	C	T	1626.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.289;ClippingRankSum=0.000;DB;DP=358;ExcessHet=3.0103;FS=2.747;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.62;ReadPosRankSum=0.401;SOR=0.858;set=HC	GT:AD:AF:DP	0/1:254,98:0.28:352
chr6	57472495	rs62400219	C	G	2752.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:178,130:0.42:308
chr6	57472533	rs9367767	T	C	4606.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.976;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=2.601;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.50;ReadPosRankSum=1.578;SOR=1.052;set=HC	GT:AD:AF:DP	0/1:55,133:0.71:188
chr6	57472534	rs74369127	T	C	1757.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.095;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.55;ReadPosRankSum=1.592;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:109,75:0.41:184
chr6	57498894	rs3846934	G	A	1948.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.935;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=1.056;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.66;ReadPosRankSum=1.205;SOR=0.492;set=HC	GT:AD:AF:DP	0/1:17,69:0.80:86
chr6	57498895	.	C	T	304.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.152;ClippingRankSum=0.000;DP=88;ExcessHet=3.0103;FS=6.557;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.54;ReadPosRankSum=0.104;SOR=0.416;set=HC	GT:AD:AF:DP	0/1:63,23:0.27:86
chr6	57498944	rs3846935	G	C	2647.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:32,112:0.78:144
chr6	57499035	rs61753605	T	C	763.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:106,47:0.31:153
chr6	57499077	rs201834459	TG	T	648.73	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:65,33:0.34:98
chr6	57499171	rs3846936	T	C	311.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:17,12:0.41:29
chr6	57499188	rs2151627	C	T	204.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:12,10:0.45:22
chr6	57499196	rs11423601	C	CA	182.73	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:11,9:0.45:20
chr6	57512340	rs4364484	C	T	1002.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:16,38:0.70:54
chr6	57512352	rs5001077	A	T	956.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:37,38:0.51:75
chr6	57512439	rs4294006	T	C	1412.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.699;ClippingRankSum=0.000;DB;DP=314;ExcessHet=3.0103;FS=3.502;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.56;ReadPosRankSum=0.784;SOR=0.455;set=HC	GT:AD:AF:DP	0/1:230,80:0.26:310
chr6	57512476	rs4307164	G	A	9146.77	.	AC=1;AF=0.500;AN=2;DB;DP=526;set=Intersection	GT:AD:AF:DP	0/1:154,368:0.70:522
chr6	57512510	rs4294007	T	G	27934.77	.	AC=2;AF=1.00;AN=2;DB;DP=781;set=Intersection	GT:AD:AF:DP	1/1:1,773:1.00:774
chr6	57512529	rs5001076	C	A	9992.77	.	AC=1;AF=0.500;AN=2;DB;DP=1004;set=Intersection	GT:AD:AF:DP	0/1:513,477:0.48:990
chr6	57512565	rs4294008	T	C	23608.77	.	AC=1;AF=0.500;AN=2;DB;DP=1447;set=Intersection	GT:AD:AF:DP	0/1:375,1040:0.73:1415
chr6	57512678	rs4398719	G	A	17475.77	.	AC=1;AF=0.500;AN=2;DB;DP=1016;set=Intersection	GT:AD:AF:DP	0/1:251,745:0.75:996
chr6	57512711	rs5001484	G	A,C	11046.77	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=2.740;ClippingRankSum=0.000;DB;DP=598;ExcessHet=3.0103;FS=0.670;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=18.63;ReadPosRankSum=0.751;SOR=0.818;set=HC	GT:AD:AF:DP	1/2:147,161,285:0.27,0.48:593
chr6	57512711	.	GTAACCCT	ATAACCCT,CTAACCCA	2944	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.43;FR=0.5000,0.5000;HP=5;HapScore=1;MGOF=39;MMLQ=28;MQ=60.0;NF=33,48;NR=94,167;PP=315,2944;QD=2.7541040358;SC=AGGCAGTTTTGTAACCCTTTT;SbPval=0.57;Source=Platypus;TC=490;TCF=132;TCR=358;TR=127,215;WE=57512726;WS=57512701;set=Platypus	GT:AF:DP	0/1:0.26:490
chr6	57512718	rs5001483	T	A	10353.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.806;ClippingRankSum=0.000;DB;DP=538;ExcessHet=3.0103;FS=1.248;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.43;ReadPosRankSum=0.768;SOR=0.823;set=HC	GT:AD:AF:DP	0/1:271,262:0.49:533
chr6	57512775	rs7773110	T	G	5134.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.034;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=4.875;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.01;ReadPosRankSum=-0.375;SOR=1.391;set=HC	GT:AD:AF:DP	0/1:49,128:0.72:177
chr6	57512779	rs76296076	G	T	5101.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.925;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=4.834;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.32;ReadPosRankSum=-0.076;SOR=1.351;set=HC	GT:AD:AF:DP	0/1:49,125:0.72:174
chr6	57512787	.	T	TCACCAAGGC	4478.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.009;ClippingRankSum=0.000;DP=151;ExcessHet=3.0103;FS=5.153;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=30.68;ReadPosRankSum=1.404;SOR=1.361;set=HC	GT:AD:AF:DP	0/1:44,102:0.70:146
chr6	57512788	.	T	TTA	4355.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=7.084;ClippingRankSum=0.000;DP=133;ExcessHet=3.0103;FS=5.287;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=34.03;ReadPosRankSum=-2.158;SOR=1.382;set=HC	GT:AD:AF:DP	0/1:43,85:0.66:128
chr6	57512792	rs372064495	T	C	3204.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.507;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=2.217;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.39;ReadPosRankSum=-2.525;SOR=1.138;set=HC	GT:AD:AF:DP	0/1:41,76:0.65:117
chr6	62442604	rs10484690	A	G	8826.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:4,350:0.99:354
chr6	62526443	rs1005815	C	T	448.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr6	62757987	rs9346001	C	T	981.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr6	62887031	rs9346218	C	T	300.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr6	62887099	rs6921170	C	T	1217.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr6	63921361	rs4710420	A	G	171.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr6	63921442	rs76273486	G	A	1292.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr6	63921456	rs79100944	G	A	1546.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr6	64289938	rs56188808	AT	A	196.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.856;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.797;QD=1.51;ReadPosRankSum=-0.941;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:89,41:0.32:130
chr6	64410482	.	C	CT	33	.	AC=1;AF=0.500;AN=2;BRF=0.11;FR=0.5000;HP=12;HapScore=2;MGOF=3;MMLQ=21;MQ=60.0;NF=0;NR=4;PP=33;QD=11.25;SC=TTACATGCTTCTTTTTTTTTT;SbPval=1.0;Source=Platypus;TC=14;TCF=1;TCR=13;TR=4;WE=64410490;WS=64410472;set=Platypus	GT:AD:AF:DP	0/1:10,4:0.29:14
chr6	65016977	rs35395170	TGA	T	1214.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=33.74;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr6	65098768	rs587278	A	G	3596.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr6	65300516	rs57312007	T	G	2146.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr6	65301504	rs624851	A	G	6143.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr6	65302915	rs11331907	GA	G	496.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr6	65596759	rs7743515	G	A	1340.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr6	65611952	rs59518422	T	TATTA	1884.73	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr6	65622463	rs9294631	A	G	7389.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr6	65622662	rs9445437	G	C	1836.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr6	65655883	rs9453115	C	T	488.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr6	66005857	rs17411795	T	A	9351.77	.	AC=2;AF=1.00;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	1/1:0,354:1.00:354
chr6	66013183	.	G	A	456.77	.	AC=2;AF=1.00;AN=2;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.71;QD=26.87;SOR=2.712;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr6	66045077	rs1502965	C	T	1706.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr6	66045118	rs1502964	T	C	847.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr6	66053835	rs1502963	T	G	79.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr6	66063513	rs1936439	G	A	4704.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr6	69666183	rs143618979	T	TTA	557.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:1,20:0.95:21
chr6	69666520	rs7757138	T	C	838.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr6	69666684	rs1932618	A	G	1570.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr6	69666747	rs3215965	GA	G	449.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr6	69724069	rs1336655	G	A	1939.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr6	69728522	rs2785573	C	T	135.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.18;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr6	69759148	rs618372	A	T	1338.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr6	69772809	rs13207626	T	C	3908.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr6	69942506	rs701655	G	A	2420.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr6	69943418	rs3215840	A	AG	4575.73	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr6	69944886	rs779461	A	G	3916.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:2,142:0.99:144
chr6	70042994	rs113046536	AATTTTGTTATTG	A	4204.73	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:2,151:0.99:153
chr6	70043009	rs74971437	G	C	4213.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:2,151:0.99:153
chr6	70386320	rs3214021	C	T	5365.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:1,199:0.99:200
chr6	70407465	rs12648	A	T	2322.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr6	70411157	rs2445969	G	A	40.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr6	70423739	rs2305837	A	G	658.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr6	70447993	rs45559535	G	T	809.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr6	70448033	rs12661224	C	T	397.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr6	70490511	rs9346353	A	G	156.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr6	70490528	rs9346354	A	G	152.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr6	70500451	rs2305838	C	A	3334.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr6	70500463	rs2305839	T	G	2803.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr6	70589630	rs6919210	G	C	1999.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr6	70609082	rs9446168	G	A	211.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.26;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr6	70610283	rs9454910	C	T	284.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr6	70639637	rs11421187	T	TA	1777.73	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:8,89:0.92:97
chr6	70672827	rs7742627	A	G	596.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr6	70733547	rs2273426	C	G	1447.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr6	70812087	rs181253508	C	T	4156.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:2,161:0.99:163
chr6	70812273	rs11759810	A	G	499.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr6	70852493	rs9342783	A	G	351.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr6	70852607	rs3831024	C	CT	1942.73	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:4,92:0.96:96
chr6	70852841	rs2296013	A	T	463.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr6	70854183	rs9364074	A	G	1766.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr6	70854208	rs58591338	CAG	C	3456.73	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr6	70854736	rs9454991	T	C	1405.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr6	70854924	rs3841703	A	AT	727.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr6	70856536	rs7762409	C	T	726.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr6	70861135	rs3818327	T	G	469.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr6	70866421	rs3736843	T	C	465.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr6	70866609	rs2229799	C	T	1897.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr6	70875976	rs802174	T	G	1328.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr6	70876046	rs802175	T	C	570.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr6	70878198	rs2296009	C	T	1024.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr6	70881783	rs3806050	C	G	2557.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr6	70890224	rs2273948	G	A	3877.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr6	70894914	rs2296004	A	G	1389.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr6	70909252	rs5877242	AT	A	442.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr6	70916888	rs1200576	A	C	2038.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr6	70917068	.	CTTT	C	185.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.501;ClippingRankSum=-0.000;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.74;MQRankSum=0.493;QD=12.38;ReadPosRankSum=-0.084;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:6,9:0.60:15
chr6	70926898	rs1200569	G	A	4181.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr6	70944257	rs6910140	T	C	6627.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr6	70944733	rs72923125	G	A	2976.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr6	70944825	rs72923127	C	T	866.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr6	70950281	rs71767894	AAT	A	322.73	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=32.27;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr6	70961833	rs1135056	T	C	1713.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr6	70962044	rs519068	A	G	2284.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr6	70963156	rs701690	T	G	6837.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:2,261:0.99:263
chr6	70963232	rs701689	A	G	4105.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:1,152:0.99:153
chr6	70963247	rs3806081	T	C	3434.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:1,114:0.99:115
chr6	70963279	rs701688	T	C	2096.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr6	70964264	rs72923190	C	T	3954.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.397;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.41;ReadPosRankSum=3.512;SOR=0.824;set=HC	GT:AD:AF:DP	1/1:2,160:0.99:162
chr6	70965125	rs633762	A	C	1164.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr6	70966421	rs58271754	CA	C	95.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.259;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=2.888;QD=0.46;ReadPosRankSum=-1.629;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:167,42:0.20:209
chr6	70970299	rs2024730	C	T	2096.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr6	70979125	rs551470	A	G	440.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr6	70979193	rs550675	C	T	1349.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr6	70980247	rs2296930	A	G	867.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr6	70991003	rs34962262	GA	G	454.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.848;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=1.373;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.89;ReadPosRankSum=1.798;SOR=0.488;set=HC	GT:AD:AF:DP	0/1:13,33:0.72:46
chr6	71137884	rs13202450	G	A	372.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr6	71137992	rs41265349	C	T	1700.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr6	71190577	rs2273210	A	G	2117.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr6	71232014	rs146416812	GTTTATA	G	1755.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr6	71236216	rs7740873	C	T	7793.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:1,289:1.00:290
chr6	71236451	rs373718582	TATACACACACACACACATAC	T	1034.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=65.68;QD=39.80;SOR=2.712;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr6	71243085	rs146023593	GTA	G	227.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr6	71243352	rs9283835	A	G	531.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr6	71247863	rs78525529	T	C	660.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr6	71269459	rs16869371	C	T	6926.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr6	71269632	rs16869373	G	A	1860.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr6	71276803	rs2293297	T	C	581.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr6	71289189	rs1048886	A	G	3309.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:2,135:0.99:137
chr6	71298533	rs13654	A	G	240.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr6	71378188	rs781984	A	G	495.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr6	71482975	rs1413353	G	A	860.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr6	71665473	rs9455275	A	G	2074.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.14;SOR=1.514;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr6	71665479	rs62420336	G	A	2105.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.87;SOR=1.562;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr6	71665986	rs1574490	G	A	2102.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:2,82:0.98:84
chr6	71666146	rs1320315	T	C	1029.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr6	72010963	rs9346458	G	A	3036.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr6	72836421	rs2463696	A	C	1516.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.35;QD=25.28;SOR=1.255;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr6	72858416	rs151080929	GTT	G,GT	3167.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.469;ClippingRankSum=0.000;DB;DP=199;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.22;MQRankSum=0.446;QD=20.31;ReadPosRankSum=-1.181;SOR=0.862;set=HC	GT:AD:AF:DP	1/2:8,116,32:0.74,0.21:156
chr6	72889472	rs2249021	A	G	8971.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:0,318:1.00:318
chr6	72892257	rs2463730	A	G	579.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr6	72945492	rs2807519	C	T	4879.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr6	72945603	rs138366781	A	ATTTTC	1132.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr6	72947774	rs2807525	C	T	247.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr6	72962352	rs9351902	A	G	698.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr6	72968609	rs6923891	C	T	1047.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:1,33:0.97:34
chr6	72984199	.	G	T	1471.77	.	AC=2;AF=1.00;AN=2;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr6	72984277	rs4504440	G	A	606.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr6	73108872	rs67994138	AAG	A	1379.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr6	73332040	rs3734212	C	G	694.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr6	73516397	rs9446758	A	G	430.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr6	73821239	rs2000205	T	C	3177.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr6	73830423	rs1891404	A	G	3320.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr6	74073531	rs561930	C	G	7309.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr6	74079024	rs496530	A	G	4474.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr6	74079041	rs497243	A	C	4676.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:1,170:0.99:171
chr6	74104557	rs558198	C	G	3870.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr6	74111524	rs60478350	CA	C	227.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.387;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=4.389;MLEAC=1;MLEAF=0.500;MQ=60.48;MQRankSum=1.348;QD=5.69;ReadPosRankSum=-0.027;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:13,27:0.68:40
chr6	74115935	rs57549301	C	CGG	881.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr6	74119084	rs4708053	T	C	2343.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr6	74125875	rs311686	A	G	5537.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr6	74125888	rs311685	A	G	5582.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr6	74126084	rs311684	C	T	233.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr6	74134849	rs311679	T	C	425.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr6	74135016	rs311678	C	T	2665.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr6	74155346	rs610913	G	T	981.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr6	74155491	rs2985419	T	C	783.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr6	74161503	rs9446904	A	G	5363.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:2,198:0.99:200
chr6	74161801	rs9352000	G	T	2220.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr6	74171467	rs1713862	C	G	1563.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr6	74189574	rs7766570	G	A	4129.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr6	74201826	.	CAAA	C	209.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.431;ClippingRankSum=-0.000;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.98;ReadPosRankSum=0.674;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:4,11:0.73:15
chr6	74228006	rs1874229	A	G	2634.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:3,106:0.97:109
chr6	74228049	rs1874230	A	G	1796.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:2,68:0.97:70
chr6	74229258	rs2073466	G	T	6174.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr6	74229405	rs4708060	C	A	1188.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr6	74310231	.	C	CT	123.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.353;ClippingRankSum=0.000;DP=58;ExcessHet=3.0103;FS=1.501;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.54;ReadPosRankSum=-0.975;SOR=0.323;set=HC	GT:AD:AF:DP	0/1:22,13:0.37:35
chr6	74432923	rs56093139	C	T	1419.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr6	74521947	rs2917862	C	T	4708.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:6,182:0.97:188
chr6	74528293	rs3005506	A	G	857.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr6	74530421	rs3005537	A	G	2989.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr6	74533192	rs2917887	T	G	2243.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:1,89:0.99:90
chr6	75795122	rs112607771	G	GCA,GCACA	2748.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=96;set=Intersection	GT:AF:DP	1/2:0.22,0.72:82
chr6	75796364	.	GTATATA	G,GTATA	488.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.431;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=25.72;ReadPosRankSum=-2.207;SOR=3.500;set=HC	GT:AD:AF:DP	1/2:2,7,10:0.37,0.53:19
chr6	75798722	rs672648	C	A	1230.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.258;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.97;MQRankSum=-0.526;QD=18.10;ReadPosRankSum=-0.471;SOR=0.675;set=HC	GT:AD:AF:DP	1/1:9,59:0.87:68
chr6	75811880	rs556674	G	A	1961.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr6	75830974	rs499018	G	C	4703.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:2,175:0.99:177
chr6	75833876	rs240722	C	A	3262.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr6	75841722	rs594012	A	T	4756.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr6	75843845	rs1332778	T	C	866.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr6	75844458	rs77425231	C	T	1434.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr6	75890933	rs34433354	T	TA	445.86	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.375;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.51;ReadPosRankSum=0.478;SOR=1.003;set=HC	GT:AD:AF:DP	0/1:5,28:0.85:33
chr6	75893457	rs36085827	TA	T	1076.73	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:4,59:0.94:63
chr6	75901292	rs743003	C	T	417.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr6	75904455	rs240433	A	T	1833.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr6	75950109	rs56897555	T	TA	632.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.238;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=0.925;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.867;QD=6.52;ReadPosRankSum=2.288;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:47,50:0.52:97
chr6	75951719	rs240419	A	C	590.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr6	75966269	rs418485	A	G	559.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr6	75968720	rs147523	G	A	1093.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:1,39:0.97:40
chr6	75977591	rs240395	T	A	903.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr6	76022082	rs9352202	A	G	9353.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.152;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=44.12;ReadPosRankSum=-1.059;SOR=0.763;set=HC	GT:AD:AF:DP	1/1:3,209:0.99:212
chr6	76022090	rs9343281	G	C	9880.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.398;ClippingRankSum=0.000;DB;DP=241;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=41.34;ReadPosRankSum=-1.099;SOR=0.714;set=HC	GT:AD:AF:DP	1/1:3,236:0.99:239
chr6	76063133	rs6913979	A	G	279.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr6	76124792	rs2808201	G	A	1013.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr6	76138146	rs5877455	C	CAG	2845.73	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr6	76331457	rs3831261	ACT	A	80.25	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr6	76333486	rs655471	G	A	332.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr6	76357593	rs569731	G	A	3659.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:2,134:0.99:136
chr6	76357657	rs613562	T	A	1383.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr6	76369054	rs507662	A	G	6658.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr6	76386712	rs35745959	GT	G	156.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr6	76405700	rs7755068	A	G	1428.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr6	76538403	rs1280052	G	A	1500.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr6	76554593	rs7760587	G	A	1008.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr6	76576290	rs11756446	C	T	7302.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:1,279:1.00:280
chr6	76617511	.	ATG	A	84.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.177;ClippingRankSum=0.000;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.65;ReadPosRankSum=-0.735;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:24,8:0.25:32
chr6	76656978	rs3215818	AT	A	3490.73	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr6	76728583	rs377755519	TA	T	108.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.694;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=2.772;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.62;ReadPosRankSum=0.851;SOR=0.340;set=HC	GT:AD:AF:DP	0/1:46,21:0.31:67
chr6	76782049	rs1320537	C	A	633.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr6	78171941	rs6297	C	T	3531.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr6	79692751	rs11547228	G	A	3707.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:2,144:0.99:146
chr6	79695003	.	T	TA	964.73	.	AC=2;AF=1.00;AN=2;DP=60;set=Intersection	GT:AD:AF:DP	1/1:5,51:0.91:56
chr6	79708000	rs7747479	A	C	4768.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr6	79724740	rs68067309	C	A	2133.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:1,74:0.99:75
chr6	79787655	rs117125549	G	A	541.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.63;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr6	79913379	rs67281239	GA	G	467.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.430;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=13.76;ReadPosRankSum=0.760;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:3,31:0.91:34
chr6	79918309	rs9341761	G	A	5557.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr6	79944096	rs3076135	C	CAG	1694.73	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr6	79944355	rs9361504	T	G	6929.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr6	80341320	rs6926093	CG	GC	971.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr6	80382916	rs1883878	G	T	2010.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr6	80513565	rs149560703	G	GCTCTCTGATATGCCATC	1672.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr6	80513740	rs45512496	C	T	637.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr6	80517147	rs6915687	C	A	2406.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr6	80517204	rs6915721	C	T	1254.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr6	80579937	rs59710738	A	G	2374.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:2,94:0.98:96
chr6	80580038	rs9361569	T	G	5820.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr6	80631539	rs700483	T	A	1114.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr6	80657086	rs62407622	C	G	1255.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr6	80715838	rs240226	T	G	5212.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr6	80720487	.	GCAT	G	1636.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=67.18;QD=45.46;SOR=1.739;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr6	80720491	rs199573945	T	TAAAGA,TGA	1636.73	.	AC=2,0;AF=1.00,0.00;ALERT;AN=2;DB;DP=37;set=Intersection	GT:AF:DP	1/1:1.00:36
chr6	80720733	rs151587	G	A	491.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.98;SOR=2.670;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr6	80720742	rs239556	A	T	466.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.43;SOR=3.442;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr6	80721045	rs239558	A	G	389.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr6	80723198	rs239563	T	C	156.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr6	80724156	rs2295840	T	C	709.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr6	80724312	rs239566	A	G	1835.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr6	80724462	rs239567	C	T	291.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr6	80741328	rs239584	G	A	397.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr6	80741418	rs239585	C	T	39.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.87;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr6	80747582	rs150447407	TATAATA	T	231.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr6	80750093	rs2295841	C	G	540.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr6	80750290	rs608962	C	T	1117.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:2,46:0.96:48
chr6	80751780	rs652752	G	A	496.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr6	80774236	rs7771228	C	T	3059.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr6	80816659	.	CGCAGGCGCCCGCGAGGG	C	2202.73	.	AC=2;AF=1.00;AN=2;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr6	80837239	rs9448893	A	G	5039.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr6	80837253	rs9448894	G	T	3537.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.278;ClippingRankSum=0.000;DB;DP=208;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=18.52;ReadPosRankSum=-1.028;SOR=0.718;set=HC	GT:AD:AF:DP	1/1:23,168:0.88:191
chr6	80878508	rs139630496	A	AAGGAAGGGAGGGAGGGAGGG	1718.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.31;QD=52.08;SOR=6.666;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr6	80910622	.	C	CT	82.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.055;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=1.757;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.30;ReadPosRankSum=-0.135;SOR=1.230;set=HC	GT:AD:AF:DP	0/1:25,11:0.31:36
chr6	80912746	rs3828753	C	T	2956.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr6	81053642	rs926733	G	A	3246.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr6	82459345	.	C	CT	60.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.262;ClippingRankSum=0.000;DP=55;ExcessHet=3.0103;FS=1.356;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.15;ReadPosRankSum=2.019;SOR=0.363;set=HC	GT:AD:AF:DP	0/1:40,13:0.25:53
chr6	82910247	rs4706938	C	G	393.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr6	82910475	.	T	G	540.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.103;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=9.660;MLEAC=2;MLEAF=1.000;MQ=59.84;MQRankSum=-2.067;QD=16.39;ReadPosRankSum=0.394;SOR=0.164;set=HC	GT:AD:AF:DP	1/1:4,29:0.88:33
chr6	82912153	rs7771978	T	G	284.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr6	82924645	rs6912968	A	G	326.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr6	82930437	rs34032511	G	GA	134.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.078;ClippingRankSum=0.000;DB;DP=259;ExcessHet=3.0103;FS=1.521;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=2.857;QD=0.66;ReadPosRankSum=-1.285;SOR=0.847;set=HC	GT:AD:AF:DP	0/1:168,35:0.17:203
chr6	83666936	rs293531	T	C	3586.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.086;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=42.70;ReadPosRankSum=-0.698;SOR=0.711;set=HC	GT:AD:AF:DP	1/1:1,83:0.99:84
chr6	83666943	rs293532	G	T	3890.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.919;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=40.53;ReadPosRankSum=-0.742;SOR=0.663;set=HC	GT:AD:AF:DP	1/1:1,95:0.99:96
chr6	83733785	rs4235816	C	T	1204.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr6	83752057	rs4612135	C	G	2082.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.40;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr6	83754094	rs4455637	T	C	1419.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr6	83754481	rs2027282	T	C	378.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr6	83775201	rs6915334	C	G	2291.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr6	83822985	rs1925782	G	A	3467.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr6	83828724	rs2148010	G	A	4212.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr6	83842084	.	CCA	C	177.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.530;ClippingRankSum=0.000;DP=196;ExcessHet=3.0103;FS=0.932;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.08;ReadPosRankSum=0.219;SOR=0.533;set=HC	GT:AD:AF:DP	0/1:141,24:0.15:165
chr6	83898300	.	G	GT	158.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.775;ClippingRankSum=0.000;DP=103;ExcessHet=3.0103;FS=3.579;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.707;QD=1.65;ReadPosRankSum=-0.646;SOR=0.342;set=HC	GT:AD:AF:DP	0/1:73,23:0.24:96
chr6	84140772	rs28372716	TGGC	T	742.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr6	84233831	rs504593	G	A	5002.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr6	84266041	rs4706182	A	G	189.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=63.51;QD=31.64;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr6	84266061	rs190367013	G	A	102.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=66.83;QD=34.09;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr6	84266063	.	A	G	99.56	.	AC=2;AF=1.00;AN=2;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=66.83;QD=33.19;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr6	84284664	rs6941004	G	C	940.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr6	84284880	rs2022269	T	A	4633.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr6	84290137	rs147751300	TAAAG	T	570.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-3.263;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=11.796;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.01;ReadPosRankSum=0.989;SOR=0.194;set=HC	GT:AD:AF:DP	0/1:14,43:0.75:57
chr6	84290138	.	AAAG	A	72.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.011;ClippingRankSum=0.000;DP=63;ExcessHet=3.0103;FS=9.051;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.28;ReadPosRankSum=-0.770;SOR=2.066;set=HC	GT:AD:AF:DP	0/1:43,14:0.25:57
chr6	84292139	rs1033653	T	A	1947.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr6	84303342	rs1033655	T	C	4160.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:2,158:0.99:160
chr6	84317533	rs7752421	A	T	4764.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:1,179:0.99:180
chr6	84350654	rs217325	C	G	113.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr6	84366385	rs3037027	C	CAAG	3623.73	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr6	84368819	rs11368249	TA	T	425.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.146;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.71;ReadPosRankSum=-0.588;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:99,58:0.37:157
chr6	84375377	rs217302	G	A	1977.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr6	84649734	.	G	GT	213.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.867;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.11;ReadPosRankSum=0.033;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:19,16:0.46:35
chr6	85448103	rs761391	C	T	1014.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr6	85470100	rs74671789	G	C	2041.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr6	85470124	rs78065813	T	A	1832.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr6	85472198	rs45440592	G	A	2182.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr6	86257229	rs41271629	T	G	1248.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr6	86328431	rs2758843	A	T	166.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr6	87925826	rs71836482	GAC	G	558.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.994;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=7.129;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=0.632;QD=18.62;ReadPosRankSum=1.603;SOR=2.948;set=HC	GT:AD:AF:DP	0/1:5,25:0.83:30
chr6	87994504	rs35259282	C	T	4408.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr6	88108048	rs67076383	AGAT	A	15542.73	.	AC=2;AF=1.00;AN=2;DB;DP=362;MQ=60.09;set=Intersection	GT:AD:AF:DP	1/1:0,347:1.00:347
chr6	88109304	rs1051550	G	A	1032.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr6	88273970	rs80172606	C	T	1751.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr6	88317292	rs10706424	CA	C	159.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr6	88366708	rs2307373	C	T	2192.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr6	89388023	rs11753513	T	C	1097.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr6	89563640	.	A	AT	75.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.603;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.21;ReadPosRankSum=-0.937;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:10,8:0.44:18
chr6	89601490	rs9353633	C	T	2003.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr6	89638988	.	TA	T,TAAA	161.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=16.17;SOR=0.693;set=HC	GT:AD:AF:DP	1/2:0,6,4:0.60,0.40:10
chr6	89650922	rs9451108	C	A	2787.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:2,105:0.98:107
chr6	89856194	.	C	G	1557.77	.	AC=2;AF=1.00;AN=2;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr6	89858851	rs6926895	G	A	789.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr6	89864679	rs4053639	A	G	3259.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr6	89867980	rs9344910	T	C	42.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr6	89868190	rs3831213	G	GT	791.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:2,35:0.95:37
chr6	89868287	rs2297308	G	A	315.56	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:1,12:0.92:13
chr6	89871759	rs2297309	G	A	5973.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:1,212:1.00:213
chr6	89894968	rs407206	G	A	1130.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr6	89895202	rs406462	G	A	1316.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.48;SOR=1.044;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr6	89895207	rs364936	G	A	1316.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.03;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr6	89907873	rs422751	G	A	3792.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr6	89909204	rs55999329	G	A	3076.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:4,118:0.97:122
chr6	89914439	rs12524474	A	G	3897.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr6	89914477	rs1556432	G	A	2148.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr6	89974063	rs723041	T	C	6172.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr6	89977322	rs58233945	C	CT	4344.73	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr6	89977906	rs4707535	T	C	412.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr6	89981413	rs282117	T	C	7146.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr6	90062329	.	C	CA	6229.73	.	AC=2;AF=1.00;AN=2;DP=175;MQ=60.25;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr6	90089830	.	C	T	3673.77	.	AC=2;AF=1.00;AN=2;DP=133;set=Intersection	GT:AD:AF:DP	1/1:1,130:0.99:131
chr6	90315789	rs3748085	A	G	3300.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr6	90327873	rs6909915	G	A	1439.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr6	90333058	rs10944455	T	A	2675.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr6	90333599	rs17292811	A	G	2156.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr6	90334101	rs4487551	T	C	886.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr6	90338816	rs200010448	G	GT	55.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.111;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=3.932;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.33;ReadPosRankSum=0.782;SOR=1.574;set=HC	GT:AD:AF:DP	0/1:32,10:0.24:42
chr6	90347511	rs34012596	T	C	3746.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr6	90348480	rs57174507	T	TG	2928.73	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr6	90360757	rs9359858	A	G	1113.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr6	90361811	rs761729	G	A	1669.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr6	90363849	rs59855758	G	A	1539.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:1,56:0.98:57
chr6	90366329	rs11378629	C	CT	264.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.389;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.83;ReadPosRankSum=0.368;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:8,22:0.73:30
chr6	90371202	rs9444701	G	A	3678.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:1,139:0.99:140
chr6	90371704	rs9294443	G	A	1054.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr6	90381849	rs7764076	A	G	963.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr6	90382150	rs715203	C	A	1605.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr6	90385754	rs9451261	A	G	1078.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr6	90387233	rs6454769	C	T	2396.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr6	90402840	rs9351212	C	A	4389.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr6	90405306	rs9294446	T	A	8341.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr6	90405993	rs9362672	C	G	540.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr6	90410051	.	G	A	2209.77	.	AC=2;AF=1.00;AN=2;DP=82;set=Intersection	GT:AD:AF:DP	1/1:1,80:0.99:81
chr6	90415764	rs7743484	A	G	3944.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr6	90418262	rs2026634	C	T	3178.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr6	90418331	rs55729223	A	G	1800.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:1,66:0.99:67
chr6	90422627	rs2013736	G	C	824.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr6	90426270	rs9342205	C	T	611.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr6	90428968	rs6454774	G	A	1949.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr6	90432584	rs2016744	A	T	1073.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.26;SOR=2.073;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr6	90432662	rs756363	C	T	3142.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr6	90437541	rs141476254	AG	A	6067.73	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr6	90437546	rs112893069	C	T	6240.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr6	90437699	rs7767196	G	A	6585.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr6	90448092	rs4140446	C	T	7983.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr6	90453492	rs11358713	AC	A	8471.73	.	AC=2;AF=1.00;AN=2;DB;DP=306;MQ=60.11;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr6	90455084	rs9359861	A	G	4733.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr6	90455429	rs9444704	T	C	430.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr6	90457093	.	GC	CT	11306.77	.	AC=2;AF=1.00;AN=2;DP=254;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr6	90459454	rs4053618	G	A	2873.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr6	90468465	rs6937244	C	A	1723.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:2,75:0.97:77
chr6	90486325	rs41402447	T	C	8238.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:2,307:0.99:309
chr6	90497814	rs4707570	G	A	267.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr6	90556397	.	C	CTTTT	1047.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.077;ClippingRankSum=0.000;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.32;ReadPosRankSum=-0.636;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:2,35:0.95:37
chr6	90565242	rs369328	A	G	565.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr6	90577602	rs60966143	C	T	8558.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:2,341:0.99:343
chr6	90583290	rs11752307	T	C	262.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr6	90583396	rs9344967	T	C	882.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr6	90605836	rs7738845	T	A	1489.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr6	90647759	rs182382	G	C	2443.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.09;SOR=2.022;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr6	91256928	rs2273567	A	T	2057.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:2,81:0.98:83
chr6	91260116	rs205343	T	C	1709.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr6	91266349	rs3215663	T	TA	2984.73	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:12,147:0.92:159
chr6	91269333	rs468155	TC	AA	4387.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;JOINED;set=Intersection	GT:AD:AF:DP	1/1:1,98:0.99:99
chr6	91281634	rs35467094	TA	T	301.84	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.037;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=2.566;MLEAC=1;MLEAF=0.500;MQ=60.55;MQRankSum=0.879;QD=9.74;ReadPosRankSum=-0.318;SOR=0.314;set=HC	GT:AD:AF:DP	0/1:6,25:0.81:31
chr6	91296420	rs282070	C	G	2321.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr6	94067846	rs11970556	A	C	802.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.67;SOR=2.147;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr6	94067981	rs164544	C	T	3872.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr6	95173764	rs1322420	C	T	1606.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr6	96034560	rs62417812	C	T	3207.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:1,118:0.99:119
chr6	96034612	rs62417813	G	A	3955.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:4,147:0.97:151
chr6	96650908	rs4307180	A	T	2047.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr6	96651740	rs3811069	A	G	3410.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr6	96974386	rs9320194	A	G	816.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr6	97000341	.	CT	C	217.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.615;ClippingRankSum=0.000;DP=172;ExcessHet=3.0103;FS=0.771;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.30;ReadPosRankSum=-1.730;SOR=0.539;set=HC	GT:AD:AF:DP	0/1:126,41:0.25:167
chr6	97339088	rs11402	C	T	2823.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr6	97339275	rs34213186	C	CA	1338.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.423;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.13;MQRankSum=0.301;QD=17.61;ReadPosRankSum=-2.659;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:6,70:0.92:76
chr6	97562207	rs74787311	G	T	2594.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:3,94:0.97:97
chr6	97575196	rs2206094	C	T	1203.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr6	97575423	rs1612775	G	C	430.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr6	97578888	rs2387931	A	G	1006.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr6	97613163	rs1209290	T	C	4006.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr6	97626374	rs1737145	A	G	2045.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:2,78:0.97:80
chr6	97627519	rs12202912	C	T	585.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr6	97630016	rs199987050	G	GT	144.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.847;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=4.366;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=2.452;QD=1.93;ReadPosRankSum=-0.737;SOR=1.471;set=HC	GT:AD:AF:DP	0/1:55,20:0.27:75
chr6	97677118	rs9481410	G	A	8399.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr6	97679540	rs34952523	GA	G	1510.73	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.89;SOR=1.385;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr6	97694582	rs113639235	A	ATAG	2751.73	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr6	97702313	rs67917473	AATTT	A	1253.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr6	97711214	rs61740678	C	T	2440.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr6	99283376	rs195860	T	G	7557.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:2,268:0.99:270
chr6	99353272	rs6935315	A	G	2888.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:4,132:0.97:136
chr6	99572765	rs114569756	A	G	1423.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.47;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr6	99572771	rs35787630	AT	A	1176.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.58;SOR=3.690;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr6	99817419	rs11437017	T	TC	1074.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr6	99817601	rs4144164	A	G	2639.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr6	99819379	rs6925344	T	C	3140.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr6	99825225	rs147407435	T	TC	11328.73	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:1,321:1.00:322
chr6	99841907	rs9389317	T	G	1929.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr6	99842148	rs35863376	C	CTT	235.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.112;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.47;MQRankSum=0.992;QD=11.79;ReadPosRankSum=-0.047;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:4,16:0.80:20
chr6	99848256	rs1128347	A	T	1675.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr6	99850350	rs67043839	GGTTA	G	907.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr6	99852267	rs11154824	T	C	742.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr6	99853866	rs7744072	G	A	1021.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr6	99860747	rs9321539	T	C	1627.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr6	99883515	rs13208607	G	C	735.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:2,27:0.93:29
chr6	99883704	rs6570065	T	C	3644.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr6	99883842	rs7745005	C	T	570.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr6	99887911	rs141842420	C	CA	194.75	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr6	99891391	rs34401990	T	C	1940.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr6	99891395	rs140108249	CTG	C	1965.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr6	99893878	rs12203426	T	C	3328.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:1,116:0.99:117
chr6	99916182	rs10457650	G	A	538.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr6	99923899	rs11154875	G	T	1747.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr6	99999842	rs145717552	A	T	1222.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr6	100061624	.	CCCG	C	103.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.751;ClippingRankSum=0.000;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.42;ReadPosRankSum=-0.206;SOR=0.479;set=HC	GT:AD:AF:DP	0/1:65,8:0.11:73
chr6	100368759	rs4839764	G	A	911.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr6	100895344	rs397662	C	T	3710.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr6	100964147	rs240780	G	C	2786.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr6	101166095	rs41288423	G	A	5709.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr6	101215223	rs11345864	TA	T	2392.73	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:4,119:0.97:123
chr6	101215244	rs7746961	A	G	2902.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:1,107:0.99:108
chr6	101247503	rs3811078	T	C	2553.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr6	101253788	rs4839792	A	T	775.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr6	101296513	.	C	T	7951.77	.	AC=2;AF=1.00;AN=2;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr6	102337480	.	CT	C	83.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.230;ClippingRankSum=0.000;DP=68;ExcessHet=3.0103;FS=2.790;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=0.000;QD=1.44;ReadPosRankSum=0.773;SOR=1.153;set=HC	GT:AD:AF:DP	0/1:39,19:0.33:58
chr6	102503196	rs2227281	C	T	3382.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr6	102503317	rs2227283	G	A	6453.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr6	102513865	rs1034253	C	T	1378.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:1,52:0.98:53
chr6	105259122	.	C	CATAT	1370.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.278;ClippingRankSum=0.000;DP=59;ExcessHet=3.0103;FS=2.476;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=0.482;QD=35.15;ReadPosRankSum=-1.328;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:5,34:0.87:39
chr6	105300070	rs201776642	C	CTG,CTGTG	1323.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=30;set=Intersection	GT:AF:DP	1/1:1.00:30
chr6	105300072	.	GTC	G	354	.	AC=1;AF=0.500;AN=2;BRF=0.44;FR=0.5001;HP=2;HapScore=3;MGOF=26;MMLQ=27;MQ=59.04;NF=19;NR=2;PP=354;QD=18.2857142857;SC=TGTCCAAACTGTCTGTGTGTG;SbPval=0.68;Source=Platypus;TC=27;TCF=24;TCR=3;TR=21;WE=105300082;WS=105300060;set=Platypus	GT:AD:AF:DP	0/1:6,21:0.78:27
chr6	105300074	rs2499661	C	G	1388.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.08;SOR=2.235;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr6	105300105	rs2499662	C	T	1936.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:2,57:0.97:59
chr6	105300262	rs10635352	C	CAG	3944.73	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:1,92:0.99:93
chr6	105307435	rs2499655	G	A	8426.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr6	105388405	rs7766336	T	G	794.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.79;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr6	105405220	rs61701350	T	TC	413.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr6	105548850	rs221657	C	T	760.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr6	105577172	rs9404603	A	G	867.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr6	105577224	rs9404604	A	C	1873.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr6	105577401	rs4946656	C	T	3341.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr6	105595261	rs1190274	G	A	4194.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr6	105602108	rs1190280	T	G	1247.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr6	105614436	rs41285462	T	C	4243.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr6	105614712	rs1190292	T	G	1907.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr6	105614743	rs67687316	TTG	T	517.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.319;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.36;MQRankSum=0.516;QD=25.89;ReadPosRankSum=1.712;SOR=2.712;set=HC	GT:AD:AF:DP	1/1:1,19:0.95:20
chr6	105771406	rs12213914	G	A	2286.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:1,79:0.99:80
chr6	106547372	rs811925	C	G	3687.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr6	106899793	rs7763469	C	T	1199.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr6	106959936	rs783420	G	C	5014.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr6	106959999	rs1340623	C	G	5069.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr6	106973313	rs710096	T	C	2055.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr6	106987161	rs783397	A	G	1969.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr6	106987370	rs783396	A	C	8434.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr6	106989212	rs783392	G	A	3992.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr6	106992464	rs1799693	A	G	1512.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr6	106992592	rs2247335	A	T	2264.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr6	106992844	rs2066201	C	G	702.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr6	106999658	rs1676010	A	T	2378.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr6	107001456	rs1770731	A	T	5753.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr6	107001581	rs1770732	T	C	969.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr6	107003810	rs2066202	T	C	2220.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr6	107006347	rs4946763	T	C	2375.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr6	107050867	rs6568446	A	T	730.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr6	107069232	rs1870868	G	A	2948.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr6	107077502	rs2054365	G	A	1496.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr6	107097123	rs34503502	AAC	A	2086.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:1,50:0.98:51
chr6	107113715	rs2015205	G	A	5274.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr6	107113953	rs2169463	C	G	1124.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr6	107231881	rs376280113	GTC	G	234.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.245;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=3.604;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.91;ReadPosRankSum=0.607;SOR=1.149;set=HC	GT:AD:AF:DP	0/1:102,21:0.17:123
chr6	107351195	.	G	GT,GTT	464.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.230;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=15.49;ReadPosRankSum=-0.031;SOR=0.468;set=HC	GT:AD:AF:DP	1/2:4,16,10:0.53,0.33:30
chr6	107351457	rs1665924	G	T	1623.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr6	107361476	rs311207	A	G	915.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr6	107365376	rs7767291	C	T	604.78	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:2,23:0.92:25
chr6	107365411	rs311249	G	T	1289.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:2,49:0.96:51
chr6	107372242	rs3833659	GTTTTC	G	3561.73	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:1,83:0.99:84
chr6	107420516	rs4946811	A	C	6936.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr6	107566946	rs9373933	A	G	125.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr6	107956095	rs9486659	A	G	899.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr6	108026317	rs1546962	G	T	1302.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr6	108026402	rs1546961	A	C	3490.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr6	108026455	rs1546960	A	G	3432.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr6	108028996	rs3734751	G	A	15389.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:0,347:1.00:347
chr6	108029020	rs3734752	T	C	17610.77	.	AC=2;AF=1.00;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	1/1:0,436:1.00:436
chr6	108042213	rs846977	G	A	6345.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.76;SOR=0.987;set=HC	GT:AD:AF:DP	1/1:0,145:1.00:145
chr6	108042216	rs3734756	C	T	6345.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.38;SOR=1.027;set=HC	GT:AD:AF:DP	1/1:0,143:1.00:143
chr6	108042334	rs846978	T	C	735.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr6	108093328	rs9480798	G	A	629.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr6	108093580	rs6909292	C	T	802.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr6	108193148	rs642954	C	T	669.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr6	108194241	rs579120	T	C	2637.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr6	108197998	rs570558	A	G	315.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr6	108224422	rs2272886	A	C	6124.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr6	108224599	.	C	CA	329.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.718;ClippingRankSum=0.000;DP=337;ExcessHet=3.0103;FS=1.329;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.17;ReadPosRankSum=0.660;SOR=0.812;set=HC	GT:AD:AF:DP	0/1:224,59:0.21:283
chr6	108230346	rs617920	A	T	792.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr6	108233929	rs675117	G	A	1559.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr6	108243115	rs142388422	T	TGGG	2003.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.684;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=2.322;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.27;ReadPosRankSum=-0.288;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:16,100:0.86:116
chr6	108243120	.	AAAAAC	A	1226.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.235;ClippingRankSum=0.000;DP=149;ExcessHet=3.0103;FS=1.738;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.58;ReadPosRankSum=-0.440;SOR=0.504;set=HC	GT:AD:AF:DP	0/1:31,85:0.73:116
chr6	108243124	.	AC	A	915	.	AC=2;AF=1.00;AN=2;BRF=0.43;FR=1.0000;HP=4;HapScore=1;MGOF=8;MMLQ=23;MQ=60.0;NF=7;NR=69;PP=915;QD=12.3815789474;SC=CTGGGGAAAAACAAAAAAAAA;SbPval=0.53;Source=Platypus;TC=77;TCF=7;TCR=70;TR=76;WE=108243133;WS=108243105;set=Platypus	GT:AD:AF:DP	1/1:1,76:0.99:77
chr6	108277287	rs9486756	C	A	1463.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr6	108279290	rs2272884	G	A	2899.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr6	108375581	rs10484902	T	C	259.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr6	108487877	rs127501	A	G	1051.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr6	108489462	rs383319	G	A	677.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr6	108495950	rs2233492	G	A	630.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr6	108498014	rs10563315	CTG	C	5253.73	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr6	108677003	rs2135941	G	A	2291.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr6	109258284	rs2768558	T	C	1037.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr6	109330758	rs148473451	CG	C	366.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr6	109480681	.	C	CT	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.488;ClippingRankSum=0.000;DP=212;ExcessHet=3.0103;FS=0.787;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.19;ReadPosRankSum=1.016;SOR=0.821;set=HC	GT:AD:AF:DP	0/1:144,27:0.16:171
chr6	109575596	rs6919557	C	G	760.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr6	109583186	rs1040285	A	G	3329.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr6	109615603	rs9487048	G	T	6515.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:1,244:1.00:245
chr6	109616762	rs9400272	A	G	6257.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr6	109621494	rs6927569	T	C	1711.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr6	109629142	rs56150455	C	A	2292.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr6	109659589	.	TCACACA	T,TCA	2971.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=85;set=Intersection	GT:AF:DP	1/2:0.17,0.82:72
chr6	109659612	rs80090825	C	G	2482.89	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.301;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=3.395;MLEAC=2;MLEAF=1.000;MQ=59.97;MQRankSum=0.000;QD=26.70;ReadPosRankSum=-0.062;SOR=1.450;set=HC	GT:AD:AF:DP	1/1:8,85:0.91:93
chr6	109665129	rs10457190	C	G	504.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr6	109673933	rs1040284	T	C	3626.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr6	109674055	rs11153174	C	T	8861.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:0,336:1.00:336
chr6	109689431	rs974034	A	G	2089.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr6	109702646	rs3799840	A	T	2936.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr6	109703391	rs1885691	C	T	1102.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr6	109703683	rs2275652	G	C	2503.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr6	109703727	rs1322816	C	A	1224.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr6	109726262	rs34887926	G	GA	379.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.632;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=2.813;MLEAC=1;MLEAF=0.500;MQ=60.80;MQRankSum=0.735;QD=15.82;ReadPosRankSum=-2.411;SOR=1.492;set=HC	GT:AD:AF:DP	1/1:3,21:0.88:24
chr6	109752565	rs58424410	C	CA,CAA	1101.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.335;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=5.891;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.12;MQRankSum=0.397;QD=16.95;ReadPosRankSum=1.080;SOR=0.442;set=HC	GT:AD:AF:DP	1/2:7,35,23:0.54,0.35:65
chr6	109761437	rs4945831	A	G	11383.77	.	AC=2;AF=1.00;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	1/1:0,419:1.00:419
chr6	109762236	rs1048203	G	A	3909.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr6	109764535	rs1476387	G	T	10132.77	.	AC=2;AF=1.00;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	1/1:1,377:1.00:378
chr6	109767631	rs6149743	T	TGTGGTCTGGTCAGTGACCTGCCCAGG	4285.74	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:2,95:0.98:97
chr6	109767930	rs9320288	GC	TT	3688.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr6	109768295	rs910730	G	A	2176.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr6	109769224	rs72092669	AACAG	A	1883.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr6	109769300	.	G	GACACACACACACACACACACACACACACAC	466.73	.	AC=2;AF=1.00;AN=2;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.92;QD=51.86;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr6	109769319	.	ACCGCCTTCTCCCTCTGT	A	1039	.	AC=1;AF=0.500;AN=2;BRF=0.29;FR=0.5000;HP=3;HapScore=1;MGOF=122;MMLQ=24;MQ=59.96;NF=13;NR=6;PP=1039;QD=55.0;SC=ACACACACACACCGCCTTCTC;SbPval=0.57;Source=Platypus;TC=19;TCF=13;TCR=6;TR=19;WE=109769343;WS=109769309;set=Platypus	GT:AD:AF:DP	1/0:0,19:1.00:19
chr6	109769336	rs111385895	TCACACACA	T	881.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;MQ=59.96;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr6	109770999	rs752262	G	C	4241.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr6	109775436	rs2277113	T	C	1615.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr6	109786980	rs3734652	T	C	4694.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr6	109797304	rs2236084	A	G	4866.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr6	109815351	rs7755941	T	C	3057.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr6	109815440	rs7773950	A	G	1062.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr6	109818529	.	TCACA	T,TCA	1945.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.456;ClippingRankSum=0.000;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=23.44;ReadPosRankSum=2.280;SOR=0.761;set=HC	GT:AD:AF:DP	1/2:5,27,51:0.33,0.61:83
chr6	109818585	rs71018346	TCTCA	T	2105.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.286;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=3.372;MLEAC=1;MLEAF=0.500;MQ=62.27;MQRankSum=-0.636;QD=13.76;ReadPosRankSum=-2.105;SOR=0.929;set=HC	GT:AD:AF:DP	0/1:39,114:0.75:153
chr6	109827716	rs2277114	C	T	3009.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr6	109830298	rs6912368	C	T	4393.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr6	109837859	rs10872035	T	C	2629.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr6	109837879	rs7773915	A	G	1881.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr6	109850199	rs72331392	AAC	A	666.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.754;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=1.241;MLEAC=1;MLEAF=0.500;MQ=61.40;MQRankSum=0.559;QD=11.70;ReadPosRankSum=0.881;SOR=0.478;set=HC	GT:AD:AF:DP	0/1:12,45:0.79:57
chr6	109863238	rs9386812	A	C	1731.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr6	109871163	rs9400294	G	A	1084.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr6	109885475	rs10499052	G	A	2001.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:2,76:0.97:78
chr6	109886159	rs10872047	C	T	205.80	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr6	109906329	rs71770197	GCTT	G	793.84	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:2,22:0.92:24
chr6	109940498	rs10499053	A	G	2060.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr6	109954065	.	C	CATAGATAG,CATAG	690.73	.	AC=2,0;AF=1.00,0.00;AN=2;DP=20;set=Intersection	GT:AF:DP	1/1:1.00:15
chr6	109954252	rs1406957	C	T	3165.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr6	109962904	rs7744981	A	C	466.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr6	109982160	rs2016207	C	T	1338.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr6	109993291	rs12197838	G	A	2881.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr6	110048489	rs11459279	C	CT,CTT	770.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.144;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.63;MQRankSum=0.364;QD=21.41;ReadPosRankSum=1.349;SOR=0.616;set=HC	GT:AD:AF:DP	1/2:1,25,10:0.69,0.28:36
chr6	110053721	rs11153215	T	G	329.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr6	110053824	rs11377100	G	GT	446.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.729;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=1.427;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.31;ReadPosRankSum=1.360;SOR=1.101;set=HC	GT:AD:AF:DP	0/1:12,36:0.75:48
chr6	110059510	rs2273752	C	A	1655.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.71;SOR=1.057;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr6	110062873	rs1322124	T	G	1388.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr6	110086098	rs146520572	T	TTTTTTGTTTTTG	1575.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.75;SOR=4.743;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr6	110106234	rs10499054	A	G	1340.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr6	110110943	rs9384723	G	T	847.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr6	110113763	rs200535694	CT	C	154.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.700;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.93;ReadPosRankSum=-0.816;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:130,37:0.22:167
chr6	110146303	rs1127771	G	A	9084.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:2,339:0.99:341
chr6	110643956	rs6908306	T	C	2685.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr6	110644112	rs112341783	A	AG	1661.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr6	110714584	rs2235989	A	T	1426.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr6	110778323	rs717567	G	A	428.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr6	110797214	rs2428188	C	G	2928.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr6	110797563	rs2494551	A	C	2430.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr6	110797605	rs2494552	G	A	7590.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.73;SOR=1.788;set=HC	GT:AD:AF:DP	1/1:0,166:1.00:166
chr6	110797612	rs6920997	A	G	8214.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.70;SOR=1.414;set=HC	GT:AD:AF:DP	1/1:0,197:1.00:197
chr6	110797703	rs150666553	CCGCGGG	C	16400.73	.	AC=2;AF=1.00;AN=2;DB;DP=380;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.06;SOR=1.005;set=HC	GT:AD:AF:DP	1/1:0,364:1.00:364
chr6	110797713	.	C	CCACCCCT	17117.73	.	AC=2;AF=1.00;AN=2;DP=369;set=Intersection	GT:AD:AF:DP	1/1:0,369:1.00:369
chr6	110797821	rs11153236	A	G	4848.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr6	110797905	rs6922017	G	C	1098.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr6	110943914	rs9487465	T	C	1010.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr6	111213927	rs34637914	T	TC	279.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.90;QD=25.43;SOR=4.977;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr6	111329221	rs35637912	CT	C	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.001;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=2.115;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.11;ReadPosRankSum=0.671;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:9,7:0.44:16
chr6	111346806	rs1044387	C	T	1357.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.43;SOR=0.957;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr6	111346806	.	CTG	TTA	813	.	AC=2;AF=1.00;AN=2;BRF=0.51;FR=1.0000;HP=1;HapScore=1;MGOF=16;MMLQ=24;MQ=60.0;NF=9;NR=12;PP=813;QD=41.2603749934;SC=CCAGCCACTACTGTTTCATTG;SbPval=0.58;Source=Platypus;TC=21;TCF=9;TCR=12;TR=21;WE=111346816;WS=111346796;set=Platypus	GT:AD:AF:DP	1/1:0,21:1.00:21
chr6	111346808	rs1044388	G	A	1357.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.26;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr6	111346843	rs1044389	G	A	495.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr6	111499394	rs12213248	G	C	876.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr6	111527988	rs402940	G	A	3728.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr6	111528041	rs12191266	T	C	1819.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr6	111539925	rs77627779	C	G	320.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr6	111581114	.	CTTT	C	87.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.957;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=-0.746;QD=3.66;ReadPosRankSum=1.529;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:16,8:0.33:24
chr6	111587266	rs11153279	T	C	9488.77	.	AC=2;AF=1.00;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	1/1:2,363:0.99:365
chr6	111628597	rs3204954	C	G	2326.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr6	111628626	rs3204953	C	T	3544.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr6	111628999	rs113742829	AT	A	1083.73	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:2,57:0.97:59
chr6	111654680	rs5879102	CT	C	308.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:2,21:0.91:23
chr6	111665023	rs240990	G	A	941.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr6	111695073	rs455645	C	T	6962.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:2,253:0.99:255
chr6	111695887	rs462779	G	A	3575.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr6	111696129	rs3218591	T	A	7257.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr6	111696257	rs461646	G	A	3760.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr6	111711232	rs11376056	C	CG	532.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr6	111793561	rs7772141	T	C	221.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr6	111915564	rs174388	C	G	249.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr6	111918865	rs174393	G	A	636.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr6	111918999	rs174394	T	G	6343.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.75;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,145:1.00:145
chr6	111919007	rs174395	G	A	6417.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.96;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:0,146:1.00:146
chr6	112420386	rs75237599	A	G	785.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr6	112443134	rs4945897	G	A	1938.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr6	112450351	rs2157550	G	C	1276.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr6	112454185	rs764587	A	G	2234.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr6	112454245	rs3734287	T	C	681.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr6	112457390	rs2032567	C	T	6696.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr6	112457471	rs2032568	G	A	4802.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr6	112508769	rs9387061	TG	GT	4179.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr6	112521183	rs2237242	G	A	2237.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr6	112521387	rs4947176	A	C	3186.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr6	114178831	rs113531174	C	CGCT	1811.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.87;QD=42.13;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr6	114181914	rs45449896	GTT	G	873.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:6,32:0.84:38
chr6	114265587	rs13204445	T	C	5057.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:3,198:0.99:201
chr6	114279783	rs2243356	A	T	1356.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr6	114383894	rs148758563	AG	A	13926.73	.	AC=2;AF=1.00;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	1/1:0,363:1.00:363
chr6	116263524	rs12208531	G	A	640.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr6	116323910	rs1338667	T	A	4208.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr6	116324898	rs3798227	A	G	2284.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr6	116422281	rs36043015	C	G	6371.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr6	116427506	rs201136700	CTT	C,CT	423.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.170;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=3.582;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.49;MQRankSum=0.535;QD=10.86;ReadPosRankSum=1.227;SOR=0.275;set=HC	GT:AD:AF:DP	1/2:7,16,16:0.41,0.41:39
chr6	116429623	rs517352	T	A	1693.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr6	116436944	rs62414122	A	T	1115.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr6	116439220	rs515745	A	G	495.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr6	116441229	rs111661664	T	TGGG	1726.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr6	116441545	.	C	A	4137.77	.	AC=2;AF=1.00;AN=2;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr6	116559627	.	TAA	T	118.80	.	AC=2;AF=1.00;AN=2;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.80;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr6	116560025	rs1204816	G	C	298.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr6	116720487	rs10485183	C	T	10047.77	.	AC=2;AF=1.00;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	1/1:0,368:1.00:368
chr6	116757557	rs560644	T	C	6577.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr6	116833053	rs140516625	T	C	2414.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr6	116892681	rs147899431	G	C	3599.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr6	116950833	rs784133	T	C	2274.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr6	117045674	rs1150108	A	G	76.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr6	117045690	rs60931389	C	T	70.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr6	117053237	.	T	TTTTATATATA	210	.	AC=2;AF=1.00;AN=2;BRF=0.29;FR=1.0000;HP=2;HapScore=2;MGOF=6;MMLQ=26;MQ=62.02;NF=7;NR=0;PP=210;QD=30.4285714286;SC=AACAGTTTGTTTATATATATA;SbPval=1.0;Source=Platypus;TC=7;TCF=7;TCR=0;TR=7;WE=117053245;WS=117053227;set=Platypus	GT:AD:AF:DP	1/1:0,7:1.00:7
chr6	117073894	.	TA	GA	1331	.	AC=1;AF=0.500;AN=2;BRF=0.24;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=25;MMLQ=21;MQ=60.61;NF=5,3;NR=9,39;PP=180,1331;QD=15.3408008962;SC=TATATATATATATAGATACAC;SbPval=0.36;Source=Platypus;TC=57;TCF=16;TCR=41;TR=14,42;WE=117073926;WS=117073884;set=Platypus	GT:AD:AF:DP	0/1:43,14:0.25:57
chr6	117073894	.	TA	TAGA	1331	.	AC=1;AF=0.500;AN=2;BRF=0.24;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=25;MMLQ=21;MQ=60.61;NF=5,3;NR=9,39;PP=180,1331;QD=15.3408008962;SC=TATATATATATATAGATACAC;SbPval=0.36;Source=Platypus;TC=57;TCF=16;TCR=41;TR=14,42;WE=117073926;WS=117073884;set=Platypus	GT:AD:AF:DP	0/1:2,42:0.95:44
chr6	117073894	rs187417811	T	G,TAG	1653.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.878;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.81;MQRankSum=0.441;QD=35.19;ReadPosRankSum=0.649;SOR=0.540;set=HC	GT:AD:AF:DP	1/2:2,11,34:0.23,0.72:47
chr6	117073918	rs141678188	T	TATATAC,TATATATAC	1274.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.175;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=61.49;MQRankSum=0.394;QD=41.12;ReadPosRankSum=0.965;SOR=4.047;set=HC	GT:AD:AF:DP	1/2:1,6,24:0.19,0.77:31
chr6	117114290	rs35937022	A	G	5326.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:1,195:0.99:196
chr6	117114403	rs6901971	G	A	1512.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr6	117121894	rs6917467	G	A	4122.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr6	117130544	rs28360548	A	C	4637.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr6	117130704	rs2274911	G	A	5196.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr6	117149872	rs11753705	A	T	857.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:1,27:0.96:28
chr6	117237584	rs2184343	T	G	1377.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr6	117243181	.	C	CT	293.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.896;ClippingRankSum=0.000;DP=100;ExcessHet=3.0103;FS=1.875;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.06;ReadPosRankSum=2.732;SOR=0.933;set=HC	GT:AD:AF:DP	0/1:67,29:0.30:96
chr6	117246576	rs67292089	G	GA	3300.73	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr6	117609529	rs2778	A	G	1201.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr6	117678083	rs2243384	A	G	5619.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr6	117681436	rs150963992	G	GAC,GACAC	2896.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=98;set=Intersection	GT:AF:DP	1/2:0.19,0.73:93
chr6	117716047	rs117931526	T	C	1902.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr6	117725383	rs373760201	CA	C	138.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.695;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=7.241;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.703;QD=1.35;ReadPosRankSum=-0.514;SOR=1.626;set=HC	GT:AD:AF:DP	0/1:73,30:0.29:103
chr6	117842669	rs72963484	T	A	1390.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr6	117858223	rs72965515	G	C	3774.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:2,137:0.99:139
chr6	117858455	rs112120142	T	C	1254.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr6	117869286	rs11153674	G	T	7166.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr6	117869424	rs929059	G	A	14851.77	.	AC=2;AF=1.00;AN=2;DB;DP=566;set=Intersection	GT:AD:AF:DP	1/1:3,558:0.99:561
chr6	117869491	rs210621	G	A	17337.77	.	AC=2;AF=1.00;AN=2;DB;DP=651;set=Intersection	GT:AD:AF:DP	1/1:0,644:1.00:644
chr6	117996818	rs9767451	T	C	75.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.69;QD=18.76;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr6	118475798	rs205966	G	A	2389.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:1,90:0.99:91
chr6	118556628	rs9489326	T	C	1766.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr6	118635079	rs1572226	C	G	728.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr6	118635122	rs283049	G	C	1396.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr6	118786486	rs3798420	T	C	3875.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr6	118801232	rs67283653	TCA	T	415.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr6	118803195	.	TAA	T	209.73	.	AC=2;AF=1.00;AN=2;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=17.48;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:4,8:0.67:12
chr6	118832320	rs9489424	T	C	687.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr6	118886615	rs763254	T	C	3440.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr6	118886961	rs3734382	G	T	4115.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr6	118887303	rs3734381	T	C	6671.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:1,252:1.00:253
chr6	118973953	rs9489486	A	G	1485.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr6	118974042	rs9489487	C	T	685.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr6	119149149	rs284921	C	G	3188.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr6	119177480	rs36160966	T	G	1917.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr6	119300477	rs4946382	A	G	2776.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr6	119323987	rs3756940	A	T	1041.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr6	119327112	rs794262	G	A	594.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr6	119346912	rs6929403	G	A	2507.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr6	119611708	rs9489670	C	T	168.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr6	119611989	rs9489671	A	T	352.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr6	119623079	rs6917129	A	G	62.74	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr6	119623079	.	AT	GC	69	.	AC=2;AF=1.00;AN=2;BRF=0.0;FR=0.9998;HP=1;HapScore=2;MGOF=19;MMLQ=28;MQ=60.0;NF=2;NR=0;PP=69;QD=61.2339374311;SC=TAATACAATAATAGGGCCCAC;SbPval=1.0;Source=Platypus;TC=2;TCF=2;TCR=0;TR=2;WE=119623088;WS=119623069;set=Platypus	GT:AD:AF:DP	1/1:0,2:1.00:2
chr6	119623080	rs72966433	T	C	62.74	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr6	119623358	rs11153807	G	A	251.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr6	119623415	rs6918089	G	A	186.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr6	119627976	rs6915559	G	A	4168.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr6	119628029	rs195092	C	T	6756.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr6	119628198	rs6915947	G	A	1931.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr6	119653186	rs7754482	G	A	1437.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr6	121436422	rs7772508	G	T	1005.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr6	121491472	rs1273749	G	A	2136.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr6	121526447	rs9320795	G	C	934.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr6	121526459	rs35328788	G	T	826.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.51;SOR=2.419;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr6	121526465	rs35549991	G	T	810.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.04;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr6	121560155	rs12191616	C	T	2123.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:2,81:0.98:83
chr6	121576666	rs10650607	T	TTTATAA	367.74	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=52.53;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr6	121577370	rs7745023	T	C	2734.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr6	121620608	rs9387944	G	T	1392.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr6	121632008	rs9372653	T	A	2413.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr6	122720778	rs45504694	C	A	3476.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr6	122734078	.	T	TA	30.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.680;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.88;ReadPosRankSum=1.573;SOR=0.395;set=HC	GT:AD:AF:DP	0/1:26,9:0.26:35
chr6	122734545	rs12527592	C	T	76.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr6	122752550	rs149578348	T	TTA	580.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr6	122767817	rs79756345	TCA	T	1072.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr6	122775195	rs499825	A	C	1097.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.141;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=1.713;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.96;ReadPosRankSum=0.912;SOR=0.357;set=HC	GT:AD:AF:DP	0/1:6,44:0.88:50
chr6	122793033	rs1267941	A	G	2193.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr6	123022625	rs143459711	C	G	8057.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:3,314:0.99:317
chr6	123038887	rs6920792	CT	GC	1577.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr6	123039201	rs34684181	T	G	403.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr6	123101348	rs2171068	G	C	410.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr6	123101647	rs2243372	A	G	1324.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr6	123110451	rs117614515	G	C	4244.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr6	123369910	rs6900862	T	C	3906.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr6	123539609	rs361509	C	T	1189.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr6	123539684	rs361508	CT	TC	4387.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr6	123539904	rs7754205	C	T	3332.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:1,122:0.99:123
chr6	123545159	rs11368178	GA	G	428.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.933;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.78;ReadPosRankSum=-1.741;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:2,27:0.93:29
chr6	123580660	rs12661887	C	T	160.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr6	123592184	rs113318627	C	CTGTG	536.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr6	123600100	rs143535631	CA	C	666.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr6	123687288	rs2873479	A	C	3052.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr6	123687432	rs7769808	T	C	872.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr6	123699042	rs6901953	T	C	988.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr6	123703101	.	GCT	G	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.092;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.44;ReadPosRankSum=0.612;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:17,5:0.23:22
chr6	123819847	rs9320940	T	C	2003.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr6	123833457	rs6902416	G	C	596.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.95;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr6	123851538	rs12196787	G	C	127.78	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr6	123851590	rs12198164	G	A	637.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:2,16:0.89:18
chr6	123851610	rs12198167	G	A	718.78	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:2,19:0.90:21
chr6	123851865	rs4897276	A	T	116.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr6	123892001	rs2145735	G	A	1532.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr6	124603390	rs802497	A	G	1469.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr6	124759017	.	G	GGTTTTT	109.74	.	AC=1;AF=0.500;ALERT;AN=2;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=21.95;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:0,5:1.00:5
chr6	124759018	.	A	T	118.78	.	AC=1;AF=0.500;ALERT;AN=2;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=39.59;SOR=2.833;set=HC	GT:AD:AF:DP	0/1:0,3:1.00:3
chr6	124759038	.	C	T	41.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;ClippingRankSum=-0.000;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.96;ReadPosRankSum=-0.210;SOR=1.518;set=HC	GT:AD:AF:DP	0/1:5,1:0.17:6
chr6	124759053	rs332614	C	T	266.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr6	124759145	rs519362	GA	AC	950.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr6	124811558	.	GT	G	47.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.662;ClippingRankSum=0.000;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.06;ReadPosRankSum=-0.180;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:33,12:0.27:45
chr6	124979689	rs1479039	T	C	2435.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr6	125139473	rs1923726	TG	GC	6403.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr6	125144352	rs2025251	T	G	8547.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:3,330:0.99:333
chr6	125229538	rs781733	T	C	5181.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:1,192:0.99:193
chr6	125229856	rs781734	C	T	1381.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr6	125230075	rs781735	A	C	1520.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr6	125230575	rs1577203	G	T	1901.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr6	125230965	rs1761559	A	G	1876.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr6	125231037	rs1761560	G	A	942.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr6	125231246	rs1750578	T	A	497.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr6	125232072	rs699387	T	C	1943.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr6	125232368	rs781740	G	T	2184.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr6	125232594	rs781741	C	A	428.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr6	125232766	rs11385725	C	CA	393.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.584;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=6.094;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.38;ReadPosRankSum=-1.160;SOR=1.034;set=HC	GT:AD:AF:DP	0/1:19,28:0.60:47
chr6	125232853	rs6569400	A	G	1220.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr6	125233518	rs781742	A	G	3997.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr6	125234008	rs139107311	G	GA	441.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr6	125366289	rs34249175	CA	C	1988.73	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:20,124:0.86:144
chr6	125402711	rs492800	C	T	2957.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr6	126072853	rs2875881	C	G	388.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr6	126073275	rs113682501	G	A	386.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.34;SOR=6.091;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr6	126075698	rs1935978	T	C	3444.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.12;QD=37.04;SOR=0.852;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr6	126075709	rs202056802	ATT	A	1458.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.423;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=0.405;QD=23.53;ReadPosRankSum=1.820;SOR=0.446;set=HC	GT:AD:AF:DP	1/1:5,57:0.92:62
chr6	126210395	rs6919947	T	G	8879.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:1,314:1.00:315
chr6	126242004	rs4563736	CG	GC	1786.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr6	126249024	rs76949168	G	A	479.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr6	126278230	rs2295005	G	C	6516.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:2,237:0.99:239
chr6	126288023	rs3757212	T	C	3336.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr6	126307962	rs6569448	A	G	299.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr6	126319881	rs6569449	T	A	570.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr6	126334041	rs2206941	G	A	2916.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr6	127471533	rs9491699	C	T	1840.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr6	127471791	rs3734626	C	T	3469.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr6	127476361	rs41285262	G	A	908.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr6	127476516	rs1892172	G	A	5655.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr6	127640190	rs9285460	A	G	1455.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr6	127651213	rs7761452	T	C	257.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr6	127663703	rs13207650	C	T	690.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr6	127768762	rs6902288	G	A	3801.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr6	127768950	rs2236027	A	C	906.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr6	127770923	rs3818135	A	C	2711.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.80;SOR=2.128;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr6	127771452	rs3734447	T	G	1754.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr6	127794289	rs41285272	T	G	120.94	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:1,6:0.86:7
chr6	127796326	rs12194762	G	C	712.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr6	128030957	rs490008	G	T	960.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr6	128040839	rs675531	T	C	5613.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr6	128176383	rs270032	A	G	632.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr6	128294055	rs72975916	C	T	1174.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr6	128297950	rs376302219	GA	G	2102.73	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:6,111:0.95:117
chr6	128297986	rs4321844	G	T	3662.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr6	128321318	rs36043888	C	CT	147.75	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr6	128324241	rs717851	T	C	2652.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr6	128330249	rs9321104	T	C	2235.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr6	128385998	rs4897241	A	G	1499.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr6	128388799	rs35030557	G	T	6027.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr6	128388990	rs4897242	A	G	2194.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr6	128389074	rs4897243	T	C	587.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr6	128403745	rs17828130	A	G	1554.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr6	129381026	rs4404787	C	A	3337.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr6	129612624	rs1015846	C	T	873.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr6	129622055	rs902373	A	G	2759.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr6	129663463	rs200038968	ACTT	A	4037.73	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr6	129722389	rs3749877	A	G	10293.77	.	AC=2;AF=1.00;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	1/1:2,374:0.99:376
chr6	129722425	rs3749878	G	A	11053.77	.	AC=2;AF=1.00;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	1/1:2,414:1.00:416
chr6	129724894	rs2326817	A	G	4629.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr6	129724942	rs3828735	T	A	13729.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.16;SOR=1.041;set=HC	GT:AD:AF:DP	1/1:0,304:1.00:304
chr6	129724944	rs80125253	CT	TG	13812.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.14;SOR=1.056;set=HC	GT:AD:AF:DP	1/1:0,306:1.00:306
chr6	129763197	rs7738519	C	T	523.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr6	129777382	rs1811970	C	T	1690.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr6	129785391	rs1414736	T	C	496.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr6	129796620	rs7741996	C	T	4794.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr6	129799682	rs2784895	C	T	2428.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr6	129802302	rs2275214	G	C	1155.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr6	129807483	rs6569604	C	G	1028.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr6	129807629	rs2229848	C	T	4965.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr6	129807699	rs2229849	G	C	4194.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr6	129807869	rs6938825	C	A	593.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr6	129823645	rs7754167	A	G	640.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr6	129835370	rs13196682	T	A	505.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr6	129905035	.	CA	C	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.095;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.80;ReadPosRankSum=0.633;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:31,11:0.26:42
chr6	129921771	rs41285296	T	C	2381.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:2,88:0.98:90
chr6	129927014	rs3813366	A	G	5268.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr6	129932894	rs7753754	T	C	579.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr6	129950406	rs4254998	A	G	489.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr6	129950764	rs72984741	T	C	205.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr6	129955117	rs9375645	A	C	1713.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr6	129955151	rs113829468	G	GA	109.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.063;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=3.710;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=2.730;QD=1.06;ReadPosRankSum=-1.223;SOR=1.210;set=HC	GT:AD:AF:DP	0/1:82,22:0.21:104
chr6	130031215	rs3752536	T	C	2342.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr6	130152479	rs7758540	T	C	2330.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr6	130152520	rs7776426	A	C	2586.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.61;SOR=0.713;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chr6	130154686	rs4629709	A	G	6317.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr6	130164764	rs9321190	G	A	2507.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr6	130164856	rs9402185	C	T	1075.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr6	130167131	rs12189832	A	G	2396.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr6	130370404	rs75575024	C	CCT	5977.73	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr6	130370731	rs142539365	TTG	T	2687.73	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr6	130371055	rs3890746	C	T	1815.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr6	130374102	rs9388768	C	A	2209.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:1,86:0.99:87
chr6	130378833	rs12661188	T	C	208.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr6	130381246	rs7451021	T	C	5130.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr6	130387431	.	G	GTATATATATATATA,GTATATATATATA	137	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.45;FR=0.5000,0.5000;HP=2;HapScore=3;MGOF=11;MMLQ=22;MQ=57.26;NF=9,9;NR=2,2;PP=73,137;QD=7.45454545455;SC=TTATTTTTGTGTATATATATA;SbPval=0.51;Source=Platypus;TC=13;TCF=11;TCR=2;TR=11,11;WE=130387439;WS=130387421;set=Platypus	GT:AF:DP	0/1:0.85:13
chr6	130387773	rs9402214	T	C	230.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr6	130425760	rs367904707	CTAATT	C	1943.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr6	130466413	rs4897369	G	A	1083.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.79;SOR=1.730;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr6	130483222	rs9321214	G	A	739.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr6	130504481	rs370056383	CA	C	176.70	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.812;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.82;ReadPosRankSum=0.189;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:4,14:0.78:18
chr6	130505128	rs144208556	TGA	T	162.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.797;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=3.690;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.62;ReadPosRankSum=1.267;SOR=0.214;set=HC	GT:AD:AF:DP	0/1:36,9:0.20:45
chr6	130505374	rs41285310	A	C	3781.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr6	130530815	rs1932100	C	T	1428.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr6	130535420	rs4897377	G	A	1440.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr6	130536494	rs34071457	AT	A	3070.73	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:2,149:0.99:151
chr6	131148541	rs4895897	A	G	6017.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr6	131148891	rs371974607	CAT	C	62.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.126;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.51;ReadPosRankSum=-1.777;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:20,5:0.20:25
chr6	131156226	rs942	C	T	1466.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr6	131186578	rs7775013	T	G	3127.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr6	131197990	rs7741462	T	C	601.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr6	131211616	rs140909070	GA	G	201.79	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.907;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=3.183;MLEAC=2;MLEAF=1.000;MQ=60.72;MQRankSum=0.573;QD=9.17;ReadPosRankSum=0.515;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:2,20:0.91:22
chr6	131481394	rs67922791	CA	C	430.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr6	131490229	rs11304126	GA	G	2645.73	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr6	131520507	rs1190789	A	G	1185.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr6	131520655	rs1190788	G	A	7092.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr6	131540726	rs3822866	A	T	608.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr6	131904704	rs60712846	G	GA	1704.73	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr6	131911655	rs2608955	A	T	501.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr6	131917379	rs2608985	A	G	888.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr6	131926334	rs2608953	C	T	2230.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr6	131929309	rs71753454	A	AC	1129.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr6	131931092	rs2245133	T	C	1070.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr6	131936324	rs139719926	GTTT	G	1447.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr6	131940890	rs2297638	A	C	590.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr6	131948469	rs60163644	GA	G	1061.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.619;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=10.191;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.17;ReadPosRankSum=1.493;SOR=1.615;set=HC	GT:AD:AF:DP	0/1:46,102:0.69:148
chr6	131948816	rs369598986	T	TA,TAA	3079.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.659;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=3.279;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=22.00;ReadPosRankSum=0.327;SOR=0.301;set=HC	GT:AD:AF:DP	1/2:8,27,105:0.19,0.75:140
chr6	131958485	rs9375819	A	C	6977.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr6	131973932	rs3765562	C	G	4522.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr6	131998001	.	G	GT	188.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.222;ClippingRankSum=0.000;DP=104;ExcessHet=3.0103;FS=2.178;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.489;QD=2.42;ReadPosRankSum=0.199;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:55,23:0.29:78
chr6	132043349	rs378697	A	T	5911.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr6	132113403	rs9493099	T	C	7084.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr6	132168996	rs67733446	GGT	G	53.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.132;ClippingRankSum=-0.000;DB;DP=30;ExcessHet=3.0103;FS=2.027;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.84;ReadPosRankSum=1.013;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:8,6:0.43:14
chr6	132270728	rs59140114	GA	G	231.19	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.819;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.39;MQRankSum=0.530;QD=12.84;ReadPosRankSum=-0.633;SOR=0.368;set=HC	GT:AD:AF:DP	1/1:2,16:0.89:18
chr6	132271952	rs7451102	G	C	5719.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.69;SOR=0.824;set=HC	GT:AD:AF:DP	1/1:0,128:1.00:128
chr6	132271959	rs12206231	T	G	5719.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.04;SOR=0.879;set=HC	GT:AD:AF:DP	1/1:0,127:1.00:127
chr6	132271980	rs6934749	T	G	2634.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:1,99:0.99:100
chr6	132785224	rs3757299	A	C	8580.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:3,317:0.99:320
chr6	132796922	.	A	ACTTTGTTTTCCAG	309.75	.	AC=2;AF=1.00;ALERT;AN=2;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr6	132796923	.	TA	T	309.75	.	AC=2;AF=1.00;ALERT;AN=2;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr6	132892506	rs7772821	T	G	1004.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr6	132910612	rs3813355	G	A	7876.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr6	132929904	rs3813352	C	T	12656.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.185;ClippingRankSum=0.000;DB;DP=296;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=43.49;ReadPosRankSum=-0.859;SOR=0.832;set=HC	GT:AD:AF:DP	1/1:2,289:0.99:291
chr6	132929911	rs3813351	A	G	12598.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.193;ClippingRankSum=0.000;DB;DP=293;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=43.75;ReadPosRankSum=-0.823;SOR=0.795;set=HC	GT:AD:AF:DP	1/1:2,286:0.99:288
chr6	132930158	rs35751778	T	C	9959.77	.	AC=2;AF=1.00;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	1/1:0,363:1.00:363
chr6	132930277	rs35927289	G	A	3107.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr6	133045812	rs2294758	G	A	5810.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr6	133045902	rs2294759	A	G	6952.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr6	133048213	rs9493417	G	A	838.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr6	133052616	rs4895943	C	T	6432.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:2,250:0.99:252
chr6	133055610	rs764262	G	T	11339.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.30;SOR=0.757;set=HC	GT:AD:AF:DP	1/1:0,256:1.00:256
chr6	133055610	.	GGG	TGC	2947	.	AC=2;AF=1.00;AN=2;BRF=0.41;FR=1.0000;HP=4;HapScore=1;MGOF=2;MMLQ=27;MQ=60.0;NF=92;NR=89;PP=2947;QD=20;SC=AAGTATAAAAGGGTAATACCT;SbPval=0.55;Source=Platypus;TC=186;TCF=95;TCR=91;TR=181;WE=133055620;WS=133055600;set=Platypus	GT:AD:AF:DP	1/1:5,181:0.97:186
chr6	133055612	rs764263	G	C	11339.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.36;SOR=0.759;set=HC	GT:AD:AF:DP	1/1:0,250:1.00:250
chr6	133070995	rs4895944	G	T	5387.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr6	133072650	rs1883617	A	G	3774.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr6	133074645	rs9493425	A	G	3618.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.48;SOR=1.011;set=HC	GT:AD:AF:DP	1/1:0,142:1.00:142
chr6	133074663	rs9493426	T	C	3221.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr6	133077063	rs1883613	T	C	4659.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr6	133079136	rs3901670	A	T	1037.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr6	133093231	rs200939302	CA	C	61.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.445;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.12;ReadPosRankSum=0.173;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:38,17:0.31:55
chr6	133135807	rs9493450	C	T	5890.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr6	133135864	rs12202302	T	G	8587.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr6	133135886	rs9483504	A	G	9073.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,326:1.00:326
chr6	133136041	rs9493451	C	G	2590.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr6	133136985	.	C	CT	106.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.318;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;FS=8.211;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.44;ReadPosRankSum=-0.372;SOR=0.062;set=HC	GT:AD:AF:DP	0/1:20,11:0.35:31
chr6	133137111	rs3778174	C	T	733.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr6	133138010	rs9389034	T	C	6791.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr6	133138067	rs371269086	ATTT	A,AT	2675.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=128;set=Intersection	GT:AF:DP	1/2:0.20,0.70:108
chr6	133827148	rs6929656	T	C	1079.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.99;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr6	134304023	rs2076583	C	T	1795.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:2,68:0.97:70
chr6	134327815	rs2811676	C	T	748.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr6	134494548	rs1743965	C	T	4884.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr6	134536272	.	C	CTTTCT	216.06	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.429;ClippingRankSum=0.000;DP=29;ExcessHet=3.0103;FS=7.656;MLEAC=2;MLEAF=1.000;MQ=62.92;MQRankSum=0.761;QD=12.00;ReadPosRankSum=0.713;SOR=2.399;set=HC	GT:AD:AF:DP	1/1:3,15:0.83:18
chr6	134536309	rs4896026	G	A	244.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr6	135271328	rs4646870	C	A	2726.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:1,95:0.99:96
chr6	135286438	rs35078158	CA	C	765.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:2,43:0.96:45
chr6	135286505	rs13199205	T	C	493.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr6	135287533	rs13064	A	G	6093.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr6	135290355	rs35571217	T	C	1458.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr6	135299713	rs9376077	C	G	827.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr6	135299959	rs13214669	T	C	3993.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr6	135307740	rs4376365	T	C	444.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr6	135314182	rs7741626	C	T	1272.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr6	135314265	rs7761964	T	C	1305.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.12;SOR=0.773;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr6	135318854	rs4895439	A	T	1036.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr6	135324051	rs45544135	T	C	852.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr6	135324052	rs140431690	TTTAAA	T	843.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr6	135358567	rs7742542	T	G	2216.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr6	135375762	rs2297338	G	A	12347.77	.	AC=2;AF=1.00;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	1/1:0,465:1.00:465
chr6	135424179	rs35959442	C	G	4916.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr6	135424203	rs6930223	G	T	4791.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr6	135511108	rs210796	A	T	1495.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr6	135522939	rs743589	T	C	968.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr6	135523774	rs7762830	A	G	420.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr6	135524516	rs9385719	A	G	6591.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.617;ClippingRankSum=0.000;DB;DP=269;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.12;MQRankSum=0.164;QD=25.26;ReadPosRankSum=-1.152;SOR=0.904;set=HC	GT:AD:AF:DP	1/1:2,259:0.99:261
chr6	135524520	rs113909655	T	TTGG	8361.73	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:6,196:0.97:202
chr6	135524553	rs9402696	C	T	5036.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:2,195:0.99:197
chr6	135539103	rs35664708	G	A	4991.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr6	135639644	rs6914831	C	T	1182.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr6	135748200	rs2757639	A	G	330.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr6	135748451	rs41288015	T	C	809.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr6	135752608	rs2614270	T	C	282.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr6	135754471	rs737561	C	T	656.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr6	135763585	rs2614274	T	C	591.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr6	135763866	rs2757645	G	A	1236.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr6	135813251	rs9402709	G	T	215.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr6	136172996	.	CT	C	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.853;ClippingRankSum=0.000;DP=105;ExcessHet=3.0103;FS=1.086;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.34;ReadPosRankSum=-0.393;SOR=0.992;set=HC	GT:AD:AF:DP	0/1:80,18:0.18:98
chr6	136472185	rs35539959	G	GA	1353.73	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr6	136472439	rs4896201	G	A	2868.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr6	136472496	rs4896202	T	G	1143.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr6	136582092	rs62431280	C	A	45.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:5,3:0.38:8
chr6	136582113	rs62431281	A	C	96.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:8,5:0.38:13
chr6	136582194	rs141067744	T	TAAA	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.630;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=2.667;MLEAC=1;MLEAF=0.500;MQ=59.37;MQRankSum=-2.006;QD=2.22;ReadPosRankSum=0.821;SOR=1.460;set=HC	GT:AD:AF:DP	0/1:14,3:0.18:17
chr6	136582203	rs74299323	T	C	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.396;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=2.682;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=-2.453;QD=1.64;ReadPosRankSum=0.320;SOR=1.501;set=HC	GT:AD:AF:DP	0/1:20,3:0.13:23
chr6	136582417	rs62431283	G	A	639.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:90,33:0.27:123
chr6	136582497	rs62431284	G	T	6426.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.538;ClippingRankSum=0.000;DB;DP=603;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.78;MQRankSum=-8.950;QD=11.35;ReadPosRankSum=3.549;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:263,303:0.54:566
chr6	136589425	rs77081633	G	T	402.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.877;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=17.890;MLEAC=1;MLEAF=0.500;MQ=45.51;MQRankSum=-3.033;QD=5.75;ReadPosRankSum=1.534;SOR=3.214;set=HC	GT:AD:AF:DP	0/1:51,19:0.27:70
chr6	136590613	rs62431285	T	C	771.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.210;ClippingRankSum=0.000;DB;DP=225;ExcessHet=3.0103;FS=1.998;MLEAC=1;MLEAF=0.500;MQ=57.99;MQRankSum=-5.931;QD=3.71;ReadPosRankSum=-0.480;SOR=0.539;set=HC	GT:AD:AF:DP	0/1:153,55:0.26:208
chr6	136590640	rs62431286	A	C	1262.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.314;ClippingRankSum=0.000;DB;DP=303;ExcessHet=3.0103;FS=1.584;MLEAC=1;MLEAF=0.500;MQ=58.25;MQRankSum=-6.844;QD=4.43;ReadPosRankSum=1.202;SOR=0.810;set=HC	GT:AD:AF:DP	0/1:199,86:0.30:285
chr6	136590698	rs62431287	C	T	1396.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.750;ClippingRankSum=0.000;DB;DP=398;ExcessHet=3.0103;FS=19.759;MLEAC=1;MLEAF=0.500;MQ=58.61;MQRankSum=-8.206;QD=3.68;ReadPosRankSum=-0.368;SOR=1.170;set=HC	GT:AD:AF:DP	0/1:279,101:0.27:380
chr6	136590712	rs62431288	C	T	1198.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.534;ClippingRankSum=0.000;DB;DP=400;ExcessHet=3.0103;FS=17.715;MLEAC=1;MLEAF=0.500;MQ=58.70;MQRankSum=-8.266;QD=3.15;ReadPosRankSum=-4.127;SOR=1.171;set=HC	GT:AD:AF:DP	0/1:287,93:0.24:380
chr6	136595439	rs5880289	T	TA	171	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.650;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=4.559;MLEAC=1;MLEAF=0.500;MQ=60.51;MQRankSum=0.641;QD=10.69;ReadPosRankSum=2.819;SOR=2.985;set=HC	GT:AD:AF:DP	0/1:3,13:0.81:16
chr6	136597004	rs7762367	A	G	552.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.931;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=10.201;MLEAC=1;MLEAF=0.500;MQ=59.35;MQRankSum=-4.359;QD=3.48;ReadPosRankSum=0.635;SOR=1.552;set=HC	GT:AD:AF:DP	0/1:120,39:0.25:159
chr6	136597262	rs1967444	T	C	6788.77	.	AC=1;AF=0.500;AN=2;DB;DP=574;set=Intersection	GT:AD:AF:DP	0/1:257,308:0.55:565
chr6	136597281	rs1967445	A	T	12215.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.752;ClippingRankSum=0.000;DB;DP=588;ExcessHet=3.0103;FS=2.458;MLEAC=1;MLEAF=0.500;MQ=59.81;MQRankSum=1.573;QD=21.13;ReadPosRankSum=-0.365;SOR=0.889;set=HC	GT:AD:AF:DP	0/1:259,319:0.55:578
chr6	136597288	rs1967446	A	C	12272.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.719;ClippingRankSum=0.000;DB;DP=592;ExcessHet=3.0103;FS=1.112;MLEAC=1;MLEAF=0.500;MQ=59.81;MQRankSum=1.581;QD=21.12;ReadPosRankSum=-0.095;SOR=0.794;set=HC	GT:AD:AF:DP	0/1:259,322:0.55:581
chr6	136598895	rs58951987	T	TA	227.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr6	136599393	rs6940018	G	C	8197.77	.	AC=1;AF=0.500;AN=2;DB;DP=616;set=Intersection	GT:AD:AF:DP	0/1:260,346:0.57:606
chr6	136599404	rs6919254	T	C	7374.77	.	AC=1;AF=0.500;AN=2;DB;DP=607;MQ=59.97;set=Intersection	GT:AD:AF:DP	0/1:250,342:0.58:592
chr6	136599822	rs9942517	C	G	1223.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.556;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=4.288;MLEAC=1;MLEAF=0.500;MQ=58.46;MQRankSum=-3.244;QD=9.71;ReadPosRankSum=0.776;SOR=0.778;set=HC	GT:AD:AF:DP	0/1:66,60:0.48:126
chr6	136599836	rs9942518	G	A	2124.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.471;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=2.246;MLEAC=1;MLEAF=0.500;MQ=58.50;MQRankSum=-3.497;QD=16.34;ReadPosRankSum=1.990;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:73,57:0.44:130
chr6	136599842	rs9942519	G	A	2091.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.203;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=3.145;MLEAC=1;MLEAF=0.500;MQ=58.57;MQRankSum=-3.621;QD=15.73;ReadPosRankSum=2.202;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:77,56:0.42:133
chr6	136599910	.	T	TGTATCGCTTCTTTCTAGAATGAGATCTTGATCTTGATCG	312.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.224;ClippingRankSum=0.000;DP=105;ExcessHet=3.0103;FS=32.266;MLEAC=1;MLEAF=0.500;MQ=58.65;MQRankSum=-4.632;QD=3.59;ReadPosRankSum=-3.906;SOR=5.155;set=HC	GT:AD:AF:DP	0/1:73,14:0.16:87
chr6	136681291	rs200986298	CT	C	176.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.935;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=2.764;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=0.808;QD=6.80;ReadPosRankSum=-0.971;SOR=0.250;set=HC	GT:AD:AF:DP	0/1:9,17:0.65:26
chr6	136682172	rs2076190	G	A	2635.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr6	136698697	rs2076192	C	A	656.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr6	136710669	rs58458173	TA	T	255.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.087;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=1.944;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.97;ReadPosRankSum=0.489;SOR=0.466;set=HC	GT:AD:AF:DP	0/1:86,44:0.34:130
chr6	136847116	.	G	GT	73.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.230;ClippingRankSum=0.000;DP=85;ExcessHet=3.0103;FS=2.855;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.25;ReadPosRankSum=-0.256;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:45,14:0.24:59
chr6	136913666	.	T	TGTC	8481.73	.	AC=2;AF=1.00;AN=2;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr6	136914852	.	CAA	C	117.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.447;ClippingRankSum=0.000;DP=31;ExcessHet=3.0103;FS=1.707;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.20;ReadPosRankSum=2.737;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:18,10:0.36:28
chr6	136990283	rs3765259	T	C	673.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr6	137041833	rs1321477	C	T	4817.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr6	137193320	.	C	CT	55.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.023;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=1.250;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.05;ReadPosRankSum=-1.127;SOR=0.963;set=HC	GT:AD:AF:DP	0/1:41,12:0.23:53
chr6	137325847	rs1555498	C	T	5082.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.61;SOR=0.746;set=HC	GT:AD:AF:DP	1/1:0,191:1.00:191
chr6	137325901	rs5880323	TA	T	945.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.274;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=4.136;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.51;ReadPosRankSum=-0.838;SOR=1.036;set=HC	GT:AD:AF:DP	0/1:16,74:0.82:90
chr6	137338276	rs433243	A	G	5445.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr6	137338352	rs451371	G	T	3349.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.08;SOR=2.012;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr6	137338357	rs442663	A	G	3316.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.82;SOR=1.949;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr6	137524870	rs34561084	GA	G	77.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.496;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=4.051;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.87;ReadPosRankSum=2.376;SOR=1.289;set=HC	GT:AD:AF:DP	0/1:68,21:0.24:89
chr6	138195961	rs71670547	TCTC	T	1458.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.92;QD=42.90;SOR=2.899;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr6	138197331	rs661561	A	C	3989.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr6	138417408	rs76259604	C	T	1276.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr6	138745178	rs41289795	G	A	492.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr6	138745299	rs9495082	G	A	4254.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr6	138752679	.	CAGG	C	127.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.326;ClippingRankSum=0.000;DP=73;ExcessHet=3.0103;FS=1.497;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.97;ReadPosRankSum=0.510;SOR=1.158;set=HC	GT:AD:AF:DP	0/1:57,8:0.12:65
chr6	138754323	rs2327891	A	G	5358.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr6	138768408	rs2277087	A	T	132.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr6	138817584	rs117313379	C	T	168.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr6	138820271	.	G	GAC	738.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.215;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.52;ReadPosRankSum=1.392;SOR=0.965;set=HC	GT:AD:AF:DP	0/1:7,29:0.81:36
chr6	139085450	rs4243458	C	T	255.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.58;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr6	139114113	rs6570282	A	G	391.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr6	139134558	rs1919691	C	T	1019.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:1,38:0.97:39
chr6	139183879	rs12204850	G	A	4569.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr6	139184044	rs1188827	C	G	455.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr6	139186457	rs12198757	C	T	473.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr6	139202014	rs1157050	G	C	600.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr6	139207910	rs1188831	C	T	638.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr6	139229695	rs1188867	A	G	1220.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr6	139229743	rs1188868	C	T	2576.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr6	139265882	rs1188897	T	A	884.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr6	139456761	rs185694700	T	C	169.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.22;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr6	139487836	rs3173082	T	C	11274.77	.	AC=2;AF=1.00;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	1/1:0,406:1.00:406
chr6	139563914	rs9495391	C	G	4324.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr6	139598061	rs66961117	TA	T	720.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:4,42:0.91:46
chr6	139610124	rs55712380	G	T	596.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr6	139695061	rs1131400	G	T	1732.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr6	141004964	rs5880480	G	GT	1694.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr6	141005059	rs4535568	G	A	1675.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr6	142384082	rs6907175	G	A	914.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr6	142396790	rs7453944	G	T	5447.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:5,213:0.98:218
chr6	142489579	rs761155	C	T	423.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:1,18:0.95:19
chr6	142490146	rs6931975	T	C	380.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr6	142491463	rs11446143	C	CG	933.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr6	142691950	rs71643377	CT	C	226.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.157;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=0.959;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.342;QD=2.61;ReadPosRankSum=-0.153;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:56,31:0.36:87
chr6	142718801	rs989946	G	A	8545.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:2,311:0.99:313
chr6	142758631	rs1262686	A	G	4177.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr6	143091263	rs109836	A	G	5144.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr6	143382245	.	C	CTG	2265	.	AC=1;AF=0.500;AN=2;FR=0.5000;HP=1;HapScore=1;MGOF=10;MMLQ=24;MQ=59.71;NF=23;NR=16;PP=2265;QD=58.6666666667;SC=CACCCCGTGCCTGTGTGTGCG;SbPval=0.21;Source=Platypus;TC=115;TCF=55;TCR=60;TR=39;WE=143382268;WS=143382235;set=Platypus	GT:AD:AF:DP	0/1:76,39:0.34:115
chr6	143382252	.	TGC	T	181.73	.	AC=1;AF=0.500;ALERT;AN=2;DP=157;set=Intersection	GT:AD:AF:DP	0/1:98,18:0.16:116
chr6	143382254	.	C	T	1904.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-3.052;ClippingRankSum=0.000;DP=159;ExcessHet=3.0103;FS=3.814;MLEAC=1;MLEAF=0.500;MQ=59.72;MQRankSum=0.000;QD=15.87;ReadPosRankSum=1.563;SOR=0.396;set=HC	GT:AD:AF:DP	0/1:45,75:0.62:120
chr6	143382254	.	CGT	C	2288	.	AC=1;AF=0.500;AN=2;FR=0.5000;HP=2;HapScore=1;MGOF=10;MMLQ=21;MQ=59.59;NF=14;NR=16;PP=2288;QD=76.3666666667;SC=CCTGTGTGTGCGTGTGTGTGT;SbPval=0.35;Source=Platypus;TC=102;TCF=41;TCR=61;TR=30;WE=143382268;WS=143382235;set=Platypus	GT:AD:AF:DP	0/1:72,30:0.29:102
chr6	143382256	.	T	C	1574.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.283;ClippingRankSum=0.000;DP=158;ExcessHet=3.0103;FS=4.927;MLEAC=1;MLEAF=0.500;MQ=59.72;MQRankSum=0.000;QD=14.72;ReadPosRankSum=2.537;SOR=0.345;set=HC	GT:AD:AF:DP	0/1:45,62:0.58:107
chr6	143382258	.	T	C	190.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.928;ClippingRankSum=0.000;DP=156;ExcessHet=3.0103;FS=2.172;MLEAC=1;MLEAF=0.500;MQ=59.71;MQRankSum=1.077;QD=1.63;ReadPosRankSum=0.359;SOR=0.410;set=HC	GT:AD:AF:DP	0/1:99,18:0.15:117
chr6	143486138	rs140037174	C	T	989.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:2,36:0.95:38
chr6	143605472	rs9403480	G	T	569.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr6	143654625	rs2303386	C	T	3411.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr6	143656260	.	A	G	3983.77	.	AC=2;AF=1.00;AN=2;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr6	144032317	rs2488101	A	G	1201.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr6	144033366	rs3762004	G	A	1675.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:2,62:0.97:64
chr6	144069984	rs33958582	GT	G	99.80	.	AC=2;AF=1.00;AN=2;DB;DP=6;MQ=61.78;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr6	144086394	rs9496767	G	A	1883.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr6	144104142	rs144077213	A	ATGTG	96.25	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.08;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr6	144104469	rs1012753	A	T	341.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.10;SOR=3.383;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr6	144758647	.	CT	C	43.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.107;ClippingRankSum=0.000;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=2.000;QD=0.31;ReadPosRankSum=1.570;SOR=0.597;set=HC	GT:AD:AF:DP	0/1:113,26:0.19:139
chr6	144765301	rs190731718	T	C	925.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr6	144814625	rs368319861	GTC	G	134.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.860;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.59;ReadPosRankSum=0.303;SOR=0.458;set=HC	GT:AD:AF:DP	0/1:43,9:0.17:52
chr6	144843072	.	GAT	G	187	.	AC=1;AF=0.500;AN=2;BRF=0.3;FR=0.5000;HP=2;HapScore=3;MGOF=17;MMLQ=23;MQ=60.57;NF=9;NR=4;PP=187;QD=14.8461538462;SC=TATTTTAAGAGATATATATAT;SbPval=0.55;Source=Platypus;TC=24;TCF=17;TCR=7;TR=13;WE=144843081;WS=144843062;set=Platypus	GT:AD:AF:DP	0/1:11,13:0.54:24
chr6	145021193	rs140389119	GTTA	G	111.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.417;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.31;ReadPosRankSum=0.846;SOR=0.486;set=HC	GT:AD:AF:DP	0/1:76,9:0.11:85
chr6	145051594	rs4305737	G	A	1744.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr6	145069287	rs7756909	C	T	801.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr6	145075724	rs4896740	C	T	278.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr6	145076046	rs4243472	C	G	949.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.17;SOR=6.273;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr6	145076046	.	CCT	GCA	450	.	AC=2;AF=1.00;AN=2;BRF=0.3;FR=1.0000;HP=1;HapScore=1;MGOF=0;MMLQ=28;MQ=60.0;NF=0;NR=18;PP=450;QD=27.9704374923;SC=TTAGATAGATCCTTGTAAGGA;SbPval=1.0;Source=Platypus;TC=19;TCF=0;TCR=19;TR=18;WE=145076056;WS=145076036;set=Platypus	GT:AD:AF:DP	1/1:1,18:0.95:19
chr6	145076048	rs4243473	T	A	949.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.23;SOR=6.184;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr6	145079197	rs9283116	T	C	1881.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr6	145095545	rs10650309	G	GT	973.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.573;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=14.53;ReadPosRankSum=-0.987;SOR=0.653;set=HC	GT:AD:AF:DP	1/1:8,59:0.88:67
chr6	145114935	rs4243475	A	G	3583.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr6	145120682	rs9376859	A	G	2179.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr6	145148690	rs2066054	A	C	3970.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr6	146007166	rs702322	G	A	443.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr6	146012061	rs2142978	T	C	708.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr6	146056476	rs2235482	G	C	2612.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.94;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr6	146056681	rs111332144	C	T	216.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr6	146112348	rs6931553	T	C	832.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr6	146234644	rs9497426	G	A	1442.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr6	146242676	rs11326222	GT	G	309.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.799;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=2.543;MLEAC=1;MLEAF=0.500;MQ=60.48;MQRankSum=0.949;QD=9.68;ReadPosRankSum=-1.906;SOR=2.147;set=HC	GT:AD:AF:DP	0/1:9,23:0.72:32
chr6	146243581	rs6917482	C	T	402.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr6	146244081	rs34616835	G	GT	318.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.278;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.66;ReadPosRankSum=2.875;SOR=0.544;set=HC	GT:AD:AF:DP	0/1:10,23:0.70:33
chr6	146244743	rs6923545	A	G	1815.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr6	146254100	rs55757353	T	TC	190.27	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.253;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=19.03;ReadPosRankSum=1.036;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:1,9:0.90:10
chr6	146256060	.	G	T	3008.77	.	AC=2;AF=1.00;AN=2;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr6	146262697	rs9285508	G	T	7140.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr6	146268623	rs9386141	T	A	2577.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr6	146273769	rs9386142	C	T	199.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr6	146480740	rs72225459	TTC	T	178.70	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.967;ClippingRankSum=-0.000;DB;DP=24;ExcessHet=3.0103;FS=4.771;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=19.86;ReadPosRankSum=0.282;SOR=1.739;set=HC	GT:AD:AF:DP	1/1:1,8:0.89:9
chr6	146678929	rs362893	T	C	973.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr6	146678952	rs362894	A	G	870.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr6	146678953	rs35301667	G	GT	861.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr6	146975204	rs12205484	T	C	752.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr6	146975456	rs71778473	TTA	T	184.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.833;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.46;ReadPosRankSum=-0.260;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:63,12:0.16:75
chr6	147022227	rs41285871	G	T	5452.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr6	147103358	rs1325701	A	G	3444.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr6	147103416	rs259405	C	T	1608.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr6	147106841	rs259391	A	G	5117.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr6	147136244	rs259370	A	G	3878.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr6	147631201	rs6928919	A	G	1755.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr6	147631421	rs11415538	T	TA	269.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.080;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=1.459;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.49;ReadPosRankSum=0.728;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:16,20:0.56:36
chr6	147635318	rs5880705	T	TAC	942.73	.	AC=1;AF=0.500;AN=2;DB;DP=57;MQ=60.19;set=Intersection	GT:AD:AF:DP	0/1:13,36:0.73:49
chr6	147635385	rs1039083	C	G	3593.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:2,89:0.98:91
chr6	147635413	rs1039084	A	G	3964.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:2,100:0.98:102
chr6	147635547	rs1039085	C	T	800.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr6	147680359	rs9390459	A	G	7119.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:2,263:0.99:265
chr6	148051210	.	C	CAA	343.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.981;ClippingRankSum=-0.000;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.98;MQRankSum=-0.000;QD=11.09;ReadPosRankSum=-0.905;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:7,24:0.77:31
chr6	148664404	rs55914407	G	A	7643.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:2,289:0.99:291
chr6	148701197	rs4897000	A	G	1800.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr6	148710092	.	TA	T	69.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.181;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.99;ReadPosRankSum=1.099;SOR=0.483;set=HC	GT:AD:AF:DP	0/1:23,12:0.34:35
chr6	148761456	rs2272998	G	C	4858.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr6	148761603	rs9498038	C	A	607.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr6	148853867	rs1465307	T	C	3102.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr6	148854870	rs41288415	G	C	333.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr6	148861716	rs6909677	G	A	5932.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr6	149340390	rs2275423	G	C	5824.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr6	149718577	rs375953182	CA	C	218.92	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.441;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.98;MQRankSum=0.712;QD=10.95;ReadPosRankSum=0.722;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:3,17:0.85:20
chr6	149718650	rs237028	C	T	2719.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr6	149721690	rs237025	G	A	8703.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:0,325:1.00:325
chr6	149772645	rs415434	A	G	3969.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr6	149780695	rs384163	T	C	956.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr6	149780737	rs140859	G	GACTA	2153.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr6	149782798	rs411091	G	A	435.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr6	149782847	rs411308	G	A	857.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr6	149782908	rs376757	A	G	2199.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr6	149795261	rs382720	T	C	755.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr6	149842148	.	CAA	C	42.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.276;ClippingRankSum=0.000;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.29;ReadPosRankSum=0.491;SOR=0.404;set=HC	GT:AD:AF:DP	0/1:27,6:0.18:33
chr6	149953835	rs9322202	A	G	2341.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr6	149983216	rs3924871	G	A	4216.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr6	149997657	rs62439843	T	C	1092.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.76;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr6	150004779	rs3798761	A	G	9197.77	.	AC=2;AF=1.00;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	1/1:2,352:0.99:354
chr6	150023348	rs4870509	C	G	1809.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr6	150039148	rs12174349	G	A	3338.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr6	150052698	.	T	TA	321.37	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.325;ClippingRankSum=0.000;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=0.674;QD=8.03;ReadPosRankSum=-0.434;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:12,28:0.70:40
chr6	150064733	rs34447002	CA	C	170.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.279;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.07;MQRankSum=0.845;QD=8.99;ReadPosRankSum=-0.750;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:4,15:0.79:19
chr6	150064968	rs58509133	C	CT	1258.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr6	150064977	rs1572229	T	A	1261.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr6	150067675	rs10872646	A	G	10260.77	.	AC=2;AF=1.00;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	1/1:0,378:1.00:378
chr6	150093678	rs3805748	C	T	8861.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.76;SOR=0.843;set=HC	GT:AD:AF:DP	1/1:0,198:1.00:198
chr6	150093682	rs3805749	C	T	8880.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.427;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=44.40;ReadPosRankSum=2.350;SOR=0.281;set=HC	GT:AD:AF:DP	1/1:1,199:0.99:200
chr6	150094152	.	GAA	G	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.204;ClippingRankSum=0.000;DP=18;ExcessHet=3.0103;FS=2.622;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.11;ReadPosRankSum=-1.168;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:11,5:0.31:16
chr6	150114606	rs12182220	C	T	603.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr6	150114745	rs4816	G	A	3175.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr6	150123316	rs11297063	CT	C	1462.73	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:6,87:0.94:93
chr6	150163911	rs2275045	T	C	4135.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr6	150164378	rs2184370	G	A	5760.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr6	150184882	rs9322225	G	C	2281.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr6	150209196	rs9968871	G	A	4730.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.63;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,106:1.00:106
chr6	150209204	rs9969044	A	G	4821.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.24;SOR=1.200;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr6	150209309	rs9322228	C	G	3944.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr6	150209432	rs7774787	G	A	1373.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr6	150209717	rs2342767	C	G	7725.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr6	150209805	rs10671072	T	TAAAA	1033.76	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.730;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=3.713;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.46;ReadPosRankSum=-0.948;SOR=1.721;set=HC	GT:AD:AF:DP	0/1:13,43:0.77:56
chr6	150209828	rs2342768	A	G	1884.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr6	150209849	rs5880858	TA	T	614.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr6	150210681	rs9371533	G	A	10221.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.931;ClippingRankSum=0.000;DB;DP=238;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=43.68;ReadPosRankSum=-1.459;SOR=1.028;set=HC	GT:AD:AF:DP	1/1:2,232:0.99:234
chr6	150210685	rs9383921	C	T	10207.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.950;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=44.00;ReadPosRankSum=-0.416;SOR=1.054;set=HC	GT:AD:AF:DP	1/1:2,230:0.99:232
chr6	150210723	rs6925151	C	T	4416.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:2,159:0.99:161
chr6	150210802	rs6933882	A	G	2280.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr6	150210994	rs6939761	T	C	1994.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.49;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr6	150210999	rs3823021	G	C	1994.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.36;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr6	150211100	rs3798763	T	C	3166.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:2,118:0.98:120
chr6	150211123	rs2151910	A	T	3202.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr6	150263186	rs4343924	A	C	14573.77	.	AC=2;AF=1.00;AN=2;DB;DP=540;set=Intersection	GT:AD:AF:DP	1/1:0,535:1.00:535
chr6	150267527	rs2282235	A	C	11489.77	.	AC=2;AF=1.00;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	1/1:1,407:1.00:408
chr6	150269778	rs6940581	A	G	4015.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:2,147:0.99:149
chr6	150322211	rs9397541	C	T	5621.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr6	150322381	rs9384023	T	A	1886.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr6	150341990	rs9397120	A	G	8417.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.64;QD=45.75;SOR=1.729;set=HC	GT:AD:AF:DP	1/1:0,184:1.00:184
chr6	150341993	rs9384047	C	A	8482.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.85;QD=43.95;SOR=1.647;set=HC	GT:AD:AF:DP	1/1:0,193:1.00:193
chr6	150342396	rs9479414	G	C	3216.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.438;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=10.000;MLEAC=2;MLEAF=1.000;MQ=43.88;MQRankSum=1.839;QD=32.17;ReadPosRankSum=-0.456;SOR=4.420;set=HC	GT:AD:AF:DP	1/1:1,99:0.99:100
chr6	150343211	rs202055124	A	G	1191.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.94;QD=30.56;SOR=3.967;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr6	150346740	rs1544123	A	G	1361.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr6	150387302	rs669009	A	T	5222.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.81;SOR=1.115;set=HC	GT:AD:AF:DP	1/1:0,122:1.00:122
chr6	150387312	rs6935471	A	G	4881.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.38;SOR=1.274;set=HC	GT:AD:AF:DP	1/1:0,110:1.00:110
chr6	150390213	rs139986011	G	A	4509.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:2,170:0.99:172
chr6	150390313	rs622317	G	C	856.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr6	150570063	.	G	GT	371.73	.	AC=2;AF=1.00;AN=2;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.59;SOR=2.494;set=HC	GT:AD:AF:DP	1/1:1,19:0.95:20
chr6	150713769	rs672766	C	T	396.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr6	150716696	rs612421	T	C	3300.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr6	151121760	rs2073062	T	C	1614.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr6	151121915	rs2073061	G	A	4705.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr6	151122094	rs2073060	A	G	430.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr6	151125710	rs71786784	G	GA	283.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.933;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.902;MLEAC=1;MLEAF=0.500;MQ=60.50;MQRankSum=2.894;QD=3.38;ReadPosRankSum=-0.104;SOR=0.545;set=HC	GT:AD:AF:DP	0/1:56,28:0.33:84
chr6	151125723	.	AC	A	485	.	AC=2;AF=1.00;AN=2;BRF=0.43;FR=1.0000;HP=12;HapScore=4;MGOF=9;MMLQ=24;MQ=60.04;NF=13;NR=12;PP=485;QD=19.6;SC=AAAAAAAAAAACCCTCGTTCT;SbPval=0.42;Source=Platypus;TC=64;TCF=30;TCR=34;TR=25;WE=151125732;WS=151125700;set=Platypus	GT:AD:AF:DP	1/1:39,25:0.39:64
chr6	151125724	rs803432	C	A	1671.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.172;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.41;MQRankSum=0.752;QD=19.22;ReadPosRankSum=-1.192;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:10,77:0.89:87
chr6	151125896	rs712218	G	A	1849.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr6	151142261	rs803387	T	C	2032.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr6	151152656	rs803411	T	C	7758.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr6	151209250	rs147618948	A	G	456.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr6	151219963	rs149723194	G	GATTATT	520.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr6	151220245	rs803419	A	G	465.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr6	151247439	rs803455	A	G	1972.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr6	151258127	rs742830	G	A	1542.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr6	151259770	rs6933598	C	G	826.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr6	151260002	rs3734416	T	C	2408.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr6	151266504	rs803445	C	T	665.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr6	151266717	rs803444	G	A	1018.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr6	151270369	rs803471	G	A	2205.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr6	151281567	rs1771798	T	C	2635.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr6	151281707	rs1771796	A	G	229.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr6	151285993	rs117559482	G	T	1392.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr6	151286224	rs1627462	A	C	5485.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr6	151413828	rs2295734	C	A	1101.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr6	151561921	rs5880922	TG	T	110.87	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.17;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr6	151626774	rs9397388	T	G	1824.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr6	151627034	rs2294792	A	G	2324.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr6	151627096	rs2294793	C	T	1110.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr6	151665302	rs6941075	T	A	315.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr6	151669459	rs376944975	CAAAA	C	773.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.836;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.29;MQRankSum=0.417;QD=32.24;ReadPosRankSum=0.506;SOR=0.257;set=HC	GT:AD:AF:DP	1/1:1,23:0.96:24
chr6	151669875	rs10872670	A	G	1731.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr6	151670172	rs3734799	A	C	4191.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr6	151670897	rs900654	T	C	4032.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr6	151674116	rs3842128	T	TGAG	17008.73	.	AC=2;AF=1.00;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	1/1:2,373:0.99:375
chr6	151674326	rs3823310	A	C	5947.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr6	151686905	rs11155787	C	T	10802.77	.	AC=2;AF=1.00;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	1/1:0,394:1.00:394
chr6	151742541	rs4870017	T	C	1836.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr6	151743629	rs6912830	A	C	803.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:1,30:0.97:31
chr6	151754273	rs6904364	T	C	12564.77	.	AC=2;AF=1.00;AN=2;DB;DP=479;set=Intersection	GT:AD:AF:DP	1/1:0,473:1.00:473
chr6	151773504	rs13201167	T	C	3235.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr6	151859146	rs71677524	GT	G	1382.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.359;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=0.732;QD=11.43;ReadPosRankSum=-0.604;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:21,100:0.83:121
chr6	151869645	rs3734803	G	A	3191.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr6	151894278	rs4242277	G	T	726.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr6	151894340	rs12205837	C	T	1105.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr6	151894505	rs953767	T	C	2775.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr6	151894716	rs1807906	G	A	1127.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr6	152201875	rs4986934	T	C	3688.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr6	152265282	rs55740371	A	AT	2463.73	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:6,113:0.95:119
chr6	152265522	rs1801132	G	C	5984.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr6	152461048	rs147380321	CTGTT	C	1410.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr6	152461061	rs3818110	G	A	1516.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr6	152489294	rs998147	T	C	4462.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr6	152534946	rs684807	T	A	1242.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr6	152539326	.	C	CA	69.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.346;ClippingRankSum=0.000;DP=37;ExcessHet=3.0103;FS=3.712;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.05;ReadPosRankSum=-0.901;SOR=0.227;set=HC	GT:AD:AF:DP	0/1:25,9:0.26:34
chr6	152539572	.	T	TA	1042.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.483;ClippingRankSum=0.000;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=0.000;QD=12.56;ReadPosRankSum=1.145;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:21,62:0.75:83
chr6	152540278	rs2147377	A	C	1394.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr6	152545865	rs17082358	T	C	917.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr6	152552375	rs2274142	G	A	921.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr6	152558197	rs11751190	G	A	266.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr6	152565897	rs3888239	T	C	1626.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr6	152570415	rs6557210	G	A	4839.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr6	152629586	rs9371581	G	A	4245.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr6	152629815	rs4112833	C	T	568.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr6	152631256	rs11292345	CA	C	847.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr6	152631265	rs34118755	A	G	856.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr6	152647681	rs2306916	A	T	4413.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr6	152652034	rs6911096	A	T	4276.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr6	152658142	rs9479297	T	C	3627.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr6	152658191	rs9479298	T	C	2767.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr6	152660451	rs71575926	G	A	3489.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr6	152665261	rs4645434	C	A	1916.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr6	152665464	rs35003170	TC	T	632.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr6	152671475	rs9478320	A	C	5000.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr6	152671553	rs9478321	A	G	2687.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr6	152671919	rs5880967	G	GA	3596.73	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:6,159:0.96:165
chr6	152671975	rs1387549	A	G	2261.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr6	152673147	rs6908392	G	A	1234.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr6	152673519	rs6932325	A	C	1363.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr6	152673543	rs11370219	C	CT	290.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.275;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=15.30;ReadPosRankSum=0.668;SOR=0.420;set=HC	GT:AD:AF:DP	1/1:2,17:0.89:19
chr6	152675854	rs9397102	A	G	10253.77	.	AC=2;AF=1.00;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	1/1:0,377:1.00:377
chr6	152683183	rs7771657	G	T	598.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:1,23:0.96:24
chr6	152683199	rs7771662	G	A	748.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:1,27:0.96:28
chr6	152683413	rs4407724	G	T	2371.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr6	152685864	.	G	GAA	510.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=67.13;QD=36.48;SOR=5.421;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr6	152685865	.	G	GGAAGGGAGGA	1718.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=66.98;QD=42.97;SOR=5.421;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr6	152688567	rs7775637	C	T	1531.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr6	152690559	rs1873176	G	A	1115.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr6	152694184	rs6913579	T	C	2912.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr6	152730090	.	C	CA	113.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.763;ClippingRankSum=0.000;DP=53;ExcessHet=3.0103;FS=1.502;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.37;ReadPosRankSum=1.765;SOR=0.317;set=HC	GT:AD:AF:DP	0/1:33,15:0.31:48
chr6	152762173	.	A	G	328.77	.	AC=2;AF=1.00;AN=2;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr6	152777200	rs150764932	A	G	1559.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr6	153296541	rs2073260	G	C	6671.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr6	153311001	rs3860814	A	C	1104.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.90;QD=28.33;SOR=1.387;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr6	153315921	rs3799133	G	A	1314.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr6	153323594	rs3818123	C	T	2345.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr6	153323709	rs3818125	T	C	447.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr6	153323896	rs3818127	T	C	472.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.88;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr6	153332926	rs34837755	AATAAT	A	1652.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.26;QD=43.49;SOR=1.493;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr6	153344531	rs685449	T	A	4156.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr6	153345309	rs545323	C	T	429.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr6	153603884	.	G	GA	77.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.934;ClippingRankSum=0.000;DP=110;ExcessHet=3.0103;FS=2.354;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.84;ReadPosRankSum=-0.121;SOR=1.142;set=HC	GT:AD:AF:DP	0/1:75,17:0.18:92
chr6	154412004	rs2075572	G	C	1324.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr6	154414375	rs9282821	A	C	3832.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr6	154414446	rs540825	A	T	5330.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr6	154414563	rs675026	A	G	5140.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.14;SOR=1.255;set=HC	GT:AD:AF:DP	1/1:0,122:1.00:122
chr6	154414573	rs562859	C	T	4753.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.85;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,106:1.00:106
chr6	154415434	rs660756	G	T	4988.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr6	154428702	rs650245	A	G	2681.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr6	154429085	rs71021021	AT	A	317.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr6	154431393	rs497332	C	G	437.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr6	154520741	rs7341264	C	G	871.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr6	154535444	rs2293537	A	G	9442.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:4,351:0.99:355
chr6	154542491	rs2272381	A	G	4429.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr6	154567676	rs7759388	G	A	3861.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr6	154763401	rs6557351	G	A	2250.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr6	154763522	rs6907693	T	C	547.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr6	154771277	rs9322467	A	G	4251.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr6	154771449	rs4870285	T	C	9462.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:0,369:1.00:369
chr6	155094988	rs7762129	G	A	259.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr6	155116285	rs79232250	TTC	T	3794.73	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr6	155124583	rs3757291	T	G	558.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr6	155129784	rs66499928	CCTTT	C	5273.73	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr6	155486519	rs41284214	G	A	4826.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:3,188:0.98:191
chr6	155486643	rs73795328	A	G	1320.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:1,46:0.98:47
chr6	155489849	rs73795336	G	A	2251.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:1,78:0.99:79
chr6	155561564	rs11751085	C	T	693.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr6	155561760	rs4259257	T	C	4844.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr6	155561796	rs11751128	C	T	4893.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr6	155565089	rs6902025	TC	CT	5404.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr6	155565744	rs6907595	T	C	6549.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr6	155566889	.	G	GTTTTT	1327.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.779;ClippingRankSum=0.000;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=35.88;ReadPosRankSum=-0.966;SOR=1.508;set=HC	GT:AD:AF:DP	1/1:2,35:0.95:37
chr6	155571113	rs3011902	A	G	4798.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr6	155571697	rs1041474	T	C	2733.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr6	155572986	rs3011899	G	A	109.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr6	155573331	rs3011898	A	G	1270.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr6	155574198	rs2989458	C	T	5567.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.19;SOR=1.099;set=HC	GT:AD:AF:DP	1/1:0,126:1.00:126
chr6	155574207	rs2274824	T	C	5507.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.37;SOR=1.206;set=HC	GT:AD:AF:DP	1/1:0,127:1.00:127
chr6	155575546	rs1331213	C	G	4910.73	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr6	155575607	rs3011895	G	A	8539.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr6	155744013	rs1889503	C	G	2292.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr6	155750219	rs231955	G	A	3726.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr6	157101072	rs1261893	A	C	1612.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr6	157405761	rs3734440	G	A	2187.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr6	157405930	rs3734441	G	A	8350.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chr6	157950088	rs17541624	G	C	2107.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr6	157950346	rs9457707	T	C	681.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr6	157963550	rs17165416	T	C	2601.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr6	157963743	rs2365611	G	A	3778.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr6	157963842	rs2886421	C	A	1080.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:1,40:0.98:41
chr6	158049351	.	C	CT	71.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.555;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=2.938;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=1.469;QD=1.59;ReadPosRankSum=-0.645;SOR=0.339;set=HC	GT:AD:AF:DP	0/1:32,13:0.29:45
chr6	158068481	rs616538	T	C	1438.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr6	158074504	rs636169	A	G	3271.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr6	158294104	.	CT	C	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.428;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;FS=1.231;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.68;ReadPosRankSum=0.349;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:33,14:0.30:47
chr6	158322886	rs11367433	CT	C	109.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.332;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=1.115;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.00;ReadPosRankSum=0.898;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:37,18:0.33:55
chr6	158361899	rs912879	C	T	3968.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr6	158489863	rs736741	C	T	874.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr6	158490779	rs751873	C	T	1798.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr6	158495863	rs12203105	G	A	2044.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:2,76:0.97:78
chr6	158502527	rs1744177	C	T	5182.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr6	158502590	rs173263	C	A	2776.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr6	158502668	.	C	T	425	.	AC=2;AF=1.00;AN=2;BRF=0.27;FR=1.0000;HP=21;HapScore=2;MGOF=4;MMLQ=28;MQ=47.47;NF=0;NR=16;PP=425;QD=28.7357007842;SC=TTTTTTTTTTCTCTGAGACAA;SbPval=1.0;Source=Platypus;TC=17;TCF=0;TCR=17;TR=16;WE=158502676;WS=158502658;set=Platypus	GT:AD:AF:DP	1/1:1,16:0.94:17
chr6	158505088	rs1744173	A	G	6737.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr6	158505241	rs1750036	G	C	1569.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr6	158507840	rs1744170	C	T	5630.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr6	158509750	rs350289	A	G	5250.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr6	158569886	rs9356399	T	C	4246.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr6	158570024	rs71027384	A	AT	1168.73	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:5,58:0.92:63
chr6	158571501	rs6929274	G	A	1338.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr6	158571655	rs6929520	G	C	767.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr6	158579237	rs6933016	T	C	2069.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:2,74:0.97:76
chr6	158611655	rs9459639	A	T	3135.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr6	158611904	rs34815722	AGT	A	1942.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr6	158611969	rs9459642	G	A	3441.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr6	158735087	rs9364951	C	T	4465.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.11;SOR=1.037;set=HC	GT:AD:AF:DP	1/1:0,99:1.00:99
chr6	158735090	rs7756620	T	C	4465.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.22;SOR=1.029;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chr6	158870081	rs705956	A	G	4970.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr6	158873023	rs341139	T	C	1347.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr6	158873376	rs827958	T	C	909.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr6	158882836	rs587385	A	G	2262.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr6	158910491	rs2274884	TG	CA	812.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr6	158910543	rs2274883	T	C	1143.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr6	158923434	rs9364968	G	C	10084.77	.	AC=2;AF=1.00;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	1/1:0,369:1.00:369
chr6	158924088	rs914690	T	C	8548.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,318:1.00:318
chr6	158927651	rs3828712	A	G	6415.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:2,233:0.99:235
chr6	158994577	rs4709217	T	G	6491.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr6	159128430	rs59396937	CT	C	194.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.610;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.74;ReadPosRankSum=0.521;SOR=1.244;set=HC	GT:AD:AF:DP	0/1:4,16:0.80:20
chr6	159181885	rs3127155	G	A	1211.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr6	159183351	rs9347251	T	C	1611.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr6	159184462	rs2291387	A	G	4777.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr6	159185427	rs7775997	G	A	667.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr6	159185563	rs3123101	T	A	4521.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr6	159188128	rs2242318	A	G	4156.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr6	159191788	rs3212308	C	T	3408.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr6	159192045	rs1038537	A	G	1142.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr6	159192575	rs3127181	A	G	823.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr6	159197371	rs9346767	T	C	4457.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr6	159204426	rs7769862	T	A	560.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr6	159204786	rs3123111	C	T	1187.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr6	159205475	rs3127217	T	C	682.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr6	159205632	rs9364995	C	T	4338.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr6	159205668	rs3103003	G	A	5653.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr6	159210662	rs140055516	TTTTC	T	2816.73	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr6	159291490	rs6455609	G	C	983.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr6	159316430	rs9457507	C	T	1005.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr6	159590734	rs295332	T	C	685.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr6	159652931	rs420137	G	C	3950.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:2,145:0.99:147
chr6	159653635	rs381639	C	G	11427.77	.	AC=2;AF=1.00;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	1/1:0,421:1.00:421
chr6	159654487	rs404435	G	T	10518.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:0,383:1.00:383
chr6	159654551	rs370434	C	G	12629.77	.	AC=2;AF=1.00;AN=2;DB;DP=451;set=Intersection	GT:AD:AF:DP	1/1:0,451:1.00:451
chr6	159654994	rs402388	A	C	6114.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr6	159655084	rs420054	C	G	5174.73	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:2,187:0.99:189
chr6	159655102	rs436743	A	G	5553.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr6	159655326	rs3003174	T	C	7993.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr6	159655383	rs2501176	A	G	19110.77	.	AC=2;AF=1.00;AN=2;DB;DP=442;set=Intersection	GT:AD:AF:DP	1/1:0,442:1.00:442
chr6	159655402	rs2932988	A	G	20179.77	.	AC=2;AF=1.00;AN=2;DB;DP=484;set=Intersection	GT:AD:AF:DP	1/1:0,484:1.00:484
chr6	159655593	rs2501177	C	T	2569.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr6	159657195	rs420339	G	T	1035.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr6	159659481	rs419836	C	T	1300.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr6	159659523	rs450538	A	G	1996.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr6	159660779	rs141435210	GCCACCACCCGCCGCACGA	G	3086.73	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr6	159660879	rs386360	C	A	4942.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.009;ClippingRankSum=0.000;DB;DP=199;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.05;MQRankSum=0.142;QD=24.84;ReadPosRankSum=0.436;SOR=0.340;set=HC	GT:AD:AF:DP	1/1:1,198:0.99:199
chr6	159669953	rs28487880	G	C	494.76	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:2,21:0.91:23
chr6	159670276	rs294907	A	G	1079.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr6	159670303	rs294906	G	A	675.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr6	159672455	rs294899	C	T	9151.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:2,338:0.99:340
chr6	159677498	rs294890	C	T	2218.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr6	159682206	rs294883	C	T	2895.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr6	159692321	rs409691	G	A	1986.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr6	159692559	rs455162	G	A	545.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr6	160114168	rs5746094	T	C	4600.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:1,175:0.99:176
chr6	160114311	rs5746092	G	C	3276.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr6	160114366	rs5746091	C	T	1769.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.425;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=32.923;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=35.40;ReadPosRankSum=2.336;SOR=5.460;set=HC	GT:AD:AF:DP	1/1:3,47:0.94:50
chr6	160114376	rs5746090	G	A	1682.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.13;SOR=5.283;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr6	160133719	.	G	C	2965	.	AC=2;AF=1.00;AN=2;BRF=0.58;FR=1.0000;HP=1;HapScore=1;MGOF=23;MMLQ=24;MQ=53.54;NF=171;NR=120;PP=2965;QD=20;SC=CCATAACCACGACTCAGCTGC;SbPval=0.62;Source=Platypus;TC=299;TCF=171;TCR=128;TR=291;WE=160133727;WS=160133716;set=Platypus	GT:AD:AF:DP	1/1:8,291:0.97:299
chr6	160133957	rs752779	G	A	7724.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr6	160159863	.	T	TA	52.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.042;ClippingRankSum=0.000;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.47;MQRankSum=1.687;QD=2.29;ReadPosRankSum=-0.507;SOR=0.394;set=HC	GT:AD:AF:DP	0/1:15,8:0.35:23
chr6	160159907	rs6930976	A	G	1100.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr6	160169258	rs7766006	G	T	6705.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:2,248:0.99:250
chr6	160176755	rs202118718	G	GT	149.75	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.72;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr6	160182617	rs2273818	C	T	7016.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr6	160182749	rs2277073	G	A	2611.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.11;SOR=1.499;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr6	160182845	rs2277072	A	G	960.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr6	160183325	rs2273819	G	C	623.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr6	160198359	rs3464	C	T	4167.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr6	160199424	rs34047044	TA	T	1619.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr6	160199687	rs15982	T	C	3193.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr6	160200026	rs4832	A	C	1754.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr6	160201295	rs2295901	C	A	1267.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr6	160201677	rs3818300	G	A	1597.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr6	160202282	rs2295898	C	G	353.74	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:1,13:0.93:14
chr6	160205991	rs1547093	C	A	5422.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:1,191:0.99:192
chr6	160206716	rs3818298	T	C	3852.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr6	160211485	rs2273823	T	C	800.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr6	160211554	rs1128661	T	G	2874.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr6	160211636	rs1128670	G	A	7354.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr6	160211645	rs58504486	GGTT	G	12636.73	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr6	160211697	rs9346795	C	T	10721.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.925;ClippingRankSum=0.000;DB;DP=245;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.13;MQRankSum=0.184;QD=43.76;ReadPosRankSum=0.105;SOR=0.842;set=HC	GT:AD:AF:DP	1/1:2,243:0.99:245
chr6	160211700	rs9355278	C	G	10795.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.859;ClippingRankSum=0.000;DB;DP=246;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.13;MQRankSum=0.184;QD=44.06;ReadPosRankSum=0.316;SOR=0.880;set=HC	GT:AD:AF:DP	1/1:2,243:0.99:245
chr6	160212268	rs4709371	G	A	1360.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr6	160221279	rs71927633	GCGTGGGCAGCA	G	2328.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr6	160221475	rs733319	A	G	1254.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.70;SOR=1.132;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr6	160221560	rs12211823	G	A	763.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr6	160224346	rs2146163	T	C	4301.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr6	160225559	rs9364536	G	C	4078.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr6	160226923	rs6910976	A	G	5152.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:1,201:1.00:202
chr6	160237190	.	C	CA	769.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.528;ClippingRankSum=0.000;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.85;MQRankSum=0.781;QD=34.99;ReadPosRankSum=1.512;SOR=4.804;set=HC	GT:AD:AF:DP	1/1:1,21:0.95:22
chr6	160237192	.	C	G	452	.	AC=1;AF=0.500;AN=2;BRF=0.4;FR=0.5208;HP=6;HapScore=2;MGOF=24;MMLQ=24;MQ=58.41;NF=0;NR=14;PP=452;QD=34.7693723248;SC=TCCCCACCCCCCCACACCCCT;SbPval=1.0;Source=Platypus;TC=17;TCF=0;TCR=17;TR=14;WE=160237200;WS=160237178;set=Platypus	GT:AD:AF:DP	1/0:3,14:0.82:17
chr6	160237192	.	C	CCG	769.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.853;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.65;MQRankSum=0.738;QD=36.65;ReadPosRankSum=0.921;SOR=4.712;set=HC	GT:AD:AF:DP	1/1:1,20:0.95:21
chr6	160237489	rs2342480	T	C	2984.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr6	160237662	rs199990987	CTT	C	436.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.37;QD=20.80;SOR=2.179;set=HC	GT:AD:AF:DP	1/1:4,17:0.81:21
chr6	160238027	rs77632648	C	G	1802.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr6	160239835	rs9347350	T	C	2294.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:2,75:0.97:77
chr6	160450401	rs57359755	CT	C	238.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:1,16:0.94:17
chr6	160453561	rs4709390	T	G	3208.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:3,120:0.98:123
chr6	160453978	rs1570070	A	G	1387.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr6	160461793	rs8191774	T	C	394.41	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:2,17:0.89:19
chr6	160464289	rs894817	G	A	3990.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr6	160465486	rs66749494	TTGTC	T	1087.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr6	160465753	rs609207	T	G	418.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr6	160505199	rs614754	C	G	2262.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr6	160645832	rs316003	C	T	8781.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	1/1:0,336:1.00:336
chr6	160645921	rs3219197	C	CT	2253.73	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:2,96:0.98:98
chr6	160666660	rs11422119	A	AC	1481.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr6	160670282	rs316019	A	C	5878.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:1,216:1.00:217
chr6	160670494	rs316018	A	G	1930.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr6	160670533	rs316017	C	T	955.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr6	160671500	rs316016	T	C	1735.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr6	160677614	rs2774230	G	C	4249.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:2,158:0.99:160
chr6	160769423	rs555754	G	A	1495.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr6	160769811	rs668871	C	T	7355.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr6	160969629	rs1801693	A	G	2535.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr6	161132146	rs4757	C	T	5319.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr6	161135667	rs147901890	CTTATTGCCAATT	C	715.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr6	161137663	rs4252109	T	G	3560.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr6	161139857	rs13231	A	G	2253.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:2,88:0.98:90
chr6	161143376	rs4252117	A	G	3943.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr6	161143608	rs4252120	T	C	2223.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr6	161152240	rs4252125	G	A	3056.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr6	161152294	rs4252126	A	G	1964.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr6	161153080	rs4252130	A	C	1582.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr6	161160083	rs2859879	G	A	2844.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr6	161469455	rs9346846	T	A	468.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr6	161469774	rs4559074	G	A	6705.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr6	161502094	rs9347479	C	T	1295.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr6	161509003	rs9355332	T	A	1428.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr6	161517964	rs2177587	T	C	1389.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr6	161519350	.	CCTGCTG	C,CCTG	5590.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=227;set=Intersection	GT:AF:DP	1/2:0.18,0.80:208
chr6	161523834	rs35527826	TA	T	107.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.149;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.84;ReadPosRankSum=0.000;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:22,16:0.42:38
chr6	161531006	rs4709493	G	C	362.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr6	161532855	rs35961625	CT	C	7980.73	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr6	161557703	rs6455706	A	G	4198.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr6	161970150	rs71694927	ATGTG	A	1801.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr6	161990339	rs10945756	G	A	4235.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr6	161990483	rs3765474	C	T	4338.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:2,161:0.99:163
chr6	161990516	rs3765475	G	C	2728.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr6	162137099	rs112078090	CATCTT	C	4283.73	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr6	162622304	rs4709583	A	G	1411.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr6	162992348	rs79555231	C	T	171.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr6	163149497	rs2276201	T	C	1732.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr6	163587146	rs1124951	C	G	4248.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr6	163587312	rs3064931	CAAA	C	7801.73	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr6	163600225	rs742956	C	A	4961.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr6	163611793	rs6907521	C	T	2106.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:2,78:0.97:80
chr6	163612783	rs6937392	C	A	13296.77	.	AC=2;AF=1.00;AN=2;DB;DP=504;set=Intersection	GT:AD:AF:DP	1/1:0,494:1.00:494
chr6	164892060	rs200184425	CCCTT	C	504.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.04;QD=38.83;SOR=2.147;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr6	165108555	rs79222572	T	G	9503.77	.	AC=2;AF=1.00;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	1/1:2,370:0.99:372
chr6	165693624	rs1413100	C	T	1298.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr6	165694945	rs1333501	C	G	446.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr6	165703633	rs5881641	CA	C	408.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr6	165862295	rs2274577	A	G	396.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr6	165863695	rs57550533	C	CA	5107.73	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr6	165989776	rs1410479	C	T	4465.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr6	166075362	rs6456003	G	T	3121.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr6	166401512	rs697475	T	A	1945.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr6	166572045	rs3127328	C	T	1173.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr6	166574246	rs3127334	G	A	1205.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr6	166574308	rs3099267	T	C	2280.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr6	166720806	rs911203	G	C	4780.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr6	166721211	rs13204594	G	T	2294.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr6	166721224	rs7757150	C	G	2204.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr6	166721424	rs13205770	C	T	563.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr6	166721667	rs115389546	A	G	89.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr6	166739684	rs10806847	G	A	720.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr6	166780349	rs11557064	G	T	5296.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:1,199:0.99:200
chr6	166796433	rs1546854	C	A	4351.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:1,154:0.99:155
chr6	166826255	rs909631	G	A	2400.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr6	166826304	rs760670	T	C	4553.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr6	166827436	rs2235295	T	C	3309.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr6	166862136	rs7746519	G	A	1508.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr6	166889160	rs2235278	A	G	1737.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr6	166889281	rs4373344	T	A	1920.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr6	166889331	rs3830731	CAG	C	2773.73	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr6	166903962	rs2072832	C	T	560.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr6	166903983	rs2072831	C	T	1015.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.17;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr6	166903987	rs2072830	C	A	1048.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.95;SOR=2.215;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr6	166952264	rs1003857	G	A	2386.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr6	167271632	rs9459780	C	G	6271.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:2,246:0.99:248
chr6	167271711	rs943687	T	C	6040.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr6	167352104	rs3777722	C	A	2889.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr6	167435747	.	A	AAC	194.79	.	AC=1;AF=0.500;AN=2;DP=16;set=Intersection	GT:AD:AF:DP	0/1:5,10:0.67:15
chr6	167453519	rs368396376	A	AT	1568.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.846;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.66;ReadPosRankSum=0.053;SOR=0.948;set=HC	GT:AD:AF:DP	1/1:16,91:0.85:107
chr6	167571048	rs6902566	T	C	3691.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr6	167584353	rs201194115	C	T	883.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.21;QD=28.51;SOR=2.694;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr6	167590454	rs71571482	G	A	1591.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.44;QD=26.53;SOR=1.460;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr6	167590541	rs3737098	G	A	5406.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.77;QD=24.92;SOR=0.779;set=HC	GT:AD:AF:DP	1/1:0,217:1.00:217
chr6	167590574	rs2989541	G	C	4444.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.95;QD=25.99;SOR=0.728;set=HC	GT:AD:AF:DP	1/1:0,171:1.00:171
chr6	167590739	rs62436856	C	T	292.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=38.68;QD=29.28;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr6	167592464	rs60509455	A	G	1131.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr6	167592656	rs4710193	G	C	1735.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:18,78:0.81:96
chr6	167595183	rs377058325	T	C	942.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.399;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=10.280;MLEAC=2;MLEAF=1.000;MQ=40.90;MQRankSum=-1.877;QD=29.46;ReadPosRankSum=-0.731;SOR=4.608;set=HC	GT:AD:AF:DP	1/1:1,31:0.97:32
chr6	167595449	rs139049693	A	C	753.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.39;QD=32.77;SOR=6.358;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr6	167622070	rs671511	C	T	277.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr6	167622105	rs28661326	A	G	660.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.51;QD=26.43;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr6	167622205	rs28588506	G	A	2090.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr6	167622284	rs35304076	C	T	3621.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:2,140:0.99:142
chr6	167622347	rs9459922	A	C	2951.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr6	167622389	rs6931756	A	G	2197.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr6	167622419	rs6936429	T	C	1539.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr6	167704944	rs2076005	T	G	3352.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr6	167709501	rs2076009	G	A	5445.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr6	167709702	rs2235197	G	A	5739.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr6	167719436	rs2072767	G	A	5865.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr6	167728774	rs663606	TG	CA	2509.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=46.49;QD=44.03;SOR=1.140;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr6	167752312	.	G	GTTCCTTCCTTCC	1348.73	.	AC=2;AF=1.00;AN=2;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.83;QD=43.51;SOR=4.804;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr6	167754661	rs909545	A	G	7813.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr6	167786551	.	T	G	108	.	AC=1;AF=0.500;AN=2;BRF=0.39;FR=0.5000;HP=8;HapScore=2;MGOF=4;MMLQ=25;MQ=42.13;NF=8;NR=4;PP=108;QD=11.8976010456;SC=TAGTTTTGGGTTTTTTTTTAA;SbPval=0.17;Source=Platypus;TC=33;TCF=27;TCR=6;TR=12;WE=167786559;WS=167786541;set=Platypus	GT:AD:AF:DP	1/0:21,12:0.36:33
chr6	167789427	rs371144670	CAGTT	C	1627.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.91;QD=46.51;SOR=2.964;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr6	167789440	rs78747081	T	C	1906.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.86;QD=43.34;SOR=2.409;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr6	167789440	.	TCG	CCT	1747	.	AC=2;AF=1.00;AN=2;BRF=0.38;FR=1.0000;HP=4;HapScore=1;MGOF=2;MMLQ=28;MQ=44.5;NF=33;NR=11;PP=1747;QD=40.9197244287;SC=TTAGGAGCCCTCGACCCTGCT;SbPval=0.54;Source=Platypus;TC=48;TCF=36;TCR=12;TR=44;WE=167789450;WS=167789417;set=Platypus	GT:AD:AF:DP	1/1:4,44:0.92:48
chr6	167789442	rs76095779	G	T	1906.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.86;QD=43.34;SOR=2.409;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr6	167789615	rs58620632	C	T	1405.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr6	167791524	rs17855200	C	T	713.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.14;QD=27.45;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr6	167791530	rs17855837	G	C	349.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.65;QD=87.44;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr6	167791549	rs3010594	T	G	83.03	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.34;QD=20.76;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr6	167796186	rs6911999	G	A	68.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr6	167796415	rs9457321	A	C	1155.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr6	167797844	rs75736096	C	T	3733.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr6	167907609	.	T	TAC	595.73	.	AC=2;AF=1.00;AN=2;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr6	167907677	.	T	TACAC,TAC	2100.73	.	AC=1,0;AF=0.500,0.00;AN=2;DP=59;set=Intersection	GT:AF:DP	0/1:0.91:58
chr6	168060278	.	ACACACACACACACACATACATATG	A	1058.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.655;ClippingRankSum=0.000;DP=99;ExcessHet=3.0103;FS=4.314;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.91;ReadPosRankSum=-0.785;SOR=1.885;set=HC	GT:AD:AF:DP	0/1:8,48:0.86:56
chr6	168228026	rs201871553	T	TC	278.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.64;QD=25.34;SOR=4.977;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr6	168265102	rs2301530	A	G	2693.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr6	168430555	rs60520213	TA	T	181.80	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr6	168436563	rs2306946	G	T	847.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr6	168442687	rs12197062	A	C	3059.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr6	168457801	rs3734898	A	G	2090.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr6	168458074	rs3734900	G	A	972.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr6	168459790	rs1465182	G	T	1464.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:1,55:0.98:56
chr6	168459845	rs1548349	G	C	2086.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr6	168462765	rs3823460	C	T	332.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr6	168463624	rs902393	G	A	5480.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr6	168468186	rs6906979	G	T	4348.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:1,162:0.99:163
chr6	168475764	rs9364396	G	T	2134.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr6	168475822	rs3816859	A	G	3877.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr6	168476197	rs77557693	CA	AG	1400.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr6	168476532	.	CGTGTCCACATTTCCGGTGCCCGGTGTCCACATTTCCGGCGTCCCGTGTCCACATTTCCGGTGCCCG	C	928	.	AC=2;AF=1.00;AN=2;BRF=0.46;FR=1.0000;HP=2;HapScore=1;MGOF=2;MMLQ=20;MQ=62.68;NF=1;NR=10;PP=928;QD=87.5454545455;SC=TCCGGCGTCCCGTGTCCACAT;SbPval=0.94;Source=Platypus;TC=26;TCF=6;TCR=20;TR=11;WE=168476605;WS=168476522;set=Platypus	GT:AD:AF:DP	1/1:15,11:0.42:26
chr6	168479604	rs34054991	G	A	5538.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr6	168479790	rs11750985	C	T	4525.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr6	168479809	rs41266315	G	A	3535.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr6	168479859	rs41266317	C	T	1719.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr6	168482110	rs4708429	C	T	3074.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr6	168482329	rs4708430	C	T	388.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr6	168482351	rs78336212	C	A	295.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr6	168708751	rs10945499	A	G	2465.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr6	168708793	rs10945500	C	G	3679.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr6	168708816	rs10945501	T	G	4534.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr6	168709385	rs6925614	T	C	16960.77	.	AC=2;AF=1.00;AN=2;DB;DP=622;set=Intersection	GT:AD:AF:DP	1/1:1,616:1.00:617
chr6	168927213	rs12111003	G	A	720.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr6	168928225	rs2224209	G	A	419.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr6	168928251	rs2609287	C	T	649.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr6	168928519	rs2609286	C	T	1325.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr6	169055891	.	C	T	1502	.	AC=2;AF=1.00;AN=2;BRF=0.52;FR=1.0000;HP=1;HapScore=1;MGOF=4;MMLQ=20;MQ=51.26;NF=51;NR=39;PP=1502;QD=17.075235695;SC=ACCAACCCTGCACCTGAGCTC;SbPval=0.7;Source=Platypus;TC=103;TCF=54;TCR=49;TR=90;WE=169055899;WS=169055881;set=Platypus	GT:AD:AF:DP	1/1:13,90:0.87:103
chr6	169065126	rs9364271	G	A	2286.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr6	169617726	rs8089	A	C	157.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr6	169617934	rs58423957	GA	G	1034.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr6	169618082	rs111579627	A	G	135.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.78;QD=22.64;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr6	169619815	rs10945402	C	T	2193.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr6	169619933	rs113367461	T	TTTCCTTCC	5088.73	.	AC=2;AF=1.00;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.08;QD=43.87;SOR=0.730;set=HC	GT:AD:AF:DP	1/1:0,116:1.00:116
chr6	169620247	rs9393165	T	C	1209.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr6	169622263	rs6605530	G	A	671.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr6	169628169	rs33928942	CAA	C	1111.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.562;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=2.695;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=0.390;QD=19.85;ReadPosRankSum=-0.569;SOR=0.156;set=HC	GT:AD:AF:DP	1/1:11,45:0.80:56
chr6	169629783	rs6422747	G	A	3396.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:2,123:0.98:125
chr6	169629910	rs6422748	G	C	983.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr6	169632305	rs145532758	AG	A	7878.73	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:1,225:1.00:226
chr6	169637456	rs9283850	G	A	6224.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr6	169637469	rs73043889	G	T	5648.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr6	169637519	rs9283851	C	T	1751.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr6	169637911	rs9766678	G	A	4825.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr6	169641950	rs148909888	G	A	4658.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr6	169646199	rs73046008	A	C	11081.77	.	AC=2;AF=1.00;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	1/1:1,384:1.00:385
chr6	169646409	rs73046010	A	G	5752.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:3,205:0.99:208
chr6	169648767	rs12178180	G	A	6494.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr6	170118085	rs7760142	C	T	223.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr6	170591923	rs1033583	T	G	1521.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:1,56:0.98:57
chr6	170594819	rs2255020	T	C	4548.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr6	170595430	rs2747757	G	C	5086.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr6	170598204	rs2295204	G	A	2078.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:2,79:0.98:81
chr6	170598227	rs2747756	T	G	4172.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr6	170626943	rs3800266	T	C	5904.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr6	170627586	rs6917485	G	T	28919.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.059;ClippingRankSum=0.000;DB;DP=714;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.97;MQRankSum=-0.027;QD=41.02;ReadPosRankSum=1.727;SOR=0.333;set=HC	GT:AD:AF:DP	1/1:1,704:1.00:705
chr6	170627614	rs6905356	T	C	29713.77	.	AC=2;AF=1.00;AN=2;DB;DP=754;set=Intersection	GT:AD:AF:DP	1/1:2,742:1.00:744
chr6	170627695	.	A	ACCCTGAACCCAGGCAAGAAGTTCCCATGTGTACAGG	18503.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.426;ClippingRankSum=0.000;DP=645;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.99;MQRankSum=2.259;QD=46.96;ReadPosRankSum=-0.031;SOR=0.446;set=HC	GT:AD:AF:DP	1/1:3,391:0.99:394
chr6	170627739	.	G	C	2962	.	AC=1;AF=0.500;AN=2;BRF=0.48;FR=0.5000;HP=2;HapScore=2;MGOF=62;MMLQ=22;MQ=56.4;NF=146;NR=158;PP=2962;QD=20;SC=AGGCCCTGAAGCCAGGCAAGA;SbPval=0.49;Source=Platypus;TC=572;TCF=271;TCR=301;TR=304;WE=170627747;WS=170627729;set=Platypus	GT:AD:AF:DP	1/0:268,304:0.53:572
chr6	170627761	rs6900199	A	G	15860.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.006;ClippingRankSum=0.000;DB;DP=553;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.70;MQRankSum=2.322;QD=36.80;ReadPosRankSum=-1.000;SOR=0.449;set=HC	GT:AD:AF:DP	1/1:3,428:0.99:431
chr6	170627761	.	ATACAGACTCTGAAC	GTACAGACTCTGAAC,GTACAGGCCCTGAAG	2962	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.48;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=36;MMLQ=22;MQ=56.33;NF=254,64;NR=286,87;PP=2962,2924;QD=20;SC=GTTCCCATGTATACAGACTCT;SbPval=0.53;Source=Platypus;TC=546;TCF=258;TCR=288;TR=540,151;WE=170627783;WS=170627751;set=Platypus	GT:AF:DP	0/1:0.99:546
chr6	170627797	rs9366138	A	G	21641.77	.	AC=2;AF=1.00;AN=2;DB;DP=560;set=Intersection	GT:AD:AF:DP	1/1:0,549:1.00:549
chr6	170628009	rs9348266	T	G	15780.77	.	AC=2;AF=1.00;AN=2;DB;DP=588;set=Intersection	GT:AD:AF:DP	1/1:0,571:1.00:571
chr6	170632383	rs3800267	A	G	1981.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:3,73:0.96:76
chr6	170845354	rs9348278	A	G	1117.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr6	170858045	rs2076319	C	T	2268.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr6	170862051	rs4710839	G	C	738.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr6	170862300	rs12717	G	C	3892.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr6	170871013	.	ACAG	A,ACAGCAG	2989	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.39;FR=0.5000,0.5000;HP=1;HapScore=1;MGOF=40;MMLQ=26;MQ=59.27;NF=58,58;NR=69,69;PP=2989,2748;QD=20;SC=AGCAACAACAACAGCAGCAGC;SbPval=0.41;Source=Platypus;TC=151;TCF=65;TCR=86;TR=127,127;WE=170871023;WS=170870994;set=Platypus	GT:AF:DP	0/1:0.84:151
chr6	170871037	rs71815788	GCAA	G	3572.73	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:6,96:0.94:102
chr6	170871046	.	ACAG	A	3000	.	AC=2;AF=1.00;AN=2;FR=1.0000;HP=1;HapScore=1;MGOF=11;MMLQ=25;MQ=58.13;NF=41;NR=74;PP=3000;QD=20;SC=AGCAACAGCAACAGCAGCAGC;SbPval=0.51;Source=Platypus;TC=133;TCF=47;TCR=86;TR=115;WE=170871065;WS=170871027;set=Platypus	GT:AD:AF:DP	1/1:18,115:0.86:133
chr6	170871051	.	AGC	A	3569.73	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=-2.250;ClippingRankSum=0.000;DP=237;ExcessHet=3.0103;FS=10.960;MLEAC=2;MLEAF=1.000;MQ=60.40;MQRankSum=0.000;QD=35.00;ReadPosRankSum=1.687;SOR=0.875;set=HC	GT:AD:AF:DP	1/1:6,96:0.94:102
chr6	170871054	.	AGCAG	A,ACAG	3065.73	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;BaseQRankSum=-2.486;ClippingRankSum=0.000;DP=238;ExcessHet=3.0103;FS=10.960;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.50;MQRankSum=0.000;QD=30.06;ReadPosRankSum=1.786;SOR=0.875;set=HC	GT:AD:AF:DP	1/2:6,16,80:0.16,0.78:102
chr6	170871055	.	G	A	2965	.	AC=2;AF=1.00;AN=2;FR=1.0000;HP=1;HapScore=1;MGOF=11;MMLQ=28;NF=36;NR=22;PP=2965;QD=20;SC=AACAGCAGCAGCAGCAGCAGC;SbPval=0.61;Source=Platypus;TC=184;TCF=111;TCR=73;TR=58;WE=170871065;WS=170871027;set=Platypus	GT:AD:AF:DP	1/1:126,58:0.32:184
chr6	170878793	rs1042327	T	C	4860.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr6	170886531	rs8770	T	C	796.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr6	170887693	rs3173219	G	C	1602.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr6	170888208	rs960744	A	G	363.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr6	170892100	rs9295417	T	C	180.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr6	170892444	rs370825740	CT	C	97.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.469;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.04;ReadPosRankSum=1.043;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:32,16:0.33:48
chr6	170892483	rs17860837	A	AT	2918.73	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr6	170892848	rs4140615	A	G	1811.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr6	170892919	rs113114915	T	TACTC	547.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr6	170893364	rs4140616	C	T	448.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr7	295683	rs36173688	T	TG	1637.73	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:48,61:0.56:109
chr7	296557	rs36164325	T	C	1677.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:82,76:0.48:158
chr7	298419	.	A	G	321	.	AC=1;AF=0.500;AN=2;BRF=0.26;FR=0.5000;HP=3;HapScore=2;MGOF=24;MMLQ=28;MQ=55.23;NF=16;NR=1;PP=321;QD=20.9277183851;SC=GATGGGTGGGATGGACCCACT;SbPval=0.78;Source=Platypus;TC=46;TCF=42;TCR=4;TR=17;WE=298427;WS=298415;set=Platypus	GT:AD:AF:DP	0/1:29,17:0.37:46
chr7	299558	.	T	TTCTC	1145.73	.	AC=1;AF=0.500;AN=2;DP=64;set=Intersection	GT:AD:AF:DP	0/1:35,28:0.44:63
chr7	299850	rs36170987	G	T	3555.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:134,155:0.54:289
chr7	299881	rs36139924	A	G	3632.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:138,166:0.55:304
chr7	299987	rs36138803	C	G	1666.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:55,78:0.59:133
chr7	330822	rs36180337	A	C	18915.77	.	AC=2;AF=1.00;AN=2;DB;DP=717;set=Intersection	GT:AD:AF:DP	1/1:1,711:1.00:712
chr7	330882	rs4077171	T	G	10991.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.50;SOR=2.969;set=HC	GT:AD:AF:DP	1/1:0,247:1.00:247
chr7	330882	.	TCA	GCG	2947	.	AC=2;AF=1.00;AN=2;BRF=0.32;FR=1.0000;HP=1;HapScore=1;MGOF=16;MMLQ=24;MQ=59.98;NF=36;NR=179;PP=2947;QD=20;SC=CGCGGCGGCTTCAGGGAGGTC;SbPval=0.57;Source=Platypus;TC=228;TCF=40;TCR=188;TR=215;WE=330892;WS=330872;set=Platypus	GT:AD:AF:DP	1/1:13,215:0.94:228
chr7	330884	rs4077172	A	G	10991.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.18;SOR=3.037;set=HC	GT:AD:AF:DP	1/1:0,238:1.00:238
chr7	331086	rs36129019	G	A	5766.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr7	331427	rs141537626	C	A	16208.77	.	AC=2;AF=1.00;AN=2;DB;DP=620;set=Intersection	GT:AD:AF:DP	1/1:1,606:1.00:607
chr7	540741	rs1800814	G	A	25449.77	.	AC=2;AF=1.00;AN=2;DB;DP=948;set=Intersection	GT:AD:AF:DP	1/1:1,931:1.00:932
chr7	550399	rs192632660	A	G	930.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.84;QD=38.78;SOR=6.439;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr7	550409	rs183980841	G	A	929.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.64;QD=38.74;SOR=6.439;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr7	550737	rs62433334	G	C	2502.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr7	551946	rs9692018	T	C	2422.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr7	559551	.	GC	G	187.70	.	AC=2;AF=1.00;AN=2;ClippingRankSum=-0.000;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.75;MQRankSum=-0.000;QD=18.77;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:1,9:0.90:10
chr7	591125	rs71518309	C	G	945.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:67,45:0.40:112
chr7	618855	rs62431411	T	C	4169.77	.	AC=1;AF=0.500;AN=2;DB;DP=470;set=Intersection	GT:AD:AF:DP	0/1:263,203:0.44:466
chr7	618869	rs62431412	G	A	4567.77	.	AC=1;AF=0.500;AN=2;DB;DP=544;set=Intersection	GT:AD:AF:DP	0/1:310,230:0.43:540
chr7	618938	rs3211362	A	G	6023.77	.	AC=1;AF=0.500;AN=2;DB;DP=716;set=Intersection	GT:AD:AF:DP	0/1:401,309:0.44:710
chr7	624221	rs9330368	T	G	3481.77	.	AC=1;AF=0.500;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	0/1:256,174:0.40:430
chr7	624344	rs9330367	C	T	2042.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:111,96:0.46:207
chr7	624366	rs13221342	G	A	1424.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:75,66:0.47:141
chr7	624401	rs9330366	C	T	730.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:38,31:0.45:69
chr7	772025	rs4072597	G	A	695.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:29,29:0.50:58
chr7	772174	rs4724987	G	A	3375.77	.	AC=1;AF=0.500;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	0/1:215,176:0.45:391
chr7	780687	rs62432212	T	C	4645.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr7	780859	rs6943174	T	G	353.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:9,16:0.64:25
chr7	780980	rs6943337	T	G	1589.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:55,77:0.58:132
chr7	794471	rs34761279	A	G	989.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:78,49:0.39:127
chr7	794576	rs62432239	C	T	237.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:21,15:0.42:36
chr7	801634	rs142752861	T	TTGAGCCCCAGGCCTCAAACATGTC	536.73	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:31,15:0.33:46
chr7	803342	rs4495324	G	A	1177.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:49,53:0.52:102
chr7	808588	rs6973614	C	T	704.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:23,29:0.56:52
chr7	808810	rs6946758	C	G	5162.77	.	AC=1;AF=0.500;AN=2;DB;DP=558;set=Intersection	GT:AD:AF:DP	0/1:303,249:0.45:552
chr7	810219	rs4720951	T	C	4406.77	.	AC=1;AF=0.500;AN=2;DB;DP=495;set=Intersection	GT:AD:AF:DP	0/1:261,229:0.47:490
chr7	813618	rs4719279	T	C	7116.77	.	AC=1;AF=0.500;AN=2;DB;DP=693;set=Intersection	GT:AD:AF:DP	0/1:352,334:0.49:686
chr7	813650	rs62432869	G	A	10042.77	.	AC=1;AF=0.500;AN=2;DB;DP=1033;set=Intersection	GT:AD:AF:DP	0/1:533,486:0.48:1019
chr7	813867	rs6973746	C	G	2274.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:75,87:0.54:162
chr7	814612	rs34943122	G	A	1024.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:58,47:0.45:105
chr7	814788	rs3922641	G	A	2799.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:153,135:0.47:288
chr7	822523	rs4719314	A	G	9239.77	.	AC=1;AF=0.500;AN=2;DB;DP=866;set=Intersection	GT:AD:AF:DP	0/1:426,419:0.50:845
chr7	825114	rs67721251	T	C	5301.77	.	AC=1;AF=0.500;AN=2;DB;DP=444;set=Intersection	GT:AD:AF:DP	0/1:194,248:0.56:442
chr7	855819	.	C	CAGACCCCTCCCCCAGGTGG	253.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.544;ClippingRankSum=0.000;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.42;MQRankSum=-1.710;QD=10.15;ReadPosRankSum=0.973;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:15,10:0.40:25
chr7	855838	.	C	G	110	.	AC=1;AF=0.500;AN=2;BRF=0.63;FR=0.5000;HP=1;HapScore=2;MGOF=24;MMLQ=27;MQ=55.11;NF=2;NR=6;PP=110;QD=18.0964015684;SC=CCCCCAGGTGCAGACCCCTCC;SbPval=0.46;Source=Platypus;TC=37;TCF=7;TCR=30;TR=8;WE=855846;WS=855828;set=Platypus	GT:AD:AF:DP	0/1:29,8:0.22:37
chr7	856320	rs6959154	C	T	525.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:11,25:0.69:36
chr7	857352	rs4275123	A	G	542.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:20,23:0.53:43
chr7	872100	rs6952577	T	C	5266.77	.	AC=1;AF=0.500;AN=2;DB;DP=472;set=Intersection	GT:AD:AF:DP	0/1:217,251:0.54:468
chr7	882829	rs34925195	GT	G	412.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.873;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=2.862;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.37;ReadPosRankSum=1.159;SOR=0.354;set=HC	GT:AD:AF:DP	0/1:26,30:0.54:56
chr7	891184	rs10628483	C	CGAT	2839.73	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:100,76:0.43:176
chr7	894422	rs10245785	T	C	2109.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:119,95:0.44:214
chr7	895928	rs12534606	A	G	1956.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:102,86:0.46:188
chr7	896142	rs4721834	C	T	2769.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:150,134:0.47:284
chr7	897492	rs10950789	A	G	3228.77	.	AC=1;AF=0.500;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	0/1:168,160:0.49:328
chr7	900035	rs4276575	G	A	1748.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:71,77:0.52:148
chr7	912755	rs4722034	C	T	2485.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:100,110:0.52:210
chr7	916534	rs150362623	C	G	1244.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:42,55:0.57:97
chr7	925717	rs11543222	G	A	3208.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:135,153:0.53:288
chr7	925949	rs10226357	A	G	508.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:20,19:0.49:39
chr7	926077	rs10267796	G	A	573.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:38,27:0.42:65
chr7	926827	rs4722203	T	C	13846.77	.	AC=2;AF=1.00;AN=2;DB;DP=503;set=Intersection	GT:AD:AF:DP	1/1:0,498:1.00:498
chr7	933234	rs35157448	T	A	589.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.453;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.02;ReadPosRankSum=0.302;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:17,14:0.45:31
chr7	933240	rs34784960	C	CGGT	688.73	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:20,17:0.46:37
chr7	939007	rs79698027	C	G	4963.77	.	AC=1;AF=0.500;AN=2;DB;DP=483;set=Intersection	GT:AD:AF:DP	0/1:240,239:0.50:479
chr7	939630	rs34786986	G	A	6199.77	.	AC=1;AF=0.500;AN=2;DB;DP=517;set=Intersection	GT:AD:AF:DP	0/1:225,279:0.55:504
chr7	940181	rs10256887	C	T	1225.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:88,73:0.45:161
chr7	940258	rs113839920	G	GGGCAAAGGCA	3259.73	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:103,87:0.46:190
chr7	940267	rs3824079	T	C	3081.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:104,83:0.44:187
chr7	940298	rs13224354	C	G	894.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:86,48:0.36:134
chr7	940724	rs11765973	G	A	1244.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:58,54:0.48:112
chr7	943998	rs3824077	C	T	614.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:28,30:0.52:58
chr7	944683	rs1881121	C	T	2706.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:119,132:0.53:251
chr7	944923	.	GGGGGACACGGACA	G	553.73	.	AC=2;AF=1.00;AN=2;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.59;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr7	944952	rs200966272	GGA	G	517.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.14;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr7	944993	.	CAGGGAAAGGGAA	C	81.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;ClippingRankSum=-0.000;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=16.35;ReadPosRankSum=1.645;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr7	960642	rs34217249	G	A	2835.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:166,135:0.45:301
chr7	960705	rs10250309	T	C	3578.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr7	966926	rs3824074	G	C	2986.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr7	1022877	rs138178506	C	T	2101.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:40,94:0.70:134
chr7	1167117	.	T	TA	117.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.147;ClippingRankSum=0.000;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.84;ReadPosRankSum=-1.663;SOR=0.470;set=HC	GT:AD:AF:DP	0/1:49,15:0.23:64
chr7	1481919	rs4236408	C	A	17197.77	.	AC=2;AF=1.00;AN=2;DB;DP=628;set=Intersection	GT:AD:AF:DP	1/1:0,626:1.00:626
chr7	1484572	rs10435184	A	G	4001.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr7	1499089	.	C	T	983.77	.	AC=1;AF=0.500;AN=2;DP=88;set=Intersection	GT:AD:AF:DP	0/1:46,42:0.48:88
chr7	1511046	.	G	A	1317.77	.	AC=1;AF=0.500;AN=2;DP=119;set=Intersection	GT:AD:AF:DP	0/1:65,53:0.45:118
chr7	1528947	.	T	TCCCGGGCCCGCCGAGGGGACGTGCGCACTCACTTCAGGCCCTGCTCCCAGC	7317.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.217;ClippingRankSum=0.000;DP=261;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.91;MQRankSum=0.849;QD=62.01;ReadPosRankSum=0.727;SOR=1.124;set=HC	GT:AD:AF:DP	1/1:3,115:0.97:118
chr7	1590368	rs6463921	A	G	4916.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr7	1595005	rs183593116	C	T	1362.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.762;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=3.051;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.95;ReadPosRankSum=1.063;SOR=0.821;set=HC	GT:AD:AF:DP	0/1:71,66:0.48:137
chr7	1627632	rs7800178	T	C	6865.77	.	AC=1;AF=0.500;AN=2;DB;DP=606;set=Intersection	GT:AD:AF:DP	0/1:270,333:0.55:603
chr7	1703082	rs144374574	T	TG	404.73	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:42,21:0.33:63
chr7	1855523	rs116850045	G	A	969.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:51,49:0.49:100
chr7	1878377	rs3889573	A	G	6689.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr7	1878453	rs1078112	T	A	8731.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:2,322:0.99:324
chr7	1883789	rs113710684	A	T	6566.77	.	AC=1;AF=0.500;AN=2;DB;DP=701;set=Intersection	GT:AD:AF:DP	0/1:369,328:0.47:697
chr7	1886805	rs11762803	A	G	1228.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:30,48:0.62:78
chr7	1886865	rs6954521	C	A	3347.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.213;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=1.127;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.57;ReadPosRankSum=-1.791;SOR=0.815;set=HC	GT:AD:AF:DP	0/1:114,88:0.44:202
chr7	1886872	rs6978048	T	G	3487.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.578;ClippingRankSum=0.000;DB;DP=217;ExcessHet=3.0103;FS=1.081;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.22;ReadPosRankSum=-1.795;SOR=0.805;set=HC	GT:AD:AF:DP	0/1:119,96:0.45:215
chr7	1886937	rs6954673	C	T	3224.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:155,149:0.49:304
chr7	1887362	rs6957894	G	A	4844.77	.	AC=1;AF=0.500;AN=2;DB;DP=465;set=Intersection	GT:AD:AF:DP	0/1:234,227:0.49:461
chr7	1887421	rs112747351	G	T	4948.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;MQ=59.96;set=Intersection	GT:AD:AF:DP	0/1:157,149:0.49:306
chr7	1887442	rs6959164	C	G	4103.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;MQ=59.95;set=Intersection	GT:AD:AF:DP	0/1:118,107:0.48:225
chr7	1887523	rs6978725	A	G	774.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:24,29:0.55:53
chr7	1888185	rs59248873	A	G	583.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:12,16:0.57:28
chr7	1888200	rs73286668	G	T	273.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:18,12:0.40:30
chr7	1888294	rs4719320	C	G	4340.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr7	1888683	.	TACACACACAC	T,TAC	2997	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.37;FR=0.5000,0.5000;HP=1;HapScore=1;MGOF=22;MMLQ=24;MQ=60.0;NF=4,4;NR=119,119;PP=85,2997;QD=0.715447154472;SC=GGTGTACATGTACACACACAC;SbPval=0.61;Source=Platypus;TC=143;TCF=5;TCR=138;TR=123,123;WE=1888700;WS=1888672;set=Platypus	GT:AF:DP	0/1:0.86:143
chr7	1888711	rs147291046	A	C	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.510;ClippingRankSum=-0.000;DB;DP=213;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.80;ReadPosRankSum=3.067;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:5,6:0.55:11
chr7	1888714	.	G	GCACACA	52.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.191;ClippingRankSum=-0.000;DP=206;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.79;ReadPosRankSum=3.067;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:5,6:0.55:11
chr7	1888720	.	G	A	70.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.419;ClippingRankSum=-0.000;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.43;ReadPosRankSum=3.067;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:5,6:0.55:11
chr7	1894022	rs12699404	A	T	5446.77	.	AC=1;AF=0.500;AN=2;DB;DP=581;set=Intersection	GT:AD:AF:DP	0/1:312,263:0.46:575
chr7	1894116	rs7810038	T	C	2933.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.017;ClippingRankSum=0.000;DB;DP=339;ExcessHet=3.0103;FS=1.799;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.76;ReadPosRankSum=-1.313;SOR=0.584;set=HC	GT:AD:AF:DP	0/1:178,157:0.47:335
chr7	1914089	.	A	G	1395.77	.	AC=1;AF=0.500;AN=2;DP=95;set=Intersection	GT:AD:AF:DP	0/1:35,59:0.63:94
chr7	1914350	rs60238952	A	G	420.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:29,18:0.38:47
chr7	1938001	rs61751744	G	A	4859.77	.	AC=1;AF=0.500;AN=2;DB;DP=460;set=Intersection	GT:AD:AF:DP	0/1:228,229:0.50:457
chr7	1976432	rs1801550	C	T	4057.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:158,177:0.53:335
chr7	1976457	rs1801368	C	T	3379.77	.	AC=1;AF=0.500;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	0/1:215,164:0.43:379
chr7	1976556	rs2280550	G	A	4971.77	.	AC=1;AF=0.500;AN=2;DB;DP=609;set=Intersection	GT:AD:AF:DP	0/1:346,254:0.42:600
chr7	2020003	.	TC	T	2164	.	AC=1;AF=0.500;AN=2;BRF=0.32;FR=0.5000;HP=7;HapScore=1;MGOF=10;MMLQ=29;MQ=58.89;NF=14;NR=4;PP=2164;QD=121.833333333;SC=ATCTGCCTCCTCCCCCGCAGG;SbPval=0.83;Source=Platypus;TC=68;TCF=47;TCR=21;TR=18;WE=2020019;WS=2019986;set=Platypus	GT:AD:AF:DP	1/0:50,18:0.26:68
chr7	2020011	.	A	AGGACACACCTGGGCGTATCCGCCTCCTCTCTGGG	1758.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.723;ClippingRankSum=0.000;DP=92;ExcessHet=3.0103;FS=24.254;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.45;ReadPosRankSum=0.273;SOR=3.802;set=HC	GT:AD:AF:DP	0/1:50,25:0.33:75
chr7	2020423	rs73049803	G	A	1769.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:81,82:0.50:163
chr7	2041589	rs142511367	AG	A	2354.73	.	AC=1;AF=0.500;AN=2;DB;DP=211;MQ=60.05;set=Intersection	GT:AD:AF:DP	0/1:127,81:0.39:208
chr7	2041638	rs1107591	G	A	5441.77	.	AC=1;AF=0.500;AN=2;DB;DP=439;MQ=60.02;set=Intersection	GT:AD:AF:DP	0/1:184,249:0.58:433
chr7	2041887	rs4721296	A	C	2699.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr7	2108982	rs73048940	G	C	764.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:43,34:0.44:77
chr7	2119174	rs7805774	C	T	3249.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr7	2252986	rs1002170	G	A	16561.77	.	AC=2;AF=1.00;AN=2;DB;DP=616;set=Intersection	GT:AD:AF:DP	1/1:0,606:1.00:606
chr7	2258899	rs1639916	G	A	2060.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr7	2260499	rs1637731	C	T	2815.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr7	2260715	rs1639917	G	T	2296.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr7	2269552	rs1637728	G	T	726.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr7	2278646	.	AT	A	200.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.506;ClippingRankSum=0.000;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.17;ReadPosRankSum=-0.745;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:16,12:0.43:28
chr7	2278648	.	ATATATATATATATAT	A,AATATATATATATAT	1807.73	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;BaseQRankSum=1.628;ClippingRankSum=0.000;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=64.56;ReadPosRankSum=2.155;SOR=1.697;set=HC	GT:AD:AF:DP	1/2:2,12,14:0.43,0.50:28
chr7	2278650	.	ATATATATATATAT	A	254.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.574;ClippingRankSum=0.000;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.10;ReadPosRankSum=2.057;SOR=1.009;set=HC	GT:AD:AF:DP	0/1:14,14:0.50:28
chr7	2279851	rs6962067	T	C	4287.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr7	2280105	rs62442508	G	A	2413.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr7	2281083	.	A	ATT	419.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.254;ClippingRankSum=0.000;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.99;ReadPosRankSum=0.702;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:1,19:0.95:20
chr7	2284416	rs34185397	C	G	615.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:20,24:0.55:44
chr7	2290314	rs12699806	C	T	802.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.286;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=3.360;MLEAC=1;MLEAF=0.500;MQ=53.41;MQRankSum=-0.478;QD=21.70;ReadPosRankSum=1.303;SOR=0.252;set=HC	GT:AD:AF:DP	0/1:16,21:0.57:37
chr7	2290317	rs60298419	T	G	844.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.979;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=3.368;MLEAC=1;MLEAF=0.500;MQ=53.59;MQRankSum=-0.598;QD=22.23;ReadPosRankSum=1.572;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:17,21:0.55:38
chr7	2290319	rs373496719	TC	T	835.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.628;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=3.331;MLEAC=1;MLEAF=0.500;MQ=54.06;MQRankSum=-0.293;QD=21.43;ReadPosRankSum=1.259;SOR=0.250;set=HC	GT:AD:AF:DP	0/1:17,22:0.56:39
chr7	2290328	rs10230814	C	T	880.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.280;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=5.360;MLEAC=1;MLEAF=0.500;MQ=54.81;MQRankSum=-0.291;QD=21.48;ReadPosRankSum=1.014;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:18,23:0.56:41
chr7	2290336	rs10249180	T	G	918.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.721;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=1.308;MLEAC=1;MLEAF=0.500;MQ=55.92;MQRankSum=-0.343;QD=19.55;ReadPosRankSum=1.832;SOR=0.409;set=HC	GT:AD:AF:DP	0/1:23,24:0.51:47
chr7	2290372	rs10230822	C	T	747.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:42,36:0.46:78
chr7	2290522	rs1799832	C	T	3107.77	.	AC=1;AF=0.500;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	0/1:222,161:0.42:383
chr7	2290685	rs1062492	C	T	690.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:31,31:0.50:62
chr7	2292881	rs3075440	C	CTG	14810.73	.	AC=2;AF=1.00;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	1/1:0,337:1.00:337
chr7	2294607	rs118040378	C	T	1994.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:122,99:0.45:221
chr7	2296493	rs2302070	A	G	2312.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr7	2297006	rs6888	A	G	5589.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr7	2297212	rs62442513	C	T	1308.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:85,58:0.41:143
chr7	2303109	rs2286207	G	A	869.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:68,41:0.38:109
chr7	2303986	rs2286206	T	C	6298.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr7	2304191	rs2286205	A	C	1270.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr7	2309158	rs375189373	TA	T	215.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.324;ClippingRankSum=0.000;DB;DP=231;ExcessHet=3.0103;FS=2.467;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=1.927;QD=0.99;ReadPosRankSum=-0.238;SOR=0.966;set=HC	GT:AD:AF:DP	0/1:164,55:0.25:219
chr7	2314652	rs878534	G	A	1372.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:43,54:0.56:97
chr7	2315008	rs2398667	G	C	2744.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr7	2349366	.	C	CA	1055.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.411;ClippingRankSum=0.000;DP=230;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.000;QD=5.03;ReadPosRankSum=0.708;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:128,82:0.39:210
chr7	2349470	rs10479970	T	C	4013.77	.	AC=1;AF=0.500;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	0/1:231,194:0.46:425
chr7	2349608	rs7805462	G	A	700.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:20,25:0.56:45
chr7	2394746	rs9690787	T	C	484.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:29,26:0.47:55
chr7	2400306	rs953770	T	C	2756.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:94,124:0.57:218
chr7	2403894	.	CA	C	116.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.150;ClippingRankSum=0.000;DP=141;ExcessHet=3.0103;FS=6.114;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.682;QD=0.93;ReadPosRankSum=0.321;SOR=1.371;set=HC	GT:AD:AF:DP	0/1:96,29:0.23:125
chr7	2405885	rs2286204	C	A	561.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:21,22:0.51:43
chr7	2406737	rs60382761	CA	C	868.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.644;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.000;QD=8.43;ReadPosRankSum=1.177;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:26,77:0.75:103
chr7	2409035	rs2301944	C	T	2211.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr7	2412493	rs1548595	C	T	1143.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:41,51:0.55:92
chr7	2414107	.	G	T	1592.77	.	AC=1;AF=0.500;AN=2;DP=131;set=Intersection	GT:AD:AF:DP	0/1:59,65:0.52:124
chr7	2414142	rs886632	A	G	5552.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr7	2414365	rs884565	A	G	6617.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr7	2416822	rs2240347	A	G	3303.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:173,153:0.47:326
chr7	2418116	rs6461350	T	A	1129.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:21,45:0.68:66
chr7	2418645	rs6461351	A	G	1555.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr7	2434522	rs1978169	G	A	9134.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:0,351:1.00:351
chr7	2434594	rs10607224	AT	A	660.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.333;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=0.583;QD=12.24;ReadPosRankSum=0.741;SOR=0.598;set=HC	GT:AD:AF:DP	1/1:6,48:0.89:54
chr7	2480040	rs144675889	ATG	A	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.432;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=5.136;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=2.879;QD=0.58;ReadPosRankSum=-0.210;SOR=0.127;set=HC	GT:AD:AF:DP	0/1:56,11:0.16:67
chr7	2515382	rs5881927	G	GC	12886.73	.	AC=2;AF=1.00;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	1/1:0,363:1.00:363
chr7	2552986	rs286560	A	C	7747.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr7	2557266	rs755179	T	C	4907.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:2,188:0.99:190
chr7	2565268	rs893239	C	A	8810.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:1,319:1.00:320
chr7	2566028	rs12700028	G	A	3561.77	.	AC=1;AF=0.500;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	0/1:194,165:0.46:359
chr7	2566433	rs13225716	G	A	2894.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:159,135:0.46:294
chr7	2577691	rs1043294	C	G	1046.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:48,49:0.51:97
chr7	2577781	rs1043291	T	C	2324.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:88,104:0.54:192
chr7	2578237	rs4719552	TC	CT	7572.77	.	AC=1;AF=0.500;AN=2;DB;DP=445;JOINED;set=Intersection	GT:AD:AF:DP	0/1:240,200:0.45:440
chr7	2578434	rs4721763	G	T	3810.77	.	AC=1;AF=0.500;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	0/1:235,184:0.44:419
chr7	2578455	rs4721764	G	A	2955.77	.	AC=1;AF=0.500;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	0/1:205,144:0.41:349
chr7	2580914	rs62442586	C	T	3350.77	.	AC=1;AF=0.500;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	0/1:173,167:0.49:340
chr7	2581594	rs34947605	G	A	1028.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:58,48:0.45:106
chr7	2581994	rs3735104	T	C	3391.77	.	AC=1;AF=0.500;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	0/1:174,169:0.49:343
chr7	2582153	rs138295649	C	CCCCCAGCCTCCCGGGTGT	14382.73	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr7	2582233	rs3735106	A	G	8761.77	.	AC=1;AF=0.500;AN=2;DB;DP=877;MQ=61.75;set=Intersection	GT:AD:AF:DP	0/1:461,411:0.47:872
chr7	2582381	rs61673178	T	A	11274.77	.	AC=1;AF=0.500;AN=2;DB;DP=1314;set=Intersection	GT:AD:AF:DP	0/1:679,607:0.47:1286
chr7	2582584	rs34108550	G	A	6883.77	.	AC=1;AF=0.500;AN=2;DB;DP=691;set=Intersection	GT:AD:AF:DP	0/1:355,324:0.48:679
chr7	2583165	rs13240450	G	A	3171.77	.	AC=1;AF=0.500;AN=2;DB;DP=347;MQ=59.98;set=Intersection	GT:AD:AF:DP	0/1:196,148:0.43:344
chr7	2583328	rs61753095	C	T	5267.77	.	AC=1;AF=0.500;AN=2;DB;DP=528;set=Intersection	GT:AD:AF:DP	0/1:272,250:0.48:522
chr7	2584523	rs34720091	T	C	513.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:38,23:0.38:61
chr7	2587122	rs2164688	T	C	1919.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:53,89:0.63:142
chr7	2598757	rs6963930	T	C	627.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:22,29:0.57:51
chr7	2598908	rs34580685	T	C	615.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:39,31:0.44:70
chr7	2604767	rs71550361	AGT	A	2409.73	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:99,92:0.48:191
chr7	2604816	rs35243077	C	T	2433.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:179,128:0.42:307
chr7	2606934	rs10488610	G	A	440.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:16,17:0.52:33
chr7	2611878	rs2917751	T	C	7719.77	.	AC=1;AF=0.500;AN=2;DB;DP=830;set=Intersection	GT:AD:AF:DP	0/1:430,390:0.48:820
chr7	2612294	rs2969042	TC	AA	6880.77	.	AC=1;AF=0.500;AN=2;DB;DP=390;JOINED;set=Intersection	GT:AD:AF:DP	0/1:204,180:0.47:384
chr7	2613042	rs2304540	G	C	902.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:43,39:0.48:82
chr7	2619363	rs377084597	G	GTGTGTC	3257.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.924;ClippingRankSum=0.000;DB;DP=237;ExcessHet=3.0103;FS=5.490;MLEAC=1;MLEAF=0.500;MQ=60.77;MQRankSum=2.196;QD=17.33;ReadPosRankSum=1.335;SOR=0.371;set=HC	GT:AD:AF:DP	0/1:79,109:0.58:188
chr7	2621567	rs7798469	T	C	289.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:20,14:0.41:34
chr7	2622101	rs1550204	C	T	1201.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:49,49:0.50:98
chr7	2625838	rs2257285	C	T	3680.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:163,174:0.52:337
chr7	2626038	rs3217437	CCAGGGAATGG	C	786.73	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:14,21:0.60:35
chr7	2627310	rs2917733	T	A	895.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:45,39:0.46:84
chr7	2632477	rs2917730	A	G	254.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:10,10:0.50:20
chr7	2640897	rs2969057	T	C	251.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:6,10:0.62:16
chr7	2640985	rs4506100	G	C	1063.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:24,51:0.68:75
chr7	2641059	.	C	CT	63.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.584;ClippingRankSum=0.000;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.69;ReadPosRankSum=-3.179;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:76,17:0.18:93
chr7	2644519	rs2293404	C	T	8255.77	.	AC=1;AF=0.500;AN=2;DB;DP=911;set=Intersection	GT:AD:AF:DP	0/1:479,424:0.47:903
chr7	2645526	rs10950797	G	A	3167.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:125,152:0.55:277
chr7	2645552	rs2293407	A	G	3074.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:120,150:0.56:270
chr7	2646723	rs1464967	A	G	2835.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:161,145:0.47:306
chr7	2646950	rs1056568	T	G	1069.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:43,51:0.54:94
chr7	2649673	rs3735108	T	C	3839.77	.	AC=1;AF=0.500;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	0/1:231,185:0.44:416
chr7	2649704	rs3735109	T	G	5800.77	.	AC=1;AF=0.500;AN=2;DB;DP=660;set=Intersection	GT:AD:AF:DP	0/1:352,298:0.46:650
chr7	2649819	rs3735110	C	T	7866.77	.	AC=1;AF=0.500;AN=2;DB;DP=830;set=Intersection	GT:AD:AF:DP	0/1:424,389:0.48:813
chr7	2649932	rs3735111	T	G	2162.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:78,88:0.53:166
chr7	2698459	rs116693587	A	C	4632.77	.	AC=1;AF=0.500;AN=2;DB;DP=442;set=Intersection	GT:AD:AF:DP	0/1:237,197:0.45:434
chr7	2699524	rs139527284	ACT	A	401.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.178;ClippingRankSum=0.000;DB;DP=315;ExcessHet=3.0103;FS=3.816;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.37;ReadPosRankSum=-1.214;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:245,48:0.16:293
chr7	2699687	rs56409742	C	CG	14111.73	.	AC=2;AF=1.00;AN=2;DB;DP=423;MQ=60.18;set=Intersection	GT:AD:AF:DP	1/1:0,400:1.00:400
chr7	2749565	rs13224990	G	A	494.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr7	2751869	rs76002928	G	A	286.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:9,12:0.57:21
chr7	2752487	rs7776970	G	A	3440.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:188,173:0.48:361
chr7	2773035	rs34004158	C	CAT	4380.73	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:206,120:0.37:326
chr7	2834869	rs2533886	C	T	1351.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:53,58:0.52:111
chr7	2946188	rs41362545	C	T	1862.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:79,75:0.49:154
chr7	2946461	rs1124581	T	C	3013.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:133,132:0.50:265
chr7	2954801	rs1182157	T	C	4720.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr7	2962753	rs2527509	G	A	4212.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr7	2966445	rs1182136	T	G	5934.77	.	AC=1;AF=0.500;AN=2;DB;DP=559;set=Intersection	GT:AD:AF:DP	0/1:283,275:0.49:558
chr7	2968361	rs2527506	G	A	4040.77	.	AC=1;AF=0.500;AN=2;DB;DP=475;set=Intersection	GT:AD:AF:DP	0/1:269,201:0.43:470
chr7	2968486	rs1183431	G	C	1072.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:42,43:0.51:85
chr7	2971977	rs5881948	T	TG	933.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr7	2977732	rs17257454	T	C	4158.77	.	AC=1;AF=0.500;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	0/1:169,191:0.53:360
chr7	2985361	rs3839716	GAC	G	270.73	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:36,15:0.29:51
chr7	3179968	rs7779230	T	G	23475.77	.	AC=2;AF=1.00;AN=2;DB;DP=551;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.72;SOR=1.012;set=HC	GT:AD:AF:DP	1/1:0,537:1.00:537
chr7	3179973	rs7791857	G	C	23181.77	.	AC=2;AF=1.00;AN=2;DB;DP=529;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.93;SOR=1.052;set=HC	GT:AD:AF:DP	1/1:0,516:1.00:516
chr7	3179991	rs7779245	T	C	12066.77	.	AC=2;AF=1.00;AN=2;DB;DP=444;set=Intersection	GT:AD:AF:DP	1/1:0,438:1.00:438
chr7	3180550	rs11374295	C	CT	619.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.085;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=0.758;QD=8.61;ReadPosRankSum=0.160;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:25,47:0.65:72
chr7	3180657	rs6964682	C	T	10685.77	.	AC=2;AF=1.00;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	1/1:0,407:1.00:407
chr7	3187085	rs6954885	T	A	997.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:31,42:0.58:73
chr7	3188513	rs7810868	C	G	350.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:9,15:0.62:24
chr7	3188549	rs10257432	T	C	246.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:14,13:0.48:27
chr7	3188576	rs10257447	T	C	379.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:18,19:0.51:37
chr7	3188712	rs10254519	A	C	659.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:43,33:0.43:76
chr7	3188738	rs34925290	G	C	368.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:37,22:0.37:59
chr7	3197867	rs4634530	T	C	731.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:62,42:0.40:104
chr7	3205580	rs34343308	G	A	297.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:10,14:0.58:24
chr7	3205581	rs7782623	C	T	178.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:12,10:0.45:22
chr7	3205635	rs7801306	A	G	489.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:26,26:0.50:52
chr7	3205705	rs10951088	T	G	2329.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr7	3205763	rs10951089	A	C	2433.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:2,94:0.98:96
chr7	3341390	rs10228086	T	C	67.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.68;ReadPosRankSum=0.241;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:2,5:0.71:7
chr7	4026944	rs7785899	C	G	2485.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:123,115:0.48:238
chr7	4150203	rs62438179	G	C	233.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:6,10:0.62:16
chr7	4152863	rs6956409	G	C	5242.77	.	AC=1;AF=0.500;AN=2;DB;DP=531;set=Intersection	GT:AD:AF:DP	0/1:270,253:0.48:523
chr7	4153824	rs2141076	A	G	2275.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:87,106:0.55:193
chr7	4171853	rs113599151	GT	G	11416.73	.	AC=1;AF=0.500;AN=2;DB;DP=733;set=Intersection	GT:AD:AF:DP	0/1:380,340:0.47:720
chr7	4172006	rs13224870	C	T	9283.77	.	AC=1;AF=0.500;AN=2;DB;DP=925;set=Intersection	GT:AD:AF:DP	0/1:462,456:0.50:918
chr7	4185592	rs608271	A	G	6321.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr7	4185636	rs6943463	G	A	1662.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:69,69:0.50:138
chr7	4189075	rs659182	G	C	14699.77	.	AC=2;AF=1.00;AN=2;DB;DP=541;set=Intersection	GT:AD:AF:DP	1/1:0,536:1.00:536
chr7	4189123	rs4720177	G	A	3352.77	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:164,162:0.50:326
chr7	4213749	rs4723444	T	A	1163.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:45,51:0.53:96
chr7	4213877	rs601424	T	C	9477.77	.	AC=2;AF=1.00;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	1/1:0,357:1.00:357
chr7	4213940	rs671756	T	C	7748.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr7	4213975	rs671694	A	G	5696.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr7	4214041	rs4723445	C	T	636.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.520;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=3.706;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.08;ReadPosRankSum=-2.493;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:59,31:0.34:90
chr7	4214046	rs600537	T	C	2928.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr7	4215298	rs4720185	T	C	13932.77	.	AC=2;AF=1.00;AN=2;DB;DP=518;set=Intersection	GT:AD:AF:DP	1/1:1,509:1.00:510
chr7	4217969	rs649494	T	A	2061.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr7	4259953	rs13224192	G	T	629.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:27,27:0.50:54
chr7	4267072	rs597636	T	A	1994.73	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:130,108:0.45:238
chr7	4272845	rs2880459	G	A	6163.77	.	AC=1;AF=0.500;AN=2;DB;DP=598;set=Intersection	GT:AD:AF:DP	0/1:298,297:0.50:595
chr7	4308362	rs8514	C	T	9602.77	.	AC=2;AF=1.00;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	1/1:0,361:1.00:361
chr7	4490854	rs314605	C	T	8087.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr7	4490934	rs442775	A	G	2319.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.633;ClippingRankSum=0.000;DB;DP=223;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.45;ReadPosRankSum=0.070;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:111,111:0.50:222
chr7	4490934	.	AC	GT	1131	.	AC=1;AF=0.500;AN=2;BRF=0.43;FR=0.5000;HP=1;HapScore=2;MGOF=15;MMLQ=22;MQ=60.0;NF=27;NR=45;PP=1131;QD=16.4509427064;SC=GGTACCCTTGACGGAAATAGA;SbPval=0.53;Source=Platypus;TC=146;TCF=55;TCR=91;TR=72;WE=4490943;WS=4490924;set=Platypus	GT:AD:AF:DP	0/1:74,72:0.49:146
chr7	4490935	rs369198	C	T	7837.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.79;SOR=1.087;set=HC	GT:AD:AF:DP	1/1:0,219:1.00:219
chr7	4715012	.	G	GT	310.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.246;ClippingRankSum=0.000;DP=192;ExcessHet=3.0103;FS=1.919;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=2.202;QD=2.14;ReadPosRankSum=1.586;SOR=1.019;set=HC	GT:AD:AF:DP	0/1:108,37:0.26:145
chr7	4780514	rs3087749	G	T	26018.77	.	AC=2;AF=1.00;AN=2;DB;DP=1001;set=Intersection	GT:AD:AF:DP	1/1:0,991:1.00:991
chr7	4802029	rs6976790	T	G	2581.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr7	4823178	rs11764272	G	T	2934.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.887;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=5.216;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.96;ReadPosRankSum=0.864;SOR=0.388;set=HC	GT:AD:AF:DP	0/1:63,77:0.55:140
chr7	4823186	rs11764275	G	T	2989.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.641;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=5.153;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.20;ReadPosRankSum=0.784;SOR=0.400;set=HC	GT:AD:AF:DP	0/1:62,79:0.56:141
chr7	4823971	rs17135121	C	T	2948.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:140,140:0.50:280
chr7	4825307	rs11772411	T	A	3455.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.524;ClippingRankSum=0.000;DB;DP=240;ExcessHet=3.0103;FS=5.390;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.71;ReadPosRankSum=-2.856;SOR=1.027;set=HC	GT:AD:AF:DP	0/1:137,98:0.42:235
chr7	4825314	rs11768079	C	T	3242.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.830;ClippingRankSum=0.000;DB;DP=226;ExcessHet=3.0103;FS=4.721;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.61;ReadPosRankSum=-1.984;SOR=0.996;set=HC	GT:AD:AF:DP	0/1:135,87:0.39:222
chr7	4827330	rs17135128	C	T	3366.77	.	AC=1;AF=0.500;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	0/1:175,165:0.49:340
chr7	4827480	rs59441267	T	C	552.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:36,28:0.44:64
chr7	4827972	rs3816851	G	A	363.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:28,19:0.40:47
chr7	4828077	rs17829969	C	T	744.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:44,36:0.45:80
chr7	4828405	rs3750013	G	A	1445.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:62,57:0.48:119
chr7	4828593	rs3750012	T	C	3577.77	.	AC=1;AF=0.500;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	0/1:207,180:0.47:387
chr7	4828628	rs7803727	T	C	2556.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:165,130:0.44:295
chr7	4829741	rs749404	T	C	2029.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:79,91:0.54:170
chr7	4829757	rs3031279	C	CCT	4035.73	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:108,106:0.50:214
chr7	4839163	rs3736241	A	C	7112.77	.	AC=1;AF=0.500;AN=2;DB;DP=648;set=Intersection	GT:AD:AF:DP	0/1:316,321:0.50:637
chr7	4839781	rs3816855	C	T	4535.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.348;ClippingRankSum=0.000;DB;DP=230;ExcessHet=3.0103;FS=2.277;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.34;ReadPosRankSum=1.105;SOR=0.542;set=HC	GT:AD:AF:DP	0/1:108,115:0.52:223
chr7	4839784	rs6977412	G	A	4538.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.183;ClippingRankSum=0.000;DB;DP=237;ExcessHet=3.0103;FS=2.221;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.73;ReadPosRankSum=1.418;SOR=0.561;set=HC	GT:AD:AF:DP	0/1:112,118:0.51:230
chr7	4839882	rs3816854	T	C	2165.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:160,118:0.42:278
chr7	4841313	rs6966329	A	G	2296.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:73,102:0.58:175
chr7	4841470	rs414035	T	C	4247.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr7	4841655	rs58207166	T	C	2375.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:73,108:0.60:181
chr7	4845312	rs2306919	T	G	2731.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:149,133:0.47:282
chr7	4862259	rs3816852	A	G	714.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:21,31:0.60:52
chr7	4871879	rs3830494	C	CAT	7629.73	.	AC=1;AF=0.500;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	0/1:143,195:0.58:338
chr7	4874420	rs2292498	G	C	1261.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:117,69:0.37:186
chr7	4876057	rs3763384	C	T	1750.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:87,81:0.48:168
chr7	4900095	rs1553960	A	G	2746.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:116,121:0.51:237
chr7	4900341	rs17135247	G	A	10160.77	.	AC=1;AF=0.500;AN=2;DB;DP=967;set=Intersection	GT:AD:AF:DP	0/1:470,483:0.51:953
chr7	4901385	rs3750009	A	C	762.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:33,30:0.48:63
chr7	4901465	rs3833677	G	GCACGTCCCCCACCACCGCGACCTT	140.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.074;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.47;MQRankSum=1.556;QD=9.38;ReadPosRankSum=-1.471;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:10,5:0.33:15
chr7	4946973	rs10951715	A	G	877.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:31,42:0.58:73
chr7	4959789	rs932060	G	A	3196.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:107,85:0.44:192
chr7	4959807	rs932061	G	A	3579.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:137,106:0.44:243
chr7	4965195	rs60810442	C	T	1521.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:86,75:0.47:161
chr7	4965333	rs67781197	T	C	417.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:14,17:0.55:31
chr7	5023420	rs6965043	A	G	2860.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.25;QD=26.25;SOR=0.787;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr7	5026170	rs57714855	TA	T	1119.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.350;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.72;MQRankSum=-1.401;QD=16.00;ReadPosRankSum=0.882;SOR=0.548;set=HC	GT:AD:AF:DP	1/1:7,63:0.90:70
chr7	5036175	rs78669346	C	T	2844.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:122,133:0.52:255
chr7	5071621	rs10272746	G	A	1123.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:44,48:0.52:92
chr7	5096958	rs11975068	T	C	19313.77	.	AC=2;AF=1.00;AN=2;DB;DP=734;set=Intersection	GT:AD:AF:DP	1/1:2,728:1.00:730
chr7	5104275	rs12674330	G	A	2687.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:116,121:0.51:237
chr7	5104359	rs12668616	G	A	2442.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:106,109:0.51:215
chr7	5105133	rs12334144	C	T	6398.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr7	5105208	rs36026500	C	T	1134.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:82,56:0.41:138
chr7	5112108	rs6862	G	T	4125.77	.	AC=1;AF=0.500;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	0/1:216,203:0.48:419
chr7	5112174	rs113241650	G	A	2298.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:106,125:0.54:231
chr7	5112530	rs3801055	T	C	794.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:39,35:0.47:74
chr7	5112554	rs1130329	A	C	1107.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:52,50:0.49:102
chr7	5161422	rs377350567	C	T	257.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=40.00;MQRankSum=0.000;QD=18.41;ReadPosRankSum=-0.812;SOR=1.765;set=HC	GT:AD:AF:DP	0/1:4,10:0.71:14
chr7	5161512	rs117992329	G	T	3083.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr7	5161552	rs141496445	G	A	1455.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:135,77:0.36:212
chr7	5161640	rs62441986	G	C	3476.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.469;ClippingRankSum=0.000;DB;DP=240;ExcessHet=3.0103;FS=2.293;MLEAC=1;MLEAF=0.500;MQ=53.77;MQRankSum=-0.468;QD=14.55;ReadPosRankSum=-0.902;SOR=0.543;set=HC	GT:AD:AF:DP	0/1:86,153:0.64:239
chr7	5161858	rs11289360	GA	G	1205.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.194;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.44;MQRankSum=-2.023;QD=6.03;ReadPosRankSum=1.256;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:108,92:0.46:200
chr7	5161889	.	G	GT	163.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.040;ClippingRankSum=0.000;DP=148;ExcessHet=3.0103;FS=2.239;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.44;ReadPosRankSum=-0.341;SOR=0.405;set=HC	GT:AD:AF:DP	0/1:90,24:0.21:114
chr7	5166400	rs73318773	G	A	955.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:72,43:0.37:115
chr7	5166500	rs112252777	A	G	2465.77	.	AC=1;AF=0.500;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	0/1:203,136:0.40:339
chr7	5166683	rs62441988	A	G	777.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:18,32:0.64:50
chr7	5167160	rs9655048	C	A	702.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:46,32:0.41:78
chr7	5167408	rs888584	G	A	2277.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:85,104:0.55:189
chr7	5172011	rs73057804	C	T	408.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:35,19:0.35:54
chr7	5172045	rs200698976	T	TG	488.73	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:46,17:0.27:63
chr7	5172052	rs113343750	G	T	456.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:58,16:0.22:74
chr7	5172088	rs80233906	A	G	1102.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.312;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=0.745;MLEAC=1;MLEAF=0.500;MQ=57.35;MQRankSum=-11.202;QD=8.17;ReadPosRankSum=-0.086;SOR=0.589;set=HC	GT:AD:AF:DP	0/1:101,34:0.25:135
chr7	5172095	.	CTT	C	1210.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.080;ClippingRankSum=0.000;DP=139;ExcessHet=3.0103;FS=2.511;MLEAC=1;MLEAF=0.500;MQ=57.57;MQRankSum=-10.492;QD=8.77;ReadPosRankSum=-0.594;SOR=0.478;set=HC	GT:AD:AF:DP	0/1:102,36:0.26:138
chr7	5172099	.	T	TTG	1225.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.086;ClippingRankSum=0.000;DP=138;ExcessHet=3.0103;FS=2.490;MLEAC=1;MLEAF=0.500;MQ=57.55;MQRankSum=-10.449;QD=8.95;ReadPosRankSum=-0.802;SOR=0.491;set=HC	GT:AD:AF:DP	0/1:101,36:0.26:137
chr7	5172102	rs77898154	A	G	1198.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.630;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=1.522;MLEAC=1;MLEAF=0.500;MQ=57.74;MQRankSum=-10.215;QD=8.50;ReadPosRankSum=-0.558;SOR=0.554;set=HC	GT:AD:AF:DP	0/1:104,37:0.26:141
chr7	5172115	rs73057805	A	G	776.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:108,48:0.31:156
chr7	5172176	rs67170096	T	G	931.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:112,56:0.33:168
chr7	5172208	rs74491186	C	T	1857.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:105,55:0.34:160
chr7	5172213	rs72125963	TCTCCCA	T	1838.73	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:102,52:0.34:154
chr7	5172223	rs77639783	G	A	1834.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:88,52:0.37:140
chr7	5172282	rs73057807	A	G	766.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.474;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.76;MQRankSum=-1.327;QD=10.80;ReadPosRankSum=1.211;SOR=0.790;set=HC	GT:AD:AF:DP	0/1:46,25:0.35:71
chr7	5172295	rs73057808	A	G	664.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.681;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.69;MQRankSum=-1.304;QD=11.87;ReadPosRankSum=1.216;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:36,20:0.36:56
chr7	5172305	.	TTG	T	670.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.574;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=1.249;MLEAC=1;MLEAF=0.500;MQ=59.65;MQRankSum=-1.236;QD=13.41;ReadPosRankSum=0.481;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:31,19:0.38:50
chr7	5172316	rs66755282	T	G	529.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.708;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.57;MQRankSum=-1.212;QD=13.58;ReadPosRankSum=0.549;SOR=0.578;set=HC	GT:AD:AF:DP	0/1:24,15:0.38:39
chr7	5254227	rs4587243	C	G	13264.77	.	AC=2;AF=1.00;AN=2;DB;DP=491;set=Intersection	GT:AD:AF:DP	1/1:0,465:1.00:465
chr7	5254447	rs28607283	C	T	2052.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:77,84:0.52:161
chr7	5257490	rs7791896	T	C	2869.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr7	5257573	rs1134489	G	A	2757.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:150,132:0.47:282
chr7	5262151	rs62441068	C	T	681.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:45,30:0.40:75
chr7	5267639	rs73048056	G	C	2652.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr7	5269424	rs7785898	A	C	1550.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:57,62:0.52:119
chr7	5331307	rs12667188	A	G	221.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr7	5334472	.	CCT	C	256.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.723;ClippingRankSum=0.000;DP=247;ExcessHet=3.0103;FS=0.782;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.07;ReadPosRankSum=-0.168;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:211,28:0.12:239
chr7	5336538	.	G	GGCCCCGGCCCACTGTGCAC	1420	.	AC=1;AF=0.500;AN=2;BRF=0.58;FR=0.5000;HP=1;HapScore=1;MGOF=8;MMLQ=24;MQ=54.9;NF=1;NR=3;PP=1420;QD=361.75;SC=GGGCGGATCAGGCCCCGGCCC;SbPval=0.41;Source=Platypus;TC=8;TCF=1;TCR=7;TR=4;WE=5336546;WS=5336528;set=Platypus	GT:AD:AF:DP	0/1:4,4:0.50:8
chr7	5336855	rs137903684	TCCCTTCTCTGTC	T	1494.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.600;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.24;ReadPosRankSum=1.156;SOR=0.626;set=HC	GT:AD:AF:DP	0/1:64,41:0.39:105
chr7	5336885	rs13244318	C	T	1587.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:52,42:0.45:94
chr7	5338714	rs6950111	T	C	1107.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.651;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=4.548;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.89;ReadPosRankSum=0.072;SOR=1.039;set=HC	GT:AD:AF:DP	0/1:57,55:0.49:112
chr7	5338770	rs6946155	A	G	1375.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:54,66:0.55:120
chr7	5340002	rs34551990	C	G	388.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:8,18:0.69:26
chr7	5347295	rs7794563	A	G	499.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr7	5347749	rs9639976	G	A	193.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:11,9:0.45:20
chr7	5348725	rs186045924	G	A	566.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:15,23:0.61:38
chr7	5352659	rs138591330	G	T	1268.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.932;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.877;MLEAC=1;MLEAF=0.500;MQ=60.38;MQRankSum=1.447;QD=14.93;ReadPosRankSum=-1.371;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:49,36:0.42:85
chr7	5352665	.	T	TGAGGAG	1126.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.799;ClippingRankSum=0.000;DP=95;ExcessHet=3.0103;FS=1.118;MLEAC=1;MLEAF=0.500;MQ=60.92;MQRankSum=-1.564;QD=13.41;ReadPosRankSum=0.142;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:48,36:0.43:84
chr7	5352949	rs76882791	G	C	929.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:41,42:0.51:83
chr7	5353253	rs140781391	G	T	651.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:27,29:0.52:56
chr7	5353344	rs12532973	G	A	411.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:32,20:0.38:52
chr7	5353600	rs11292393	GT	G	130.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.027;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=1.657;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.22;ReadPosRankSum=0.857;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:19,12:0.39:31
chr7	5359916	rs56056769	C	T	576.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:28,27:0.49:55
chr7	5364041	rs1056173	G	A	671.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:37,29:0.44:66
chr7	5369522	rs73051980	G	C	3379.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:166,160:0.49:326
chr7	5372406	rs13238738	G	T	964.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:33,44:0.57:77
chr7	5391702	rs3801048	C	G	3616.77	.	AC=1;AF=0.500;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	0/1:172,175:0.50:347
chr7	5396715	rs35508364	T	C	24283.77	.	AC=2;AF=1.00;AN=2;DB;DP=902;set=Intersection	GT:AD:AF:DP	1/1:3,886:1.00:889
chr7	5396955	rs7805732	A	G	3186.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr7	5399044	rs12531309	C	G	4311.77	.	AC=1;AF=0.500;AN=2;DB;DP=487;set=Intersection	GT:AD:AF:DP	0/1:261,219:0.46:480
chr7	5402606	rs4357206	G	A	983.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:38,41:0.52:79
chr7	5409937	rs58182076	C	T	860.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:32,38:0.54:70
chr7	5410916	rs10215902	G	C	1485.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:70,73:0.51:143
chr7	5415874	rs11766794	T	C	8255.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.140;ClippingRankSum=0.000;DB;DP=420;ExcessHet=3.0103;FS=1.722;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.70;ReadPosRankSum=2.143;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:206,213:0.51:419
chr7	5415877	rs11769187	G	A	8252.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.127;ClippingRankSum=0.000;DB;DP=424;ExcessHet=3.0103;FS=1.722;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.51;ReadPosRankSum=2.475;SOR=0.577;set=HC	GT:AD:AF:DP	0/1:209,214:0.51:423
chr7	5427720	rs4724663	A	G	11353.77	.	AC=2;AF=1.00;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	1/1:0,403:1.00:403
chr7	5430283	rs67295626	G	A	697.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:30,28:0.48:58
chr7	5434135	rs4724668	A	G	983.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:63,48:0.43:111
chr7	5487458	rs4236392	T	C	5887.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr7	5528883	rs4724701	G	A	3023.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr7	5529758	rs28566736	G	A	14209.77	.	AC=2;AF=1.00;AN=2;DB;DP=542;set=Intersection	GT:AD:AF:DP	1/1:0,534:1.00:534
chr7	5529922	rs4077245	A	C	2175.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr7	5530827	rs3801057	G	A	12216.77	.	AC=2;AF=1.00;AN=2;DB;DP=466;set=Intersection	GT:AD:AF:DP	1/1:1,454:1.00:455
chr7	5540769	rs6953642	A	C	6911.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:2,251:0.99:253
chr7	5541657	rs4724704	G	A	5244.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr7	5643145	rs1640233	T	C	6584.77	.	AC=1;AF=0.500;AN=2;DB;DP=692;set=Intersection	GT:AD:AF:DP	0/1:355,327:0.48:682
chr7	5643479	rs1725183	C	T	3197.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:154,145:0.48:299
chr7	5645116	rs116036920	T	C	2616.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:160,126:0.44:286
chr7	5751250	rs3735289	G	A	438.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr7	5760860	rs2302907	G	A	3528.77	.	AC=1;AF=0.500;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	0/1:160,169:0.51:329
chr7	5760971	rs4720636	A	T	2331.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr7	5770330	rs35732993	T	C	1900.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.507;ClippingRankSum=0.000;DB;DP=309;ExcessHet=3.0103;FS=1.975;MLEAC=1;MLEAF=0.500;MQ=53.82;MQRankSum=-0.128;QD=6.17;ReadPosRankSum=1.384;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:198,110:0.36:308
chr7	5779375	rs10233615	T	C	6943.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:2,243:0.99:245
chr7	5780537	rs139686645	GA	G	533.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.235;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=3.662;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.35;ReadPosRankSum=-0.360;SOR=1.196;set=HC	GT:AD:AF:DP	0/1:40,44:0.52:84
chr7	5800008	rs188651853	G	A	457.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:9,21:0.70:30
chr7	5800769	rs3857756	A	G	3741.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr7	5880377	rs308097	G	A	3181.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.391;ClippingRankSum=0.000;DB;DP=322;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.66;MQRankSum=0.011;QD=10.10;ReadPosRankSum=0.458;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:158,157:0.50:315
chr7	5920394	rs201796201	T	TA	770.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.692;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=4.435;MLEAC=1;MLEAF=0.500;MQ=56.76;MQRankSum=-1.063;QD=10.28;ReadPosRankSum=1.858;SOR=1.509;set=HC	GT:AD:AF:DP	0/1:24,51:0.68:75
chr7	5920406	rs10235465	T	A	4212.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.44;QD=43.43;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr7	5920427	rs201468885	T	TG	2823.73	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:85,82:0.49:167
chr7	5923738	rs3890913	A	C	838.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.12;QD=33.55;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr7	5938326	rs117593220	C	T	38.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.515;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.97;MQRankSum=-0.000;QD=4.31;ReadPosRankSum=0.366;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:6,3:0.33:9
chr7	5941209	rs2024003	T	C	4207.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr7	5941343	rs147443489	T	C	3003.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:116,145:0.56:261
chr7	5941354	rs62453577	C	T	7052.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr7	5941411	rs112286506	G	A	4248.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr7	5941484	rs187727915	T	G	468.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:19,19:0.50:38
chr7	5942461	rs142822906	A	C	1539.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr7	5944602	rs117402320	C	T	902.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:40,39:0.49:79
chr7	5944687	rs62453583	C	A	8565.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:6,311:0.98:317
chr7	5949531	rs117167852	T	C	2514.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:86,99:0.54:185
chr7	5949599	rs62453594	T	C	5046.77	.	AC=1;AF=0.500;AN=2;DB;DP=587;set=Intersection	GT:AD:AF:DP	0/1:328,258:0.44:586
chr7	5949726	rs1138495	T	C	2459.77	.	AC=1;AF=0.500;AN=2;DB;DP=721;set=Intersection	GT:AD:AF:DP	0/1:536,154:0.22:690
chr7	5959485	rs200812052	G	A	3964.77	.	AC=1;AF=0.500;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	0/1:173,189:0.52:362
chr7	5959708	.	G	A	507.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.381;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.09;MQRankSum=-2.751;QD=15.39;ReadPosRankSum=0.437;SOR=0.985;set=HC	GT:AD:AF:DP	0/1:12,21:0.64:33
chr7	5965214	rs114399625	C	T	2915.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.191;ClippingRankSum=0.000;DB;DP=285;ExcessHet=3.0103;FS=1.413;MLEAC=1;MLEAF=0.500;MQ=47.05;MQRankSum=-5.241;QD=10.23;ReadPosRankSum=-0.433;SOR=0.597;set=HC	GT:AD:AF:DP	0/1:138,147:0.52:285
chr7	5968053	rs61032858	A	G	2767.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:95,125:0.57:220
chr7	5983012	rs150999559	A	G	1606.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.565;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=0.700;MLEAC=1;MLEAF=0.500;MQ=39.58;MQRankSum=0.450;QD=13.97;ReadPosRankSum=2.262;SOR=0.571;set=HC	GT:AD:AF:DP	0/1:52,63:0.55:115
chr7	5983063	rs148485394	C	T	1869.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.831;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=4.604;MLEAC=1;MLEAF=0.500;MQ=43.23;MQRankSum=-2.372;QD=11.40;ReadPosRankSum=-0.775;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:78,86:0.52:164
chr7	5983195	rs138475267	C	A	1891.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr7	5983553	rs80120223	A	C	614.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.51;QD=30.74;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr7	6026775	rs2228006	T	C	4149.77	.	AC=1;AF=0.500;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	0/1:204,188:0.48:392
chr7	6031804	.	G	GT	274.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.486;ClippingRankSum=0.000;DP=250;ExcessHet=3.0103;FS=5.338;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=3.077;QD=1.61;ReadPosRankSum=0.981;SOR=0.323;set=HC	GT:AD:AF:DP	0/1:131,40:0.23:171
chr7	6036847	.	G	GA	141.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.020;ClippingRankSum=0.000;DP=65;ExcessHet=3.0103;FS=1.565;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.36;ReadPosRankSum=-0.437;SOR=0.395;set=HC	GT:AD:AF:DP	0/1:42,18:0.30:60
chr7	6037057	rs60794673	GA	G	380.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.236;ClippingRankSum=0.000;DB;DP=253;ExcessHet=3.0103;FS=2.309;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=0.000;QD=1.92;ReadPosRankSum=-2.579;SOR=0.928;set=HC	GT:AD:AF:DP	0/1:136,62:0.31:198
chr7	6057777	.	C	CT	223.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.223;ClippingRankSum=0.000;DP=196;ExcessHet=3.0103;FS=2.180;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.252;QD=2.11;ReadPosRankSum=-0.282;SOR=0.450;set=HC	GT:AD:AF:DP	0/1:75,31:0.29:106
chr7	6064470	.	C	CT	233.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.304;ClippingRankSum=0.000;DP=184;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=0.000;QD=2.03;ReadPosRankSum=0.506;SOR=0.207;set=HC	GT:AD:AF:DP	0/1:82,33:0.29:115
chr7	6080853	rs34743814	GA	G	85.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.113;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.927;QD=0.77;ReadPosRankSum=-0.837;SOR=0.649;set=HC	GT:AD:AF:DP	0/1:87,25:0.22:112
chr7	6097877	.	C	CA	119.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.276;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.42;ReadPosRankSum=-1.112;SOR=0.435;set=HC	GT:AD:AF:DP	0/1:22,13:0.37:35
chr7	6151400	.	A	AT	72.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.730;ClippingRankSum=-0.000;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.30;MQRankSum=-0.000;QD=3.83;ReadPosRankSum=0.478;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:10,9:0.47:19
chr7	6175633	rs11322306	CT	C	252.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.220;ClippingRankSum=0.000;DB;DP=245;ExcessHet=3.0103;FS=2.955;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=2.381;QD=1.91;ReadPosRankSum=0.456;SOR=0.316;set=HC	GT:AD:AF:DP	0/1:86,46:0.35:132
chr7	6185968	.	TA	T	64.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.681;ClippingRankSum=0.000;DP=105;ExcessHet=3.0103;FS=5.054;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.780;QD=0.86;ReadPosRankSum=-1.900;SOR=0.220;set=HC	GT:AD:AF:DP	0/1:55,20:0.27:75
chr7	6204999	rs2301910	A	C	10936.77	.	AC=1;AF=0.500;AN=2;DB;DP=721;set=Intersection	GT:AD:AF:DP	0/1:227,488:0.68:715
chr7	6230059	.	GT	G	196.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.847;ClippingRankSum=0.000;DP=77;ExcessHet=3.0103;FS=2.466;MLEAC=1;MLEAF=0.500;MQ=60.42;MQRankSum=2.618;QD=2.77;ReadPosRankSum=-1.269;SOR=1.135;set=HC	GT:AD:AF:DP	0/1:39,32:0.45:71
chr7	6370144	rs1043965	G	A	14795.77	.	AC=1;AF=0.500;AN=2;DB;DP=1042;set=Intersection	GT:AD:AF:DP	0/1:375,653:0.64:1028
chr7	6370194	rs6952125	C	T	33544.77	.	AC=2;AF=1.00;AN=2;DB;DP=1255;set=Intersection	GT:AD:AF:DP	1/1:2,1241:1.00:1243
chr7	6370305	rs3750039	C	G	26919.77	.	AC=2;AF=1.00;AN=2;DB;DP=993;set=Intersection	GT:AD:AF:DP	1/1:5,972:0.99:977
chr7	6370406	rs3750040	C	T	16320.77	.	AC=2;AF=1.00;AN=2;DB;DP=592;set=Intersection	GT:AD:AF:DP	1/1:0,579:1.00:579
chr7	6370575	rs3750041	C	T	12532.77	.	AC=1;AF=0.500;AN=2;DB;DP=796;set=Intersection	GT:AD:AF:DP	0/1:235,541:0.70:776
chr7	6431724	.	A	G	8595.77	.	AC=1;AF=0.500;AN=2;DP=1464;set=Intersection	GT:AD:AF:DP	0/1:976,478:0.33:1454
chr7	6452799	rs146247471	G	A	1015.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:15,40:0.73:55
chr7	6485740	.	C	CA	103.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.338;ClippingRankSum=0.000;DP=334;ExcessHet=3.0103;FS=4.671;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=3.070;QD=0.38;ReadPosRankSum=1.637;SOR=0.367;set=HC	GT:AD:AF:DP	0/1:229,46:0.17:275
chr7	6487293	rs3750037	G	C	8838.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chr7	6505901	rs2230263	T	C	8740.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chr7	6513779	rs17777087	T	C	848.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:116,48:0.29:164
chr7	6522129	rs55841143	G	A	4966.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.235;ClippingRankSum=0.000;DB;DP=929;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.39;ReadPosRankSum=-0.706;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:635,287:0.31:922
chr7	6537566	rs5882098	CA	C	4976.73	.	AC=1;AF=0.500;AN=2;DB;DP=597;set=Intersection	GT:AD:AF:DP	0/1:416,176:0.30:592
chr7	6537821	rs6463568	G	C	12666.77	.	AC=2;AF=1.00;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	1/1:0,445:1.00:445
chr7	6537913	rs79970150	A	G	696.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:59,32:0.35:91
chr7	6541347	rs7791451	C	T	4485.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr7	6544361	rs113686722	T	A	1328.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:184,79:0.30:263
chr7	6544630	rs78696194	G	A	2072.77	.	AC=1;AF=0.500;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	0/1:231,118:0.34:349
chr7	6544691	rs2881698	C	T	2334.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:37,95:0.72:132
chr7	6545335	rs9640023	G	A	2006.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:27,79:0.75:106
chr7	6545619	rs11980487	T	C	775.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:58,38:0.40:96
chr7	6549867	rs74487555	G	A	593.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:94,33:0.26:127
chr7	6550403	rs34411495	A	G	3575.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.132;ClippingRankSum=0.000;DB;DP=825;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.44;ReadPosRankSum=-0.316;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:576,230:0.29:806
chr7	6550494	rs12702520	G	A	28386.77	.	AC=2;AF=1.00;AN=2;DB;DP=1058;set=Intersection	GT:AD:AF:DP	1/1:0,1054:1.00:1054
chr7	6566322	rs2881723	T	G	9461.77	.	AC=2;AF=1.00;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	1/1:0,360:1.00:360
chr7	6566442	rs12702526	C	T	4808.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:118,214:0.64:332
chr7	6570618	rs11772639	G	C	2472.77	.	AC=1;AF=0.500;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	0/1:262,143:0.35:405
chr7	6590670	rs9690195	C	T	151.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:23,11:0.32:34
chr7	6590693	rs6463571	G	A	1339.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr7	6591041	rs4724818	C	G	6005.77	.	AC=1;AF=0.500;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	0/1:123,249:0.67:372
chr7	6621277	rs11559146	G	A	1999.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:169,100:0.37:269
chr7	6628242	rs3088114	T	C	1889.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.285;ClippingRankSum=0.000;DB;DP=463;ExcessHet=3.0103;FS=2.925;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.18;ReadPosRankSum=0.160;SOR=0.939;set=HC	GT:AD:AF:DP	0/1:336,116:0.26:452
chr7	6639418	rs200697766	C	T	3509.77	.	AC=1;AF=0.500;AN=2;DB;DP=605;set=Intersection	GT:AD:AF:DP	0/1:408,188:0.32:596
chr7	6639953	rs34300529	G	A	4019.77	.	AC=1;AF=0.500;AN=2;DB;DP=732;set=Intersection	GT:AD:AF:DP	0/1:472,244:0.34:716
chr7	6641635	rs13246348	C	T	7676.77	.	AC=1;AF=0.500;AN=2;DB;DP=474;set=Intersection	GT:AD:AF:DP	0/1:139,331:0.70:470
chr7	6647180	.	C	T	1648.77	.	AC=1;AF=0.500;AN=2;DP=328;set=Intersection	GT:AD:AF:DP	0/1:230,95:0.29:325
chr7	6647738	rs4416743	T	C	3744.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr7	6655932	rs34060186	C	G	1434.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.725;ClippingRankSum=0.000;DB;DP=334;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.32;ReadPosRankSum=0.120;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:240,92:0.28:332
chr7	6656830	rs2243563	G	A	2324.77	.	AC=1;AF=0.500;AN=2;DB;DP=493;set=Intersection	GT:AD:AF:DP	0/1:352,139:0.28:491
chr7	6656897	rs1806552	A	G	1905.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.333;ClippingRankSum=0.000;DB;DP=474;ExcessHet=3.0103;FS=1.252;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.04;ReadPosRankSum=0.303;SOR=0.816;set=HC	GT:AD:AF:DP	0/1:344,128:0.27:472
chr7	6713985	rs2243620	A	G	6810.77	.	AC=1;AF=0.500;AN=2;DB;DP=701;set=Intersection	GT:AD:AF:DP	0/1:350,334:0.49:684
chr7	6714423	rs35568522	CAA	C	107.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.303;ClippingRankSum=-0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.99;ReadPosRankSum=1.754;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:11,7:0.39:18
chr7	6714788	rs71844696	CCTT	C	8874.73	.	AC=1;AF=0.500;AN=2;DB;DP=473;set=Intersection	GT:AD:AF:DP	0/1:233,231:0.50:464
chr7	6746554	.	G	C	1961.77	.	AC=1;AF=0.500;AN=2;DP=282;set=Intersection	GT:AD:AF:DP	0/1:163,110:0.40:273
chr7	6797663	rs370680885	T	C	89.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.119;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=23.170;MLEAC=1;MLEAF=0.500;MQ=48.97;MQRankSum=-4.249;QD=0.63;ReadPosRankSum=-1.304;SOR=0.058;set=HC	GT:AD:AF:DP	0/1:120,22:0.15:142
chr7	6803602	rs200943820	C	T	153.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.590;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=2.822;MLEAC=1;MLEAF=0.500;MQ=46.23;MQRankSum=-0.066;QD=2.56;ReadPosRankSum=-1.925;SOR=1.142;set=HC	GT:AD:AF:DP	0/1:47,13:0.22:60
chr7	6805524	.	T	C	959	.	AC=1;AF=0.500;AN=2;BRF=0.51;FR=0.5000;HP=2;HapScore=1;MGOF=2;MMLQ=24;MQ=44.91;NF=2;NR=69;PP=959;QD=13.9967776415;SC=AAAAGTTGCATGGAACATTTT;SbPval=1.0;Source=Platypus;TC=247;TCF=41;TCR=206;TR=71;WE=6805532;WS=6805514;set=Platypus	GT:AD:AF:DP	1/0:176,71:0.29:247
chr7	6821050	rs140658665	T	C	1336.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.685;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=39.98;MQRankSum=-1.472;QD=11.05;ReadPosRankSum=-1.272;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:66,55:0.45:121
chr7	6836486	rs369350363	T	C	961.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.074;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=6.161;MLEAC=1;MLEAF=0.500;MQ=46.98;MQRankSum=-5.143;QD=10.93;ReadPosRankSum=-1.884;SOR=0.192;set=HC	GT:AD:AF:DP	0/1:47,41:0.47:88
chr7	6845516	rs144852517	C	T	488.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.147;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.53;MQRankSum=-8.269;QD=2.49;ReadPosRankSum=1.580;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:153,43:0.22:196
chr7	6854272	rs11769113	A	T	6061.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr7	7136061	rs35367486	G	GA	8012.73	.	AC=2;AF=1.00;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	1/1:5,365:0.99:370
chr7	7136077	rs17163287	C	A	16524.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	1/1:0,380:1.00:380
chr7	7277807	rs3807862	G	A	364.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:19,17:0.47:36
chr7	7398457	rs2348042	T	G	4125.77	.	AC=1;AF=0.500;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	0/1:152,181:0.54:333
chr7	7400239	rs7786515	A	G	322.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:8,14:0.64:22
chr7	7415217	rs1294651	C	T	386.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:17,16:0.48:33
chr7	7421019	rs1294626	C	A	1032.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr7	7421310	rs1294627	A	G	1697.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:100,83:0.45:183
chr7	7477250	rs5882126	T	TA	258.73	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:14,12:0.46:26
chr7	7480376	rs33937466	C	CA	5755.73	.	AC=1;AF=0.500;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	0/1:199,220:0.53:419
chr7	7483083	rs10234554	C	T	2046.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:96,93:0.49:189
chr7	7491873	rs4720735	AG	CT	5619.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr7	7492995	rs17167926	C	T	1440.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.708;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.29;ReadPosRankSum=1.155;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:70,70:0.50:140
chr7	7495735	rs55745506	T	C	2173.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:140,107:0.43:247
chr7	7514235	rs6952195	C	G	3980.77	.	AC=1;AF=0.500;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	0/1:262,194:0.43:456
chr7	7514442	rs147415418	A	G	611.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:33,26:0.44:59
chr7	7516683	rs17168103	T	C	2774.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:93,131:0.58:224
chr7	7528880	rs12671912	G	A	671.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:15,29:0.66:44
chr7	7528951	rs6463696	C	T	3884.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr7	7545571	rs17168333	T	C	854.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:46,39:0.46:85
chr7	7550632	rs28490326	T	G	4790.77	.	AC=1;AF=0.500;AN=2;DB;DP=507;set=Intersection	GT:AD:AF:DP	0/1:272,233:0.46:505
chr7	7557297	rs1016028	T	C	6938.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr7	7557615	.	AG	A	996.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.639;ClippingRankSum=0.000;DP=65;ExcessHet=3.0103;FS=1.314;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.12;ReadPosRankSum=0.406;SOR=1.075;set=HC	GT:AD:AF:DP	0/1:26,29:0.53:55
chr7	7557618	.	C	T	1004.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.233;ClippingRankSum=0.000;DP=56;ExcessHet=3.0103;FS=2.861;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.96;ReadPosRankSum=0.510;SOR=1.211;set=HC	GT:AD:AF:DP	0/1:24,29:0.55:53
chr7	7559541	rs17151557	A	C	304.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:15,12:0.44:27
chr7	7570959	rs17168516	T	G	2248.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:97,96:0.50:193
chr7	7571094	rs7804532	G	C	13798.77	.	AC=2;AF=1.00;AN=2;DB;DP=509;set=Intersection	GT:AD:AF:DP	1/1:0,503:1.00:503
chr7	7572367	rs60871237	AT	A	123.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.623;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=2.106;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.615;QD=1.33;ReadPosRankSum=-1.876;SOR=0.434;set=HC	GT:AD:AF:DP	0/1:70,23:0.25:93
chr7	7622696	rs4720741	C	T	1594.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr7	7627975	rs17523883	C	G	498.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:16,19:0.54:35
chr7	7627994	rs6463702	T	C	1316.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr7	7628275	rs7801367	C	T	1610.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr7	7645535	rs10276434	A	G	4418.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr7	7645806	rs2286209	A	G	2692.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:109,114:0.51:223
chr7	7646651	rs7806046	G	T	8297.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr7	7646687	rs4222	A	G	3429.77	.	AC=1;AF=0.500;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	0/1:174,176:0.50:350
chr7	7678543	rs148234474	TGA	T	278.73	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:29,10:0.26:39
chr7	7712941	rs10527750	TAGCAGCAGC	T,TAGCAGCAGCAGCAGC	4368.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=322;set=Intersection	GT:AF:DP	1/2:0.54,0.36:216
chr7	7841524	rs6463722	G	T	1180.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:47,56:0.54:103
chr7	7841561	rs2348558	C	T	1798.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr7	8043504	rs38013	A	G	7118.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr7	8110475	rs10253861	G	A	3228.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr7	8110780	rs10486207	A	G	1910.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:62,75:0.55:137
chr7	8125964	rs929509	C	T	22448.77	.	AC=2;AF=1.00;AN=2;DB;DP=833;set=Intersection	GT:AD:AF:DP	1/1:1,818:1.00:819
chr7	8126194	rs12847	A	G	1153.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:51,51:0.50:102
chr7	8132252	rs4725069	T	C	6253.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr7	8181286	rs6972885	T	C	218.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:13,9:0.41:22
chr7	8181555	rs80350640	C	CCA	34365.73	.	AC=2;AF=1.00;AN=2;DB;DP=1071;set=Intersection	GT:AD:AF:DP	1/1:56,953:0.94:1009
chr7	8181565	rs6952542	G	A	9116.77	.	AC=1;AF=0.500;AN=2;DB;DP=1115;set=Intersection	GT:AD:AF:DP	0/1:580,459:0.44:1039
chr7	8196529	rs10282493	A	T	6827.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.559;ClippingRankSum=0.000;DB;DP=664;ExcessHet=3.0103;FS=1.722;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=-3.762;QD=10.33;ReadPosRankSum=0.934;SOR=0.780;set=HC	GT:AD:AF:DP	0/1:335,326:0.49:661
chr7	8196559	rs71014766	TAAAAAAAAAAAAAAAAAAA	T	3342.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.045;ClippingRankSum=0.000;DB;DP=514;ExcessHet=3.0103;FS=0.389;MLEAC=1;MLEAF=0.500;MQ=60.38;MQRankSum=-0.997;QD=8.27;ReadPosRankSum=0.023;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:231,173:0.43:404
chr7	8196567	rs200840693	AAAAAAAAAAAAAAAAAAG	A	1335.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.231;ClippingRankSum=0.000;DB;DP=480;ExcessHet=3.0103;FS=2.298;MLEAC=1;MLEAF=0.500;MQ=60.38;MQRankSum=-2.936;QD=3.47;ReadPosRankSum=1.686;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:259,126:0.33:385
chr7	8267235	rs34695487	C	CT	52.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.341;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.86;ReadPosRankSum=0.218;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:46,15:0.25:61
chr7	8790549	rs10225984	C	T	1094.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:36,41:0.53:77
chr7	10973235	rs189868469	A	G	58.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:15,4:0.21:19
chr7	10973362	rs7789764	C	T	2181.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr7	10977630	rs17163788	G	A	2365.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.507;ClippingRankSum=0.000;DB;DP=276;ExcessHet=3.0103;FS=0.447;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.86;ReadPosRankSum=0.947;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:143,124:0.46:267
chr7	11022230	rs218966	A	G	3557.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.46;SOR=1.686;set=HC	GT:AD:AF:DP	1/1:0,125:1.00:125
chr7	11022564	rs218965	G	A	8431.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr7	11030274	rs145285105	GT	G	485.73	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:40,35:0.47:75
chr7	11076514	rs41272942	T	G	121.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:14,8:0.36:22
chr7	11078498	rs117308428	A	G	7206.77	.	AC=1;AF=0.500;AN=2;DB;DP=697;set=Intersection	GT:AD:AF:DP	0/1:348,345:0.50:693
chr7	11078528	rs76391370	T	C	6104.77	.	AC=1;AF=0.500;AN=2;DB;DP=569;set=Intersection	GT:AD:AF:DP	0/1:281,283:0.50:564
chr7	11082439	rs61753125	T	C	2625.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:81,119:0.59:200
chr7	11151137	rs117182717	G	A	3478.77	.	AC=1;AF=0.500;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	0/1:187,174:0.48:361
chr7	11209141	rs79953724	A	G	313.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:33,19:0.37:52
chr7	11416378	rs2189351	A	G	999.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:23,42:0.65:65
chr7	11418670	rs2189352	C	A	425.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:32,19:0.37:51
chr7	11418931	rs12670599	T	C	3578.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:154,167:0.52:321
chr7	11419104	rs2285757	G	T	758.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:29,31:0.52:60
chr7	11419378	rs2107162	T	C	2209.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:100,101:0.50:201
chr7	11441358	rs10950347	A	T	414.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:21,20:0.49:41
chr7	11441700	rs1859225	G	T	610.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:11,23:0.68:34
chr7	11446902	rs6956916	T	G	2419.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:111,108:0.49:219
chr7	11447159	rs6975407	G	C	866.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:28,33:0.54:61
chr7	11452204	rs2301743	C	G	792.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:35,29:0.45:64
chr7	11464297	rs1859226	T	C	3201.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:153,153:0.50:306
chr7	11485527	rs10262052	T	C	1982.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr7	11487100	rs2074434	C	G	1245.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:73,62:0.46:135
chr7	11509561	rs2285744	G	C	2261.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:152,116:0.43:268
chr7	11521542	rs3735502	T	C	4091.77	.	AC=1;AF=0.500;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	0/1:219,206:0.48:425
chr7	11581121	rs47	T	C	5775.77	.	AC=1;AF=0.500;AN=2;DB;DP=493;set=Intersection	GT:AD:AF:DP	0/1:231,257:0.53:488
chr7	11630298	rs2074602	C	A	3207.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:113,145:0.56:258
chr7	11633193	rs2354954	G	A	1112.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:41,49:0.54:90
chr7	11675782	rs200675098	T	C	6035.77	.	AC=1;AF=0.500;AN=2;DB;DP=615;set=Intersection	GT:AD:AF:DP	0/1:323,287:0.47:610
chr7	11676694	rs2074597	C	A	1238.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:51,53:0.51:104
chr7	12255434	rs6460901	C	T	1452.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:80,70:0.47:150
chr7	12255511	rs6460902	G	A	575.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:23,25:0.52:48
chr7	12257938	rs6415232	A	G	172.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:11,8:0.42:19
chr7	12263799	rs11509137	TG	CA	7350.77	.	AC=1;AF=0.500;AN=2;DB;DP=388;JOINED;set=Intersection	GT:AD:AF:DP	0/1:188,189:0.50:377
chr7	12269260	rs3839691	A	ATGTT	857.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:20,23:0.53:43
chr7	12269417	rs3173615	C	G	1642.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:65,80:0.55:145
chr7	12270583	rs3217132	CTTA	C	109.73	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:7,4:0.36:11
chr7	12270625	rs2302635	G	A	146.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.786;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=4.738;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.34;ReadPosRankSum=0.800;SOR=0.122;set=HC	GT:AD:AF:DP	0/1:11,9:0.45:20
chr7	12270770	rs2302634	T	A	1161.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:79,60:0.43:139
chr7	12270815	rs2302633	C	T	1171.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:66,60:0.48:126
chr7	12270967	rs2302632	A	G	192.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:13,9:0.41:22
chr7	12271452	rs3800842	A	G	3663.77	.	AC=1;AF=0.500;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	0/1:202,185:0.48:387
chr7	12370657	rs2253353	A	G	252.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:7,10:0.59:17
chr7	12370702	rs3217131	AT	A	346.73	.	AC=1;AF=0.500;AN=2;DB;DP=40;MQ=60.27;set=Intersection	GT:AD:AF:DP	0/1:19,20:0.51:39
chr7	12370794	rs1059002	T	C	1258.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:60,60:0.50:120
chr7	12370952	rs6954265	C	T	967.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:38,45:0.54:83
chr7	12371001	rs6954555	G	A	350.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:21,17:0.45:38
chr7	12371019	rs3815534	A	T	138.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:19,8:0.30:27
chr7	12372999	rs6460928	T	G	1009.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:25,37:0.60:62
chr7	12373082	rs6460929	C	T	2859.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:108,124:0.53:232
chr7	12373353	rs6460930	TG	CA	2269.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;JOINED;set=Intersection	GT:AD:AF:DP	0/1:55,60:0.52:115
chr7	12375667	rs35608044	G	GA	1917.73	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:66,59:0.47:125
chr7	12376811	rs2192828	A	C	7681.77	.	AC=1;AF=0.500;AN=2;DB;DP=725;set=Intersection	GT:AD:AF:DP	0/1:354,359:0.50:713
chr7	12382637	rs1440030	C	T	1622.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;MQ=59.97;set=Intersection	GT:AD:AF:DP	0/1:83,76:0.48:159
chr7	12383967	rs1440032	T	A	2701.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:183,136:0.43:319
chr7	12391319	rs6967385	G	T	1424.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:27,62:0.70:89
chr7	12393966	rs6944618	A	G	21246.77	.	AC=2;AF=1.00;AN=2;DB;DP=474;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.21;SOR=1.342;set=HC	GT:AD:AF:DP	1/1:0,470:1.00:470
chr7	12393974	rs6944626	A	C	22063.77	.	AC=2;AF=1.00;AN=2;DB;DP=517;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.01;SOR=1.283;set=HC	GT:AD:AF:DP	1/1:0,513:1.00:513
chr7	12394053	rs6945167	G	T	21912.77	.	AC=2;AF=1.00;AN=2;DB;DP=823;set=Intersection	GT:AD:AF:DP	1/1:0,816:1.00:816
chr7	12394202	rs10267441	A	T	1416.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:69,56:0.45:125
chr7	12395813	rs2119141	T	C	4702.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr7	12396040	rs4719307	A	G	193.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:9,10:0.53:19
chr7	12400837	rs2053380	G	A	1080.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:46,50:0.52:96
chr7	12406989	rs6460939	C	G	1666.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:89,81:0.48:170
chr7	12410112	rs963323	G	A	6399.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr7	12417407	rs7793993	C	T	936.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:35,42:0.55:77
chr7	12418938	rs10499421	G	C	1520.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:65,64:0.50:129
chr7	12418964	rs10270931	T	C	2204.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:109,103:0.49:212
chr7	12419039	rs10570724	TCA	T	7266.73	.	AC=1;AF=0.500;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	0/1:207,189:0.48:396
chr7	12419108	rs6967241	A	T	3774.77	.	AC=1;AF=0.500;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	0/1:207,183:0.47:390
chr7	12420092	rs1025787	G	C	1467.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:64,62:0.49:126
chr7	12420447	rs6959370	T	G	1113.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:67,51:0.43:118
chr7	12420517	rs6460941	T	A	218.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:22,12:0.35:34
chr7	12428608	rs6954047	C	A	2455.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:153,117:0.43:270
chr7	12428803	rs848016	G	A	4546.77	.	AC=1;AF=0.500;AN=2;DB;DP=539;set=Intersection	GT:AD:AF:DP	0/1:298,230:0.44:528
chr7	12429112	rs848015	T	C	157.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr7	12433195	rs12669558	T	C	284.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:17,13:0.43:30
chr7	12609988	rs2240571	G	C	2767.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:4,97:0.96:101
chr7	12610594	rs2240572	A	G	5206.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr7	12611252	rs6460967	T	C	4611.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:1,165:0.99:166
chr7	12617224	rs55829483	C	G	1685.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:1,62:0.98:63
chr7	12620804	rs17283717	C	T	1779.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:56,82:0.59:138
chr7	12636026	rs758111	T	C	8521.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr7	12644334	rs849778	G	T	4051.77	.	AC=1;AF=0.500;AN=2;DB;DP=416;MQ=60.05;set=Intersection	GT:AD:AF:DP	0/1:219,194:0.47:413
chr7	12644348	rs143007956	GGTGT	G,GGTGTGT	11373.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.487;ClippingRankSum=0.000;DB;DP=376;ExcessHet=3.0103;FS=8.232;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.14;MQRankSum=0.372;QD=35.00;ReadPosRankSum=-0.404;SOR=0.122;set=HC	GT:AD:AF:DP	1/2:8,175,142:0.54,0.44:325
chr7	12665517	rs2529782	T	C	1365.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.343;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=0.626;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.83;ReadPosRankSum=0.088;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:72,67:0.48:139
chr7	12666540	rs849757	C	T	698.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:26,30:0.54:56
chr7	12668859	rs377629584	C	T	4228.77	.	AC=1;AF=0.500;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	0/1:185,196:0.51:381
chr7	12684340	rs2691810	C	T	2073.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:85,96:0.53:181
chr7	12689322	rs13238508	C	T	292.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:18,13:0.42:31
chr7	12727826	rs2280633	G	C	3641.77	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:153,169:0.52:322
chr7	13946316	rs17167633	C	T	576.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:19,23:0.55:42
chr7	13947289	rs10950497	G	A	709.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:32,34:0.52:66
chr7	13947605	rs55959792	G	GT	156.73	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chr7	13949853	.	CT	C	52.86	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.465;ClippingRankSum=-0.000;DP=15;ExcessHet=3.0103;FS=3.680;MLEAC=2;MLEAF=1.000;MQ=58.59;MQRankSum=-0.000;QD=7.55;ReadPosRankSum=1.068;SOR=1.108;set=HC	GT:AD:AF:DP	1/1:1,6:0.86:7
chr7	13978645	rs3801098	C	T	1551.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.481;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.07;ReadPosRankSum=-0.547;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:61,42:0.41:103
chr7	13978648	rs3801099	T	A	1596.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.932;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.92;ReadPosRankSum=-0.514;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:63,44:0.41:107
chr7	13978809	rs9639168	T	C	4602.77	.	AC=1;AF=0.500;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	0/1:204,229:0.53:433
chr7	14016939	rs2074670	T	C	1208.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:52,58:0.53:110
chr7	14017007	rs2066977	CC	TG	2437.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.129;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=2.065;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.091;QD=16.58;ReadPosRankSum=-1.352;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:79,68:0.46:147
chr7	14017126	rs5882424	T	TA	509.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.937;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=1.586;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=0.669;QD=13.78;ReadPosRankSum=-0.086;SOR=0.437;set=HC	GT:AD:AF:DP	0/1:10,27:0.73:37
chr7	14025640	rs3801110	G	A	779.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:46,32:0.41:78
chr7	14025690	rs149087275	T	C	2668.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:86,109:0.56:195
chr7	14025727	rs3823704	C	T	3317.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:184,155:0.46:339
chr7	14025766	rs10215655	T	A	5134.77	.	AC=1;AF=0.500;AN=2;DB;DP=542;set=Intersection	GT:AD:AF:DP	0/1:286,246:0.46:532
chr7	14026357	rs3213661	A	G	2368.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr7	14027812	.	G	C	6383.77	.	AC=1;AF=0.500;AN=2;DP=553;set=Intersection	GT:AD:AF:DP	0/1:252,288:0.53:540
chr7	14027867	rs59844225	G	GCA	1875.73	.	AC=1;AF=0.500;AN=2;DB;DP=207;MQ=60.31;set=Intersection	GT:AD:AF:DP	0/1:94,68:0.42:162
chr7	14028189	rs11364123	CA	C	290.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.686;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=7.095;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.70;ReadPosRankSum=0.132;SOR=2.380;set=HC	GT:AD:AF:DP	0/1:27,24:0.47:51
chr7	14028220	rs72368501	GA	G,GAA	634.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=2.121;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=8.24;ReadPosRankSum=2.764;SOR=0.580;set=HC	GT:AD:AF:DP	1/2:14,39,24:0.51,0.31:77
chr7	14028245	rs11460974	G	GA	3836.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.058;ClippingRankSum=0.000;DB;DP=238;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=18.36;ReadPosRankSum=-1.609;SOR=0.643;set=HC	GT:AD:AF:DP	1/1:16,193:0.92:209
chr7	14028707	rs140879246	TA	T	4933.73	.	AC=1;AF=0.500;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	0/1:186,179:0.49:365
chr7	14028794	rs10622991	T	TAA	1772.73	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:72,82:0.53:154
chr7	14028860	rs11328804	CA	C	618.73	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:35,32:0.48:67
chr7	14216442	rs17167945	A	G	3934.77	.	AC=1;AF=0.500;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	0/1:179,196:0.52:375
chr7	14217673	rs6966154	G	A	1594.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:127,87:0.41:214
chr7	14384832	rs2271267	T	C	295.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:16,13:0.45:29
chr7	14517650	rs3839747	T	TAC	319.73	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:19,13:0.41:32
chr7	14517977	rs3823843	G	A	236.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:21,11:0.34:32
chr7	14622510	rs17595234	G	A	664.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:53,30:0.36:83
chr7	14622870	rs3795245	A	T	1267.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:53,51:0.49:104
chr7	14646986	rs17168299	C	G	454.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:31,24:0.44:55
chr7	14653054	rs1525088	T	C	1060.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:45,53:0.54:98
chr7	14712793	rs34768816	AG	A	1556.73	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:59,54:0.48:113
chr7	14737622	rs145306944	AAAAG	A	865.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.486;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.94;MQRankSum=0.780;QD=28.86;ReadPosRankSum=0.208;SOR=1.382;set=HC	GT:AD:AF:DP	0/1:2,28:0.93:30
chr7	14758273	rs1997040	C	T	6205.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr7	14775821	rs139628753	TG	T	1083.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.513;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=64.31;MQRankSum=8.310;QD=11.53;ReadPosRankSum=1.087;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:45,49:0.52:94
chr7	14775823	.	GA	CA	1262	.	AC=1;AF=0.500;AN=2;BRF=0.4;FR=0.5000,0.5000;HP=10;HapScore=4;MGOF=5;MMLQ=28;MQ=64.39;NF=8,1;NR=30,30;PP=1239,1262;QD=33.520295067;SC=CTATTGTCTGGAAAAAAAAAA;SbPval=0.6;Source=Platypus;TC=81;TCF=18;TCR=63;TR=38,31;WE=14775831;WS=14775813;set=Platypus	GT:AD:AF:DP	0/1:43,38:0.47:81
chr7	14775823	.	GA	G	1262	.	AC=1;AF=0.500;AN=2;BRF=0.4;FR=0.5000,0.5000;HP=10;HapScore=4;MGOF=5;MMLQ=28;MQ=64.39;NF=8,1;NR=30,30;PP=1239,1262;QD=33.520295067;SC=CTATTGTCTGGAAAAAAAAAA;SbPval=0.6;Source=Platypus;TC=81;TCF=18;TCR=63;TR=38,31;WE=14775831;WS=14775813;set=Platypus	GT:AD:AF:DP	0/1:35,31:0.47:66
chr7	14775824	rs80024169	A	C	1092.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.250;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=64.76;MQRankSum=8.077;QD=12.14;ReadPosRankSum=0.661;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:41,49:0.54:90
chr7	14789844	rs1723239	A	C	850.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:50,36:0.42:86
chr7	14793399	rs1723225	T	C	84.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr7	14793478	rs1723224	T	C	426.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:12,20:0.62:32
chr7	14793724	rs4632953	G	C	926.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:46,46:0.50:92
chr7	14797180	rs147706722	T	TAC	615.73	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:18,22:0.55:40
chr7	14881079	rs74902981	CAA	C	824.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:1,29:0.97:30
chr7	15346196	rs5882493	T	TA	1602.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.205;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=7.190;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.000;QD=12.72;ReadPosRankSum=-0.033;SOR=0.213;set=HC	GT:AD:AF:DP	0/1:30,96:0.76:126
chr7	15426956	rs4541808	G	A	1722.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:69,82:0.54:151
chr7	15430259	rs6942879	A	C	719.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:47,34:0.42:81
chr7	15430599	rs35830831	GT	G	177.73	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:11,11:0.50:22
chr7	15458033	rs4469360	C	G	530.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr7	15470543	.	G	GTTTTTTTTT	104.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.330;ClippingRankSum=0.000;DP=37;ExcessHet=3.0103;FS=12.923;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.99;ReadPosRankSum=-1.396;SOR=1.052;set=HC	GT:AD:AF:DP	0/1:29,6:0.17:35
chr7	15666230	rs3779406	C	T	654.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:38,28:0.42:66
chr7	15725797	rs113582077	ATGG	A	7281.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.843;ClippingRankSum=0.000;DB;DP=422;ExcessHet=3.0103;FS=19.035;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=2.140;QD=22.00;ReadPosRankSum=1.647;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:143,188:0.57:331
chr7	15726066	rs1050290	G	A	9384.77	.	AC=1;AF=0.500;AN=2;DB;DP=895;set=Intersection	GT:AD:AF:DP	0/1:438,452:0.51:890
chr7	15726117	rs33970897	A	ATT	4990.73	.	AC=1;AF=0.500;AN=2;DB;DP=570;set=Intersection	GT:AD:AF:DP	0/1:241,237:0.50:478
chr7	15726129	rs11975534	A	C	5205.77	.	AC=1;AF=0.500;AN=2;DB;DP=486;set=Intersection	GT:AD:AF:DP	0/1:244,239:0.49:483
chr7	16129153	rs28379235	C	T	1540.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr7	16129172	rs9691136	A	G	1919.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr7	16131260	rs1528137	C	T	3518.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr7	16255602	rs4389828	A	T	402.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr7	16298434	rs1295153	T	C	1323.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.65;SOR=2.910;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr7	16298438	rs7799150	T	G	1457.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.65;SOR=2.964;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr7	16298766	rs5882563	A	AT	520.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;MQ=60.72;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr7	16348059	rs62441885	T	C	7760.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr7	16445673	rs6461252	A	T	2113.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:182,110:0.38:292
chr7	16460893	rs7782939	T	G	1144.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:46,44:0.49:90
chr7	16503932	rs67149353	C	G	10788.77	.	AC=2;AF=1.00;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	1/1:0,396:1.00:396
chr7	16505054	rs111391406	GA	G	1037.73	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:11,62:0.85:73
chr7	16505341	rs6945425	T	C	3762.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr7	16566391	rs6461263	T	G	2294.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr7	16571973	rs1404173	A	G	473.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.730;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=2.645;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.15;ReadPosRankSum=-0.560;SOR=1.341;set=HC	GT:AD:AF:DP	0/1:26,13:0.33:39
chr7	16571976	rs1404172	C	G	591.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.378;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=8.465;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.84;ReadPosRankSum=-1.696;SOR=3.033;set=HC	GT:AD:AF:DP	0/1:31,19:0.38:50
chr7	16572008	rs2301965	C	T	786.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:48,34:0.41:82
chr7	16572051	rs1404171	C	T	1642.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:80,81:0.50:161
chr7	16577376	rs6961390	G	A	1152.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr7	16598655	rs6979816	G	A	1184.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:62,59:0.49:121
chr7	16605861	rs11463350	A	AT	887.73	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:48,47:0.49:95
chr7	16607177	rs11379958	T	TA	470.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.063;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=26.004;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.109;QD=3.54;ReadPosRankSum=-0.074;SOR=2.384;set=HC	GT:AD:AF:DP	0/1:85,48:0.36:133
chr7	16640358	rs543387	T	C	678.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:41,30:0.42:71
chr7	16650427	rs572570	C	G	7975.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr7	16655632	rs9638734	C	T	362.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:14,15:0.52:29
chr7	16664511	rs34435348	A	AC	1906.73	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:68,62:0.48:130
chr7	16666741	rs11532682	T	G	2591.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:117,128:0.52:245
chr7	16666759	rs11531477	G	C	2498.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:112,123:0.52:235
chr7	16676082	.	TA	T	196.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.889;ClippingRankSum=0.000;DP=157;ExcessHet=3.0103;FS=0.808;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.43;ReadPosRankSum=0.329;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:102,36:0.26:138
chr7	16705132	.	TTG	T	466.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.263;ClippingRankSum=0.000;DP=468;ExcessHet=3.0103;FS=0.565;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=2.650;QD=1.12;ReadPosRankSum=0.901;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:356,59:0.14:415
chr7	16713933	rs11465103	A	AT	643.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:1,30:0.97:31
chr7	16722353	rs818503	A	C	692.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.163;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=1.842;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.66;ReadPosRankSum=0.800;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:46,34:0.42:80
chr7	16725501	rs34699573	C	CT	142.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.488;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=0.000;QD=2.85;ReadPosRankSum=-0.819;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:32,18:0.36:50
chr7	16736479	rs7796792	C	G	1361.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:104,66:0.39:170
chr7	16745589	rs1149510	T	C	928.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:36,35:0.49:71
chr7	16793504	rs6975847	A	G	1838.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:71,85:0.54:156
chr7	16793668	rs75735669	A	G	8883.77	.	AC=1;AF=0.500;AN=2;DB;DP=907;set=Intersection	GT:AD:AF:DP	0/1:464,439:0.49:903
chr7	16793779	rs11405941	G	GC	8806.73	.	AC=2;AF=1.00;AN=2;DB;DP=228;MQ=60.09;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr7	16815786	rs2290836	C	G	4896.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.139;ClippingRankSum=0.000;DB;DP=425;ExcessHet=3.0103;FS=0.527;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.69;ReadPosRankSum=-0.745;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:190,229:0.55:419
chr7	16816000	rs2290837	T	C	1729.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:88,78:0.47:166
chr7	16818799	rs6461276	A	G	1279.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:61,56:0.48:117
chr7	16823095	rs11491	G	A	20330.77	.	AC=2;AF=1.00;AN=2;DB;DP=783;set=Intersection	GT:AD:AF:DP	1/1:6,772:0.99:778
chr7	16834444	rs2272246	C	T	4901.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr7	16834551	rs4719480	C	A	17354.77	.	AC=2;AF=1.00;AN=2;DB;DP=649;set=Intersection	GT:AD:AF:DP	1/1:0,644:1.00:644
chr7	16834597	rs6842	A	G	19335.77	.	AC=2;AF=1.00;AN=2;DB;DP=736;set=Intersection	GT:AD:AF:DP	1/1:1,728:1.00:729
chr7	16837404	rs819010	C	T	2261.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr7	16872913	rs4719482	G	A	1928.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:110,97:0.47:207
chr7	16899197	rs11798	C	T	3022.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr7	16901185	rs4236289	C	T	1143.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr7	16901523	rs56817783	TA	T	109.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.738;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.89;ReadPosRankSum=1.463;SOR=1.136;set=HC	GT:AD:AF:DP	0/1:21,17:0.45:38
chr7	16913394	rs10249749	A	G	5253.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr7	16913520	rs4472406	G	A	8669.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr7	16913617	rs4389824	A	G	2190.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr7	17349626	rs17779352	T	C	4747.77	.	AC=1;AF=0.500;AN=2;DB;DP=535;set=Intersection	GT:AD:AF:DP	0/1:290,241:0.45:531
chr7	17854532	rs2723501	G	T	4693.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.474;ClippingRankSum=0.000;DB;DP=444;ExcessHet=3.0103;FS=0.516;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=2.714;QD=10.67;ReadPosRankSum=1.716;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:209,231:0.53:440
chr7	17854575	rs34649849	G	GAA	1285.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.943;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.46;MQRankSum=3.198;QD=7.48;ReadPosRankSum=1.865;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:73,99:0.58:172
chr7	17854616	rs2723502	T	C	1042.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:48,51:0.52:99
chr7	17869854	rs73081336	C	G	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.55;ReadPosRankSum=-0.126;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr7	17874271	rs4721660	T	C	654.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr7	17874300	rs4721661	G	A	208.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:15,11:0.42:26
chr7	17890413	rs3839705	CA	C	412.73	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:24,25:0.51:49
chr7	17908130	rs2389858	T	A	882.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.070;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.733;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.25;ReadPosRankSum=1.139;SOR=0.597;set=HC	GT:AD:AF:DP	0/1:61,46:0.43:107
chr7	17913083	rs5882635	A	AC	4628.73	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr7	17962382	rs11397631	G	GA	1929.73	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:91,99:0.52:190
chr7	17979793	rs3800963	G	A	1554.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:55,63:0.53:118
chr7	18300132	rs13240203	C	T	390.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:23,18:0.44:41
chr7	18624800	rs2073974	T	C	4389.77	.	AC=1;AF=0.500;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	0/1:231,208:0.47:439
chr7	18630208	rs1726610	A	C	1435.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr7	18631098	.	ATGTG	A,ATG	3859.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.810;ClippingRankSum=0.000;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.52;MQRankSum=0.683;QD=25.90;ReadPosRankSum=-0.267;SOR=0.776;set=HC	GT:AD:AF:DP	1/2:9,42,98:0.28,0.66:149
chr7	18668945	rs67361882	AT	A	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.189;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=2.831;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=2.045;QD=0.67;ReadPosRankSum=-0.284;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:44,14:0.24:58
chr7	18674435	rs2285431	T	C	3577.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr7	18688033	.	ATG	A	261.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.789;ClippingRankSum=0.000;DP=126;ExcessHet=3.0103;FS=5.350;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.26;ReadPosRankSum=0.830;SOR=1.678;set=HC	GT:AD:AF:DP	0/1:95,21:0.18:116
chr7	18993870	rs2389998	C	T	586.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:32,29:0.48:61
chr7	19184545	.	G	A	5787.77	.	AC=1;AF=0.500;AN=2;DP=596;set=Intersection	GT:AD:AF:DP	0/1:307,281:0.48:588
chr7	19738359	rs199908969	TA	T	1797.73	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:57,62:0.52:119
chr7	19739947	rs145557463	C	G	1963.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:53,79:0.60:132
chr7	19744417	rs11543308	T	C	887.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:33,41:0.55:74
chr7	19761868	rs76009686	T	C	348.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:14,15:0.52:29
chr7	19763783	rs77583258	T	C	1161.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:76,54:0.42:130
chr7	19768879	.	G	GTTT	341.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.342;ClippingRankSum=0.000;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.49;MQRankSum=0.873;QD=17.99;ReadPosRankSum=0.467;SOR=1.371;set=HC	GT:AD:AF:DP	0/1:7,12:0.63:19
chr7	19813018	rs12673970	T	C	1999.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.031;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.50;ReadPosRankSum=-1.573;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:72,88:0.55:160
chr7	19813202	rs117555925	C	T	4241.77	.	AC=1;AF=0.500;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	0/1:199,206:0.51:405
chr7	19813338	rs117803408	C	G	825.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:39,36:0.48:75
chr7	20180425	rs72337102	TACAC	T,TAC	1387.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=34.69;SOR=2.191;set=HC	GT:AD:AF:DP	1/2:0,23,17:0.57,0.42:40
chr7	20180507	rs55989776	G	GAC	1230.73	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:55,45:0.45:100
chr7	20180717	rs3735615	C	G	3151.77	.	AC=1;AF=0.500;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	0/1:218,157:0.42:375
chr7	20371395	rs206197	T	C	1593.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr7	20403353	rs35420999	AT	A	4485.73	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:21,243:0.92:264
chr7	20430900	rs10227623	C	T	1052.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr7	20430960	rs3779506	T	C	2265.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr7	20438743	rs6945675	C	G	1429.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr7	20444532	rs2074424	C	T	1808.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:75,83:0.53:158
chr7	20663070	rs77363367	A	T	638.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:64,35:0.35:99
chr7	20668236	rs3033483	T	TTG	1304.73	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:50,47:0.48:97
chr7	20668277	rs78414512	C	A	1289.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:83,68:0.45:151
chr7	20683204	rs7349983	G	T	4450.77	.	AC=1;AF=0.500;AN=2;DB;DP=451;set=Intersection	GT:AD:AF:DP	0/1:229,214:0.48:443
chr7	20685508	rs11983326	T	G	8032.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:2,280:0.99:282
chr7	20685786	rs11769236	G	A	3237.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:140,159:0.53:299
chr7	20687181	rs2893006	C	T	2521.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:94,121:0.56:215
chr7	20687332	rs75784515	C	T	740.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:30,31:0.51:61
chr7	20687604	rs61732039	A	G	909.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:67,48:0.42:115
chr7	20689935	rs13244876	C	A	260.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.682;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.45;ReadPosRankSum=-0.218;SOR=0.919;set=HC	GT:AD:AF:DP	0/1:26,9:0.26:35
chr7	20689935	.	CCT	ACA	324	.	AC=1;AF=0.500;AN=2;BRF=0.24;FR=0.5000;HP=1;HapScore=2;MGOF=2;MMLQ=28;MQ=60.0;NF=1;NR=6;PP=324;QD=53.9239821232;SC=TTATTTAGAGCCTACTATGTG;SbPval=0.74;Source=Platypus;TC=33;TCF=6;TCR=27;TR=7;WE=20689957;WS=20689925;set=Platypus	GT:AD:AF:DP	1/0:26,7:0.21:33
chr7	20689937	rs11973722	T	A	260.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.002;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.15;ReadPosRankSum=-0.830;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:23,9:0.28:32
chr7	20689949	rs12674033	G	T	88.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:15,6:0.29:21
chr7	20690984	rs79943066	A	G	2977.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:156,136:0.47:292
chr7	20691013	rs3213623	C	T	5159.77	.	AC=1;AF=0.500;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	0/1:205,236:0.54:441
chr7	20691047	rs34603556	T	C	5325.77	.	AC=1;AF=0.500;AN=2;DB;DP=621;set=Intersection	GT:AD:AF:DP	0/1:333,272:0.45:605
chr7	20691219	rs61227829	G	A	2542.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:133,121:0.48:254
chr7	20698077	rs7807360	C	G	1005.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:30,48:0.62:78
chr7	20698270	rs2301641	A	G	12078.77	.	AC=2;AF=1.00;AN=2;DB;DP=474;set=Intersection	GT:AD:AF:DP	1/1:4,463:0.99:467
chr7	20698602	rs12700227	T	C	3095.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:172,154:0.47:326
chr7	20698804	rs73278683	C	A	719.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:41,33:0.45:74
chr7	20706645	rs12535128	G	T	412.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr7	20739774	rs5882753	AT	A	337.73	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:27,25:0.48:52
chr7	20762609	rs73085689	T	C	2184.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:1,71:0.99:72
chr7	20762646	rs62453384	G	T	4447.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr7	20762937	rs62453385	T	C	4188.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr7	20778646	rs6461515	G	A	2425.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:144,119:0.45:263
chr7	20778773	rs6461516	C	G	1256.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:83,63:0.43:146
chr7	20778844	rs11380694	A	AG	689.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.230;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=1.358;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.52;ReadPosRankSum=-0.368;SOR=0.445;set=HC	GT:AD:AF:DP	0/1:24,27:0.53:51
chr7	20803107	rs55827389	T	TC	2140.73	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr7	20823951	rs148247510	C	T	651.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:45,32:0.42:77
chr7	20824940	rs372591893	AGCC	A	3232.73	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:118,89:0.43:207
chr7	20825145	.	GGCAGCCGCGGCTGCTGCCGCGGCCGCC	G	134.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.533;ClippingRankSum=0.000;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.25;ReadPosRankSum=2.511;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:51,9:0.15:60
chr7	20826270	.	G	GA	80.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.034;ClippingRankSum=0.000;DP=187;ExcessHet=3.0103;FS=2.791;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=2.026;QD=0.46;ReadPosRankSum=1.245;SOR=0.451;set=HC	GT:AD:AF:DP	0/1:145,29:0.17:174
chr7	21468579	rs39303	G	A	543.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:14,20:0.59:34
chr7	21468869	rs141294478	TCC	T	4631.73	.	AC=2;AF=1.00;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.35;SOR=2.500;set=HC	GT:AD:AF:DP	1/1:0,124:1.00:124
chr7	21470536	rs40245	A	T	1857.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr7	21516627	rs3214203	AT	A	1355.73	.	AC=2;AF=1.00;AN=2;DB;DP=83;MQ=60.26;set=Intersection	GT:AD:AF:DP	1/1:4,75:0.95:79
chr7	21582917	rs2285942	C	T	525.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:39,25:0.39:64
chr7	21582963	rs2285943	GA	TT	1636.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;JOINED;set=Intersection	GT:AD:AF:DP	0/1:66,46:0.41:112
chr7	21583329	rs2285946	T	C	570.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:43,24:0.36:67
chr7	21584820	rs7781669	A	G	722.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:52,36:0.41:88
chr7	21599233	rs10950854	C	T	1495.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:79,71:0.47:150
chr7	21600902	rs4374884	A	G	1947.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:78,83:0.52:161
chr7	21603678	rs5008148	A	G	492.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:14,18:0.56:32
chr7	21603750	.	G	GA	430.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.711;ClippingRankSum=0.000;DP=101;ExcessHet=3.0103;FS=1.932;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=1.819;QD=4.44;ReadPosRankSum=0.216;SOR=0.483;set=HC	GT:AD:AF:DP	0/1:58,39:0.40:97
chr7	21609625	rs56832849	C	T	2068.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:100,99:0.50:199
chr7	21611399	rs66476925	G	C	792.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:40,39:0.49:79
chr7	21627909	rs3810897	A	G	596.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:26,25:0.49:51
chr7	21628237	rs6963535	C	T	15950.77	.	AC=2;AF=1.00;AN=2;DB;DP=600;set=Intersection	GT:AD:AF:DP	1/1:0,589:1.00:589
chr7	21630982	rs4615458	A	G	2658.77	.	AC=1;AF=0.500;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	0/1:208,139:0.40:347
chr7	21639818	rs6461586	T	C	987.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr7	21640361	rs10269582	T	C	3430.77	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:173,153:0.47:326
chr7	21640405	rs10224537	A	G	12746.77	.	AC=2;AF=1.00;AN=2;DB;DP=484;set=Intersection	GT:AD:AF:DP	1/1:0,478:1.00:478
chr7	21641218	rs3827657	G	A	7247.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr7	21646233	.	C	CT	549.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.183;ClippingRankSum=0.000;DP=220;ExcessHet=3.0103;FS=4.137;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=1.110;QD=3.62;ReadPosRankSum=0.688;SOR=1.148;set=HC	GT:AD:AF:DP	0/1:91,61:0.40:152
chr7	21654602	rs7779983	C	T	779.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:37,35:0.49:72
chr7	21657130	rs12539987	C	G	541.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr7	21658855	rs57208694	A	G	2536.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:133,113:0.46:246
chr7	21658964	rs68184450	C	T	543.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:44,26:0.37:70
chr7	21659554	rs112373177	A	ATTAAT	3036.73	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:108,79:0.42:187
chr7	21659645	rs56029521	T	C	3494.77	.	AC=1;AF=0.500;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	0/1:207,174:0.46:381
chr7	21695416	rs11769118	A	G	1949.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:90,82:0.48:172
chr7	21695649	rs4385378	G	A	2874.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:135,135:0.50:270
chr7	21722330	rs74298643	C	T	1179.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:63,58:0.48:121
chr7	21723431	rs55666134	G	A	5591.77	.	AC=1;AF=0.500;AN=2;DB;DP=579;set=Intersection	GT:AD:AF:DP	0/1:293,278:0.49:571
chr7	21723573	rs59447021	A	T	2456.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:90,107:0.54:197
chr7	21727186	rs62445282	A	G	1927.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:67,84:0.56:151
chr7	21727271	rs62445283	C	T	619.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:16,26:0.62:42
chr7	21730575	rs72657338	G	A	2644.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:166,130:0.44:296
chr7	21730647	rs7790948	T	G	1397.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:40,57:0.59:97
chr7	21765497	rs11768670	G	A	8240.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:1,316:1.00:317
chr7	21765636	rs2965424	T	C	1912.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr7	21775153	rs2072219	A	C	2268.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr7	21775210	rs2270022	A	G	5261.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr7	21775443	rs2072221	G	A	13515.77	.	AC=2;AF=1.00;AN=2;DB;DP=503;set=Intersection	GT:AD:AF:DP	1/1:1,495:1.00:496
chr7	21778449	rs1109806	C	T	3425.77	.	AC=1;AF=0.500;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	0/1:251,183:0.42:434
chr7	21779084	rs2906686	G	A	1763.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr7	21779104	rs933353	C	T	725.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:34,33:0.49:67
chr7	21779278	rs9639393	A	G	3554.77	.	AC=1;AF=0.500;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	0/1:171,164:0.49:335
chr7	21789442	rs4355679	T	C	4810.77	.	AC=1;AF=0.500;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	0/1:201,233:0.54:434
chr7	21805228	.	T	TCACACACACA	131.19	.	AC=2;AF=1.00;AN=2;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=65.59;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr7	21813318	rs11374411	A	AT	3234.73	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr7	21818486	rs4273751	A	G	350.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:23,18:0.44:41
chr7	21826199	rs2072093	G	C	592.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:33,24:0.42:57
chr7	21847457	rs6969900	A	G	332.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:20,18:0.47:38
chr7	21856151	rs2214326	G	A	3817.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:149,181:0.55:330
chr7	21856390	rs4141347	G	A	2308.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:91,104:0.53:195
chr7	21858043	rs10277757	A	G	445.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:18,20:0.53:38
chr7	21892023	.	T	TAAA	116.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.046;ClippingRankSum=0.000;DP=66;ExcessHet=3.0103;FS=1.616;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.16;ReadPosRankSum=-0.686;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:41,13:0.24:54
chr7	21893993	rs4722064	G	T	6928.77	.	AC=1;AF=0.500;AN=2;DB;DP=908;set=Intersection	GT:AD:AF:DP	0/1:518,375:0.42:893
chr7	21901540	rs17145720	T	C	1632.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:75,77:0.51:152
chr7	21901566	rs4722067	T	C	4378.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr7	21901740	rs35912578	C	CT	170.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.917;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=1.856;MLEAC=1;MLEAF=0.500;MQ=60.92;MQRankSum=1.718;QD=6.57;ReadPosRankSum=0.464;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:12,14:0.54:26
chr7	21907427	rs11773662	T	C	995.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:26,41:0.61:67
chr7	21907452	rs5882827	G	GT	2658.73	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:65,69:0.51:134
chr7	21907458	rs4995598	A	G	2776.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:72,75:0.51:147
chr7	21907696	rs11773744	T	C	750.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:19,29:0.60:48
chr7	21907722	rs55801704	C	CT	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.429;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.98;ReadPosRankSum=3.413;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:11,6:0.35:17
chr7	21920556	rs62445884	G	A	1594.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr7	21924014	rs6461613	A	G	1758.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr7	21931912	rs186004229	G	A	221.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:9,9:0.50:18
chr7	21932044	rs12537531	C	T	5186.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr7	21939485	rs34245961	C	T	1752.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:1,54:0.98:55
chr7	21940480	rs56268505	C	T	1139.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr7	21940557	rs10555456	AACTT	A	6304.73	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr7	21941861	rs60370798	ATCTT	A	3941.73	.	AC=2;AF=1.00;AN=2;DB;DP=166;MQ=60.13;set=Intersection	GT:AD:AF:DP	1/1:2,156:0.99:158
chr7	21943842	rs144495438	G	A	10011.77	.	AC=1;AF=0.500;AN=2;DB;DP=901;set=Intersection	GT:AD:AF:DP	0/1:423,473:0.53:896
chr7	21945086	rs6953368	C	A	3347.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr7	21945840	rs4445125	C	T	2358.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr7	21985338	rs3823667	G	A	1968.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.092;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.60;ReadPosRankSum=1.559;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:106,99:0.48:205
chr7	21985347	rs1406706	G	A	7163.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.12;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,204:1.00:204
chr7	21985484	rs370781066	G	A	694.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:21,31:0.60:52
chr7	22175836	rs141515509	C	G	1271.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:73,61:0.46:134
chr7	22190131	.	GAAA	G,GAA	1222.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.082;ClippingRankSum=0.000;DP=169;ExcessHet=3.0103;FS=5.128;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.45;MQRankSum=1.809;QD=11.12;ReadPosRankSum=-0.506;SOR=0.369;set=HC	GT:AD:AF:DP	1/2:19,31,60:0.28,0.55:110
chr7	22197507	rs7809342	A	G	5809.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr7	22200255	rs955484	G	C	2918.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:183,148:0.45:331
chr7	22202117	rs12592	G	A	3374.77	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:169,168:0.50:337
chr7	22202196	rs1981600	T	A	1525.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:89,72:0.45:161
chr7	22202485	rs1981601	T	C	1724.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:108,86:0.44:194
chr7	22206854	rs17709607	T	C	693.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:45,37:0.45:82
chr7	22242370	rs4722110	G	T	2228.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr7	22242535	rs4719687	T	C	5002.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:2,188:0.99:190
chr7	22330700	rs2302001	A	G	9068.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,323:1.00:323
chr7	22330862	rs367948789	TA	T	479.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.011;ClippingRankSum=0.000;DB;DP=266;ExcessHet=3.0103;FS=0.681;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.613;QD=2.34;ReadPosRankSum=-1.020;SOR=0.778;set=HC	GT:AD:AF:DP	0/1:136,69:0.34:205
chr7	22330953	rs2302002	T	G	1415.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr7	22349769	rs17146668	C	A	2918.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.932;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=0.677;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.86;ReadPosRankSum=0.254;SOR=0.780;set=HC	GT:AD:AF:DP	0/1:39,145:0.79:184
chr7	22355166	rs10607345	CTA	C	766.90	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:2,26:0.93:28
chr7	22357716	rs10950897	T	G	341.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.41;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr7	22532115	rs59026056	C	T	364.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.067;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=1.681;MLEAC=1;MLEAF=0.500;MQ=50.97;MQRankSum=-5.693;QD=3.72;ReadPosRankSum=1.963;SOR=0.351;set=HC	GT:AD:AF:DP	0/1:77,21:0.21:98
chr7	22532336	rs149580813	T	C	8439.77	.	AC=1;AF=0.500;AN=2;DB;DP=800;set=Intersection	GT:AD:AF:DP	0/1:409,387:0.49:796
chr7	22532806	rs117415937	G	C	272.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:47,15:0.24:62
chr7	22532917	rs201851675	T	C	4716.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.631;ClippingRankSum=0.000;DB;DP=427;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.87;MQRankSum=-18.486;QD=11.12;ReadPosRankSum=-1.006;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:290,134:0.32:424
chr7	22532925	rs200208526	A	T	5121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.024;ClippingRankSum=0.000;DB;DP=470;ExcessHet=3.0103;FS=1.192;MLEAC=1;MLEAF=0.500;MQ=57.08;MQRankSum=-19.167;QD=10.99;ReadPosRankSum=-1.428;SOR=0.792;set=HC	GT:AD:AF:DP	0/1:312,154:0.33:466
chr7	22532928	rs117582436	T	A	5742.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.212;ClippingRankSum=0.000;DB;DP=490;ExcessHet=3.0103;FS=0.561;MLEAC=1;MLEAF=0.500;MQ=57.24;MQRankSum=-18.650;QD=11.82;ReadPosRankSum=-1.529;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:322,164:0.34:486
chr7	22532986	rs16881812	C	A	4500.77	.	AC=1;AF=0.500;AN=2;DB;DP=610;set=Intersection	GT:AD:AF:DP	0/1:364,241:0.40:605
chr7	22533033	rs148687847	C	G	2951.77	.	AC=1;AF=0.500;AN=2;DB;DP=544;set=Intersection	GT:AD:AF:DP	0/1:368,171:0.32:539
chr7	22533119	rs200585731	C	G	173.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.815;ClippingRankSum=0.000;DB;DP=496;ExcessHet=3.0103;FS=4.619;MLEAC=1;MLEAF=0.500;MQ=57.88;MQRankSum=-18.858;QD=0.35;ReadPosRankSum=-2.340;SOR=1.375;set=HC	GT:AD:AF:DP	0/1:443,51:0.10:494
chr7	22533182	rs62619777	T	C	2754.77	.	AC=1;AF=0.500;AN=2;DB;DP=562;set=Intersection	GT:AD:AF:DP	0/1:403,157:0.28:560
chr7	22533235	rs62619778	T	C	4597.77	.	AC=1;AF=0.500;AN=2;DB;DP=566;set=Intersection	GT:AD:AF:DP	0/1:322,236:0.42:558
chr7	22533350	rs146447808	C	T	4386.77	.	AC=1;AF=0.500;AN=2;DB;DP=647;set=Intersection	GT:AD:AF:DP	0/1:408,237:0.37:645
chr7	22533397	rs16881810	T	C	2354.77	.	AC=1;AF=0.500;AN=2;DB;DP=479;set=Intersection	GT:AD:AF:DP	0/1:332,147:0.31:479
chr7	22534456	rs7787814	T	C	2727.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:122,135:0.53:257
chr7	22768572	rs2069840	C	G	1210.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:52,52:0.50:104
chr7	22857589	rs7782015	T	C	1406.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:65,69:0.51:134
chr7	22857682	rs28617621	A	G	1092.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:44,49:0.53:93
chr7	22861739	rs35353454	T	C	3123.77	.	AC=1;AF=0.500;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	0/1:178,148:0.45:326
chr7	22861978	rs4354222	G	A	943.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:37,39:0.51:76
chr7	22862192	rs2270106	A	G	4428.77	.	AC=1;AF=0.500;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	0/1:214,219:0.51:433
chr7	22896340	rs5882865	AC	A	373.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.544;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=72.284;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.34;ReadPosRankSum=0.627;SOR=0.000;set=HC	GT:AD:AF:DP	0/1:128,32:0.20:160
chr7	22985868	rs2286491	T	C	346.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:13,14:0.52:27
chr7	23000783	rs35493358	G	GCTCT	1563.73	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:26,39:0.60:65
chr7	23145837	rs1005786	G	C	1242.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:47,59:0.56:106
chr7	23163270	rs11982002	C	T	298.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:11,12:0.52:23
chr7	23164526	rs2058275	C	G	4839.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:1,173:0.99:174
chr7	23164701	rs15775	C	T	1707.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:86,82:0.49:168
chr7	23191625	rs2178140	G	C	1578.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:92,76:0.45:168
chr7	23191636	rs2178139	A	G	1806.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:115,93:0.45:208
chr7	23191664	rs2141306	G	A	2118.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:151,106:0.41:257
chr7	23191899	rs2141305	T	C	463.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:16,18:0.53:34
chr7	23195555	rs141774430	CTTTAT	C	4229.73	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr7	23221870	rs7808488	T	C	1093.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:47,44:0.48:91
chr7	23227555	.	GTC	G	120	.	AC=1;AF=0.500;AN=2;BRF=0.36;FR=0.5000;HP=2;HapScore=2;MGOF=16;MMLQ=23;MQ=60.0;NF=2;NR=2;PP=120;QD=32.25;SC=AATATTCTCTGTCTCTCTCTC;SbPval=0.63;Source=Platypus;TC=22;TCF=12;TCR=10;TR=4;WE=23227564;WS=23227545;set=Platypus	GT:AD:AF:DP	0/1:18,4:0.18:22
chr7	23286315	rs858239	G	A	508.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:31,25:0.45:56
chr7	23293098	rs199348	C	A	2611.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:188,130:0.41:318
chr7	23293746	rs199347	A	G	2867.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:112,133:0.54:245
chr7	23296533	rs199355	G	A	5784.77	.	AC=1;AF=0.500;AN=2;DB;DP=486;set=Intersection	GT:AD:AF:DP	0/1:214,263:0.55:477
chr7	23300049	rs199351	A	C	3187.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:169,142:0.46:311
chr7	23306020	rs156429	T	C	712.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:36,32:0.47:68
chr7	23307634	rs2307783	ATGGG	A	2420.73	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:84,66:0.44:150
chr7	23352512	rs199653	C	A	3346.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr7	23545047	rs140080513	T	C	89.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.947;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.48;ReadPosRankSum=-1.434;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:7,5:0.42:12
chr7	23545399	rs35281714	A	G	798.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:43,37:0.46:80
chr7	23552392	rs201252500	TA	T	244.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.632;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.297;QD=3.06;ReadPosRankSum=0.869;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:49,31:0.39:80
chr7	23562226	rs6976831	C	T	48.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:2,3:0.60:5
chr7	23719766	rs56391241	G	A	2230.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.31;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,100:1.00:100
chr7	23719779	rs56359038	G	A	3448.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.94;SOR=0.895;set=HC	GT:AD:AF:DP	1/1:0,128:1.00:128
chr7	23724401	rs74659913	A	G	640.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:21,25:0.54:46
chr7	23727944	rs7802834	T	C	579.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr7	23727960	rs13237857	C	T	264.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.048;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.51;ReadPosRankSum=3.099;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:9,14:0.61:23
chr7	23737795	rs5029444	T	C	3252.77	.	AC=1;AF=0.500;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	0/1:175,161:0.48:336
chr7	23757162	rs6945306	G	C	8930.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:0,343:1.00:343
chr7	23768907	rs12176610	A	G	175.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:10,8:0.44:18
chr7	23775454	rs10264952	G	A	3340.77	.	AC=1;AF=0.500;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	0/1:170,157:0.48:327
chr7	23775477	rs10264967	G	T	2634.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:155,128:0.45:283
chr7	23794139	rs34664371	TA	T	2711.73	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:77,88:0.53:165
chr7	23794183	rs4722267	A	G	681.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:28,27:0.49:55
chr7	23802579	rs2193826	G	C	379.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:17,16:0.48:33
chr7	23808604	rs61564984	C	A	533.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:32,24:0.43:56
chr7	23810517	rs7785154	G	A	839.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.17;SOR=2.737;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr7	23810517	.	GGAAATC	AGAAATC,AGAAATG	308	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.18;FR=0.5000,0.5000;HP=1;HapScore=3;MGOF=9;MMLQ=27;MQ=60.0;NF=19,8;NR=4,2;PP=308,164;QD=14.9030961977;SC=AAATCACTGCGGAAATCTGTT;SbPval=0.57;Source=Platypus;TC=23;TCF=19;TCR=4;TR=23,10;WE=23810531;WS=23810515;set=Platypus	GT:AF:DP	0/1:1.00:23
chr7	23810523	rs41273996	C	G	237.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.234;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=2.054;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.51;ReadPosRankSum=-0.271;SOR=0.239;set=HC	GT:AD:AF:DP	0/1:14,11:0.44:25
chr7	23810605	rs1469000	T	C	987.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:47,47:0.50:94
chr7	23810845	rs1469001	G	A	1346.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr7	23811795	rs10263079	T	G	830.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.715;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.45;ReadPosRankSum=3.157;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:15,22:0.59:37
chr7	23811800	rs10247878	G	T	830.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.982;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.77;ReadPosRankSum=3.701;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:18,22:0.55:40
chr7	23823144	rs10950961	A	G	765.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:43,40:0.48:83
chr7	23823355	rs6461737	A	G	1190.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:70,58:0.45:128
chr7	23826066	rs1862068	A	G	4827.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr7	23854717	rs2390814	C	T	384.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:23,20:0.47:43
chr7	23854838	rs5882915	G	GA	2476.73	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:106,83:0.44:189
chr7	24324759	rs16141	T	G	5773.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr7	24325009	rs5573	G	A	9851.77	.	AC=2;AF=1.00;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	1/1:0,362:1.00:362
chr7	24329001	rs113179092	AT	A	2621.73	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr7	24329133	rs5574	C	T	10970.77	.	AC=2;AF=1.00;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	1/1:0,401:1.00:401
chr7	24880255	rs145078575	T	C	1025.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:41,49:0.54:90
chr7	25181912	rs2285738	T	C	4035.77	.	AC=1;AF=0.500;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	0/1:215,205:0.49:420
chr7	25182001	rs2285737	C	T	1958.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:85,87:0.51:172
chr7	25182172	rs2285736	A	G	1160.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:22,45:0.67:67
chr7	25191044	rs12532548	G	A	365.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:15,18:0.55:33
chr7	25194506	rs12538022	T	C	232.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:23,11:0.32:34
chr7	25194618	rs2523073	G	A	1057.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:88,57:0.39:145
chr7	25194665	rs2523072	G	C	1602.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:87,77:0.47:164
chr7	25194753	rs12535348	C	T	1324.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:93,69:0.43:162
chr7	25194857	rs2717899	A	T	537.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:45,27:0.38:72
chr7	25194918	rs2523071	A	G	77.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:17,5:0.23:22
chr7	25200976	rs13221848	A	G	121.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:12,7:0.37:19
chr7	25218661	rs10642607	A	AAAACAAAC	779.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.567;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.89;ReadPosRankSum=1.481;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:12,17:0.59:29
chr7	25267934	rs877834	T	C	698.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:25,36:0.59:61
chr7	25267963	rs886354	G	C	2189.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr7	25268094	rs877835	C	T	390.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:19,19:0.50:38
chr7	26247984	.	C	CT	549.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;ClippingRankSum=0.000;DP=154;ExcessHet=3.0103;FS=7.547;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=2.570;QD=3.64;ReadPosRankSum=-2.226;SOR=1.354;set=HC	GT:AD:AF:DP	0/1:98,53:0.35:151
chr7	26386122	rs3801891	T	A	4604.77	.	AC=1;AF=0.500;AN=2;DB;DP=483;set=Intersection	GT:AD:AF:DP	0/1:249,227:0.48:476
chr7	26386154	rs3801890	T	C	4143.77	.	AC=1;AF=0.500;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	0/1:247,208:0.46:455
chr7	26386292	.	C	A	933.77	.	AC=1;AF=0.500;AN=2;DP=114;set=Intersection	GT:AD:AF:DP	0/1:69,42:0.38:111
chr7	26404071	rs2253569	G	A	850.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:55,40:0.42:95
chr7	26678856	rs57000259	A	G	3130.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:131,155:0.54:286
chr7	26685934	rs12671270	T	C	4835.77	.	AC=1;AF=0.500;AN=2;DB;DP=535;set=Intersection	GT:AD:AF:DP	0/1:286,244:0.46:530
chr7	26724279	rs212850	T	G	4888.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr7	26764991	rs139615753	TCA	T	200.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.688;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=1.189;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.54;ReadPosRankSum=1.457;SOR=0.468;set=HC	GT:AD:AF:DP	0/1:66,13:0.16:79
chr7	26778406	rs10951145	A	G	7007.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr7	26883761	.	TA	T	252.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.983;ClippingRankSum=0.000;DP=265;ExcessHet=3.0103;FS=0.687;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.22;ReadPosRankSum=-0.196;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:159,49:0.24:208
chr7	27135096	rs45571645	G	T	4546.77	.	AC=1;AF=0.500;AN=2;DB;DP=466;set=Intersection	GT:AD:AF:DP	0/1:235,213:0.48:448
chr7	27135314	rs10951154	C	T	14939.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.951;ClippingRankSum=0.000;DB;DP=843;ExcessHet=3.0103;FS=2.650;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.13;ReadPosRankSum=-0.358;SOR=0.873;set=HC	GT:AD:AF:DP	1/1:41,634:0.94:675
chr7	27141267	rs706016	C	T	4472.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr7	27147451	rs59078276	TA	T	581.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.056;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=9.223;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.65;ReadPosRankSum=2.151;SOR=2.391;set=HC	GT:AD:AF:DP	1/1:6,40:0.87:46
chr7	27169093	rs2158218	T	G	18527.77	.	AC=2;AF=1.00;AN=2;DB;DP=682;set=Intersection	GT:AD:AF:DP	1/1:0,665:1.00:665
chr7	27169617	rs6943542	T	C	5216.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr7	27169934	rs10251056	A	G	2593.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr7	27170145	rs6944345	T	G	2844.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr7	27196069	rs2301720	A	C	8206.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr7	27196113	rs2301721	C	T	9990.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.81;SOR=0.915;set=HC	GT:AD:AF:DP	1/1:0,287:1.00:287
chr7	27196113	.	CCCC	TCCC,TCCT	2095	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.43;FR=0.5000,0.5000;HP=4;HapScore=1;MGOF=18;MMLQ=24;MQ=60.0;NF=85,32;NR=112,46;PP=2095,1175;QD=10.8110213835;SC=AACAGAGAAGCCCCCGCCGTA;SbPval=0.52;Source=Platypus;TC=198;TCF=85;TCR=113;TR=197,78;WE=27196124;WS=27196103;set=Platypus	GT:AF:DP	0/1:0.99:198
chr7	27196116	rs78410337	C	T	2353.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.075;ClippingRankSum=0.000;DB;DP=287;ExcessHet=3.0103;FS=0.916;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.23;ReadPosRankSum=0.069;SOR=0.767;set=HC	GT:AD:AF:DP	0/1:167,119:0.42:286
chr7	27203139	rs7810502	G	A	1775.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.10;SOR=3.804;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr7	27238691	rs2071265	C	G	3744.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr7	27279191	rs3801321	T	G	5173.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr7	27566053	rs12700813	G	C	1246.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:41,55:0.57:96
chr7	27578167	rs9639553	C	G	1127.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:44,47:0.52:91
chr7	27581495	rs6462029	T	C	1603.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:73,77:0.51:150
chr7	27582783	rs978447	G	A	1373.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:66,66:0.50:132
chr7	27668860	rs6415252	C	T	700.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:30,30:0.50:60
chr7	27671899	rs7779990	T	C	1352.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:51,63:0.55:114
chr7	27671901	rs73073128	T	C	1147.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:69,53:0.43:122
chr7	27672199	.	CAA	C	107.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.437;ClippingRankSum=0.000;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.59;ReadPosRankSum=-0.415;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:22,8:0.27:30
chr7	27689338	.	AT	A	67.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.455;ClippingRankSum=0.000;DP=114;ExcessHet=3.0103;FS=1.796;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=3.207;QD=0.82;ReadPosRankSum=-1.346;SOR=0.321;set=HC	GT:AD:AF:DP	0/1:66,17:0.20:83
chr7	27807441	rs7807729	G	A	1572.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.69;SOR=1.547;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr7	27807450	rs7807738	G	C	1591.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.89;SOR=1.040;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr7	27807589	rs7790914	T	C	2449.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr7	27868483	rs34270007	T	TA	317.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.384;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=3.176;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.59;ReadPosRankSum=0.608;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:14,23:0.62:37
chr7	27886011	rs141603370	C	CATATACGTATACGTGTAT	1691.73	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:49,34:0.41:83
chr7	27886171	rs6462054	A	G	4576.77	.	AC=1;AF=0.500;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	0/1:181,210:0.54:391
chr7	28031704	rs73089199	T	C	2500.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:74,109:0.60:183
chr7	28319234	rs177484	A	C	4550.77	.	AC=1;AF=0.500;AN=2;DB;DP=488;set=Intersection	GT:AD:AF:DP	0/1:264,217:0.45:481
chr7	28449965	rs12538330	T	C	3254.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:161,150:0.48:311
chr7	28534501	rs3216916	C	CT	3925.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.997;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=8.935;MLEAC=2;MLEAF=1.000;MQ=60.27;MQRankSum=0.542;QD=19.93;ReadPosRankSum=0.073;SOR=0.136;set=HC	GT:AD:AF:DP	1/1:14,183:0.93:197
chr7	28662583	rs41289	C	T	1135.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr7	28676906	rs41309	A	T	1787.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr7	28758638	rs879593	T	G	2291.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.852;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=40.21;ReadPosRankSum=1.850;SOR=2.985;set=HC	GT:AD:AF:DP	1/1:1,56:0.98:57
chr7	28758648	rs879592	A	G	2075.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.13;SOR=4.758;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr7	28857606	rs12531253	G	A	3574.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr7	28858456	rs10951205	A	G	5094.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr7	28996220	rs1006521	G	A	9797.77	.	AC=2;AF=1.00;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	1/1:1,364:1.00:365
chr7	28996944	rs740250	T	C	4747.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr7	28997497	rs67010340	GC	G	8803.73	.	AC=2;AF=1.00;AN=2;DB;DP=330;MQ=60.13;set=Intersection	GT:AD:AF:DP	1/1:2,320:0.99:322
chr7	28997596	rs5883174	G	GC	3287.73	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr7	29070209	rs7313	G	A	10910.77	.	AC=2;AF=1.00;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	1/1:0,414:1.00:414
chr7	29103867	rs644763	T	C	8589.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.13;QD=35.49;SOR=1.123;set=HC	GT:AD:AF:DP	1/1:0,242:1.00:242
chr7	29103867	.	TGGAAAGACAT	CGGAAAGACAC,CGGAAAGACAT	1563	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.4;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=11;MMLQ=24;MQ=60.16;NF=33,69;NR=55,107;PP=1563,979;QD=18.3689531234;SC=GAAGGGGCATTGGAAAGACAT;SbPval=0.6;Source=Platypus;TC=176;TCF=69;TCR=107;TR=88,176;WE=29103885;WS=29103857;set=Platypus	GT:AF:DP	0/1:0.50:176
chr7	29103877	rs2074783	T	C	2715.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.023;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=0.519;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=0.334;QD=12.87;ReadPosRankSum=-1.158;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:90,121:0.57:211
chr7	29103944	rs34641639	A	AT	2482.73	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr7	29105776	rs2270027	A	G	1491.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.193;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=1.731;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.24;ReadPosRankSum=0.461;SOR=0.577;set=HC	GT:AD:AF:DP	0/1:123,83:0.40:206
chr7	29111578	rs2074784	A	C	6291.77	.	AC=1;AF=0.500;AN=2;DB;DP=656;set=Intersection	GT:AD:AF:DP	0/1:347,300:0.46:647
chr7	29111620	rs317719	A	C	11233.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr7	29111634	rs2074785	C	A	2772.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:141,119:0.46:260
chr7	29132212	rs2687636	A	G	3594.77	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:168,166:0.50:334
chr7	29186256	rs245880	A	G	4394.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr7	29186576	rs245881	A	G	8371.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr7	29437867	rs7799981	T	C	1863.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr7	29439641	rs12669481	G	A	1051.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr7	29520042	rs1476991	G	A	3319.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:146,157:0.52:303
chr7	29523563	rs12665897	G	A	3465.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:120,163:0.58:283
chr7	29544298	.	C	CT	622.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.315;ClippingRankSum=0.000;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=2.207;QD=3.92;ReadPosRankSum=-0.027;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:103,56:0.35:159
chr7	29544468	rs73684725	A	G	2821.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:143,132:0.48:275
chr7	29546763	rs11388362	A	AT	1383.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.227;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=6.542;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.000;QD=11.44;ReadPosRankSum=0.464;SOR=1.455;set=HC	GT:AD:AF:DP	0/1:30,91:0.75:121
chr7	29552463	rs1420145	C	G	1223.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr7	29605975	rs2302618	C	G	23108.77	.	AC=2;AF=1.00;AN=2;DB;DP=878;set=Intersection	GT:AD:AF:DP	1/1:0,873:1.00:873
chr7	29720404	rs850108	A	G	1304.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.543;ClippingRankSum=0.000;DB;DP=295;ExcessHet=3.0103;FS=1.602;MLEAC=1;MLEAF=0.500;MQ=57.41;MQRankSum=-4.983;QD=4.51;ReadPosRankSum=-0.683;SOR=0.823;set=HC	GT:AD:AF:DP	0/1:210,79:0.27:289
chr7	29771546	rs112712037	CT	C	220.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.818;ClippingRankSum=0.000;DB;DP=234;ExcessHet=3.0103;FS=0.629;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=2.041;QD=0.98;ReadPosRankSum=-0.431;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:173,53:0.23:226
chr7	29924072	rs3750092	A	G	8046.77	.	AC=1;AF=0.500;AN=2;DB;DP=721;set=Intersection	GT:AD:AF:DP	0/1:335,363:0.52:698
chr7	29944062	rs4722959	A	T	7828.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr7	29954137	rs1056061	A	G	2805.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:162,139:0.46:301
chr7	30029714	rs62446663	T	C	732.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:54,35:0.39:89
chr7	30054624	rs57981260	C	A	797.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:31,35:0.53:66
chr7	30062202	rs2302626	A	G	864.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:24,33:0.58:57
chr7	30085766	rs10951259	T	G	556.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:15,22:0.59:37
chr7	30100667	rs143386179	CT	C	694.73	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:23,31:0.57:54
chr7	30101683	rs35889168	C	G	1382.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:85,68:0.44:153
chr7	30101716	rs17326411	C	T	1051.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:69,50:0.42:119
chr7	30113617	rs35610327	A	AG	1519.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.524;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.46;MQRankSum=0.000;QD=9.10;ReadPosRankSum=2.082;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:87,80:0.48:167
chr7	30113706	rs11977829	A	G	4506.77	.	AC=1;AF=0.500;AN=2;DB;DP=531;set=Intersection	GT:AD:AF:DP	0/1:288,238:0.45:526
chr7	30113862	rs149548208	T	TTG,TTGTGTGTGTG	2470.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=200;set=Intersection	GT:AF:DP	1/2:0.38,0.46:108
chr7	30118508	rs1109208	C	T	1575.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:112,71:0.39:183
chr7	30157472	rs147327175	C	CAGATT	762.73	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:27,21:0.44:48
chr7	30174773	rs73689406	C	G	7858.77	.	AC=1;AF=0.500;AN=2;DB;DP=873;set=Intersection	GT:AD:AF:DP	0/1:466,400:0.46:866
chr7	30177095	rs6954451	G	T	308.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:20,16:0.44:36
chr7	30177278	rs6954379	C	T	4178.77	.	AC=1;AF=0.500;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	0/1:180,191:0.51:371
chr7	30485703	rs55996014	G	GC	360.73	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:125,36:0.22:161
chr7	30485710	rs6958571	A	C	1023.73	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:127,44:0.26:171
chr7	30485741	rs2907749	A	G	1415.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:180,91:0.34:271
chr7	30536874	rs38405	G	A	2611.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.039;ClippingRankSum=0.000;DB;DP=274;ExcessHet=3.0103;FS=2.630;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.57;ReadPosRankSum=0.887;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:145,128:0.47:273
chr7	30537622	.	C	CATATATATATAT	182	.	AC=2;AF=1.00;AN=2;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.40;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr7	30538399	rs71532977	C	G	681.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:30,28:0.48:58
chr7	30538651	rs38409	T	C	2527.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:104,116:0.53:220
chr7	30540399	rs38410	G	T	215.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:3,10:0.77:13
chr7	30544360	rs38414	G	A	8691.77	.	AC=1;AF=0.500;AN=2;DB;DP=791;set=Intersection	GT:AD:AF:DP	0/1:370,413:0.53:783
chr7	30634661	rs1049402	C	G	6349.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr7	30635600	rs10265589	C	T	2110.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:93,95:0.51:188
chr7	30638292	rs77213416	G	A	528.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:29,23:0.44:52
chr7	30643069	rs1558064	C	A	528.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:13,23:0.64:36
chr7	30651938	rs1986756	G	A	5736.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr7	30655542	rs11553502	T	C	5516.77	.	AC=1;AF=0.500;AN=2;DB;DP=551;set=Intersection	GT:AD:AF:DP	0/1:270,274:0.50:544
chr7	30656650	rs78284531	G	A	339.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:11,14:0.56:25
chr7	30662087	rs75855065	T	C	4514.77	.	AC=1;AF=0.500;AN=2;DB;DP=503;set=Intersection	GT:AD:AF:DP	0/1:267,222:0.45:489
chr7	30662174	rs17159291	C	T	1864.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:105,89:0.46:194
chr7	30662237	rs10249885	G	A	872.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:42,38:0.47:80
chr7	30666596	.	CA	C	254.80	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.263;ClippingRankSum=0.000;DP=52;ExcessHet=3.0103;FS=2.062;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.31;ReadPosRankSum=0.428;SOR=0.260;set=HC	GT:AD:AF:DP	0/1:20,28:0.58:48
chr7	30671087	rs14270	T	C	5207.77	.	AC=1;AF=0.500;AN=2;DB;DP=543;set=Intersection	GT:AD:AF:DP	0/1:281,258:0.48:539
chr7	30673345	rs2240401	C	T	3629.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:155,166:0.52:321
chr7	30673401	rs4593	A	G	3030.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:178,156:0.47:334
chr7	30673512	rs70983380	TA	T	446.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.661;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=3.467;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=0.000;QD=10.15;ReadPosRankSum=0.844;SOR=0.264;set=HC	GT:AD:AF:DP	0/1:9,35:0.80:44
chr7	30694260	rs3779250	C	T	2567.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:130,119:0.48:249
chr7	30695388	rs111415208	A	G	1682.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.413;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=1.718;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=0.978;QD=19.12;ReadPosRankSum=0.293;SOR=0.520;set=HC	GT:AD:AF:DP	0/1:42,46:0.52:88
chr7	30695393	rs148095983	G	GA	1684.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.441;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=4.316;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=0.917;QD=21.33;ReadPosRankSum=-1.052;SOR=0.365;set=HC	GT:AD:AF:DP	0/1:35,44:0.56:79
chr7	30695397	.	C	T	1452.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.507;ClippingRankSum=0.000;DP=74;ExcessHet=3.0103;FS=3.168;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.18;ReadPosRankSum=-0.192;SOR=0.408;set=HC	GT:AD:AF:DP	0/1:35,37:0.51:72
chr7	30695406	rs7812133	G	A	1268.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.365;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.942;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.22;ReadPosRankSum=-0.655;SOR=0.489;set=HC	GT:AD:AF:DP	0/1:33,33:0.50:66
chr7	30701665	rs149265265	T	C	280.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:11,12:0.52:23
chr7	30701914	rs4723000	G	A	2025.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:125,106:0.46:231
chr7	30702244	rs2270008	C	T	571.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:31,24:0.44:55
chr7	30705105	rs8192496	G	A	1229.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:55,54:0.50:109
chr7	30721770	rs8175360	T	C	3505.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:137,159:0.54:296
chr7	30728452	rs917195	C	T	7284.77	.	AC=1;AF=0.500;AN=2;DB;DP=511;set=Intersection	GT:AD:AF:DP	0/1:307,203:0.40:510
chr7	30728472	rs917196	C	G	7496.77	.	AC=1;AF=0.500;AN=2;DB;DP=535;set=Intersection	GT:AD:AF:DP	0/1:320,214:0.40:534
chr7	30728557	rs58682124	A	G	2628.77	.	AC=1;AF=0.500;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	0/1:210,137:0.39:347
chr7	30728908	rs255100	A	T	1551.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:127,81:0.39:208
chr7	30739409	rs255117	C	T	409.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:22,18:0.45:40
chr7	30739525	rs255119	G	A	1703.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:61,81:0.57:142
chr7	30739691	rs107540	A	G	406.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:17,18:0.51:35
chr7	30791848	rs4723010	G	A	3434.77	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:177,163:0.48:340
chr7	30795288	rs2302339	A	G	4340.77	.	AC=1;AF=0.500;AN=2;DB;DP=502;set=Intersection	GT:AD:AF:DP	0/1:276,220:0.44:496
chr7	30795331	rs2302340	A	G	5255.77	.	AC=1;AF=0.500;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	0/1:196,238:0.55:434
chr7	30795436	rs4720015	T	G	5041.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr7	30805809	.	T	TCACA	1056.73	.	AC=1;AF=0.500;AN=2;DP=120;set=Intersection	GT:AD:AF:DP	0/1:74,42:0.36:116
chr7	30805811	rs71830535	TCA	T,ACA	2843.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=139;set=Intersection	GT:AF:DP	1/2:0.54,0.40:115
chr7	30805913	rs3901848	G	A	12430.77	.	AC=2;AF=1.00;AN=2;DB;DP=491;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.07;QD=25.79;SOR=0.952;set=HC	GT:AD:AF:DP	1/1:0,482:1.00:482
chr7	30817998	rs11762566	G	A	6196.77	.	AC=1;AF=0.500;AN=2;DB;DP=594;set=Intersection	GT:AD:AF:DP	0/1:288,302:0.51:590
chr7	30825229	rs2269921	C	G	837.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr7	30830641	rs62446934	G	T	1093.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:28,44:0.61:72
chr7	30831082	rs12701034	C	T	17063.77	.	AC=2;AF=1.00;AN=2;DB;DP=650;set=Intersection	GT:AD:AF:DP	1/1:0,639:1.00:639
chr7	30876123	rs10247874	G	A	1563.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:59,70:0.54:129
chr7	30876432	rs10258097	A	G	1540.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:60,66:0.52:126
chr7	30890038	rs62449090	G	A	3373.77	.	AC=1;AF=0.500;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	0/1:186,164:0.47:350
chr7	30892891	rs78103803	C	T	215.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:11,10:0.48:21
chr7	30892967	rs62449096	G	A	1295.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:53,58:0.52:111
chr7	31011485	rs4988501	A	G	5983.77	.	AC=1;AF=0.500;AN=2;DB;DP=525;set=Intersection	GT:AD:AF:DP	0/1:244,262:0.52:506
chr7	31023502	rs28371570	G	A	653.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:20,26:0.57:46
chr7	31121501	rs2302475	T	C	256.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:12,12:0.50:24
chr7	31125082	rs11410563	A	AG	3932.73	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr7	31132235	rs112436908	CT	C	634.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.941;ClippingRankSum=0.000;DB;DP=361;ExcessHet=3.0103;FS=3.086;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.89;ReadPosRankSum=-1.489;SOR=0.505;set=HC	GT:AD:AF:DP	0/1:242,94:0.28:336
chr7	31135471	rs2267734	G	A	1439.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr7	31589077	rs117297547	G	A	3253.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:174,152:0.47:326
chr7	31592733	rs7811042	C	A	6784.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr7	31594166	rs2286710	C	T	11761.77	.	AC=2;AF=1.00;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	1/1:0,434:1.00:434
chr7	31594258	rs12155214	G	T	6481.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr7	31611758	rs67930674	G	T	4654.77	.	AC=1;AF=0.500;AN=2;DB;DP=493;set=Intersection	GT:AD:AF:DP	0/1:258,232:0.47:490
chr7	31617733	rs6945679	T	C	19374.77	.	AC=2;AF=1.00;AN=2;DB;DP=728;set=Intersection	GT:AD:AF:DP	1/1:1,706:1.00:707
chr7	31618008	rs10252720	A	G	6693.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr7	31681765	rs10239388	C	T	2124.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr7	31682453	rs4141001	C	T	9705.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	1/1:0,356:1.00:356
chr7	31683410	rs10247620	G	A	31080.77	.	AC=2;AF=1.00;AN=2;DB;DP=1152;set=Intersection	GT:AD:AF:DP	1/1:0,1143:1.00:1143
chr7	31683610	rs38398	G	A	10238.77	.	AC=2;AF=1.00;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	1/1:0,366:1.00:366
chr7	31691697	rs3735424	T	C	2301.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr7	31697913	rs35589779	C	CT	594.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.019;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=7.513;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=1.604;QD=6.76;ReadPosRankSum=0.646;SOR=0.245;set=HC	GT:AD:AF:DP	0/1:49,39:0.44:88
chr7	31735263	rs34173	G	C	7665.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:1,277:1.00:278
chr7	31735297	rs34174	T	G	3819.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.791;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=2.787;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.76;ReadPosRankSum=-0.859;SOR=0.504;set=HC	GT:AD:AF:DP	0/1:83,101:0.55:184
chr7	31735300	rs2240966	G	A	3789.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.202;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=2.108;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.91;ReadPosRankSum=-1.255;SOR=0.502;set=HC	GT:AD:AF:DP	0/1:78,95:0.55:173
chr7	31830095	rs982857	A	G	1202.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr7	31855420	rs1860789	A	G	5078.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr7	31855569	rs2302450	G	A	7595.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.266;ClippingRankSum=0.000;DB;DP=731;ExcessHet=3.0103;FS=0.518;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.43;ReadPosRankSum=1.187;SOR=0.640;set=HC	GT:AD:AF:DP	0/1:362,366:0.50:728
chr7	31855578	rs1860790	G	A	26461.77	.	AC=2;AF=1.00;AN=2;DB;DP=751;set=Intersection	GT:AD:AF:DP	1/1:0,747:1.00:747
chr7	31877402	.	G	C	4706.77	.	AC=1;AF=0.500;AN=2;DP=496;set=Intersection	GT:AD:AF:DP	0/1:261,230:0.47:491
chr7	31890104	rs2072430	G	A	569.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.374;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.28;ReadPosRankSum=0.353;SOR=0.536;set=HC	GT:AD:AF:DP	0/1:19,16:0.46:35
chr7	31890104	.	GAT	AAC	241	.	AC=1;AF=0.500;AN=2;BRF=0.27;FR=0.5000;HP=1;HapScore=2;MGOF=14;MMLQ=28;MQ=60.0;NF=14;NR=1;PP=241;QD=19.6311916575;SC=GATTGAAGCTGATCAGACTGA;SbPval=0.59;Source=Platypus;TC=34;TCF=32;TCR=2;TR=15;WE=31890114;WS=31890094;set=Platypus	GT:AD:AF:DP	1/0:19,15:0.44:34
chr7	31890106	rs917756	T	C	1683.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr7	31890128	rs2072431	G	T	921.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:35,29:0.45:64
chr7	31920395	rs61729940	G	A	1808.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:81,88:0.52:169
chr7	32092037	rs2190128	G	C	1805.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:69,78:0.53:147
chr7	32209227	rs977623	A	C	1014.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:21,38:0.64:59
chr7	32209283	rs977624	T	C	1526.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:74,71:0.49:145
chr7	32209425	rs977625	A	G	13040.77	.	AC=2;AF=1.00;AN=2;DB;DP=497;set=Intersection	GT:AD:AF:DP	1/1:0,489:1.00:489
chr7	32209459	rs977626	C	T	4310.77	.	AC=1;AF=0.500;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	0/1:216,210:0.49:426
chr7	32248984	rs10951324	G	A	620.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:43,31:0.42:74
chr7	32249216	rs2240676	A	G	450.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:17,19:0.53:36
chr7	32338337	rs215607	G	A	7326.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr7	32527009	rs7800049	G	A	7049.77	.	AC=1;AF=0.500;AN=2;DB;DP=713;set=Intersection	GT:AD:AF:DP	0/1:356,346:0.49:702
chr7	32528366	rs35608030	C	T	919.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:33,41:0.55:74
chr7	32529936	rs1584614	G	C	6753.77	.	AC=1;AF=0.500;AN=2;DB;DP=644;set=Intersection	GT:AD:AF:DP	0/1:301,332:0.52:633
chr7	32591135	rs3213972	G	A	4252.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr7	32591158	rs3213973	G	A	3209.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr7	32593234	rs10717407	CT	C	1509.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.087;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=4.906;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.459;QD=12.18;ReadPosRankSum=0.575;SOR=1.585;set=HC	GT:AD:AF:DP	0/1:18,106:0.85:124
chr7	32593271	rs6961786	G	A	6871.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr7	32594278	rs2290210	A	G	931.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr7	32598087	rs12673921	G	A	2919.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr7	32598138	rs12673881	C	T	3504.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr7	32598359	rs1562828	G	A	607.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr7	32598524	rs1466144	G	A	1763.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr7	32599204	rs34973430	A	AT	769.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr7	32609565	rs2305320	A	G	3483.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.00;SOR=1.681;set=HC	GT:AD:AF:DP	1/1:0,134:1.00:134
chr7	32613020	rs1993050	A	G	4380.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr7	32615553	rs6462381	C	T	8238.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr7	32619653	rs6462383	T	A	795.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr7	32620325	rs35499747	T	TTG	2912.73	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:2,77:0.97:79
chr7	32623250	rs1817046	C	T	1382.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr7	32660758	rs2302066	C	A	2972.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:1,105:0.99:106
chr7	32772477	rs2923266	C	A	136.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.632;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=9.240;MLEAC=1;MLEAF=0.500;MQ=56.33;MQRankSum=-10.557;QD=0.99;ReadPosRankSum=-1.704;SOR=0.189;set=HC	GT:AD:AF:DP	0/1:116,22:0.16:138
chr7	32854758	rs2305336	A	C	893.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr7	33003171	rs3110942	G	A	4964.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr7	33016120	rs3750116	G	T	4562.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr7	33028487	rs35727868	C	T	735.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:26,32:0.55:58
chr7	33136983	rs6462460	G	A	7507.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr7	33186082	rs1969575	C	G	3841.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr7	33282577	rs7793096	G	A	5138.77	.	AC=1;AF=0.500;AN=2;DB;DP=497;set=Intersection	GT:AD:AF:DP	0/1:246,247:0.50:493
chr7	33380598	rs11981364	G	T	3423.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:161,165:0.51:326
chr7	33380673	rs10486527	T	C	1543.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:85,69:0.45:154
chr7	33385852	rs6974593	C	T	7881.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr7	33388618	rs9785054	C	T	898.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr7	33391094	rs76983967	A	T	205.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,8:0.67:12
chr7	33545179	rs115809567	G	A	2470.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:104,119:0.53:223
chr7	33644941	rs1050719	T	C	3497.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.214;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=5.979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.34;ReadPosRankSum=1.411;SOR=1.162;set=HC	GT:AD:AF:DP	0/1:79,93:0.54:172
chr7	33644948	rs1050721	C	T	3353.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.246;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=2.258;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.36;ReadPosRankSum=1.078;SOR=0.962;set=HC	GT:AD:AF:DP	0/1:70,87:0.55:157
chr7	33767350	rs2232122	G	A	2072.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:90,98:0.52:188
chr7	33767397	rs2232123	C	T	3397.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:159,159:0.50:318
chr7	33977125	.	GGT	G	94	.	AC=1;AF=0.500;AN=2;BRF=0.57;FR=0.5000;HP=2;HapScore=2;MGOF=2;MMLQ=27;MQ=60.0;NF=0;NR=3;PP=94;QD=32.6666666667;SC=GGAGAAGTAGGGTGTGTGTGT;SbPval=1.0;Source=Platypus;TC=17;TCF=1;TCR=16;TR=3;WE=33977134;WS=33977115;set=Platypus	GT:AD:AF:DP	1/0:14,3:0.18:17
chr7	34091665	.	A	G	285.77	.	AC=1;AF=0.500;AN=2;DP=35;set=Intersection	GT:AD:AF:DP	0/1:19,14:0.42:33
chr7	34101562	rs3083769	G	GTTTT	907.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.240;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.21;ReadPosRankSum=-0.218;SOR=0.416;set=HC	GT:AD:AF:DP	0/1:13,23:0.64:36
chr7	34192762	rs6968741	G	C	10501.77	.	AC=2;AF=1.00;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	1/1:0,391:1.00:391
chr7	34698210	rs2530548	A	G	7608.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr7	34698234	rs2530549	A	C	6352.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr7	34698251	rs2530550	C	G	5427.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr7	34698321	rs2530551	A	G	2129.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.96;SOR=3.014;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr7	34698331	rs401256	G	T	1753.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.97;SOR=3.967;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr7	34699826	rs35018938	AG	A	11728.73	.	AC=1;AF=0.500;AN=2;DB;DP=828;set=Intersection	GT:AD:AF:DP	0/1:425,391:0.48:816
chr7	34699973	rs2530553	T	C	1091.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:53,42:0.44:95
chr7	34724373	rs11290993	CA	C	1502.73	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:7,91:0.93:98
chr7	34725283	rs17169985	T	A	1988.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:90,94:0.51:184
chr7	34725322	rs740623	T	A	2520.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:133,119:0.47:252
chr7	34725539	rs1419837	C	T	1010.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:46,47:0.51:93
chr7	34818113	rs324981	A	T	6820.77	.	AC=1;AF=0.500;AN=2;DB;DP=641;set=Intersection	GT:AD:AF:DP	0/1:304,330:0.52:634
chr7	34819232	rs55797048	A	C	1463.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:62,73:0.54:135
chr7	34867255	rs5883474	C	CA	95.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.296;ClippingRankSum=-0.000;DB;DP=18;ExcessHet=3.0103;FS=8.921;MLEAC=1;MLEAF=0.500;MQ=61.19;MQRankSum=1.521;QD=7.36;ReadPosRankSum=-1.471;SOR=0.022;set=HC	GT:AD:AF:DP	0/1:8,5:0.38:13
chr7	34874038	rs727162	C	G	6213.77	.	AC=1;AF=0.500;AN=2;DB;DP=572;set=Intersection	GT:AD:AF:DP	0/1:274,293:0.52:567
chr7	34878843	rs73693327	G	C	40.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr7	34979082	rs3735410	C	T	495.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:25,25:0.50:50
chr7	34979707	rs114622245	A	G	188.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.556;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=1.760;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.21;ReadPosRankSum=0.062;SOR=0.301;set=HC	GT:AD:AF:DP	0/1:11,12:0.52:23
chr7	34979748	.	C	CT	100.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.651;ClippingRankSum=0.000;DP=61;ExcessHet=3.0103;FS=1.265;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=1.733;QD=1.80;ReadPosRankSum=2.546;SOR=1.109;set=HC	GT:AD:AF:DP	0/1:41,15:0.27:56
chr7	34981591	rs35242437	G	GT	573.73	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:18,20:0.53:38
chr7	35050217	rs7782779	A	G	2065.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:136,105:0.44:241
chr7	35145811	rs2107636	T	A	167.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.070;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=4.298;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.59;ReadPosRankSum=-0.790;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:20,10:0.33:30
chr7	35225518	rs10262841	C	A	2924.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:139,143:0.51:282
chr7	35270988	rs2109090	G	A	280.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:5,11:0.69:16
chr7	35280693	rs2072434	C	T	1415.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:65,64:0.50:129
chr7	35288276	rs17675148	T	C	1558.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:78,70:0.47:148
chr7	35288458	rs147314121	CAG	C	347.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.538;ClippingRankSum=0.000;DB;DP=522;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.78;ReadPosRankSum=1.669;SOR=0.615;set=HC	GT:AD:AF:DP	0/1:394,54:0.12:448
chr7	35289889	rs5883498	C	CA	2564.73	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr7	35289941	rs5883499	C	CA	1570.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr7	35293193	rs336283	A	G	3225.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr7	35414453	rs17608167	T	C	1992.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:88,92:0.51:180
chr7	35414592	rs144982595	C	T	5578.77	.	AC=1;AF=0.500;AN=2;DB;DP=498;set=Intersection	GT:AD:AF:DP	0/1:236,259:0.52:495
chr7	35414769	rs2553113	C	T	7548.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.877;ClippingRankSum=0.000;DB;DP=437;ExcessHet=3.0103;FS=2.474;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.35;ReadPosRankSum=1.069;SOR=0.883;set=HC	GT:AD:AF:DP	0/1:234,201:0.46:435
chr7	35414772	rs2553114	C	T	7503.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.639;ClippingRankSum=0.000;DB;DP=417;ExcessHet=3.0103;FS=2.494;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.08;ReadPosRankSum=0.636;SOR=0.903;set=HC	GT:AD:AF:DP	0/1:221,194:0.47:415
chr7	35673799	rs2305333	T	C	708.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:31,27:0.47:58
chr7	35678214	rs3816422	C	T	515.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:15,21:0.58:36
chr7	35709962	rs3837111	TA	T	1762.73	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:61,65:0.52:126
chr7	35733747	rs138215488	G	T	1896.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:82,86:0.51:168
chr7	35840898	rs59008252	G	GC	4785.73	.	AC=2;AF=1.00;AN=2;DB;DP=122;MQ=60.09;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr7	35841886	rs74849143	A	G	5141.77	.	AC=1;AF=0.500;AN=2;DB;DP=482;set=Intersection	GT:AD:AF:DP	0/1:228,246:0.52:474
chr7	35851738	rs57121305	CA	C	182.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.121;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.94;ReadPosRankSum=1.713;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:6,17:0.74:23
chr7	35872551	rs74528020	G	A	262.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:29,16:0.36:45
chr7	35928645	rs17172038	T	G	826.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:26,36:0.58:62
chr7	35928678	rs58918750	T	A	274.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:18,13:0.42:31
chr7	36124292	rs1986593	G	A	3261.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:145,155:0.52:300
chr7	36320821	rs196586	G	A	3535.77	.	AC=1;AF=0.500;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	0/1:188,175:0.48:363
chr7	36324436	rs13232200	G	A	1106.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:44,53:0.55:97
chr7	36338749	rs196613	T	C	5743.77	.	AC=1;AF=0.500;AN=2;DB;DP=639;set=Intersection	GT:AD:AF:DP	0/1:337,294:0.47:631
chr7	36370499	rs196659	C	G	1345.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:61,60:0.50:121
chr7	36370555	rs196660	G	T	2221.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:83,106:0.56:189
chr7	36374799	rs3779230	G	A	3303.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:154,154:0.50:308
chr7	36396480	rs3735401	A	G	3649.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:169,171:0.50:340
chr7	36445856	rs197367	G	A	4650.77	.	AC=1;AF=0.500;AN=2;DB;DP=529;set=Intersection	GT:AD:AF:DP	0/1:284,232:0.45:516
chr7	36447287	rs10227127	A	G	773.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:72,34:0.32:106
chr7	36447349	rs143969069	A	ACTT	3917.73	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:162,105:0.39:267
chr7	36447600	rs3801315	T	C	2139.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:126,96:0.43:222
chr7	36456613	.	AC	A	39	.	AC=1;AF=0.500;AN=2;BRF=0.36;FR=0.5000;HP=9;HapScore=4;MGOF=5;MMLQ=23;MQ=60.57;NF=3;NR=2;PP=39;QD=10.2;SC=GAAAAAAAAAACACACACAAG;SbPval=0.17;Source=Platypus;TC=13;TCF=11;TCR=2;TR=5;WE=36456621;WS=36456593;set=Platypus	GT:AD:AF:DP	1/0:8,5:0.38:13
chr7	36463335	rs2302527	A	G	337.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:9,12:0.57:21
chr7	36465570	rs6957214	T	C	648.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:23,31:0.57:54
chr7	36465606	rs375398580	CT	C	131.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.365;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.000;QD=2.12;ReadPosRankSum=-1.001;SOR=0.584;set=HC	GT:AD:AF:DP	0/1:43,19:0.31:62
chr7	36552729	rs59476355	A	AT	10416.73	.	AC=2;AF=1.00;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	1/1:0,357:1.00:357
chr7	36552790	rs57543920	G	GT	11865.73	.	AC=2;AF=1.00;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	1/1:0,375:1.00:375
chr7	36561469	rs6462681	G	T	1479.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr7	36569895	rs77218025	T	C	1998.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:89,88:0.50:177
chr7	36571697	rs117303607	C	T	938.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:34,46:0.57:80
chr7	36588405	rs5883561	A	AC	1173.73	.	AC=1;AF=0.500;AN=2;DB;DP=92;MQ=60.47;set=Intersection	GT:AD:AF:DP	0/1:44,41:0.48:85
chr7	36588955	rs3735397	G	A	185.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:9,9:0.50:18
chr7	36616341	rs2727830	G	A	117.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:5,6:0.55:11
chr7	36655900	rs143770406	GGA	G	8010.73	.	AC=1;AF=0.500;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	0/1:164,204:0.55:368
chr7	36656147	rs2727818	A	T	2440.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:84,100:0.54:184
chr7	36656205	rs13235549	A	G	939.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:33,37:0.53:70
chr7	36657971	rs73340176	T	G	1273.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:75,61:0.45:136
chr7	36660502	rs35645334	CATGA	C	831.73	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:26,23:0.47:49
chr7	36661423	rs2727822	T	C	3512.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:141,173:0.55:314
chr7	36662975	rs57443480	T	C	440.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:20,17:0.46:37
chr7	36671720	.	G	GA	179.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.851;ClippingRankSum=0.000;DP=271;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.75;ReadPosRankSum=-0.516;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:197,44:0.18:241
chr7	36726136	rs60875600	AT	A	780.73	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:33,48:0.59:81
chr7	36726476	.	CGTGTGT	C,CGT	2537.73	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;DP=98;set=Intersection	GT:AF:DP	1/2:0.26,0.74:57
chr7	36726481	.	G	A	352.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.224;ClippingRankSum=0.000;DP=90;ExcessHet=3.0103;FS=12.508;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.41;ReadPosRankSum=1.492;SOR=2.670;set=HC	GT:AD:AF:DP	0/1:58,22:0.28:80
chr7	36729757	rs7790095	T	C	7789.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr7	36729822	rs11427708	C	CA	7323.73	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:4,312:0.99:316
chr7	36729864	rs58087691	G	T	2782.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:144,135:0.48:279
chr7	36729951	rs6462691	C	T	1299.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:57,59:0.51:116
chr7	36763560	rs6462703	C	T	3144.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr7	36763657	rs73346026	G	A	2814.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:169,144:0.46:313
chr7	36763688	rs2228411	C	T	3280.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:147,157:0.52:304
chr7	36895503	.	C	A	71.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.014;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;FS=5.184;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.66;ReadPosRankSum=0.328;SOR=0.116;set=HC	GT:AD:AF:DP	0/1:21,6:0.22:27
chr7	36934448	rs6462722	A	G	4529.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr7	37073097	rs58163267	TA	T	81.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.499;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=2.053;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.57;ReadPosRankSum=-1.095;SOR=0.266;set=HC	GT:AD:AF:DP	0/1:37,15:0.29:52
chr7	37172594	.	ATT	A	367.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.201;ClippingRankSum=0.000;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.18;ReadPosRankSum=-2.210;SOR=0.480;set=HC	GT:AD:AF:DP	0/1:47,24:0.34:71
chr7	37252929	rs7809365	T	C	372.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:45,24:0.35:69
chr7	37253093	rs7809548	T	A	241.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:6,12:0.67:18
chr7	37256392	rs7806425	G	A	4031.77	.	AC=1;AF=0.500;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	0/1:186,189:0.50:375
chr7	37257580	rs6462745	C	A	451.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:17,19:0.53:36
chr7	37298800	rs2717968	C	T	2598.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:139,121:0.47:260
chr7	37299056	rs2717969	C	T	932.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:27,39:0.59:66
chr7	37355590	rs11383031	C	CT	3505.73	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr7	37889838	rs141149150	TTTTC	T	1971.73	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:95,56:0.37:151
chr7	37890081	rs2722371	G	A	1839.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:88,78:0.47:166
chr7	37890267	rs2722372	G	A	1460.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:81,72:0.47:153
chr7	37890316	rs2598044	C	T	877.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:46,42:0.48:88
chr7	37896896	rs3213976	G	A	870.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.923;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=2.525;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.29;ReadPosRankSum=-0.509;SOR=0.950;set=HC	GT:AD:AF:DP	0/1:61,44:0.42:105
chr7	37901581	rs2249451	G	A	9406.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:0,350:1.00:350
chr7	37903853	rs3816419	A	T	635.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:35,32:0.48:67
chr7	37903904	rs3816418	C	T	1008.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:40,48:0.55:88
chr7	37904065	rs3841582	TAAC	T	355.73	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:9,10:0.53:19
chr7	37904099	rs3816417	G	A	162.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:5,7:0.58:12
chr7	37907304	rs10250905	T	C	1861.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:64,78:0.55:142
chr7	37923849	rs1993052	G	A	609.79	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:4,24:0.86:28
chr7	37923987	rs142516478	A	G	1162.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:35,50:0.59:85
chr7	37924737	rs1530822	T	G	2445.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:88,103:0.54:191
chr7	37924879	rs2242027	A	G	5596.77	.	AC=1;AF=0.500;AN=2;DB;DP=489;set=Intersection	GT:AD:AF:DP	0/1:220,266:0.55:486
chr7	37927779	rs2251179	T	G	983.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:41,36:0.47:77
chr7	37933983	rs10260487	C	G	796.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:26,33:0.56:59
chr7	37934146	rs56128139	TA	CT	1755.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;JOINED;set=Intersection	GT:AD:AF:DP	0/1:32,46:0.59:78
chr7	37934234	rs10261071	G	A	404.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:9,17:0.65:26
chr7	37947164	rs1802073	G	T	1870.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:95,94:0.50:189
chr7	37951726	rs1132553	G	A	819.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:37,37:0.50:74
chr7	37953720	rs2248554	C	A	815.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:56,36:0.39:92
chr7	37953840	rs1132552	C	T	6245.77	.	AC=1;AF=0.500;AN=2;DB;DP=584;set=Intersection	GT:AD:AF:DP	0/1:274,300:0.52:574
chr7	37960262	rs201513905	AAGGCAGTGGCAGC	A	5686.73	.	AC=1;AF=0.500;AN=2;DB;DP=872;set=Intersection	GT:AD:AF:DP	0/1:321,283:0.47:604
chr7	37960955	rs4723716	T	G	3626.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr7	37961001	rs10248138	C	A	1754.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:105,89:0.46:194
chr7	37961158	.	C	T	816.77	.	AC=1;AF=0.500;AN=2;DP=104;set=Intersection	GT:AD:AF:DP	0/1:59,42:0.42:101
chr7	37966201	rs12666164	T	C	1036.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:56,46:0.45:102
chr7	37988589	rs2044831	C	T	7535.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr7	37989775	rs1450851	T	C	4317.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr7	38282130	rs35917252	G	GGT	3977.73	.	AC=1;AF=0.500;AN=2;DB;DP=520;set=Intersection	GT:AD:AF:DP	0/1:208,149:0.42:357
chr7	38282166	rs2009434	T	G	3156.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:162,154:0.49:316
chr7	38284649	rs112543808	A	T	1681.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:188,89:0.32:277
chr7	38284794	rs2008893	C	T	8670.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.474;ClippingRankSum=0.000;DB;DP=883;ExcessHet=3.0103;FS=1.921;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=-6.547;QD=9.92;ReadPosRankSum=3.040;SOR=0.839;set=HC	GT:AD:AF:DP	0/1:612,262:0.30:874
chr7	38284804	rs4629747	T	C	8485.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.536;ClippingRankSum=0.000;DB;DP=856;ExcessHet=3.0103;FS=1.225;MLEAC=1;MLEAF=0.500;MQ=59.75;MQRankSum=-7.962;QD=10.00;ReadPosRankSum=3.770;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:604,245:0.29:849
chr7	38284808	rs4434531	A	C	8318.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.854;ClippingRankSum=0.000;DB;DP=856;ExcessHet=3.0103;FS=1.232;MLEAC=1;MLEAF=0.500;MQ=59.75;MQRankSum=-8.055;QD=9.80;ReadPosRankSum=3.742;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:608,241:0.28:849
chr7	38284834	rs67534383	A	G	5843.77	.	AC=1;AF=0.500;AN=2;DB;DP=768;set=Intersection	GT:AD:AF:DP	0/1:563,198:0.26:761
chr7	38284854	rs73360756	C	T	5228.77	.	AC=1;AF=0.500;AN=2;DB;DP=684;set=Intersection	GT:AD:AF:DP	0/1:516,163:0.24:679
chr7	38284887	.	T	G	1464	.	AC=1;AF=0.500;AN=2;BRF=0.43;FR=0.5000;HP=3;HapScore=1;MGOF=83;MMLQ=22;MQ=58.85;NF=40;NR=75;PP=1464;QD=13.0327931526;SC=TTTGTCAAGGTGTGTGTGTGT;SbPval=0.66;Source=Platypus;TC=383;TCF=142;TCR=241;TR=115;WE=38284895;WS=38284875;set=Platypus	GT:AD:AF:DP	1/0:268,115:0.30:383
chr7	38289234	rs143849539	G	A	896.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:90,39:0.30:129
chr7	38292857	rs12701617	G	A	1531.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:64,63:0.50:127
chr7	38292890	rs10267672	T	C	2847.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:105,128:0.55:233
chr7	38292916	rs10252198	C	T	4191.77	.	AC=1;AF=0.500;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	0/1:181,191:0.51:372
chr7	38308946	rs2907767	G	A	935.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:40,39:0.49:79
chr7	38309102	rs2075010	A	C	3352.77	.	AC=1;AF=0.500;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	0/1:234,165:0.41:399
chr7	38313079	rs55819448	G	C	2534.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:68,111:0.62:179
chr7	38331271	rs1860520	C	A	4380.77	.	AC=1;AF=0.500;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	0/1:206,205:0.50:411
chr7	38331504	rs1860521	C	T	3027.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:150,144:0.49:294
chr7	38356943	rs34482025	G	GA	4400.73	.	AC=1;AF=0.500;AN=2;DB;DP=534;set=Intersection	GT:AD:AF:DP	0/1:244,234:0.49:478
chr7	38357075	rs11769443	T	C	4302.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr7	38388735	rs191612253	A	G	680.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.736;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=7.390;MLEAC=1;MLEAF=0.500;MQ=53.49;MQRankSum=4.496;QD=11.16;ReadPosRankSum=2.012;SOR=0.214;set=HC	GT:AD:AF:DP	0/1:26,35:0.57:61
chr7	38388773	rs13227721	G	A	817.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:46,40:0.47:86
chr7	38388895	rs76205258	A	T	2050.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:113,89:0.44:202
chr7	38389410	rs140194030	G	C	5839.77	.	AC=1;AF=0.500;AN=2;DB;DP=505;set=Intersection	GT:AD:AF:DP	0/1:249,252:0.50:501
chr7	38393278	rs76380259	GT	G	1875.73	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:103,84:0.45:187
chr7	38393319	rs201871758	A	G	3010.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:174,147:0.46:321
chr7	38393343	rs77429066	T	C	4595.77	.	AC=1;AF=0.500;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	0/1:220,211:0.49:431
chr7	38393367	rs115392268	T	A	5111.77	.	AC=1;AF=0.500;AN=2;DB;DP=526;set=Intersection	GT:AD:AF:DP	0/1:274,245:0.47:519
chr7	38393390	rs73357290	T	G	6789.77	.	AC=1;AF=0.500;AN=2;DB;DP=624;set=Intersection	GT:AD:AF:DP	0/1:302,313:0.51:615
chr7	38393424	rs73357292	G	A	6867.77	.	AC=1;AF=0.500;AN=2;DB;DP=648;set=Intersection	GT:AD:AF:DP	0/1:313,327:0.51:640
chr7	38393448	rs78292907	G	C	6744.77	.	AC=1;AF=0.500;AN=2;DB;DP=601;set=Intersection	GT:AD:AF:DP	0/1:282,310:0.52:592
chr7	38393524	rs73357293	C	T	4664.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.493;ClippingRankSum=0.000;DB;DP=291;ExcessHet=3.0103;FS=10.127;MLEAC=1;MLEAF=0.500;MQ=56.84;MQRankSum=0.134;QD=16.20;ReadPosRankSum=-0.811;SOR=1.145;set=HC	GT:AD:AF:DP	0/1:159,129:0.45:288
chr7	38393534	rs74465876	C	T	4533.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.117;ClippingRankSum=0.000;DB;DP=267;ExcessHet=3.0103;FS=3.364;MLEAC=1;MLEAF=0.500;MQ=55.74;MQRankSum=-0.710;QD=17.04;ReadPosRankSum=-1.503;SOR=0.849;set=HC	GT:AD:AF:DP	0/1:146,120:0.45:266
chr7	38393592	rs34822522	C	A	3319.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:188,150:0.44:338
chr7	38393654	rs147704672	T	G	4573.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.345;ClippingRankSum=0.000;DB;DP=513;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.39;MQRankSum=-2.413;QD=9.00;ReadPosRankSum=0.151;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:282,226:0.44:508
chr7	38393713	rs2215952	A	G	11436.77	.	AC=2;AF=1.00;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	1/1:4,435:0.99:439
chr7	38393798	rs3999882	A	G	683.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:88,37:0.30:125
chr7	38397930	rs2392550	A	G	1689.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.78;QD=27.70;SOR=1.498;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr7	38398530	rs192382860	GT	AC	17009.77	.	AC=1;AF=0.500;AN=2;DB;DP=819;JOINED;set=Intersection	GT:AD:AF:DP	0/1:379,434:0.53:813
chr7	38398564	rs1810377	A	G	6697.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.855;ClippingRankSum=0.000;DB;DP=562;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.55;MQRankSum=-4.726;QD=11.98;ReadPosRankSum=1.371;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:268,291:0.52:559
chr7	38398564	.	AG	GC	2944	.	AC=1;AF=0.500;AN=2;BRF=0.42;FR=0.5000;HP=2;HapScore=1;MGOF=27;MMLQ=24;MQ=54.7;NF=76;NR=160;PP=2944;QD=20;SC=TAGAAGCACCAGTAGGGCCCA;SbPval=0.53;Source=Platypus;TC=464;TCF=150;TCR=314;TR=236;WE=38398573;WS=38398554;set=Platypus	GT:AD:AF:DP	0/1:228,236:0.51:464
chr7	38398565	rs2020451	G	C	20823.77	.	AC=2;AF=1.00;AN=2;DB;DP=558;set=Intersection	GT:AD:AF:DP	1/1:0,554:1.00:554
chr7	38398610	rs1808313	C	G	2365.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:152,99:0.39:251
chr7	38402496	rs2735118	A	G	20228.77	.	AC=2;AF=1.00;AN=2;DB;DP=737;set=Intersection	GT:AD:AF:DP	1/1:0,733:1.00:733
chr7	38402781	rs2011898	A	G	11162.77	.	AC=2;AF=1.00;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	1/1:1,399:1.00:400
chr7	38407438	rs61747402	C	T	3459.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:168,151:0.47:319
chr7	38424328	rs2810	T	C	630.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:47,28:0.37:75
chr7	38424702	rs34834299	T	TA	463.73	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:25,32:0.56:57
chr7	38429370	rs6977263	C	T	3842.77	.	AC=1;AF=0.500;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	0/1:222,195:0.47:417
chr7	38429552	rs36122520	T	A	1836.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:78,86:0.52:164
chr7	38429572	rs35606872	GT	G	2058.73	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:58,61:0.51:119
chr7	38429584	rs34824107	C	G	1406.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:46,57:0.55:103
chr7	38431430	rs6949992	A	G	1071.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:67,54:0.45:121
chr7	38431644	rs79759611	G	GC	2440.73	.	AC=2;AF=1.00;AN=2;DB;DP=72;MQ=60.15;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr7	38433726	rs35024632	T	G	3854.77	.	AC=1;AF=0.500;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	0/1:242,190:0.44:432
chr7	38457688	rs10247761	C	A	447.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:28,20:0.42:48
chr7	38460546	rs1019287	G	A	2279.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr7	38462153	rs13240983	C	T	2197.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.052;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=2.677;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=1.204;QD=18.16;ReadPosRankSum=-0.704;SOR=0.468;set=HC	GT:AD:AF:DP	0/1:50,71:0.59:121
chr7	38462154	rs201839612	GTATCTATCTATCTATC	G	554.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.169;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=12.081;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=-0.736;QD=6.10;ReadPosRankSum=4.736;SOR=2.594;set=HC	GT:AD:AF:DP	0/1:71,20:0.22:91
chr7	38462179	rs13228275	T	C	1550.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.153;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=1.351;QD=20.68;ReadPosRankSum=-2.487;SOR=0.865;set=HC	GT:AD:AF:DP	0/1:35,40:0.53:75
chr7	38462183	rs113131464	T	C	1496.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.933;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=1.279;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=1.266;QD=22.34;ReadPosRankSum=-3.893;SOR=0.465;set=HC	GT:AD:AF:DP	0/1:29,38:0.57:67
chr7	38466659	rs78935089	A	G	532.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:36,24:0.40:60
chr7	38467923	rs6958300	A	G	16194.77	.	AC=2;AF=1.00;AN=2;DB;DP=615;set=Intersection	GT:AD:AF:DP	1/1:1,607:1.00:608
chr7	38468695	rs2392572	C	T	13577.77	.	AC=2;AF=1.00;AN=2;DB;DP=490;set=Intersection	GT:AD:AF:DP	1/1:0,487:1.00:487
chr7	38475878	rs17171345	C	G	3577.77	.	AC=1;AF=0.500;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	0/1:208,171:0.45:379
chr7	38500782	rs12670885	G	A	389.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:23,17:0.42:40
chr7	38503558	rs73352668	T	A	1634.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:68,74:0.52:142
chr7	38504905	rs722336	C	A	194.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:8,9:0.53:17
chr7	38505014	rs722335	A	C	1035.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:59,51:0.46:110
chr7	38505025	rs722334	G	A	3166.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr7	38514868	rs41279585	G	A	589.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:21,25:0.54:46
chr7	38516446	rs76663355	T	C	1574.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:73,73:0.50:146
chr7	38530568	rs2043786	G	T	6495.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr7	38530807	rs3837078	T	TA	5017.73	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr7	38533972	rs3735089	A	C	723.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:55,35:0.39:90
chr7	38543095	rs3832480	C	CG	89.73	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:57,16:0.22:73
chr7	38543103	rs10225047	T	G	3260.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.26;SOR=5.110;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr7	38543104	rs3735087	G	GC,GGC	1358.73	.	AC=1,0;AF=0.500,0.00;ALERT;AN=2;DB;DP=98;set=Intersection	GT:AF:DP	0/1:0.61:89
chr7	38543371	rs6946268	C	T	6675.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr7	38725804	rs11980087	C	T	6196.77	.	AC=1;AF=0.500;AN=2;DB;DP=664;set=Intersection	GT:AD:AF:DP	0/1:368,290:0.44:658
chr7	38725883	rs12701651	C	A	6846.77	.	AC=1;AF=0.500;AN=2;DB;DP=684;set=Intersection	GT:AD:AF:DP	0/1:353,323:0.48:676
chr7	38780883	rs6951429	C	T	1394.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr7	38780924	rs6975410	T	C	1348.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr7	38782951	rs10254567	G	A	4639.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr7	38796570	rs2240350	G	A	1595.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:90,81:0.47:171
chr7	38796748	rs2392599	C	T	845.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr7	38810880	rs11431870	T	TA	506.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.370;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.24;ReadPosRankSum=1.351;SOR=0.556;set=HC	GT:AD:AF:DP	0/1:34,36:0.51:70
chr7	38813711	rs976350	C	T	6449.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr7	38816441	rs1468347	A	G	3588.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:162,164:0.50:326
chr7	38816487	rs4236355	G	A	1805.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:79,81:0.51:160
chr7	38829347	rs1557941	C	T	3049.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:142,147:0.51:289
chr7	38829465	rs1001476	C	T	2756.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:173,138:0.44:311
chr7	38835035	rs11984145	C	T	1593.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.919;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=0.609;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.90;ReadPosRankSum=0.642;SOR=0.792;set=HC	GT:AD:AF:DP	0/1:85,76:0.47:161
chr7	38835926	rs17171466	A	G	962.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:45,42:0.48:87
chr7	38857364	rs2072248	G	A	3063.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:151,144:0.49:295
chr7	38869708	rs7790054	C	T	4322.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr7	38908876	rs3735346	T	C	5362.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.877;ClippingRankSum=0.000;DB;DP=552;ExcessHet=3.0103;FS=4.958;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.89;ReadPosRankSum=0.936;SOR=0.447;set=HC	GT:AD:AF:DP	0/1:269,273:0.50:542
chr7	39125413	rs1950001	T	G	2915.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:116,122:0.51:238
chr7	39243750	rs4507668	A	G	2912.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:117,140:0.54:257
chr7	39243963	rs35792719	T	A	2033.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:110,92:0.46:202
chr7	39243978	rs35489214	A	G	1424.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:83,63:0.43:146
chr7	39379325	rs2074936	C	T	5472.77	.	AC=1;AF=0.500;AN=2;DB;DP=527;set=Intersection	GT:AD:AF:DP	0/1:258,258:0.50:516
chr7	39472669	rs2302125	C	T	4361.77	.	AC=1;AF=0.500;AN=2;DB;DP=442;set=Intersection	GT:AD:AF:DP	0/1:235,205:0.47:440
chr7	39472708	rs2302123	A	G	6517.77	.	AC=1;AF=0.500;AN=2;DB;DP=694;set=Intersection	GT:AD:AF:DP	0/1:363,325:0.47:688
chr7	39472846	rs2302122	G	A	7073.77	.	AC=1;AF=0.500;AN=2;DB;DP=667;set=Intersection	GT:AD:AF:DP	0/1:323,333:0.51:656
chr7	39490982	rs7801100	A	C	535.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:17,17:0.50:34
chr7	39500352	rs885689	C	G	503.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:20,20:0.50:40
chr7	39605959	rs17713790	C	T	2172.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:79,97:0.55:176
chr7	39649055	rs4723883	A	G	348.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:18,14:0.44:32
chr7	39649275	rs4723884	G	A	4478.77	.	AC=1;AF=0.500;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	0/1:154,202:0.57:356
chr7	39649456	rs4723885	G	C	5644.77	.	AC=1;AF=0.500;AN=2;DB;DP=534;set=Intersection	GT:AD:AF:DP	0/1:263,264:0.50:527
chr7	39873126	.	A	AGCG	2744.73	.	AC=1;AF=0.500;AN=2;DP=160;set=Intersection	GT:AD:AF:DP	0/1:80,71:0.47:151
chr7	40087320	rs57364877	GT	G	600.74	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:7,41:0.85:48
chr7	40127710	rs377247573	CT	C	659.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.130;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=6.538;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=1.495;QD=5.89;ReadPosRankSum=2.113;SOR=0.373;set=HC	GT:AD:AF:DP	0/1:60,52:0.46:112
chr7	40220412	rs7778061	T	C	1801.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr7	40220507	rs2036041	C	G	1907.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.50;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr7	40221714	rs36019419	A	G	126.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr7	40229072	rs4720354	G	A	1358.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr7	40229127	rs10236765	A	T	1203.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.047;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=0.738;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.46;ReadPosRankSum=-0.039;SOR=0.851;set=HC	GT:AD:AF:DP	0/1:48,57:0.54:105
chr7	40234742	rs11326652	CT	C	1414.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.912;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=2.890;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=0.715;QD=11.69;ReadPosRankSum=-0.175;SOR=0.336;set=HC	GT:AD:AF:DP	0/1:20,101:0.83:121
chr7	40277228	rs76667176	T	C	4054.77	.	AC=1;AF=0.500;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	0/1:188,194:0.51:382
chr7	40356315	rs10245165	A	T	1849.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:86,81:0.49:167
chr7	40356554	.	G	GT	56.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.618;ClippingRankSum=0.000;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.40;MQRankSum=2.460;QD=1.89;ReadPosRankSum=-0.144;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:20,10:0.33:30
chr7	40489083	rs7809620	C	T	2466.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:137,118:0.46:255
chr7	40538810	rs10249126	A	C	1956.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:133,100:0.43:233
chr7	41368666	.	TGAAAGAAAGAAA	T,TGAAAGAAAGAAAGAAA	1117.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=39.92;SOR=3.258;set=HC	GT:AD:AF:DP	1/2:0,17,11:0.61,0.39:28
chr7	42005678	rs929387	G	A	3383.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr7	42007071	rs4724083	C	T	868.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr7	42064852	rs846273	C	G	4363.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr7	42084829	rs699493	A	G	3474.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr7	42088222	rs846266	T	C	3944.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr7	42262935	rs199612920	G	GA	456.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.287;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=2.245;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.053;QD=6.52;ReadPosRankSum=0.032;SOR=0.419;set=HC	GT:AD:AF:DP	0/1:34,36:0.51:70
chr7	42950640	rs643138	C	T	7118.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr7	42951646	rs28372722	C	T	5270.77	.	AC=1;AF=0.500;AN=2;DB;DP=536;set=Intersection	GT:AD:AF:DP	0/1:267,265:0.50:532
chr7	42970733	rs619664	C	T	7747.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr7	42974827	rs601057	A	C	2024.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:98,87:0.47:185
chr7	42976789	rs630191	A	G	5304.77	.	AC=1;AF=0.500;AN=2;DB;DP=448;set=Intersection	GT:AD:AF:DP	0/1:202,240:0.54:442
chr7	42977091	rs631132	G	A	2744.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:104,119:0.53:223
chr7	43190479	rs12702015	T	G	2442.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:79,110:0.58:189
chr7	43400656	rs368684213	CGTGT	C	873.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=4.803;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=34.95;ReadPosRankSum=-2.344;SOR=3.126;set=HC	GT:AD:AF:DP	1/1:2,23:0.92:25
chr7	43483981	rs61756574	G	C	4258.77	.	AC=1;AF=0.500;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	0/1:198,205:0.51:403
chr7	43484310	rs73098706	T	C	3374.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:163,144:0.47:307
chr7	43485248	rs6960889	A	G	3143.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr7	43495878	rs3214631	C	CT	1646.73	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:99,84:0.46:183
chr7	43506059	rs2304329	A	G	2720.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:150,135:0.47:285
chr7	43540264	rs2304325	A	G	2928.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:172,154:0.47:326
chr7	43540513	rs78224160	A	G	590.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:18,22:0.55:40
chr7	43540887	rs17339479	A	C	1868.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:122,95:0.44:217
chr7	43546604	rs7810051	A	G	901.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:24,25:0.51:49
chr7	43546617	rs117689113	C	T	928.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:38,27:0.42:65
chr7	43548832	rs74368380	T	C	1081.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:53,53:0.50:106
chr7	43580595	rs2304322	T	C	616.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:20,24:0.55:44
chr7	43580904	rs3816072	A	G	1603.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:75,69:0.48:144
chr7	43581356	rs12534814	T	C	577.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:17,25:0.60:42
chr7	43594464	rs74792376	G	A	1113.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:42,46:0.52:88
chr7	43622806	rs10251937	T	C	7873.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:2,307:0.99:309
chr7	43622927	rs200156727	G	C	1282.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:87,67:0.44:154
chr7	43623123	rs2241738	C	G	540.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr7	43664280	rs1044141	A	G	7710.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr7	43664477	rs15866	T	C	1588.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr7	43684803	rs2302031	C	G	1795.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr7	43810764	rs699512	G	A	11216.77	.	AC=2;AF=1.00;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	1/1:0,412:1.00:412
chr7	43906544	rs9154	C	T	8013.77	.	AC=1;AF=0.500;AN=2;DB;DP=815;set=Intersection	GT:AD:AF:DP	0/1:413,388:0.48:801
chr7	43908394	rs73693907	T	C	549.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:21,23:0.52:44
chr7	43908866	rs2730608	C	T	2227.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.21;SOR=1.585;set=HC	GT:AD:AF:DP	1/1:0,96:1.00:96
chr7	43916727	rs2232108	T	G	22948.77	.	AC=2;AF=1.00;AN=2;DB;DP=830;set=Intersection	GT:AD:AF:DP	1/1:0,810:1.00:810
chr7	43917013	rs2232105	G	A	9165.77	.	AC=1;AF=0.500;AN=2;DB;DP=889;set=Intersection	GT:AD:AF:DP	0/1:446,435:0.49:881
chr7	43917274	rs2232103	A	G	19683.77	.	AC=2;AF=1.00;AN=2;DB;DP=761;set=Intersection	GT:AD:AF:DP	1/1:0,734:1.00:734
chr7	43945982	rs200939452	G	GC	566.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr7	43982341	rs2074728	G	C	1990.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:84,88:0.51:172
chr7	43982482	rs2074727	A	C	10979.77	.	AC=2;AF=1.00;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	1/1:0,396:1.00:396
chr7	44027348	rs2330943	A	G	7813.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr7	44076350	rs28378571	T	C	9551.77	.	AC=1;AF=0.500;AN=2;DB;DP=813;set=Intersection	GT:AD:AF:DP	0/1:374,438:0.54:812
chr7	44081323	rs3099757	C	G	1061.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:39,40:0.51:79
chr7	44081569	rs10254823	G	C	1811.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:54,79:0.59:133
chr7	44084210	rs17553434	A	G	441.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:24,18:0.43:42
chr7	44084292	rs4430012	C	G	1179.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:90,64:0.42:154
chr7	44084486	rs6944386	C	T	1356.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.894;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.68;ReadPosRankSum=-1.477;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:56,71:0.56:127
chr7	44084526	rs6964599	T	C	664.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:32,33:0.51:65
chr7	44089904	rs3812251	A	G	1628.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:113,80:0.41:193
chr7	44091343	rs17172569	A	G	783.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:8,27:0.77:35
chr7	44091576	rs76064691	G	A	5312.77	.	AC=1;AF=0.500;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	0/1:200,240:0.55:440
chr7	44097639	rs112571302	T	G	795.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:50,37:0.43:87
chr7	44097696	rs6968228	T	C	2937.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr7	44099664	rs11552797	T	C	2898.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:134,144:0.52:278
chr7	44102305	rs76119752	C	T	1140.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:38,48:0.56:86
chr7	44104805	rs112828964	C	T	5735.77	.	AC=1;AF=0.500;AN=2;DB;DP=617;set=Intersection	GT:AD:AF:DP	0/1:341,263:0.44:604
chr7	44105178	rs113274029	A	C	2001.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:82,81:0.50:163
chr7	44112996	rs28382660	TC	T	2054.73	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:67,67:0.50:134
chr7	44113656	rs3218661	T	C	2303.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:106,102:0.49:208
chr7	44120086	rs28382636	A	C	3527.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:146,167:0.53:313
chr7	44120548	rs3218659	G	A	1251.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:56,55:0.50:111
chr7	44145910	rs1558469	C	T	4087.77	.	AC=1;AF=0.500;AN=2;DB;DP=448;set=Intersection	GT:AD:AF:DP	0/1:247,196:0.44:443
chr7	44147485	rs2537188	C	A	12850.77	.	AC=2;AF=1.00;AN=2;DB;DP=480;set=Intersection	GT:AD:AF:DP	1/1:1,476:1.00:477
chr7	44147567	rs58863562	C	CG	10098.73	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr7	44148388	rs2075071	C	T	337.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:13,14:0.52:27
chr7	44148407	rs113000787	G	A	436.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:18,19:0.51:37
chr7	44148553	rs2595701	A	G	9357.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:2,358:0.99:360
chr7	44149374	rs11979310	T	A	5564.77	.	AC=1;AF=0.500;AN=2;DB;DP=518;set=Intersection	GT:AD:AF:DP	0/1:247,268:0.52:515
chr7	44151009	rs62460065	C	T	1081.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:39,41:0.51:80
chr7	44152119	rs11377645	A	AG	4548.73	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr7	44152549	rs41279612	G	A	6113.77	.	AC=1;AF=0.500;AN=2;DB;DP=576;set=Intersection	GT:AD:AF:DP	0/1:280,286:0.51:566
chr7	44153082	rs67670401	G	GC	3827.73	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr7	44153115	rs34515254	G	GC	2723.73	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:1,77:0.99:78
chr7	44153780	rs13928	A	G	5821.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.251;ClippingRankSum=0.000;DB;DP=592;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.78;ReadPosRankSum=3.436;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:273,267:0.49:540
chr7	44154374	rs3087361	C	A	755.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:46,32:0.41:78
chr7	44154865	rs5883885	A	AG	12081.73	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,326:1.00:326
chr7	44156146	rs3087367	G	A	967.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:42,40:0.49:82
chr7	44156186	rs3217968	A	C	466.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:20,17:0.46:37
chr7	44157770	rs34484835	G	GC	2455.73	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr7	44179223	rs6953355	A	T	3310.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:118,156:0.57:274
chr7	44180079	rs5883888	A	AG	8560.73	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr7	44185088	rs2908274	G	A	3076.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:82,128:0.61:210
chr7	44185758	rs2971680	C	G	845.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:20,34:0.63:54
chr7	44189321	rs2268574	A	G	3432.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:137,163:0.54:300
chr7	44190468	rs2268573	T	G	1207.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:20,42:0.68:62
chr7	44197583	rs2070971	G	T	1454.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:97,73:0.43:170
chr7	44243953	rs1476892	C	T	350.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr7	44247258	rs3824065	C	T	583.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:35,27:0.44:62
chr7	44250279	rs3837149	GCA	G	991.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:1,31:0.97:32
chr7	44250826	rs2072439	G	A	2643.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr7	44259554	rs149624128	T	TG	2498.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr7	44259561	rs138799733	G	GC	2504.73	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr7	44259685	rs77158048	G	A	3348.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:178,159:0.47:337
chr7	44259706	rs1065359	G	A	4083.77	.	AC=1;AF=0.500;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	0/1:172,193:0.53:365
chr7	44259871	rs1127065	C	T	4234.77	.	AC=1;AF=0.500;AN=2;DB;DP=472;set=Intersection	GT:AD:AF:DP	0/1:250,215:0.46:465
chr7	44266077	rs10951758	G	A	2835.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:86,133:0.61:219
chr7	44272314	rs5883896	G	GC	783.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr7	44442296	rs1473114	A	C	4422.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr7	44573966	rs217405	G	A	3619.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:129,156:0.55:285
chr7	44606098	rs6656	C	T	5376.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr7	44606217	rs217381	C	G	1273.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr7	44610490	rs217376	C	T	10145.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	1/1:0,379:1.00:379
chr7	44611077	rs217375	T	C	5947.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr7	44612347	rs217374	G	C	13238.77	.	AC=2;AF=1.00;AN=2;DB;DP=490;set=Intersection	GT:AD:AF:DP	1/1:0,484:1.00:484
chr7	44612454	rs217373	C	A	11506.77	.	AC=2;AF=1.00;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	1/1:0,417:1.00:417
chr7	44612753	rs217372	T	C	3018.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr7	44613103	rs217371	A	G	3358.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:1,109:0.99:110
chr7	44613611	rs11308115	CG	C	16263.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	1/1:0,398:1.00:398
chr7	44613613	.	G	T	4389.77	.	AC=1;AF=0.500;ALERT;AN=2;DP=403;MQ=60.05;set=Intersection	GT:AD:AF:DP	0/1:196,203:0.51:399
chr7	44619302	rs217361	T	C	8016.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr7	44620836	rs8580	C	A	4900.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr7	44663890	rs60190417	GT	G	134.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.509;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.54;ReadPosRankSum=2.596;SOR=0.520;set=HC	GT:AD:AF:DP	0/1:28,25:0.47:53
chr7	44685099	rs41280648	G	A	3819.77	.	AC=1;AF=0.500;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	0/1:217,189:0.47:406
chr7	44687129	.	C	T	4729.77	.	AC=1;AF=0.500;AN=2;DP=470;set=Intersection	GT:AD:AF:DP	0/1:240,222:0.48:462
chr7	44714926	.	C	A	2486.77	.	AC=1;AF=0.500;AN=2;DP=243;set=Intersection	GT:AD:AF:DP	0/1:121,120:0.50:241
chr7	44797726	rs76416468	T	C	1914.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:76,75:0.50:151
chr7	44802401	rs4720479	A	C	780.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:61,41:0.40:102
chr7	44839616	rs6463247	C	T	821.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:43,35:0.45:78
chr7	44839997	rs60958673	C	CT	508.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.665;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.147;QD=4.99;ReadPosRankSum=0.686;SOR=0.795;set=HC	GT:AD:AF:DP	0/1:57,45:0.44:102
chr7	44861619	rs1866600	G	C	3569.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:151,167:0.53:318
chr7	44862641	rs2012932	T	G	1881.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:124,97:0.44:221
chr7	44862808	rs114919982	T	C	5950.77	.	AC=1;AF=0.500;AN=2;DB;DP=513;set=Intersection	GT:AD:AF:DP	0/1:229,275:0.55:504
chr7	44869537	rs1297837	C	T	4348.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr7	44874966	rs41280660	C	T	120.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr7	44880684	rs138616116	CA	C	1846.73	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:82,63:0.43:145
chr7	44924627	rs6966024	A	C	28432.77	.	AC=2;AF=1.00;AN=2;DB;DP=1085;set=Intersection	GT:AD:AF:DP	1/1:3,1062:1.00:1065
chr7	45004063	rs7792760	T	C	10667.77	.	AC=2;AF=1.00;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	1/1:0,406:1.00:406
chr7	45005647	rs73104171	T	C	894.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:45,42:0.48:87
chr7	45009325	rs3735484	G	A	1080.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:83,54:0.39:137
chr7	45009341	rs3735485	A	G	4153.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr7	45009723	rs11555636	G	A	5708.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.509;ClippingRankSum=0.000;DB;DP=228;ExcessHet=3.0103;FS=3.335;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.72;ReadPosRankSum=1.464;SOR=0.475;set=HC	GT:AD:AF:DP	1/1:1,221:1.00:222
chr7	45010734	rs7789375	G	A	4263.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr7	45023503	rs12108	T	A	687.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:29,28:0.49:57
chr7	45067267	rs2289365	G	C	1918.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:84,90:0.52:174
chr7	45083243	rs145918895	TGTG	T	148.73	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:8,5:0.38:13
chr7	45103481	rs2304689	A	G	1347.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:89,70:0.44:159
chr7	45111482	rs1001349	A	T	5038.77	.	AC=1;AF=0.500;AN=2;DB;DP=533;set=Intersection	GT:AD:AF:DP	0/1:267,256:0.49:523
chr7	45111496	rs11976695	C	T	4881.77	.	AC=1;AF=0.500;AN=2;DB;DP=475;set=Intersection	GT:AD:AF:DP	0/1:233,233:0.50:466
chr7	45112471	rs11977608	C	A	648.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:15,26:0.63:41
chr7	45112902	rs10272243	T	C	1389.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr7	45113170	rs2289367	G	A	2195.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.691;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=1.104;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.98;ReadPosRankSum=1.791;SOR=0.802;set=HC	GT:AD:AF:DP	0/1:86,114:0.57:200
chr7	45119946	rs35199312	T	G	393.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:17,16:0.48:33
chr7	45120453	rs10264280	C	T	5355.77	.	AC=1;AF=0.500;AN=2;DB;DP=498;set=Intersection	GT:AD:AF:DP	0/1:250,245:0.49:495
chr7	45120704	rs2304692	C	T	7251.77	.	AC=1;AF=0.500;AN=2;DB;DP=849;set=Intersection	GT:AD:AF:DP	0/1:451,379:0.46:830
chr7	45122464	rs10243185	A	C	9966.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:1,345:1.00:346
chr7	45122723	rs61740895	G	A	5805.77	.	AC=1;AF=0.500;AN=2;DB;DP=601;set=Intersection	GT:AD:AF:DP	0/1:304,279:0.48:583
chr7	45123906	.	T	G	103	.	AC=1;AF=0.500;AN=2;BRF=0.48;FR=0.5000;HP=2;HapScore=2;MGOF=33;MMLQ=23;MQ=46.14;NF=7;NR=3;PP=103;QD=13.7771212547;SC=TGGGACACAATCGTGGCTGCA;SbPval=0.4;Source=Platypus;TC=31;TCF=24;TCR=7;TR=10;WE=45123914;WS=45123896;set=Platypus	GT:AD:AF:DP	1/0:21,10:0.32:31
chr7	45123925	.	C	T	497	.	AC=1;AF=0.500;AN=2;BRF=0.47;FR=0.5000;HP=3;HapScore=4;MGOF=26;MMLQ=24;MQ=50.71;NF=9;NR=4;PP=497;QD=40.9054778882;SC=CAGCCACAGGCTTTGGGGCTG;SbPval=0.64;Source=Platypus;TC=40;TCF=27;TCR=13;TR=13;WE=45123945;WS=45123915;set=Platypus	GT:AD:AF:DP	0/1:27,13:0.33:40
chr7	45123937	.	T	C	497	.	AC=1;AF=0.500;AN=2;BRF=0.47;FR=0.5000;HP=1;HapScore=4;MGOF=26;MMLQ=23;MQ=53.49;NF=12;NR=6;PP=497;QD=29.5428451415;SC=TTGGGGCTGATGAGAGATCTG;SbPval=0.5;Source=Platypus;TC=48;TCF=33;TCR=15;TR=18;WE=45123945;WS=45123915;set=Platypus	GT:AD:AF:DP	0/1:30,18:0.38:48
chr7	45124008	rs7777835	T	C	4727.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:2,166:0.99:168
chr7	45124286	rs3735494	A	G	4959.77	.	AC=1;AF=0.500;AN=2;DB;DP=495;set=Intersection	GT:AD:AF:DP	0/1:254,239:0.48:493
chr7	45124465	rs3735495	A	T	2675.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:144,130:0.47:274
chr7	45124708	rs13438759	C	T	3106.77	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:183,156:0.46:339
chr7	45125775	rs9791417	G	A	259.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:24,14:0.37:38
chr7	45139892	rs4553	G	A	2940.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:108,128:0.54:236
chr7	45142834	rs2289374	G	C	3095.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:2,117:0.98:119
chr7	45143090	rs59494919	G	GGACAGCC	2830.73	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:31,73:0.70:104
chr7	45143093	.	C	G	2481.77	.	AC=1;AF=0.500;AN=2;DP=95;set=Intersection	GT:AD:AF:DP	0/1:31,62:0.67:93
chr7	45143108	rs2119056	T	C	1759.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr7	45143892	rs6973982	A	G	4588.77	.	AC=1;AF=0.500;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	0/1:245,214:0.47:459
chr7	45144113	rs41280672	C	T	8453.77	.	AC=1;AF=0.500;AN=2;DB;DP=914;set=Intersection	GT:AD:AF:DP	0/1:483,424:0.47:907
chr7	45144403	rs2289375	C	T	477.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:30,20:0.40:50
chr7	45144494	rs2289376	T	C	3203.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr7	45144997	rs28393777	C	T	2551.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:97,112:0.54:209
chr7	45145670	rs7776981	G	A	1241.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:67,63:0.48:130
chr7	45148667	rs2304693	G	A	2997.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:162,143:0.47:305
chr7	45148773	rs2304694	C	A	2914.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:183,146:0.44:329
chr7	45216761	rs1294940	G	A	1684.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:73,71:0.49:144
chr7	45216785	rs17172483	G	T	2412.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:109,107:0.50:216
chr7	45225609	rs66534022	GGTGTATGT	G	1959.73	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:53,53:0.50:106
chr7	45225708	rs13222185	A	G	2377.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:150,123:0.45:273
chr7	45225788	rs11760627	C	A	3806.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:170,112:0.40:282
chr7	45225822	rs11760688	G	A	4856.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:165,126:0.43:291
chr7	45225838	rs11767359	AA	CC	4383.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;JOINED;set=Intersection	GT:AD:AF:DP	0/1:149,113:0.43:262
chr7	45225854	rs11767365	A	G	3719.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:122,98:0.45:220
chr7	45697295	rs2461131	C	G	3784.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.912;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=1.132;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.21;ReadPosRankSum=0.392;SOR=0.786;set=HC	GT:AD:AF:DP	0/1:101,96:0.49:197
chr7	45697295	.	CCT	GCC	2795	.	AC=1;AF=0.500;AN=2;BRF=0.4;FR=0.5000;HP=2;HapScore=2;MGOF=1;MMLQ=24;MQ=60.0;NF=49;NR=27;PP=2795;QD=20;SC=CAAGGTGGGCCCTAGCCCCAC;SbPval=0.56;Source=Platypus;TC=158;TCF=101;TCR=57;TR=76;WE=45697305;WS=45697285;set=Platypus	GT:AD:AF:DP	0/1:82,76:0.48:158
chr7	45697297	rs2471231	T	C	3784.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.449;ClippingRankSum=0.000;DB;DP=205;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.83;ReadPosRankSum=-0.150;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:101,100:0.50:201
chr7	45703971	rs1042009	G	A	1902.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:115,93:0.45:208
chr7	45743128	rs2247685	T	G	9000.77	.	AC=1;AF=0.500;AN=2;DB;DP=908;set=Intersection	GT:AD:AF:DP	0/1:458,445:0.49:903
chr7	45743403	rs2461114	G	A	6732.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr7	45744055	rs2272036	C	T	2305.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:63,108:0.63:171
chr7	45747933	rs2280497	A	G	1508.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:74,75:0.50:149
chr7	45750206	.	C	T	302.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.233;ClippingRankSum=0.000;DP=473;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.65;ReadPosRankSum=3.147;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:402,65:0.14:467
chr7	45753239	rs2293107	A	G	1231.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:51,59:0.54:110
chr7	45753324	rs2293106	G	A	4154.77	.	AC=1;AF=0.500;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	0/1:188,194:0.51:382
chr7	45767682	rs59412459	G	A	909.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:34,42:0.55:76
chr7	45767741	rs34262641	A	C	1520.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:69,74:0.52:143
chr7	45932669	rs4619	A	G	2956.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr7	45932794	rs1052652	T	C	264.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:5,12:0.71:17
chr7	45954679	rs34091405	AAC	A	1808.73	.	AC=1;AF=0.500;AN=2;DB;DP=99;MQ=60.33;set=Intersection	GT:AD:AF:DP	0/1:41,49:0.54:90
chr7	45954692	rs10255707	T	C	2070.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr7	45957055	rs2471551	G	C	1063.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:75,52:0.41:127
chr7	45957172	rs55719014	TA	T	257.73	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:6,13:0.68:19
chr7	45960323	rs6950868	C	A	265.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:11,13:0.54:24
chr7	45960645	rs2854746	G	C	493.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.247;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=4.245;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.89;ReadPosRankSum=0.808;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:73,28:0.28:101
chr7	46732428	rs700747	A	G	7945.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr7	46736733	rs71003346	GA	G	1362.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;MQ=60.21;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr7	47242645	rs4720584	A	G	671.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr7	47317510	rs3750163	G	A	3192.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.06;SOR=1.382;set=HC	GT:AD:AF:DP	1/1:0,118:1.00:118
chr7	47319723	rs4720590	C	T	1374.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr7	47319852	rs6971754	C	T	6201.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr7	47323456	rs3750164	A	G	11327.77	.	AC=2;AF=1.00;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	1/1:0,432:1.00:432
chr7	47331408	rs187595672	G	A	262.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:19,13:0.41:32
chr7	47332238	rs884824	A	G	1148.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr7	47342497	rs3750166	C	T	778.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.981;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=6.521;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.69;ReadPosRankSum=0.668;SOR=2.129;set=HC	GT:AD:AF:DP	0/1:32,21:0.40:53
chr7	47342500	rs3750167	C	G	868.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.220;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=8.951;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.98;ReadPosRankSum=-0.702;SOR=2.376;set=HC	GT:AD:AF:DP	0/1:33,25:0.43:58
chr7	47343083	rs3807589	C	T	2916.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:142,140:0.50:282
chr7	47408029	rs2255744	A	G	7076.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr7	47408974	rs1534136	T	A	13557.77	.	AC=2;AF=1.00;AN=2;DB;DP=496;set=Intersection	GT:AD:AF:DP	1/1:1,487:1.00:488
chr7	47436558	rs2177795	A	C	2567.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr7	47451295	rs834607	A	G	4693.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr7	47451572	rs17544073	C	T	1617.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr7	47481602	rs11763044	G	A	16030.77	.	AC=2;AF=1.00;AN=2;DB;DP=608;set=Intersection	GT:AD:AF:DP	1/1:2,600:1.00:602
chr7	47546375	rs334496	C	T	973.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr7	47546466	rs73095186	G	A	1568.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:51,75:0.60:126
chr7	47546547	rs334497	G	A	2917.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.807;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=0.850;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=17.90;ReadPosRankSum=-0.663;SOR=0.525;set=HC	GT:AD:AF:DP	1/1:23,140:0.86:163
chr7	47578772	rs334506	T	C	3477.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr7	47596534	rs6954946	G	A	355.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:24,16:0.40:40
chr7	47596775	rs615300	C	T	1024.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:80,55:0.41:135
chr7	47698685	rs12531737	A	G	2695.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:155,129:0.45:284
chr7	47835027	rs9719534	A	G	944.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:53,46:0.46:99
chr7	47840510	rs1466203	T	C	3512.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr7	47847679	rs1074780	G	A	931.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr7	47847751	rs3734931	G	A	1142.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:61,53:0.46:114
chr7	47853498	rs6463449	C	T	13410.77	.	AC=2;AF=1.00;AN=2;DB;DP=509;set=Intersection	GT:AD:AF:DP	1/1:0,504:1.00:504
chr7	47859239	rs3757379	C	A	1576.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.052;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=3.245;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.000;QD=11.10;ReadPosRankSum=1.650;SOR=0.456;set=HC	GT:AD:AF:DP	0/1:70,72:0.51:142
chr7	47860510	rs17659820	C	T	520.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:32,25:0.44:57
chr7	47860796	rs151245497	GT	G	2065.73	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:115,105:0.48:220
chr7	47868937	rs76381579	T	C	279.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:25,13:0.34:38
chr7	47869038	rs7788583	T	C	2519.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:109,121:0.53:230
chr7	47869751	rs6463451	C	T	1327.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:38,56:0.60:94
chr7	47872845	rs921634	A	G	2515.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:108,123:0.53:231
chr7	47884555	rs13237611	A	G	5840.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr7	47884829	rs1980279	C	A	883.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:23,35:0.60:58
chr7	47898222	rs34177211	T	TG	2220.73	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:88,82:0.48:170
chr7	47904737	rs1554495	G	A	425.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:11,18:0.62:29
chr7	47913412	rs72601625	C	T	700.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:35,30:0.46:65
chr7	47913579	rs1470859	T	C	13467.77	.	AC=2;AF=1.00;AN=2;DB;DP=520;set=Intersection	GT:AD:AF:DP	1/1:0,512:1.00:512
chr7	47913676	rs75976776	C	T	2293.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:128,108:0.46:236
chr7	47917087	rs72601626	C	T	2160.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:89,100:0.53:189
chr7	47947863	rs1474283	T	C	1109.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:60,58:0.49:118
chr7	47968927	rs2686817	C	A	6434.77	.	AC=1;AF=0.500;AN=2;DB;DP=700;set=Intersection	GT:AD:AF:DP	0/1:373,315:0.46:688
chr7	47970817	.	C	T	5908.77	.	AC=1;AF=0.500;AN=2;DP=503;set=Intersection	GT:AD:AF:DP	0/1:214,285:0.57:499
chr7	47971575	rs885337	A	G	2160.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:124,108:0.47:232
chr7	47976287	rs2708878	A	G	1018.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:50,49:0.49:99
chr7	47979922	rs2708913	A	G	2514.79	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:22,150:0.87:172
chr7	48004962	rs1056663	C	T	6396.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr7	48005122	rs2037483	G	A	8134.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr7	48009018	rs953595	AA	GT	5761.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr7	48010978	rs2708864	T	C	7398.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr7	48017965	rs2242477	C	T	2999.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr7	48017989	rs2242478	T	C	3987.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:2,131:0.98:133
chr7	48018455	rs2242479	T	A	4744.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:1,162:0.99:163
chr7	48019198	.	G	A	2770.77	.	AC=1;AF=0.500;AN=2;DP=255;set=Intersection	GT:AD:AF:DP	0/1:136,119:0.47:255
chr7	48035893	rs2708899	T	C	464.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr7	48045416	.	C	T	631	.	AC=1;AF=0.500;AN=2;BRF=0.3;FR=0.5000;HP=1;HapScore=2;MGOF=10;MMLQ=27;MQ=59.84;NF=32;NR=2;PP=631;QD=19.5815062514;SC=ACTATTTCTACTCTCTTCTTT;SbPval=0.73;Source=Platypus;TC=65;TCF=60;TCR=5;TR=34;WE=48045424;WS=48045406;set=Platypus	GT:AD:AF:DP	0/1:31,34:0.52:65
chr7	48046714	rs1574242	G	A	1067.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:44,48:0.52:92
chr7	48058152	rs1915963	T	C	306.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:10,15:0.60:25
chr7	48068258	rs7357251	G	C	447.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:18,18:0.50:36
chr7	48074984	rs1915971	C	T	335.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:13,16:0.55:29
chr7	48075030	rs1915972	C	G	510.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:21,25:0.54:46
chr7	48081095	rs10951942	G	T	2239.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:121,107:0.47:228
chr7	48083339	rs6978838	A	T	688.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:29,27:0.48:56
chr7	48086077	rs2708912	C	T	6090.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr7	48086161	rs10233232	T	C	11967.77	.	AC=2;AF=1.00;AN=2;DB;DP=465;set=Intersection	GT:AD:AF:DP	1/1:0,460:1.00:460
chr7	48086269	rs145223213	G	C	1302.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:123,64:0.34:187
chr7	48089394	rs909059	T	C	10115.77	.	AC=2;AF=1.00;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	1/1:0,371:1.00:371
chr7	48089542	rs2686788	T	C	9471.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:0,341:1.00:341
chr7	48089571	rs2708890	C	A	6494.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr7	48092486	rs2686791	T	C	6023.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr7	48092601	rs17547209	C	T	9632.77	.	AC=2;AF=1.00;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	1/1:4,359:0.99:363
chr7	48092644	rs17629333	C	T	9182.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:4,352:0.99:356
chr7	48092847	rs2686792	C	A	887.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr7	48100016	rs7790252	T	C	322.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr7	48211301	rs141832114	C	T	572.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr7	48232530	.	A	AT	556.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.474;ClippingRankSum=0.000;DP=117;ExcessHet=3.0103;FS=4.009;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.166;QD=5.11;ReadPosRankSum=1.519;SOR=1.118;set=HC	GT:AD:AF:DP	0/1:63,46:0.42:109
chr7	48237802	rs2188	C	T	1728.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:84,80:0.49:164
chr7	48260869	rs10252745	T	G	787.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:39,40:0.51:79
chr7	48269679	rs60553397	G	C	2236.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr7	48273869	rs7357106	T	C	1948.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr7	48285405	rs55695801	A	T	2876.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:94,134:0.59:228
chr7	48313510	rs17547830	A	G	4220.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:1,161:0.99:162
chr7	48313854	rs190625179	G	A	1717.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:80,77:0.49:157
chr7	48314798	rs13233225	G	T	16854.77	.	AC=2;AF=1.00;AN=2;DB;DP=635;set=Intersection	GT:AD:AF:DP	1/1:0,623:1.00:623
chr7	48317683	rs10246853	A	T	797.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.111;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=4.728;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.45;ReadPosRankSum=0.995;SOR=1.444;set=HC	GT:AD:AF:DP	0/1:5,34:0.87:39
chr7	48317683	.	AT	TT	710	.	AC=1;AF=0.500;AN=2;BRF=0.41;FR=0.4986,0.5014;HP=4;HapScore=1;MGOF=4;MMLQ=28;MQ=60.0;NF=2,23;NR=4,13;PP=12,710;QD=3.5;SC=ATATATATATATTTACAGTTT;SbPval=0.83;Source=Platypus;TC=31;TCF=14;TCR=17;TR=6,36;WE=48317691;WS=48317673;set=Platypus	GT:AD:AF:DP	0/1:3,36:0.92:39
chr7	48317683	.	AT	ATTT	710	.	AC=1;AF=0.500;AN=2;BRF=0.41;FR=0.4986,0.5014;HP=4;HapScore=1;MGOF=4;MMLQ=28;MQ=60.0;NF=2,23;NR=4,13;PP=12,710;QD=3.5;SC=ATATATATATATTTACAGTTT;SbPval=0.83;Source=Platypus;TC=31;TCF=14;TCR=17;TR=6,36;WE=48317691;WS=48317673;set=Platypus	GT:AD:AF:DP	0/1:25,6:0.19:31
chr7	48352570	rs56322731	G	A	905.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:39,40:0.51:79
chr7	48415892	rs2163938	A	G	495.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:35,22:0.39:57
chr7	48443570	rs6978753	G	A	2084.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:132,103:0.44:235
chr7	48450097	rs62447267	C	T	5728.77	.	AC=1;AF=0.500;AN=2;DB;DP=568;set=Intersection	GT:AD:AF:DP	0/1:288,277:0.49:565
chr7	48450157	rs17548783	T	C	8717.77	.	AC=1;AF=0.500;AN=2;DB;DP=899;set=Intersection	GT:AD:AF:DP	0/1:459,435:0.49:894
chr7	48450289	rs62447268	C	G	2947.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:147,128:0.47:275
chr7	48451939	rs1865195	T	C	1979.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:100,91:0.48:191
chr7	48452200	rs7789493	G	A	2026.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.904;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=2.234;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.66;ReadPosRankSum=-0.095;SOR=0.872;set=HC	GT:AD:AF:DP	0/1:131,103:0.44:234
chr7	48467355	rs13233421	T	C	2253.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:140,112:0.44:252
chr7	48467581	rs13243091	T	C	1633.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:102,86:0.46:188
chr7	48467634	rs34541457	T	C	792.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:46,33:0.42:79
chr7	48467653	rs34529024	GAA	G	245.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.453;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.68;ReadPosRankSum=-3.524;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:20,12:0.38:32
chr7	48506416	rs4917151	G	C	620.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr7	48511297	rs7810026	T	C	1392.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:66,60:0.48:126
chr7	48520780	rs4472462	A	T	2965.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:158,137:0.46:295
chr7	48520799	rs139307256	G	GA	2286.73	.	AC=1;AF=0.500;AN=2;DB;DP=213;MQ=60.05;set=Intersection	GT:AD:AF:DP	0/1:92,104:0.53:196
chr7	48522845	rs1918584	CA	GG	3071.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr7	48528923	rs73694648	G	C	5739.77	.	AC=1;AF=0.500;AN=2;DB;DP=542;set=Intersection	GT:AD:AF:DP	0/1:266,273:0.51:539
chr7	48545879	rs6583447	A	T	794.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:49,37:0.43:86
chr7	48545976	rs6583448	A	G	7687.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr7	48563752	rs11185607	A	C	783.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:36,34:0.49:70
chr7	48684185	rs150970044	CTT	C	979.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.692;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=0.519;QD=19.99;ReadPosRankSum=0.763;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:7,42:0.86:49
chr7	48886140	rs62454384	T	C	3655.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.46;QD=29.01;SOR=1.536;set=HC	GT:AD:AF:DP	1/1:0,126:1.00:126
chr7	48886193	rs3814470	G	A	1688.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.356;ClippingRankSum=0.000;DB;DP=221;ExcessHet=3.0103;FS=0.507;MLEAC=1;MLEAF=0.500;MQ=47.80;MQRankSum=-0.861;QD=7.64;ReadPosRankSum=-0.169;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:137,84:0.38:221
chr7	48886383	rs146940015	G	T	391.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.78;QD=30.14;SOR=5.283;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr7	48886487	rs62454385	T	C	2116.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.39;QD=26.46;SOR=1.096;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr7	48886648	rs71537796	G	A	2724.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.76;QD=30.62;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,89:1.00:89
chr7	48886746	rs4320498	C	T	9306.77	.	AC=2;AF=1.00;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chr7	48886783	rs62454386	G	A	4371.77	.	AC=1;AF=0.500;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	0/1:218,218:0.50:436
chr7	48887548	rs4404869	G	C	6685.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:1,250:1.00:251
chr7	48964172	rs6945680	G	C	949.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:40,42:0.51:82
chr7	48964209	rs58317831	TG	T	1891.73	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:61,65:0.52:126
chr7	48964255	rs6968293	A	C	2119.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:93,97:0.51:190
chr7	48964322	rs11767646	G	T	4037.77	.	AC=1;AF=0.500;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	0/1:174,182:0.51:356
chr7	48964751	rs61731347	G	A	5955.77	.	AC=1;AF=0.500;AN=2;DB;DP=607;set=Intersection	GT:AD:AF:DP	0/1:304,293:0.49:597
chr7	48965000	rs10259692	G	A	4597.77	.	AC=1;AF=0.500;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	0/1:255,206:0.45:461
chr7	48965141	rs62456439	A	G	132.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.611;ClippingRankSum=0.000;DB;DP=307;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=45.69;MQRankSum=-1.644;QD=0.44;ReadPosRankSum=-2.189;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:262,39:0.13:301
chr7	48965427	rs145470654	A	G	1176.77	.	AC=1;AF=0.500;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	0/1:342,78:0.19:420
chr7	49815344	.	A	G	1597.77	.	AC=1;AF=0.500;AN=2;DP=134;set=Intersection	GT:AD:AF:DP	0/1:59,73:0.55:132
chr7	49815390	rs769604	C	G	2636.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:97,116:0.54:213
chr7	49951519	rs55947532	G	GCACACACACACACA	504.73	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:20,16:0.44:36
chr7	49951544	rs7792519	T	C	219.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:34,12:0.26:46
chr7	50023122	rs988392	C	T	802.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:41,37:0.47:78
chr7	50070921	rs1351691	C	G	121.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:3,5:0.62:8
chr7	50198626	rs4917120	T	C	9019.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:0,337:1.00:337
chr7	50435617	rs11766800	A	T	322.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:16,21:0.57:37
chr7	50435777	rs12669559	T	G	2682.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:173,141:0.45:314
chr7	50436033	rs10899750	A	G	6830.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr7	50467941	rs61731356	C	T	8896.77	.	AC=1;AF=0.500;AN=2;DB;DP=855;set=Intersection	GT:AD:AF:DP	0/1:413,427:0.51:840
chr7	50468334	rs72645704	C	T	4313.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:163,193:0.54:356
chr7	50512857	rs10230307	C	T	1355.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr7	50512929	rs10230343	C	A	3057.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr7	50537677	rs11378977	C	CA	317.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.084;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=0.000;QD=3.92;ReadPosRankSum=-0.025;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:49,32:0.40:81
chr7	50537983	rs3757472	A	C	1962.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:89,85:0.49:174
chr7	50544269	rs5884156	AG	A	4089.73	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr7	50544314	rs4490786	C	T	1703.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:107,77:0.42:184
chr7	50545191	rs4992502	C	A	1818.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:88,84:0.49:172
chr7	50547584	rs11575457	A	C	502.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:45,28:0.38:73
chr7	50547661	rs11575456	AGCCCT	A	628.73	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:16,17:0.52:33
chr7	50560832	rs58085392	G	T	878.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:46,39:0.46:85
chr7	50566671	rs3807562	G	A	215.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:25,12:0.32:37
chr7	50566762	rs2876829	C	T	3413.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr7	50571779	rs11575375	G	A	1070.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:77,55:0.42:132
chr7	50611735	rs6264	T	C	5477.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr7	50663299	.	TAC	T	233.73	.	AC=1;AF=0.500;AN=2;DP=89;set=Intersection	GT:AD:AF:DP	0/1:24,12:0.33:36
chr7	50671481	rs7456867	C	G	591.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:26,22:0.46:48
chr7	50672907	rs4947709	T	C	778.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:49,33:0.40:82
chr7	50673029	rs4947710	T	C	3303.77	.	AC=1;AF=0.500;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	0/1:260,178:0.41:438
chr7	50685625	rs2240498	A	C	898.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.193;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=3.933;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.17;ReadPosRankSum=0.733;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:68,42:0.38:110
chr7	50694457	rs1468450	A	G	997.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:42,46:0.52:88
chr7	50737469	rs200175899	G	C	2159.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:103,103:0.50:206
chr7	50742118	rs2715128	A	G	469.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:14,18:0.56:32
chr7	50742180	rs1800504	C	T	966.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:37,45:0.55:82
chr7	50800100	.	G	GA	1751.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.147;ClippingRankSum=0.000;DP=343;ExcessHet=3.0103;FS=1.694;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=2.412;QD=6.23;ReadPosRankSum=-0.516;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:142,139:0.49:281
chr7	50800169	rs2108350	T	C	4139.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr7	51085127	rs3214180	A	AT	5521.73	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr7	51093013	rs2240087	A	T	3210.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr7	51094269	rs61737954	G	A	1322.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:80,70:0.47:150
chr7	51096974	rs2240090	C	T	4113.77	.	AC=1;AF=0.500;AN=2;DB;DP=468;set=Intersection	GT:AD:AF:DP	0/1:263,204:0.44:467
chr7	51097063	rs10230120	T	G	8613.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chr7	51098567	rs142060269	GTCT	G	7318.73	.	AC=1;AF=0.500;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	0/1:184,196:0.52:380
chr7	51153024	rs59837144	GTACAATCAAAGTACTTTGTACCTATGAAGT	GACAATCAAAGTACTTTGTACCTATGAAGT,G	3502.73	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=196;set=Intersection	GT:AF:DP	0/1:0.50:182
chr7	51153027	.	CAATCAAAGTACTTTGTACCTATGAAGTACAAAGA	C	3476.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.886;ClippingRankSum=0.000;DP=184;ExcessHet=3.0103;FS=6.458;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.00;ReadPosRankSum=1.689;SOR=1.166;set=HC	GT:AD:AF:DP	0/1:93,90:0.49:183
chr7	51153056	.	CAAAGA	C	2943	.	AC=1;AF=0.500;AN=2;BRF=0.48;FR=0.5000;HP=4;HapScore=1;MGOF=3;MMLQ=28;MQ=56.56;NF=6;NR=34;PP=2943;QD=20;SC=CTATGAAGTACAAAGAAGGCA;SbPval=0.47;Source=Platypus;TC=66;TCF=9;TCR=57;TR=40;WE=51153069;WS=51153014;set=Platypus	GT:AD:AF:DP	1/0:26,40:0.61:66
chr7	51287410	rs73120437	C	T	4156.77	.	AC=1;AF=0.500;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	0/1:158,197:0.55:355
chr7	51287470	rs801142	A	G	10051.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	1/1:0,383:1.00:383
chr7	53103371	rs72598684	G	T	2398.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:109,107:0.50:216
chr7	53103382	rs72598685	G	T	2817.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:140,128:0.48:268
chr7	53103554	rs11238247	C	G	5831.77	.	AC=1;AF=0.500;AN=2;DB;DP=561;set=Intersection	GT:AD:AF:DP	0/1:268,275:0.51:543
chr7	53103571	rs11238248	G	A	4958.77	.	AC=1;AF=0.500;AN=2;DB;DP=503;set=Intersection	GT:AD:AF:DP	0/1:244,242:0.50:486
chr7	53103673	rs1184320	C	A	4188.77	.	AC=1;AF=0.500;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	0/1:159,199:0.56:358
chr7	53103946	rs12113170	G	C	7523.77	.	AC=1;AF=0.500;AN=2;DB;DP=715;set=Intersection	GT:AD:AF:DP	0/1:352,355:0.50:707
chr7	53104078	rs72598686	G	A	7174.77	.	AC=1;AF=0.500;AN=2;DB;DP=777;set=Intersection	GT:AD:AF:DP	0/1:423,336:0.44:759
chr7	54614585	rs657449	A	G	3110.77	.	AC=1;AF=0.500;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	0/1:173,149:0.46:322
chr7	54614698	rs11432820	C	CG	14725.73	.	AC=2;AF=1.00;AN=2;DB;DP=613;set=Intersection	GT:AD:AF:DP	1/1:7,567:0.99:574
chr7	54618010	rs2293343	C	T	1845.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:88,77:0.47:165
chr7	54621526	rs662136	T	C	3591.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:156,162:0.51:318
chr7	54820186	rs6952793	A	G	1568.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr7	55002836	rs35747839	G	GA	6840.73	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr7	55002841	rs2330916	T	G	7110.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr7	55004546	rs2005868	C	T	2636.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;MQ=59.97;set=Intersection	GT:AD:AF:DP	0/1:134,126:0.48:260
chr7	55005796	rs13437987	G	A	3279.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:115,158:0.58:273
chr7	55086780	rs712830	A	C	1808.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr7	55220174	rs115681740	G	A	4197.77	.	AC=1;AF=0.500;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	0/1:170,192:0.53:362
chr7	55221655	rs4947986	G	A	3170.77	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:169,147:0.47:316
chr7	55228053	rs1558544	A	T	1034.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:42,42:0.50:84
chr7	55229255	rs2227983	G	A	3964.77	.	AC=1;AF=0.500;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	0/1:165,189:0.53:354
chr7	55233080	rs115350205	C	T	4032.77	.	AC=1;AF=0.500;AN=2;DB;DP=469;set=Intersection	GT:AD:AF:DP	0/1:252,197:0.44:449
chr7	55233863	rs9649769	A	C	466.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:7,18:0.72:25
chr7	55238087	rs10258429	C	T	3319.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:154,157:0.50:311
chr7	55238227	rs10258568	C	T	2011.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:102,100:0.50:202
chr7	55238268	rs10228436	G	A	1252.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:58,58:0.50:116
chr7	55238874	rs2227984	T	A	3558.77	.	AC=1;AF=0.500;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	0/1:200,176:0.47:376
chr7	55240461	rs2241055	G	C	1957.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:76,87:0.53:163
chr7	55242609	rs2017000	A	G	880.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:39,38:0.49:77
chr7	55249063	rs1050171	G	A	5115.77	.	AC=1;AF=0.500;AN=2;DB;DP=512;set=Intersection	GT:AD:AF:DP	0/1:253,250:0.50:503
chr7	55266417	rs1140475	T	C	15849.77	.	AC=2;AF=1.00;AN=2;DB;DP=616;set=Intersection	GT:AD:AF:DP	1/1:2,609:1.00:611
chr7	55268916	rs2293347	C	T	2276.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:159,117:0.42:276
chr7	55272826	rs2692456	G	A	1639.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr7	55433880	rs2272262	G	C	5306.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.483;ClippingRankSum=0.000;DB;DP=380;ExcessHet=3.0103;FS=4.750;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.08;ReadPosRankSum=0.499;SOR=0.934;set=HC	GT:AD:AF:DP	0/1:231,146:0.39:377
chr7	55433884	rs2272263	A	C	5307.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.458;ClippingRankSum=0.000;DB;DP=369;ExcessHet=3.0103;FS=4.138;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.46;ReadPosRankSum=0.082;SOR=0.900;set=HC	GT:AD:AF:DP	0/1:224,143:0.39:367
chr7	55466002	rs6973684	T	C	412.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:30,20:0.40:50
chr7	55466017	rs80198899	T	G	967.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:34,37:0.52:71
chr7	55467923	rs2272226	G	C	224.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:21,11:0.34:32
chr7	55468773	rs815929	C	A	1018.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr7	55499058	rs815988	A	G	2850.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr7	55540707	rs815957	G	A	4651.77	.	AC=1;AF=0.500;AN=2;DB;DP=488;set=Intersection	GT:AD:AF:DP	0/1:255,230:0.47:485
chr7	55540791	rs712819	G	C	9131.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:0,333:1.00:333
chr7	55560207	rs815951	C	T	3786.77	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:160,176:0.52:336
chr7	55565247	rs139072999	TGGG	T	1041.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=35.92;SOR=5.549;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr7	55588604	.	G	A	883.77	.	AC=1;AF=0.500;AN=2;DP=91;set=Intersection	GT:AD:AF:DP	0/1:51,39:0.43:90
chr7	55750390	rs11238374	A	G	10520.77	.	AC=2;AF=1.00;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	1/1:0,398:1.00:398
chr7	55758965	rs147310248	C	A	2245.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:101,96:0.49:197
chr7	55774755	rs112151645	A	G	574.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:20,21:0.51:41
chr7	55774888	rs12666519	C	T	3369.77	.	AC=1;AF=0.500;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	0/1:204,162:0.44:366
chr7	55774975	rs144109770	G	T	4964.77	.	AC=1;AF=0.500;AN=2;DB;DP=522;set=Intersection	GT:AD:AF:DP	0/1:275,245:0.47:520
chr7	55779103	rs28695422	C	T	2364.77	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:212,130:0.38:342
chr7	55779220	rs12536949	A	G	3301.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.66;QD=30.29;SOR=1.743;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr7	55780176	rs10267547	T	C	6571.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr7	55780845	rs77949648	T	C	7012.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.971;ClippingRankSum=0.000;DB;DP=268;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.10;MQRankSum=-2.537;QD=26.27;ReadPosRankSum=-0.947;SOR=0.779;set=HC	GT:AD:AF:DP	1/1:2,265:0.99:267
chr7	55832361	rs28670923	T	C	585.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:13,22:0.63:35
chr7	55832429	rs146909187	G	GT	335.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.871;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.39;MQRankSum=-1.356;QD=4.09;ReadPosRankSum=-0.021;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:52,30:0.37:82
chr7	55832454	rs4388410	A	G	1547.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.444;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.65;MQRankSum=0.934;QD=10.05;ReadPosRankSum=1.462;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:77,77:0.50:154
chr7	55832480	rs4577914	T	C	1902.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:115,113:0.50:228
chr7	55912185	rs4294144	C	T	1160.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:53,55:0.51:108
chr7	55991144	rs2135116	A	G	705.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:31,30:0.49:61
chr7	55991292	rs2174460	G	A	4022.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.25;SOR=1.028;set=HC	GT:AD:AF:DP	1/1:0,108:1.00:108
chr7	55991292	.	GT	AC,AT	559	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.44;FR=0.5000,0.5000;HP=2;HapScore=2;MGOF=3;MMLQ=24;MQ=60.0;NF=23,43;NR=14,30;PP=527,559;QD=15.6883209422;SC=TGTTACTCCTGTGAATAGGGT;SbPval=0.71;Source=Platypus;TC=74;TCF=43;TCR=31;TR=37,73;WE=55991301;WS=55991282;set=Platypus	GT:AF:DP	0/1:0.50:74
chr7	55991293	rs2174459	T	C	1335.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.229;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.730;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.48;ReadPosRankSum=1.967;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:44,63:0.59:107
chr7	56007576	rs34016595	C	T	6592.77	.	AC=1;AF=0.500;AN=2;DB;DP=597;MQ=59.99;set=Intersection	GT:AD:AF:DP	0/1:280,310:0.53:590
chr7	56022981	rs15892	T	C	1490.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr7	56047572	rs60160896	C	T	2913.77	.	AC=1;AF=0.500;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:178,140:0.44:318
chr7	56049720	rs6947109	G	A	263.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:13,13:0.50:26
chr7	56049990	rs66485869	A	G	256.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.183;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.76;ReadPosRankSum=-0.160;SOR=0.498;set=HC	GT:AD:AF:DP	0/1:23,15:0.39:38
chr7	56051672	.	T	TTATATGTATA	1877	.	AC=1;AF=0.500;AN=2;BRF=0.17;FR=0.5000;HP=1;HapScore=2;MGOF=5;MMLQ=28;MQ=60.0;NF=0;NR=4;PP=1877;QD=474.5;SC=ATGTCTAGCATTATATGTATA;SbPval=1.0;Source=Platypus;TC=24;TCF=0;TCR=24;TR=4;WE=56051680;WS=56051662;set=Platypus	GT:AD:AF:DP	1/0:20,4:0.17:24
chr7	56059591	rs10435504	G	C	6176.77	.	AC=1;AF=0.500;AN=2;DB;DP=590;set=Intersection	GT:AD:AF:DP	0/1:275,297:0.52:572
chr7	56087206	rs75045388	A	T	267.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.348;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=3.420;MLEAC=1;MLEAF=0.500;MQ=59.76;MQRankSum=-2.814;QD=2.46;ReadPosRankSum=-2.075;SOR=1.284;set=HC	GT:AD:AF:DP	0/1:97,12:0.11:109
chr7	56087215	.	G	C	351.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.177;ClippingRankSum=0.000;DP=124;ExcessHet=3.0103;FS=4.497;MLEAC=1;MLEAF=0.500;MQ=59.79;MQRankSum=-2.473;QD=2.86;ReadPosRankSum=-2.529;SOR=1.426;set=HC	GT:AD:AF:DP	0/1:106,17:0.14:123
chr7	56087219	.	A	C	453.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.086;ClippingRankSum=0.000;DP=132;ExcessHet=3.0103;FS=2.509;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=-2.406;QD=3.46;ReadPosRankSum=-2.520;SOR=1.132;set=HC	GT:AD:AF:DP	0/1:112,19:0.15:131
chr7	56087232	.	T	C	641.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.415;ClippingRankSum=0.000;DP=176;ExcessHet=3.0103;FS=5.977;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=-2.370;QD=3.69;ReadPosRankSum=-1.115;SOR=1.335;set=HC	GT:AD:AF:DP	0/1:148,26:0.15:174
chr7	56087233	.	G	A	635.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.662;ClippingRankSum=0.000;DP=180;ExcessHet=3.0103;FS=4.304;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=-2.349;QD=3.57;ReadPosRankSum=-1.146;SOR=1.161;set=HC	GT:AD:AF:DP	0/1:151,27:0.15:178
chr7	56087240	.	T	C	654.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.367;ClippingRankSum=0.000;DP=197;ExcessHet=3.0103;FS=7.110;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=-2.435;QD=3.34;ReadPosRankSum=0.079;SOR=1.477;set=HC	GT:AD:AF:DP	0/1:168,28:0.14:196
chr7	56087241	.	G	A	654.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.097;ClippingRankSum=0.000;DP=201;ExcessHet=3.0103;FS=5.366;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=-2.414;QD=3.27;ReadPosRankSum=-0.010;SOR=1.275;set=HC	GT:AD:AF:DP	0/1:171,29:0.14:200
chr7	56087278	rs199535022	C	A	1126.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.040;ClippingRankSum=0.000;DB;DP=321;ExcessHet=3.0103;FS=1.275;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-2.432;QD=3.52;ReadPosRankSum=2.661;SOR=0.848;set=HC	GT:AD:AF:DP	0/1:274,46:0.14:320
chr7	56087280	rs200789478	G	C	1198.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.451;ClippingRankSum=0.000;DB;DP=332;ExcessHet=3.0103;FS=1.244;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-2.420;QD=3.62;ReadPosRankSum=2.459;SOR=0.829;set=HC	GT:AD:AF:DP	0/1:283,48:0.15:331
chr7	56087283	rs201406771	T	C	1272.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.681;ClippingRankSum=0.000;DB;DP=338;ExcessHet=3.0103;FS=1.215;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-2.387;QD=3.78;ReadPosRankSum=2.099;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:287,50:0.15:337
chr7	56087291	rs139106189	AC	A	1371.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.657;ClippingRankSum=0.000;DB;DP=359;ExcessHet=3.0103;FS=3.391;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=-1.369;QD=3.83;ReadPosRankSum=1.437;SOR=0.939;set=HC	GT:AD:AF:DP	0/1:304,54:0.15:358
chr7	56087300	rs75395437	C	T	1683.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.188;ClippingRankSum=0.000;DB;DP=388;ExcessHet=3.0103;FS=6.861;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-2.291;QD=4.36;ReadPosRankSum=0.293;SOR=1.137;set=HC	GT:AD:AF:DP	0/1:324,62:0.16:386
chr7	56087319	rs73343757	T	G	1783.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.960;ClippingRankSum=0.000;DB;DP=435;ExcessHet=3.0103;FS=3.471;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-2.891;QD=4.13;ReadPosRankSum=-1.402;SOR=1.063;set=HC	GT:AD:AF:DP	0/1:355,77:0.18:432
chr7	56087364	rs201644817	GA	TG	2706.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.309;ClippingRankSum=0.000;DB;DP=454;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=-2.007;QD=6.00;ReadPosRankSum=0.867;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:361,90:0.20:451
chr7	56087374	rs200442078	C	T	2793.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.072;ClippingRankSum=0.000;DB;DP=435;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=-1.956;QD=6.45;ReadPosRankSum=1.619;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:343,90:0.21:433
chr7	56087379	rs201935398	T	C	2742.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.321;ClippingRankSum=0.000;DB;DP=414;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=-1.898;QD=6.64;ReadPosRankSum=1.772;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:323,90:0.22:413
chr7	56087399	rs79321413	G	A	2562.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.603;ClippingRankSum=0.000;DB;DP=361;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-1.842;QD=7.14;ReadPosRankSum=2.023;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:277,82:0.23:359
chr7	56087409	rs74874687	G	A	2627.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.466;ClippingRankSum=0.000;DB;DP=330;ExcessHet=3.0103;FS=0.474;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=-1.780;QD=8.01;ReadPosRankSum=2.164;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:249,79:0.24:328
chr7	56087423	rs79451216	G	A	2264.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.149;ClippingRankSum=0.000;DB;DP=285;ExcessHet=3.0103;FS=0.520;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=-2.399;QD=8.00;ReadPosRankSum=2.116;SOR=0.621;set=HC	GT:AD:AF:DP	0/1:215,68:0.24:283
chr7	56087465	rs77534057	G	A	1170.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.375;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.59;MQRankSum=-2.782;QD=8.02;ReadPosRankSum=-0.467;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:105,41:0.28:146
chr7	56087474	rs77874436	A	G	964.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.109;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=2.150;MLEAC=1;MLEAF=0.500;MQ=59.47;MQRankSum=-2.962;QD=8.54;ReadPosRankSum=0.027;SOR=0.953;set=HC	GT:AD:AF:DP	0/1:84,29:0.26:113
chr7	56087504	rs76724548	G	A	565.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.290;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=3.607;MLEAC=1;MLEAF=0.500;MQ=58.74;MQRankSum=-3.931;QD=7.54;ReadPosRankSum=-2.131;SOR=1.593;set=HC	GT:AD:AF:DP	0/1:56,19:0.25:75
chr7	56087508	rs75713723	G	A	517.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.031;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=3.651;MLEAC=1;MLEAF=0.500;MQ=58.62;MQRankSum=-3.977;QD=7.61;ReadPosRankSum=-2.399;SOR=1.591;set=HC	GT:AD:AF:DP	0/1:51,17:0.25:68
chr7	56087533	.	C	A	127.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.959;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;FS=2.401;MLEAC=1;MLEAF=0.500;MQ=57.86;MQRankSum=-5.363;QD=2.90;ReadPosRankSum=2.026;SOR=1.661;set=HC	GT:AD:AF:DP	0/1:37,7:0.16:44
chr7	56088780	rs75497420	G	A	5131.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.035;ClippingRankSum=0.000;DB;DP=1046;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=-2.094;QD=5.25;ReadPosRankSum=1.469;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:796,181:0.19:977
chr7	56088786	rs202027697	A	T	5288.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.072;ClippingRankSum=0.000;DB;DP=1059;ExcessHet=3.0103;FS=0.684;MLEAC=1;MLEAF=0.500;MQ=59.78;MQRankSum=-2.086;QD=5.36;ReadPosRankSum=3.323;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:803,184:0.19:987
chr7	56088789	rs199851385	G	A	5368.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.607;ClippingRankSum=0.000;DB;DP=1055;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.77;MQRankSum=-2.910;QD=5.46;ReadPosRankSum=3.660;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:796,188:0.19:984
chr7	56088811	rs78599516	T	C	2888.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.666;ClippingRankSum=0.000;DB;DP=999;ExcessHet=3.0103;FS=0.656;MLEAC=1;MLEAF=0.500;MQ=59.69;MQRankSum=-2.782;QD=3.09;ReadPosRankSum=5.974;SOR=0.617;set=HC	GT:AD:AF:DP	0/1:743,192:0.21:935
chr7	56088825	rs74445297	T	A	3020.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.731;ClippingRankSum=0.000;DB;DP=908;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.66;MQRankSum=-4.145;QD=3.52;ReadPosRankSum=3.712;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:664,194:0.23:858
chr7	56088902	rs77329757	C	T	2635.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.806;ClippingRankSum=0.000;DB;DP=376;ExcessHet=3.0103;FS=3.099;MLEAC=1;MLEAF=0.500;MQ=59.16;MQRankSum=-4.005;QD=7.42;ReadPosRankSum=1.688;SOR=0.922;set=HC	GT:AD:AF:DP	0/1:270,85:0.24:355
chr7	56088907	rs201445503	GC	CT	2590.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.897;ClippingRankSum=0.000;DB;DP=340;ExcessHet=3.0103;FS=2.562;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.07;MQRankSum=-3.952;QD=8.12;ReadPosRankSum=1.665;SOR=0.889;set=HC	GT:AD:AF:DP	0/1:241,78:0.24:319
chr7	56088928	rs200942360	C	T	1586.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.289;ClippingRankSum=0.000;DB;DP=215;ExcessHet=3.0103;FS=2.209;MLEAC=1;MLEAF=0.500;MQ=58.87;MQRankSum=-3.405;QD=7.89;ReadPosRankSum=2.256;SOR=1.015;set=HC	GT:AD:AF:DP	0/1:149,52:0.26:201
chr7	56088931	.	G	GA	1592.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.103;ClippingRankSum=0.000;DP=195;ExcessHet=3.0103;FS=1.183;MLEAC=1;MLEAF=0.500;MQ=59.09;MQRankSum=-3.295;QD=8.66;ReadPosRankSum=1.966;SOR=0.854;set=HC	GT:AD:AF:DP	0/1:134,50:0.27:184
chr7	56119730	rs3735665	T	A	1138.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:60,58:0.49:118
chr7	56119836	rs7780755	C	T	265.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:15,12:0.44:27
chr7	56122058	rs6593297	A	T	73.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:19,5:0.21:24
chr7	56123509	rs73343772	C	T	1603.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:80,73:0.48:153
chr7	56126360	rs2230197	T	C	5109.77	.	AC=1;AF=0.500;AN=2;DB;DP=582;set=Intersection	GT:AD:AF:DP	0/1:313,264:0.46:577
chr7	56136260	rs4245575	C	A	9129.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:2,355:0.99:357
chr7	56142519	rs4948104	A	G	1556.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:95,73:0.43:168
chr7	56147553	rs73343792	A	G	3925.77	.	AC=1;AF=0.500;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	0/1:215,190:0.47:405
chr7	56149847	rs17172508	C	T	6690.77	.	AC=1;AF=0.500;AN=2;DB;DP=748;set=Intersection	GT:AD:AF:DP	0/1:399,342:0.46:741
chr7	56151489	rs2242508	A	G	11559.77	.	AC=2;AF=1.00;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	1/1:0,439:1.00:439
chr7	56152063	.	AT	A	93.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.763;ClippingRankSum=0.000;DP=65;ExcessHet=3.0103;FS=3.080;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.13;ReadPosRankSum=1.046;SOR=2.049;set=HC	GT:AD:AF:DP	0/1:26,18:0.41:44
chr7	56171760	rs6593298	A	C	1124.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:42,47:0.53:89
chr7	56174115	rs10043	A	C	8450.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr7	56174140	rs816407	G	T	9820.77	.	AC=2;AF=1.00;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	1/1:0,365:1.00:365
chr7	56717637	rs1906630	T	A	2776.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:124,131:0.51:255
chr7	56717788	rs1849659	A	G	2343.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:119,109:0.48:228
chr7	56879403	rs10277636	T	C	154.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:10,9:0.47:19
chr7	56879527	rs10274643	A	G	611.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:38,19:0.33:57
chr7	56879552	rs10277871	T	C	695.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:44,23:0.34:67
chr7	57069669	rs1467279	T	C	684.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.85;QD=29.77;SOR=4.003;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr7	57069837	rs182122763	G	A	860.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.598;ClippingRankSum=0.000;DB;DP=277;ExcessHet=3.0103;FS=0.513;MLEAC=1;MLEAF=0.500;MQ=55.87;MQRankSum=-1.071;QD=3.11;ReadPosRankSum=0.529;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:211,66:0.24:277
chr7	57069910	rs7455704	C	T	230.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.198;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.08;MQRankSum=-2.102;QD=1.80;ReadPosRankSum=0.573;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:104,24:0.19:128
chr7	57069935	rs1966122	G	C	2463.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr7	57071540	rs28370313	A	G	30.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=15.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr7	57071650	.	G	GAGCAGCAGC	1050.73	.	AC=2;AF=1.00;AN=2;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr7	57071671	rs187876791	T	C	1776.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:1,54:0.98:55
chr7	57071725	rs62463099	C	T	2342.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr7	57188016	rs78588121	A	G	5613.77	.	AC=1;AF=0.500;AN=2;DB;DP=560;set=Intersection	GT:AD:AF:DP	0/1:283,275:0.49:558
chr7	57188718	rs62464802	T	C	7667.77	.	AC=1;AF=0.500;AN=2;DB;DP=692;set=Intersection	GT:AD:AF:DP	0/1:327,359:0.52:686
chr7	57233554	rs34820155	G	C	3561.77	.	AC=1;AF=0.500;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	0/1:218,184:0.46:402
chr7	57245247	rs11763159	A	G	9543.77	.	AC=2;AF=1.00;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	1/1:0,350:1.00:350
chr7	57472568	rs73360834	C	G	243.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:5,11:0.69:16
chr7	57509817	rs34480071	A	G	787.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:48,35:0.42:83
chr7	57509872	rs35052013	G	T	2440.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:111,115:0.51:226
chr7	57509966	rs36113065	C	A	4204.77	.	AC=1;AF=0.500;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	0/1:181,206:0.53:387
chr7	57510054	rs140649487	CGT	C	4560.73	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:111,118:0.52:229
chr7	57528887	rs10262770	C	G	4914.77	.	AC=1;AF=0.500;AN=2;DB;DP=495;set=Intersection	GT:AD:AF:DP	0/1:247,237:0.49:484
chr7	57528997	rs10272498	T	C	16546.77	.	AC=2;AF=1.00;AN=2;DB;DP=614;set=Intersection	GT:AD:AF:DP	1/1:0,600:1.00:600
chr7	57529392	rs13235676	A	C	20405.77	.	AC=2;AF=1.00;AN=2;DB;DP=777;set=Intersection	GT:AD:AF:DP	1/1:7,757:0.99:764
chr7	57529604	rs10276219	T	C	6191.77	.	AC=1;AF=0.500;AN=2;DB;DP=589;set=Intersection	GT:AD:AF:DP	0/1:278,307:0.52:585
chr7	63029065	rs111834224	C	T	96.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.660;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=3.157;MLEAC=1;MLEAF=0.500;MQ=50.98;MQRankSum=-0.626;QD=1.36;ReadPosRankSum=0.337;SOR=1.365;set=HC	GT:AD:AF:DP	0/1:60,11:0.15:71
chr7	63029170	.	A	G	136.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.162;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=5.471;MLEAC=1;MLEAF=0.500;MQ=58.10;MQRankSum=0.702;QD=2.53;ReadPosRankSum=-0.101;SOR=1.845;set=HC	GT:AD:AF:DP	0/1:44,10:0.19:54
chr7	63033167	.	T	TGAGGAG	503.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.153;ClippingRankSum=0.000;DP=87;ExcessHet=3.0103;FS=1.143;MLEAC=1;MLEAF=0.500;MQ=56.92;MQRankSum=-0.455;QD=7.87;ReadPosRankSum=3.477;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:46,18:0.28:64
chr7	63033229	.	T	TACGGCCCCCGGCGCC	3346.73	.	AC=2;AF=1.00;AN=2;DP=66;set=Intersection	GT:AD:AF:DP	1/1:1,52:0.98:53
chr7	63033298	.	C	CGCT	714.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.291;ClippingRankSum=0.000;DP=258;ExcessHet=3.0103;FS=1.471;MLEAC=1;MLEAF=0.500;MQ=58.60;MQRankSum=-2.553;QD=3.02;ReadPosRankSum=-0.144;SOR=0.548;set=HC	GT:AD:AF:DP	0/1:203,34:0.14:237
chr7	63033332	rs62473979	G	A	1504.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:186,87:0.32:273
chr7	63033440	rs59639281	G	A	749.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:95,38:0.29:133
chr7	63033753	rs11296161	GC	G	452.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.071;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=45.58;MQRankSum=-2.253;QD=8.23;ReadPosRankSum=-2.157;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:38,17:0.31:55
chr7	63537638	rs34875861	CT	C	868.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.274;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=3.713;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.63;ReadPosRankSum=-0.360;SOR=1.118;set=HC	GT:AD:AF:DP	0/1:66,65:0.50:131
chr7	63538931	rs368318480	A	C	4750.77	.	AC=1;AF=0.500;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	0/1:193,211:0.52:404
chr7	63673608	rs10252019	C	T	6250.77	.	AC=1;AF=0.500;AN=2;DB;DP=622;MQ=59.97;set=Intersection	GT:AD:AF:DP	0/1:319,295:0.48:614
chr7	63679733	rs10270226	A	G	4542.77	.	AC=1;AF=0.500;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	0/1:169,212:0.56:381
chr7	63680098	rs4479992	CC	TA	10435.77	.	AC=1;AF=0.500;AN=2;DB;DP=604;JOINED;set=Intersection	GT:AD:AF:DP	0/1:325,272:0.46:597
chr7	63721420	rs17767341	A	G	2057.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:81,85:0.51:166
chr7	63774584	rs812337	G	T	3244.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:173,156:0.47:329
chr7	63981563	rs10243954	A	G	3218.77	.	AC=1;AF=0.500;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	0/1:167,168:0.50:335
chr7	63983012	.	T	TA	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.009;ClippingRankSum=0.000;DP=48;ExcessHet=3.0103;FS=8.334;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.86;ReadPosRankSum=1.569;SOR=0.037;set=HC	GT:AD:AF:DP	0/1:29,8:0.22:37
chr7	63986829	rs73128772	G	C	831.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:41,37:0.47:78
chr7	64004252	rs75088143	T	C	1986.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:109,78:0.42:187
chr7	64023193	rs62461524	C	T	3526.77	.	AC=1;AF=0.500;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	0/1:184,167:0.48:351
chr7	64023371	rs6969879	T	C	6364.77	.	AC=1;AF=0.500;AN=2;DB;DP=613;set=Intersection	GT:AD:AF:DP	0/1:310,293:0.49:603
chr7	64023437	rs6965883	A	G	3353.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:163,150:0.48:313
chr7	64152262	rs28886395	A	G	6046.77	.	AC=1;AF=0.500;AN=2;DB;DP=585;set=Intersection	GT:AD:AF:DP	0/1:275,300:0.52:575
chr7	64152353	rs4718101	A	G	9928.77	.	AC=1;AF=0.500;AN=2;DB;DP=1026;set=Intersection	GT:AD:AF:DP	0/1:533,481:0.47:1014
chr7	64166642	rs35661712	T	TG	4753.73	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr7	64168806	rs4718103	T	C	7101.77	.	AC=1;AF=0.500;AN=2;DB;DP=662;set=Intersection	GT:AD:AF:DP	0/1:320,329:0.51:649
chr7	64169016	.	T	TGAA	2962	.	AC=1;AF=0.500;AN=2;BRF=0.5;FR=0.5000;HP=2;HapScore=1;MGOF=18;MMLQ=25;MQ=59.7;NF=28;NR=79;PP=2962;QD=20;SC=CCTACAAATGTGAGTATGGCA;SbPval=0.18;Source=Platypus;TC=200;TCF=41;TCR=159;TR=107;WE=64169027;WS=64169006;set=Platypus	GT:AD:AF:DP	1/0:93,107:0.54:200
chr7	64169017	.	G	GA	10704.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.470;ClippingRankSum=0.000;DP=464;ExcessHet=3.0103;FS=6.058;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.405;QD=23.89;ReadPosRankSum=3.081;SOR=0.436;set=HC	GT:AD:AF:DP	0/1:179,269:0.60:448
chr7	64169019	rs4717205	G	A,GAA	15713.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=460;set=Intersection	GT:AF:DP	1/2:0.40,0.60:448
chr7	64169061	rs4717206	G	A	9773.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:0,358:1.00:358
chr7	64254791	rs10949938	G	T	4386.77	.	AC=1;AF=0.500;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	0/1:186,198:0.52:384
chr7	64254901	rs11983033	T	C	10578.77	.	AC=1;AF=0.500;AN=2;DB;DP=1022;set=Intersection	GT:AD:AF:DP	0/1:496,512:0.51:1008
chr7	64275284	rs7809431	C	T	19923.77	.	AC=2;AF=1.00;AN=2;DB;DP=828;set=Intersection	GT:AD:AF:DP	1/1:17,752:0.98:769
chr7	64275470	.	A	AT	764.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.624;ClippingRankSum=0.000;DP=506;ExcessHet=3.0103;FS=0.500;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=2.308;QD=1.94;ReadPosRankSum=0.573;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:292,103:0.26:395
chr7	64275548	rs10236928	A	G	3734.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr7	64276089	rs9654821	A	G	16989.77	.	AC=2;AF=1.00;AN=2;DB;DP=640;set=Intersection	GT:AD:AF:DP	1/1:0,631:1.00:631
chr7	64291225	rs6460193	G	T	3011.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr7	64291244	rs7787287	T	C	1593.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:84,73:0.46:157
chr7	64291267	rs6460194	A	T	7070.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr7	64291333	rs4483043	T	A	10745.77	.	AC=2;AF=1.00;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	1/1:0,405:1.00:405
chr7	64291976	rs10949946	G	A	4360.77	.	AC=1;AF=0.500;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	0/1:231,209:0.47:440
chr7	64291991	rs4236203	T	A	10833.77	.	AC=2;AF=1.00;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	1/1:0,397:1.00:397
chr7	64312713	rs139988291	C	T	519.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:21,24:0.53:45
chr7	64313162	rs115549082	T	C	6306.77	.	AC=1;AF=0.500;AN=2;DB;DP=639;set=Intersection	GT:AD:AF:DP	0/1:324,295:0.48:619
chr7	64313483	rs116804725	A	G	6431.77	.	AC=1;AF=0.500;AN=2;DB;DP=636;set=Intersection	GT:AD:AF:DP	0/1:323,308:0.49:631
chr7	64313577	rs115478264	A	G	3503.77	.	AC=1;AF=0.500;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	0/1:162,168:0.51:330
chr7	64378806	rs7796966	C	T	1993.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:113,85:0.43:198
chr7	64389089	rs2017252	A	C	3650.77	.	AC=1;AF=0.500;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	0/1:232,182:0.44:414
chr7	64437406	rs4607487	A	G	19661.77	.	AC=2;AF=1.00;AN=2;DB;DP=722;set=Intersection	GT:AD:AF:DP	1/1:0,708:1.00:708
chr7	64438403	rs4718175	G	A	8509.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr7	64438667	rs1404453	G	A	22052.77	.	AC=2;AF=1.00;AN=2;DB;DP=827;set=Intersection	GT:AD:AF:DP	1/1:0,812:1.00:812
chr7	64439938	rs1852016	C	T	2273.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr7	64451699	rs4717229	T	C	11763.77	.	AC=2;AF=1.00;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	1/1:0,415:1.00:415
chr7	64451963	rs4618579	T	C	7805.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr7	64452830	rs34639489	C	T	4408.77	.	AC=1;AF=0.500;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	0/1:207,211:0.50:418
chr7	64453136	rs6460219	G	A	6350.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr7	64498964	.	G	A	225.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.043;ClippingRankSum=0.000;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.78;MQRankSum=0.000;QD=13.28;ReadPosRankSum=0.057;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:7,10:0.59:17
chr7	64535312	rs71533998	C	T	340.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=28.40;SOR=5.136;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr7	64639915	rs368760026	AC	A	2332.73	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:20,115:0.85:135
chr7	64639926	rs80126668	C	G	2111.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:42,96:0.70:138
chr7	64839028	rs112360885	C	G	3280.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:138,150:0.52:288
chr7	64852790	.	TTG	T	360.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.346;ClippingRankSum=0.000;DP=675;ExcessHet=3.0103;FS=1.933;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=2.885;QD=0.57;ReadPosRankSum=-2.075;SOR=0.451;set=HC	GT:AD:AF:DP	0/1:560,74:0.12:634
chr7	65082767	rs186796049	A	G	1001.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:42,43:0.51:85
chr7	65084152	rs6978207	C	T	3710.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:1,121:0.99:122
chr7	65159983	rs147104756	A	G	362.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:79,22:0.22:101
chr7	65220463	rs4718275	T	C	1018.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:29,45:0.61:74
chr7	65220697	rs4718276	G	A	7468.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr7	65305139	rs116772366	A	G	4548.77	.	AC=1;AF=0.500;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	0/1:201,211:0.51:412
chr7	65413808	rs182306958	G	A	419.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.385;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=3.396;MLEAC=1;MLEAF=0.500;MQ=55.91;MQRankSum=0.342;QD=12.35;ReadPosRankSum=0.344;SOR=1.668;set=HC	GT:AD:AF:DP	0/1:14,20:0.59:34
chr7	65418972	rs78517252	C	T	992.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:32,43:0.57:75
chr7	65426054	.	CA	C	274.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.061;ClippingRankSum=0.000;DP=197;ExcessHet=3.0103;FS=1.566;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.667;QD=1.55;ReadPosRankSum=-0.281;SOR=0.532;set=HC	GT:AD:AF:DP	0/1:128,49:0.28:177
chr7	65439879	rs781143	G	C	1381.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:62,62:0.50:124
chr7	65440835	rs112120049	CA	C	647.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.605;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=3.835;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=1.103;QD=5.78;ReadPosRankSum=-0.560;SOR=0.300;set=HC	GT:AD:AF:DP	0/1:51,61:0.54:112
chr7	65444734	rs74430256	T	C	1926.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:92,91:0.50:183
chr7	65541185	rs1183245	C	T	2244.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:183,115:0.39:298
chr7	65541307	rs1144895	C	G	617.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:32,24:0.43:56
chr7	65551931	rs313830	T	C	1880.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr7	65552230	.	CGTGT	C,CGT	2743.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.693;ClippingRankSum=0.000;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.32;MQRankSum=0.482;QD=23.25;ReadPosRankSum=0.425;SOR=0.708;set=HC	GT:AD:AF:DP	1/2:7,31,80:0.26,0.68:118
chr7	65552497	rs313829	A	G	4261.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr7	65552614	rs313828	T	C	3903.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr7	65554352	rs160647	C	T	4453.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr7	65554385	rs2460432	C	T	3504.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr7	65556936	rs1167406	G	C	7626.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr7	65557509	rs78591808	C	A	1013.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:26,42:0.62:68
chr7	65599246	rs5884583	CT	C	1117.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.140;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.20;ReadPosRankSum=0.124;SOR=0.866;set=HC	GT:AD:AF:DP	1/1:2,67:0.97:69
chr7	65599446	rs6958484	G	A	232.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:11,10:0.48:21
chr7	65817333	rs709595	G	C	569.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:25,22:0.47:47
chr7	65841981	rs6974355	A	G	316.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.162;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.32;ReadPosRankSum=0.796;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:24,10:0.29:34
chr7	65841988	rs143406954	G	A	319.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.151;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.40;ReadPosRankSum=0.683;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:24,10:0.29:34
chr7	65842221	rs11765965	A	G	301.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:10,14:0.58:24
chr7	65842543	rs112115083	C	CAT	7648.73	.	AC=1;AF=0.500;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	0/1:218,199:0.48:417
chr7	65842545	rs3815685	T	C	7658.77	.	AC=1;AF=0.500;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	0/1:218,198:0.48:416
chr7	66094008	rs35526611	C	T	2487.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.708;ClippingRankSum=0.000;DB;DP=212;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.14;ReadPosRankSum=-1.159;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:90,115:0.56:205
chr7	66098482	rs3764903	G	A	2462.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:113,118:0.51:231
chr7	66098580	rs200130485	AT	A	32.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.628;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.09;ReadPosRankSum=-1.646;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:20,10:0.33:30
chr7	66103435	rs57580125	C	CAGGA	2929.73	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:77,77:0.50:154
chr7	66104228	rs116630203	G	T	8521.77	.	AC=1;AF=0.500;AN=2;DB;DP=758;set=Intersection	GT:AD:AF:DP	0/1:346,401:0.54:747
chr7	66105589	.	A	AT	79.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.918;ClippingRankSum=0.000;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=2.032;QD=0.63;ReadPosRankSum=-1.541;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:103,23:0.18:126
chr7	66147057	rs1882655	T	C	6016.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr7	66147101	rs2420827	G	A	3244.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.638;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=1.177;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.44;ReadPosRankSum=-0.873;SOR=0.833;set=HC	GT:AD:AF:DP	0/1:87,89:0.51:176
chr7	66147110	rs3800823	C	A	3195.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.902;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=2.775;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.73;ReadPosRankSum=-2.160;SOR=0.955;set=HC	GT:AD:AF:DP	0/1:79,83:0.51:162
chr7	66147149	rs3800822	A	G	3494.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:2,128:0.98:130
chr7	66147178	rs3800820	C	T	1018.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:58,51:0.47:109
chr7	66147656	rs2003301	G	C	4132.77	.	AC=1;AF=0.500;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	0/1:167,189:0.53:356
chr7	66147697	rs5884599	A	AG	7735.73	.	AC=2;AF=1.00;AN=2;DB;DP=243;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.13;QD=33.63;SOR=1.302;set=HC	GT:AD:AF:DP	1/1:0,230:1.00:230
chr7	66147746	rs2003300	C	G	3597.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr7	66273850	rs77283486	G	A	1643.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:69,77:0.53:146
chr7	66413694	rs145349557	G	A	876.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:30,36:0.55:66
chr7	66520726	rs34783731	CA	C	237.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.066;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=3.432;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=0.761;QD=6.43;ReadPosRankSum=0.361;SOR=1.528;set=HC	GT:AD:AF:DP	0/1:14,23:0.62:37
chr7	66532235	rs2711910	A	G	2983.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:144,148:0.51:292
chr7	66548448	rs116676724	C	T	4907.77	.	AC=1;AF=0.500;AN=2;DB;DP=588;set=Intersection	GT:AD:AF:DP	0/1:328,256:0.44:584
chr7	66563473	rs80114391	T	C	3786.77	.	AC=1;AF=0.500;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	0/1:208,179:0.46:387
chr7	66582460	rs35171532	T	A	1665.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:107,99:0.48:206
chr7	66648030	rs2948336	A	G	1260.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:78,59:0.43:137
chr7	66648157	rs4145350	C	T	4727.77	.	AC=1;AF=0.500;AN=2;DB;DP=507;set=Intersection	GT:AD:AF:DP	0/1:274,233:0.46:507
chr7	66648199	rs55756354	G	A	4774.77	.	AC=1;AF=0.500;AN=2;DB;DP=490;set=Intersection	GT:AD:AF:DP	0/1:254,235:0.48:489
chr7	66660045	rs55921608	C	T	759.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:36,34:0.49:70
chr7	66660078	rs56035776	T	C	1146.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:65,51:0.44:116
chr7	66660242	rs2949097	A	G	1447.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.931;ClippingRankSum=0.000;DB;DP=321;ExcessHet=3.0103;FS=5.199;MLEAC=1;MLEAF=0.500;MQ=57.12;MQRankSum=-16.126;QD=4.63;ReadPosRankSum=-1.373;SOR=0.925;set=HC	GT:AD:AF:DP	0/1:258,55:0.18:313
chr7	66660247	rs55673383	T	C	1345.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=11.692;ClippingRankSum=0.000;DB;DP=325;ExcessHet=3.0103;FS=3.440;MLEAC=1;MLEAF=0.500;MQ=56.95;MQRankSum=-17.143;QD=4.21;ReadPosRankSum=-0.385;SOR=0.839;set=HC	GT:AD:AF:DP	0/1:267,53:0.17:320
chr7	66660360	rs34574768	C	T	1299.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:170,75:0.31:245
chr7	66660377	rs35290283	C	A	1295.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:136,70:0.34:206
chr7	66773439	rs17146158	G	A	4534.77	.	AC=1;AF=0.500;AN=2;DB;DP=469;set=Intersection	GT:AD:AF:DP	0/1:257,208:0.45:465
chr7	66773470	rs111493403	A	T	5267.77	.	AC=1;AF=0.500;AN=2;DB;DP=525;set=Intersection	GT:AD:AF:DP	0/1:281,237:0.46:518
chr7	66773822	rs150889128	C	CAG	685.73	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:29,20:0.41:49
chr7	66774157	rs2041575	T	C	1176.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:44,48:0.52:92
chr7	66774515	rs59718416	G	A	1368.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:66,59:0.47:125
chr7	66774604	rs1045513	G	C	2896.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:174,148:0.46:322
chr7	66785029	rs2537522	G	T	876.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:63,45:0.42:108
chr7	66785137	rs9443	C	A	2230.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:151,111:0.42:262
chr7	69064637	rs3735260	A	G	164.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:10,7:0.41:17
chr7	69065039	rs113411804	G	GCTGT	1323.73	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:70,63:0.47:133
chr7	70163356	rs60691934	C	CA	292.73	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:11,10:0.48:21
chr7	70227802	rs12698935	T	C	456.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:29,20:0.41:49
chr7	70228020	rs2293507	G	T	5275.77	.	AC=1;AF=0.500;AN=2;DB;DP=536;set=Intersection	GT:AD:AF:DP	0/1:273,252:0.48:525
chr7	70228139	rs2293508	A	G	6737.77	.	AC=1;AF=0.500;AN=2;DB;DP=774;set=Intersection	GT:AD:AF:DP	0/1:428,341:0.44:769
chr7	70229595	rs1983487	T	G	437.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr7	70249728	.	TAAAAAAAAAAA	T,TAA	1406.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.757;ClippingRankSum=0.000;DP=56;ExcessHet=3.0103;FS=2.404;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=32.71;ReadPosRankSum=0.177;SOR=2.038;set=HC	GT:AD:AF:DP	1/2:5,10,28:0.23,0.65:43
chr7	70252185	rs2293500	A	G	7645.77	.	AC=1;AF=0.500;AN=2;DB;DP=912;set=Intersection	GT:AD:AF:DP	0/1:511,395:0.44:906
chr7	70254674	rs941346	G	T	2688.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:120,125:0.51:245
chr7	70597675	rs6957446	T	C	820.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:37,35:0.49:72
chr7	70598059	rs2903458	A	G	3661.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr7	70765291	rs10266560	T	C	999.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:31,45:0.59:76
chr7	70765496	rs10263619	A	G	3326.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.074;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.08;ReadPosRankSum=0.172;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:96,88:0.48:184
chr7	70765503	rs7806503	C	G	3256.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.921;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.93;ReadPosRankSum=-0.620;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:87,85:0.49:172
chr7	70765600	rs66762992	CCA	C	619.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.510;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=4.572;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.89;ReadPosRankSum=-1.077;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:18,21:0.54:39
chr7	70800407	rs13240200	T	G	696.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:22,27:0.55:49
chr7	70800468	rs73181639	C	T	1344.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:65,63:0.49:128
chr7	70853118	rs77859267	C	T	930.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:43,42:0.49:85
chr7	70885883	rs11455717	C	CT	5660.73	.	AC=1;AF=0.500;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	0/1:191,183:0.49:374
chr7	70886107	rs11455716	G	GC	5318.73	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr7	71036473	rs10277319	C	T	2482.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr7	71135192	rs2302440	A	G	2176.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:70,92:0.57:162
chr7	71571436	rs10950296	G	C	1769.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.54;SOR=2.019;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr7	71743954	rs74998753	T	G	254.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:20,12:0.38:32
chr7	71868228	rs62463250	A	C	1187.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:88,63:0.42:151
chr7	72193864	rs3015858	T	C	18195.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.157;ClippingRankSum=0.000;DB;DP=414;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.19;MQRankSum=-0.260;QD=44.16;ReadPosRankSum=-0.888;SOR=0.389;set=HC	GT:AD:AF:DP	1/1:1,411:1.00:412
chr7	72193868	rs2960999	G	A	18252.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.241;ClippingRankSum=0.000;DB;DP=414;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.30;MQRankSum=-0.227;QD=44.30;ReadPosRankSum=-0.711;SOR=0.357;set=HC	GT:AD:AF:DP	1/1:1,411:1.00:412
chr7	72209527	rs11354897	CA	C	24019.73	.	AC=2;AF=1.00;AN=2;DB;DP=658;set=Intersection	GT:AD:AF:DP	1/1:0,653:1.00:653
chr7	72267637	rs200906243	C	CT	638.73	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:16,38:0.70:54
chr7	72277630	rs67852668	C	A	11071.77	.	AC=2;AF=1.00;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	1/1:0,409:1.00:409
chr7	72277981	rs2286317	T	C	10472.77	.	AC=2;AF=1.00;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	1/1:0,399:1.00:399
chr7	72280978	rs11281952	G	GTGTGTT	10286.73	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr7	72281355	rs35534997	C	T	2373.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr7	72395666	.	C	CCGGCGGCTG	1856.73	.	AC=2;AF=1.00;AN=2;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr7	72395789	rs141884613	C	T	2466.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr7	72396170	.	GCGCCGCGCTCCCCAC	G	1800.73	.	AC=2;AF=1.00;AN=2;DP=102;set=Intersection	GT:AD:AF:DP	1/1:1,71:0.99:72
chr7	72413581	rs71554687	G	A	3583.77	.	AC=1;AF=0.500;AN=2;DB;DP=829;set=Intersection	GT:AD:AF:DP	0/1:610,217:0.26:827
chr7	72413593	rs71554688	T	C	3190.77	.	AC=1;AF=0.500;AN=2;DB;DP=776;set=Intersection	GT:AD:AF:DP	0/1:587,188:0.24:775
chr7	72416333	rs237934	C	G	1727.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr7	72613683	.	TA	T	234.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.095;ClippingRankSum=0.000;DP=154;ExcessHet=3.0103;FS=0.722;MLEAC=1;MLEAF=0.500;MQ=47.55;MQRankSum=-5.638;QD=1.53;ReadPosRankSum=-0.881;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:115,38:0.25:153
chr7	72664015	rs202030378	C	CG	171.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.349;ClippingRankSum=-0.000;DB;DP=35;ExcessHet=3.0103;FS=5.643;MLEAC=1;MLEAF=0.500;MQ=44.47;MQRankSum=1.030;QD=13.21;ReadPosRankSum=-2.029;SOR=3.611;set=HC	GT:AD:AF:DP	0/1:5,8:0.62:13
chr7	72711986	rs62465077	G	T	2205.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.090;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.29;MQRankSum=-1.698;QD=39.39;ReadPosRankSum=-0.582;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:1,55:0.98:56
chr7	72711991	rs62465078	C	T	2089.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.428;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.41;MQRankSum=-1.706;QD=43.54;ReadPosRankSum=-0.314;SOR=3.486;set=HC	GT:AD:AF:DP	1/1:1,47:0.98:48
chr7	72712121	rs62465079	T	C	1348.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.88;QD=26.98;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr7	72712333	.	C	A	1051.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.466;ClippingRankSum=0.000;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.86;MQRankSum=-4.012;QD=8.28;ReadPosRankSum=0.746;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:68,59:0.46:127
chr7	72717933	rs11544043	C	T	4358.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:2,162:0.99:164
chr7	72718104	.	G	C	7854.77	.	AC=2;AF=1.00;AN=2;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr7	72738350	rs55963844	C	CG	5185.73	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr7	72738749	rs28626137	A	G	10551.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr7	72738762	rs6980258	CA	TG	9694.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr7	72750627	rs4717751	G	A	1118.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr7	72861849	rs2237279	T	C	630.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr7	72879898	.	G	GA	326.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.750;ClippingRankSum=0.000;DP=118;ExcessHet=3.0103;FS=11.843;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.238;QD=3.51;ReadPosRankSum=1.214;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:61,32:0.34:93
chr7	72891754	rs2074754	C	T	14994.77	.	AC=2;AF=1.00;AN=2;DB;DP=543;set=Intersection	GT:AD:AF:DP	1/1:0,535:1.00:535
chr7	72966422	.	C	CA	409.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.160;ClippingRankSum=0.000;DP=245;ExcessHet=3.0103;FS=0.846;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=0.000;QD=1.83;ReadPosRankSum=-0.134;SOR=0.523;set=HC	GT:AD:AF:DP	0/1:168,56:0.25:224
chr7	73009879	rs117297348	G	A	5103.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr7	73020301	rs799157	T	C	9222.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:0,341:1.00:341
chr7	73096993	rs8891	T	C	3760.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr7	73097654	rs1128349	C	T	12627.77	.	AC=2;AF=1.00;AN=2;DB;DP=466;set=Intersection	GT:AD:AF:DP	1/1:0,459:1.00:459
chr7	73112057	rs369894399	TG	T	5959.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.831;ClippingRankSum=0.000;DB;DP=205;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.21;MQRankSum=0.180;QD=30.41;ReadPosRankSum=-0.283;SOR=0.303;set=HC	GT:AD:AF:DP	1/1:1,195:0.99:196
chr7	73118033	rs35459363	G	A	6114.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:1,230:1.00:231
chr7	73118398	rs7807316	T	C	1300.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr7	73122923	rs2228607	A	G	8398.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:0,325:1.00:325
chr7	73152796	rs150117672	G	A	3053.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:123,141:0.53:264
chr7	73243786	rs4717822	T	G	10088.77	.	AC=2;AF=1.00;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	1/1:0,365:1.00:365
chr7	73245519	rs8629	T	C	11471.77	.	AC=2;AF=1.00;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	1/1:0,435:1.00:435
chr7	73249165	rs13246460	T	A	10984.77	.	AC=2;AF=1.00;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	1/1:0,417:1.00:417
chr7	73249299	rs13232463	G	C	3279.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr7	73254812	rs13241921	T	C	5087.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr7	73254910	rs13242043	T	A	1357.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr7	73255647	rs4717823	G	C	5179.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:4,197:0.98:201
chr7	73275396	rs4324825	G	A	493.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:17,23:0.57:40
chr7	73275501	rs11770024	T	C	4503.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr7	73275565	rs11770052	T	A	5179.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.70;SOR=1.896;set=HC	GT:AD:AF:DP	1/1:0,194:1.00:194
chr7	73275769	rs11767129	C	T	1155.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr7	73279233	rs10675041	C	CAA	1470.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.166;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=1.830;MLEAC=1;MLEAF=0.500;MQ=60.58;MQRankSum=0.585;QD=21.63;ReadPosRankSum=-0.194;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:6,62:0.91:68
chr7	73279482	rs13227841	T	C	8148.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:1,299:1.00:300
chr7	73280020	rs1136647	C	T	5451.77	.	AC=1;AF=0.500;AN=2;DB;DP=565;set=Intersection	GT:AD:AF:DP	0/1:288,261:0.48:549
chr7	73456850	rs13239907	G	A	277.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:24,14:0.37:38
chr7	73467650	rs150142298	CTGTGTG	C,CTG	1430.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.14;QD=34.07;SOR=3.086;set=HC	GT:AD:AF:DP	1/2:0,17,25:0.40,0.60:42
chr7	73470782	rs2856728	C	T	3572.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr7	73472050	rs28763986	C	T	2269.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr7	73479946	.	G	GA	277.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.578;ClippingRankSum=0.000;DP=238;ExcessHet=3.0103;FS=1.632;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=3.337;QD=1.35;ReadPosRankSum=0.669;SOR=0.909;set=HC	GT:AD:AF:DP	0/1:155,51:0.25:206
chr7	73513242	rs34911416	CA	C	635.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.211;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=3.605;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=0.879;QD=6.99;ReadPosRankSum=-0.634;SOR=1.508;set=HC	GT:AD:AF:DP	0/1:25,66:0.73:91
chr7	73530046	rs149618	A	G	3361.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr7	73664227	rs3135662	G	T	2378.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:93,110:0.54:203
chr7	73666736	.	CA	C	146.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.098;ClippingRankSum=0.000;DP=74;ExcessHet=3.0103;FS=1.334;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.397;QD=2.13;ReadPosRankSum=0.377;SOR=0.388;set=HC	GT:AD:AF:DP	0/1:49,20:0.29:69
chr7	73752699	rs574637	C	T	4606.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr7	73753250	rs539518	T	C	15311.77	.	AC=2;AF=1.00;AN=2;DB;DP=588;set=Intersection	GT:AD:AF:DP	1/1:0,579:1.00:579
chr7	73768065	rs504854	T	C	2721.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr7	73779323	.	TTGTGTGTGTGTGTGTGTGTGTGTG	T	103.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282;ClippingRankSum=-0.000;DP=32;ExcessHet=3.0103;FS=2.430;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=-0.000;QD=10.37;ReadPosRankSum=0.272;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:6,4:0.40:10
chr7	73800711	rs10156213	C	T	1154.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:58,51:0.47:109
chr7	73803644	rs35415684	T	A	525.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:26,23:0.47:49
chr7	73814749	rs2522943	G	C	16719.77	.	AC=2;AF=1.00;AN=2;DB;DP=657;set=Intersection	GT:AD:AF:DP	1/1:0,639:1.00:639
chr7	73818404	rs2240436	C	T	1545.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr7	73971995	rs149209759	A	G	1828.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:159,94:0.37:253
chr7	74004032	.	G	GA	819.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.075;ClippingRankSum=0.000;DP=126;ExcessHet=3.0103;FS=0.918;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.25;ReadPosRankSum=1.820;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:51,62:0.55:113
chr7	74119475	.	A	AT	1522.73	.	AC=1;AF=0.500;AN=2;DP=203;set=Intersection	GT:AD:AF:DP	0/1:92,105:0.53:197
chr7	74167356	rs116428284	A	T	2961.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.430;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=35.50;MQRankSum=-2.497;QD=24.28;ReadPosRankSum=-0.045;SOR=0.273;set=HC	GT:AD:AF:DP	1/1:1,121:0.99:122
chr7	74191707	rs145170670	C	T	2724.77	.	AC=1;AF=0.500;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	0/1:266,149:0.36:415
chr7	74191729	rs377662255	C	T	1353.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.751;ClippingRankSum=0.000;DB;DP=296;ExcessHet=3.0103;FS=4.834;MLEAC=1;MLEAF=0.500;MQ=51.41;MQRankSum=-1.059;QD=4.62;ReadPosRankSum=1.719;SOR=1.003;set=HC	GT:AD:AF:DP	0/1:214,79:0.27:293
chr7	74193668	rs17295741	G	A	6418.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr7	74197598	.	T	A	565.77	.	AC=2;AF=1.00;AN=2;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.32;QD=26.94;SOR=2.636;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr7	74251390	rs200184967	A	C	1348.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.44;QD=24.52;SOR=1.159;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr7	74470190	rs200459061	C	A	777.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.184;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=40.43;MQRankSum=-2.116;QD=12.15;ReadPosRankSum=0.194;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:35,29:0.45:64
chr7	74480550	rs189981194	G	A	210.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.594;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=40.74;MQRankSum=-1.567;QD=8.11;ReadPosRankSum=0.097;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:16,10:0.38:26
chr7	74489486	rs6955671	T	C	3293.77	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:194,163:0.46:357
chr7	74524986	rs142604065	G	A	1062.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.471;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=2.294;MLEAC=1;MLEAF=0.500;MQ=47.67;MQRankSum=-2.969;QD=13.28;ReadPosRankSum=1.992;SOR=1.143;set=HC	GT:AD:AF:DP	0/1:34,46:0.57:80
chr7	74536839	rs370302219	AT	A	60.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.815;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=4.867;MLEAC=1;MLEAF=0.500;MQ=42.59;MQRankSum=0.086;QD=2.76;ReadPosRankSum=0.593;SOR=0.544;set=HC	GT:AD:AF:DP	0/1:12,10:0.45:22
chr7	74563411	.	C	T	87.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.979;ClippingRankSum=-0.000;DP=13;ExcessHet=3.0103;FS=2.522;MLEAC=1;MLEAF=0.500;MQ=41.56;MQRankSum=0.148;QD=6.75;ReadPosRankSum=-0.900;SOR=0.204;set=HC	GT:AD:AF:DP	0/1:7,6:0.46:13
chr7	74608740	.	C	CTT	268.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.964;ClippingRankSum=0.000;DP=203;ExcessHet=3.0103;FS=0.853;MLEAC=1;MLEAF=0.500;MQ=44.29;MQRankSum=-7.568;QD=1.39;ReadPosRankSum=3.182;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:163,31:0.16:194
chr7	75039300	rs112848269	C	T	740.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:39,33:0.46:72
chr7	75044385	rs236649	C	T	3002.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr7	75044830	rs236651	G	A	1072.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:177,61:0.26:238
chr7	75045496	rs201842651	AG	A	2026.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.722;ClippingRankSum=0.000;DB;DP=400;ExcessHet=3.0103;FS=43.023;MLEAC=1;MLEAF=0.500;MQ=54.20;MQRankSum=-16.533;QD=5.20;ReadPosRankSum=1.746;SOR=0.921;set=HC	GT:AD:AF:DP	0/1:283,107:0.27:390
chr7	75045599	rs143493271	G	A	451.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.619;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=70.295;MLEAC=1;MLEAF=0.500;MQ=46.60;MQRankSum=-4.194;QD=2.13;ReadPosRankSum=1.829;SOR=4.802;set=HC	GT:AD:AF:DP	0/1:178,34:0.16:212
chr7	75051368	rs398003	T	C	4132.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=2.590;MLEAC=1;MLEAF=0.500;MQ=57.63;MQRankSum=-1.925;QD=21.30;ReadPosRankSum=2.288;SOR=0.522;set=HC	GT:AD:AF:DP	0/1:84,110:0.57:194
chr7	75051375	rs398016	T	C	3944.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.393;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=0.577;MLEAC=1;MLEAF=0.500;MQ=57.42;MQRankSum=-1.703;QD=22.80;ReadPosRankSum=2.556;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:75,98:0.57:173
chr7	75055768	.	T	G	257.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.167;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;FS=3.638;MLEAC=1;MLEAF=0.500;MQ=47.58;MQRankSum=-2.674;QD=7.36;ReadPosRankSum=0.489;SOR=0.245;set=HC	GT:AD:AF:DP	0/1:22,13:0.37:35
chr7	75066678	rs10274546	C	T	1048.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:38,44:0.54:82
chr7	75115178	rs181558064	G	A	1166.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:42,53:0.56:95
chr7	75115226	rs55838432	G	A	364.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:46,20:0.30:66
chr7	75145266	rs5884966	TA	T	1494.73	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:129,104:0.45:233
chr7	75171438	rs11773745	G	A	312.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:14,15:0.52:29
chr7	75176196	rs1167800	G	A	1265.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:45,54:0.55:99
chr7	75185985	rs794368	A	G	1844.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr7	75185990	.	C	CA	43.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.573;ClippingRankSum=0.000;DP=59;ExcessHet=3.0103;FS=4.219;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.83;ReadPosRankSum=-0.466;SOR=0.178;set=HC	GT:AD:AF:DP	0/1:41,12:0.23:53
chr7	75210763	rs237239	TG	CA	1320.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;JOINED;set=Intersection	GT:AD:AF:DP	0/1:26,34:0.57:60
chr7	75216202	rs1167787	A	G	1599.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:61,76:0.55:137
chr7	75221508	rs41281689	G	T	1441.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:60,69:0.53:129
chr7	75398998	rs2302009	A	C	2776.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:194,144:0.43:338
chr7	75441108	rs11465315	C	T	8198.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.32;SOR=1.026;set=HC	GT:AD:AF:DP	1/1:0,185:1.00:185
chr7	75441111	rs11465314	G	T	8198.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.84;SOR=1.050;set=HC	GT:AD:AF:DP	1/1:0,187:1.00:187
chr7	75442764	rs41364146	G	A	1888.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:68,87:0.56:155
chr7	75508213	rs148383561	CGGGG	C	141.50	.	AC=1;AF=0.500;AN=2;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=4.771;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=23.58;SOR=1.872;set=HC	GT:AD:AF:DP	0/1:1,5:0.83:6
chr7	75513062	rs42183	A	G	17271.77	.	AC=2;AF=1.00;AN=2;DB;DP=663;set=Intersection	GT:AD:AF:DP	1/1:0,659:1.00:659
chr7	75597545	rs10954724	C	T	386.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:21,21:0.50:42
chr7	75601867	rs17148944	G	A	927.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:50,44:0.47:94
chr7	75610763	rs2286819	G	A	5643.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr7	75610808	rs2286820	G	A	3846.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:128,180:0.58:308
chr7	75612770	rs13223707	C	G	8144.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr7	75612783	rs13240147	G	A	10523.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr7	75612803	rs41301394	C	T	12558.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr7	75614029	rs4732515	T	C	5506.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr7	75614082	rs4732516	C	G	13395.77	.	AC=2;AF=1.00;AN=2;DB;DP=484;set=Intersection	GT:AD:AF:DP	1/1:0,475:1.00:475
chr7	75614557	rs41301427	G	A	3333.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:165,154:0.48:319
chr7	75614777	rs2302429	G	A	885.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:24,37:0.61:61
chr7	75614863	rs2302431	TG	CT	9650.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr7	75614953	rs2228104	T	C	12071.77	.	AC=2;AF=1.00;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	1/1:0,436:1.00:436
chr7	75615006	rs1057868	C	T	16710.77	.	AC=2;AF=1.00;AN=2;DB;DP=607;set=Intersection	GT:AD:AF:DP	1/1:0,604:1.00:604
chr7	75615850	rs41302345	C	T	722.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:33,29:0.47:62
chr7	75616577	rs8509	G	A	5584.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.649;ClippingRankSum=0.000;DB;DP=505;ExcessHet=3.0103;FS=2.450;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.10;ReadPosRankSum=1.499;SOR=0.867;set=HC	GT:AD:AF:DP	0/1:255,248:0.49:503
chr7	75616817	rs201142190	GGACA	G	12828.73	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr7	75618380	.	C	G	161	.	AC=2;AF=1.00;AN=2;BRF=0.52;FR=1.0000;HP=5;HapScore=2;MGOF=184;MMLQ=24;MQ=60.54;NF=6;NR=0;PP=161;QD=32.6285354245;SC=GGCCGGGTTCCGGGGGAAGGC;SbPval=1.0;Source=Platypus;TC=13;TCF=13;TCR=0;TR=6;WE=75618388;WS=75618374;set=Platypus	GT:AD:AF:DP	1/1:7,6:0.46:13
chr7	75618425	.	GGTAGGGGGCTAGGGGT	G	1181	.	AC=1;AF=0.500;AN=2;BRF=0.54;FR=0.5000;HP=5;HapScore=1;MGOF=121;MMLQ=25;MQ=59.59;NF=8;NR=0;PP=1181;QD=150.5;SC=GGGGGAGGGGGGTAGGGGGCT;SbPval=1.0;Source=Platypus;TC=21;TCF=21;TCR=0;TR=8;WE=75618448;WS=75618415;set=Platypus	GT:AD:AF:DP	0/1:13,8:0.38:21
chr7	75621661	rs2286826	G	C	1872.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr7	75621827	rs4732519	A	G	2552.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr7	75621979	rs6467956	T	C	534.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr7	75623893	rs114462308	G	A	3650.77	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:161,169:0.51:330
chr7	75625968	rs76760929	T	G	1625.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:70,73:0.51:143
chr7	75628461	rs4728538	A	T	596.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr7	75629778	rs3801472	T	C	3213.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:154,153:0.50:307
chr7	75630183	rs2302434	C	T	1290.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:62,61:0.50:123
chr7	75633209	rs2058389	T	C	2138.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:102,107:0.51:209
chr7	75643313	rs7798794	C	T	2560.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr7	75657850	rs11983987	A	G	1003.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:47,39:0.45:86
chr7	75659547	rs6957698	C	A	1310.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:53,53:0.50:106
chr7	75677430	rs10231092	C	G	6976.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:1,266:1.00:267
chr7	75677504	rs6720	C	T	5501.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:1,208:1.00:209
chr7	75677578	rs2286828	G	T	1112.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:42,49:0.54:91
chr7	75684326	rs79663210	G	A	1042.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:35,46:0.57:81
chr7	75692927	rs1637037	C	T	6412.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:2,234:0.99:236
chr7	75693009	rs1637039	C	T	1484.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr7	75693963	rs2286830	T	C	1408.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr7	75694079	rs11972240	T	G	2377.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr7	75806299	rs12538908	A	G	3042.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr7	75877354	rs1859795	A	G	716.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:17,29:0.63:46
chr7	75889151	rs150272766	G	GC	360.73	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:20,16:0.44:36
chr7	75889184	rs6950229	T	C	933.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:46,43:0.48:89
chr7	75894946	rs6465068	G	A	946.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:50,44:0.47:94
chr7	75896466	rs6955911	A	G	1091.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:20,43:0.68:63
chr7	75912536	rs3839766	TG	T	799.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.58;SOR=1.942;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr7	75914934	rs75544239	G	GC	5417.73	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr7	75959188	rs2072435	G	A	7598.77	.	AC=1;AF=0.500;AN=2;DB;DP=681;set=Intersection	GT:AD:AF:DP	0/1:327,345:0.51:672
chr7	76019746	rs55920832	C	G	628.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:28,26:0.48:54
chr7	76023029	rs10261314	T	C	3171.77	.	AC=1;AF=0.500;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	0/1:214,150:0.41:364
chr7	76023088	rs140509712	C	CG	14579.73	.	AC=2;AF=1.00;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	1/1:0,408:1.00:408
chr7	76023131	rs35508921	A	AG	17586.73	.	AC=2;AF=1.00;AN=2;DB;DP=505;set=Intersection	GT:AD:AF:DP	1/1:0,493:1.00:493
chr7	76024520	rs2286427	C	T	2147.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:109,105:0.49:214
chr7	76027235	rs6963070	T	C	1782.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:58,73:0.56:131
chr7	76027901	rs113567515	T	C	588.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:22,27:0.55:49
chr7	76027912	rs112701136	A	G	583.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:29,30:0.51:59
chr7	76028163	rs75640836	C	T	841.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:19,37:0.66:56
chr7	76033544	rs11773646	T	C	486.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:15,20:0.57:35
chr7	76033805	rs11773653	A	T	1262.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:71,64:0.47:135
chr7	76033906	rs11760779	T	C	557.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:22,26:0.54:48
chr7	76054372	rs2286428	G	A	4803.77	.	AC=1;AF=0.500;AN=2;DB;DP=530;set=Intersection	GT:AD:AF:DP	0/1:273,247:0.47:520
chr7	76058767	rs6465128	G	T	9817.77	.	AC=2;AF=1.00;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	1/1:1,365:1.00:366
chr7	76062434	.	G	GTTTGGT	5738.73	.	AC=2;AF=1.00;AN=2;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=63.20;QD=44.14;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,130:1.00:130
chr7	76062770	rs3762031	C	A	1438.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:50,59:0.54:109
chr7	76063333	rs3972768	T	C	1202.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.531;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=12.788;MLEAC=2;MLEAF=1.000;MQ=39.96;MQRankSum=-3.953;QD=31.65;ReadPosRankSum=1.064;SOR=7.223;set=HC	GT:AD:AF:DP	1/1:2,36:0.95:38
chr7	76069486	rs80209248	G	A	259.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.313;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=2.793;MLEAC=1;MLEAF=0.500;MQ=45.73;MQRankSum=-1.973;QD=11.29;ReadPosRankSum=0.894;SOR=1.552;set=HC	GT:AD:AF:DP	0/1:15,8:0.35:23
chr7	76069629	rs73363163	G	A	3168.77	.	AC=1;AF=0.500;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	0/1:244,156:0.39:400
chr7	76069811	rs2906999	T	C	11411.77	.	AC=2;AF=1.00;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	1/1:4,390:0.99:394
chr7	76071003	rs78087397	C	G	866.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:28,38:0.58:66
chr7	76111994	rs1638075	C	G	3468.77	.	AC=1;AF=0.500;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	0/1:237,177:0.43:414
chr7	76112060	rs1638074	C	T	13782.77	.	AC=2;AF=1.00;AN=2;DB;DP=492;set=Intersection	GT:AD:AF:DP	1/1:0,489:1.00:489
chr7	76112487	rs1638073	G	A	2536.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:2,91:0.98:93
chr7	76126737	rs145964625	C	T	226.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.916;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.74;MQRankSum=-2.493;QD=1.13;ReadPosRankSum=-0.635;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:166,34:0.17:200
chr7	76129364	rs78474289	G	C	306.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:7,15:0.68:22
chr7	76131645	rs6979487	A	G	2109.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:115,106:0.48:221
chr7	76131762	rs150141824	A	G	1770.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:68,83:0.55:151
chr7	76141300	rs138814406	T	TC	61.25	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.98;QD=20.42;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr7	76142329	rs115931779	G	A	3062.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:127,139:0.52:266
chr7	76144455	rs1799125	A	C	25449.77	.	AC=2;AF=1.00;AN=2;DB;DP=979;set=Intersection	GT:AD:AF:DP	1/1:0,976:1.00:976
chr7	76144560	rs1799126	T	C	5628.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr7	76239480	rs200882024	C	A	3595.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.72;QD=26.64;SOR=1.393;set=HC	GT:AD:AF:DP	1/1:0,135:1.00:135
chr7	76239503	rs140446540	G	GC	5483.73	.	AC=2;AF=1.00;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.94;QD=32.26;SOR=1.240;set=HC	GT:AD:AF:DP	1/1:0,170:1.00:170
chr7	76239703	rs150952334	T	A	1433.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr7	76240677	rs1799211	T	G	1566.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr7	76240727	rs148426627	G	A	1665.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:45,69:0.61:114
chr7	76240785	rs71819724	CA	C	9462.73	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr7	76240888	rs1134609	A	G	7659.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.91;QD=27.07;SOR=0.918;set=HC	GT:AD:AF:DP	1/1:0,283:1.00:283
chr7	76241068	rs187692176	C	T	3189.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:6,126:0.95:132
chr7	76241144	rs201066556	C	A	1106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.225;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=20.607;MLEAC=1;MLEAF=0.500;MQ=47.97;MQRankSum=2.070;QD=19.08;ReadPosRankSum=-2.070;SOR=2.545;set=HC	GT:AD:AF:DP	0/1:15,43:0.74:58
chr7	76247668	rs1636619	G	A	2634.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.328;ClippingRankSum=0.000;DB;DP=600;ExcessHet=3.0103;FS=0.577;MLEAC=1;MLEAF=0.500;MQ=48.15;MQRankSum=-7.379;QD=4.39;ReadPosRankSum=-0.509;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:425,175:0.29:600
chr7	76255032	rs2527936	A	G	14741.77	.	AC=2;AF=1.00;AN=2;DB;DP=556;set=Intersection	GT:AD:AF:DP	1/1:0,543:1.00:543
chr7	76255360	rs200164764	G	C	53.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:97,13:0.12:110
chr7	76255452	rs62476699	G	A	9727.77	.	AC=2;AF=1.00;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	1/1:0,363:1.00:363
chr7	76255491	rs71535586	C	T	9264.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chr7	76255998	rs2006268	T	C	876.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:83,49:0.37:132
chr7	76256104	.	G	GGGAGGGCGGTGT	1188.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.914;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=3.531;MLEAC=1;MLEAF=0.500;MQ=53.33;MQRankSum=1.801;QD=37.15;ReadPosRankSum=1.402;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:2,30:0.94:32
chr7	76607938	rs56083327	C	T	776.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr7	76608143	rs2245368	C	T	2601.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr7	76610095	rs62473742	C	T	3329.77	.	AC=1;AF=0.500;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	0/1:211,167:0.44:378
chr7	76610299	rs62473743	A	G	5694.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr7	76610346	rs71552449	C	T	840.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:111,45:0.29:156
chr7	76610407	rs62473744	A	G	5439.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr7	76610621	rs6956966	T	C	328.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.61;QD=27.40;SOR=2.670;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr7	76619795	rs149365700	G	A	599.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:7,24:0.77:31
chr7	76624959	rs55895615	C	T	203.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.039;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.20;MQRankSum=-4.352;QD=1.96;ReadPosRankSum=-0.073;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:82,22:0.21:104
chr7	76629387	rs374647487	A	G	34.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=17.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr7	76629626	rs145082715	G	A	634.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.291;ClippingRankSum=0.000;DB;DP=252;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.51;MQRankSum=-3.763;QD=2.59;ReadPosRankSum=-4.294;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:192,53:0.22:245
chr7	76629830	rs145314075	C	G	54.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.189;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=3.680;MLEAC=1;MLEAF=0.500;MQ=45.31;MQRankSum=0.217;QD=7.82;ReadPosRankSum=-0.792;SOR=2.833;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr7	76632736	rs3748126	C	G	6505.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr7	76633640	rs79277119	C	A	487.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=45.70;MQRankSum=0.720;QD=9.20;ReadPosRankSum=-1.306;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:29,24:0.45:53
chr7	76634237	rs377009367	G	A	402.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.333;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=1.561;MLEAC=1;MLEAF=0.500;MQ=43.64;MQRankSum=-1.969;QD=13.89;ReadPosRankSum=-0.418;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:10,19:0.66:29
chr7	76634269	rs77501390	G	A	1113.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.93;QD=35.93;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr7	76634274	rs67390349	CTGCTGT	C	690.73	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:11,19:0.63:30
chr7	76635003	rs76696965	A	T	2588.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.43;QD=43.88;SOR=0.871;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr7	76635006	rs200111237	C	T	2557.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.34;QD=44.87;SOR=0.877;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr7	76635139	rs62474189	CG	TA	466.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=47.66;QD=42.43;SOR=2.494;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr7	76723447	rs200343407	C	T	152.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.88;QD=25.47;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr7	76723513	rs113756101	G	T	159.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.501;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.54;MQRankSum=-0.084;QD=15.98;ReadPosRankSum=0.210;SOR=1.863;set=HC	GT:AD:AF:DP	0/1:3,7:0.70:10
chr7	76742649	rs142960161	A	G	1324.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=38.48;QD=25.98;SOR=1.201;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr7	76751068	rs71555938	G	C	153.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.716;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=4.775;MLEAC=1;MLEAF=0.500;MQ=40.00;MQRankSum=0.079;QD=8.09;ReadPosRankSum=0.200;SOR=2.066;set=HC	GT:AD:AF:DP	0/1:12,7:0.37:19
chr7	76751252	rs3864642	C	G	686.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:28,30:0.52:58
chr7	76751543	rs4412304	G	A	4014.77	.	AC=1;AF=0.500;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	0/1:180,191:0.51:371
chr7	76751658	rs6962194	C	A	1510.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:47,65:0.58:112
chr7	76796958	rs28431858	T	G	274.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=10.054;ClippingRankSum=0.000;DB;DP=355;ExcessHet=3.0103;FS=60.410;MLEAC=1;MLEAF=0.500;MQ=54.42;MQRankSum=-11.057;QD=0.77;ReadPosRankSum=-1.158;SOR=5.938;set=HC	GT:AD:AF:DP	0/1:315,40:0.11:355
chr7	76871086	rs74783981	G	A	4986.77	.	AC=1;AF=0.500;AN=2;DB;DP=506;set=Intersection	GT:AD:AF:DP	0/1:255,239:0.48:494
chr7	76883685	rs3114318	T	C	1089.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr7	76883717	rs2056709	C	A	1494.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr7	76883989	rs3114319	C	T	687.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr7	76885769	rs3108428	A	G	6623.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr7	76903784	.	G	GT	45.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.003;ClippingRankSum=0.000;DP=21;ExcessHet=3.0103;FS=4.947;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.41;ReadPosRankSum=-0.396;SOR=0.124;set=HC	GT:AD:AF:DP	0/1:13,6:0.32:19
chr7	76958730	rs10274222	A	G	6671.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr7	76984752	rs35161141	CA	C	2663.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.682;ClippingRankSum=0.000;DB;DP=258;ExcessHet=3.0103;FS=7.223;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=0.936;QD=11.89;ReadPosRankSum=-1.043;SOR=0.315;set=HC	GT:AD:AF:DP	0/1:40,184:0.82:224
chr7	77006092	rs34587200	CA	C	71.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.037;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=1.311;QD=1.99;ReadPosRankSum=-0.370;SOR=0.599;set=HC	GT:AD:AF:DP	0/1:22,14:0.39:36
chr7	77006717	rs34017497	CAAA	C,CAA	1139.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.743;ClippingRankSum=0.000;DB;DP=227;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=10.85;ReadPosRankSum=0.317;SOR=0.582;set=HC	GT:AD:AF:DP	1/2:21,39,45:0.37,0.43:105
chr7	77035392	rs6949654	T	C	2096.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr7	77539744	rs711309	G	A	4851.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr7	77552127	rs848486	G	A	1584.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr7	77708131	rs73136595	A	G	267.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:16,12:0.43:28
chr7	77756580	rs2074641	T	C	1702.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:72,75:0.51:147
chr7	77756724	rs7812015	C	T	3096.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:161,151:0.48:312
chr7	77756815	rs9656109	G	T	960.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:55,44:0.44:99
chr7	77756849	rs2074642	C	T	716.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:36,34:0.49:70
chr7	77756865	rs2074643	T	C	442.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:26,22:0.46:48
chr7	77764253	rs1465221	G	A	453.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:13,19:0.59:32
chr7	77764591	rs767682	C	A	2685.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:108,125:0.54:233
chr7	78119199	rs1990577	A	C	9392.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.955;ClippingRankSum=0.000;DB;DP=369;ExcessHet=3.0103;FS=4.252;MLEAC=2;MLEAF=1.000;MQ=60.15;MQRankSum=0.142;QD=25.95;ReadPosRankSum=-1.481;SOR=1.111;set=HC	GT:AD:AF:DP	1/1:1,361:1.00:362
chr7	78119221	rs3086374	G	GAA,GAAA	6436.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.283;ClippingRankSum=0.000;DB;DP=253;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.21;MQRankSum=0.165;QD=29.66;ReadPosRankSum=1.566;SOR=1.064;set=HC	GT:AD:AF:DP	1/2:1,181,35:0.83,0.16:217
chr7	78130801	rs10641091	C	CT	978.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.607;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=2.924;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.877;QD=8.16;ReadPosRankSum=-0.767;SOR=0.432;set=HC	GT:AD:AF:DP	0/1:48,72:0.60:120
chr7	78256342	rs38116	C	T	4774.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr7	78256643	rs38117	G	T	1037.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr7	79828450	rs57711391	CT	C	80.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.820;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=3.039;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.11;ReadPosRankSum=0.732;SOR=1.230;set=HC	GT:AD:AF:DP	0/1:57,16:0.22:73
chr7	80141069	rs10230573	A	G	2521.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:124,111:0.47:235
chr7	80285850	rs3173798	T	C	1349.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:43,52:0.55:95
chr7	80290369	rs3211892	A	G	9219.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr7	80374342	rs1949971	A	G	10614.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	1/1:0,384:1.00:384
chr7	80374438	rs1949972	T	C	8549.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr7	80378148	rs1405743	T	C	3050.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr7	80378175	rs2886793	T	C	4965.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr7	80378319	rs2272351	G	C	8091.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr7	80387766	rs1058425	C	T	1710.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:85,80:0.48:165
chr7	80427297	.	G	A	588.77	.	AC=1;AF=0.500;AN=2;DP=54;set=Intersection	GT:AD:AF:DP	0/1:28,24:0.46:52
chr7	80456841	rs4461841	C	T	6482.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr7	80804928	rs1509912	G	T	2407.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:90,105:0.54:195
chr7	80805175	rs1509911	T	A	1958.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:116,95:0.45:211
chr7	80805263	rs11972689	C	T	4126.77	.	AC=1;AF=0.500;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	0/1:222,204:0.48:426
chr7	80805381	rs11976314	A	C	2482.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:118,129:0.52:247
chr7	80817269	rs327695	T	C	3941.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr7	81339304	rs2074725	A	C	956.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:20,40:0.67:60
chr7	81346685	rs1800793	T	C	5940.77	.	AC=1;AF=0.500;AN=2;DB;DP=605;set=Intersection	GT:AD:AF:DP	0/1:304,296:0.49:600
chr7	81350208	rs12536657	A	G	1027.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:36,45:0.56:81
chr7	81350223	rs10272030	G	A	1028.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:36,47:0.57:83
chr7	81355066	rs2887069	G	A	1543.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:61,66:0.52:127
chr7	81359116	rs5745686	CA	C	1226.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.022;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=0.674;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.52;ReadPosRankSum=0.983;SOR=0.798;set=HC	GT:AD:AF:DP	0/1:67,77:0.53:144
chr7	81372156	rs5745676	A	G	732.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:51,37:0.42:88
chr7	81372452	rs2214826	A	G	215.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:13,10:0.43:23
chr7	81374500	rs4732406	G	C	4102.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr7	81381326	rs5745646	C	T	1463.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:61,64:0.51:125
chr7	81591114	rs72063149	GTAATGATTATAACAGTATATACAATTTCT	G	1464.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.90;QD=43.08;SOR=2.899;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr7	81593454	rs3735517	G	A	8841.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr7	81596813	rs17240387	T	C	259.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr7	81600197	rs37067	A	G	528.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.124;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=2.169;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.02;ReadPosRankSum=0.975;SOR=1.765;set=HC	GT:AD:AF:DP	0/1:22,22:0.50:44
chr7	81603945	rs61006565	AT	A	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.489;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=4.260;MLEAC=1;MLEAF=0.500;MQ=61.07;MQRankSum=-0.887;QD=5.09;ReadPosRankSum=-0.135;SOR=2.833;set=HC	GT:AD:AF:DP	0/1:3,5:0.62:8
chr7	81626356	rs6944326	G	A	5777.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr7	81634822	rs71885491	GA	G	105.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.413;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=1.035;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=0.000;QD=1.14;ReadPosRankSum=-0.145;SOR=0.462;set=HC	GT:AD:AF:DP	0/1:69,24:0.26:93
chr7	81641570	rs4019047	G	GAAAA	1744.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.669;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=1.035;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.000;QD=14.42;ReadPosRankSum=1.393;SOR=0.996;set=HC	GT:AD:AF:DP	0/1:59,62:0.51:121
chr7	81642634	rs37135	A	C	315.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr7	81642949	rs37136	C	T	122.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr7	81693768	rs73703113	T	C	248.73	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:16,12:0.43:28
chr7	82435033	rs12668093	C	T	1569.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:104,77:0.43:181
chr7	82453708	rs2522833	A	C	5832.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr7	82455895	rs2715150	A	G	11080.77	.	AC=2;AF=1.00;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	1/1:4,432:0.99:436
chr7	82475786	rs67293081	TTA	T	685.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr7	82478415	rs2522840	T	G	214.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr7	82497343	rs4628206	T	A	11501.77	.	AC=2;AF=1.00;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	1/1:0,410:1.00:410
chr7	82531887	rs150270529	TATA	T	121.73	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:17,5:0.23:22
chr7	82546282	rs12707531	C	A	414.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:19,17:0.47:36
chr7	82581488	rs10630259	T	TTCA	24776.73	.	AC=2;AF=1.00;AN=2;DB;DP=582;set=Intersection	GT:AD:AF:DP	1/1:0,548:1.00:548
chr7	82581859	rs976714	C	T	2595.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:139,125:0.47:264
chr7	82582846	rs10954696	C	T	2899.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:166,145:0.47:311
chr7	82583609	rs10487648	A	C	5905.77	.	AC=1;AF=0.500;AN=2;DB;DP=551;set=Intersection	GT:AD:AF:DP	0/1:271,272:0.50:543
chr7	82763534	rs149498958	A	AAT,AATATAT	387.76	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=31;set=Intersection	GT:AF:DP	0/1:0.69:26
chr7	82764425	rs2877	C	G	15541.77	.	AC=2;AF=1.00;AN=2;DB;DP=568;set=Intersection	GT:AD:AF:DP	1/1:0,561:1.00:561
chr7	82784017	rs6951239	G	T	3694.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr7	82784833	.	T	TGCTGAGCTGGAGGCTTAGCAGGACCAAGAG	4653.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.373;ClippingRankSum=0.000;DP=394;ExcessHet=3.0103;FS=3.825;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.905;QD=21.45;ReadPosRankSum=-1.073;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:118,99:0.46:217
chr7	82785097	rs61741659	T	C	3569.77	.	AC=1;AF=0.500;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	0/1:180,169:0.48:349
chr7	82785719	rs71074628	T	TA	279.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.167;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=2.481;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.00;ReadPosRankSum=0.201;SOR=0.407;set=HC	GT:AD:AF:DP	0/1:43,27:0.39:70
chr7	82791595	rs7457218	G	C	1485.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:58,64:0.52:122
chr7	83021799	rs375518443	TAAAA	T,TA	5452.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.930;ClippingRankSum=0.000;DB;DP=208;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.05;MQRankSum=0.186;QD=29.63;ReadPosRankSum=-1.575;SOR=1.353;set=HC	GT:AD:AF:DP	1/2:5,84,95:0.46,0.52:184
chr7	83023587	.	TAC	T	13340.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.673;ClippingRankSum=0.000;DP=436;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.05;MQRankSum=0.130;QD=34.38;ReadPosRankSum=-0.195;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:2,386:0.99:388
chr7	83026100	rs150931802	C	CAA	2274.73	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr7	83029280	rs2255906	T	G	1131.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.78;SOR=2.554;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr7	83029639	rs2255820	A	C	2983.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr7	83031907	rs2709930	T	C	3680.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr7	83032187	rs2722976	T	C	1609.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr7	83095955	rs7806439	A	G	6423.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:1,233:1.00:234
chr7	83098714	.	C	CTTTT,CTTTTT	1048.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.764;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.70;MQRankSum=0.464;QD=32.77;ReadPosRankSum=0.896;SOR=1.127;set=HC	GT:AD:AF:DP	1/2:2,19,11:0.59,0.34:32
chr7	83119676	rs73707854	C	T	606.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:15,24:0.62:39
chr7	83246043	rs67160899	CT	C	257.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.351;ClippingRankSum=0.000;DB;DP=310;ExcessHet=3.0103;FS=3.422;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=0.000;QD=1.09;ReadPosRankSum=1.433;SOR=0.438;set=HC	GT:AD:AF:DP	0/1:178,59:0.25:237
chr7	83277699	rs372307036	CT	C	134.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.433;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.92;ReadPosRankSum=0.977;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:108,38:0.26:146
chr7	83631376	rs3735513	T	C	2162.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:128,112:0.47:240
chr7	83631414	rs10250165	A	T	1254.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:82,59:0.42:141
chr7	83631449	rs139150410	CAAAG	C	968.73	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:39,28:0.42:67
chr7	83634713	rs7804122	A	G	3757.77	.	AC=1;AF=0.500;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	0/1:208,191:0.48:399
chr7	83643681	rs2272222	A	T	959.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.758;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=5.468;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.63;ReadPosRankSum=0.942;SOR=1.542;set=HC	GT:AD:AF:DP	0/1:49,27:0.36:76
chr7	83643687	rs2272221	G	A	918.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.224;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=3.962;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.32;ReadPosRankSum=0.943;SOR=1.320;set=HC	GT:AD:AF:DP	0/1:43,26:0.38:69
chr7	83739762	rs1990044	T	C	3479.77	.	AC=1;AF=0.500;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	0/1:154,165:0.52:319
chr7	83740015	rs1990045	T	C	1958.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.594;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=3.394;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.99;ReadPosRankSum=-0.637;SOR=1.015;set=HC	GT:AD:AF:DP	0/1:58,82:0.59:140
chr7	83764309	rs17241389	C	G	1778.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:108,83:0.43:191
chr7	83823739	rs191868182	G	C	2600.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:82,110:0.57:192
chr7	84628989	rs7800072	T	G	6723.77	.	AC=1;AF=0.500;AN=2;DB;DP=666;set=Intersection	GT:AD:AF:DP	0/1:348,313:0.47:661
chr7	84644346	rs6468008	C	G	1119.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:75,53:0.41:128
chr7	84644500	rs17559084	C	T	3043.77	.	AC=1;AF=0.500;AN=2;DB;DP=439;set=Intersection	GT:AD:AF:DP	0/1:275,160:0.37:435
chr7	84644666	rs17639600	G	T	816.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:27,33:0.55:60
chr7	84647477	rs7780132	C	T	684.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:38,33:0.46:71
chr7	84684961	rs199946932	CATATATATATATATAT	C	351.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.092;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=2.363;MLEAC=1;MLEAF=0.500;MQ=62.28;MQRankSum=1.290;QD=25.12;ReadPosRankSum=-0.085;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:4,10:0.71:14
chr7	86274196	rs274623	T	G	4357.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:1,148:0.99:149
chr7	86536849	.	CAA	C	371.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.445;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.49;MQRankSum=1.471;QD=8.85;ReadPosRankSum=-0.089;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:23,19:0.45:42
chr7	86542455	rs35895874	C	T	1937.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:90,84:0.48:174
chr7	86544248	rs1029367	C	T	699.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:28,30:0.52:58
chr7	86571235	rs2373361	C	A	1277.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:68,60:0.47:128
chr7	86577346	rs1557665	A	T	1348.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:58,57:0.50:115
chr7	86594379	rs6976741	G	A	5328.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.832;ClippingRankSum=0.000;DB;DP=250;ExcessHet=3.0103;FS=0.488;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.84;ReadPosRankSum=-1.996;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:104,140:0.57:244
chr7	86594383	rs6958716	T	C	5306.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.788;ClippingRankSum=0.000;DB;DP=237;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.97;ReadPosRankSum=-1.725;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:100,131:0.57:231
chr7	86594423	rs6976877	G	A	1758.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:70,79:0.53:149
chr7	86781423	rs2286267	G	A	3569.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr7	86795947	rs3058402	TAG	T	11571.73	.	AC=2;AF=1.00;AN=2;DB;DP=285;MQ=60.08;set=Intersection	GT:AD:AF:DP	1/1:2,261:0.99:263
chr7	86800351	rs3747807	A	G	14218.77	.	AC=2;AF=1.00;AN=2;DB;DP=562;set=Intersection	GT:AD:AF:DP	1/1:1,550:1.00:551
chr7	86814122	.	C	CT	71.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.472;ClippingRankSum=0.000;DP=310;ExcessHet=3.0103;FS=0.643;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=0.000;QD=0.25;ReadPosRankSum=-0.127;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:243,47:0.16:290
chr7	86820459	rs1558050	G	A	3350.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr7	86978347	rs802037	C	A	877.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:52,46:0.47:98
chr7	86983693	rs372348674	G	C	1848.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:80,86:0.52:166
chr7	86983715	rs7808249	A	G	2181.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:94,102:0.52:196
chr7	86998842	rs6966140	G	A	6731.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr7	86998936	rs35374737	AT	A	640.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:3,36:0.92:39
chr7	87005287	rs59190666	C	CT,CTT	1772.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.272;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=12.48;ReadPosRankSum=1.257;SOR=0.697;set=HC	GT:AD:AF:DP	1/2:26,82,34:0.58,0.24:142
chr7	87006567	rs802042	G	C	518.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr7	87011349	rs31630	G	A	4103.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr7	87022024	rs31644	G	C	10353.77	.	AC=2;AF=1.00;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	1/1:0,373:1.00:373
chr7	87027419	rs5885580	C	CT	419.79	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.929;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=13.99;ReadPosRankSum=0.726;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:4,26:0.87:30
chr7	87031292	.	G	C	795.77	.	AC=1;AF=0.500;AN=2;DP=63;set=Intersection	GT:AD:AF:DP	0/1:26,36:0.58:62
chr7	87032613	rs31653	A	G	2173.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr7	87053150	rs31667	A	G	5715.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:2,223:0.99:225
chr7	87053206	rs31668	G	A	9808.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:0,363:1.00:363
chr7	87056260	rs10647775	A	AGT,AGTGT	1166.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.558;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.09;MQRankSum=0.485;QD=20.83;ReadPosRankSum=0.833;SOR=0.849;set=HC	GT:AD:AF:DP	1/2:8,26,22:0.46,0.39:56
chr7	87069758	rs31675	T	C	5968.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr7	87082292	rs1202283	G	A	9709.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:1,362:1.00:363
chr7	87133851	rs10244116	AT	GC	1416.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;JOINED;set=Intersection	GT:AD:AF:DP	0/1:28,37:0.57:65
chr7	87168749	rs4728699	C	T	2957.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:2,112:0.98:114
chr7	87215114	rs1211152	A	C	1228.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr7	87229501	rs2214102	T	C	7722.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr7	87506099	rs191964853	A	C	2883.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:130,138:0.51:268
chr7	87563975	rs57360340	AT	A	495.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.889;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=1.868;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=1.997;QD=3.73;ReadPosRankSum=-2.734;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:67,66:0.50:133
chr7	87704799	rs3085476	G	GAGAA	557.73	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:4,17:0.81:21
chr7	87704801	rs200349524	G	GAA	42.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.046;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.71;MQRankSum=-0.354;QD=1.94;ReadPosRankSum=0.812;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:18,4:0.18:22
chr7	87745903	rs2301998	A	T	4434.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr7	87759588	rs200875448	A	AT	362.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.428;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=1.886;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.30;ReadPosRankSum=0.880;SOR=0.406;set=HC	GT:AD:AF:DP	0/1:13,26:0.67:39
chr7	87765476	rs12538777	C	T	953.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:51,44:0.46:95
chr7	87774727	rs3761806	T	C	2326.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:103,106:0.51:209
chr7	87778503	rs2301999	T	A	892.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:34,35:0.51:69
chr7	87780704	rs12533109	G	C	4564.77	.	AC=1;AF=0.500;AN=2;DB;DP=510;set=Intersection	GT:AD:AF:DP	0/1:281,218:0.44:499
chr7	87785405	rs2072213	T	C	772.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:34,36:0.51:70
chr7	87795282	rs17150304	C	G	3242.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:93,140:0.60:233
chr7	87795311	rs145055422	A	G	2395.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:51,102:0.67:153
chr7	87800808	rs11332301	AG	A	1146.73	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:53,39:0.42:92
chr7	87810955	rs2240467	T	C	5128.77	.	AC=1;AF=0.500;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	0/1:212,242:0.53:454
chr7	87813635	rs3789240	C	T	2369.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:131,117:0.47:248
chr7	87813766	rs3789239	A	C	2516.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:105,115:0.52:220
chr7	87822534	rs182800008	G	A	7231.77	.	AC=1;AF=0.500;AN=2;DB;DP=734;set=Intersection	GT:AD:AF:DP	0/1:366,359:0.50:725
chr7	87840158	rs139265565	G	GA	560.73	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:40,30:0.43:70
chr7	87844303	rs11760375	A	G	3720.77	.	AC=1;AF=0.500;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	0/1:188,185:0.50:373
chr7	87846511	rs73705607	T	C	129.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.297;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.19;ReadPosRankSum=1.577;SOR=0.336;set=HC	GT:AD:AF:DP	0/1:21,10:0.32:31
chr7	87913361	rs1981529	C	T	4069.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr7	88389420	rs1858848	A	G	5801.77	.	AC=1;AF=0.500;AN=2;DB;DP=627;set=Intersection	GT:AD:AF:DP	0/1:328,294:0.47:622
chr7	88423433	rs72289236	G	GT	693.73	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:38,40:0.51:78
chr7	88423881	rs2293583	T	C	3303.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:134,144:0.52:278
chr7	88424365	rs35996371	CAA	C	360.73	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:16,16:0.50:32
chr7	88847369	rs17167529	C	T	422.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:21,17:0.45:38
chr7	88847450	rs199973381	TA	T	1293.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.272;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=5.106;MLEAC=1;MLEAF=0.500;MQ=64.85;MQRankSum=9.756;QD=12.94;ReadPosRankSum=0.804;SOR=0.341;set=HC	GT:AD:AF:DP	0/1:52,48:0.48:100
chr7	88847451	rs4140973	A	T	1151.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:48,52:0.52:100
chr7	88847452	.	TG	T	910	.	AC=1;AF=0.500;AN=2;BRF=0.38;FR=0.5000;HP=1;HapScore=2;MGOF=4;MMLQ=28;MQ=64.48;NF=7;NR=18;PP=910;QD=38.12;SC=CCAACATTTATGTATTTTTTC;SbPval=0.92;Source=Platypus;TC=55;TCF=23;TCR=32;TR=25;WE=88847460;WS=88847441;set=Platypus	GT:AD:AF:DP	0/1:30,25:0.45:55
chr7	88847453	rs4140974	G	T	1302.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.499;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=5.015;MLEAC=1;MLEAF=0.500;MQ=64.80;MQRankSum=9.858;QD=12.77;ReadPosRankSum=0.956;SOR=0.354;set=HC	GT:AD:AF:DP	0/1:54,48:0.47:102
chr7	89783895	rs7799132	C	T	798.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:41,41:0.50:82
chr7	89792250	rs39286	A	C	3677.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr7	89797144	rs259136	G	T	2841.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr7	89854446	rs194520	T	G	4731.77	.	AC=1;AF=0.500;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	0/1:204,221:0.52:425
chr7	89856608	rs110360	C	T	4962.77	.	AC=1;AF=0.500;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	0/1:221,230:0.51:451
chr7	89856644	rs2016903	C	T	4657.77	.	AC=1;AF=0.500;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	0/1:214,220:0.51:434
chr7	89861832	rs194524	G	A	1520.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:76,76:0.50:152
chr7	89861890	rs194525	G	T	1458.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:88,76:0.46:164
chr7	89861942	rs194526	C	T	1169.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:79,59:0.43:138
chr7	89861957	rs17621350	G	A	996.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:69,48:0.41:117
chr7	89867446	rs35403811	T	TCTG	6965.73	.	AC=1;AF=0.500;AN=2;DB;DP=444;set=Intersection	GT:AD:AF:DP	0/1:187,184:0.50:371
chr7	89887587	rs11771963	G	T	198.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:3,9:0.75:12
chr7	89901039	rs10280053	A	C	1208.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:71,55:0.44:126
chr7	89912301	rs1029365	G	A	3963.77	.	AC=1;AF=0.500;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	0/1:187,201:0.52:388
chr7	89927191	rs6465256	T	A	1113.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:66,57:0.46:123
chr7	89937027	rs35441907	CA	C	464.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.843;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.52;MQRankSum=1.211;QD=8.01;ReadPosRankSum=0.115;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:22,36:0.62:58
chr7	89938588	rs7803620	C	G	488.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.178;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=6.209;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.55;ReadPosRankSum=-0.290;SOR=1.393;set=HC	GT:AD:AF:DP	0/1:59,29:0.33:88
chr7	89938680	rs1134956	C	T	762.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.894;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=1.621;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.63;ReadPosRankSum=-1.523;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:56,44:0.44:100
chr7	89939340	rs146337411	TG	T	3186.73	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:95,97:0.51:192
chr7	89969831	rs42637	A	G	2696.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:101,133:0.57:234
chr7	89969878	rs2285399	A	G	2379.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:85,114:0.57:199
chr7	89971556	rs1557650	A	C	968.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:30,45:0.60:75
chr7	89983808	rs42663	T	G	1125.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:65,57:0.47:122
chr7	89984409	rs42664	A	G	670.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:29,33:0.53:62
chr7	90001496	rs35001814	G	C	1712.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:54,47:0.47:101
chr7	90001514	rs150172644	T	C	1690.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:53,46:0.46:99
chr7	90001685	rs73213235	C	G	136.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.025;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=5.332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.40;ReadPosRankSum=-0.124;SOR=0.544;set=HC	GT:AD:AF:DP	0/1:5,7:0.58:12
chr7	90014111	rs9886362	G	T	1265.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr7	90014408	rs17863999	G	A	3752.77	.	AC=1;AF=0.500;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	0/1:191,182:0.49:373
chr7	90225928	rs7782773	T	C	9023.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;MQ=60.03;set=Intersection	GT:AD:AF:DP	1/1:0,339:1.00:339
chr7	90233618	rs6465273	G	A	2094.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr7	90356175	rs10240049	T	C	6658.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr7	90492639	rs73222758	A	C	1210.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr7	90547119	rs78194207	G	A	5051.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr7	90742137	rs112066860	G	GGT	488.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.447;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=2.410;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.75;ReadPosRankSum=-1.023;SOR=1.170;set=HC	GT:AD:AF:DP	0/1:60,25:0.29:85
chr7	90742168	rs56973703	G	GGA,GGAGA	1585.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=77;set=Intersection	GT:AF:DP	1/2:0.17,0.81:42
chr7	90747315	rs803167	A	T	1542.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:2,78:0.97:80
chr7	90894102	rs2232158	C	G	329.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr7	90894459	rs139480179	A	ACCG	823.73	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:34,32:0.48:66
chr7	91503228	rs10266424	C	T	5230.77	.	AC=1;AF=0.500;AN=2;DB;DP=536;set=Intersection	GT:AD:AF:DP	0/1:284,249:0.47:533
chr7	91570290	rs4727267	G	C	19625.77	.	AC=2;AF=1.00;AN=2;DB;DP=733;set=Intersection	GT:AD:AF:DP	1/1:0,713:1.00:713
chr7	91622508	.	C	CT	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.412;ClippingRankSum=0.000;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.59;MQRankSum=3.233;QD=0.77;ReadPosRankSum=-1.635;SOR=0.798;set=HC	GT:AD:AF:DP	0/1:36,9:0.20:45
chr7	91669960	.	GTT	G	366.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.829;ClippingRankSum=0.000;DP=133;ExcessHet=3.0103;FS=1.054;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.439;QD=3.03;ReadPosRankSum=-0.479;SOR=0.489;set=HC	GT:AD:AF:DP	0/1:93,28:0.23:121
chr7	91708898	rs35759833	A	G	7853.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr7	91714092	.	AT	A	79.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.048;ClippingRankSum=0.000;DP=221;ExcessHet=3.0103;FS=2.463;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=2.029;QD=0.39;ReadPosRankSum=-1.069;SOR=0.940;set=HC	GT:AD:AF:DP	0/1:167,37:0.18:204
chr7	91714911	rs1063242	C	T	5804.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr7	91761305	rs66673218	CA	C	953.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr7	91830048	.	T	C	822.77	.	AC=1;AF=0.500;AN=2;DP=96;set=Intersection	GT:AD:AF:DP	0/1:49,42:0.46:91
chr7	92016022	rs62467849	T	C	7035.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr7	92027187	rs38793	A	G	10503.77	.	AC=2;AF=1.00;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	1/1:2,383:0.99:385
chr7	92028039	rs38794	C	A	9081.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	1/1:1,334:1.00:335
chr7	92077203	rs10281879	G	A	2169.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:102,95:0.48:197
chr7	92077387	rs6963580	C	G	609.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:17,28:0.62:45
chr7	92085763	rs34768413	C	T	5838.77	.	AC=1;AF=0.500;AN=2;DB;DP=661;set=Intersection	GT:AD:AF:DP	0/1:362,292:0.45:654
chr7	92129161	rs5885806	CA	C	2212.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.063;ClippingRankSum=0.000;DB;DP=366;ExcessHet=3.0103;FS=2.986;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=2.031;QD=7.53;ReadPosRankSum=-2.602;SOR=0.510;set=HC	GT:AD:AF:DP	0/1:124,170:0.58:294
chr7	92131289	rs10278857	G	T	5921.77	.	AC=1;AF=0.500;AN=2;DB;DP=579;set=Intersection	GT:AD:AF:DP	0/1:285,289:0.50:574
chr7	92135686	rs10236856	C	T	3171.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:157,150:0.49:307
chr7	92135802	rs6465359	T	A	828.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:38,35:0.48:73
chr7	92136499	rs151002946	T	TA	586.73	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:26,32:0.55:58
chr7	92136559	rs79143453	CT	C	122.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.382;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.46;ReadPosRankSum=0.165;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:8,11:0.58:19
chr7	92140397	rs2111200	C	T	257.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:34,15:0.31:49
chr7	92140455	rs201427888	CTT	C	195.73	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:8,11:0.58:19
chr7	92147584	rs38809	C	T	970.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:50,45:0.47:95
chr7	92157802	rs12386703	G	C	3085.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:93,148:0.61:241
chr7	92166040	rs6465360	G	C	138.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr7	92244422	rs42039	C	T	665.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:37,30:0.45:67
chr7	92244630	rs3731387	TATACA	T	1279.73	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:51,35:0.41:86
chr7	92247333	rs42043	A	G	1718.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:142,88:0.38:230
chr7	92252203	rs42046	C	G	559.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:68,31:0.31:99
chr7	92855628	rs200511300	T	TA	256.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.132;ClippingRankSum=0.000;DB;DP=287;ExcessHet=3.0103;FS=2.160;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=0.000;QD=0.94;ReadPosRankSum=1.510;SOR=0.503;set=HC	GT:AD:AF:DP	0/1:219,54:0.20:273
chr7	92875594	rs373372521	AAC	A	148.73	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:17,7:0.29:24
chr7	92886812	rs722263	A	G	2221.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr7	92926605	rs17710854	C	T	591.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr7	92935272	rs200076275	A	T	4069.77	.	AC=1;AF=0.500;AN=2;DB;DP=465;set=Intersection	GT:AD:AF:DP	0/1:247,210:0.46:457
chr7	92963242	rs4729079	A	G	603.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr7	92970847	rs2106432	C	T	4711.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr7	92985252	rs2374639	T	C	3036.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:2,115:0.98:117
chr7	92987445	rs2285505	T	C	696.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:45,32:0.42:77
chr7	93091238	rs1108233	G	A	195.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:15,11:0.42:26
chr7	93091485	rs3802052	T	C	655.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.544;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.26;ReadPosRankSum=0.802;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:27,19:0.41:46
chr7	93091488	rs3802051	C	T	625.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.346;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=1.339;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.55;ReadPosRankSum=1.429;SOR=1.015;set=HC	GT:AD:AF:DP	0/1:26,17:0.40:43
chr7	93098135	rs139734304	T	TAAACAAACAAAC	3698.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.302;ClippingRankSum=0.000;DB;DP=255;ExcessHet=3.0103;FS=0.573;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=0.000;QD=19.57;ReadPosRankSum=0.948;SOR=0.791;set=HC	GT:AD:AF:DP	0/1:93,96:0.51:189
chr7	93107093	rs2074120	A	C	2466.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:80,102:0.56:182
chr7	93116138	rs9691220	G	A	2272.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:75,104:0.58:179
chr7	93116299	rs2301680	A	G	947.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:60,46:0.43:106
chr7	93116391	rs3214144	A	AT	241.73	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:16,14:0.47:30
chr7	93346095	rs2027984	C	A	915.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr7	93515993	rs4517	T	G	219.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:11,10:0.48:21
chr7	93540348	rs2798	T	G	57.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr7	93551428	rs4262	C	T	1682.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:60,73:0.55:133
chr7	94033800	rs406226	A	G	145.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:11,7:0.39:18
chr7	94034848	rs810687	A	G	551.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:32,27:0.46:59
chr7	94038934	rs42518	C	T	11477.77	.	AC=2;AF=1.00;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	1/1:0,430:1.00:430
chr7	94039032	rs42519	C	T	9766.77	.	AC=2;AF=1.00;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	1/1:0,368:1.00:368
chr7	94039187	rs2521206	A	G	1008.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:51,47:0.48:98
chr7	94039900	rs42520	C	T	300.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr7	94040133	rs389328	T	A	1363.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr7	94040287	rs34026686	G	A	2626.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:156,138:0.47:294
chr7	94040345	rs35587403	GT	G	1035.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.919;ClippingRankSum=0.000;DB;DP=219;ExcessHet=3.0103;FS=1.518;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.28;ReadPosRankSum=-1.579;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:70,95:0.58:165
chr7	94043239	rs42524	C	G	7563.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr7	94043274	rs421587	A	G	3219.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:147,142:0.49:289
chr7	94043493	rs2301643	G	A	6655.77	.	AC=1;AF=0.500;AN=2;DB;DP=667;set=Intersection	GT:AD:AF:DP	0/1:329,326:0.50:655
chr7	94045576	rs42526	G	A	239.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr7	94047903	rs3216182	AT	A	836.73	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:51,56:0.52:107
chr7	94055885	rs62464631	G	A	3452.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:150,163:0.52:313
chr7	94055933	rs13240759	T	C	1464.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:92,69:0.43:161
chr7	94056006	rs400218	A	G	1390.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr7	94056216	rs7805430	G	A	235.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:15,12:0.44:27
chr7	94056244	rs413826	C	G	1673.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr7	94056251	rs199900944	GAA	G	1795.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.22;QD=36.65;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr7	94056349	rs1800248	C	T	919.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:72,47:0.39:119
chr7	94058395	rs6465412	T	C	329.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.820;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.42;MQRankSum=-1.090;QD=12.68;ReadPosRankSum=0.858;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:11,15:0.58:26
chr7	94058410	rs11374490	C	CT	1157.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.33;QD=36.18;SOR=1.681;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr7	94058420	rs34888194	C	CT	1268.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.243;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=10.951;MLEAC=2;MLEAF=1.000;MQ=60.23;MQRankSum=0.356;QD=28.19;ReadPosRankSum=1.776;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:3,42:0.93:45
chr7	94139580	rs2301645	G	T	459.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:17,18:0.51:35
chr7	94146975	rs2301646	T	G	2913.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr7	94157585	rs57770781	CT	C	931.19	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:9,64:0.88:73
chr7	94174854	rs3793326	T	C	2255.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr7	94175073	rs3793325	T	C	878.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr7	94176627	rs6958243	G	C	545.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr7	94178749	rs10272136	T	C	1492.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr7	94178761	rs7801436	C	T	1824.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr7	94182373	rs6465417	A	G	2072.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr7	94183993	rs10280843	G	A	1518.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr7	94184691	rs10238176	T	A	909.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr7	94227276	rs10247562	T	G	374.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:24,19:0.44:43
chr7	94227319	.	TA	T	157.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.982;ClippingRankSum=0.000;DP=105;ExcessHet=3.0103;FS=0.873;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=0.657;QD=1.52;ReadPosRankSum=-1.415;SOR=0.803;set=HC	GT:AD:AF:DP	0/1:78,26:0.25:104
chr7	94227509	rs10232398	G	A	435.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:18,19:0.51:37
chr7	94247971	rs6465421	C	A	506.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:23,21:0.48:44
chr7	94740524	rs11379075	G	GT	187.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.329;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=2.052;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=2.387;QD=1.59;ReadPosRankSum=-0.685;SOR=0.937;set=HC	GT:AD:AF:DP	0/1:90,28:0.24:118
chr7	94879225	rs12690919	A	T	463.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:17,19:0.53:36
chr7	94897801	rs854522	T	C	799.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:21,35:0.62:56
chr7	94898811	rs854524	G	A	4047.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:108,179:0.62:287
chr7	94937446	rs662	T	C	6629.77	.	AC=1;AF=0.500;AN=2;DB;DP=773;set=Intersection	GT:AD:AF:DP	0/1:421,340:0.45:761
chr7	94941038	rs1157745	G	T	364.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:21,16:0.43:37
chr7	94944923	rs854556	C	T	1122.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:38,50:0.57:88
chr7	94946084	rs854560	A	T	5590.77	.	AC=1;AF=0.500;AN=2;DB;DP=614;set=Intersection	GT:AD:AF:DP	0/1:328,281:0.46:609
chr7	94946255	rs3917498	G	T	761.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:33,31:0.48:64
chr7	94947799	rs2074351	G	A	1721.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:88,78:0.47:166
chr7	94953895	rs705379	G	A	536.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.890;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.46;ReadPosRankSum=0.041;SOR=0.817;set=HC	GT:AD:AF:DP	0/1:43,29:0.40:72
chr7	94953913	rs705380	G	C	1292.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr7	94989255	.	CT	C	602.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.138;ClippingRankSum=0.000;DP=151;ExcessHet=3.0103;FS=1.638;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.206;QD=4.16;ReadPosRankSum=0.593;SOR=0.894;set=HC	GT:AD:AF:DP	0/1:74,71:0.49:145
chr7	94992244	rs10953143	T	C	327.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:21,14:0.40:35
chr7	94996913	rs3757708	T	G	116.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:5,5:0.50:10
chr7	95001555	rs1053275	C	T	4292.77	.	AC=1;AF=0.500;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	0/1:239,217:0.48:456
chr7	95019355	rs6977389	G	A	1821.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:59,81:0.58:140
chr7	95024046	rs11970910	A	G	5494.77	.	AC=1;AF=0.500;AN=2;DB;DP=584;set=Intersection	GT:AD:AF:DP	0/1:316,268:0.46:584
chr7	95025600	rs13226149	G	A	6699.77	.	AC=1;AF=0.500;AN=2;DB;DP=716;set=Intersection	GT:AD:AF:DP	0/1:388,325:0.46:713
chr7	95034775	rs7493	G	C	3807.77	.	AC=1;AF=0.500;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	0/1:194,181:0.48:375
chr7	95035582	rs3735586	A	T	1458.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:73,70:0.49:143
chr7	95039445	rs2286232	C	T	1204.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.641;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=4.105;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.93;ReadPosRankSum=0.990;SOR=0.497;set=HC	GT:AD:AF:DP	0/1:122,81:0.40:203
chr7	95041016	rs12026	G	C	1891.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:91,91:0.50:182
chr7	95041542	rs2068604	G	T	2080.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:85,93:0.52:178
chr7	95054007	rs12704795	T	G	115.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:5,5:0.50:10
chr7	95125050	rs10577347	CTT	C	1559.76	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.773;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.039;QD=12.00;ReadPosRankSum=-0.907;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:51,79:0.61:130
chr7	95216262	rs4729201	A	G	744.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:42,31:0.42:73
chr7	95216421	rs11541299	G	A	4924.77	.	AC=1;AF=0.500;AN=2;DB;DP=498;set=Intersection	GT:AD:AF:DP	0/1:253,244:0.49:497
chr7	95216697	rs17626204	C	T	2535.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:143,121:0.46:264
chr7	95217194	rs200157695	G	GT	1044.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.119;ClippingRankSum=0.000;DB;DP=217;ExcessHet=3.0103;FS=3.137;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.15;ReadPosRankSum=-0.009;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:85,85:0.50:170
chr7	95221269	rs2301630	C	T	705.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:27,30:0.53:57
chr7	95221927	rs200624704	CA	C	1660.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.331;ClippingRankSum=0.000;DB;DP=244;ExcessHet=3.0103;FS=0.510;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.390;QD=8.10;ReadPosRankSum=1.103;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:100,105:0.51:205
chr7	95442690	rs35397709	T	TA	343.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.581;ClippingRankSum=0.000;DB;DP=288;ExcessHet=3.0103;FS=6.896;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.37;ReadPosRankSum=-0.305;SOR=0.365;set=HC	GT:AD:AF:DP	0/1:195,56:0.22:251
chr7	95447785	.	A	AT	115.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DP=73;ExcessHet=3.0103;FS=1.263;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.96;ReadPosRankSum=2.775;SOR=1.013;set=HC	GT:AD:AF:DP	0/1:41,18:0.31:59
chr7	95614396	rs55710908	G	A	1056.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:37,43:0.54:80
chr7	95668664	rs1048666	C	A	2306.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:170,122:0.42:292
chr7	95709602	rs42083	C	T	209.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:20,10:0.33:30
chr7	95709666	rs42082	C	A	842.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:58,44:0.43:102
chr7	95727014	rs7794344	T	C	1498.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr7	95800820	rs2301629	T	C	2479.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:102,112:0.52:214
chr7	95813831	rs6962870	C	T	1498.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:61,60:0.50:121
chr7	95818444	rs2073976	C	T	366.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:20,18:0.47:38
chr7	95818475	rs6957286	G	T	1710.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr7	95818864	rs11335226	CA	C,CAA	712.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.666;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=2.695;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.27;MQRankSum=0.846;QD=7.42;ReadPosRankSum=0.491;SOR=1.044;set=HC	GT:AD:AF:DP	1/2:13,62,21:0.65,0.22:96
chr7	95864108	rs6957975	T	C	2581.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:100,116:0.54:216
chr7	96113233	.	A	C	2202.77	.	AC=1;AF=0.500;AN=2;DP=207;set=Intersection	GT:AD:AF:DP	0/1:99,106:0.52:205
chr7	96338929	rs10250534	A	G	12968.77	.	AC=2;AF=1.00;AN=2;DB;DP=495;set=Intersection	GT:AD:AF:DP	1/1:0,489:1.00:489
chr7	96635155	.	CTT	C	331.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.627;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=5.972;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.85;ReadPosRankSum=0.532;SOR=1.598;set=HC	GT:AD:AF:DP	0/1:11,17:0.61:28
chr7	96635420	.	A	AGCC	3414.73	.	AC=1;AF=0.500;AN=2;DP=521;set=Intersection	GT:AD:AF:DP	0/1:146,151:0.51:297
chr7	96649884	rs3214218	A	AG	228.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:2,10:0.83:12
chr7	97361784	rs2072100	C	T	1339.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:48,49:0.51:97
chr7	97369341	rs62499562	G	A	289.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:38,15:0.28:53
chr7	97481812	rs10486011	C	T	886.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:71,48:0.40:119
chr7	97487730	rs41278830	G	A	3224.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:142,168:0.54:310
chr7	97488146	rs36021744	G	GT	1287.73	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:52,68:0.57:120
chr7	97488350	rs11773753	A	G	832.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:30,33:0.52:63
chr7	97488569	rs1049674	A	T	2134.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:130,100:0.43:230
chr7	97493437	rs2302088	A	T	285.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:19,19:0.50:38
chr7	97593662	rs11982005	C	T	1468.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;MQ=59.99;set=Intersection	GT:AD:AF:DP	0/1:86,74:0.46:160
chr7	97599296	rs7784048	C	T	426.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:26,18:0.41:44
chr7	97619528	.	ATT	A	271.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.498;ClippingRankSum=0.000;DP=138;ExcessHet=3.0103;FS=1.570;MLEAC=1;MLEAF=0.500;MQ=58.94;MQRankSum=0.931;QD=3.48;ReadPosRankSum=-0.154;SOR=0.363;set=HC	GT:AD:AF:DP	0/1:55,23:0.29:78
chr7	97784061	rs17435590	T	C	10730.77	.	AC=2;AF=1.00;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	1/1:0,407:1.00:407
chr7	97816327	rs6465657	C	T	10299.77	.	AC=2;AF=1.00;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	1/1:0,375:1.00:375
chr7	97820868	rs11451148	C	CA	2648.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.537;ClippingRankSum=0.000;DB;DP=332;ExcessHet=3.0103;FS=0.590;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=1.566;QD=8.92;ReadPosRankSum=0.847;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:97,200:0.67:297
chr7	97822115	rs11765552	T	A	17703.77	.	AC=2;AF=1.00;AN=2;DB;DP=667;set=Intersection	GT:AD:AF:DP	1/1:1,657:1.00:658
chr7	97822210	rs3801294	G	A	20322.77	.	AC=2;AF=1.00;AN=2;DB;DP=773;set=Intersection	GT:AD:AF:DP	1/1:1,749:1.00:750
chr7	97846856	rs11471393	CGAG	C	6043.73	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr7	97851109	rs4729416	T	C	1690.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr7	97852899	rs2270595	A	G	5014.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr7	97862097	rs139511001	GA	G	310.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.635;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=1.441;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.718;QD=1.59;ReadPosRankSum=-0.810;SOR=0.532;set=HC	GT:AD:AF:DP	0/1:142,53:0.27:195
chr7	97874143	rs3816944	C	A	10012.77	.	AC=2;AF=1.00;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	1/1:0,347:1.00:347
chr7	97911618	rs111849767	G	A	8478.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr7	97920270	rs7778015	T	C	2060.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.85;SOR=1.547;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr7	97921834	rs6465664	A	G	1852.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr7	97922773	rs12873	T	C	1069.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr7	97922851	rs12728	C	T	3886.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr7	97922875	rs13008	G	A	4761.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr7	97933601	rs1045916	C	T	8934.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:0,336:1.00:336
chr7	97935671	rs13232181	C	G	7893.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:1,274:1.00:275
chr7	97937258	rs6465666	T	C	15215.77	.	AC=2;AF=1.00;AN=2;DB;DP=564;set=Intersection	GT:AD:AF:DP	1/1:0,552:1.00:552
chr7	97939975	.	G	GT	1263	.	AC=1;AF=0.500;AN=2;BRF=0.41;FR=0.5000;HP=13;HapScore=1;MGOF=20;MMLQ=22;MQ=60.0;NF=0;NR=20;PP=1263;QD=63.45;SC=TCCCAAGGCTGTTTTTTTTTT;SbPval=1.0;Source=Platypus;TC=49;TCF=2;TCR=47;TR=20;WE=97939983;WS=97939965;set=Platypus	GT:AD:AF:DP	0/1:29,20:0.41:49
chr7	97939998	rs139666268	C	CTATTTATT	1264.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:1,29:0.97:30
chr7	97944744	rs2107716	G	A	6129.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr7	97944931	.	A	AAAT,AAATAAT	1307	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.49;FR=0.5000,0.5000;HP=12;HapScore=1;MGOF=13;MMLQ=28;MQ=60.0;NF=7,7;NR=28,28;PP=154,1307;QD=4.54285714286;SC=CATACTAAAAAAAAAAAAATA;SbPval=0.48;Source=Platypus;TC=59;TCF=11;TCR=48;TR=35,35;WE=97944945;WS=97944918;set=Platypus	GT:AF:DP	0/1:0.59:59
chr7	97944933	rs11385557	A	AT	3056.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.769;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=36.83;ReadPosRankSum=1.532;SOR=0.881;set=HC	GT:AD:AF:DP	1/1:4,79:0.95:83
chr7	97944935	rs11385558	A	AT	3058.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.691;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=36.85;ReadPosRankSum=1.627;SOR=0.881;set=HC	GT:AD:AF:DP	1/1:4,79:0.95:83
chr7	97944937	rs10647784	A	AT,ATAAT	4665.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=60.59;SOR=0.859;set=HC	GT:AD:AF:DP	1/2:0,10,67:0.13,0.87:77
chr7	97944986	rs6963210	G	A	1593.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr7	97991792	rs3801257	A	G	5016.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr7	98460824	rs10238224	C	A	14896.77	.	AC=2;AF=1.00;AN=2;DB;DP=573;set=Intersection	GT:AD:AF:DP	1/1:0,558:1.00:558
chr7	98461062	rs1548622	G	A	4237.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr7	98479194	.	CA	C	67.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.816;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.82;ReadPosRankSum=0.445;SOR=1.051;set=HC	GT:AD:AF:DP	0/1:14,10:0.42:24
chr7	98495299	rs35409546	G	GTT	2387.73	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.00;QD=37.31;SOR=2.256;set=HC	GT:AD:AF:DP	1/1:4,60:0.94:64
chr7	98495304	rs56294747	G	T	3396.73	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.95;QD=43.55;SOR=2.041;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr7	98500956	rs7777927	C	T	5171.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr7	98503707	rs3214239	TG	T	3497.73	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr7	98504019	rs146905235	TTTTTGTTTTA	T	442.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:50,15:0.23:65
chr7	98504025	rs139837317	TTTTATTTATTTA	T	512.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:43,16:0.27:59
chr7	98506642	.	AT	A	272.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.288;ClippingRankSum=0.000;DP=165;ExcessHet=3.0103;FS=2.754;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.93;ReadPosRankSum=-1.378;SOR=1.251;set=HC	GT:AD:AF:DP	0/1:50,43:0.46:93
chr7	98513300	rs1859662	C	T	2817.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr7	98522627	.	C	CA	88.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.032;ClippingRankSum=0.000;DP=149;ExcessHet=3.0103;FS=1.056;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.891;QD=0.65;ReadPosRankSum=0.272;SOR=0.466;set=HC	GT:AD:AF:DP	0/1:110,26:0.19:136
chr7	98550654	rs66469618	TTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG	T	5740.73	.	AC=2;AF=1.00;AN=2;DB;DP=166;MQ=60.07;set=Intersection	GT:AD:AF:DP	1/1:1,139:0.99:140
chr7	98553739	rs3214240	T	TC	893.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr7	98558880	rs160384	G	C	10494.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	1/1:0,377:1.00:377
chr7	98562162	rs148436277	A	C	2980.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:143,132:0.48:275
chr7	98564778	.	G	T	4591.77	.	AC=1;AF=0.500;AN=2;DP=520;set=Intersection	GT:AD:AF:DP	0/1:285,229:0.45:514
chr7	98637945	rs80109397	C	G	942.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:59,46:0.44:105
chr7	98643303	.	A	G	4075.77	.	AC=1;AF=0.500;AN=2;DP=399;set=Intersection	GT:AD:AF:DP	0/1:204,188:0.48:392
chr7	98658130	rs11311529	CT	C	1905.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.766;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=1.479;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=1.224;QD=10.65;ReadPosRankSum=0.419;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:44,135:0.75:179
chr7	98659812	rs67817120	GGT	G	1897.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.13;SOR=0.739;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr7	98659813	.	GTGA	G	923	.	AC=2;AF=1.00;AN=2;BRF=0.44;FR=1.0000;HP=2;HapScore=1;MGOF=1;MMLQ=28;MQ=60.0;NF=4;NR=14;PP=923;QD=54.1405374779;SC=GAACTCCTGGGTGATTCAAGC;SbPval=0.58;Source=Platypus;TC=18;TCF=4;TCR=14;TR=18;WE=98659825;WS=98659803;set=Platypus	GT:AD:AF:DP	1/1:0,18:1.00:18
chr7	98659816	rs11295323	AT	A	1897.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.13;SOR=0.739;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr7	98659817	.	T	A	506	.	AC=2;AF=1.00;AN=2;BRF=0.44;FR=1.0000;HP=1;HapScore=1;MGOF=1;MMLQ=28;MQ=60.0;NF=11;NR=14;PP=506;QD=21.6308485019;SC=TCCTGGGTGATTCAAGCAATC;SbPval=0.7;Source=Platypus;TC=27;TCF=13;TCR=14;TR=25;WE=98659825;WS=98659803;set=Platypus	GT:AD:AF:DP	1/1:2,25:0.93:27
chr7	98775511	rs62473048	T	C	1829.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:78,82:0.51:160
chr7	98779740	rs6465740	G	T	7482.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr7	98782750	rs10953283	C	T	4405.77	.	AC=1;AF=0.500;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	0/1:234,210:0.47:444
chr7	98785818	rs12673020	A	G	197.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.229;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.91;MQRankSum=4.746;QD=5.35;ReadPosRankSum=0.124;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:22,15:0.41:37
chr7	98790511	rs76863538	A	C	494.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:15,22:0.59:37
chr7	98790607	rs369709836	TA	T	99.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.216;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=2.676;QD=0.64;ReadPosRankSum=1.190;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:125,32:0.20:157
chr7	98792835	rs61751722	G	A	3242.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:155,151:0.49:306
chr7	98792986	rs75285953	G	A	928.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.343;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=2.347;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.20;ReadPosRankSum=-0.283;SOR=0.957;set=HC	GT:AD:AF:DP	0/1:81,48:0.37:129
chr7	98792999	rs78998997	A	C	830.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:75,42:0.36:117
chr7	98936001	.	AT	A	122.19	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.882;ClippingRankSum=0.000;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=0.853;QD=3.13;ReadPosRankSum=0.878;SOR=0.853;set=HC	GT:AD:AF:DP	0/1:21,18:0.46:39
chr7	99217424	rs10282706	G	A	3793.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:158,176:0.53:334
chr7	99245914	rs15524	A	G	1596.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:78,75:0.49:153
chr7	99250475	rs28365094	T	C	2446.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:139,111:0.44:250
chr7	99269625	rs117445819	A	T	550.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:15,22:0.59:37
chr7	99293475	rs2740565	T	A	11358.77	.	AC=2;AF=1.00;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	1/1:0,420:1.00:420
chr7	99293859	rs11401860	C	CT	1550.52	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.441;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=1.096;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.664;QD=13.60;ReadPosRankSum=0.056;SOR=0.940;set=HC	GT:AD:AF:DP	0/1:19,95:0.83:114
chr7	99297601	rs2037500	A	C	8670.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr7	99297804	rs2177180	C	T	1575.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr7	99302994	rs10211	C	T	8026.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr7	99303094	rs12360	G	A	10455.77	.	AC=2;AF=1.00;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	1/1:0,391:1.00:391
chr7	99306566	rs2687077	C	T	4506.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr7	99306685	rs2257401	C	G	18907.77	.	AC=2;AF=1.00;AN=2;DB;DP=717;set=Intersection	GT:AD:AF:DP	1/1:0,711:1.00:711
chr7	99314986	rs2687075	A	G	13874.77	.	AC=2;AF=1.00;AN=2;DB;DP=502;set=Intersection	GT:AD:AF:DP	1/1:0,497:1.00:497
chr7	99365943	rs2687116	C	A	2748.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr7	99370493	rs2738258	T	C	4110.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr7	99436198	rs800672	G	A	813.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:29,36:0.55:65
chr7	99473624	rs1025576	T	G	438.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:15,17:0.53:32
chr7	99473896	.	C	T	2624.77	.	AC=1;AF=0.500;AN=2;DP=263;set=Intersection	GT:AD:AF:DP	0/1:137,125:0.48:262
chr7	99474427	rs2572023	A	G	3934.77	.	AC=1;AF=0.500;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	0/1:174,185:0.52:359
chr7	99474729	rs2572022	T	C	1221.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:47,54:0.53:101
chr7	99499872	rs2527913	A	T	1508.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:84,72:0.46:156
chr7	99500899	rs2247762	T	C	4903.77	.	AC=1;AF=0.500;AN=2;DB;DP=535;set=Intersection	GT:AD:AF:DP	0/1:290,242:0.45:532
chr7	99500911	rs2247761	A	G	4720.77	.	AC=1;AF=0.500;AN=2;DB;DP=516;set=Intersection	GT:AD:AF:DP	0/1:280,233:0.45:513
chr7	99501313	rs2572003	A	T	3803.77	.	AC=1;AF=0.500;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	0/1:211,182:0.46:393
chr7	99514417	rs2571997	A	C	2643.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:134,121:0.47:255
chr7	99526403	rs181056047	C	G	1193.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:63,59:0.48:122
chr7	99566007	rs8192465	G	A	4390.77	.	AC=1;AF=0.500;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	0/1:226,218:0.49:444
chr7	99567858	rs140897498	TTTTTTTG	T	1921.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.147;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=1.445;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.655;QD=15.50;ReadPosRankSum=0.738;SOR=0.607;set=HC	GT:AD:AF:DP	0/1:71,53:0.43:124
chr7	99567908	rs2527917	C	T	944.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:69,49:0.42:118
chr7	99569394	rs17295356	G	A	2864.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:127,134:0.51:261
chr7	99580907	rs2301806	C	G	2042.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:152,99:0.39:251
chr7	99589843	rs66748925	A	G	510.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:20,26:0.57:46
chr7	99654600	rs11558475	A	G	698.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:35,36:0.51:71
chr7	99654689	rs11558476	G	A	1492.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:72,73:0.50:145
chr7	99669802	rs11550034	A	G	7083.77	.	AC=1;AF=0.500;AN=2;DB;DP=664;set=Intersection	GT:AD:AF:DP	0/1:313,331:0.51:644
chr7	99673359	rs56054049	A	C	1568.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:76,78:0.51:154
chr7	99686873	rs4729575	G	T	4394.77	.	AC=1;AF=0.500;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	0/1:201,200:0.50:401
chr7	99691740	rs1527423	G	A	5568.77	.	AC=1;AF=0.500;AN=2;DB;DP=476;set=Intersection	GT:AD:AF:DP	0/1:221,252:0.53:473
chr7	99692993	rs2261360	G	T	1166.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:74,58:0.44:132
chr7	99693078	rs12267	G	A	1475.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:108,79:0.42:187
chr7	99693337	rs7799115	T	C	1418.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr7	99696370	rs1534309	C	G	2003.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:105,95:0.47:200
chr7	99697041	rs72518456	C	CA	155.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.040;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=14.730;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.13;ReadPosRankSum=0.142;SOR=3.164;set=HC	GT:AD:AF:DP	0/1:48,25:0.34:73
chr7	99699436	rs1122598	G	A	3009.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:94,151:0.62:245
chr7	99699626	rs2293481	T	C	3663.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:113,166:0.59:279
chr7	99701176	rs999885	G	A	2636.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:86,113:0.57:199
chr7	99701640	rs4729577	T	C	3170.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:121,146:0.55:267
chr7	99703407	rs35827619	GA	G	110.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.542;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=3.780;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=1.316;QD=2.91;ReadPosRankSum=-0.198;SOR=1.565;set=HC	GT:AD:AF:DP	0/1:23,15:0.39:38
chr7	99703505	rs62485013	A	G	1985.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:87,99:0.53:186
chr7	99704448	rs4134932	C	T	12836.77	.	AC=1;AF=0.500;AN=2;DB;DP=1190;set=Intersection	GT:AD:AF:DP	0/1:567,615:0.52:1182
chr7	99704827	rs1050542	A	G	281.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:11,14:0.56:25
chr7	99706303	rs4134923	A	G	327.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:26,15:0.37:41
chr7	99707712	rs2272338	A	G	5606.77	.	AC=1;AF=0.500;AN=2;DB;DP=544;set=Intersection	GT:AD:AF:DP	0/1:278,263:0.49:541
chr7	99707950	rs4134917	C	T	1461.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:101,71:0.41:172
chr7	99710584	rs4134904	A	AG	2839.73	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:85,96:0.53:181
chr7	99711461	rs34119670	AC	A	4699.73	.	AC=1;AF=0.500;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	0/1:141,219:0.61:360
chr7	99711614	rs4134898	C	T	6741.77	.	AC=1;AF=0.500;AN=2;DB;DP=631;set=Intersection	GT:AD:AF:DP	0/1:309,316:0.51:625
chr7	99720640	rs1569055	C	G	894.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:43,39:0.48:82
chr7	99747130	rs12878	G	A	6527.77	.	AC=1;AF=0.500;AN=2;DB;DP=689;set=Intersection	GT:AD:AF:DP	0/1:361,324:0.47:685
chr7	99747378	rs7785392	G	T	665.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:27,28:0.51:55
chr7	99751017	rs3736591	A	G	1600.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:86,79:0.48:165
chr7	99751281	rs3736590	G	T	3994.77	.	AC=1;AF=0.500;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	0/1:169,187:0.53:356
chr7	99752566	rs55839153	G	A	3313.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:159,161:0.50:320
chr7	99753121	rs2272337	A	G	2902.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:139,134:0.49:273
chr7	99757612	rs3823646	G	A	3062.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:135,138:0.51:273
chr7	99758136	rs3800951	T	G	8524.77	.	AC=1;AF=0.500;AN=2;DB;DP=774;set=Intersection	GT:AD:AF:DP	0/1:379,390:0.51:769
chr7	99768957	rs75779608	C	T	1258.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:65,64:0.50:129
chr7	99771305	rs71126309	C	CTCTT	1590.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.767;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=3.440;MLEAC=1;MLEAF=0.500;MQ=60.60;MQRankSum=1.757;QD=23.05;ReadPosRankSum=0.983;SOR=0.252;set=HC	GT:AD:AF:DP	0/1:29,40:0.58:69
chr7	99772298	rs10252037	A	C	12122.77	.	AC=2;AF=1.00;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	1/1:0,444:1.00:444
chr7	99774122	rs12705073	T	C	331.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:10,12:0.55:22
chr7	99778227	rs11531577	G	T	3749.77	.	AC=1;AF=0.500;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	0/1:218,182:0.46:400
chr7	99778285	rs2272343	A	C	2920.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:175,141:0.45:316
chr7	99780283	rs2056726	G	A	3500.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:149,158:0.51:307
chr7	99795215	rs62482167	C	G	3204.77	.	AC=1;AF=0.500;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	0/1:224,163:0.42:387
chr7	99796146	rs3735241	A	C	1035.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:62,55:0.47:117
chr7	99802812	rs2246713	G	C	5538.77	.	AC=1;AF=0.500;AN=2;DB;DP=546;set=Intersection	GT:AD:AF:DP	0/1:279,254:0.48:533
chr7	99810643	rs1618851	T	G	3007.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr7	99811204	rs1623264	G	C	4429.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr7	99811313	rs1624099	G	A	5232.77	.	AC=1;AF=0.500;AN=2;DB;DP=487;set=Intersection	GT:AD:AF:DP	0/1:244,242:0.50:486
chr7	99811464	rs1727130	C	G	16450.77	.	AC=2;AF=1.00;AN=2;DB;DP=597;set=Intersection	GT:AD:AF:DP	1/1:0,593:1.00:593
chr7	99816179	rs1727142	T	C	8965.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	1/1:0,342:1.00:342
chr7	99816256	rs1727143	C	A	2526.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:163,128:0.44:291
chr7	99816272	rs1636986	A	G	10083.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.753;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.61;MQRankSum=-0.854;QD=43.46;ReadPosRankSum=-0.932;SOR=1.031;set=HC	GT:AD:AF:DP	1/1:2,230:0.99:232
chr7	99816275	rs1636987	G	C	10059.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.907;ClippingRankSum=0.000;DB;DP=233;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.46;MQRankSum=-0.879;QD=43.93;ReadPosRankSum=-0.896;SOR=1.071;set=HC	GT:AD:AF:DP	1/1:2,227:0.99:229
chr7	99817585	rs7786505	G	T	216.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:34,13:0.28:47
chr7	99817859	rs2906645	A	G	2722.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr7	99818137	rs2906646	G	A	844.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:61,39:0.39:100
chr7	99818927	rs705867	C	T	2987.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:170,141:0.45:311
chr7	99819004	rs141918023	CTCTG	C	4729.73	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr7	99821381	rs858508	C	G	5251.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:2,182:0.99:184
chr7	99821470	rs858509	A	G	5390.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr7	99821685	rs863450	C	T	6592.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr7	99821838	rs372167927	ATTTTTT	A	738.76	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.050;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=2.570;MLEAC=1;MLEAF=0.500;MQ=60.53;MQRankSum=0.691;QD=27.36;ReadPosRankSum=0.504;SOR=0.991;set=HC	GT:AD:AF:DP	0/1:5,22:0.81:27
chr7	99821894	rs858510	C	T	329.90	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:1,16:0.94:17
chr7	99917416	rs112622797	G	A	2232.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.449;ClippingRankSum=0.000;DB;DP=245;ExcessHet=3.0103;FS=1.570;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-0.066;QD=9.42;ReadPosRankSum=0.356;SOR=0.790;set=HC	GT:AD:AF:DP	0/1:125,112:0.47:237
chr7	99950297	rs7795656	A	T	1028.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:58,48:0.45:106
chr7	99950408	rs7795805	A	G	2230.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.648;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=2.369;MLEAC=1;MLEAF=0.500;MQ=53.52;MQRankSum=-0.674;QD=19.07;ReadPosRankSum=1.696;SOR=0.485;set=HC	GT:AD:AF:DP	0/1:58,59:0.50:117
chr7	99950415	.	TCA	T	2276.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.127;ClippingRankSum=0.000;DP=119;ExcessHet=3.0103;FS=2.341;MLEAC=1;MLEAF=0.500;MQ=52.92;MQRankSum=-0.441;QD=19.13;ReadPosRankSum=2.463;SOR=0.496;set=HC	GT:AD:AF:DP	0/1:61,58:0.49:119
chr7	99950418	.	T	TGC	2233.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.760;ClippingRankSum=0.000;DP=119;ExcessHet=3.0103;FS=2.341;MLEAC=1;MLEAF=0.500;MQ=52.92;MQRankSum=-0.441;QD=18.77;ReadPosRankSum=2.824;SOR=0.496;set=HC	GT:AD:AF:DP	0/1:61,58:0.49:119
chr7	99950427	rs7799894	G	T	2140.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.030;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=3.366;MLEAC=1;MLEAF=0.500;MQ=52.14;MQRankSum=-0.389;QD=18.30;ReadPosRankSum=3.115;SOR=0.444;set=HC	GT:AD:AF:DP	0/1:60,57:0.49:117
chr7	99950450	rs7799901	G	A	1458.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.588;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=3.267;MLEAC=1;MLEAF=0.500;MQ=50.65;MQRankSum=-0.355;QD=11.86;ReadPosRankSum=0.874;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:58,65:0.53:123
chr7	99950508	rs7799932	G	C	1236.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:58,54:0.48:112
chr7	99954393	rs6946768	G	A	4121.77	.	AC=1;AF=0.500;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	0/1:227,202:0.47:429
chr7	99954457	rs41280971	G	T	2735.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:139,139:0.50:278
chr7	99955866	rs61735533	G	A	920.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:40,41:0.51:81
chr7	99956436	rs11771799	T	C	926.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.770;ClippingRankSum=0.000;DB;DP=290;ExcessHet=3.0103;FS=35.171;MLEAC=1;MLEAF=0.500;MQ=57.21;MQRankSum=-15.998;QD=3.25;ReadPosRankSum=-0.216;SOR=2.458;set=HC	GT:AD:AF:DP	0/1:244,41:0.14:285
chr7	99956439	rs35986051	T	C	889.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=10.296;ClippingRankSum=0.000;DB;DP=279;ExcessHet=3.0103;FS=39.897;MLEAC=1;MLEAF=0.500;MQ=57.12;MQRankSum=-15.850;QD=3.24;ReadPosRankSum=0.621;SOR=2.592;set=HC	GT:AD:AF:DP	0/1:236,39:0.14:275
chr7	99956444	rs11761306	A	G	940.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.674;ClippingRankSum=0.000;DB;DP=268;ExcessHet=3.0103;FS=44.749;MLEAC=1;MLEAF=0.500;MQ=57.19;MQRankSum=-15.592;QD=3.56;ReadPosRankSum=1.283;SOR=2.813;set=HC	GT:AD:AF:DP	0/1:226,38:0.14:264
chr7	99957128	rs5886120	GCCT	G	3193.73	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:91,84:0.48:175
chr7	99964789	rs11765869	T	G	1904.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:53,81:0.60:134
chr7	99971313	rs2405442	T	C	21295.77	.	AC=2;AF=1.00;AN=2;DB;DP=785;set=Intersection	GT:AD:AF:DP	1/1:0,782:1.00:782
chr7	99971834	rs1859788	A	G	13435.77	.	AC=2;AF=1.00;AN=2;DB;DP=491;set=Intersection	GT:AD:AF:DP	1/1:0,481:1.00:481
chr7	99972122	rs7792525	A	G	10875.77	.	AC=1;AF=0.500;AN=2;DB;DP=1047;MQ=60.02;set=Intersection	GT:AD:AF:DP	0/1:503,535:0.52:1038
chr7	99987805	rs7783550	C	T	454.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:11,21:0.66:32
chr7	99998607	rs11769886	G	A	737.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:54,35:0.39:89
chr7	100000274	rs35111986	C	A	1512.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:43,57:0.57:100
chr7	100002772	rs76913697	A	G	1866.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:83,87:0.51:170
chr7	100004446	rs1476679	C	T	6510.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr7	100006965	rs2286265	C	T	1083.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:33,47:0.59:80
chr7	100013457	rs5015756	T	C	1721.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:77,72:0.48:149
chr7	100014846	rs73161762	C	T	1321.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.615;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=1.496;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=0.000;QD=11.59;ReadPosRankSum=1.326;SOR=0.547;set=HC	GT:AD:AF:DP	0/1:51,63:0.55:114
chr7	100016844	rs11763414	C	G	2851.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:123,130:0.51:253
chr7	100017454	rs7783159	G	A	2910.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:126,137:0.52:263
chr7	100028187	rs6975729	C	T	7596.77	.	AC=1;AF=0.500;AN=2;DB;DP=774;set=Intersection	GT:AD:AF:DP	0/1:402,357:0.47:759
chr7	100028484	rs6962151	T	C	5518.77	.	AC=1;AF=0.500;AN=2;DB;DP=484;set=Intersection	GT:AD:AF:DP	0/1:242,235:0.49:477
chr7	100054637	rs150726853	GT	G	5495.73	.	AC=1;AF=0.500;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	0/1:181,164:0.48:345
chr7	100064719	rs7806537	A	G	6480.77	.	AC=1;AF=0.500;AN=2;DB;DP=666;set=Intersection	GT:AD:AF:DP	0/1:342,314:0.48:656
chr7	100065443	rs7811142	A	T	2897.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:128,129:0.50:257
chr7	100072031	rs7809801	T	C	2052.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:130,106:0.45:236
chr7	100074813	.	GA	G	372.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.174;ClippingRankSum=0.000;DP=104;ExcessHet=3.0103;FS=17.081;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.05;ReadPosRankSum=-0.401;SOR=3.611;set=HC	GT:AD:AF:DP	0/1:75,17:0.18:92
chr7	100083078	rs67040465	G	A	1319.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:50,59:0.54:109
chr7	100088640	rs2897358	C	G	4563.77	.	AC=1;AF=0.500;AN=2;DB;DP=540;set=Intersection	GT:AD:AF:DP	0/1:292,234:0.44:526
chr7	100091215	rs73405353	G	A	992.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:42,43:0.51:85
chr7	100137085	rs78279132	G	C	4475.77	.	AC=1;AF=0.500;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	0/1:193,204:0.51:397
chr7	100172858	rs3197597	C	T	2404.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:74,107:0.59:181
chr7	100173481	rs2075668	A	G	6499.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr7	100173636	rs187358095	C	A	2130.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:104,103:0.50:207
chr7	100175473	rs909152	T	C	17971.77	.	AC=2;AF=1.00;AN=2;DB;DP=693;set=Intersection	GT:AD:AF:DP	1/1:3,668:1.00:671
chr7	100197871	rs2272575	A	G	2048.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:95,98:0.51:193
chr7	100198386	rs11768465	C	T	6295.77	.	AC=1;AF=0.500;AN=2;DB;DP=656;set=Intersection	GT:AD:AF:DP	0/1:341,309:0.48:650
chr7	100201230	rs112882557	AC	A	894.73	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:24,41:0.63:65
chr7	100202219	rs56328569	C	G	594.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:46,27:0.37:73
chr7	100211486	rs7812235	G	C	694.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:23,33:0.59:56
chr7	100212386	rs202084428	T	TA	427.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.192;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.812;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.96;ReadPosRankSum=1.190;SOR=0.590;set=HC	GT:AD:AF:DP	0/1:71,37:0.34:108
chr7	100212754	rs11764045	C	T	3483.77	.	AC=1;AF=0.500;AN=2;DB;DP=344;MQ=60.06;set=Intersection	GT:AD:AF:DP	0/1:172,167:0.49:339
chr7	100225031	rs2075674	G	A	2409.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:112,117:0.51:229
chr7	100227188	rs7457868	A	C	2464.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr7	100240771	rs1052897	A	T	3612.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.37;SOR=1.758;set=HC	GT:AD:AF:DP	1/1:0,132:1.00:132
chr7	100252918	rs2231172	A	G	996.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:41,38:0.48:79
chr7	100274063	rs62482252	C	A	4406.77	.	AC=1;AF=0.500;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	0/1:199,205:0.51:404
chr7	100279946	rs117080933	G	A	3155.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:133,148:0.53:281
chr7	100280624	rs12531792	G	A	650.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:34,29:0.46:63
chr7	100280896	rs221793	A	C	7055.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr7	100281768	rs221794	T	C	8177.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr7	100282538	rs11974395	G	A	3937.77	.	AC=1;AF=0.500;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	0/1:216,193:0.47:409
chr7	100283261	rs221795	C	T	79.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:6,5:0.45:11
chr7	100284510	rs35436931	TG	T	9541.73	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr7	100284913	rs221796	C	G	11452.77	.	AC=2;AF=1.00;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	1/1:0,423:1.00:423
chr7	100285888	rs2272572	C	T	1473.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.514;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=3.422;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.70;ReadPosRankSum=-0.251;SOR=1.047;set=HC	GT:AD:AF:DP	0/1:71,81:0.53:152
chr7	100285974	rs221797	A	C	4284.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr7	100320627	rs78925197	G	A	4903.77	.	AC=1;AF=0.500;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	0/1:221,227:0.51:448
chr7	100344359	rs2293769	T	C	1553.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:103,74:0.42:177
chr7	100345106	rs2075671	G	A	1298.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:58,60:0.51:118
chr7	100348129	rs3847057	G	A	1662.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:76,74:0.49:150
chr7	100348940	rs2075669	T	C	653.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:15,30:0.67:45
chr7	100350763	rs6942733	T	G	13721.77	.	AC=1;AF=0.500;AN=2;DB;DP=1471;set=Intersection	GT:AD:AF:DP	0/1:777,675:0.46:1452
chr7	100353125	rs6971700	A	G	421.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:45,21:0.32:66
chr7	100355708	rs138715256	CAAATAAATAAAT	C	722.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.347;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=4.430;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.59;ReadPosRankSum=1.593;SOR=0.138;set=HC	GT:AD:AF:DP	0/1:13,19:0.59:32
chr7	100359797	rs75572930	G	T	5211.77	.	AC=1;AF=0.500;AN=2;DB;DP=528;set=Intersection	GT:AD:AF:DP	0/1:249,250:0.50:499
chr7	100360037	.	A	ACT	391.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.768;ClippingRankSum=0.000;DP=61;ExcessHet=3.0103;FS=1.778;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.90;ReadPosRankSum=-1.986;SOR=0.258;set=HC	GT:AD:AF:DP	0/1:22,22:0.50:44
chr7	100361391	rs3215395	G	GC	3429.73	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:120,111:0.48:231
chr7	100361580	rs3215394	TG	T	10260.73	.	AC=1;AF=0.500;AN=2;DB;DP=788;set=Intersection	GT:AD:AF:DP	0/1:428,342:0.44:770
chr7	100361675	rs2293767	G	A	8644.77	.	AC=1;AF=0.500;AN=2;DB;DP=916;set=Intersection	GT:AD:AF:DP	0/1:481,428:0.47:909
chr7	100363155	rs201491474	A	C	2573.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:99,113:0.53:212
chr7	100364105	rs11296431	CA	C	1748.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.855;ClippingRankSum=0.000;DB;DP=284;ExcessHet=3.0103;FS=0.461;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.580;QD=6.38;ReadPosRankSum=1.014;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:155,119:0.43:274
chr7	100365567	rs10953302	C	T	4130.77	.	AC=1;AF=0.500;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	0/1:241,201:0.45:442
chr7	100365613	rs10953303	G	T	2927.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:180,144:0.44:324
chr7	100366203	rs10232130	C	G	5101.77	.	AC=1;AF=0.500;AN=2;DB;DP=502;set=Intersection	GT:AD:AF:DP	0/1:259,242:0.48:501
chr7	100366284	rs10247980	T	C	5662.77	.	AC=1;AF=0.500;AN=2;DB;DP=551;set=Intersection	GT:AD:AF:DP	0/1:278,270:0.49:548
chr7	100370800	rs489951	T	C	907.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.308;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.77;MQRankSum=-1.441;QD=11.07;ReadPosRankSum=1.365;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:42,40:0.49:82
chr7	100371100	rs2734880	C	A	3024.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:113,129:0.53:242
chr7	100371114	rs314298	C	T	2621.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:93,109:0.54:202
chr7	100371473	rs314299	C	T	6209.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=581;set=Intersection	GT:AD:AF:DP	0/1:279,297:0.52:576
chr7	100371474	rs78193191	G	A	10039.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=562;set=Intersection	GT:AD:AF:DP	0/1:294,263:0.47:557
chr7	100371476	rs148800656	T	TG	10045.73	.	AC=1;AF=0.500;AN=2;DB;DP=552;set=Intersection	GT:AD:AF:DP	0/1:286,261:0.48:547
chr7	100373077	rs542137	C	G	7395.77	.	AC=1;AF=0.500;AN=2;DB;DP=734;set=Intersection	GT:AD:AF:DP	0/1:367,352:0.49:719
chr7	100373271	rs540330	G	T	3205.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:161,149:0.48:310
chr7	100373367	rs539445	G	C	4085.77	.	AC=1;AF=0.500;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	0/1:207,200:0.49:407
chr7	100374087	rs314300	A	G	6412.77	.	AC=1;AF=0.500;AN=2;DB;DP=576;MQ=60.02;set=Intersection	GT:AD:AF:DP	0/1:262,305:0.54:567
chr7	100374265	rs149853621	TCCCTC	T	1261.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.023;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=1.725;QD=19.12;ReadPosRankSum=-3.171;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:32,34:0.52:66
chr7	100376978	rs314303	T	C	5370.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:2,185:0.99:187
chr7	100377082	rs531503	T	C	7501.77	.	AC=1;AF=0.500;AN=2;DB;DP=757;MQ=60.01;set=Intersection	GT:AD:AF:DP	0/1:380,369:0.49:749
chr7	100377373	rs482308	G	A	1764.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:67,77:0.53:144
chr7	100383605	rs160602	T	A	2008.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:100,92:0.48:192
chr7	100385561	rs72364644	GGCTTCAGCTACCGCTTGCAAGGCCGCATGACCTAT	G	7974.73	.	AC=1;AF=0.500;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	0/1:255,209:0.45:464
chr7	100386900	rs191137	T	C	11976.77	.	AC=2;AF=1.00;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	1/1:0,451:1.00:451
chr7	100389928	rs76427635	GA	TT	4232.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;JOINED;set=Intersection	GT:AD:AF:DP	0/1:102,109:0.52:211
chr7	100391581	rs314339	T	C	5059.77	.	AC=1;AF=0.500;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	0/1:227,244:0.52:471
chr7	100391644	rs314340	T	C	10605.77	.	AC=2;AF=1.00;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	1/1:0,391:1.00:391
chr7	100393141	rs314343	C	G	92.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:4,5:0.56:9
chr7	100395003	rs314344	G	C	1653.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:82,76:0.48:158
chr7	100401270	rs314348	T	G	3840.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr7	100410597	rs2230585	G	A	10234.77	.	AC=1;AF=0.500;AN=2;DB;DP=1027;set=Intersection	GT:AD:AF:DP	0/1:537,487:0.48:1024
chr7	100410657	rs314358	A	G	9012.77	.	AC=1;AF=0.500;AN=2;DB;DP=894;set=Intersection	GT:AD:AF:DP	0/1:450,434:0.49:884
chr7	100411278	rs314359	T	C	2735.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:126,133:0.51:259
chr7	100414704	.	CAAAAAA	C	1110.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.861;ClippingRankSum=0.000;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=1.471;QD=17.92;ReadPosRankSum=-0.539;SOR=0.922;set=HC	GT:AD:AF:DP	0/1:20,42:0.68:62
chr7	100416250	rs144173	A	G	5471.77	.	AC=1;AF=0.500;AN=2;DB;DP=623;set=Intersection	GT:AD:AF:DP	0/1:335,281:0.46:616
chr7	100416332	rs314364	T	A	1463.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.957;ClippingRankSum=0.000;DB;DP=279;ExcessHet=3.0103;FS=6.282;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.67;ReadPosRankSum=5.288;SOR=0.415;set=HC	GT:AD:AF:DP	0/1:151,107:0.41:258
chr7	100416354	rs314365	G	C	2076.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:70,90:0.56:160
chr7	100424577	rs141919245	G	GC	680.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.883;ClippingRankSum=0.000;DB;DP=244;ExcessHet=3.0103;FS=5.944;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.96;ReadPosRankSum=-0.302;SOR=1.147;set=HC	GT:AD:AF:DP	0/1:171,59:0.26:230
chr7	100424587	rs2304374	G	C	1449.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:181,75:0.29:256
chr7	100424776	rs2571606	C	G	948.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:29,37:0.56:66
chr7	100456611	rs314374	G	C	3705.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:175,168:0.49:343
chr7	100458795	rs314378	T	C	7598.77	.	AC=1;AF=0.500;AN=2;DB;DP=747;set=Intersection	GT:AD:AF:DP	0/1:371,365:0.50:736
chr7	100466441	rs2075756	G	A	733.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:30,34:0.53:64
chr7	100467975	rs10627414	C	CCT	4496.73	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr7	100468103	rs7800241	G	A	1973.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:80,91:0.53:171
chr7	100468284	rs1054391	A	G	4978.77	.	AC=1;AF=0.500;AN=2;DB;DP=475;set=Intersection	GT:AD:AF:DP	0/1:235,237:0.50:472
chr7	100468398	rs7783543	T	C	1301.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:87,68:0.44:155
chr7	100470474	rs367565917	CT	C	117.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.223;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=1.413;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.81;ReadPosRankSum=0.467;SOR=1.051;set=HC	GT:AD:AF:DP	0/1:43,22:0.34:65
chr7	100481658	rs11310439	GT	G	3855.73	.	AC=1;AF=0.500;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	0/1:197,176:0.47:373
chr7	100481718	rs145327657	G	A	4324.77	.	AC=1;AF=0.500;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	0/1:224,215:0.49:439
chr7	100482026	rs15624	T	C	2217.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:158,106:0.40:264
chr7	100482526	rs6942607	C	G	3535.77	.	AC=1;AF=0.500;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	0/1:179,169:0.49:348
chr7	100484917	rs6954151	C	T	11887.77	.	AC=1;AF=0.500;AN=2;DB;DP=1315;set=Intersection	GT:AD:AF:DP	0/1:713,592:0.45:1305
chr7	100486035	rs2720392	C	A	3331.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:118,148:0.56:266
chr7	100486088	rs3087504	C	T	3520.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:162,156:0.49:318
chr7	100486656	rs13241786	T	G	4676.77	.	AC=1;AF=0.500;AN=2;DB;DP=608;set=Intersection	GT:AD:AF:DP	0/1:350,240:0.41:590
chr7	100488658	rs1799806	G	C	533.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:20,25:0.56:45
chr7	100494222	rs66793456	G	GC	11975.73	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr7	100547148	.	GCAA	G	332.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.083;ClippingRankSum=0.000;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.84;ReadPosRankSum=-1.070;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:12,9:0.43:21
chr7	100547155	rs74789991	C	A	341.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.868;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=1.860;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.53;ReadPosRankSum=-1.303;SOR=0.273;set=HC	GT:AD:AF:DP	0/1:12,10:0.45:22
chr7	100547173	rs75482949	T	C	423.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.577;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.66;ReadPosRankSum=-0.408;SOR=0.418;set=HC	GT:AD:AF:DP	0/1:12,12:0.50:24
chr7	100547173	.	TTA	CTG	464	.	AC=1;AF=0.500;AN=2;BRF=0.42;FR=0.5000;HP=1;HapScore=2;MGOF=111;MMLQ=28;MQ=60.0;NF=3;NR=1;PP=464;QD=129.366968716;SC=AGCACTTTCATTACGTGCACG;SbPval=0.8;Source=Platypus;TC=21;TCF=14;TCR=7;TR=4;WE=100547203;WS=100547163;set=Platypus	GT:AD:AF:DP	1/0:17,4:0.19:21
chr7	100547175	rs78695034	A	G	501.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.120;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=1.810;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.91;ReadPosRankSum=0.524;SOR=0.292;set=HC	GT:AD:AF:DP	0/1:13,11:0.46:24
chr7	100547179	.	GCACGCCC	G	314	.	AC=1;AF=0.500;AN=2;BRF=0.42;FR=0.5000;HP=1;HapScore=2;MGOF=111;MMLQ=24;MQ=60.0;NF=2;NR=1;PP=314;QD=119.0;SC=TTCATTACGTGCACGCCCCAG;SbPval=0.51;Source=Platypus;TC=14;TCF=11;TCR=3;TR=3;WE=100547203;WS=100547163;set=Platypus	GT:AD:AF:DP	1/0:11,3:0.21:14
chr7	100547182	rs76728014	C	T	550.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.254;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=1.737;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.67;ReadPosRankSum=0.508;SOR=0.321;set=HC	GT:AD:AF:DP	0/1:15,13:0.46:28
chr7	100547183	.	GC	G	570.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.925;ClippingRankSum=0.000;DP=31;ExcessHet=3.0103;FS=3.846;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.41;ReadPosRankSum=0.681;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:17,14:0.45:31
chr7	100547185	.	C	T	537.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.153;ClippingRankSum=0.000;DP=31;ExcessHet=3.0103;FS=3.846;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.35;ReadPosRankSum=0.943;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:17,14:0.45:31
chr7	100547189	.	GGGCCAC	G	560.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.581;ClippingRankSum=0.000;DP=31;ExcessHet=3.0103;FS=3.634;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.09;ReadPosRankSum=-0.042;SOR=0.210;set=HC	GT:AD:AF:DP	0/1:15,16:0.52:31
chr7	100547211	rs79277565	T	C	868.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.687;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=6.527;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.68;ReadPosRankSum=0.088;SOR=0.197;set=HC	GT:AD:AF:DP	0/1:20,22:0.52:42
chr7	100547215	rs77163569	T	C	949.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.012;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=6.121;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.79;ReadPosRankSum=0.640;SOR=0.496;set=HC	GT:AD:AF:DP	0/1:24,24:0.50:48
chr7	100547220	rs77805555	A	G	936.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.700;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=7.618;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.67;ReadPosRankSum=1.088;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:28,25:0.47:53
chr7	100547225	rs77066311	T	C	936.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.789;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=7.618;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.67;ReadPosRankSum=0.803;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:28,25:0.47:53
chr7	100547227	rs76736259	T	C	936.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.158;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=7.883;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.01;ReadPosRankSum=1.442;SOR=0.786;set=HC	GT:AD:AF:DP	0/1:28,24:0.46:52
chr7	100547238	rs79636720	C	T	457.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:35,24:0.41:59
chr7	100547525	rs142704104	ACC	A	790.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr7	100549414	rs75254397	CA	AT	1562.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.664;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=2.155;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.51;ReadPosRankSum=-0.618;SOR=1.066;set=HC	GT:AD:AF:DP	0/1:159,49:0.24:208
chr7	100549421	rs75196671	G	C	1865.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.251;ClippingRankSum=0.000;DB;DP=243;ExcessHet=3.0103;FS=13.231;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.71;ReadPosRankSum=-0.407;SOR=1.859;set=HC	GT:AD:AF:DP	0/1:185,57:0.24:242
chr7	100549422	rs78470577	A	T	1844.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.583;ClippingRankSum=0.000;DB;DP=245;ExcessHet=3.0103;FS=14.877;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.56;ReadPosRankSum=-0.559;SOR=1.934;set=HC	GT:AD:AF:DP	0/1:186,58:0.24:244
chr7	100549426	rs78724937	A	G	1879.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.417;ClippingRankSum=0.000;DB;DP=267;ExcessHet=3.0103;FS=18.214;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.07;ReadPosRankSum=-0.089;SOR=2.124;set=HC	GT:AD:AF:DP	0/1:205,61:0.23:266
chr7	100549505	rs74588241	T	C	8770.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.973;ClippingRankSum=0.000;DB;DP=958;ExcessHet=3.0103;FS=6.015;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-2.320;QD=9.17;ReadPosRankSum=-2.111;SOR=1.148;set=HC	GT:AD:AF:DP	0/1:697,259:0.27:956
chr7	100549512	rs77667788	A	T	9496.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.287;ClippingRankSum=0.000;DB;DP=1039;ExcessHet=3.0103;FS=4.991;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-2.364;QD=9.17;ReadPosRankSum=-0.445;SOR=1.186;set=HC	GT:AD:AF:DP	0/1:763,273:0.26:1036
chr7	100549516	rs76951301	C	A	10010.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.947;ClippingRankSum=0.000;DB;DP=1086;ExcessHet=3.0103;FS=6.079;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-2.344;QD=9.24;ReadPosRankSum=-0.401;SOR=1.157;set=HC	GT:AD:AF:DP	0/1:794,289:0.27:1083
chr7	100549527	rs77426926	A	G	11590.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=10.286;ClippingRankSum=0.000;DB;DP=1190;ExcessHet=3.0103;FS=8.470;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-2.264;QD=9.76;ReadPosRankSum=-0.585;SOR=1.279;set=HC	GT:AD:AF:DP	0/1:854,333:0.28:1187
chr7	100549530	rs77626205	A	G	12195.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.419;ClippingRankSum=0.000;DB;DP=1220;ExcessHet=3.0103;FS=8.470;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-2.257;QD=10.02;ReadPosRankSum=-0.310;SOR=1.346;set=HC	GT:AD:AF:DP	0/1:874,343:0.28:1217
chr7	100549537	rs75781078	G	A	13452.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.834;ClippingRankSum=0.000;DB;DP=1292;ExcessHet=3.0103;FS=8.310;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-2.191;QD=10.44;ReadPosRankSum=-0.782;SOR=1.338;set=HC	GT:AD:AF:DP	0/1:910,379:0.29:1289
chr7	100549540	.	A	C	13865.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.506;ClippingRankSum=0.000;DP=1323;ExcessHet=3.0103;FS=8.325;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-2.176;QD=10.50;ReadPosRankSum=-0.598;SOR=1.352;set=HC	GT:AD:AF:DP	0/1:928,392:0.30:1320
chr7	100549543	rs79492129	G	A	14339.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=10.630;ClippingRankSum=0.000;DB;DP=1349;ExcessHet=3.0103;FS=9.577;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-2.156;QD=10.65;ReadPosRankSum=-0.481;SOR=1.412;set=HC	GT:AD:AF:DP	0/1:942,404:0.30:1346
chr7	100549547	rs77743944	TG	CC	17515.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=13.269;ClippingRankSum=0.000;DB;DP=1395;ExcessHet=3.0103;FS=9.601;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-2.136;QD=12.58;ReadPosRankSum=-0.272;SOR=1.373;set=HC	GT:AD:AF:DP	0/1:968,424:0.30:1392
chr7	100549573	rs73163748	G	T	21961.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.524;ClippingRankSum=0.000;DB;DP=1606;ExcessHet=3.0103;FS=1.854;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.72;ReadPosRankSum=-1.043;SOR=0.870;set=HC	GT:AD:AF:DP	0/1:1018,583:0.36:1601
chr7	100549583	rs73163749	G	A	23796.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.135;ClippingRankSum=0.000;DB;DP=1676;ExcessHet=3.0103;FS=2.551;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.25;ReadPosRankSum=-0.401;SOR=0.893;set=HC	GT:AD:AF:DP	0/1:1036,634:0.38:1670
chr7	100549592	rs73163750	TT	AA	24435.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.492;ClippingRankSum=0.000;DB;DP=1699;ExcessHet=3.0103;FS=1.817;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.43;ReadPosRankSum=1.893;SOR=0.891;set=HC	GT:AD:AF:DP	0/1:1052,641:0.38:1693
chr7	100549650	rs73398716	A	G	18062.77	.	AC=1;AF=0.500;AN=2;DB;DP=2147;set=Intersection	GT:AD:AF:DP	0/1:1217,914:0.43:2131
chr7	100549697	rs77036391	A	G	42963.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.339;ClippingRankSum=0.000;DB;DP=2539;ExcessHet=3.0103;FS=1.743;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.02;ReadPosRankSum=0.214;SOR=0.817;set=HC	GT:AD:AF:DP	0/1:1385,1140:0.45:2525
chr7	100549703	rs78164286	C	T	43021.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.351;ClippingRankSum=0.000;DB;DP=2561;ExcessHet=3.0103;FS=2.445;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.89;ReadPosRankSum=2.027;SOR=0.845;set=HC	GT:AD:AF:DP	0/1:1409,1138:0.45:2547
chr7	100549787	rs73714227	CA	TG	45448.77	.	AC=1;AF=0.500;AN=2;DB;DP=2411;JOINED;set=Intersection	GT:AD:AF:DP	0/1:1193,1175:0.50:2368
chr7	100549840	rs75741102	C	T	5604.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.516;ClippingRankSum=0.000;DB;DP=2287;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.46;ReadPosRankSum=2.611;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:1836,441:0.19:2277
chr7	100549873	rs74193966	G	A	39351.77	.	AC=1;AF=0.500;AN=2;DB;DP=2145;set=Intersection	GT:AD:AF:DP	0/1:1094,1045:0.49:2139
chr7	100549884	rs73163752	C	T	39022.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.561;ClippingRankSum=0.000;DB;DP=2089;ExcessHet=3.0103;FS=1.729;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.72;ReadPosRankSum=-0.682;SOR=0.843;set=HC	GT:AD:AF:DP	0/1:1095,990:0.47:2085
chr7	100549894	rs78007565	T	C	38985.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.248;ClippingRankSum=0.000;DB;DP=2115;ExcessHet=3.0103;FS=2.430;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=2.128;QD=18.47;ReadPosRankSum=-1.961;SOR=0.872;set=HC	GT:AD:AF:DP	0/1:1120,991:0.47:2111
chr7	100549896	rs79035545	G	C	38622.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.288;ClippingRankSum=0.000;DB;DP=2116;ExcessHet=3.0103;FS=2.443;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=2.131;QD=18.29;ReadPosRankSum=-2.194;SOR=0.883;set=HC	GT:AD:AF:DP	0/1:1122,990:0.47:2112
chr7	100549902	rs75991009	C	T	38598.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.725;ClippingRankSum=0.000;DB;DP=2120;ExcessHet=3.0103;FS=2.437;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=2.161;QD=18.25;ReadPosRankSum=-2.164;SOR=0.872;set=HC	GT:AD:AF:DP	0/1:1138,977:0.46:2115
chr7	100549914	rs73714228	G	A	37326.77	.	AC=1;AF=0.500;AN=2;DB;DP=2143;set=Intersection	GT:AD:AF:DP	0/1:1179,958:0.45:2137
chr7	100549935	rs73714229	T	G	35066.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.427;ClippingRankSum=0.000;DB;DP=2112;ExcessHet=3.0103;FS=0.523;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=2.303;QD=16.64;ReadPosRankSum=0.266;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:1200,907:0.43:2107
chr7	100549942	rs73714230	T	C	34277.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.392;ClippingRankSum=0.000;DB;DP=2142;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=2.301;QD=16.05;ReadPosRankSum=0.294;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:1216,920:0.43:2136
chr7	100549979	rs73398717	C	T	18538.77	.	AC=1;AF=0.500;AN=2;DB;DP=2032;set=Intersection	GT:AD:AF:DP	0/1:1116,898:0.45:2014
chr7	100550032	rs111723000	C	CCCT	23151.73	.	AC=1;AF=0.500;AN=2;DB;DP=1754;set=Intersection	GT:AD:AF:DP	0/1:912,711:0.44:1623
chr7	100550079	rs28379747	A	C	14938.77	.	AC=1;AF=0.500;AN=2;DB;DP=1640;set=Intersection	GT:AD:AF:DP	0/1:922,699:0.43:1621
chr7	100550133	rs74197937	A	G	25101.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.802;ClippingRankSum=0.000;DB;DP=1591;ExcessHet=3.0103;FS=3.247;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=2.589;QD=16.01;ReadPosRankSum=-0.780;SOR=0.911;set=HC	GT:AD:AF:DP	0/1:897,671:0.43:1568
chr7	100550138	rs73714233	C	T	25225.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.720;ClippingRankSum=0.000;DB;DP=1599;ExcessHet=3.0103;FS=2.465;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=2.574;QD=16.03;ReadPosRankSum=-0.877;SOR=0.885;set=HC	GT:AD:AF:DP	0/1:896,678:0.43:1574
chr7	100550184	rs73714234	C	A	19731.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.190;ClippingRankSum=0.000;DB;DP=1529;ExcessHet=3.0103;FS=3.312;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=0.000;QD=13.19;ReadPosRankSum=5.159;SOR=0.803;set=HC	GT:AD:AF:DP	0/1:923,573:0.38:1496
chr7	100550191	rs35523587	C	T	6690.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.057;ClippingRankSum=0.000;DB;DP=1492;ExcessHet=3.0103;FS=1.247;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=0.000;QD=4.59;ReadPosRankSum=-3.308;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:1058,401:0.27:1459
chr7	100550203	rs75141335	T	A	18367.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.737;ClippingRankSum=0.000;DB;DP=1426;ExcessHet=3.0103;FS=3.373;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=0.000;QD=13.17;ReadPosRankSum=4.904;SOR=0.839;set=HC	GT:AD:AF:DP	0/1:900,495:0.35:1395
chr7	100550203	.	TCA	ACC	2944	.	AC=1;AF=0.500;AN=2;BRF=0.56;FR=0.5000;HP=1;HapScore=1;MGOF=92;MMLQ=24;MQ=59.47;NF=143;NR=231;PP=2944;QD=20;SC=CATCACTTCTTCAATCACTTC;SbPval=0.06;Source=Platypus;TC=1193;TCF=619;TCR=574;TR=374;WE=100550213;WS=100550174;set=Platypus	GT:AD:AF:DP	1/0:819,374:0.31:1193
chr7	100550205	rs77471356	A	C	18037.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.695;ClippingRankSum=0.000;DB;DP=1408;ExcessHet=3.0103;FS=3.373;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=0.000;QD=13.09;ReadPosRankSum=4.334;SOR=0.833;set=HC	GT:AD:AF:DP	0/1:890,488:0.35:1378
chr7	100550245	rs66732041	G	A	10312.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.518;ClippingRankSum=0.000;DB;DP=1310;ExcessHet=3.0103;FS=2.049;MLEAC=1;MLEAF=0.500;MQ=59.82;MQRankSum=-0.319;QD=8.07;ReadPosRankSum=-2.656;SOR=0.781;set=HC	GT:AD:AF:DP	0/1:954,324:0.25:1278
chr7	100550247	rs77753678	C	A	698.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.058;ClippingRankSum=0.000;DB;DP=1314;ExcessHet=3.0103;FS=2.784;MLEAC=1;MLEAF=0.500;MQ=59.82;MQRankSum=0.674;QD=0.55;ReadPosRankSum=-1.539;SOR=0.860;set=HC	GT:AD:AF:DP	0/1:1114,168:0.13:1282
chr7	100550252	rs67587735	A	G	9878.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.952;ClippingRankSum=0.000;DB;DP=1299;ExcessHet=3.0103;FS=1.334;MLEAC=1;MLEAF=0.500;MQ=59.82;MQRankSum=-3.152;QD=7.80;ReadPosRankSum=-3.958;SOR=0.791;set=HC	GT:AD:AF:DP	0/1:973,294:0.23:1267
chr7	100550271	rs71540914	A	G	7158.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.202;ClippingRankSum=0.000;DB;DP=1237;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=-3.590;QD=5.91;ReadPosRankSum=-10.007;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:983,229:0.19:1212
chr7	100550282	rs71540915	C	T	1866.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.217;ClippingRankSum=0.000;DB;DP=1169;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=-2.806;QD=1.67;ReadPosRankSum=-7.169;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:994,126:0.11:1120
chr7	100550286	.	T	C	1878.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.553;ClippingRankSum=0.000;DP=1156;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-2.826;QD=1.66;ReadPosRankSum=-8.590;SOR=0.791;set=HC	GT:AD:AF:DP	0/1:1008,126:0.11:1134
chr7	100550289	rs71540916	G	T	1878.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.574;ClippingRankSum=0.000;DB;DP=1136;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-2.881;QD=1.68;ReadPosRankSum=-9.465;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:998,120:0.11:1118
chr7	100550291	.	C	G	2225.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.556;ClippingRankSum=0.000;DP=1131;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-3.000;QD=2.00;ReadPosRankSum=-9.267;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:1001,111:0.10:1112
chr7	100550304	rs71540918	C	T	3107.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.880;ClippingRankSum=0.000;DB;DP=1423;ExcessHet=3.0103;FS=3.071;MLEAC=1;MLEAF=0.500;MQ=59.78;MQRankSum=-3.453;QD=2.24;ReadPosRankSum=-3.875;SOR=0.968;set=HC	GT:AD:AF:DP	0/1:1234,152:0.11:1386
chr7	100550307	.	A	T	3707.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=14.972;ClippingRankSum=0.000;DP=1401;ExcessHet=3.0103;FS=8.384;MLEAC=1;MLEAF=0.500;MQ=59.76;MQRankSum=-0.723;QD=2.72;ReadPosRankSum=-1.508;SOR=1.435;set=HC	GT:AD:AF:DP	0/1:1184,180:0.13:1364
chr7	100550312	.	T	C	3858.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=14.595;ClippingRankSum=0.000;DP=1378;ExcessHet=3.0103;FS=5.579;MLEAC=1;MLEAF=0.500;MQ=59.76;MQRankSum=-0.736;QD=2.86;ReadPosRankSum=-1.299;SOR=1.280;set=HC	GT:AD:AF:DP	0/1:1175,172:0.13:1347
chr7	100550315	rs76964559	T	C	15755.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.908;ClippingRankSum=0.000;DB;DP=1385;ExcessHet=3.0103;FS=0.564;MLEAC=1;MLEAF=0.500;MQ=59.76;MQRankSum=-9.022;QD=11.63;ReadPosRankSum=-5.548;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:932,423:0.31:1355
chr7	100550318	.	G	A	3437.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.912;ClippingRankSum=0.000;DP=1366;ExcessHet=3.0103;FS=5.579;MLEAC=1;MLEAF=0.500;MQ=59.75;MQRankSum=-0.669;QD=2.57;ReadPosRankSum=-0.536;SOR=1.192;set=HC	GT:AD:AF:DP	0/1:1171,166:0.12:1337
chr7	100550325	rs75788887	A	G	713.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=12.515;ClippingRankSum=0.000;DB;DP=1340;ExcessHet=3.0103;FS=1.064;MLEAC=1;MLEAF=0.500;MQ=59.72;MQRankSum=-3.043;QD=0.54;ReadPosRankSum=-1.030;SOR=0.799;set=HC	GT:AD:AF:DP	0/1:1217,98:0.07:1315
chr7	100550326	rs111371899	A	G	8171.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=10.354;ClippingRankSum=0.000;DB;DP=1333;ExcessHet=3.0103;FS=0.668;MLEAC=1;MLEAF=0.500;MQ=59.73;MQRankSum=-9.209;QD=6.25;ReadPosRankSum=-2.206;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:1054,254:0.19:1308
chr7	100550327	rs373932626	C	T	10347.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=6.258;ClippingRankSum=0.000;DB;DP=1332;ExcessHet=3.0103;FS=0.606;MLEAC=1;MLEAF=0.500;MQ=59.73;MQRankSum=-5.967;QD=8.53;ReadPosRankSum=-2.835;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:910,303:0.25:1213
chr7	100550328	rs74866207	A	G	14315.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=15.752;ClippingRankSum=0.000;DB;DP=1320;ExcessHet=3.0103;FS=1.205;MLEAC=1;MLEAF=0.500;MQ=59.72;MQRankSum=-6.206;QD=11.01;ReadPosRankSum=-2.739;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:903,397:0.31:1300
chr7	100550330	rs71540919	T	C	276.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.481;ClippingRankSum=0.000;DB;DP=1310;ExcessHet=3.0103;FS=1.070;MLEAC=1;MLEAF=0.500;MQ=59.72;MQRankSum=-3.323;QD=0.21;ReadPosRankSum=-0.642;SOR=0.877;set=HC	GT:AD:AF:DP	0/1:1198,93:0.07:1291
chr7	100550338	rs75318416	GG	CA	14718.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=12.793;ClippingRankSum=0.000;DB;DP=1270;ExcessHet=3.0103;FS=2.661;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.73;MQRankSum=-5.984;QD=11.74;ReadPosRankSum=-1.769;SOR=0.821;set=HC	GT:AD:AF:DP	0/1:854,400:0.32:1254
chr7	100550342	rs74184351	T	C	15803.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=10.821;ClippingRankSum=0.000;DB;DP=1286;ExcessHet=3.0103;FS=3.481;MLEAC=1;MLEAF=0.500;MQ=59.73;MQRankSum=-5.994;QD=12.42;ReadPosRankSum=-0.495;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:867,405:0.32:1272
chr7	100550343	rs74356244	C	T	53.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.738;ClippingRankSum=0.000;DB;DP=1309;ExcessHet=3.0103;FS=2.499;MLEAC=1;MLEAF=0.500;MQ=59.72;MQRankSum=-3.556;QD=0.04;ReadPosRankSum=-0.477;SOR=1.049;set=HC	GT:AD:AF:DP	0/1:1209,87:0.07:1296
chr7	100550348	.	A	C	3737.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.427;ClippingRankSum=0.000;DP=1325;ExcessHet=3.0103;FS=2.756;MLEAC=1;MLEAF=0.500;MQ=59.73;MQRankSum=-1.570;QD=2.84;ReadPosRankSum=-1.125;SOR=1.015;set=HC	GT:AD:AF:DP	0/1:1141,173:0.13:1314
chr7	100550355	.	C	A	315.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.487;ClippingRankSum=0.000;DP=1344;ExcessHet=3.0103;FS=2.309;MLEAC=1;MLEAF=0.500;MQ=59.73;MQRankSum=-7.764;QD=0.25;ReadPosRankSum=1.380;SOR=0.993;set=HC	GT:AD:AF:DP	0/1:1154,92:0.07:1246
chr7	100550358	rs74184446	C	T	7466.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.519;ClippingRankSum=0.000;DB;DP=1373;ExcessHet=3.0103;FS=9.368;MLEAC=1;MLEAF=0.500;MQ=59.74;MQRankSum=-3.612;QD=6.64;ReadPosRankSum=-0.389;SOR=1.118;set=HC	GT:AD:AF:DP	0/1:884,240:0.21:1124
chr7	100550360	.	T	C	5420.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.046;ClippingRankSum=0.000;DP=1350;ExcessHet=3.0103;FS=1.559;MLEAC=1;MLEAF=0.500;MQ=59.76;MQRankSum=-4.458;QD=4.07;ReadPosRankSum=-0.367;SOR=0.851;set=HC	GT:AD:AF:DP	0/1:1120,212:0.16:1332
chr7	100550364	rs74188306	C	T	8516.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.071;ClippingRankSum=0.000;DB;DP=1353;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.76;MQRankSum=-9.186;QD=6.33;ReadPosRankSum=1.574;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:1065,280:0.21:1345
chr7	100550376	.	C	T	2610.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.907;ClippingRankSum=0.000;DP=1373;ExcessHet=3.0103;FS=3.104;MLEAC=1;MLEAF=0.500;MQ=59.79;MQRankSum=1.472;QD=2.07;ReadPosRankSum=3.441;SOR=0.833;set=HC	GT:AD:AF:DP	0/1:1121,141:0.11:1262
chr7	100550384	rs77636516	C	T	2902.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.007;ClippingRankSum=0.000;DB;DP=1402;ExcessHet=3.0103;FS=1.843;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=1.736;QD=2.09;ReadPosRankSum=3.198;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:1233,159:0.11:1392
chr7	100550385	.	C	A	365.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.695;ClippingRankSum=0.000;DP=1405;ExcessHet=3.0103;FS=5.589;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=-7.476;QD=0.26;ReadPosRankSum=2.143;SOR=1.189;set=HC	GT:AD:AF:DP	0/1:1292,103:0.07:1395
chr7	100550389	.	A	G	3554.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.438;ClippingRankSum=0.000;DP=1386;ExcessHet=3.0103;FS=1.772;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=-2.995;QD=2.58;ReadPosRankSum=2.577;SOR=0.904;set=HC	GT:AD:AF:DP	0/1:1212,164:0.12:1376
chr7	100550395	.	A	G	2894.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.332;ClippingRankSum=0.000;DP=1378;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=-1.178;QD=2.12;ReadPosRankSum=2.760;SOR=0.852;set=HC	GT:AD:AF:DP	0/1:1211,156:0.11:1367
chr7	100550396	rs74213821	G	C	18287.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.215;ClippingRankSum=0.000;DB;DP=1377;ExcessHet=3.0103;FS=2.522;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=-4.710;QD=13.43;ReadPosRankSum=1.217;SOR=0.581;set=HC	GT:AD:AF:DP	0/1:832,530:0.39:1362
chr7	100550399	.	G	C	395.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.205;ClippingRankSum=0.000;DP=1384;ExcessHet=3.0103;FS=5.689;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=-10.102;QD=0.29;ReadPosRankSum=2.049;SOR=1.313;set=HC	GT:AD:AF:DP	0/1:1271,104:0.08:1375
chr7	100550400	.	G	A	3508.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.501;ClippingRankSum=0.000;DP=1389;ExcessHet=3.0103;FS=1.710;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=1.461;QD=2.54;ReadPosRankSum=2.433;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:1199,181:0.13:1380
chr7	100550421	.	C	A	275.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.600;ClippingRankSum=0.000;DP=1388;ExcessHet=3.0103;FS=4.072;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-7.198;QD=0.20;ReadPosRankSum=1.760;SOR=1.256;set=HC	GT:AD:AF:DP	0/1:1280,99:0.07:1379
chr7	100550427	.	C	T	62.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.492;ClippingRankSum=0.000;DP=1374;ExcessHet=3.0103;FS=4.048;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=-6.446;QD=0.05;ReadPosRankSum=2.186;SOR=1.218;set=HC	GT:AD:AF:DP	0/1:1273,92:0.07:1365
chr7	100550432	rs111924697	C	T	3397.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.079;ClippingRankSum=0.000;DB;DP=1342;ExcessHet=3.0103;FS=0.803;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.678;QD=2.55;ReadPosRankSum=-1.828;SOR=0.856;set=HC	GT:AD:AF:DP	0/1:1155,176:0.13:1331
chr7	100550439	rs79004610	C	T	3025.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.594;ClippingRankSum=0.000;DB;DP=1309;ExcessHet=3.0103;FS=4.355;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.627;QD=2.33;ReadPosRankSum=-0.160;SOR=1.363;set=HC	GT:AD:AF:DP	0/1:1150,150:0.12:1300
chr7	100550442	.	C	T	3951.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.881;ClippingRankSum=0.000;DP=1296;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-4.397;QD=3.07;ReadPosRankSum=-1.543;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:1114,173:0.13:1287
chr7	100550443	.	A	G	126.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.522;ClippingRankSum=0.000;DP=1288;ExcessHet=3.0103;FS=4.114;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=0.539;QD=0.10;ReadPosRankSum=-1.243;SOR=1.318;set=HC	GT:AD:AF:DP	0/1:1193,86:0.07:1279
chr7	100550447	.	C	T	6310.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.336;ClippingRankSum=0.000;DP=1252;ExcessHet=3.0103;FS=2.361;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=-1.277;QD=5.08;ReadPosRankSum=0.336;SOR=0.580;set=HC	GT:AD:AF:DP	0/1:1018,224:0.18:1242
chr7	100550452	.	A	T	6588.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.113;ClippingRankSum=0.000;DP=1204;ExcessHet=3.0103;FS=1.474;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=-1.969;QD=5.52;ReadPosRankSum=0.223;SOR=0.537;set=HC	GT:AD:AF:DP	0/1:971,223:0.19:1194
chr7	100550463	.	T	G	16723.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.592;ClippingRankSum=0.000;DP=1074;ExcessHet=3.0103;FS=1.155;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-2.269;QD=15.72;ReadPosRankSum=-3.115;SOR=0.800;set=HC	GT:AD:AF:DP	0/1:672,392:0.37:1064
chr7	100550466	rs75319202	C	T	9185.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.822;ClippingRankSum=0.000;DB;DP=1036;ExcessHet=3.0103;FS=1.282;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-2.929;QD=8.95;ReadPosRankSum=-2.276;SOR=0.868;set=HC	GT:AD:AF:DP	0/1:760,266:0.26:1026
chr7	100550467	rs78312717	A	G	11534.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.122;ClippingRankSum=0.000;DB;DP=1021;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-2.576;QD=11.41;ReadPosRankSum=-4.977;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:696,315:0.31:1011
chr7	100550473	rs77401364	G	A	10585.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.436;ClippingRankSum=0.000;DB;DP=984;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-2.557;QD=11.53;ReadPosRankSum=-3.855;SOR=0.642;set=HC	GT:AD:AF:DP	0/1:629,289:0.31:918
chr7	100550478	rs79412130	C	T	10703.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.776;ClippingRankSum=0.000;DB;DP=946;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-2.529;QD=11.44;ReadPosRankSum=-1.080;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:637,299:0.32:936
chr7	100550490	.	G	A	2036.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.446;ClippingRankSum=0.000;DP=965;ExcessHet=3.0103;FS=0.786;MLEAC=1;MLEAF=0.500;MQ=59.83;MQRankSum=2.065;QD=2.15;ReadPosRankSum=-0.254;SOR=0.605;set=HC	GT:AD:AF:DP	0/1:821,126:0.13:947
chr7	100550501	.	T	G	1058.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.848;ClippingRankSum=0.000;DP=846;ExcessHet=3.0103;FS=3.283;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=0.441;QD=1.28;ReadPosRankSum=-0.027;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:742,86:0.10:828
chr7	100550505	rs74715834	C	T	1529.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.221;ClippingRankSum=0.000;DB;DP=822;ExcessHet=3.0103;FS=6.031;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=1.802;QD=1.90;ReadPosRankSum=-1.904;SOR=1.153;set=HC	GT:AD:AF:DP	0/1:719,87:0.11:806
chr7	100550507	rs139308151	C	T	1538.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.470;ClippingRankSum=0.000;DB;DP=812;ExcessHet=3.0103;FS=6.013;MLEAC=1;MLEAF=0.500;MQ=59.74;MQRankSum=1.909;QD=1.93;ReadPosRankSum=-2.307;SOR=1.211;set=HC	GT:AD:AF:DP	0/1:708,89:0.11:797
chr7	100550508	.	A	T	6151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.564;ClippingRankSum=0.000;DP=794;ExcessHet=3.0103;FS=0.584;MLEAC=1;MLEAF=0.500;MQ=59.71;MQRankSum=-8.462;QD=9.92;ReadPosRankSum=0.011;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:445,175:0.28:620
chr7	100550510	.	A	C	5133.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.030;ClippingRankSum=0.000;DP=777;ExcessHet=3.0103;FS=3.066;MLEAC=1;MLEAF=0.500;MQ=59.67;MQRankSum=-2.633;QD=7.56;ReadPosRankSum=0.620;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:527,152:0.22:679
chr7	100550511	rs74435283	G	C	1686.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.776;ClippingRankSum=0.000;DB;DP=775;ExcessHet=3.0103;FS=0.833;MLEAC=1;MLEAF=0.500;MQ=59.67;MQRankSum=1.976;QD=2.43;ReadPosRankSum=-0.177;SOR=0.901;set=HC	GT:AD:AF:DP	0/1:612,82:0.12:694
chr7	100550514	rs78262970	T	C	1499.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.206;ClippingRankSum=0.000;DB;DP=751;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.66;MQRankSum=-14.492;QD=2.03;ReadPosRankSum=0.826;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:654,83:0.11:737
chr7	100550515	.	T	A	4181.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.626;ClippingRankSum=0.000;DP=751;ExcessHet=3.0103;FS=2.298;MLEAC=1;MLEAF=0.500;MQ=59.66;MQRankSum=1.718;QD=5.67;ReadPosRankSum=0.064;SOR=0.805;set=HC	GT:AD:AF:DP	0/1:599,138:0.19:737
chr7	100550520	rs77013428	C	T	1655.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.875;ClippingRankSum=0.000;DB;DP=726;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.65;MQRankSum=-14.217;QD=2.33;ReadPosRankSum=0.616;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:629,83:0.12:712
chr7	100550522	rs76664943	C	G	1692.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.465;ClippingRankSum=0.000;DB;DP=713;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.65;MQRankSum=-14.072;QD=2.42;ReadPosRankSum=0.438;SOR=0.789;set=HC	GT:AD:AF:DP	0/1:616,83:0.12:699
chr7	100550525	.	C	T	390.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.955;ClippingRankSum=0.000;DP=699;ExcessHet=3.0103;FS=5.464;MLEAC=1;MLEAF=0.500;MQ=59.64;MQRankSum=0.293;QD=0.57;ReadPosRankSum=-0.648;SOR=1.525;set=HC	GT:AD:AF:DP	0/1:630,56:0.08:686
chr7	100550534	.	C	G	219.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.033;ClippingRankSum=0.000;DP=649;ExcessHet=3.0103;FS=7.722;MLEAC=1;MLEAF=0.500;MQ=59.63;MQRankSum=0.059;QD=0.34;ReadPosRankSum=-2.215;SOR=1.675;set=HC	GT:AD:AF:DP	0/1:590,48:0.08:638
chr7	100550543	rs76777205	C	T	1840.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=6.309;ClippingRankSum=0.000;DB;DP=613;ExcessHet=3.0103;FS=8.667;MLEAC=1;MLEAF=0.500;MQ=59.47;MQRankSum=-11.696;QD=3.06;ReadPosRankSum=0.339;SOR=1.520;set=HC	GT:AD:AF:DP	0/1:520,81:0.13:601
chr7	100550544	rs75037819	A	C	1900.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=10.030;ClippingRankSum=0.000;DB;DP=613;ExcessHet=3.0103;FS=8.738;MLEAC=1;MLEAF=0.500;MQ=59.47;MQRankSum=-11.696;QD=3.16;ReadPosRankSum=0.436;SOR=1.532;set=HC	GT:AD:AF:DP	0/1:520,81:0.13:601
chr7	100550552	rs77957081	A	T	2245.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.920;ClippingRankSum=0.000;DB;DP=601;ExcessHet=3.0103;FS=13.939;MLEAC=1;MLEAF=0.500;MQ=59.47;MQRankSum=-11.420;QD=3.81;ReadPosRankSum=-0.493;SOR=1.801;set=HC	GT:AD:AF:DP	0/1:504,86:0.15:590
chr7	100550562	rs78069287	G	A	2368.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=10.245;ClippingRankSum=0.000;DB;DP=570;ExcessHet=3.0103;FS=15.140;MLEAC=1;MLEAF=0.500;MQ=59.38;MQRankSum=-10.563;QD=4.23;ReadPosRankSum=-2.792;SOR=1.879;set=HC	GT:AD:AF:DP	0/1:471,89:0.16:560
chr7	100550563	rs77561545	A	G	2419.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=13.345;ClippingRankSum=0.000;DB;DP=559;ExcessHet=3.0103;FS=16.851;MLEAC=1;MLEAF=0.500;MQ=59.38;MQRankSum=-10.173;QD=4.41;ReadPosRankSum=-3.515;SOR=1.992;set=HC	GT:AD:AF:DP	0/1:460,89:0.16:549
chr7	100550564	rs75269566	C	T	2431.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=4.534;ClippingRankSum=0.000;DB;DP=554;ExcessHet=3.0103;FS=17.073;MLEAC=1;MLEAF=0.500;MQ=59.37;MQRankSum=-10.189;QD=4.47;ReadPosRankSum=-3.937;SOR=2.095;set=HC	GT:AD:AF:DP	0/1:456,88:0.16:544
chr7	100550568	rs78115301	T	A	2512.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.132;ClippingRankSum=0.000;DB;DP=554;ExcessHet=3.0103;FS=18.855;MLEAC=1;MLEAF=0.500;MQ=59.37;MQRankSum=-9.902;QD=4.62;ReadPosRankSum=-5.693;SOR=2.111;set=HC	GT:AD:AF:DP	0/1:452,92:0.17:544
chr7	100550570	rs76035900	T	C	8623.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=5.324;ClippingRankSum=0.000;DB;DP=558;ExcessHet=3.0103;FS=16.786;MLEAC=1;MLEAF=0.500;MQ=59.38;MQRankSum=-6.529;QD=15.79;ReadPosRankSum=-2.909;SOR=1.466;set=HC	GT:AD:AF:DP	0/1:323,223:0.41:546
chr7	100550571	rs146166922	G	C	4512.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.142;ClippingRankSum=0.000;DB;DP=566;ExcessHet=3.0103;FS=4.637;MLEAC=1;MLEAF=0.500;MQ=59.38;MQRankSum=-3.177;QD=9.81;ReadPosRankSum=0.930;SOR=0.984;set=HC	GT:AD:AF:DP	0/1:329,131:0.28:460
chr7	100550577	.	C	T	3931.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.195;ClippingRankSum=0.000;DP=550;ExcessHet=3.0103;FS=0.631;MLEAC=1;MLEAF=0.500;MQ=59.39;MQRankSum=1.371;QD=7.31;ReadPosRankSum=2.902;SOR=0.797;set=HC	GT:AD:AF:DP	0/1:415,123:0.23:538
chr7	100550583	rs71888665	AACCACC	A	4067.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-3.271;ClippingRankSum=0.000;DB;DP=529;ExcessHet=3.0103;FS=2.941;MLEAC=1;MLEAF=0.500;MQ=59.51;MQRankSum=1.091;QD=7.85;ReadPosRankSum=-0.096;SOR=0.963;set=HC	GT:AD:AF:DP	0/1:395,123:0.24:518
chr7	100550589	rs80123018	C	G	623.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.282;ClippingRankSum=0.000;DB;DP=514;ExcessHet=3.0103;FS=11.380;MLEAC=1;MLEAF=0.500;MQ=59.49;MQRankSum=-12.919;QD=1.24;ReadPosRankSum=-5.015;SOR=2.159;set=HC	GT:AD:AF:DP	0/1:458,45:0.09:503
chr7	100550595	rs80315860	T	C	755.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=7.890;ClippingRankSum=0.000;DB;DP=530;ExcessHet=3.0103;FS=13.463;MLEAC=1;MLEAF=0.500;MQ=59.56;MQRankSum=-11.214;QD=1.45;ReadPosRankSum=-6.761;SOR=2.287;set=HC	GT:AD:AF:DP	0/1:470,51:0.10:521
chr7	100550596	rs74991890	G	A	791.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.379;ClippingRankSum=0.000;DB;DP=529;ExcessHet=3.0103;FS=15.581;MLEAC=1;MLEAF=0.500;MQ=59.57;MQRankSum=-10.916;QD=1.52;ReadPosRankSum=-6.690;SOR=2.432;set=HC	GT:AD:AF:DP	0/1:470,50:0.10:520
chr7	100550601	rs79112841	C	A	4062.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-5.649;ClippingRankSum=0.000;DB;DP=545;ExcessHet=3.0103;FS=1.329;MLEAC=1;MLEAF=0.500;MQ=59.47;MQRankSum=1.428;QD=7.57;ReadPosRankSum=4.120;SOR=0.879;set=HC	GT:AD:AF:DP	0/1:411,126:0.23:537
chr7	100550602	rs80036331	T	A	6836.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.358;ClippingRankSum=0.000;DB;DP=554;ExcessHet=3.0103;FS=12.998;MLEAC=1;MLEAF=0.500;MQ=59.48;MQRankSum=-5.532;QD=12.52;ReadPosRankSum=-1.410;SOR=1.389;set=HC	GT:AD:AF:DP	0/1:360,186:0.34:546
chr7	100550604	rs74878158	C	A	4074.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.918;ClippingRankSum=0.000;DB;DP=562;ExcessHet=3.0103;FS=1.320;MLEAC=1;MLEAF=0.500;MQ=59.42;MQRankSum=1.188;QD=7.36;ReadPosRankSum=3.014;SOR=0.831;set=HC	GT:AD:AF:DP	0/1:423,131:0.24:554
chr7	100551308	.	A	G	3482.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.226;ClippingRankSum=0.000;DP=1476;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.93;MQRankSum=-14.022;QD=2.59;ReadPosRankSum=0.293;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:1179,167:0.12:1346
chr7	100551309	.	G	T	5764.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.614;ClippingRankSum=0.000;DP=1489;ExcessHet=3.0103;FS=2.532;MLEAC=1;MLEAF=0.500;MQ=58.94;MQRankSum=-18.372;QD=4.31;ReadPosRankSum=1.394;SOR=1.007;set=HC	GT:AD:AF:DP	0/1:1121,215:0.16:1336
chr7	100551311	.	CTG	C	854.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=8.335;ClippingRankSum=0.000;DP=1487;ExcessHet=3.0103;FS=5.339;MLEAC=1;MLEAF=0.500;MQ=58.97;MQRankSum=-9.250;QD=0.63;ReadPosRankSum=-2.003;SOR=1.582;set=HC	GT:AD:AF:DP	0/1:1250,108:0.08:1358
chr7	100551314	.	C	CAT	843.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=12.652;ClippingRankSum=0.000;DP=1451;ExcessHet=3.0103;FS=6.971;MLEAC=1;MLEAF=0.500;MQ=58.95;MQRankSum=-14.741;QD=0.68;ReadPosRankSum=-5.965;SOR=1.540;set=HC	GT:AD:AF:DP	0/1:1143,106:0.08:1249
chr7	100551318	.	G	A	261.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.546;ClippingRankSum=0.000;DP=1406;ExcessHet=3.0103;FS=2.450;MLEAC=1;MLEAF=0.500;MQ=59.03;MQRankSum=-7.838;QD=0.20;ReadPosRankSum=-1.940;SOR=1.286;set=HC	GT:AD:AF:DP	0/1:1192,90:0.07:1282
chr7	100551322	rs76260977	C	T	4851.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.873;ClippingRankSum=0.000;DB;DP=1376;ExcessHet=3.0103;FS=1.619;MLEAC=1;MLEAF=0.500;MQ=59.06;MQRankSum=-19.974;QD=3.87;ReadPosRankSum=-6.272;SOR=0.896;set=HC	GT:AD:AF:DP	0/1:1067,186:0.15:1253
chr7	100551326	.	C	CA	4302.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.303;ClippingRankSum=0.000;DP=1336;ExcessHet=3.0103;FS=0.760;MLEAC=1;MLEAF=0.500;MQ=59.07;MQRankSum=-19.911;QD=3.54;ReadPosRankSum=-7.981;SOR=0.852;set=HC	GT:AD:AF:DP	0/1:1040,174:0.14:1214
chr7	100551329	.	C	CA	3916.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.512;ClippingRankSum=0.000;DP=1324;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.10;MQRankSum=-19.661;QD=3.26;ReadPosRankSum=-9.489;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:1036,166:0.14:1202
chr7	100551331	.	GTA	G	3688.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.331;ClippingRankSum=0.000;DP=1325;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.16;MQRankSum=-19.547;QD=3.07;ReadPosRankSum=-9.922;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:1049,152:0.13:1201
chr7	100551370	rs78124935	AG	TC	4660.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.274;ClippingRankSum=0.000;DB;DP=1235;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.83;MQRankSum=-3.350;QD=3.96;ReadPosRankSum=-8.149;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:999,178:0.15:1177
chr7	100551376	rs75808610	C	A	6153.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.844;ClippingRankSum=0.000;DB;DP=1270;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-3.088;QD=5.03;ReadPosRankSum=-7.010;SOR=0.764;set=HC	GT:AD:AF:DP	0/1:1011,212:0.17:1223
chr7	100551390	rs77795035	T	A	8784.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.336;ClippingRankSum=0.000;DB;DP=1270;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=-2.663;QD=7.03;ReadPosRankSum=-4.110;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:975,275:0.22:1250
chr7	100551392	rs75008337	CG	TA	9033.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.178;ClippingRankSum=0.000;DB;DP=1262;ExcessHet=3.0103;FS=0.633;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=-2.616;QD=7.24;ReadPosRankSum=-3.664;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:965,282:0.23:1247
chr7	100551397	rs79748732	G	T	9676.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.760;ClippingRankSum=0.000;DB;DP=1281;ExcessHet=3.0103;FS=0.620;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-2.543;QD=7.62;ReadPosRankSum=-1.773;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:970,300:0.24:1270
chr7	100551400	rs75496565	G	A	9869.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.761;ClippingRankSum=0.000;DB;DP=1293;ExcessHet=3.0103;FS=0.612;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-2.511;QD=7.69;ReadPosRankSum=-0.517;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:974,309:0.24:1283
chr7	100551433	rs73398732	T	C	8653.77	.	AC=1;AF=0.500;AN=2;DB;DP=1385;set=Intersection	GT:AD:AF:DP	0/1:903,477:0.35:1380
chr7	100551461	rs78826835	C	G	21211.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.976;ClippingRankSum=0.000;DB;DP=1473;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.45;ReadPosRankSum=2.537;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:896,572:0.39:1468
chr7	100551471	rs78831742	T	C	23182.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.488;ClippingRankSum=0.000;DB;DP=1497;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.55;ReadPosRankSum=1.185;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:886,605:0.41:1491
chr7	100551473	rs79233494	G	C	23373.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.584;ClippingRankSum=0.000;DB;DP=1521;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.44;ReadPosRankSum=1.332;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:900,614:0.41:1514
chr7	100551476	rs74460367	C	T	23403.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.199;ClippingRankSum=0.000;DB;DP=1546;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.22;ReadPosRankSum=0.842;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:907,631:0.41:1538
chr7	100551502	rs28515787	A	C	7874.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.889;ClippingRankSum=0.000;DB;DP=1587;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=-0.910;QD=5.00;ReadPosRankSum=-0.484;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:1114,462:0.29:1576
chr7	100551565	rs73163757	AT	GC	11567.77	.	AC=1;AF=0.500;AN=2;DB;DP=1390;JOINED;set=Intersection	GT:AD:AF:DP	0/1:792,577:0.42:1369
chr7	100551578	rs78584246	T	G	20788.77	.	AC=1;AF=0.500;AN=2;DB;DP=1337;set=Intersection	GT:AD:AF:DP	0/1:770,552:0.42:1322
chr7	100551626	rs73714238	T	C	16922.77	.	AC=1;AF=0.500;AN=2;DB;DP=1231;set=Intersection	GT:AD:AF:DP	0/1:728,486:0.40:1214
chr7	100551637	rs112753297	C	CCAA	17455.73	.	AC=1;AF=0.500;AN=2;DB;DP=1193;set=Intersection	GT:AD:AF:DP	0/1:719,460:0.39:1179
chr7	100551646	rs77153975	A	G	16354.77	.	AC=1;AF=0.500;AN=2;DB;DP=1137;set=Intersection	GT:AD:AF:DP	0/1:692,435:0.39:1127
chr7	100551662	rs78684063	C	T	16034.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.514;ClippingRankSum=0.000;DB;DP=1098;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=1.809;QD=14.71;ReadPosRankSum=-0.824;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:676,414:0.38:1090
chr7	100551666	rs74318947	A	T	15814.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.182;ClippingRankSum=0.000;DB;DP=1089;ExcessHet=3.0103;FS=0.536;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=1.797;QD=14.63;ReadPosRankSum=-1.315;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:667,414:0.38:1081
chr7	100551687	rs73714240	T	C	15413.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.110;ClippingRankSum=0.000;DB;DP=1073;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=1.790;QD=14.43;ReadPosRankSum=-1.338;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:657,411:0.38:1068
chr7	100551692	rs73714242	C	T	15463.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.595;ClippingRankSum=0.000;DB;DP=1075;ExcessHet=3.0103;FS=0.533;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=1.764;QD=14.47;ReadPosRankSum=-1.684;SOR=0.767;set=HC	GT:AD:AF:DP	0/1:650,419:0.39:1069
chr7	100551711	rs113829577	T	C	6168.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.294;ClippingRankSum=0.000;DB;DP=1130;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=-0.939;QD=5.50;ReadPosRankSum=0.149;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:778,344:0.31:1122
chr7	100551719	rs73714243	C	T	17429.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.479;ClippingRankSum=0.000;DB;DP=1150;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=1.676;QD=15.22;ReadPosRankSum=-0.773;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:668,477:0.42:1145
chr7	100551729	rs73714244	C	T	17076.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.273;ClippingRankSum=0.000;DB;DP=1195;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=1.687;QD=14.31;ReadPosRankSum=0.669;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:700,493:0.41:1193
chr7	100551773	rs73398734	C	A	24287.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.715;ClippingRankSum=0.000;DB;DP=1434;ExcessHet=3.0103;FS=1.112;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=1.603;QD=16.97;ReadPosRankSum=0.004;SOR=0.824;set=HC	GT:AD:AF:DP	0/1:804,627:0.44:1431
chr7	100551778	rs73714247	G	A	25315.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.720;ClippingRankSum=0.000;DB;DP=1487;ExcessHet=3.0103;FS=1.757;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=1.602;QD=17.05;ReadPosRankSum=-0.058;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:834,651:0.44:1485
chr7	100551793	rs73398735	G	T	24893.77	.	AC=1;AF=0.500;AN=2;DB;DP=1594;set=Intersection	GT:AD:AF:DP	0/1:896,696:0.44:1592
chr7	100551840	rs78273697	T	A	29834.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.287;ClippingRankSum=0.000;DB;DP=1767;ExcessHet=3.0103;FS=1.100;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.94;ReadPosRankSum=0.967;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:978,783:0.44:1761
chr7	100551842	rs75365561	CT	TC	30441.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.409;ClippingRankSum=0.000;DB;DP=1768;ExcessHet=3.0103;FS=1.099;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.28;ReadPosRankSum=1.525;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:984,778:0.44:1762
chr7	100551849	rs77242346	A	T	29958.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.140;ClippingRankSum=0.000;DB;DP=1780;ExcessHet=3.0103;FS=1.736;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.92;ReadPosRankSum=1.098;SOR=0.778;set=HC	GT:AD:AF:DP	0/1:981,790:0.45:1771
chr7	100552018	rs76249962	T	G	28826.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.331;ClippingRankSum=0.000;DB;DP=1831;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.83;ReadPosRankSum=-0.270;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:1054,767:0.42:1821
chr7	100552018	.	TCC	GCT	2944	.	AC=1;AF=0.500;AN=2;BRF=0.47;FR=0.5000;HP=3;HapScore=1;MGOF=13;MMLQ=24;MQ=60.0;NF=255;NR=260;PP=2944;QD=20;SC=TCCAGTGTTCTCCACTACCAT;SbPval=0.53;Source=Platypus;TC=1267;TCF=626;TCR=641;TR=515;WE=100552028;WS=100552008;set=Platypus	GT:AD:AF:DP	1/0:752,515:0.41:1267
chr7	100552020	rs78680358	C	T	28819.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.371;ClippingRankSum=0.000;DB;DP=1834;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.79;ReadPosRankSum=-0.558;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:1061,764:0.42:1825
chr7	100552044	rs73714250	T	G	13947.77	.	AC=1;AF=0.500;AN=2;DB;DP=1739;set=Intersection	GT:AD:AF:DP	0/1:1016,715:0.41:1731
chr7	100552094	rs62483698	G	C	13988.77	.	AC=1;AF=0.500;AN=2;DB;DP=1558;set=Intersection	GT:AD:AF:DP	0/1:883,669:0.43:1552
chr7	100552117	rs62483699	G	T	12939.77	.	AC=1;AF=0.500;AN=2;DB;DP=1490;set=Intersection	GT:AD:AF:DP	0/1:851,630:0.43:1481
chr7	100552135	rs62483700	T	C	13919.77	.	AC=1;AF=0.500;AN=2;DB;DP=1508;set=Intersection	GT:AD:AF:DP	0/1:843,652:0.44:1495
chr7	100552251	rs9691900	T	C	12708.77	.	AC=1;AF=0.500;AN=2;DB;DP=1253;set=Intersection	GT:AD:AF:DP	0/1:649,595:0.48:1244
chr7	100552311	rs12535515	C	T	17568.77	.	AC=1;AF=0.500;AN=2;DB;DP=1038;set=Intersection	GT:AD:AF:DP	0/1:285,746:0.72:1031
chr7	100552338	rs73398798	C	T	8913.77	.	AC=1;AF=0.500;AN=2;DB;DP=939;set=Intersection	GT:AD:AF:DP	0/1:512,421:0.45:933
chr7	100552358	rs73714254	C	G	13775.77	.	AC=1;AF=0.500;AN=2;DB;DP=872;set=Intersection	GT:AD:AF:DP	0/1:507,359:0.41:866
chr7	100552371	rs73714255	C	G	13444.77	.	AC=1;AF=0.500;AN=2;DB;DP=861;set=Intersection	GT:AD:AF:DP	0/1:503,351:0.41:854
chr7	100552384	rs75597914	A	G	13333.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.297;ClippingRankSum=0.000;DB;DP=833;ExcessHet=3.0103;FS=2.460;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.10;ReadPosRankSum=0.470;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:482,346:0.42:828
chr7	100552390	rs73714257	T	C	13375.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.313;ClippingRankSum=0.000;DB;DP=807;ExcessHet=3.0103;FS=1.763;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.66;ReadPosRankSum=0.025;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:466,337:0.42:803
chr7	100552412	rs73714259	T	C	13052.77	.	AC=1;AF=0.500;AN=2;DB;DP=800;set=Intersection	GT:AD:AF:DP	0/1:464,332:0.42:796
chr7	100552435	rs76244845	TC	AT	13691.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.896;ClippingRankSum=0.000;DB;DP=865;ExcessHet=3.0103;FS=0.538;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.94;ReadPosRankSum=0.568;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:507,352:0.41:859
chr7	100552440	rs80290400	C	T	13421.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.304;ClippingRankSum=0.000;DB;DP=887;ExcessHet=3.0103;FS=0.543;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.25;ReadPosRankSum=0.586;SOR=0.777;set=HC	GT:AD:AF:DP	0/1:520,360:0.41:880
chr7	100552535	rs73163758	GT	AC	33216.77	.	AC=1;AF=0.500;AN=2;DB;DP=1987;JOINED;set=Intersection	GT:AD:AF:DP	0/1:1124,851:0.43:1975
chr7	100552549	rs73163760	CT	AC	20292.77	.	AC=1;AF=0.500;AN=2;DB;DP=2219;JOINED;set=Intersection	GT:AD:AF:DP	0/1:1222,973:0.44:2195
chr7	100552644	rs2904850	C	A	76828.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.090;ClippingRankSum=0.000;DB;DP=3545;ExcessHet=3.0103;FS=0.570;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.96;ReadPosRankSum=-1.596;SOR=0.761;set=HC	GT:AD:AF:DP	0/1:1058,2440:0.70:3498
chr7	100552657	rs75471530	A	G	46852.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.980;ClippingRankSum=0.000;DB;DP=3469;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.65;ReadPosRankSum=0.509;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:2108,1324:0.39:3432
chr7	100552657	.	ACT	GCC	2944	.	AC=1;AF=0.500;AN=2;BRF=0.54;FR=0.5000;HP=3;HapScore=1;MGOF=36;MMLQ=24;MQ=59.98;NF=472;NR=423;PP=2944;QD=20;SC=CCCACCCACCACTAGGACTTC;SbPval=0.58;Source=Platypus;TC=2248;TCF=1175;TCR=1073;TR=895;WE=100552683;WS=100552634;set=Platypus	GT:AD:AF:DP	1/0:1353,895:0.40:2248
chr7	100552659	rs78182596	T	C	50888.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.653;ClippingRankSum=0.000;DB;DP=3459;ExcessHet=3.0103;FS=0.529;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.88;ReadPosRankSum=-0.221;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:2092,1329:0.39:3421
chr7	100552673	rs200599465	C	T	41716.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.170;ClippingRankSum=0.000;DB;DP=3439;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.24;ReadPosRankSum=0.317;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:2104,1304:0.38:3408
chr7	100552673	.	CAC	TAT	2944	.	AC=1;AF=0.500;AN=2;BRF=0.54;FR=0.5000;HP=2;HapScore=1;MGOF=36;MMLQ=26;MQ=59.99;NF=449;NR=446;PP=2944;QD=20;SC=ACTTCAGAGACACCAGTGGCC;SbPval=0.51;Source=Platypus;TC=2257;TCF=1134;TCR=1123;TR=895;WE=100552683;WS=100552634;set=Platypus	GT:AD:AF:DP	1/0:1362,895:0.40:2257
chr7	100552675	rs73163764	C	T	48513.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.585;ClippingRankSum=0.000;DB;DP=3429;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.27;ReadPosRankSum=0.569;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:2096,1304:0.38:3400
chr7	100552711	rs75799835	T	A	47651.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.586;ClippingRankSum=0.000;DB;DP=3301;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.52;ReadPosRankSum=1.419;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:2006,1276:0.39:3282
chr7	100552711	.	TCA	ACG	2944	.	AC=1;AF=0.500;AN=2;BRF=0.52;FR=0.5000;HP=1;HapScore=1;MGOF=39;MMLQ=22;MQ=59.99;NF=402;NR=478;PP=2944;QD=20;SC=CACCCTTACATCACGCAGGAC;SbPval=0.6;Source=Platypus;TC=2251;TCF=1059;TCR=1192;TR=880;WE=100552747;WS=100552700;set=Platypus	GT:AD:AF:DP	1/0:1371,880:0.39:2251
chr7	100552713	rs75130157	A	G	48112.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.657;ClippingRankSum=0.000;DB;DP=3305;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.63;ReadPosRankSum=1.765;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:2013,1276:0.39:3289
chr7	100552727	rs74529310	G	C	47326.77	.	AC=1;AF=0.500;AN=2;DB;DP=3182;set=Intersection	GT:AD:AF:DP	0/1:1920,1249:0.39:3169
chr7	100552738	rs79874934	CA	TG	46318.77	.	AC=1;AF=0.500;AN=2;DB;DP=3135;JOINED;set=Intersection	GT:AD:AF:DP	0/1:1915,1203:0.39:3118
chr7	100552788	rs73398800	C	T	23605.77	.	AC=1;AF=0.500;AN=2;DB;DP=2751;set=Intersection	GT:AD:AF:DP	0/1:1561,1160:0.43:2721
chr7	100552837	rs73714264	G	A	33439.77	.	AC=1;AF=0.500;AN=2;DB;DP=2188;set=Intersection	GT:AD:AF:DP	0/1:1229,940:0.43:2169
chr7	100552854	rs73714265	G	A	33386.77	.	AC=1;AF=0.500;AN=2;DB;DP=1932;set=Intersection	GT:AD:AF:DP	0/1:1061,859:0.45:1920
chr7	100552867	rs73714266	T	C	29892.77	.	AC=1;AF=0.500;AN=2;DB;DP=1740;set=Intersection	GT:AD:AF:DP	0/1:947,783:0.45:1730
chr7	100552915	rs2904852	A	C	37661.77	.	AC=2;AF=1.00;AN=2;DB;DP=1240;set=Intersection	GT:AD:AF:DP	1/1:2,1235:1.00:1237
chr7	100552978	rs73163765	T	C	18160.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.792;ClippingRankSum=0.000;DB;DP=1028;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.72;ReadPosRankSum=0.574;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:551,474:0.46:1025
chr7	100552984	rs73163766	T	C	18390.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.313;ClippingRankSum=0.000;DB;DP=1024;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.01;ReadPosRankSum=0.424;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:550,471:0.46:1021
chr7	100553002	rs68094465	A	G	16756.77	.	AC=1;AF=0.500;AN=2;DB;DP=981;set=Intersection	GT:AD:AF:DP	0/1:526,452:0.46:978
chr7	100553073	rs73714269	T	A	12442.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.837;ClippingRankSum=0.000;DB;DP=744;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.81;ReadPosRankSum=0.407;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:406,334:0.45:740
chr7	100553077	rs73714270	A	C	12285.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.298;ClippingRankSum=0.000;DB;DP=698;ExcessHet=3.0103;FS=1.123;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.65;ReadPosRankSum=-0.170;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:380,316:0.45:696
chr7	100553117	rs73400705	G	A	4188.77	.	AC=1;AF=0.500;AN=2;DB;DP=448;set=Intersection	GT:AD:AF:DP	0/1:250,197:0.44:447
chr7	100555116	rs34281234	A	AT	1955.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.530;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.78;MQRankSum=0.265;QD=12.07;ReadPosRankSum=2.036;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:37,125:0.77:162
chr7	100606332	.	ATT	A,AT	815.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.322;ClippingRankSum=0.000;DP=155;ExcessHet=3.0103;FS=1.123;MLEAC=1,1;MLEAF=0.500,0.500;MQ=53.21;MQRankSum=-2.620;QD=8.16;ReadPosRankSum=-0.091;SOR=0.993;set=HC	GT:AD:AF:DP	1/2:21,39,40:0.39,0.40:100
chr7	100606918	rs4316092	A	G	2360.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr7	100607615	rs2904860	C	T	416.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.455;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=4.441;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.89;ReadPosRankSum=0.012;SOR=0.347;set=HC	GT:AD:AF:DP	0/1:113,31:0.22:144
chr7	100607640	.	G	GCT	3968.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.184;ClippingRankSum=0.000;DP=232;ExcessHet=3.0103;FS=10.754;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.26;ReadPosRankSum=0.381;SOR=1.316;set=HC	GT:AD:AF:DP	0/1:136,94:0.41:230
chr7	100607642	.	C	T	2962	.	AC=1;AF=0.500;AN=2;BRF=0.38;FR=0.5000;HP=2;HapScore=1;MGOF=30;MMLQ=27;MQ=60.0;NF=65;NR=21;PP=2962;QD=20;SC=TGACCTCTGCCCTCTTTCCCC;SbPval=0.8;Source=Platypus;TC=211;TCF=148;TCR=63;TR=86;WE=100607654;WS=100607632;set=Platypus	GT:AD:AF:DP	0/1:125,86:0.41:211
chr7	100607643	.	CTCT	C,CCT	3977.73	.	AC=1,0;AF=0.500,0.00;AN=2;DP=253;set=Intersection	GT:AF:DP	0/1:0.43:252
chr7	100607700	.	CAT	C	10537.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.232;ClippingRankSum=0.000;DP=535;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.92;ReadPosRankSum=0.643;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:261,268:0.51:529
chr7	100607707	.	T	G	10910.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.753;ClippingRankSum=0.000;DP=550;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.91;ReadPosRankSum=-0.019;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:272,276:0.50:548
chr7	100607709	.	C	CCT	10977.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.321;ClippingRankSum=0.000;DP=567;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.43;ReadPosRankSum=0.185;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:283,282:0.50:565
chr7	100607851	rs6960854	C	G	4371.77	.	AC=1;AF=0.500;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	0/1:204,201:0.50:405
chr7	100607871	rs6960868	C	T	3201.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:165,151:0.48:316
chr7	100607903	rs6961167	G	A	1162.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:156,62:0.28:218
chr7	100608154	rs10250885	G	A	9895.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr7	100608158	rs79221376	A	G	1519.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=11.378;ClippingRankSum=0.000;DB;DP=325;ExcessHet=3.0103;FS=30.206;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=2.220;QD=4.69;ReadPosRankSum=1.221;SOR=3.220;set=HC	GT:AD:AF:DP	0/1:269,55:0.17:324
chr7	100608162	rs79761591	G	C	1596.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.507;ClippingRankSum=0.000;DB;DP=346;ExcessHet=3.0103;FS=34.347;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=2.232;QD=4.63;ReadPosRankSum=1.219;SOR=3.447;set=HC	GT:AD:AF:DP	0/1:287,58:0.17:345
chr7	100608165	rs76431635	A	G	1734.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=11.064;ClippingRankSum=0.000;DB;DP=365;ExcessHet=3.0103;FS=38.558;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=2.236;QD=4.77;ReadPosRankSum=1.215;SOR=3.597;set=HC	GT:AD:AF:DP	0/1:303,61:0.17:364
chr7	100608166	rs75884804	G	C	1893.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.492;ClippingRankSum=0.000;DB;DP=373;ExcessHet=3.0103;FS=40.687;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=2.222;QD=5.09;ReadPosRankSum=0.995;SOR=3.683;set=HC	GT:AD:AF:DP	0/1:309,63:0.17:372
chr7	100608180	rs77646533	C	G	2249.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.728;ClippingRankSum=0.000;DB;DP=470;ExcessHet=3.0103;FS=26.434;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=2.211;QD=4.80;ReadPosRankSum=0.480;SOR=3.930;set=HC	GT:AD:AF:DP	0/1:389,80:0.17:469
chr7	100608188	.	C	CT	2617.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.563;ClippingRankSum=0.000;DP=526;ExcessHet=3.0103;FS=31.537;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=3.075;QD=4.99;ReadPosRankSum=0.100;SOR=4.423;set=HC	GT:AD:AF:DP	0/1:433,92:0.18:525
chr7	100608190	.	C	T	2695.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=13.813;ClippingRankSum=0.000;DP=548;ExcessHet=3.0103;FS=31.414;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=3.091;QD=4.93;ReadPosRankSum=0.639;SOR=4.562;set=HC	GT:AD:AF:DP	0/1:452,95:0.17:547
chr7	100608194	.	C	CGTCTGGG	3706.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.919;ClippingRankSum=0.000;DP=575;ExcessHet=3.0103;FS=36.790;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=3.045;QD=6.47;ReadPosRankSum=0.150;SOR=4.853;set=HC	GT:AD:AF:DP	0/1:471,102:0.18:573
chr7	100608196	rs77373587	C	G	4071.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=15.795;ClippingRankSum=0.000;DB;DP=606;ExcessHet=3.0103;FS=42.191;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=2.813;QD=6.75;ReadPosRankSum=-0.712;SOR=4.414;set=HC	GT:AD:AF:DP	0/1:481,122:0.20:603
chr7	100608197	.	A	AGGG	4012.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=14.546;ClippingRankSum=0.000;DP=617;ExcessHet=3.0103;FS=44.595;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=2.816;QD=6.54;ReadPosRankSum=-0.706;SOR=4.505;set=HC	GT:AD:AF:DP	0/1:490,124:0.20:614
chr7	100608201	rs77005990	C	T	4150.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=14.749;ClippingRankSum=0.000;DB;DP=655;ExcessHet=3.0103;FS=33.877;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=2.685;QD=6.37;ReadPosRankSum=-1.716;SOR=3.414;set=HC	GT:AD:AF:DP	0/1:510,142:0.22:652
chr7	100608247	rs73163788	T	C	13696.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.567;ClippingRankSum=0.000;DB;DP=1311;ExcessHet=3.0103;FS=4.543;MLEAC=1;MLEAF=0.500;MQ=60.46;MQRankSum=11.678;QD=10.51;ReadPosRankSum=-3.124;SOR=1.034;set=HC	GT:AD:AF:DP	0/1:912,391:0.30:1303
chr7	100608255	rs79638688	C	G	15099.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.804;ClippingRankSum=0.000;DB;DP=1384;ExcessHet=3.0103;FS=6.747;MLEAC=1;MLEAF=0.500;MQ=60.67;MQRankSum=14.580;QD=10.99;ReadPosRankSum=-1.299;SOR=1.194;set=HC	GT:AD:AF:DP	0/1:960,414:0.30:1374
chr7	100608268	rs141757611	C	CCTTAACCCCTTGAT	20100.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.936;ClippingRankSum=0.000;DB;DP=1557;ExcessHet=3.0103;FS=10.586;MLEAC=1;MLEAF=0.500;MQ=61.10;MQRankSum=20.146;QD=13.06;ReadPosRankSum=1.313;SOR=1.403;set=HC	GT:AD:AF:DP	0/1:1069,470:0.31:1539
chr7	100608370	rs73714276	A	C	28778.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.305;ClippingRankSum=0.000;DB;DP=1666;ExcessHet=3.0103;FS=0.523;MLEAC=1;MLEAF=0.500;MQ=61.79;MQRankSum=18.968;QD=17.58;ReadPosRankSum=0.058;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:857,780:0.48:1637
chr7	100608375	rs75592954	G	A	28143.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.085;ClippingRankSum=0.000;DB;DP=1583;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.71;MQRankSum=17.988;QD=18.09;ReadPosRankSum=0.073;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:816,740:0.48:1556
chr7	100608406	rs77168191	AT	GC	18563.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.929;ClippingRankSum=0.000;DB;DP=1057;ExcessHet=3.0103;FS=1.816;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.55;MQRankSum=7.988;QD=17.78;ReadPosRankSum=0.935;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:557,487:0.47:1044
chr7	100608411	rs79831534	C	T	17901.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.813;ClippingRankSum=0.000;DB;DP=986;ExcessHet=3.0103;FS=0.551;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=5.812;QD=18.38;ReadPosRankSum=0.949;SOR=0.789;set=HC	GT:AD:AF:DP	0/1:517,457:0.47:974
chr7	100608416	rs77070494	C	T	17112.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.594;ClippingRankSum=0.000;DB;DP=927;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=3.173;QD=18.66;ReadPosRankSum=0.682;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:482,435:0.47:917
chr7	100608419	rs79505270	CT	GG	16901.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.694;ClippingRankSum=0.000;DB;DP=889;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.12;ReadPosRankSum=1.174;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:467,417:0.47:884
chr7	100608423	rs77841377	C	T	15540.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.611;ClippingRankSum=0.000;DB;DP=845;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.50;ReadPosRankSum=1.832;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:446,394:0.47:840
chr7	100608472	rs10251045	C	G	13346.77	.	AC=2;AF=1.00;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	1/1:0,371:1.00:371
chr7	100608493	rs77278976	T	C	5361.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=10.902;ClippingRankSum=0.000;DB;DP=270;ExcessHet=3.0103;FS=0.631;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.93;ReadPosRankSum=-1.156;SOR=0.774;set=HC	GT:AD:AF:DP	0/1:130,139:0.52:269
chr7	100608498	rs77518728	A	C	5334.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.759;ClippingRankSum=0.000;DB;DP=251;ExcessHet=3.0103;FS=0.651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.34;ReadPosRankSum=-1.915;SOR=0.791;set=HC	GT:AD:AF:DP	0/1:120,130:0.52:250
chr7	100608502	rs76981580	T	C	4911.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.096;ClippingRankSum=0.000;DB;DP=239;ExcessHet=3.0103;FS=2.248;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.64;ReadPosRankSum=-0.638;SOR=0.962;set=HC	GT:AD:AF:DP	0/1:119,119:0.50:238
chr7	100608572	rs10251414	G	C	2079.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:90,86:0.49:176
chr7	100608573	rs10251415	G	C	2342.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:86,93:0.52:179
chr7	100608613	.	G	C	1519.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.200;ClippingRankSum=0.000;DP=325;ExcessHet=3.0103;FS=1.523;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.86;ReadPosRankSum=-1.473;SOR=0.592;set=HC	GT:AD:AF:DP	0/1:226,87:0.28:313
chr7	100608710	rs62483706	A	C	8439.77	.	AC=1;AF=0.500;AN=2;DB;DP=901;set=Intersection	GT:AD:AF:DP	0/1:479,418:0.47:897
chr7	100608778	rs73163792	TC	CT	16116.77	.	AC=1;AF=0.500;AN=2;DB;DP=944;JOINED;set=Intersection	GT:AD:AF:DP	0/1:493,432:0.47:925
chr7	100608823	rs35790618	G	T	15917.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.162;ClippingRankSum=0.000;DB;DP=842;ExcessHet=3.0103;FS=2.458;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.09;ReadPosRankSum=0.120;SOR=0.496;set=HC	GT:AD:AF:DP	0/1:417,417:0.50:834
chr7	100608826	rs73163794	C	G	15864.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.685;ClippingRankSum=0.000;DB;DP=830;ExcessHet=3.0103;FS=2.434;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.30;ReadPosRankSum=-0.042;SOR=0.537;set=HC	GT:AD:AF:DP	0/1:407,415:0.50:822
chr7	100608868	rs67377634	A	G	11299.77	.	AC=1;AF=0.500;AN=2;DB;DP=591;set=Intersection	GT:AD:AF:DP	0/1:271,318:0.54:589
chr7	100608884	rs73163797	G	A	9943.77	.	AC=1;AF=0.500;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	0/1:217,252:0.54:469
chr7	100608912	rs73163798	A	G	6159.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.521;ClippingRankSum=0.000;DB;DP=329;ExcessHet=3.0103;FS=0.428;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.84;ReadPosRankSum=0.651;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:159,168:0.51:327
chr7	100608920	rs2904863	T	C	1560.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.766;ClippingRankSum=0.000;DB;DP=306;ExcessHet=3.0103;FS=1.031;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.12;ReadPosRankSum=-0.881;SOR=0.609;set=HC	GT:AD:AF:DP	0/1:216,89:0.29:305
chr7	100608929	rs80040741	G	T	5506.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.830;ClippingRankSum=0.000;DB;DP=277;ExcessHet=3.0103;FS=2.208;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.95;ReadPosRankSum=0.425;SOR=0.860;set=HC	GT:AD:AF:DP	0/1:137,139:0.50:276
chr7	100608953	rs78404383	TA	CT	3665.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.785;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=12.523;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.48;ReadPosRankSum=0.356;SOR=1.720;set=HC	GT:AD:AF:DP	0/1:93,86:0.48:179
chr7	100608958	rs76888130	T	C	2993.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.946;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=14.470;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.70;ReadPosRankSum=0.503;SOR=1.972;set=HC	GT:AD:AF:DP	0/1:80,72:0.47:152
chr7	100608961	rs74773493	C	T	2702.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.829;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=18.119;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.26;ReadPosRankSum=0.636;SOR=2.301;set=HC	GT:AD:AF:DP	0/1:79,69:0.47:148
chr7	100608964	rs77850164	G	T	2637.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.438;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=18.673;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.58;ReadPosRankSum=-0.692;SOR=2.363;set=HC	GT:AD:AF:DP	0/1:73,69:0.49:142
chr7	100609486	rs62483707	C	G	1353.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:63,63:0.50:126
chr7	100609966	rs10274451	T	C	35041.77	.	AC=2;AF=1.00;AN=2;DB;DP=826;set=Intersection	GT:AD:AF:DP	1/1:0,817:1.00:817
chr7	100609987	rs10274460	T	C	35920.77	.	AC=2;AF=1.00;AN=2;DB;DP=869;set=Intersection	GT:AD:AF:DP	1/1:0,861:1.00:861
chr7	100610026	rs10229209	A	C	26041.77	.	AC=2;AF=1.00;AN=2;DB;DP=940;set=Intersection	GT:AD:AF:DP	1/1:1,936:1.00:937
chr7	100610069	rs10258821	C	T	20127.77	.	AC=2;AF=1.00;AN=2;DB;DP=756;set=Intersection	GT:AD:AF:DP	1/1:0,752:1.00:752
chr7	100612766	rs71901679	CTGTCCAGGCACTT	C	635.73	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:80,18:0.18:98
chr7	100612786	rs73168325	G	T	657.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:88,26:0.23:114
chr7	100612839	rs76449674	A	G	3181.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.190;ClippingRankSum=0.000;DB;DP=273;ExcessHet=3.0103;FS=4.477;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=4.102;QD=11.87;ReadPosRankSum=-0.216;SOR=0.461;set=HC	GT:AD:AF:DP	0/1:180,88:0.33:268
chr7	100612842	rs79514982	T	C	3418.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.423;ClippingRankSum=0.000;DB;DP=287;ExcessHet=3.0103;FS=6.055;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=4.152;QD=12.12;ReadPosRankSum=0.463;SOR=0.436;set=HC	GT:AD:AF:DP	0/1:191,91:0.32:282
chr7	100612865	rs78097765	C	T	4606.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.140;ClippingRankSum=0.000;DB;DP=343;ExcessHet=3.0103;FS=0.411;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=3.716;QD=13.71;ReadPosRankSum=0.099;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:211,125:0.37:336
chr7	100612869	rs74554402	G	A	4764.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.806;ClippingRankSum=0.000;DB;DP=350;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=3.706;QD=13.89;ReadPosRankSum=0.394;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:215,128:0.37:343
chr7	100612875	rs75162633	C	T	4971.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.060;ClippingRankSum=0.000;DB;DP=365;ExcessHet=3.0103;FS=0.395;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=3.925;QD=13.89;ReadPosRankSum=0.596;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:224,134:0.37:358
chr7	100612898	rs73168327	T	C	5292.77	.	AC=1;AF=0.500;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	0/1:243,155:0.39:398
chr7	100612945	rs76619309	C	T	4600.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.451;ClippingRankSum=0.000;DB;DP=379;ExcessHet=3.0103;FS=0.393;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=3.634;QD=12.40;ReadPosRankSum=-0.741;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:241,130:0.35:371
chr7	100612952	rs79881008	G	A	4586.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.850;ClippingRankSum=0.000;DB;DP=364;ExcessHet=3.0103;FS=1.309;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=3.645;QD=12.81;ReadPosRankSum=-1.478;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:233,125:0.35:358
chr7	100612955	rs150485202	A	ACTG	4548.73	.	AC=1;AF=0.500;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	0/1:229,122:0.35:351
chr7	100612961	rs78487486	G	C	3445.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.955;ClippingRankSum=0.000;DB;DP=323;ExcessHet=3.0103;FS=1.455;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.87;ReadPosRankSum=0.264;SOR=0.789;set=HC	GT:AD:AF:DP	0/1:219,98:0.31:317
chr7	100612969	rs73168328	A	G	3277.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.406;ClippingRankSum=0.000;DB;DP=320;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.41;ReadPosRankSum=-0.471;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:217,98:0.31:315
chr7	100612996	rs76589634	A	G	2412.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:193,78:0.29:271
chr7	100613010	rs80354726	T	C	2222.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.481;ClippingRankSum=0.000;DB;DP=245;ExcessHet=3.0103;FS=4.319;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.22;ReadPosRankSum=-0.019;SOR=1.024;set=HC	GT:AD:AF:DP	0/1:175,66:0.27:241
chr7	100613011	rs79331440	G	A	2213.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.454;ClippingRankSum=0.000;DB;DP=238;ExcessHet=3.0103;FS=4.406;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.46;ReadPosRankSum=0.209;SOR=1.013;set=HC	GT:AD:AF:DP	0/1:171,63:0.27:234
chr7	100613018	rs78041688	A	C	2058.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.260;ClippingRankSum=0.000;DB;DP=223;ExcessHet=3.0103;FS=3.658;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.36;ReadPosRankSum=0.162;SOR=1.002;set=HC	GT:AD:AF:DP	0/1:162,58:0.26:220
chr7	100613027	rs73168330	T	C	1673.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.657;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=4.016;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.33;ReadPosRankSum=0.616;SOR=1.073;set=HC	GT:AD:AF:DP	0/1:150,51:0.25:201
chr7	100613059	rs66842488	GCCT	G	918.73	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:87,29:0.25:116
chr7	100613107	rs73168333	G	A	501.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.926;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=1.757;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.96;ReadPosRankSum=0.662;SOR=1.234;set=HC	GT:AD:AF:DP	0/1:47,16:0.25:63
chr7	100613112	rs75250895	G	C	558.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.887;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.63;ReadPosRankSum=-0.173;SOR=0.558;set=HC	GT:AD:AF:DP	0/1:41,17:0.29:58
chr7	100613127	rs73168334	T	C	424.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.276;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.88;ReadPosRankSum=0.780;SOR=0.357;set=HC	GT:AD:AF:DP	0/1:31,12:0.28:43
chr7	100615281	rs73400789	A	G	175.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:12,8:0.40:20
chr7	100615311	rs79784813	A	G	455.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.764;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.39;ReadPosRankSum=-0.043;SOR=0.458;set=HC	GT:AD:AF:DP	0/1:27,13:0.33:40
chr7	100615313	rs79548447	G	A	455.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.024;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=1.372;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.85;ReadPosRankSum=-0.334;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:28,14:0.33:42
chr7	100615321	rs75376427	G	A	451.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.260;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=3.112;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.51;ReadPosRankSum=-0.882;SOR=0.244;set=HC	GT:AD:AF:DP	0/1:29,14:0.33:43
chr7	100615353	rs73168339	C	T	747.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.360;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.39;ReadPosRankSum=-1.420;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:49,23:0.32:72
chr7	100615359	rs73168341	A	G	800.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.049;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.907;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.14;ReadPosRankSum=-1.524;SOR=0.562;set=HC	GT:AD:AF:DP	0/1:54,25:0.32:79
chr7	100615377	rs33957279	AC	A	894.73	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:71,27:0.28:98
chr7	100615387	rs75466554	C	T	1033.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:81,34:0.30:115
chr7	100615445	rs5021607	A	G	1668.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.512;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.09;ReadPosRankSum=0.806;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:92,46:0.33:138
chr7	100615449	rs5021606	C	G	1659.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.191;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.86;ReadPosRankSum=0.750;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:93,47:0.34:140
chr7	100615453	rs5021605	T	C	1617.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.428;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.64;ReadPosRankSum=1.565;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:94,45:0.32:139
chr7	100615454	rs5021604	G	C	1617.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.841;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.81;ReadPosRankSum=1.699;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:93,44:0.32:137
chr7	100615458	rs5021603	A	C	1572.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.977;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.74;ReadPosRankSum=1.576;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:90,44:0.33:134
chr7	100615460	rs5021602	A	G	1620.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.580;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=0.669;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.66;ReadPosRankSum=1.662;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:94,45:0.32:139
chr7	100615461	rs5021601	T	A	1614.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.334;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=0.669;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.62;ReadPosRankSum=1.671;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:94,45:0.32:139
chr7	100615477	rs5021600	G	A	1398.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:94,41:0.30:135
chr7	100615494	rs33959976	GTA	G	1227.73	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:78,35:0.31:113
chr7	100615500	rs77817912	A	G	1212.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.487;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=3.846;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.03;ReadPosRankSum=0.742;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:75,35:0.32:110
chr7	100615503	rs33984975	CAG	C	1203.73	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:75,34:0.31:109
chr7	100615521	rs79951460	T	C	999.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.076;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=4.309;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.99;ReadPosRankSum=-0.292;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:63,28:0.31:91
chr7	100615525	rs76946448	C	T	921.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.359;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=4.446;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.72;ReadPosRankSum=-0.721;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:59,27:0.31:86
chr7	100615531	rs79277318	T	G	846.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.072;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.00;ReadPosRankSum=-0.968;SOR=0.590;set=HC	GT:AD:AF:DP	0/1:53,24:0.31:77
chr7	100615533	rs75698243	C	A	816.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.023;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.925;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.75;ReadPosRankSum=-1.202;SOR=0.556;set=HC	GT:AD:AF:DP	0/1:52,24:0.32:76
chr7	100615570	rs73168342	T	G	127.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.004;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=1.862;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.12;ReadPosRankSum=-1.596;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:34,7:0.17:41
chr7	100615580	rs75806374	T	G	73.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.136;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.17;ReadPosRankSum=-0.830;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:30,4:0.12:34
chr7	100615583	rs75125684	T	C	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.190;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.65;ReadPosRankSum=-1.285;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:28,4:0.12:32
chr7	100615584	rs76813732	G	A	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.70;ReadPosRankSum=-1.478;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:27,4:0.13:31
chr7	100616181	rs76074645	C	A	86.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.675;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=3.615;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=0.000;QD=0.44;ReadPosRankSum=-3.658;SOR=0.785;set=HC	GT:AD:AF:DP	0/1:181,16:0.08:197
chr7	100616185	rs79851456	CA	TG	116.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.890;ClippingRankSum=0.000;DB;DP=212;ExcessHet=3.0103;FS=3.620;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=0.000;QD=0.58;ReadPosRankSum=-3.054;SOR=0.781;set=HC	GT:AD:AF:DP	0/1:184,16:0.08:200
chr7	100616195	rs77180957	GC	CT	194.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.693;ClippingRankSum=0.000;DB;DP=221;ExcessHet=3.0103;FS=1.989;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=0.000;QD=0.94;ReadPosRankSum=-2.346;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:189,19:0.09:208
chr7	100616199	rs78022349	T	C	225.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.420;ClippingRankSum=0.000;DB;DP=224;ExcessHet=3.0103;FS=0.890;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=0.000;QD=1.07;ReadPosRankSum=-2.229;SOR=0.532;set=HC	GT:AD:AF:DP	0/1:191,20:0.09:211
chr7	100616227	rs75588135	A	T	1036.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.217;ClippingRankSum=0.000;DB;DP=267;ExcessHet=3.0103;FS=4.097;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=0.000;QD=4.10;ReadPosRankSum=-0.527;SOR=0.989;set=HC	GT:AD:AF:DP	0/1:213,40:0.16:253
chr7	100616229	rs78091742	G	C	1030.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.907;ClippingRankSum=0.000;DB;DP=267;ExcessHet=3.0103;FS=5.074;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=4.04;ReadPosRankSum=-0.116;SOR=1.062;set=HC	GT:AD:AF:DP	0/1:214,41:0.16:255
chr7	100616245	rs79948354	C	A	1084.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.257;ClippingRankSum=0.000;DB;DP=266;ExcessHet=3.0103;FS=5.015;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=4.29;ReadPosRankSum=3.033;SOR=1.089;set=HC	GT:AD:AF:DP	0/1:211,42:0.17:253
chr7	100616277	rs117288840	A	G	494.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.589;ClippingRankSum=0.000;DB;DP=226;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.000;QD=2.30;ReadPosRankSum=0.252;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:189,26:0.12:215
chr7	100616279	.	C	G	488.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.465;ClippingRankSum=0.000;DP=224;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.000;QD=2.28;ReadPosRankSum=0.115;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:188,26:0.12:214
chr7	100616288	rs201235128	G	T	440.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.040;ClippingRankSum=0.000;DB;DP=208;ExcessHet=3.0103;FS=0.820;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=0.387;QD=2.23;ReadPosRankSum=-2.620;SOR=0.546;set=HC	GT:AD:AF:DP	0/1:174,24:0.12:198
chr7	100616310	rs199943216	G	C	98.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.809;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=2.188;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=-3.092;QD=0.58;ReadPosRankSum=-4.398;SOR=0.441;set=HC	GT:AD:AF:DP	0/1:155,16:0.09:171
chr7	100616313	rs200896810	T	A	107.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.584;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=2.331;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=-3.273;QD=0.65;ReadPosRankSum=-4.220;SOR=0.427;set=HC	GT:AD:AF:DP	0/1:152,14:0.08:166
chr7	100616320	rs200695576	G	A	56.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.338;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=4.029;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=-3.408;QD=0.34;ReadPosRankSum=-4.302;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:153,13:0.08:166
chr7	100624718	rs4363124	G	C	3416.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr7	100634476	rs6980143	C	G	8725.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:1,296:1.00:297
chr7	100634640	rs1791	T	G	21949.77	.	AC=2;AF=1.00;AN=2;DB;DP=816;set=Intersection	GT:AD:AF:DP	1/1:4,806:1.00:810
chr7	100634921	.	AG	GA	2944	.	AC=1;AF=0.500;AN=2;BRF=0.52;FR=0.5000;HP=1;HapScore=1;MGOF=36;MMLQ=24;MQ=57.6;NF=242;NR=46;PP=2944;QD=20;SC=AAGAATCTACAGCCTACCACA;SbPval=1.0;Source=Platypus;TC=814;TCF=557;TCR=257;TR=288;WE=100634941;WS=100634911;set=Platypus	GT:AD:AF:DP	0/1:526,288:0.35:814
chr7	100634933	.	G	C	2962	.	AC=1;AF=0.500;AN=2;BRF=0.52;FR=0.5000;HP=1;HapScore=1;MGOF=36;MMLQ=24;MQ=57.99;NF=357;NR=90;PP=2962;QD=20;SC=CCTACCACAGGAGCCCGGGCT;SbPval=0.97;Source=Platypus;TC=947;TCF=654;TCR=293;TR=447;WE=100634941;WS=100634911;set=Platypus	GT:AD:AF:DP	0/1:500,447:0.47:947
chr7	100634964	rs4370452	C	A	46746.77	.	AC=2;AF=1.00;AN=2;DB;DP=1727;set=Intersection	GT:AD:AF:DP	1/1:5,1698:1.00:1703
chr7	100635375	rs10808115	A	C	55158.77	.	AC=2;AF=1.00;AN=2;DB;DP=2107;set=Intersection	GT:AD:AF:DP	1/1:5,2075:1.00:2080
chr7	100635591	rs10953312	C	A	23948.77	.	AC=2;AF=1.00;AN=2;DB;DP=817;set=Intersection	GT:AD:AF:DP	1/1:0,812:1.00:812
chr7	100635661	rs10953313	T	C	73961.77	.	AC=2;AF=1.00;AN=2;DB;DP=1649;set=Intersection	GT:AD:AF:DP	1/1:0,1638:1.00:1638
chr7	100635679	rs10953314	C	G	83108.77	.	AC=2;AF=1.00;AN=2;DB;DP=2041;MQ=59.52;set=Intersection	GT:AD:AF:DP	1/1:0,2016:1.00:2016
chr7	100647819	rs11766024	C	T	8589.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr7	100647875	rs11766048	C	A	12204.77	.	AC=2;AF=1.00;AN=2;DB;DP=448;set=Intersection	GT:AD:AF:DP	1/1:0,445:1.00:445
chr7	100647920	rs11772963	A	C	14900.77	.	AC=2;AF=1.00;AN=2;DB;DP=552;set=Intersection	GT:AD:AF:DP	1/1:3,540:0.99:543
chr7	100648029	rs10953315	G	A	17886.77	.	AC=2;AF=1.00;AN=2;DB;DP=676;set=Intersection	GT:AD:AF:DP	1/1:2,664:1.00:666
chr7	100648117	rs11766125	C	G	15940.77	.	AC=2;AF=1.00;AN=2;DB;DP=573;set=Intersection	GT:AD:AF:DP	1/1:0,565:1.00:565
chr7	100651855	rs12532750	A	G	8853.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chr7	100652317	rs12540832	T	G	1212.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr7	100656003	rs3924886	G	C	2781.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr7	100658717	rs10229453	T	C	878.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr7	100675976	rs56103274	G	A	45280.77	.	AC=2;AF=1.00;AN=2;DB;DP=1997;set=Intersection	GT:AD:AF:DP	1/1:262,1726:0.87:1988
chr7	100679366	rs74209688	A	G	23199.77	.	AC=1;AF=0.500;AN=2;DB;DP=2159;set=Intersection	GT:AD:AF:DP	0/1:1076,1056:0.50:2132
chr7	100679902	rs55974941	A	G	55347.77	.	AC=2;AF=1.00;AN=2;DB;DP=2015;set=Intersection	GT:AD:AF:DP	1/1:7,1976:1.00:1983
chr7	100681762	rs10953316	A	G	56437.77	.	AC=2;AF=1.00;AN=2;DB;DP=2112;set=Intersection	GT:AD:AF:DP	1/1:1,2085:1.00:2086
chr7	100692341	rs4515470	C	G	1293.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr7	100692680	rs10246021	T	G	8018.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr7	100694854	rs67328257	G	A	3920.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr7	100695058	rs6966570	T	C	10754.77	.	AC=2;AF=1.00;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	1/1:0,384:1.00:384
chr7	100731505	rs4524722	C	G	1951.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr7	100731829	rs6948536	T	C	12959.77	.	AC=2;AF=1.00;AN=2;DB;DP=497;set=Intersection	GT:AD:AF:DP	1/1:0,486:1.00:486
chr7	100775087	rs143613360	A	AAAC	2745.73	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:1,62:0.98:63
chr7	100776931	rs2227684	G	A	5964.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr7	100780176	rs2227694	A	G	3750.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr7	100781445	rs7242	T	G	4991.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr7	100800131	rs4727481	T	C	1442.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr7	100800192	.	CTT	C	119.82	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.393;ClippingRankSum=-0.000;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=13.31;ReadPosRankSum=0.431;SOR=0.368;set=HC	GT:AD:AF:DP	1/1:2,7:0.78:9
chr7	100800632	rs146386827	G	GA	1861.73	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:42,59:0.58:101
chr7	100800635	rs2074686	G	A	3859.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:1,105:0.99:106
chr7	100802899	.	CT	C	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.814;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;FS=3.528;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.05;ReadPosRankSum=-0.059;SOR=0.260;set=HC	GT:AD:AF:DP	0/1:23,10:0.30:33
chr7	100803614	rs2074683	C	T	5027.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr7	100804140	rs1048303	C	T	5518.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr7	100804240	rs113505007	T	TACCTCC	2165.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr7	100815279	rs740103	G	A	4709.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr7	100816527	rs2009973	A	G	2982.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr7	100818101	rs733965	A	G	11638.77	.	AC=2;AF=1.00;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	1/1:0,423:1.00:423
chr7	100818193	rs2015923	G	C	3566.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr7	100841389	rs2158612	A	C	8008.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:1,299:1.00:300
chr7	100866079	rs199994531	G	A	4384.77	.	AC=1;AF=0.500;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	0/1:225,214:0.49:439
chr7	100965096	rs11369267	A	AG	9062.73	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr7	101063403	rs11767330	G	T	725.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:72,40:0.36:112
chr7	101063487	rs11767356	G	A	74.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:15,5:0.25:20
chr7	101090831	rs17135418	G	A	1132.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:47,50:0.52:97
chr7	101091166	rs62463425	T	C	559.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:29,24:0.45:53
chr7	101176505	rs1476655	G	A	1235.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:51,52:0.50:103
chr7	101183108	rs6465817	T	C	1896.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:54,88:0.62:142
chr7	101188852	rs9886175	T	C	650.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:41,35:0.46:76
chr7	101192542	rs57977430	G	A	5569.77	.	AC=1;AF=0.500;AN=2;DB;DP=497;set=Intersection	GT:AD:AF:DP	0/1:225,268:0.54:493
chr7	101194424	rs17135626	C	T	1944.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:62,85:0.58:147
chr7	101194461	rs73715304	C	A	1013.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:41,44:0.52:85
chr7	101196488	rs12674244	T	C	2500.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr7	101196688	rs13235234	C	T	5379.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;MQ=60.05;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr7	101196756	rs3800980	A	G	2021.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr7	101199257	rs4729728	G	A	1469.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:79,71:0.47:150
chr7	101200628	rs11768650	C	A	5317.77	.	AC=1;AF=0.500;AN=2;DB;DP=598;set=Intersection	GT:AD:AF:DP	0/1:327,268:0.45:595
chr7	101200669	rs36008849	A	AG	16965.73	.	AC=2;AF=1.00;AN=2;DB;DP=511;set=Intersection	GT:AD:AF:DP	1/1:0,494:1.00:494
chr7	101200835	rs7809926	A	G	1692.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:54,76:0.58:130
chr7	101256833	rs2240389	T	C	4010.77	.	AC=1;AF=0.500;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	0/1:162,189:0.54:351
chr7	101257075	rs2240390	T	C	1312.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:61,67:0.52:128
chr7	101265350	rs4263675	T	C	3296.77	.	AC=1;AF=0.500;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	0/1:158,156:0.50:314
chr7	101266379	rs7794055	T	C	4369.77	.	AC=1;AF=0.500;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	0/1:194,208:0.52:402
chr7	101267435	rs876825	T	C	3062.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:127,150:0.54:277
chr7	101272465	rs848644	T	C	284.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:22,16:0.42:38
chr7	101459161	rs28650922	T	C	2921.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr7	101671585	rs448877	A	G	2811.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr7	101713590	rs377612	T	C	1303.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr7	101740606	rs1637257	T	G	1963.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.177;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=1.926;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.12;ReadPosRankSum=-0.538;SOR=0.493;set=HC	GT:AD:AF:DP	0/1:43,50:0.54:93
chr7	101740610	rs1734879	C	A	2020.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.889;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.866;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.83;ReadPosRankSum=-0.636;SOR=0.554;set=HC	GT:AD:AF:DP	0/1:44,53:0.55:97
chr7	101740827	rs10638510	T	TTC	2554.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.328;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.000;QD=17.74;ReadPosRankSum=0.537;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:71,73:0.51:144
chr7	101747575	rs201480	A	G	1872.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:62,68:0.52:130
chr7	101747593	.	G	GT	1580.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.422;ClippingRankSum=0.000;DP=209;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.345;QD=7.90;ReadPosRankSum=0.070;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:93,107:0.54:200
chr7	101754865	rs201493	T	C	864.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:33,39:0.54:72
chr7	101755060	rs9655774	A	G	2551.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:114,126:0.53:240
chr7	101758584	rs201501	G	A	3827.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.896;ClippingRankSum=0.000;DB;DP=435;ExcessHet=3.0103;FS=0.517;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.94;ReadPosRankSum=-0.478;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:229,199:0.46:428
chr7	101837149	rs11540899	G	A	3207.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:116,152:0.57:268
chr7	101843536	rs34285499	A	AT	1363.73	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:82,83:0.50:165
chr7	101844851	rs60987662	A	G	10035.77	.	AC=1;AF=0.500;AN=2;DB;DP=1137;set=Intersection	GT:AD:AF:DP	0/1:631,495:0.44:1126
chr7	101870599	rs430841	A	G	4866.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr7	101882503	rs62484935	T	C	1386.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:67,62:0.48:129
chr7	101892121	rs410825	G	A	819.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:44,37:0.46:81
chr7	101892328	rs368214	C	T	2324.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:87,111:0.56:198
chr7	101916647	rs813000	A	G	5952.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr7	101917521	rs803064	G	A	8172.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:2,309:0.99:311
chr7	101917647	rs712839	A	G	8275.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr7	101917772	rs712840	A	G	2094.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr7	101923315	rs57030737	T	TC	16935.73	.	AC=2;AF=1.00;AN=2;DB;DP=502;set=Intersection	GT:AD:AF:DP	1/1:0,489:1.00:489
chr7	101925065	rs803069	G	T	4427.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr7	101925338	rs2257738	A	G	4649.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr7	101926087	rs73712454	G	T	1140.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:82,71:0.46:153
chr7	101926228	rs803070	T	C	2019.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr7	101928495	rs803074	G	C	8332.77	.	AC=1;AF=0.500;AN=2;DB;DP=734;set=Intersection	GT:AD:AF:DP	0/1:338,389:0.54:727
chr7	101928585	rs803075	G	A	8875.77	.	AC=1;AF=0.500;AN=2;DB;DP=818;set=Intersection	GT:AD:AF:DP	0/1:390,417:0.52:807
chr7	101953534	rs809120	T	G	915.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr7	101957518	rs2023407	C	A	7667.77	.	AC=1;AF=0.500;AN=2;DB;DP=771;set=Intersection	GT:AD:AF:DP	0/1:392,362:0.48:754
chr7	101961839	rs201516806	C	T	2143.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:144,116:0.45:260
chr7	102036396	rs28366045	AC	A	2827.73	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:81,84:0.51:165
chr7	102036769	rs56992893	CGGAGACTGCGTATGCG	C	799.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr7	102038153	.	CTGTGTG	C,CTG	13219.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=567;set=Intersection	GT:AF:DP	1/2:0.18,0.82:330
chr7	102045170	rs62482945	A	T	760.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:45,37:0.45:82
chr7	102046070	rs6971258	T	A	1278.73	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr7	102046359	rs6955864	G	C	4708.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr7	102063363	rs143532608	GGAAACATCC	G	5153.73	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr7	102063527	rs7384395	G	C	11251.77	.	AC=2;AF=1.00;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	1/1:0,425:1.00:425
chr7	102065322	rs1983476	A	G	1371.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr7	102065651	rs1047998	C	T	563.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:25,26:0.51:51
chr7	102086891	rs12672132	C	T	2277.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr7	102105984	rs10953368	T	G	1351.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr7	102106857	rs140459331	CTTTA	C	1076.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr7	102107697	rs11761361	G	C	1386.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr7	102108900	rs62483806	G	A	3280.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:151,145:0.49:296
chr7	102111936	rs60871950	G	A	3000.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:141,145:0.51:286
chr7	102112980	rs3800987	G	A	10820.77	.	AC=2;AF=1.00;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	1/1:0,393:1.00:393
chr7	102113093	rs3800988	T	C	22397.77	.	AC=2;AF=1.00;AN=2;DB;DP=837;MQ=60.01;set=Intersection	GT:AD:AF:DP	1/1:2,832:1.00:834
chr7	102113563	rs61229695	TG	T	4406.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.272;ClippingRankSum=0.000;DB;DP=223;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=27.89;ReadPosRankSum=-1.229;SOR=0.374;set=HC	GT:AD:AF:DP	1/1:2,156:0.99:158
chr7	102114989	rs145000593	T	TC	149.87	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=35.38;QD=29.97;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr7	102120821	rs11767570	T	G	2004.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:2,70:0.97:72
chr7	102136550	rs77782294	G	A	9522.77	.	AC=2;AF=1.00;AN=2;DB;DP=345;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.89;QD=27.68;SOR=1.202;set=HC	GT:AD:AF:DP	1/1:0,344:1.00:344
chr7	102235692	.	G	GCT	565.73	.	AC=2;AF=1.00;AN=2;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.62;QD=37.72;SOR=5.549;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr7	102235910	.	G	C	178.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.139;ClippingRankSum=-0.000;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=40.56;MQRankSum=0.349;QD=16.25;ReadPosRankSum=-0.875;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:4,7:0.64:11
chr7	102246500	rs144574884	A	G	154.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.178;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=2.077;MLEAC=1;MLEAF=0.500;MQ=49.75;MQRankSum=0.891;QD=9.10;ReadPosRankSum=-1.737;SOR=1.565;set=HC	GT:AD:AF:DP	0/1:9,8:0.47:17
chr7	102279621	rs201558735	C	T	2322.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.378;ClippingRankSum=0.000;DB;DP=1062;ExcessHet=3.0103;FS=0.686;MLEAC=1;MLEAF=0.500;MQ=47.63;MQRankSum=-13.748;QD=2.19;ReadPosRankSum=-0.270;SOR=0.774;set=HC	GT:AD:AF:DP	0/1:852,210:0.20:1062
chr7	102279759	.	G	A	42.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.744;ClippingRankSum=-0.000;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=39.27;MQRankSum=0.349;QD=3.89;ReadPosRankSum=0.660;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:8,3:0.27:11
chr7	102318861	rs374405684	G	A	1322.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.771;ClippingRankSum=0.000;DB;DP=512;ExcessHet=3.0103;FS=1.425;MLEAC=1;MLEAF=0.500;MQ=57.56;MQRankSum=-1.641;QD=2.70;ReadPosRankSum=1.460;SOR=0.564;set=HC	GT:AD:AF:DP	0/1:388,102:0.21:490
chr7	102319079	rs368279784	G	A	666.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.492;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=39.98;MQRankSum=0.948;QD=4.17;ReadPosRankSum=2.090;SOR=0.084;set=HC	GT:AD:AF:DP	0/1:124,36:0.23:160
chr7	102343967	rs4729850	A	G	5230.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr7	102389833	rs28695887	G	C	1584.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr7	102398410	rs199537059	C	CT	773.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.823;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.92;MQRankSum=-7.894;QD=5.34;ReadPosRankSum=1.116;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:86,59:0.41:145
chr7	102412901	rs2539288	T	C	1685.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.317;ClippingRankSum=0.000;DB;DP=641;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.06;MQRankSum=-23.221;QD=2.65;ReadPosRankSum=0.485;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:489,147:0.23:636
chr7	102427889	rs116082009	C	T	3781.77	.	AC=1;AF=0.500;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	0/1:192,190:0.50:382
chr7	102462636	rs10279449	T	C	5740.77	.	AC=1;AF=0.500;AN=2;DB;DP=582;set=Intersection	GT:AD:AF:DP	0/1:288,285:0.50:573
chr7	102473163	rs4377880	A	G	1107.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:45,40:0.47:85
chr7	102572433	rs55781834	A	C	1844.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:83,79:0.49:162
chr7	102574999	rs3832497	TGAA	T	26162.73	.	AC=2;AF=1.00;AN=2;DB;DP=641;set=Intersection	GT:AD:AF:DP	1/1:0,589:1.00:589
chr7	102614137	rs6465886	C	A	2367.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:122,112:0.48:234
chr7	102616469	rs2228687	G	A	2580.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:165,126:0.43:291
chr7	102668001	rs7805950	A	C	3040.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr7	102716415	rs62482903	T	C	1328.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:73,65:0.47:138
chr7	102722505	rs4729868	G	A	10975.77	.	AC=2;AF=1.00;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	1/1:0,403:1.00:403
chr7	102722516	rs4729869	T	C	9841.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:0,351:1.00:351
chr7	102724372	rs4729871	A	T	9543.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:0,339:1.00:339
chr7	102739043	rs4729879	C	T	2035.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr7	102743893	rs3181009	C	T	151.80	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr7	102755330	rs4729882	A	G	2553.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr7	102760722	rs1974715	A	G	1337.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr7	102768821	.	T	A	800.77	.	AC=1;AF=0.500;AN=2;DP=73;set=Intersection	GT:AD:AF:DP	0/1:36,34:0.49:70
chr7	102825871	rs4317507	T	C	5762.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr7	102874366	rs3987883	C	T	3025.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr7	102883497	.	TA	T	203.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.713;ClippingRankSum=0.000;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=-2.973;QD=1.90;ReadPosRankSum=0.787;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:71,36:0.34:107
chr7	102898221	.	C	CATA	751.73	.	AC=1;AF=0.500;AN=2;DP=86;set=Intersection	GT:AD:AF:DP	0/1:26,21:0.45:47
chr7	102948040	rs11489600	T	C	9069.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:0,329:1.00:329
chr7	102961209	rs72437079	CAT	C	121.82	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.210;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=20.30;ReadPosRankSum=-0.674;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:1,5:0.83:6
chr7	103007949	rs4520097	A	C	5445.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.64;QD=26.18;SOR=0.997;set=HC	GT:AD:AF:DP	1/1:0,208:1.00:208
chr7	103018016	rs10273883	A	G	5998.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr7	103019613	rs12705120	A	G	4458.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr7	103019930	.	C	CA	65.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.609;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.74;ReadPosRankSum=-0.568;SOR=0.515;set=HC	GT:AD:AF:DP	0/1:15,9:0.38:24
chr7	103033573	rs13240456	T	C	1734.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr7	103113192	rs112874175	C	T	707.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:21,31:0.60:52
chr7	103117161	rs150194015	A	G	1428.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:76,68:0.47:144
chr7	103124207	rs1062831	T	C	3309.77	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:193,170:0.47:363
chr7	103130403	rs736707	A	G	2395.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:105,108:0.51:213
chr7	103138517	rs2711885	C	G	12808.77	.	AC=2;AF=1.00;AN=2;DB;DP=455;set=Intersection	GT:AD:AF:DP	1/1:0,452:1.00:452
chr7	103138727	rs79694224	TAAAA	T	3577.73	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:99,96:0.49:195
chr7	103151436	rs3808039	T	C	2636.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:138,123:0.47:261
chr7	103155705	rs2229864	A	G	2477.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:113,123:0.52:236
chr7	103155944	rs2528862	C	G	1002.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:30,45:0.60:75
chr7	103155951	rs78832383	A	AAAG	1236.73	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:27,33:0.55:60
chr7	103155977	rs2528863	A	C	508.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:15,22:0.59:37
chr7	103159633	rs3779521	A	G	856.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:27,33:0.55:60
chr7	103162370	rs10282605	C	T	2497.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr7	103175965	rs362706	C	T	4042.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr7	103181016	rs2075044	C	T	554.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:16,24:0.60:40
chr7	103191428	rs362721	C	T	771.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:29,30:0.51:59
chr7	103198251	rs6964157	C	A	190.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:13,9:0.41:22
chr7	103202406	.	CAA	C	603.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.154;ClippingRankSum=0.000;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=1.831;QD=6.42;ReadPosRankSum=0.802;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:54,40:0.43:94
chr7	103205617	rs362725	A	G	535.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:27,26:0.49:53
chr7	103206001	rs35268159	G	GA	1218.73	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:63,81:0.56:144
chr7	103207234	rs362726	T	C	4152.77	.	AC=1;AF=0.500;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	0/1:145,194:0.57:339
chr7	103270629	.	G	GA	157.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.302;ClippingRankSum=0.000;DP=121;ExcessHet=3.0103;FS=2.610;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.707;QD=1.63;ReadPosRankSum=-0.722;SOR=0.324;set=HC	GT:AD:AF:DP	0/1:74,23:0.24:97
chr7	103275803	rs362646	T	C	468.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:23,22:0.49:45
chr7	103389954	rs607755	A	G	743.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:26,36:0.58:62
chr7	103417134	rs262338	G	T	3624.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.058;ClippingRankSum=0.000;DB;DP=225;ExcessHet=3.0103;FS=3.268;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.48;ReadPosRankSum=0.730;SOR=0.930;set=HC	GT:AD:AF:DP	0/1:122,98:0.45:220
chr7	103417139	rs13243284	A	C	3643.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.665;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=1.201;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.59;ReadPosRankSum=-1.624;SOR=0.815;set=HC	GT:AD:AF:DP	0/1:102,94:0.48:196
chr7	103417557	rs11496125	C	T	837.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:60,43:0.42:103
chr7	103557697	rs711443	A	G	3054.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr7	103807202	rs2307405	G	C	636.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:38,30:0.44:68
chr7	103848094	rs2075217	T	A	3301.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.23;SOR=7.195;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr7	103848102	rs971813	C	G	3644.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.38;SOR=4.905;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr7	103848133	rs10953406	C	G	4283.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr7	103848413	rs2075218	G	C	5837.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr7	103969194	.	CAGG	C	282.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.046;ClippingRankSum=0.000;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.41;ReadPosRankSum=-0.221;SOR=0.451;set=HC	GT:AD:AF:DP	0/1:70,13:0.16:83
chr7	104110392	rs4727601	C	T	8994.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	1/1:0,333:1.00:333
chr7	104263425	rs1073012	T	C	1228.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.71;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr7	104377453	rs4236573	A	C	486.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:32,25:0.44:57
chr7	104717319	rs10598888	TTGTGTGTGTG	T,TTGTGTG	2911.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=34.66;SOR=1.508;set=HC	GT:AD:AF:DP	1/2:0,55,29:0.65,0.35:84
chr7	104741842	rs10953468	A	T	634.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:10,27:0.73:37
chr7	104745818	rs2299298	G	A	717.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:27,31:0.53:58
chr7	104748407	rs34102092	GT	G	821.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.049;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=4.865;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.91;ReadPosRankSum=-0.356;SOR=0.328;set=HC	GT:AD:AF:DP	0/1:69,70:0.50:139
chr7	104748920	.	T	C	2130.77	.	AC=1;AF=0.500;AN=2;DP=214;set=Intersection	GT:AD:AF:DP	0/1:100,106:0.51:206
chr7	104767295	rs3815256	A	G	1973.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr7	104785779	rs7780887	T	G	1983.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.76;SOR=0.772;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr7	104800939	rs4730071	C	T	3758.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr7	104808386	rs143276009	G	GA	415.73	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:23,21:0.48:44
chr7	104844328	rs2240463	C	T	2543.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:108,110:0.50:218
chr7	104844416	rs200398298	CAA	C,CA	2801.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=188;set=Intersection	GT:AF:DP	1/2:0.29,0.66:172
chr7	104844519	rs10281422	G	A	4583.77	.	AC=1;AF=0.500;AN=2;DB;DP=487;set=Intersection	GT:AD:AF:DP	0/1:249,228:0.48:477
chr7	104845094	rs41562	T	C	2008.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:131,104:0.44:235
chr7	104845124	rs2237611	A	C	4802.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr7	104845154	.	AAGAACAAGCTTGACAAACAT	A	1771.73	.	AC=1;AF=0.500;AN=2;DP=89;set=Intersection	GT:AD:AF:DP	0/1:41,46:0.53:87
chr7	104845962	.	TCTCACACACACA	T	84.73	.	AC=1;AF=0.500;ALERT;AN=2;DP=151;set=Intersection	GT:AD:AF:DP	0/1:100,17:0.15:117
chr7	104845964	.	TCACACACACACACA	T	217.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.165;ClippingRankSum=0.000;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.81;ReadPosRankSum=0.100;SOR=0.508;set=HC	GT:AD:AF:DP	0/1:97,23:0.19:120
chr7	104846173	rs55712418	A	G	5160.77	.	AC=1;AF=0.500;AN=2;DB;DP=505;set=Intersection	GT:AD:AF:DP	0/1:252,243:0.49:495
chr7	104846375	rs139433699	A	AAC	4795.73	.	AC=1;AF=0.500;AN=2;DB;DP=650;set=Intersection	GT:AD:AF:DP	0/1:383,193:0.34:576
chr7	105108739	rs140886307	C	T	4592.77	.	AC=1;AF=0.500;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	0/1:211,219:0.51:430
chr7	105112432	rs200491198	TATAA	T	837.73	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:35,24:0.41:59
chr7	105112489	rs818477	C	A	1124.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:77,58:0.43:135
chr7	105122891	rs57080279	TA	T	239.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.157;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=4.461;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.326;QD=1.98;ReadPosRankSum=-0.604;SOR=1.262;set=HC	GT:AD:AF:DP	0/1:80,41:0.34:121
chr7	105146593	rs11421080	A	AT	3485.73	.	AC=1;AF=0.500;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	0/1:142,163:0.53:305
chr7	105205917	rs864687	A	C	1917.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:110,98:0.47:208
chr7	105205955	rs861761	T	C	1769.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:71,79:0.53:150
chr7	105250824	rs10216257	G	C	1149.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:51,53:0.51:104
chr7	105250904	rs10215543	A	G	1831.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.251;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=1.352;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.10;ReadPosRankSum=-0.720;SOR=0.827;set=HC	GT:AD:AF:DP	0/1:77,88:0.53:165
chr7	105250904	.	AG	GA	1267	.	AC=1;AF=0.500;AN=2;BRF=0.39;FR=0.5000;HP=4;HapScore=2;MGOF=11;MMLQ=24;MQ=59.82;NF=50;NR=41;PP=1267;QD=14.5106359875;SC=GTCTGACCCCAGTGTCCAAAC;SbPval=0.33;Source=Platypus;TC=200;TCF=119;TCR=81;TR=91;WE=105250913;WS=105250894;set=Platypus	GT:AD:AF:DP	0/1:109,91:0.46:200
chr7	105250905	rs940370	G	A	5890.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.49;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,166:1.00:166
chr7	105254801	rs150182467	AGAG	A	103.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.235;ClippingRankSum=0.000;DB;DP=190;ExcessHet=3.0103;FS=2.384;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.64;ReadPosRankSum=0.519;SOR=0.875;set=HC	GT:AD:AF:DP	0/1:149,14:0.09:163
chr7	105733037	rs4434555	T	C	419.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr7	105733118	.	CA	C	128.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.95;ReadPosRankSum=0.099;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:13,13:0.50:26
chr7	105733619	rs176486	G	A	5833.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr7	105738368	rs12705333	T	C	3228.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr7	105903904	rs2302559	T	C	4081.77	.	AC=1;AF=0.500;AN=2;DB;DP=515;set=Intersection	GT:AD:AF:DP	0/1:311,200:0.39:511
chr7	105904150	rs4730153	A	G	2499.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:103,111:0.52:214
chr7	105909828	rs35479106	C	CT	109.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.141;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.539;QD=1.35;ReadPosRankSum=0.619;SOR=0.822;set=HC	GT:AD:AF:DP	0/1:62,19:0.23:81
chr7	106508978	rs849389	A	G	21017.77	.	AC=2;AF=1.00;AN=2;DB;DP=485;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.97;SOR=0.753;set=HC	GT:AD:AF:DP	1/1:0,478:1.00:478
chr7	106508987	rs849390	T	C	20814.77	.	AC=2;AF=1.00;AN=2;DB;DP=479;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.10;SOR=0.719;set=HC	GT:AD:AF:DP	1/1:0,472:1.00:472
chr7	106510076	rs1526083	A	G	1001.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:46,46:0.50:92
chr7	106513011	rs1129293	C	T	5610.77	.	AC=1;AF=0.500;AN=2;DB;DP=713;set=Intersection	GT:AD:AF:DP	0/1:411,297:0.42:708
chr7	106519943	rs849370	T	C	11583.77	.	AC=2;AF=1.00;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	1/1:0,436:1.00:436
chr7	106685448	rs75385144	G	T	2481.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:106,118:0.53:224
chr7	106768839	rs34736852	G	GAC	3688.73	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:143,98:0.41:241
chr7	106781445	rs2302453	G	A	1418.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:74,71:0.49:145
chr7	106786952	rs3729876	T	C	1768.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:82,77:0.48:159
chr7	106787065	rs3729877	T	G	299.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:14,13:0.48:27
chr7	106793847	rs55816289	G	T	66.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:8,4:0.33:12
chr7	106799997	rs257376	G	A	7412.77	.	AC=1;AF=0.500;AN=2;DB;DP=818;set=Intersection	GT:AD:AF:DP	0/1:433,369:0.46:802
chr7	106826381	rs7794598	C	T	3905.77	.	AC=1;AF=0.500;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	0/1:261,197:0.43:458
chr7	106826439	rs7794965	G	A	1809.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:119,84:0.41:203
chr7	106836195	.	CT	C	132.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.098;ClippingRankSum=0.000;DP=64;ExcessHet=3.0103;FS=1.255;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.14;ReadPosRankSum=-0.697;SOR=0.922;set=HC	GT:AD:AF:DP	0/1:43,19:0.31:62
chr7	106851754	rs1018946	T	C	1137.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:102,54:0.35:156
chr7	106897037	rs17428126	C	T	221.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:16,12:0.43:28
chr7	106897237	rs17349904	A	C	928.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:40,42:0.51:82
chr7	106898870	rs373558918	TTC	T	186.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.818;ClippingRankSum=0.000;DB;DP=339;ExcessHet=3.0103;FS=2.080;MLEAC=1;MLEAF=0.500;MQ=60.60;MQRankSum=-0.967;QD=1.06;ReadPosRankSum=-0.877;SOR=0.431;set=HC	GT:AD:AF:DP	0/1:148,28:0.16:176
chr7	106898895	rs142552893	T	TCTCA	610.73	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:123,43:0.26:166
chr7	106898908	rs376122764	TAC	T	42.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.142;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=1.633;MLEAC=1;MLEAF=0.500;MQ=60.48;MQRankSum=0.941;QD=0.36;ReadPosRankSum=-1.416;SOR=0.991;set=HC	GT:AD:AF:DP	0/1:105,13:0.11:118
chr7	106965039	rs6466164	C	T	195.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:14,10:0.42:24
chr7	106965091	rs7807648	C	T	134.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,6:0.55:11
chr7	107002573	rs12536603	T	C	1996.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:145,105:0.42:250
chr7	107002806	rs2269970	A	G	3152.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:113,149:0.57:262
chr7	107053157	rs372240169	CA	C	113.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.760;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.67;ReadPosRankSum=-1.305;SOR=0.352;set=HC	GT:AD:AF:DP	0/1:19,12:0.39:31
chr7	107114400	rs11453718	A	AT	1294.73	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:1,57:0.98:58
chr7	107167661	rs201626701	T	TA	335.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.133;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=1.754;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=1.649;QD=2.17;ReadPosRankSum=-0.823;SOR=0.908;set=HC	GT:AD:AF:DP	0/1:112,43:0.28:155
chr7	107194911	rs2520270	C	A	795.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:23,31:0.57:54
chr7	107198405	rs2520272	A	T	2454.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:157,118:0.43:275
chr7	107207695	rs4730250	A	G	1579.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:77,75:0.49:152
chr7	107208118	rs1468335	T	C	1329.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:70,61:0.47:131
chr7	107208250	rs1468336	T	C	15753.77	.	AC=2;AF=1.00;AN=2;DB;DP=599;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.48;SOR=0.703;set=HC	GT:AD:AF:DP	1/1:0,595:1.00:595
chr7	107216738	rs10276604	C	T	1180.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr7	107217068	rs3839819	TG	T	6271.73	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr7	107218033	rs711442	T	C	567.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:23,22:0.49:45
chr7	107255548	rs3801944	T	C	6689.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr7	107303622	rs2248464	A	T	5914.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.57;SOR=2.176;set=HC	GT:AD:AF:DP	1/1:0,127:1.00:127
chr7	107303628	rs2248465	C	T	6231.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.39;SOR=2.131;set=HC	GT:AD:AF:DP	1/1:0,147:1.00:147
chr7	107340372	rs35161285	CAAA	C	731.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.805;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.35;ReadPosRankSum=0.503;SOR=0.507;set=HC	GT:AD:AF:DP	0/1:21,30:0.59:51
chr7	107344921	.	CT	C	137.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.643;ClippingRankSum=0.000;DP=329;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=0.000;QD=0.51;ReadPosRankSum=-0.935;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:220,52:0.19:272
chr7	107384849	rs756872	C	T	208.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:11,10:0.48:21
chr7	107392891	rs10594774	CTG	C	536.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.818;ClippingRankSum=0.000;DB;DP=211;ExcessHet=3.0103;FS=1.774;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=3.111;QD=2.74;ReadPosRankSum=-0.340;SOR=0.472;set=HC	GT:AD:AF:DP	0/1:161,35:0.18:196
chr7	107414419	rs41669	A	G	12812.77	.	AC=2;AF=1.00;AN=2;DB;DP=495;set=Intersection	GT:AD:AF:DP	1/1:0,492:1.00:492
chr7	107418805	rs10681903	C	CTTTT	524.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.470;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=6.990;MLEAC=2;MLEAF=1.000;MQ=60.70;MQRankSum=0.667;QD=34.98;ReadPosRankSum=0.116;SOR=2.946;set=HC	GT:AD:AF:DP	1/1:1,14:0.93:15
chr7	107420354	rs10247487	C	T	3922.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:2,135:0.99:137
chr7	107423254	rs3735605	C	T	9047.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,325:1.00:325
chr7	107531832	rs11373214	G	GC	4739.73	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr7	107542662	rs10250718	T	C	131.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr7	107545586	rs17412104	G	A	390.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:15,17:0.53:32
chr7	107545799	rs10263341	T	C	3350.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:147,159:0.52:306
chr7	107559722	rs8721	A	T	397.73	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:40,21:0.34:61
chr7	107564366	rs7561	T	G	3402.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:157,161:0.51:318
chr7	107564539	rs3213673	G	A	2739.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.427;ClippingRankSum=0.000;DB;DP=253;ExcessHet=3.0103;FS=2.977;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.86;ReadPosRankSum=4.002;SOR=0.731;set=HC	GT:AD:AF:DP	0/1:138,93:0.40:231
chr7	107564542	rs3213674	G	T	2972.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.451;ClippingRankSum=0.000;DB;DP=248;ExcessHet=3.0103;FS=1.029;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.65;ReadPosRankSum=3.556;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:133,102:0.43:235
chr7	107569517	rs1131398	A	G	2432.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:92,104:0.53:196
chr7	107577448	rs34337564	CT	C	2855.73	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:62,73:0.54:135
chr7	107577456	rs56285692	T	C	1844.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:79,75:0.49:154
chr7	107580839	rs2158836	A	G	1001.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:30,41:0.58:71
chr7	107593989	rs20556	T	C	2290.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:141,111:0.44:252
chr7	107603431	rs2230156	A	C	2311.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:100,113:0.53:213
chr7	107613379	rs2701034	G	A	4031.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr7	107626770	rs25659	G	A	6848.77	.	AC=1;AF=0.500;AN=2;DB;DP=775;set=Intersection	GT:AD:AF:DP	0/1:419,343:0.45:762
chr7	107710123	rs11974886	C	T	3606.77	.	AC=1;AF=0.500;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	0/1:167,175:0.51:342
chr7	107720162	rs9690688	C	A	2694.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:133,120:0.47:253
chr7	107738801	.	A	ACATAGGGGTTGATGGACGCCCCCTCCCCGCCCTCCCACTATGGACTTACGCTGGCAGCC	1180.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.233;ClippingRankSum=0.000;DP=84;ExcessHet=3.0103;FS=20.121;MLEAC=1;MLEAF=0.500;MQ=59.52;MQRankSum=-3.637;QD=15.96;ReadPosRankSum=0.618;SOR=2.145;set=HC	GT:AD:AF:DP	0/1:53,21:0.28:74
chr7	107738836	rs6974722	T	C	980.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.910;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=2.328;MLEAC=1;MLEAF=0.500;MQ=59.69;MQRankSum=-2.961;QD=7.54;ReadPosRankSum=0.350;SOR=0.930;set=HC	GT:AD:AF:DP	0/1:82,48:0.37:130
chr7	107738882	rs1735499	G	A	1400.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:80,73:0.48:153
chr7	107738948	rs451252	G	A	1901.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:76,88:0.54:164
chr7	107743409	rs401487	A	G	894.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:37,36:0.49:73
chr7	107743664	rs402113	A	G	1926.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:75,90:0.55:165
chr7	107746214	rs430628	TG	GC	1552.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;JOINED;set=Intersection	GT:AD:AF:DP	0/1:47,41:0.47:88
chr7	107746246	rs370495	T	C	3220.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.378;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=1.336;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.95;ReadPosRankSum=0.257;SOR=0.852;set=HC	GT:AD:AF:DP	0/1:89,81:0.48:170
chr7	107746253	rs420753	A	G	3364.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.195;ClippingRankSum=0.000;DB;DP=200;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.17;ReadPosRankSum=-0.146;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:101,95:0.48:196
chr7	107746865	rs111986177	GA	G	203.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.541;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=1.059;QD=5.99;ReadPosRankSum=0.000;SOR=0.955;set=HC	GT:AD:AF:DP	0/1:17,17:0.50:34
chr7	107747081	rs5886439	C	CT	351.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.909;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=2.759;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=0.914;QD=8.37;ReadPosRankSum=0.586;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:18,24:0.57:42
chr7	107747928	rs446800	A	C	3708.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.837;ClippingRankSum=0.000;DB;DP=235;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.99;ReadPosRankSum=-2.065;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:129,103:0.44:232
chr7	107747937	rs401066	G	A	3748.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.255;ClippingRankSum=0.000;DB;DP=222;ExcessHet=3.0103;FS=0.492;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.12;ReadPosRankSum=-2.872;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:120,99:0.45:219
chr7	107748337	rs402264	G	A	1397.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:76,65:0.46:141
chr7	107752470	rs369505	A	T	1813.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.882;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=11.484;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.95;ReadPosRankSum=-1.162;SOR=0.178;set=HC	GT:AD:AF:DP	0/1:56,51:0.48:107
chr7	107752477	rs369508	A	G	1634.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.100;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=9.644;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.39;ReadPosRankSum=-0.959;SOR=0.161;set=HC	GT:AD:AF:DP	0/1:51,43:0.46:94
chr7	107791018	rs443552	G	C	450.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.316;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.02;ReadPosRankSum=0.263;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:26,24:0.48:50
chr7	107799559	rs73412325	C	T	102.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:5,5:0.50:10
chr7	107799683	rs62469173	A	G	660.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:41,35:0.46:76
chr7	107800092	rs17155081	A	G	313.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:9,13:0.59:22
chr7	107800953	rs12670313	A	G	3283.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:150,162:0.52:312
chr7	107808639	rs12537654	A	G	1616.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:74,79:0.52:153
chr7	107815858	rs11983886	T	A	3723.77	.	AC=1;AF=0.500;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	0/1:201,169:0.46:370
chr7	107818851	rs428459	T	C	6431.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr7	107820911	rs414077	G	T	6204.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr7	107822198	rs2839850	A	G	1225.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:71,56:0.44:127
chr7	107822396	rs2142325	G	A	2336.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:127,114:0.47:241
chr7	107824556	rs10561815	TTA	T	406.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.903;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=2.965;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.53;ReadPosRankSum=-0.613;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:11,17:0.61:28
chr7	107824572	rs192890558	A	T	327.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.152;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=1.906;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.99;ReadPosRankSum=1.544;SOR=1.467;set=HC	GT:AD:AF:DP	0/1:27,14:0.34:41
chr7	107824678	rs6970656	A	G	3463.77	.	AC=1;AF=0.500;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	0/1:154,160:0.51:314
chr7	107824889	rs401433	C	G	3061.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:144,143:0.50:287
chr7	107825108	rs427909	T	C	436.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:18,20:0.53:38
chr7	107831520	rs6962066	T	C	80.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:6,4:0.40:10
chr7	107834613	rs6958498	G	C	15321.77	.	AC=2;AF=1.00;AN=2;DB;DP=554;set=Intersection	GT:AD:AF:DP	1/1:0,544:1.00:544
chr7	107834624	rs6978315	T	C	14716.77	.	AC=2;AF=1.00;AN=2;DB;DP=533;set=Intersection	GT:AD:AF:DP	1/1:0,526:1.00:526
chr7	107834734	rs404287	C	T	14240.77	.	AC=2;AF=1.00;AN=2;DB;DP=524;set=Intersection	GT:AD:AF:DP	1/1:0,519:1.00:519
chr7	107836064	rs34680676	G	GA	1131.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.713;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=21.35;ReadPosRankSum=-1.318;SOR=0.668;set=HC	GT:AD:AF:DP	1/1:2,51:0.96:53
chr7	107836117	rs35825013	GT	G	3179.73	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr7	107838464	rs381318	G	T	1669.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:116,89:0.43:205
chr7	107838637	rs388557	C	A	668.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr7	107849908	rs1269621	G	A	8353.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chr7	107872816	rs2072546	G	A	1266.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:39,57:0.59:96
chr7	107874906	rs1269632	G	A	1528.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr7	107875170	rs1269633	T	C	3533.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr7	108131925	rs3214243	GA	G	1485.73	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:133,93:0.41:226
chr7	108137253	rs11448779	G	GA	5631.73	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:2,143:0.99:145
chr7	108142919	rs11971386	A	G	2859.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.586;ClippingRankSum=0.000;DB;DP=256;ExcessHet=3.0103;FS=5.393;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-0.805;QD=12.12;ReadPosRankSum=0.132;SOR=0.777;set=HC	GT:AD:AF:DP	0/1:94,142:0.60:236
chr7	108155991	rs3763460	T	A	899.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:39,40:0.51:79
chr7	108156050	rs40877	A	C	282.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:15,15:0.50:30
chr7	108206478	rs73193452	A	T	362.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:16,18:0.53:34
chr7	108212353	rs1043615	G	A	4404.77	.	AC=1;AF=0.500;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	0/1:209,210:0.50:419
chr7	108213362	rs61749954	T	C	763.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:38,37:0.49:75
chr7	108524003	rs2280645	T	G	762.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:15,27:0.64:42
chr7	108524444	.	CA	C,CAA	2052.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.042;ClippingRankSum=0.000;DP=323;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.17;MQRankSum=1.166;QD=8.15;ReadPosRankSum=-0.598;SOR=0.655;set=HC	GT:AD:AF:DP	1/2:42,117,93:0.46,0.37:252
chr7	110303527	rs1044729	T	C	261.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:13,11:0.46:24
chr7	110603012	rs17158195	A	T	820.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:55,37:0.40:92
chr7	110603427	rs10225614	G	A	1263.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:47,60:0.56:107
chr7	111372095	rs10953696	T	C	161.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:10,7:0.41:17
chr7	111372244	rs12705796	G	T	1318.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:72,61:0.46:133
chr7	111376840	rs2301678	T	C	5620.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr7	111379582	rs2074115	A	G	5232.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:1,186:0.99:187
chr7	111379634	rs10246451	C	A	2173.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr7	111382272	rs3757649	G	A	4185.77	.	AC=1;AF=0.500;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	0/1:214,200:0.48:414
chr7	111382324	rs3757648	C	T	6142.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr7	111386365	rs3735535	G	C	1811.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:114,91:0.44:205
chr7	111386511	rs3832524	G	GT	8273.73	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr7	111400501	rs17158794	T	A	961.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:42,44:0.51:86
chr7	111474749	.	T	TA	632.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.317;ClippingRankSum=0.000;DP=120;ExcessHet=3.0103;FS=1.815;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.08;ReadPosRankSum=-0.609;SOR=0.452;set=HC	GT:AD:AF:DP	0/1:59,45:0.43:104
chr7	111512032	rs10224326	A	T	3421.77	.	AC=1;AF=0.500;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	0/1:190,174:0.48:364
chr7	111512630	rs28593141	T	C	845.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:49,40:0.45:89
chr7	111535497	rs2074131	A	G	866.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:24,31:0.56:55
chr7	111535863	rs2074132	T	C	584.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:24,23:0.49:47
chr7	111541692	rs12154775	T	C	3591.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:179,170:0.49:349
chr7	111617088	rs3864649	G	A	2578.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:165,127:0.43:292
chr7	111624522	rs2074127	TA	CG	2147.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;JOINED;set=Intersection	GT:AD:AF:DP	0/1:54,57:0.51:111
chr7	111629025	rs17401943	T	A	1077.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:84,55:0.40:139
chr7	111629366	rs2074129	G	A	95.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:17,6:0.26:23
chr7	111634067	rs566714	A	G	346.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:19,16:0.46:35
chr7	111634368	rs847541	A	G	501.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:14,21:0.60:35
chr7	111634389	rs847542	T	C	643.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr7	111926896	rs10710470	CT	C	811.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.559;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=1.506;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=0.609;QD=10.15;ReadPosRankSum=-0.947;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:12,68:0.85:80
chr7	111970316	rs73717530	A	C	455.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:23,19:0.45:42
chr7	112090939	rs55884191	C	T	1409.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:123,78:0.39:201
chr7	112095782	rs6944364	T	G	3045.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr7	112096880	rs6967894	G	A	619.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:25,27:0.52:52
chr7	112097121	rs6968084	C	T	2827.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:108,130:0.55:238
chr7	112099136	rs34627083	TATA	T	303.73	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:22,10:0.31:32
chr7	112101907	rs61603869	AT	A	180.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.458;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=4.771;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.45;ReadPosRankSum=1.821;SOR=0.128;set=HC	GT:AD:AF:DP	0/1:13,15:0.54:28
chr7	112101909	rs2708609	T	A	183.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.323;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=1.786;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.34;ReadPosRankSum=-2.151;SOR=1.214;set=HC	GT:AD:AF:DP	0/1:16,13:0.45:29
chr7	112107982	.	AGGTC	A,ATC	2902.73	.	AC=1,0;AF=0.500,0.00;ALERT;AN=2;DP=120;set=Intersection	GT:AF:DP	0/1:0.58:118
chr7	112107985	.	TC	AA	2944	.	AC=1;AF=0.500;AN=2;BRF=0.41;FR=0.5000;HP=2;HapScore=3;MGOF=3;MMLQ=23;MQ=60.0;NF=34;NR=12;PP=2944;QD=20;SC=CTATATGAGGTCAGAAAAGAA;SbPval=0.53;Source=Platypus;TC=104;TCF=77;TCR=27;TR=46;WE=112108007;WS=112107972;set=Platypus	GT:AD:AF:DP	1/0:58,46:0.44:104
chr7	112107986	.	C	CAA	2902.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.062;ClippingRankSum=0.000;DP=119;ExcessHet=3.0103;FS=0.793;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.81;ReadPosRankSum=-1.685;SOR=0.589;set=HC	GT:AD:AF:DP	0/1:48,69:0.59:117
chr7	112107999	rs1024569	T	C	4640.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:1,166:0.99:167
chr7	112108291	rs1024570	C	T	1966.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr7	112108325	rs3214248	C	CT,CTT	396.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.468;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.29;MQRankSum=0.000;QD=17.25;ReadPosRankSum=2.270;SOR=3.352;set=HC	GT:AD:AF:DP	1/2:3,9,11:0.39,0.48:23
chr7	112115658	rs7817	C	T	559.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr7	112130009	rs11767398	A	C	6767.77	.	AC=1;AF=0.500;AN=2;DB;DP=684;set=Intersection	GT:AD:AF:DP	0/1:347,325:0.48:672
chr7	112575149	rs10231221	A	C	872.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr7	112724417	rs2256044	A	G	14487.77	.	AC=2;AF=1.00;AN=2;DB;DP=519;set=Intersection	GT:AD:AF:DP	1/1:0,509:1.00:509
chr7	112724525	rs1608890	A	G	19558.77	.	AC=2;AF=1.00;AN=2;DB;DP=710;set=Intersection	GT:AD:AF:DP	1/1:0,702:1.00:702
chr7	113091231	rs12705871	A	G	4358.77	.	AC=1;AF=0.500;AN=2;DB;DP=468;set=Intersection	GT:AD:AF:DP	0/1:243,217:0.47:460
chr7	113518502	rs2974938	A	T	10144.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:1,362:1.00:363
chr7	113519719	rs2974944	A	T	8187.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:1,296:1.00:297
chr7	113519796	rs2974942	C	T	10680.77	.	AC=2;AF=1.00;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	1/1:0,388:1.00:388
chr7	114138751	rs2040658	G	C	325.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:14,14:0.50:28
chr7	114210814	rs17137124	T	C	2553.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:94,111:0.54:205
chr7	114296545	rs881732	A	C	5824.77	.	AC=1;AF=0.500;AN=2;DB;DP=547;set=Intersection	GT:AD:AF:DP	0/1:260,275:0.51:535
chr7	114303491	rs34735973	A	AT	723.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.331;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.092;QD=7.03;ReadPosRankSum=-1.815;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:56,47:0.46:103
chr7	114303617	rs35518337	CT	C	934.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.495;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.000;QD=7.25;ReadPosRankSum=1.253;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:46,83:0.64:129
chr7	114304563	rs1378771	C	T	495.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:40,25:0.38:65
chr7	114304630	rs1378772	A	T	48.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:14,4:0.22:18
chr7	114562833	rs35262508	G	GTT	489.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr7	114562947	.	AT	A	704.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.070;ClippingRankSum=0.000;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.47;MQRankSum=1.820;QD=7.74;ReadPosRankSum=-0.474;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:37,54:0.59:91
chr7	114619598	rs2594449	C	A	9283.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:2,342:0.99:344
chr7	115850675	rs11549785	C	T	2923.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:116,130:0.53:246
chr7	115850937	rs1866961	T	C	274.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:20,14:0.41:34
chr7	116140076	rs2535220	T	C	6177.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr7	116140275	rs11767363	T	C	4682.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr7	116146074	rs8940	C	G	6959.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr7	116165233	rs45498702	C	T	2168.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:110,63:0.36:173
chr7	116165237	rs150496113	G	GCC	2218.73	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:111,61:0.35:172
chr7	116165360	rs1997623	A	C	4961.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr7	116165463	rs2742125	T	C	1925.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr7	116364823	rs34822187	CA	C	2520.73	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:67,74:0.52:141
chr7	116380189	rs200752283	A	G	2662.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:92,122:0.57:214
chr7	116381121	rs112241458	GT	G	78.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.264;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.000;QD=0.89;ReadPosRankSum=-0.617;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:64,24:0.27:88
chr7	116409675	rs72220100	CT	C	868.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.530;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=1.676;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.295;QD=6.30;ReadPosRankSum=1.955;SOR=0.935;set=HC	GT:AD:AF:DP	0/1:60,78:0.57:138
chr7	116421967	rs6947629	T	C	1248.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:35,53:0.60:88
chr7	116435768	rs41736	C	T	1588.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:70,73:0.51:143
chr7	116436022	rs2023748	G	A	5113.77	.	AC=1;AF=0.500;AN=2;DB;DP=503;set=Intersection	GT:AD:AF:DP	0/1:255,239:0.48:494
chr7	116436097	rs41737	G	A	3319.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:166,157:0.49:323
chr7	116550456	rs2074025	C	T	295.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.045;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=1.475;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.24;ReadPosRankSum=-0.290;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:17,15:0.47:32
chr7	116552070	rs372550398	A	G	801.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:34,38:0.53:72
chr7	116596697	rs6960131	A	G	5570.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr7	116598735	rs6466595	A	G	5038.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:3,169:0.98:172
chr7	116600049	rs10262671	A	T	4013.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr7	116607172	rs35773173	CT	C	158.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.056;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.90;ReadPosRankSum=0.318;SOR=1.473;set=HC	GT:AD:AF:DP	0/1:6,17:0.74:23
chr7	116607501	rs10259502	T	C	4418.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr7	116660464	rs5886844	AC	A	3229.73	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr7	116660803	rs7788320	A	G	2964.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr7	116778443	.	AT	A	427.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.377;ClippingRankSum=0.000;DP=137;ExcessHet=3.0103;FS=1.575;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=1.465;QD=3.24;ReadPosRankSum=-0.360;SOR=0.924;set=HC	GT:AD:AF:DP	0/1:86,46:0.35:132
chr7	116810812	rs145123215	TC	T	932.73	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:35,24:0.41:59
chr7	116810818	rs190230458	C	A	938.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:37,27:0.42:64
chr7	116811037	rs193562	T	C	7071.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr7	116811139	rs193563	T	C	565.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:22,21:0.49:43
chr7	116829463	rs185187	T	C	2895.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:144,139:0.49:283
chr7	116960722	rs201120939	G	A	3462.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:168,166:0.50:334
chr7	116962933	rs34431449	T	TC	4371.73	.	AC=1;AF=0.500;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	0/1:175,171:0.49:346
chr7	117023237	rs10278953	A	G	207.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:13,11:0.46:24
chr7	117066718	rs7784156	C	G	666.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:27,26:0.49:53
chr7	117067040	rs10242827	C	T	778.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:32,35:0.52:67
chr7	117176815	rs79718042	T	A	306.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:6,13:0.68:19
chr7	117188660	.	ATG	A	1521.73	.	AC=1;AF=0.500;AN=2;DP=126;set=Intersection	GT:AD:AF:DP	0/1:48,68:0.59:116
chr7	117199533	rs213950	G	A	2609.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:116,126:0.52:242
chr7	117235055	rs1042077	T	G	840.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:59,46:0.44:105
chr7	117235196	rs4148712	CAT	C	242.73	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:10,9:0.47:19
chr7	117246636	rs35050470	G	A	59.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.752;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=5.398;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.06;ReadPosRankSum=2.201;SOR=2.472;set=HC	GT:AD:AF:DP	0/1:23,6:0.21:29
chr7	117254527	rs213981	A	C	1447.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:34,60:0.64:94
chr7	117307108	rs1800136	G	A	2376.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:129,119:0.48:248
chr7	117361034	rs112341621	A	ATAAT	439.73	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:9,12:0.57:21
chr7	117513445	rs201926476	C	T	4436.77	.	AC=1;AF=0.500;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	0/1:197,211:0.52:408
chr7	117867960	.	CT	C	180.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.419;ClippingRankSum=0.000;DP=67;ExcessHet=3.0103;FS=1.121;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.78;ReadPosRankSum=-1.057;SOR=1.025;set=HC	GT:AD:AF:DP	0/1:42,23:0.35:65
chr7	117874308	rs10267938	C	T	425.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr7	120428607	rs41622	G	A	3868.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr7	120428799	rs41623	C	A	9243.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:0,334:1.00:334
chr7	120450658	rs7805733	G	A	10538.77	.	AC=2;AF=1.00;AN=2;DB;DP=413;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.08;QD=26.15;SOR=1.136;set=HC	GT:AD:AF:DP	1/1:0,403:1.00:403
chr7	120450678	rs112555207	T	TCA	1702.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.054;ClippingRankSum=0.000;DB;DP=321;ExcessHet=3.0103;FS=4.779;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.231;QD=9.01;ReadPosRankSum=2.372;SOR=1.149;set=HC	GT:AD:AF:DP	0/1:113,76:0.40:189
chr7	120590786	rs11408222	C	CG	606.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr7	120613419	rs2721369	A	G	980.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr7	120704289	rs2721375	C	T	15147.77	.	AC=2;AF=1.00;AN=2;DB;DP=557;set=Intersection	GT:AD:AF:DP	1/1:0,550:1.00:550
chr7	120704306	rs79296869	A	G	5385.77	.	AC=1;AF=0.500;AN=2;DB;DP=573;set=Intersection	GT:AD:AF:DP	0/1:294,269:0.48:563
chr7	120739962	rs199844199	GTT	G,GT	4387.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.398;ClippingRankSum=0.000;DB;DP=335;ExcessHet=3.0103;FS=1.510;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.10;MQRankSum=0.658;QD=13.84;ReadPosRankSum=0.042;SOR=0.564;set=HC	GT:AD:AF:DP	1/2:47,141,129:0.44,0.41:317
chr7	120740103	rs798937	G	T	14520.77	.	AC=2;AF=1.00;AN=2;DB;DP=562;set=Intersection	GT:AD:AF:DP	1/1:3,545:0.99:548
chr7	120740225	rs1917112	C	G	1872.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:81,84:0.51:165
chr7	120764477	rs1524498	G	C	5178.77	.	AC=1;AF=0.500;AN=2;DB;DP=579;set=Intersection	GT:AD:AF:DP	0/1:314,262:0.45:576
chr7	120764573	rs798948	C	A	4723.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.302;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=3.557;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=28.29;ReadPosRankSum=0.509;SOR=2.288;set=HC	GT:AD:AF:DP	1/1:2,165:0.99:167
chr7	120765954	rs798949	T	C	4831.77	.	AC=1;AF=0.500;AN=2;DB;DP=507;set=Intersection	GT:AD:AF:DP	0/1:251,247:0.50:498
chr7	120770437	rs34320754	G	A	392.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:22,17:0.44:39
chr7	120776097	rs41281692	C	G	678.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.577;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=6.841;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.30;ReadPosRankSum=-1.561;SOR=0.214;set=HC	GT:AD:AF:DP	0/1:38,35:0.48:73
chr7	120776281	rs13232048	G	T	254.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:5,10:0.67:15
chr7	120781884	rs11979314	G	T	1920.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr7	120884453	rs2272196	G	A	783.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:45,37:0.45:82
chr7	121022811	.	C	CA	31	.	AC=1;AF=0.500;AN=2;BRF=0.33;FR=0.5051;HP=13;HapScore=2;MGOF=4;MMLQ=28;MQ=60.0;NF=2;NR=0;PP=31;QD=20.0;SC=AAGACTTGAACAAAAAAAAAA;SbPval=1.0;Source=Platypus;TC=4;TCF=4;TCR=0;TR=2;WE=121022819;WS=121022801;set=Platypus	GT:AD:AF:DP	1/0:2,2:0.50:4
chr7	121080929	rs6961822	A	G	4012.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr7	121081052	rs6962156	C	T	8032.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr7	121081115	rs6466786	A	C	5211.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr7	121164363	rs2896305	C	G	4312.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr7	121513382	rs3069073	T	TCA	166.73	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:11,8:0.42:19
chr7	121548780	rs10236018	A	C	1116.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:52,58:0.53:110
chr7	121616250	rs4629793	G	A	694.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:36,34:0.49:70
chr7	121636647	rs7795588	T	C	1564.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:71,71:0.50:142
chr7	121653374	rs35947407	GTGA	G	7134.73	.	AC=1;AF=0.500;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	0/1:215,191:0.47:406
chr7	121653398	rs1147504	G	A	4668.77	.	AC=1;AF=0.500;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	0/1:242,215:0.47:457
chr7	121680783	.	CGTGTGTGTGTGTGTGTGT	C	248.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.306;ClippingRankSum=-0.000;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=24.87;ReadPosRankSum=0.610;SOR=1.863;set=HC	GT:AD:AF:DP	0/1:3,7:0.70:10
chr7	121684718	rs1147487	A	G	1265.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:78,56:0.42:134
chr7	121698827	rs1206381	A	C	690.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:34,29:0.46:63
chr7	121699151	rs59593536	AT	A	339.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.163;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=4.623;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.024;QD=6.29;ReadPosRankSum=0.317;SOR=1.850;set=HC	GT:AD:AF:DP	0/1:21,33:0.61:54
chr7	121699789	rs55805372	C	CT	60.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.768;ClippingRankSum=0.000;DB;DP=296;ExcessHet=3.0103;FS=0.663;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.22;ReadPosRankSum=0.977;SOR=0.786;set=HC	GT:AD:AF:DP	0/1:234,43:0.16:277
chr7	121719586	rs1206368	C	T	312.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:40,17:0.30:57
chr7	121719823	rs1206369	G	A	301.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:25,14:0.36:39
chr7	121732778	.	CA	C	54.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.181;ClippingRankSum=0.000;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.76;ReadPosRankSum=-0.079;SOR=0.511;set=HC	GT:AD:AF:DP	0/1:56,16:0.22:72
chr7	121758290	rs279677	G	C	1652.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:73,68:0.48:141
chr7	121942832	rs10685687	G	GACA	23787.73	.	AC=2;AF=1.00;AN=2;DB;DP=508;set=Intersection	GT:AD:AF:DP	1/1:0,502:1.00:502
chr7	121942847	rs6968786	G	C	25095.77	.	AC=2;AF=1.00;AN=2;DB;DP=598;set=Intersection	GT:AD:AF:DP	1/1:0,593:1.00:593
chr7	121943642	rs111662975	A	G	1907.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.071;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=64.54;MQRankSum=0.948;QD=36.00;ReadPosRankSum=0.975;SOR=2.507;set=HC	GT:AD:AF:DP	1/1:1,52:0.98:53
chr7	121944527	rs11761299	T	C	3716.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr7	121960407	rs1348442	T	G	1290.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:45,51:0.53:96
chr7	121960438	rs1443749	C	T	765.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:20,32:0.62:52
chr7	121985541	rs798685	T	C	4379.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr7	121985556	rs798684	C	G	5078.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr7	122000900	rs45489900	C	T	768.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:59,39:0.40:98
chr7	122026263	rs73216113	T	A	74.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:5,4:0.44:9
chr7	122033379	rs2074588	A	G	4389.77	.	AC=1;AF=0.500;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	0/1:194,203:0.51:397
chr7	122078414	rs2074589	T	G	6554.77	.	AC=1;AF=0.500;AN=2;DB;DP=717;set=Intersection	GT:AD:AF:DP	0/1:377,337:0.47:714
chr7	122091566	rs3764810	C	G	866.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:48,46:0.49:94
chr7	122131535	rs1476589	G	A	709.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:58,35:0.38:93
chr7	122303321	rs2251761	C	T	3722.77	.	AC=1;AF=0.500;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	0/1:180,161:0.47:341
chr7	122634843	rs1204014	C	T	3636.77	.	AC=1;AF=0.500;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	0/1:223,181:0.45:404
chr7	122635024	rs860170	C	T	13976.77	.	AC=2;AF=1.00;AN=2;DB;DP=523;set=Intersection	GT:AD:AF:DP	1/1:0,513:1.00:513
chr7	122757505	rs28364221	A	AT	2421.73	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:153,133:0.47:286
chr7	122769378	.	CTGTGTGTGTG	C,CTGTGTGTG	6304.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.991;ClippingRankSum=0.000;DP=366;ExcessHet=3.0103;FS=3.206;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.03;MQRankSum=0.255;QD=23.97;ReadPosRankSum=-0.213;SOR=1.339;set=HC	GT:AD:AF:DP	1/2:8,148,107:0.56,0.41:263
chr7	122809111	rs1880178	T	C	2595.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr7	123104950	rs138866231	C	T	1037.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:86,55:0.39:141
chr7	123142588	rs11770523	A	T	877.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:46,43:0.48:89
chr7	123150236	rs4276609	C	T	274.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:17,14:0.45:31
chr7	123256427	rs6962756	C	T	7859.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr7	123264804	rs11769381	C	T	4063.77	.	AC=1;AF=0.500;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	0/1:222,197:0.47:419
chr7	123269118	rs4731112	G	C	8702.77	.	AC=1;AF=0.500;AN=2;DB;DP=804;set=Intersection	GT:AD:AF:DP	0/1:391,403:0.51:794
chr7	123269976	rs3993666	G	GGC	763.73	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:27,21:0.44:48
chr7	123295964	rs7779099	C	T	1794.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:54,81:0.60:135
chr7	123296320	rs12538876	C	A	204.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:15,10:0.40:25
chr7	123301940	rs7809453	A	G	1411.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:51,57:0.53:108
chr7	123324546	rs5887151	AAT	A	481.73	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:27,21:0.44:48
chr7	123324745	rs147291543	CCAG	C	1565.73	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:19,41:0.68:60
chr7	123329046	rs62472074	C	T	437.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.079;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=3.462;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.22;ReadPosRankSum=0.548;SOR=0.227;set=HC	GT:AD:AF:DP	0/1:19,20:0.51:39
chr7	123329060	rs67743898	GTC	G,GTCTC	726.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.827;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=18.17;ReadPosRankSum=-0.056;SOR=0.914;set=HC	GT:AD:AF:DP	1/2:4,25,11:0.62,0.28:40
chr7	123334696	rs35280100	GT	G	1133.73	.	AC=1;AF=0.500;AN=2;DB;DP=76;MQ=60.14;set=Intersection	GT:AD:AF:DP	0/1:37,39:0.51:76
chr7	123360398	rs11377481	C	CA	269.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.012;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.225;QD=2.52;ReadPosRankSum=0.681;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:75,32:0.30:107
chr7	123388732	rs1054706	G	A	4088.77	.	AC=1;AF=0.500;AN=2;DB;DP=367;MQ=60.03;set=Intersection	GT:AD:AF:DP	0/1:172,193:0.53:365
chr7	123594206	rs2285996	G	A	5850.77	.	AC=1;AF=0.500;AN=2;DB;DP=542;set=Intersection	GT:AD:AF:DP	0/1:259,265:0.51:524
chr7	123594903	rs6972388	A	T	405.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:33,18:0.35:51
chr7	123599483	rs11773285	G	T	1314.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:82,54:0.40:136
chr7	124387092	rs3735270	C	G	5463.77	.	AC=1;AF=0.500;AN=2;DB;DP=503;set=Intersection	GT:AD:AF:DP	0/1:262,237:0.47:499
chr7	124387374	rs724356	A	G	2716.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr7	124462655	rs76436625	T	C	5406.77	.	AC=1;AF=0.500;AN=2;DB;DP=491;set=Intersection	GT:AD:AF:DP	0/1:227,254:0.53:481
chr7	124465509	rs10250202	A	C	86.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:7,5:0.42:12
chr7	124469267	rs10263573	A	T	1291.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:81,63:0.44:144
chr7	124475296	rs142780416	TAAACA	T	3807.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.779;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=4.647;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.000;QD=19.23;ReadPosRankSum=0.571;SOR=0.426;set=HC	GT:AD:AF:DP	0/1:98,100:0.51:198
chr7	124477182	rs7787804	A	G	617.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.538;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=2.580;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.28;ReadPosRankSum=1.823;SOR=0.969;set=HC	GT:AD:AF:DP	0/1:81,36:0.31:117
chr7	124481245	rs3815221	G	A	1806.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:86,86:0.50:172
chr7	124486980	rs7794637	T	C	1353.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:80,68:0.46:148
chr7	124492038	rs7784168	T	C	664.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:21,28:0.57:49
chr7	124499002	rs6977407	AT	CA	2796.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;JOINED;set=Intersection	GT:AD:AF:DP	0/1:82,74:0.47:156
chr7	124533680	rs4377885	C	T	5771.77	.	AC=1;AF=0.500;AN=2;DB;DP=605;set=Intersection	GT:AD:AF:DP	0/1:320,277:0.46:597
chr7	124533740	rs10954048	C	T	7774.77	.	AC=1;AF=0.500;AN=2;DB;DP=833;set=Intersection	GT:AD:AF:DP	0/1:436,385:0.47:821
chr7	124540841	rs4383910	A	C	756.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:24,34:0.59:58
chr7	124540872	rs7782354	C	T	813.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:45,44:0.49:89
chr7	124540969	rs7782525	C	G	1537.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:72,78:0.52:150
chr7	124541022	rs7801755	T	C	799.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:34,41:0.55:75
chr7	125588728	rs17149089	C	T	554.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:28,27:0.49:55
chr7	125753485	rs1419526	C	A	1984.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr7	125753551	rs1419527	A	G	8757.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.17;QD=45.38;SOR=1.399;set=HC	GT:AD:AF:DP	1/1:0,193:1.00:193
chr7	125753556	rs5887285	A	AG	9007.73	.	AC=2;AF=1.00;AN=2;DB;DP=205;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.16;QD=44.59;SOR=1.408;set=HC	GT:AD:AF:DP	1/1:0,202:1.00:202
chr7	125753603	rs1419528	A	G	7699.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.07;QD=24.52;SOR=0.800;set=HC	GT:AD:AF:DP	1/1:0,314:1.00:314
chr7	125753636	rs1419529	A	G	8611.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,325:1.00:325
chr7	125753737	rs4395830	A	C	2881.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr7	126079144	rs712723	A	G	2567.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:90,123:0.58:213
chr7	126410171	rs35648111	G	C	1629.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:53,63:0.54:116
chr7	126542667	rs78124913	A	T	6386.77	.	AC=1;AF=0.500;AN=2;DB;DP=722;set=Intersection	GT:AD:AF:DP	0/1:393,326:0.45:719
chr7	126544012	rs769199	T	C	2154.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.34;QD=31.69;SOR=5.610;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr7	126698351	rs11563750	A	C	2310.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:97,112:0.54:209
chr7	127026342	rs6962137	G	A	2117.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:4,76:0.95:80
chr7	127222157	rs3735644	G	A	5375.77	.	AC=1;AF=0.500;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	0/1:197,240:0.55:437
chr7	127222521	rs33973710	G	A	7179.77	.	AC=1;AF=0.500;AN=2;DB;DP=652;set=Intersection	GT:AD:AF:DP	0/1:315,334:0.51:649
chr7	127224193	rs3735643	A	G	3306.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr7	127224286	rs3735642	A	G	3020.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:158,143:0.48:301
chr7	127228728	rs12536382	C	T	2416.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr7	127230276	rs1419428	A	C	2070.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr7	127234121	rs806212	C	T	1856.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr7	127250907	rs712700	T	C	1430.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:94,67:0.42:161
chr7	127251085	rs150578361	T	G	1683.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:108,78:0.42:186
chr7	127251188	rs712701	T	G	1715.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:92,83:0.47:175
chr7	127252988	rs376039555	AGGAT	A	816.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.835;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=3.066;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=17.38;ReadPosRankSum=-0.231;SOR=0.318;set=HC	GT:AD:AF:DP	0/1:24,23:0.49:47
chr7	127253714	rs3835004	A	AG	796.73	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:30,25:0.45:55
chr7	127254457	rs594141	G	A	826.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:43,41:0.49:84
chr7	127255285	rs698406	C	G	1610.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:56,63:0.53:119
chr7	127255795	rs327516	C	G	1520.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:57,72:0.56:129
chr7	127347733	rs11972774	G	C	4178.77	.	AC=1;AF=0.500;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	0/1:176,191:0.52:367
chr7	127347820	rs376441748	AGT	A,AGTGTGT	537.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.024;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=20.68;ReadPosRankSum=-1.705;SOR=1.022;set=HC	GT:AD:AF:DP	1/2:2,17,7:0.65,0.27:26
chr7	127361269	rs918793	G	A	950.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:64,46:0.42:110
chr7	127447499	rs325440	A	T	635.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:35,29:0.45:64
chr7	127484422	.	G	A	2775.77	.	AC=1;AF=0.500;AN=2;DP=267;set=Intersection	GT:AD:AF:DP	0/1:128,134:0.51:262
chr7	127637816	rs17151639	A	G	5870.77	.	AC=1;AF=0.500;AN=2;DB;DP=692;set=Intersection	GT:AD:AF:DP	0/1:377,306:0.45:683
chr7	127721507	rs322825	T	C	4925.77	.	AC=1;AF=0.500;AN=2;DB;DP=504;set=Intersection	GT:AD:AF:DP	0/1:257,244:0.49:501
chr7	127894350	rs28954111	G	A	1152.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:33,46:0.58:79
chr7	127950725	rs12850	G	A	998.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:46,41:0.47:87
chr7	127957602	rs2290225	A	C	566.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:15,21:0.58:36
chr7	127957893	rs2290226	T	C	6628.77	.	AC=1;AF=0.500;AN=2;DB;DP=597;set=Intersection	GT:AD:AF:DP	0/1:285,308:0.52:593
chr7	127973133	rs359650	T	C	1557.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr7	127976119	rs359651	G	T	3156.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:150,142:0.49:292
chr7	127977304	rs11496082	C	T	2997.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:101,128:0.56:229
chr7	127991133	rs891215	G	A	5494.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr7	127992437	rs1651945	C	G	9626.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:0,357:1.00:357
chr7	128000091	rs359642	G	A	1855.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr7	128035152	rs28580600	G	A	7534.77	.	AC=1;AF=0.500;AN=2;DB;DP=792;set=Intersection	GT:AD:AF:DP	0/1:409,377:0.48:786
chr7	128037205	rs200212855	GTT	G	81.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.151;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=1.683;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.90;ReadPosRankSum=0.301;SOR=0.340;set=HC	GT:AD:AF:DP	0/1:34,9:0.21:43
chr7	128043612	.	C	CA	529.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.280;ClippingRankSum=0.000;DP=224;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=1.727;QD=2.98;ReadPosRankSum=1.359;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:117,61:0.34:178
chr7	128095876	rs2732393	A	G	5198.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr7	128102508	rs10647404	C	CTCTT	327.73	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:32,11:0.26:43
chr7	128116695	rs146234146	A	G	1063.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:58,51:0.47:109
chr7	128119514	rs1065267	G	A	3679.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.152;ClippingRankSum=0.000;DB;DP=744;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.74;MQRankSum=-0.160;QD=5.01;ReadPosRankSum=-1.262;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:524,211:0.29:735
chr7	128133984	rs2562741	G	A	6746.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr7	128137993	rs10245559	T	G	1094.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:45,47:0.51:92
chr7	128140982	rs10257897	T	C	4586.77	.	AC=1;AF=0.500;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	0/1:221,224:0.50:445
chr7	128141083	rs10271878	A	G	4441.77	.	AC=1;AF=0.500;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	0/1:168,211:0.56:379
chr7	128141136	rs3802007	T	G	2644.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:71,111:0.61:182
chr7	128141865	rs1053124	T	C	7057.77	.	AC=1;AF=0.500;AN=2;DB;DP=660;set=Intersection	GT:AD:AF:DP	0/1:305,340:0.53:645
chr7	128142023	rs12539729	A	T	3228.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.589;ClippingRankSum=0.000;DB;DP=448;ExcessHet=3.0103;FS=1.154;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-0.846;QD=7.71;ReadPosRankSum=3.870;SOR=0.832;set=HC	GT:AD:AF:DP	0/1:243,176:0.42:419
chr7	128142033	rs35586323	T	C	6796.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.902;ClippingRankSum=0.000;DB;DP=392;ExcessHet=3.0103;FS=0.383;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=-0.923;QD=17.47;ReadPosRankSum=1.216;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:209,180:0.46:389
chr7	128220111	rs139965573	G	T	3121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.068;ClippingRankSum=0.000;DB;DP=275;ExcessHet=3.0103;FS=4.020;MLEAC=1;MLEAF=0.500;MQ=50.84;MQRankSum=0.079;QD=11.35;ReadPosRankSum=-0.393;SOR=0.944;set=HC	GT:AD:AF:DP	0/1:128,147:0.53:275
chr7	128248198	rs201811442	G	A	1546.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.397;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=0.876;MLEAC=1;MLEAF=0.500;MQ=45.61;MQRankSum=-2.559;QD=13.69;ReadPosRankSum=0.433;SOR=0.841;set=HC	GT:AD:AF:DP	0/1:51,62:0.55:113
chr7	128298920	rs114191334	C	T	1168.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:71,59:0.45:130
chr7	128298973	rs58211466	G	GT	294.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.101;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=1.507;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=0.000;QD=6.85;ReadPosRankSum=2.593;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:16,27:0.63:43
chr7	128299031	rs144813597	C	T	264.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.711;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=9.944;MLEAC=1;MLEAF=0.500;MQ=58.66;MQRankSum=-1.063;QD=14.71;ReadPosRankSum=-0.654;SOR=0.288;set=HC	GT:AD:AF:DP	0/1:5,13:0.72:18
chr7	128312450	rs11769769	C	T	621.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:35,28:0.44:63
chr7	128312463	rs74343948	C	G	956.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:34,43:0.56:77
chr7	128312703	rs67851440	AG	A	236.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.764;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=2.282;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.84;ReadPosRankSum=-1.521;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:9,11:0.55:20
chr7	128315588	rs13308199	T	C	4216.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr7	128315672	rs78302479	A	ATTC	9568.73	.	AC=1;AF=0.500;AN=2;DB;DP=493;set=Intersection	GT:AD:AF:DP	0/1:242,244:0.50:486
chr7	128315791	rs61738927	C	G	6669.77	.	AC=1;AF=0.500;AN=2;DB;DP=618;MQ=60.05;set=Intersection	GT:AD:AF:DP	0/1:295,317:0.52:612
chr7	128315882	rs17169357	C	A	1594.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:82,79:0.49:161
chr7	128317658	rs6467210	C	T	1286.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:57,62:0.52:119
chr7	128317882	rs7797745	T	C	1272.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:59,55:0.48:114
chr7	128317931	rs139645567	CTG	C	861.73	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:22,24:0.52:46
chr7	128318006	rs67602452	G	T	158.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.596;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=1.952;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.82;ReadPosRankSum=1.377;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:10,8:0.44:18
chr7	128319982	rs2290229	A	T	2736.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:94,126:0.57:220
chr7	128322918	rs4554406	A	G	1117.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:57,57:0.50:114
chr7	128323034	rs1109552	A	G	3505.77	.	AC=1;AF=0.500;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	0/1:260,189:0.42:449
chr7	128359133	rs6949056	C	T	2062.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:122,100:0.45:222
chr7	128364895	rs6952563	A	G	2067.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:111,94:0.46:205
chr7	128369870	rs12667612	G	A	2224.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:104,102:0.50:206
chr7	128371206	rs339066	G	A	5512.77	.	AC=1;AF=0.500;AN=2;DB;DP=626;set=Intersection	GT:AD:AF:DP	0/1:334,285:0.46:619
chr7	128371246	rs41274144	C	T	4078.77	.	AC=1;AF=0.500;AN=2;DB;DP=484;set=Intersection	GT:AD:AF:DP	0/1:266,211:0.44:477
chr7	128388541	rs12538139	G	A	3176.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr7	128394606	rs2307040	C	T	10081.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	1/1:0,381:1.00:381
chr7	128399231	rs41274152	T	C	446.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr7	128409225	rs1043550	A	G	9148.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:2,337:0.99:339
chr7	128413994	rs111528380	A	G	1244.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.928;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=4.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.47;ReadPosRankSum=1.344;SOR=0.320;set=HC	GT:AD:AF:DP	0/1:34,52:0.60:86
chr7	128414484	rs17397588	T	C	3192.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr7	128415195	rs1799922	T	G	7173.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr7	128415290	rs17476081	C	T	2450.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr7	128415860	rs3807128	C	T	10657.77	.	AC=2;AF=1.00;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	1/1:0,391:1.00:391
chr7	128434900	rs3736279	T	C	2582.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:119,126:0.51:245
chr7	128444820	rs2291573	A	G	2289.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:79,106:0.57:185
chr7	128445370	rs1565629	G	A	838.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:43,38:0.47:81
chr7	128449405	rs2307037	G	A	120.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:23,8:0.26:31
chr7	128450532	rs7799186	G	A	1323.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:45,55:0.55:100
chr7	128451353	rs111409895	C	CAGAGAGCCTGGGA	4142.73	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr7	128451741	rs17165198	T	C	1071.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:42,48:0.53:90
chr7	128455767	rs4728137	C	G	2985.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr7	128455916	rs2270590	G	A	1485.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.961;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=2.468;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.54;ReadPosRankSum=-0.653;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:115,82:0.42:197
chr7	128461720	rs3734974	G	A	980.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:25,40:0.62:65
chr7	128470838	rs3734972	C	T	6706.77	.	AC=1;AF=0.500;AN=2;DB;DP=565;set=Intersection	GT:AD:AF:DP	0/1:265,290:0.52:555
chr7	128477472	rs2291560	T	C	10586.77	.	AC=1;AF=0.500;AN=2;DB;DP=927;set=Intersection	GT:AD:AF:DP	0/1:443,482:0.52:925
chr7	128477547	rs2291561	T	C	17708.77	.	AC=1;AF=0.500;AN=2;DB;DP=1668;set=Intersection	GT:AD:AF:DP	0/1:812,852:0.51:1664
chr7	128477620	rs55907818	G	A	16934.77	.	AC=1;AF=0.500;AN=2;DB;DP=1544;set=Intersection	GT:AD:AF:DP	0/1:737,795:0.52:1532
chr7	128479982	rs61448157	C	G	3748.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr7	128480791	rs2291564	C	G	2537.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:113,113:0.50:226
chr7	128483227	rs2291567	T	C	1601.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:52,71:0.58:123
chr7	128484816	rs3734973	A	G	6057.77	.	AC=1;AF=0.500;AN=2;DB;DP=588;set=Intersection	GT:AD:AF:DP	0/1:293,287:0.49:580
chr7	128486363	rs34373805	C	T	4449.77	.	AC=1;AF=0.500;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	0/1:206,195:0.49:401
chr7	128487866	rs2249128	T	C	5779.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr7	128488734	rs2291569	G	A	12790.77	.	AC=1;AF=0.500;AN=2;DB;DP=1046;set=Intersection	GT:AD:AF:DP	0/1:457,574:0.56:1031
chr7	128490553	rs13227216	T	C	1508.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:44,63:0.59:107
chr7	128498630	rs145777348	TACACAC	T	1551.73	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:25,40:0.62:65
chr7	128506970	rs4323418	T	C	1090.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:65,47:0.42:112
chr7	128527093	rs11982744	T	G	5417.77	.	AC=1;AF=0.500;AN=2;DB;DP=527;set=Intersection	GT:AD:AF:DP	0/1:258,258:0.50:516
chr7	128531072	rs3734971	T	A	1137.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr7	128532551	rs78082728	A	G	1212.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:109,67:0.38:176
chr7	128532980	rs7782976	T	C	11279.77	.	AC=2;AF=1.00;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	1/1:0,417:1.00:417
chr7	128533514	rs34061445	T	TC	6255.73	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr7	128542982	rs11975930	G	A	5864.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr7	128543678	rs6955736	C	T	8480.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,323:1.00:323
chr7	128544133	rs56144153	G	T	7713.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr7	128544621	rs117820850	C	G	2495.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:119,104:0.47:223
chr7	128547512	rs6948542	G	A	5410.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:1,211:1.00:212
chr7	128548463	rs7786945	A	C	34708.77	.	AC=2;AF=1.00;AN=2;DB;DP=1326;MQ=60.04;set=Intersection	GT:AD:AF:DP	1/1:10,1308:0.99:1318
chr7	128550577	rs75709678	C	T	799.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:2,31:0.94:33
chr7	128550680	rs11335250	GC	G	3926.73	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr7	128550894	rs1609545	G	A	1134.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.37;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr7	128587351	rs199508964	CACTCTGCAGCCGCCCACTCTGCGGCCGCCT	C	3538.73	.	AC=1;AF=0.500;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	0/1:181,177:0.49:358
chr7	128607384	rs8043	G	A	3239.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:157,159:0.50:316
chr7	128610484	rs1691779	A	G	3155.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr7	128629993	rs41274158	A	G	1164.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:95,66:0.41:161
chr7	128630227	rs1154329	C	T	2775.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:141,133:0.49:274
chr7	128630313	rs6969930	T	C	830.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:50,37:0.43:87
chr7	128640334	rs4728144	A	T	288.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:27,20:0.43:47
chr7	128641226	rs2305324	G	C	3825.77	.	AC=1;AF=0.500;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	0/1:225,185:0.45:410
chr7	128645292	rs11768572	A	C	360.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:19,15:0.44:34
chr7	128694976	rs2242028	C	T	2420.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr7	128766505	rs6952057	A	C	643.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr7	128766528	rs10464697	G	C	2241.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.83;QD=45.75;SOR=4.935;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr7	128766533	rs10464698	A	C	2363.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.07;QD=42.98;SOR=4.693;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr7	128766553	rs6952077	A	G	2220.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.26;QD=27.08;SOR=3.428;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr7	128767410	rs10247566	A	G	21416.77	.	AC=2;AF=1.00;AN=2;DB;DP=813;MQ=59.81;set=Intersection	GT:AD:AF:DP	1/1:0,806:1.00:806
chr7	128767490	rs7809681	T	C	22928.77	.	AC=2;AF=1.00;AN=2;DB;DP=538;set=Intersection	GT:AD:AF:DP	1/1:2,533:1.00:535
chr7	128767506	rs7809687	T	G	22191.77	.	AC=2;AF=1.00;AN=2;DB;DP=516;set=Intersection	GT:AD:AF:DP	1/1:2,511:1.00:513
chr7	128784723	rs13309419	A	G	170.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr7	128785008	rs13243618	C	T	3928.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr7	128802936	rs919551	T	C	1989.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr7	128804218	rs2566892	G	A	2393.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr7	128843169	rs2566871	C	T	2329.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr7	128845018	rs2703091	C	T	14491.77	.	AC=2;AF=1.00;AN=2;DB;DP=538;set=Intersection	GT:AD:AF:DP	1/1:2,530:1.00:532
chr7	128845277	rs2075777	G	C	5115.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr7	128845325	rs2566872	G	A	5979.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr7	128845907	rs2075779	T	C	3809.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr7	128846328	rs2228617	G	C	14873.77	.	AC=2;AF=1.00;AN=2;DB;DP=539;set=Intersection	GT:AD:AF:DP	1/1:0,526:1.00:526
chr7	128846469	rs2735842	A	G	2872.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr7	129028857	rs35404531	AT	A	1739.73	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:107,124:0.54:231
chr7	129029093	rs10954231	A	G	1337.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:67,55:0.45:122
chr7	129029391	rs1541711	C	T	658.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:50,34:0.40:84
chr7	129037029	rs17168750	G	C	3561.77	.	AC=1;AF=0.500;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	0/1:184,173:0.48:357
chr7	129040018	rs17552411	T	C	650.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:13,27:0.68:40
chr7	129049507	rs6467244	A	G	3065.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr7	129067053	rs4728164	T	C	2106.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:81,87:0.52:168
chr7	129074556	.	C	G	98.77	.	AC=1;AF=0.500;AN=2;DP=8;set=Intersection	GT:AD:AF:DP	0/1:3,5:0.62:8
chr7	129091302	rs4731578	A	G	182.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:13,10:0.43:23
chr7	129094085	rs117576083	C	A	816.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:34,37:0.52:71
chr7	129094195	rs581829	T	C	1280.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr7	129098313	rs3214796	AC	A	696.73	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:15,25:0.62:40
chr7	129102743	rs34275118	A	G	5211.77	.	AC=1;AF=0.500;AN=2;DB;DP=503;set=Intersection	GT:AD:AF:DP	0/1:245,257:0.51:502
chr7	129125296	rs200708461	C	CA	93.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.635;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=2.881;MLEAC=1;MLEAF=0.500;MQ=60.83;MQRankSum=0.431;QD=7.81;ReadPosRankSum=-0.731;SOR=0.197;set=HC	GT:AD:AF:DP	0/1:4,8:0.67:12
chr7	129125352	rs10500117	C	G	1134.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:36,57:0.61:93
chr7	129125750	rs692625	G	A	531.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:9,22:0.71:31
chr7	129142694	rs691332	C	G	11276.77	.	AC=2;AF=1.00;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	1/1:1,432:1.00:433
chr7	129142775	rs610591	G	A	5028.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr7	129297447	rs11446444	A	AT	129.84	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.819;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.71;ReadPosRankSum=1.913;SOR=0.437;set=HC	GT:AD:AF:DP	0/1:20,15:0.43:35
chr7	129330353	rs3735006	C	T	2946.77	.	AC=1;AF=0.500;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	0/1:232,161:0.41:393
chr7	129349101	rs11769146	G	A	727.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:20,28:0.58:48
chr7	129350170	rs3736626	A	C	1359.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:56,57:0.50:113
chr7	129351444	rs1962038	C	G	1078.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:59,52:0.47:111
chr7	129356939	rs12154342	T	G	662.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:29,26:0.47:55
chr7	129410144	rs4467881	G	A	545.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:28,25:0.47:53
chr7	129410195	rs4541843	G	A	786.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:59,43:0.42:102
chr7	129410227	rs76481776	C	T	1503.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:65,70:0.52:135
chr7	129504928	rs17639487	A	G	920.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:51,44:0.46:95
chr7	129658655	rs2242488	A	G	96.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:18,6:0.25:24
chr7	129664312	rs1464890	T	C	3265.77	.	AC=1;AF=0.500;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	0/1:164,155:0.49:319
chr7	129680994	rs34409527	A	ATG	960.73	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:51,39:0.43:90
chr7	129736880	rs12531444	G	A	2917.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:126,141:0.53:267
chr7	129806441	rs4507710	C	T	520.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr7	129813738	rs3823482	T	C	4769.77	.	AC=1;AF=0.500;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	0/1:173,218:0.56:391
chr7	129815212	rs4731667	G	A	749.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:30,32:0.52:62
chr7	129843689	rs35299461	G	GA	627.73	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:40,39:0.49:79
chr7	129846823	.	TA	T	133.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.597;ClippingRankSum=0.000;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.318;QD=2.03;ReadPosRankSum=-0.520;SOR=0.889;set=HC	GT:AD:AF:DP	0/1:40,26:0.39:66
chr7	129847482	rs2727837	C	T	673.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr7	129910463	rs2291457	C	G	890.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:12,39:0.76:51
chr7	129910818	rs3816830	G	A	152.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:9,7:0.44:16
chr7	129913520	rs10257530	T	C	238.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.445;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=9.475;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=-0.614;QD=1.40;ReadPosRankSum=1.416;SOR=1.442;set=HC	GT:AD:AF:DP	0/1:122,48:0.28:170
chr7	129916390	rs59738706	A	AAC	1405.73	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:54,42:0.44:96
chr7	129916515	rs17590	T	C	13046.77	.	AC=2;AF=1.00;AN=2;DB;DP=498;set=Intersection	GT:AD:AF:DP	1/1:0,492:1.00:492
chr7	129938598	rs34587586	G	T	12328.77	.	AC=2;AF=1.00;AN=2;DB;DP=468;set=Intersection	GT:AD:AF:DP	1/1:0,462:1.00:462
chr7	129940561	rs12538292	G	A	1651.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr7	129948013	rs1038628	G	T	8375.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr7	129950740	rs2171492	G	T	5605.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr7	129950879	rs901800	G	A	650.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr7	129962360	rs1569133	A	G	13680.77	.	AC=2;AF=1.00;AN=2;DB;DP=528;set=Intersection	GT:AD:AF:DP	1/1:0,523:1.00:523
chr7	129987764	rs12532645	C	T	1464.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:54,63:0.54:117
chr7	129989878	rs7808823	T	C	2177.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:133,112:0.46:245
chr7	130002317	rs1544705	T	C	13188.77	.	AC=2;AF=1.00;AN=2;DB;DP=500;set=Intersection	GT:AD:AF:DP	1/1:0,497:1.00:497
chr7	130007901	rs2241272	A	T	3767.77	.	AC=1;AF=0.500;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	0/1:178,179:0.50:357
chr7	130007913	rs2241273	T	G	3149.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:151,147:0.49:298
chr7	130008159	rs2302823	A	G	1644.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:82,81:0.50:163
chr7	130020569	rs7790688	A	G	956.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:35,43:0.55:78
chr7	130021488	rs1126899	G	C	7902.77	.	AC=1;AF=0.500;AN=2;DB;DP=648;set=Intersection	GT:AD:AF:DP	0/1:281,352:0.56:633
chr7	130023179	rs6972781	A	G	2464.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:113,110:0.49:223
chr7	130023657	rs34925618	TG	T	12209.73	.	AC=1;AF=0.500;AN=2;DB;DP=937;set=Intersection	GT:AD:AF:DP	0/1:422,460:0.52:882
chr7	130024308	rs3043750	A	ACC	1490.73	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:55,44:0.44:99
chr7	130025895	rs2239606	A	G	771.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:34,33:0.49:67
chr7	130027633	rs10263705	A	G	2938.77	.	AC=1;AF=0.500;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	0/1:200,145:0.42:345
chr7	130080812	rs2287371	T	G	7060.77	.	AC=1;AF=0.500;AN=2;DB;DP=735;set=Intersection	GT:AD:AF:DP	0/1:384,343:0.47:727
chr7	130080951	rs10230435	C	T	4619.77	.	AC=1;AF=0.500;AN=2;DB;DP=485;set=Intersection	GT:AD:AF:DP	0/1:252,224:0.47:476
chr7	130080985	rs10230670	G	A	2960.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:147,134:0.48:281
chr7	130138155	rs6968284	A	G	16338.77	.	AC=2;AF=1.00;AN=2;DB;DP=599;set=Intersection	GT:AD:AF:DP	1/1:0,588:1.00:588
chr7	130139660	.	T	TA	287.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.051;ClippingRankSum=0.000;DP=154;ExcessHet=3.0103;FS=0.907;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.000;QD=2.06;ReadPosRankSum=0.106;SOR=0.556;set=HC	GT:AD:AF:DP	0/1:101,39:0.28:140
chr7	130139737	.	G	A	4418.77	.	AC=1;AF=0.500;AN=2;DP=488;set=Intersection	GT:AD:AF:DP	0/1:263,221:0.46:484
chr7	130140803	.	C	T	1428.77	.	AC=1;AF=0.500;AN=2;DP=117;set=Intersection	GT:AD:AF:DP	0/1:51,63:0.55:114
chr7	130147427	.	G	GT	314.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.414;ClippingRankSum=0.000;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.000;QD=3.09;ReadPosRankSum=0.959;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:70,32:0.31:102
chr7	130148562	rs58927323	T	TTCTTAGGAAGTG	4289.73	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr7	130148817	rs1047456	G	A	5354.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.864;ClippingRankSum=0.000;DB;DP=576;ExcessHet=3.0103;FS=1.091;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=1.080;QD=9.43;ReadPosRankSum=0.793;SOR=0.630;set=HC	GT:AD:AF:DP	0/1:305,263:0.46:568
chr7	130297119	rs34699820	GA	G	5609.73	.	AC=2;AF=1.00;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	1/1:38,314:0.89:352
chr7	130298550	rs4731696	C	T	4971.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr7	130347635	rs3843545	A	G	171.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:12,8:0.40:20
chr7	130354106	rs10232683	G	C	10211.77	.	AC=2;AF=1.00;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	1/1:0,367:1.00:367
chr7	130357763	rs76213788	T	C	1290.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:41,51:0.55:92
chr7	130365992	rs117574581	G	A	1658.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:76,75:0.50:151
chr7	130370267	rs17165066	T	G	500.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:42,23:0.35:65
chr7	130418720	rs111359117	A	C	1692.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr7	130418883	.	C	CGAGCGCCGTCCGAACGCGGCCGGCCGCGGGCGACGGAGTTCCCGGGAGCGTCCGTCCCGCAGCCTCG	1114.73	.	AC=2;AF=1.00;AN=2;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.87;SOR=5.136;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr7	131060277	rs3823557	G	A	2182.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:97,104:0.52:201
chr7	131155588	rs1733861	G	T	888.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:73,46:0.39:119
chr7	131155764	rs1684172	T	C	185.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:10,9:0.47:19
chr7	131190554	rs7799613	C	G	771.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:17,29:0.63:46
chr7	131191536	rs3212303	A	G	1598.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:54,67:0.55:121
chr7	131191554	rs56231781	TC	T	1293.73	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:44,45:0.51:89
chr7	131191609	rs11770771	A	G	547.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:23,22:0.49:45
chr7	131193863	rs56123664	G	C	1853.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:84,83:0.50:167
chr7	131193885	rs56165616	C	T	1335.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:68,63:0.48:131
chr7	131194392	rs3212295	G	A	1756.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:90,86:0.49:176
chr7	131195535	rs3847113	G	T	497.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:33,23:0.41:56
chr7	131195712	rs12670788	G	A	2695.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:128,122:0.49:250
chr7	131195959	rs3735035	C	T	4495.77	.	AC=1;AF=0.500;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	0/1:228,202:0.47:430
chr7	131196062	rs17744792	C	T	3404.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:144,154:0.52:298
chr7	131196206	rs73157523	T	C	1204.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:66,54:0.45:120
chr7	131241029	.	G	GGGCGAC	1500.73	.	AC=1;AF=0.500;AN=2;DP=97;set=Intersection	GT:AD:AF:DP	0/1:52,40:0.43:92
chr7	131815118	rs10954359	C	T	414.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:26,18:0.41:44
chr7	131815220	rs10954360	G	A	2342.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:116,112:0.49:228
chr7	131815310	rs2671103	A	G	2713.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:152,137:0.47:289
chr7	131815343	rs10954361	G	A	2524.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:139,118:0.46:257
chr7	131832627	rs1450882	A	G	3250.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr7	131849204	rs896167	T	A	2309.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr7	131859496	rs7808586	G	A	2120.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:112,101:0.47:213
chr7	131864591	rs3734989	T	C	2804.77	.	AC=1;AF=0.500;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:174,144:0.45:318
chr7	131866972	rs3734983	A	G	2674.77	.	AC=1;AF=0.500;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	0/1:204,143:0.41:347
chr7	131908468	rs2290232	T	C	1873.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:78,85:0.52:163
chr7	131908566	rs2290233	A	T	383.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:15,15:0.50:30
chr7	131915507	rs1868781	A	G	3227.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:142,146:0.51:288
chr7	131926112	rs3925378	C	G	515.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:23,20:0.47:43
chr7	132070054	rs741664	T	C	7985.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr7	132192231	rs156960	A	G	1698.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:115,87:0.43:202
chr7	132192295	rs156961	G	A	3562.77	.	AC=1;AF=0.500;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	0/1:198,177:0.47:375
chr7	132192949	rs156962	T	C	5545.77	.	AC=1;AF=0.500;AN=2;DB;DP=569;set=Intersection	GT:AD:AF:DP	0/1:293,271:0.48:564
chr7	132409606	rs594208	T	C	10221.77	.	AC=2;AF=1.00;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	1/1:0,360:1.00:360
chr7	132570358	rs12707059	T	C	167.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.717;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=1.653;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.45;ReadPosRankSum=0.543;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:16,10:0.38:26
chr7	132706981	rs17421819	G	A	307.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:16,14:0.47:30
chr7	132709293	rs13235276	C	T	283.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:14,12:0.46:26
chr7	132720701	rs78428660	C	A	4003.77	.	AC=1;AF=0.500;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	0/1:200,204:0.50:404
chr7	132766584	rs11769814	C	G	2807.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:189,141:0.43:330
chr7	132938039	rs10641096	C	CCCTT	1290.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr7	132990536	rs5887620	C	CT	917.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr7	133261358	rs56138358	G	T	4127.77	.	AC=1;AF=0.500;AN=2;DB;DP=534;set=Intersection	GT:AD:AF:DP	0/1:314,209:0.40:523
chr7	133580447	rs2042456	G	A	3526.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:143,167:0.54:310
chr7	133580545	rs2042455	A	G	649.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:41,29:0.41:70
chr7	133602538	rs73156934	C	T	1352.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:67,62:0.48:129
chr7	133682181	rs3735050	T	C	3704.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:163,175:0.52:338
chr7	133749164	rs6953296	G	A	7523.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr7	133821619	rs13246630	A	G	716.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr7	133868368	rs1222420	C	T	3568.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr7	133868507	rs1222419	C	T	13493.77	.	AC=2;AF=1.00;AN=2;DB;DP=511;set=Intersection	GT:AD:AF:DP	1/1:13,498:0.97:511
chr7	133881919	rs10611703	ATG	A	1767.73	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.62;QD=33.99;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr7	133886356	rs369598961	AT	A	166.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.559;ClippingRankSum=0.000;DB;DP=325;ExcessHet=3.0103;FS=3.326;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.63;ReadPosRankSum=0.084;SOR=0.428;set=HC	GT:AD:AF:DP	0/1:212,54:0.20:266
chr7	133933671	rs34245697	G	GT	311.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.791;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=3.522;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=2.469;QD=1.78;ReadPosRankSum=0.589;SOR=0.420;set=HC	GT:AD:AF:DP	0/1:130,45:0.26:175
chr7	134133620	rs17660462	T	G	2363.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:95,115:0.55:210
chr7	134134329	rs200157549	A	AC	967.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.757;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=2.050;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.82;ReadPosRankSum=1.041;SOR=0.462;set=HC	GT:AD:AF:DP	0/1:34,36:0.51:70
chr7	134134338	rs71531826	CA	C	198.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.865;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=1.058;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.45;ReadPosRankSum=-0.799;SOR=0.903;set=HC	GT:AD:AF:DP	0/1:53,28:0.35:81
chr7	134135751	rs2734649	C	T	14016.77	.	AC=2;AF=1.00;AN=2;DB;DP=534;set=Intersection	GT:AD:AF:DP	1/1:0,526:1.00:526
chr7	134136584	rs1732035	A	C	6684.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr7	134217729	rs3735041	A	G	3964.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr7	134223127	rs4732035	T	C	3002.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr7	134225788	rs4732036	C	T	6696.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr7	134225827	rs4728329	A	G	3568.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr7	134264233	rs72495463	C	CT	288.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.304;ClippingRankSum=0.000;DB;DP=357;ExcessHet=3.0103;FS=1.311;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=5.554;QD=1.03;ReadPosRankSum=-0.428;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:226,54:0.19:280
chr7	134552634	rs1452911	G	A	2186.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:108,103:0.49:211
chr7	134576441	rs6953822	T	C	370.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.427;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.89;ReadPosRankSum=0.732;SOR=0.541;set=HC	GT:AD:AF:DP	0/1:27,20:0.43:47
chr7	134576547	rs12531510	A	G	182.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:4,10:0.71:14
chr7	134612759	rs11438725	G	GT	3499.73	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr7	134635040	rs7797991	C	T	656.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:21,28:0.57:49
chr7	134643158	rs5887717	AT	A	90.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.445;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=7.715;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.13;ReadPosRankSum=-3.607;SOR=3.180;set=HC	GT:AD:AF:DP	0/1:14,15:0.52:29
chr7	134673958	rs12671813	T	C	238.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:11,12:0.52:23
chr7	134678463	rs12540686	T	C	2745.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:84,118:0.58:202
chr7	134678523	rs2252826	C	T	2215.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr7	134694939	rs6958457	T	C	611.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr7	134701856	rs4236655	G	C	19201.77	.	AC=2;AF=1.00;AN=2;DB;DP=712;set=Intersection	GT:AD:AF:DP	1/1:0,706:1.00:706
chr7	134719551	rs9656447	C	G	10504.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	1/1:0,373:1.00:373
chr7	134730151	rs2348054	G	C	2303.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:1,78:0.99:79
chr7	134730441	rs2348055	A	G	6186.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr7	134735830	rs56164604	A	G	1274.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:48,62:0.56:110
chr7	134744060	rs146909058	CA	C	2556.73	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr7	134765148	rs10215144	G	A	1207.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr7	134813853	rs2348282	G	A	8258.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr7	134833056	rs3735002	C	G	3412.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr7	134849213	rs3800592	G	A	7983.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr7	134849280	rs292501	T	A	17005.77	.	AC=2;AF=1.00;AN=2;DB;DP=651;set=Intersection	GT:AD:AF:DP	1/1:0,639:1.00:639
chr7	134849577	rs2288237	A	C	10215.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	1/1:2,378:0.99:380
chr7	134852399	rs2288238	G	A	1478.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr7	134852432	rs292505	C	T	2709.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr7	134853844	rs9649052	C	A	975.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr7	134871775	rs292557	C	T	2106.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:125,104:0.45:229
chr7	134872003	rs292558	C	G	547.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:29,22:0.43:51
chr7	134873355	rs292564	G	A	3810.77	.	AC=1;AF=0.500;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:145,170:0.54:315
chr7	134877935	rs292573	A	G	1498.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:41,57:0.58:98
chr7	134878237	rs2278128	G	C	2331.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:67,104:0.61:171
chr7	134879830	rs292575	G	A	978.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:50,52:0.51:102
chr7	134880884	rs292578	G	C	4188.77	.	AC=1;AF=0.500;AN=2;DB;DP=496;set=Intersection	GT:AD:AF:DP	0/1:272,212:0.44:484
chr7	134882680	rs292582	A	G	9151.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:0,332:1.00:332
chr7	134882693	rs292583	T	C	10010.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:0,360:1.00:360
chr7	134889141	rs292592	G	A	3124.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:176,148:0.46:324
chr7	134889264	rs17233604	T	C	913.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:55,46:0.46:101
chr7	134890855	rs292593	T	G	1166.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:47,56:0.54:103
chr7	134891961	rs2278130	G	A	5171.77	.	AC=1;AF=0.500;AN=2;DB;DP=508;set=Intersection	GT:AD:AF:DP	0/1:251,246:0.49:497
chr7	134895532	rs292601	T	C	7396.77	.	AC=1;AF=0.500;AN=2;DB;DP=616;set=Intersection	GT:AD:AF:DP	0/1:266,344:0.56:610
chr7	134896383	rs292602	T	C	1384.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr7	134925241	rs34330846	C	CA	7299.73	.	AC=1;AF=0.500;AN=2;DB;DP=496;set=Intersection	GT:AD:AF:DP	0/1:87,389:0.82:476
chr7	134925411	rs7805859	G	A	18751.77	.	AC=2;AF=1.00;AN=2;DB;DP=706;set=Intersection	GT:AD:AF:DP	1/1:0,696:1.00:696
chr7	134928033	rs62481958	G	T	5244.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr7	134930169	rs113633449	A	AGAG	4621.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.643;ClippingRankSum=0.000;DB;DP=261;ExcessHet=3.0103;FS=6.314;MLEAC=2;MLEAF=1.000;MQ=61.23;MQRankSum=-0.022;QD=25.26;ReadPosRankSum=0.860;SOR=2.081;set=HC	GT:AD:AF:DP	1/1:12,171:0.93:183
chr7	134939767	rs17168332	G	T	1199.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:76,53:0.41:129
chr7	134943057	rs11979450	C	T	440.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:23,20:0.47:43
chr7	134943087	rs11979453	C	G	721.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:46,37:0.45:83
chr7	134943116	rs11979480	C	G	1424.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:72,67:0.48:139
chr7	134943328	rs58802664	C	T	1105.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:43,50:0.54:93
chr7	134962043	rs10239950	C	G	3408.77	.	AC=1;AF=0.500;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	0/1:177,169:0.49:346
chr7	135047703	rs6969632	T	C	3067.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.15;SOR=0.711;set=HC	GT:AD:AF:DP	1/1:0,113:1.00:113
chr7	135048033	rs2059367	G	C	237.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:8,11:0.58:19
chr7	135048804	rs3812265	C	T	3655.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:142,175:0.55:317
chr7	135082751	rs3812281	T	C	216.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:16,11:0.41:27
chr7	135083052	rs376120582	G	GA	93.73	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:14,10:0.42:24
chr7	135095270	rs2696877	A	G	1688.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr7	135099044	.	TA	T	79.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.167;ClippingRankSum=0.000;DP=108;ExcessHet=3.0103;FS=0.947;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.78;ReadPosRankSum=1.190;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:80,22:0.22:102
chr7	135255796	rs199694654	AT	A	1898.73	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:82,66:0.45:148
chr7	135255826	rs115498909	G	A	2439.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;MQ=60.12;set=Intersection	GT:AD:AF:DP	0/1:142,117:0.45:259
chr7	135256027	.	A	ATT	1650.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.035;ClippingRankSum=0.000;DP=160;ExcessHet=3.0103;FS=19.552;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.48;ReadPosRankSum=-0.593;SOR=0.038;set=HC	GT:AD:AF:DP	0/1:59,55:0.48:114
chr7	135256046	rs76038385	C	T	1990.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.506;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=11.668;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.96;ReadPosRankSum=-0.718;SOR=0.126;set=HC	GT:AD:AF:DP	0/1:52,53:0.50:105
chr7	135256054	rs141765692	G	C	1796.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.258;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=8.783;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.89;ReadPosRankSum=-0.078;SOR=0.144;set=HC	GT:AD:AF:DP	0/1:45,41:0.48:86
chr7	135258678	rs76315574	C	A	499.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:19,22:0.54:41
chr7	135261689	rs73725137	G	A	1254.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:66,57:0.46:123
chr7	135263735	rs73725145	A	G	2331.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:91,102:0.53:193
chr7	135272535	rs35616673	C	CT	1517.73	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:115,92:0.44:207
chr7	135281909	rs75191469	C	T	901.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:26,35:0.57:61
chr7	135285788	rs4296989	T	C	759.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr7	135287860	rs11300648	CT	C	203.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.680;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.55;ReadPosRankSum=-1.549;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:1,13:0.93:14
chr7	135292098	rs61734151	G	A	2383.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:75,113:0.60:188
chr7	135292279	rs79437265	A	G	194.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:14,9:0.39:23
chr7	135298858	rs73725194	G	A	2718.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:94,121:0.56:215
chr7	135304273	rs7810767	G	C	6906.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr7	135304693	rs140432201	GA	G	428.73	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:28,30:0.52:58
chr7	135311120	rs7810260	G	A	2136.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:91,101:0.53:192
chr7	135311167	rs10234309	G	A	1019.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:47,46:0.49:93
chr7	135315054	rs10690915	C	CCT	2720.73	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:97,74:0.43:171
chr7	135322853	rs7799891	T	C	1449.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:98,76:0.44:174
chr7	135328168	rs138585928	A	ACTGGT	898.73	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:29,24:0.45:53
chr7	135329690	rs12540688	T	C	5225.77	.	AC=1;AF=0.500;AN=2;DB;DP=519;set=Intersection	GT:AD:AF:DP	0/1:263,253:0.49:516
chr7	135330410	rs148753323	GT	G	1237.73	.	AC=1;AF=0.500;AN=2;DB;DP=177;MQ=60.06;set=Intersection	GT:AD:AF:DP	0/1:70,78:0.53:148
chr7	135344821	rs75906671	GGAA	G	3531.73	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:79,92:0.54:171
chr7	135344862	rs116609292	T	G	2612.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:105,128:0.55:233
chr7	135344996	rs75926988	T	C	1440.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:73,67:0.48:140
chr7	135345426	rs12534205	T	C	847.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:88,48:0.35:136
chr7	135357476	rs3110823	A	C	2093.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:72,80:0.53:152
chr7	135375909	rs10659389	C	CAA	1575.73	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:133,120:0.47:253
chr7	135386297	rs76462774	GT	G	2236.73	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:65,67:0.51:132
chr7	135387473	rs3112345	A	G	1821.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:73,84:0.54:157
chr7	135387495	rs3112346	A	G	2017.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:91,94:0.51:185
chr7	135387656	rs3112347	G	A	1853.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:93,86:0.48:179
chr7	135390437	rs73160728	G	A	1458.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:67,69:0.51:136
chr7	135392876	rs3110800	T	C	5417.77	.	AC=1;AF=0.500;AN=2;DB;DP=593;set=Intersection	GT:AD:AF:DP	0/1:321,262:0.45:583
chr7	136588109	rs6963819	G	A	877.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:40,42:0.51:82
chr7	136921062	rs322295	C	T	1740.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:94,84:0.47:178
chr7	136939582	rs1162122	G	T	8149.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr7	137080244	rs7792568	T	G	4193.77	.	AC=1;AF=0.500;AN=2;DB;DP=465;set=Intersection	GT:AD:AF:DP	0/1:254,198:0.44:452
chr7	137097086	rs1731959	G	C	2397.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr7	137154572	rs2293546	T	C	1467.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr7	137170049	rs28434741	A	G	1871.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.094;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.14;ReadPosRankSum=1.481;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:81,87:0.52:168
chr7	137172245	rs7802865	A	T	1233.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:44,47:0.52:91
chr7	137172508	.	C	T	962.77	.	AC=1;AF=0.500;AN=2;DP=107;set=Intersection	GT:AD:AF:DP	0/1:62,44:0.42:106
chr7	137304765	.	GCACA	G	220.82	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.465;ClippingRankSum=-0.000;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=31.55;ReadPosRankSum=1.465;SOR=0.527;set=HC	GT:AD:AF:DP	1/1:1,6:0.86:7
chr7	137531147	rs71815938	GT	G	24385.73	.	AC=2;AF=1.00;AN=2;DB;DP=631;set=Intersection	GT:AD:AF:DP	1/1:0,622:1.00:622
chr7	137586329	.	G	GA	193.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.581;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;FS=3.471;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.54;ReadPosRankSum=-0.353;SOR=0.199;set=HC	GT:AD:AF:DP	0/1:20,15:0.43:35
chr7	137590369	rs273968	G	A	2244.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr7	137600690	rs273957	C	T	3260.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr7	137607183	.	CGT	C	1017	.	AC=2;AF=1.00;AN=2;BRF=0.31;FR=1.0000;HP=1;HapScore=1;MGOF=68;MMLQ=26;MQ=56.65;NF=20;NR=1;PP=1017;QD=50.4761904762;SC=TATATATATACGTATATATAT;SbPval=0.84;Source=Platypus;TC=23;TCF=21;TCR=2;TR=21;WE=137607195;WS=137607182;set=Platypus	GT:AD:AF:DP	1/1:2,21:0.91:23
chr7	137607187	.	T	C	474	.	AC=1;AF=0.500;AN=2;BRF=0.31;FR=0.5173;HP=2;HapScore=1;MGOF=68;MMLQ=27;MQ=57.15;NF=21;NR=2;PP=474;QD=22.1204875021;SC=TATATACGTATATATATATAT;SbPval=0.64;Source=Platypus;TC=32;TCF=29;TCR=3;TR=23;WE=137607195;WS=137607182;set=Platypus	GT:AD:AF:DP	1/0:9,23:0.72:32
chr7	137607217	.	C	T	1330	.	AC=2;AF=1.00;AN=2;BRF=0.44;FR=1.0000;HP=2;HapScore=1;MGOF=27;MMLQ=26;MQ=59.03;NF=41;NR=11;PP=1330;QD=26.2456002413;SC=TATATATATACACACATATAT;SbPval=0.59;Source=Platypus;TC=59;TCF=46;TCR=13;TR=52;WE=137607241;WS=137607205;set=Platypus	GT:AD:AF:DP	1/1:7,52:0.88:59
chr7	137607233	.	C	T	1574	.	AC=1;AF=0.500;AN=2;BRF=0.44;FR=0.6069;HP=2;HapScore=1;MGOF=27;MMLQ=24;MQ=59.32;NF=50;NR=16;PP=1574;QD=24.3753214022;SC=TATATATATACACACACACAC;SbPval=0.6;Source=Platypus;TC=78;TCF=58;TCR=20;TR=66;WE=137607241;WS=137607205;set=Platypus	GT:AD:AF:DP	0/1:12,66:0.85:78
chr7	137612913	rs66593747	CTGG	C	559.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:25,16:0.39:41
chr7	137641123	rs274003	C	T	426.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:21,19:0.47:40
chr7	137642759	rs274004	T	A	410.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:8,15:0.65:23
chr7	137773291	rs2120846	T	G	11171.77	.	AC=2;AF=1.00;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	1/1:1,409:1.00:410
chr7	137773563	rs2166188	T	G	1231.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr7	137773587	rs35802315	C	CGTGT	951	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:2,23:0.92:25
chr7	137776411	rs202194493	C	CA	1104.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.780;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=5.067;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=0.904;QD=12.01;ReadPosRankSum=-0.465;SOR=0.308;set=HC	GT:AD:AF:DP	0/1:22,70:0.76:92
chr7	137776576	.	C	T	2308.77	.	AC=1;AF=0.500;AN=2;DP=208;set=Intersection	GT:AD:AF:DP	0/1:95,109:0.53:204
chr7	137782593	rs35402657	CT	C	251.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.347;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.80;ReadPosRankSum=1.775;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:12,25:0.68:37
chr7	137798593	rs2306847	A	T	7054.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr7	137801413	rs1872929	A	C	4714.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr7	137801444	rs1872930	C	T	4611.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr7	138145778	rs112619223	C	T	1485.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:61,65:0.52:126
chr7	138188932	rs10488642	A	G	1252.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:33,45:0.58:78
chr7	138189189	rs368969729	GCTCTT	G	951.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.393;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=4.020;MLEAC=1;MLEAF=0.500;MQ=61.69;MQRankSum=5.835;QD=9.52;ReadPosRankSum=-0.103;SOR=1.191;set=HC	GT:AD:AF:DP	0/1:61,39:0.39:100
chr7	138200117	rs3757381	A	T	3241.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:1,113:0.99:114
chr7	138229990	rs6959574	G	A	1579.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr7	138261319	rs59147816	TAAC	T	922.73	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:31,27:0.47:58
chr7	138268563	rs3213902	A	G	441.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:12,17:0.59:29
chr7	138279228	rs1439793	A	T	456.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:34,24:0.41:58
chr7	138281355	rs1659832	A	G	526.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:17,22:0.56:39
chr7	138281906	rs1659831	T	C	2939.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:157,138:0.47:295
chr7	138310629	rs1673162	G	A	16577.77	.	AC=2;AF=1.00;AN=2;DB;DP=637;set=Intersection	GT:AD:AF:DP	1/1:2,622:1.00:624
chr7	138312122	rs2305816	A	C	3488.77	.	AC=1;AF=0.500;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	0/1:180,165:0.48:345
chr7	138312216	rs2305817	A	G	3508.77	.	AC=1;AF=0.500;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	0/1:220,178:0.45:398
chr7	138313189	rs4728437	C	T	940.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:48,41:0.46:89
chr7	138314780	rs1659808	C	A	3537.77	.	AC=1;AF=0.500;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	0/1:191,165:0.46:356
chr7	138329658	rs28367131	G	A	2539.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:107,115:0.52:222
chr7	138333933	rs58569190	GA	G	881.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.049;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=6.454;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.397;QD=6.73;ReadPosRankSum=-0.311;SOR=1.365;set=HC	GT:AD:AF:DP	0/1:68,63:0.48:131
chr7	138341367	rs78462984	T	C	304.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:17,14:0.45:31
chr7	138356659	rs5887893	AG	A	1672.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.02;SOR=3.145;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr7	138356662	rs5011821	G	A	1763.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.41;SOR=3.145;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr7	138356663	rs5011820	G	C	1813.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.51;SOR=2.891;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr7	138356664	rs5887894	C	CA	1804.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.12;SOR=2.948;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr7	138356722	rs10234595	C	T	899.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.921;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=1.933;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.84;ReadPosRankSum=0.032;SOR=1.008;set=HC	GT:AD:AF:DP	0/1:42,41:0.49:83
chr7	138356730	rs202122915	T	TG	4283.73	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.07;SOR=1.688;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr7	138356732	.	CTG	GCT	688	.	AC=2;AF=1.00;AN=2;BRF=0.37;FR=0.5000;HP=1;HapScore=2;MGOF=31;MMLQ=28;MQ=60.0;NF=43;NR=23;PP=688;QD=11.3858768919;SC=CCCTCAGTTGCTGTGTTCACG;SbPval=0.48;Source=Platypus;TC=81;TCF=54;TCR=27;TR=66;WE=138356742;WS=138356712;set=Platypus	GT:AD:AF:DP	1/1:15,66:0.81:81
chr7	138356733	rs5887896	TG	T	4259.73	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.32;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr7	138363767	rs10250576	A	G	1574.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:88,77:0.47:165
chr7	138417596	rs148944306	T	TA	601.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.795;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=0.000;QD=9.87;ReadPosRankSum=1.215;SOR=0.963;set=HC	GT:AD:AF:DP	0/1:17,44:0.72:61
chr7	138417718	rs3807154	A	G	8248.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr7	138417936	.	CT	C	165.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.591;ClippingRankSum=0.000;DP=99;ExcessHet=3.0103;FS=1.790;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.24;ReadPosRankSum=-0.363;SOR=1.044;set=HC	GT:AD:AF:DP	0/1:51,23:0.31:74
chr7	138418910	rs1026435	G	A	18059.77	.	AC=2;AF=1.00;AN=2;DB;DP=687;set=Intersection	GT:AD:AF:DP	1/1:0,681:1.00:681
chr7	138419085	rs1037692	A	G	2584.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr7	138429823	rs55843107	C	T	511.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:32,23:0.42:55
chr7	138429851	rs6467797	T	C	1242.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:31,52:0.63:83
chr7	138434066	rs11324444	GA	G	402.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.023;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=8.268;MLEAC=1;MLEAF=0.500;MQ=60.40;MQRankSum=1.722;QD=6.71;ReadPosRankSum=-0.330;SOR=0.477;set=HC	GT:AD:AF:DP	0/1:22,38:0.63:60
chr7	138437714	rs416119	C	T	877.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:30,36:0.55:66
chr7	138440607	rs296911	G	A	10255.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	1/1:0,386:1.00:386
chr7	138441083	rs11764089	A	C	1767.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:84,80:0.49:164
chr7	138441124	rs296910	A	G	8255.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:2,317:0.99:319
chr7	138444432	rs13230648	C	T	1400.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:71,65:0.48:136
chr7	138453892	rs200396435	GAAA	G	1506.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.511;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=0.904;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.826;QD=12.25;ReadPosRankSum=-0.231;SOR=0.830;set=HC	GT:AD:AF:DP	0/1:63,60:0.49:123
chr7	138455988	rs10258719	A	G	3262.77	.	AC=1;AF=0.500;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	0/1:200,166:0.45:366
chr7	138485954	rs6945259	G	T	2149.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:83,88:0.51:171
chr7	138486096	rs61729750	G	C	7610.77	.	AC=1;AF=0.500;AN=2;DB;DP=721;set=Intersection	GT:AD:AF:DP	0/1:349,366:0.51:715
chr7	138555816	rs35334186	GC	G	724.73	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:35,31:0.47:66
chr7	138583840	rs7802841	C	A	3096.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:161,147:0.48:308
chr7	138732274	rs3087999	C	G	3357.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:158,149:0.49:307
chr7	138732497	rs3735007	G	A	6577.77	.	AC=1;AF=0.500;AN=2;DB;DP=661;set=Intersection	GT:AD:AF:DP	0/1:335,317:0.49:652
chr7	138738204	rs11977775	G	A	4335.77	.	AC=1;AF=0.500;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	0/1:237,214:0.47:451
chr7	138739816	rs10261597	C	G	807.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:31,37:0.54:68
chr7	138740186	rs2297237	A	G	1482.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.252;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.04;ReadPosRankSum=-1.651;SOR=0.535;set=HC	GT:AD:AF:DP	0/1:42,45:0.52:87
chr7	138740195	rs2297238	T	G	1289.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.747;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=1.288;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.17;ReadPosRankSum=0.544;SOR=1.091;set=HC	GT:AD:AF:DP	0/1:39,32:0.45:71
chr7	138740224	rs2297239	T	C	597.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:19,21:0.53:40
chr7	138740240	rs2297240	T	C	288.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:14,11:0.44:25
chr7	138768472	rs55906316	CA	C	179.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.748;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=2.343;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=1.947;QD=1.93;ReadPosRankSum=0.287;SOR=1.037;set=HC	GT:AD:AF:DP	0/1:61,32:0.34:93
chr7	138768839	rs6943128	A	G	419.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:26,20:0.43:46
chr7	138793677	rs1839606	G	C	1508.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:82,66:0.45:148
chr7	138978855	.	C	A	987.77	.	AC=1;AF=0.500;AN=2;DP=71;set=Intersection	GT:AD:AF:DP	0/1:28,42:0.60:70
chr7	139026152	rs10265	T	G	5238.77	.	AC=1;AF=0.500;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	0/1:205,240:0.54:445
chr7	139077240	rs4732370	C	A	884.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:91,49:0.35:140
chr7	139077317	rs4732371	T	A	391.73	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:47,26:0.36:73
chr7	139097282	rs11409457	A	AC	980.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.635;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.96;ReadPosRankSum=-2.002;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:73,68:0.48:141
chr7	139102490	rs3778931	A	G	1549.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:89,71:0.44:160
chr7	139138487	rs199674782	G	A	2936.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:148,146:0.50:294
chr7	139138551	rs10954649	C	T	944.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:53,41:0.44:94
chr7	139138871	rs11763327	T	G	1741.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:59,82:0.58:141
chr7	139224992	rs34334721	G	A	583.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:33,24:0.42:57
chr7	139605869	rs35857550	CT	C	651.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.269;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.34;ReadPosRankSum=2.412;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:62,60:0.49:122
chr7	139653196	rs5768	A	C	13869.77	.	AC=2;AF=1.00;AN=2;DB;DP=526;set=Intersection	GT:AD:AF:DP	1/1:0,517:1.00:517
chr7	139746599	.	AGT	A	1396.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.107;ClippingRankSum=0.000;DP=137;ExcessHet=3.0103;FS=2.625;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=1.049;QD=11.36;ReadPosRankSum=0.124;SOR=1.033;set=HC	GT:AD:AF:DP	0/1:53,70:0.57:123
chr7	139762273	rs737321	A	G	7143.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.21;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,158:1.00:158
chr7	139762282	rs6945590	A	G	7637.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.43;SOR=1.172;set=HC	GT:AD:AF:DP	1/1:0,180:1.00:180
chr7	140037053	rs11331602	CT	C	1318.73	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:10,87:0.90:97
chr7	140048262	rs66700092	CT	C	139.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.952;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=7.909;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.33;ReadPosRankSum=2.872;SOR=0.078;set=HC	GT:AD:AF:DP	0/1:24,18:0.43:42
chr7	140048690	rs60025250	G	A	174.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:10,8:0.44:18
chr7	140051063	rs12703774	C	T	2421.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:105,111:0.51:216
chr7	140051091	rs12703775	G	A	3702.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:152,169:0.53:321
chr7	140051790	rs73472791	T	C	1979.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:84,92:0.52:176
chr7	140051848	rs12665885	C	T	2064.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:90,100:0.53:190
chr7	140055425	rs143846511	CAG	C	122.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.882;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=9.420;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=2.559;QD=1.46;ReadPosRankSum=-1.915;SOR=0.097;set=HC	GT:AD:AF:DP	0/1:70,14:0.17:84
chr7	140069361	rs4448174	G	C	7434.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr7	140080087	rs62490396	C	G	3734.77	.	AC=1;AF=0.500;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	0/1:217,180:0.45:397
chr7	140082363	rs6968618	G	A	8598.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr7	140110677	rs2971690	G	A	2633.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:130,124:0.49:254
chr7	140111486	rs2948389	A	T	532.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:4,21:0.84:25
chr7	140111509	rs2971688	G	C	715.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:12,29:0.71:41
chr7	140155778	rs2363826	G	C	2593.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:137,128:0.48:265
chr7	140156723	rs78256678	G	A	1966.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:105,93:0.47:198
chr7	140159721	rs10243155	T	C	1333.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:57,57:0.50:114
chr7	140159798	rs11763850	A	G	357.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:27,16:0.37:43
chr7	140173010	rs58539466	C	CA	740.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.116;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=0.651;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=1.913;QD=4.78;ReadPosRankSum=-0.125;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:84,71:0.46:155
chr7	140173102	rs17161569	T	G	3613.77	.	AC=1;AF=0.500;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	0/1:228,176:0.44:404
chr7	140174292	rs10709936	CA	C	215.73	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:21,17:0.45:38
chr7	140175141	rs139052285	AAAAC	A	3095.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.472;ClippingRankSum=0.000;DB;DP=265;ExcessHet=3.0103;FS=2.305;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.17;ReadPosRankSum=1.709;SOR=0.805;set=HC	GT:AD:AF:DP	0/1:149,86:0.37:235
chr7	140218464	rs6852	C	A	2188.77	.	AC=1;AF=0.500;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:203,115:0.36:318
chr7	140225750	rs2252397	G	A	822.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:26,34:0.57:60
chr7	140244560	rs2293177	C	T	1701.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:63,76:0.55:139
chr7	140244627	rs2293176	G	A	764.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:25,31:0.55:56
chr7	140255623	rs4342501	T	C	2233.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:98,103:0.51:201
chr7	140255657	rs11763409	C	T	1296.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:64,61:0.49:125
chr7	140257841	rs10252031	A	G	2151.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr7	140257907	rs12704002	C	T	2155.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:105,100:0.49:205
chr7	140258000	rs12704003	T	C	5508.77	.	AC=1;AF=0.500;AN=2;DB;DP=648;set=Intersection	GT:AD:AF:DP	0/1:357,285:0.44:642
chr7	140268731	.	C	CT	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.846;ClippingRankSum=0.000;DP=152;ExcessHet=3.0103;FS=1.027;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.31;ReadPosRankSum=0.151;SOR=0.493;set=HC	GT:AD:AF:DP	0/1:98,19:0.16:117
chr7	140269625	rs587373	C	T	751.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:36,37:0.51:73
chr7	140301731	rs269243	G	T	10885.77	.	AC=1;AF=0.500;AN=2;DB;DP=1033;set=Intersection	GT:AD:AF:DP	0/1:508,521:0.51:1029
chr7	140395554	rs373239942	CT	C	262.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.006;ClippingRankSum=0.000;DB;DP=270;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.572;QD=1.04;ReadPosRankSum=-0.783;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:189,64:0.25:253
chr7	140396472	rs57717083	C	CG	2131.73	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr7	140426257	rs3829814	A	G	8221.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chr7	140434574	.	C	CA	598.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.105;ClippingRankSum=0.000;DP=140;ExcessHet=3.0103;FS=3.175;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.73;ReadPosRankSum=-0.034;SOR=1.106;set=HC	GT:AD:AF:DP	0/1:46,43:0.48:89
chr7	140434597	rs60814637	G	GA	824.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.269;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=5.384;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=21.70;ReadPosRankSum=1.644;SOR=1.906;set=HC	GT:AD:AF:DP	1/1:1,37:0.97:38
chr7	140508151	.	CAAAA	C	753.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.851;ClippingRankSum=0.000;DP=239;ExcessHet=3.0103;FS=5.464;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=0.000;QD=6.73;ReadPosRankSum=-1.034;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:79,33:0.29:112
chr7	140508253	.	A	AT	69.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.987;ClippingRankSum=0.000;DP=94;ExcessHet=3.0103;FS=6.752;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=-0.713;QD=0.98;ReadPosRankSum=0.821;SOR=0.017;set=HC	GT:AD:AF:DP	0/1:56,15:0.21:71
chr7	140702199	rs10654746	C	CTT	1117.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.408;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=1.102;MLEAC=1;MLEAF=0.500;MQ=61.12;MQRankSum=2.693;QD=12.42;ReadPosRankSum=-1.397;SOR=0.910;set=HC	GT:AD:AF:DP	0/1:20,70:0.78:90
chr7	140774467	rs477223	C	G	5822.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr7	141137460	rs13233459	C	T	2399.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:88,112:0.56:200
chr7	141137554	rs1727491	A	G	4487.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.088;ClippingRankSum=0.000;DB;DP=223;ExcessHet=3.0103;FS=1.034;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.22;ReadPosRankSum=0.620;SOR=0.800;set=HC	GT:AD:AF:DP	0/1:107,115:0.52:222
chr7	141137554	.	ACG	GCA	2707	.	AC=1;AF=0.500;AN=2;BRF=0.47;FR=0.5000;HP=1;HapScore=1;MGOF=7;MMLQ=28;MQ=60.0;NF=31;NR=40;PP=2707;QD=20;SC=AGGTAAGGCTACGGGCTCGGC;SbPval=0.64;Source=Platypus;TC=140;TCF=65;TCR=75;TR=71;WE=141137564;WS=141137544;set=Platypus	GT:AD:AF:DP	0/1:69,71:0.51:140
chr7	141137556	rs1619668	G	A	4487.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.951;ClippingRankSum=0.000;DB;DP=223;ExcessHet=3.0103;FS=1.034;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.22;ReadPosRankSum=0.670;SOR=0.800;set=HC	GT:AD:AF:DP	0/1:107,115:0.52:222
chr7	141321395	rs150053901	GGA	G	117.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.696;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=3.410;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=2.261;QD=2.22;ReadPosRankSum=0.272;SOR=0.579;set=HC	GT:AD:AF:DP	0/1:44,9:0.17:53
chr7	141362431	rs6949729	T	C	2155.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr7	141362693	rs2269984	A	T	2136.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:107,105:0.50:212
chr7	141374030	.	A	AAC	242.73	.	AC=1;AF=0.500;AN=2;DP=56;set=Intersection	GT:AD:AF:DP	0/1:23,13:0.36:36
chr7	141386264	rs35707772	AC	A	2297.73	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:55,67:0.55:122
chr7	141420707	rs6971275	T	C	2438.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:152,120:0.44:272
chr7	141420768	rs6967301	A	G	3256.77	.	AC=1;AF=0.500;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	0/1:220,171:0.44:391
chr7	141429224	rs35399772	TC	T	1132.73	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:45,46:0.51:91
chr7	141429515	rs6962507	G	A	1200.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:45,53:0.54:98
chr7	141442213	rs2301924	G	A	186.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:14,11:0.44:25
chr7	141463914	rs765007	T	C	1393.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:45,54:0.55:99
chr7	141464765	rs2270009	C	T	4690.77	.	AC=1;AF=0.500;AN=2;DB;DP=518;set=Intersection	GT:AD:AF:DP	0/1:278,237:0.46:515
chr7	141478308	rs2233998	T	C	739.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:37,31:0.46:68
chr7	141478574	rs2234001	G	C	5004.77	.	AC=1;AF=0.500;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	0/1:204,226:0.53:430
chr7	141478800	rs2234002	G	A	6426.77	.	AC=1;AF=0.500;AN=2;DB;DP=562;set=Intersection	GT:AD:AF:DP	0/1:252,304:0.55:556
chr7	141490107	rs2234012	A	G	226.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:15,12:0.44:27
chr7	141490238	rs2227264	G	T	1948.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:117,98:0.46:215
chr7	141536351	rs370442337	CAG	C	729.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.338;ClippingRankSum=0.000;DB;DP=319;ExcessHet=3.0103;FS=3.409;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=2.020;QD=3.41;ReadPosRankSum=-0.300;SOR=0.441;set=HC	GT:AD:AF:DP	0/1:167,47:0.22:214
chr7	141537735	rs12669721	T	G	1548.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:80,71:0.47:151
chr7	141537942	rs145160047	T	TCAA	6860.73	.	AC=1;AF=0.500;AN=2;DB;DP=444;set=Intersection	GT:AD:AF:DP	0/1:226,181:0.44:407
chr7	141537968	rs11765575	A	G	4215.77	.	AC=1;AF=0.500;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	0/1:198,199:0.50:397
chr7	141538812	rs36029840	TA	T	431.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.266;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=0.730;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.94;ReadPosRankSum=2.565;SOR=0.618;set=HC	GT:AD:AF:DP	0/1:94,53:0.36:147
chr7	141538865	rs12703412	A	G	1393.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:60,63:0.51:123
chr7	141635534	rs200523567	T	TC	1317.73	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:71,63:0.47:134
chr7	141635538	rs5888023	C	CA	1641.73	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:69,73:0.51:142
chr7	141672604	rs10246939	T	C	5218.77	.	AC=1;AF=0.500;AN=2;DB;DP=493;set=Intersection	GT:AD:AF:DP	0/1:233,253:0.52:486
chr7	141672705	rs1726866	G	A	4950.77	.	AC=1;AF=0.500;AN=2;DB;DP=470;set=Intersection	GT:AD:AF:DP	0/1:225,240:0.52:465
chr7	141673345	rs713598	C	G	6322.77	.	AC=1;AF=0.500;AN=2;DB;DP=518;set=Intersection	GT:AD:AF:DP	0/1:231,277:0.55:508
chr7	141705515	rs1285964	A	T	2552.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:1,96:0.99:97
chr7	141705540	rs1285965	A	C	2204.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:2,84:0.98:86
chr7	141708625	rs1465093	A	C	1861.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr7	141720643	rs1852508	T	C	4292.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:2,150:0.99:152
chr7	141727679	rs34441915	AT	A	208.79	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:1,13:0.93:14
chr7	141730618	rs111279755	CTG	C	1557.73	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:40,58:0.59:98
chr7	141731340	rs4374898	G	A	604.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:12,23:0.66:35
chr7	141731695	rs76357138	A	T	787.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.446;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=3.080;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.50;ReadPosRankSum=0.320;SOR=2.360;set=HC	GT:AD:AF:DP	0/1:32,31:0.49:63
chr7	141733994	rs10693852	T	TTG	2186.73	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:51,59:0.54:110
chr7	141736880	rs117567174	T	C	1215.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:58,50:0.46:108
chr7	141738504	rs8180874	C	T	2158.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:114,102:0.47:216
chr7	141740077	rs2960753	G	T	1539.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:67,65:0.49:132
chr7	141740409	rs10215116	A	G	487.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:35,25:0.42:60
chr7	141747658	rs2960746	A	G	16394.77	.	AC=2;AF=1.00;AN=2;DB;DP=608;set=Intersection	GT:AD:AF:DP	1/1:0,601:1.00:601
chr7	141750316	rs6948116	C	T	181.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:20,10:0.33:30
chr7	141750472	rs62477572	A	G	1937.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:136,102:0.43:238
chr7	141752006	rs71166554	AT	A	920.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.550;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=0.650;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.22;ReadPosRankSum=0.993;SOR=0.594;set=HC	GT:AD:AF:DP	0/1:81,67:0.45:148
chr7	141752213	rs2961085	C	A	1468.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;MQ=59.95;set=Intersection	GT:AD:AF:DP	0/1:37,56:0.60:93
chr7	141755795	rs2961081	C	T	2412.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:104,97:0.48:201
chr7	141755987	rs2961080	G	T	4101.77	.	AC=1;AF=0.500;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	0/1:214,197:0.48:411
chr7	141759274	rs2960758	T	C	884.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:143,50:0.26:193
chr7	141759340	rs2961074	T	C	1864.77	.	AC=1;AF=0.500;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	0/1:254,102:0.29:356
chr7	141760293	rs2961073	TG	GC	3060.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;JOINED;set=Intersection	GT:AD:AF:DP	0/1:81,81:0.50:162
chr7	141762625	rs62477625	A	G	303.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:29,15:0.34:44
chr7	141765753	rs77524472	G	T	1037.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.897;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=0.874;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.98;ReadPosRankSum=0.977;SOR=0.557;set=HC	GT:AD:AF:DP	0/1:55,49:0.47:104
chr7	141765768	rs147060456	G	GT	430.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.581;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.61;ReadPosRankSum=0.423;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:18,32:0.64:50
chr7	141776782	rs10259247	A	G	1207.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:99,57:0.37:156
chr7	141785567	.	C	G	67.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.349;ClippingRankSum=0.000;DP=115;ExcessHet=3.0103;FS=1.285;MLEAC=1;MLEAF=0.500;MQ=55.57;MQRankSum=-6.197;QD=0.59;ReadPosRankSum=-4.623;SOR=0.406;set=HC	GT:AD:AF:DP	0/1:99,15:0.13:114
chr7	141785635	rs117653698	C	T	1254.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:253,75:0.23:328
chr7	141794763	rs138070479	ATT	A	2600.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.821;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.28;MQRankSum=0.273;QD=24.31;ReadPosRankSum=-1.518;SOR=1.825;set=HC	GT:AD:AF:DP	1/1:10,97:0.91:107
chr7	141794790	rs4259331	A	G	3656.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr7	141796131	rs6975672	G	A	6080.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.14;QD=28.55;SOR=0.721;set=HC	GT:AD:AF:DP	1/1:0,213:1.00:213
chr7	141796250	rs6976953	C	T	4513.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr7	141840581	rs73158439	T	C	2460.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:109,116:0.52:225
chr7	141844888	rs12154456	C	G	1744.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:90,82:0.48:172
chr7	141854436	rs61281471	A	T	448.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:25,20:0.44:45
chr7	141854659	rs11770705	A	G	2604.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:127,119:0.48:246
chr7	141857846	rs7811706	A	G	9789.77	.	AC=2;AF=1.00;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	1/1:0,363:1.00:363
chr7	141860199	rs60403744	A	G	155.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr7	141860861	rs34106041	T	C	1340.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:52,62:0.54:114
chr7	141861072	rs12703440	C	A	642.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:36,30:0.45:66
chr7	141870134	rs56365887	G	T	796.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:49,34:0.41:83
chr7	141871251	rs7779634	A	T	2617.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:163,134:0.45:297
chr7	141872996	rs73158454	A	G	3045.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.672;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=4.243;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.17;ReadPosRankSum=1.415;SOR=0.400;set=HC	GT:AD:AF:DP	0/1:72,79:0.52:151
chr7	141873000	rs9986803	T	A	3151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.508;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=2.116;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.34;ReadPosRankSum=0.907;SOR=0.509;set=HC	GT:AD:AF:DP	0/1:78,85:0.52:163
chr7	141875431	rs12532575	C	T	1687.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:63,78:0.55:141
chr7	141875594	rs6958066	C	A	1650.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:82,79:0.49:161
chr7	141875671	rs6958102	C	G	1082.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:41,46:0.53:87
chr7	141884682	rs76031018	CAT	C	1237.73	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:36,33:0.48:69
chr7	141885944	rs111646116	CT	C	1263.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.113;ClippingRankSum=0.000;DB;DP=262;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=0.977;QD=5.72;ReadPosRankSum=-0.475;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:107,114:0.52:221
chr7	141896059	rs4236467	A	G	1947.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:97,99:0.51:196
chr7	141897595	rs3110843	T	C	2279.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:74,95:0.56:169
chr7	141898023	rs4260813	C	A	3726.77	.	AC=1;AF=0.500;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	0/1:220,186:0.46:406
chr7	141898522	rs2960768	T	A	7370.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr7	141898680	rs2961065	T	C	167.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:19,10:0.34:29
chr7	141899660	rs11402165	C	CT	891.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.422;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=8.350;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.063;QD=4.55;ReadPosRankSum=1.456;SOR=1.320;set=HC	GT:AD:AF:DP	0/1:119,77:0.39:196
chr7	141901322	rs6963175	G	A	1784.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:69,86:0.55:155
chr7	141901506	rs6464469	C	T	657.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:37,30:0.45:67
chr7	141955390	rs145731516	C	T	2293.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:105,113:0.52:218
chr7	141957504	rs7786497	A	G	4090.77	.	AC=1;AF=0.500;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	0/1:162,196:0.55:358
chr7	141957653	rs35443843	G	A	319.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:21,14:0.40:35
chr7	142001030	rs56095598	A	G	7817.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr7	142008403	rs376053846	C	G	417.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.002;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=9.195;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.82;ReadPosRankSum=1.410;SOR=0.192;set=HC	GT:AD:AF:DP	0/1:128,20:0.14:148
chr7	142008408	rs370407588	T	G	468.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.771;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=6.744;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.13;ReadPosRankSum=0.641;SOR=0.253;set=HC	GT:AD:AF:DP	0/1:128,22:0.15:150
chr7	142008434	.	G	A	1038.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.296;ClippingRankSum=0.000;DP=225;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.64;ReadPosRankSum=-1.323;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:187,37:0.17:224
chr7	142008440	.	T	C	1218.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.931;ClippingRankSum=0.000;DP=236;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.19;ReadPosRankSum=-1.789;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:195,40:0.17:235
chr7	142008442	.	T	C	1343.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.553;ClippingRankSum=0.000;DP=245;ExcessHet=3.0103;FS=0.629;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.53;ReadPosRankSum=-2.514;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:199,44:0.18:243
chr7	142008453	.	C	G	1664.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.609;ClippingRankSum=0.000;DP=291;ExcessHet=3.0103;FS=0.565;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.78;ReadPosRankSum=-2.383;SOR=0.626;set=HC	GT:AD:AF:DP	0/1:234,54:0.19:288
chr7	142008469	.	C	T	1671.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.698;ClippingRankSum=0.000;DP=353;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.80;ReadPosRankSum=-0.024;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:288,60:0.17:348
chr7	142008477	.	G	A	1899.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.707;ClippingRankSum=0.000;DP=398;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.83;ReadPosRankSum=0.233;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:325,68:0.17:393
chr7	142008484	.	T	A	2073.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.232;ClippingRankSum=0.000;DP=429;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.89;ReadPosRankSum=0.225;SOR=0.630;set=HC	GT:AD:AF:DP	0/1:348,76:0.18:424
chr7	142008491	.	A	G	2476.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.890;ClippingRankSum=0.000;DP=464;ExcessHet=3.0103;FS=0.684;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.41;ReadPosRankSum=0.048;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:373,85:0.19:458
chr7	142008502	rs370591069	TA	CG	2640.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.140;ClippingRankSum=0.000;DB;DP=495;ExcessHet=3.0103;FS=0.670;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.40;ReadPosRankSum=-0.143;SOR=0.583;set=HC	GT:AD:AF:DP	0/1:396,93:0.19:489
chr7	142008529	rs367608484	C	G	3462.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.478;ClippingRankSum=0.000;DB;DP=544;ExcessHet=3.0103;FS=2.195;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.44;ReadPosRankSum=-0.698;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:424,114:0.21:538
chr7	142008533	.	CCG	C	3441.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.184;ClippingRankSum=0.000;DP=546;ExcessHet=3.0103;FS=0.656;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.37;ReadPosRankSum=-0.176;SOR=0.596;set=HC	GT:AD:AF:DP	0/1:428,112:0.21:540
chr7	142008536	.	T	TAC	3409.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.458;ClippingRankSum=0.000;DP=534;ExcessHet=3.0103;FS=1.389;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.46;ReadPosRankSum=-0.111;SOR=0.609;set=HC	GT:AD:AF:DP	0/1:417,111:0.21:528
chr7	142008542	rs373709044	A	G	3411.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.112;ClippingRankSum=0.000;DB;DP=532;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.49;ReadPosRankSum=0.795;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:416,110:0.21:526
chr7	142008573	rs375153223	G	A	3449.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.983;ClippingRankSum=0.000;DB;DP=512;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.83;ReadPosRankSum=1.027;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:391,114:0.23:505
chr7	142008577	rs369645839	G	A	3334.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.353;ClippingRankSum=0.000;DB;DP=505;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.70;ReadPosRankSum=2.112;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:391,107:0.21:498
chr7	142008581	rs371566486	CT	AC	3257.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.814;ClippingRankSum=0.000;DB;DP=506;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.53;ReadPosRankSum=2.489;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:393,106:0.21:499
chr7	142008593	rs368999058	T	C	2037.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.397;ClippingRankSum=0.000;DB;DP=502;ExcessHet=3.0103;FS=0.653;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.10;ReadPosRankSum=2.886;SOR=0.789;set=HC	GT:AD:AF:DP	0/1:397,100:0.20:497
chr7	142008634	.	ACG	A	2211.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.979;ClippingRankSum=0.000;DP=415;ExcessHet=3.0103;FS=3.560;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.63;ReadPosRankSum=-2.068;SOR=0.928;set=HC	GT:AD:AF:DP	0/1:316,77:0.20:393
chr7	142008638	.	C	A	2220.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.259;ClippingRankSum=0.000;DP=395;ExcessHet=3.0103;FS=3.544;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.71;ReadPosRankSum=-2.620;SOR=0.908;set=HC	GT:AD:AF:DP	0/1:312,77:0.20:389
chr7	142008639	.	A	AGG	2259.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.801;ClippingRankSum=0.000;DP=392;ExcessHet=3.0103;FS=3.615;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.85;ReadPosRankSum=-2.263;SOR=0.930;set=HC	GT:AD:AF:DP	0/1:311,75:0.19:386
chr7	142008644	.	CA	TC	2161.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.634;ClippingRankSum=0.000;DP=382;ExcessHet=3.0103;FS=2.217;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.73;ReadPosRankSum=-2.145;SOR=0.862;set=HC	GT:AD:AF:DP	0/1:303,74:0.20:377
chr7	142008653	rs370721246	T	A	1969.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.992;ClippingRankSum=0.000;DB;DP=358;ExcessHet=3.0103;FS=1.048;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.56;ReadPosRankSum=-1.926;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:287,67:0.19:354
chr7	142008672	.	G	A	1718.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.797;ClippingRankSum=0.000;DP=306;ExcessHet=3.0103;FS=4.050;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.67;ReadPosRankSum=-2.155;SOR=0.478;set=HC	GT:AD:AF:DP	0/1:241,62:0.20:303
chr7	142008675	rs376217909	A	G	1699.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.331;ClippingRankSum=0.000;DB;DP=297;ExcessHet=3.0103;FS=2.583;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.76;ReadPosRankSum=-1.172;SOR=0.499;set=HC	GT:AD:AF:DP	0/1:238,57:0.19:295
chr7	142008718	.	T	C	1493.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.626;ClippingRankSum=0.000;DP=243;ExcessHet=3.0103;FS=1.231;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.15;ReadPosRankSum=0.814;SOR=0.585;set=HC	GT:AD:AF:DP	0/1:192,51:0.21:243
chr7	142008727	.	G	T	1546.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.566;ClippingRankSum=0.000;DP=246;ExcessHet=3.0103;FS=1.209;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.29;ReadPosRankSum=1.079;SOR=0.596;set=HC	GT:AD:AF:DP	0/1:194,52:0.21:246
chr7	142008733	.	A	G	1843.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.426;ClippingRankSum=0.000;DP=247;ExcessHet=3.0103;FS=2.617;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.46;ReadPosRankSum=0.264;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:191,56:0.23:247
chr7	142008737	.	T	C	1861.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.234;ClippingRankSum=0.000;DP=245;ExcessHet=3.0103;FS=3.482;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.63;ReadPosRankSum=0.271;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:188,56:0.23:244
chr7	142008745	.	TC	CA	1957.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.819;ClippingRankSum=0.000;DP=246;ExcessHet=3.0103;FS=2.557;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.99;ReadPosRankSum=-1.027;SOR=0.829;set=HC	GT:AD:AF:DP	0/1:184,61:0.25:245
chr7	142008750	.	A	T	2061.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.597;ClippingRankSum=0.000;DP=262;ExcessHet=3.0103;FS=3.237;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.90;ReadPosRankSum=-0.831;SOR=0.868;set=HC	GT:AD:AF:DP	0/1:197,64:0.25:261
chr7	142008783	.	A	G	1902.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.027;ClippingRankSum=0.000;DP=298;ExcessHet=3.0103;FS=0.520;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.41;ReadPosRankSum=2.397;SOR=0.771;set=HC	GT:AD:AF:DP	0/1:234,63:0.21:297
chr7	142008785	.	A	C	1902.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.523;ClippingRankSum=0.000;DP=301;ExcessHet=3.0103;FS=0.519;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.34;ReadPosRankSum=2.617;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:237,63:0.21:300
chr7	142008799	rs17236	C	T	2060.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.879;ClippingRankSum=0.000;DB;DP=311;ExcessHet=3.0103;FS=0.502;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.67;ReadPosRankSum=2.487;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:242,67:0.22:309
chr7	142008803	.	C	T	2060.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.454;ClippingRankSum=0.000;DP=314;ExcessHet=3.0103;FS=0.503;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.61;ReadPosRankSum=2.830;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:246,66:0.21:312
chr7	142008879	.	C	T	1143.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.614;ClippingRankSum=0.000;DP=213;ExcessHet=3.0103;FS=1.394;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.45;ReadPosRankSum=-2.097;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:169,41:0.20:210
chr7	142008881	.	G	A	1140.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.089;ClippingRankSum=0.000;DP=213;ExcessHet=3.0103;FS=1.427;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.43;ReadPosRankSum=-1.512;SOR=0.888;set=HC	GT:AD:AF:DP	0/1:171,39:0.19:210
chr7	142008884	.	A	G	1100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.192;ClippingRankSum=0.000;DP=199;ExcessHet=3.0103;FS=1.506;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.59;ReadPosRankSum=-1.243;SOR=0.856;set=HC	GT:AD:AF:DP	0/1:162,35:0.18:197
chr7	142008887	.	T	C	914.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.236;ClippingRankSum=0.000;DP=195;ExcessHet=3.0103;FS=2.473;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.72;ReadPosRankSum=-1.097;SOR=0.970;set=HC	GT:AD:AF:DP	0/1:160,34:0.18:194
chr7	142008932	rs375535167	GC	G	384.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.196;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.89;ReadPosRankSum=0.851;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:83,16:0.16:99
chr7	142008934	.	A	T	393.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.320;ClippingRankSum=0.000;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.06;ReadPosRankSum=0.914;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:81,16:0.16:97
chr7	142008939	.	A	C	445.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.252;ClippingRankSum=0.000;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.95;ReadPosRankSum=-0.129;SOR=0.515;set=HC	GT:AD:AF:DP	0/1:73,17:0.19:90
chr7	142008941	.	C	T	463.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.334;ClippingRankSum=0.000;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.39;ReadPosRankSum=-0.061;SOR=0.498;set=HC	GT:AD:AF:DP	0/1:70,16:0.19:86
chr7	142008959	.	G	A	143.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.421;ClippingRankSum=0.000;DP=63;ExcessHet=3.0103;FS=1.714;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.28;ReadPosRankSum=0.511;SOR=1.244;set=HC	GT:AD:AF:DP	0/1:52,11:0.17:63
chr7	142013384	rs361401	G	C	20945.77	.	AC=2;AF=1.00;AN=2;DB;DP=766;MQ=59.99;set=Intersection	GT:AD:AF:DP	1/1:0,759:1.00:759
chr7	142021521	rs72430962	TCA	T	2151.73	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:54,56:0.51:110
chr7	142028092	.	A	G	102.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.543;ClippingRankSum=0.000;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.94;MQRankSum=-6.493;QD=1.77;ReadPosRankSum=-2.537;SOR=0.353;set=HC	GT:AD:AF:DP	0/1:49,9:0.16:58
chr7	142028108	rs361428	A	C	3119.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.00;SOR=2.484;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr7	142028108	.	ACTTGAGAGTC	CCTTGAGAGTA,CCTTGAGAGTC	970	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.37;FR=0.5000,0.5000;HP=4;HapScore=2;MGOF=9;MMLQ=28;MQ=59.78;NF=33,59;NR=8,15;PP=970,699;QD=24.9626310942;SC=AGAATGACCCACTTGAGAGTC;SbPval=0.57;Source=Platypus;TC=75;TCF=60;TCR=15;TR=41,74;WE=142028126;WS=142028098;set=Platypus	GT:AF:DP	0/1:0.55:75
chr7	142028118	rs361429	C	A	1374.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.960;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.893;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.61;ReadPosRankSum=-0.774;SOR=0.887;set=HC	GT:AD:AF:DP	0/1:43,58:0.57:101
chr7	142028462	.	T	C	47.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.703;ClippingRankSum=0.000;DP=787;ExcessHet=3.0103;FS=1.110;MLEAC=1;MLEAF=0.500;MQ=59.36;MQRankSum=-27.328;QD=0.06;ReadPosRankSum=-6.515;SOR=0.962;set=HC	GT:AD:AF:DP	0/1:729,52:0.07:781
chr7	142028472	.	C	T	484.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.464;ClippingRankSum=0.000;DP=834;ExcessHet=3.0103;FS=1.030;MLEAC=1;MLEAF=0.500;MQ=59.25;MQRankSum=-27.496;QD=0.59;ReadPosRankSum=-4.949;SOR=1.058;set=HC	GT:AD:AF:DP	0/1:764,64:0.08:828
chr7	142028474	.	TC	GG	946.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.221;ClippingRankSum=0.000;DP=838;ExcessHet=3.0103;FS=2.195;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.23;MQRankSum=-27.152;QD=1.14;ReadPosRankSum=-5.039;SOR=1.097;set=HC	GT:AD:AF:DP	0/1:764,68:0.08:832
chr7	142028485	.	C	A	1432.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.157;ClippingRankSum=0.000;DP=914;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.06;MQRankSum=-26.751;QD=1.58;ReadPosRankSum=-4.041;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:814,94:0.10:908
chr7	142028490	.	A	C	1644.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.795;ClippingRankSum=0.000;DP=927;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.04;MQRankSum=-26.903;QD=1.78;ReadPosRankSum=-2.557;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:824,98:0.11:922
chr7	142028500	.	A	G	1869.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.933;ClippingRankSum=0.000;DP=942;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.01;MQRankSum=-27.031;QD=1.99;ReadPosRankSum=0.180;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:832,106:0.11:938
chr7	142028506	.	CA	TG	1890.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.973;ClippingRankSum=0.000;DP=962;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.97;MQRankSum=-27.401;QD=1.98;ReadPosRankSum=2.225;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:848,109:0.11:957
chr7	142028533	.	C	A	1935.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.519;ClippingRankSum=0.000;DP=888;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.90;MQRankSum=-26.653;QD=2.19;ReadPosRankSum=7.015;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:779,104:0.12:883
chr7	142028538	.	G	A	2004.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.878;ClippingRankSum=0.000;DP=853;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.85;MQRankSum=-26.407;QD=2.36;ReadPosRankSum=6.252;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:747,102:0.12:849
chr7	142028540	.	G	A	1978.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.825;ClippingRankSum=0.000;DP=843;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.84;MQRankSum=-26.262;QD=2.36;ReadPosRankSum=5.709;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:738,102:0.12:840
chr7	142028542	.	G	T	1993.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.492;ClippingRankSum=0.000;DP=832;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.82;MQRankSum=-26.100;QD=2.40;ReadPosRankSum=5.075;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:728,102:0.12:830
chr7	142028546	.	TC	CT	2008.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.455;ClippingRankSum=0.000;DP=820;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.80;MQRankSum=-25.904;QD=2.46;ReadPosRankSum=3.867;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:716,102:0.12:818
chr7	142028551	.	CA	GG	2090.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.423;ClippingRankSum=0.000;DP=803;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.78;MQRankSum=-25.624;QD=2.61;ReadPosRankSum=2.051;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:699,102:0.13:801
chr7	142028555	.	C	T	2147.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.128;ClippingRankSum=0.000;DP=797;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.77;MQRankSum=-25.524;QD=2.70;ReadPosRankSum=0.779;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:693,102:0.13:795
chr7	142032115	rs10567930	CTG	C	844.73	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:52,39:0.43:91
chr7	142032610	.	A	G	2706.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.519;ClippingRankSum=0.000;DP=408;ExcessHet=3.0103;FS=3.326;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.72;ReadPosRankSum=0.638;SOR=1.000;set=HC	GT:AD:AF:DP	0/1:315,88:0.22:403
chr7	142032613	.	TG	CA	2721.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.561;ClippingRankSum=0.000;DP=394;ExcessHet=3.0103;FS=5.108;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.00;ReadPosRankSum=0.907;SOR=1.018;set=HC	GT:AD:AF:DP	0/1:301,88:0.23:389
chr7	142032646	rs78118526	G	A	9437.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.77;SOR=1.702;set=HC	GT:AD:AF:DP	1/1:0,288:1.00:288
chr7	142032646	.	GTGTACATAGTGCAA	ATGTACATAGTGCAA,ATGTACATGGTGAAG	2962	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.52;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=50;MMLQ=26;MQ=59.93;NF=70,27;NR=147,41;PP=2962,2924;QD=20;SC=TTAAAAATGTGTGTACATAGT;SbPval=0.5;Source=Platypus;TC=218;TCF=70;TCR=148;TR=217,68;WE=142032668;WS=142032636;set=Platypus	GT:AF:DP	0/1:1.00:218
chr7	142032654	rs190649630	A	G	2685.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.912;ClippingRankSum=0.000;DB;DP=264;ExcessHet=3.0103;FS=6.126;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.25;ReadPosRankSum=4.307;SOR=1.123;set=HC	GT:AD:AF:DP	0/1:183,79:0.30:262
chr7	142032658	.	C	A	2656.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.235;ClippingRankSum=0.000;DP=247;ExcessHet=3.0103;FS=7.382;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.84;ReadPosRankSum=4.320;SOR=1.168;set=HC	GT:AD:AF:DP	0/1:169,76:0.31:245
chr7	142032660	.	A	G	2651.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.435;ClippingRankSum=0.000;DP=240;ExcessHet=3.0103;FS=5.380;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.10;ReadPosRankSum=4.078;SOR=1.095;set=HC	GT:AD:AF:DP	0/1:163,76:0.32:239
chr7	142032677	rs375896144	G	A	1677.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:113,68:0.38:181
chr7	142032713	rs371809716	A	T	1320.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:58,44:0.43:102
chr7	142032729	.	A	G	899.77	.	AC=1;AF=0.500;AN=2;DP=69;set=Intersection	GT:AD:AF:DP	0/1:43,26:0.38:69
chr7	142045446	rs56060483	G	C	4799.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.651;ClippingRankSum=0.000;DB;DP=397;ExcessHet=3.0103;FS=1.783;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.24;ReadPosRankSum=1.648;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:257,135:0.34:392
chr7	142045449	rs371824542	A	G	4796.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.143;ClippingRankSum=0.000;DB;DP=406;ExcessHet=3.0103;FS=1.203;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.96;ReadPosRankSum=2.250;SOR=0.596;set=HC	GT:AD:AF:DP	0/1:266,135:0.34:401
chr7	142045518	.	G	A	3162.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.598;ClippingRankSum=0.000;DP=650;ExcessHet=3.0103;FS=3.575;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.94;ReadPosRankSum=1.120;SOR=0.482;set=HC	GT:AD:AF:DP	0/1:442,198:0.31:640
chr7	142045613	.	G	T	3768.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.981;ClippingRankSum=0.000;DP=788;ExcessHet=3.0103;FS=1.243;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.87;ReadPosRankSum=-0.674;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:558,216:0.28:774
chr7	142045678	rs61750018	ACT	GTC	9803.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.557;ClippingRankSum=0.000;DB;DP=1019;ExcessHet=3.0103;FS=0.586;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.69;ReadPosRankSum=1.169;SOR=0.781;set=HC	GT:AD:AF:DP	0/1:726,286:0.28:1012
chr7	142045683	rs61750019	A	G	9821.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.599;ClippingRankSum=0.000;DB;DP=1047;ExcessHet=3.0103;FS=1.977;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.44;ReadPosRankSum=2.248;SOR=0.845;set=HC	GT:AD:AF:DP	0/1:755,285:0.27:1040
chr7	142045690	rs61750021	A	G	9767.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.511;ClippingRankSum=0.000;DB;DP=1082;ExcessHet=3.0103;FS=2.008;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.09;ReadPosRankSum=3.491;SOR=0.902;set=HC	GT:AD:AF:DP	0/1:791,284:0.26:1075
chr7	142045692	rs61750022	AC	GT	9766.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.584;ClippingRankSum=0.000;DB;DP=1090;ExcessHet=3.0103;FS=2.857;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.02;ReadPosRankSum=3.414;SOR=0.946;set=HC	GT:AD:AF:DP	0/1:797,286:0.26:1083
chr7	142045802	rs2855871	T	C	3176.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.081;ClippingRankSum=0.000;DB;DP=714;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-1.617;QD=4.52;ReadPosRankSum=2.601;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:509,194:0.28:703
chr7	142045848	rs17225	T	C	17322.77	.	AC=2;AF=1.00;AN=2;DB;DP=584;set=Intersection	GT:AD:AF:DP	1/1:0,578:1.00:578
chr7	142045897	rs361402	C	T	4022.77	.	AC=1;AF=0.500;AN=2;DB;DP=557;set=Intersection	GT:AD:AF:DP	0/1:347,206:0.37:553
chr7	142045899	rs2974900	A	G	3403.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.319;ClippingRankSum=0.000;DB;DP=550;ExcessHet=3.0103;FS=2.242;MLEAC=1;MLEAF=0.500;MQ=59.82;MQRankSum=-5.391;QD=6.23;ReadPosRankSum=0.654;SOR=0.909;set=HC	GT:AD:AF:DP	0/1:427,119:0.22:546
chr7	142045912	rs374368376	A	G	3082.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.859;ClippingRankSum=0.000;DB;DP=518;ExcessHet=3.0103;FS=4.326;MLEAC=1;MLEAF=0.500;MQ=59.81;MQRankSum=-5.653;QD=6.00;ReadPosRankSum=-0.149;SOR=1.095;set=HC	GT:AD:AF:DP	0/1:410,104:0.20:514
chr7	142045924	rs1811089	A	G	9108.77	.	AC=1;AF=0.500;AN=2;DB;DP=470;set=Intersection	GT:AD:AF:DP	0/1:90,376:0.81:466
chr7	142045951	.	T	TGCTCATTCATCCATGTGGCAACGTTACATCCTATGCTCATATTTAGAGTGTGGGTTTTCTTTAGCGTGTGACTC	834.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.114;ClippingRankSum=0.000;DP=358;ExcessHet=3.0103;FS=83.772;MLEAC=1;MLEAF=0.500;MQ=59.73;MQRankSum=-7.470;QD=2.54;ReadPosRankSum=-5.269;SOR=6.695;set=HC	GT:AD:AF:DP	0/1:287,42:0.13:329
chr7	142099425	.	A	G	3657.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.452;ClippingRankSum=0.000;DP=397;ExcessHet=3.0103;FS=0.979;MLEAC=1;MLEAF=0.500;MQ=58.47;MQRankSum=-10.038;QD=9.26;ReadPosRankSum=-0.768;SOR=0.600;set=HC	GT:AD:AF:DP	0/1:284,111:0.28:395
chr7	142099438	.	A	G	1658.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.495;ClippingRankSum=0.000;DP=502;ExcessHet=3.0103;FS=1.371;MLEAC=1;MLEAF=0.500;MQ=58.58;MQRankSum=-11.548;QD=3.39;ReadPosRankSum=1.825;SOR=0.876;set=HC	GT:AD:AF:DP	0/1:360,129:0.26:489
chr7	142099484	.	G	C	2971.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.731;ClippingRankSum=0.000;DP=869;ExcessHet=3.0103;FS=2.067;MLEAC=1;MLEAF=0.500;MQ=58.76;MQRankSum=-19.466;QD=3.49;ReadPosRankSum=1.857;SOR=0.525;set=HC	GT:AD:AF:DP	0/1:633,219:0.26:852
chr7	142099512	rs373830246	T	G	2211.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.303;ClippingRankSum=0.000;DB;DP=1084;ExcessHet=3.0103;FS=4.212;MLEAC=1;MLEAF=0.500;MQ=58.87;MQRankSum=-23.231;QD=2.08;ReadPosRankSum=1.928;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:847,217:0.20:1064
chr7	142099533	.	T	C	4789.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.914;ClippingRankSum=0.000;DP=1173;ExcessHet=3.0103;FS=3.612;MLEAC=1;MLEAF=0.500;MQ=59.10;MQRankSum=-26.454;QD=4.10;ReadPosRankSum=2.153;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:977,191:0.16:1168
chr7	142099537	.	G	T	4532.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.722;ClippingRankSum=0.000;DP=1176;ExcessHet=3.0103;FS=3.691;MLEAC=1;MLEAF=0.500;MQ=59.11;MQRankSum=-27.510;QD=3.87;ReadPosRankSum=1.782;SOR=0.843;set=HC	GT:AD:AF:DP	0/1:994,178:0.15:1172
chr7	142099541	.	T	C	4234.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.242;ClippingRankSum=0.000;DP=1192;ExcessHet=3.0103;FS=3.820;MLEAC=1;MLEAF=0.500;MQ=59.15;MQRankSum=-28.062;QD=3.56;ReadPosRankSum=0.550;SOR=0.908;set=HC	GT:AD:AF:DP	0/1:1016,173:0.15:1189
chr7	142099548	.	A	G	3740.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.203;ClippingRankSum=0.000;DP=1203;ExcessHet=3.0103;FS=3.916;MLEAC=1;MLEAF=0.500;MQ=59.16;MQRankSum=-29.177;QD=3.11;ReadPosRankSum=-1.594;SOR=0.987;set=HC	GT:AD:AF:DP	0/1:1039,162:0.13:1201
chr7	142099968	rs361367	C	T	6004.77	.	AC=1;AF=0.500;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	0/1:209,171:0.45:380
chr7	142099988	rs361366	A	G	5559.77	.	AC=1;AF=0.500;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	0/1:206,151:0.42:357
chr7	142104144	rs361434	T	C	6545.77	.	AC=1;AF=0.500;AN=2;DB;DP=632;set=Intersection	GT:AD:AF:DP	0/1:321,305:0.49:626
chr7	142119831	rs361390	G	A	4756.77	.	AC=1;AF=0.500;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	0/1:192,213:0.53:405
chr7	142120168	rs57417024	T	TCA	2534.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.532;ClippingRankSum=0.000;DB;DP=339;ExcessHet=3.0103;FS=1.724;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=10.52;ReadPosRankSum=0.506;SOR=0.559;set=HC	GT:AD:AF:DP	0/1:127,114:0.47:241
chr7	142124170	rs361452	C	T	14983.77	.	AC=2;AF=1.00;AN=2;DB;DP=560;set=Intersection	GT:AD:AF:DP	1/1:0,543:1.00:543
chr7	142124424	rs361449	T	G	12982.77	.	AC=2;AF=1.00;AN=2;DB;DP=490;set=Intersection	GT:AD:AF:DP	1/1:1,484:1.00:485
chr7	142131695	.	G	C	246.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.463;ClippingRankSum=0.000;DP=415;ExcessHet=3.0103;FS=35.544;MLEAC=1;MLEAF=0.500;MQ=58.81;MQRankSum=-18.261;QD=0.60;ReadPosRankSum=-3.446;SOR=4.042;set=HC	GT:AD:AF:DP	0/1:381,32:0.08:413
chr7	142131702	.	A	G	674.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.353;ClippingRankSum=0.000;DP=437;ExcessHet=3.0103;FS=23.728;MLEAC=1;MLEAF=0.500;MQ=58.82;MQRankSum=-16.260;QD=1.55;ReadPosRankSum=-4.220;SOR=2.616;set=HC	GT:AD:AF:DP	0/1:391,44:0.10:435
chr7	142131703	.	A	G	668.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.859;ClippingRankSum=0.000;DP=439;ExcessHet=3.0103;FS=23.381;MLEAC=1;MLEAF=0.500;MQ=58.83;MQRankSum=-16.298;QD=1.53;ReadPosRankSum=-3.964;SOR=2.618;set=HC	GT:AD:AF:DP	0/1:393,44:0.10:437
chr7	142131709	.	T	C	1463.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.584;ClippingRankSum=0.000;DP=464;ExcessHet=3.0103;FS=30.775;MLEAC=1;MLEAF=0.500;MQ=58.89;MQRankSum=-15.208;QD=3.17;ReadPosRankSum=-3.517;SOR=3.002;set=HC	GT:AD:AF:DP	0/1:410,52:0.11:462
chr7	142131710	.	G	A	1535.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.007;ClippingRankSum=0.000;DP=471;ExcessHet=3.0103;FS=33.421;MLEAC=1;MLEAF=0.500;MQ=58.91;MQRankSum=-14.989;QD=3.27;ReadPosRankSum=-3.494;SOR=3.087;set=HC	GT:AD:AF:DP	0/1:415,54:0.12:469
chr7	142131734	.	A	T	2761.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.141;ClippingRankSum=0.000;DP=545;ExcessHet=3.0103;FS=8.685;MLEAC=1;MLEAF=0.500;MQ=58.99;MQRankSum=-13.216;QD=5.08;ReadPosRankSum=-1.436;SOR=1.240;set=HC	GT:AD:AF:DP	0/1:446,98:0.18:544
chr7	142131738	.	G	GA	2988.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.987;ClippingRankSum=0.000;DP=550;ExcessHet=3.0103;FS=7.062;MLEAC=1;MLEAF=0.500;MQ=59.02;MQRankSum=-12.657;QD=5.44;ReadPosRankSum=-0.380;SOR=1.173;set=HC	GT:AD:AF:DP	0/1:449,100:0.18:549
chr7	142131746	.	T	C	3069.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.042;ClippingRankSum=0.000;DP=580;ExcessHet=3.0103;FS=5.654;MLEAC=1;MLEAF=0.500;MQ=59.06;MQRankSum=-13.543;QD=5.30;ReadPosRankSum=2.061;SOR=1.015;set=HC	GT:AD:AF:DP	0/1:471,108:0.19:579
chr7	142131747	rs368257836	G	A	3075.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.651;ClippingRankSum=0.000;DB;DP=581;ExcessHet=3.0103;FS=5.685;MLEAC=1;MLEAF=0.500;MQ=59.06;MQRankSum=-13.660;QD=5.30;ReadPosRankSum=2.222;SOR=0.980;set=HC	GT:AD:AF:DP	0/1:471,109:0.19:580
chr7	142131779	rs370810757	A	T	1634.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.824;ClippingRankSum=0.000;DB;DP=643;ExcessHet=3.0103;FS=2.179;MLEAC=1;MLEAF=0.500;MQ=58.93;MQRankSum=-14.504;QD=2.56;ReadPosRankSum=4.359;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:499,140:0.22:639
chr7	142131832	rs371240412	C	T	3116.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.097;ClippingRankSum=0.000;DB;DP=508;ExcessHet=3.0103;FS=0.643;MLEAC=1;MLEAF=0.500;MQ=59.01;MQRankSum=-10.734;QD=6.16;ReadPosRankSum=-3.503;SOR=0.790;set=HC	GT:AD:AF:DP	0/1:398,108:0.21:506
chr7	142131836	rs375356148	C	G	3057.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.434;ClippingRankSum=0.000;DB;DP=494;ExcessHet=3.0103;FS=1.415;MLEAC=1;MLEAF=0.500;MQ=59.13;MQRankSum=-10.213;QD=6.21;ReadPosRankSum=-2.837;SOR=0.796;set=HC	GT:AD:AF:DP	0/1:394,98:0.20:492
chr7	142131858	rs367836940	C	A	1716.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.043;ClippingRankSum=0.000;DB;DP=384;ExcessHet=3.0103;FS=3.965;MLEAC=1;MLEAF=0.500;MQ=59.09;MQRankSum=-10.173;QD=4.48;ReadPosRankSum=-2.413;SOR=0.959;set=HC	GT:AD:AF:DP	0/1:320,63:0.16:383
chr7	142131868	rs374575972	C	T	1240.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.055;ClippingRankSum=0.000;DB;DP=327;ExcessHet=3.0103;FS=7.065;MLEAC=1;MLEAF=0.500;MQ=59.00;MQRankSum=-11.803;QD=3.81;ReadPosRankSum=-1.436;SOR=1.222;set=HC	GT:AD:AF:DP	0/1:279,47:0.14:326
chr7	142131872	rs368030585	G	T	931.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.147;ClippingRankSum=0.000;DB;DP=284;ExcessHet=3.0103;FS=8.233;MLEAC=1;MLEAF=0.500;MQ=59.06;MQRankSum=-12.498;QD=3.29;ReadPosRankSum=-0.845;SOR=1.413;set=HC	GT:AD:AF:DP	0/1:245,38:0.13:283
chr7	142131885	.	A	T	677.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.181;ClippingRankSum=0.000;DP=235;ExcessHet=3.0103;FS=5.035;MLEAC=1;MLEAF=0.500;MQ=58.89;MQRankSum=-12.401;QD=2.90;ReadPosRankSum=-1.252;SOR=1.214;set=HC	GT:AD:AF:DP	0/1:203,31:0.13:234
chr7	142131889	.	A	C	677.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.635;ClippingRankSum=0.000;DP=219;ExcessHet=3.0103;FS=4.057;MLEAC=1;MLEAF=0.500;MQ=58.76;MQRankSum=-13.464;QD=3.11;ReadPosRankSum=-1.299;SOR=1.155;set=HC	GT:AD:AF:DP	0/1:190,28:0.13:218
chr7	142131894	.	AA	CG	542.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.301;ClippingRankSum=0.000;DP=187;ExcessHet=3.0103;FS=4.619;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.56;MQRankSum=-13.234;QD=2.92;ReadPosRankSum=-1.767;SOR=1.302;set=HC	GT:AD:AF:DP	0/1:162,24:0.13:186
chr7	142131904	.	T	C	254.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.477;ClippingRankSum=0.000;DP=157;ExcessHet=3.0103;FS=3.994;MLEAC=1;MLEAF=0.500;MQ=58.39;MQRankSum=-11.550;QD=1.64;ReadPosRankSum=-0.786;SOR=1.375;set=HC	GT:AD:AF:DP	0/1:138,17:0.11:155
chr7	142131922	.	TC	CT	87.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.601;ClippingRankSum=0.000;DP=120;ExcessHet=3.0103;FS=3.479;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.83;MQRankSum=-9.611;QD=0.74;ReadPosRankSum=1.828;SOR=1.347;set=HC	GT:AD:AF:DP	0/1:109,10:0.08:119
chr7	142139259	rs361374	G	A	3025.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:113,135:0.54:248
chr7	142139271	rs146977487	TG	CA	11997.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;JOINED;set=Intersection	GT:AD:AF:DP	0/1:21,284:0.93:305
chr7	142139348	rs73742284	C	T	16802.77	.	AC=2;AF=1.00;AN=2;DB;DP=654;set=Intersection	GT:AD:AF:DP	1/1:0,613:1.00:613
chr7	142143639	rs377139967	T	G	2303.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.367;ClippingRankSum=0.000;DB;DP=329;ExcessHet=3.0103;FS=9.116;MLEAC=1;MLEAF=0.500;MQ=58.81;MQRankSum=-11.007;QD=7.00;ReadPosRankSum=3.701;SOR=0.324;set=HC	GT:AD:AF:DP	0/1:251,78:0.24:329
chr7	142143646	rs369634458	G	A	2077.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.701;ClippingRankSum=0.000;DB;DP=364;ExcessHet=3.0103;FS=7.613;MLEAC=1;MLEAF=0.500;MQ=58.96;MQRankSum=-12.077;QD=5.72;ReadPosRankSum=4.381;SOR=0.356;set=HC	GT:AD:AF:DP	0/1:291,72:0.20:363
chr7	142143675	.	A	C	579.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.565;ClippingRankSum=0.000;DP=495;ExcessHet=3.0103;FS=3.408;MLEAC=1;MLEAF=0.500;MQ=59.30;MQRankSum=-17.197;QD=1.17;ReadPosRankSum=1.517;SOR=0.401;set=HC	GT:AD:AF:DP	0/1:446,48:0.10:494
chr7	142143681	.	A	T	422.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.894;ClippingRankSum=0.000;DP=526;ExcessHet=3.0103;FS=2.276;MLEAC=1;MLEAF=0.500;MQ=59.36;MQRankSum=-17.851;QD=0.81;ReadPosRankSum=-0.041;SOR=0.426;set=HC	GT:AD:AF:DP	0/1:479,46:0.09:525
chr7	142143684	.	C	T	281.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.503;ClippingRankSum=0.000;DP=553;ExcessHet=3.0103;FS=2.268;MLEAC=1;MLEAF=0.500;MQ=59.42;MQRankSum=-18.187;QD=0.51;ReadPosRankSum=-0.640;SOR=0.402;set=HC	GT:AD:AF:DP	0/1:506,45:0.08:551
chr7	142143687	.	A	G	239.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.612;ClippingRankSum=0.000;DP=585;ExcessHet=3.0103;FS=1.084;MLEAC=1;MLEAF=0.500;MQ=59.45;MQRankSum=-18.728;QD=0.41;ReadPosRankSum=-1.410;SOR=0.459;set=HC	GT:AD:AF:DP	0/1:538,45:0.08:583
chr7	142143804	rs73742281	A	C	22399.77	.	AC=2;AF=1.00;AN=2;DB;DP=794;set=Intersection	GT:AD:AF:DP	1/1:0,790:1.00:790
chr7	142143879	rs376540425	A	T	1305.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.058;ClippingRankSum=0.000;DB;DP=580;ExcessHet=3.0103;FS=31.518;MLEAC=1;MLEAF=0.500;MQ=58.62;MQRankSum=-21.536;QD=2.28;ReadPosRankSum=-5.982;SOR=2.415;set=HC	GT:AD:AF:DP	0/1:469,104:0.18:573
chr7	142143906	.	GT	CC	7378.77	.	AC=1;AF=0.500;AN=2;DP=629;JOINED;set=Intersection	GT:AD:AF:DP	0/1:423,204:0.33:627
chr7	142143941	rs368607254	T	C	15263.77	.	AC=1;AF=0.500;AN=2;DB;DP=862;set=Intersection	GT:AD:AF:DP	0/1:467,393:0.46:860
chr7	142143953	rs371156869	G	A	16758.77	.	AC=1;AF=0.500;AN=2;DB;DP=975;set=Intersection	GT:AD:AF:DP	0/1:503,469:0.48:972
chr7	142143993	rs374220425	C	A	24275.77	.	AC=1;AF=0.500;AN=2;DB;DP=1158;set=Intersection	GT:AD:AF:DP	0/1:527,627:0.54:1154
chr7	142144004	rs368631399	T	A	24566.77	.	AC=1;AF=0.500;AN=2;DB;DP=1146;set=Intersection	GT:AD:AF:DP	0/1:524,619:0.54:1143
chr7	142144022	rs371600923	T	C	22822.77	.	AC=1;AF=0.500;AN=2;DB;DP=1096;set=Intersection	GT:AD:AF:DP	0/1:503,587:0.54:1090
chr7	142144059	.	A	C	4137.77	.	AC=1;AF=0.500;AN=2;DP=631;set=Intersection	GT:AD:AF:DP	0/1:399,223:0.36:622
chr7	142148850	.	G	A	1046.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.653;ClippingRankSum=0.000;DP=186;ExcessHet=3.0103;FS=6.746;MLEAC=1;MLEAF=0.500;MQ=57.10;MQRankSum=-13.456;QD=5.66;ReadPosRankSum=0.441;SOR=0.258;set=HC	GT:AD:AF:DP	0/1:148,37:0.20:185
chr7	142148878	rs370978147	T	C	1164.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.100;ClippingRankSum=0.000;DB;DP=293;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.88;MQRankSum=-16.980;QD=3.99;ReadPosRankSum=2.214;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:247,45:0.15:292
chr7	142148881	rs374566766	C	A	1198.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.058;ClippingRankSum=0.000;DB;DP=309;ExcessHet=3.0103;FS=1.309;MLEAC=1;MLEAF=0.500;MQ=58.10;MQRankSum=-15.972;QD=3.89;ReadPosRankSum=1.482;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:258,50:0.16:308
chr7	142149160	rs17217	T	G	3402.77	.	AC=1;AF=0.500;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	0/1:219,165:0.43:384
chr7	142149349	rs140504979	A	C	5997.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr7	142162001	rs73742263	A	C	23712.77	.	AC=2;AF=1.00;AN=2;DB;DP=864;set=Intersection	GT:AD:AF:DP	1/1:0,858:1.00:858
chr7	142162050	rs71878	A	G	9658.77	.	AC=1;AF=0.500;AN=2;DB;DP=874;set=Intersection	GT:AD:AF:DP	0/1:413,454:0.52:867
chr7	142162148	rs71877	C	T	5813.77	.	AC=1;AF=0.500;AN=2;DB;DP=533;set=Intersection	GT:AD:AF:DP	0/1:268,257:0.49:525
chr7	142162278	rs361443	C	T	5129.77	.	AC=1;AF=0.500;AN=2;DB;DP=511;set=Intersection	GT:AD:AF:DP	0/1:251,257:0.51:508
chr7	142162306	rs361442	A	G	4005.77	.	AC=1;AF=0.500;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	0/1:199,194:0.49:393
chr7	142162311	rs199883829	C	A	3946.77	.	AC=1;AF=0.500;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	0/1:194,186:0.49:380
chr7	142168348	.	G	A	1498.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.086;ClippingRankSum=0.000;DP=269;ExcessHet=3.0103;FS=20.223;MLEAC=1;MLEAF=0.500;MQ=57.04;MQRankSum=-16.034;QD=5.59;ReadPosRankSum=1.064;SOR=2.128;set=HC	GT:AD:AF:DP	0/1:216,52:0.19:268
chr7	142168351	.	T	C	1618.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.624;ClippingRankSum=0.000;DP=277;ExcessHet=3.0103;FS=17.552;MLEAC=1;MLEAF=0.500;MQ=57.13;MQRankSum=-15.905;QD=5.87;ReadPosRankSum=0.902;SOR=1.928;set=HC	GT:AD:AF:DP	0/1:222,54:0.20:276
chr7	142168362	.	A	T	2205.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.452;ClippingRankSum=0.000;DP=347;ExcessHet=3.0103;FS=28.823;MLEAC=1;MLEAF=0.500;MQ=57.60;MQRankSum=-16.695;QD=6.41;ReadPosRankSum=1.164;SOR=2.166;set=HC	GT:AD:AF:DP	0/1:277,67:0.19:344
chr7	142168365	.	C	T	2249.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.124;ClippingRankSum=0.000;DP=368;ExcessHet=3.0103;FS=37.952;MLEAC=1;MLEAF=0.500;MQ=57.71;MQRankSum=-16.392;QD=6.16;ReadPosRankSum=0.394;SOR=2.434;set=HC	GT:AD:AF:DP	0/1:290,75:0.21:365
chr7	142168371	.	C	T	2297.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.453;ClippingRankSum=0.000;DP=407;ExcessHet=3.0103;FS=23.159;MLEAC=1;MLEAF=0.500;MQ=57.94;MQRankSum=-16.512;QD=5.69;ReadPosRankSum=1.241;SOR=2.247;set=HC	GT:AD:AF:DP	0/1:323,81:0.20:404
chr7	142168414	rs374005717	G	C	1946.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.645;ClippingRankSum=0.000;DB;DP=631;ExcessHet=3.0103;FS=23.109;MLEAC=1;MLEAF=0.500;MQ=58.50;MQRankSum=-15.790;QD=3.11;ReadPosRankSum=-1.003;SOR=2.223;set=HC	GT:AD:AF:DP	0/1:480,146:0.23:626
chr7	142168429	rs55634899	A	G	13401.77	.	AC=1;AF=0.500;AN=2;DB;DP=685;set=Intersection	GT:AD:AF:DP	0/1:92,588:0.86:680
chr7	142168452	rs361355	C	A	28503.77	.	AC=2;AF=1.00;AN=2;DB;DP=716;set=Intersection	GT:AD:AF:DP	1/1:1,707:1.00:708
chr7	142168662	rs73742240	CG	TC	13087.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;JOINED;set=Intersection	GT:AD:AF:DP	1/1:5,304:0.98:309
chr7	142168818	.	C	T	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.315;ClippingRankSum=0.000;DP=238;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.12;MQRankSum=-8.625;QD=0.14;ReadPosRankSum=3.030;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:217,18:0.08:235
chr7	142168819	rs361350	G	A	2333.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.033;ClippingRankSum=0.000;DB;DP=233;ExcessHet=3.0103;FS=3.786;MLEAC=1;MLEAF=0.500;MQ=58.08;MQRankSum=-0.390;QD=10.15;ReadPosRankSum=-0.315;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:120,110:0.48:230
chr7	142168825	.	C	A	131.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.693;ClippingRankSum=0.000;DP=212;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.88;MQRankSum=-8.041;QD=0.63;ReadPosRankSum=3.411;SOR=0.566;set=HC	GT:AD:AF:DP	0/1:191,18:0.09:209
chr7	142168835	.	CA	TG	299.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.976;ClippingRankSum=0.000;DP=189;ExcessHet=3.0103;FS=2.173;JOINED;MLEAC=1;MLEAF=0.500;MQ=57.62;MQRankSum=-7.483;QD=1.61;ReadPosRankSum=3.942;SOR=0.434;set=HC	GT:AD:AF:DP	0/1:168,18:0.10:186
chr7	142168839	.	G	T	317.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.266;ClippingRankSum=0.000;DP=181;ExcessHet=3.0103;FS=2.114;MLEAC=1;MLEAF=0.500;MQ=57.51;MQRankSum=-6.681;QD=1.79;ReadPosRankSum=2.703;SOR=0.395;set=HC	GT:AD:AF:DP	0/1:158,20:0.11:178
chr7	142168856	rs73742239	C	G	3432.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:20,131:0.87:151
chr7	142168862	.	A	G	444.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.157;ClippingRankSum=0.000;DP=141;ExcessHet=3.0103;FS=7.622;MLEAC=1;MLEAF=0.500;MQ=56.79;MQRankSum=-5.578;QD=3.20;ReadPosRankSum=1.926;SOR=0.204;set=HC	GT:AD:AF:DP	0/1:119,20:0.14:139
chr7	142176366	rs200011067	C	T	6452.77	.	AC=1;AF=0.500;AN=2;DB;DP=613;set=Intersection	GT:AD:AF:DP	0/1:312,300:0.49:612
chr7	142176378	rs361393	A	G	18210.77	.	AC=2;AF=1.00;AN=2;DB;DP=695;set=Intersection	GT:AD:AF:DP	1/1:1,691:1.00:692
chr7	142176404	rs55996663	C	T	8178.77	.	AC=1;AF=0.500;AN=2;DB;DP=802;set=Intersection	GT:AD:AF:DP	0/1:403,396:0.50:799
chr7	142180578	.	G	A	1296.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=14.042;ClippingRankSum=0.000;DP=1279;ExcessHet=3.0103;FS=14.196;MLEAC=1;MLEAF=0.500;MQ=58.65;MQRankSum=-35.620;QD=1.02;ReadPosRankSum=-1.334;SOR=2.443;set=HC	GT:AD:AF:DP	0/1:1159,114:0.09:1273
chr7	142180584	rs373875376	TCC	T	1697.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.885;ClippingRankSum=0.000;DB;DP=1348;ExcessHet=3.0103;FS=14.205;MLEAC=1;MLEAF=0.500;MQ=58.71;MQRankSum=-36.568;QD=1.27;ReadPosRankSum=-1.767;SOR=2.488;set=HC	GT:AD:AF:DP	0/1:1217,125:0.09:1342
chr7	142180591	.	TGG	T	2287.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=11.865;ClippingRankSum=0.000;DP=1398;ExcessHet=3.0103;FS=18.775;MLEAC=1;MLEAF=0.500;MQ=58.73;MQRankSum=-37.238;QD=1.64;ReadPosRankSum=-6.122;SOR=2.558;set=HC	GT:AD:AF:DP	0/1:1258,134:0.10:1392
chr7	142180593	.	G	GTTTT	2311.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=13.663;ClippingRankSum=0.000;DP=1389;ExcessHet=3.0103;FS=18.775;MLEAC=1;MLEAF=0.500;MQ=58.72;MQRankSum=-37.117;QD=1.67;ReadPosRankSum=-5.672;SOR=2.554;set=HC	GT:AD:AF:DP	0/1:1249,134:0.10:1383
chr7	142180596	.	G	A	2336.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.035;ClippingRankSum=0.000;DP=1417;ExcessHet=3.0103;FS=15.149;MLEAC=1;MLEAF=0.500;MQ=58.70;MQRankSum=-37.338;QD=1.66;ReadPosRankSum=-3.189;SOR=2.527;set=HC	GT:AD:AF:DP	0/1:1261,150:0.11:1411
chr7	142180618	.	TG	CA	7575.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.106;ClippingRankSum=0.000;DP=1596;ExcessHet=3.0103;FS=5.778;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.64;MQRankSum=-31.667;QD=4.76;ReadPosRankSum=-8.236;SOR=1.226;set=HC	GT:AD:AF:DP	0/1:1318,272:0.17:1590
chr7	142180625	.	T	C	8190.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.978;ClippingRankSum=0.000;DP=1603;ExcessHet=3.0103;FS=5.850;MLEAC=1;MLEAF=0.500;MQ=58.68;MQRankSum=-30.604;QD=5.13;ReadPosRankSum=-6.461;SOR=1.220;set=HC	GT:AD:AF:DP	0/1:1311,286:0.18:1597
chr7	142180633	.	G	T	9209.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.686;ClippingRankSum=0.000;DP=1591;ExcessHet=3.0103;FS=5.547;MLEAC=1;MLEAF=0.500;MQ=58.72;MQRankSum=-29.234;QD=5.81;ReadPosRankSum=-4.366;SOR=1.183;set=HC	GT:AD:AF:DP	0/1:1282,303:0.19:1585
chr7	142180635	.	T	G	9417.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.815;ClippingRankSum=0.000;DP=1575;ExcessHet=3.0103;FS=5.547;MLEAC=1;MLEAF=0.500;MQ=58.73;MQRankSum=-28.570;QD=6.00;ReadPosRankSum=-4.330;SOR=1.159;set=HC	GT:AD:AF:DP	0/1:1259,310:0.20:1569
chr7	142180640	.	GA	TG	9681.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.092;ClippingRankSum=0.000;DP=1570;ExcessHet=3.0103;FS=5.437;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.75;MQRankSum=-28.067;QD=6.19;ReadPosRankSum=-2.407;SOR=1.073;set=HC	GT:AD:AF:DP	0/1:1246,318:0.20:1564
chr7	142180646	.	AG	CT	9920.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.446;ClippingRankSum=0.000;DP=1536;ExcessHet=3.0103;FS=5.337;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.81;MQRankSum=-26.884;QD=6.48;ReadPosRankSum=-0.160;SOR=1.007;set=HC	GT:AD:AF:DP	0/1:1207,324:0.21:1531
chr7	142180704	rs368420989	G	T	8946.77	.	AC=1;AF=0.500;AN=2;DB;DP=1248;set=Intersection	GT:AD:AF:DP	0/1:771,470:0.38:1241
chr7	142180737	rs372013265	T	A	7638.77	.	AC=1;AF=0.500;AN=2;DB;DP=944;set=Intersection	GT:AD:AF:DP	0/1:575,363:0.39:938
chr7	142180770	rs375278683	T	C	3847.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.322;ClippingRankSum=0.000;DB;DP=764;ExcessHet=3.0103;FS=2.769;MLEAC=1;MLEAF=0.500;MQ=58.24;MQRankSum=-15.857;QD=5.06;ReadPosRankSum=-0.736;SOR=0.924;set=HC	GT:AD:AF:DP	0/1:542,218:0.29:760
chr7	142197606	rs373222208	T	C	3660.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.951;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=42.901;MLEAC=1;MLEAF=0.500;MQ=58.55;MQRankSum=-5.235;QD=17.60;ReadPosRankSum=1.666;SOR=0.291;set=HC	GT:AD:AF:DP	0/1:109,99:0.48:208
chr7	142197613	rs376535639	T	C	3609.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.834;ClippingRankSum=0.000;DB;DP=211;ExcessHet=3.0103;FS=36.862;MLEAC=1;MLEAF=0.500;MQ=58.48;MQRankSum=-5.542;QD=17.27;ReadPosRankSum=1.361;SOR=0.318;set=HC	GT:AD:AF:DP	0/1:114,95:0.45:209
chr7	142197620	rs17281	C	T	966.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.386;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=21.939;MLEAC=1;MLEAF=0.500;MQ=58.50;MQRankSum=3.032;QD=4.56;ReadPosRankSum=0.117;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:156,56:0.26:212
chr7	142197770	.	A	ATT	431.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.003;ClippingRankSum=0.000;DP=441;ExcessHet=3.0103;FS=0.937;MLEAC=1;MLEAF=0.500;MQ=59.46;MQRankSum=-11.064;QD=0.99;ReadPosRankSum=-2.352;SOR=0.891;set=HC	GT:AD:AF:DP	0/1:398,40:0.09:438
chr7	142197771	.	GCA	G	539.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.572;ClippingRankSum=0.000;DP=449;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.43;MQRankSum=-11.484;QD=1.21;ReadPosRankSum=-1.191;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:405,41:0.09:446
chr7	142197782	rs377242129	T	A	821.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.390;ClippingRankSum=0.000;DB;DP=455;ExcessHet=3.0103;FS=0.888;MLEAC=1;MLEAF=0.500;MQ=59.40;MQRankSum=-11.011;QD=1.82;ReadPosRankSum=-1.233;SOR=0.832;set=HC	GT:AD:AF:DP	0/1:404,48:0.11:452
chr7	142197807	rs369644106	CT	GG	1094.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.092;ClippingRankSum=0.000;DB;DP=455;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.31;MQRankSum=-11.510;QD=2.42;ReadPosRankSum=1.358;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:397,56:0.12:453
chr7	142197812	.	CC	TT	1150.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.337;ClippingRankSum=0.000;DP=458;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.31;MQRankSum=-11.552;QD=2.52;ReadPosRankSum=1.966;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:400,56:0.12:456
chr7	142197835	rs17280	C	T	13791.77	.	AC=2;AF=1.00;AN=2;DB;DP=460;set=Intersection	GT:AD:AF:DP	1/1:0,458:1.00:458
chr7	142197845	rs372935433	GG	AA	1442.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.638;ClippingRankSum=0.000;DB;DP=480;ExcessHet=3.0103;FS=3.916;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.26;MQRankSum=-13.042;QD=3.02;ReadPosRankSum=-0.057;SOR=0.999;set=HC	GT:AD:AF:DP	0/1:414,64:0.13:478
chr7	142197848	rs368955078	A	C	1505.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.514;ClippingRankSum=0.000;DB;DP=484;ExcessHet=3.0103;FS=3.916;MLEAC=1;MLEAF=0.500;MQ=59.25;MQRankSum=-13.256;QD=3.12;ReadPosRankSum=-0.492;SOR=1.038;set=HC	GT:AD:AF:DP	0/1:417,65:0.13:482
chr7	142197861	rs373311950	G	A	1433.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.291;ClippingRankSum=0.000;DB;DP=481;ExcessHet=3.0103;FS=6.854;MLEAC=1;MLEAF=0.500;MQ=59.25;MQRankSum=-13.477;QD=2.99;ReadPosRankSum=-2.050;SOR=1.174;set=HC	GT:AD:AF:DP	0/1:414,65:0.14:479
chr7	142197871	.	A	T	1286.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.986;ClippingRankSum=0.000;DP=445;ExcessHet=3.0103;FS=3.020;MLEAC=1;MLEAF=0.500;MQ=59.28;MQRankSum=-14.544;QD=2.90;ReadPosRankSum=-0.595;SOR=0.767;set=HC	GT:AD:AF:DP	0/1:392,51:0.12:443
chr7	142197873	.	A	G	932.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.870;ClippingRankSum=0.000;DP=451;ExcessHet=3.0103;FS=3.007;MLEAC=1;MLEAF=0.500;MQ=59.33;MQRankSum=-14.348;QD=2.08;ReadPosRankSum=-0.462;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:398,51:0.11:449
chr7	142197874	.	A	G	926.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.905;ClippingRankSum=0.000;DP=450;ExcessHet=3.0103;FS=3.020;MLEAC=1;MLEAF=0.500;MQ=59.33;MQRankSum=-14.331;QD=2.07;ReadPosRankSum=-0.498;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:397,51:0.11:448
chr7	142197880	.	AAGAC	A	812.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.066;ClippingRankSum=0.000;DP=454;ExcessHet=3.0103;FS=4.420;MLEAC=1;MLEAF=0.500;MQ=59.33;MQRankSum=-14.727;QD=1.80;ReadPosRankSum=-0.147;SOR=0.900;set=HC	GT:AD:AF:DP	0/1:403,49:0.11:452
chr7	142197892	.	G	T	989.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.701;ClippingRankSum=0.000;DP=438;ExcessHet=3.0103;FS=7.593;MLEAC=1;MLEAF=0.500;MQ=59.29;MQRankSum=-14.615;QD=2.27;ReadPosRankSum=-0.090;SOR=1.088;set=HC	GT:AD:AF:DP	0/1:388,48:0.11:436
chr7	142197897	rs17279	C	T	5495.77	.	AC=1;AF=0.500;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	0/1:219,220:0.50:439
chr7	142197910	.	T	C	1170.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.859;ClippingRankSum=0.000;DP=429;ExcessHet=3.0103;FS=18.186;MLEAC=1;MLEAF=0.500;MQ=59.20;MQRankSum=-14.376;QD=2.74;ReadPosRankSum=-1.823;SOR=2.108;set=HC	GT:AD:AF:DP	0/1:374,54:0.13:428
chr7	142197912	.	G	A	1071.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.854;ClippingRankSum=0.000;DP=420;ExcessHet=3.0103;FS=18.146;MLEAC=1;MLEAF=0.500;MQ=59.23;MQRankSum=-14.541;QD=2.55;ReadPosRankSum=-1.558;SOR=2.024;set=HC	GT:AD:AF:DP	0/1:368,52:0.12:420
chr7	142197913	.	A	G	1038.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=10.339;ClippingRankSum=0.000;DP=413;ExcessHet=3.0103;FS=18.030;MLEAC=1;MLEAF=0.500;MQ=59.22;MQRankSum=-14.410;QD=2.52;ReadPosRankSum=-1.761;SOR=2.027;set=HC	GT:AD:AF:DP	0/1:361,52:0.13:413
chr7	142197921	.	A	ACT	915.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.422;ClippingRankSum=0.000;DP=406;ExcessHet=3.0103;FS=21.571;MLEAC=1;MLEAF=0.500;MQ=59.16;MQRankSum=-14.770;QD=2.26;ReadPosRankSum=-1.161;SOR=2.431;set=HC	GT:AD:AF:DP	0/1:357,49:0.12:406
chr7	142197923	.	A	G	1026.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.046;ClippingRankSum=0.000;DP=398;ExcessHet=3.0103;FS=44.886;MLEAC=1;MLEAF=0.500;MQ=59.19;MQRankSum=-14.855;QD=2.58;ReadPosRankSum=-0.763;SOR=2.729;set=HC	GT:AD:AF:DP	0/1:352,46:0.12:398
chr7	142197928	.	TCC	T	915.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=6.243;ClippingRankSum=0.000;DP=396;ExcessHet=3.0103;FS=43.743;MLEAC=1;MLEAF=0.500;MQ=59.13;MQRankSum=-15.027;QD=2.31;ReadPosRankSum=-1.389;SOR=2.594;set=HC	GT:AD:AF:DP	0/1:348,48:0.12:396
chr7	142197931	.	A	T	945.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=8.726;ClippingRankSum=0.000;DP=391;ExcessHet=3.0103;FS=43.766;MLEAC=1;MLEAF=0.500;MQ=59.12;MQRankSum=-14.926;QD=2.42;ReadPosRankSum=-1.298;SOR=2.595;set=HC	GT:AD:AF:DP	0/1:343,48:0.12:391
chr7	142197935	.	T	TGAG	1048.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.552;ClippingRankSum=0.000;DP=385;ExcessHet=3.0103;FS=43.837;MLEAC=1;MLEAF=0.500;MQ=59.11;MQRankSum=-14.803;QD=2.72;ReadPosRankSum=-1.389;SOR=2.594;set=HC	GT:AD:AF:DP	0/1:337,48:0.12:385
chr7	142197961	.	TGC	T	1875.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.374;ClippingRankSum=0.000;DP=362;ExcessHet=3.0103;FS=1.066;MLEAC=1;MLEAF=0.500;MQ=58.61;MQRankSum=-14.520;QD=5.28;ReadPosRankSum=-2.188;SOR=0.795;set=HC	GT:AD:AF:DP	0/1:290,65:0.18:355
chr7	142197965	.	C	CCA	1881.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.640;ClippingRankSum=0.000;DP=350;ExcessHet=3.0103;FS=1.663;MLEAC=1;MLEAF=0.500;MQ=58.47;MQRankSum=-14.516;QD=5.38;ReadPosRankSum=-2.256;SOR=0.821;set=HC	GT:AD:AF:DP	0/1:283,67:0.19:350
chr7	142197978	.	G	A	1774.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.470;ClippingRankSum=0.000;DP=324;ExcessHet=3.0103;FS=1.772;MLEAC=1;MLEAF=0.500;MQ=58.48;MQRankSum=-13.767;QD=5.48;ReadPosRankSum=0.161;SOR=0.864;set=HC	GT:AD:AF:DP	0/1:263,61:0.19:324
chr7	142197983	rs369385273	G	A	1735.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.001;ClippingRankSum=0.000;DB;DP=303;ExcessHet=3.0103;FS=2.534;MLEAC=1;MLEAF=0.500;MQ=58.38;MQRankSum=-13.400;QD=5.73;ReadPosRankSum=0.707;SOR=0.901;set=HC	GT:AD:AF:DP	0/1:243,60:0.20:303
chr7	142197986	rs148941368	T	C	9421.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr7	142198003	rs377018956	G	A	1510.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.674;ClippingRankSum=0.000;DB;DP=261;ExcessHet=3.0103;FS=6.945;MLEAC=1;MLEAF=0.500;MQ=58.22;MQRankSum=-12.678;QD=5.79;ReadPosRankSum=1.274;SOR=1.188;set=HC	GT:AD:AF:DP	0/1:209,52:0.20:261
chr7	142198022	.	A	C	1240.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.877;ClippingRankSum=0.000;DP=223;ExcessHet=3.0103;FS=5.303;MLEAC=1;MLEAF=0.500;MQ=57.97;MQRankSum=-12.217;QD=5.67;ReadPosRankSum=0.729;SOR=1.123;set=HC	GT:AD:AF:DP	0/1:173,46:0.21:219
chr7	142198030	.	G	A	1186.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.792;ClippingRankSum=0.000;DP=186;ExcessHet=3.0103;FS=6.602;MLEAC=1;MLEAF=0.500;MQ=58.17;MQRankSum=-11.017;QD=6.52;ReadPosRankSum=2.201;SOR=1.351;set=HC	GT:AD:AF:DP	0/1:146,36:0.20:182
chr7	142198040	.	C	A	962.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.762;ClippingRankSum=0.000;DP=162;ExcessHet=3.0103;FS=4.310;MLEAC=1;MLEAF=0.500;MQ=57.99;MQRankSum=-10.274;QD=6.09;ReadPosRankSum=1.313;SOR=1.199;set=HC	GT:AD:AF:DP	0/1:125,33:0.21:158
chr7	142198041	.	A	G	971.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.363;ClippingRankSum=0.000;DP=157;ExcessHet=3.0103;FS=3.078;MLEAC=1;MLEAF=0.500;MQ=57.92;MQRankSum=-10.129;QD=6.31;ReadPosRankSum=0.930;SOR=1.091;set=HC	GT:AD:AF:DP	0/1:121,33:0.21:154
chr7	142206473	rs11764626	G	A	1905.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:86,87:0.50:173
chr7	142206606	rs17250	A	G	4778.77	.	AC=1;AF=0.500;AN=2;DB;DP=470;set=Intersection	GT:AD:AF:DP	0/1:227,238:0.51:465
chr7	142211193	rs6977669	C	T	1826.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:92,90:0.49:182
chr7	142223845	.	T	C	80.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.124;ClippingRankSum=0.000;DP=152;ExcessHet=3.0103;FS=0.958;MLEAC=1;MLEAF=0.500;MQ=58.24;MQRankSum=-12.161;QD=0.54;ReadPosRankSum=-2.440;SOR=0.877;set=HC	GT:AD:AF:DP	0/1:130,20:0.13:150
chr7	142231625	rs17249	C	A	2833.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.645;ClippingRankSum=0.000;DB;DP=302;ExcessHet=3.0103;FS=2.537;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.70;ReadPosRankSum=-0.196;SOR=0.552;set=HC	GT:AD:AF:DP	0/1:151,141:0.48:292
chr7	142231668	.	G	A	1248	.	AC=1;AF=0.500;AN=2;BRF=0.51;FR=0.5000;HP=2;HapScore=1;MGOF=87;MMLQ=21;MQ=58.36;NF=62;NR=39;PP=1248;QD=12.7007050747;SC=TAGAGACACTGTAGCCATCTG;SbPval=0.85;Source=Platypus;TC=328;TCF=175;TCR=153;TR=101;WE=142231676;WS=142231658;set=Platypus	GT:AD:AF:DP	1/0:227,101:0.31:328
chr7	142231694	.	T	C	6886.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.240;ClippingRankSum=0.000;DP=532;ExcessHet=3.0103;FS=5.257;MLEAC=1;MLEAF=0.500;MQ=58.92;MQRankSum=-9.584;QD=13.07;ReadPosRankSum=-1.874;SOR=0.860;set=HC	GT:AD:AF:DP	0/1:338,189:0.36:527
chr7	142231698	.	G	A	6847.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.113;ClippingRankSum=0.000;DP=531;ExcessHet=3.0103;FS=3.382;MLEAC=1;MLEAF=0.500;MQ=59.16;MQRankSum=-8.841;QD=13.02;ReadPosRankSum=-1.225;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:339,187:0.36:526
chr7	142231701	rs17248	G	T	7103.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.180;ClippingRankSum=0.000;DB;DP=530;ExcessHet=3.0103;FS=3.380;MLEAC=1;MLEAF=0.500;MQ=59.16;MQRankSum=-8.684;QD=13.53;ReadPosRankSum=-1.625;SOR=0.750;set=HC	GT:AD:AF:DP	0/1:334,191:0.36:525
chr7	142231703	.	G	T	7064.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.613;ClippingRankSum=0.000;DP=534;ExcessHet=3.0103;FS=2.557;MLEAC=1;MLEAF=0.500;MQ=59.14;MQRankSum=-8.778;QD=13.35;ReadPosRankSum=-1.575;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:336,193:0.36:529
chr7	142231740	rs372096379	T	C	3838.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.404;ClippingRankSum=0.000;DB;DP=472;ExcessHet=3.0103;FS=0.551;MLEAC=1;MLEAF=0.500;MQ=59.62;MQRankSum=-5.271;QD=8.29;ReadPosRankSum=0.934;SOR=0.640;set=HC	GT:AD:AF:DP	0/1:305,158:0.34:463
chr7	142231744	rs376782927	A	G	4983.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.862;ClippingRankSum=0.000;DB;DP=462;ExcessHet=3.0103;FS=0.551;MLEAC=1;MLEAF=0.500;MQ=59.64;MQRankSum=-5.288;QD=10.88;ReadPosRankSum=0.756;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:301,157:0.34:458
chr7	142231762	.	A	T	3453.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.860;ClippingRankSum=0.000;DP=384;ExcessHet=3.0103;FS=10.718;MLEAC=1;MLEAF=0.500;MQ=59.57;MQRankSum=-5.968;QD=9.16;ReadPosRankSum=2.154;SOR=1.178;set=HC	GT:AD:AF:DP	0/1:268,109:0.29:377
chr7	142231769	.	T	A	3228.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.441;ClippingRankSum=0.000;DP=352;ExcessHet=3.0103;FS=18.764;MLEAC=1;MLEAF=0.500;MQ=59.53;MQRankSum=-6.324;QD=9.25;ReadPosRankSum=2.837;SOR=1.524;set=HC	GT:AD:AF:DP	0/1:256,93:0.27:349
chr7	142231771	.	TT	CG	3062.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.820;ClippingRankSum=0.000;DP=341;ExcessHet=3.0103;FS=20.634;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.51;MQRankSum=-6.283;QD=9.06;ReadPosRankSum=2.327;SOR=1.582;set=HC	GT:AD:AF:DP	0/1:247,91:0.27:338
chr7	142231780	.	CA	TC	2854.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.116;ClippingRankSum=0.000;DP=305;ExcessHet=3.0103;FS=13.180;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.46;MQRankSum=-6.209;QD=9.45;ReadPosRankSum=0.330;SOR=1.368;set=HC	GT:AD:AF:DP	0/1:219,83:0.27:302
chr7	142231793	.	A	AT	2482.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.865;ClippingRankSum=0.000;DP=286;ExcessHet=3.0103;FS=7.671;MLEAC=1;MLEAF=0.500;MQ=59.42;MQRankSum=-6.375;QD=8.77;ReadPosRankSum=-1.551;SOR=1.152;set=HC	GT:AD:AF:DP	0/1:208,75:0.27:283
chr7	142231795	.	G	T	2488.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.947;ClippingRankSum=0.000;DP=283;ExcessHet=3.0103;FS=6.670;MLEAC=1;MLEAF=0.500;MQ=59.41;MQRankSum=-6.345;QD=8.86;ReadPosRankSum=-2.379;SOR=1.121;set=HC	GT:AD:AF:DP	0/1:206,75:0.27:281
chr7	142231796	.	CCA	C	2470.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=5.968;ClippingRankSum=0.000;DP=281;ExcessHet=3.0103;FS=5.722;MLEAC=1;MLEAF=0.500;MQ=59.41;MQRankSum=-6.374;QD=8.86;ReadPosRankSum=-2.529;SOR=1.080;set=HC	GT:AD:AF:DP	0/1:205,74:0.27:279
chr7	142231800	.	G	GA	2422.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.161;ClippingRankSum=0.000;DP=271;ExcessHet=3.0103;FS=3.194;MLEAC=1;MLEAF=0.500;MQ=59.39;MQRankSum=-6.400;QD=9.01;ReadPosRankSum=-2.497;SOR=0.947;set=HC	GT:AD:AF:DP	0/1:198,71:0.26:269
chr7	142231805	.	C	CTG	2173.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=5.255;ClippingRankSum=0.000;DP=257;ExcessHet=3.0103;FS=1.785;MLEAC=1;MLEAF=0.500;MQ=59.35;MQRankSum=-6.494;QD=8.52;ReadPosRankSum=-3.705;SOR=0.857;set=HC	GT:AD:AF:DP	0/1:189,66:0.26:255
chr7	142231806	.	C	G	2191.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.888;ClippingRankSum=0.000;DP=245;ExcessHet=3.0103;FS=3.491;MLEAC=1;MLEAF=0.500;MQ=59.34;MQRankSum=-6.599;QD=9.02;ReadPosRankSum=-3.694;SOR=0.954;set=HC	GT:AD:AF:DP	0/1:185,58:0.24:243
chr7	142231808	.	GCC	G	1825.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.642;ClippingRankSum=0.000;DP=242;ExcessHet=3.0103;FS=3.581;MLEAC=1;MLEAF=0.500;MQ=59.33;MQRankSum=-6.700;QD=7.61;ReadPosRankSum=-3.993;SOR=0.990;set=HC	GT:AD:AF:DP	0/1:184,56:0.23:240
chr7	142231826	.	T	C	891.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.001;ClippingRankSum=0.000;DP=192;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.10;MQRankSum=-7.709;QD=4.69;ReadPosRankSum=-4.501;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:159,31:0.16:190
chr7	142232163	rs144354683	T	C	371.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr7	142239679	rs17208	C	G	1988.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:101,91:0.47:192
chr7	142239946	rs17209	T	C	1162.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:57,53:0.48:110
chr7	142242352	rs2734112	C	T	5488.77	.	AC=1;AF=0.500;AN=2;DB;DP=472;set=Intersection	GT:AD:AF:DP	0/1:206,263:0.56:469
chr7	142242670	rs17219	T	G	13343.77	.	AC=2;AF=1.00;AN=2;DB;DP=504;set=Intersection	GT:AD:AF:DP	1/1:0,499:1.00:499
chr7	142247125	rs361365	A	G	5814.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.502;ClippingRankSum=0.000;DB;DP=349;ExcessHet=3.0103;FS=4.213;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.10;ReadPosRankSum=0.605;SOR=0.509;set=HC	GT:AD:AF:DP	0/1:188,152:0.45:340
chr7	142247133	rs361364	A	G	5906.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.176;ClippingRankSum=0.000;DB;DP=367;ExcessHet=3.0103;FS=3.448;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.55;ReadPosRankSum=-0.106;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:197,160:0.45:357
chr7	142247134	rs361363	T	C	12585.77	.	AC=2;AF=1.00;AN=2;DB;DP=371;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.86;SOR=0.987;set=HC	GT:AD:AF:DP	1/1:0,361:1.00:361
chr7	142247148	rs361361	C	T	3717.77	.	AC=1;AF=0.500;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	0/1:237,181:0.43:418
chr7	142247213	rs361360	G	T	4435.77	.	AC=1;AF=0.500;AN=2;DB;DP=535;set=Intersection	GT:AD:AF:DP	0/1:303,220:0.42:523
chr7	142247347	rs361359	A	C	11699.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.173;ClippingRankSum=0.000;DB;DP=605;ExcessHet=3.0103;FS=6.140;MLEAC=1;MLEAF=0.500;MQ=59.68;MQRankSum=-3.661;QD=19.56;ReadPosRankSum=2.387;SOR=1.105;set=HC	GT:AD:AF:DP	0/1:243,355:0.59:598
chr7	142247348	rs371674308	T	C	4053.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.919;ClippingRankSum=0.000;DB;DP=606;ExcessHet=3.0103;FS=10.058;MLEAC=1;MLEAF=0.500;MQ=59.68;MQRankSum=-6.142;QD=6.79;ReadPosRankSum=3.884;SOR=1.338;set=HC	GT:AD:AF:DP	0/1:393,204:0.34:597
chr7	142247417	.	AC	A	2964	.	AC=1;AF=0.500;AN=2;BRF=0.45;FR=0.5000;HP=2;HapScore=1;MGOF=53;MMLQ=28;MQ=58.2;NF=16;NR=67;PP=2964;QD=20;SC=CTGCGGAGACACAAGTTGAGA;SbPval=0.66;Source=Platypus;TC=228;TCF=49;TCR=179;TR=83;WE=142247441;WS=142247386;set=Platypus	GT:AD:AF:DP	0/1:145,83:0.36:228
chr7	142247455	rs57923366	T	TCACACA	2621.73	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:173,81:0.32:254
chr7	142247529	.	GGC	G	542.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.905;ClippingRankSum=0.000;DP=223;ExcessHet=3.0103;FS=2.819;MLEAC=1;MLEAF=0.500;MQ=58.57;MQRankSum=-10.843;QD=2.48;ReadPosRankSum=-2.064;SOR=0.439;set=HC	GT:AD:AF:DP	0/1:194,25:0.11:219
chr7	142247535	.	G	GAA	641.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.603;ClippingRankSum=0.000;DP=231;ExcessHet=3.0103;FS=6.311;MLEAC=1;MLEAF=0.500;MQ=58.47;MQRankSum=-11.226;QD=2.83;ReadPosRankSum=-1.557;SOR=0.459;set=HC	GT:AD:AF:DP	0/1:198,29:0.13:227
chr7	142247538	.	CTG	C	244.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.982;ClippingRankSum=0.000;DP=242;ExcessHet=3.0103;FS=0.921;MLEAC=1;MLEAF=0.500;MQ=58.06;MQRankSum=-5.318;QD=1.03;ReadPosRankSum=-3.329;SOR=0.815;set=HC	GT:AD:AF:DP	0/1:220,18:0.08:238
chr7	142247539	.	T	C	992.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.177;ClippingRankSum=0.000;DP=240;ExcessHet=3.0103;FS=8.736;MLEAC=1;MLEAF=0.500;MQ=58.14;MQRankSum=-9.964;QD=4.21;ReadPosRankSum=-0.506;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:203,33:0.14:236
chr7	142247540	.	G	A	1066.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.140;ClippingRankSum=0.000;DP=239;ExcessHet=3.0103;FS=8.500;MLEAC=1;MLEAF=0.500;MQ=58.04;MQRankSum=-10.146;QD=4.54;ReadPosRankSum=-0.867;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:200,35:0.15:235
chr7	142247541	.	C	CAT	247.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.256;ClippingRankSum=0.000;DP=243;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.89;MQRankSum=-5.324;QD=1.04;ReadPosRankSum=-3.234;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:220,19:0.08:239
chr7	142247546	.	C	A	1211.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.030;ClippingRankSum=0.000;DP=237;ExcessHet=3.0103;FS=5.295;MLEAC=1;MLEAF=0.500;MQ=57.60;MQRankSum=-8.919;QD=5.20;ReadPosRankSum=-1.048;SOR=0.367;set=HC	GT:AD:AF:DP	0/1:191,42:0.18:233
chr7	142247554	rs10265119	C	G	434.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.047;ClippingRankSum=0.000;DB;DP=241;ExcessHet=3.0103;FS=0.772;MLEAC=1;MLEAF=0.500;MQ=57.19;MQRankSum=-5.731;QD=1.83;ReadPosRankSum=-2.283;SOR=0.835;set=HC	GT:AD:AF:DP	0/1:209,28:0.12:237
chr7	142247567	rs372792593	A	G	3567.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.717;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=7.785;MLEAC=1;MLEAF=0.500;MQ=56.81;MQRankSum=-10.425;QD=15.51;ReadPosRankSum=-0.969;SOR=0.365;set=HC	GT:AD:AF:DP	0/1:136,94:0.41:230
chr7	142247571	rs376050671	A	G	3653.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.145;ClippingRankSum=0.000;DB;DP=242;ExcessHet=3.0103;FS=9.822;MLEAC=1;MLEAF=0.500;MQ=56.79;MQRankSum=-10.401;QD=15.48;ReadPosRankSum=-0.258;SOR=0.333;set=HC	GT:AD:AF:DP	0/1:136,100:0.42:236
chr7	142247605	rs370122363	G	A	1169.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:138,69:0.33:207
chr7	142250938	rs361439	T	G	3746.77	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:163,171:0.51:334
chr7	142250988	rs361437	G	A	4586.77	.	AC=1;AF=0.500;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	0/1:185,208:0.53:393
chr7	142251132	rs361436	G	T	2932.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:108,133:0.55:241
chr7	142326783	rs17262	A	G	4113.77	.	AC=1;AF=0.500;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	0/1:208,198:0.49:406
chr7	142326909	rs76454382	C	G	8624.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr7	142334744	rs17211	C	A	6326.77	.	AC=1;AF=0.500;AN=2;DB;DP=689;set=Intersection	GT:AD:AF:DP	0/1:377,309:0.45:686
chr7	142353577	rs71522189	C	CTTTGT,CTTTGTTTTGT	9981.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=533;set=Intersection	GT:AF:DP	1/2:0.51,0.47:232
chr7	142364553	rs17254	G	A	2195.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:78,91:0.54:169
chr7	142378708	rs361418	T	G	20203.77	.	AC=2;AF=1.00;AN=2;DB;DP=753;set=Intersection	GT:AD:AF:DP	1/1:0,739:1.00:739
chr7	142378831	rs76429157	C	G	20324.77	.	AC=2;AF=1.00;AN=2;DB;DP=749;set=Intersection	GT:AD:AF:DP	1/1:0,733:1.00:733
chr7	142423161	rs112325538	A	G	1153.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr7	142423289	rs17251	C	A	2912.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:148,132:0.47:280
chr7	142423562	rs62001054	C	T	6153.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr7	142428611	rs361326	C	T	8201.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr7	142428626	rs361327	A	C	8907.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,319:1.00:319
chr7	142448199	rs112413030	GGGTGGAAA	G	1886.73	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:45,49:0.52:94
chr7	142458304	.	T	A	1893	.	AC=1;AF=0.500;AN=2;BRF=0.48;FR=0.5000;HP=2;HapScore=1;MGOF=47;MMLQ=26;MQ=54.15;NF=36;NR=18;PP=1893;QD=35.699466899;SC=AGCCTCACTGTGCTTGTTAAG;SbPval=0.43;Source=Platypus;TC=142;TCF=98;TCR=44;TR=54;WE=142458324;WS=142458294;set=Platypus	GT:AD:AF:DP	1/0:88,54:0.38:142
chr7	142458316	.	A	T	1893	.	AC=1;AF=0.500;AN=2;BRF=0.48;FR=0.5000;HP=3;HapScore=1;MGOF=47;MMLQ=27;MQ=54.04;NF=43;NR=21;PP=1893;QD=30.121425196;SC=CTTGTTAAGGATTTCTAATTA;SbPval=0.47;Source=Platypus;TC=155;TCF=106;TCR=49;TR=64;WE=142458324;WS=142458294;set=Platypus	GT:AD:AF:DP	1/0:91,64:0.41:155
chr7	142458371	rs367779270	T	C	654.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:248,58:0.19:306
chr7	142458409	rs200665515	C	G	293.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.334;ClippingRankSum=0.000;DB;DP=512;ExcessHet=3.0103;FS=3.743;MLEAC=1;MLEAF=0.500;MQ=57.24;MQRankSum=-3.394;QD=0.58;ReadPosRankSum=0.577;SOR=1.392;set=HC	GT:AD:AF:DP	0/1:469,40:0.08:509
chr7	142458412	rs202003805	C	T	326.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.272;ClippingRankSum=0.000;DB;DP=519;ExcessHet=3.0103;FS=3.743;MLEAC=1;MLEAF=0.500;MQ=57.27;MQRankSum=-3.998;QD=0.63;ReadPosRankSum=0.993;SOR=1.337;set=HC	GT:AD:AF:DP	0/1:474,42:0.08:516
chr7	142458414	.	C	T	372.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.238;ClippingRankSum=0.000;DP=516;ExcessHet=3.0103;FS=5.243;MLEAC=1;MLEAF=0.500;MQ=57.28;MQRankSum=-4.246;QD=0.73;ReadPosRankSum=1.190;SOR=1.411;set=HC	GT:AD:AF:DP	0/1:470,43:0.08:513
chr7	142458437	rs372637371	C	T	952.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.388;ClippingRankSum=0.000;DB;DP=490;ExcessHet=3.0103;FS=0.805;MLEAC=1;MLEAF=0.500;MQ=57.33;MQRankSum=-7.568;QD=1.95;ReadPosRankSum=2.145;SOR=0.832;set=HC	GT:AD:AF:DP	0/1:425,64:0.13:489
chr7	142458451	rs111033566	A	T	128.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.249;ClippingRankSum=0.000;DB;DP=468;ExcessHet=3.0103;FS=9.252;MLEAC=1;MLEAF=0.500;MQ=57.06;MQRankSum=-13.819;QD=0.28;ReadPosRankSum=-2.424;SOR=1.343;set=HC	GT:AD:AF:DP	0/1:411,56:0.12:467
chr7	142458511	rs138464021	G	T	1212.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.026;ClippingRankSum=0.000;DB;DP=512;ExcessHet=3.0103;FS=1.709;MLEAC=1;MLEAF=0.500;MQ=58.65;MQRankSum=-16.547;QD=2.37;ReadPosRankSum=1.195;SOR=0.806;set=HC	GT:AD:AF:DP	0/1:443,68:0.13:511
chr7	142458523	rs149246646	T	A	1112.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.555;ClippingRankSum=0.000;DB;DP=496;ExcessHet=3.0103;FS=7.774;MLEAC=1;MLEAF=0.500;MQ=58.73;MQRankSum=-18.443;QD=2.24;ReadPosRankSum=0.247;SOR=1.594;set=HC	GT:AD:AF:DP	0/1:441,55:0.11:496
chr7	142458526	rs144422014	A	G	917.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.150;ClippingRankSum=0.000;DB;DP=497;ExcessHet=3.0103;FS=7.742;MLEAC=1;MLEAF=0.500;MQ=58.76;MQRankSum=-18.396;QD=1.85;ReadPosRankSum=-0.323;SOR=1.558;set=HC	GT:AD:AF:DP	0/1:443,54:0.11:497
chr7	142458527	rs148440491	C	G	875.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.061;ClippingRankSum=0.000;DB;DP=498;ExcessHet=3.0103;FS=7.709;MLEAC=1;MLEAF=0.500;MQ=58.80;MQRankSum=-18.344;QD=1.76;ReadPosRankSum=-0.262;SOR=1.518;set=HC	GT:AD:AF:DP	0/1:445,53:0.11:498
chr7	142458531	rs147366981	C	T	809.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.183;ClippingRankSum=0.000;DB;DP=489;ExcessHet=3.0103;FS=8.092;MLEAC=1;MLEAF=0.500;MQ=58.78;MQRankSum=-18.572;QD=1.66;ReadPosRankSum=-1.002;SOR=1.658;set=HC	GT:AD:AF:DP	0/1:438,51:0.10:489
chr7	142458542	.	A	G	611.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.009;ClippingRankSum=0.000;DP=451;ExcessHet=3.0103;FS=4.906;MLEAC=1;MLEAF=0.500;MQ=58.77;MQRankSum=-20.076;QD=1.36;ReadPosRankSum=-2.288;SOR=1.456;set=HC	GT:AD:AF:DP	0/1:408,43:0.10:451
chr7	142458550	rs149455681	GC	CT	315.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.260;ClippingRankSum=0.000;DB;DP=417;ExcessHet=3.0103;FS=7.504;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.77;MQRankSum=-20.369;QD=0.76;ReadPosRankSum=-2.524;SOR=1.694;set=HC	GT:AD:AF:DP	0/1:382,35:0.08:417
chr7	142458661	.	T	C	66.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.159;ClippingRankSum=0.000;DP=130;ExcessHet=3.0103;FS=15.049;MLEAC=1;MLEAF=0.500;MQ=58.11;MQRankSum=-7.822;QD=0.52;ReadPosRankSum=0.694;SOR=1.439;set=HC	GT:AD:AF:DP	0/1:118,10:0.08:128
chr7	142458663	.	G	A	114.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.035;ClippingRankSum=0.000;DP=125;ExcessHet=3.0103;FS=17.891;MLEAC=1;MLEAF=0.500;MQ=57.87;MQRankSum=-7.706;QD=0.93;ReadPosRankSum=0.379;SOR=1.665;set=HC	GT:AD:AF:DP	0/1:113,11:0.09:124
chr7	142458669	rs374824703	G	A	151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.854;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=20.050;MLEAC=1;MLEAF=0.500;MQ=57.73;MQRankSum=-7.791;QD=1.20;ReadPosRankSum=1.091;SOR=1.876;set=HC	GT:AD:AF:DP	0/1:114,12:0.10:126
chr7	142458677	rs369222898	G	A	197.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.032;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=17.869;MLEAC=1;MLEAF=0.500;MQ=57.21;MQRankSum=-7.772;QD=1.70;ReadPosRankSum=0.207;SOR=1.633;set=HC	GT:AD:AF:DP	0/1:102,14:0.12:116
chr7	142458697	rs373299247	T	A	1170.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.183;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=30.289;MLEAC=1;MLEAF=0.500;MQ=56.54;MQRankSum=-9.490;QD=10.09;ReadPosRankSum=0.532;SOR=2.252;set=HC	GT:AD:AF:DP	0/1:82,34:0.29:116
chr7	142458700	rs376748793	G	T	1170.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.437;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=31.748;MLEAC=1;MLEAF=0.500;MQ=56.55;MQRankSum=-9.733;QD=9.68;ReadPosRankSum=1.274;SOR=2.328;set=HC	GT:AD:AF:DP	0/1:86,35:0.29:121
chr7	142458719	rs373298203	G	A	130.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.184;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=3.124;MLEAC=1;MLEAF=0.500;MQ=56.83;MQRankSum=-5.604;QD=0.90;ReadPosRankSum=1.648;SOR=1.125;set=HC	GT:AD:AF:DP	0/1:123,22:0.15:145
chr7	142458737	rs370066365	C	G	1436.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.304;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=6.418;MLEAC=1;MLEAF=0.500;MQ=57.12;MQRankSum=-4.903;QD=7.44;ReadPosRankSum=-0.726;SOR=1.229;set=HC	GT:AD:AF:DP	0/1:149,44:0.23:193
chr7	142458739	rs374137559	T	C	1436.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.439;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=6.205;MLEAC=1;MLEAF=0.500;MQ=57.19;MQRankSum=-4.638;QD=7.26;ReadPosRankSum=-1.049;SOR=1.207;set=HC	GT:AD:AF:DP	0/1:151,47:0.24:198
chr7	142458829	rs377669553	A	G	3841.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.753;ClippingRankSum=0.000;DB;DP=411;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.25;MQRankSum=-10.278;QD=9.42;ReadPosRankSum=1.132;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:295,113:0.28:408
chr7	142458837	rs370580835	A	T	3804.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.326;ClippingRankSum=0.000;DB;DP=416;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.43;MQRankSum=-11.307;QD=9.21;ReadPosRankSum=0.876;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:300,113:0.27:413
chr7	142458841	rs375181092	AT	A	3726.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.840;ClippingRankSum=0.000;DB;DP=423;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.55;MQRankSum=-11.511;QD=8.87;ReadPosRankSum=1.034;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:309,111:0.26:420
chr7	142458873	rs373388800	A	C	2780.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.927;ClippingRankSum=0.000;DB;DP=397;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.50;MQRankSum=-11.894;QD=7.04;ReadPosRankSum=-1.135;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:297,98:0.25:395
chr7	142458881	rs376074412	A	T	2541.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.930;ClippingRankSum=0.000;DB;DP=354;ExcessHet=3.0103;FS=3.587;MLEAC=1;MLEAF=0.500;MQ=58.35;MQRankSum=-13.192;QD=7.20;ReadPosRankSum=0.398;SOR=0.927;set=HC	GT:AD:AF:DP	0/1:276,77:0.22:353
chr7	142458884	rs370405149	C	G	2334.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.680;ClippingRankSum=0.000;DB;DP=344;ExcessHet=3.0103;FS=2.229;MLEAC=1;MLEAF=0.500;MQ=58.37;MQRankSum=-13.331;QD=6.79;ReadPosRankSum=0.422;SOR=0.862;set=HC	GT:AD:AF:DP	0/1:270,74:0.22:344
chr7	142458886	rs373808731	T	A	2262.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.755;ClippingRankSum=0.000;DB;DP=334;ExcessHet=3.0103;FS=1.055;MLEAC=1;MLEAF=0.500;MQ=58.32;MQRankSum=-13.959;QD=6.77;ReadPosRankSum=1.473;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:267,67:0.20:334
chr7	142458887	rs368632869	T	C	2224.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.591;ClippingRankSum=0.000;DB;DP=332;ExcessHet=3.0103;FS=1.050;MLEAC=1;MLEAF=0.500;MQ=58.31;MQRankSum=-13.912;QD=6.70;ReadPosRankSum=1.318;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:265,67:0.20:332
chr7	142458898	rs371109898	A	T	1888.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.650;ClippingRankSum=0.000;DB;DP=296;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.10;MQRankSum=-13.841;QD=6.38;ReadPosRankSum=0.389;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:235,61:0.21:296
chr7	142458902	.	G	C	1711.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.147;ClippingRankSum=0.000;DP=281;ExcessHet=3.0103;FS=1.161;MLEAC=1;MLEAF=0.500;MQ=58.02;MQRankSum=-13.999;QD=6.09;ReadPosRankSum=0.643;SOR=0.597;set=HC	GT:AD:AF:DP	0/1:225,56:0.20:281
chr7	142458906	rs374242167	T	G	1693.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.572;ClippingRankSum=0.000;DB;DP=276;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.99;MQRankSum=-13.670;QD=6.14;ReadPosRankSum=0.126;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:220,56:0.20:276
chr7	142458910	rs368381895	C	T	1624.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.032;ClippingRankSum=0.000;DB;DP=260;ExcessHet=3.0103;FS=0.573;MLEAC=1;MLEAF=0.500;MQ=57.98;MQRankSum=-13.060;QD=6.25;ReadPosRankSum=0.089;SOR=0.742;set=HC	GT:AD:AF:DP	0/1:208,52:0.20:260
chr7	142458929	rs371622191	G	C	1202.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.548;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=2.328;MLEAC=1;MLEAF=0.500;MQ=58.36;MQRankSum=-10.378;QD=6.11;ReadPosRankSum=-1.338;SOR=0.959;set=HC	GT:AD:AF:DP	0/1:156,41:0.21:197
chr7	142458938	rs374770738	T	A	1175.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.364;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=1.534;MLEAC=1;MLEAF=0.500;MQ=58.43;MQRankSum=-9.499;QD=6.68;ReadPosRankSum=-2.000;SOR=0.882;set=HC	GT:AD:AF:DP	0/1:138,38:0.22:176
chr7	142458967	rs367567937	A	T	420.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.032;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=4.134;MLEAC=1;MLEAF=0.500;MQ=58.57;MQRankSum=-7.985;QD=4.05;ReadPosRankSum=-0.082;SOR=1.339;set=HC	GT:AD:AF:DP	0/1:86,18:0.17:104
chr7	142458972	rs371766102	T	C	407.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.880;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=7.513;MLEAC=1;MLEAF=0.500;MQ=58.34;MQRankSum=-8.238;QD=4.53;ReadPosRankSum=0.081;SOR=2.187;set=HC	GT:AD:AF:DP	0/1:75,15:0.17:90
chr7	142458987	rs375094420	C	G	158.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.942;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=7.325;MLEAC=1;MLEAF=0.500;MQ=59.07;MQRankSum=-5.586;QD=2.56;ReadPosRankSum=1.350;SOR=2.359;set=HC	GT:AD:AF:DP	0/1:53,9:0.15:62
chr7	142459042	rs369844822	C	T	64.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:21,4:0.16:25
chr7	142460313	rs6666	T	C	2277.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.116;ClippingRankSum=0.000;DB;DP=847;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.40;MQRankSum=7.135;QD=2.71;ReadPosRankSum=-3.521;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:662,178:0.21:840
chr7	142460335	rs201550522	A	G	11082.77	.	AC=1;AF=0.500;AN=2;DB;DP=792;set=Intersection	GT:AD:AF:DP	0/1:381,404:0.51:785
chr7	142460339	rs200973660	G	A	216.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.946;ClippingRankSum=0.000;DB;DP=776;ExcessHet=3.0103;FS=6.527;MLEAC=1;MLEAF=0.500;MQ=57.60;MQRankSum=-3.440;QD=0.29;ReadPosRankSum=0.077;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:642,102:0.14:744
chr7	142460369	rs201719096	G	A	8196.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.666;ClippingRankSum=0.000;DB;DP=639;ExcessHet=3.0103;FS=1.782;MLEAC=1;MLEAF=0.500;MQ=57.46;MQRankSum=-13.877;QD=12.91;ReadPosRankSum=-0.154;SOR=0.873;set=HC	GT:AD:AF:DP	0/1:382,253:0.40:635
chr7	142460374	rs200070487	A	G	1570.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.401;ClippingRankSum=0.000;DB;DP=628;ExcessHet=3.0103;FS=0.799;MLEAC=1;MLEAF=0.500;MQ=57.48;MQRankSum=-7.995;QD=2.51;ReadPosRankSum=-0.668;SOR=0.842;set=HC	GT:AD:AF:DP	0/1:545,80:0.13:625
chr7	142460379	.	C	T	1520.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.188;ClippingRankSum=0.000;DP=613;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.42;MQRankSum=-8.184;QD=2.49;ReadPosRankSum=-2.075;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:533,77:0.13:610
chr7	142460388	rs1804561	C	T	1076.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.530;ClippingRankSum=0.000;DB;DP=590;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.53;MQRankSum=-9.392;QD=1.83;ReadPosRankSum=-2.472;SOR=0.767;set=HC	GT:AD:AF:DP	0/1:526,61:0.10:587
chr7	142460394	rs377124851	T	C	3283.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.391;ClippingRankSum=0.000;DB;DP=590;ExcessHet=3.0103;FS=4.319;MLEAC=1;MLEAF=0.500;MQ=57.67;MQRankSum=-11.966;QD=5.60;ReadPosRankSum=-2.602;SOR=1.119;set=HC	GT:AD:AF:DP	0/1:473,113:0.19:586
chr7	142460412	.	A	C	3164.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=12.454;ClippingRankSum=0.000;DP=578;ExcessHet=3.0103;FS=15.607;MLEAC=1;MLEAF=0.500;MQ=57.92;MQRankSum=-20.909;QD=5.51;ReadPosRankSum=-5.080;SOR=1.854;set=HC	GT:AD:AF:DP	0/1:467,107:0.19:574
chr7	142460415	.	T	C	3021.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=13.712;ClippingRankSum=0.000;DP=575;ExcessHet=3.0103;FS=18.933;MLEAC=1;MLEAF=0.500;MQ=57.96;MQRankSum=-21.567;QD=5.29;ReadPosRankSum=-5.261;SOR=2.175;set=HC	GT:AD:AF:DP	0/1:472,99:0.17:571
chr7	142460428	rs370303567	CCAA	C	1484.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=10.053;ClippingRankSum=0.000;DB;DP=569;ExcessHet=3.0103;FS=16.057;MLEAC=1;MLEAF=0.500;MQ=58.03;MQRankSum=-23.697;QD=2.63;ReadPosRankSum=-5.215;SOR=2.334;set=HC	GT:AD:AF:DP	0/1:497,68:0.12:565
chr7	142460461	.	C	A	726.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.824;ClippingRankSum=0.000;DP=486;ExcessHet=3.0103;FS=3.166;MLEAC=1;MLEAF=0.500;MQ=58.24;MQRankSum=-20.907;QD=1.50;ReadPosRankSum=-2.161;SOR=1.071;set=HC	GT:AD:AF:DP	0/1:433,50:0.10:483
chr7	142460463	.	T	C	723.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.656;ClippingRankSum=0.000;DP=476;ExcessHet=3.0103;FS=2.011;MLEAC=1;MLEAF=0.500;MQ=58.36;MQRankSum=-21.183;QD=1.53;ReadPosRankSum=-0.121;SOR=1.009;set=HC	GT:AD:AF:DP	0/1:425,48:0.10:473
chr7	142460482	.	G	T	674.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.478;ClippingRankSum=0.000;DP=397;ExcessHet=3.0103;FS=1.282;MLEAC=1;MLEAF=0.500;MQ=58.24;MQRankSum=-19.190;QD=1.73;ReadPosRankSum=1.105;SOR=0.844;set=HC	GT:AD:AF:DP	0/1:348,43:0.11:391
chr7	142460494	.	A	C	722.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.520;ClippingRankSum=0.000;DP=335;ExcessHet=3.0103;FS=2.212;MLEAC=1;MLEAF=0.500;MQ=58.06;MQRankSum=-17.854;QD=2.18;ReadPosRankSum=2.949;SOR=0.934;set=HC	GT:AD:AF:DP	0/1:293,38:0.11:331
chr7	142460495	.	A	C	697.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.329;ClippingRankSum=0.000;DP=333;ExcessHet=3.0103;FS=2.214;MLEAC=1;MLEAF=0.500;MQ=58.10;MQRankSum=-17.795;QD=2.12;ReadPosRankSum=3.434;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:292,37:0.11:329
chr7	142460503	.	T	C	694.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.736;ClippingRankSum=0.000;DP=311;ExcessHet=3.0103;FS=1.397;MLEAC=1;MLEAF=0.500;MQ=57.85;MQRankSum=-17.473;QD=2.26;ReadPosRankSum=2.549;SOR=0.877;set=HC	GT:AD:AF:DP	0/1:270,38:0.12:308
chr7	142460531	rs374907758	CA	C	1102.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.414;ClippingRankSum=0.000;DB;DP=228;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.74;MQRankSum=-14.732;QD=4.99;ReadPosRankSum=-0.177;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:179,42:0.19:221
chr7	142460556	rs374121411	C	T	1055.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.646;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=0.747;MLEAC=1;MLEAF=0.500;MQ=56.32;MQRankSum=-12.735;QD=6.36;ReadPosRankSum=-0.537;SOR=0.814;set=HC	GT:AD:AF:DP	0/1:130,36:0.22:166
chr7	142460569	rs377684105	T	C	773.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.260;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=2.990;MLEAC=1;MLEAF=0.500;MQ=56.42;MQRankSum=-11.874;QD=5.37;ReadPosRankSum=1.348;SOR=1.090;set=HC	GT:AD:AF:DP	0/1:114,30:0.21:144
chr7	142460603	rs370565903	A	G	571.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:59,23:0.28:82
chr7	142460660	.	T	C	579.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.544;ClippingRankSum=0.000;DP=111;ExcessHet=3.0103;FS=15.468;MLEAC=1;MLEAF=0.500;MQ=57.43;MQRankSum=-8.468;QD=5.22;ReadPosRankSum=2.604;SOR=1.132;set=HC	GT:AD:AF:DP	0/1:89,22:0.20:111
chr7	142460669	.	C	G	543.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.277;ClippingRankSum=0.000;DP=113;ExcessHet=3.0103;FS=16.656;MLEAC=1;MLEAF=0.500;MQ=57.78;MQRankSum=-8.420;QD=4.81;ReadPosRankSum=2.543;SOR=1.208;set=HC	GT:AD:AF:DP	0/1:93,20:0.18:113
chr7	142460671	rs377695327	A	G	513.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.298;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=18.802;MLEAC=1;MLEAF=0.500;MQ=57.90;MQRankSum=-8.676;QD=4.32;ReadPosRankSum=2.670;SOR=1.207;set=HC	GT:AD:AF:DP	0/1:99,20:0.17:119
chr7	142460690	.	C	CTCTT	614.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.294;ClippingRankSum=0.000;DP=155;ExcessHet=3.0103;FS=30.701;MLEAC=1;MLEAF=0.500;MQ=58.15;MQRankSum=-11.044;QD=4.02;ReadPosRankSum=0.158;SOR=1.321;set=HC	GT:AD:AF:DP	0/1:129,24:0.16:153
chr7	142460865	rs6667	T	C	4928.77	.	AC=1;AF=0.500;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	0/1:236,234:0.50:470
chr7	142468205	.	A	C	5011.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.187;ClippingRankSum=0.000;DP=537;ExcessHet=3.0103;FS=3.864;MLEAC=1;MLEAF=0.500;MQ=58.23;MQRankSum=-17.651;QD=9.42;ReadPosRankSum=3.454;SOR=0.466;set=HC	GT:AD:AF:DP	0/1:384,148:0.28:532
chr7	142468206	.	G	C	655.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.214;ClippingRankSum=0.000;DP=540;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.24;MQRankSum=-13.251;QD=1.23;ReadPosRankSum=4.089;SOR=0.541;set=HC	GT:AD:AF:DP	0/1:481,54:0.10:535
chr7	142468213	.	A	G	4995.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.950;ClippingRankSum=0.000;DP=592;ExcessHet=3.0103;FS=2.143;MLEAC=1;MLEAF=0.500;MQ=58.45;MQRankSum=-18.646;QD=8.54;ReadPosRankSum=3.352;SOR=0.491;set=HC	GT:AD:AF:DP	0/1:437,148:0.25:585
chr7	142468218	.	G	A	2221.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.891;ClippingRankSum=0.000;DP=611;ExcessHet=3.0103;FS=1.654;MLEAC=1;MLEAF=0.500;MQ=58.56;MQRankSum=-10.963;QD=3.68;ReadPosRankSum=2.561;SOR=0.480;set=HC	GT:AD:AF:DP	0/1:510,94:0.16:604
chr7	142468221	.	T	A	2234.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.527;ClippingRankSum=0.000;DP=619;ExcessHet=3.0103;FS=2.759;MLEAC=1;MLEAF=0.500;MQ=58.65;MQRankSum=-10.596;QD=3.65;ReadPosRankSum=3.403;SOR=0.469;set=HC	GT:AD:AF:DP	0/1:522,90:0.15:612
chr7	142468228	.	A	G	4355.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.713;ClippingRankSum=0.000;DP=656;ExcessHet=3.0103;FS=2.220;MLEAC=1;MLEAF=0.500;MQ=58.79;MQRankSum=-19.384;QD=6.70;ReadPosRankSum=1.750;SOR=0.492;set=HC	GT:AD:AF:DP	0/1:507,143:0.22:650
chr7	142468232	.	C	T	116.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.466;ClippingRankSum=0.000;DP=675;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.84;MQRankSum=-14.789;QD=0.17;ReadPosRankSum=-2.947;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:621,48:0.07:669
chr7	142470290	rs11769872	T	C	1975.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:96,95:0.50:191
chr7	142470364	rs11770572	T	C	2319.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:95,109:0.53:204
chr7	142470574	rs3752404	A	G	5915.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.782;ClippingRankSum=0.000;DB;DP=1172;ExcessHet=3.0103;FS=0.571;MLEAC=1;MLEAF=0.500;MQ=57.33;MQRankSum=8.665;QD=5.26;ReadPosRankSum=1.932;SOR=0.762;set=HC	GT:AD:AF:DP	0/1:768,356:0.32:1124
chr7	142470582	rs374775884	T	C	15746.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.304;ClippingRankSum=0.000;DB;DP=1285;ExcessHet=3.0103;FS=2.636;MLEAC=1;MLEAF=0.500;MQ=57.31;MQRankSum=-20.351;QD=12.71;ReadPosRankSum=1.122;SOR=0.480;set=HC	GT:AD:AF:DP	0/1:806,433:0.35:1239
chr7	142470585	.	G	A	4834.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.022;ClippingRankSum=0.000;DP=1327;ExcessHet=3.0103;FS=3.870;MLEAC=1;MLEAF=0.500;MQ=57.31;MQRankSum=-10.912;QD=3.78;ReadPosRankSum=-0.038;SOR=0.408;set=HC	GT:AD:AF:DP	0/1:1095,185:0.14:1280
chr7	142470597	.	G	A	19365.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.688;ClippingRankSum=0.000;DP=1559;ExcessHet=3.0103;FS=4.315;MLEAC=1;MLEAF=0.500;MQ=57.21;MQRankSum=-22.875;QD=12.81;ReadPosRankSum=4.160;SOR=0.467;set=HC	GT:AD:AF:DP	0/1:976,536:0.35:1512
chr7	142470607	.	A	T	7288.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.408;ClippingRankSum=0.000;DP=1793;ExcessHet=3.0103;FS=4.851;MLEAC=1;MLEAF=0.500;MQ=57.24;MQRankSum=-16.307;QD=4.17;ReadPosRankSum=2.280;SOR=0.594;set=HC	GT:AD:AF:DP	0/1:1475,271:0.16:1746
chr7	142470612	rs367807406	A	G	9097.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.444;ClippingRankSum=0.000;DB;DP=1898;ExcessHet=3.0103;FS=1.457;MLEAC=1;MLEAF=0.500;MQ=57.24;MQRankSum=-18.753;QD=4.93;ReadPosRankSum=3.710;SOR=0.555;set=HC	GT:AD:AF:DP	0/1:1489,356:0.19:1845
chr7	142470614	.	C	T	7317.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.902;ClippingRankSum=0.000;DP=1920;ExcessHet=3.0103;FS=3.698;MLEAC=1;MLEAF=0.500;MQ=57.24;MQRankSum=-17.285;QD=3.92;ReadPosRankSum=2.961;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:1577,291:0.16:1868
chr7	142470645	rs368963025	T	C	17655.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.245;ClippingRankSum=0.000;DB;DP=2237;ExcessHet=3.0103;FS=2.670;MLEAC=1;MLEAF=0.500;MQ=57.32;MQRankSum=-31.027;QD=8.30;ReadPosRankSum=3.084;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:1454,673:0.32:2127
chr7	142470646	rs375588069	T	C	3550.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.991;ClippingRankSum=0.000;DB;DP=2237;ExcessHet=3.0103;FS=0.684;MLEAC=1;MLEAF=0.500;MQ=57.33;MQRankSum=-18.241;QD=1.67;ReadPosRankSum=-3.169;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:1736,391:0.18:2127
chr7	142470683	.	C	CCT	1307.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.419;ClippingRankSum=0.000;DP=1999;ExcessHet=3.0103;FS=8.612;MLEAC=1;MLEAF=0.500;MQ=57.56;MQRankSum=-18.881;QD=0.69;ReadPosRankSum=-5.397;SOR=1.931;set=HC	GT:AD:AF:DP	0/1:1712,177:0.09:1889
chr7	142470685	.	ATG	A	1227.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=11.810;ClippingRankSum=0.000;DP=1913;ExcessHet=3.0103;FS=11.218;MLEAC=1;MLEAF=0.500;MQ=57.66;MQRankSum=-19.492;QD=0.65;ReadPosRankSum=-5.855;SOR=2.086;set=HC	GT:AD:AF:DP	0/1:1718,165:0.09:1883
chr7	142470686	.	T	C	4446.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.838;ClippingRankSum=0.000;DP=1879;ExcessHet=3.0103;FS=4.048;MLEAC=1;MLEAF=0.500;MQ=57.63;MQRankSum=-26.483;QD=2.40;ReadPosRankSum=-1.430;SOR=1.175;set=HC	GT:AD:AF:DP	0/1:1614,236:0.13:1850
chr7	142470687	.	G	A	4445.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.125;ClippingRankSum=0.000;DP=1871;ExcessHet=3.0103;FS=2.886;MLEAC=1;MLEAF=0.500;MQ=57.67;MQRankSum=-26.602;QD=2.41;ReadPosRankSum=-1.335;SOR=1.174;set=HC	GT:AD:AF:DP	0/1:1617,231:0.12:1848
chr7	142470691	rs10952531	G	C	14067.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.829;ClippingRankSum=0.000;DB;DP=1846;ExcessHet=3.0103;FS=2.527;MLEAC=1;MLEAF=0.500;MQ=57.70;MQRankSum=14.683;QD=7.70;ReadPosRankSum=2.130;SOR=0.504;set=HC	GT:AD:AF:DP	0/1:1106,722:0.39:1828
chr7	142470693	.	T	C	11286.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.262;ClippingRankSum=0.000;DP=1821;ExcessHet=3.0103;FS=12.980;MLEAC=1;MLEAF=0.500;MQ=57.70;MQRankSum=-36.319;QD=6.25;ReadPosRankSum=-6.138;SOR=1.633;set=HC	GT:AD:AF:DP	0/1:1445,361:0.20:1806
chr7	142470694	.	G	A	4077.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.205;ClippingRankSum=0.000;DP=1812;ExcessHet=3.0103;FS=4.253;MLEAC=1;MLEAF=0.500;MQ=57.72;MQRankSum=-27.545;QD=2.27;ReadPosRankSum=-2.878;SOR=1.220;set=HC	GT:AD:AF:DP	0/1:1588,212:0.12:1800
chr7	142470708	rs375249350	C	T	3038.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.004;ClippingRankSum=0.000;DB;DP=1598;ExcessHet=3.0103;FS=6.202;MLEAC=1;MLEAF=0.500;MQ=57.73;MQRankSum=-30.322;QD=1.91;ReadPosRankSum=-6.509;SOR=1.318;set=HC	GT:AD:AF:DP	0/1:1423,167:0.11:1590
chr7	142470709	.	A	G	6843.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=10.367;ClippingRankSum=0.000;DP=1580;ExcessHet=3.0103;FS=9.390;MLEAC=1;MLEAF=0.500;MQ=57.74;MQRankSum=-39.080;QD=4.35;ReadPosRankSum=-7.360;SOR=1.612;set=HC	GT:AD:AF:DP	0/1:1330,242:0.15:1572
chr7	142470726	.	A	G	2877.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=12.828;ClippingRankSum=0.000;DP=1268;ExcessHet=3.0103;FS=7.571;MLEAC=1;MLEAF=0.500;MQ=58.21;MQRankSum=-35.141;QD=2.28;ReadPosRankSum=-7.469;SOR=1.547;set=HC	GT:AD:AF:DP	0/1:1119,142:0.11:1261
chr7	142470754	.	A	G	580.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.438;ClippingRankSum=0.000;DP=845;ExcessHet=3.0103;FS=8.403;MLEAC=1;MLEAF=0.500;MQ=58.86;MQRankSum=-26.287;QD=0.70;ReadPosRankSum=-6.826;SOR=1.875;set=HC	GT:AD:AF:DP	0/1:771,63:0.08:834
chr7	142478608	rs73742439	G	A	578.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr7	142478755	rs73742441	T	C	4997.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr7	142478771	rs201689354	A	AC	8325.73	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr7	142478853	.	T	C	63.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.078;ClippingRankSum=0.000;DP=423;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.69;MQRankSum=-10.633;QD=0.15;ReadPosRankSum=-4.211;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:397,25:0.06:422
chr7	142478865	.	T	C	836.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.853;ClippingRankSum=0.000;DP=467;ExcessHet=3.0103;FS=1.859;MLEAC=1;MLEAF=0.500;MQ=59.58;MQRankSum=-10.369;QD=1.80;ReadPosRankSum=-6.209;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:415,50:0.11:465
chr7	142478881	.	T	TAG	1174.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.889;ClippingRankSum=0.000;DP=541;ExcessHet=3.0103;FS=1.843;MLEAC=1;MLEAF=0.500;MQ=59.59;MQRankSum=-11.820;QD=2.18;ReadPosRankSum=-2.533;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:477,61:0.11:538
chr7	142478897	rs73742442	T	C	18203.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.930;ClippingRankSum=0.000;DB;DP=615;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.38;MQRankSum=-2.763;QD=29.84;ReadPosRankSum=-0.300;SOR=0.706;set=HC	GT:AD:AF:DP	1/1:2,608:1.00:610
chr7	142478897	.	TCTCAGGCCCCAACCACCCCCCGTTACTGGCAGACAT	CCTCAGGCCCCAACCACCCCCCGTTACTGGCAGACAT,CCTCAGGCTCCAACCATACCCCGTTCCTGGCAGATGC	2962	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.5;FR=0.5000,0.5000;HP=1;HapScore=1;MGOF=33;MMLQ=26;MQ=58.16;NF=201,37;NR=187,26;PP=2962,2897;QD=20;SC=TCATGCCCTGTCTCAGGCCCC;SbPval=0.53;Source=Platypus;TC=390;TCF=202;TCR=188;TR=388,63;WE=142478941;WS=142478887;set=Platypus	GT:AF:DP	0/1:0.99:390
chr7	142478905	.	C	T	2430.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.857;ClippingRankSum=0.000;DP=640;ExcessHet=3.0103;FS=0.728;MLEAC=1;MLEAF=0.500;MQ=59.23;MQRankSum=-15.862;QD=3.83;ReadPosRankSum=0.902;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:537,98:0.15:635
chr7	142478913	.	CC	TA	2548.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.582;ClippingRankSum=0.000;DP=636;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.22;MQRankSum=-16.284;QD=4.04;ReadPosRankSum=1.852;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:532,99:0.16:631
chr7	142479912	rs200484890	C	G	1351.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.609;ClippingRankSum=0.000;DB;DP=336;ExcessHet=3.0103;FS=13.201;MLEAC=1;MLEAF=0.500;MQ=54.66;MQRankSum=-3.862;QD=4.05;ReadPosRankSum=1.684;SOR=0.328;set=HC	GT:AD:AF:DP	0/1:279,55:0.16:334
chr7	142479915	rs377017470	T	C	2263.77	.	AC=1;AF=0.500;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	0/1:227,111:0.33:338
chr7	142479917	rs369591097	C	T	1293.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.623;ClippingRankSum=0.000;DB;DP=352;ExcessHet=3.0103;FS=12.941;MLEAC=1;MLEAF=0.500;MQ=54.63;MQRankSum=-3.681;QD=3.71;ReadPosRankSum=0.997;SOR=0.555;set=HC	GT:AD:AF:DP	0/1:295,54:0.15:349
chr7	142479940	rs58649169	C	T	5466.77	.	AC=1;AF=0.500;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	0/1:178,226:0.56:404
chr7	142479954	rs201779716	C	T	4918.77	.	AC=1;AF=0.500;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	0/1:211,229:0.52:440
chr7	142480002	rs199512312	C	A	7201.77	.	AC=1;AF=0.500;AN=2;DB;DP=526;set=Intersection	GT:AD:AF:DP	0/1:202,321:0.61:523
chr7	142480012	rs56146961	C	T	6751.77	.	AC=1;AF=0.500;AN=2;DB;DP=520;set=Intersection	GT:AD:AF:DP	0/1:314,203:0.39:517
chr7	142480034	rs10808019	C	A	3819.77	.	AC=1;AF=0.500;AN=2;DB;DP=478;set=Intersection	GT:AD:AF:DP	0/1:286,189:0.40:475
chr7	142480067	rs201659809	C	T	4356.77	.	AC=1;AF=0.500;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	0/1:152,181:0.54:333
chr7	142480079	rs371397657	T	G	4503.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.760;ClippingRankSum=0.000;DB;DP=253;ExcessHet=3.0103;FS=7.092;MLEAC=1;MLEAF=0.500;MQ=55.94;MQRankSum=-13.237;QD=17.80;ReadPosRankSum=-1.898;SOR=1.104;set=HC	GT:AD:AF:DP	0/1:131,122:0.48:253
chr7	142480083	.	A	C	4360.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.214;ClippingRankSum=0.000;DP=236;ExcessHet=3.0103;FS=8.647;MLEAC=1;MLEAF=0.500;MQ=55.63;MQRankSum=-13.555;QD=18.48;ReadPosRankSum=-2.571;SOR=1.190;set=HC	GT:AD:AF:DP	0/1:123,113:0.48:236
chr7	142480095	rs374574556	G	A	1778.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:102,83:0.45:185
chr7	142480126	rs374398930	C	A	504.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:68,25:0.27:93
chr7	142480137	rs57353422	A	G	3293.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.43;QD=44.51;SOR=3.026;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr7	142480137	.	AGAACTACTGAG	GGAAGTACTGAC,GGAAGTACTGAG	1856	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.5;FR=0.5000,0.5000;HP=2;HapScore=4;MGOF=73;MMLQ=28;MQ=49.93;NF=8,11;NR=33,61;PP=1856,1368;QD=46.8162896308;SC=TTCAGCCCAGAGAACTACTGA;SbPval=0.22;Source=Platypus;TC=80;TCF=11;TCR=69;TR=41,72;WE=142480156;WS=142480116;set=Platypus	GT:AF:DP	0/1:0.51:80
chr7	142480141	rs55775033	C	G	3125.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.54;QD=47.36;SOR=2.939;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr7	142480148	rs10808021	G	C	2326.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.40;QD=44.75;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr7	142481234	rs57725689	T	C	23595.77	.	AC=2;AF=1.00;AN=2;DB;DP=842;set=Intersection	GT:AD:AF:DP	1/1:0,838:1.00:838
chr7	142481376	rs73740310	T	A	8706.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:1,299:1.00:300
chr7	142481807	rs4726591	C	T	6823.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr7	142481867	rs59320698	C	G	9687.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	1/1:0,348:1.00:348
chr7	142482184	rs73740312	A	C	2902.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr7	142482376	.	A	C	424.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.196;ClippingRankSum=0.000;DP=269;ExcessHet=3.0103;FS=3.989;MLEAC=1;MLEAF=0.500;MQ=58.14;MQRankSum=-15.541;QD=1.58;ReadPosRankSum=-4.509;SOR=0.600;set=HC	GT:AD:AF:DP	0/1:227,42:0.16:269
chr7	142498624	rs374783458	T	C	180.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.153;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=1.624;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=0.000;QD=1.38;ReadPosRankSum=-4.140;SOR=0.904;set=HC	GT:AD:AF:DP	0/1:121,10:0.08:131
chr7	142498627	rs368978596	T	C	252.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.428;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=5.208;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=0.000;QD=1.81;ReadPosRankSum=-4.749;SOR=1.577;set=HC	GT:AD:AF:DP	0/1:126,14:0.10:140
chr7	142498630	rs372653085	T	A	395.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.370;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=2.753;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=0.000;QD=2.67;ReadPosRankSum=-5.304;SOR=1.266;set=HC	GT:AD:AF:DP	0/1:130,18:0.12:148
chr7	142498635	.	C	CAG	812.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.446;ClippingRankSum=0.000;DP=175;ExcessHet=3.0103;FS=9.423;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=0.000;QD=4.70;ReadPosRankSum=-5.602;SOR=2.039;set=HC	GT:AD:AF:DP	0/1:146,27:0.16:173
chr7	142498638	rs372878243	CCT	C	740.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.192;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=15.020;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.804;QD=3.80;ReadPosRankSum=-5.357;SOR=2.357;set=HC	GT:AD:AF:DP	0/1:163,32:0.16:195
chr7	142498652	rs377324607	CAT	C	1886.73	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:198,64:0.24:262
chr7	142498673	rs376425724	G	A	1559.77	.	AC=1;AF=0.500;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	0/1:263,98:0.27:361
chr7	142498687	rs1799887	T	C	2449.77	.	AC=1;AF=0.500;AN=2;DB;DP=491;set=Intersection	GT:AD:AF:DP	0/1:327,135:0.29:462
chr7	142498699	.	A	G	7144.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.506;ClippingRankSum=0.000;DP=573;ExcessHet=3.0103;FS=1.189;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=4.827;QD=12.56;ReadPosRankSum=0.086;SOR=0.800;set=HC	GT:AD:AF:DP	0/1:373,196:0.34:569
chr7	142498702	.	C	T	7447.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.894;ClippingRankSum=0.000;DP=592;ExcessHet=3.0103;FS=1.890;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=4.890;QD=12.67;ReadPosRankSum=1.350;SOR=0.844;set=HC	GT:AD:AF:DP	0/1:389,199:0.34:588
chr7	142498705	.	ATT	A	7858.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.563;ClippingRankSum=0.000;DP=626;ExcessHet=3.0103;FS=1.191;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=4.926;QD=12.65;ReadPosRankSum=1.930;SOR=0.842;set=HC	GT:AD:AF:DP	0/1:413,208:0.33:621
chr7	142498708	.	A	ACC	7870.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=4.714;ClippingRankSum=0.000;DP=635;ExcessHet=3.0103;FS=1.190;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=4.874;QD=12.49;ReadPosRankSum=1.536;SOR=0.847;set=HC	GT:AD:AF:DP	0/1:416,214:0.34:630
chr7	142498735	rs377360215	A	C	11957.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.920;ClippingRankSum=0.000;DB;DP=845;ExcessHet=3.0103;FS=0.536;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=4.314;QD=14.24;ReadPosRankSum=1.591;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:508,332:0.40:840
chr7	142498738	rs370415932	C	G	11992.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.581;ClippingRankSum=0.000;DB;DP=866;ExcessHet=3.0103;FS=0.534;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=4.306;QD=13.93;ReadPosRankSum=1.774;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:520,341:0.40:861
chr7	142498833	.	A	T	16194.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.896;ClippingRankSum=0.000;DP=1039;ExcessHet=3.0103;FS=0.529;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.69;ReadPosRankSum=0.884;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:599,433:0.42:1032
chr7	142498837	rs1042957	C	T	16064.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.534;ClippingRankSum=0.000;DB;DP=1037;ExcessHet=3.0103;FS=0.529;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.58;ReadPosRankSum=1.219;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:604,427:0.41:1031
chr7	142498897	rs1042959	A	G	10437.77	.	AC=1;AF=0.500;AN=2;DB;DP=1131;set=Intersection	GT:AD:AF:DP	0/1:598,522:0.47:1120
chr7	142499071	rs1042960	T	C	6571.77	.	AC=1;AF=0.500;AN=2;DB;DP=610;set=Intersection	GT:AD:AF:DP	0/1:279,320:0.53:599
chr7	142510296	rs200161528	C	T	2439.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:165,119:0.42:284
chr7	142563360	rs372003411	C	T	1585.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:80,80:0.50:160
chr7	142566163	rs6944571	C	G	9661.77	.	AC=1;AF=0.500;AN=2;DB;DP=973;set=Intersection	GT:AD:AF:DP	0/1:519,443:0.46:962
chr7	142583330	rs17881456	A	C	5141.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr7	142639321	rs8176044	T	C	461.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:25,22:0.47:47
chr7	142724062	rs9885986	C	T	3392.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:149,151:0.50:300
chr7	142749417	rs17164102	C	T	1645.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:66,75:0.53:141
chr7	142749737	rs17164103	C	T	5953.77	.	AC=1;AF=0.500;AN=2;DB;DP=609;set=Intersection	GT:AD:AF:DP	0/1:321,284:0.47:605
chr7	142749953	rs11975892	C	T	6773.77	.	AC=1;AF=0.500;AN=2;DB;DP=748;set=Intersection	GT:AD:AF:DP	0/1:405,327:0.45:732
chr7	142750147	rs10245778	C	T	4578.77	.	AC=1;AF=0.500;AN=2;DB;DP=570;set=Intersection	GT:AD:AF:DP	0/1:343,219:0.39:562
chr7	142832255	rs10234174	C	T	5037.77	.	AC=1;AF=0.500;AN=2;DB;DP=502;set=Intersection	GT:AD:AF:DP	0/1:257,243:0.49:500
chr7	142836440	rs6959713	A	G	1005.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:52,42:0.45:94
chr7	142919731	rs10260248	C	A	3756.77	.	AC=1;AF=0.500;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	0/1:228,182:0.44:410
chr7	142990207	rs11287848	GT	G	124.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.169;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=5.008;MLEAC=1;MLEAF=0.500;MQ=59.17;MQRankSum=0.000;QD=6.93;ReadPosRankSum=-0.329;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:6,12:0.67:18
chr7	143017807	rs10282312	G	T	3043.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr7	143018634	.	G	C	293.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.840;ClippingRankSum=0.000;DP=285;ExcessHet=3.0103;FS=9.895;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.05;ReadPosRankSum=0.144;SOR=1.501;set=HC	GT:AD:AF:DP	0/1:243,38:0.14:281
chr7	143028536	rs2242493	G	A	2104.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr7	143029371	rs2367941	G	T	1834.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr7	143029983	rs7794560	T	C	5905.77	.	AC=1;AF=0.500;AN=2;DB;DP=590;set=Intersection	GT:AD:AF:DP	0/1:305,279:0.48:584
chr7	143036318	rs2272253	G	A	3139.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:113,145:0.56:258
chr7	143036337	rs2272252	C	T	3573.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:150,166:0.53:316
chr7	143036548	rs6464542	T	A	3122.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:148,141:0.49:289
chr7	143039311	rs940864	A	G	2828.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:130,127:0.49:257
chr7	143042837	rs2272251	C	T	1830.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:73,85:0.54:158
chr7	143042983	rs45554138	A	G	1107.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:41,48:0.54:89
chr7	143043240	rs13438232	C	T	6117.77	.	AC=1;AF=0.500;AN=2;DB;DP=737;set=Intersection	GT:AD:AF:DP	0/1:422,311:0.42:733
chr7	143043377	rs56680997	C	G	1736.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.611;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=4.157;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.68;ReadPosRankSum=-0.776;SOR=0.468;set=HC	GT:AD:AF:DP	0/1:113,87:0.43:200
chr7	143043607	rs2242492	G	C	2015.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:90,85:0.49:175
chr7	143043890	rs2242491	A	G	2305.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:66,90:0.58:156
chr7	143043902	rs2242490	C	T	2087.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:60,85:0.59:145
chr7	143043939	rs2242489	T	C	2505.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:64,101:0.61:165
chr7	143054585	rs6958357	A	G	3301.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr7	143057268	rs13244040	C	T	3318.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:111,155:0.58:266
chr7	143078928	rs10808025	C	G	5328.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr7	143079806	rs6464546	G	A	3384.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:163,156:0.49:319
chr7	143088823	rs1804527	T	C	16752.77	.	AC=2;AF=1.00;AN=2;DB;DP=639;set=Intersection	GT:AD:AF:DP	1/1:0,636:1.00:636
chr7	143088867	rs6967117	T	C	13399.77	.	AC=2;AF=1.00;AN=2;DB;DP=484;set=Intersection	GT:AD:AF:DP	1/1:0,481:1.00:481
chr7	143088897	rs62472724	C	T	3225.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:181,157:0.46:338
chr7	143093538	rs10952549	G	A	6447.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr7	143097100	rs4725617	A	G	7350.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr7	143097320	rs7786333	C	T	180.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chr7	143140416	rs58270521	C	T	438.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:17,18:0.51:35
chr7	143141475	rs4595035	T	C	913.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:45,40:0.47:85
chr7	143554451	rs200166862	G	A	142.03	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.534;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=43.91;MQRankSum=0.674;QD=17.75;ReadPosRankSum=-0.157;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:1,7:0.88:8
chr7	143701884	rs728275	C	T	6345.77	.	AC=1;AF=0.500;AN=2;DB;DP=711;set=Intersection	GT:AD:AF:DP	0/1:405,298:0.42:703
chr7	143747481	rs79781351	AC	A	3426.73	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:143,104:0.42:247
chr7	143748364	rs4407791	T	C	4831.77	.	AC=1;AF=0.500;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	0/1:212,226:0.52:438
chr7	143771408	rs59319753	G	C	4660.77	.	AC=1;AF=0.500;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	0/1:231,201:0.47:432
chr7	143771536	rs6951485	G	A	3900.77	.	AC=1;AF=0.500;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	0/1:162,167:0.51:329
chr7	143771937	rs2961135	G	C	4802.77	.	AC=1;AF=0.500;AN=2;DB;DP=465;set=Intersection	GT:AD:AF:DP	0/1:236,218:0.48:454
chr7	143807515	rs2961149	T	G	11053.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.210;ClippingRankSum=0.000;DB;DP=569;ExcessHet=3.0103;FS=0.519;MLEAC=1;MLEAF=0.500;MQ=59.17;MQRankSum=-7.181;QD=19.74;ReadPosRankSum=-0.012;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:275,285:0.51:560
chr7	143807518	rs2951315	T	C	11013.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.009;ClippingRankSum=0.000;DB;DP=582;ExcessHet=3.0103;FS=1.095;MLEAC=1;MLEAF=0.500;MQ=59.19;MQRankSum=-7.203;QD=19.25;ReadPosRankSum=-0.021;SOR=0.599;set=HC	GT:AD:AF:DP	0/1:282,290:0.51:572
chr7	143807674	rs2961150	T	C	2060.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:77,84:0.52:161
chr7	143826603	rs2961160	G	T	5237.77	.	AC=1;AF=0.500;AN=2;DB;DP=525;set=Intersection	GT:AD:AF:DP	0/1:270,249:0.48:519
chr7	143826697	rs2961161	C	G	3933.77	.	AC=1;AF=0.500;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	0/1:159,181:0.53:340
chr7	143826729	rs66549240	ACTT	A	4422.73	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:117,115:0.50:232
chr7	143827198	rs34308692	CT	C	566.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.656;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=1.468;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=0.971;QD=7.46;ReadPosRankSum=-0.489;SOR=0.411;set=HC	GT:AD:AF:DP	0/1:31,45:0.59:76
chr7	143839408	rs1919954	C	T	7774.77	.	AC=1;AF=0.500;AN=2;DB;DP=806;set=Intersection	GT:AD:AF:DP	0/1:412,378:0.48:790
chr7	143839605	rs1919953	T	C	2975.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:133,135:0.50:268
chr7	143884103	rs4726676	G	A	2678.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:133,137:0.51:270
chr7	143982703	rs201194348	G	A	66.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.241;ClippingRankSum=0.000;DB;DP=242;ExcessHet=3.0103;FS=3.726;MLEAC=1;MLEAF=0.500;MQ=47.02;MQRankSum=-3.435;QD=0.28;ReadPosRankSum=0.840;SOR=1.116;set=HC	GT:AD:AF:DP	0/1:209,29:0.12:238
chr7	144015434	rs141871720	A	G	3478.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.698;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.38;MQRankSum=-6.789;QD=28.05;ReadPosRankSum=-0.452;SOR=0.649;set=HC	GT:AD:AF:DP	0/1:38,86:0.69:124
chr7	144015437	rs150229766	C	T	3502.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.353;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.42;MQRankSum=-6.852;QD=27.37;ReadPosRankSum=0.000;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:40,88:0.69:128
chr7	144061119	rs200279177	C	T	935.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.48;QD=23.99;SOR=0.968;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr7	144068163	rs146660641	T	C	977.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.574;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.02;MQRankSum=-2.920;QD=19.56;ReadPosRankSum=-0.241;SOR=0.540;set=HC	GT:AD:AF:DP	0/1:13,37:0.74:50
chr7	144075749	rs1635079	A	G	13678.77	.	AC=2;AF=1.00;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	1/1:0,466:1.00:466
chr7	144094613	rs1208216	G	T	2221.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:110,103:0.48:213
chr7	144095600	rs2699503	A	G	900.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:37,40:0.52:77
chr7	144096068	rs2525702	C	T	897.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:43,42:0.49:85
chr7	144096598	rs11769847	C	T	631.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:84,35:0.29:119
chr7	144096839	rs757388	A	G	1682.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:50,76:0.60:126
chr7	144098896	rs727712	T	C	2083.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:133,102:0.43:235
chr7	144098922	rs727713	G	A	2780.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:186,140:0.43:326
chr7	144098992	rs727714	G	A	2566.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:179,127:0.42:306
chr7	144100595	rs2525703	C	T	168.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chr7	144100874	rs375024030	ACGGGC	A	2618.73	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:58,68:0.54:126
chr7	144107279	rs1208179	A	G	2928.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:140,139:0.50:279
chr7	144227888	rs17169931	T	C	1010.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:65,50:0.43:115
chr7	144227919	rs17169932	C	G	1303.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:83,61:0.42:144
chr7	144228295	rs34346934	G	GA	606.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.356;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=4.069;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.099;QD=5.06;ReadPosRankSum=1.021;SOR=1.177;set=HC	GT:AD:AF:DP	0/1:69,51:0.42:120
chr7	144228318	rs62483152	A	G	841.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:60,43:0.42:103
chr7	144462951	rs3779087	C	T	931.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:68,51:0.43:119
chr7	144532829	rs111798915	A	AG	822.73	.	AC=1;AF=0.500;AN=2;DB;DP=64;MQ=60.17;set=Intersection	GT:AD:AF:DP	0/1:29,30:0.51:59
chr7	144703301	rs7778697	G	A	1327.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:64,58:0.48:122
chr7	145601352	rs6976183	A	G	325.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:8,13:0.62:21
chr7	146997203	rs2692185	T	A	2919.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:118,128:0.52:246
chr7	147074998	rs6945709	G	T	1201.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:47,53:0.53:100
chr7	147092615	rs700308	C	T	440.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:35,20:0.36:55
chr7	147183278	rs4015951	CAAA	C,CA	707.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.587;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.36;MQRankSum=0.408;QD=28.31;ReadPosRankSum=-1.614;SOR=3.611;set=HC	GT:AD:AF:DP	1/2:1,13,11:0.52,0.44:25
chr7	147259374	rs2074715	A	G	695.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:32,31:0.49:63
chr7	147335933	rs113545270	C	CT	495.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.043;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=2.677;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.47;ReadPosRankSum=0.326;SOR=1.008;set=HC	GT:AD:AF:DP	0/1:68,43:0.39:111
chr7	147600604	rs2538962	C	A	3188.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr7	147963925	rs3801974	C	G	459.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:15,17:0.53:32
chr7	147963983	rs10248273	G	C	2921.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr7	147964016	rs3801975	A	G	2081.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:75,90:0.55:165
chr7	147964091	rs3801976	G	A	4433.77	.	AC=1;AF=0.500;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	0/1:206,215:0.51:421
chr7	148080647	rs1637841	T	G	2642.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr7	148106475	rs72268642	C	CTT	6681.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.935;ClippingRankSum=0.000;DB;DP=370;ExcessHet=3.0103;FS=7.992;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.41;ReadPosRankSum=1.164;SOR=1.055;set=HC	GT:AD:AF:DP	0/1:203,160:0.44:363
chr7	148106477	.	C	CTG	7131.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.884;ClippingRankSum=0.000;DP=385;ExcessHet=3.0103;FS=5.311;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.77;ReadPosRankSum=0.105;SOR=0.940;set=HC	GT:AD:AF:DP	0/1:205,175:0.46:380
chr7	148106490	rs9648691	G	A	7683.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.675;ClippingRankSum=0.000;DB;DP=451;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.27;ReadPosRankSum=-1.763;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:230,215:0.48:445
chr7	148143136	rs2530301	A	G	11534.77	.	AC=2;AF=1.00;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	1/1:0,439:1.00:439
chr7	148143386	rs112648232	C	T	590.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:25,25:0.50:50
chr7	148311115	rs11434056	G	GT	5830.73	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr7	148312382	rs6962115	T	G	10677.77	.	AC=2;AF=1.00;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	1/1:0,389:1.00:389
chr7	148312520	rs6962292	T	C	7472.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:1,271:1.00:272
chr7	148463860	rs1014095	T	C	2196.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr7	148464675	rs6956231	T	G	4055.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr7	148484019	rs67104604	A	G	1203.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr7	148485529	rs140011356	CTTTGCTAGT	C	4244.73	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr7	148485603	rs67507356	G	A	8375.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;MQ=60.63;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr7	148494794	rs377047108	ATTT	A	473.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.67;QD=29.61;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr7	148495860	rs67248614	A	G	5536.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:1,172:0.99:173
chr7	148497388	rs59400376	C	T	187.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr7	148497451	rs73158249	A	G	197.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:17,10:0.37:27
chr7	148497463	rs59586477	C	T	864.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr7	148504716	rs3217095	AG	A	4546.73	.	AC=2;AF=1.00;AN=2;DB;DP=152;MQ=60.07;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr7	148506363	rs10268879	T	G	7724.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:3,282:0.99:285
chr7	148529922	rs17552167	C	T	2567.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr7	148543525	rs10274535	A	G	13517.77	.	AC=2;AF=1.00;AN=2;DB;DP=521;set=Intersection	GT:AD:AF:DP	1/1:2,504:1.00:506
chr7	148543693	rs3214332	TA	T	5502.73	.	AC=2;AF=1.00;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	1/1:9,282:0.97:291
chr7	148638572	rs2035216	G	A	785.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:38,36:0.49:74
chr7	148705221	rs2306172	A	G	4795.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr7	148778355	rs34939910	C	A	473.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:17,20:0.54:37
chr7	148801091	rs11525060	G	A	6920.77	.	AC=1;AF=0.500;AN=2;DB;DP=667;set=Intersection	GT:AD:AF:DP	0/1:341,320:0.48:661
chr7	148801337	rs12704061	T	C	5626.77	.	AC=1;AF=0.500;AN=2;DB;DP=549;set=Intersection	GT:AD:AF:DP	0/1:268,269:0.50:537
chr7	148801658	rs1137432	C	T	4469.77	.	AC=1;AF=0.500;AN=2;DB;DP=442;set=Intersection	GT:AD:AF:DP	0/1:223,215:0.49:438
chr7	148809451	rs6464938	T	C	8829.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	1/1:0,337:1.00:337
chr7	148809520	rs10228956	G	A	971.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:67,46:0.41:113
chr7	148823366	rs10251621	A	G	14399.77	.	AC=2;AF=1.00;AN=2;DB;DP=530;set=Intersection	GT:AD:AF:DP	1/1:0,525:1.00:525
chr7	148848257	rs917122	T	C	3483.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:171,163:0.49:334
chr7	148848358	rs917123	G	A	3990.77	.	AC=1;AF=0.500;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	0/1:192,194:0.50:386
chr7	148851012	rs77511833	T	C	3457.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:147,159:0.52:306
chr7	148851213	rs917124	G	A	3487.77	.	AC=1;AF=0.500;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	0/1:204,172:0.46:376
chr7	148863414	rs71990250	CAGCTCCA	C	6470.73	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:140,165:0.54:305
chr7	148873497	rs1568944	T	A	2748.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:128,126:0.50:254
chr7	148875632	rs1202461	T	A	312.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:14,14:0.50:28
chr7	148903984	rs12537763	G	A	1559.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:63,70:0.53:133
chr7	148904293	rs147860582	C	CAAGGTTCTTCATAAG	956.73	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:32,23:0.42:55
chr7	148904343	rs6464946	A	T	1669.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:78,80:0.51:158
chr7	148904624	rs7784122	C	T	1115.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:52,52:0.50:104
chr7	148907849	rs10952805	G	A	5399.77	.	AC=1;AF=0.500;AN=2;DB;DP=502;set=Intersection	GT:AD:AF:DP	0/1:238,260:0.52:498
chr7	148909687	rs1202425	C	T	420.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:19,18:0.49:37
chr7	148936762	.	A	ACGGCGGCGG	6482.73	.	AC=2;AF=1.00;AN=2;DP=153;MQ=60.07;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr7	149130080	rs57185523	C	T	2415.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:95,109:0.53:204
chr7	149133969	rs73166011	T	C	2583.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:100,128:0.56:228
chr7	149148319	rs4727071	T	C	2398.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:119,119:0.50:238
chr7	149152770	rs3735319	A	G	1860.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.142;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.148;QD=9.21;ReadPosRankSum=2.007;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:114,88:0.44:202
chr7	149152906	rs3735318	G	A	3532.77	.	AC=1;AF=0.500;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	0/1:203,169:0.45:372
chr7	149153057	rs73166027	G	C	1397.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:67,68:0.50:135
chr7	149174265	rs4725816	G	A	417.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:15,18:0.55:33
chr7	149256086	rs1978186	C	T	1716.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr7	149317062	rs1808231	C	T	1376.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:67,66:0.50:133
chr7	149317216	rs354056	A	G	4251.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr7	149318409	rs62490571	T	C	1513.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:116,74:0.39:190
chr7	149318703	rs1723716	C	T	1057.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:100,49:0.33:149
chr7	149321505	rs11766297	G	C	287.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:13,13:0.50:26
chr7	149321643	rs71532786	G	A	1204.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:35,58:0.62:93
chr7	149321734	rs62490575	G	A	607.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:17,29:0.63:46
chr7	149321803	rs13236202	T	G	354.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:9,16:0.64:25
chr7	149418127	rs66544404	G	C	2497.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:95,113:0.54:208
chr7	149420099	rs141288433	A	T	2362.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:79,99:0.56:178
chr7	149420820	rs11462346	C	CT	6778.73	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr7	149421061	rs35436848	AC	A	276.73	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:24,12:0.33:36
chr7	149426232	rs855757	C	T	668.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:30,30:0.50:60
chr7	149426305	rs11424737	G	GC	7741.73	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr7	149427409	rs709065	T	G	16725.77	.	AC=2;AF=1.00;AN=2;DB;DP=632;set=Intersection	GT:AD:AF:DP	1/1:0,606:1.00:606
chr7	149427728	rs6966081	T	C	2376.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:94,105:0.53:199
chr7	149461487	rs73168053	T	G	567.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:43,24:0.36:67
chr7	149476666	rs57553723	G	GC	9239.73	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr7	149482903	rs28391402	A	C	439.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.283;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=4.174;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.95;ReadPosRankSum=-1.612;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:100,49:0.33:149
chr7	149483018	rs855683	C	G	425.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:45,20:0.31:65
chr7	149483053	rs855684	T	C	696.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:45,33:0.42:78
chr7	149483098	rs855685	A	G	1177.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:76,62:0.45:138
chr7	149483237	rs77510079	G	A	2180.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:112,103:0.48:215
chr7	149483373	rs855686	A	G	1821.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:63,83:0.57:146
chr7	149484891	rs855688	A	G	3187.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:177,151:0.46:328
chr7	149484906	rs855689	G	T	3068.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:189,150:0.44:339
chr7	149485059	rs709060	T	C	883.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:45,44:0.49:89
chr7	149486574	rs855694	G	C	3170.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr7	149499318	rs2074690	C	T	353.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:13,16:0.55:29
chr7	149500013	rs2074693	C	G	3480.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:139,167:0.55:306
chr7	149500472	rs10952229	A	G	14032.77	.	AC=2;AF=1.00;AN=2;DB;DP=515;set=Intersection	GT:AD:AF:DP	1/1:0,499:1.00:499
chr7	149500992	rs4725830	A	G	2337.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr7	149506211	rs71194663	G	GC	11303.73	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chr7	149511985	rs10952230	A	G	5198.77	.	AC=1;AF=0.500;AN=2;DB;DP=533;set=Intersection	GT:AD:AF:DP	0/1:286,237:0.45:523
chr7	149523195	rs78492471	C	G	6557.77	.	AC=1;AF=0.500;AN=2;DB;DP=599;set=Intersection	GT:AD:AF:DP	0/1:292,302:0.51:594
chr7	149528139	rs35876030	C	A	359.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:21,18:0.46:39
chr7	149544681	rs200471293	GGTGT	G	203.86	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.465;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=29.12;ReadPosRankSum=-0.566;SOR=2.584;set=HC	GT:AD:AF:DP	0/1:1,6:0.86:7
chr7	149556518	rs4725833	C	T	2590.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:157,127:0.45:284
chr7	149558409	rs2240361	G	C	3537.77	.	AC=1;AF=0.500;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	0/1:170,156:0.48:326
chr7	149559273	rs2074700	C	T	6097.77	.	AC=1;AF=0.500;AN=2;DB;DP=562;set=Intersection	GT:AD:AF:DP	0/1:285,273:0.49:558
chr7	149559465	rs2074701	C	T	10374.77	.	AC=1;AF=0.500;AN=2;DB;DP=1007;set=Intersection	GT:AD:AF:DP	0/1:500,493:0.50:993
chr7	149561049	rs3857764	C	G	189.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:12,8:0.40:20
chr7	149572842	rs10240203	G	C	5348.77	.	AC=1;AF=0.500;AN=2;DB;DP=472;set=Intersection	GT:AD:AF:DP	0/1:226,235:0.51:461
chr7	149575707	rs6946997	C	G	1323.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:44,53:0.55:97
chr7	149575725	rs6947011	C	T	1470.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:59,66:0.53:125
chr7	149575747	rs5888369	TG	T	3199.73	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:94,94:0.50:188
chr7	149575884	rs10246226	T	C	2879.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:125,142:0.53:267
chr7	149576818	rs7785847	A	G	3062.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:156,145:0.48:301
chr7	149588429	rs4725317	G	A	386.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.309;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=7.334;MLEAC=1;MLEAF=0.500;MQ=52.80;MQRankSum=-2.014;QD=12.48;ReadPosRankSum=-2.019;SOR=0.091;set=HC	GT:AD:AF:DP	0/1:14,17:0.55:31
chr7	149589343	rs2626759	G	A	4167.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr7	149589496	rs11428600	A	AC	3045.73	.	AC=1;AF=0.500;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	0/1:201,155:0.44:356
chr7	149589599	rs4725318	C	A	683.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:53,33:0.38:86
chr7	149606657	rs199847605	T	C	70.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=35.49;QD=23.43;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr7	149606918	rs200320073	T	TA	373.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.096;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.18;MQRankSum=-2.264;QD=10.68;ReadPosRankSum=3.986;SOR=0.843;set=HC	GT:AD:AF:DP	0/1:12,23:0.66:35
chr7	149981830	rs4725334	T	G	2795.77	.	AC=1;AF=0.500;AN=2;DB;DP=522;set=Intersection	GT:AD:AF:DP	0/1:360,151:0.30:511
chr7	149990080	rs149246619	C	T	976.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.798;ClippingRankSum=0.000;DB;DP=371;ExcessHet=3.0103;FS=0.455;MLEAC=1;MLEAF=0.500;MQ=47.28;MQRankSum=-2.821;QD=2.63;ReadPosRankSum=1.414;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:289,82:0.22:371
chr7	149990114	rs200308078	C	T	1154.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.618;ClippingRankSum=0.000;DB;DP=289;ExcessHet=3.0103;FS=0.483;MLEAC=1;MLEAF=0.500;MQ=46.82;MQRankSum=-2.360;QD=4.00;ReadPosRankSum=0.199;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:211,78:0.27:289
chr7	149990333	.	A	T	108.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.039;ClippingRankSum=0.000;DP=296;ExcessHet=3.0103;FS=23.897;MLEAC=1;MLEAF=0.500;MQ=55.50;MQRankSum=-5.877;QD=0.37;ReadPosRankSum=3.408;SOR=0.621;set=HC	GT:AD:AF:DP	0/1:255,39:0.13:294
chr7	150020489	rs3735174	T	C	221.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:25,13:0.34:38
chr7	150020526	rs3735173	C	T	400.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:31,21:0.40:52
chr7	150033882	rs3735171	A	G	1523.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:87,74:0.46:161
chr7	150034184	rs3735170	T	C	8313.77	.	AC=1;AF=0.500;AN=2;DB;DP=749;set=Intersection	GT:AD:AF:DP	0/1:344,395:0.53:739
chr7	150034378	rs3735169	A	G	2470.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:162,113:0.41:275
chr7	150035459	rs1047586	T	G	2344.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:120,116:0.49:236
chr7	150035500	rs1047575	C	G	2183.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:128,113:0.47:241
chr7	150035526	rs4721	T	G	2036.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:123,101:0.45:224
chr7	150037660	rs1047207	A	G	2721.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:120,130:0.52:250
chr7	150066008	rs3735166	T	C	304.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.109;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.52;ReadPosRankSum=0.637;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:17,15:0.47:32
chr7	150067679	rs3757424	C	A	330.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:5,14:0.74:19
chr7	150067714	rs3757423	C	T	534.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:17,24:0.59:41
chr7	150068371	rs3735165	T	C	5141.77	.	AC=1;AF=0.500;AN=2;DB;DP=551;set=Intersection	GT:AD:AF:DP	0/1:287,252:0.47:539
chr7	150068605	rs17173702	G	A	6962.77	.	AC=1;AF=0.500;AN=2;DB;DP=517;set=Intersection	GT:AD:AF:DP	0/1:319,194:0.38:513
chr7	150068620	rs17173703	C	T	6972.77	.	AC=1;AF=0.500;AN=2;DB;DP=536;set=Intersection	GT:AD:AF:DP	0/1:329,204:0.38:533
chr7	150068933	rs6722	T	C	4963.77	.	AC=1;AF=0.500;AN=2;DB;DP=500;set=Intersection	GT:AD:AF:DP	0/1:259,227:0.47:486
chr7	150093701	rs940453	A	C	4578.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr7	150094851	rs13225910	A	G	8646.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,323:1.00:323
chr7	150095271	rs7393	T	C	5466.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr7	150163837	rs2140595	A	G	4893.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr7	150167857	rs12538709	C	T	33.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.572;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=1.757;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.000;QD=1.30;ReadPosRankSum=-0.335;SOR=1.230;set=HC	GT:AD:AF:DP	0/1:18,8:0.31:26
chr7	150167858	rs12533488	A	T	287.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.584;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=1.757;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.000;QD=11.07;ReadPosRankSum=1.134;SOR=1.449;set=HC	GT:AD:AF:DP	0/1:9,17:0.65:26
chr7	150168058	rs111800874	A	AGAAT	11471.73	.	AC=2;AF=1.00;AN=2;DB;DP=290;MQ=60.15;set=Intersection	GT:AD:AF:DP	1/1:2,259:0.99:261
chr7	150171710	rs60114833	T	C	5279.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr7	150269160	rs7806724	G	T	1528.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:85,73:0.46:158
chr7	150324825	rs3735084	C	T	4593.77	.	AC=1;AF=0.500;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	0/1:193,206:0.52:399
chr7	150327234	rs71893458	CAA	C	323.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.573;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=2.262;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.25;ReadPosRankSum=0.809;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:17,18:0.51:35
chr7	150384048	rs112828849	A	G	357.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=66.83;QD=18.83;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr7	150384193	.	CGTGTGTGTGTGT	C	560.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.625;ClippingRankSum=0.000;DP=63;ExcessHet=3.0103;FS=2.154;MLEAC=1;MLEAF=0.500;MQ=61.53;MQRankSum=0.000;QD=25.49;ReadPosRankSum=0.510;SOR=1.253;set=HC	GT:AD:AF:DP	0/1:5,17:0.77:22
chr7	150389677	rs6952002	G	C	2116.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:136,96:0.41:232
chr7	150416050	rs72264755	GGTGGTTATGCCTATTT	G	1301.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.366;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=1.965;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.14;ReadPosRankSum=-0.244;SOR=0.936;set=HC	GT:AD:AF:DP	0/1:50,36:0.42:86
chr7	150434472	rs6965571	G	A	746.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:28,30:0.52:58
chr7	150437927	rs9657894	C	T	1899.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:58,84:0.59:142
chr7	150438089	rs4725936	T	C	5060.77	.	AC=1;AF=0.500;AN=2;DB;DP=499;set=Intersection	GT:AD:AF:DP	0/1:253,242:0.49:495
chr7	150438161	rs9657898	T	G	2052.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:115,94:0.45:209
chr7	150439500	rs759011	C	T	6408.77	.	AC=1;AF=0.500;AN=2;DB;DP=628;set=Intersection	GT:AD:AF:DP	0/1:320,300:0.48:620
chr7	150440043	rs1046355	C	T	3733.77	.	AC=1;AF=0.500;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	0/1:200,184:0.48:384
chr7	150440192	rs9657881	G	A	2411.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:81,108:0.57:189
chr7	150440243	.	G	T	644.77	.	AC=1;AF=0.500;AN=2;DP=92;set=Intersection	GT:AD:AF:DP	0/1:54,36:0.40:90
chr7	150446703	rs2058450	A	T	3548.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:132,152:0.54:284
chr7	150446792	rs2058449	G	A	6651.77	.	AC=1;AF=0.500;AN=2;DB;DP=628;set=Intersection	GT:AD:AF:DP	0/1:308,319:0.51:627
chr7	150446820	rs2058448	C	T	6730.77	.	AC=1;AF=0.500;AN=2;DB;DP=627;set=Intersection	GT:AD:AF:DP	0/1:299,325:0.52:624
chr7	150446936	rs2058447	A	G	3120.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:160,141:0.47:301
chr7	150447071	rs2058446	G	A	1244.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:52,55:0.51:107
chr7	150487961	rs3757410	G	A	1251.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:44,49:0.53:93
chr7	150488616	rs2302479	A	G	680.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:25,32:0.56:57
chr7	150488840	rs141812679	C	CA	482.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.186;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.54;ReadPosRankSum=1.377;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:32,32:0.50:64
chr7	150490376	rs2072443	C	T	2163.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:102,99:0.49:201
chr7	150490431	rs2072442	C	G	1311.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:60,56:0.48:116
chr7	150490797	rs72471023	GGACA	G	2133.73	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:25,54:0.68:79
chr7	150491084	rs3173833	T	G	10121.77	.	AC=1;AF=0.500;AN=2;DB;DP=988;set=Intersection	GT:AD:AF:DP	0/1:477,496:0.51:973
chr7	150491851	rs61057705	T	G	5490.77	.	AC=1;AF=0.500;AN=2;DB;DP=494;set=Intersection	GT:AD:AF:DP	0/1:229,261:0.53:490
chr7	150491995	rs145375921	CCACACACA	C,CCACACACACACACA	3866.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.198;ClippingRankSum=0.000;DB;DP=272;ExcessHet=3.0103;FS=4.559;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.12;MQRankSum=0.263;QD=29.07;ReadPosRankSum=-0.195;SOR=1.344;set=HC	GT:AD:AF:DP	1/2:3,90,40:0.68,0.30:133
chr7	150493442	rs2075080	C	G	1784.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:71,83:0.54:154
chr7	150498520	rs11767388	T	C	2196.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:83,91:0.52:174
chr7	150498809	rs1127958	G	A	2172.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:92,103:0.53:195
chr7	150498836	rs2075079	C	G	1671.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:60,70:0.54:130
chr7	150499164	.	T	TTTCTC	1138.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.830;ClippingRankSum=0.000;DP=115;ExcessHet=3.0103;FS=1.814;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=0.000;QD=10.95;ReadPosRankSum=0.746;SOR=0.459;set=HC	GT:AD:AF:DP	0/1:65,39:0.38:104
chr7	150499267	rs12668797	C	A	4420.77	.	AC=1;AF=0.500;AN=2;DB;DP=449;MQ=60.02;set=Intersection	GT:AD:AF:DP	0/1:222,217:0.49:439
chr7	150500356	rs741068	T	C	1827.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:98,90:0.48:188
chr7	150500455	rs741067	A	G	2540.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:119,120:0.50:239
chr7	150500520	rs741066	C	T	1488.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:115,76:0.40:191
chr7	150500729	rs741064	A	G	5535.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr7	150501516	rs9088	A	G	3593.77	.	AC=1;AF=0.500;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	0/1:223,177:0.44:400
chr7	150554584	rs41465145	C	T	5697.77	.	AC=1;AF=0.500;AN=2;DB;DP=519;set=Intersection	GT:AD:AF:DP	0/1:244,264:0.52:508
chr7	150555810	rs45455308	G	A	2977.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:176,142:0.45:318
chr7	150556002	rs1049748	T	C	4286.77	.	AC=1;AF=0.500;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	0/1:192,192:0.50:384
chr7	150556055	rs6943147	CG	GC	15228.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,342:1.00:342
chr7	150556803	rs55671932	A	G	819.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.849;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.11;ReadPosRankSum=0.586;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:38,52:0.58:90
chr7	150557390	rs45615934	G	A	618.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:29,26:0.47:55
chr7	150557578	rs11771771	G	A	3862.77	.	AC=1;AF=0.500;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	0/1:196,188:0.49:384
chr7	150558366	rs12539	C	T	4222.77	.	AC=1;AF=0.500;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	0/1:179,192:0.52:371
chr7	150558444	rs34090933	G	GCA	1584.73	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:52,49:0.49:101
chr7	150645534	rs1805123	T	G	2393.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:143,151:0.51:294
chr7	150645682	rs2968860	G	A	13223.77	.	AC=2;AF=1.00;AN=2;DB;DP=501;set=Intersection	GT:AD:AF:DP	1/1:2,496:1.00:498
chr7	150647969	rs2072413	CC	TG	1210.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;JOINED;set=Intersection	GT:AD:AF:DP	0/1:41,30:0.42:71
chr7	150648198	rs1137617	A	G	8844.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:0,334:1.00:334
chr7	150648789	rs1805121	T	C	4679.77	.	AC=1;AF=0.500;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	0/1:201,220:0.52:421
chr7	150648986	rs2072411	G	C	1152.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:88,55:0.38:143
chr7	150652286	rs887586	C	G	1257.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr7	150652419	rs876088	T	C	1791.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:124,96:0.44:220
chr7	150654622	rs11462566	A	AG	2253.73	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr7	150655624	rs758891	T	C	910.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:37,26:0.41:63
chr7	150655643	rs758890	G	A	847.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:28,23:0.45:51
chr7	150672162	rs11410979	T	TC	1209.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr7	150699471	.	A	AAC	37.15	.	AC=2;AF=1.00;AN=2;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=9.29;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr7	150706383	rs753482	C	A	12011.77	.	AC=2;AF=1.00;AN=2;DB;DP=524;set=Intersection	GT:AD:AF:DP	1/1:8,467:0.98:475
chr7	150706436	rs142498418	G	GC	3146.73	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:1,101:0.99:102
chr7	150707488	rs743507	C	T	1365.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr7	150708089	rs891512	A	G	5738.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr7	150708850	rs2256314	G	A	1775.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr7	150709571	rs7830	G	T	5357.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr7	150713636	rs3800787	G	C	6209.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr7	150713902	rs11393607	G	GC	2925.73	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr7	150715817	rs1835428	A	G	12611.77	.	AC=2;AF=1.00;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	1/1:0,429:1.00:429
chr7	150720902	rs13307588	A	G	32352.77	.	AC=2;AF=1.00;AN=2;DB;DP=1229;set=Intersection	GT:AD:AF:DP	1/1:0,1205:1.00:1205
chr7	150729780	.	C	CA	92.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.469;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=6.669;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.38;ReadPosRankSum=0.341;SOR=2.376;set=HC	GT:AD:AF:DP	0/1:26,13:0.33:39
chr7	150731338	rs2303923	G	C	1270.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:47,48:0.51:95
chr7	150747746	rs2288645	A	G	10403.77	.	AC=1;AF=0.500;AN=2;DB;DP=1192;set=Intersection	GT:AD:AF:DP	0/1:662,527:0.44:1189
chr7	150748869	rs10255526	C	G	1371.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:79,67:0.46:146
chr7	150752066	rs891507	T	C	9551.77	.	AC=1;AF=0.500;AN=2;DB;DP=977;set=Intersection	GT:AD:AF:DP	0/1:485,479:0.50:964
chr7	150752608	rs2069456	T	G	1415.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:90,68:0.43:158
chr7	150760076	rs34403003	G	C	1299.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.976;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=2.079;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.40;ReadPosRankSum=-1.847;SOR=0.439;set=HC	GT:AD:AF:DP	0/1:37,60:0.62:97
chr7	150761150	rs6464122	C	G	542.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:20,25:0.56:45
chr7	150761314	rs2303929	G	A	1937.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:92,93:0.50:185
chr7	150761880	rs2303931	C	A	2961.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:163,138:0.46:301
chr7	150763655	rs2229549	T	A	698.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:31,34:0.52:65
chr7	150765065	rs2229550	T	C	1780.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:97,89:0.48:186
chr7	150768786	rs2303937	G	A	3881.77	.	AC=1;AF=0.500;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	0/1:212,185:0.47:397
chr7	150773072	rs2303939	G	C	3408.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:137,150:0.52:287
chr7	150773807	rs7262	A	T	698.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:22,32:0.59:54
chr7	150775306	rs2303942	G	A	541.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:30,22:0.42:52
chr7	150783756	.	TGCC	T	472.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.109;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.91;ReadPosRankSum=-2.370;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:12,13:0.52:25
chr7	150783900	.	C	CG	502.73	.	AC=2;AF=1.00;AN=2;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.70;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr7	150783903	.	T	G	556.77	.	AC=2;AF=1.00;AN=2;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.40;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr7	150783906	.	C	G	781.77	.	AC=2;AF=1.00;AN=2;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=52.12;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr7	150783908	.	C	CG	1042.73	.	AC=2;AF=1.00;AN=2;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=57.93;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr7	150783911	.	A	G	1231.77	.	AC=2;AF=1.00;AN=2;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.38;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr7	150783917	.	T	G	1816.77	.	AC=2;AF=1.00;AN=2;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=55.05;SOR=3.193;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr7	150783919	.	GTCT	G	2221.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=55.54;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr7	150783922	.	T	TGGGG	2221.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=55.54;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr7	150784407	rs13239507	T	C	910.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:48,41:0.46:89
chr7	150811844	.	C	T	73.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.355;ClippingRankSum=-0.000;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.38;ReadPosRankSum=-0.674;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:5,5:0.50:10
chr7	150812493	rs6971966	G	C	416.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.94;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr7	150812683	rs17857291	G	A	68.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.124;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.73;ReadPosRankSum=0.372;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:7,5:0.42:12
chr7	150812739	rs10272090	G	C	151.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,8:0.67:12
chr7	150813977	rs76473497	T	TG	2644.73	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:112,113:0.50:225
chr7	150819673	.	T	TCTC	2128.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.067;ClippingRankSum=0.000;DP=158;ExcessHet=3.0103;FS=0.717;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.480;QD=17.74;ReadPosRankSum=0.562;SOR=0.600;set=HC	GT:AD:AF:DP	0/1:62,58:0.48:120
chr7	150825567	rs2288650	C	T	991.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:58,61:0.51:119
chr7	150864240	rs13241978	G	C	1219.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:89,61:0.41:150
chr7	150873608	rs310598	A	G	2346.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:127,115:0.48:242
chr7	150878260	rs2253592	C	G	2960.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:97,138:0.59:235
chr7	150883761	rs2257090	C	T	4054.77	.	AC=1;AF=0.500;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	0/1:179,190:0.51:369
chr7	150884266	rs34383739	C	CAG	5132.73	.	AC=1;AF=0.500;AN=2;DB;DP=582;MQ=60.06;set=Intersection	GT:AD:AF:DP	0/1:290,193:0.40:483
chr7	150915071	rs1122979	G	A	3664.77	.	AC=1;AF=0.500;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	0/1:209,173:0.45:382
chr7	150915948	rs7782699	C	T	5928.77	.	AC=1;AF=0.500;AN=2;DB;DP=642;set=Intersection	GT:AD:AF:DP	0/1:348,287:0.45:635
chr7	150916114	rs35656219	CAGG	C	5669.73	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:155,147:0.49:302
chr7	150916228	rs6949587	G	A	3701.77	.	AC=1;AF=0.500;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	0/1:184,175:0.49:359
chr7	150918914	rs4726007	G	C	2975.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr7	150919829	rs7812088	G	A	868.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:45,39:0.46:84
chr7	150921296	.	A	AT	124.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.264;ClippingRankSum=0.000;DP=479;ExcessHet=3.0103;FS=4.039;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=0.000;QD=0.35;ReadPosRankSum=-1.562;SOR=1.012;set=HC	GT:AD:AF:DP	0/1:296,61:0.17:357
chr7	150921950	rs6464133	A	G	11408.77	.	AC=2;AF=1.00;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	1/1:0,422:1.00:422
chr7	150931268	rs2608293	C	G	7765.77	.	AC=1;AF=0.500;AN=2;DB;DP=691;set=Intersection	GT:AD:AF:DP	0/1:303,375:0.55:678
chr7	150934162	rs2446065	G	C	639.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:30,33:0.52:63
chr7	150934975	rs2487154	C	G	5992.77	.	AC=1;AF=0.500;AN=2;DB;DP=501;set=Intersection	GT:AD:AF:DP	0/1:215,274:0.56:489
chr7	150936596	rs78729555	G	T	5553.77	.	AC=1;AF=0.500;AN=2;DB;DP=557;set=Intersection	GT:AD:AF:DP	0/1:289,260:0.47:549
chr7	150937074	.	CT	C	369.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.011;ClippingRankSum=0.000;DP=68;ExcessHet=3.0103;FS=3.289;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=1.366;QD=6.06;ReadPosRankSum=-1.759;SOR=1.528;set=HC	GT:AD:AF:DP	0/1:23,38:0.62:61
chr7	150937078	.	T	C	60.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.809;ClippingRankSum=0.000;DP=74;ExcessHet=3.0103;FS=11.399;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=-0.769;QD=0.84;ReadPosRankSum=0.046;SOR=2.368;set=HC	GT:AD:AF:DP	0/1:55,17:0.24:72
chr7	150937377	rs61667463	C	CG	3784.73	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr7	150939193	rs4725398	A	G	1904.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:118,91:0.44:209
chr7	150939359	rs219227	C	T	1729.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:106,89:0.46:195
chr7	150939396	rs219228	C	A	989.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:67,43:0.39:110
chr7	150940657	rs122815	T	C	1540.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr7	150940879	rs182979452	C	T	2112.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:81,101:0.55:182
chr7	150945712	.	C	CT	2610.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.859;ClippingRankSum=0.000;DP=498;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=2.094;QD=6.85;ReadPosRankSum=-0.629;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:213,168:0.44:381
chr7	150972189	rs2072298	G	A	1473.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:82,68:0.45:150
chr7	151038958	rs2142172	T	C	1667.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:78,78:0.50:156
chr7	151048484	rs449081	G	A	1231.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:63,61:0.49:124
chr7	151049002	rs3838706	A	AACAC,ATCACACAC	1457.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=46;set=Intersection	GT:AF:DP	1/2:0.53,0.40:43
chr7	151049025	rs379931	T	C	707.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:50,33:0.40:83
chr7	151049231	rs366355	C	T	2851.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:126,136:0.52:262
chr7	151049337	rs394259	A	G	3046.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr7	151049818	rs444648	C	T	760.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:33,36:0.52:69
chr7	151053043	rs446886	A	G	2345.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:104,108:0.51:212
chr7	151057396	rs3217033	AC	A	11903.73	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:0,342:1.00:342
chr7	151064064	rs386956	C	T	4922.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr7	151064305	rs367191	A	G	1019.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr7	151066098	.	C	CT	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.387;ClippingRankSum=0.000;DP=68;ExcessHet=3.0103;FS=1.525;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.80;ReadPosRankSum=-0.163;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:42,10:0.19:52
chr7	151074015	rs2240629	G	C	1481.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:50,57:0.53:107
chr7	151074296	rs2159158	A	G	1164.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:46,48:0.51:94
chr7	151078735	rs4141455	A	G	309.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:21,16:0.43:37
chr7	151078845	rs4141454	G	A	287.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:20,17:0.46:37
chr7	151097323	rs11767693	A	G	2660.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:173,136:0.44:309
chr7	151164348	rs17635434	G	A	2901.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:160,146:0.48:306
chr7	151168415	rs35526149	CAAT	C	1692.73	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:39,45:0.54:84
chr7	151168534	rs6956899	G	A	2579.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:96,123:0.56:219
chr7	151195328	rs11772458	G	C	1974.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:68,80:0.54:148
chr7	151216353	rs6948477	G	A	369.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:36,21:0.37:57
chr7	151254175	rs8961	T	C	9866.77	.	AC=2;AF=1.00;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	1/1:0,369:1.00:369
chr7	151254445	rs764801	T	C	1225.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr7	151254462	rs764800	G	A	1159.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr7	151262305	rs2302532	A	C	424.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:21,20:0.49:41
chr7	151267397	rs2302530	G	A	460.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:21,20:0.49:41
chr7	151292395	rs35348247	A	AT	3963.73	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr7	151432869	rs1547470	T	C	3420.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr7	151483445	rs12671980	A	G	6216.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr7	151504019	rs9648725	T	C	1641.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:72,75:0.51:147
chr7	151504499	rs10257529	G	A	2104.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:162,108:0.40:270
chr7	151573549	rs75750979	G	A	1081.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:62,47:0.43:109
chr7	151668180	.	C	CTAGA	457	.	AC=2;AF=1.00;AN=2;BRF=0.41;FR=1.0000;HP=2;HapScore=2;MGOF=14;MMLQ=26;MQ=60.0;NF=0;NR=9;PP=457;QD=51.3333333333;SC=CTCTCATTCTCTAGATAGATA;SbPval=1.0;Source=Platypus;TC=17;TCF=1;TCR=16;TR=9;WE=151668188;WS=151668170;set=Platypus	GT:AD:AF:DP	1/1:8,9:0.53:17
chr7	151668224	rs58859718	A	AT	771.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.59;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr7	151668225	.	A	T	391	.	AC=2;AF=1.00;AN=2;BRF=0.27;FR=1.0000;HP=2;HapScore=2;MGOF=26;MMLQ=28;MQ=60.0;NF=4;NR=15;PP=391;QD=22.4090111867;SC=GATAGATAGAAAGAAAACAGT;SbPval=0.57;Source=Platypus;TC=19;TCF=4;TCR=15;TR=19;WE=151668233;WS=151668215;set=Platypus	GT:AD:AF:DP	1/1:0,19:1.00:19
chr7	151668225	rs59993749	A	AGAT,AGATAGAT	711.73	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=39.54;SOR=1.863;set=HC	GT:AD:AF:DP	1/2:0,14,4:0.78,0.22:18
chr7	151680072	rs6960270	T	C	13754.77	.	AC=2;AF=1.00;AN=2;DB;DP=517;set=Intersection	GT:AD:AF:DP	1/1:1,513:1.00:514
chr7	151684168	rs4726127	C	A	821.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr7	151723022	rs72200904	TGCG	T	2690.73	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:2,106:0.98:108
chr7	151810476	rs73161885	A	G	3949.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:146,169:0.54:315
chr7	151818235	rs12531704	C	T	170.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:5,9:0.64:14
chr7	151818777	rs967093	T	C	3423.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr7	151873853	rs6464211	C	T	5344.77	.	AC=1;AF=0.500;AN=2;DB;DP=520;set=Intersection	GT:AD:AF:DP	0/1:257,252:0.50:509
chr7	151882622	rs112646605	TAG	T	69.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.436;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.77;MQRankSum=-9.082;QD=0.83;ReadPosRankSum=-0.458;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:76,8:0.10:84
chr7	151933333	rs148887101	A	G	593.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:18,24:0.57:42
chr7	151945007	rs137949498	C	T	5640.77	.	AC=1;AF=0.500;AN=2;DB;DP=726;set=Intersection	GT:AD:AF:DP	0/1:441,281:0.39:722
chr7	151945071	rs150073007	G	GT	2371.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.127;ClippingRankSum=0.000;DB;DP=1211;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.88;MQRankSum=-0.425;QD=2.00;ReadPosRankSum=1.251;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:1021,162:0.14:1183
chr7	151945140	rs57648310	C	T	1460.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.050;ClippingRankSum=0.000;DB;DP=1194;ExcessHet=3.0103;FS=2.534;MLEAC=1;MLEAF=0.500;MQ=54.91;MQRankSum=-1.005;QD=1.23;ReadPosRankSum=-0.480;SOR=1.045;set=HC	GT:AD:AF:DP	0/1:999,189:0.16:1188
chr7	151945167	rs2537264	G	T	3098.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.635;ClippingRankSum=0.000;DB;DP=1045;ExcessHet=3.0103;FS=8.959;MLEAC=1;MLEAF=0.500;MQ=53.41;MQRankSum=-1.969;QD=2.98;ReadPosRankSum=-5.392;SOR=1.337;set=HC	GT:AD:AF:DP	0/1:810,231:0.22:1041
chr7	151945204	rs4024453	G	A	1385.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.055;ClippingRankSum=0.000;DB;DP=678;ExcessHet=3.0103;FS=74.199;MLEAC=1;MLEAF=0.500;MQ=52.74;MQRankSum=-16.747;QD=2.06;ReadPosRankSum=-0.233;SOR=6.343;set=HC	GT:AD:AF:DP	0/1:573,101:0.15:674
chr7	151962176	rs62478356	T	A	12165.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.671;ClippingRankSum=0.000;DB;DP=3165;ExcessHet=3.0103;FS=0.586;MLEAC=1;MLEAF=0.500;MQ=48.71;MQRankSum=-15.198;QD=3.85;ReadPosRankSum=2.856;SOR=0.626;set=HC	GT:AD:AF:DP	0/1:2281,880:0.28:3161
chr7	151962309	.	G	A	2962	.	AC=1;AF=0.500;AN=2;BRF=0.6;FR=0.5000;HP=3;HapScore=1;MGOF=7;MMLQ=28;MQ=44.15;NF=0;NR=259;PP=2962;QD=20;SC=AATTAACAGTGAAACAATGAA;SbPval=1.0;Source=Platypus;TC=673;TCF=140;TCR=533;TR=259;WE=151962317;WS=151962299;set=Platypus	GT:AD:AF:DP	1/0:414,259:0.38:673
chr7	151970856	rs10454320	T	A	38784.77	.	AC=1;AF=0.500;AN=2;DB;DP=2213;set=Intersection	GT:AD:AF:DP	0/1:558,1652:0.75:2210
chr7	151970931	rs56850341	G	A	9556.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=18.942;ClippingRankSum=0.000;DB;DP=830;ExcessHet=3.0103;FS=62.735;MLEAC=1;MLEAF=0.500;MQ=50.11;MQRankSum=-25.946;QD=11.53;ReadPosRankSum=-3.294;SOR=3.698;set=HC	GT:AD:AF:DP	0/1:469,360:0.43:829
chr7	151970977	rs200020144	C	A	2142.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.334;ClippingRankSum=0.000;DB;DP=429;ExcessHet=3.0103;FS=2.460;MLEAC=1;MLEAF=0.500;MQ=50.13;MQRankSum=6.799;QD=5.01;ReadPosRankSum=-0.588;SOR=0.459;set=HC	GT:AD:AF:DP	0/1:309,119:0.28:428
chr7	152055766	.	G	GA	192.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.825;ClippingRankSum=0.000;DP=147;ExcessHet=3.0103;FS=2.990;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=2.311;QD=1.71;ReadPosRankSum=1.279;SOR=0.418;set=HC	GT:AD:AF:DP	0/1:85,28:0.25:113
chr7	152143044	rs148564556	G	A	5918.77	.	AC=1;AF=0.500;AN=2;DB;DP=576;set=Intersection	GT:AD:AF:DP	0/1:294,275:0.48:569
chr7	152143744	rs6953943	A	G	5195.77	.	AC=1;AF=0.500;AN=2;DB;DP=604;set=Intersection	GT:AD:AF:DP	0/1:341,254:0.43:595
chr7	152373252	rs3218384	C	G	5023.77	.	AC=1;AF=0.500;AN=2;DB;DP=557;set=Intersection	GT:AD:AF:DP	0/1:307,246:0.44:553
chr7	152456909	rs66966963	C	T	343.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:22,18:0.45:40
chr7	152511598	rs112910296	C	T	4778.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr7	152511781	rs142152218	C	T	5024.77	.	AC=1;AF=0.500;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	0/1:199,231:0.54:430
chr7	152513769	rs116164729	G	A	902.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.93;QD=31.13;SOR=3.334;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr7	152520731	rs3864524	T	C	1452.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr7	152549107	rs6944646	C	T	1507.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:70,72:0.51:142
chr7	152550444	rs75649710	T	C	612.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:32,26:0.45:58
chr7	152550499	rs4726215	T	C	4144.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr7	153749753	rs1974615	C	T	426.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:34,19:0.36:53
chr7	153749772	rs374262699	TTGC	T	934.73	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:40,26:0.39:66
chr7	153749805	rs4015718	CT	C	470.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.648;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=1.784;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=1.922;QD=4.62;ReadPosRankSum=-0.046;SOR=0.903;set=HC	GT:AD:AF:DP	0/1:56,46:0.45:102
chr7	153750160	rs199977459	TC	T	951.73	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:12,29:0.71:41
chr7	153750319	.	G	GC	261.75	.	AC=2;AF=1.00;AN=2;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr7	154002466	rs147504439	C	G	734.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:41,36:0.47:77
chr7	154143557	rs34749902	T	C	472.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:12,22:0.65:34
chr7	154237842	rs28645456	T	C	131.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,7:0.64:11
chr7	154429560	rs11243339	C	T	2980.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr7	154429657	rs6972501	T	C	2965.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr7	154461112	rs3807218	A	G	12621.77	.	AC=2;AF=1.00;AN=2;DB;DP=480;set=Intersection	GT:AD:AF:DP	1/1:1,474:1.00:475
chr7	154461248	rs35719981	TTGTGTG	TTG,T	3746.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=140;set=Intersection	GT:AF:DP	1/1:0.99:92
chr7	154564677	.	C	CA	544.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.527;ClippingRankSum=0.000;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.80;ReadPosRankSum=0.706;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:46,48:0.51:94
chr7	154587367	rs10274635	G	A	486.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:38,22:0.37:60
chr7	154587503	rs201537690	AAAAGAAAAG	A	487.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.604;ClippingRankSum=0.000;DB;DP=232;ExcessHet=3.0103;FS=1.922;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.21;ReadPosRankSum=1.888;SOR=0.894;set=HC	GT:AD:AF:DP	0/1:164,57:0.26:221
chr7	154587507	rs3778731	G	A	607.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.888;ClippingRankSum=0.000;DB;DP=220;ExcessHet=3.0103;FS=3.515;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.09;ReadPosRankSum=-0.666;SOR=0.472;set=HC	GT:AD:AF:DP	0/1:133,64:0.32:197
chr7	154592965	rs12531589	C	T	1269.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:65,59:0.48:124
chr7	154596517	rs2280659	G	A	4203.77	.	AC=1;AF=0.500;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	0/1:174,190:0.52:364
chr7	154598639	rs11764611	G	A	2505.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:100,106:0.51:206
chr7	154598908	rs2293357	A	G	4314.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr7	154645406	rs6962284	A	G	1788.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:110,93:0.46:203
chr7	154645419	rs145928686	G	GTTTTC	4830.73	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:133,121:0.48:254
chr7	154667628	rs2293353	A	G	4525.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:2,179:0.99:181
chr7	154667643	rs2230064	G	A	5306.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr7	154672809	rs3817518	G	A	1957.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr7	154679447	rs940378	G	A	17256.77	.	AC=2;AF=1.00;AN=2;DB;DP=669;set=Intersection	GT:AD:AF:DP	1/1:0,657:1.00:657
chr7	154681142	rs11335725	CT	C	871.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.049;ClippingRankSum=0.000;DB;DP=384;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=2.136;QD=3.16;ReadPosRankSum=-0.096;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:153,123:0.45:276
chr7	154681363	rs13232266	A	T	3736.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr7	154735950	rs930436	C	T	1275.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:53,55:0.51:108
chr7	154738409	rs3501	T	C	3611.77	.	AC=1;AF=0.500;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	0/1:184,183:0.50:367
chr7	154748908	rs3817480	G	A	1128.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:70,58:0.45:128
chr7	154751774	rs2272174	G	A	333.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:16,16:0.50:32
chr7	154759671	rs893942	T	C	841.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:57,40:0.41:97
chr7	154760369	rs935037	A	G	1502.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:83,76:0.48:159
chr7	154760666	rs61752011	C	T	2887.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:136,136:0.50:272
chr7	154785362	rs306281	A	G	5510.77	.	AC=1;AF=0.500;AN=2;DB;DP=618;set=Intersection	GT:AD:AF:DP	0/1:317,290:0.48:607
chr7	154862621	rs6320	T	A	17216.77	.	AC=1;AF=0.500;AN=2;DB;DP=1718;set=Intersection	GT:AD:AF:DP	0/1:866,839:0.49:1705
chr7	154876342	rs980442	T	G	2089.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:1,63:0.98:64
chr7	154988584	rs12530990	C	T	1072.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr7	154988908	rs7458114	C	A	4146.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr7	154989054	rs2317164	C	T	4776.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr7	154989807	rs73176654	T	C	4175.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr7	154990003	rs12532373	C	T	17061.77	.	AC=2;AF=1.00;AN=2;DB;DP=657;set=Intersection	GT:AD:AF:DP	1/1:1,644:1.00:645
chr7	155094592	rs9768652	C	T	2026.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:56,89:0.61:145
chr7	155095436	rs9768687	C	A	971.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:46,46:0.50:92
chr7	155095686	.	CTTTT	C	1828.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.463;ClippingRankSum=0.000;DP=226;ExcessHet=3.0103;FS=7.983;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=0.581;QD=14.29;ReadPosRankSum=-0.806;SOR=0.058;set=HC	GT:AD:AF:DP	0/1:53,75:0.59:128
chr7	155150472	rs3922604	G	A	12188.77	.	AC=2;AF=1.00;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	1/1:0,446:1.00:446
chr7	155150560	rs6605563	A	G	16409.77	.	AC=2;AF=1.00;AN=2;DB;DP=596;set=Intersection	GT:AD:AF:DP	1/1:0,589:1.00:589
chr7	155150602	rs6605562	T	C	16959.77	.	AC=2;AF=1.00;AN=2;DB;DP=608;set=Intersection	GT:AD:AF:DP	1/1:0,601:1.00:601
chr7	155150765	rs7456618	C	T	23507.77	.	AC=2;AF=1.00;AN=2;DB;DP=878;set=Intersection	GT:AD:AF:DP	1/1:0,872:1.00:872
chr7	155187575	rs2361680	C	A	314.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:17,14:0.45:31
chr7	155187691	rs2885336	T	G	597.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.288;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.49;ReadPosRankSum=-1.978;SOR=0.409;set=HC	GT:AD:AF:DP	0/1:37,26:0.41:63
chr7	155251433	rs3735653	C	T	2025.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr7	155255332	rs2361689	T	C	7043.77	.	AC=1;AF=0.500;AN=2;DB;DP=662;set=Intersection	GT:AD:AF:DP	0/1:329,325:0.50:654
chr7	155295804	rs35244674	GA	G	2962.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.261;ClippingRankSum=0.000;DB;DP=695;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.330;QD=5.12;ReadPosRankSum=0.233;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:293,286:0.49:579
chr7	155295854	rs7804744	G	A	3411.77	.	AC=1;AF=0.500;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	0/1:243,169:0.41:412
chr7	155301781	rs6947243	A	G	2296.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:107,108:0.50:215
chr7	155437475	rs7786826	T	C	273.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr7	155437725	rs117348825	C	T	2199.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:133,116:0.47:249
chr7	155465422	rs7811556	C	G	900.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr7	155465438	rs10599668	CAAA	C	824.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.830;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=5.972;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.29;ReadPosRankSum=1.736;SOR=1.598;set=HC	GT:AD:AF:DP	1/1:4,33:0.89:37
chr7	155503844	rs200646328	G	GT	264.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.518;ClippingRankSum=0.000;DB;DP=324;ExcessHet=3.0103;FS=0.558;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.84;ReadPosRankSum=0.856;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:261,55:0.17:316
chr7	155503920	rs7800753	A	T	12991.77	.	AC=2;AF=1.00;AN=2;DB;DP=525;set=Intersection	GT:AD:AF:DP	1/1:12,503:0.98:515
chr7	155593438	rs1233560	G	A	2145.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:119,100:0.46:219
chr7	155598879	rs1233554	A	C	1851.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:68,73:0.52:141
chr7	155599300	rs1233555	C	T	2677.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:109,119:0.52:228
chr7	155599382	rs9333618	G	A	1421.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:38,52:0.58:90
chr7	155747865	rs7798508	C	G	6474.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:1,212:1.00:213
chr7	155747907	rs7810074	T	C	4309.77	.	AC=1;AF=0.500;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	0/1:201,206:0.51:407
chr7	155749951	rs35655547	C	T	3205.77	.	AC=1;AF=0.500;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	0/1:281,176:0.39:457
chr7	155749974	rs10440919	GC	AA	9746.77	.	AC=1;AF=0.500;AN=2;DB;DP=425;JOINED;set=Intersection	GT:AD:AF:DP	0/1:174,247:0.59:421
chr7	155750033	rs10256182	A	G	6794.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:1,257:1.00:258
chr7	155755336	rs7807731	C	T	1791.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:83,84:0.50:167
chr7	155755826	rs2007015	A	G	3777.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr7	155757502	rs1551630	T	C	4995.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr7	156432955	rs79924697	G	A	8478.77	.	AC=1;AF=0.500;AN=2;DB;DP=824;set=Intersection	GT:AD:AF:DP	0/1:430,384:0.47:814
chr7	156436769	rs7804211	C	T	1245.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:62,60:0.49:122
chr7	156473779	rs71838136	T	TA	411.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.451;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=1.959;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=1.958;QD=4.79;ReadPosRankSum=-2.721;SOR=0.972;set=HC	GT:AD:AF:DP	0/1:52,34:0.40:86
chr7	156518007	rs2072468	T	C	3014.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr7	156529062	rs10640672	C	CAGT	4666.73	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr7	156685519	rs200299453	G	GC	3265.73	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr7	156685545	rs200101319	A	AC	4228.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.498;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=31.56;ReadPosRankSum=1.313;SOR=1.119;set=HC	GT:AD:AF:DP	1/1:2,132:0.99:134
chr7	156755350	rs12672076	T	C	8009.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:1,293:1.00:294
chr7	156761751	rs9969350	C	T	1901.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr7	156761818	rs2302445	G	A	5689.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr7	156761913	rs2302444	C	T	10768.77	.	AC=2;AF=1.00;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	1/1:0,411:1.00:411
chr7	156762224	rs2302443	G	C	4373.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr7	156762248	rs12919	G	A	4928.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr7	156762446	rs3087905	G	T	1073.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr7	156786920	rs10263255	G	A	584.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:67,34:0.34:101
chr7	156932105	rs59178327	C	T	6783.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr7	156961716	rs35192251	C	A	1915.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:90,90:0.50:180
chr7	156962874	rs6956046	G	A	860.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr7	156967831	rs56852731	C	CTTT	209.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.778;ClippingRankSum=-0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=16.13;ReadPosRankSum=1.973;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:4,9:0.69:13
chr7	156971581	rs870745	T	C	9355.77	.	AC=2;AF=1.00;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	1/1:0,361:1.00:361
chr7	156974354	rs17646047	G	A	1340.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:52,65:0.56:117
chr7	156975058	rs201178438	A	G	1776.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:64,79:0.55:143
chr7	156981672	rs7802642	A	G	4946.77	.	AC=1;AF=0.500;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	0/1:199,232:0.54:431
chr7	156994311	rs2301915	C	T	79.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:7,5:0.42:12
chr7	156994331	rs10629384	C	CTTTT	196.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.510;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.05;ReadPosRankSum=-0.443;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:7,7:0.50:14
chr7	156994544	rs75125615	G	A	2335.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:92,102:0.53:194
chr7	157000176	rs2301914	T	C	9398.77	.	AC=2;AF=1.00;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	1/1:0,361:1.00:361
chr7	157023721	rs2301947	T	C	576.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:27,23:0.46:50
chr7	157049530	rs1182373	T	G	869.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:48,38:0.44:86
chr7	157049809	rs2301946	G	A	2627.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:132,118:0.47:250
chr7	157151234	rs3802100	C	T	274.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:18,13:0.42:31
chr7	157156151	rs3802096	C	T	703.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:21,29:0.58:50
chr7	157159423	rs3779591	G	A	1069.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:28,41:0.59:69
chr7	157162068	rs9692250	T	C	2809.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:173,143:0.45:316
chr7	157162103	rs12672981	A	G	2301.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:141,119:0.46:260
chr7	157208617	rs1009135	C	T	5278.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr7	157234112	rs11977865	G	A	2695.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:156,127:0.45:283
chr7	157234787	rs12698061	G	T	1102.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.688;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.67;MQRankSum=1.577;QD=18.69;ReadPosRankSum=0.938;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:27,32:0.54:59
chr7	157234816	rs12698062	A	G	1130.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:32,35:0.52:67
chr7	157234912	rs12669046	A	G	465.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.322;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.81;MQRankSum=0.855;QD=7.51;ReadPosRankSum=1.424;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:37,25:0.40:62
chr7	157235034	.	T	G	76	.	AC=1;AF=0.500;AN=2;BRF=0.41;FR=0.5000;HP=2;HapScore=2;MGOF=18;MMLQ=24;MQ=51.33;NF=4;NR=2;PP=76;QD=18.4618687579;SC=GCTCTTCCGGTCGGCGCCTGA;SbPval=0.18;Source=Platypus;TC=18;TCF=7;TCR=11;TR=6;WE=157235042;WS=157235024;set=Platypus	GT:AD:AF:DP	1/0:12,6:0.33:18
chr7	157235229	rs6974109	T	C	311.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:22,17:0.44:39
chr7	157235364	rs6950818	C	G	54.77	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:3,3:0.50:6
chr7	157261127	rs34002063	C	T	877.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:24,31:0.56:55
chr7	157261201	rs4716743	T	G	5328.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr7	157261258	rs4716744	C	T	20176.77	.	AC=2;AF=1.00;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	1/1:0,442:1.00:442
chr7	157261275	rs4716745	C	T	23722.77	.	AC=2;AF=1.00;AN=2;DB;DP=521;set=Intersection	GT:AD:AF:DP	1/1:0,518:1.00:518
chr7	157261292	rs4716746	A	G	25623.77	.	AC=2;AF=1.00;AN=2;DB;DP=621;set=Intersection	GT:AD:AF:DP	1/1:0,616:1.00:616
chr7	157261945	rs2109830	A	G	6093.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr7	157261953	rs11449038	C	CG	6264.73	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr7	157262170	rs7801907	T	C	5567.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr7	157262226	rs7778458	G	A	2512.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr7	157262920	rs7806450	T	C	922.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr7	157263015	rs7784276	C	T	1256.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.34;QD=43.34;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr7	157263025	rs7783247	GA	CG	1231.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=57.24;QD=43.99;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr7	157263050	rs7802789	A	G	1096.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.90;QD=43.87;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr7	157263093	rs7783385	G	C	331.78	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.25;QD=47.40;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr7	157263391	.	G	T	1270	.	AC=2;AF=1.00;AN=2;BRF=0.49;FR=1.0000;HP=2;HapScore=1;MGOF=71;MMLQ=22;MQ=57.88;NF=38;NR=37;PP=1270;QD=17.3969495006;SC=CGCTGGCCTGGGTTGGGTGTG;SbPval=0.45;Source=Platypus;TC=84;TCF=44;TCR=40;TR=75;WE=157263399;WS=157263381;set=Platypus	GT:AD:AF:DP	1/1:9,75:0.89:84
chr7	157263410	.	C	T	1561	.	AC=2;AF=1.00;AN=2;BRF=0.51;FR=1.0000;HP=2;HapScore=1;MGOF=61;MMLQ=22;MQ=58.71;NF=40;NR=44;PP=1561;QD=18.9972763398;SC=TGTCCGTGTGCCCGGTGCTGG;SbPval=0.52;Source=Platypus;TC=84;TCF=40;TCR=44;TR=84;WE=157263418;WS=157263400;set=Platypus	GT:AD:AF:DP	1/1:0,84:1.00:84
chr7	157263532	rs7785035	C	T	2192.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr7	157318407	.	TACTGTCGG	CACCGTCTG,CAGTGTCGC	2224	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.4;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=26;MMLQ=24;MQ=57.71;NF=17,12;NR=5,3;PP=2224,1380;QD=103.975812494;SC=GGGCCGTGTGTACTGTCGGAG;SbPval=0.79;Source=Platypus;TC=44;TCF=31;TCR=13;TR=22,15;WE=157318423;WS=157318397;set=Platypus	GT:AF:DP	0/1:0.50:44
chr7	157318438	.	G	C	993	.	AC=1;AF=0.500;AN=2;BRF=0.41;FR=0.5000;HP=1;HapScore=1;MGOF=47;MMLQ=24;MQ=58.41;NF=36;NR=15;PP=993;QD=20.1523767166;SC=GCCGTGTGCAGTGTCGCAGGG;SbPval=0.66;Source=Platypus;TC=59;TCF=40;TCR=19;TR=51;WE=157318446;WS=157318428;set=Platypus	GT:AD:AF:DP	1/0:8,51:0.86:59
chr7	157333542	rs1124400	C	T	3694.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr7	157361564	rs7789467	C	T	9944.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	1/1:3,346:0.99:349
chr7	157361734	rs221294	T	C	19575.77	.	AC=2;AF=1.00;AN=2;DB;DP=726;set=Intersection	GT:AD:AF:DP	1/1:0,717:1.00:717
chr7	157367205	rs146248159	T	TGA	2904.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.900;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=0.896;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.69;ReadPosRankSum=-1.825;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:26,102:0.80:128
chr7	157369564	rs221301	C	G	3592.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr7	157370645	rs736940	G	A	2617.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr7	157370688	rs122004	C	G	3814.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr7	157387984	rs78328889	G	C	3519.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:132,168:0.56:300
chr7	157396697	rs17853260	G	A	12963.77	.	AC=2;AF=1.00;AN=2;DB;DP=496;set=Intersection	GT:AD:AF:DP	1/1:2,482:1.00:484
chr7	157406819	rs10247739	A	C	5401.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.42;SOR=1.585;set=HC	GT:AD:AF:DP	1/1:0,197:1.00:197
chr7	157414064	rs1130502	G	A	5906.73	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:1,214:1.00:215
chr7	157462117	rs5888726	G	GCA	2012.73	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:69,70:0.50:139
chr7	157462425	rs755703	T	C	1193.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:70,61:0.47:131
chr7	157462464	rs1079359	A	G	697.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:36,30:0.45:66
chr7	157800838	rs143545915	AGT	A	6021.73	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr7	157800899	rs12666418	C	T	9274.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	1/1:0,344:1.00:344
chr7	157873975	rs3800863	T	C	1012.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:40,50:0.56:90
chr7	157903478	rs3800861	A	G	9750.77	.	AC=1;AF=0.500;AN=2;DB;DP=936;set=Intersection	GT:AD:AF:DP	0/1:449,478:0.52:927
chr7	157926349	rs17847428	T	G	620.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:54,29:0.35:83
chr7	157929223	rs3800858	G	A	1942.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:105,88:0.46:193
chr7	157929246	rs3839696	G	GA	2388.73	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:163,128:0.44:291
chr7	157930974	rs3752366	C	T	1394.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.956;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.67;ReadPosRankSum=0.320;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:52,37:0.42:89
chr7	157930979	rs3752367	C	G	1462.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.595;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.814;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.24;ReadPosRankSum=0.524;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:55,41:0.43:96
chr7	157931119	rs1130500	A	G	4924.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:171,138:0.45:309
chr7	157931144	rs1130499	C	T	5084.77	.	AC=1;AF=0.500;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	0/1:184,148:0.45:332
chr7	157931263	rs3752371	G	C	2330.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:130,119:0.48:249
chr7	157959620	rs10277232	C	T	336.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:16,11:0.41:27
chr7	157959636	rs1130498	G	A	535.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:20,19:0.49:39
chr7	157959879	rs1130497	C	T	5091.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:150,139:0.48:289
chr7	157959895	rs1130496	C	T	5318.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:170,149:0.47:319
chr7	157959911	rs1130495	A	G	11770.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	1/1:0,343:1.00:343
chr7	157997673	rs17847433	C	A	355.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:13,15:0.54:28
chr7	158055796	.	ACACACACACTG	A	2979	.	AC=1;AF=0.500;AN=2;BRF=0.5;FR=0.5000;HP=2;HapScore=1;MGOF=17;MMLQ=24;MQ=59.8;NF=57;NR=52;PP=2979;QD=20;SC=CACACACTGCACACACACACT;SbPval=0.46;Source=Platypus;TC=178;TCF=96;TCR=82;TR=109;WE=158055822;WS=158055784;set=Platypus	GT:AD:AF:DP	0/1:69,109:0.61:178
chr7	158055802	.	ACAC	A	5324.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.129;ClippingRankSum=0.000;DP=243;ExcessHet=3.0103;FS=4.821;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.09;ReadPosRankSum=-0.599;SOR=1.027;set=HC	GT:AD:AF:DP	0/1:97,144:0.60:241
chr7	158055806	.	TGCACACAC	T	5264.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.262;ClippingRankSum=0.000;DP=270;ExcessHet=3.0103;FS=6.156;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.72;ReadPosRankSum=-0.782;SOR=1.070;set=HC	GT:AD:AF:DP	0/1:122,145:0.54:267
chr7	158055814	.	C	T	2962	.	AC=1;AF=0.500;AN=2;BRF=0.5;FR=0.5000;HP=2;HapScore=1;MGOF=17;MMLQ=22;MQ=59.88;NF=74;NR=36;PP=2962;QD=20;SC=ACTGCACACACATACACATAT;SbPval=0.63;Source=Platypus;TC=241;TCF=157;TCR=84;TR=110;WE=158055822;WS=158055784;set=Platypus	GT:AD:AF:DP	0/1:131,110:0.46:241
chr7	158055850	rs77811094	TCA	T	12639.73	.	AC=1;AF=0.500;AN=2;DB;DP=672;set=Intersection	GT:AD:AF:DP	0/1:313,349:0.53:662
chr7	158109771	rs150376550	G	A	286.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:22,12:0.35:34
chr7	158325310	rs55857496	C	CAA	4943.73	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:160,119:0.43:279
chr7	158325316	rs34189096	C	A	5251.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:178,149:0.46:327
chr7	158325338	rs12670231	G	A	4339.77	.	AC=1;AF=0.500;AN=2;DB;DP=470;set=Intersection	GT:AD:AF:DP	0/1:252,213:0.46:465
chr7	158325572	rs4909238	T	C	745.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:32,35:0.52:67
chr7	158380131	.	T	TC	435.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.752;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=8.729;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.68;ReadPosRankSum=0.364;SOR=2.608;set=HC	GT:AD:AF:DP	0/1:32,13:0.29:45
chr7	158380138	rs200168427	G	GA	747.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.350;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=1.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.00;ReadPosRankSum=-0.705;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:47,21:0.31:68
chr7	158384305	rs67404380	CTGTG	C	3018.73	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:91,81:0.47:172
chr7	158384590	rs10277152	T	C	1046.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:47,43:0.48:90
chr7	158424508	rs11973267	A	G	69.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:17,5:0.23:22
chr7	158438186	rs2290393	G	A	3623.77	.	AC=1;AF=0.500;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	0/1:194,175:0.47:369
chr7	158444975	rs1466210	T	G	1881.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:81,88:0.52:169
chr7	158445267	rs5888763	C	CA	157.73	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:10,10:0.50:20
chr7	158455089	rs4484634	G	A	1336.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:63,63:0.50:126
chr7	158456710	rs10227735	C	T	370.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:20,16:0.44:36
chr7	158457458	rs3816466	A	G	4900.77	.	AC=1;AF=0.500;AN=2;DB;DP=501;set=Intersection	GT:AD:AF:DP	0/1:246,247:0.50:493
chr7	158468437	rs1530967	G	A	804.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:22,33:0.60:55
chr7	158473339	rs2305470	G	T	1406.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:54,62:0.53:116
chr7	158476106	rs6970374	C	T	4187.77	.	AC=1;AF=0.500;AN=2;DB;DP=508;set=Intersection	GT:AD:AF:DP	0/1:276,224:0.45:500
chr7	158476148	rs6969248	G	A	4135.77	.	AC=1;AF=0.500;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	0/1:256,202:0.44:458
chr7	158476271	rs6956496	T	C	846.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:58,36:0.38:94
chr7	158480274	rs41271193	T	C	128.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr7	158482318	rs73167204	T	C	115.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:5,5:0.50:10
chr7	158527051	rs3750052	T	C	2009.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:150,103:0.41:253
chr7	158527260	rs3763413	T	G	492.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:32,22:0.41:54
chr7	158528158	rs3816461	C	G	5435.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr7	158528170	rs7787974	G	A	6026.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr7	158528233	rs3816462	A	G	1548.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:177,87:0.33:264
chr7	158528254	rs34974906	G	A	1547.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:182,83:0.31:265
chr7	158528269	rs35914882	C	G	1655.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:170,85:0.33:255
chr7	158528357	rs35865957	C	T	1078.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:80,56:0.41:136
chr7	158528443	rs3816463	T	G	364.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:13,15:0.54:28
chr7	158529560	rs6961811	C	T	1023.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:41,41:0.50:82
chr7	158529704	rs6960873	G	A	5990.77	.	AC=1;AF=0.500;AN=2;DB;DP=594;set=Intersection	GT:AD:AF:DP	0/1:299,289:0.49:588
chr7	158529889	rs2305467	T	G	1859.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:90,81:0.47:171
chr7	158531641	rs7803766	G	A	553.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:28,25:0.47:53
chr7	158531692	rs7804970	C	T	1620.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:59,74:0.56:133
chr7	158531888	rs7780879	G	A	3361.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.520;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.69;ReadPosRankSum=0.966;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:99,91:0.48:190
chr7	158531893	rs7800556	A	G	3372.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.430;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.27;ReadPosRankSum=0.031;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:89,86:0.49:175
chr7	158532007	rs7804422	T	C	534.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:21,23:0.52:44
chr7	158534163	rs66689505	T	TG	707.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr7	158534372	rs57686648	G	A	13632.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.331;ClippingRankSum=0.000;DB;DP=696;ExcessHet=3.0103;FS=0.518;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.79;ReadPosRankSum=-0.720;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:337,352:0.51:689
chr7	158534381	rs59980573	G	C	13861.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.744;ClippingRankSum=0.000;DB;DP=721;ExcessHet=3.0103;FS=0.518;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.41;ReadPosRankSum=-0.111;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:348,366:0.51:714
chr7	158534690	rs34849374	CTT	C	610.73	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:36,18:0.33:54
chr7	158534707	rs35420830	T	A	144.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.388;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=3.990;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.62;ReadPosRankSum=0.869;SOR=1.536;set=HC	GT:AD:AF:DP	0/1:26,14:0.35:40
chr7	158536154	rs2305472	A	G	899.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:27,42:0.61:69
chr7	158536267	rs2305473	T	C	2219.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:157,114:0.42:271
chr7	158536345	rs2305475	A	G	1177.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:166,69:0.29:235
chr7	158536376	rs2305476	A	C	1882.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:169,65:0.28:234
chr7	158536388	rs2305477	A	C	1601.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:166,59:0.26:225
chr7	158536402	rs71547563	C	G	1585.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.286;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=3.707;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.48;ReadPosRankSum=0.579;SOR=0.979;set=HC	GT:AD:AF:DP	0/1:160,52:0.25:212
chr7	158536408	rs71547564	T	C	1491.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.832;ClippingRankSum=0.000;DB;DP=205;ExcessHet=3.0103;FS=2.980;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.38;ReadPosRankSum=1.218;SOR=0.961;set=HC	GT:AD:AF:DP	0/1:155,47:0.23:202
chr7	158536411	rs71547565	T	C	1472.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.114;ClippingRankSum=0.000;DB;DP=203;ExcessHet=3.0103;FS=4.098;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.36;ReadPosRankSum=1.985;SOR=1.078;set=HC	GT:AD:AF:DP	0/1:156,44:0.22:200
chr7	158536422	rs71547566	C	G	1496.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.611;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=6.227;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.72;ReadPosRankSum=0.596;SOR=1.176;set=HC	GT:AD:AF:DP	0/1:147,47:0.24:194
chr7	158536429	rs61362305	A	G	1496.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.145;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=6.377;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.00;ReadPosRankSum=0.689;SOR=1.185;set=HC	GT:AD:AF:DP	0/1:142,45:0.24:187
chr7	158536465	rs66795622	T	G	779.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:95,43:0.31:138
chr7	158552072	rs34089418	CAAG	C	751.73	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:17,20:0.54:37
chr7	158552331	rs896859	C	G	2523.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:142,122:0.46:264
chr7	158552398	rs896860	C	T	2803.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr7	158555706	rs844521	C	T	7106.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr7	158557692	rs35421678	G	A	925.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:61,41:0.40:102
chr7	158560621	rs2602542	A	C	1026.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:67,46:0.41:113
chr7	158566138	rs842447	T	C	7323.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr7	158566217	rs842448	C	T	4298.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr7	158586138	rs2602552	T	C	1504.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr7	158590512	rs2788501	T	A	2441.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr7	158590547	rs11404991	G	GA,GAA	1758.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.983;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=1.737;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.15;MQRankSum=0.755;QD=13.03;ReadPosRankSum=0.327;SOR=0.919;set=HC	GT:AD:AF:DP	1/2:29,71,35:0.53,0.26:135
chr7	158590740	rs13233513	A	T	2783.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:125,131:0.51:256
chr7	158591589	rs13222407	G	C	3927.77	.	AC=1;AF=0.500;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	0/1:207,196:0.49:403
chr7	158591851	rs2709855	C	T	1362.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr7	158621637	rs4599756	G	A	304.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:11,15:0.58:26
chr7	158649260	rs2657386	C	T	463.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:11,13:0.54:24
chr7	158649280	rs2788473	T	C	499.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:20,14:0.41:34
chr7	158649304	rs2788472	T	C	716.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:26,24:0.48:50
chr7	158649373	rs2657385	A	G	325.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:23,19:0.45:42
chr7	158662182	rs842695	G	A	4524.77	.	AC=1;AF=0.500;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	0/1:158,216:0.58:374
chr7	158662250	rs712199	T	C	4009.77	.	AC=1;AF=0.500;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	0/1:191,197:0.51:388
chr7	158662511	rs3057377	T	TTTTAAAC	1250.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.342;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=2.367;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.90;ReadPosRankSum=0.546;SOR=1.129;set=HC	GT:AD:AF:DP	0/1:42,32:0.43:74
chr7	158662689	rs2308132	CTT	C	5283.73	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:125,137:0.52:262
chr7	158662698	rs842696	T	C	5174.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:119,129:0.52:248
chr7	158664074	rs145233696	TGAA	T	5483.73	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:151,146:0.49:297
chr7	158672476	rs2709859	C	G	9076.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:1,341:1.00:342
chr7	158672619	rs2788478	A	G	3332.77	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:194,167:0.46:361
chr7	158694530	rs842703	T	C	530.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:24,26:0.52:50
chr7	158715219	rs2730238	A	G	1564.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:79,70:0.47:149
chr7	158718793	rs2527188	A	G	1325.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:38,61:0.62:99
chr7	158719084	rs2244789	C	T	1720.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:82,77:0.48:159
chr7	158723014	rs2730241	T	C	633.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:26,25:0.49:51
chr7	158726798	rs34181207	T	TC	1337.73	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:44,41:0.48:85
chr7	158727015	rs35962377	C	CT	1551.73	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:89,69:0.44:158
chr7	158727276	rs2657331	T	A	1498.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:79,64:0.45:143
chr7	158727303	rs2657332	G	T	938.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:41,38:0.48:79
chr7	158738611	rs2527201	G	T	146.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:17,8:0.32:25
chr7	158827401	rs1017033	A	G	2518.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr7	158829285	rs2730223	T	C	1446.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr7	158835631	rs2540353	A	G	3443.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr7	158851234	rs2098349	T	G	10772.77	.	AC=2;AF=1.00;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	1/1:0,411:1.00:411
chr7	158851804	rs2730257	C	T	2744.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr7	158896436	rs17837874	G	A	1288.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:83,62:0.43:145
chr7	158896517	rs2270313	G	A	2864.77	.	AC=1;AF=0.500;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	0/1:219,151:0.41:370
chr7	158902425	rs3793232	T	C	4073.77	.	AC=1;AF=0.500;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	0/1:178,188:0.51:366
chr7	158902567	rs3750071	G	A	7062.77	.	AC=1;AF=0.500;AN=2;DB;DP=684;set=Intersection	GT:AD:AF:DP	0/1:344,332:0.49:676
chr7	158935333	rs439204	G	C	2109.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr7	159026034	rs148623047	G	C	390.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:61,23:0.27:84
chr8	191076	rs10488369	G	A	625.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:15,25:0.62:40
chr8	194836	rs62486593	C	T	1717.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:23,68:0.75:91
chr8	194884	rs2906331	C	T	634.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:10,24:0.71:34
chr8	195254	rs2074718	C	A	2385.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:75,101:0.57:176
chr8	196447	rs62486594	G	A	184.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr8	280241	rs7388619	A	G	1431.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:142,79:0.36:221
chr8	280691	rs73522128	G	A	186.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:14,9:0.39:23
chr8	280915	rs117761543	C	T	1185.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:120,67:0.36:187
chr8	281022	rs11997640	A	G	465.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:60,27:0.31:87
chr8	328251	rs144179040	A	G	429.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.724;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=40.11;MQRankSum=0.798;QD=14.82;ReadPosRankSum=1.254;SOR=1.460;set=HC	GT:AD:AF:DP	0/1:10,19:0.66:29
chr8	362999	rs71223333	T	TAATG	313.73	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:13,7:0.35:20
chr8	363192	rs10090550	G	A	2682.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:100,130:0.57:230
chr8	400168	rs2290073	C	G	212.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:8,9:0.53:17
chr8	413193	rs3735924	T	C	3474.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:84,158:0.65:242
chr8	413288	rs3735923	A	G	739.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:18,26:0.59:44
chr8	417533	rs874074	A	C	987.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:20,40:0.67:60
chr8	417836	rs17745485	G	T	3588.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:75,147:0.66:222
chr8	441457	rs1064416	C	T	2089.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr8	442389	rs3779745	G	A	732.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:16,32:0.67:48
chr8	442755	rs17813338	T	C	3638.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:102,171:0.63:273
chr8	494658	rs71202629	GGGCGGC	G	1526.73	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:53,42:0.44:95
chr8	494804	rs10105131	C	G	1221.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr8	565232	rs1669694	C	G	8476.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr8	566417	rs13276545	C	T	500.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr8	566429	rs13255197	A	C	926.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.13;SOR=3.816;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr8	566432	rs13276566	C	G	959.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.73;SOR=3.352;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr8	566460	rs13276586	C	G	1076.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr8	566619	rs68122960	A	G	3248.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.78;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:0,126:1.00:126
chr8	566660	rs35578938	C	T	1660.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.55;SOR=0.854;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr8	577101	rs336433	A	G	4662.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr8	577249	rs12547464	G	C	3889.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr8	607380	rs1669658	A	G	557.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr8	607766	rs4735812	C	G	7856.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr8	607779	rs4735813	G	T	7888.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr8	608034	rs10090260	T	C	9469.77	.	AC=2;AF=1.00;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	1/1:0,362:1.00:362
chr8	608153	rs10090386	T	G	4960.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:2,186:0.99:188
chr8	608279	rs1703925	A	G	570.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr8	618728	rs2271263	A	G	4204.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr8	623156	rs6559065	G	C	966.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr8	642357	rs1703896	A	G	893.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:80,42:0.34:122
chr8	676191	rs12549425	A	G	5313.77	.	AC=1;AF=0.500;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	0/1:135,250:0.65:385
chr8	676277	rs12549443	A	G	11593.77	.	AC=1;AF=0.500;AN=2;DB;DP=871;set=Intersection	GT:AD:AF:DP	0/1:330,533:0.62:863
chr8	676339	rs12549459	A	G	7061.77	.	AC=1;AF=0.500;AN=2;DB;DP=582;set=Intersection	GT:AD:AF:DP	0/1:244,332:0.58:576
chr8	677063	rs11782509	G	A	1179.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:28,49:0.64:77
chr8	681206	rs11781283	G	C	5884.77	.	AC=1;AF=0.500;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	0/1:159,259:0.62:418
chr8	947830	rs9650538	A	C	1468.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:129,77:0.37:206
chr8	960303	rs35654511	T	TCA	12163.73	.	AC=1;AF=0.500;AN=2;DB;DP=642;set=Intersection	GT:AD:AF:DP	0/1:315,312:0.50:627
chr8	1496767	rs2906568	C	G	8814.77	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:141,224:0.61:365
chr8	1496788	rs2906569	A	G	9543.77	.	AC=1;AF=0.500;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	0/1:176,260:0.60:436
chr8	1514009	rs2301963	C	A	872.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:91,47:0.34:138
chr8	1616640	rs4565482	G	A	3321.77	.	AC=1;AF=0.500;AN=2;DB;DP=451;set=Intersection	GT:AD:AF:DP	0/1:267,179:0.40:446
chr8	1749388	rs7017381	C	T	873.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:147,61:0.29:208
chr8	1749410	rs7003112	T	A	892.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:133,58:0.30:191
chr8	1749513	rs12541297	C	T	352.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:40,19:0.32:59
chr8	1765371	rs6980781	G	A	867.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:80,48:0.38:128
chr8	1806041	.	G	GATCT,GATCTATCT	304.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=33.86;SOR=4.615;set=HC	GT:AD:AF:DP	1/2:0,5,4:0.56,0.44:9
chr8	1806045	rs28650492	G	T	534.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.57;QD=38.20;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr8	1814588	rs57422654	GAC	G	383.73	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:23,19:0.45:42
chr8	1844701	rs73671032	G	A	505.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:73,28:0.28:101
chr8	1846562	rs755543	C	T	1346.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:154,73:0.32:227
chr8	1857591	rs2294039	G	A	1390.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:87,71:0.45:158
chr8	1900799	.	A	C	846.77	.	AC=1;AF=0.500;AN=2;DP=51;set=Intersection	GT:AD:AF:DP	0/1:16,34:0.68:50
chr8	1900855	rs7832438	A	G	3723.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr8	1901110	rs74808197	G	C	1581.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr8	1901177	rs80299596	A	G	398.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr8	1905132	rs3735876	G	A	11496.77	.	AC=2;AF=1.00;AN=2;DB;DP=442;set=Intersection	GT:AD:AF:DP	1/1:0,430:1.00:430
chr8	2005414	rs7833424	C	T	1066.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr8	2005624	rs3765206	G	A	5707.77	.	AC=1;AF=0.500;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	0/1:114,255:0.69:369
chr8	2005676	rs3765208	A	G	9298.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:0,353:1.00:353
chr8	2005883	rs17064618	C	T	1622.77	.	AC=1;AF=0.500;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	0/1:252,100:0.28:352
chr8	2007116	rs7461903	A	G	1749.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr8	2007163	rs2294055	C	G	991.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:73,42:0.37:115
chr8	2007230	rs6558591	A	C	8803.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr8	2020366	rs13251504	A	C	274.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.603;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.60;MQRankSum=0.000;QD=11.95;ReadPosRankSum=0.437;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:10,13:0.57:23
chr8	2020377	rs150521018	G	GATGCTCTCTGCCCTTCGGCCATGAAAGCCTCCATCGTTTC,GATGCTCTCTGCCCTTCGGCCCTGAAAGCCTCCATCGTTTC	3365.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.71;QD=88.57;SOR=3.500;set=HC	GT:AD:AF:DP	1/2:0,26,12:0.68,0.32:38
chr8	2021421	rs2272720	G	T	953.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.106;ClippingRankSum=0.000;DB;DP=242;ExcessHet=3.0103;FS=2.519;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.01;ReadPosRankSum=-1.651;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:174,64:0.27:238
chr8	2024207	rs7822836	A	C	3251.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr8	2024437	rs3817699	C	T	2097.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.094;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=1.958;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.84;ReadPosRankSum=0.069;SOR=0.984;set=HC	GT:AD:AF:DP	0/1:30,58:0.66:88
chr8	2024446	rs3817700	C	T	1860.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.121;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.97;ReadPosRankSum=-0.579;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:24,45:0.65:69
chr8	2033653	rs77385556	C	T	350.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.98;SOR=3.767;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr8	2037811	rs2294060	G	C	2696.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:76,115:0.60:191
chr8	2037833	rs2294061	G	C	3543.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:103,160:0.61:263
chr8	2040104	rs2235121	C	T	1421.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:97,73:0.43:170
chr8	2040181	rs17064685	T	G	3886.77	.	AC=1;AF=0.500;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:132,188:0.59:320
chr8	2040337	rs6420202	T	C	3977.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr8	2040415	rs893877	G	A	301.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:29,14:0.33:43
chr8	2042036	rs7841053	C	T	3130.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:53,134:0.72:187
chr8	2042070	rs7828132	T	C	3141.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;MQ=60.17;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr8	2044046	rs58868465	A	G	1544.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:27,58:0.68:85
chr8	2044363	rs7834633	A	G	3299.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr8	2044376	rs7815778	GG	AC	4397.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr8	2044426	rs7820357	C	A	1604.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr8	2046526	rs7817175	T	C	1814.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr8	2046880	rs2294067	G	C	635.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr8	2048640	rs3779838	C	A	4952.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr8	2048811	rs4876227	A	C	12990.77	.	AC=2;AF=1.00;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	1/1:0,351:1.00:351
chr8	2048831	rs968381	A	G	4729.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:83,201:0.71:284
chr8	2050383	rs2294070	A	T	401.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:50,21:0.30:71
chr8	2050596	rs2294072	A	G	2007.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:34,81:0.70:115
chr8	2054012	rs12677887	C	T	737.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:34,31:0.48:65
chr8	2054066	rs17684416	A	G	1871.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:66,82:0.55:148
chr8	2054195	rs3817706	C	G	5532.77	.	AC=1;AF=0.500;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	0/1:134,239:0.64:373
chr8	2054476	rs33927116	GA	G	201.73	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:16,14:0.47:30
chr8	2056569	rs1978898	C	T	1908.77	.	AC=1;AF=0.500;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:208,109:0.34:317
chr8	2057090	rs2280895	C	T	927.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr8	2057131	rs77802404	T	G	918.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:23,40:0.63:63
chr8	2064121	rs12548396	C	T	1504.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:39,70:0.64:109
chr8	2071002	rs6558607	T	C	330.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:26,15:0.37:41
chr8	2071174	rs17854780	T	C	5737.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.194;ClippingRankSum=0.000;DB;DP=407;ExcessHet=3.0103;FS=3.380;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=-0.633;QD=14.17;ReadPosRankSum=0.933;SOR=0.957;set=HC	GT:AD:AF:DP	0/1:152,253:0.62:405
chr8	2071261	rs71270475	A	AGAC	11673.73	.	AC=2;AF=1.00;AN=2;DB;DP=280;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.31;QD=44.39;SOR=0.830;set=HC	GT:AD:AF:DP	1/1:0,263:1.00:263
chr8	2071306	rs6998711	A	G	6863.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.14;QD=44.57;SOR=1.157;set=HC	GT:AD:AF:DP	1/1:0,154:1.00:154
chr8	2071309	rs6998712	A	T	6831.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.14;QD=44.95;SOR=1.091;set=HC	GT:AD:AF:DP	1/1:0,152:1.00:152
chr8	2071673	rs2280898	T	C	1182.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr8	2077072	rs2280902	A	G	2886.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:57,121:0.68:178
chr8	2091227	rs2280905	A	C	3840.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:94,168:0.64:262
chr8	2091248	rs17752076	A	G	4319.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:103,200:0.66:303
chr8	2092484	rs10503170	C	T	1226.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:49,51:0.51:100
chr8	2092803	rs1063523	A	G	5507.77	.	AC=1;AF=0.500;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	0/1:142,238:0.63:380
chr8	2112041	rs1036688	A	G	1871.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:88,89:0.50:177
chr8	2112080	rs33945248	G	GTT	2668.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.190;ClippingRankSum=0.000;DB;DP=238;ExcessHet=3.0103;FS=2.682;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.97;ReadPosRankSum=0.574;SOR=0.934;set=HC	GT:AD:AF:DP	0/1:92,131:0.59:223
chr8	2148429	rs2618847	T	A	2012.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.73;SOR=2.059;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr8	2148429	.	TGC	AGT	710	.	AC=2;AF=1.00;AN=2;BRF=0.29;FR=1.0000;HP=1;HapScore=1;MGOF=9;MMLQ=25;MQ=60.0;NF=26;NR=12;PP=710;QD=20.0912598648;SC=TGTGTGTGCATGCGTGTGTGC;SbPval=0.36;Source=Platypus;TC=44;TCF=32;TCR=12;TR=38;WE=2148439;WS=2148419;set=Platypus	GT:AD:AF:DP	1/1:6,38:0.86:44
chr8	2148431	rs2618846	C	T	2012.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.76;SOR=1.931;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr8	2148550	rs2618845	G	A	3528.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr8	2148587	rs138518302	TATGTGTGTACATATGTAC	T	3770.73	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr8	2148771	rs7008255	C	T	604.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:75,37:0.33:112
chr8	2148832	rs12547598	A	C	626.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:92,39:0.30:131
chr8	2796277	rs585000	C	T	8975.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:0,334:1.00:334
chr8	2799981	rs6997981	G	C	1908.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;MQ=60.03;set=Intersection	GT:AD:AF:DP	0/1:208,106:0.34:314
chr8	2806920	rs5741961	G	GAAAGAAAAGA	4184.73	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr8	2808860	rs1513337	T	G	6442.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr8	2813083	rs4875856	G	C	10123.77	.	AC=2;AF=1.00;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	1/1:0,373:1.00:373
chr8	2832139	rs667595	C	G	6048.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr8	2836102	rs615578	C	G	3882.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr8	2909992	rs6558702	G	A	2933.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr8	2910020	rs6558703	A	G	4698.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr8	2910223	rs6420209	C	T	2986.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr8	2910289	rs7004774	A	G	732.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr8	2954348	rs3112	C	A	1048.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr8	2964003	rs10503192	T	C	4826.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr8	2965107	rs59028493	G	C	104.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr8	2965122	rs113534820	C	CTGTTTT	1005.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr8	2965209	rs1531351	A	G	2805.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr8	2965244	rs3824271	T	C	3553.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr8	2966072	rs3802291	G	T	1754.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr8	2966351	.	A	AT	223.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.275;ClippingRankSum=0.000;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.17;ReadPosRankSum=-0.703;SOR=1.127;set=HC	GT:AD:AF:DP	0/1:9,13:0.59:22
chr8	2967609	rs898510	G	A	108.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:20,7:0.26:27
chr8	2967631	rs898511	G	C	158.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.864;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.07;ReadPosRankSum=-0.088;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:28,11:0.28:39
chr8	2967639	rs898512	G	T	1521.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr8	2967905	rs73183532	AG	GA	1173.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.540;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=1.696;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.77;ReadPosRankSum=0.537;SOR=0.934;set=HC	GT:AD:AF:DP	0/1:75,34:0.31:109
chr8	2975905	rs2045638	A	G	532.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:66,32:0.33:98
chr8	3015556	rs3802295	A	G	567.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:37,27:0.42:64
chr8	3038525	rs259859	T	A	358.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:10,14:0.58:24
chr8	3045230	rs17319192	G	A	210.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:34,12:0.26:46
chr8	3046635	rs898501	G	T	747.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:99,42:0.30:141
chr8	3059365	rs5888954	TA	T	714.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr8	3141555	rs10099968	A	G	658.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr8	3141586	rs4875508	T	A	1753.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr8	3165207	rs10103770	A	G	859.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:127,47:0.27:174
chr8	3165471	rs10089504	C	A	811.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.932;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=1.130;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.64;ReadPosRankSum=0.630;SOR=0.945;set=HC	GT:AD:AF:DP	0/1:68,26:0.28:94
chr8	3165478	rs10089513	C	G	744.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.533;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.87;ReadPosRankSum=1.149;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:61,23:0.27:84
chr8	3165777	rs10091831	G	A	233.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:25,11:0.31:36
chr8	3165814	rs1393843	A	C	2057.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr8	3166082	rs6558762	A	C	1471.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:50,62:0.55:112
chr8	3200877	rs2161752	C	T	1505.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:186,89:0.32:275
chr8	3201012	rs156075	C	T	4333.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr8	3201034	rs156076	G	T	3234.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr8	3205389	rs11136608	C	T	122.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:18,7:0.28:25
chr8	3205423	rs75454001	G	T	230.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:36,13:0.27:49
chr8	3205460	rs73173112	G	T	519.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.110;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.15;ReadPosRankSum=-1.133;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:70,31:0.31:101
chr8	3216948	rs34858861	TA	T	231.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.299;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.36;MQRankSum=1.319;QD=6.10;ReadPosRankSum=0.017;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:15,23:0.61:38
chr8	3224825	rs35870800	CG	C	1999.73	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:31,51:0.62:82
chr8	3224829	rs34455214	G	A	2008.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:31,51:0.62:82
chr8	3226919	rs270096	C	T	6760.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr8	3253768	rs3802303	C	T	1919.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:1,72:0.99:73
chr8	3253939	rs3802304	A	G	3608.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.01;SOR=1.220;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr8	3253942	rs3802305	A	G	3559.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.06;SOR=1.207;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr8	3253997	rs3802306	G	A	732.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr8	3263758	rs12543118	A	G	3437.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.854;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.65;ReadPosRankSum=0.305;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:2,127:0.98:129
chr8	3265590	rs10088378	C	T	12280.77	.	AC=2;AF=1.00;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	1/1:0,452:1.00:452
chr8	3265845	rs11775235	C	T	1278.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr8	3267263	rs13274162	A	G	119.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:13,7:0.35:20
chr8	3351017	rs7846697	C	G	400.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:24,17:0.41:41
chr8	3351094	rs7845810	G	A	815.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:94,45:0.32:139
chr8	3351116	rs10539369	GAGA	G	1756.73	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:122,53:0.30:175
chr8	3351264	rs9314495	G	A	3581.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:75,152:0.67:227
chr8	3351307	rs13260183	T	G	937.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:92,49:0.35:141
chr8	3351345	rs13251599	C	T	546.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:39,28:0.42:67
chr8	3432692	rs71850597	TAA	T,TA	495.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.029;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=13.582;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.65;MQRankSum=0.777;QD=13.05;ReadPosRankSum=0.508;SOR=3.392;set=HC	GT:AD:AF:DP	1/2:5,15,18:0.39,0.47:38
chr8	3443799	rs111428344	G	GA,GAA	2040.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.310;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=1.957;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.19;MQRankSum=0.425;QD=18.22;ReadPosRankSum=0.148;SOR=0.368;set=HC	GT:AD:AF:DP	1/2:9,79,24:0.71,0.21:112
chr8	3443840	rs34200940	GA	G,GAA	401.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.110;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=8.73;ReadPosRankSum=0.087;SOR=1.179;set=HC	GT:AD:AF:DP	1/2:7,23,16:0.50,0.35:46
chr8	3566106	rs10105577	T	C	6262.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr8	3566161	rs10105599	T	G	2706.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr8	3807319	rs2740867	C	G	442.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:16,18:0.53:34
chr8	3807528	rs6984912	C	T	3071.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:93,141:0.60:234
chr8	3807553	rs11786061	G	A	2884.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:82,134:0.62:216
chr8	3855302	rs1863475	G	A	188.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:18,11:0.38:29
chr8	3855369	rs11303985	GA	G	1856.73	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr8	4277636	rs112873242	C	CA	443.73	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:50,29:0.37:79
chr8	4494811	rs2617007	T	G	1346.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr8	4495107	rs2617008	G	C	3107.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr8	4495166	.	ATTTTTTTTTTTTTTTTTTTTTT	A	1956	.	AC=1;AF=0.500;AN=2;BRF=0.36;FR=0.5000;HP=20;HapScore=3;MGOF=30;MMLQ=23;MQ=55.4;NF=0;NR=7;PP=1956;QD=279.857142857;SC=ACTTTAGCCAATTTTTTTTTT;SbPval=1.0;Source=Platypus;TC=25;TCF=0;TCR=25;TR=7;WE=4495197;WS=4495156;set=Platypus	GT:AD:AF:DP	1/0:18,7:0.28:25
chr8	4495167	rs73506879	T	G	94.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.060;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=1.796;MLEAC=1;MLEAF=0.500;MQ=59.38;MQRankSum=0.694;QD=3.64;ReadPosRankSum=-0.116;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:19,7:0.27:26
chr8	4495209	.	G	A	36	.	AC=1;AF=0.500;AN=2;BRF=0.45;FR=0.5000;HP=1;HapScore=2;MGOF=128;MMLQ=24;MQ=46.46;NF=1;NR=6;PP=36;QD=10.110173221;SC=TTTTTGAGACGGAGTCTCGCT;SbPval=0.4;Source=Platypus;TC=14;TCF=1;TCR=13;TR=7;WE=4495217;WS=4495199;set=Platypus	GT:AD:AF:DP	1/0:7,7:0.50:14
chr8	6264130	rs2305023	G	C	3906.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:70,172:0.71:242
chr8	6264358	.	CCTCCCCCGCTGCCTGTCCCACCAAAACCCCCTGCTCCTGCTCT	C	531.73	.	AC=1;AF=0.500;AN=2;DP=50;set=Intersection	GT:AD:AF:DP	0/1:10,19:0.66:29
chr8	6272185	rs2440437	G	T	986.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr8	6272399	rs2305022	G	T	3173.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr8	6272477	rs2515415	A	G	1286.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.51;SOR=2.694;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr8	6272481	rs2442545	C	G	1253.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=48.22;SOR=2.670;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr8	6272532	rs2515417	T	A	310.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.85;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr8	6272540	rs3214738	TG	T	267.77	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.63;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr8	6272543	rs55687318	A	C	241.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.31;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr8	6288879	rs2251956	A	T	481.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.34;SOR=2.179;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr8	6296550	rs2442513	G	T	2652.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr8	6299532	rs2053618	A	G	7981.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr8	6299559	rs140161935	C	A	5558.77	.	AC=1;AF=0.500;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	0/1:172,258:0.60:430
chr8	6302183	rs930557	G	C	8189.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;MQ=59.96;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr8	6302418	rs2515569	A	G	7705.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr8	6312880	rs2515575	C	T	884.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr8	6335072	rs41311412	T	G	703.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:15,32:0.68:47
chr8	6357235	rs2916716	A	T	125.03	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:1,6:0.86:7
chr8	6357307	rs2916715	T	C	409.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:6,18:0.75:24
chr8	6371114	rs13278243	A	G	800.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:16,35:0.69:51
chr8	6371129	rs13277236	C	T	1606.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.317;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=11.694;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-0.903;QD=28.19;ReadPosRankSum=-0.845;SOR=2.584;set=HC	GT:AD:AF:DP	0/1:17,40:0.70:57
chr8	6371133	rs35473795	C	T	1556.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.435;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=10.702;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-0.931;QD=26.84;ReadPosRankSum=-0.533;SOR=2.494;set=HC	GT:AD:AF:DP	0/1:18,40:0.69:58
chr8	6372033	rs2916736	T	G	292.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:13,13:0.50:26
chr8	6372112	rs2916735	G	A	1210.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:44,54:0.55:98
chr8	6372172	rs2979671	T	C	2896.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:75,129:0.63:204
chr8	6377433	rs1961222	C	T	2482.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:61,110:0.64:171
chr8	6378763	rs3020221	C	T	3038.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:67,136:0.67:203
chr8	6385023	rs186347515	A	G	157.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:10,9:0.47:19
chr8	6389889	rs6559167	C	A,G	6627.77	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=290;set=Intersection	GT:AF:DP	1/2:0.72,0.27:283
chr8	6390079	rs2515482	G	A	932.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.973;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=1.562;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.36;ReadPosRankSum=2.049;SOR=1.140;set=HC	GT:AD:AF:DP	0/1:18,39:0.68:57
chr8	6390095	rs10714353	TA	T	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.675;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.19;ReadPosRankSum=-2.182;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:21,9:0.30:30
chr8	6420534	rs3739391	A	G	1256.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr8	6478956	rs2936531	A	G	10601.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.11;SOR=1.126;set=HC	GT:AD:AF:DP	1/1:0,235:1.00:235
chr8	6478960	rs11137040	C	G	10798.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.26;SOR=1.096;set=HC	GT:AD:AF:DP	1/1:0,244:1.00:244
chr8	6478986	rs2912010	C	T	8657.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:1,330:1.00:331
chr8	6479042	rs1057090	C	T	12312.77	.	AC=2;AF=1.00;AN=2;DB;DP=469;set=Intersection	GT:AD:AF:DP	1/1:1,466:1.00:467
chr8	6479178	rs2912016	C	A	9018.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr8	6479282	rs11137041	G	T	2944.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr8	6582485	rs2980686	A	C	538.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:55,30:0.35:85
chr8	6588164	.	T	C	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.212;ClippingRankSum=0.000;DP=95;ExcessHet=3.0103;FS=4.749;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.37;ReadPosRankSum=-2.949;SOR=0.230;set=HC	GT:AD:AF:DP	0/1:81,12:0.13:93
chr8	6588392	rs59149072	A	AT	331.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.009;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=1.052;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=2.207;QD=3.35;ReadPosRankSum=-0.332;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:62,37:0.37:99
chr8	6605453	rs6651450	T	C	391.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:33,19:0.37:52
chr8	6669949	rs2553728	T	C	897.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr8	6673377	rs11338621	CA	C	20468.73	.	AC=2;AF=1.00;AN=2;DB;DP=533;MQ=60.16;set=Intersection	GT:AD:AF:DP	1/1:0,525:1.00:525
chr8	6681256	rs9772979	A	C	1394.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr8	6686791	rs2741087	C	T	1786.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:51,82:0.62:133
chr8	6690173	rs2978902	G	C	904.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:48,45:0.48:93
chr8	6690215	rs2978901	G	C	1562.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:69,77:0.53:146
chr8	6690276	rs2741098	T	C	2174.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:82,103:0.56:185
chr8	6692909	rs2978895	G	C	477.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:14,23:0.62:37
chr8	6692968	rs2977806	C	T	670.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:28,31:0.53:59
chr8	6793540	rs736227	C	T	7569.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr8	6793581	rs2738100	A	G	7059.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:2,266:0.99:268
chr8	6794207	rs2239667	G	A	5042.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr8	6913031	rs2272719	G	A	1540.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:177,87:0.33:264
chr8	7274308	rs202022216	A	G	211.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=30.26;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr8	7308386	rs1042797	T	C	7050.77	.	AC=1;AF=0.500;AN=2;DB;DP=707;set=Intersection	GT:AD:AF:DP	0/1:354,349:0.50:703
chr8	7308729	rs2294141	G	C	3525.77	.	AC=1;AF=0.500;AN=2;DB;DP=509;set=Intersection	GT:AD:AF:DP	0/1:314,187:0.37:501
chr8	7308798	rs4840280	A	G	5197.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr8	7340323	rs78817522	A	G	3419.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.738;ClippingRankSum=0.000;DB;DP=229;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.32;MQRankSum=-0.653;QD=14.93;ReadPosRankSum=0.146;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:77,152:0.66:229
chr8	7347054	rs199678025	G	A	111.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.292;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=39.00;MQRankSum=-0.000;QD=13.97;ReadPosRankSum=-0.022;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:3,5:0.62:8
chr8	7686216	rs150372518	G	A	88.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.319;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.98;MQRankSum=0.272;QD=11.10;ReadPosRankSum=-0.732;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:3,5:0.62:8
chr8	7686323	rs201085281	G	A	451.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.364;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.47;MQRankSum=-0.511;QD=11.89;ReadPosRankSum=0.000;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:14,24:0.63:38
chr8	7718187	rs3177011	T	G	2284.77	.	AC=1;AF=0.500;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	0/1:243,130:0.35:373
chr8	7718266	rs3860876	A	T	5561.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.06;QD=27.53;SOR=1.755;set=HC	GT:AD:AF:DP	1/1:0,202:1.00:202
chr8	8176221	rs13269488	C	T	4279.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr8	8176387	rs143409664	C	CGGGGCG	1677.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.337;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=47.94;ReadPosRankSum=1.191;SOR=5.728;set=HC	GT:AD:AF:DP	1/1:1,34:0.97:35
chr8	8176554	rs12549973	C	T	2218.77	.	AC=1;AF=0.500;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	0/1:276,128:0.32:404
chr8	8176825	rs6601691	A	G	3528.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr8	8234077	rs4840952	G	C	3331.77	.	AC=1;AF=0.500;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	0/1:269,178:0.40:447
chr8	8234192	rs4840953	G	C	2072.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:169,103:0.38:272
chr8	8234218	rs4840954	CG	TA	3781.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;JOINED;set=Intersection	GT:AD:AF:DP	0/1:186,106:0.36:292
chr8	8234714	rs3896980	C	T	737.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.088;ClippingRankSum=0.000;DB;DP=227;ExcessHet=3.0103;FS=7.917;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.34;ReadPosRankSum=0.667;SOR=1.253;set=HC	GT:AD:AF:DP	0/1:165,56:0.25:221
chr8	8234868	rs150979349	C	CGCCGCT	3079.73	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:151,81:0.35:232
chr8	8643387	rs10903311	G	A	648.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr8	8643582	rs2271340	C	G	10961.77	.	AC=2;AF=1.00;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	1/1:0,407:1.00:407
chr8	8643725	rs2271341	T	A	2375.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr8	8654898	rs3827812	C	T	2987.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:70,135:0.66:205
chr8	8655023	rs3748144	C	T	3731.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr8	8747537	rs399123	T	C	6818.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr8	8747894	rs429433	A	G	9846.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	1/1:0,346:1.00:346
chr8	8860620	rs2288672	T	C	2167.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr8	8860709	rs28510464	T	G	413.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:4,16:0.80:20
chr8	8866661	rs9329175	G	A	4970.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:93,213:0.70:306
chr8	8869199	rs9650616	T	G	1273.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:38,60:0.61:98
chr8	8869277	rs28665409	G	A	517.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:15,22:0.59:37
chr8	8873646	rs3895823	T	C	654.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:13,27:0.68:40
chr8	8875764	rs7822129	G	T	2590.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:96,120:0.56:216
chr8	8887476	.	A	T	1973.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.060;ClippingRankSum=0.000;DP=423;ExcessHet=3.0103;FS=0.574;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=2.226;QD=4.71;ReadPosRankSum=0.224;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:298,121:0.29:419
chr8	8887542	rs140242735	TAAC	T	2930.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.856;ClippingRankSum=0.000;DB;DP=341;ExcessHet=3.0103;FS=1.501;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=2.321;QD=8.96;ReadPosRankSum=-0.288;SOR=0.595;set=HC	GT:AD:AF:DP	0/1:238,89:0.27:327
chr8	8905786	rs11433078	G	GT	85.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.050;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.09;ReadPosRankSum=0.387;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:30,11:0.27:41
chr8	8905926	rs2921379	A	G	7483.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr8	8998262	rs434238	CT	TG	897.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;JOINED;set=Intersection	GT:AD:AF:DP	0/1:39,25:0.39:64
chr8	9435789	.	G	T	1210.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.161;ClippingRankSum=0.000;DP=93;ExcessHet=3.0103;FS=0.813;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.16;ReadPosRankSum=-1.955;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:34,58:0.63:92
chr8	9537635	rs12114182	G	A	808.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr8	9538135	.	A	C	239.77	.	AC=1;AF=0.500;AN=2;DP=28;set=Intersection	GT:AD:AF:DP	0/1:16,11:0.41:27
chr8	9563797	rs11343041	CT	C	1268.73	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:18,83:0.82:101
chr8	9564437	rs7006985	A	G	4045.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr8	9564600	rs12542457	T	C	376.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr8	9577794	rs72301704	A	AT	1718.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr8	9577804	rs5025210	C	A	1849.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr8	9577940	rs6601360	T	C	6139.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr8	9593081	rs4841208	A	C	2852.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:1,93:0.99:94
chr8	9619159	.	G	GA	108.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.676;ClippingRankSum=0.000;DP=140;ExcessHet=3.0103;FS=2.089;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=2.740;QD=0.91;ReadPosRankSum=-0.217;SOR=0.450;set=HC	GT:AD:AF:DP	0/1:95,25:0.21:120
chr8	10065325	.	C	CT	101.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.565;ClippingRankSum=0.000;DP=72;ExcessHet=3.0103;FS=2.881;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.50;ReadPosRankSum=0.728;SOR=0.299;set=HC	GT:AD:AF:DP	0/1:50,18:0.26:68
chr8	10102863	rs4841293	A	G	951.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr8	10210990	rs111889058	ACCGGAGGC	A	1450.73	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:22,37:0.63:59
chr8	10211175	rs6601444	C	T	2862.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:90,134:0.60:224
chr8	10285810	rs3750314	T	C	1639.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:145,89:0.38:234
chr8	10285825	rs10903326	T	G	5529.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr8	10383226	rs4521726	C	G	4393.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr8	10388749	rs4841366	G	A	4343.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:1,162:0.99:163
chr8	10390452	rs4406360	C	T	5002.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr8	10396054	rs6601483	A	C	3987.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr8	10464307	rs12542104	G	A	166.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:19,9:0.32:28
chr8	10464755	rs55642448	C	T	1849.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:195,99:0.34:294
chr8	10464885	rs56382513	T	C	2101.77	.	AC=1;AF=0.500;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	0/1:215,109:0.34:324
chr8	10465063	rs183570817	G	T	5028.77	.	AC=1;AF=0.500;AN=2;DB;DP=665;set=Intersection	GT:AD:AF:DP	0/1:393,267:0.40:660
chr8	10465097	rs4354268	C	T	7790.77	.	AC=1;AF=0.500;AN=2;DB;DP=678;set=Intersection	GT:AD:AF:DP	0/1:284,379:0.57:663
chr8	10465748	rs11783478	T	C	5263.77	.	AC=1;AF=0.500;AN=2;DB;DP=880;set=Intersection	GT:AD:AF:DP	0/1:581,285:0.33:866
chr8	10465771	rs11785822	G	T	28233.77	.	AC=2;AF=1.00;AN=2;DB;DP=881;set=Intersection	GT:AD:AF:DP	1/1:0,870:1.00:870
chr8	10465942	rs28446662	T	A	4698.77	.	AC=1;AF=0.500;AN=2;DB;DP=656;set=Intersection	GT:AD:AF:DP	0/1:401,244:0.38:645
chr8	10466482	rs13267180	G	A	6161.77	.	AC=1;AF=0.500;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	0/1:153,271:0.64:424
chr8	10467124	rs4841399	G	C	1579.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:188,87:0.32:275
chr8	10467207	rs4840498	C	A	9654.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:0,340:1.00:340
chr8	10467637	.	T	TCCTCTAACTGCACCCTCTCTTCTTGCAGCCCTTCTATTACTTTAGTCC	18040.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.315;ClippingRankSum=0.000;DP=1411;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.71;MQRankSum=0.778;QD=25.16;ReadPosRankSum=-4.408;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:436,281:0.39:717
chr8	10467652	rs4840501	G	C	9846.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.813;ClippingRankSum=0.000;DB;DP=1586;ExcessHet=3.0103;FS=0.525;MLEAC=1;MLEAF=0.500;MQ=59.74;MQRankSum=-2.250;QD=9.56;ReadPosRankSum=-5.626;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:556,474:0.46:1030
chr8	10468172	rs4840502	G	A	14125.77	.	AC=2;AF=1.00;AN=2;DB;DP=535;set=Intersection	GT:AD:AF:DP	1/1:0,526:1.00:526
chr8	10469233	rs35602868	A	G	3270.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:131,153:0.54:284
chr8	10469292	rs62490857	C	T	2260.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:133,109:0.45:242
chr8	10469817	rs6996950	G	A	11530.77	.	AC=2;AF=1.00;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	1/1:0,431:1.00:431
chr8	10470068	rs74990397	C	T	6284.77	.	AC=1;AF=0.500;AN=2;DB;DP=533;set=Intersection	GT:AD:AF:DP	0/1:216,305:0.59:521
chr8	10470915	rs11773913	A	G	3566.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr8	10470941	rs4840503	C	T	2120.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr8	10480679	rs80059299	C	T	2740.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:48,129:0.73:177
chr8	10530037	rs11250057	G	A	1014.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr8	10530218	rs11250058	C	T	4875.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr8	10532355	rs4841419	T	C	3964.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:2,152:0.99:154
chr8	10532401	rs4840505	A	G	2547.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr8	10583203	rs10110624	A	G	2446.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:46,103:0.69:149
chr8	10584212	rs10100209	C	T	2780.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:86,123:0.59:209
chr8	10584288	rs10100333	C	T	892.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:29,36:0.55:65
chr8	10623138	rs1078543	T	A	5658.77	.	AC=1;AF=0.500;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	0/1:159,265:0.62:424
chr8	10623510	rs17773826	C	A	1001.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:14,29:0.67:43
chr8	10623534	rs71516594	C	A	830.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:10,21:0.68:31
chr8	10782415	rs35097633	T	C	505.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:26,22:0.46:48
chr8	10782442	rs4841459	A	C	670.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.185;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=1.775;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.13;ReadPosRankSum=-1.338;SOR=0.299;set=HC	GT:AD:AF:DP	0/1:12,17:0.59:29
chr8	10782445	rs36033512	T	G	670.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.853;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=1.744;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.36;ReadPosRankSum=-1.291;SOR=0.340;set=HC	GT:AD:AF:DP	0/1:12,18:0.60:30
chr8	10920326	rs6601555	C	T	3452.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:105,159:0.60:264
chr8	11058892	.	CGG	C,CG	927.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.676;ClippingRankSum=0.000;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=23.19;ReadPosRankSum=-1.060;SOR=2.891;set=HC	GT:AD:AF:DP	1/2:1,13,26:0.33,0.65:40
chr8	11105077	rs2572431	C	T	623.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr8	11105304	rs2572430	T	G	5810.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr8	11142389	rs3021505	C	CG	6237.73	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:3,202:0.99:205
chr8	11142625	rs2272594	T	C	3708.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr8	11152957	rs2245937	C	T	365.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr8	11155613	rs2409754	A	G	995.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr8	11157371	rs2736387	A	C	740.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr8	11162602	rs2256016	C	A	1686.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:1,57:0.98:58
chr8	11172396	rs2280802	T	C	1171.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.747;ClippingRankSum=0.000;DB;DP=198;ExcessHet=3.0103;FS=3.532;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.95;ReadPosRankSum=1.233;SOR=0.972;set=HC	GT:AD:AF:DP	0/1:132,65:0.33:197
chr8	11174484	rs11784572	G	C	868.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:91,47:0.34:138
chr8	11179074	rs3808503	A	C	759.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:68,40:0.37:108
chr8	11301753	rs3021513	A	C	4923.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr8	11400628	rs12386974	C	G	427.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:22,21:0.49:43
chr8	11400680	rs2245250	G	A	1530.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:42,69:0.62:111
chr8	11400944	rs2245232	G	T	1968.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:57,97:0.63:154
chr8	11403769	rs2244931	C	G	381.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:49,21:0.30:70
chr8	11405437	rs6994605	G	A	3757.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr8	11406593	rs3816668	T	C	5966.77	.	AC=1;AF=0.500;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	0/1:131,263:0.67:394
chr8	11411005	rs11250146	G	C	846.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:17,36:0.68:53
chr8	11414013	rs11250147	G	C	278.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:50,17:0.25:67
chr8	11414237	rs2306234	T	C	8784.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:0,323:1.00:323
chr8	11415572	rs4841557	A	G	1685.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:42,74:0.64:116
chr8	11415597	rs4841558	C	T	1023.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:31,44:0.59:75
chr8	11416122	rs2467518	T	C	1822.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr8	11416171	rs7011778	T	C	1791.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:39,77:0.66:116
chr8	11416428	rs6988443	C	T	3405.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:87,149:0.63:236
chr8	11416635	rs11785333	G	A	5035.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.543;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.56;ReadPosRankSum=-1.778;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:63,134:0.68:197
chr8	11416643	rs11785335	G	A	4715.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.426;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=0.619;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.10;ReadPosRankSum=-0.251;SOR=0.599;set=HC	GT:AD:AF:DP	0/1:58,116:0.67:174
chr8	11417257	rs11783065	A	G	2053.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:37,88:0.70:125
chr8	11417493	rs10098664	T	C	484.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.286;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.32;ReadPosRankSum=-0.443;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:30,22:0.42:52
chr8	11418385	rs2898289	G	A	2361.77	.	AC=1;AF=0.500;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	0/1:271,134:0.33:405
chr8	11418773	rs4841561	C	T	2733.77	.	AC=1;AF=0.500;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	0/1:233,137:0.37:370
chr8	11421321	rs13248757	T	C	662.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:60,33:0.35:93
chr8	11421358	rs10097005	C	A	1204.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:128,66:0.34:194
chr8	11421384	rs10097015	C	T	1520.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:173,85:0.33:258
chr8	11421793	rs1042689	C	T	1280.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:116,63:0.35:179
chr8	11422045	rs1042701	G	A	10736.77	.	AC=1;AF=0.500;AN=2;DB;DP=716;set=Intersection	GT:AD:AF:DP	0/1:237,471:0.67:708
chr8	11422130	rs7843987	T	C	9209.77	.	AC=1;AF=0.500;AN=2;DB;DP=690;set=Intersection	GT:AD:AF:DP	0/1:247,437:0.64:684
chr8	11422170	rs7840433	A	G	6150.77	.	AC=1;AF=0.500;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	0/1:173,274:0.61:447
chr8	11606312	rs3735819	T	C	325.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:28,15:0.35:43
chr8	11612698	rs804280	C	A	561.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:91,35:0.28:126
chr8	11614305	rs13250578	A	T	1075.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.145;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=1.992;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.39;ReadPosRankSum=-1.319;SOR=0.360;set=HC	GT:AD:AF:DP	0/1:19,27:0.59:46
chr8	11614313	rs3729852	A	G	1183.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.778;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.34;ReadPosRankSum=-1.433;SOR=0.564;set=HC	GT:AD:AF:DP	0/1:21,32:0.60:53
chr8	11614316	rs3729853	T	C	2090.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr8	11618998	rs804285	G	C	281.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr8	11619205	rs13281294	C	G	3783.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:88,158:0.64:246
chr8	11619261	rs2740431	T	A	10195.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	1/1:1,378:1.00:379
chr8	11619334	rs811966	C	T	6575.77	.	AC=1;AF=0.500;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	0/1:147,286:0.66:433
chr8	11619397	rs36018280	G	A	2378.77	.	AC=1;AF=0.500;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	0/1:296,136:0.31:432
chr8	11619635	rs2645455	T	A	2302.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:38,102:0.73:140
chr8	11629119	rs804269	T	C	2292.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.424;ClippingRankSum=0.000;DB;DP=241;ExcessHet=3.0103;FS=3.248;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.59;ReadPosRankSum=1.795;SOR=0.950;set=HC	GT:AD:AF:DP	0/1:170,69:0.29:239
chr8	11629129	rs804268	C	G	2342.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.937;ClippingRankSum=0.000;DB;DP=234;ExcessHet=3.0103;FS=1.112;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.10;ReadPosRankSum=0.652;SOR=0.809;set=HC	GT:AD:AF:DP	0/1:160,72:0.31:232
chr8	11629241	rs804267	G	A	443.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:39,25:0.39:64
chr8	11640784	rs8191642	A	G	3412.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:108,163:0.60:271
chr8	11643459	rs8191663	C	T	1806.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:65,82:0.56:147
chr8	11643803	rs1534862	C	T	2744.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:45,79:0.64:124
chr8	11643815	rs112384557	GC	G	2393.73	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:37,58:0.61:95
chr8	11643915	rs804292	G	A	329.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr8	11660051	rs2645429	A	G	1697.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.237;ClippingRankSum=0.000;DB;DP=339;ExcessHet=3.0103;FS=1.410;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.11;ReadPosRankSum=0.540;SOR=0.611;set=HC	GT:AD:AF:DP	0/1:230,102:0.31:332
chr8	11660764	rs2280922	G	C	1004.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:99,55:0.36:154
chr8	11660916	rs2252567	C	T	599.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:30,28:0.48:58
chr8	11665959	rs1032577	C	T	81.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:13,6:0.32:19
chr8	11666218	rs71711801	GTCCCAC	G	26930.73	.	AC=2;AF=1.00;AN=2;DB;DP=1200;set=Intersection	GT:AD:AF:DP	1/1:5,1007:1.00:1012
chr8	11666451	rs1616534	C	T	1821.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:168,89:0.35:257
chr8	11667179	rs8417	C	T	961.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:106,55:0.34:161
chr8	11683653	rs904011	T	C	5726.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr8	11687938	rs1293313	G	C	1223.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr8	11687959	rs2294137	C	T	360.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:18,17:0.49:35
chr8	11689119	rs9205	G	C	1046.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:168,66:0.28:234
chr8	11689228	rs2409836	T	G	283.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.842;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.69;ReadPosRankSum=-0.248;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:56,21:0.27:77
chr8	11695872	rs10903343	T	C	1452.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:123,73:0.37:196
chr8	11702594	rs709821	G	C	1244.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:25,52:0.68:77
chr8	11702840	rs1736081	T	G	1746.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:43,78:0.64:121
chr8	11703048	rs1692811	C	G	1836.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:45,76:0.63:121
chr8	11704457	rs1692816	A	C	1212.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr8	11704719	rs1692817	C	A	967.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:30,41:0.58:71
chr8	11705139	rs2294138	C	T	576.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:79,32:0.29:111
chr8	11705342	rs1736088	G	C	7363.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:1,262:1.00:263
chr8	11705380	rs149445749	A	AAGCCCCAGCTGGGCGAGGC	7597.73	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr8	11705442	rs2294139	G	T	468.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:54,25:0.32:79
chr8	11705448	rs1692819	G	A	1250.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:22,52:0.70:74
chr8	11705677	rs2294140	C	G	1921.77	.	AC=1;AF=0.500;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	0/1:254,110:0.30:364
chr8	11706581	rs13332	T	G	2574.77	.	AC=1;AF=0.500;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	0/1:210,135:0.39:345
chr8	11708355	rs2272766	G	A	786.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:66,38:0.37:104
chr8	11710301	rs1293291	A	G	751.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.128;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=0.779;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.83;ReadPosRankSum=-2.022;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:89,40:0.31:129
chr8	11710888	rs12338	G	C	2600.77	.	AC=1;AF=0.500;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	0/1:256,150:0.37:406
chr8	11711059	rs2272767	C	T	100.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:31,9:0.23:40
chr8	11831948	rs7461062	T	C	1178.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:98,60:0.38:158
chr8	11832039	rs139413395	C	T	3831.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:110,180:0.62:290
chr8	11832079	rs10108075	A	G	1811.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:164,95:0.37:259
chr8	11853596	rs11250186	A	G	1585.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:142,84:0.37:226
chr8	11872723	rs11784716	A	G	253.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr8	12516857	rs1808161	T	C	411.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr8	12517016	.	TCTCTGGCGCC	T	603	.	AC=1;AF=0.500;AN=2;BRF=0.41;FR=0.5000;HP=2;HapScore=1;MGOF=72;MMLQ=24;MQ=56.07;NF=1;NR=3;PP=603;QD=157.25;SC=CGCTCCTGGCTCTCTGGCGCC;SbPval=0.32;Source=Platypus;TC=8;TCF=4;TCR=4;TR=4;WE=12517033;WS=12517006;set=Platypus	GT:AD:AF:DP	1/0:4,4:0.50:8
chr8	12517038	.	T	G	79.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383;ClippingRankSum=-0.000;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.52;MQRankSum=-1.732;QD=8.86;ReadPosRankSum=-2.515;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:6,3:0.33:9
chr8	12517042	.	C	A	79.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383;ClippingRankSum=-0.000;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.52;MQRankSum=-1.732;QD=8.86;ReadPosRankSum=-2.260;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:6,3:0.33:9
chr8	12517049	.	G	C	79.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383;ClippingRankSum=-0.000;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.52;MQRankSum=-1.732;QD=8.86;ReadPosRankSum=-1.884;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:6,3:0.33:9
chr8	12580568	rs80200850	G	A	2102.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr8	12584628	.	C	CTT	364.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.137;ClippingRankSum=0.000;DP=31;ExcessHet=3.0103;FS=1.760;MLEAC=1;MLEAF=0.500;MQ=61.38;MQRankSum=1.474;QD=13.51;ReadPosRankSum=0.535;SOR=0.790;set=HC	GT:AD:AF:DP	0/1:7,20:0.74:27
chr8	12584659	rs10095845	C	T	1668.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr8	12589179	rs3802269	C	A	596.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr8	12592956	rs13251315	C	A	3634.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr8	12593045	rs13272425	A	G	1441.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr8	12598608	rs4831354	C	T	1146.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr8	12600622	rs7837242	C	T	1753.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr8	12809667	rs2272624	A	T	1848.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:161,99:0.38:260
chr8	12809700	rs2272623	G	A	1956.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:184,104:0.36:288
chr8	12870139	rs12156247	G	C	832.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:119,48:0.29:167
chr8	12878637	rs528255	A	G	8483.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr8	12878677	rs622106	T	C	7955.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr8	12878807	rs3739310	T	G	3638.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:113,161:0.59:274
chr8	12878830	rs3739309	C	T	4186.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:110,186:0.63:296
chr8	12878843	rs505480	C	A	2008.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:193,109:0.36:302
chr8	12879062	rs503550	T	C	12157.77	.	AC=2;AF=1.00;AN=2;DB;DP=453;set=Intersection	GT:AD:AF:DP	1/1:1,443:1.00:444
chr8	12879099	rs502882	G	A	12427.77	.	AC=2;AF=1.00;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	1/1:1,450:1.00:451
chr8	12879334	rs608909	T	C	12010.77	.	AC=2;AF=1.00;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	1/1:0,442:1.00:442
chr8	12879539	rs608052	A	G	5921.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr8	12879600	rs498852	C	T	2941.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr8	12888743	rs13281744	A	G	7035.77	.	AC=1;AF=0.500;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	0/1:156,315:0.67:471
chr8	12888908	rs7826836	T	G	4694.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:108,208:0.66:316
chr8	12888985	rs10108238	C	G	1034.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:144,57:0.28:201
chr8	12888997	rs573652	T	C	4835.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr8	12947705	rs57393239	TG	T	881.73	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:61,32:0.34:93
chr8	12948951	rs609020	A	G	830.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:124,49:0.28:173
chr8	12950088	rs34094992	CCT	C	685.73	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:21,19:0.47:40
chr8	12950315	rs568182	G	T	666.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:64,36:0.36:100
chr8	12952116	rs965672	A	G	662.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:13,30:0.70:43
chr8	12952174	rs5889417	CA	C	1912.73	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:10,106:0.91:116
chr8	12952230	rs658948	C	T	1232.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.213;ClippingRankSum=0.000;DB;DP=357;ExcessHet=3.0103;FS=0.458;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=0.054;QD=3.51;ReadPosRankSum=-0.132;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:267,84:0.24:351
chr8	12952293	rs658856	C	T	2041.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.893;ClippingRankSum=0.000;DB;DP=518;ExcessHet=3.0103;FS=1.254;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=-0.075;QD=3.98;ReadPosRankSum=-0.140;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:376,137:0.27:513
chr8	12958025	rs3739298	C	A	2439.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:66,100:0.60:166
chr8	12990422	rs10107321	A	G	4244.77	.	AC=1;AF=0.500;AN=2;DB;DP=635;set=Intersection	GT:AD:AF:DP	0/1:398,235:0.37:633
chr8	12990518	rs13275331	T	A	3239.77	.	AC=1;AF=0.500;AN=2;DB;DP=504;set=Intersection	GT:AD:AF:DP	0/1:323,175:0.35:498
chr8	13072177	rs3739300	C	T	2229.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:47,98:0.68:145
chr8	13133881	rs144792804	G	T	1868.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:208,101:0.33:309
chr8	13258936	rs289583	T	A	1280.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.69;SOR=3.407;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr8	13258936	.	TTACG	ATACA,ATACG	396	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.2;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=0;MMLQ=28;MQ=60.0;NF=18,26;NR=4,4;PP=396,73;QD=20.4303579483;SC=AGGTCAAGAGTTACGACTCCT;SbPval=0.34;Source=Platypus;TC=30;TCF=26;TCR=4;TR=22,30;WE=13258948;WS=13258926;set=Platypus	GT:AF:DP	0/1:0.73:30
chr8	13258940	rs201527331	G	A	610.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.917;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=5.196;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.51;ReadPosRankSum=-1.137;SOR=0.141;set=HC	GT:AD:AF:DP	0/1:8,25:0.76:33
chr8	13356424	rs3736135	G	T	1187.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr8	13356802	rs3816747	G	A	12694.77	.	AC=2;AF=1.00;AN=2;DB;DP=483;set=Intersection	GT:AD:AF:DP	1/1:0,476:1.00:476
chr8	13356818	rs11203494	TT	CG	21627.77	.	AC=2;AF=1.00;AN=2;DB;DP=491;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,485:1.00:485
chr8	13357587	rs1383942	G	A	3841.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr8	13424583	rs13273355	C	T	9367.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:0,341:1.00:341
chr8	13425353	rs11203497	T	A	9681.77	.	AC=2;AF=1.00;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	1/1:0,357:1.00:357
chr8	13959749	rs1973167	A	G	343.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr8	13965581	rs11336839	AT	A	2639.73	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr8	14022296	rs6993740	A	T	1639.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:39,69:0.64:108
chr8	14094993	rs35279380	A	AAAC	6857.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.044;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.23;MQRankSum=0.534;QD=39.19;ReadPosRankSum=1.700;SOR=1.001;set=HC	GT:AD:AF:DP	1/1:11,164:0.94:175
chr8	14095199	rs13269000	T	C	9483.77	.	AC=2;AF=1.00;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	1/1:0,367:1.00:367
chr8	14095250	rs1478030	A	T	4863.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr8	15095085	rs4831331	C	G	4330.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr8	15095296	rs11782187	A	G	1469.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr8	15095332	rs11782191	A	G	655.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr8	15508200	rs1035972	T	C	3172.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:90,141:0.61:231
chr8	15556360	rs5889594	A	AT	252.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.972;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=0.879;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=0.000;QD=2.48;ReadPosRankSum=-0.816;SOR=0.803;set=HC	GT:AD:AF:DP	0/1:73,29:0.28:102
chr8	15606182	rs7820648	G	A	2748.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:80,124:0.61:204
chr8	15615179	rs3834708	CCT	C	741.73	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:16,20:0.56:36
chr8	15978063	rs4338104	C	T	8017.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr8	16007649	rs36021654	GTATA	G	94.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.201;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=2.817;MLEAC=1;MLEAF=0.500;MQ=60.67;MQRankSum=0.812;QD=7.89;ReadPosRankSum=-0.709;SOR=0.136;set=HC	GT:AD:AF:DP	0/1:7,5:0.42:12
chr8	16859398	rs10448135	C	G	3759.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr8	16884721	.	A	ACC	187.75	.	AC=2;AF=1.00;AN=2;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.47;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr8	16935234	rs10098337	G	C	426.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:28,22:0.44:50
chr8	16942837	rs2285264	C	T	1324.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.804;ClippingRankSum=0.000;DB;DP=215;ExcessHet=3.0103;FS=0.532;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.31;ReadPosRankSum=-1.511;SOR=0.621;set=HC	GT:AD:AF:DP	0/1:136,74:0.35:210
chr8	16942849	rs2285265	C	T	1172.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.454;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.05;ReadPosRankSum=0.149;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:128,66:0.34:194
chr8	17042129	rs75130109	C	CCT	1830.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr8	17042416	rs2517086	G	C	192.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chr8	17063335	rs2904674	A	G	297.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:14,13:0.48:27
chr8	17068013	rs1548350	T	G	905.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:98,51:0.34:149
chr8	17074640	rs3213600	C	G	1180.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:50,55:0.52:105
chr8	17089788	rs77250415	C	T	380.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:12,16:0.57:28
chr8	17092164	rs2959606	G	T	13242.77	.	AC=2;AF=1.00;AN=2;DB;DP=494;set=Intersection	GT:AD:AF:DP	1/1:0,490:1.00:490
chr8	17100357	rs2904701	C	T	1192.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr8	17100456	rs150002154	G	GA	174.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.028;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=3.480;MLEAC=1;MLEAF=0.500;MQ=59.79;MQRankSum=0.000;QD=1.92;ReadPosRankSum=0.749;SOR=1.201;set=HC	GT:AD:AF:DP	0/1:68,23:0.25:91
chr8	17105771	rs2959614	T	C	41.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.216;ClippingRankSum=-0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.61;ReadPosRankSum=1.093;SOR=0.814;set=HC	GT:AD:AF:DP	0/1:9,7:0.44:16
chr8	17125957	rs73200948	G	C	344.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:13,16:0.55:29
chr8	17129449	rs73200951	C	G	786.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:16,33:0.67:49
chr8	17133727	rs3750251	C	G	235.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:4,10:0.71:14
chr8	17137687	rs3213601	G	A	402.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:60,25:0.29:85
chr8	17143830	rs3793427	G	C	1435.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:24,64:0.73:88
chr8	17157259	rs6992513	G	A	1082.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:17,43:0.72:60
chr8	17157677	rs3764796	T	G	3494.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:111,163:0.59:274
chr8	17159812	rs6587028	G	A	3828.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:118,175:0.60:293
chr8	17170645	rs4921749	T	A	1336.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:27,56:0.67:83
chr8	17170687	rs10113185	T	C	1887.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:46,85:0.65:131
chr8	17188895	rs7841726	T	G	783.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:79,41:0.34:120
chr8	17188911	rs3213603	A	G	1275.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:29,51:0.64:80
chr8	17198953	rs4921756	T	C	7301.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:1,267:1.00:268
chr8	17199033	rs4921757	G	A	2712.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:1,96:0.99:97
chr8	17206763	rs17587547	G	A	1372.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr8	17218629	rs1024355	G	A	7109.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr8	17230447	rs34169664	T	C	1830.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.29;SOR=3.952;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr8	17230447	.	TAGTCG	CAGTCG,CAGTCT	738	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.33;FR=0.5000,0.5000;HP=3;HapScore=1;MGOF=5;MMLQ=28;MQ=60.0;NF=45,12;NR=3,0;PP=738,138;QD=16.0994002614;SC=TTAAAATGAATAGTCGATCAA;SbPval=0.57;Source=Platypus;TC=48;TCF=45;TCR=3;TR=48,12;WE=17230460;WS=17230437;set=Platypus	GT:AF:DP	0/1:1.00:48
chr8	17230452	rs116939081	G	T	258.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.896;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=1.757;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.11;ReadPosRankSum=0.976;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:48,15:0.24:63
chr8	17230579	rs35105012	G	A	8506.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr8	17230644	rs7388581	G	C	8792.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	1/1:0,335:1.00:335
chr8	17270763	rs2073694	G	C	1827.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:237,111:0.32:348
chr8	17270787	rs67972978	A	G	10866.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	1/1:0,344:1.00:344
chr8	17270818	rs146438584	C	T	4132.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:100,194:0.66:294
chr8	17270837	rs72607374	G	C	1271.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:154,76:0.33:230
chr8	17396415	rs13259978	G	A	2821.77	.	AC=1;AF=0.500;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	0/1:314,163:0.34:477
chr8	17401364	rs368416506	CCTT	C	1614.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr8	17401878	rs2517252	G	A	5365.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr8	17406183	rs737039	A	G	5697.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr8	17406367	rs11373918	GT	G	2518.73	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:7,130:0.95:137
chr8	17419689	.	ATTTTTTTTTTTTTTTTTT	A	873.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.738;ClippingRankSum=0.000;DP=84;ExcessHet=3.0103;FS=15.661;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=0.663;QD=28.18;ReadPosRankSum=1.457;SOR=2.800;set=HC	GT:AD:AF:DP	0/1:8,23:0.74:31
chr8	17421279	rs2588173	T	C	10089.77	.	AC=2;AF=1.00;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	1/1:0,382:1.00:382
chr8	17486282	rs2229084	T	C	3933.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr8	17491467	rs35456129	G	A	515.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:9,21:0.70:30
chr8	17491730	rs7006613	T	C	875.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:15,35:0.70:50
chr8	17500223	rs4705	T	C	1213.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:178,74:0.29:252
chr8	17503431	rs1043883	G	C	185.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:19,11:0.37:30
chr8	17532573	rs2269698	T	C	371.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:25,17:0.40:42
chr8	17532619	rs2269699	C	T	677.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:71,37:0.34:108
chr8	17533568	rs2301541	A	T	378.73	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:30,18:0.38:48
chr8	17533633	rs2301542	A	G	865.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:79,50:0.39:129
chr8	17539206	rs2410495	C	T	2076.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.918;ClippingRankSum=0.000;DB;DP=465;ExcessHet=3.0103;FS=1.212;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.50;ReadPosRankSum=1.940;SOR=0.822;set=HC	GT:AD:AF:DP	0/1:324,137:0.30:461
chr8	17539303	rs2410496	A	C	818.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.253;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=0.738;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.69;ReadPosRankSum=-0.290;SOR=0.601;set=HC	GT:AD:AF:DP	0/1:100,44:0.31:144
chr8	17539315	rs2410497	A	G	577.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.726;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=4.518;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.77;ReadPosRankSum=-0.150;SOR=0.319;set=HC	GT:AD:AF:DP	0/1:86,35:0.29:121
chr8	17539329	rs2410498	T	C	517.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.618;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=5.954;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.75;ReadPosRankSum=-1.442;SOR=0.211;set=HC	GT:AD:AF:DP	0/1:62,28:0.31:90
chr8	17541784	rs2898459	C	T	790.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:23,33:0.59:56
chr8	17541999	rs2979792	T	C	628.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:108,42:0.28:150
chr8	17579135	rs6982255	C	T	2163.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr8	17611886	rs2979788	G	A	2473.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.361;ClippingRankSum=0.000;DB;DP=427;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.85;ReadPosRankSum=-0.320;SOR=0.626;set=HC	GT:AD:AF:DP	0/1:284,139:0.33:423
chr8	17612456	rs11203910	C	T	16853.77	.	AC=2;AF=1.00;AN=2;DB;DP=668;set=Intersection	GT:AD:AF:DP	1/1:48,617:0.93:665
chr8	17612518	rs61733696	A	G	9604.77	.	AC=1;AF=0.500;AN=2;DB;DP=686;set=Intersection	GT:AD:AF:DP	0/1:269,414:0.61:683
chr8	17612875	rs3739407	A	G	13589.77	.	AC=2;AF=1.00;AN=2;DB;DP=521;set=Intersection	GT:AD:AF:DP	1/1:0,516:1.00:516
chr8	17726019	rs10112643	A	G	8455.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	1/1:1,328:1.00:329
chr8	17732084	rs2517294	GC	CA	3533.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr8	17739342	rs11381673	C	CA	75.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.309;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.60;MQRankSum=1.077;QD=2.37;ReadPosRankSum=0.755;SOR=0.321;set=HC	GT:AD:AF:DP	0/1:19,13:0.41:32
chr8	17739538	rs3739406	T	C	7535.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:2,290:0.99:292
chr8	17742929	rs2073562	A	G	4650.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr8	17743020	rs484373	G	A	12201.77	.	AC=2;AF=1.00;AN=2;DB;DP=468;set=Intersection	GT:AD:AF:DP	1/1:0,462:1.00:462
chr8	17743256	rs369898	G	C	1224.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr8	17753657	rs500282	G	A	2168.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr8	17753873	rs3896063	C	T	2408.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr8	17796382	rs412750	AC	GT	16563.77	.	AC=2;AF=1.00;AN=2;DB;DP=375;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,369:1.00:369
chr8	17797409	rs2285303	A	G	1111.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr8	17804665	rs28655174	G	A	549.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr8	17814680	rs11777618	G	C	148.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.269;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=1.568;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.72;ReadPosRankSum=0.291;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:28,12:0.30:40
chr8	17814915	rs208753	A	G	5875.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr8	17818042	.	C	CTTTTTTTTTTT	811.73	.	AC=2;AF=1.00;AN=2;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.27;QD=40.59;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr8	17819572	rs3780103	C	T	14353.77	.	AC=2;AF=1.00;AN=2;DB;DP=539;set=Intersection	GT:AD:AF:DP	1/1:1,533:1.00:534
chr8	17819761	rs208060	A	G	2444.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr8	17827260	rs3214087	A	AC	6625.73	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr8	17829756	rs34990698	C	CAA	940.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr8	17851248	rs429633	C	A	553.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr8	17868029	rs2467556	C	A	1775.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr8	17868245	rs2467555	C	A	854.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr8	17871598	rs13266287	T	A	877.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr8	17871619	rs28551649	A	C	680.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.55;SOR=5.670;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr8	17885091	rs3213605	T	C	827.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr8	17891178	rs6586680	C	T	461.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr8	17916224	rs420610	A	C	838.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr8	17916553	rs7465164	C	T	7364.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr8	17916598	rs33985304	CT	C	2516.73	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr8	17918934	rs10103355	A	G	7229.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:2,269:0.99:271
chr8	17920807	rs7824644	A	G	4875.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr8	17920820	rs7824650	A	T	3489.73	.	AC=2;AF=1.00;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.48;SOR=1.360;set=HC	GT:AD:AF:DP	1/1:0,127:1.00:127
chr8	17921921	rs2073574	T	C	905.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:100,53:0.35:153
chr8	17924609	.	T	TGCACCTGTGCTGTATATCTAAGACATACA	421.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.834;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=2.556;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.71;ReadPosRankSum=1.137;SOR=1.445;set=HC	GT:AD:AF:DP	0/1:28,8:0.22:36
chr8	17928711	rs11785746	G	A	1154.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr8	17928753	rs113896339	G	GAAATA	4423.73	.	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.34;QD=48.61;SOR=1.770;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr8	18074322	rs17126350	A	G	1412.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:26,58:0.69:84
chr8	18074536	rs7387461	G	A	4387.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr8	18077007	rs10106882	G	C	3091.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr8	18257854	rs1801280	T	C	7892.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:1,277:1.00:278
chr8	18257994	rs1799929	C	T	5893.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:1,203:1.00:204
chr8	18393159	rs5889802	C	CT	175.90	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:4,12:0.75:16
chr8	18413875	rs2260920	A	G	3121.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr8	18414870	rs2717725	T	A	335.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr8	18415081	rs2634454	G	T	1880.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr8	18430201	rs2277137	T	A	1891.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:95,93:0.49:188
chr8	18432578	rs2248559	C	G	4454.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr8	18432924	rs1546002	C	T	951.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr8	18457957	rs2932001	A	G	1913.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.92;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr8	18632327	rs7822288	G	A	1845.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.95;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr8	18632333	rs7841096	A	T	1994.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.36;SOR=2.110;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr8	18656601	rs2248631	G	A	991.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr8	18658929	rs1386691	C	A	1770.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr8	18658950	rs11774165	T	G	1211.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr8	18659019	rs1386690	C	T	330.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr8	18659765	rs2638646	A	G	1830.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr8	18659928	rs2632847	A	G	1937.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr8	18660007	rs2638647	A	G	535.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr8	18661932	rs60951997	TAA	T	2251.73	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:4,77:0.95:81
chr8	18666210	rs2638653	G	A	4969.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr8	18729459	rs13273954	T	C	2523.77	.	AC=1;AF=0.500;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	0/1:257,129:0.33:386
chr8	18729496	rs13263453	G	A	2285.77	.	AC=1;AF=0.500;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	0/1:235,120:0.34:355
chr8	18729817	rs7016219	GT	AG	17380.77	.	AC=2;AF=1.00;AN=2;DB;DP=395;JOINED;set=Intersection	GT:AD:AF:DP	1/1:1,392:1.00:393
chr8	18793697	rs10092681	T	A	4179.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr8	18941575	rs9657494	G	A	240.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:19,11:0.37:30
chr8	19190491	rs1574288	A	G	3335.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:87,149:0.63:236
chr8	19190692	rs1574287	A	G	942.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.176;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.14;ReadPosRankSum=1.705;SOR=0.742;set=HC	GT:AD:AF:DP	0/1:16,39:0.71:55
chr8	19192192	rs17128221	T	C	1924.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:46,82:0.64:128
chr8	19192332	rs56005620	G	T	1583.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:56,71:0.56:127
chr8	19218666	rs140756695	T	TTTTTG	628.25	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:1,17:0.94:18
chr8	19218766	rs4921637	A	G	1953.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:37,88:0.70:125
chr8	19230955	rs143003649	G	GTA	209.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.766;ClippingRankSum=-0.000;DB;DP=22;ExcessHet=3.0103;FS=8.141;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.65;ReadPosRankSum=0.378;SOR=0.872;set=HC	GT:AD:AF:DP	0/1:9,9:0.50:18
chr8	19277735	rs7016592	A	G	160.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:20,9:0.31:29
chr8	19277817	rs6999786	G	A	520.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:67,32:0.32:99
chr8	19297583	rs13278459	A	G	774.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:48,33:0.41:81
chr8	19315034	rs10888163	G	T	220.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:19,12:0.39:31
chr8	19362768	rs7017776	C	T	2527.77	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:231,129:0.36:360
chr8	19456473	rs4244454	C	T	646.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:100,41:0.29:141
chr8	19677915	rs7822495	G	A	3286.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:103,145:0.58:248
chr8	19681647	rs2410612	G	A	348.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:16,16:0.50:32
chr8	19682545	rs3816246	A	G	1349.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:122,67:0.35:189
chr8	19682592	rs7018076	A	G	691.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:49,34:0.41:83
chr8	19687862	rs73206572	A	G	307.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:22,16:0.42:38
chr8	19689633	rs4434638	T	C	3649.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr8	19689821	rs4615593	G	A	285.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:22,15:0.41:37
chr8	19813676	rs270	C	A	338.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:20,16:0.44:36
chr8	20003431	rs35711001	AT	A	98.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.946;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=3.625;MLEAC=1;MLEAF=0.500;MQ=60.37;MQRankSum=2.031;QD=2.35;ReadPosRankSum=-1.834;SOR=1.659;set=HC	GT:AD:AF:DP	0/1:28,14:0.33:42
chr8	20005716	rs903997	G	C	437.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:14,18:0.56:32
chr8	20006070	rs4921692	T	C	2553.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:60,109:0.64:169
chr8	20007094	rs145993183	T	TCC	198.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.247;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=1.322;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.37;ReadPosRankSum=3.118;SOR=1.106;set=HC	GT:AD:AF:DP	0/1:44,15:0.25:59
chr8	20007096	rs142691807	T	C	60.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.101;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=1.492;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.92;ReadPosRankSum=1.557;SOR=0.397;set=HC	GT:AD:AF:DP	0/1:56,10:0.15:66
chr8	20007100	rs145489006	C	T	1253.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.162;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=1.266;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.94;ReadPosRankSum=3.931;SOR=1.096;set=HC	GT:AD:AF:DP	0/1:34,40:0.54:74
chr8	20022486	rs17092126	T	A	3819.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:117,175:0.60:292
chr8	20022694	rs3779670	G	A	778.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:64,38:0.37:102
chr8	20028464	rs11989477	G	A	189.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:14,9:0.39:23
chr8	20028695	rs17215745	A	G	2420.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:53,110:0.67:163
chr8	20028830	rs17222134	T	C	465.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:27,20:0.43:47
chr8	20035809	rs1532446	G	A	337.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:13,15:0.54:28
chr8	20036018	rs28491510	G	T,GAA	3710.73	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=36.74;SOR=0.924;set=HC	GT:AD:AF:DP	1/2:0,77,24:0.76,0.24:101
chr8	20036019	rs28633772	A	G	1978.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.279;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=0.855;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.79;ReadPosRankSum=-0.031;SOR=0.545;set=HC	GT:AD:AF:DP	0/1:27,73:0.73:100
chr8	20036043	rs1908809	C	A	696.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.660;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=2.051;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.20;ReadPosRankSum=-0.198;SOR=0.438;set=HC	GT:AD:AF:DP	0/1:62,23:0.27:85
chr8	20036095	rs2279708	G	A	207.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.138;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.07;ReadPosRankSum=0.234;SOR=0.532;set=HC	GT:AD:AF:DP	0/1:27,14:0.34:41
chr8	20036521	rs1390937	A	G	507.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:38,23:0.38:61
chr8	20036713	rs1390938	A	G	6688.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:2,245:0.99:247
chr8	20037017	rs2270638	T	C	68.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:18,6:0.25:24
chr8	20038466	rs2270641	T	G	1348.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:137,67:0.33:204
chr8	20068163	rs7460146	T	G	4169.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr8	20068619	rs9325865	A	G	759.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:84,39:0.32:123
chr8	20069789	rs10156354	G	C	4389.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:93,197:0.68:290
chr8	20072192	rs62498257	A	G	49.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.638;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.98;ReadPosRankSum=0.728;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:7,3:0.30:10
chr8	20077967	.	T	C	3220.77	.	AC=1;AF=0.500;AN=2;DP=218;set=Intersection	GT:AD:AF:DP	0/1:79,129:0.62:208
chr8	20107143	rs904003	A	G	1991.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr8	20110641	rs2645386	C	T	2457.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:206,129:0.39:335
chr8	21550768	rs15881	A	C	7883.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr8	21550800	rs1128397	A	T	11424.77	.	AC=2;AF=1.00;AN=2;DB;DP=435;MQ=60.02;set=Intersection	GT:AD:AF:DP	1/1:1,421:1.00:422
chr8	21562681	rs113957442	G	A	397.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:28,19:0.40:47
chr8	21767493	rs368685616	AT	A	340.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.627;ClippingRankSum=0.000;DB;DP=246;ExcessHet=3.0103;FS=0.907;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.394;QD=2.24;ReadPosRankSum=-0.886;SOR=0.898;set=HC	GT:AD:AF:DP	0/1:99,53:0.35:152
chr8	21771309	rs35282792	CT	C	193.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.388;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=0.617;QD=8.42;ReadPosRankSum=-1.334;SOR=2.712;set=HC	GT:AD:AF:DP	0/1:9,14:0.61:23
chr8	21824547	rs4872191	A	G	1498.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:32,60:0.65:92
chr8	21827880	rs370595398	AAC	A	124.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.432;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.76;ReadPosRankSum=-0.686;SOR=0.465;set=HC	GT:AD:AF:DP	0/1:58,13:0.18:71
chr8	21842023	rs1872220	TT	GA	2244.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr8	21845428	rs2306645	T	C	3689.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:79,170:0.68:249
chr8	21846586	rs2306646	G	C	6208.77	.	AC=1;AF=0.500;AN=2;DB;DP=472;set=Intersection	GT:AD:AF:DP	0/1:179,282:0.61:461
chr8	21848301	rs377272642	T	A	2825.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:53,124:0.70:177
chr8	21861663	rs10866837	G	C	556.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:9,22:0.71:31
chr8	21862430	rs10548676	TA	T	93.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.023;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=1.605;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.74;ReadPosRankSum=0.353;SOR=1.038;set=HC	GT:AD:AF:DP	0/1:36,18:0.33:54
chr8	21862551	rs1058486	A	G	3392.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:91,153:0.63:244
chr8	21890581	rs1947985	T	C	3451.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr8	21891939	rs10089142	G	A	2563.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr8	21891968	rs4871915	C	G	3172.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr8	21895146	rs11992609	A	G	4193.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr8	21904212	rs1078363	T	C	436.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:52,26:0.33:78
chr8	21905772	rs3176304	G	C	2163.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:70,103:0.60:173
chr8	21924297	rs9657287	C	T	243.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr8	21924441	.	C	T	243.77	.	AC=1;AF=0.500;AN=2;DP=50;set=Intersection	GT:AD:AF:DP	0/1:37,13:0.26:50
chr8	21924743	rs11135821	G	A	7634.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr8	21924778	rs11135822	T	G	4717.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr8	21924944	rs11135823	A	G	5834.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr8	21925214	rs6997244	C	G	3439.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr8	21927137	rs12680100	G	A	19872.77	.	AC=2;AF=1.00;AN=2;DB;DP=729;set=Intersection	GT:AD:AF:DP	1/1:0,711:1.00:711
chr8	21927211	rs12681799	C	G	9032.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr8	21927460	rs7386762	C	G	13791.77	.	AC=2;AF=1.00;AN=2;DB;DP=517;set=Intersection	GT:AD:AF:DP	1/1:0,505:1.00:505
chr8	21930007	rs3824334	G	A	2128.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr8	21930068	rs3824336	A	G	918.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr8	21931141	rs143269534	CAAAAA	C	2292.73	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=35.27;SOR=2.179;set=HC	GT:AD:AF:DP	1/1:1,64:0.98:65
chr8	21931170	rs199820139	AAAAAAAAAAGAG	A	6024.73	.	AC=2;AF=1.00;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=64.27;QD=42.73;SOR=1.187;set=HC	GT:AD:AF:DP	1/1:0,141:1.00:141
chr8	21937667	rs6557781	T	C	12802.77	.	AC=2;AF=1.00;AN=2;DB;DP=480;set=Intersection	GT:AD:AF:DP	1/1:0,475:1.00:475
chr8	21937870	rs7835670	G	A	12436.77	.	AC=2;AF=1.00;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	1/1:2,444:1.00:446
chr8	21939435	rs6557782	C	T	9381.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	1/1:2,375:0.99:377
chr8	21946664	rs7829160	C	T	149.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.40;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr8	21954973	rs12550032	G	T	647.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr8	21955552	rs1973254	T	C	3604.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr8	21957535	rs117565867	G	A	563.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:52,29:0.36:81
chr8	21958333	rs1552283	T	C	24640.77	.	AC=2;AF=1.00;AN=2;DB;DP=871;set=Intersection	GT:AD:AF:DP	1/1:0,863:1.00:863
chr8	21958831	rs1968870	C	G	1135.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr8	21958843	rs71544853	C	CTCTT	1896.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr8	21959191	rs6557810	A	G	9738.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	1/1:0,353:1.00:353
chr8	21959638	rs13267096	AC	GT	14585.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,325:1.00:325
chr8	21959877	rs7812435	T	G	5708.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr8	21964802	rs1552286	C	T	3203.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr8	21965113	rs3739435	T	C	10628.77	.	AC=2;AF=1.00;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	1/1:1,371:1.00:372
chr8	21966700	rs57316099	GC	G	5403.73	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr8	21966707	rs58343576	CG	C	5496.73	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr8	21982847	rs76294724	G	A	1331.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:130,73:0.36:203
chr8	22020294	rs2070684	C	A	5161.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr8	22021289	rs2070686	C	T	2502.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:93,115:0.55:208
chr8	22021388	rs2070687	C	G	2668.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:94,122:0.56:216
chr8	22021933	rs1126931	C	T	514.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:83,31:0.27:114
chr8	22035248	rs377158841	A	AG	17100.73	.	AC=2;AF=1.00;AN=2;DB;DP=580;set=Intersection	GT:AD:AF:DP	1/1:1,543:1.00:544
chr8	22053123	rs4075478	T	C	2579.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:65,124:0.66:189
chr8	22066855	rs4463424	C	T	1882.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr8	22079355	rs4872422	A	G	7613.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr8	22081708	rs4075536	G	A	4459.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr8	22084503	rs11547656	C	T	2041.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:153,109:0.42:262
chr8	22084653	rs4871975	C	T	534.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:21,25:0.54:46
chr8	22085260	rs10100426	T	C	5064.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:124,217:0.64:341
chr8	22104691	rs34392777	G	T	3299.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:80,148:0.65:228
chr8	22105502	rs1126677	T	C	2233.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:70,105:0.60:175
chr8	22147333	rs4872463	A	G	1815.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:36,75:0.68:111
chr8	22163331	rs12543697	C	T	552.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:16,23:0.59:39
chr8	22167286	rs4486204	A	G	957.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:10,36:0.78:46
chr8	22172702	rs4397403	C	T	800.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:16,31:0.66:47
chr8	22175836	rs112432255	AT	A	49.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.058;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=3.427;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.46;ReadPosRankSum=0.330;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:25,9:0.26:34
chr8	22211756	rs66554545	T	A	2131.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:44,91:0.67:135
chr8	22262098	rs896375	A	G	1296.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr8	22262321	rs896378	T	C	12371.77	.	AC=2;AF=1.00;AN=2;DB;DP=488;set=Intersection	GT:AD:AF:DP	1/1:4,473:0.99:477
chr8	22262418	rs2293144	A	G	9094.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,326:1.00:326
chr8	22266054	rs3817445	G	T	2118.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr8	22267385	rs3802199	A	G	947.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr8	22269454	rs75982150	T	G	295.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:18,16:0.47:34
chr8	22277040	rs10101909	G	A	3134.77	.	AC=1;AF=0.500;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	0/1:281,171:0.38:452
chr8	22388897	rs17060900	C	G	4361.77	.	AC=1;AF=0.500;AN=2;DB;DP=595;set=Intersection	GT:AD:AF:DP	0/1:361,228:0.39:589
chr8	22389900	rs2449340	T	G	2855.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr8	22396781	rs5890041	TC	T	124.87	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.97;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr8	22398414	rs7430	G	C	589.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr8	22398462	rs7431	G	A	166.84	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr8	22419191	rs2469764	T	C	3488.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr8	22421355	rs2449336	A	G	1170.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr8	22421395	rs2469762	G	A	2055.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr8	22424489	rs11779261	A	G	419.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:23,17:0.42:40
chr8	22426859	rs13258049	G	C	269.73	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:19,12:0.39:31
chr8	22428658	rs2449331	T	C	17868.77	.	AC=2;AF=1.00;AN=2;DB;DP=670;set=Intersection	GT:AD:AF:DP	1/1:0,666:1.00:666
chr8	22429178	rs2294045	T	G	4263.77	.	AC=1;AF=0.500;AN=2;DB;DP=679;set=Intersection	GT:AD:AF:DP	0/1:440,231:0.34:671
chr8	22429373	rs2280889	G	C	1307.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:121,68:0.36:189
chr8	22430651	rs57425551	C	CA	317.73	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:17,11:0.39:28
chr8	22442287	rs4872003	A	G	1534.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:156,87:0.36:243
chr8	22442661	rs2294047	A	G	3729.77	.	AC=1;AF=0.500;AN=2;DB;DP=497;set=Intersection	GT:AD:AF:DP	0/1:281,195:0.41:476
chr8	22449181	rs73229817	C	T	346.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:63,23:0.27:86
chr8	22458835	rs376781326	G	T	2350.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:70,109:0.61:179
chr8	22462346	rs11555543	T	G	393.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:31,21:0.40:52
chr8	22482851	rs900268	A	C	4317.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr8	22487388	rs6558170	C	G	929.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:13,36:0.73:49
chr8	22487422	rs6558171	T	C	1314.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:22,58:0.72:80
chr8	22491880	rs17088488	A	G	967.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:23,42:0.65:65
chr8	22491980	rs17746902	G	T	3452.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:111,153:0.58:264
chr8	22492052	rs6558172	G	A	4908.77	.	AC=1;AF=0.500;AN=2;DB;DP=369;MQ=60.23;set=Intersection	GT:AD:AF:DP	0/1:149,220:0.60:369
chr8	22492079	rs11383600	T	TA	7729.73	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:136,221:0.62:357
chr8	22492129	rs6558174	A	G	3483.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;MQ=60.04;set=Intersection	GT:AD:AF:DP	0/1:89,153:0.63:242
chr8	22492143	rs7838146	C	T	3021.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;MQ=60.05;set=Intersection	GT:AD:AF:DP	0/1:71,129:0.65:200
chr8	22526559	rs11550509	G	A	1416.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:200,90:0.31:290
chr8	22570844	rs3853	G	A	445.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:14,18:0.56:32
chr8	22570907	rs35121552	GT	G	1252.73	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:27,58:0.68:85
chr8	22570935	rs1047406	T	C	1951.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:42,86:0.67:128
chr8	22571018	rs1047398	A	G	2920.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:72,132:0.65:204
chr8	22571113	rs2280106	G	A	1298.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:34,57:0.63:91
chr8	22582274	rs1877673	C	T	466.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:8,19:0.70:27
chr8	22584718	rs1129474	T	C	3079.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:63,130:0.67:193
chr8	22785013	rs1553778	T	C	2314.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr8	22785361	rs2466224	C	A	1573.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr8	22853431	rs370771020	C	T	2316.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:87,111:0.56:198
chr8	22863004	rs2430811	A	G	8751.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr8	22863017	rs2466179	G	T	7879.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr8	22863191	rs2430812	C	T	1110.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr8	22864622	rs2466178	T	C	21603.77	.	AC=2;AF=1.00;AN=2;DB;DP=772;set=Intersection	GT:AD:AF:DP	1/1:0,765:1.00:765
chr8	22865320	rs2430815	T	G	4861.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr8	22880162	rs1047275	G	C	6484.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:1,234:1.00:235
chr8	22881852	rs6557609	T	C	12392.77	.	AC=2;AF=1.00;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	1/1:0,459:1.00:459
chr8	22885109	rs1105944	A	G	5211.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr8	22885154	rs1105945	G	A	11732.77	.	AC=2;AF=1.00;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	1/1:2,433:1.00:435
chr8	22885331	rs2293400	A	T	10880.77	.	AC=2;AF=1.00;AN=2;DB;DP=405;MQ=59.98;set=Intersection	GT:AD:AF:DP	1/1:0,396:1.00:396
chr8	22886020	rs13265018	A	G	7569.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr8	22886130	rs2293399	A	G	2680.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr8	22887013	rs6420148	C	G	2704.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr8	22888407	rs10866818	G	A	1603.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr8	22926313	rs1129424	G	A	6604.77	.	AC=1;AF=0.500;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	0/1:136,289:0.68:425
chr8	22926498	rs11135695	G	A	559.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:75,32:0.30:107
chr8	22960704	rs6557616	G	C	3109.77	.	AC=1;AF=0.500;AN=2;DB;DP=584;set=Intersection	GT:AD:AF:DP	0/1:396,186:0.32:582
chr8	22969091	rs10111172	T	C	516.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:59,27:0.31:86
chr8	22972228	rs61736402	C	T	2307.77	.	AC=1;AF=0.500;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	0/1:211,123:0.37:334
chr8	22974278	.	C	T	750	.	AC=1;AF=0.500;AN=2;BRF=0.46;FR=0.5000;HP=2;HapScore=1;MGOF=7;MMLQ=24;MQ=57.2;NF=25;NR=27;PP=750;QD=15.0917540874;SC=GAACACCAGCCCGGGGACTCC;SbPval=0.43;Source=Platypus;TC=133;TCF=60;TCR=73;TR=52;WE=22974286;WS=22974268;set=Platypus	GT:AD:AF:DP	0/1:81,52:0.39:133
chr8	22974325	.	G	A	432	.	AC=1;AF=0.500;AN=2;BRF=0.41;FR=0.5000;HP=3;HapScore=1;MGOF=12;MMLQ=28;MQ=48.42;NF=9;NR=20;PP=432;QD=16.0955590534;SC=ACACCAGCCCGGGGACTCCTG;SbPval=0.9;Source=Platypus;TC=86;TCF=38;TCR=48;TR=29;WE=22974333;WS=22974315;set=Platypus	GT:AD:AF:DP	1/0:57,29:0.34:86
chr8	22974450	.	T	C	1190	.	AC=1;AF=0.500;AN=2;BRF=0.42;FR=0.5000;HP=1;HapScore=2;MGOF=3;MMLQ=24;MQ=57.55;NF=39;NR=36;PP=1190;QD=16.330282834;SC=GAGACAATGATCACCAGCCCG;SbPval=0.61;Source=Platypus;TC=189;TCF=95;TCR=94;TR=75;WE=22974458;WS=22974440;set=Platypus	GT:AD:AF:DP	1/0:114,75:0.40:189
chr8	22989954	rs4872058	G	A	403.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:17,17:0.50:34
chr8	22990193	rs36229757	TTGTGTGTG	T,TTG	2152.73	.	AC=1,1;AF=0.500,0.500;AN=2;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.10;MQRankSum=0.277;QD=33.64;SOR=0.880;set=HC	GT:AD:AF:DP	1/2:2,42,20:0.66,0.31:64
chr8	22990234	.	GA	G	2976	.	AC=1;AF=0.500;AN=2;BRF=0.26;FR=0.5000;HP=8;HapScore=1;MGOF=82;MMLQ=26;MQ=60.09;NF=1;NR=39;PP=2976;QD=20;SC=TGTGTGTGCAGAAAAAAATGC;SbPval=0.59;Source=Platypus;TC=45;TCF=1;TCR=44;TR=40;WE=22990242;WS=22990224;set=Platypus	GT:AD:AF:DP	0/1:5,40:0.89:45
chr8	23001988	rs1133782	A	G	7627.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr8	23049136	rs34127830	T	TA	83.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.849;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=1.497;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.23;ReadPosRankSum=-0.640;SOR=0.955;set=HC	GT:AD:AF:DP	0/1:50,18:0.26:68
chr8	23049292	rs2230229	C	T	9840.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:0,364:1.00:364
chr8	23058188	rs4872077	T	C	8275.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr8	23069574	rs13274366	T	C	4197.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr8	23104195	rs2294123	G	T	1772.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr8	23106665	rs2280934	A	G	918.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr8	23113908	rs4439140	G	A	548.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:11,21:0.66:32
chr8	23114203	rs368357831	G	GTTT	551.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.426;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=2.884;MLEAC=1;MLEAF=0.500;MQ=59.71;MQRankSum=0.000;QD=17.24;ReadPosRankSum=2.063;SOR=2.476;set=HC	GT:AD:AF:DP	0/1:12,20:0.62:32
chr8	23115398	rs56164900	C	T	694.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:40,31:0.44:71
chr8	23116429	rs4478582	A	C	580.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.980;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.69;ReadPosRankSum=0.576;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:71,31:0.30:102
chr8	23116429	.	ACC	CCT	420	.	AC=1;AF=0.500;AN=2;FR=0.5000;HP=2;HapScore=1;MGOF=1;MMLQ=24;MQ=60.0;NF=14;NR=13;PP=420;QD=17.5358472171;SC=CTTTAACGAAACCTGACTTGT;SbPval=0.54;Source=Platypus;TCF=49;TR=27;WE=23116439;WS=23116419;set=Platypus	GT:AD:AF:DP	0/1:66,27:0.29:93
chr8	23116431	rs4872098	C	T	3361.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr8	23117643	rs2294125	T	C	2187.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:67,96:0.59:163
chr8	23118155	rs9828	T	C	6188.77	.	AC=1;AF=0.500;AN=2;DB;DP=417;MQ=59.98;set=Intersection	GT:AD:AF:DP	0/1:145,265:0.65:410
chr8	23145320	rs11777755	A	G	359.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:47,17:0.27:64
chr8	23147564	rs3808536	G	A	2667.77	.	AC=1;AF=0.500;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	0/1:257,141:0.35:398
chr8	23148003	rs4469460	G	A	162.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:25,9:0.26:34
chr8	23148930	rs2272762	A	G	1414.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.806;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=0.679;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.25;ReadPosRankSum=0.747;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:94,44:0.32:138
chr8	23148940	rs2272761	G	A	1429.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.048;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.00;ReadPosRankSum=1.149;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:86,44:0.34:130
chr8	23149089	rs2272759	A	G	200.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:14,10:0.42:24
chr8	23150671	rs11135720	A	G	231.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:17,10:0.37:27
chr8	23150772	rs72237352	CTGCT	C	2160.73	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:93,59:0.39:152
chr8	23150878	rs13530	T	G	931.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:143,59:0.29:202
chr8	23151000	rs3860836	A	G	383.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:28,18:0.39:46
chr8	23152334	rs15946	A	G	2200.77	.	AC=1;AF=0.500;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	0/1:250,126:0.34:376
chr8	23152410	rs137952235	CTG	C	63.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.427;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=2.139;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=3.984;QD=0.39;ReadPosRankSum=-0.187;SOR=0.981;set=HC	GT:AD:AF:DP	0/1:147,17:0.10:164
chr8	23153022	rs1002792	T	C	1206.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:135,68:0.33:203
chr8	23167300	rs11554932	G	A	1345.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:173,79:0.31:252
chr8	23167353	rs1063582	T	G	8987.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr8	23167560	rs12548642	T	C	1480.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:19,61:0.76:80
chr8	23174425	rs3824213	T	C	2970.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr8	23174481	rs7357444	G	A	3737.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:102,158:0.61:260
chr8	23174748	rs13250587	A	G	6048.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr8	23177619	rs13254579	C	A	8115.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:2,287:0.99:289
chr8	23186161	rs28457141	T	C	492.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:99,34:0.26:133
chr8	23186222	.	A	ATGTGTG	672.73	.	AC=2;AF=1.00;AN=2;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.02;QD=39.57;SOR=3.767;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr8	23198732	rs11781891	C	A	1090.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:86,56:0.39:142
chr8	23225559	rs1063577	G	A	2115.77	.	AC=1;AF=0.500;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	0/1:209,116:0.36:325
chr8	23225708	rs138503568	C	A	5075.77	.	AC=1;AF=0.500;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	0/1:124,222:0.64:346
chr8	23282556	.	G	GTA	3133.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.204;ClippingRankSum=0.000;DP=422;ExcessHet=3.0103;FS=10.993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.99;ReadPosRankSum=1.052;SOR=1.189;set=HC	GT:AD:AF:DP	0/1:295,97:0.25:392
chr8	23282559	.	C	CAGTATTCCATG	3297.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.884;ClippingRankSum=0.000;DP=397;ExcessHet=3.0103;FS=10.981;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.33;ReadPosRankSum=0.484;SOR=1.190;set=HC	GT:AD:AF:DP	0/1:299,97:0.24:396
chr8	23282562	.	A	AGTATT	2719.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.041;ClippingRankSum=0.000;DP=370;ExcessHet=3.0103;FS=7.580;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.37;ReadPosRankSum=-0.456;SOR=1.090;set=HC	GT:AD:AF:DP	0/1:284,85:0.23:369
chr8	23291835	rs1142283	T	C	847.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:111,51:0.31:162
chr8	23292044	rs139348326	GCA	G	88.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.625;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.73;ReadPosRankSum=-0.482;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:106,16:0.13:122
chr8	23294392	rs2272643	C	T	1113.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:139,62:0.31:201
chr8	23294412	rs2272642	A	G	1422.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:185,81:0.30:266
chr8	23307253	rs2293936	A	C	218.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.057;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=1.705;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.37;ReadPosRankSum=-0.121;SOR=0.936;set=HC	GT:AD:AF:DP	0/1:51,14:0.22:65
chr8	23423758	rs10992	G	A	2351.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.871;ClippingRankSum=0.000;DB;DP=543;ExcessHet=3.0103;FS=0.597;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.40;ReadPosRankSum=-2.230;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:392,142:0.27:534
chr8	23429448	rs59804560	A	ATT	224.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.247;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.99;ReadPosRankSum=-1.141;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:30,15:0.33:45
chr8	23431045	rs1810193	T	C	3475.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr8	23431192	rs10104250	G	T	5233.77	.	AC=1;AF=0.500;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	0/1:148,227:0.61:375
chr8	23431344	rs3736034	C	A	8991.77	.	AC=1;AF=0.500;AN=2;DB;DP=710;set=Intersection	GT:AD:AF:DP	0/1:279,427:0.60:706
chr8	23431407	rs3174040	A	G	7436.77	.	AC=1;AF=0.500;AN=2;DB;DP=550;set=Intersection	GT:AD:AF:DP	0/1:210,336:0.62:546
chr8	23432033	rs10108792	C	A	1222.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:26,49:0.65:75
chr8	23432213	rs10098411	T	C	7867.77	.	AC=1;AF=0.500;AN=2;DB;DP=524;set=Intersection	GT:AD:AF:DP	0/1:161,355:0.69:516
chr8	23432314	rs1801451	T	C	2202.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:37,93:0.72:130
chr8	23432326	rs1398232	T	A	3523.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.33;SOR=5.117;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr8	23432326	.	TTTGCAC	ATTGCAC,ATTGCAT	2962	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.38;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=13;MMLQ=28;MQ=60.0;NF=9,0;NR=92,26;PP=2962,1206;QD=20;SC=CAGTGTAACCTTTGCACGTAC;SbPval=0.83;Source=Platypus;TC=105;TCF=13;TCR=92;TR=101,26;WE=23432340;WS=23432304;set=Platypus	GT:AF:DP	0/1:0.96:105
chr8	23432332	rs8534	C	T	473.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.476;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.99;ReadPosRankSum=-1.662;SOR=0.945;set=HC	GT:AD:AF:DP	0/1:68,27:0.28:95
chr8	23540249	rs2228013	G	A	1068.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:135,66:0.33:201
chr8	23560648	rs35373423	G	A	566.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:7,22:0.76:29
chr8	23702587	rs1992053	C	T	423.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:72,25:0.26:97
chr8	23712066	rs5890129	G	GT	441.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.325;ClippingRankSum=0.000;DB;DP=573;ExcessHet=3.0103;FS=1.479;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.87;ReadPosRankSum=1.984;SOR=0.830;set=HC	GT:AD:AF:DP	0/1:410,99:0.19:509
chr8	24187399	rs11994377	T	A	1036.73	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:20,45:0.69:65
chr8	24193264	rs4872222	T	C	4054.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr8	24208649	rs10092862	C	T	970.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr8	24208847	rs7009516	G	A	1329.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:141,75:0.35:216
chr8	24208934	rs5012230	C	A	1943.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:55,86:0.61:141
chr8	24211278	rs7815643	C	T	4572.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr8	24211331	rs7814768	G	A	5137.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr8	24211884	rs10694022	A	ATGTC	3180.73	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr8	24211993	rs10610134	ACTAT	A	4287.73	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr8	24247556	rs4872231	A	G	505.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:21,25:0.54:46
chr8	24256470	rs2291577	C	T	4599.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:97,214:0.69:311
chr8	24257137	rs17799264	T	C	1351.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:16,48:0.75:64
chr8	24261526	rs3765124	A	G	5563.77	.	AC=1;AF=0.500;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	0/1:143,248:0.63:391
chr8	24333601	rs10100176	G	A	2181.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr8	24333848	rs60628806	A	AT	97.73	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr8	24339679	rs13255694	G	A	495.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:13,24:0.65:37
chr8	24339896	rs11348969	GA	G	1172.73	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr8	24348221	rs1492401	T	A	4589.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr8	24348241	rs2242354	A	G	3497.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:74,136:0.65:210
chr8	24350188	rs1352952	C	T	748.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:93,47:0.34:140
chr8	24356818	rs13259668	A	C	2595.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:57,118:0.67:175
chr8	24357917	rs4242407	G	T	215.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:8,9:0.53:17
chr8	24358219	rs17739399	A	G	2828.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:82,134:0.62:216
chr8	24359068	rs13277171	G	A	2447.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:48,111:0.70:159
chr8	24359125	rs3071035	ATT	A	865.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.392;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=2.599;MLEAC=1;MLEAF=0.500;MQ=60.56;MQRankSum=0.549;QD=20.13;ReadPosRankSum=0.067;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:11,32:0.74:43
chr8	24363792	rs6982442	G	A	1699.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr8	24365157	rs34338646	TCA	T	3515.73	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr8	24365181	rs11307556	AT	A	396.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.431;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.02;ReadPosRankSum=-0.172;SOR=1.839;set=HC	GT:AD:AF:DP	1/1:4,29:0.88:33
chr8	24366020	rs2290150	T	C	2924.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:81,129:0.61:210
chr8	24774683	rs196864	C	A	8409.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr8	24811064	rs11300136	AG	A	3128.73	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr8	25132735	rs4478580	T	A	1235.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr8	25156296	rs2956656	T	G	1750.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr8	25158026	rs2709639	G	A	6811.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr8	25158072	rs5890219	AT	A	7121.73	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:4,333:0.99:337
chr8	25159665	rs868335	T	C	1325.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr8	25159885	rs907157	G	A	3522.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:91,159:0.64:250
chr8	25160084	rs2709638	CA	TG	1065.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr8	25174495	rs2666169	C	T	4793.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:77,216:0.74:293
chr8	25174685	.	T	C	121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.869;ClippingRankSum=0.000;DP=99;ExcessHet=3.0103;FS=2.979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.26;ReadPosRankSum=0.687;SOR=0.315;set=HC	GT:AD:AF:DP	0/1:82,15:0.15:97
chr8	25174710	rs2709627	C	T	1164.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:22,47:0.68:69
chr8	25174723	rs2666168	T	C	914.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:13,34:0.72:47
chr8	25177255	rs140926679	G	GT	937.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.744;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.79;MQRankSum=1.393;QD=24.68;ReadPosRankSum=-0.848;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:14,24:0.63:38
chr8	25177259	.	A	C	946.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.243;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.57;MQRankSum=1.134;QD=24.91;ReadPosRankSum=-0.773;SOR=0.960;set=HC	GT:AD:AF:DP	0/1:14,24:0.63:38
chr8	25177267	rs11781553	A	G	856.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.179;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=2.093;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.48;ReadPosRankSum=-0.582;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:13,22:0.63:35
chr8	25181356	rs2666174	C	T	2193.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr8	25182969	rs2666172	C	T	2770.73	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:92,128:0.58:220
chr8	25200148	rs10110351	A	G	1393.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr8	25202915	rs2468901	A	G	2478.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr8	25203022	rs2468902	A	G	7463.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr8	25209144	rs7012335	A	G	1006.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:100,50:0.33:150
chr8	25216620	rs17053446	A	T	5700.77	.	AC=1;AF=0.500;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	0/1:130,256:0.66:386
chr8	25222165	rs2271111	A	G	3719.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:113,177:0.61:290
chr8	25224513	rs77675545	GG	TT	4444.77	.	AC=1;AF=0.500;AN=2;DB;DP=415;JOINED;set=Intersection	GT:AD:AF:DP	0/1:276,128:0.32:404
chr8	25227229	rs2048083	T	G	1665.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.64;SOR=2.948;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr8	25227234	rs2048082	A	G	1665.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=48.99;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr8	25227255	rs2659578	C	T	644.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr8	25230168	rs2271108	C	T	4589.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr8	25230267	rs2271106	T	C	2885.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr8	25231044	rs12676152	T	G	900.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr8	25231117	rs3215159	C	CT	2630.73	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:5,115:0.96:120
chr8	25231385	rs2271105	T	C	5266.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr8	25234858	rs2659585	A	G	6537.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr8	25235055	rs34962551	T	C	559.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:82,36:0.31:118
chr8	25237801	rs11989035	T	C	1553.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:157,85:0.35:242
chr8	25237963	rs17053525	A	G	1209.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:113,61:0.35:174
chr8	25246481	rs2709602	G	A	527.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr8	25247821	rs113940021	TA	T	1297.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.442;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=1.475;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.775;QD=8.59;ReadPosRankSum=-0.722;SOR=0.868;set=HC	GT:AD:AF:DP	0/1:46,105:0.70:151
chr8	25249545	rs6991928	C	T	1065.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:33,44:0.57:77
chr8	25250423	rs6557840	A	G	5397.77	.	AC=1;AF=0.500;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	0/1:120,232:0.66:352
chr8	25257531	rs3763520	A	G	1283.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:119,67:0.36:186
chr8	25258442	rs3750194	C	T	3078.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:53,128:0.71:181
chr8	25261281	rs17053612	C	T	2328.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:77,106:0.58:183
chr8	25267622	rs2709618	A	G	4554.77	.	AC=1;AF=0.500;AN=2;DB;DP=732;set=Intersection	GT:AD:AF:DP	0/1:463,259:0.36:722
chr8	25268511	rs3030791	G	A	338.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:3,9:0.75:12
chr8	25280666	rs2709608	A	C	3805.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr8	25287397	rs1812594	T	C	714.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:9,28:0.76:37
chr8	25287556	rs965130	A	G	706.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:83,42:0.34:125
chr8	25293858	rs2012592	C	T	660.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:19,30:0.61:49
chr8	25296930	rs2271112	C	T	1511.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:41,70:0.63:111
chr8	25301759	.	C	CTTT	488.76	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.988;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=5.746;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.22;ReadPosRankSum=0.901;SOR=0.078;set=HC	GT:AD:AF:DP	0/1:5,17:0.77:22
chr8	25317614	rs11786622	T	G	704.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:21,25:0.54:46
chr8	25317691	rs6987936	A	T	5915.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr8	25317824	rs1506863	A	T	7731.77	.	AC=1;AF=0.500;AN=2;DB;DP=615;set=Intersection	GT:AD:AF:DP	0/1:249,351:0.58:600
chr8	25323777	rs10108752	T	C	5351.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr8	25325730	rs11996213	T	C	1582.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:44,88:0.67:132
chr8	25340833	rs66537174	G	A	140.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:12,8:0.40:20
chr8	25364331	rs4872318	G	A	1965.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.466;ClippingRankSum=0.000;DB;DP=386;ExcessHet=3.0103;FS=1.821;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.16;ReadPosRankSum=0.746;SOR=0.625;set=HC	GT:AD:AF:DP	0/1:264,117:0.31:381
chr8	25364834	rs3829009	A	T	4972.77	.	AC=1;AF=0.500;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:93,220:0.70:313
chr8	25364960	rs6990278	A	G	5834.77	.	AC=1;AF=0.500;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	0/1:150,271:0.64:421
chr8	25365278	rs8537	G	A	345.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:40,20:0.33:60
chr8	25744257	rs6557865	G	A	8761.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:0,328:1.00:328
chr8	25766097	rs34200265	A	AT	4421.73	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr8	25890478	rs1872497	G	C	3433.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr8	25902513	rs11449842	G	GA	173.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.568;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=6.749;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=2.826;QD=0.99;ReadPosRankSum=-0.021;SOR=1.347;set=HC	GT:AD:AF:DP	0/1:143,33:0.19:176
chr8	26240646	rs1055479	A	G	7008.77	.	AC=1;AF=0.500;AN=2;DB;DP=528;set=Intersection	GT:AD:AF:DP	0/1:195,327:0.63:522
chr8	26249018	rs2304300	G	A	1323.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:26,57:0.69:83
chr8	26363027	rs2197181	C	T	469.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:55,24:0.30:79
chr8	26481771	rs327222	T	C	4753.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr8	26483998	rs71553811	AACACACACACACAC	A,AACACACACACAC	1496.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.477;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.44;MQRankSum=0.469;QD=25.81;ReadPosRankSum=0.250;SOR=1.287;set=HC	GT:AD:AF:DP	1/2:2,43,13:0.74,0.22:58
chr8	26484064	rs4872457	T	G	855.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.793;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=2.885;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=-0.664;QD=4.63;ReadPosRankSum=0.406;SOR=0.498;set=HC	GT:AD:AF:DP	0/1:127,58:0.31:185
chr8	26484613	rs17322275	G	C	712.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:18,31:0.63:49
chr8	26505451	rs11776801	G	T	1605.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:40,61:0.60:101
chr8	26510792	rs708621	T	C	7346.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr8	26513313	rs71216769	G	GT	270.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.456;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.32;ReadPosRankSum=1.505;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:15,22:0.59:37
chr8	26716472	rs536401	A	G	2978.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr8	26943929	rs1814489	T	C	1356.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr8	26944600	rs2028908	A	G	4068.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr8	27094548	rs10217008	A	G	2992.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr8	27094615	rs79091127	G	T	332.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:28,18:0.39:46
chr8	27096634	rs1542185	C	T	2345.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:59,106:0.64:165
chr8	27099879	rs3739212	C	T	3991.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr8	27101204	rs4733040	T	A	9408.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.05;QD=45.67;SOR=1.103;set=HC	GT:AD:AF:DP	1/1:0,206:1.00:206
chr8	27101204	.	TTA	ATC	2947	.	AC=2;AF=1.00;AN=2;BRF=0.44;FR=1.0000;HP=4;HapScore=1;MGOF=1;MMLQ=24;MQ=60.05;NF=80;NR=47;PP=2947;QD=20;SC=CCTACGCCCCTTAACACATGG;SbPval=0.58;Source=Platypus;TC=133;TCF=82;TCR=51;TR=127;WE=27101214;WS=27101194;set=Platypus	GT:AD:AF:DP	1/1:6,127:0.95:133
chr8	27101206	rs7830662	A	C	9408.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.05;QD=44.38;SOR=1.115;set=HC	GT:AD:AF:DP	1/1:0,212:1.00:212
chr8	27147716	rs12386801	A	C	1473.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:40,69:0.63:109
chr8	27204663	rs2874826	A	G	2627.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:2,92:0.98:94
chr8	27204857	rs4629818	A	G	2780.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr8	27205046	rs57735330	AG	A	5582.73	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr8	27255080	rs1128433	A	G	396.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:5,16:0.76:21
chr8	27255128	rs1045510	T	C	872.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:16,35:0.69:51
chr8	27255146	rs1045511	G	A	1027.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:26,47:0.64:73
chr8	27255263	rs1045512	A	G	2168.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:68,98:0.59:166
chr8	27255325	rs2241650	C	T	1360.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:43,62:0.59:105
chr8	27255368	rs11267627	AGCAGCTCTCCTGCAGCCTC	A	1101.73	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:22,29:0.57:51
chr8	27277537	rs1030526	G	A	1295.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.908;ClippingRankSum=0.000;DB;DP=245;ExcessHet=3.0103;FS=3.088;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.38;ReadPosRankSum=-2.503;SOR=0.497;set=HC	GT:AD:AF:DP	0/1:162,79:0.33:241
chr8	27279705	rs2241652	G	A	3801.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.80;SOR=1.539;set=HC	GT:AD:AF:DP	1/1:0,132:1.00:132
chr8	27288033	rs7827965	T	C	731.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:55,33:0.38:88
chr8	27288314	rs56373327	T	C	1810.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:52,71:0.58:123
chr8	27289612	rs11988406	C	T	299.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:42,16:0.28:58
chr8	27289935	rs2303881	T	C	408.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:53,21:0.28:74
chr8	27289963	rs2303882	T	C	183.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:36,13:0.27:49
chr8	27291557	rs919493	T	C	4658.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr8	27291749	rs12056620	C	T	154.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.840;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=3.020;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.54;ReadPosRankSum=0.142;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:48,13:0.21:61
chr8	27292287	rs1896959	A	G	3566.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.97;SOR=1.728;set=HC	GT:AD:AF:DP	1/1:0,102:1.00:102
chr8	27292287	.	AGTGGA	GGTGGA,GGTGGG	921	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.41;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=7;MMLQ=28;MQ=60.0;NF=24,8;NR=59,22;PP=921,393;QD=11.5153158138;SC=GGGAGGCCAAAGTGGATGGAT;SbPval=0.52;Source=Platypus;TC=83;TCF=24;TCR=59;TR=83,30;WE=27292300;WS=27292277;set=Platypus	GT:AF:DP	0/1:1.00:83
chr8	27292292	rs1896960	A	G	727.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.221;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.904;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.91;ReadPosRankSum=-1.035;SOR=0.854;set=HC	GT:AD:AF:DP	0/1:56,36:0.39:92
chr8	27293865	rs7005936	C	T	491.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:68,31:0.31:99
chr8	27293989	rs2241654	G	A	230.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:16,13:0.45:29
chr8	27294532	rs2163176	C	G	4202.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr8	27294606	rs7005954	G	C	2005.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:167,98:0.37:265
chr8	27294823	rs6996922	T	C	8998.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr8	27295109	rs2288617	A	G	2169.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr8	27297696	rs2241657	T	C	2586.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr8	27303126	rs4733064	A	G	763.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr8	27308538	rs751018	G	A	1370.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:162,78:0.33:240
chr8	27308585	rs751019	A	C	3666.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:84,170:0.67:254
chr8	27310546	rs3735758	A	G	1011.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr8	27311703	rs1879184	T	C	6681.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr8	27312040	rs10093964	C	T	455.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.972;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=1.727;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.43;ReadPosRankSum=1.238;SOR=0.885;set=HC	GT:AD:AF:DP	0/1:104,29:0.22:133
chr8	27312135	rs7007145	G	A	1076.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.494;ClippingRankSum=0.000;DB;DP=264;ExcessHet=3.0103;FS=3.960;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.16;ReadPosRankSum=0.599;SOR=0.917;set=HC	GT:AD:AF:DP	0/1:189,70:0.27:259
chr8	27315726	rs1879183	T	C	1697.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr8	27315876	rs1879182	A	G	3876.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr8	27315900	rs1879181	A	G	3545.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr8	27321597	rs3735757	G	C	1472.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr8	27328354	rs2472554	G	C	1384.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr8	27348964	rs17057245	C	G	286.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:8,12:0.60:20
chr8	27358505	rs41507953	A	G	3336.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:62,141:0.69:203
chr8	27361311	rs17057262	C	T	312.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:6,13:0.68:19
chr8	27369334	rs7816586	A	G	7111.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr8	27373923	rs4149243	T	C	1296.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:47,63:0.57:110
chr8	27394366	rs13439459	C	T	1154.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.081;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=2.157;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.40;ReadPosRankSum=-0.343;SOR=0.557;set=HC	GT:AD:AF:DP	0/1:21,54:0.72:75
chr8	27396111	rs4149252	G	T	1820.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:64,80:0.56:144
chr8	27401964	rs1126452	A	C	2179.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:77,97:0.56:174
chr8	27402074	rs1042032	A	G	609.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:33,28:0.46:61
chr8	27402132	rs1042064	T	C	411.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:12,19:0.61:31
chr8	27436236	rs140683899	GTTTGT	G,GTTTGTTTTGTTTTGT	1570.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.694;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.13;MQRankSum=0.312;QD=37.40;ReadPosRankSum=0.296;SOR=0.846;set=HC	GT:AD:AF:DP	1/2:1,18,23:0.43,0.55:42
chr8	27456253	rs2279590	T	C	1201.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr8	27462008	rs28541694	C	G	2214.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr8	27462481	rs7982	A	G	5405.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr8	27467821	rs2070926	C	G	2591.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr8	27593650	rs10081527	T	C	364.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr8	27598042	rs34636629	GA	G	1598.73	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:65,87:0.57:152
chr8	27598172	rs7842672	A	G	1062.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr8	27606155	rs17477488	G	A	2098.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:68,97:0.59:165
chr8	27609830	rs4732744	A	G	2512.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr8	27614138	rs2280884	A	G	194.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:18,12:0.40:30
chr8	27630152	rs7842666	G	A	331.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:50,22:0.31:72
chr8	27641609	rs1824449	G	A	4211.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr8	27641706	rs145374594	TATTG	T	639.73	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:26,18:0.41:44
chr8	27645704	rs6558014	C	T	1050.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:73,45:0.38:118
chr8	27649426	rs11402833	G	GT	609.73	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:76,41:0.35:117
chr8	27661066	rs144484866	T	TAC	343.73	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:30,15:0.33:45
chr8	27729532	rs61737291	G	A	6279.77	.	AC=1;AF=0.500;AN=2;DB;DP=448;set=Intersection	GT:AD:AF:DP	0/1:161,284:0.64:445
chr8	27729713	rs11776426	G	A	530.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:90,35:0.28:125
chr8	27737198	rs4732610	A	G	9701.77	.	AC=1;AF=0.500;AN=2;DB;DP=663;set=Intersection	GT:AD:AF:DP	0/1:230,424:0.65:654
chr8	27743401	rs2726928	T	G	554.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:38,26:0.41:64
chr8	27743535	rs2685381	T	C	6124.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr8	27762235	rs2726984	T	C	1155.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:92,59:0.39:151
chr8	27762537	rs939706	A	G	1706.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr8	27779296	rs61737296	G	A	1626.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:145,89:0.38:234
chr8	27779545	rs10103504	C	T	5876.77	.	AC=1;AF=0.500;AN=2;DB;DP=473;set=Intersection	GT:AD:AF:DP	0/1:187,274:0.59:461
chr8	27779811	rs4732613	C	T	3390.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:95,143:0.60:238
chr8	27779880	rs61455593	T	TA	1467.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.724;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=2.317;MLEAC=1;MLEAF=0.500;MQ=65.19;MQRankSum=5.904;QD=26.21;ReadPosRankSum=1.773;SOR=1.747;set=HC	GT:AD:AF:DP	0/1:18,38:0.68:56
chr8	27779885	rs59195507	T	G	1476.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.885;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=2.265;MLEAC=1;MLEAF=0.500;MQ=66.11;MQRankSum=6.219;QD=27.35;ReadPosRankSum=1.618;SOR=1.656;set=HC	GT:AD:AF:DP	0/1:18,36:0.67:54
chr8	27779885	.	TC	AC	1956	.	AC=1;AF=0.500;AN=2;BRF=0.22;FR=0.5000,0.5000;HP=4;HapScore=1;MGOF=19;MMLQ=28;MQ=66.35;NF=2,0;NR=30,29;PP=1956,1955;QD=62.2116003921;SC=ACGAATAAAATCACAGGTGGT;SbPval=0.71;Source=Platypus;TC=51;TCF=4;TCR=47;TR=32,29;WE=27779893;WS=27779875;set=Platypus	GT:AD:AF:DP	0/1:19,32:0.63:51
chr8	27779885	.	TC	TGC	1956	.	AC=1;AF=0.500;AN=2;BRF=0.22;FR=0.5000,0.5000;HP=4;HapScore=1;MGOF=19;MMLQ=28;MQ=66.35;NF=2,0;NR=30,29;PP=1956,1955;QD=62.2116003921;SC=ACGAATAAAATCACAGGTGGT;SbPval=0.71;Source=Platypus;TC=51;TCF=4;TCR=47;TR=32,29;WE=27779893;WS=27779875;set=Platypus	GT:AD:AF:DP	0/1:18,29:0.62:47
chr8	27823868	rs2726940	G	A	372.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:26,19:0.42:45
chr8	27886700	rs9644134	A	G	458.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:55,21:0.28:76
chr8	27886749	rs375483912	G	A	922.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:104,52:0.33:156
chr8	27886903	rs9314357	C	T	1194.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.503;ClippingRankSum=0.000;DB;DP=271;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.54;ReadPosRankSum=0.259;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:192,71:0.27:263
chr8	27887047	rs11786995	G	C	716.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:32,33:0.51:65
chr8	27887813	rs7817068	T	C	766.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:87,43:0.33:130
chr8	27898452	rs12675621	A	G	830.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:18,38:0.68:56
chr8	27903069	rs13279787	C	T	511.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:20,25:0.56:45
chr8	27915830	rs4336563	T	C	7303.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr8	27918057	rs7817227	T	C	7792.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr8	27925204	rs4732620	T	C	2342.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:177,116:0.40:293
chr8	27927849	rs6998705	C	G	2986.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr8	27957529	rs2290370	C	T	2455.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:72,108:0.60:180
chr8	27957556	rs2290369	G	A	1783.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:45,76:0.63:121
chr8	27964056	rs61714722	CAAAAAAAAAAAAAAA	C	764.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.210;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=2.702;MLEAC=1;MLEAF=0.500;MQ=56.15;MQRankSum=0.759;QD=31.86;ReadPosRankSum=0.865;SOR=1.219;set=HC	GT:AD:AF:DP	0/1:3,21:0.88:24
chr8	27967856	rs3213997	A	G	4351.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:109,196:0.64:305
chr8	28013579	rs4732832	A	C	5345.77	.	AC=1;AF=0.500;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	0/1:127,241:0.65:368
chr8	28016002	rs149274779	AAATAAAG	A	1227.73	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:18,35:0.66:53
chr8	28206275	rs1046511	G	C	8723.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:0,334:1.00:334
chr8	28210613	rs6558057	G	C	1618.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr8	28210774	.	A	T	959.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.266;ClippingRankSum=0.000;DP=157;ExcessHet=3.0103;FS=9.260;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.36;ReadPosRankSum=1.315;SOR=1.629;set=HC	GT:AD:AF:DP	0/1:105,46:0.30:151
chr8	28286174	rs1055741	T	G	2538.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:58,114:0.66:172
chr8	28304769	rs1390963	C	T	2096.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:53,96:0.64:149
chr8	28341058	rs7843764	A	G	2437.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:1,87:0.99:88
chr8	28341110	rs11787273	C	T	724.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:9,29:0.76:38
chr8	28362792	rs7833751	T	G	948.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:100,51:0.34:151
chr8	28384712	rs2241802	A	G	1853.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:168,94:0.36:262
chr8	28633098	rs241203	A	C	1094.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr8	28633124	rs7462400	T	C	1707.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr8	28638223	rs241196	C	T	545.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr8	28645271	rs241187	C	T	5859.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr8	28651298	rs2665911	A	C	1417.31	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.162;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=14.32;ReadPosRankSum=0.772;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:13,86:0.87:99
chr8	28651300	rs2665912	A	C	1417.31	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.579;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=14.03;ReadPosRankSum=0.583;SOR=0.741;set=HC	GT:AD:AF:DP	1/1:13,88:0.87:101
chr8	28692783	rs28522383	C	T	4515.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr8	28707570	rs4732887	C	T	489.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:14,22:0.61:36
chr8	28707622	.	GA	G	308.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.263;ClippingRankSum=0.000;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.462;QD=2.76;ReadPosRankSum=1.156;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:73,39:0.35:112
chr8	28876221	rs7837237	T	C	1056.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.174;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.97;ReadPosRankSum=0.657;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:118,59:0.33:177
chr8	28900087	rs1948132	T	C	959.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:93,49:0.35:142
chr8	28905081	rs33978272	CT	C	104.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.389;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.36;ReadPosRankSum=0.683;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:10,14:0.58:24
chr8	28967679	rs3736225	C	T	2017.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:36,86:0.70:122
chr8	28970865	rs1466627	C	G	125.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:3,5:0.62:8
chr8	28979949	rs4732905	C	A	2755.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:1,100:0.99:101
chr8	28980026	rs17527001	C	T	1653.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:173,93:0.35:266
chr8	28984042	rs3793435	T	C	3677.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr8	28984572	rs3763566	G	A	774.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr8	28991405	rs3750265	A	G	766.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr8	29005093	rs6986672	A	G	7689.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr8	29005128	rs13263819	A	G	5556.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr8	29023421	.	T	TTCGATTGTAGATCGAAGTACC	2140.73	.	AC=2;AF=1.00;AN=2;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr8	29033422	rs6558098	C	T	1517.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr8	29053761	.	TAA	T,TA	2952.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.729;ClippingRankSum=0.000;DP=319;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.54;MQRankSum=1.531;QD=11.72;ReadPosRankSum=-1.573;SOR=0.695;set=HC	GT:AD:AF:DP	1/2:39,63,150:0.25,0.60:252
chr8	29053842	rs117774350	T	C	1178.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:27,43:0.61:70
chr8	29062287	rs370585455	CA	C	65.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.645;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=0.815;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.951;QD=0.48;ReadPosRankSum=1.847;SOR=0.597;set=HC	GT:AD:AF:DP	0/1:111,26:0.19:137
chr8	29107388	rs2954794	G	A	2502.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr8	29197672	rs583034	A	G	1263.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:33,61:0.65:94
chr8	29203137	rs3215218	CT	C	624.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:17,22:0.56:39
chr8	29207845	rs3182143	C	T	3149.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:70,143:0.67:213
chr8	29207872	rs2637819	G	A	2163.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:50,92:0.65:142
chr8	29923732	rs2271367	G	A	2220.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr8	29927300	rs6468093	C	G	5883.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr8	29927321	rs6468094	A	G	5711.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr8	29931375	rs986636	T	C	5128.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr8	29935655	rs71204258	C	CAA	446.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.362;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.87;ReadPosRankSum=-0.472;SOR=3.258;set=HC	GT:AD:AF:DP	0/1:5,20:0.80:25
chr8	29935696	rs71204259	GA	G	1200.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.243;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=4.291;MLEAC=1;MLEAF=0.500;MQ=60.42;MQRankSum=0.867;QD=12.01;ReadPosRankSum=0.377;SOR=1.390;set=HC	GT:AD:AF:DP	0/1:15,85:0.85:100
chr8	29940271	rs13279112	A	G	707.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr8	29953256	rs56969689	C	T	2663.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr8	29989399	rs13272159	G	A	361.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:32,19:0.37:51
chr8	29989564	rs7844812	A	G	9121.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	1/1:0,336:1.00:336
chr8	29996158	rs4733141	A	G	2476.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr8	29996256	rs7813902	T	C	863.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr8	30001915	rs12546113	T	G	2612.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr8	30013759	rs7012749	A	C	1447.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr8	30210274	rs4349946	T	C	3339.77	.	AC=1;AF=0.500;AN=2;DB;DP=533;set=Intersection	GT:AD:AF:DP	0/1:346,180:0.34:526
chr8	30394968	rs2979511	G	A	398.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:6,16:0.73:22
chr8	30402817	rs2915595	G	A	508.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:13,22:0.63:35
chr8	30469805	rs7815625	A	C	1097.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:27,54:0.67:81
chr8	30494374	.	TA	T	65.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.705;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=1.495;QD=1.64;ReadPosRankSum=0.238;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:27,13:0.33:40
chr8	30494732	rs5890529	CTTGT	C	1629.73	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:80,47:0.37:127
chr8	30537223	rs10715710	CT	C	630.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.968;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=2.535;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.76;ReadPosRankSum=0.202;SOR=0.358;set=HC	GT:AD:AF:DP	0/1:17,55:0.76:72
chr8	30539623	rs2250192	T	G	1716.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr8	30541915	rs1465477	C	T	1548.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr8	30546636	rs2551715	T	C	2165.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:44,87:0.66:131
chr8	30554006	rs8190996	G	A	7181.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr8	30560887	rs3779647	C	T	2440.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr8	30567423	.	TA	T	806.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.705;ClippingRankSum=0.000;DP=276;ExcessHet=3.0103;FS=6.515;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=3.282;QD=4.27;ReadPosRankSum=1.928;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:97,92:0.49:189
chr8	30601610	rs3217273	TC	T	1676.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr8	30601707	rs189910554	A	G	1216.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:146,74:0.34:220
chr8	30601805	rs2278092	C	T	7629.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:2,308:0.99:310
chr8	30608773	rs1991111	A	G	882.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr8	30608976	rs2911690	C	T	4795.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr8	30609061	rs2911689	T	G	2971.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr8	30609078	rs2911688	A	T	2533.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr8	30620840	rs11388922	G	GT	5026.73	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr8	30620964	rs2956010	T	C	4926.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr8	30623996	rs2956016	T	C	836.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr8	30643538	rs3832549	C	CCTAT	747.73	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:53,23:0.30:76
chr8	30695226	rs2720593	C	T	11244.77	.	AC=2;AF=1.00;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	1/1:0,418:1.00:418
chr8	30700598	rs61740968	T	C	842.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:116,50:0.30:166
chr8	30701995	rs61732457	A	C	1290.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:130,71:0.35:201
chr8	30744615	rs184596951	A	T	739.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:91,41:0.31:132
chr8	30854033	rs2725371	A	G	1996.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr8	30916085	rs2737316	T	C	1765.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr8	30921753	rs7003607	A	G	1851.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:50,86:0.63:136
chr8	30921935	rs2230009	G	A	4779.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:119,214:0.64:333
chr8	30921970	rs4987239	A	T	3507.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:88,150:0.63:238
chr8	30922346	rs2725346	C	T	693.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr8	30924557	rs1800389	C	T	6018.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr8	30925751	rs3087431	T	A	1310.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.727;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.65;ReadPosRankSum=-0.004;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:35,61:0.64:96
chr8	30933816	.	C	CT	103.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.269;ClippingRankSum=0.000;DP=102;ExcessHet=3.0103;FS=1.090;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.23;ReadPosRankSum=-0.562;SOR=0.445;set=HC	GT:AD:AF:DP	0/1:66,18:0.21:84
chr8	30933859	rs4733221	C	T	176.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.731;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=3.555;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.31;ReadPosRankSum=0.202;SOR=0.243;set=HC	GT:AD:AF:DP	0/1:29,12:0.29:41
chr8	30938704	rs1800391	G	A	1145.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:98,60:0.38:158
chr8	30941317	rs2737325	T	C	464.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.750;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=2.538;MLEAC=1;MLEAF=0.500;MQ=52.66;MQRankSum=-8.846;QD=2.85;ReadPosRankSum=-1.410;SOR=0.940;set=HC	GT:AD:AF:DP	0/1:131,32:0.20:163
chr8	30946403	rs3087409	C	A	852.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:19,38:0.67:57
chr8	30948164	rs3087418	C	A	309.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:8,12:0.60:20
chr8	30958353	rs3087419	CT	C	2813.73	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr8	30981971	rs3087417	G	T	1302.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.652;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=19.44;ReadPosRankSum=-0.287;SOR=1.025;set=HC	GT:AD:AF:DP	1/1:5,62:0.93:67
chr8	30998880	rs3087426	TG	T	1372.73	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:30,41:0.58:71
chr8	30999122	rs3024239	C	T	1708.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:143,87:0.38:230
chr8	31005017	rs3087415	T	TC	6571.73	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr8	31024638	rs1801196	C	T	2789.77	.	AC=1;AF=0.500;AN=2;DB;DP=546;set=Intersection	GT:AD:AF:DP	0/1:374,166:0.31:540
chr8	32505909	rs146965117	TAG	T	807.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.288;ClippingRankSum=0.000;DB;DP=323;ExcessHet=3.0103;FS=2.212;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=2.199;QD=3.18;ReadPosRankSum=-0.833;SOR=0.482;set=HC	GT:AD:AF:DP	0/1:207,47:0.19:254
chr8	32613983	rs10503929	T	C	11319.77	.	AC=2;AF=1.00;AN=2;DB;DP=448;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.96;SOR=0.861;set=HC	GT:AD:AF:DP	1/1:0,436:1.00:436
chr8	33246538	rs16880849	A	G	1456.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:167,87:0.34:254
chr8	33246591	rs17855838	G	C	1551.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:151,81:0.35:232
chr8	33246685	rs16880852	G	A	1698.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:118,85:0.42:203
chr8	33354856	.	C	CA	170.14	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.420;ClippingRankSum=0.000;DP=60;ExcessHet=3.0103;FS=3.012;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=0.000;QD=3.34;ReadPosRankSum=0.116;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:33,18:0.35:51
chr8	33370985	rs2581896	A	G	839.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:87,38:0.30:125
chr8	33416189	rs3735950	G	A	464.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.174;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=1.503;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.77;ReadPosRankSum=1.091;SOR=0.891;set=HC	GT:AD:AF:DP	0/1:132,36:0.21:168
chr8	33416222	rs3735951	C	T	567.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.925;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=2.366;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.62;ReadPosRankSum=0.297;SOR=0.901;set=HC	GT:AD:AF:DP	0/1:119,38:0.24:157
chr8	33416303	rs35879627	G	GA	231.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.030;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=3.270;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.44;ReadPosRankSum=-0.252;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:72,23:0.24:95
chr8	33451026	rs2044162	C	T	1625.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:32,69:0.68:101
chr8	35093427	rs10694226	C	CAGCT	364.73	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:6,10:0.62:16
chr8	35425870	rs2589340	T	A	1698.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr8	35650644	.	ACT	A	1337.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.398;ClippingRankSum=0.000;DP=175;ExcessHet=3.0103;FS=0.681;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=2.955;QD=8.06;ReadPosRankSum=-1.690;SOR=0.567;set=HC	GT:AD:AF:DP	0/1:123,43:0.26:166
chr8	36661686	rs12543523	A	C	4156.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:118,195:0.62:313
chr8	36662680	rs16885430	G	T	764.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:24,35:0.59:59
chr8	36662681	rs372618474	A	T	451.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:35,24:0.41:59
chr8	36664713	rs1079679	A	C	860.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:16,31:0.66:47
chr8	36666183	rs1111121	G	A	2805.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:68,122:0.64:190
chr8	36666401	rs7819552	T	C	1299.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:103,60:0.37:163
chr8	36691189	rs10089594	C	T	4314.77	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:139,193:0.58:332
chr8	36698552	.	G	GT	506.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.339;ClippingRankSum=0.000;DP=226;ExcessHet=3.0103;FS=1.083;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.57;ReadPosRankSum=-0.546;SOR=0.484;set=HC	GT:AD:AF:DP	0/1:40,51:0.56:91
chr8	36767024	rs28608091	T	C	1440.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:32,68:0.68:100
chr8	36767085	rs62490754	A	G	457.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:5,19:0.79:24
chr8	36767145	rs13257544	C	G	132.03	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:1,7:0.88:8
chr8	36776267	rs10108041	T	G	1321.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:29,54:0.65:83
chr8	36780209	rs1010669	A	G	806.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:19,30:0.61:49
chr8	36786379	rs17400167	C	A	505.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:8,21:0.72:29
chr8	36786396	rs10089755	C	T	694.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:10,27:0.73:37
chr8	36788693	rs6986249	T	C	1229.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:30,51:0.63:81
chr8	37418127	rs77509159	G	T	1484.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:42,72:0.63:114
chr8	37455990	rs1008547	G	C	2981.77	.	AC=1;AF=0.500;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	0/1:286,163:0.36:449
chr8	37611414	.	CT	C	73.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.786;ClippingRankSum=0.000;DP=85;ExcessHet=3.0103;FS=1.231;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.91;ReadPosRankSum=1.021;SOR=0.448;set=HC	GT:AD:AF:DP	0/1:61,20:0.25:81
chr8	37620076	rs6468438	A	G	1471.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr8	37635649	rs7463174	A	G	1773.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:31,72:0.70:103
chr8	37686749	rs6468442	A	G	1925.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:179,110:0.38:289
chr8	37693302	rs10101560	T	C	476.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:53,23:0.30:76
chr8	37699195	rs4976898	C	G	625.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:87,36:0.29:123
chr8	37728017	rs7817179	A	G	942.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.724;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=0.867;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.82;ReadPosRankSum=1.459;SOR=0.844;set=HC	GT:AD:AF:DP	0/1:68,28:0.29:96
chr8	37728017	.	ATT	GTG	562	.	AC=1;AF=0.500;AN=2;BRF=0.42;FR=0.5000;HP=2;HapScore=1;MGOF=1;MMLQ=24;MQ=60.0;NF=5;NR=12;PP=562;QD=36.203992639;SC=CTTGGTGGCCATTGCATTCAT;SbPval=0.72;Source=Platypus;TC=67;TCF=23;TCR=44;TR=17;WE=37728027;WS=37728007;set=Platypus	GT:AD:AF:DP	0/1:50,17:0.25:67
chr8	37728019	rs7820872	T	G	942.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.076;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=0.875;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.14;ReadPosRankSum=1.108;SOR=0.858;set=HC	GT:AD:AF:DP	0/1:65,28:0.30:93
chr8	37730368	rs12541651	G	A	4531.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr8	37730456	rs7341564	G	T	756.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:99,47:0.32:146
chr8	37730824	.	GT	G	157.73	.	AC=1;AF=0.500;AN=2;DP=21;set=Intersection	GT:AD:AF:DP	0/1:13,7:0.35:20
chr8	37821853	rs2071493	T	C	506.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:32,27:0.46:59
chr8	37822769	rs4997	C	A	495.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:44,25:0.36:69
chr8	37823798	rs4994	A	G	2295.77	.	AC=1;AF=0.500;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	0/1:220,122:0.36:342
chr8	37888017	rs3750243	C	G	667.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.386;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=5.273;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.32;ReadPosRankSum=0.548;SOR=1.742;set=HC	GT:AD:AF:DP	0/1:25,34:0.58:59
chr8	37917273	.	C	CA	118.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.308;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.24;ReadPosRankSum=0.000;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:39,14:0.26:53
chr8	37985897	rs2843740	A	G	7217.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr8	37986561	rs2517394	G	C	3331.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr8	38003787	rs2720050	T	C	15018.77	.	AC=2;AF=1.00;AN=2;DB;DP=567;set=Intersection	GT:AD:AF:DP	1/1:0,561:1.00:561
chr8	38005835	rs2229620	T	C	5921.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr8	38006330	rs35520501	TC	T	7904.73	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr8	38028726	rs2843739	T	C	653.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr8	38034036	.	G	A	391.77	.	AC=1;AF=0.500;AN=2;DP=57;set=Intersection	GT:AD:AF:DP	0/1:38,18:0.32:56
chr8	38176435	rs2234558	T	G	354.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:33,21:0.39:54
chr8	38245598	rs35044708	CT	C	2625.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.122;ClippingRankSum=0.000;DB;DP=353;ExcessHet=3.0103;FS=3.061;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.147;QD=10.06;ReadPosRankSum=1.152;SOR=0.996;set=HC	GT:AD:AF:DP	0/1:53,208:0.80:261
chr8	38265836	rs367636322	C	A	2543.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:60,106:0.64:166
chr8	38369831	rs4733951	A	C	1927.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr8	38370200	rs146268311	GAGACACAGAC	G	1171.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr8	38385795	rs2445020	T	C	3173.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr8	38458371	rs3802323	G	T	4431.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:95,195:0.67:290
chr8	38458552	.	G	GTCT	11258.73	.	AC=2;AF=1.00;AN=2;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr8	38458659	rs327934	C	T	5554.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr8	38458696	rs7812668	T	C	827.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:90,43:0.32:133
chr8	38458802	rs327935	A	C	277.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:7,11:0.61:18
chr8	38646402	rs34210207	G	A	338.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:36,17:0.32:53
chr8	38677932	rs2013586	A	G	2695.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.008;ClippingRankSum=0.000;DB;DP=521;ExcessHet=3.0103;FS=1.955;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.19;ReadPosRankSum=-1.519;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:371,148:0.29:519
chr8	38684853	rs2037204	T	C	1286.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:116,70:0.38:186
chr8	38695996	rs2292741	T	C	1429.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:121,78:0.39:199
chr8	38697649	rs13262797	T	C	331.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr8	38705639	rs71721705	G	GA	165.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.748;ClippingRankSum=0.000;DB;DP=398;ExcessHet=3.0103;FS=0.611;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=3.366;QD=0.51;ReadPosRankSum=0.671;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:270,57:0.17:327
chr8	38709553	rs1135990	C	T	2292.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:52,104:0.67:156
chr8	38803551	rs62504403	T	C	1629.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:31,65:0.68:96
chr8	38809663	rs6984871	A	C	3304.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr8	38826290	rs6996274	G	A	1901.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:1,70:0.99:71
chr8	38827185	rs5891050	GC	G	7421.73	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr8	38835456	rs4733960	T	C	1602.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr8	38835666	rs4733961	T	C	1824.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr8	38839302	.	AT	A	262.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.584;ClippingRankSum=0.000;DP=263;ExcessHet=3.0103;FS=0.643;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.847;QD=1.16;ReadPosRankSum=1.053;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:174,53:0.23:227
chr8	38840591	rs7814264	C	T	10461.77	.	AC=2;AF=1.00;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	1/1:0,386:1.00:386
chr8	38845638	rs66513029	A	C	1782.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.64;SOR=1.791;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr8	38845644	rs202203479	T	TA	277.94	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.858;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=3.750;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=11.12;ReadPosRankSum=-0.502;SOR=2.494;set=HC	GT:AD:AF:DP	1/1:3,22:0.88:25
chr8	38845716	rs7823125	A	G	325.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr8	38848850	rs4733895	C	T	2046.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr8	38853620	rs6991968	G	A	6881.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr8	38853983	rs7840270	C	A	7888.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:1,293:1.00:294
chr8	38865692	.	CT	C	59.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.258;ClippingRankSum=-0.000;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.72;MQRankSum=0.674;QD=4.27;ReadPosRankSum=-3.009;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:7,7:0.50:14
chr8	38872186	rs7833611	C	A	1475.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr8	38876466	rs6474518	T	C	6442.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.83;SOR=1.282;set=HC	GT:AD:AF:DP	1/1:0,147:1.00:147
chr8	38876466	.	TCC	CCT	2947	.	AC=2;AF=1.00;AN=2;BRF=0.48;FR=1.0000;HP=3;HapScore=1;MGOF=0;MMLQ=26;MQ=60.0;NF=34;NR=58;PP=2947;QD=20;SC=TTTCTTCTTTTCCATGAAAAG;SbPval=0.42;Source=Platypus;TC=97;TCF=34;TCR=63;TR=92;WE=38876476;WS=38876456;set=Platypus	GT:AD:AF:DP	1/1:5,92:0.95:97
chr8	38876468	rs6474519	C	T	6442.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.69;SOR=1.228;set=HC	GT:AD:AF:DP	1/1:0,141:1.00:141
chr8	38884342	rs10652213	G	GTTCT	4781.73	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:2,169:0.99:171
chr8	38911953	rs9643905	C	A	3929.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr8	38912121	rs59803430	G	GA	546.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.499;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=3.647;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.008;QD=6.67;ReadPosRankSum=0.568;SOR=0.346;set=HC	GT:AD:AF:DP	0/1:37,45:0.55:82
chr8	38964647	rs4517088	G	A	788.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr8	38964715	rs117223521	T	C	41.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.534;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=2.336;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.46;ReadPosRankSum=-1.138;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:13,4:0.24:17
chr8	38965271	rs59118660	C	T	18578.77	.	AC=2;AF=1.00;AN=2;DB;DP=687;set=Intersection	GT:AD:AF:DP	1/1:0,685:1.00:685
chr8	38975580	.	CTT	C	36.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.085;ClippingRankSum=0.000;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.73;ReadPosRankSum=-1.019;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:43,7:0.14:50
chr8	38987474	rs71552835	CT	C	85.80	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.456;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.15;ReadPosRankSum=-0.447;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:3,9:0.75:12
chr8	38988463	rs10101239	G	A	678.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.959;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.40;ReadPosRankSum=-0.889;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:9,30:0.77:39
chr8	38991720	rs6997278	A	G	862.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:131,50:0.28:181
chr8	39027541	rs74356030	T	C	203.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:13,11:0.46:24
chr8	39068890	rs11786404	A	G	276.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:30,16:0.35:46
chr8	39080632	rs7845771	C	G	8055.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr8	39080824	rs4476978	T	A	875.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr8	39091526	rs4515515	T	C	2179.77	.	AC=1;AF=0.500;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	0/1:303,138:0.31:441
chr8	39114676	rs200807312	GT	G	298.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.246;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=2.316;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.51;ReadPosRankSum=0.955;SOR=0.436;set=HC	GT:AD:AF:DP	0/1:54,31:0.36:85
chr8	39114949	rs73608630	C	T	436.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:36,20:0.36:56
chr8	39128387	rs4733994	C	T	663.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:45,36:0.44:81
chr8	39128510	rs11347842	AT	A	189.73	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:19,15:0.44:34
chr8	39133206	rs4733913	C	G	560.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:32,29:0.48:61
chr8	39311600	rs7813010	C	T	1888.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr8	39311677	rs7834545	T	C	2471.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr8	39312886	rs10097769	G	A	808.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;MQ=59.97;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr8	39330916	rs142026482	ATC	A	60.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.009;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.49;ReadPosRankSum=-0.239;SOR=0.516;set=HC	GT:AD:AF:DP	0/1:111,13:0.10:124
chr8	39349277	.	T	TA	134.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.221;ClippingRankSum=0.000;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.34;MQRankSum=-4.975;QD=1.57;ReadPosRankSum=0.179;SOR=0.821;set=HC	GT:AD:AF:DP	0/1:69,17:0.20:86
chr8	39442292	rs7007924	T	G	6109.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:1,221:1.00:222
chr8	39463063	rs4236751	T	C	294.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr8	39487022	rs3735881	C	T	5076.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr8	39495325	rs3824144	G	A	462.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:34,20:0.37:54
chr8	39496029	rs12708194	T	C	622.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.201;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.42;ReadPosRankSum=1.378;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:78,37:0.32:115
chr8	39496202	rs13278646	G	A	69.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:9,4:0.31:13
chr8	39503079	rs6474161	G	A	142.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:13,7:0.35:20
chr8	39505702	.	G	C	31	.	AC=1;AF=0.500;AN=2;BRF=0.0;FR=0.5003;HP=4;HapScore=2;MGOF=22;MMLQ=28;MQ=60.0;NF=3;NR=0;PP=31;QD=21.9237375157;SC=GAATGTTAAAGATAAGCAATA;SbPval=1.0;Source=Platypus;TC=5;TCF=5;TCR=0;TR=3;WE=39505710;WS=39505694;set=Platypus	GT:AD:AF:DP	1/0:2,3:0.60:5
chr8	39505826	rs3735880	C	A	1405.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr8	39521419	rs6988389	T	C	3009.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:2,119:0.98:121
chr8	39525750	rs2305392	C	A	5203.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr8	39607102	rs113780233	G	GCA	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.481;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=1.527;MLEAC=1;MLEAF=0.500;MQ=61.91;MQRankSum=-1.457;QD=0.67;ReadPosRankSum=1.817;SOR=0.350;set=HC	GT:AD:AF:DP	0/1:54,8:0.13:62
chr8	39607105	rs112217136	C	CATGT	2324.73	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.01;QD=35.77;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr8	39618637	rs10093751	G	T	2132.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr8	39618865	rs10097616	C	G	194.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:9,9:0.50:18
chr8	39644691	rs3779718	C	G	282.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:13,11:0.46:24
chr8	39694610	rs13255763	C	T	866.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:13,36:0.73:49
chr8	39694860	rs61429352	C	A	685.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:13,31:0.70:44
chr8	39776289	rs4259403	C	A	356.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.706;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=3.426;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=-1.358;QD=10.19;ReadPosRankSum=0.540;SOR=1.638;set=HC	GT:AD:AF:DP	0/1:16,19:0.54:35
chr8	39777529	rs7820268	C	T	1503.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:48,68:0.59:116
chr8	39779989	rs10108662	C	A	1831.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:33,77:0.70:110
chr8	39780922	rs10593932	CAAA	C,CAA	1919.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.134;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=6.234;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.17;MQRankSum=0.598;QD=20.42;ReadPosRankSum=0.860;SOR=1.981;set=HC	GT:AD:AF:DP	1/2:11,61,22:0.65,0.23:94
chr8	39785321	rs3739319	G	A	1706.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:39,76:0.66:115
chr8	39842443	rs140841420	C	CTTAT	554.73	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:26,16:0.38:42
chr8	39843139	rs2729472	A	G	161.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.552;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.04;ReadPosRankSum=-0.271;SOR=0.467;set=HC	GT:AD:AF:DP	0/1:28,12:0.30:40
chr8	39862881	rs10109853	C	T	1107.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:128,63:0.33:191
chr8	39862893	rs35212142	T	A	843.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:116,52:0.31:168
chr8	39871036	rs2955897	A	G	1297.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr8	39871298	rs5891075	T	TTAA	5938.73	.	AC=2;AF=1.00;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.34;QD=39.07;SOR=1.462;set=HC	GT:AD:AF:DP	1/1:0,152:1.00:152
chr8	39872668	rs2955902	C	T	3511.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr8	39872676	rs5891076	GA	G	2234.73	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:12,120:0.91:132
chr8	39872866	rs2981161	A	C	12414.77	.	AC=2;AF=1.00;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	1/1:0,448:1.00:448
chr8	39873188	rs2981162	C	T	660.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr8	40011079	rs6474226	G	A	4484.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr8	40389842	rs1429966	T	C	4664.77	.	AC=1;AF=0.500;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	0/1:129,225:0.64:354
chr8	40389933	rs4038741	TAA	T	2730.73	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:34,72:0.68:106
chr8	40438757	rs17851751	T	C	6480.77	.	AC=1;AF=0.500;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	0/1:175,288:0.62:463
chr8	40554742	rs11781516	C	T	785.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:73,42:0.37:115
chr8	40665997	rs1512214	A	G	3841.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr8	40666094	.	C	CA	390.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.598;ClippingRankSum=0.000;DP=361;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=2.702;QD=1.20;ReadPosRankSum=-2.384;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:261,64:0.20:325
chr8	40666189	rs11777437	T	C	2976.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:78,125:0.62:203
chr8	40666257	rs11776726	A	C	951.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:24,44:0.65:68
chr8	41166637	rs3832595	GGCT	G	9054.73	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:3,209:0.99:212
chr8	41297464	rs4736978	T	G	1857.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:155,94:0.38:249
chr8	41297486	rs10637700	T	TTTTG,TTTTGTTTGTTTG	3899.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=193;set=Intersection	GT:AF:DP	1/2:0.68,0.31:87
chr8	41348306	rs112876183	C	T	349.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:58,22:0.28:80
chr8	41348327	rs113202976	G	T	377.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.756;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=1.983;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.50;ReadPosRankSum=0.184;SOR=0.468;set=HC	GT:AD:AF:DP	0/1:81,27:0.25:108
chr8	41348534	rs3780023	C	T	1098.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:98,58:0.37:156
chr8	41363690	rs111703526	A	AT	258.73	.	AC=1;AF=0.500;AN=2;DB;DP=38;MQ=60.57;set=Intersection	GT:AD:AF:DP	0/1:14,18:0.56:32
chr8	41387809	rs34771611	T	C	479.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:65,27:0.29:92
chr8	41387921	rs7819949	C	T	718.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr8	41391588	rs10096250	A	G	556.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr8	41391704	rs10096369	A	G	2230.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr8	41393799	rs11779810	T	C	587.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:18,23:0.56:41
chr8	41466789	rs12708212	T	C	554.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:52,27:0.34:79
chr8	41472375	rs11995712	G	A	723.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:49,37:0.43:86
chr8	41478569	rs11545514	A	G	1156.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:25,52:0.68:77
chr8	41507751	.	C	A	6546.77	.	AC=1;AF=0.500;AN=2;DP=485;set=Intersection	GT:AD:AF:DP	0/1:176,300:0.63:476
chr8	41517958	rs59908561	A	AG	4356.73	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr8	41519248	rs516946	T	C	3022.77	.	AC=1;AF=0.500;AN=2;DB;DP=444;set=Intersection	GT:AD:AF:DP	0/1:278,159:0.36:437
chr8	41519462	rs515071	A	G	2570.77	.	AC=1;AF=0.500;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	0/1:225,134:0.37:359
chr8	41525914	rs750625	C	T	8548.77	.	AC=1;AF=0.500;AN=2;DB;DP=682;set=Intersection	GT:AD:AF:DP	0/1:278,401:0.59:679
chr8	41529856	rs508112	A	G	11348.77	.	AC=2;AF=1.00;AN=2;DB;DP=439;set=Intersection	GT:AD:AF:DP	1/1:0,432:1.00:432
chr8	41553835	rs2304883	G	A	1034.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:27,48:0.64:75
chr8	41553928	rs504574	C	G	1482.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:130,80:0.38:210
chr8	41555740	rs492008	A	G	2909.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr8	41559609	rs2304880	G	A	1626.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:185,95:0.34:280
chr8	41563685	rs1137177	G	A	690.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:112,42:0.27:154
chr8	41571826	rs17660898	C	G	513.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:74,34:0.31:108
chr8	41574736	rs575817	A	C	1526.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr8	41575420	rs2304876	A	C	670.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:7,18:0.72:25
chr8	41580607	rs7826127	T	C	2415.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:58,109:0.65:167
chr8	41580906	rs2304874	G	A	299.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.533;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=6.597;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.47;ReadPosRankSum=1.531;SOR=0.193;set=HC	GT:AD:AF:DP	0/1:49,18:0.27:67
chr8	41585384	rs2304872	T	G	3043.77	.	AC=1;AF=0.500;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	0/1:309,167:0.35:476
chr8	41585438	rs2304871	G	A	5883.77	.	AC=1;AF=0.500;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	0/1:141,274:0.66:415
chr8	41585571	rs1872877	C	T	3377.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.56;SOR=2.229;set=HC	GT:AD:AF:DP	1/1:0,95:1.00:95
chr8	41585571	.	CGCTACG	TGCTACA,TGCTACG	871	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.38;FR=0.5000,0.5000;HP=2;HapScore=2;MGOF=8;MMLQ=28;MQ=60.0;NF=9,20;NR=24,63;PP=541,871;QD=18.0141780261;SC=CCACTGGGCCCGCTACGGGAC;SbPval=0.41;Source=Platypus;TC=83;TCF=20;TCR=63;TR=33,83;WE=41585585;WS=41585561;set=Platypus	GT:AF:DP	0/1:0.40:83
chr8	41585577	rs2304870	G	A	876.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.593;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=5.004;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.74;ReadPosRankSum=-0.578;SOR=0.303;set=HC	GT:AD:AF:DP	0/1:50,40:0.44:90
chr8	41615429	rs486223	G	A	1242.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr8	41685814	rs12708213	A	C	1992.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:67,87:0.56:154
chr8	41685845	rs13438989	T	G	3156.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:97,149:0.61:246
chr8	41686017	rs13439740	C	T	5505.77	.	AC=1;AF=0.500;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	0/1:129,241:0.65:370
chr8	41753843	rs77115522	C	G	4175.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr8	41791984	.	C	G	5547.77	.	AC=1;AF=0.500;AN=2;DP=409;set=Intersection	GT:AD:AF:DP	0/1:163,242:0.60:405
chr8	41794934	rs13748	C	T	9219.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	1/1:2,348:0.99:350
chr8	41805249	rs10504048	C	T	9228.77	.	AC=2;AF=1.00;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	1/1:4,353:0.99:357
chr8	41838503	rs11990460	G	A	6142.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr8	42012186	rs35071361	T	C	1352.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:21,57:0.73:78
chr8	42013563	rs150778126	T	TATG	1655.73	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:227,98:0.30:325
chr8	42025838	rs3827659	T	C	2712.77	.	AC=1;AF=0.500;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	0/1:269,157:0.37:426
chr8	42026393	rs7016041	T	C	1183.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:133,66:0.33:199
chr8	42036577	rs1136159	A	G	485.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:70,32:0.31:102
chr8	42037630	rs2020923	C	T	784.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:73,39:0.35:112
chr8	42037924	rs2020922	T	A	7375.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:3,295:0.99:298
chr8	42042792	.	CT	C	30.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.405;ClippingRankSum=0.000;DP=68;ExcessHet=3.0103;FS=3.491;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.55;ReadPosRankSum=1.236;SOR=0.237;set=HC	GT:AD:AF:DP	0/1:45,11:0.20:56
chr8	42044897	rs8178749	C	T	2077.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:181,112:0.38:293
chr8	42147894	rs2294097	G	A	179.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:45,14:0.24:59
chr8	42163669	rs3817717	G	A	446.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:25,19:0.43:44
chr8	42172017	rs7814513	C	G	2978.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:57,122:0.68:179
chr8	42175303	rs2294100	A	T	3760.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:80,166:0.67:246
chr8	42178101	rs17875748	C	T	607.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:10,23:0.70:33
chr8	42186579	rs2272732	T	C	1444.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:49,62:0.56:111
chr8	42188550	rs1057741	A	G	2644.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr8	42196441	rs3136717	C	T	3331.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:62,136:0.69:198
chr8	42227777	rs67383545	GTT	G,GT	999.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.906;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=3.647;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=28.56;ReadPosRankSum=-0.831;SOR=2.376;set=HC	GT:AD:AF:DP	1/2:4,19,12:0.54,0.34:35
chr8	42227789	rs202121458	T	G	156.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.237;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=8.536;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.85;ReadPosRankSum=4.189;SOR=2.043;set=HC	GT:AD:AF:DP	0/1:36,19:0.35:55
chr8	42229059	rs2307163	G	GT	616.73	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:76,37:0.33:113
chr8	42231786	rs2073664	G	A	1266.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:112,70:0.38:182
chr8	42232160	rs2073663	C	T	505.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:59,25:0.30:84
chr8	42232489	rs2073665	A	G	1405.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:129,73:0.36:202
chr8	42233448	rs10096210	G	A	470.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:46,24:0.34:70
chr8	42252500	rs59791694	A	G	284.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:18,16:0.47:34
chr8	42259299	rs3736649	A	G	1572.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:107,80:0.43:187
chr8	42323207	rs376182049	CA	C	91.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.961;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=1.290;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=2.328;QD=1.12;ReadPosRankSum=-1.534;SOR=0.376;set=HC	GT:AD:AF:DP	0/1:58,24:0.29:82
chr8	42404040	rs2974349	C	T	491.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:10,18:0.64:28
chr8	42552633	rs4950	G	A	2068.77	.	AC=1;AF=0.500;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	0/1:258,119:0.32:377
chr8	42587796	rs4954	G	A	192.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:19,10:0.34:29
chr8	42761230	.	CAA	C	252.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.575;ClippingRankSum=0.000;DP=102;ExcessHet=3.0103;FS=5.907;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.66;ReadPosRankSum=1.256;SOR=0.833;set=HC	GT:AD:AF:DP	0/1:17,16:0.48:33
chr8	42761288	.	TC	T	315.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.330;ClippingRankSum=0.000;DP=155;ExcessHet=3.0103;FS=4.437;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.19;ReadPosRankSum=1.062;SOR=0.072;set=HC	GT:AD:AF:DP	0/1:33,18:0.35:51
chr8	42780832	rs34821062	A	AT	454.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:11,25:0.69:36
chr8	42798394	.	G	GT	130.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.909;ClippingRankSum=0.000;DP=102;ExcessHet=3.0103;FS=0.971;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.32;ReadPosRankSum=1.181;SOR=0.924;set=HC	GT:AD:AF:DP	0/1:75,24:0.24:99
chr8	42865753	rs56065225	A	C	50.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.309;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=3.010;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.08;ReadPosRankSum=-2.074;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:6,4:0.40:10
chr8	42868455	.	CTT	C,CT	830.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=50;set=Intersection	GT:AF:DP	1/2:0.29,0.69:48
chr8	42882555	rs111931018	A	ATTTGT	7060.73	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr8	42959007	rs5024011	C	A	3620.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr8	43002052	rs375505816	CT	C	241.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.459;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=0.883;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=3.443;QD=1.40;ReadPosRankSum=0.223;SOR=0.516;set=HC	GT:AD:AF:DP	0/1:123,50:0.29:173
chr8	43013936	rs10958738	C	T	1384.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:22,60:0.73:82
chr8	43047593	rs17603428	G	A	1928.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:59,89:0.60:148
chr8	43054553	rs1126058	T	C	3492.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr8	43147987	rs58986182	CGT	C	247.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.174;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=1.136;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.95;ReadPosRankSum=0.492;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:69,15:0.18:84
chr8	47759712	rs3849804	T	G	6693.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr8	48320563	rs34569190	AT	A	2499.73	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:2,119:0.98:121
chr8	48614647	rs369245708	TCTCTCTCTCTCTTACACACA	T	364.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.940;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.40;MQRankSum=0.090;QD=11.40;ReadPosRankSum=0.791;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:12,20:0.62:32
chr8	48696150	.	C	CA	93.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.166;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=1.322;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.46;ReadPosRankSum=0.268;SOR=0.450;set=HC	GT:AD:AF:DP	0/1:50,14:0.22:64
chr8	48732074	.	T	TA	92.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.088;ClippingRankSum=0.000;DP=31;ExcessHet=3.0103;FS=1.871;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.88;ReadPosRankSum=1.065;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:10,9:0.47:19
chr8	48805816	rs11411516	A	AG	10937.73	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr8	48846519	rs1231202	T	C	1528.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr8	48866788	rs1231203	T	G	210.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr8	48885436	rs762679	T	A	4226.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:2,162:0.99:164
chr8	49641784	rs1482261	A	G	1262.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr8	49642357	rs61733121	G	A	997.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:86,55:0.39:141
chr8	49643243	rs966703	A	G	5167.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr8	51306704	rs7015950	A	G	3836.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr8	51362462	rs1481475	A	G	3457.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr8	51363078	rs7817955	C	T	945.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr8	51363430	rs12542191	A	T	237.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr8	51571172	rs1911830	G	A	7359.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr8	51571370	rs1911831	G	A	1552.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr8	51617430	rs7003356	T	A	1631.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr8	51664842	rs6473337	C	A	254.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:19,13:0.41:32
chr8	52284654	rs5891410	C	CA	1507.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.418;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=19.33;ReadPosRankSum=-0.321;SOR=0.954;set=HC	GT:AD:AF:DP	1/1:4,74:0.95:78
chr8	52321243	rs2977020	T	C	9849.77	.	AC=2;AF=1.00;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	1/1:0,353:1.00:353
chr8	52321859	.	C	T	1287.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.103;ClippingRankSum=0.000;DP=370;ExcessHet=3.0103;FS=0.455;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.59;ReadPosRankSum=-0.422;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:276,83:0.23:359
chr8	52325879	rs1560511	T	G	5791.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr8	52336041	rs2060107	G	C	3918.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr8	52359454	rs151149131	CTA	C	416.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.338;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=0.968;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.82;ReadPosRankSum=-1.734;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:124,24:0.16:148
chr8	52361772	rs1431636	G	A	1308.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr8	52366200	rs6473599	G	A	7713.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr8	52396048	rs1431632	C	T	1231.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr8	52412226	rs755311	G	T	10280.77	.	AC=2;AF=1.00;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	1/1:0,392:1.00:392
chr8	52567361	rs17277222	A	T	1359.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:137,72:0.34:209
chr8	52567459	rs11777938	A	G	495.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:44,26:0.37:70
chr8	52721958	rs13252785	T	C	389.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:6,18:0.75:24
chr8	52730441	rs6768	T	C	2086.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.876;ClippingRankSum=0.000;DB;DP=944;ExcessHet=3.0103;FS=0.668;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.23;ReadPosRankSum=-0.261;SOR=0.825;set=HC	GT:AD:AF:DP	0/1:755,182:0.19:937
chr8	52730521	rs4401853	C	T	12855.77	.	AC=2;AF=1.00;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	1/1:0,455:1.00:455
chr8	52733050	rs12335014	T	A	2997.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:87,144:0.62:231
chr8	52733076	.	T	C	849	.	AC=1;AF=0.500;AN=2;BRF=0.51;FR=0.5000;HP=1;HapScore=1;MGOF=21;MMLQ=23;MQ=51.22;NF=50;NR=19;PP=849;QD=12.8082784427;SC=TTTCATCCTCTTCACTGTCTA;SbPval=0.97;Source=Platypus;TC=223;TCF=125;TCR=98;TR=69;WE=52733084;WS=52733066;set=Platypus	GT:AD:AF:DP	1/0:154,69:0.31:223
chr8	52733121	.	G	A	286.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.644;ClippingRankSum=0.000;DP=281;ExcessHet=3.0103;FS=1.717;MLEAC=1;MLEAF=0.500;MQ=56.18;MQRankSum=-2.973;QD=1.04;ReadPosRankSum=0.944;SOR=0.496;set=HC	GT:AD:AF:DP	0/1:251,26:0.09:277
chr8	52733128	rs62506083	T	G	3915.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.576;ClippingRankSum=0.000;DB;DP=269;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.01;MQRankSum=-11.117;QD=14.78;ReadPosRankSum=4.522;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:132,133:0.50:265
chr8	52733143	rs111785933	A	G	388.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.933;ClippingRankSum=0.000;DB;DP=242;ExcessHet=3.0103;FS=2.883;MLEAC=1;MLEAF=0.500;MQ=55.54;MQRankSum=-2.173;QD=1.63;ReadPosRankSum=3.174;SOR=0.403;set=HC	GT:AD:AF:DP	0/1:212,26:0.11:238
chr8	52733148	rs76104220	C	T	279.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.287;ClippingRankSum=0.000;DB;DP=237;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.38;MQRankSum=-5.248;QD=1.20;ReadPosRankSum=1.395;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:193,40:0.17:233
chr8	52733228	rs73592211	G	A	314.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.669;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=5.837;MLEAC=1;MLEAF=0.500;MQ=56.44;MQRankSum=-2.315;QD=3.06;ReadPosRankSum=-2.077;SOR=1.527;set=HC	GT:AD:AF:DP	0/1:85,18:0.17:103
chr8	52733340	rs35006940	A	AT	737.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr8	52746153	rs9298462	C	T	2408.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:98,117:0.54:215
chr8	52811580	rs139799580	G	A	2500.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.017;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=1.505;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.45;ReadPosRankSum=1.025;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:36,116:0.76:152
chr8	52811681	rs10106734	A	G	2073.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr8	52811758	rs13263909	C	T	247.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:7,11:0.61:18
chr8	52858979	rs77831588	G	A	264.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:37,14:0.27:51
chr8	53055353	rs7006725	C	A	764.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:43,32:0.43:75
chr8	53055483	rs7010548	C	T	2283.77	.	AC=1;AF=0.500;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	0/1:230,124:0.35:354
chr8	53447256	rs1440798	C	A	491.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:43,26:0.38:69
chr8	53450969	rs13280500	A	C	413.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:30,23:0.43:53
chr8	53452359	rs34430102	T	TA	376.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.870;ClippingRankSum=0.000;DB;DP=252;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=2.448;QD=1.58;ReadPosRankSum=-0.128;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:188,51:0.21:239
chr8	53454826	rs16917962	C	A	1648.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:201,100:0.33:301
chr8	53543090	rs57977265	T	TA	118.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.512;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.36;ReadPosRankSum=-0.791;SOR=0.831;set=HC	GT:AD:AF:DP	0/1:65,22:0.25:87
chr8	53548691	rs7818347	T	C	155.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:15,9:0.38:24
chr8	53570529	rs12708142	C	A	2364.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr8	53586706	rs17337252	A	G	7088.77	.	AC=1;AF=0.500;AN=2;DB;DP=479;set=Intersection	GT:AD:AF:DP	0/1:153,317:0.67:470
chr8	53599373	rs17337384	T	C	1719.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:76,78:0.51:154
chr8	53852871	rs33977775	A	T	6198.77	.	AC=1;AF=0.500;AN=2;DB;DP=1094;set=Intersection	GT:AD:AF:DP	0/1:733,348:0.32:1081
chr8	54141824	rs963549	C	T	345.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:29,18:0.38:47
chr8	54142157	rs702764	T	C	1386.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.531;ClippingRankSum=0.000;DB;DP=304;ExcessHet=3.0103;FS=2.805;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.67;ReadPosRankSum=-0.367;SOR=0.881;set=HC	GT:AD:AF:DP	0/1:210,87:0.29:297
chr8	54745538	rs6991513	C	G	1215.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:155,70:0.31:225
chr8	54793783	.	C	CCGGTGCGAGTCGGGGGTTCCTTCCCG	730.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.293;ClippingRankSum=0.000;DP=52;ExcessHet=3.0103;FS=2.062;MLEAC=1;MLEAF=0.500;MQ=62.45;MQRankSum=3.502;QD=25.20;ReadPosRankSum=3.789;SOR=0.260;set=HC	GT:AD:AF:DP	0/1:11,18:0.62:29
chr8	54866491	rs6981243	C	A	764.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:9,29:0.76:38
chr8	55047719	rs2292589	C	G	323.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:6,14:0.70:20
chr8	55048118	rs12679542	G	T	913.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.236;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=7.161;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=0.653;QD=16.61;ReadPosRankSum=-0.104;SOR=0.169;set=HC	GT:AD:AF:DP	0/1:15,40:0.73:55
chr8	55048130	.	CTTTTTTTTTT	C	520.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.125;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=0.808;QD=24.80;ReadPosRankSum=1.529;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:7,14:0.67:21
chr8	55049255	rs2271567	G	T	2562.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:73,118:0.62:191
chr8	55050047	rs7830051	A	G	498.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:11,23:0.68:34
chr8	55059927	rs12679103	T	G	1110.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.974;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=1.156;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.62;ReadPosRankSum=1.178;SOR=0.467;set=HC	GT:AD:AF:DP	0/1:32,44:0.58:76
chr8	55539395	rs2293869	A	T	10531.77	.	AC=2;AF=1.00;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	1/1:1,383:1.00:384
chr8	55542540	rs61739567	G	A	2902.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr8	55590975	rs382476	G	A	594.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr8	55592336	rs405226	A	G	1795.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr8	55613902	rs858396	C	T	297.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr8	55647367	rs112017805	A	AGT	2827.73	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:18,97:0.84:115
chr8	55671690	.	C	CTG	80.06	.	AC=2;AF=1.00;AN=2;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.02;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr8	56048060	rs1480763	T	A	5300.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr8	56048107	rs1480764	C	T	7100.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:2,271:0.99:273
chr8	56054696	rs11785942	C	T	8547.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:2,320:0.99:322
chr8	56185702	.	CTGTGTGTGTGTG	C,CTG	814	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.1;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=6;MMLQ=22;MQ=60.2;NF=0,0;NR=20,20;PP=550,814;QD=27.65;SC=GAAAAGAGGACTGTGTGTGTG;SbPval=1.0;Source=Platypus;TC=47;TCF=0;TCR=47;TR=20,20;WE=56185721;WS=56185692;set=Platypus	GT:AF:DP	0/1:0.43:47
chr8	56656195	rs7836019	T	C	6741.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr8	56657499	rs79874244	C	T	46.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:4,3:0.43:7
chr8	56657801	rs4738457	C	T	504.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr8	56686224	rs1818	T	C	4930.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr8	56792586	rs1050855	G	A	3329.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.164;ClippingRankSum=0.000;DB;DP=561;ExcessHet=3.0103;FS=0.547;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.00;ReadPosRankSum=0.054;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:362,193:0.35:555
chr8	56792685	rs167999	G	A	7655.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr8	56863439	rs7829420	G	A	207.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:30,12:0.29:42
chr8	56882183	rs1027987	A	G	681.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:28,27:0.49:55
chr8	56882471	rs1027986	A	G	1367.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:109,66:0.38:175
chr8	56911861	rs2175487	A	G	510.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:22,25:0.53:47
chr8	57125254	rs13264103	G	A	668.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:47,33:0.41:80
chr8	57125270	rs6474051	T	C	2878.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr8	57285647	rs10091783	T	G	2871.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:81,132:0.62:213
chr8	57287545	rs11774683	C	T	487.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:14,22:0.61:36
chr8	57294501	rs10216893	T	C	764.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:24,37:0.61:61
chr8	57294571	rs10216409	C	G	783.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.607;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=2.090;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.88;ReadPosRankSum=-0.373;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:26,40:0.61:66
chr8	57294907	.	G	GTTT	288.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.594;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=6.794;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.49;ReadPosRankSum=-0.805;SOR=2.797;set=HC	GT:AD:AF:DP	0/1:18,16:0.47:34
chr8	57295200	rs7002482	C	T	2632.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:64,114:0.64:178
chr8	57302927	rs34478796	A	ATT	434.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.417;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.35;ReadPosRankSum=0.669;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:10,32:0.76:42
chr8	57335839	rs10101218	T	C	3992.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:96,191:0.67:287
chr8	57335918	rs10110961	G	C	5206.77	.	AC=1;AF=0.500;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	0/1:126,237:0.65:363
chr8	57358251	rs3808634	C	T	1518.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:29,62:0.68:91
chr8	57358563	rs3840716	CG	C	3162.73	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:46,106:0.70:152
chr8	59329438	rs13277646	A	G	475.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:57,28:0.33:85
chr8	59347184	rs1993453	A	G	472.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:55,26:0.32:81
chr8	59484899	rs7827910	T	A	773.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.091;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.82;ReadPosRankSum=-0.177;SOR=0.798;set=HC	GT:AD:AF:DP	0/1:18,38:0.68:56
chr8	59494089	rs28656336	G	T	663.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:14,31:0.69:45
chr8	59498190	rs12677290	G	A	1853.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:32,74:0.70:106
chr8	59498614	rs6995115	A	G	2822.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:97,132:0.58:229
chr8	59498685	rs12679938	T	G	936.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:30,38:0.56:68
chr8	59499237	rs3816846	G	A	880.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:25,38:0.60:63
chr8	59508076	rs16923588	A	G	3682.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:96,155:0.62:251
chr8	59508244	rs55965030	CT	C	6213.73	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:123,183:0.60:306
chr8	59511756	rs10111180	C	T	2825.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:87,115:0.57:202
chr8	59512334	rs2680903	G	A	11409.77	.	AC=2;AF=1.00;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	1/1:0,428:1.00:428
chr8	59514105	rs33942423	G	GA	400.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.575;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=1.709;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=2.175;QD=4.17;ReadPosRankSum=-0.019;SOR=0.484;set=HC	GT:AD:AF:DP	0/1:58,38:0.40:96
chr8	59514773	rs17265530	A	G	342.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:29,16:0.36:45
chr8	59515669	rs78629641	C	A	558.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:26,25:0.49:51
chr8	59518416	rs184713109	G	T	551.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.531;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.46;ReadPosRankSum=-0.316;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:45,29:0.39:74
chr8	59518439	.	CA	C	189.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.828;ClippingRankSum=0.000;DP=135;ExcessHet=3.0103;FS=2.152;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.68;ReadPosRankSum=-0.059;SOR=0.456;set=HC	GT:AD:AF:DP	0/1:77,36:0.32:113
chr8	59518611	rs144708345	A	AAAATAATAAAAT	2363.73	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:27,59:0.69:86
chr8	59535859	.	ATT	A,ACGTT	1627.73	.	AC=2,0;AF=1.00,0.00;ALERT;AN=2;DP=38;set=Intersection	GT:AF:DP	1/1:1.00:35
chr8	59535861	.	T	TCGAA	1627.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.51;SOR=1.148;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr8	59544252	rs17206746	A	T	350.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:6,13:0.68:19
chr8	59547804	rs10113830	C	A	921.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:28,41:0.59:69
chr8	59555731	rs1387222	T	A	2760.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:2,98:0.98:100
chr8	59720604	rs2726600	G	A	692.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:42,28:0.40:70
chr8	59739333	rs4737522	C	T	1464.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:188,86:0.31:274
chr8	59739438	rs56215946	A	C	3613.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:80,167:0.68:247
chr8	59750932	rs72649459	C	T	961.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:15,37:0.71:52
chr8	59764368	rs3837195	CAATA	C	523.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.29;SOR=5.283;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr8	59852168	rs3832587	A	AAC	805.73	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:25,23:0.48:48
chr8	59872615	rs3780001	T	G	5594.77	.	AC=1;AF=0.500;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	0/1:124,245:0.66:369
chr8	61139280	rs12549573	C	T	1059.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr8	61139319	rs12549574	C	T	1106.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:26,51:0.66:77
chr8	61144790	rs73683396	G	T	915.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:130,53:0.29:183
chr8	61429877	rs79102981	G	A	226.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:39,15:0.28:54
chr8	61484788	rs3735825	C	G	95.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:3,5:0.62:8
chr8	61488824	rs2981277	T	C	1686.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:194,99:0.34:293
chr8	61488859	rs2946154	A	G	1855.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:208,103:0.33:311
chr8	61496950	rs3735826	C	T	490.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:23,21:0.48:44
chr8	61655690	rs7836586	G	A	1720.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:64,74:0.54:138
chr8	61707725	rs4540437	G	A	2800.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:71,120:0.63:191
chr8	61713126	rs5891777	A	ATGGACT	4183.73	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:44,103:0.70:147
chr8	61714245	rs10448027	A	G	1860.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.449;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=0.866;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.55;ReadPosRankSum=-1.201;SOR=0.561;set=HC	GT:AD:AF:DP	0/1:29,77:0.73:106
chr8	61732521	rs6471902	A	G	1125.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:30,46:0.61:76
chr8	61748893	rs7005873	C	A	518.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:8,23:0.74:31
chr8	61750860	rs7844902	A	G	2680.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:69,119:0.63:188
chr8	61766134	rs117896093	G	A	125.88	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:1,5:0.83:6
chr8	61851466	rs3748648	T	C	1715.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;MQ=59.85;set=Intersection	GT:AD:AF:DP	0/1:54,78:0.59:132
chr8	62003453	rs1367972	A	G	9345.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:0,340:1.00:340
chr8	62003547	rs35220668	G	GC	2832.73	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:97,142:0.59:239
chr8	62289060	rs10957192	C	T	521.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:17,22:0.56:39
chr8	62371122	rs33963114	GC	G	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.271;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=19.323;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.29;ReadPosRankSum=-0.790;SOR=0.029;set=HC	GT:AD:AF:DP	0/1:107,16:0.13:123
chr8	62371260	rs2291607	C	T	776.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr8	62411925	rs71559334	G	GAAAT	4288.73	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:65,105:0.62:170
chr8	62416074	rs7005617	G	A	2744.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr8	62416173	rs16918881	G	A	139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.776;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=1.413;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.18;ReadPosRankSum=-1.020;SOR=0.430;set=HC	GT:AD:AF:DP	0/1:33,11:0.25:44
chr8	62438530	rs4738904	A	G	2156.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr8	62460886	rs10113272	A	G	482.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.850;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.94;ReadPosRankSum=-1.308;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:8,14:0.64:22
chr8	62460894	rs16927479	G	A	367.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.027;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=3.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.43;ReadPosRankSum=-0.237;SOR=2.147;set=HC	GT:AD:AF:DP	0/1:8,10:0.56:18
chr8	62465580	rs4289805	T	C	1485.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:184,87:0.32:271
chr8	62465795	rs4291265	T	C	147.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:16,7:0.30:23
chr8	62465814	rs4379440	G	T	133.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:14,7:0.33:21
chr8	62475160	rs3802287	A	G	335.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:5,15:0.75:20
chr8	62475276	rs3802286	C	T	1706.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:55,80:0.59:135
chr8	62475518	rs3824269	G	C	287.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:13,13:0.50:26
chr8	62479925	rs61226013	T	A	1735.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:140,95:0.40:235
chr8	62479934	rs10090754	C	T	2552.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:82,119:0.59:201
chr8	62489214	rs55767984	T	A	753.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:79,36:0.31:115
chr8	62489334	rs16927574	C	T	2874.77	.	AC=1;AF=0.500;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	0/1:269,159:0.37:428
chr8	62496415	rs6471962	C	T	367.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.777;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=1.447;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=-1.002;QD=10.82;ReadPosRankSum=-0.760;SOR=1.165;set=HC	GT:AD:AF:DP	0/1:16,18:0.53:34
chr8	62531670	rs35550451	T	C	149.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:19,8:0.30:27
chr8	62531698	rs118053938	T	C	284.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:5,10:0.67:15
chr8	62545288	rs2882462	C	T	3020.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr8	62550924	rs34108497	T	TA	1210.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.331;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=5.269;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.84;ReadPosRankSum=1.332;SOR=1.246;set=HC	GT:AD:AF:DP	0/1:38,85:0.69:123
chr8	62556590	rs7825861	C	T	568.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:16,25:0.61:41
chr8	62563718	rs7016408	G	T	725.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:29,33:0.53:62
chr8	62563764	rs7016141	A	G	1060.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr8	62595068	rs3750278	C	T	5436.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr8	62602295	.	C	CA	48.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.118;ClippingRankSum=0.000;DP=295;ExcessHet=3.0103;FS=0.666;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=0.000;QD=0.18;ReadPosRankSum=0.138;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:232,43:0.16:275
chr8	62626762	rs140984492	C	T	77.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:11,5:0.31:16
chr8	62626962	rs3829051	C	T	1829.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:36,80:0.69:116
chr8	62627004	rs3750279	A	G	1145.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:26,47:0.64:73
chr8	63257441	rs4442138	T	G	399.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr8	63295978	rs62509214	G	T	341.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:9,15:0.62:24
chr8	63296132	rs10808724	T	G	3585.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.695;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=1.947;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.86;ReadPosRankSum=0.266;SOR=0.589;set=HC	GT:AD:AF:DP	0/1:71,93:0.57:164
chr8	63296138	rs62509215	A	T	3632.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.174;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=1.240;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.29;ReadPosRankSum=-0.279;SOR=0.558;set=HC	GT:AD:AF:DP	0/1:70,93:0.57:163
chr8	63502151	rs2306401	C	T	427.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:36,20:0.36:56
chr8	63502434	rs72423486	TTGTGTGTGTGTGTG	T	675.73	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:5,20:0.80:25
chr8	63942717	rs4617146	C	T	2610.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr8	63948073	rs12682204	C	G	965.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:24,43:0.64:67
chr8	63948134	rs6998383	A	G	3765.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.52;SOR=1.163;set=HC	GT:AD:AF:DP	1/1:0,142:1.00:142
chr8	63948185	rs199816014	TAA	T	6225.73	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:64,167:0.72:231
chr8	63948198	rs34099334	A	C	3766.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:82,164:0.67:246
chr8	63951237	rs11545077	C	T	8534.77	.	AC=1;AF=0.500;AN=2;DB;DP=645;set=Intersection	GT:AD:AF:DP	0/1:250,393:0.61:643
chr8	63951312	rs1800909	A	G	5805.77	.	AC=1;AF=0.500;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	0/1:148,263:0.64:411
chr8	63976677	rs4606052	C	T	285.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:27,16:0.37:43
chr8	63976754	rs4501570	A	G	700.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:50,35:0.41:85
chr8	63978658	rs5891887	TA	T	5708.73	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:1,254:1.00:255
chr8	64098729	rs58419856	A	AG	3744.73	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr8	65290650	rs298212	C	T	7374.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr8	65509520	rs117657667	T	C	833.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:50,37:0.43:87
chr8	65711004	rs7842714	T	A	275.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.568;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.92;ReadPosRankSum=-2.491;SOR=0.621;set=HC	GT:AD:AF:DP	0/1:37,19:0.34:56
chr8	66517486	rs3765205	C	T	1336.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr8	66525548	rs11559265	T	C	2903.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:2,114:0.98:116
chr8	66691934	rs972362	T	A	2257.77	.	AC=1;AF=0.500;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	0/1:222,121:0.35:343
chr8	67066238	rs34117579	CT	C	905.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.088;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=2.533;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=1.170;QD=8.23;ReadPosRankSum=-0.314;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:48,62:0.56:110
chr8	67068131	rs2446433	T	C	2519.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr8	67105449	rs11357679	CT	C	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.451;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=0.842;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.32;ReadPosRankSum=2.477;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:104,26:0.20:130
chr8	67356375	rs11354983	GT	G	459.73	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:7,17:0.71:24
chr8	67357335	rs143198813	C	CA	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.341;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=2.066;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.38;ReadPosRankSum=0.348;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:17,6:0.26:23
chr8	67357690	rs1025228	G	T	464.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr8	67361018	rs12544088	G	C	538.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:36,26:0.42:62
chr8	67361334	rs11299684	AC	A	729.73	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:11,28:0.72:39
chr8	67364085	rs2465982	T	C	2297.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr8	67365860	rs7014306	C	T	1161.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:34,50:0.60:84
chr8	67366221	rs147080598	C	T	1258.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:83,62:0.43:145
chr8	67369184	rs2303519	C	T	426.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:25,18:0.42:43
chr8	67369355	rs2555588	G	C	1988.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:67,98:0.59:165
chr8	67380377	rs2719005	C	T	2433.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr8	67380528	rs1060242	T	C	8076.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chr8	67380677	rs13682	C	T	3128.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr8	67411019	rs2251827	T	C	1178.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr8	67488510	rs371430055	T	C	6029.77	.	AC=1;AF=0.500;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	0/1:152,261:0.63:413
chr8	67590460	rs6983214	C	T	2143.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr8	67592152	rs1057463	T	C	6916.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:1,252:1.00:253
chr8	67710676	.	C	CA	100	.	AC=1;AF=0.500;AN=2;BRF=0.39;FR=0.5644;HP=15;HapScore=3;MGOF=80;MMLQ=23;MQ=59.51;NF=7;NR=2;PP=100;QD=11.4444444444;SC=CAGACTGTCTCAAAAAAAAAA;SbPval=0.8;Source=Platypus;TC=13;TCF=9;TCR=4;TR=9;WE=67710684;WS=67710666;set=Platypus	GT:AD:AF:DP	1/0:4,9:0.69:13
chr8	67753176	rs200796293	CA	C	63.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.361;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.59;ReadPosRankSum=-0.022;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:26,14:0.35:40
chr8	67755920	rs7008720	C	A	795.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr8	67789706	rs116880118	A	C	740.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:64,39:0.38:103
chr8	67813633	rs2358008	A	G	3404.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr8	67969596	.	T	TA	111.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.002;ClippingRankSum=0.000;DP=213;ExcessHet=3.0103;FS=0.769;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.56;ReadPosRankSum=-2.722;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:162,36:0.18:198
chr8	67970243	rs6997490	A	G	835.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:50,36:0.42:86
chr8	67999123	rs75348559	CT	C	105.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.492;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=1.198;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.63;ReadPosRankSum=-0.055;SOR=0.469;set=HC	GT:AD:AF:DP	0/1:45,20:0.31:65
chr8	68062182	.	CTT	C	802.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.492;ClippingRankSum=0.000;DP=126;ExcessHet=3.0103;FS=5.576;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=1.313;QD=14.08;ReadPosRankSum=1.237;SOR=1.863;set=HC	GT:AD:AF:DP	0/1:14,43:0.75:57
chr8	68066164	rs11784423	T	A	105.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.450;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.29;ReadPosRankSum=2.001;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:13,7:0.35:20
chr8	68130443	rs66494911	AT	A	57.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.276;ClippingRankSum=-0.000;DB;DP=19;ExcessHet=3.0103;FS=2.817;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.81;ReadPosRankSum=1.886;SOR=0.136;set=HC	GT:AD:AF:DP	0/1:7,5:0.42:12
chr8	68208888	rs200022882	T	C	1173.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.631;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=1.212;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.78;ReadPosRankSum=-0.007;SOR=0.442;set=HC	GT:AD:AF:DP	0/1:22,44:0.67:66
chr8	68211691	rs35570525	T	TA	170.73	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:23,12:0.34:35
chr8	68395836	rs72655000	T	C	988.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:19,40:0.68:59
chr8	68421998	rs1503369	T	C	160.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr8	68864728	rs61753697	G	A	2499.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:76,116:0.60:192
chr8	68999925	rs34854177	C	T	950.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:65,47:0.42:112
chr8	69002965	rs12544121	A	G	765.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:42,36:0.46:78
chr8	69003009	rs34882769	GT	G	573.73	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:17,20:0.54:37
chr8	69009352	.	TG	T	2185.73	.	AC=1;AF=0.500;AN=2;DP=194;set=Intersection	GT:AD:AF:DP	0/1:123,62:0.34:185
chr8	69009355	.	G	T	2194.77	.	AC=1;AF=0.500;AN=2;DP=188;set=Intersection	GT:AD:AF:DP	0/1:122,62:0.34:184
chr8	69009561	rs5892134	C	CT	35.80	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.369;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=9.700;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.48;ReadPosRankSum=0.732;SOR=3.596;set=HC	GT:AD:AF:DP	0/1:3,5:0.62:8
chr8	69012364	rs1529819	G	A	522.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:57,29:0.34:86
chr8	69013865	rs10098030	G	A	482.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:38,21:0.36:59
chr8	69015242	rs1014663	T	C	857.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:53,42:0.44:95
chr8	69016055	rs13262734	A	G	382.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:46,20:0.30:66
chr8	69020496	rs4260880	T	C	2275.77	.	AC=1;AF=0.500;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	0/1:249,134:0.35:383
chr8	69033084	rs1160174	G	A	841.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:70,39:0.36:109
chr8	69104521	rs6472389	A	G	3429.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr8	69217174	rs2692030	T	A	4035.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr8	69243745	rs2676639	C	T	1183.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:121,60:0.33:181
chr8	69351982	rs2591004	C	T	1938.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr8	69621334	rs113093505	A	G	275.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.658;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.75;ReadPosRankSum=0.736;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:40,18:0.31:58
chr8	69703245	rs2958318	A	C	535.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:7,20:0.74:27
chr8	70498501	rs2241882	G	A	753.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:26,35:0.57:61
chr8	70505272	rs4737996	A	G	4031.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:142,186:0.57:328
chr8	70513855	rs752040	A	G	4619.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:90,192:0.68:282
chr8	70514116	rs1155965	A	G	597.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:14,21:0.60:35
chr8	70516940	rs4737998	G	T	463.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:16,18:0.53:34
chr8	70516969	rs4737284	G	A	447.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.798;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.45;ReadPosRankSum=-0.134;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:26,27:0.51:53
chr8	70539661	rs5892211	C	CA	430.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:12,26:0.68:38
chr8	70539911	rs4738002	G	A	504.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:8,19:0.70:27
chr8	70540216	rs3802275	C	T	1772.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:40,71:0.64:111
chr8	70554689	rs7814130	A	G	388.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:32,20:0.38:52
chr8	70571313	rs3802278	G	A	2920.77	.	AC=1;AF=0.500;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	0/1:280,150:0.35:430
chr8	70571531	rs6990375	G	A	2203.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:159,109:0.41:268
chr8	70964399	rs10089937	A	G	220.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:45,16:0.26:61
chr8	70967607	rs3750225	T	C	2038.77	.	AC=1;AF=0.500;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:208,113:0.35:321
chr8	70967727	rs3750226	T	C	311.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:39,15:0.28:54
chr8	71037103	.	T	TA	85.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.374;ClippingRankSum=0.000;DP=201;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=0.000;QD=0.49;ReadPosRankSum=0.969;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:143,31:0.18:174
chr8	71071695	rs2272670	C	T	1493.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr8	71075146	rs10641831	A	ATTT	585.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.445;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.89;ReadPosRankSum=-1.087;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:1,20:0.95:21
chr8	71082718	rs2958370	A	G	1341.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr8	71129120	rs71558586	A	AAC	890.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr8	71486568	rs268566	G	C	2963.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr8	71495308	rs145198874	GAC	G	1199.73	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:30,33:0.52:63
chr8	71495847	rs61065292	A	G	2133.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:38,82:0.68:120
chr8	71499109	rs61412217	T	C	1359.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:37,61:0.62:98
chr8	71506634	rs3816745	G	C	75.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.329;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.72;MQRankSum=1.556;QD=5.05;ReadPosRankSum=-0.677;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:10,5:0.33:15
chr8	71510093	rs268626	A	G	4175.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr8	71512349	rs268592	A	T	1213.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:140,70:0.33:210
chr8	71550058	rs268571	G	C	1112.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr8	71550144	rs35571096	A	G	908.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:38,43:0.53:81
chr8	71550895	rs11399242	C	CT	105.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.324;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=2.643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.81;ReadPosRankSum=-1.272;SOR=0.156;set=HC	GT:AD:AF:DP	0/1:13,9:0.41:22
chr8	71550904	rs376185421	T	TA	184.73	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:9,12:0.57:21
chr8	71573259	rs35863913	C	T	375.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:43,21:0.33:64
chr8	71574251	rs17760050	A	T	2096.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr8	71593425	rs6991329	G	A	4867.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr8	71593663	rs71560435	CTTA	C	262.73	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:12,8:0.40:20
chr8	72137261	rs13262002	G	C	231.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:31,13:0.30:44
chr8	72181862	rs2053664	C	T	1681.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr8	72211834	rs3779747	A	C	1570.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr8	72914638	rs12544348	G	A	921.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:132,56:0.30:188
chr8	72935045	rs10086177	G	C	1236.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:17,45:0.73:62
chr8	72935944	rs959975	T	C	407.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:3,15:0.83:18
chr8	72942210	rs3824151	G	T	13520.77	.	AC=2;AF=1.00;AN=2;DB;DP=524;set=Intersection	GT:AD:AF:DP	1/1:2,520:1.00:522
chr8	72948588	rs13280644	C	T	641.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.162;ClippingRankSum=0.000;DB;DP=217;ExcessHet=3.0103;FS=2.030;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.03;ReadPosRankSum=0.284;SOR=0.866;set=HC	GT:AD:AF:DP	0/1:164,48:0.23:212
chr8	72958691	rs11349767	TA	T	107.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.729;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.49;ReadPosRankSum=0.983;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:12,12:0.50:24
chr8	72959383	rs143973551	A	G	620.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.983;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.22;ReadPosRankSum=-0.764;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:51,35:0.41:86
chr8	72959535	rs13255063	T	A	558.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:72,33:0.31:105
chr8	72962985	rs2120474	G	A	1384.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr8	72963109	rs35427625	G	A	482.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:51,29:0.36:80
chr8	72963135	rs1025927	A	G	400.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:45,23:0.34:68
chr8	72963258	rs1025928	T	C	401.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr8	72963296	rs1025929	A	G	108.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:4,5:0.56:9
chr8	72965973	rs3735942	G	A	724.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:30,37:0.55:67
chr8	72966002	rs3735943	G	A	1066.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:32,51:0.61:83
chr8	72966124	rs3735944	A	G	561.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:13,26:0.67:39
chr8	72971502	rs12541199	T	C	127.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.242;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=15.97;ReadPosRankSum=0.144;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chr8	72971505	rs12541200	T	G	127.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=15.97;ReadPosRankSum=0.144;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chr8	72971527	rs12548486	C	T	98.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:4,5:0.56:9
chr8	72971570	rs9298198	C	T	238.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.119;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.92;ReadPosRankSum=2.024;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:9,7:0.44:16
chr8	72971579	rs28736596	A	C	268.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.330;ClippingRankSum=-0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=15.81;ReadPosRankSum=0.452;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:9,8:0.47:17
chr8	72975619	rs34929058	GA	G	954.73	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:33,63:0.66:96
chr8	72975801	rs7819749	T	G	1943.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:40,85:0.68:125
chr8	72981327	rs1811457	A	G	4188.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:101,189:0.65:290
chr8	72981584	rs1373297	C	T	269.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:9,11:0.55:20
chr8	72987369	rs2278654	C	T	1969.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:83,93:0.53:176
chr8	73142726	rs58254809	CA	C	3473.73	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:57,117:0.67:174
chr8	73850203	rs11782118	G	A	5849.77	.	AC=1;AF=0.500;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	0/1:163,261:0.62:424
chr8	73921534	rs113373855	G	GGAGGTCGGGAGA	1836.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;MQ=60.22;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr8	73926236	rs2975841	T	G	852.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.84;SOR=0.880;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr8	73982161	rs2291219	A	G	4048.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr8	73983988	rs3830249	TAA	T	7743.73	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr8	73983994	rs114487364	A	T	3524.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:9,177:0.95:186
chr8	73993200	rs10087744	T	G	3607.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr8	74005131	rs59331088	A	G	4857.77	.	AC=1;AF=0.500;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	0/1:153,222:0.59:375
chr8	74203576	rs4394387	G	A	267.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:39,15:0.28:54
chr8	74204653	rs2070764	A	T	1432.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:188,86:0.31:274
chr8	74332207	rs6998213	A	G	598.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:75,33:0.31:108
chr8	74440125	rs143916422	T	TCAGGAAAATTCAAATAATTTA	7630.73	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr8	74463089	rs3088139	T	G	1869.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.959;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=3.053;MLEAC=2;MLEAF=1.000;MQ=60.25;MQRankSum=-9.055;QD=22.26;ReadPosRankSum=-1.426;SOR=0.115;set=HC	GT:AD:AF:DP	1/1:2,82:0.98:84
chr8	74463797	rs10112019	T	C	2762.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr8	74473951	rs12546339	C	T	3121.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:101,138:0.58:239
chr8	74527996	rs949493	C	T	2726.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr8	74581290	rs11419133	A	AG	16495.73	.	AC=2;AF=1.00;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	1/1:0,410:1.00:410
chr8	74717707	rs12680411	C	A	101.90	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.38;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr8	74744721	rs7842946	T	C	1802.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr8	74859123	rs55903314	T	G	2431.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:64,111:0.63:175
chr8	74867927	rs72661848	C	G	263.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:9,12:0.57:21
chr8	74868374	rs72661849	G	A	1744.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:49,77:0.61:126
chr8	74888494	rs2306486	C	T	2217.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:63,102:0.62:165
chr8	74890927	rs112765233	C	CA	52.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.403;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.05;ReadPosRankSum=0.552;SOR=0.515;set=HC	GT:AD:AF:DP	0/1:38,12:0.24:50
chr8	74890961	rs62509309	A	G	1305.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:32,54:0.63:86
chr8	74893880	rs7108	C	T	822.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:12,32:0.73:44
chr8	74917084	rs6472812	A	G	4915.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr8	74917228	rs11466001	A	G	455.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:9,18:0.67:27
chr8	75262798	rs7828201	G	C	10053.77	.	AC=2;AF=1.00;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	1/1:0,371:1.00:371
chr8	75262841	rs4321999	G	A	7286.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr8	75273933	rs55894757	A	G	150.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.293;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=1.472;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.90;ReadPosRankSum=0.255;SOR=0.342;set=HC	GT:AD:AF:DP	0/1:40,12:0.23:52
chr8	75274141	rs11554166	T	G	4259.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.739;ClippingRankSum=0.000;DB;DP=322;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.23;ReadPosRankSum=-0.517;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:121,201:0.62:322
chr8	75274190	rs148508128	A	G	2215.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.208;ClippingRankSum=0.000;DB;DP=331;ExcessHet=3.0103;FS=0.411;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.69;ReadPosRankSum=1.319;SOR=0.742;set=HC	GT:AD:AF:DP	0/1:206,125:0.38:331
chr8	75274331	rs3832592	CAT	C	513.73	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:35,16:0.31:51
chr8	75275312	rs4463412	C	T	2003.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr8	75525173	rs112838021	A	G	2913.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:70,129:0.65:199
chr8	75614614	rs269198	C	A	919.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:96,50:0.34:146
chr8	76452313	rs2943549	G	A	4963.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr8	76452421	rs2943551	G	A	756.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr8	76459726	rs1800922	G	A	929.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr8	76463571	rs2272668	T	C	812.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:79,43:0.35:122
chr8	76465522	rs1800924	T	G	864.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr8	76465570	rs62515061	T	C	261.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:6,11:0.65:17
chr8	76468077	rs16939097	A	G	86.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr8	76468139	rs2941468	C	G	334.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr8	76468282	rs1805098	G	A	770.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr8	76468309	rs61003427	GTT	G	534.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:3,19:0.86:22
chr8	76472485	rs2941472	G	A	1768.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr8	76472560	rs2941473	A	T	6120.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr8	76476396	rs1805100	G	A	5831.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr8	76476457	rs2272669	G	A	2041.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr8	77694336	.	ATT	A	342.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.119;ClippingRankSum=0.000;DP=58;ExcessHet=3.0103;FS=8.039;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.99;ReadPosRankSum=1.280;SOR=0.120;set=HC	GT:AD:AF:DP	0/1:26,23:0.47:49
chr8	77776848	rs3830275	TA	T	851.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.63;QD=20.28;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr8	77879257	rs7000529	T	C	1146.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr8	77895865	rs10087163	A	G	13419.77	.	AC=2;AF=1.00;AN=2;DB;DP=518;set=Intersection	GT:AD:AF:DP	1/1:0,514:1.00:514
chr8	77896472	rs10957830	C	A	1518.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:49,63:0.56:112
chr8	77912230	rs12718	G	T	2818.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:68,126:0.65:194
chr8	77912249	.	C	A	938.77	.	AC=1;AF=0.500;AN=2;DP=143;set=Intersection	GT:AD:AF:DP	0/1:95,48:0.34:143
chr8	79073301	rs62510328	A	G	2313.77	.	AC=1;AF=0.500;AN=2;DB;DP=506;set=Intersection	GT:AD:AF:DP	0/1:349,151:0.30:500
chr8	79591017	rs28429528	G	C	468.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:8,18:0.69:26
chr8	79598666	rs142222654	GTTTA	G	8559.73	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:10,201:0.95:211
chr8	79601420	rs1872072	T	C	301.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:8,14:0.64:22
chr8	79609647	rs35904168	G	A	1679.77	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:241,101:0.30:342
chr8	79609917	rs370060109	CT	C	97.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.369;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=2.182;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=-1.559;QD=3.62;ReadPosRankSum=-2.357;SOR=1.483;set=HC	GT:AD:AF:DP	0/1:15,12:0.44:27
chr8	79610710	rs1054283	A	G	3191.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:133,150:0.53:283
chr8	79629738	rs5892663	C	CA	593.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.617;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.621;QD=5.82;ReadPosRankSum=0.185;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:54,48:0.47:102
chr8	79652134	rs11777205	G	A	453.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:28,23:0.45:51
chr8	80523667	rs35479042	G	C	84.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.110;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.53;ReadPosRankSum=-0.671;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:17,7:0.29:24
chr8	80553512	rs13269060	G	A	782.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:56,34:0.38:90
chr8	80575954	rs13266097	T	A	33.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:19,4:0.17:23
chr8	80576923	rs375568053	C	CCTCT	430.73	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:26,13:0.33:39
chr8	80576942	rs34059899	T	C	354.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:35,19:0.35:54
chr8	80577224	rs71756967	T	TA	84.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.484;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=2.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.21;ReadPosRankSum=-1.260;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:55,15:0.21:70
chr8	80678300	rs11448857	C	CA	1224.73	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:51,60:0.54:111
chr8	80965039	rs3824267	T	A	3922.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr8	80965070	rs3780010	C	A	2095.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.82;SOR=2.670;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr8	80965739	rs2303446	C	T	1406.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr8	81083598	rs201086010	AAAGCCCGAGTCC	A	6814.73	.	AC=1;AF=0.500;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	0/1:178,188:0.51:366
chr8	81399047	rs144692080	TGTC	T	831.73	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:42,24:0.36:66
chr8	81426293	rs147305104	T	TA	537.73	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:25,19:0.43:44
chr8	81553804	rs60295176	GA	G	336.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.754;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=0.937;QD=5.10;ReadPosRankSum=1.053;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:30,36:0.55:66
chr8	81605251	rs145491398	C	T	1836.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:53,84:0.61:137
chr8	81892766	rs2241972	G	A	2500.77	.	AC=1;AF=0.500;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	0/1:217,138:0.39:355
chr8	81905294	rs895270	G	A	1622.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:185,95:0.34:280
chr8	81905314	rs2016459	A	C	2026.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:208,114:0.35:322
chr8	81905397	rs2016465	A	G	1432.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:204,86:0.30:290
chr8	81905533	rs895267	G	A	365.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:26,15:0.37:41
chr8	82355518	rs6990882	A	G	327.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:19,15:0.44:34
chr8	82355621	rs6473276	A	G	1105.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:52,54:0.51:106
chr8	82355713	rs72684442	C	G	1298.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.308;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.65;ReadPosRankSum=-1.464;SOR=0.618;set=HC	GT:AD:AF:DP	0/1:46,37:0.45:83
chr8	82355719	rs140076606	T	C	1312.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.148;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.82;ReadPosRankSum=-0.921;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:46,37:0.45:83
chr8	82357112	rs2229015	T	C	2956.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:86,134:0.61:220
chr8	82583151	rs142569405	T	C	2615.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:50,118:0.70:168
chr8	82590822	rs2932222	C	G	55.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:6,4:0.40:10
chr8	82590861	rs2991004	G	A	70.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:8,4:0.33:12
chr8	82606782	rs2955006	A	G	2751.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:51,118:0.70:169
chr8	82627395	rs58900840	A	C	1421.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:117,68:0.37:185
chr8	82629447	rs62512330	G	A	691.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:79,40:0.34:119
chr8	82633452	rs2130263	C	G	713.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:71,40:0.36:111
chr8	82644831	rs201750959	C	A	444.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:14,20:0.59:34
chr8	82713832	rs33964984	C	CA	380.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.976;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=2.155;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=-0.846;QD=4.33;ReadPosRankSum=1.591;SOR=0.547;set=HC	GT:AD:AF:DP	0/1:54,34:0.39:88
chr8	82713930	rs61516400	A	AGAGT	1511.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;MQ=60.62;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr8	82727515	rs2635482	C	T	2360.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.079;ClippingRankSum=0.000;DB;DP=220;ExcessHet=3.0103;FS=2.581;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.78;ReadPosRankSum=-0.311;SOR=0.886;set=HC	GT:AD:AF:DP	0/1:151,68:0.31:219
chr8	82727520	rs2600606	A	T	2446.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.254;ClippingRankSum=0.000;DB;DP=228;ExcessHet=3.0103;FS=2.512;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.78;ReadPosRankSum=-0.770;SOR=0.890;set=HC	GT:AD:AF:DP	0/1:155,72:0.32:227
chr8	82727569	rs16909651	T	C	1962.77	.	AC=1;AF=0.500;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	0/1:256,116:0.31:372
chr8	82741576	rs34550849	C	CA	136.73	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:22,7:0.24:29
chr8	82751822	rs1814534	T	G	364.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:21,15:0.42:36
chr8	82752291	rs12056632	A	G	913.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:96,52:0.35:148
chr8	85441856	rs13248532	T	A	1274.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:1,42:0.98:43
chr8	85716963	rs11784597	C	A	386.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr8	86021994	rs62525422	G	A	1466.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:95,75:0.44:170
chr8	86042370	rs11312968	AT	A	216.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.701;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=0.000;QD=6.37;ReadPosRankSum=0.417;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:10,24:0.71:34
chr8	86048000	rs36102162	AT	A	1327.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.459;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=2.784;MLEAC=2;MLEAF=1.000;MQ=60.52;MQRankSum=0.577;QD=17.02;ReadPosRankSum=1.616;SOR=1.939;set=HC	GT:AD:AF:DP	1/1:5,73:0.94:78
chr8	86057707	rs62525428	A	G	547.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:43,31:0.42:74
chr8	86057767	rs111675718	A	G	267.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:37,18:0.33:55
chr8	86089787	rs12926	C	G	1267.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr8	86114525	rs3217409	T	TTTA	1106.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr8	86121311	rs3808538	G	T	1911.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr8	86126827	rs112611553	C	CAACATT	5018.73	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr8	86134784	rs12550160	C	A	1493.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr8	86135096	rs2132589	A	G	2809.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr8	86135132	rs1021583	A	G	1738.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr8	86158217	rs34150174	TTAAAC	T	3680.73	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr8	86158249	rs17740658	C	T	1459.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr8	86161990	rs62527224	A	G	718.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:55,34:0.38:89
chr8	86163230	.	CTT	C	1820.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.455;ClippingRankSum=0.000;DP=187;ExcessHet=3.0103;FS=4.134;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=0.469;QD=17.02;ReadPosRankSum=-1.355;SOR=2.726;set=HC	GT:AD:AF:DP	1/1:29,78:0.73:107
chr8	86163287	rs111772479	G	A	334.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:47,18:0.28:65
chr8	86171786	rs4739698	T	C	2970.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr8	86171816	rs4739699	A	G	2492.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr8	86180719	rs75353219	A	G	986.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.498;ClippingRankSum=0.000;DB;DP=237;ExcessHet=3.0103;FS=3.373;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.24;ReadPosRankSum=0.703;SOR=0.967;set=HC	GT:AD:AF:DP	0/1:167,66:0.28:233
chr8	86180906	.	CTT	C,CT	796.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.692;ClippingRankSum=0.000;DP=100;ExcessHet=3.0103;FS=1.528;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=11.55;ReadPosRankSum=1.953;SOR=1.162;set=HC	GT:AD:AF:DP	1/2:11,27,31:0.39,0.45:69
chr8	86180944	rs2006767	A	G	1468.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr8	86244914	rs1995058	G	A	167.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:5,9:0.64:14
chr8	86250709	rs4740049	T	C	6643.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:2,236:0.99:238
chr8	86253707	rs142346369	T	TA	156.73	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:15,9:0.38:24
chr8	86253982	rs1496532	C	T	1370.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:34,62:0.65:96
chr8	86254062	rs1496531	T	A	237.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:10,10:0.50:20
chr8	86351997	rs20571	G	A	2049.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:51,94:0.65:145
chr8	86360458	rs11340759	TC	T	1272.73	.	AC=1;AF=0.500;AN=2;DB;DP=68;MQ=60.32;set=Intersection	GT:AD:AF:DP	0/1:25,41:0.62:66
chr8	86388228	rs2307075	A	C	1205.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:19,46:0.71:65
chr8	86389195	rs11780942	C	T	608.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:15,24:0.62:39
chr8	86389403	rs703	T	C	5536.77	.	AC=1;AF=0.500;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	0/1:129,242:0.65:371
chr8	87076150	rs981711	C	G	1178.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:33,54:0.62:87
chr8	87111368	rs11382900	G	GA	271.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.667;ClippingRankSum=0.000;DB;DP=231;ExcessHet=3.0103;FS=1.454;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=4.224;QD=1.35;ReadPosRankSum=-0.533;SOR=0.563;set=HC	GT:AD:AF:DP	0/1:159,42:0.21:201
chr8	87126151	rs17602780	G	A	4457.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:115,199:0.63:314
chr8	87126178	rs17660682	G	C	3369.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:79,141:0.64:220
chr8	87151606	rs2466326	G	C	264.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:27,13:0.33:40
chr8	87155037	rs17603897	G	A	283.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:6,13:0.68:19
chr8	87155094	rs1483779	T	C	568.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.882;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.34;ReadPosRankSum=0.475;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:28,27:0.49:55
chr8	87155225	rs75594898	C	T	701.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.538;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=2.170;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.89;ReadPosRankSum=-0.130;SOR=1.002;set=HC	GT:AD:AF:DP	0/1:24,35:0.59:59
chr8	87165011	rs10504820	T	C	1491.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:99,72:0.42:171
chr8	87226700	rs9656982	A	G	692.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.204;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=5.212;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.50;ReadPosRankSum=-1.084;SOR=1.160;set=HC	GT:AD:AF:DP	0/1:150,48:0.24:198
chr8	87226963	rs76235312	C	G	1275.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:29,48:0.62:77
chr8	87229948	rs4621787	T	A	513.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:115,34:0.23:149
chr8	87235150	rs2976190	C	T	7185.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr8	87235273	rs2976189	C	T	4738.77	.	AC=1;AF=0.500;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	0/1:115,215:0.65:330
chr8	87241715	rs2954347	A	G	1206.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:22,47:0.68:69
chr8	87241797	rs11413051	A	AT	1352.73	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:157,84:0.35:241
chr8	87241847	rs7814198	G	A	2988.77	.	AC=1;AF=0.500;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	0/1:256,160:0.38:416
chr8	87242141	.	A	T	4964.77	.	AC=1;AF=0.500;AN=2;DP=356;set=Intersection	GT:AD:AF:DP	0/1:132,217:0.62:349
chr8	87440101	.	CT	C	108.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.132;ClippingRankSum=0.000;DP=198;ExcessHet=3.0103;FS=1.809;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=2.839;QD=0.71;ReadPosRankSum=0.938;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:121,32:0.21:153
chr8	87452766	rs4961191	A	G	1002.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.10;SOR=1.121;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr8	87453030	rs10092164	A	G	728.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.99;SOR=1.528;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr8	87455070	rs71275852	TAA	TA,T	458.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=47;set=Intersection	GT:AF:DP	1/1:0.86:37
chr8	87470141	rs148927503	AT	A	1398.73	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:82,52:0.39:134
chr8	87474085	rs7460650	A	G	1011.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:21,46:0.69:67
chr8	87480890	rs7017706	C	T	3545.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:136,164:0.55:300
chr8	87482324	rs6471352	C	T	1013.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr8	87484669	rs13282351	C	T	3309.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:136,156:0.53:292
chr8	87489562	rs66648775	AAC	A	1369.73	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:28,44:0.61:72
chr8	87497176	rs11539113	G	A	1147.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:45,54:0.55:99
chr8	87507366	rs7837569	C	T	232.18	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:2,11:0.85:13
chr8	87517679	rs34596274	C	T	3144.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:31,87:0.74:118
chr8	87517700	rs35592191	C	G	2729.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:21,70:0.77:91
chr8	87519315	rs6980476	T	G	2121.77	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:208,117:0.36:325
chr8	87520894	rs68008113	C	A	1544.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:36,68:0.65:104
chr8	87520948	.	C	CCCGCCTCCTGCACAGCACCTCTT	788.73	.	AC=1;AF=0.500;AN=2;DP=54;set=Intersection	GT:AD:AF:DP	0/1:5,20:0.80:25
chr8	87540872	rs10956871	G	A	1114.73	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:76,53:0.41:129
chr8	87543280	rs72690455	C	T	593.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:53,27:0.34:80
chr8	87544832	rs72690457	A	G	694.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:72,41:0.36:113
chr8	87552426	rs16915389	T	C	232.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.877;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=5.444;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.64;ReadPosRankSum=0.224;SOR=0.467;set=HC	GT:AD:AF:DP	0/1:45,19:0.30:64
chr8	87559879	rs3217490	GT	G	259.73	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:11,15:0.58:26
chr8	87560151	rs10094332	T	C	164.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr8	87567031	rs2304790	G	A	816.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:97,45:0.32:142
chr8	87567305	rs3816240	A	C	550.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:33,28:0.46:61
chr8	87568644	rs2304787	T	G	863.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:105,46:0.30:151
chr8	87570665	rs1062850	A	C	3543.77	.	AC=1;AF=0.500;AN=2;DB;DP=494;set=Intersection	GT:AD:AF:DP	0/1:307,185:0.38:492
chr8	87570728	rs1062851	C	T	1842.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:159,90:0.36:249
chr8	87581682	rs10660354	T	TCA	4172.73	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr8	87581723	rs71275866	CAT	C	1173.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.254;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=3.756;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.52;ReadPosRankSum=1.708;SOR=1.670;set=HC	GT:AD:AF:DP	0/1:16,30:0.65:46
chr8	87588198	rs3735972	T	C	2473.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:60,105:0.64:165
chr8	87588248	rs3735970	T	C	1538.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:34,65:0.66:99
chr8	87588519	rs974279	T	C	600.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr8	87644924	rs67463707	C	T	466.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.075;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=2.817;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.67;ReadPosRankSum=1.165;SOR=1.118;set=HC	GT:AD:AF:DP	0/1:17,23:0.57:40
chr8	87645159	rs3735969	A	G	128.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr8	87645199	rs34307542	T	A	104.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr8	87660100	rs13265557	T	C	1959.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:68,93:0.58:161
chr8	87666251	rs4961206	T	G	886.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.298;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=5.029;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.37;ReadPosRankSum=-2.890;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:113,52:0.32:165
chr8	87679098	rs3735967	G	A	101.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:18,6:0.25:24
chr8	87679303	rs6471482	A	C	4321.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:1,159:0.99:160
chr8	87679463	rs3735966	T	C	467.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:11,19:0.63:30
chr8	87680112	rs7815125	T	A	2695.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr8	87683465	rs1441242	C	T	331.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr8	87751848	.	G	GT	152.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.980;ClippingRankSum=0.000;DP=87;ExcessHet=3.0103;FS=5.066;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.429;QD=2.06;ReadPosRankSum=-1.843;SOR=1.347;set=HC	GT:AD:AF:DP	0/1:50,24:0.32:74
chr8	87899871	rs66493340	T	G	1950.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:43,85:0.66:128
chr8	87899960	rs67958512	A	G	744.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:25,35:0.58:60
chr8	87917236	rs10504828	T	G	1063.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr8	87951714	rs4644279	A	C	298.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr8	88218202	.	AT	A	189.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.300;ClippingRankSum=0.000;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.87;ReadPosRankSum=0.457;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:42,24:0.36:66
chr8	88622043	rs9694259	T	G	1418.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:45,68:0.60:113
chr8	88624391	.	CTT	C	125.86	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.98;ReadPosRankSum=0.282;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:1,8:0.89:9
chr8	89068596	rs2616495	C	T	170.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:22,10:0.31:32
chr8	89081541	rs2664347	A	T	395.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:24,17:0.41:41
chr8	89081730	rs2616490	T	C	2031.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:157,107:0.41:264
chr8	89339993	rs35847859	GCACA	G	699.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.470;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=6.962;MLEAC=1;MLEAF=0.500;MQ=61.18;MQRankSum=-1.240;QD=10.93;ReadPosRankSum=5.119;SOR=0.169;set=HC	GT:AD:AF:DP	0/1:43,21:0.33:64
chr8	90770609	rs39499	A	G	1485.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr8	90777510	rs431264	G	A	3245.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr8	90781953	rs40377	C	T	3258.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr8	90784979	rs2230801	T	C	7812.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr8	90792127	rs39506	A	C	763.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:1,29:0.97:30
chr8	90921778	rs201460887	C	CT	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.986;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=2.820;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=2.764;QD=0.62;ReadPosRankSum=1.505;SOR=0.346;set=HC	GT:AD:AF:DP	0/1:49,12:0.20:61
chr8	90948273	rs2735384	C	T	2082.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.50;SOR=0.867;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr8	90948315	.	C	CTT	129.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.726;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.21;ReadPosRankSum=0.178;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:3,15:0.83:18
chr8	90955358	rs7840099	C	T	783.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:78,42:0.35:120
chr8	90955624	rs3736639	T	A	709.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:58,35:0.38:93
chr8	90958422	rs1061302	T	C	557.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:53,30:0.36:83
chr8	90958530	rs2308962	T	C	874.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:61,48:0.44:109
chr8	90967711	rs709816	A	G	683.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:82,41:0.33:123
chr8	90967862	rs1805786	G	T	82.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr8	90970862	rs1805818	G	T	615.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:33,28:0.46:61
chr8	90970935	rs2234744	G	A	1599.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:119,83:0.41:202
chr8	90990479	rs1805794	C	G	604.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:95,37:0.28:132
chr8	90995019	rs1063045	C	T	2519.77	.	AC=1;AF=0.500;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	0/1:286,143:0.33:429
chr8	91017745	rs1805806	T	C	326.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:37,15:0.29:52
chr8	91064036	rs1476590	G	C	1587.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:146,83:0.36:229
chr8	91094086	rs7815279	A	C	887.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:22,35:0.61:57
chr8	91094983	rs3087750	G	A	917.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:26,37:0.59:63
chr8	91929652	rs34544744	GA	G	202.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.068;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=3.662;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.540;QD=2.03;ReadPosRankSum=-0.022;SOR=1.286;set=HC	GT:AD:AF:DP	0/1:73,27:0.27:100
chr8	91992746	rs2740774	C	T	1246.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr8	92021036	rs2054805	C	T	2574.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr8	92082753	rs3808378	C	T	1081.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr8	92083230	rs28429767	C	T	1379.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr8	92083424	rs11557571	A	G	12642.77	.	AC=2;AF=1.00;AN=2;DB;DP=474;set=Intersection	GT:AD:AF:DP	1/1:4,469:0.99:473
chr8	92083592	rs5893159	CT	C	340.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.464;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=2.321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.11;ReadPosRankSum=-2.108;SOR=1.688;set=HC	GT:AD:AF:DP	0/1:11,31:0.74:42
chr8	92090573	rs11786324	G	C	3309.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr8	92130316	rs55762572	A	G	5110.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr8	92136728	rs11785003	C	T	1864.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr8	92139254	rs12544236	T	C	1923.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr8	92148072	.	T	TA	32.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282;ClippingRankSum=-0.000;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.46;ReadPosRankSum=1.150;SOR=0.132;set=HC	GT:AD:AF:DP	0/1:3,3:0.50:6
chr8	92201844	rs201088145	G	A	2657.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:73,121:0.62:194
chr8	92212787	rs142835228	T	C	719.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:59,35:0.37:94
chr8	92231354	.	A	C	644.77	.	AC=1;AF=0.500;AN=2;DP=76;set=Intersection	GT:AD:AF:DP	0/1:47,29:0.38:76
chr8	92301249	rs4734009	G	A	2236.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr8	92307978	rs10107822	C	T	1805.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr8	92352887	rs7012287	C	T	2593.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr8	93088151	rs13252280	C	T	5709.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr8	93328993	rs138085384	CGAA	C	469.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.662;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.70;ReadPosRankSum=-0.784;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:23,14:0.38:37
chr8	93904087	rs3780016	T	C	628.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr8	94715965	rs6997642	C	G	1446.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr8	94740320	rs77899597	CA	C	986.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr8	94746698	rs3133974	G	T	10184.77	.	AC=2;AF=1.00;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	1/1:0,370:1.00:370
chr8	94794620	rs3097427	C	T	1693.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr8	94800261	rs376142937	CT	C	148.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.224;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=4.142;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.650;QD=2.16;ReadPosRankSum=0.125;SOR=0.188;set=HC	GT:AD:AF:DP	0/1:47,22:0.32:69
chr8	94808165	rs3134031	A	G	10669.77	.	AC=2;AF=1.00;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	1/1:0,399:1.00:399
chr8	94928208	rs4236818	A	C	4511.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:1,159:0.99:160
chr8	94935937	rs4735258	T	C	1676.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr8	95143172	rs1051624	T	G	9575.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr8	95143186	rs1051623	C	G	9094.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr8	95158146	rs13263145	G	C	1866.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:158,96:0.38:254
chr8	95158259	rs2251734	G	A	4677.77	.	AC=1;AF=0.500;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	0/1:140,211:0.60:351
chr8	95158382	rs1131830	C	T	835.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:97,47:0.33:144
chr8	95182801	rs72670354	G	T	6450.77	.	AC=1;AF=0.500;AN=2;DB;DP=546;set=Intersection	GT:AD:AF:DP	0/1:237,307:0.56:544
chr8	95186295	rs2514813	T	C	1583.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:52,66:0.56:118
chr8	95186382	rs3214050	G	A	1625.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:46,71:0.61:117
chr8	95186510	rs34016273	GA	G	68.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.536;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=1.391;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.64;ReadPosRankSum=-0.923;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:30,12:0.29:42
chr8	95188850	rs2243518	T	C	2482.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:65,111:0.63:176
chr8	95206799	rs56129387	G	T	1939.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:43,87:0.67:130
chr8	95272605	rs2170363	G	C	2514.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:92,121:0.57:213
chr8	95479680	rs28910279	G	C	4997.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:122,224:0.65:346
chr8	95504224	rs3098725	G	A	806.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:21,32:0.60:53
chr8	95507237	rs112365062	A	AT	1281.73	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:55,91:0.62:146
chr8	95508721	rs2289455	C	T	7321.77	.	AC=1;AF=0.500;AN=2;DB;DP=573;set=Intersection	GT:AD:AF:DP	0/1:219,342:0.61:561
chr8	95511785	rs56372696	T	C	545.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:17,22:0.56:39
chr8	95518960	rs113892534	G	GA	832.73	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:52,52:0.50:104
chr8	95521853	rs147073742	TACACACAC	T	6238.73	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:86,170:0.66:256
chr8	95524126	rs35725183	TTAAA	T	1023.73	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:27,29:0.52:56
chr8	95524209	rs3099412	C	T	2537.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:84,116:0.58:200
chr8	95530000	rs12375388	A	T	1201.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:34,49:0.59:83
chr8	95531419	rs1866844	T	C	9014.77	.	AC=1;AF=0.500;AN=2;DB;DP=608;set=Intersection	GT:AD:AF:DP	0/1:201,394:0.66:595
chr8	95538468	rs2890827	T	C	3303.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:83,154:0.65:237
chr8	95541371	rs957446	T	A	5503.77	.	AC=1;AF=0.500;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	0/1:144,250:0.63:394
chr8	95541663	rs3098719	T	A	400.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:7,17:0.71:24
chr8	95549547	rs2304765	A	T	122.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:8,6:0.43:14
chr8	95550357	rs1866845	A	T	1336.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:37,50:0.57:87
chr8	95550474	rs1866846	T	C	5184.77	.	AC=1;AF=0.500;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	0/1:135,237:0.64:372
chr8	95559092	rs3133651	T	C	10668.77	.	AC=1;AF=0.500;AN=2;DB;DP=783;set=Intersection	GT:AD:AF:DP	0/1:302,471:0.61:773
chr8	95559310	rs140437008	T	C	3175.77	.	AC=1;AF=0.500;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	0/1:258,156:0.38:414
chr8	95565538	rs3133658	G	C	4264.77	.	AC=1;AF=0.500;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:117,199:0.63:316
chr8	95565762	rs3133659	A	C	710.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:20,32:0.62:52
chr8	95651239	rs7824334	T	G	11921.77	.	AC=2;AF=1.00;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	1/1:0,439:1.00:439
chr8	95651303	rs12679585	G	A	2951.77	.	AC=1;AF=0.500;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	0/1:248,155:0.38:403
chr8	95651573	rs13268847	C	G	1481.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:206,87:0.30:293
chr8	95651590	rs5893292	C	CT	6645.73	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:75,166:0.69:241
chr8	95651599	rs2162237	A	C	6361.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:69,158:0.70:227
chr8	95654043	rs62523409	C	T	278.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:15,12:0.44:27
chr8	95655415	rs2303451	T	A	252.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:31,14:0.31:45
chr8	95655596	rs72676907	T	C	2903.77	.	AC=1;AF=0.500;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	0/1:227,154:0.40:381
chr8	95658287	rs149099719	A	AT	385.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr8	95658526	rs60139063	T	C	4754.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.13;QD=27.81;SOR=1.088;set=HC	GT:AD:AF:DP	1/1:0,171:1.00:171
chr8	95658562	rs57602858	A	AAAAT	4560.73	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr8	95673674	rs6471455	A	C	1042.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr8	95673945	rs7820441	A	G	185.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:15,9:0.38:24
chr8	95674432	rs2303453	G	C	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.842;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.29;ReadPosRankSum=0.126;SOR=0.991;set=HC	GT:AD:AF:DP	0/1:3,3:0.50:6
chr8	95674823	rs11404889	G	GT	244.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.439;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=6.822;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.62;ReadPosRankSum=-1.107;SOR=0.185;set=HC	GT:AD:AF:DP	0/1:32,21:0.40:53
chr8	95676785	rs17717009	G	A	1055.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:34,40:0.54:74
chr8	95676894	rs17644352	C	G	5695.77	.	AC=1;AF=0.500;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	0/1:176,251:0.59:427
chr8	95677132	rs1426171	T	C	3332.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr8	95680229	rs1549466	C	T	1259.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:189,73:0.28:262
chr8	95686850	rs17717431	A	G	592.78	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:1,19:0.95:20
chr8	95690579	rs12677519	T	C	8237.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr8	95718131	rs61112381	CTTTT	C	908.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.150;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=1.288;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=1.139;QD=16.52;ReadPosRankSum=0.565;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:22,33:0.60:55
chr8	95718314	rs11785	T	C	308.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:11,12:0.52:23
chr8	95732283	rs13267007	G	C	759.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:29,35:0.55:64
chr8	95738717	rs7816645	A	G	339.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:13,17:0.57:30
chr8	95746833	rs7815731	C	G	843.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:20,33:0.62:53
chr8	95750546	rs201512830	CA	C	44.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.018;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=6.415;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.94;ReadPosRankSum=0.067;SOR=2.093;set=HC	GT:AD:AF:DP	0/1:14,9:0.39:23
chr8	95750744	.	C	CT	32.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.250;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.21;ReadPosRankSum=-1.517;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:19,8:0.30:27
chr8	95777578	.	AT	A	79.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.15;ReadPosRankSum=-0.508;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:24,13:0.35:37
chr8	95793284	rs36116205	A	AT	333.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.668;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=1.102;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=1.196;QD=5.21;ReadPosRankSum=-2.027;SOR=0.910;set=HC	GT:AD:AF:DP	0/1:34,30:0.47:64
chr8	95793515	rs4398879	G	A	791.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr8	95796177	rs4236830	T	A	411.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr8	95800325	rs4428644	T	A	577.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.639;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=5.699;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.26;ReadPosRankSum=1.195;SOR=2.400;set=HC	GT:AD:AF:DP	0/1:4,26:0.87:30
chr8	95853708	rs11996455	G	A	5426.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr8	95853907	rs13271375	A	G	1685.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr8	95853948	rs13271644	A	G	890.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr8	95877787	rs713113	T	C	11977.77	.	AC=2;AF=1.00;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	1/1:0,441:1.00:441
chr8	95886551	rs10956928	A	G	1475.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.52;SOR=3.171;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr8	95888307	rs1129152	C	T	1103.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr8	95902819	rs139407777	ATT	A	2264.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.067;ClippingRankSum=0.000;DB;DP=221;ExcessHet=3.0103;FS=5.999;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.10;ReadPosRankSum=2.577;SOR=1.355;set=HC	GT:AD:AF:DP	0/1:44,106:0.71:150
chr8	95902823	.	T	A	1333.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.573;ClippingRankSum=0.000;DP=220;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.89;ReadPosRankSum=1.987;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:57,93:0.62:150
chr8	95902824	.	T	A	54.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.578;ClippingRankSum=0.000;DP=220;ExcessHet=3.0103;FS=0.832;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.34;ReadPosRankSum=0.826;SOR=0.515;set=HC	GT:AD:AF:DP	0/1:133,29:0.18:162
chr8	95902825	.	T	A	784.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.100;ClippingRankSum=0.000;DP=220;ExcessHet=3.0103;FS=1.329;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.90;ReadPosRankSum=3.216;SOR=0.550;set=HC	GT:AD:AF:DP	0/1:90,70:0.44:160
chr8	95906492	.	AAAAGCCGC	A	2253.73	.	AC=1;AF=0.500;AN=2;DP=93;set=Intersection	GT:AD:AF:DP	0/1:30,57:0.66:87
chr8	95906554	rs2466431	C	G	1033.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr8	95951807	rs2013597	G	A	644.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr8	95951916	rs5893310	GTGAC	G	2413.73	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr8	95952477	rs2956210	A	G	4747.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:3,180:0.98:183
chr8	96037319	rs201223057	G	C	554.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:39,27:0.41:66
chr8	96046094	rs2678823	G	A	3901.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr8	96047806	rs34960210	T	TA	1321.73	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:27,79:0.75:106
chr8	96053782	rs79118993	GCT	G	1765.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr8	96054000	rs7818382	C	T	221.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr8	96070181	rs2678832	T	C	2016.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr8	96085317	rs4641029	C	T	330.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr8	96259941	rs143748636	T	C	1026.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.591;ClippingRankSum=0.000;DB;DP=200;ExcessHet=3.0103;FS=1.899;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.19;ReadPosRankSum=-1.705;SOR=0.841;set=HC	GT:AD:AF:DP	0/1:134,64:0.32:198
chr8	96260054	.	T	TA	140.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.489;ClippingRankSum=-0.000;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.28;ReadPosRankSum=1.001;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:10,7:0.41:17
chr8	97172403	rs2466129	A	G	861.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:20,34:0.63:54
chr8	97243720	rs2292835	G	A	4271.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:116,193:0.62:309
chr8	97246978	rs2643339	C	A	619.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:11,26:0.70:37
chr8	97256341	rs6993518	T	A	399.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:12,16:0.57:28
chr8	97257982	rs871798	T	C	1366.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:26,52:0.67:78
chr8	97258719	rs1878638	C	T	883.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:23,41:0.64:64
chr8	97270991	rs2319603	G	A	1312.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:19,50:0.72:69
chr8	97296205	.	G	GA	39.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.546;ClippingRankSum=0.000;DP=74;ExcessHet=3.0103;FS=1.488;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.58;ReadPosRankSum=1.801;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:54,15:0.22:69
chr8	97321898	rs961075	T	A	1095.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:43,50:0.54:93
chr8	97332661	rs3735987	A	G	4746.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr8	97342582	rs7001397	C	T	4175.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr8	97343276	rs141163428	G	T	1448.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:47,69:0.59:116
chr8	97343326	rs3830537	ATCTTGT	A	4881.73	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:1,113:0.99:114
chr8	97345590	rs3735986	A	G	1253.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr8	97384315	rs2319815	A	T	2194.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr8	97384408	rs2244423	C	T	6078.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr8	97384625	rs34027129	A	AG	567.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr8	97398106	.	TTCTCTC	T,TTC	18219.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.251;ClippingRankSum=0.000;DP=529;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.15;MQRankSum=0.216;QD=39.27;ReadPosRankSum=-2.247;SOR=1.171;set=HC	GT:AD:AF:DP	1/2:3,81,380:0.17,0.82:464
chr8	97398724	rs62516307	T	C	9256.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	1/1:4,340:0.99:344
chr8	97506373	rs880938	C	G	994.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr8	97614661	rs1042381	T	A	3736.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:157,176:0.53:333
chr8	97847358	rs1864384	G	T	2668.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr8	98289986	rs28669903	C	T	10235.77	.	AC=2;AF=1.00;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	1/1:0,379:1.00:379
chr8	98787739	rs2002451	C	T	505.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:45,26:0.37:71
chr8	98787752	rs112936102	CA	C	181.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.614;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=11.710;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=0.000;QD=1.87;ReadPosRankSum=0.091;SOR=2.426;set=HC	GT:AD:AF:DP	0/1:63,34:0.35:97
chr8	98787994	rs2449510	A	G	4898.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr8	98788033	rs2449509	G	C	3501.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr8	98788165	.	C	CGGCGGGCTCCAGGCGA	1831.73	.	AC=1;AF=0.500;AN=2;DP=134;set=Intersection	GT:AD:AF:DP	0/1:81,43:0.35:124
chr8	98788261	rs2449508	G	T	3452.77	.	AC=1;AF=0.500;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	0/1:188,161:0.46:349
chr8	98817552	rs57251463	C	CTT	342.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.107;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.32;MQRankSum=0.000;QD=10.39;ReadPosRankSum=1.216;SOR=0.963;set=HC	GT:AD:AF:DP	0/1:10,23:0.70:33
chr8	98943545	rs2290471	A	G	5200.77	.	AC=1;AF=0.500;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	0/1:130,233:0.64:363
chr8	98943598	rs2290472	C	T	4434.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:112,195:0.64:307
chr8	98954012	rs2513845	T	C	7318.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr8	98954272	rs3018906	T	A	2081.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:47,87:0.65:134
chr8	98991221	rs1869609	A	G	12209.77	.	AC=2;AF=1.00;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	1/1:2,453:1.00:455
chr8	99016092	rs10955143	A	G	930.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:52,39:0.43:91
chr8	99019930	rs11775531	G	A	208.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:20,10:0.33:30
chr8	99030280	rs2248014	T	C	8201.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr8	99030320	rs35120814	G	A	3274.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:83,148:0.64:231
chr8	99033328	rs6987112	A	G	396.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:43,19:0.31:62
chr8	99044528	rs2255317	C	T	2579.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:59,115:0.66:174
chr8	99045978	rs2255464	A	C	972.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:16,38:0.70:54
chr8	99046376	rs35312215	G	GT	3536.73	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:125,176:0.58:301
chr8	99046383	.	C	CT	2769.73	.	AC=1;AF=0.500;AN=2;DP=308;set=Intersection	GT:AD:AF:DP	0/1:116,151:0.57:267
chr8	99057526	rs812	G	A	10877.77	.	AC=2;AF=1.00;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	1/1:0,380:1.00:380
chr8	99118622	rs2242197	A	C	1213.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr8	99118654	rs2242196	C	T	655.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr8	99120794	rs77539382	T	TC	1679.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr8	99121035	rs34451943	GC	G	6270.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.838;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.07;MQRankSum=0.177;QD=42.95;ReadPosRankSum=0.969;SOR=1.451;set=HC	GT:AD:AF:DP	1/1:2,144:0.99:146
chr8	99121036	.	CTA	TAG	2937	.	AC=2;AF=1.00;AN=2;BRF=0.44;FR=1.0000;HP=1;HapScore=1;MGOF=14;MMLQ=23;MQ=60.02;NF=25;NR=59;PP=2937;QD=20;SC=AAATTCAATGCTAGAAGACTT;SbPval=0.39;Source=Platypus;TC=96;TCF=26;TCR=70;TR=84;WE=99121046;WS=99121025;set=Platypus	GT:AD:AF:DP	1/1:12,84:0.88:96
chr8	99121038	rs34397714	A	AG	6270.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.971;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.07;MQRankSum=0.179;QD=44.16;ReadPosRankSum=1.082;SOR=1.431;set=HC	GT:AD:AF:DP	1/1:2,140:0.99:142
chr8	99121075	rs35654897	TAA	T	1438.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.182;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=3.136;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=0.000;QD=22.84;ReadPosRankSum=0.768;SOR=2.030;set=HC	GT:AD:AF:DP	1/1:10,53:0.84:63
chr8	99140544	rs2447508	G	A	1715.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr8	99149189	rs182805220	G	A	3073.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:81,137:0.63:218
chr8	99162634	rs7000738	T	C	417.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:50,23:0.32:73
chr8	99162888	rs4735530	A	G	695.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:74,41:0.36:115
chr8	99205111	rs3735885	T	C	4030.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr8	99205612	rs3735887	C	T	9253.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:0,347:1.00:347
chr8	99208065	rs13264255	T	C	1427.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr8	99208190	rs3779721	A	C	841.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:21,39:0.65:60
chr8	99224534	rs1542289	C	A	388.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:8,17:0.68:25
chr8	100133706	rs7460625	T	G	2986.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:1,103:0.99:104
chr8	100287517	rs11332378	CT	C	692.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.030;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=3.869;MLEAC=1;MLEAF=0.500;MQ=60.34;MQRankSum=0.840;QD=10.82;ReadPosRankSum=-0.355;SOR=1.855;set=HC	GT:AD:AF:DP	0/1:10,54:0.84:64
chr8	100287579	rs7840337	G	C	639.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr8	100861146	rs34513504	G	A	990.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:90,52:0.37:142
chr8	100865836	rs6468694	G	A	2028.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:201,108:0.35:309
chr8	100871751	rs10710929	CT	C	475.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.941;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=1.895;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=1.859;QD=4.49;ReadPosRankSum=-0.728;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:59,47:0.44:106
chr8	100899793	rs1130569	G	A	947.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:79,52:0.40:131
chr8	100904277	rs1130474	T	C	664.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:104,36:0.26:140
chr8	100975002	rs6468700	A	G	4991.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr8	100990177	rs7841915	A	G	1459.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.388;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=0.732;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.80;ReadPosRankSum=0.020;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:44,70:0.61:114
chr8	100994389	rs6468704	C	T	428.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:11,18:0.62:29
chr8	100999575	rs12545059	A	T	371.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:11,15:0.58:26
chr8	100999637	rs28758904	G	A	755.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:37,36:0.49:73
chr8	101020548	rs3101322	C	G	1779.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:41,68:0.62:109
chr8	101051024	rs930965	C	A	1754.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:58,77:0.57:135
chr8	101053980	rs922207	C	T	4536.77	.	AC=1;AF=0.500;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	0/1:125,205:0.62:330
chr8	101059662	rs2980542	G	A	6360.77	.	AC=1;AF=0.500;AN=2;DB;DP=504;set=Intersection	GT:AD:AF:DP	0/1:190,302:0.61:492
chr8	101137836	rs199817972	GAAAC	G	1480.73	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:27,41:0.60:68
chr8	101196077	.	GAATAT	G	442.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DP=19;ExcessHet=3.0103;FS=3.757;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.30;ReadPosRankSum=0.453;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:8,11:0.58:19
chr8	101196078	.	AA	GT	952	.	AC=1;AF=0.500;AN=2;BRF=0.4;FR=0.5000;HP=1;HapScore=2;MGOF=2;MMLQ=28;MQ=60.0;NF=6;NR=0;PP=952;QD=167.577979144;SC=CATATTTTTGAATATGTATCC;SbPval=1.0;Source=Platypus;TC=14;TCF=14;TCR=0;TR=6;WE=101196100;WS=101196068;set=Platypus	GT:AD:AF:DP	0/1:8,6:0.43:14
chr8	101196080	.	TATGTATCCAAAGG	T	2962	.	AC=1;AF=0.500;AN=2;BRF=0.4;FR=0.5000;HP=3;HapScore=2;MGOF=2;MMLQ=28;MQ=60.93;NF=6;NR=0;PP=2962;QD=20;SC=TATTTTTGAATATGTATCCAA;SbPval=1.0;Source=Platypus;TC=16;TCF=12;TCR=4;TR=6;WE=101196100;WS=101196068;set=Platypus	GT:AD:AF:DP	0/1:10,6:0.38:16
chr8	101196084	.	TA	T	442.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.854;ClippingRankSum=0.000;DP=20;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.14;ReadPosRankSum=0.193;SOR=2.448;set=HC	GT:AD:AF:DP	0/1:8,12:0.60:20
chr8	101196086	rs200516221	TCCAAAGG	T	437.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=4.164;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=7.104;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.90;ReadPosRankSum=-0.039;SOR=2.985;set=HC	GT:AD:AF:DP	0/1:10,12:0.55:22
chr8	101225708	rs1660352	C	A	583.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:49,29:0.37:78
chr8	101225838	rs2514682	C	G	437.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:7,18:0.72:25
chr8	101232701	rs2919471	T	C	1047.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:83,50:0.38:133
chr8	101252680	rs6511	T	C	1270.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:93,63:0.40:156
chr8	101253092	.	G	GT	172.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.018;ClippingRankSum=0.000;DP=154;ExcessHet=3.0103;FS=11.310;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.34;ReadPosRankSum=-0.924;SOR=1.848;set=HC	GT:AD:AF:DP	0/1:100,29:0.22:129
chr8	101253184	rs1788190	G	A	1449.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:167,80:0.32:247
chr8	101280911	rs34297750	TAA	T	355.37	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.774;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=2.098;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=0.793;QD=9.11;ReadPosRankSum=1.802;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:19,20:0.51:39
chr8	101281238	rs7014862	C	A	1716.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:36,75:0.68:111
chr8	101281271	rs1660324	C	T	985.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:15,41:0.73:56
chr8	101395141	rs113252572	T	TAA	290.75	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr8	101522891	.	TA	T	182.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.217;ClippingRankSum=0.000;DP=140;ExcessHet=3.0103;FS=2.739;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.45;ReadPosRankSum=0.128;SOR=0.920;set=HC	GT:AD:AF:DP	0/1:94,32:0.25:126
chr8	101534808	.	T	G	3367.77	.	AC=1;AF=0.500;AN=2;DP=258;set=Intersection	GT:AD:AF:DP	0/1:101,150:0.60:251
chr8	101540233	.	TA	T	316.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.462;ClippingRankSum=0.000;DP=149;ExcessHet=3.0103;FS=1.145;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.043;QD=3.77;ReadPosRankSum=0.627;SOR=0.583;set=HC	GT:AD:AF:DP	0/1:41,43:0.51:84
chr8	101542205	rs2469652	G	T	428.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:23,19:0.45:42
chr8	101586133	rs2022923	T	C	847.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:112,48:0.30:160
chr8	101608919	rs2248609	T	C	1069.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:107,63:0.37:170
chr8	101620541	rs2469668	T	G	1038.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:15,39:0.72:54
chr8	101625479	rs1078186	C	T	1988.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr8	101629995	rs11321116	CT	C	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.626;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.94;ReadPosRankSum=1.807;SOR=0.852;set=HC	GT:AD:AF:DP	0/1:29,11:0.28:40
chr8	101661603	rs7016136	T	G	1425.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:164,80:0.33:244
chr8	101661634	rs12681977	C	T	1285.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:120,68:0.36:188
chr8	101718932	rs62513920	C	G	238.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.323;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=12.658;MLEAC=1;MLEAF=0.500;MQ=56.78;MQRankSum=-4.953;QD=2.44;ReadPosRankSum=-0.445;SOR=2.332;set=HC	GT:AD:AF:DP	0/1:78,20:0.20:98
chr8	101718965	rs62513921	G	A	647.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.769;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=16.985;MLEAC=1;MLEAF=0.500;MQ=57.91;MQRankSum=-5.642;QD=4.05;ReadPosRankSum=2.730;SOR=2.461;set=HC	GT:AD:AF:DP	0/1:134,26:0.16:160
chr8	101718968	rs62513922	C	T	644.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.862;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=14.649;MLEAC=1;MLEAF=0.500;MQ=57.96;MQRankSum=-5.744;QD=3.91;ReadPosRankSum=2.888;SOR=2.360;set=HC	GT:AD:AF:DP	0/1:139,26:0.16:165
chr8	101718987	rs62513923	G	A	64.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.092;ClippingRankSum=0.000;DB;DP=224;ExcessHet=3.0103;FS=16.498;MLEAC=1;MLEAF=0.500;MQ=58.27;MQRankSum=-5.382;QD=0.32;ReadPosRankSum=1.558;SOR=2.394;set=HC	GT:AD:AF:DP	0/1:175,26:0.13:201
chr8	101719004	rs62513924	G	A	49.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.350;ClippingRankSum=0.000;DB;DP=255;ExcessHet=3.0103;FS=8.456;MLEAC=1;MLEAF=0.500;MQ=58.28;MQRankSum=-7.173;QD=0.21;ReadPosRankSum=-2.767;SOR=1.525;set=HC	GT:AD:AF:DP	0/1:203,29:0.12:232
chr8	101721705	rs201017624	G	T	184.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.577;ClippingRankSum=0.000;DB;DP=476;ExcessHet=3.0103;FS=2.277;MLEAC=1;MLEAF=0.500;MQ=59.46;MQRankSum=-19.352;QD=0.39;ReadPosRankSum=-7.688;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:438,36:0.08:474
chr8	101721709	rs146200489	T	A	334.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.600;ClippingRankSum=0.000;DB;DP=496;ExcessHet=3.0103;FS=2.134;MLEAC=1;MLEAF=0.500;MQ=59.39;MQRankSum=-18.443;QD=0.68;ReadPosRankSum=-8.131;SOR=0.538;set=HC	GT:AD:AF:DP	0/1:449,45:0.09:494
chr8	101721727	rs139094790	G	A	676.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.595;ClippingRankSum=0.000;DB;DP=595;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.27;MQRankSum=-16.910;QD=1.14;ReadPosRankSum=-7.397;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:500,93:0.16:593
chr8	101721756	rs57799615	A	C	1542.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.688;ClippingRankSum=0.000;DB;DP=653;ExcessHet=3.0103;FS=0.648;MLEAC=1;MLEAF=0.500;MQ=58.77;MQRankSum=-19.397;QD=2.37;ReadPosRankSum=1.364;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:519,132:0.20:651
chr8	101721812	rs200409148	G	A	4606.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.852;ClippingRankSum=0.000;DB;DP=642;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.84;MQRankSum=-13.929;QD=7.21;ReadPosRankSum=2.142;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:491,148:0.23:639
chr8	101721817	rs201076736	T	C	4571.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.418;ClippingRankSum=0.000;DB;DP=636;ExcessHet=3.0103;FS=0.627;MLEAC=1;MLEAF=0.500;MQ=56.67;MQRankSum=-12.842;QD=7.22;ReadPosRankSum=0.974;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:487,146:0.23:633
chr8	101721839	rs202074479	C	A	1033.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.839;ClippingRankSum=0.000;DB;DP=592;ExcessHet=3.0103;FS=0.703;MLEAC=1;MLEAF=0.500;MQ=56.95;MQRankSum=-10.558;QD=1.76;ReadPosRankSum=0.112;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:483,106:0.18:589
chr8	101721870	rs146609644	G	A	87.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.565;ClippingRankSum=0.000;DB;DP=541;ExcessHet=3.0103;FS=2.984;MLEAC=1;MLEAF=0.500;MQ=56.81;MQRankSum=-12.343;QD=0.16;ReadPosRankSum=-1.241;SOR=1.012;set=HC	GT:AD:AF:DP	0/1:475,64:0.12:539
chr8	101722092	rs1693557	T	C	67.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.585;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.42;ReadPosRankSum=0.953;SOR=0.061;set=HC	GT:AD:AF:DP	0/1:23,5:0.18:28
chr8	101937370	rs964919	A	T	671.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr8	102504974	rs515622	C	G	7694.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr8	102555060	rs470801	G	A	490.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:59,29:0.33:88
chr8	102555893	rs111642558	G	A	2156.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:45,91:0.67:136
chr8	102701456	rs375965103	CA	C	271.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.718;ClippingRankSum=0.000;DB;DP=335;ExcessHet=3.0103;FS=2.072;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=2.680;QD=0.93;ReadPosRankSum=-0.076;SOR=0.533;set=HC	GT:AD:AF:DP	0/1:217,74:0.25:291
chr8	103137693	rs487571	T	C	2277.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr8	103137842	rs34763968	TA	T	77.86	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:1,7:0.88:8
chr8	103220351	rs1265117	A	G	2154.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr8	103282518	rs2978431	A	G	88.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.390;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.07;ReadPosRankSum=-1.691;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:6,5:0.45:11
chr8	103283313	rs3018508	C	T	1714.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.350;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=9.177;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.80;ReadPosRankSum=1.709;SOR=0.321;set=HC	GT:AD:AF:DP	0/1:89,86:0.49:175
chr8	103287850	rs367962786	TA	T	127.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.647;ClippingRankSum=0.000;DB;DP=223;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.61;ReadPosRankSum=0.732;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:166,42:0.20:208
chr8	103297699	rs192992707	A	G	1463.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:25,50:0.67:75
chr8	103301832	rs112458193	G	C	3059.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:71,140:0.66:211
chr8	103339881	rs2445948	A	C	843.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:106,50:0.32:156
chr8	103372743	rs6468823	G	A	464.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr8	103541502	rs66648401	A	G	2809.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr8	103572992	rs3018444	C	G	24018.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.090;ClippingRankSum=0.000;DB;DP=848;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.73;ReadPosRankSum=2.176;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:244,592:0.71:836
chr8	103573001	rs3018445	C	G	26153.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.821;ClippingRankSum=0.000;DB;DP=888;ExcessHet=3.0103;FS=0.578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.82;ReadPosRankSum=0.908;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:244,633:0.72:877
chr8	103573006	rs2916569	G	A	26160.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.534;ClippingRankSum=0.000;DB;DP=916;ExcessHet=3.0103;FS=0.583;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.88;ReadPosRankSum=0.676;SOR=0.626;set=HC	GT:AD:AF:DP	0/1:251,655:0.72:906
chr8	103664310	rs36083487	T	TA	918.73	.	AC=1;AF=0.500;AN=2;DB;DP=74;MQ=60.15;set=Intersection	GT:AD:AF:DP	0/1:41,32:0.44:73
chr8	103664698	rs10639139	A	AT	68.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.955;ClippingRankSum=-0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.25;ReadPosRankSum=0.967;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:3,8:0.73:11
chr8	103841709	rs62522600	G	A	2952.77	.	AC=1;AF=0.500;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	0/1:255,156:0.38:411
chr8	103845526	rs2304348	A	C	635.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:57,29:0.34:86
chr8	103846823	rs71303443	A	AAAC	1321.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr8	103850896	rs62522602	T	C	332.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:12,14:0.54:26
chr8	103855691	rs2304344	C	T	1854.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr8	104078420	rs71984986	TGTAAAG	T	926.73	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:18,25:0.58:43
chr8	104081085	rs9992	G	C	4043.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:73,172:0.70:245
chr8	104145625	rs2515189	A	G	890.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:28,36:0.56:64
chr8	104166746	rs57787067	C	T	422.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:11,16:0.59:27
chr8	104166902	rs35605502	G	GC	4413.73	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr8	104195486	rs16870235	G	C	2996.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:86,124:0.59:210
chr8	104210367	rs62528474	A	G	2589.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:105,126:0.55:231
chr8	104312341	rs3736047	A	G	1501.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:146,74:0.34:220
chr8	104319947	rs11312808	GT	G	201.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.807;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=1.380;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.54;ReadPosRankSum=0.027;SOR=1.053;set=HC	GT:AD:AF:DP	0/1:35,22:0.39:57
chr8	104331088	rs3104026	G	C	307.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:18,14:0.44:32
chr8	104337096	rs3808554	A	G	3188.77	.	AC=1;AF=0.500;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	0/1:253,163:0.39:416
chr8	104337367	rs3808553	A	C	4226.77	.	AC=1;AF=0.500;AN=2;DB;DP=605;set=Intersection	GT:AD:AF:DP	0/1:386,214:0.36:600
chr8	104343686	rs1053917	G	A	1656.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:146,87:0.37:233
chr8	104343822	rs2934725	A	G	393.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:54,22:0.29:76
chr8	104390224	rs2687364	T	A	977.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:109,53:0.33:162
chr8	104394744	rs3098233	T	C	1321.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.959;ClippingRankSum=0.000;DB;DP=243;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.46;ReadPosRankSum=-0.786;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:166,76:0.31:242
chr8	104412935	rs2241778	C	T	1140.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:33,47:0.59:80
chr8	104414338	rs117399628	T	C	1101.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:18,49:0.73:67
chr8	104415637	.	TAAA	T	153.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.819;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=1.657;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=1.003;QD=5.91;ReadPosRankSum=-1.512;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:12,14:0.54:26
chr8	104417045	rs17803441	C	T	1393.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:54,67:0.55:121
chr8	104420109	rs138160805	T	C	943.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:29,36:0.55:65
chr8	104426904	rs10709873	CA	C	1755.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.564;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.82;ReadPosRankSum=1.912;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:28,40:0.59:68
chr8	104426905	.	AAC	A	2336	.	AC=1;AF=0.500;AN=2;BRF=0.35;FR=0.5000;HP=1;HapScore=4;MGOF=3;MMLQ=28;MQ=60.0;NF=19;NR=5;PP=2336;QD=99.4283453015;SC=CGCGGACAGCAACGCTCCCTT;SbPval=0.67;Source=Platypus;TC=47;TCF=36;TCR=11;TR=24;WE=104426918;WS=104426900;set=Platypus	GT:AD:AF:DP	0/1:23,24:0.51:47
chr8	104426907	rs367610017	CG	C	1783.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.376;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.17;ReadPosRankSum=0.802;SOR=0.831;set=HC	GT:AD:AF:DP	0/1:32,45:0.58:77
chr8	104426908	.	GCT	CCC	2333	.	AC=1;AF=0.500;AN=2;BRF=0.35;FR=0.5000;HP=2;HapScore=4;MGOF=3;MMLQ=28;MQ=60.0;NF=26;NR=5;PP=2333;QD=76.982834673;SC=GGACAGCAACGCTCCCTTCAA;SbPval=0.8;Source=Platypus;TC=64;TCF=50;TCR=14;TR=31;WE=104426918;WS=104426900;set=Platypus	GT:AD:AF:DP	0/1:33,31:0.48:64
chr8	104426910	rs114156661	T	C	1795.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.672;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.02;ReadPosRankSum=0.015;SOR=0.862;set=HC	GT:AD:AF:DP	0/1:32,46:0.59:78
chr8	104427359	rs3134295	A	C	7032.77	.	AC=1;AF=0.500;AN=2;DB;DP=577;set=Intersection	GT:AD:AF:DP	0/1:254,312:0.55:566
chr8	104427578	rs3134297	T	C	7285.77	.	AC=1;AF=0.500;AN=2;DB;DP=506;set=Intersection	GT:AD:AF:DP	0/1:180,317:0.64:497
chr8	104432545	rs3134253	A	G	3447.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:99,157:0.61:256
chr8	104432631	rs3098238	T	C	2495.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:97,115:0.54:212
chr8	104439486	.	GT	G	401.73	.	AC=1;AF=0.500;AN=2;DP=106;set=Intersection	GT:AD:AF:DP	0/1:56,32:0.36:88
chr8	104442666	rs7816297	G	A	331.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:3,12:0.80:15
chr8	104445009	rs1370005	T	G	813.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:10,36:0.78:46
chr8	104452554	rs36073721	A	ATAT	851.73	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:11,22:0.67:33
chr8	104454009	rs59392618	C	CT	235.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.092;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=8.345;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.29;ReadPosRankSum=-0.537;SOR=0.061;set=HC	GT:AD:AF:DP	0/1:34,21:0.38:55
chr8	104454794	rs3098214	A	C	63.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.150;ClippingRankSum=-0.000;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=15.95;ReadPosRankSum=-0.319;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr8	104664392	rs117441931	C	T	938.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:32,40:0.56:72
chr8	104709594	rs1176674	A	G	1963.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr8	104892734	rs76209418	A	G	172.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:27,10:0.27:37
chr8	104922519	rs112118632	C	CT	485.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.376;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.445;QD=3.24;ReadPosRankSum=1.386;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:94,56:0.37:150
chr8	104934028	rs6468897	G	A	1824.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:170,95:0.36:265
chr8	105160955	rs188924401	C	T	3767.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:126,165:0.57:291
chr8	105236109	.	C	T	1294.77	.	AC=1;AF=0.500;AN=2;DP=92;set=Intersection	GT:AD:AF:DP	0/1:32,57:0.64:89
chr8	105261119	.	T	TTCTCTCTCTCTCTCTC	642.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.218;ClippingRankSum=0.000;DP=53;ExcessHet=3.0103;FS=8.280;MLEAC=1;MLEAF=0.500;MQ=62.60;MQRankSum=3.387;QD=21.42;ReadPosRankSum=2.826;SOR=2.799;set=HC	GT:AD:AF:DP	0/1:10,20:0.67:30
chr8	105261161	rs60010021	A	ATT	116.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.262;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.43;MQRankSum=-0.000;QD=12.97;ReadPosRankSum=-1.180;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:5,4:0.44:9
chr8	105261175	rs2340767	A	T	179.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.051;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.98;ReadPosRankSum=-1.443;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:5,7:0.58:12
chr8	105261946	rs1447063	C	G	408.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:7,16:0.70:23
chr8	105263248	rs1374519	C	T	3867.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:147,178:0.55:325
chr8	105263751	rs2252152	T	A	691.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr8	105263979	rs10461	C	T	1523.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:217,90:0.29:307
chr8	105264087	rs34085789	C	CAA	1379.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.060;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.43;ReadPosRankSum=1.498;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:11,73:0.87:84
chr8	105393687	rs2253336	G	A	818.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr8	105436526	.	A	G	5218.77	.	AC=1;AF=0.500;AN=2;DP=377;set=Intersection	GT:AD:AF:DP	0/1:130,236:0.64:366
chr8	105440462	rs2246815	A	G	2144.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr8	105459793	rs7821992	C	A	1320.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr8	105463690	rs2669429	A	G	1863.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr8	105478933	rs2298840	G	A	2318.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:82,101:0.55:183
chr8	105479149	rs2959023	A	G	1549.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.860;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=0.738;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.35;ReadPosRankSum=-0.245;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:42,66:0.61:108
chr8	105503818	rs201824078	T	TAA	688.80	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.249;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=2.561;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=0.429;QD=16.02;ReadPosRankSum=-1.524;SOR=0.239;set=HC	GT:AD:AF:DP	0/1:9,34:0.79:43
chr8	105601195	.	CCGA	C	2980.73	.	AC=1;AF=0.500;ALERT;AN=2;DP=220;set=Intersection	GT:AD:AF:DP	0/1:72,80:0.53:152
chr8	105601198	.	A	ACGCCGACGCCGCCGC	1479.73	.	AC=1;AF=0.500;ALERT;AN=2;DP=215;set=Intersection	GT:AD:AF:DP	0/1:131,47:0.26:178
chr8	105845531	.	CTT	C	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.790;ClippingRankSum=-0.000;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.44;ReadPosRankSum=-0.417;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:9,4:0.31:13
chr8	105845706	rs145596017	T	TTTTTTTTC	2015.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr8	105845742	rs1380689	G	A	122.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:25,9:0.26:34
chr8	105845812	.	C	T	22	.	AC=1;AF=0.500;AN=2;BRF=0.47;FR=0.5000;HP=3;HapScore=2;MGOF=35;MMLQ=28;MQ=60.6;NF=1;NR=3;PP=22;QD=14.1928031368;SC=GGATTACAGGCGTGAGCCACG;SbPval=0.37;Source=Platypus;TC=9;TCF=1;TCR=8;TR=4;WE=105845820;WS=105845802;set=Platypus	GT:AD:AF:DP	0/1:5,4:0.44:9
chr8	105907461	rs2290865	G	T	296.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:23,15:0.39:38
chr8	105907786	rs3214884	GT	G	1632.73	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:87,58:0.40:145
chr8	105907833	rs2290866	C	T	504.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:42,22:0.34:64
chr8	106003701	rs16872136	A	G	526.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:75,33:0.31:108
chr8	106003949	rs16872138	A	G	1069.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:61,52:0.46:113
chr8	106331094	.	G	GGCGGCGGGA	911.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.457;ClippingRankSum=0.000;DP=55;ExcessHet=3.0103;FS=1.094;MLEAC=1;MLEAF=0.500;MQ=61.56;MQRankSum=3.406;QD=18.61;ReadPosRankSum=3.393;SOR=0.869;set=HC	GT:AD:AF:DP	0/1:27,22:0.45:49
chr8	106573578	rs3735953	C	T	5017.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr8	106814656	rs2920048	G	C	2888.77	.	AC=1;AF=0.500;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	0/1:289,152:0.34:441
chr8	107277717	rs2938306	G	A	400.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:33,20:0.38:53
chr8	107371924	rs2022982	C	A	1903.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:121,93:0.43:214
chr8	107630536	rs3134136	C	T	573.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:11,23:0.68:34
chr8	107670141	rs2282510	G	A	777.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:30,38:0.56:68
chr8	107705048	rs148616522	G	A	2097.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:95,97:0.51:192
chr8	107754473	rs1681904	G	A	2244.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;MQ=59.95;set=Intersection	GT:AD:AF:DP	0/1:206,121:0.37:327
chr8	107754583	rs1784468	T	G	5641.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr8	107782335	rs11996457	G	A	3783.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:88,170:0.66:258
chr8	107782395	rs11996466	G	A	2080.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:52,95:0.65:147
chr8	108315277	rs4472483	T	G	332.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:4,13:0.76:17
chr8	108315599	rs149628829	C	CA	91.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.250;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.34;MQRankSum=1.294;QD=3.67;ReadPosRankSum=0.802;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:15,10:0.40:25
chr8	108335042	rs7009753	C	T	1438.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.353;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.99;ReadPosRankSum=-1.994;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:24,66:0.73:90
chr8	108970264	rs3039298	T	TCA	12536.73	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr8	108970367	rs601558	A	G	15099.77	.	AC=2;AF=1.00;AN=2;DB;DP=591;set=Intersection	GT:AD:AF:DP	1/1:2,579:1.00:581
chr8	109245991	rs612744	G	A	579.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:17,27:0.61:44
chr8	109246032	rs587340	C	A	239.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.166;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=1.674;MLEAC=1;MLEAF=0.500;MQ=60.45;MQRankSum=-0.917;QD=9.99;ReadPosRankSum=-0.635;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:12,12:0.50:24
chr8	109252471	rs16877534	C	T	42.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.638;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.28;ReadPosRankSum=0.742;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:7,3:0.30:10
chr8	109254262	rs615233	C	T	409.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:27,18:0.40:45
chr8	109254677	rs627392	C	T	1170.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:106,59:0.36:165
chr8	109260776	rs4735053	A	G	6457.77	.	AC=1;AF=0.500;AN=2;DB;DP=1089;set=Intersection	GT:AD:AF:DP	0/1:719,365:0.34:1084
chr8	109455802	rs3737501	G	A	746.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:147,51:0.26:198
chr8	109455863	rs3737502	C	T	1533.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:192,93:0.33:285
chr8	109462791	rs4540386	A	G	425.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:25,21:0.46:46
chr8	109465432	.	A	AT	72.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.006;ClippingRankSum=0.000;DP=197;ExcessHet=3.0103;FS=1.731;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=2.096;QD=0.44;ReadPosRankSum=2.501;SOR=0.478;set=HC	GT:AD:AF:DP	0/1:137,28:0.17:165
chr8	109468230	rs10646253	T	TAGAA	376.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:16,11:0.41:27
chr8	109488937	rs1871685	A	G	349.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:26,16:0.38:42
chr8	109491399	rs2252767	A	T	337.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:16,16:0.50:32
chr8	109498656	rs10111934	T	G	225.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:9,9:0.50:18
chr8	109498717	rs34429579	C	CT	599.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.546;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.95;ReadPosRankSum=-1.607;SOR=1.148;set=HC	GT:AD:AF:DP	1/1:8,35:0.81:43
chr8	110255596	rs2980587	T	A	387.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.832;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.79;ReadPosRankSum=0.575;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:47,20:0.30:67
chr8	110293184	rs3830706	TA	T	300.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.444;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=1.627;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=1.234;QD=5.37;ReadPosRankSum=-0.210;SOR=1.195;set=HC	GT:AD:AF:DP	0/1:33,23:0.41:56
chr8	110301944	rs2980616	A	C	659.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.781;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.04;ReadPosRankSum=2.150;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:28,19:0.40:47
chr8	110301951	rs2980617	C	A	757.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.703;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=1.256;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.42;ReadPosRankSum=1.091;SOR=0.951;set=HC	GT:AD:AF:DP	0/1:37,24:0.39:61
chr8	110301998	rs2980618	T	C	1341.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:80,71:0.47:151
chr8	110302047	rs2980619	T	G	2064.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:145,105:0.42:250
chr8	110397738	rs7016085	T	C	2239.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:2,91:0.98:93
chr8	110400698	rs66889268	A	AT	610.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr8	110402491	rs9642806	C	T	174.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr8	110412519	rs1379369	G	A	9482.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:2,347:0.99:349
chr8	110413762	rs964307	T	C	7365.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr8	110413824	rs2061294	C	T	4346.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr8	110416813	rs1457286	C	T	2784.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr8	110418461	rs12679728	G	T	1181.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr8	110420245	rs16879470	T	C	2897.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr8	110420384	rs13254245	T	C	12830.77	.	AC=2;AF=1.00;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	1/1:2,476:1.00:478
chr8	110420429	rs13252234	A	G	10204.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:3,380:0.99:383
chr8	110425594	rs4604408	G	A	505.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr8	110431217	rs7016609	G	T	1140.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr8	110437384	rs4735133	A	G	7276.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:3,285:0.99:288
chr8	110439166	rs13264587	A	G	850.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr8	110439519	rs12544835	G	C	1602.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr8	110455321	rs1673408	C	A	12218.77	.	AC=2;AF=1.00;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	1/1:0,454:1.00:454
chr8	110460488	rs1673407	G	T	11035.77	.	AC=2;AF=1.00;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	1/1:0,413:1.00:413
chr8	110461518	rs1673405	A	G	1899.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr8	110465060	rs1673404	G	C	8281.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr8	110471673	.	AT	A	47	.	AC=1;AF=0.500;AN=2;BRF=0.18;FR=0.5000;HP=7;HapScore=2;MGOF=9;MMLQ=26;MQ=60.0;NF=7;NR=0;PP=47;QD=10.2857142857;SC=AGAATAAAATATTTTTTCTAA;SbPval=1.0;Source=Platypus;TC=8;TCF=8;TCR=0;TR=7;WE=110471681;WS=110471663;set=Platypus	GT:AD:AF:DP	1/0:1,7:0.88:8
chr8	110471796	rs5893958	TA	T	2048.73	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.55;QD=26.27;SOR=3.500;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr8	110473907	rs1026439	T	C	1634.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.22;QD=33.36;SOR=4.047;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr8	110473907	.	TGTGAATCAA	CGTGAATCAA,CGTGAATCAG	905	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.33;FR=0.5000,0.5000;HP=1;HapScore=1;MGOF=27;MMLQ=24;MQ=60.17;NF=43,10;NR=4,1;PP=905,152;QD=19.9951321819;SC=TGAGATCATATGTGAATCAAA;SbPval=0.56;Source=Platypus;TC=47;TCF=43;TCR=4;TR=47,11;WE=110473924;WS=110473897;set=Platypus	GT:AF:DP	0/1:1.00:47
chr8	110473916	rs2124979	A	G	245.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.767;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=-0.512;QD=4.10;ReadPosRankSum=-1.016;SOR=0.437;set=HC	GT:AD:AF:DP	0/1:46,14:0.23:60
chr8	110473965	.	A	AT	1888.73	.	AC=1;AF=0.500;ALERT;AN=2;DP=143;set=Intersection	GT:AD:AF:DP	0/1:41,100:0.71:141
chr8	110473966	rs1026438	A	T	5713.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr8	110476993	rs1673398	A	G	9652.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:0,359:1.00:359
chr8	110489620	rs1783148	A	T	4309.77	.	AC=1;AF=0.500;AN=2;DB;DP=553;set=Intersection	GT:AD:AF:DP	0/1:325,225:0.41:550
chr8	110491840	rs1783147	C	G	630.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:62,33:0.35:95
chr8	110491877	rs1630942	G	A	704.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:70,39:0.36:109
chr8	110491963	rs2061296	CA	TG	1497.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;JOINED;set=Intersection	GT:AD:AF:DP	0/1:65,41:0.39:106
chr8	110492279	rs10441509	G	A	337.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.263;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=1.786;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.04;ReadPosRankSum=-0.401;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:84,27:0.24:111
chr8	110492754	.	C	A	682.77	.	AC=1;AF=0.500;AN=2;DP=169;set=Intersection	GT:AD:AF:DP	0/1:108,49:0.31:157
chr8	110492949	rs1026437	G	C	1723.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:129,87:0.40:216
chr8	110495192	rs2844254	T	A	530.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:78,30:0.28:108
chr8	110504088	rs56235913	CTTT	C	4213.73	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:153,113:0.42:266
chr8	110504218	rs16879659	A	G	2242.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:162,115:0.42:277
chr8	110505866	rs199590450	A	AT	629.73	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:85,44:0.34:129
chr8	110505886	rs2607628	C	T	1029.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:126,61:0.33:187
chr8	110509565	rs77381429	A	T	409.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:32,19:0.37:51
chr8	110516527	rs720139	T	C	223.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:29,13:0.31:42
chr8	110519814	rs1783153	T	C	653.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:23,28:0.55:51
chr8	110522965	rs2607624	T	C	1071.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:135,60:0.31:195
chr8	110527429	rs16879693	C	T	660.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.039;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.50;ReadPosRankSum=2.706;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:104,43:0.29:147
chr8	110527569	rs1783167	A	T	678.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:73,38:0.34:111
chr8	110534512	rs1563578	G	A	1700.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:212,100:0.32:312
chr8	110535444	rs71305955	CTT	C	771.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.815;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=3.704;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.71;ReadPosRankSum=0.409;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:73,42:0.37:115
chr8	110538954	rs1457295	G	T	178.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:32,11:0.26:43
chr8	110539186	rs1783174	G	A	2044.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:153,107:0.41:260
chr8	110542298	rs1617259	C	T	82.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:20,7:0.26:27
chr8	110542337	rs1617350	T	C	454.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.215;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=1.264;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.89;ReadPosRankSum=0.442;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:32,14:0.30:46
chr8	110542343	rs34490230	G	GA	442.73	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:36,14:0.28:50
chr8	110569827	rs2844231	G	A	276.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:27,14:0.34:41
chr8	110570060	rs2844232	A	G	10549.77	.	AC=2;AF=1.00;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	1/1:2,401:1.00:403
chr8	110587969	rs113453782	G	A	2348.77	.	AC=1;AF=0.500;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	0/1:253,127:0.33:380
chr8	110589975	rs112713226	A	C	1010.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:82,54:0.40:136
chr8	110591888	rs112049019	G	A	210.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:14,10:0.42:24
chr8	110592151	rs112294178	A	G	364.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:48,21:0.30:69
chr8	110620037	rs376478633	TCACACACACA	T,TCACACACACACA	1083.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.804;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=1.861;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.29;MQRankSum=0.000;QD=17.77;ReadPosRankSum=-2.210;SOR=1.324;set=HC	GT:AD:AF:DP	1/2:8,26,27:0.43,0.44:61
chr8	110656746	rs59295888	TC	T	10001.73	.	AC=1;AF=0.500;AN=2;DB;DP=570;set=Intersection	GT:AD:AF:DP	0/1:247,318:0.56:565
chr8	110656773	rs11774663	T	C	8834.77	.	AC=1;AF=0.500;AN=2;DB;DP=743;set=Intersection	GT:AD:AF:DP	0/1:315,425:0.57:740
chr8	110657514	rs3108849	G	A	7485.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr8	110703333	rs13266567	A	T	1233.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:34,48:0.59:82
chr8	113240860	rs201835988	GT	G	76.73	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:8,4:0.33:12
chr8	113241088	rs1592624	T	G	509.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:63,28:0.31:91
chr8	113243995	rs10095093	C	A	43.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:18,4:0.18:22
chr8	113254071	.	G	GCA	139.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.052;ClippingRankSum=0.000;DP=60;ExcessHet=3.0103;FS=5.078;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=0.000;QD=2.64;ReadPosRankSum=1.355;SOR=1.638;set=HC	GT:AD:AF:DP	0/1:40,13:0.25:53
chr8	113254073	rs1007815	G	A	580.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.809;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=4.815;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=1.027;QD=10.75;ReadPosRankSum=-1.583;SOR=1.197;set=HC	GT:AD:AF:DP	0/1:35,19:0.35:54
chr8	113254087	rs28698529	G	A	1699.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.22;QD=34.69;SOR=1.007;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr8	113256845	rs28684567	G	T	517.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:64,30:0.32:94
chr8	113256865	rs28369252	G	C	336.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:49,21:0.30:70
chr8	113259132	rs1895014	A	T	322.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:9,12:0.57:21
chr8	113266343	rs7830950	C	T	808.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:68,40:0.37:108
chr8	113267709	rs7006723	A	G	746.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:61,38:0.38:99
chr8	113331211	rs117959936	A	G	1205.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:36,58:0.62:94
chr8	113420495	rs35988509	TG	T	4542.73	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr8	113484935	rs12155677	C	T	4220.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:124,197:0.61:321
chr8	113485014	rs11783041	A	C	556.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.451;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=2.188;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.40;ReadPosRankSum=0.187;SOR=1.043;set=HC	GT:AD:AF:DP	0/1:58,29:0.33:87
chr8	113516209	rs10955625	G	A	538.73	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:76,38:0.33:114
chr8	113585637	rs7014796	A	G	1718.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr8	113655596	rs10505169	A	G	419.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:13,19:0.59:32
chr8	113655643	rs112584207	A	AC	1249.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:27,32:0.54:59
chr8	113655644	rs55980973	A	T	1258.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:27,33:0.55:60
chr8	113655752	rs10505168	T	C	834.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:32,38:0.54:70
chr8	113662299	rs6992564	T	G	620.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:11,22:0.67:33
chr8	113697567	rs7839990	A	G	606.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:15,28:0.65:43
chr8	113842039	rs10106945	G	A	7039.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr8	113842114	rs140103189	GCACACACA	G	729.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=28.07;SOR=4.712;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr8	114111250	rs2030506	G	T	1007.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:70,46:0.40:116
chr8	114186003	rs2219898	T	C	1789.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:203,101:0.33:304
chr8	114388945	rs17609383	G	A	1436.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:168,91:0.35:259
chr8	114448786	rs10682578	C	CCTT	530.73	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:17,14:0.45:31
chr8	114612543	rs4242557	A	C	9097.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	1/1:1,332:1.00:333
chr8	116427395	.	C	A	500.77	.	AC=1;AF=0.500;AN=2;DP=56;set=Intersection	GT:AD:AF:DP	0/1:28,27:0.49:55
chr8	116599199	rs2293889	T	G	1955.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr8	116631278	rs2737218	T	C	2308.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:2,78:0.97:80
chr8	116632409	rs10589819	GAA	G	351.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr8	116635688	rs2737219	G	A	1157.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr8	116635942	rs2721939	C	T	1970.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr8	117782385	rs4514005	C	T	1831.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr8	117791733	rs979866	T	C	16130.77	.	AC=2;AF=1.00;AN=2;DB;DP=603;set=Intersection	GT:AD:AF:DP	1/1:0,597:1.00:597
chr8	117799012	rs1867840	A	G	689.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr8	117861000	rs56668650	T	TA,TAA	672.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-2.915;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=19.79;ReadPosRankSum=0.529;SOR=4.235;set=HC	GT:AD:AF:DP	1/2:1,20,13:0.59,0.38:34
chr8	117861041	rs3020135	T	A	435.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:75,25:0.25:100
chr8	117864952	.	TA	T	305.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.028;ClippingRankSum=0.000;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.37;ReadPosRankSum=-0.452;SOR=0.786;set=HC	GT:AD:AF:DP	0/1:41,29:0.41:70
chr8	117867202	rs2921788	T	C	175.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:16,9:0.36:25
chr8	117874261	rs16888966	C	T	1432.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:133,79:0.37:212
chr8	117875557	rs2921783	C	T	958.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:84,50:0.37:134
chr8	117887121	rs28365847	GC	G,GCCCC	4925.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=531;set=Intersection	GT:AF:DP	1/1:0.89:385
chr8	117887699	rs16889209	A	G	478.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.561;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=5.260;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.56;ReadPosRankSum=-0.685;SOR=0.461;set=HC	GT:AD:AF:DP	0/1:72,33:0.31:105
chr8	118184783	rs13266634	C	T	2405.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:52,102:0.66:154
chr8	118185025	rs3802177	G	A	1529.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:37,63:0.63:100
chr8	118185041	rs2466295	C	T	2089.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr8	118185063	rs2466294	C	G	1350.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr8	118533312	rs11990107	A	G	2371.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:177,124:0.41:301
chr8	118533382	rs7015216	T	A	3107.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr8	118540863	rs72672136	T	C	3440.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:67,161:0.71:228
chr8	118552032	rs140079946	A	G	229.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:10,11:0.52:21
chr8	118552374	rs57267838	CT	C	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.21;ReadPosRankSum=0.716;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:8,5:0.38:13
chr8	118811806	rs71739430	CT	C	204.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.324;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.53;ReadPosRankSum=0.192;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:19,18:0.49:37
chr8	118819578	rs7837891	C	T	3756.77	.	AC=1;AF=0.500;AN=2;DB;DP=483;set=Intersection	GT:AD:AF:DP	0/1:291,189:0.39:480
chr8	118825354	rs4382503	C	T	453.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:21,21:0.50:42
chr8	118830820	rs10955837	T	C	600.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:45,32:0.42:77
chr8	118844039	rs12682457	T	C	641.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:15,24:0.62:39
chr8	118847782	rs11546829	G	A	1154.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:79,61:0.44:140
chr8	119209773	rs2514743	C	T	2065.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:60,91:0.60:151
chr8	119391791	rs5020517	T	C	15297.77	.	AC=2;AF=1.00;AN=2;DB;DP=569;set=Intersection	GT:AD:AF:DP	1/1:0,566:1.00:566
chr8	119451983	rs34337924	ATGT	A	793.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr8	119592901	.	CAT	C	489.73	.	AC=1;AF=0.500;AN=2;DP=27;set=Intersection	GT:AD:AF:DP	0/1:13,14:0.52:27
chr8	119941173	rs3134046	A	G	6098.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr8	119942830	rs6469787	T	C	702.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:9,27:0.75:36
chr8	119964052	rs2073618	G	C	11147.77	.	AC=2;AF=1.00;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	1/1:0,407:1.00:407
chr8	119964283	rs2073617	G	A	1697.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.95;SOR=1.573;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr8	120079748	rs2465383	A	G	2482.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr8	120220775	rs71302978	CG	C	4120.73	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr8	120428758	rs56013326	G	A	2308.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:60,95:0.61:155
chr8	120429024	rs2279112	G	A	9313.77	.	AC=1;AF=0.500;AN=2;DB;DP=623;set=Intersection	GT:AD:AF:DP	0/1:205,411:0.67:616
chr8	120429282	rs7834596	G	T	1841.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:59,83:0.58:142
chr8	120575184	rs1058913	G	A	1747.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:55,78:0.59:133
chr8	120580640	rs2243749	G	T	223.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr8	120581643	rs12544233	G	A	1645.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr8	120583148	rs2305125	G	A	1186.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr8	120583185	rs2305126	T	C	193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.534;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=2.048;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.81;ReadPosRankSum=0.584;SOR=0.260;set=HC	GT:AD:AF:DP	0/1:12,10:0.45:22
chr8	120594802	rs4871364	A	G	3328.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:113,154:0.58:267
chr8	120594958	rs55774238	C	T	240.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:3,9:0.75:12
chr8	120596023	rs10283100	A	G	7323.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr8	120598395	rs72688223	G	A	5457.77	.	AC=1;AF=0.500;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	0/1:155,252:0.62:407
chr8	120599245	rs921044	C	T	940.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:43,46:0.52:89
chr8	120602908	rs935359	C	T	3934.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.71;SOR=1.055;set=HC	GT:AD:AF:DP	1/1:0,88:1.00:88
chr8	120602914	rs935360	C	T	3958.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.48;SOR=1.080;set=HC	GT:AD:AF:DP	1/1:0,89:1.00:89
chr8	120613747	rs2289888	C	T	12215.77	.	AC=2;AF=1.00;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	1/1:2,453:1.00:455
chr8	120613822	rs2289889	C	T	8975.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,326:1.00:326
chr8	120631657	rs5894488	CA	C	882.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.363;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=5.031;MLEAC=1;MLEAF=0.500;MQ=60.73;MQRankSum=1.140;QD=11.77;ReadPosRankSum=-0.680;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:10,65:0.87:75
chr8	120754645	rs4871569	A	G	231.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:6,10:0.62:16
chr8	120803637	rs9297605	C	G	1990.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:64,96:0.60:160
chr8	120805749	rs72688294	T	C	695.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:15,30:0.67:45
chr8	120847188	rs1055130	T	C	1251.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:53,62:0.54:115
chr8	120886054	rs75781905	C	A	1000.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:25,42:0.63:67
chr8	120886370	rs7840728	T	A	766.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:12,28:0.70:40
chr8	120941953	rs7007554	G	T	1513.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:36,57:0.61:93
chr8	121210069	rs2305598	T	C	4271.77	.	AC=1;AF=0.500;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	0/1:151,207:0.58:358
chr8	121210250	rs2305599	C	T	599.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:17,24:0.59:41
chr8	121211847	rs2326483	C	T	3110.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:91,137:0.60:228
chr8	121215991	rs2305600	T	C	1887.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:74,92:0.55:166
chr8	121220395	rs3765062	G	A	757.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:18,33:0.65:51
chr8	121228679	rs4870723	A	C	7317.77	.	AC=1;AF=0.500;AN=2;DB;DP=558;set=Intersection	GT:AD:AF:DP	0/1:212,338:0.61:550
chr8	121240812	rs2305602	G	A	318.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:8,13:0.62:21
chr8	121256150	rs2305603	T	C	4679.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:89,197:0.69:286
chr8	121259862	rs2305605	G	A	3080.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:89,145:0.62:234
chr8	121262775	rs2305607	A	G	682.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:48,34:0.41:82
chr8	121267617	rs993823	C	T	1879.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:72,84:0.54:156
chr8	121267736	rs3750255	A	G	292.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:13,13:0.50:26
chr8	121293142	rs35952226	CT	C	61.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.543;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=6.390;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.732;QD=0.60;ReadPosRankSum=1.041;SOR=1.412;set=HC	GT:AD:AF:DP	0/1:80,23:0.22:103
chr8	121326427	rs10505379	G	T	163.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chr8	121353651	rs1563391	A	G	4248.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:153,204:0.57:357
chr8	121353692	rs1563392	A	T	3355.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:138,162:0.54:300
chr8	121354505	rs63246862	GG	AA	619.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;JOINED;set=Intersection	GT:AD:AF:DP	0/1:8,16:0.67:24
chr8	121354851	rs2290523	G	A	131.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr8	121383048	rs4463470	T	C	2916.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr8	121383082	rs6469922	A	T	1222.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr8	121408195	rs6650	T	C	5413.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr8	121426425	rs68086071	AGT	A	410.74	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr8	121455558	rs5894521	G	GA	1470.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.032;ClippingRankSum=0.000;DB;DP=227;ExcessHet=3.0103;FS=0.750;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.70;ReadPosRankSum=-0.502;SOR=0.591;set=HC	GT:AD:AF:DP	0/1:59,110:0.65:169
chr8	121457749	rs146436573	A	C	784.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.035;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.02;ReadPosRankSum=0.658;SOR=0.540;set=HC	GT:AD:AF:DP	0/1:16,33:0.67:49
chr8	121471361	rs6984090	A	G	124.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr8	121483196	rs13248998	G	A	1939.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr8	121509825	rs35918868	C	CTTT	367.74	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr8	121530061	rs13258768	C	T	4209.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:1,149:0.99:150
chr8	121530190	rs13258848	A	G	14726.77	.	AC=2;AF=1.00;AN=2;DB;DP=566;set=Intersection	GT:AD:AF:DP	1/1:2,556:1.00:558
chr8	121530384	rs34340354	CTT	C	2372.73	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr8	121531154	rs13269481	G	A	2498.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr8	121561201	rs138861807	GGA	G	46.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.812;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=1.698;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.61;ReadPosRankSum=-0.421;SOR=0.351;set=HC	GT:AD:AF:DP	0/1:67,10:0.13:77
chr8	121587165	rs6984991	G	T	247.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:29,13:0.31:42
chr8	123683642	.	GA	G	61.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.810;ClippingRankSum=0.000;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=-0.523;QD=0.86;ReadPosRankSum=0.730;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:55,17:0.24:72
chr8	124042733	rs2891672	T	C	223.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:8,9:0.53:17
chr8	124114333	rs10956116	G	T	2298.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:40,93:0.70:133
chr8	124114560	rs10956117	T	C	4123.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:146,187:0.56:333
chr8	124132166	rs17314930	G	A	458.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:5,17:0.77:22
chr8	124138855	rs16898012	G	A	5573.77	.	AC=1;AF=0.500;AN=2;DB;DP=511;set=Intersection	GT:AD:AF:DP	0/1:222,275:0.55:497
chr8	124140413	rs61061621	AT	A	683.73	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:25,30:0.55:55
chr8	124140805	rs148339992	C	CATA	1400.73	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:20,36:0.64:56
chr8	124142489	rs2272724	T	C	5117.77	.	AC=1;AF=0.500;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	0/1:169,245:0.59:414
chr8	124154697	rs10101626	G	T	1136.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:38,52:0.58:90
chr8	124154737	.	AT	A	44.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.187;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=2.570;MLEAC=1;MLEAF=0.500;MQ=60.60;MQRankSum=1.745;QD=1.86;ReadPosRankSum=-0.748;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:15,9:0.38:24
chr8	124154756	rs10101435	A	G	179.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:12,9:0.43:21
chr8	124194181	rs11780863	T	C	3531.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:121,162:0.57:283
chr8	124194968	rs3739291	C	T	3518.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:73,149:0.67:222
chr8	124228190	.	TA	T	187.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.376;ClippingRankSum=0.000;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.701;QD=1.43;ReadPosRankSum=0.677;SOR=0.623;set=HC	GT:AD:AF:DP	0/1:103,28:0.21:131
chr8	124232550	.	G	GA	90.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.705;ClippingRankSum=0.000;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.82;ReadPosRankSum=0.400;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:89,21:0.19:110
chr8	124359749	rs9297666	C	G	785.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:50,36:0.42:86
chr8	124359794	rs79736655	C	T	312.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:19,13:0.41:32
chr8	124381445	.	GTA	G	146.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.607;ClippingRankSum=0.000;DP=93;ExcessHet=3.0103;FS=5.133;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=2.433;QD=1.73;ReadPosRankSum=-0.692;SOR=0.213;set=HC	GT:AD:AF:DP	0/1:73,12:0.14:85
chr8	124408350	rs4871359	C	T	683.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:32,30:0.48:62
chr8	124440174	rs6999234	A	G	765.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:37,34:0.48:71
chr8	124440336	rs10628888	A	AAG,AAAG	2626.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.29;QD=38.07;SOR=1.733;set=HC	GT:AD:AF:DP	1/2:0,31,38:0.45,0.55:69
chr8	124442114	rs71961566	TGTCTCAAAAAAAAAAAAAAAAAATCCC	T	146.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.157;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=6.901;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.16;ReadPosRankSum=-1.174;SOR=1.784;set=HC	GT:AD:AF:DP	0/1:48,20:0.29:68
chr8	124442187	rs13278992	A	G	2149.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:133,100:0.43:233
chr8	124448689	rs9297669	T	C	5263.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr8	124448736	rs7014678	A	G	2131.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:191,111:0.37:302
chr8	124448804	rs6470147	T	A	2387.77	.	AC=1;AF=0.500;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	0/1:273,134:0.33:407
chr8	124448907	rs10590897	CTT	C	819.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.154;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=0.936;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=1.616;QD=7.88;ReadPosRankSum=0.191;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:66,38:0.37:104
chr8	124448947	rs6470148	A	G	1961.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr8	124449466	rs3824250	C	T	1260.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:132,64:0.33:196
chr8	124449672	rs11991520	T	G	1295.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:122,66:0.35:188
chr8	124449712	rs11987798	G	A	725.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:63,35:0.36:98
chr8	124449742	rs11987776	C	G	575.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:37,24:0.39:61
chr8	124450364	rs3765212	G	T	994.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:114,57:0.33:171
chr8	124450631	rs11992509	T	C	103.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:25,7:0.22:32
chr8	124453543	rs4416808	T	A	646.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:69,35:0.34:104
chr8	124453662	rs13269287	T	C	1884.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:209,105:0.33:314
chr8	124453799	rs1045270	A	G	724.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:59,37:0.39:96
chr8	124658404	rs11786734	A	G	2590.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr8	124659329	rs11991744	C	A	3424.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr8	124659369	.	T	G	225.77	.	AC=1;AF=0.500;AN=2;DP=67;set=Intersection	GT:AD:AF:DP	0/1:48,16:0.25:64
chr8	124663769	rs10109736	A	T	5056.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr8	124664130	rs11780509	C	T	10119.77	.	AC=2;AF=1.00;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	1/1:0,372:1.00:372
chr8	124664167	rs11784192	T	C	9719.77	.	AC=2;AF=1.00;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	1/1:0,364:1.00:364
chr8	124664792	rs7387544	C	T	9676.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:0,348:1.00:348
chr8	124664873	rs7387792	AT	GC	11744.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;JOINED;MQ=59.98;set=Intersection	GT:AD:AF:DP	1/1:1,264:1.00:265
chr8	124665211	rs7387855	C	T	2514.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr8	124693410	rs4471017	G	C	646.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:11,23:0.68:34
chr8	124693444	rs3739283	C	T	1874.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr8	124693641	rs4314634	G	A	3131.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:114,143:0.56:257
chr8	124696867	rs2294015	C	T	1014.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:92,58:0.39:150
chr8	124710729	rs2294013	C	T	6447.77	.	AC=1;AF=0.500;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	0/1:170,298:0.64:468
chr8	124710761	rs150888735	G	A	3443.77	.	AC=1;AF=0.500;AN=2;DB;DP=551;set=Intersection	GT:AD:AF:DP	0/1:352,194:0.36:546
chr8	124749610	rs6470179	C	T	12579.77	.	AC=2;AF=1.00;AN=2;DB;DP=473;set=Intersection	GT:AD:AF:DP	1/1:0,467:1.00:467
chr8	124749651	rs11331268	TC	T	12993.73	.	AC=2;AF=1.00;AN=2;DB;DP=472;set=Intersection	GT:AD:AF:DP	1/1:0,437:1.00:437
chr8	124749704	rs10956146	T	G	3276.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:103,146:0.59:249
chr8	124817605	rs71576705	CT	C	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.059;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=1.028;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.686;QD=0.62;ReadPosRankSum=-1.891;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:64,19:0.23:83
chr8	124824826	rs1946586	G	A	4822.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr8	125033678	rs7820272	G	A	531.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:30,24:0.44:54
chr8	125035533	rs4521739	G	A	490.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:20,20:0.50:40
chr8	125035788	rs4358790	G	C	1370.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:133,75:0.36:208
chr8	125047370	rs4871451	T	C	606.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr8	125051966	rs4269524	A	G	3443.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr8	125052018	rs4389914	T	C	7557.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr8	125061895	rs4870887	G	A	3618.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr8	125072426	rs4483140	T	C	9776.77	.	AC=2;AF=1.00;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	1/1:0,367:1.00:367
chr8	125076589	rs7012186	T	G	5013.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr8	125076988	rs4871460	T	C	1090.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr8	125088636	rs9643188	A	G	5300.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr8	125094847	rs10956163	C	G	1098.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr8	125107201	rs6470219	G	A	11303.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.50;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:0,254:1.00:254
chr8	125107207	rs6470220	C	T	11299.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.49;SOR=0.809;set=HC	GT:AD:AF:DP	1/1:0,254:1.00:254
chr8	125110258	rs10956164	C	T	6376.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr8	125115420	rs56132579	G	A	1985.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:50,90:0.64:140
chr8	125343130	rs62529967	G	A	354.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:58,22:0.28:80
chr8	125384436	rs7841552	C	G	105.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.18;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr8	125463083	rs3812473	G	T	340.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:49,21:0.30:70
chr8	125463098	rs3812474	A	T	504.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:67,29:0.30:96
chr8	125463250	rs3812475	T	C	1516.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.234;ClippingRankSum=0.000;DB;DP=265;ExcessHet=3.0103;FS=0.472;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.77;ReadPosRankSum=-0.285;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:175,88:0.33:263
chr8	125498547	rs3812471	C	T	1353.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:163,75:0.32:238
chr8	125501033	rs6997089	A	G	820.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:48,42:0.47:90
chr8	125501064	rs146994194	T	TTAAG	875.73	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:23,24:0.51:47
chr8	125507538	rs3812470	A	G	81.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:10,6:0.38:16
chr8	125551567	rs7010411	C	T	1632.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:150,86:0.36:236
chr8	125562029	rs10195	C	T	1355.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:167,80:0.32:247
chr8	125565328	rs3829037	T	C	1783.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:121,87:0.42:208
chr8	125567879	rs76974812	A	G	1012.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:24,45:0.65:69
chr8	125568182	rs141972884	AGG	A	8267.73	.	AC=1;AF=0.500;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	0/1:136,237:0.64:373
chr8	125570144	rs4870903	G	A	1558.73	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.74;SOR=0.790;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr8	125574913	rs7015228	G	C	307.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:10,14:0.58:24
chr8	125574925	rs7015374	G	C	502.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:10,22:0.69:32
chr8	125575013	rs4007921	G	A	685.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:90,42:0.32:132
chr8	125577869	rs2303952	C	G	1852.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:69,83:0.55:152
chr8	125579788	rs3857944	G	A	1727.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr8	125579973	rs6470251	C	T	6753.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:2,244:0.99:246
chr8	125579990	rs6470252	C	T	6809.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:2,253:0.99:255
chr8	125580075	rs13251109	G	C	1701.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:137,87:0.39:224
chr8	125580928	rs2288664	A	G	1285.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:99,67:0.40:166
chr8	125589956	rs7002655	A	G	338.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:22,16:0.42:38
chr8	125601780	rs12682032	C	T	1426.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:33,59:0.64:92
chr8	125603298	rs11994203	G	A	200.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:23,11:0.32:34
chr8	125711670	rs11358821	TG	T	459.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:27,16:0.37:43
chr8	125739749	rs891542	A	G	3235.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:64,143:0.69:207
chr8	125877486	rs11994907	G	A	3300.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:46,91:0.66:137
chr8	125877536	rs72072035	CCT	C	2860.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.436;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=5.134;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=1.231;QD=26.74;ReadPosRankSum=-0.169;SOR=0.457;set=HC	GT:AD:AF:DP	0/1:35,72:0.67:107
chr8	125877551	.	CTTCTTT	C	2388.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.658;ClippingRankSum=0.000;DP=87;ExcessHet=3.0103;FS=0.847;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.44;ReadPosRankSum=1.420;SOR=0.591;set=HC	GT:AD:AF:DP	0/1:30,54:0.64:84
chr8	125877563	rs13282575	T	C	359.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.031;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.653;QD=4.80;ReadPosRankSum=-0.804;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:54,21:0.28:75
chr8	125877601	.	T	C	138.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.033;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=2.242;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=0.548;QD=4.79;ReadPosRankSum=-0.376;SOR=0.216;set=HC	GT:AD:AF:DP	0/1:24,5:0.17:29
chr8	125877607	.	T	C	76.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.013;ClippingRankSum=0.000;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=0.559;QD=3.20;ReadPosRankSum=-0.737;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:20,4:0.17:24
chr8	125877613	.	T	C	85.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.568;ClippingRankSum=0.000;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=0.544;QD=4.08;ReadPosRankSum=-0.857;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:18,3:0.14:21
chr8	125877619	.	T	C	49.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.721;ClippingRankSum=0.000;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=0.577;QD=2.62;ReadPosRankSum=-1.513;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:16,3:0.16:19
chr8	125877644	.	CT	C	530.73	.	AC=2;AF=1.00;AN=2;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.90;QD=33.17;SOR=2.049;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr8	125877647	.	CTTCTTCTT	C	530.73	.	AC=2;AF=1.00;AN=2;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.90;QD=33.17;SOR=2.049;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr8	126011041	rs200396489	A	AGGCGTC	106.73	.	AC=1;AF=0.500;AN=2;DB;DP=14;MQ=61.53;set=Intersection	GT:AD:AF:DP	0/1:8,4:0.33:12
chr8	126049385	rs75554479	T	C	190.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr8	126051211	.	G	C	685.77	.	AC=1;AF=0.500;AN=2;DP=84;set=Intersection	GT:AD:AF:DP	0/1:54,29:0.35:83
chr8	126056215	rs11370883	G	GC	9332.73	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr8	126378901	rs149174348	GAC	G	571.73	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:7,15:0.68:22
chr8	126445505	rs13277396	G	C	5009.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr8	128099269	rs4571699	A	G	3218.77	.	AC=1;AF=0.500;AN=2;DB;DP=495;set=Intersection	GT:AD:AF:DP	0/1:316,173:0.35:489
chr8	128099457	rs61262194	CGTG	C	2805.73	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:70,74:0.51:144
chr8	128429262	rs9297754	G	C	538.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:66,30:0.31:96
chr8	129021000	rs1863562	A	G	2074.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.10;SOR=3.564;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr8	129021000	.	AAG	GAA	1894	.	AC=2;AF=1.00;AN=2;BRF=0.43;FR=1.0000;HP=1;HapScore=1;MGOF=1;MMLQ=28;MQ=60.0;NF=31;NR=2;PP=1894;QD=59.0141780261;SC=GCACAATGCTAAGCATGTGCA;SbPval=0.56;Source=Platypus;TC=35;TCF=33;TCR=2;TR=33;WE=129021010;WS=129020990;set=Platypus	GT:AD:AF:DP	1/1:2,33:0.94:35
chr8	129021002	rs2033102	G	A	2074.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.14;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr8	129021179	rs2114358	G	A	6569.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:2,264:0.99:266
chr8	129021262	rs2392823	C	T	3667.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr8	130760850	rs4144738	A	G	4173.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:108,193:0.64:301
chr8	130761030	rs4144736	G	C	1204.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:66,55:0.45:121
chr8	130761644	rs4527833	C	T	3875.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:91,174:0.66:265
chr8	130772882	rs11276511	T	TGCCTGAGTCTTTCCCATA	9024.73	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr8	130774782	rs76880196	T	C	284.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:19,13:0.41:32
chr8	130788548	rs4733741	C	T	6064.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr8	130859185	rs115025292	A	C	319.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:6,14:0.70:20
chr8	130874674	rs298611	A	C	482.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:1,13:0.93:14
chr8	130874688	.	T	C	398.77	.	AC=2;AF=1.00;AN=2;DP=10;set=Intersection	GT:AD:AF:DP	1/1:1,9:0.90:10
chr8	131020729	rs4733757	T	C	1636.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:159,84:0.35:243
chr8	131092026	rs6415509	T	A	640.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.322;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=8.551;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.32;ReadPosRankSum=-1.773;SOR=0.210;set=HC	GT:AD:AF:DP	0/1:42,35:0.45:77
chr8	131124559	rs966185	T	C	3076.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:93,128:0.58:221
chr8	131127831	rs2305513	T	C	2151.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:55,91:0.62:146
chr8	131172968	rs10089819	C	T	1114.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:37,55:0.60:92
chr8	131181348	rs11392401	A	AT	215.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.319;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=2.424;MLEAC=1;MLEAF=0.500;MQ=60.72;MQRankSum=0.000;QD=4.00;ReadPosRankSum=1.193;SOR=1.051;set=HC	GT:AD:AF:DP	0/1:34,20:0.37:54
chr8	131192905	rs28495072	G	C	1718.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:38,72:0.65:110
chr8	131193153	rs71572332	T	TA	655.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.328;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=2.929;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.07;ReadPosRankSum=-0.745;SOR=1.034;set=HC	GT:AD:AF:DP	0/1:56,52:0.48:108
chr8	131199666	rs374655037	AT	A	47.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.979;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=8.288;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.85;ReadPosRankSum=0.000;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:40,16:0.29:56
chr8	131353139	rs13265869	T	C	14900.77	.	AC=2;AF=1.00;AN=2;DB;DP=579;set=Intersection	GT:AD:AF:DP	1/1:0,569:1.00:569
chr8	131373887	rs10091130	C	G	12581.77	.	AC=2;AF=1.00;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	1/1:0,453:1.00:453
chr8	131413956	rs10090106	A	G	865.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr8	131414083	rs10090231	A	G	4964.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:2,186:0.99:188
chr8	131414257	rs10090767	G	A	1342.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr8	131792607	rs11382893	C	CA,CAAA	904.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.097;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.24;MQRankSum=0.340;QD=22.07;ReadPosRankSum=0.878;SOR=0.602;set=HC	GT:AD:AF:DP	1/2:2,12,27:0.29,0.66:41
chr8	131812577	rs3067432	C	CA	334.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.082;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=1.426;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.78;ReadPosRankSum=1.299;SOR=0.960;set=HC	GT:AD:AF:DP	0/1:42,28:0.40:70
chr8	131812899	rs263237	G	T	2795.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr8	131826621	rs1435446	G	A	192.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.554;ClippingRankSum=0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.06;ReadPosRankSum=-1.083;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:2,10:0.83:12
chr8	131848465	rs2259296	A	G	1220.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:70,62:0.47:132
chr8	131897082	rs4128982	A	G	659.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:29,27:0.48:56
chr8	132936266	rs142533670	ATCAGTAAGTCC	A	606.73	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:36,18:0.33:54
chr8	132936281	rs200639448	ATACT	A	669.73	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:40,20:0.33:60
chr8	132947529	rs4736523	A	G	1351.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr8	132952727	rs34080810	A	AT	2674.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.687;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=2.105;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=15.11;ReadPosRankSum=0.578;SOR=0.433;set=HC	GT:AD:AF:DP	1/1:25,152:0.86:177
chr8	132966028	rs10755935	T	C	1490.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.10;SOR=2.522;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr8	132966045	.	CT	C	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.357;ClippingRankSum=0.000;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.52;ReadPosRankSum=-0.582;SOR=0.523;set=HC	GT:AD:AF:DP	0/1:50,17:0.25:67
chr8	132980709	rs6471017	G	A	3629.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr8	132980781	rs2270879	C	T	1385.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr8	132982824	rs1051221	A	G	8789.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	1/1:0,334:1.00:334
chr8	132988478	rs2270876	T	A	376.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr8	132996359	rs11783016	C	T	1476.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:42,70:0.62:112
chr8	133008823	rs2270873	G	A	2126.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr8	133023163	rs4736529	G	C	9419.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	1/1:0,334:1.00:334
chr8	133041177	rs6471024	G	A	4059.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.11;SOR=3.309;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr8	133041179	rs6471025	A	G	4059.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.43;SOR=3.080;set=HC	GT:AD:AF:DP	1/1:0,98:1.00:98
chr8	133041242	rs6471026	C	G	8000.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:1,283:1.00:284
chr8	133045480	rs2202068	C	T	4807.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr8	133046927	rs6471028	T	C	6952.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr8	133046977	rs7834841	A	G	8891.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,326:1.00:326
chr8	133047071	rs11779306	G	A	1361.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:138,77:0.36:215
chr8	133048593	rs1472571	C	T	4028.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:128,183:0.59:311
chr8	133048619	rs7461611	T	C	9329.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:0,344:1.00:344
chr8	133049810	rs6992506	A	G	3001.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr8	133050900	rs871959	A	G	418.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr8	133053188	rs2334791	C	T	668.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:13,28:0.68:41
chr8	133053309	rs7386782	T	C	7617.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.34;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,168:1.00:168
chr8	133053318	rs7386783	T	C	7587.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.36;SOR=0.825;set=HC	GT:AD:AF:DP	1/1:0,175:1.00:175
chr8	133053714	rs1466884	G	A	1857.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr8	133058325	rs6998359	A	G	229.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:21,12:0.36:33
chr8	133067315	rs4736538	G	A	5371.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:1,196:0.99:197
chr8	133089975	rs2280851	A	G	3363.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr8	133091905	rs11778661	C	T	540.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:41,27:0.40:68
chr8	133092138	rs2403730	G	A	2225.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:215,117:0.35:332
chr8	133101818	rs6471038	G	A	6935.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr8	133107830	rs7833441	T	C	5988.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr8	133107893	rs10956634	A	G	8405.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chr8	133108110	rs2469607	T	C	571.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:18,22:0.55:40
chr8	133111307	rs2469493	C	G	4107.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr8	133112392	rs1370568	G	A	5656.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr8	133113531	rs34842500	A	T	1491.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:103,76:0.42:179
chr8	133116251	rs6998880	C	T	617.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:34,31:0.48:65
chr8	133116310	rs2436098	G	T	1294.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:62,63:0.50:125
chr8	133117362	rs9642906	T	A	752.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:77,37:0.32:114
chr8	133144346	rs77693956	A	G	861.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.959;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.13;ReadPosRankSum=-0.850;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:63,43:0.41:106
chr8	133146798	rs111447844	TGAGGA	T	70.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.981;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=3.332;MLEAC=1;MLEAF=0.500;MQ=60.98;MQRankSum=0.967;QD=7.86;ReadPosRankSum=-0.732;SOR=2.833;set=HC	GT:AD:AF:DP	0/1:6,3:0.33:9
chr8	133150103	rs2469515	C	T	2549.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:80,119:0.60:199
chr8	133175971	rs893391	G	C	1640.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr8	133184644	rs3049340	TAC	T,TACAC	863.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.608;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=18.38;ReadPosRankSum=0.816;SOR=0.665;set=HC	GT:AD:AF:DP	1/2:4,30,13:0.64,0.28:47
chr8	133459549	rs72721077	A	G	3959.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:108,172:0.61:280
chr8	133634814	rs2272681	C	T	8368.77	.	AC=1;AF=0.500;AN=2;DB;DP=596;set=Intersection	GT:AD:AF:DP	0/1:214,376:0.64:590
chr8	133637659	rs2293979	G	A	6237.77	.	AC=1;AF=0.500;AN=2;DB;DP=503;set=Intersection	GT:AD:AF:DP	0/1:195,297:0.60:492
chr8	133700036	rs3857933	T	C	2864.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:69,130:0.65:199
chr8	133723166	rs1895807	A	G	3407.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:144,171:0.54:315
chr8	133734455	rs60723518	C	CAA	245.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.550;ClippingRankSum=-0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.47;ReadPosRankSum=-0.376;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:10,19:0.66:29
chr8	133740259	rs201428959	AGT	A	214.25	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:4,12:0.75:16
chr8	133764263	rs2467986	G	A	233.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:26,13:0.33:39
chr8	133764321	rs1469265	G	A	109.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:11,6:0.35:17
chr8	133769625	rs11778229	T	C	494.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:40,25:0.38:65
chr8	133770869	rs11314346	AT	A	94.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.088;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=4.232;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=1.386;QD=2.63;ReadPosRankSum=-1.793;SOR=0.134;set=HC	GT:AD:AF:DP	0/1:24,12:0.33:36
chr8	133880334	rs180203	T	C	4971.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr8	133885554	rs180210	T	C	667.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr8	133900252	rs180223	T	G	7407.77	.	AC=1;AF=0.500;AN=2;DB;DP=537;set=Intersection	GT:AD:AF:DP	0/1:203,327:0.62:530
chr8	133900386	rs2069550	T	C	8622.77	.	AC=1;AF=0.500;AN=2;DB;DP=655;set=Intersection	GT:AD:AF:DP	0/1:248,400:0.62:648
chr8	133900840	rs10699743	A	ATG	226.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.473;ClippingRankSum=-0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=20.61;ReadPosRankSum=-0.114;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:2,9:0.82:11
chr8	133909974	rs853326	A	G	2515.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:70,115:0.62:185
chr8	133920516	rs16904786	G	A	2319.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.877;ClippingRankSum=0.000;DB;DP=485;ExcessHet=3.0103;FS=0.577;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.85;ReadPosRankSum=-0.283;SOR=0.762;set=HC	GT:AD:AF:DP	0/1:340,138:0.29:478
chr8	133947836	rs2739061	T	G	732.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:14,32:0.70:46
chr8	133947859	rs2739062	A	G	1803.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr8	133953673	rs61744678	C	T	2937.77	.	AC=1;AF=0.500;AN=2;DB;DP=545;set=Intersection	GT:AD:AF:DP	0/1:361,170:0.32:531
chr8	133960991	rs2246624	C	T	1168.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr8	133961237	rs2246611	G	C	7172.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr8	133961299	rs34207784	GA	G	503.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.189;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=1.055;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.60;ReadPosRankSum=-2.207;SOR=0.963;set=HC	GT:AD:AF:DP	0/1:42,48:0.53:90
chr8	133978701	rs141752476	GTC	G	1192.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.676;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.930;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.29;ReadPosRankSum=0.022;SOR=0.562;set=HC	GT:AD:AF:DP	0/1:27,51:0.65:78
chr8	133978709	.	CTCTG	C	83.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.428;ClippingRankSum=0.000;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.91;ReadPosRankSum=1.401;SOR=0.547;set=HC	GT:AD:AF:DP	0/1:80,12:0.13:92
chr8	133978711	rs28452373	C	G	232.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.425;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=2.547;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.53;ReadPosRankSum=0.954;SOR=1.102;set=HC	GT:AD:AF:DP	0/1:73,19:0.21:92
chr8	133978796	rs77157347	C	A	1704.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:148,92:0.38:240
chr8	133980214	rs16904799	A	G	587.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:70,32:0.31:102
chr8	133984821	rs1554541	G	T	137.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.243;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=15.214;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.29;ReadPosRankSum=-1.561;SOR=2.146;set=HC	GT:AD:AF:DP	0/1:89,18:0.17:107
chr8	133985115	rs1403486	A	G	114.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:18,7:0.28:25
chr8	133995475	rs10105779	A	G	507.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:43,21:0.33:64
chr8	134024278	rs61741457	C	T	2304.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:47,105:0.69:152
chr8	134052198	rs3835182	G	GCA,GCACA	3688.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.253;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=2.428;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.25;MQRankSum=0.347;QD=33.53;ReadPosRankSum=-0.646;SOR=0.877;set=HC	GT:AD:AF:DP	1/2:6,23,81:0.21,0.74:110
chr8	134062912	rs2252807	A	G	3034.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr8	134062983	rs2252805	C	T	7670.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr8	134107223	rs2272706	A	G	234.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:4,10:0.71:14
chr8	134107618	rs10103453	G	A	260.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:2,10:0.83:12
chr8	134108453	rs2069568	C	T	2549.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:59,107:0.64:166
chr8	134108546	rs2069569	T	C	4465.77	.	AC=1;AF=0.500;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	0/1:132,211:0.62:343
chr8	134114716	rs733735	G	A	1286.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:21,52:0.71:73
chr8	134114771	rs4478553	C	T	2130.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:58,94:0.62:152
chr8	134125650	rs72433148	C	CT	98.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.206;ClippingRankSum=0.000;DB;DP=229;ExcessHet=3.0103;FS=4.502;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.45;ReadPosRankSum=0.933;SOR=0.401;set=HC	GT:AD:AF:DP	0/1:185,36:0.16:221
chr8	134125682	rs1133076	G	A	4639.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:114,210:0.65:324
chr8	134225068	rs10089461	T	C	1730.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr8	134225396	rs55733525	T	TC	12389.73	.	AC=2;AF=1.00;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	1/1:0,349:1.00:349
chr8	134225434	rs13258091	T	C	8313.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr8	134237578	rs2280834	G	C	1999.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr8	134239943	.	T	C	2823.77	.	AC=1;AF=0.500;AN=2;DP=198;set=Intersection	GT:AD:AF:DP	0/1:74,119:0.62:193
chr8	134251449	rs2929976	T	C	1848.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr8	134260174	rs2227262	G	A	715.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:81,40:0.33:121
chr8	134261065	rs2233335	T	G	1422.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:54,66:0.55:120
chr8	134266970	rs2272650	C	G	326.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:31,16:0.34:47
chr8	134267721	rs16904874	C	T	453.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:63,26:0.29:89
chr8	134267762	rs3824240	T	C	280.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:28,13:0.32:41
chr8	134270457	rs10113567	G	A	1280.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:27,49:0.64:76
chr8	134270468	rs139790285	CCA	C	734.73	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:56,30:0.35:86
chr8	134270548	rs2272651	T	C	4002.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:112,178:0.61:290
chr8	134274226	rs2233324	C	G	18617.77	.	AC=2;AF=1.00;AN=2;DB;DP=693;set=Intersection	GT:AD:AF:DP	1/1:2,683:1.00:685
chr8	134292288	rs2977507	T	C	944.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr8	134292516	rs2272653	A	G	5865.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr8	134296722	rs7816664	T	C	1337.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:19,49:0.72:68
chr8	134296742	rs7820205	T	C	737.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:14,32:0.70:46
chr8	134308600	rs4236901	T	C	1534.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:107,69:0.39:176
chr8	134308858	rs71526287	A	C	1760.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:157,96:0.38:253
chr8	134314369	rs2976580	A	G	883.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr8	134474148	rs1048479	C	T	6794.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr8	135577530	rs6999469	G	A	10832.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.14;SOR=0.710;set=HC	GT:AD:AF:DP	1/1:0,240:1.00:240
chr8	135577533	rs6988653	T	G	10856.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.49;SOR=0.710;set=HC	GT:AD:AF:DP	1/1:0,244:1.00:244
chr8	135577628	rs200726532	G	A	4274.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:125,193:0.61:318
chr8	135600716	rs894358	C	G	2325.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr8	135602581	rs3739425	A	G	3824.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:1,142:0.99:143
chr8	135612595	rs894343	A	G	3029.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr8	135612745	rs894344	A	G	13277.77	.	AC=2;AF=1.00;AN=2;DB;DP=524;MQ=60.02;set=Intersection	GT:AD:AF:DP	1/1:4,507:0.99:511
chr8	135613624	rs894347	A	G	767.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr8	135614705	rs3739423	A	G	12078.77	.	AC=2;AF=1.00;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	1/1:2,440:1.00:442
chr8	135614972	rs3739422	A	G	7184.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:1,251:1.00:252
chr8	135620894	rs3739421	T	G	2534.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr8	135622640	rs2277138	T	C	1404.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr8	135649848	rs12541381	G	A	3252.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:49,137:0.74:186
chr8	135669810	rs17778003	C	T	814.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:20,40:0.67:60
chr8	136306285	rs118110686	C	T	193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.362;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=16.15;ReadPosRankSum=-0.849;SOR=1.445;set=HC	GT:AD:AF:DP	0/1:4,8:0.67:12
chr8	136306291	rs4344113	G	C	474.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.56;SOR=5.136;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr8	136560952	rs12545587	A	G	2186.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr8	136561153	rs11166602	A	G	5138.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr8	136657198	rs4243846	T	C	368.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:28,17:0.38:45
chr8	136657233	rs6984897	C	T	1297.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:38,55:0.59:93
chr8	136657534	rs4373553	G	A	475.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:19,20:0.51:39
chr8	136659195	rs28621864	C	T	1924.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:178,102:0.36:280
chr8	136659426	rs3184618	G	A	652.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:38,29:0.43:67
chr8	139144766	rs71532161	T	C	1938.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:39,80:0.67:119
chr8	139149510	rs6577877	A	C	15412.77	.	AC=2;AF=1.00;AN=2;DB;DP=573;set=Intersection	GT:AD:AF:DP	1/1:0,564:1.00:564
chr8	139151375	rs4634694	C	T	3565.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.08;QD=27.86;SOR=1.926;set=HC	GT:AD:AF:DP	1/1:0,128:1.00:128
chr8	139151421	rs4634695	C	T	2168.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr8	139151428	rs35147483	C	CTG	1983.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr8	139153374	rs4909738	G	C	1627.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr8	139158317	rs7006664	T	C	9834.77	.	AC=2;AF=1.00;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	1/1:1,372:1.00:373
chr8	139164192	rs3750306	G	A	9834.77	.	AC=2;AF=1.00;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	1/1:0,368:1.00:368
chr8	139165068	rs3763590	C	T	6209.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr8	139165272	rs7835712	TG	CA	20538.73	.	AC=2;AF=1.00;AN=2;DB;DP=468;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,465:1.00:465
chr8	139165289	rs7835830	T	C	11654.77	.	AC=2;AF=1.00;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	1/1:0,422:1.00:422
chr8	139165463	rs11311519	CA	C	848.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:2,44:0.96:46
chr8	139189502	rs6985633	T	A	3342.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr8	139190943	rs66488273	C	CA	2215.73	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:2,89:0.98:91
chr8	139190957	rs4909747	T	G	2419.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr8	139321179	rs6577909	A	G	5487.77	.	AC=1;AF=0.500;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	0/1:161,260:0.62:421
chr8	139323246	rs56096441	A	G	542.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr8	139380103	rs370836089	AAC	A	375.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.207;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=3.413;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.58;ReadPosRankSum=-0.430;SOR=1.133;set=HC	GT:AD:AF:DP	0/1:80,25:0.24:105
chr8	139614436	rs4394401	G	A	7157.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr8	139614582	rs6993225	C	T	891.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr8	139617046	rs12546923	A	C	7298.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr8	139618754	rs4471041	T	C	8276.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:1,321:1.00:322
chr8	139620049	rs12681582	T	G	1604.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr8	139620267	rs11166829	G	A	5725.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr8	139626176	rs7000261	C	G	2373.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr8	139631650	rs7009396	A	G	1561.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr8	139635883	rs7836250	A	C	3014.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr8	139635920	rs7839790	T	A	4466.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr8	139638307	rs3924860	T	C	511.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr8	139647262	rs10091563	A	G	8196.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.53;SOR=0.929;set=HC	GT:AD:AF:DP	1/1:0,309:1.00:309
chr8	139648892	rs11166830	G	A	6577.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr8	139658747	rs4909439	C	T	1717.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr8	139668032	rs11166832	T	C	2782.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr8	139668300	rs12675091	C	T	5730.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:2,215:0.99:217
chr8	139672602	rs4072506	T	C	2120.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr8	139672671	rs3935045	T	C	4993.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr8	139674213	rs11780732	C	T	1100.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:15,44:0.75:59
chr8	139675869	rs11166835	G	T	1503.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:27,59:0.69:86
chr8	139676082	rs4410946	A	G	2745.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:61,120:0.66:181
chr8	139688656	.	AAAAGAAAGAAAG	A	566.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.215;ClippingRankSum=0.000;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-1.875;QD=28.34;ReadPosRankSum=1.759;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:4,16:0.80:20
chr8	139688697	.	A	AAAGG	284.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.504;ClippingRankSum=0.000;DP=53;ExcessHet=3.0103;FS=1.300;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=1.604;QD=5.93;ReadPosRankSum=0.318;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:34,14:0.29:48
chr8	139691995	rs140389566	TGTTA	T	4551.73	.	AC=1;AF=0.500;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	0/1:258,130:0.34:388
chr8	139696502	rs111396507	GAA	G	658.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.381;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.056;QD=6.40;ReadPosRankSum=-1.235;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:68,35:0.34:103
chr8	139696635	rs4506262	T	C	7996.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr8	139697478	rs9644500	T	C	4586.77	.	AC=1;AF=0.500;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	0/1:137,214:0.61:351
chr8	139701209	rs4909444	G	T	1313.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:73,66:0.47:139
chr8	139706759	.	C	T	1793.77	.	AC=1;AF=0.500;AN=2;DP=160;set=Intersection	GT:AD:AF:DP	0/1:76,81:0.52:157
chr8	139712323	rs4909835	A	G	5954.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr8	139727811	rs143920292	TTAA	T	352.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.580;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=6.268;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.66;ReadPosRankSum=-0.820;SOR=1.739;set=HC	GT:AD:AF:DP	0/1:30,23:0.43:53
chr8	139727981	rs9324493	A	G	3603.77	.	AC=1;AF=0.500;AN=2;DB;DP=503;set=Intersection	GT:AD:AF:DP	0/1:300,196:0.40:496
chr8	139728575	rs113675734	TC	T	3013.73	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:141,110:0.44:251
chr8	139733089	rs34929697	CA	C	692.73	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:44,27:0.38:71
chr8	139734462	rs12678237	T	C	4887.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr8	139736649	rs28726333	C	A	132.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:10,8:0.44:18
chr8	139736726	rs62527958	T	C	434.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:52,25:0.32:77
chr8	139736793	rs62527959	A	G	1059.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:115,61:0.35:176
chr8	139736933	rs10112806	C	A	2160.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:190,116:0.38:306
chr8	139749638	rs4409435	T	C	742.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr8	139749799	rs10111520	G	T	1279.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:55,64:0.54:119
chr8	139767349	rs2318338	T	C	3532.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr8	139768085	rs7825723	G	A	5900.77	.	AC=1;AF=0.500;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	0/1:163,266:0.62:429
chr8	139774831	.	G	GCA	2997	.	AC=2;AF=1.00;AN=2;BRF=0.41;FR=1.0000;HP=1;HapScore=1;MGOF=49;MMLQ=21;MQ=60.2;NF=4;NR=53;PP=2997;QD=20;SC=AAACGCACGTGCACACACACA;SbPval=0.78;Source=Platypus;TC=82;TCF=8;TCR=74;TR=57;WE=139774839;WS=139774821;set=Platypus	GT:AD:AF:DP	1/1:25,57:0.70:82
chr8	139774852	rs149851445	C	CACACACA,CACACACACA	3762.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=109;set=Intersection	GT:AF:DP	1/2:0.59,0.40:86
chr8	139774866	rs12550638	G	A	3370.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr8	139823922	rs2318332	C	G	448.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:5,17:0.77:22
chr8	139824057	rs10101430	G	A	1311.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:24,54:0.69:78
chr8	139825393	rs6577951	A	G	1218.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:18,50:0.74:68
chr8	139838912	rs2292927	T	C	3912.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr8	139845520	rs6993839	G	A	1733.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr8	139889972	rs4736255	A	G	1856.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr8	141034189	rs9792174	A	T	4744.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.178;ClippingRankSum=0.000;DB;DP=335;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=15.41;ReadPosRankSum=0.717;SOR=0.658;set=HC	GT:AD:AF:DP	1/1:33,275:0.89:308
chr8	141293914	.	TA	T	176.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.195;ClippingRankSum=0.000;DP=64;ExcessHet=3.0103;FS=1.080;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.05;ReadPosRankSum=1.827;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:37,21:0.36:58
chr8	141297613	rs6999767	T	C	525.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:68,31:0.31:99
chr8	141310486	rs12156047	A	G	687.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:47,35:0.43:82
chr8	141407698	rs3779658	T	C	1819.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:47,80:0.63:127
chr8	141436826	rs6998221	C	T	339.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:15,16:0.52:31
chr8	141445349	rs11267571	AAGAAAACAAAAAACAAAAACC	A	4633.73	.	AC=1;AF=0.500;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	0/1:102,119:0.54:221
chr8	141461062	rs3735803	G	A	4838.77	.	AC=1;AF=0.500;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	0/1:118,215:0.65:333
chr8	141461185	rs3735802	A	G	5797.77	.	AC=1;AF=0.500;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	0/1:181,264:0.59:445
chr8	141461266	rs3735801	A	G	5851.77	.	AC=1;AF=0.500;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	0/1:164,258:0.61:422
chr8	141525465	rs2231527	T	C	1073.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr8	141542261	.	TGA	T	136.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.078;ClippingRankSum=0.000;DP=131;ExcessHet=3.0103;FS=2.686;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.25;ReadPosRankSum=1.588;SOR=0.363;set=HC	GT:AD:AF:DP	0/1:96,13:0.12:109
chr8	141549346	rs35387146	CT	C	1776.73	.	AC=1;AF=0.500;AN=2;DB;DP=75;MQ=60.14;set=Intersection	GT:AD:AF:DP	0/1:19,56:0.75:75
chr8	141557497	rs2292782	T	C	1523.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:45,61:0.58:106
chr8	141559358	rs2292781	G	A	4765.77	.	AC=1;AF=0.500;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	0/1:121,206:0.63:327
chr8	141561393	rs2292779	G	C	2050.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:46,87:0.65:133
chr8	141565892	rs4961270	A	C	1529.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:16,57:0.78:73
chr8	141566311	rs2271738	C	T	3788.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:83,164:0.66:247
chr8	141566487	rs2271736	G	A	1055.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:26,42:0.62:68
chr8	141568622	rs2292778	G	A	7139.77	.	AC=1;AF=0.500;AN=2;DB;DP=516;set=Intersection	GT:AD:AF:DP	0/1:186,328:0.64:514
chr8	141568699	rs2292777	A	G	6824.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:2,250:0.99:252
chr8	141568725	rs2292776	G	A	2292.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:65,94:0.59:159
chr8	141572497	rs2292774	GG	AA	791.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;JOINED;set=Intersection	GT:AD:AF:DP	0/1:12,19:0.61:31
chr8	141582896	rs13276958	T	C	565.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:43,27:0.39:70
chr8	141583108	rs34527405	ATT	A,AT	2011.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.976;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.06;MQRankSum=0.000;QD=18.63;ReadPosRankSum=-0.119;SOR=1.047;set=HC	GT:AD:AF:DP	1/2:7,82,19:0.76,0.18:108
chr8	141669818	rs3835176	AT	A	2559.73	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:9,137:0.94:146
chr8	141684170	rs3639	T	C	3868.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr8	141685641	rs6998337	C	A	4527.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:1,174:0.99:175
chr8	141696834	rs41272409	A	G	1080.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:116,59:0.34:175
chr8	141742499	rs184707307	T	C	256.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:12,12:0.50:24
chr8	141744917	rs45613837	G	A	3835.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr8	141749052	rs11464275	A	AT	728.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr8	141754888	rs372806706	GA	G	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.087;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=4.790;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.56;ReadPosRankSum=-0.722;SOR=0.799;set=HC	GT:AD:AF:DP	0/1:48,16:0.25:64
chr8	141756991	rs369382658	CT	C	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.690;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.97;ReadPosRankSum=0.363;SOR=0.461;set=HC	GT:AD:AF:DP	0/1:29,14:0.33:43
chr8	141762558	rs6578132	G	A	1438.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr8	141774282	rs7840381	A	C	1765.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr8	141774576	rs4378011	A	G	42.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr8	141779826	rs10875458	C	A	1285.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr8	141810755	.	A	G	627.77	.	AC=1;AF=0.500;AN=2;DP=98;set=Intersection	GT:AD:AF:DP	0/1:63,33:0.34:96
chr8	141840645	rs4246127	G	A	1892.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr8	141840739	rs4246128	G	A	524.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr8	141856843	.	A	G	1193.77	.	AC=1;AF=0.500;AN=2;DP=82;set=Intersection	GT:AD:AF:DP	0/1:30,50:0.62:80
chr8	141931168	rs41272413	G	A	410.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:45,22:0.33:67
chr8	141994297	rs4961311	A	G	945.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr8	142138860	rs3739232	C	G	872.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:52,44:0.46:96
chr8	142139028	rs116915947	G	T	407.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:11,20:0.65:31
chr8	142146708	rs307772	T	C	10931.77	.	AC=2;AF=1.00;AN=2;DB;DP=432;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.15;SOR=0.703;set=HC	GT:AD:AF:DP	1/1:0,418:1.00:418
chr8	142152442	rs307765	A	G	2515.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:71,121:0.63:192
chr8	142160829	rs35212078	T	G	2555.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:46,108:0.70:154
chr8	142161064	rs3816063	C	T	3682.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:95,165:0.63:260
chr8	142161666	.	AT	A	70.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.580;ClippingRankSum=0.000;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=3.028;QD=0.73;ReadPosRankSum=-1.700;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:75,22:0.23:97
chr8	142166214	rs555399	C	T	2033.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr8	142168337	rs59830378	C	T	5114.77	.	AC=1;AF=0.500;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	0/1:179,246:0.58:425
chr8	142170884	rs2289001	C	T	896.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:160,59:0.27:219
chr8	142173356	rs428300	C	T	869.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr8	142173689	rs2369612	A	T	377.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:12,22:0.65:34
chr8	142176280	rs2241735	G	A	5324.77	.	AC=1;AF=0.500;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	0/1:184,247:0.57:431
chr8	142176507	rs412706	T	C	3388.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr8	142185580	rs12675070	G	A	3573.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:75,151:0.67:226
chr8	142185718	rs307733	T	C	3788.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:114,171:0.60:285
chr8	142186573	rs307732	A	G	1552.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:29,57:0.66:86
chr8	142191032	rs2278448	T	G	1103.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:25,43:0.63:68
chr8	142200205	rs144741369	T	TCATGTTTG	2400.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr8	142200467	rs1045303	G	A	1057.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:144,59:0.29:203
chr8	142202856	rs6990186	C	T	2977.77	.	AC=1;AF=0.500;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	0/1:233,143:0.38:376
chr8	142202884	rs7014062	T	C	10623.77	.	AC=2;AF=1.00;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	1/1:1,362:1.00:363
chr8	142203122	rs71516606	C	T	1055.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:36,45:0.56:81
chr8	142204326	rs1045248	C	G	970.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:77,50:0.39:127
chr8	142222261	rs3824235	A	G	388.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr8	142222374	rs7017848	A	G	3669.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr8	142222445	rs3739238	T	C	8922.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr8	142225990	rs2288998	G	A	5619.77	.	AC=1;AF=0.500;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	0/1:151,248:0.62:399
chr8	142226108	rs892364	C	T	1872.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:119,90:0.43:209
chr8	142228077	rs3842198	AGAGCGGCCCCGCTCCGGT	A	4072.73	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr8	142228175	.	C	T	1920.77	.	AC=1;AF=0.500;AN=2;DP=177;set=Intersection	GT:AD:AF:DP	0/1:85,91:0.52:176
chr8	142228809	rs753779	T	C	9724.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:0,369:1.00:369
chr8	142228909	rs753778	G	A	3818.77	.	AC=1;AF=0.500;AN=2;DB;DP=528;set=Intersection	GT:AD:AF:DP	0/1:314,204:0.39:518
chr8	142229145	rs3739235	A	G	5306.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr8	142229178	rs3739234	G	A	955.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:70,43:0.38:113
chr8	142229891	rs2304279	A	G	7281.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr8	142229946	rs4961256	G	A	3405.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr8	142231944	rs6983780	GC	AG	2311.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr8	142238339	rs34650936	C	A	1795.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:56,80:0.59:136
chr8	142266691	rs7002500	A	C	6386.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:1,227:1.00:228
chr8	142367335	rs10875472	T	C	3272.77	.	AC=1;AF=0.500;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	0/1:206,166:0.45:372
chr8	142367400	rs11167054	G	A	3126.77	.	AC=1;AF=0.500;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	0/1:261,155:0.37:416
chr8	142367559	rs11785629	G	A	2341.77	.	AC=1;AF=0.500;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	0/1:242,121:0.33:363
chr8	142368150	rs7388121	T	G	693.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.294;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=1.174;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.61;ReadPosRankSum=1.344;SOR=0.437;set=HC	GT:AD:AF:DP	0/1:35,20:0.36:55
chr8	142368156	rs7388122	T	A	676.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.400;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=4.958;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.81;ReadPosRankSum=0.918;SOR=0.188;set=HC	GT:AD:AF:DP	0/1:30,19:0.39:49
chr8	142444234	rs371671775	GGGGT	G	1107.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.03;SOR=2.387;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr8	142444240	rs28490954	G	C	1115.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.32;SOR=2.387;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr8	142444254	rs28372340	T	G	761.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.61;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr8	142444526	rs10104447	G	C	1985.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr8	142444780	rs10104806	G	C	3478.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr8	142445055	rs13250250	G	C	1762.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr8	142445062	rs35650977	T	TG	1398.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr8	142445095	rs28592919	C	T	1477.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.46;SOR=0.811;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr8	142445095	.	CCA	TCT	1382	.	AC=2;AF=1.00;AN=2;BRF=0.31;FR=1.0000;HP=3;HapScore=1;MGOF=51;MMLQ=28;MQ=60.0;NF=10;NR=14;PP=1382;QD=59.8111614526;SC=TCCTCCAGCCCCAGTTTGCCT;SbPval=0.65;Source=Platypus;TC=27;TCF=12;TCR=15;TR=24;WE=142445105;WS=142445085;set=Platypus	GT:AD:AF:DP	1/1:3,24:0.89:27
chr8	142445097	rs28590477	A	T	1477.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.78;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr8	142445213	rs77995263	C	G	740.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:80,37:0.32:117
chr8	142445538	rs11785585	T	C	15179.77	.	AC=2;AF=1.00;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	1/1:0,364:1.00:364
chr8	142445540	rs143051012	T	TGCCCGCGGCCCTGGCCC	8659.73	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:3,264:0.99:267
chr8	142445557	.	CT	C	1336	.	AC=1;AF=0.500;AN=2;BRF=0.59;FR=0.5000;HP=2;HapScore=1;MGOF=182;MMLQ=24;MQ=59.9;NF=39;NR=63;PP=1336;QD=13.3529411765;SC=GGCCCTGGCCCTGCCCCTTCC;SbPval=0.8;Source=Platypus;TC=192;TCF=87;TCR=105;TR=102;WE=142445565;WS=142445547;set=Platypus	GT:AD:AF:DP	1/0:90,102:0.53:192
chr8	142445680	rs11784911	A	T	15529.77	.	AC=2;AF=1.00;AN=2;DB;DP=581;set=Intersection	GT:AD:AF:DP	1/1:2,568:1.00:570
chr8	142446923	rs11782383	C	T	3180.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr8	142451177	rs7459842	G	A	2188.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr8	142457961	rs13259488	A	C	1649.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr8	142458053	rs6578185	A	G	6835.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr8	142459814	rs7003306	C	T	2493.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr8	142477752	rs11775650	T	C	3076.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr8	142480610	rs4907398	C	T	4299.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr8	142483145	rs60130313	ACC	A	1215.73	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr8	142484366	rs33975024	A	AG	6825.73	.	AC=2;AF=1.00;AN=2;DB;DP=193;MQ=60.17;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr8	142487333	rs2247440	A	G	806.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr8	142488662	rs2613643	C	T	2526.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.32;SOR=0.823;set=HC	GT:AD:AF:DP	1/1:0,96:1.00:96
chr8	142489410	rs2748418	A	G	2831.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr8	142489981	rs2748417	C	T	4969.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr8	142490079	rs2613641	G	A	10897.77	.	AC=2;AF=1.00;AN=2;DB;DP=468;set=Intersection	GT:AD:AF:DP	1/1:6,449:0.99:455
chr8	142490120	rs2748416	G	T	10957.77	.	AC=2;AF=1.00;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	1/1:0,416:1.00:416
chr8	142505038	rs6578193	T	C	6208.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.318;ClippingRankSum=0.000;DB;DP=244;ExcessHet=3.0103;FS=3.065;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.76;ReadPosRankSum=-0.589;SOR=0.276;set=HC	GT:AD:AF:DP	1/1:1,240:1.00:241
chr8	142505056	rs2246587	TG	CT	8965.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.136;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=3.116;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=43.31;ReadPosRankSum=-0.560;SOR=0.317;set=HC	GT:AD:AF:DP	1/1:1,206:1.00:207
chr8	142505578	rs2748404	C	A	3027.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr8	142506461	rs2613637	A	G	3561.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr8	142517130	rs11355664	TG	T	3812.73	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:6,137:0.96:143
chr8	142517222	rs2748421	A	G	11764.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.23;SOR=0.771;set=HC	GT:AD:AF:DP	1/1:0,266:1.00:266
chr8	142517227	rs2613648	C	T	11643.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.61;SOR=0.748;set=HC	GT:AD:AF:DP	1/1:0,261:1.00:261
chr8	143310815	rs11167136	G	A	1521.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:124,80:0.39:204
chr8	143352978	rs11777062	T	G	3327.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr8	143353038	rs35674714	C	T	1469.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:128,80:0.38:208
chr8	143365913	rs5895710	GT	G	4925.73	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr8	143381810	rs7822013	T	C	1659.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:95,70:0.42:165
chr8	143399752	rs4514123	T	C	961.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:116,55:0.32:171
chr8	143412377	rs34722595	T	C	1283.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:128,73:0.36:201
chr8	143413136	rs10435683	C	T	3476.77	.	AC=1;AF=0.500;AN=2;DB;DP=548;set=Intersection	GT:AD:AF:DP	0/1:349,194:0.36:543
chr8	143425271	rs67990630	C	A	779.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:76,42:0.36:118
chr8	143425720	rs10100935	T	C	2372.77	.	AC=1;AF=0.500;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	0/1:246,134:0.35:380
chr8	143425854	rs12156381	G	A	651.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:62,33:0.35:95
chr8	143427178	rs33970858	C	G	5407.77	.	AC=1;AF=0.500;AN=2;DB;DP=847;set=Intersection	GT:AD:AF:DP	0/1:532,296:0.36:828
chr8	143436034	rs7814359	A	G	2439.77	.	AC=1;AF=0.500;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	0/1:283,134:0.32:417
chr8	143447503	rs7388487	C	T	413.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:31,19:0.38:50
chr8	143559431	rs10481394	T	C	2206.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr8	143560504	rs13279697	A	G	1739.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr8	143560555	rs13252518	T	C	2867.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr8	143560895	rs12682337	G	A	2603.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.13;SOR=1.773;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr8	143560898	rs12680973	T	C	2653.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.23;SOR=1.688;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr8	143560996	rs66517676	AGCCAGCT	A	11408.73	.	AC=2;AF=1.00;AN=2;DB;DP=260;MQ=60.12;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr8	143561206	rs4509377	G	A	4252.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr8	143563087	rs11782438	C	G	5055.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr8	143563161	rs11776057	G	A	1706.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr8	143570281	rs73714305	G	A	3316.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr8	143570921	rs7825551	A	G	12204.77	.	AC=2;AF=1.00;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	1/1:0,439:1.00:439
chr8	143599631	rs13281622	A	G	9371.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.902;ClippingRankSum=0.000;DB;DP=355;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.70;ReadPosRankSum=-0.109;SOR=1.185;set=HC	GT:AD:AF:DP	1/1:2,349:0.99:351
chr8	143599634	rs13254098	T	G	15467.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.03;QD=44.83;SOR=1.206;set=HC	GT:AD:AF:DP	1/1:0,345:1.00:345
chr8	143599651	rs13281652	A	C	8239.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr8	143599665	rs13254123	T	C	7076.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;MQ=60.04;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr8	143599704	rs13281694	A	C	3063.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr8	143599716	rs13278828	G	C	2230.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr8	143599734	rs13281922	A	C	1741.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr8	143599746	rs13281935	A	C	1786.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.25;QD=42.54;SOR=6.091;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr8	143599753	rs13281945	A	C	1681.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.27;QD=44.26;SOR=5.892;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr8	143603269	rs7463713	A	G	1106.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr8	143603318	rs7462471	C	T	2168.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr8	143603418	rs7460600	G	C	4519.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr8	143605718	.	T	G	2054.77	.	AC=1;AF=0.500;AN=2;DP=144;set=Intersection	GT:AD:AF:DP	0/1:51,84:0.62:135
chr8	143695144	rs2234911	G	A	6805.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr8	143695678	rs28403912	A	G	1610.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.53;SOR=1.432;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr8	143695681	rs28641083	G	C	1546.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.19;SOR=1.308;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr8	143696749	rs28660666	G	A	4260.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.98;SOR=0.934;set=HC	GT:AD:AF:DP	1/1:0,164:1.00:164
chr8	143746087	rs33951456	CCA	C	18248.73	.	AC=2;AF=1.00;AN=2;DB;DP=473;set=Intersection	GT:AD:AF:DP	1/1:0,455:1.00:455
chr8	143762724	rs2976391	C	A	2432.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr8	143781858	rs1048831	G	A	2394.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:1,84:0.99:85
chr8	143782044	rs2585174	A	G	11986.77	.	AC=2;AF=1.00;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	1/1:0,445:1.00:445
chr8	143783240	rs10564411	CT	C	215.25	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:3,16:0.84:19
chr8	143784500	rs2244163	T	G	5645.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:1,193:0.99:194
chr8	143808667	rs2257796	T	C	640.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr8	143808951	rs2585138	C	T	11857.77	.	AC=2;AF=1.00;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	1/1:0,454:1.00:454
chr8	143809193	rs2257840	C	T	3222.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr8	143845950	rs2585187	A	G	4903.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.18;SOR=1.856;set=HC	GT:AD:AF:DP	1/1:0,111:1.00:111
chr8	143845953	rs2717554	T	C	5010.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.57;SOR=1.736;set=HC	GT:AD:AF:DP	1/1:0,115:1.00:115
chr8	143845982	rs1075542	T	C	2185.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:57,98:0.63:155
chr8	143849626	rs7006366	T	A	891.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.75;SOR=0.906;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr8	143857265	rs2585125	G	T	11453.77	.	AC=2;AF=1.00;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	1/1:0,428:1.00:428
chr8	143857441	rs3214637	A	AGG	4366.73	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr8	143867157	rs60714144	C	T	411.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.379;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=4.495;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.46;ReadPosRankSum=0.069;SOR=1.458;set=HC	GT:AD:AF:DP	0/1:93,26:0.22:119
chr8	143867841	rs2717607	C	G	1329.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:96,67:0.41:163
chr8	143867905	rs2572925	C	T	915.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:95,53:0.36:148
chr8	143921804	rs3750246	C	T	3252.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.507;ClippingRankSum=0.000;DB;DP=240;ExcessHet=3.0103;FS=1.652;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.96;ReadPosRankSum=0.123;SOR=0.843;set=HC	GT:AD:AF:DP	0/1:144,89:0.38:233
chr8	143921812	rs3750247	A	G	3385.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.837;ClippingRankSum=0.000;DB;DP=249;ExcessHet=3.0103;FS=1.017;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.99;ReadPosRankSum=-1.755;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:148,94:0.39:242
chr8	143922788	rs3802226	C	T	430.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:24,20:0.45:44
chr8	143956808	rs6395	A	C	103.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:47,10:0.18:57
chr8	143956925	rs6392	T	C	126.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:9,7:0.44:16
chr8	143956965	.	A	G	26	.	AC=1;AF=0.500;AN=2;BRF=0.18;FR=0.5000;HP=2;HapScore=2;MGOF=24;MMLQ=27;MQ=58.01;NF=1;NR=2;PP=26;QD=20.2570708491;SC=GATTCCAGAGAAAGAAGAGCT;SbPval=0.75;Source=Platypus;TC=8;TCF=3;TCR=5;TR=3;WE=143956973;WS=143956955;set=Platypus	GT:AD:AF:DP	0/1:5,3:0.38:8
chr8	143957405	rs6471570	A	C	1756.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.123;ClippingRankSum=0.000;DB;DP=429;ExcessHet=3.0103;FS=0.606;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.11;ReadPosRankSum=-0.904;SOR=0.792;set=HC	GT:AD:AF:DP	0/1:318,109:0.26:427
chr8	143957856	rs7822986	G	A	1092.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;MQ=59.99;set=Intersection	GT:AD:AF:DP	0/1:86,58:0.40:144
chr8	143957886	rs10105643	A	C	810.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:59,41:0.41:100
chr8	143958427	rs6387	C	T	1350.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:193,86:0.31:279
chr8	143959067	rs80101721	G	A	103.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.340;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.73;ReadPosRankSum=0.890;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:30,8:0.21:38
chr8	143959250	rs7818826	T	C	1371.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.279;ClippingRankSum=0.000;DB;DP=284;ExcessHet=3.0103;FS=2.187;MLEAC=1;MLEAF=0.500;MQ=59.68;MQRankSum=-6.485;QD=4.85;ReadPosRankSum=0.462;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:199,84:0.30:283
chr8	143959289	rs7818953	T	C	1165.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:173,70:0.29:243
chr8	143959412	rs28551743	G	A	202.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:26,11:0.30:37
chr8	143960597	rs5283	G	A	7333.77	.	AC=1;AF=0.500;AN=2;DB;DP=1159;set=Intersection	GT:AD:AF:DP	0/1:743,405:0.35:1148
chr8	143961005	rs6410	T	C	2805.77	.	AC=1;AF=0.500;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	0/1:255,146:0.36:401
chr8	143993315	rs3097	C	T	684.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:27,31:0.53:58
chr8	143993640	rs6433	C	T	200.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:37,12:0.24:49
chr8	143994321	rs6435	T	C	665.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:44,31:0.41:75
chr8	143994349	rs6397	T	C	545.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:31,25:0.45:56
chr8	143994388	rs6429	G	C	735.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.267;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=3.854;MLEAC=1;MLEAF=0.500;MQ=55.71;MQRankSum=-0.337;QD=12.47;ReadPosRankSum=1.274;SOR=1.041;set=HC	GT:AD:AF:DP	0/1:39,20:0.34:59
chr8	143994391	rs79410128	G	C	732.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.407;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=2.300;MLEAC=1;MLEAF=0.500;MQ=55.78;MQRankSum=-0.204;QD=12.21;ReadPosRankSum=0.713;SOR=0.890;set=HC	GT:AD:AF:DP	0/1:39,21:0.35:60
chr8	143994396	rs79201878	A	T	684.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.385;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=3.665;MLEAC=1;MLEAF=0.500;MQ=55.86;MQRankSum=-0.450;QD=11.23;ReadPosRankSum=0.968;SOR=1.098;set=HC	GT:AD:AF:DP	0/1:41,20:0.33:61
chr8	143994398	rs80062072	A	G	687.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.672;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=3.915;MLEAC=1;MLEAF=0.500;MQ=55.78;MQRankSum=-0.591;QD=11.46;ReadPosRankSum=1.185;SOR=1.267;set=HC	GT:AD:AF:DP	0/1:41,19:0.32:60
chr8	143994399	rs74838461	T	C	645.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.688;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=3.915;MLEAC=1;MLEAF=0.500;MQ=55.78;MQRankSum=-0.591;QD=10.76;ReadPosRankSum=1.097;SOR=1.267;set=HC	GT:AD:AF:DP	0/1:41,19:0.32:60
chr8	143994419	rs5895735	T	TG	457.73	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:41,18:0.31:59
chr8	143994427	rs6394	A	G	1789.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr8	143994702	rs4538	G	T	1198.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:102,54:0.35:156
chr8	143994944	rs13252628	T	G	5375.77	.	AC=1;AF=0.500;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	0/1:159,241:0.60:400
chr8	143994978	.	CAAA	C,CAA	11536.73	.	AC=2,0;AF=1.00,0.00;ALERT;AN=2;DP=277;set=Intersection	GT:AF:DP	1/1:1.00:259
chr8	143994981	.	AA	CG	2947	.	AC=2;AF=1.00;AN=2;BRF=0.4;FR=1.0000;HP=4;HapScore=1;MGOF=13;MMLQ=24;MQ=60.0;NF=42;NR=127;PP=2947;QD=20;SC=CCCTGAGCAAAAACAGAGCCC;SbPval=0.45;Source=Platypus;TC=176;TCF=42;TCR=134;TR=169;WE=143994990;WS=143994968;set=Platypus	GT:AD:AF:DP	1/1:7,169:0.96:176
chr8	143994982	.	A	ACG	11536.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=269;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.54;SOR=1.967;set=HC	GT:AD:AF:DP	1/1:0,259:1.00:259
chr8	143995761	rs4536	C	T	6650.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr8	143996059	rs6434	A	G	72.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:30,6:0.17:36
chr8	143996363	rs6418	A	G	2492.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.331;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=0.581;MLEAC=1;MLEAF=0.500;MQ=58.28;MQRankSum=-5.301;QD=14.93;ReadPosRankSum=1.214;SOR=0.792;set=HC	GT:AD:AF:DP	0/1:99,68:0.41:167
chr8	143996363	.	AGG	GGA	1926	.	AC=1;AF=0.500;AN=2;FR=0.5000;HP=4;HapScore=1;MGOF=1;MMLQ=24;NF=23;NR=34;PP=1926;QD=34.7275065765;SC=AGGCAGCCCCAGGCCTCCTGG;SbPval=0.82;Source=Platypus;TC=130;TCF=62;TCR=68;TR=57;WE=143996373;WS=143996353;set=Platypus	GT:AD:AF:DP	0/1:73,57:0.44:130
chr8	143996365	rs6399	G	A	2492.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.886;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=1.226;MLEAC=1;MLEAF=0.500;MQ=58.37;MQRankSum=-5.197;QD=14.93;ReadPosRankSum=1.221;SOR=0.805;set=HC	GT:AD:AF:DP	0/1:100,67:0.40:167
chr8	143996539	rs4539	T	C	2392.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:125,68:0.35:193
chr8	143996553	rs4546	G	A	2593.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:135,80:0.37:215
chr8	143997131	rs10086846	C	T	219.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr8	143997309	rs13257680	C	T	1930.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:61,89:0.59:150
chr8	143997795	rs11781816	C	T	4645.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:124,210:0.63:334
chr8	143997877	rs7461740	C	G	1257.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.347;ClippingRankSum=0.000;DB;DP=340;ExcessHet=3.0103;FS=5.046;MLEAC=1;MLEAF=0.500;MQ=59.23;MQRankSum=-4.683;QD=3.73;ReadPosRankSum=0.417;SOR=0.988;set=HC	GT:AD:AF:DP	0/1:254,83:0.25:337
chr8	143998426	rs13268153	C	T	2103.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:48,77:0.62:125
chr8	143998662	rs13276226	G	A	11334.77	.	AC=1;AF=0.500;AN=2;DB;DP=806;set=Intersection	GT:AD:AF:DP	0/1:277,509:0.65:786
chr8	144064048	rs140972957	A	AT	168.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.492;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=2.218;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.44;ReadPosRankSum=0.169;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:18,13:0.42:31
chr8	144097333	rs62525085	C	T	2610.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.86;SOR=0.712;set=HC	GT:AD:AF:DP	1/1:0,105:1.00:105
chr8	144097377	rs62525087	C	G	2252.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr8	144124512	rs11136299	T	C	1551.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:175,86:0.33:261
chr8	144124609	rs11136300	T	C	4857.77	.	AC=1;AF=0.500;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	0/1:151,227:0.60:378
chr8	144125727	rs6997455	T	A	2083.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:37,86:0.70:123
chr8	144126244	rs4612316	T	C	2563.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:69,118:0.63:187
chr8	144130550	rs12677862	C	G	2261.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:60,98:0.62:158
chr8	144162364	rs6993880	C	T	829.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:27,34:0.56:61
chr8	144239660	rs7007949	G	A	2963.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:97,133:0.58:230
chr8	144239859	rs10109061	A	G	7213.77	.	AC=1;AF=0.500;AN=2;DB;DP=537;set=Intersection	GT:AD:AF:DP	0/1:204,323:0.61:527
chr8	144240257	rs9694368	C	G	6077.77	.	AC=1;AF=0.500;AN=2;DB;DP=490;set=Intersection	GT:AD:AF:DP	0/1:201,284:0.59:485
chr8	144295154	rs61747644	C	T	1389.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:109,72:0.40:181
chr8	144295321	rs13253453	C	G	560.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr8	144295782	rs11538388	G	T	2057.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:65,98:0.60:163
chr8	144332012	rs6558339	T	C	7958.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr8	144332082	rs11136275	T	C	4276.77	.	AC=1;AF=0.500;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:119,200:0.63:319
chr8	144351394	rs7819483	A	G	722.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:81,42:0.34:123
chr8	144351632	rs6558341	A	G	11998.77	.	AC=2;AF=1.00;AN=2;DB;DP=468;set=Intersection	GT:AD:AF:DP	1/1:0,452:1.00:452
chr8	144357213	rs3817675	G	C	8988.77	.	AC=1;AF=0.500;AN=2;DB;DP=661;set=Intersection	GT:AD:AF:DP	0/1:262,391:0.60:653
chr8	144357479	rs3812433	C	G	5519.77	.	AC=1;AF=0.500;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	0/1:157,239:0.60:396
chr8	144357975	rs2293924	C	T	5434.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr8	144357992	rs2293923	A	G	2995.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:61,133:0.69:194
chr8	144358302	rs1056146	C	T	537.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:57,25:0.30:82
chr8	144358381	rs1056148	G	A	3904.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:85,161:0.65:246
chr8	144378184	rs2235115	C	G	5089.77	.	AC=1;AF=0.500;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	0/1:124,221:0.64:345
chr8	144378868	rs7386259	A	G	15025.77	.	AC=2;AF=1.00;AN=2;DB;DP=548;set=Intersection	GT:AD:AF:DP	1/1:3,542:0.99:545
chr8	144391452	rs11136285	G	A	1159.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:28,45:0.62:73
chr8	144391728	rs7386475	A	G	3375.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:99,148:0.60:247
chr8	144391796	rs10088567	G	A	1374.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:31,55:0.64:86
chr8	144391873	rs10105378	A	G	1235.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:33,52:0.61:85
chr8	144391924	rs10099789	CT	TC	5112.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.565;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=3.631;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.49;ReadPosRankSum=-0.938;SOR=0.475;set=HC	GT:AD:AF:DP	0/1:61,125:0.67:186
chr8	144391930	rs10091561	G	A	5295.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.699;ClippingRankSum=0.000;DB;DP=203;ExcessHet=3.0103;FS=2.708;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.02;ReadPosRankSum=-1.339;SOR=0.514;set=HC	GT:AD:AF:DP	0/1:61,135:0.69:196
chr8	144392368	rs2293925	G	A	2885.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:76,130:0.63:206
chr8	144397694	rs7815223	C	T	259.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:17,12:0.41:29
chr8	144397798	rs35506042	G	GGA	2722.73	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:48,72:0.60:120
chr8	144398029	rs13275896	A	G	2816.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:72,130:0.64:202
chr8	144398123	rs2293928	G	C	3853.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.038;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.77;ReadPosRankSum=-0.559;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:79,98:0.55:177
chr8	144398132	rs2293927	T	C	3974.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.422;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=1.138;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.07;ReadPosRankSum=0.330;SOR=0.791;set=HC	GT:AD:AF:DP	0/1:92,106:0.54:198
chr8	144398396	rs2293926	C	T	1217.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:33,47:0.59:80
chr8	144399856	rs3215410	TC	T	1302.73	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr8	144399885	rs2272637	A	C	1197.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.735;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=-0.878;QD=16.87;ReadPosRankSum=-2.134;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:39,32:0.45:71
chr8	144399885	.	AG	CT	986	.	AC=1;AF=0.500;AN=2;BRF=0.37;FR=0.5000;HP=2;HapScore=2;MGOF=21;MMLQ=28;MQ=60.12;NF=18;NR=7;PP=986;QD=41.5787149945;SC=GGTGTGGGGCAGGCTCACCGC;SbPval=0.41;Source=Platypus;TC=58;TCF=44;TCR=14;TR=25;WE=144399894;WS=144399875;set=Platypus	GT:AD:AF:DP	0/1:33,25:0.43:58
chr8	144399886	rs2272636	G	T	1197.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.616;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=-0.878;QD=16.87;ReadPosRankSum=-2.209;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:39,32:0.45:71
chr8	144399993	rs146827342	G	A	2095.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:109,98:0.47:207
chr8	144400036	rs11780593	C	T	2522.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:121,118:0.49:239
chr8	144400065	rs2272635	C	T	2655.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:122,124:0.50:246
chr8	144400089	rs2272634	C	T	2802.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:122,133:0.52:255
chr8	144403292	rs12680237	C	T	2317.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:60,96:0.62:156
chr8	144403485	rs11544482	G	C	2387.77	.	AC=1;AF=0.500;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	0/1:253,132:0.34:385
chr8	144406705	rs11544484	C	T	3639.77	.	AC=1;AF=0.500;AN=2;DB;DP=570;set=Intersection	GT:AD:AF:DP	0/1:369,198:0.35:567
chr8	144406881	rs12680498	G	A	3740.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:108,170:0.61:278
chr8	144408616	rs3829019	G	A	952.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:64,43:0.40:107
chr8	144409934	rs35096181	C	A	8038.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr8	144409938	rs11424162	A	AG	8090.73	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr8	144411759	rs3812436	T	C	547.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.001;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=3.153;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.67;ReadPosRankSum=-0.121;SOR=1.814;set=HC	GT:AD:AF:DP	0/1:15,16:0.52:31
chr8	144411767	rs2467894	C	A	424.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.022;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.47;ReadPosRankSum=0.299;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:12,11:0.48:23
chr8	144417051	rs2956274	A	G	2939.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr8	144425247	rs7837655	C	A	1918.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr8	144457678	rs72703712	G	A	867.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:66,44:0.40:110
chr8	144459231	.	C	CGT	365.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.228;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;FS=1.170;MLEAC=1;MLEAF=0.500;MQ=62.99;MQRankSum=3.432;QD=8.13;ReadPosRankSum=-0.634;SOR=1.029;set=HC	GT:AD:AF:DP	0/1:25,20:0.44:45
chr8	144459233	.	CG	TG	913	.	AC=1;AF=0.500;AN=2;BRF=0.44;FR=1.0000,0.5000;HP=2;HapScore=2;MGOF=8;MMLQ=24;MQ=63.98;NF=11,6;NR=11,4;PP=913,78;QD=42.4545454545;SC=TGTGTGTGCGCGTGTGTGTGT;SbPval=0.43;Source=Platypus;TC=29;TCF=16;TCR=13;TR=22,10;WE=144459241;WS=144459224;set=Platypus	GT:AD:AF:DP	0/1:23,10:0.30:33
chr8	144459233	.	CG	CGTG	913	.	AC=1;AF=0.500;AN=2;BRF=0.44;FR=1.0000,0.5000;HP=2;HapScore=2;MGOF=8;MMLQ=24;MQ=63.98;NF=11,6;NR=11,4;PP=913,78;QD=42.4545454545;SC=TGTGTGTGCGCGTGTGTGTGT;SbPval=0.43;Source=Platypus;TC=29;TCF=16;TCR=13;TR=22,10;WE=144459241;WS=144459224;set=Platypus	GT:AD:AF:DP	0/1:7,22:0.76:29
chr8	144459233	rs3889112	C	CGT,T	1470.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.250;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=3.647;MLEAC=1,1;MLEAF=0.500,0.500;MQ=63.29;MQRankSum=0.767;QD=33.43;ReadPosRankSum=1.032;SOR=0.753;set=HC	GT:AD:AF:DP	1/2:1,23,20:0.52,0.45:44
chr8	144459329	rs901760	C	T	4042.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;MQ=60.81;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr8	144460569	rs901762	G	A	2510.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr8	144462169	rs3812440	A	G	17899.77	.	AC=2;AF=1.00;AN=2;DB;DP=687;set=Intersection	GT:AD:AF:DP	1/1:0,676:1.00:676
chr8	144463267	rs13275994	C	T	4077.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr8	144463686	rs3817720	C	T	2228.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr8	144511389	rs7386685	C	G	189.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr8	144511953	.	ATGGTGG	A,ATGG	11517.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=350;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.46;QD=40.70;SOR=0.700;set=HC	GT:AD:AF:DP	1/2:0,23,260:0.08,0.92:283
chr8	144511995	rs1872900	A	G	7076.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr8	144522386	.	TGAG	T	104.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.201;ClippingRankSum=0.000;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=2.967;QD=1.09;ReadPosRankSum=-0.905;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:86,10:0.10:96
chr8	144523323	rs2294114	G	A	951.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:59,45:0.43:104
chr8	144618379	rs11774857	A	G	1007.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr8	144620183	rs4874147	T	C	6154.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr8	144620342	rs1318196	T	C	1373.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.931;ClippingRankSum=0.000;DB;DP=334;ExcessHet=3.0103;FS=1.491;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.15;ReadPosRankSum=0.172;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:243,88:0.27:331
chr8	144620855	rs4873802	C	A	4437.77	.	AC=1;AF=0.500;AN=2;DB;DP=602;set=Intersection	GT:AD:AF:DP	0/1:365,233:0.39:598
chr8	144621084	rs3750207	T	G	2460.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:207,120:0.37:327
chr8	144623735	rs2242092	G	C	837.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:71,38:0.35:109
chr8	144636949	rs7844860	T	C	4559.77	.	AC=1;AF=0.500;AN=2;DB;DP=635;set=Intersection	GT:AD:AF:DP	0/1:378,248:0.40:626
chr8	144640506	rs80346174	G	C	2632.77	.	AC=1;AF=0.500;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	0/1:266,138:0.34:404
chr8	144641159	rs59789236	G	GGTGA	273.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.324;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=3.577;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.55;ReadPosRankSum=3.413;SOR=0.342;set=HC	GT:AD:AF:DP	0/1:55,22:0.29:77
chr8	144641161	rs4292703	A	G,ACTCTGGCTGGGTTTTGCAGTGGGTCCCTGCG	3267.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=137;set=Intersection	GT:AF:DP	1/2:0.71,0.29:76
chr8	144641313	rs7840166	G	A	109.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:18,7:0.28:25
chr8	144641753	rs4874151	A	C	5568.77	.	AC=1;AF=0.500;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	0/1:146,259:0.64:405
chr8	144642178	rs11774948	T	C	6108.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr8	144642244	rs73375262	A	G	582.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:46,28:0.38:74
chr8	144642490	rs73375263	G	A	1101.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:133,64:0.32:197
chr8	144642626	rs7831485	A	G	5138.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr8	144642854	rs11551202	G	A	1569.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:150,84:0.36:234
chr8	144642986	rs11136298	T	C	3306.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:2,115:0.98:117
chr8	144643321	rs12541790	A	G	2238.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:169,108:0.39:277
chr8	144643603	rs2290414	G	A	2123.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:216,123:0.36:339
chr8	144644405	rs11551198	G	A	3198.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:57,139:0.71:196
chr8	144644583	rs1349806	G	C	1947.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:129,93:0.42:222
chr8	144644787	rs1377663	T	A	3064.77	.	AC=1;AF=0.500;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	0/1:278,159:0.36:437
chr8	144645265	rs55851711	T	TCTGG	1022.73	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:22,27:0.55:49
chr8	144649541	rs34071446	G	GC	1035.73	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:7,37:0.84:44
chr8	144649550	rs7010602	A	G	1874.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr8	144649601	rs13268196	A	G	1459.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr8	144649625	rs10097556	T	C	1535.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr8	144649690	rs13254590	C	T	359.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:37,20:0.35:57
chr8	144649968	rs13255489	C	T	868.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:92,47:0.34:139
chr8	144650503	rs13271361	G	A	883.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:81,44:0.35:125
chr8	144650550	rs10101426	T	C	1987.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr8	144650925	rs13279011	A	T	405.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.628;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=1.909;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.61;ReadPosRankSum=-1.598;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:6,20:0.77:26
chr8	144651554	rs6983410	A	G	556.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr8	144651576	rs7013931	C	G	729.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr8	144652281	rs11990325	T	A	2287.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:184,111:0.38:295
chr8	144652595	rs200070927	G	GGCAGTGGGA	3823.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.794;ClippingRankSum=0.000;DB;DP=414;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.54;ReadPosRankSum=0.624;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:295,106:0.26:401
chr8	144652599	.	A	AGAGGG	4082.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=8.115;ClippingRankSum=0.000;DP=407;ExcessHet=3.0103;FS=0.588;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.13;ReadPosRankSum=-0.385;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:293,110:0.27:403
chr8	144652600	.	C	G	4099.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=6.228;ClippingRankSum=0.000;DP=410;ExcessHet=3.0103;FS=1.251;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.10;ReadPosRankSum=-0.447;SOR=0.819;set=HC	GT:AD:AF:DP	0/1:295,111:0.27:406
chr8	144653011	rs11777527	C	T	1328.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.83;SOR=6.184;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr8	144653218	rs4874152	A	G	887.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr8	144654249	rs10866911	G	A	4611.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.766;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=3.241;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.94;ReadPosRankSum=-0.719;SOR=0.895;set=HC	GT:AD:AF:DP	0/1:83,118:0.59:201
chr8	144654255	rs4874153	A	G	4632.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.042;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=4.025;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.71;ReadPosRankSum=0.231;SOR=0.802;set=HC	GT:AD:AF:DP	0/1:86,118:0.58:204
chr8	144654582	rs4874154	C	A	5589.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.113;ClippingRankSum=0.000;DB;DP=399;ExcessHet=3.0103;FS=1.727;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.000;QD=14.12;ReadPosRankSum=0.349;SOR=0.798;set=HC	GT:AD:AF:DP	0/1:135,261:0.66:396
chr8	144654586	rs4874155	G	C	15435.77	.	AC=2;AF=1.00;AN=2;DB;DP=394;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.95;QD=39.48;SOR=0.740;set=HC	GT:AD:AF:DP	1/1:0,391:1.00:391
chr8	144654594	rs4873803	G	T	5538.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.366;ClippingRankSum=0.000;DB;DP=396;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.000;QD=14.09;ReadPosRankSum=-0.366;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:131,262:0.67:393
chr8	144654693	rs4873804	G	C	5091.77	.	AC=1;AF=0.500;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	0/1:118,233:0.66:351
chr8	144657269	rs2290417	G	C	3145.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:79,144:0.65:223
chr8	144657801	rs9771743	G	A	954.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:93,55:0.37:148
chr8	144658711	rs872935	G	A	4907.77	.	AC=1;AF=0.500;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	0/1:132,220:0.62:352
chr8	144659608	rs12678314	A	G	1114.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:20,43:0.68:63
chr8	144660046	rs896954	G	A	3370.77	.	AC=1;AF=0.500;AN=2;DB;DP=579;set=Intersection	GT:AD:AF:DP	0/1:381,191:0.33:572
chr8	144660189	rs896953	A	G	1635.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.062;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=0.725;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.61;ReadPosRankSum=-0.747;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:44,68:0.61:112
chr8	144660523	rs4475500	A	G	2026.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr8	144662353	rs1062391	G	A	1745.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:41,77:0.65:118
chr8	144668590	rs11780087	T	C	39.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr8	144671244	rs4874160	C	A	4369.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr8	144671685	rs6985081	G	C	12056.77	.	AC=2;AF=1.00;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	1/1:0,430:1.00:430
chr8	144671922	rs3812448	G	A	9677.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:0,357:1.00:357
chr8	144672541	rs751932	T	C	1295.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr8	144680857	rs141914327	G	A	1542.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:62,72:0.54:134
chr8	144681777	rs10282929	G	T	5199.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr8	144688736	rs2242090	C	G	4308.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:92,197:0.68:289
chr8	144689146	rs2242089	C	T	2543.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:191,138:0.42:329
chr8	144689588	rs7818082	G	A	1750.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:82,80:0.49:162
chr8	144689686	rs4874169	A	G	12958.77	.	AC=2;AF=1.00;AN=2;DB;DP=511;set=Intersection	GT:AD:AF:DP	1/1:2,500:1.00:502
chr8	144689914	rs11136305	C	T	3299.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:81,135:0.62:216
chr8	144689932	rs34360518	CACAT	C	5544.73	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:74,140:0.65:214
chr8	144690014	rs4874170	T	C	23287.77	.	AC=2;AF=1.00;AN=2;DB;DP=838;set=Intersection	GT:AD:AF:DP	1/1:0,835:1.00:835
chr8	144690886	rs10097337	A	C	1138.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:33,47:0.59:80
chr8	144695566	rs75004647	C	T	4102.77	.	AC=1;AF=0.500;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	0/1:145,189:0.57:334
chr8	144695867	rs6558377	A	G	8154.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr8	144696203	rs4634659	T	C	748.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:54,33:0.38:87
chr8	144697041	rs1049832	A	G	1872.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:182,101:0.36:283
chr8	144732026	rs3750203	G	A	1051.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:41,49:0.54:90
chr8	144732363	rs4875017	T	C	8425.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chr8	144732418	rs4874084	A	G	7522.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr8	144772151	rs35228840	TG	T	2194.73	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:54,87:0.62:141
chr8	144774079	rs11136313	G	T	1416.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.584;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.83;ReadPosRankSum=2.134;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:31,37:0.54:68
chr8	144774089	rs11136314	A	C	1610.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.213;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.926;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.39;ReadPosRankSum=0.620;SOR=0.929;set=HC	GT:AD:AF:DP	0/1:35,44:0.56:79
chr8	144774233	rs11785723	T	C	3547.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:115,165:0.59:280
chr8	144775871	rs6987308	C	A	7368.77	.	AC=1;AF=0.500;AN=2;DB;DP=558;set=Intersection	GT:AD:AF:DP	0/1:212,335:0.61:547
chr8	144776109	rs11786757	A	G	7423.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr8	144776713	rs7464270	A	C	4893.77	.	AC=1;AF=0.500;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	0/1:115,228:0.66:343
chr8	144800004	rs12543136	G	A	1817.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:42,79:0.65:121
chr8	144800552	rs6997797	C	T	4047.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr8	144801347	rs5895782	AC	A	2840.73	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr8	144801681	rs11778657	G	A	733.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:17,28:0.62:45
chr8	144802735	rs6420190	AG	CC	5309.77	.	AC=1;AF=0.500;AN=2;DB;DP=390;JOINED;set=Intersection	GT:AD:AF:DP	0/1:242,143:0.37:385
chr8	144803616	rs11783357	C	T	9267.77	.	AC=1;AF=0.500;AN=2;DB;DP=700;set=Intersection	GT:AD:AF:DP	0/1:278,408:0.59:686
chr8	144808003	rs4875045	G	C	2129.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr8	144808747	rs11136321	G	A	7148.77	.	AC=1;AF=0.500;AN=2;DB;DP=552;set=Intersection	GT:AD:AF:DP	0/1:222,327:0.60:549
chr8	144809804	rs13254035	G	A	3780.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr8	144810970	rs11136322	C	G	2147.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:57,91:0.61:148
chr8	144811278	rs9969456	G	A	2992.77	.	AC=1;AF=0.500;AN=2;DB;DP=474;set=Intersection	GT:AD:AF:DP	0/1:290,173:0.37:463
chr8	144811338	rs9969600	C	G	9536.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:0,343:1.00:343
chr8	144818311	rs11463418	A	AT	288.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.145;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=5.475;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=0.000;QD=3.70;ReadPosRankSum=1.766;SOR=2.556;set=HC	GT:AD:AF:DP	0/1:46,32:0.41:78
chr8	144822037	rs7831467	G	T	1478.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:184,90:0.33:274
chr8	144824898	rs7463016	A	C	10604.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	1/1:0,374:1.00:374
chr8	144825035	rs4074642	T	G	6165.77	.	AC=1;AF=0.500;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	0/1:140,271:0.66:411
chr8	144825272	rs4074641	A	G	808.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:43,35:0.45:78
chr8	144825290	rs4074640	T	C	487.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:32,25:0.44:57
chr8	144873666	rs9314416	G	C	4921.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr8	144873779	rs9314417	G	A	3157.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr8	144873997	rs6982642	A	C	1973.10	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.589;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.66;ReadPosRankSum=1.051;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:8,72:0.90:80
chr8	144874000	.	C	T	443.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.495;ClippingRankSum=0.000;DP=84;ExcessHet=3.0103;FS=1.148;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.41;ReadPosRankSum=2.547;SOR=0.458;set=HC	GT:AD:AF:DP	0/1:53,29:0.35:82
chr8	144874366	rs7461245	T	C	4111.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr8	144874554	rs6991873	T	C	2383.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:1,89:0.99:90
chr8	144876159	rs7460093	G	A	2802.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:74,130:0.64:204
chr8	144877812	.	C	T	317.77	.	AC=1;AF=0.500;AN=2;DP=47;set=Intersection	GT:AD:AF:DP	0/1:27,16:0.37:43
chr8	144877835	rs34691721	G	A	486.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:12,21:0.64:33
chr8	144885580	rs13281371	A	G	4997.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr8	144885754	rs142753854	G	A	1517.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.240;ClippingRankSum=0.000;DB;DP=219;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.26;ReadPosRankSum=1.217;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:124,85:0.41:209
chr8	144886628	rs34099611	C	T	811.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:14,33:0.70:47
chr8	144887656	rs7830442	A	G	5972.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr8	144889172	rs10866915	A	G	10228.77	.	AC=2;AF=1.00;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	1/1:0,375:1.00:375
chr8	144890873	rs10098508	A	T	10254.77	.	AC=2;AF=1.00;AN=2;DB;DP=376;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.57;SOR=0.715;set=HC	GT:AD:AF:DP	1/1:0,372:1.00:372
chr8	144893084	rs6558394	G	A	7739.77	.	AC=1;AF=0.500;AN=2;DB;DP=546;set=Intersection	GT:AD:AF:DP	0/1:192,340:0.64:532
chr8	144894496	rs4875060	G	A	12750.77	.	AC=2;AF=1.00;AN=2;DB;DP=478;set=Intersection	GT:AD:AF:DP	1/1:0,474:1.00:474
chr8	144894641	rs4875061	C	T	2966.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr8	144894702	rs11404566	C	CT	2277.73	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr8	144895553	rs13251492	G	A	2759.77	.	AC=1;AF=0.500;AN=2;DB;DP=467;set=Intersection	GT:AD:AF:DP	0/1:308,154:0.33:462
chr8	144900756	rs7833632	A	G	2187.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr8	144904690	rs4875063	A	G	14526.77	.	AC=2;AF=1.00;AN=2;DB;DP=566;set=Intersection	GT:AD:AF:DP	1/1:0,554:1.00:554
chr8	144911360	rs7461986	A	G	1888.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr8	144917533	rs7465214	G	A	1239.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:41,54:0.57:95
chr8	144917790	rs11774027	A	G	3238.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:83,145:0.64:228
chr8	144940081	rs60421625	C	A	146.85	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.489;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=18.36;ReadPosRankSum=-1.534;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:1,7:0.88:8
chr8	144940117	rs4977192	C	A	768.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:25,32:0.56:57
chr8	144940222	rs6990098	A	C	13984.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.488;ClippingRankSum=0.000;DB;DP=310;ExcessHet=3.0103;FS=10.849;MLEAC=1;MLEAF=0.500;MQ=59.79;MQRankSum=-1.836;QD=45.85;ReadPosRankSum=-5.757;SOR=1.224;set=HC	GT:AD:AF:DP	0/1:98,207:0.68:305
chr8	144940230	rs7005697	G	C	15633.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.595;ClippingRankSum=0.000;DB;DP=644;ExcessHet=3.0103;FS=13.532;MLEAC=1;MLEAF=0.500;MQ=58.83;MQRankSum=-4.457;QD=24.50;ReadPosRankSum=-10.545;SOR=1.571;set=HC	GT:AD:AF:DP	0/1:107,531:0.83:638
chr8	144940300	rs4977191	G	A	15367.77	.	AC=1;AF=0.500;AN=2;DB;DP=1042;set=Intersection	GT:AD:AF:DP	0/1:412,629:0.60:1041
chr8	144941419	rs12681478	C	T	6353.77	.	AC=1;AF=0.500;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	0/1:157,272:0.63:429
chr8	144942413	rs201641573	T	C	8960.77	.	AC=1;AF=0.500;AN=2;DB;DP=642;set=Intersection	GT:AD:AF:DP	0/1:233,391:0.63:624
chr8	144942903	rs6558399	T	C	10804.77	.	AC=2;AF=1.00;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	1/1:2,391:0.99:393
chr8	144944176	rs12542653	T	C	1606.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:151,83:0.35:234
chr8	144944638	rs56118826	G	A	1544.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:129,79:0.38:208
chr8	144945191	rs12543389	T	C	2333.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:199,110:0.36:309
chr8	144945792	rs13255110	T	C	2656.77	.	AC=1;AF=0.500;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	0/1:241,135:0.36:376
chr8	144946252	rs11136330	C	T	1252.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:120,68:0.36:188
chr8	144993069	rs28455570	G	A	7241.77	.	AC=1;AF=0.500;AN=2;DB;DP=524;set=Intersection	GT:AD:AF:DP	0/1:192,328:0.63:520
chr8	144995036	.	C	T	3516.77	.	AC=1;AF=0.500;AN=2;DP=419;set=Intersection	GT:AD:AF:DP	0/1:242,166:0.41:408
chr8	145004546	rs11780911	G	A	4512.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:78,200:0.72:278
chr8	145006992	rs3135103	C	T	7815.77	.	AC=1;AF=0.500;AN=2;DB;DP=552;set=Intersection	GT:AD:AF:DP	0/1:192,351:0.65:543
chr8	145066886	rs13277282	A	G	16103.77	.	AC=2;AF=1.00;AN=2;DB;DP=564;set=Intersection	GT:AD:AF:DP	1/1:0,553:1.00:553
chr8	145106938	rs60949781	GCC	G	9777.73	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr8	145107795	rs11136253	G	A	10473.77	.	AC=2;AF=1.00;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	1/1:1,384:1.00:385
chr8	145109945	.	G	A	1103.77	.	AC=1;AF=0.500;AN=2;DP=163;set=Intersection	GT:AD:AF:DP	0/1:89,60:0.40:149
chr8	145111615	rs10107332	C	A	2679.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:76,112:0.60:188
chr8	145112398	rs117057524	G	A	1338.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.942;ClippingRankSum=0.000;DB;DP=238;ExcessHet=3.0103;FS=4.051;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.82;ReadPosRankSum=-1.976;SOR=0.463;set=HC	GT:AD:AF:DP	0/1:157,73:0.32:230
chr8	145149823	rs13256214	G	T	427.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr8	145149860	rs6984764	A	G	665.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr8	145150101	rs11541475	T	G	1378.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr8	145150832	rs7820984	A	G	7018.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr8	145151665	rs200379271	TGGCAGTGGGCATGTGGAATACTTCTCC	TCAGTGGGCATGTGGAATACTTCTCC,T	11643.73	.	AC=2,0;AF=1.00,0.00;ALERT;AN=2;DB;DP=298;set=Intersection	GT:AF:DP	1/1:1.00:260
chr8	145151668	.	CAGTGGGCATGTGGAATACTTCTCCA	C	11612.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=261;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.49;SOR=1.628;set=HC	GT:AD:AF:DP	1/1:0,261:1.00:261
chr8	145151693	.	A	C	2965	.	AC=2;AF=1.00;AN=2;BRF=0.46;FR=1.0000;HP=3;HapScore=1;MGOF=2;MMLQ=23;MQ=60.0;NF=51;NR=89;PP=2965;QD=20;SC=ATACTTCTCCACTACCCCCAG;SbPval=0.32;Source=Platypus;TC=162;TCF=53;TCR=109;TR=140;WE=145151701;WS=145151655;set=Platypus	GT:AD:AF:DP	1/1:22,140:0.86:162
chr8	145158446	rs12549149	C	T	3300.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr8	145158503	rs11136254	G	T	3330.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr8	145160646	rs11136256	T	C	8311.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr8	145161823	rs11546144	G	A	4428.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr8	145161896	rs13263342	T	C	5086.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr8	145162598	rs10091401	G	C	6089.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr8	145163414	rs4977196	C	G	3430.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr8	145163647	rs4977195	T	C	6261.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr8	145164617	rs13281660	G	T	3970.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr8	145164847	rs13250446	A	G	12348.77	.	AC=2;AF=1.00;AN=2;DB;DP=453;set=Intersection	GT:AD:AF:DP	1/1:0,451:1.00:451
chr8	145168298	rs5895787	T	TG	1420.73	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:3,52:0.95:55
chr8	145168611	rs7463214	A	G	5557.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr8	145168824	rs7836836	T	C	6577.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr8	145170440	rs12543080	A	C	3253.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr8	145170704	rs13278106	A	T	8542.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr8	145171003	rs4977193	G	C	3273.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr8	145171201	rs1132230	A	G	13984.77	.	AC=2;AF=1.00;AN=2;DB;DP=532;set=Intersection	GT:AD:AF:DP	1/1:0,526:1.00:526
chr8	145223191	rs6982878	G	A	556.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr8	145223288	rs34819224	C	T	1924.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr8	145223499	rs6558308	G	A	924.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr8	145234508	rs7842771	G	C	10816.77	.	AC=2;AF=1.00;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	1/1:0,409:1.00:409
chr8	145245631	rs6558318	T	C	2069.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr8	145245944	rs10108542	A	G	2867.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr8	145254159	rs7464776	T	C	3946.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr8	145255553	rs6558320	C	G	2018.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr8	145533330	.	G	C	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.008;ClippingRankSum=0.000;DP=124;ExcessHet=3.0103;FS=192.516;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.27;ReadPosRankSum=-4.956;SOR=6.356;set=HC	GT:AD:AF:DP	0/1:95,23:0.19:118
chr8	145536169	rs35680822	C	G	384.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:36,20:0.36:56
chr8	145537328	rs62530368	T	G	1096.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.594;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=3.961;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=0.000;QD=9.71;ReadPosRankSum=-0.230;SOR=1.634;set=HC	GT:AD:AF:DP	0/1:69,44:0.39:113
chr8	145537361	.	CCCGCCTCCCCGCG	C,CCCGCACCGCCTCCCCGCG	1545.73	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;DP=60;set=Intersection	GT:AF:DP	1/2:0.55,0.45:42
chr8	145537374	.	G	A	371.77	.	AC=1;AF=0.500;ALERT;AN=2;DP=50;set=Intersection	GT:AD:AF:DP	0/1:35,9:0.20:44
chr8	145537395	.	G	A	35	.	AC=1;AF=0.500;AN=2;BRF=0.58;FR=0.5000;HP=3;HapScore=2;MGOF=131;MMLQ=24;MQ=56.37;NF=0;NR=4;PP=35;QD=17.4428031368;SC=GCCTCCCCGCGCCGCCTCCCC;SbPval=1.0;Source=Platypus;TC=23;TCF=0;TCR=23;TR=4;WE=145537403;WS=145537385;set=Platypus	GT:AD:AF:DP	1/0:19,4:0.17:23
chr8	145540277	rs17851331	G	A	2423.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:78,113:0.59:191
chr8	145557390	.	G	C	696.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.769;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;FS=1.322;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.20;ReadPosRankSum=-0.651;SOR=1.044;set=HC	GT:AD:AF:DP	0/1:12,31:0.72:43
chr8	145557497	rs7013127	A	C	507.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:37,28:0.43:65
chr8	145625524	rs145341443	GCC	G	838.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.830;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.555;QD=26.21;ReadPosRankSum=1.490;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:1,31:0.97:32
chr8	145639320	rs736676	G	C	1614.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:201,91:0.31:292
chr8	145639521	rs4992316	T	C	606.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:54,30:0.36:84
chr8	145639726	rs2272662	T	C	1447.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:133,80:0.38:213
chr8	145640411	rs2977838	A	G	7098.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr8	145641328	rs17855765	C	T	896.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:67,43:0.39:110
chr8	145641417	rs117535951	G	A	1451.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:107,74:0.41:181
chr8	145641564	rs2280839	T	G	1803.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:192,102:0.35:294
chr8	145642002	rs2280838	C	T	1097.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:106,62:0.37:168
chr8	145651262	rs2272658	T	C	1047.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:77,51:0.40:128
chr8	145652408	rs139513541	G	GGT	2422.73	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:119,69:0.37:188
chr8	145652412	rs3929255	C	G	2322.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:111,63:0.36:174
chr8	145654794	rs3862193	G	A	361.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:16,16:0.50:32
chr8	145660833	rs1010427	G	A	565.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:85,36:0.30:121
chr8	145661320	rs2721140	G	A	2381.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:71,104:0.59:175
chr8	145661675	rs7830832	G	A	1840.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:56,83:0.60:139
chr8	145662113	rs55665465	C	T	5605.77	.	AC=1;AF=0.500;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	0/1:192,246:0.56:438
chr8	145662377	rs2242270	A	C	9623.77	.	AC=1;AF=0.500;AN=2;DB;DP=701;set=Intersection	GT:AD:AF:DP	0/1:234,454:0.66:688
chr8	145663814	rs13255086	A	G	1018.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:102,56:0.35:158
chr8	145665407	rs2229315	C	T	1575.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:124,80:0.39:204
chr8	145665516	rs2306383	T	C	10898.77	.	AC=2;AF=1.00;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	1/1:0,393:1.00:393
chr8	145665637	rs2620650	A	G	6087.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr8	145665699	rs2721188	C	T	2162.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:55,91:0.62:146
chr8	145665761	rs2229313	G	A	1100.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:118,59:0.33:177
chr8	145667405	rs2242264	C	G	3076.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr8	145668042	rs741969	G	A	1663.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:156,90:0.37:246
chr8	145668443	rs760477	G	A	3437.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:73,141:0.66:214
chr8	145668481	rs2242263	C	T	5565.77	.	AC=1;AF=0.500;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	0/1:136,250:0.65:386
chr8	145677469	rs2245052	A	G	3226.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:1,110:0.99:111
chr8	145677973	rs2256094	C	T	5924.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr8	145678020	rs1871538	C	T	3032.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr8	145687750	.	GGCC	G	83.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.364;ClippingRankSum=0.000;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=3.033;QD=0.84;ReadPosRankSum=-0.736;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:90,10:0.10:100
chr8	145689915	rs2721167	G	A	7692.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr8	145690111	rs3832555	CCTCT	C	2380.73	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr8	145690308	rs2721166	C	T	9579.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	1/1:0,361:1.00:361
chr8	145690348	rs2620644	G	A	10610.77	.	AC=2;AF=1.00;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	1/1:0,391:1.00:391
chr8	145690396	rs2620645	A	C	7856.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chr8	145692110	rs2306388	C	T	392.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr8	145692296	rs2250895	A	C	5228.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr8	145692385	rs2250891	C	T	6969.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr8	145692812	rs2250779	C	T	21104.77	.	AC=2;AF=1.00;AN=2;DB;DP=787;set=Intersection	GT:AD:AF:DP	1/1:0,771:1.00:771
chr8	145693720	rs2250657	A	G	7280.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr8	145697244	rs4925823	G	A	3248.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr8	145699601	rs2721176	T	C	2995.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr8	145723419	rs2721149	T	G	2828.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr8	145724275	rs3816732	T	C	8802.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr8	145729727	rs1063739	C	A	3666.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr8	145730330	rs2101039	G	A	16428.77	.	AC=2;AF=1.00;AN=2;DB;DP=580;set=Intersection	GT:AD:AF:DP	1/1:1,573:1.00:574
chr8	145732071	rs56010190	A	G	854.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:21,41:0.66:62
chr8	145737040	rs2279243	C	T	9546.77	.	AC=2;AF=1.00;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	1/1:54,351:0.87:405
chr8	145737285	rs4251692	T	C	3260.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.419;ClippingRankSum=0.000;DB;DP=493;ExcessHet=3.0103;FS=1.855;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.65;ReadPosRankSum=1.771;SOR=0.557;set=HC	GT:AD:AF:DP	0/1:326,164:0.33:490
chr8	145737285	.	TG	CA	1881	.	AC=1;AF=0.500;AN=2;BRF=0.42;FR=0.5000;HP=1;HapScore=1;MGOF=2;MMLQ=28;MQ=60.0;NF=59;NR=57;PP=1881;QD=16.6764471971;SC=CTGGCCTTACTGCACTCACTC;SbPval=0.38;Source=Platypus;TC=346;TCF=161;TCR=185;TR=116;WE=145737294;WS=145737275;set=Platypus	GT:AD:AF:DP	1/0:230,116:0.34:346
chr8	145737286	rs756627	G	A	15944.77	.	AC=2;AF=1.00;AN=2;DB;DP=486;set=Intersection	GT:AD:AF:DP	1/1:2,481:1.00:483
chr8	145737514	rs4244610	G	A	7786.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr8	145737636	rs4925828	A	G	16420.77	.	AC=2;AF=1.00;AN=2;DB;DP=618;set=Intersection	GT:AD:AF:DP	1/1:0,608:1.00:608
chr8	145737816	rs4251691	C	T	11468.77	.	AC=2;AF=1.00;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	1/1:4,409:0.99:413
chr8	145738581	.	TGGG	T,TG	1659.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=35.31;SOR=6.316;set=HC	GT:AD:AF:DP	1/2:0,13,34:0.28,0.72:47
chr8	145738767	rs11342077	CG	C	21333.73	.	AC=2;AF=1.00;AN=2;DB;DP=592;set=Intersection	GT:AD:AF:DP	1/1:0,574:1.00:574
chr8	145739205	.	G	A	1034	.	AC=1;AF=0.500;AN=2;BRF=0.55;FR=0.5000;HP=1;HapScore=3;MGOF=34;MMLQ=28;MQ=48.9;NF=0;NR=22;PP=1034;QD=48.5805096612;SC=CGGCGTGGGCGGTGGGGAGTG;SbPval=1.0;Source=Platypus;TC=40;TCF=14;TCR=26;TR=22;WE=145739226;WS=145739195;set=Platypus	GT:AD:AF:DP	1/0:18,22:0.55:40
chr8	145739218	.	A	G	1034	.	AC=2;AF=1.00;AN=2;BRF=0.55;FR=0.5000;HP=1;HapScore=3;MGOF=40;MMLQ=28;MQ=49.41;NF=15;NR=21;PP=1034;QD=29.6880892374;SC=GGGGAGTGAGAAGGGGTCGGC;SbPval=0.58;Source=Platypus;TC=40;TCF=17;TCR=23;TR=36;WE=145739226;WS=145739195;set=Platypus	GT:AD:AF:DP	1/1:4,36:0.90:40
chr8	145739924	rs4244611	G	A	13732.77	.	AC=2;AF=1.00;AN=2;DB;DP=534;set=Intersection	GT:AD:AF:DP	1/1:0,518:1.00:518
chr8	145741130	rs4251689	C	T	7097.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr8	145741702	rs4244612	C	G	5689.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr8	145741765	rs4244613	G	A	8249.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chr8	145742514	rs2721190	A	G	5670.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr8	145742716	rs2721189	C	A	617.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr8	145742879	rs2306386	T	C	1824.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr8	145743205	rs35667555	G	T	327.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:7,13:0.65:20
chr8	145745182	rs2721172	T	C	14787.77	.	AC=2;AF=1.00;AN=2;DB;DP=539;set=Intersection	GT:AD:AF:DP	1/1:0,536:1.00:536
chr8	145747920	rs13277542	T	G	7792.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr8	145750138	rs2721138	T	C	3465.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr8	145752900	rs11557085	C	T	1182.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr8	145754073	.	GCC	G	67.06	.	AC=1;AF=0.500;AN=2;DP=17;set=Intersection	GT:AD:AF:DP	0/1:1,3:0.75:4
chr8	145771211	rs2721161	C	G	760.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.26;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr8	145806681	rs2620647	A	G	2499.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr8	145830757	rs4541972	A	G	2688.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr8	145830894	rs5895822	CT	C	11079.73	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chr8	145931258	rs112615703	C	G	2774.77	.	AC=1;AF=0.500;AN=2;DB;DP=502;set=Intersection	GT:AD:AF:DP	0/1:336,161:0.32:497
chr8	145948440	rs61732715	T	C	2486.77	.	AC=1;AF=0.500;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	0/1:252,135:0.35:387
chr8	145999616	rs3830702	CTTT	C	6710.73	.	AC=1;AF=0.500;AN=2;DB;DP=282;MQ=60.04;set=Intersection	GT:AD:AF:DP	0/1:99,169:0.63:268
chr8	146000095	rs2958493	A	G	1163.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr8	146003567	rs2294120	A	G	7931.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:1,268:1.00:269
chr8	146005581	.	C	T	649.77	.	AC=1;AF=0.500;AN=2;DP=82;set=Intersection	GT:AD:AF:DP	0/1:46,35:0.43:81
chr8	146016869	rs11539893	T	C	1746.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:125,93:0.43:218
chr8	146028061	rs2958527	A	G	1097.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr8	146033347	rs2976653	T	C	6568.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr8	146036012	rs2953882	C	T	2617.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:67,119:0.64:186
chr8	146036234	rs2958511	A	G	1178.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr8	146054703	rs1735157	C	T	435.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:18,18:0.50:36
chr8	146056279	rs12682087	C	T	3505.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:71,159:0.69:230
chr8	146062982	rs1735165	G	A	347.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:12,16:0.57:28
chr8	146067054	rs1735169	G	A	1651.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:136,82:0.38:218
chr8	146068594	rs1735408	T	C	3180.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr8	146076708	rs1209879	C	T	2083.77	.	AC=1;AF=0.500;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	0/1:296,125:0.30:421
chr8	146105917	rs1209850	A	T	1006.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:76,49:0.39:125
chr8	146115367	rs2735906	A	G	11998.77	.	AC=2;AF=1.00;AN=2;DB;DP=444;set=Intersection	GT:AD:AF:DP	1/1:0,431:1.00:431
chr8	146221823	rs2978409	A	T	2027.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr9	214864	rs2236547	C	T	13840.77	.	AC=2;AF=1.00;AN=2;DB;DP=514;set=Intersection	GT:AD:AF:DP	1/1:0,514:1.00:514
chr9	214908	rs62533313	T	C	13501.77	.	AC=2;AF=1.00;AN=2;DB;DP=507;set=Intersection	GT:AD:AF:DP	1/1:2,504:1.00:506
chr9	215057	rs481905	T	C	4985.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr9	215269	rs636922	A	C	3387.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr9	271638	rs506121	C	T	3144.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr9	286593	rs529208	C	A	3781.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr9	289557	rs150742426	G	A	4148.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr9	316998	rs2296824	C	T	3296.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr9	317195	rs10813355	G	A	1367.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr9	317218	rs3818557	A	C	1010.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr9	325811	rs3831138	T	TC	5690.73	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr9	325817	rs2360277	T	C	5389.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr9	328006	rs2296828	T	C	3295.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr9	334337	rs10970979	A	G	4883.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr9	370244	rs913703	A	G	6530.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr9	370370	rs11515377	G	C	1858.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr9	376122	rs10973003	C	T	1088.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr9	376179	rs35724655	T	A	2869.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr9	377111	rs10814431	G	C	3970.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr9	379965	rs10758420	T	C	2969.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr9	406805	rs35423045	G	GC	606.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr9	407157	rs72543680	T	TA	721.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr9	407227	rs4741867	A	G	311.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr9	421032	rs2297079	C	G	2399.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr9	429617	rs77193342	C	T	824.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr9	429719	rs7854035	T	C	2563.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr9	441816	rs201650477	ACTCAGTGGCTC	A	1268.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr9	441952	rs1887957	G	A	3393.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:1,131:0.99:132
chr9	442030	rs1887958	C	T	3512.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:1,131:0.99:132
chr9	449798	rs10491684	G	A	1207.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr9	449956	rs12351520	C	T	1019.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr9	450060	rs10121936	A	G	215.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr9	451923	rs371042110	ATATG	A	772.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr9	451945	.	G	GCATATACA	1177.73	.	AC=2;AF=1.00;AN=2;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr9	451947	.	G	A	1186.77	.	AC=2;AF=1.00;AN=2;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.96;QD=45.64;SOR=3.098;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr9	451947	.	GTG	ATA	911	.	AC=2;AF=1.00;AN=2;BRF=0.53;FR=1.0000;HP=2;HapScore=2;MGOF=95;MMLQ=26;MQ=55.98;NF=14;NR=1;PP=911;QD=64.2978583241;SC=ATATATATGTGTGTGTGTGTA;SbPval=0.99;Source=Platypus;TC=32;TCF=22;TCR=10;TR=15;WE=451957;WS=451935;set=Platypus	GT:AD:AF:DP	1/1:17,15:0.47:32
chr9	451949	.	G	A	1140.77	.	AC=2;AF=1.00;AN=2;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.96;QD=43.88;SOR=3.098;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr9	451973	.	ATATATTTTTTTTTT	A	467.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.426;ClippingRankSum=0.000;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.42;MQRankSum=2.499;QD=11.69;ReadPosRankSum=0.167;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:16,24:0.60:40
chr9	452149	rs16909246	G	C	2675.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:2,100:0.98:102
chr9	740769	rs138751582	CT	C	1013.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.506;ClippingRankSum=0.000;DB;DP=359;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=1.301;QD=3.05;ReadPosRankSum=0.101;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:192,140:0.42:332
chr9	742342	rs10733535	A	G	3014.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr9	842315	rs56130013	AC	A	223.77	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr9	967951	rs138244811	C	CCTTTCTCT	7449.73	.	AC=2;AF=1.00;AN=2;DB;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.71;QD=44.08;SOR=0.705;set=HC	GT:AD:AF:DP	1/1:0,169:1.00:169
chr9	967981	rs279895	G	C	4947.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr9	968150	rs79358387	C	CT	1332.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr9	977312	rs148355218	T	C	1048.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr9	977556	rs279891	C	A	712.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr9	989868	rs75785779	G	C	2064.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr9	989943	rs6477419	T	C	6823.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr9	1056728	rs3824419	G	C	13346.77	.	AC=2;AF=1.00;AN=2;DB;DP=492;set=Intersection	GT:AD:AF:DP	1/1:1,487:1.00:488
chr9	1057318	rs9140	A	G	2410.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr9	2123639	rs3829070	T	C	1545.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:2,57:0.97:59
chr9	2170512	rs3793511	G	C	3143.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:2,119:0.98:121
chr9	2182062	rs2281786	A	G	1418.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr9	2622121	rs12379259	A	G	3208.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr9	2622146	.	A	ACGG	2031.73	.	AC=1;AF=0.500;AN=2;DP=137;set=Intersection	GT:AD:AF:DP	0/1:21,93:0.82:114
chr9	2622278	rs2219143	G	A	1048.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr9	2645201	rs2290465	C	G	1086.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr9	2717698	rs7029012	C	G	2151.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr9	2717922	rs10967705	C	G	6974.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr9	2811505	rs2270888	G	A	4931.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr9	2828765	rs2173904	C	G	1866.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr9	2831149	rs2292000	A	C	1436.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr9	2833267	rs10217194	T	C	1006.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr9	3228700	rs643429	A	C	70.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr9	3263224	rs633893	T	C	621.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr9	3277530	.	T	C	2573.77	.	AC=2;AF=1.00;AN=2;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr9	3855963	rs34461578	C	CA	7668.73	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:1,243:1.00:244
chr9	3879693	rs4740742	C	T	1760.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr9	3898509	rs10758532	A	T	869.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr9	3932283	rs535978	C	G	1866.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr9	3932521	rs587571	T	C	4718.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr9	4117713	rs927315	C	T	1159.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr9	4118111	rs6415788	G	T	1870.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.411;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=17.341;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=21.26;ReadPosRankSum=0.734;SOR=2.174;set=HC	GT:AD:AF:DP	1/1:3,85:0.97:88
chr9	4118208	rs806052	A	G	4048.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr9	4119049	rs13301186	C	T	135.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr9	4285986	rs10758591	G	C	7056.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr9	4298537	rs12340657	G	A	1007.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr9	4298576	rs12350099	C	G	727.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr9	4490880	rs12002726	T	C	1282.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr9	4544721	rs45518336	A	T	2820.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr9	4561374	rs10974624	C	T	5218.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr9	4561421	rs72694015	T	C	6926.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr9	4561596	rs10974625	G	A	1997.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr9	4561651	rs1805311	G	A	758.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr9	4566210	rs7022772	A	C	5066.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:1,181:0.99:182
chr9	4574022	rs12682807	A	C	2406.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr9	4576680	rs301430	T	C	3696.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr9	4576774	rs1471786	G	A	677.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr9	4646363	rs301469	C	T	824.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr9	4655915	rs7869353	G	C	610.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr9	4661749	rs143968076	T	TCCAACTGCGGTTTTGCTTCAAGG	1198.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr9	4661853	rs301489	C	T	3558.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr9	4662065	rs301488	G	A	3534.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr9	4662369	rs301487	A	C	512.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr9	4666069	rs60279350	A	ATCTT	1074.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr9	4722685	rs10758645	C	G	3144.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:2,119:0.98:121
chr9	4793254	rs841990	G	A	5861.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.17;SOR=0.907;set=HC	GT:AD:AF:DP	1/1:0,224:1.00:224
chr9	4833436	rs463578	GC	AT	961.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr9	4834034	rs466547	A	G	281.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr9	4844507	rs295259	G	T	2045.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr9	4850421	rs455864	C	G	1058.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr9	4850436	rs462480	G	T	964.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr9	4860300	rs15583	A	G	3990.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr9	5361946	.	G	C	2765.77	.	AC=2;AF=1.00;AN=2;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr9	5467955	rs2297136	G	A	2840.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr9	5557672	rs7854303	T	C	5556.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr9	5742798	rs201838674	G	GA	55.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.605;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.07;ReadPosRankSum=-0.541;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:6,5:0.45:11
chr9	5756104	rs370435478	TA	T	56.86	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.319;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=7.11;ReadPosRankSum=-0.157;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:1,7:0.88:8
chr9	5811337	.	C	CA	60.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.817;ClippingRankSum=0.000;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.51;ReadPosRankSum=-0.562;SOR=0.781;set=HC	GT:AD:AF:DP	0/1:99,19:0.16:118
chr9	5923326	rs7045445	C	T	2172.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr9	5929167	rs7029054	T	C	1779.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr9	5968416	rs3739649	A	G	7446.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr9	5969249	rs10739080	A	G	4493.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr9	5969517	rs7030731	C	T	1128.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr9	5988333	rs2291055	C	T	2732.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:9,125:0.93:134
chr9	6254555	.	TA	T	56.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.342;ClippingRankSum=0.000;DP=138;ExcessHet=3.0103;FS=1.032;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.55;ReadPosRankSum=0.925;SOR=0.942;set=HC	GT:AD:AF:DP	0/1:86,18:0.17:104
chr9	6254694	rs7857724	A	C	420.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr9	6255881	rs1332290	T	G	1994.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr9	6328947	rs3847262	T	C	3061.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr9	6330915	rs1037885	G	A	759.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr9	6468447	rs3739654	A	G	4280.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr9	6475319	rs7852539	G	A	766.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr9	6499821	rs57099869	TC	T	1817.73	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.80;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr9	6499994	rs1929929	C	T	826.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:2,33:0.94:35
chr9	6506038	rs33962342	C	T	8304.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:1,311:1.00:312
chr9	6534845	rs2282160	T	C	3033.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr9	6620483	rs34280433	CA	C	140.74	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=14.07;SOR=4.804;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr9	6874931	.	TAA	T	400.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.26;ReadPosRankSum=0.756;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:39,25:0.39:64
chr9	6984236	rs2296067	G	A	4363.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr9	6984479	rs2296068	A	G	443.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr9	6986267	rs912207	T	G	926.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:1,31:0.97:32
chr9	6990548	.	ATTT	A,AT	2036.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.345;ClippingRankSum=0.000;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.39;MQRankSum=0.301;QD=21.90;ReadPosRankSum=-1.590;SOR=0.430;set=HC	GT:AD:AF:DP	1/2:13,30,50:0.32,0.54:93
chr9	7016001	rs818883	G	T	3265.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr9	7076371	rs1570511	T	C	2077.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr9	7076463	rs1570512	G	A	5975.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:3,232:0.99:235
chr9	7076586	rs1570513	G	A	4905.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr9	7103816	rs3763651	C	T	4486.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:1,166:0.99:167
chr9	7128277	.	T	TA	76.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.767;ClippingRankSum=0.000;DP=81;ExcessHet=3.0103;FS=4.999;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.18;ReadPosRankSum=0.910;SOR=0.195;set=HC	GT:AD:AF:DP	0/1:51,14:0.22:65
chr9	7174673	rs913588	G	A	2848.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr9	7174773	rs913589	G	A	729.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr9	7798435	rs1254	C	T	2438.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr9	7798518	rs4742410	G	C	5483.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr9	8319806	rs7873084	C	T	3714.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr9	8320065	rs3739578	G	A	913.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr9	8331574	rs146237556	A	AAACTTACCATTCCTGAACTGT	4060.73	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr9	8338847	rs4016543	CAG	C	2543.73	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr9	8341018	rs35000820	TA	T	2686.73	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr9	8436703	rs1359118	C	G	3979.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr9	8437141	rs10977104	G	C	410.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.16;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr9	8451816	rs4742505	TT	AC	8948.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr9	8454566	rs7031287	T	C	5770.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr9	8525217	rs35751005	AT	A	157.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.857;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=4.161;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.92;ReadPosRankSum=0.683;SOR=0.282;set=HC	GT:AD:AF:DP	0/1:59,23:0.28:82
chr9	8526505	.	G	GA	56.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.024;ClippingRankSum=0.000;DP=134;ExcessHet=3.0103;FS=1.035;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=2.236;QD=0.44;ReadPosRankSum=-0.527;SOR=0.960;set=HC	GT:AD:AF:DP	0/1:105,23:0.18:128
chr9	12704725	rs2733832	C	T	3552.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr9	12708910	rs2733834	C	G	1580.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr9	12708958	rs147565972	T	TA	4030.73	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr9	12775861	rs139315731	T	TGGCGGCGGC	6253.73	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr9	12775889	rs3750501	A	G	4849.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr9	12821761	rs143527607	G	GAC	2321.73	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr9	12821829	rs117918593	T	C	555.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr9	13109111	rs10732331	C	T	1005.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr9	13112116	rs10809904	A	G	3933.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr9	13115422	rs2274647	T	G	1663.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr9	13125201	rs2297003	T	C	926.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr9	13136564	rs10809908	A	T	450.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr9	13147723	rs7024892	T	C	2278.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr9	13150531	rs10756457	T	C	3949.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr9	13192320	rs1331676	C	G	2825.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr9	13206106	rs368811859	TA	T	226.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.692;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=1.922;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=2.478;QD=1.84;ReadPosRankSum=0.291;SOR=0.965;set=HC	GT:AD:AF:DP	0/1:84,39:0.32:123
chr9	14113179	.	C	CA	63.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.670;ClippingRankSum=0.000;DP=90;ExcessHet=3.0103;FS=1.165;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.87;ReadPosRankSum=0.286;SOR=0.423;set=HC	GT:AD:AF:DP	0/1:58,15:0.21:73
chr9	14120655	rs6474818	A	G	2354.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr9	14149993	rs76457858	A	C	495.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr9	14155769	rs12349255	T	C	644.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr9	14306944	rs4741362	A	G	520.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr9	14313712	rs2273933	T	G	564.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr9	14618856	rs3802482	C	T	2792.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr9	14619168	rs10810187	A	G	474.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr9	14619778	rs7869707	T	C	61.98	.	AC=1;AF=0.500;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	0/1:1,3:0.75:4
chr9	14640055	rs6474849	C	T	1232.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr9	14662260	rs17215796	A	G	3743.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr9	14690419	rs10961672	T	C	1019.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr9	14690447	rs2382477	G	T	655.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr9	14737506	rs10961689	T	G	2899.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr9	14737616	rs10961690	A	G	2306.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr9	14737743	rs10511596	C	A	283.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr9	14740300	rs2270528	A	G	960.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr9	14759725	rs7045154	A	G	3365.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr9	14770658	rs17219005	G	T	2427.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr9	14774329	rs7018782	T	C	1262.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr9	14775853	rs1032474	A	G	6442.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.37;SOR=1.418;set=HC	GT:AD:AF:DP	1/1:0,142:1.00:142
chr9	14775859	rs10733289	G	A	6785.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.95;SOR=1.369;set=HC	GT:AD:AF:DP	1/1:0,158:1.00:158
chr9	14776140	rs10961700	C	T	8720.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:2,325:0.99:327
chr9	14784665	rs10810239	A	G	1445.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr9	14801687	rs10738380	T	C	2943.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr9	14841633	rs10511598	A	G	1451.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr9	14842557	rs1353223	T	C	2819.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.015;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.60;ReadPosRankSum=-1.015;SOR=1.374;set=HC	GT:AD:AF:DP	1/1:2,104:0.98:106
chr9	14846122	rs2642404	C	G	1065.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr9	14851617	rs2818940	T	C	4251.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr9	14857518	rs950738	C	G	320.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr9	14868653	rs7856810	A	T	3723.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:1,130:0.99:131
chr9	15000551	rs7029527	T	C	1665.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr9	15017223	rs2222456	G	A	408.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr9	15017273	rs10961831	C	G	1092.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr9	15183462	rs35283660	CA	C	60.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.491;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=3.352;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=1.260;QD=1.56;ReadPosRankSum=-0.355;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:27,12:0.31:39
chr9	15190494	rs475932	A	C	1118.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr9	15267981	rs552693	G	C	2296.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr9	15447361	rs3830477	A	AACT	1261.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr9	15457853	rs10756669	G	A	1191.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr9	15458080	rs35960449	A	AT	2092.73	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:13,110:0.89:123
chr9	15468414	rs34331255	CCTT	C	6178.73	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr9	15468480	rs4741507	T	C	2023.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr9	15472611	rs113876575	G	GA	39.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.610;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.69;ReadPosRankSum=1.812;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:46,12:0.21:58
chr9	15486958	rs2737828	A	T	814.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr9	15623462	rs405352	T	C	482.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.17;SOR=2.049;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr9	15623475	rs6474933	A	G	152.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr9	15678995	rs7037893	C	A	525.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr9	15695418	rs1355172	G	A	4289.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr9	15723547	rs10810436	T	C	332.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr9	15864506	rs770196	C	G	465.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr9	15864682	rs74974147	T	C	1772.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:4,73:0.95:77
chr9	15883263	rs809493	G	A	286.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr9	15922137	rs1328285	A	G	6669.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:2,252:0.99:254
chr9	15922325	rs2225181	A	T	2036.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.29;SOR=2.239;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr9	16253322	rs10733309	A	G	579.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr9	16431230	rs9298764	A	G	1049.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr9	16582890	.	GACACACACACACAC	G,GAC	3244.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.58;QD=35.66;SOR=2.103;set=HC	GT:AD:AF:DP	1/2:1,32,58:0.35,0.64:91
chr9	16664871	rs35822374	T	TG	84.25	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr9	16685539	rs7046068	T	C	9562.77	.	AC=2;AF=1.00;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	1/1:0,351:1.00:351
chr9	16699287	rs10738447	C	T	10065.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.96;SOR=0.934;set=HC	GT:AD:AF:DP	1/1:0,229:1.00:229
chr9	16699292	rs10738448	C	T	9910.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.67;SOR=0.949;set=HC	GT:AD:AF:DP	1/1:0,217:1.00:217
chr9	16727698	rs1360285	G	A	730.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr9	16738269	rs7858914	G	T	2012.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr9	16738307	rs7858709	A	C	5723.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.08;QD=44.37;SOR=1.196;set=HC	GT:AD:AF:DP	1/1:0,129:1.00:129
chr9	16738312	rs7858712	A	G	5883.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.08;QD=43.58;SOR=1.170;set=HC	GT:AD:AF:DP	1/1:0,135:1.00:135
chr9	16738338	rs35475650	GA	G	3222.73	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:4,159:0.98:163
chr9	16738556	rs4007684	C	CTTTT	1530.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr9	17309336	rs10756860	T	C	429.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr9	17309374	rs6475126	T	A	66.28	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr9	17332484	rs3084508	ATT	A	1622.73	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;QD=23.86;SOR=2.393;set=HC	GT:AD:AF:DP	1/1:9,59:0.87:68
chr9	17342383	rs1442527	C	T	3406.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr9	17342517	rs10756869	A	G	737.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr9	17366568	rs4961548	A	T	267.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.75;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr9	17394465	rs7035357	G	A	72.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr9	17394536	rs7035276	C	T	243.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr9	17394996	rs3739489	T	C	7532.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr9	17395108	rs3739488	C	T	2841.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr9	17409366	rs2780211	G	A	3634.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr9	17409556	rs2584549	C	T	561.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr9	17457512	rs35399020	TA	T	868.73	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr9	17464402	rs1442532	G	C	504.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr9	17494911	rs2499057	G	A	251.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.89;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr9	17494947	rs2499058	G	A	455.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr9	17579190	rs4961573	C	G	6309.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.75;SOR=1.069;set=HC	GT:AD:AF:DP	1/1:0,141:1.00:141
chr9	17579198	rs4961574	T	G	6598.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.41;SOR=1.056;set=HC	GT:AD:AF:DP	1/1:0,152:1.00:152
chr9	17579370	rs3739487	T	C	2731.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr9	17747227	rs117253426	A	G	1104.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr9	17747279	rs2031456	G	A	430.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.90;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr9	17747288	rs41298153	C	G	324.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.60;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr9	17775367	rs2209429	C	T	2224.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr9	17787211	rs76848751	G	A	407.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr9	18573360	rs13299349	G	A	4228.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr9	18573918	rs13300372	G	C	628.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr9	18574406	rs1341069	G	C	933.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr9	18681696	rs66675938	G	GTGTTGGGA	429.73	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=53.72;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr9	18681821	rs13293151	A	G	4231.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:2,163:0.99:165
chr9	18681880	rs150468859	C	A	5514.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr9	18717903	rs530120	G	A	555.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr9	18718139	rs532101	C	G	4886.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr9	18721748	rs539785	T	G	1818.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr9	18776740	rs1549985	A	T	1588.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.98;SOR=2.259;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr9	18776840	rs1549986	A	C	6083.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr9	18777368	rs7033684	T	C	8358.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr9	18817246	rs1433809	A	C	3295.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr9	18817372	rs7873880	C	T	669.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr9	18826261	rs35525189	GT	G	2314.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.849;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=2.589;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=0.838;QD=12.72;ReadPosRankSum=0.307;SOR=0.887;set=HC	GT:AD:AF:DP	0/1:31,151:0.83:182
chr9	18826500	rs934469	T	C	2017.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr9	18830087	rs7026429	G	A	2490.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr9	18887753	rs731370	C	A	1648.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr9	18890446	rs7026374	A	G	3215.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr9	18890719	rs138297620	A	AC	1067.86	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:5,44:0.90:49
chr9	18907049	rs5896821	A	AT	4743.73	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr9	18907122	rs1327506	T	C	1669.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr9	18950787	rs6475273	G	A	2582.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr9	18950895	rs7021572	T	C	1086.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr9	18950980	rs6475274	A	T	263.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr9	19033058	rs10963922	C	A	1636.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr9	19063108	rs13302748	T	C	1106.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr9	19076673	rs13286328	G	C	990.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr9	19123745	rs10963972	A	G	1154.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr9	19126476	rs3802335	C	T	418.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr9	19295941	rs10757051	A	G	1014.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr9	19298259	rs16937435	C	T	1544.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:1,55:0.98:56
chr9	19299209	.	CT	C	116.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.321;ClippingRankSum=0.000;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.95;ReadPosRankSum=1.150;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:41,19:0.32:60
chr9	19326053	rs2256093	G	T	4156.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:1,152:0.99:153
chr9	19327897	rs34023524	T	C	297.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr9	19336169	rs10683145	G	GTA,GTATA	596.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=20;set=Intersection	GT:AF:DP	1/1:0.95:19
chr9	19341045	rs928128	A	G	3244.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:2,130:0.98:132
chr9	19347204	rs2666801	T	C	542.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr9	19350980	rs2803125	C	G	789.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr9	19352260	rs10114039	A	T	1347.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr9	19357230	rs36178701	C	G	2240.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:1,80:0.99:81
chr9	19357276	rs10667709	C	CTTA	1233.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:1,29:0.97:30
chr9	19360566	rs75572195	GT	AC	1591.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.22;SOR=3.797;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr9	19360570	rs35304654	C	T	1591.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.22;SOR=3.797;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr9	19369764	rs151013945	C	CA	299.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.517;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=4.847;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=0.819;QD=9.08;ReadPosRankSum=-1.087;SOR=2.093;set=HC	GT:AD:AF:DP	0/1:12,21:0.64:33
chr9	19370108	rs10114375	G	T	1128.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr9	19379367	rs957	G	A	6525.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr9	19409206	rs11792865	G	C	3416.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:2,133:0.99:135
chr9	19435162	rs10964137	T	C	3329.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr9	19619509	rs1885220	C	T	2589.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr9	19622072	rs4977307	A	G	933.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr9	19622268	rs4977308	T	C	3439.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr9	19622380	.	A	C	980.77	.	AC=2;AF=1.00;AN=2;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr9	20346377	rs66943046	C	CA	380.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.86;ReadPosRankSum=-0.672;SOR=0.741;set=HC	GT:AD:AF:DP	1/1:3,21:0.88:24
chr9	20346393	.	C	CA	55.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.621;ClippingRankSum=0.000;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.14;ReadPosRankSum=-0.768;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:38,11:0.22:49
chr9	20414310	.	ACTG	A	108.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.279;ClippingRankSum=0.000;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.11;ReadPosRankSum=-0.365;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:88,10:0.10:98
chr9	20414376	rs373338988	ACTG	A	115.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.558;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=2.809;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.19;ReadPosRankSum=-3.781;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:86,11:0.11:97
chr9	20448058	.	G	GT	127.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.032;ClippingRankSum=0.000;DP=118;ExcessHet=3.0103;FS=1.953;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.09;ReadPosRankSum=-1.773;SOR=0.946;set=HC	GT:AD:AF:DP	0/1:94,23:0.20:117
chr9	20502090	.	AAG	A	60.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.579;ClippingRankSum=-0.000;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.68;ReadPosRankSum=-2.189;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr9	20621901	rs376536186	CGT	C	237.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.908;ClippingRankSum=0.000;DB;DP=235;ExcessHet=3.0103;FS=0.824;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=2.425;QD=1.28;ReadPosRankSum=-1.743;SOR=0.556;set=HC	GT:AD:AF:DP	0/1:161,25:0.13:186
chr9	20622064	.	C	CGG	368.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.253;ClippingRankSum=-0.000;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=-0.000;QD=33.52;ReadPosRankSum=-0.385;SOR=3.258;set=HC	GT:AD:AF:DP	0/1:1,10:0.91:11
chr9	20720599	rs4977898	A	C	1790.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:1,65:0.98:66
chr9	20740433	rs17685673	A	T	266.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr9	20764870	rs10511687	T	C	4300.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr9	20765097	rs7871811	A	G	5138.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr9	20778631	rs7875153	A	G	3473.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr9	20866974	rs7875872	C	G	5482.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr9	20923518	rs7044425	C	G	149.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr9	20923579	rs7044452	C	T	317.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr9	20953049	rs3206852	A	G	5952.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr9	20978306	rs10811445	A	G	2608.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.22;SOR=2.342;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr9	20978312	rs4977616	A	G	2675.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.87;SOR=2.419;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr9	20982328	rs10964782	T	G	3451.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr9	20982503	rs4304410	T	G	2701.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr9	20988426	rs4977881	A	G	5925.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr9	20993461	rs4497056	T	G	1644.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr9	21007935	rs7041474	A	G	495.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr9	21026540	rs2275889	G	T	2669.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr9	21026800	rs2275890	G	A	1507.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr9	21031471	rs10964804	C	A	425.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.58;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr9	21031479	rs10964805	C	T	425.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.71;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr9	21815589	rs59294842	T	TAAA	295.75	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.902;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.77;MQRankSum=0.000;QD=22.75;ReadPosRankSum=0.297;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:2,11:0.85:13
chr9	21968159	rs3088440	G	A	1853.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:2,72:0.97:74
chr9	21968199	rs11515	C	G	1605.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr9	21968243	.	T	A	1509.77	.	AC=2;AF=1.00;AN=2;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr9	22029445	rs10965215	G	A	8314.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:1,311:1.00:312
chr9	22447655	rs558612	T	A	1257.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr9	22452041	rs56665855	GTT	G	975.73	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:3,34:0.92:37
chr9	23731179	.	T	G	3921.77	.	AC=2;AF=1.00;AN=2;DP=144;set=Intersection	GT:AD:AF:DP	1/1:2,142:0.99:144
chr9	24545513	rs6475797	G	A	4185.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr9	25677698	rs72631815	A	C	1955.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:2,69:0.97:71
chr9	25677933	rs35110225	T	C	7454.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr9	25677953	rs34498078	T	C	6333.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr9	25678122	rs72631814	G	C	7454.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr9	26116016	rs10116592	G	A	9230.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	1/1:1,341:1.00:342
chr9	26116150	rs7019716	G	T	10922.77	.	AC=2;AF=1.00;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	1/1:1,408:1.00:409
chr9	27009239	rs55784401	C	T	1017.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr9	27061142	.	GGT	G	76	.	AC=1;AF=0.500;AN=2;BRF=0.39;FR=0.5000;HP=1;HapScore=3;MGOF=9;MMLQ=23;MQ=59.44;NF=0;NR=6;PP=76;QD=13.3333333333;SC=GTAGTTAAGAGGTGTGTGTGT;SbPval=1.0;Source=Platypus;TC=24;TCF=1;TCR=23;TR=6;WE=27061151;WS=27061132;set=Platypus	GT:AD:AF:DP	1/0:18,6:0.25:24
chr9	27172838	rs3739542	C	A	1164.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr9	27173180	rs666478	C	T	3098.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:2,119:0.98:121
chr9	27183463	rs682632	A	C	3713.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:1,142:0.99:143
chr9	27185762	rs17834811	T	G	388.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr9	27192036	rs2224529	A	G	1847.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr9	27192330	rs2252883	G	A	1594.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr9	27202870	rs639225	A	G	7545.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr9	27203134	rs638203	A	G	4435.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:1,160:0.99:161
chr9	27213580	rs3737188	T	C	6762.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:4,264:0.99:268
chr9	27217516	rs5897224	CTGTT	C	1804.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr9	27217522	rs5004610	G	A	1813.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr9	27217783	rs111512563	A	AT	1128.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr9	27217810	rs2275083	C	T	945.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr9	27217822	rs681754	G	A	781.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr9	27217851	rs681707	G	C	485.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr9	27218715	rs10121367	C	A	2140.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr9	27218726	rs667250	C	T	2242.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr9	27218960	rs12337434	A	T	770.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr9	27220066	rs2273719	G	A	2272.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr9	27228022	rs2273717	A	G	517.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr9	27229141	rs2273715	T	C	8721.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,327:1.00:327
chr9	27289536	rs3739538	A	G	1127.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.11;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr9	27289545	rs3739537	G	T	1070.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.60;QD=41.18;SOR=1.697;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr9	27289832	rs1980660	G	T	669.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr9	27290984	rs2383724	T	C	1827.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.39;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr9	27291133	rs57396932	G	T	833.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr9	27291140	rs59009836	C	CATTT	824.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr9	27291192	rs35677322	C	CT	354.74	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr9	27291195	rs3739536	T	C	363.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr9	27292279	rs3739534	G	A	385.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr9	27296595	rs7044345	C	G	612.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr9	27297260	rs7875090	A	T	367.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr9	27455095	rs12379154	G	C	2041.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr9	27455135	rs34959338	G	A	3803.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr9	27455584	rs62542376	CG	GA	813.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;JOINED;set=Intersection	GT:AD:AF:DP	1/1:2,32:0.94:34
chr9	27524731	rs700785	A	G	6131.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr9	27561465	rs3063748	A	ATGT	1074.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr9	27562352	rs2589050	T	C	984.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr9	28863459	rs13285849	A	T	1589.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr9	28889060	rs7043805	C	G	606.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr9	32384843	rs913762	A	C	2202.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr9	32418237	rs2026739	G	T	3490.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr9	32425910	rs3780473	A	G	10858.77	.	AC=2;AF=1.00;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	1/1:2,406:1.00:408
chr9	32427600	rs2375965	A	G	585.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr9	32431931	rs10970975	A	G	686.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr9	32435978	rs2068116	C	T	6243.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr9	32436014	rs7022554	A	G	10448.77	.	AC=2;AF=1.00;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	1/1:1,382:1.00:383
chr9	32448745	rs10813817	T	C	584.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr9	32450187	rs12985	T	C	643.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:1,25:0.96:26
chr9	32459450	rs3205166	T	G	4305.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr9	32466184	rs2274864	G	A	2535.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr9	32485288	rs71302893	C	CA	3956.73	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:30,210:0.88:240
chr9	32488237	rs10813825	G	C	1734.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr9	32491240	rs6476363	C	T	2509.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:1,96:0.99:97
chr9	32498291	rs2777725	A	G	2739.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr9	32525969	rs2777729	C	A	1848.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:1,70:0.99:71
chr9	32526146	rs10813831	G	A	2447.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr9	32526233	rs3739674	G	C	553.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr9	32541532	rs12348918	A	G	5073.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr9	32552164	rs35002468	T	TCTC	3031.73	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.16;QD=46.64;SOR=1.646;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr9	32552172	.	CAA	C	257.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.502;ClippingRankSum=0.000;DP=92;ExcessHet=3.0103;FS=1.186;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.07;ReadPosRankSum=2.029;SOR=1.041;set=HC	GT:AD:AF:DP	0/1:63,21:0.25:84
chr9	32559114	rs10813835	C	T	64.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr9	32630472	rs10758145	T	C	6689.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:2,245:0.99:247
chr9	32631369	rs10971047	C	T	4463.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:2,169:0.99:171
chr9	32784838	rs1810807	T	C	3380.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr9	32973709	rs34659850	CA	C	755.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.224;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=0.516;QD=15.11;ReadPosRankSum=1.143;SOR=0.368;set=HC	GT:AD:AF:DP	1/1:3,47:0.94:50
chr9	32974372	rs4878522	C	T	1681.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr9	32974570	rs34600530	G	GA	689.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr9	33116238	rs34433922	AT	A	687.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.921;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.20;MQRankSum=0.359;QD=17.19;ReadPosRankSum=1.480;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:2,38:0.95:40
chr9	33264540	rs1071545	C	G	2348.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr9	33270479	rs844239	A	G	477.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr9	33270748	rs831271	G	T	1650.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:1,62:0.98:63
chr9	33290532	rs830576	A	G	8703.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr9	33290688	rs4879682	G	C	4247.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr9	33338476	.	G	GT	56.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.252;ClippingRankSum=0.000;DP=156;ExcessHet=3.0103;FS=4.533;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=0.38;ReadPosRankSum=-0.159;SOR=0.326;set=HC	GT:AD:AF:DP	0/1:127,23:0.15:150
chr9	33344252	rs642157	T	A	2016.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr9	33385600	rs117066088	G	A	160.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.793;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=4.349;MLEAC=1;MLEAF=0.500;MQ=57.79;MQRankSum=-5.009;QD=5.95;ReadPosRankSum=0.263;SOR=0.175;set=HC	GT:AD:AF:DP	0/1:21,6:0.22:27
chr9	33385602	rs145413647	AC	CT	160.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.367;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=4.349;JOINED;MLEAC=1;MLEAF=0.500;MQ=57.79;MQRankSum=-5.009;QD=5.95;ReadPosRankSum=0.350;SOR=0.175;set=HC	GT:AD:AF:DP	0/1:21,6:0.22:27
chr9	33385690	rs139024279	G	T	46.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.041;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.66;MQRankSum=-8.209;QD=0.54;ReadPosRankSum=-0.346;SOR=0.535;set=HC	GT:AD:AF:DP	0/1:79,8:0.09:87
chr9	33385698	rs145516206	A	G	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.301;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.77;MQRankSum=-8.592;QD=0.33;ReadPosRankSum=-0.969;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:87,8:0.08:95
chr9	33385852	rs202183465	C	T	109.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:22,9:0.29:31
chr9	33385863	rs62542746	G	T	217.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:15,13:0.46:28
chr9	33386053	.	A	G	235	.	AC=1;AF=0.500;AN=2;BRF=0.28;FR=0.5000;HP=3;HapScore=3;MGOF=18;MMLQ=28;MQ=53.94;NF=5;NR=0;PP=235;QD=53.9542425094;SC=AGGGGGAGGGATACTCATCCT;SbPval=1.0;Source=Platypus;TC=21;TCF=21;TCR=0;TR=5;WE=33386072;WS=33386051;set=Platypus	GT:AD:AF:DP	0/1:16,5:0.24:21
chr9	33386064	.	C	G	235	.	AC=1;AF=0.500;AN=2;BRF=0.28;FR=0.5000;HP=1;HapScore=3;MGOF=18;MMLQ=26;MQ=53.99;NF=7;NR=0;PP=235;QD=38.5387446496;SC=TACTCATCCTCGACCACTGAC;SbPval=1.0;Source=Platypus;TC=27;TCF=26;TCR=1;TR=7;WE=33386072;WS=33386051;set=Platypus	GT:AD:AF:DP	0/1:20,7:0.26:27
chr9	33386144	.	G	A	1184.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.810;ClippingRankSum=0.000;DP=150;ExcessHet=3.0103;FS=14.935;MLEAC=1;MLEAF=0.500;MQ=56.77;MQRankSum=-10.956;QD=7.95;ReadPosRankSum=-0.910;SOR=1.906;set=HC	GT:AD:AF:DP	0/1:113,36:0.24:149
chr9	33386144	.	GAC	AAA	1037	.	AC=1;AF=0.500;AN=2;BRF=0.54;FR=0.5000;HP=1;HapScore=1;MGOF=20;MMLQ=26;MQ=55.65;NF=23;NR=5;PP=1037;QD=38.9452812451;SC=CAGCTGTAGCGACGGGACCGG;SbPval=0.98;Source=Platypus;TC=96;TCF=60;TCR=36;TR=28;WE=33386154;WS=33386134;set=Platypus	GT:AD:AF:DP	1/0:68,28:0.29:96
chr9	33386146	rs76608797	C	A	1184.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.899;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=18.564;MLEAC=1;MLEAF=0.500;MQ=56.92;MQRankSum=-10.844;QD=7.59;ReadPosRankSum=-0.859;SOR=2.066;set=HC	GT:AD:AF:DP	0/1:118,38:0.24:156
chr9	33386167	rs79172651	G	C	1729.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:148,89:0.38:237
chr9	33386211	rs80148578	G	A	3115.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:170,158:0.48:328
chr9	33386226	rs78244036	T	C	3473.77	.	AC=1;AF=0.500;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	0/1:162,172:0.51:334
chr9	33386243	rs76705820	C	T	3130.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:157,159:0.50:316
chr9	33386284	rs73478964	T	G	2625.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:101,120:0.54:221
chr9	33386378	rs74462413	C	T	672.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.742;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=30.823;MLEAC=1;MLEAF=0.500;MQ=54.69;MQRankSum=-5.458;QD=7.48;ReadPosRankSum=1.253;SOR=3.912;set=HC	GT:AD:AF:DP	0/1:68,22:0.24:90
chr9	33386387	rs77429065	G	A	657.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.335;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=30.070;MLEAC=1;MLEAF=0.500;MQ=54.98;MQRankSum=-5.940;QD=6.92;ReadPosRankSum=0.878;SOR=3.714;set=HC	GT:AD:AF:DP	0/1:74,21:0.22:95
chr9	33386393	rs77837642	G	C	567.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.990;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=27.440;MLEAC=1;MLEAF=0.500;MQ=55.14;MQRankSum=-6.665;QD=5.79;ReadPosRankSum=1.571;SOR=3.563;set=HC	GT:AD:AF:DP	0/1:79,19:0.19:98
chr9	33386395	rs2484931	T	C	3072.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr9	33386399	.	CA	TG	465.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.818;ClippingRankSum=0.000;DP=104;ExcessHet=3.0103;FS=28.189;JOINED;MLEAC=1;MLEAF=0.500;MQ=55.38;MQRankSum=-7.179;QD=4.52;ReadPosRankSum=1.709;SOR=3.496;set=HC	GT:AD:AF:DP	0/1:85,18:0.17:103
chr9	33386430	rs74589499	C	T	83.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.776;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=28.067;MLEAC=1;MLEAF=0.500;MQ=56.27;MQRankSum=-7.752;QD=0.66;ReadPosRankSum=0.732;SOR=4.047;set=HC	GT:AD:AF:DP	0/1:112,15:0.12:127
chr9	33386465	rs74668961	A	G	930.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.463;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.71;MQRankSum=-11.453;QD=5.51;ReadPosRankSum=-3.610;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:138,31:0.18:169
chr9	33386469	rs78695486	C	T	992.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.600;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=0.680;MLEAC=1;MLEAF=0.500;MQ=56.55;MQRankSum=-11.918;QD=5.64;ReadPosRankSum=-4.231;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:139,37:0.21:176
chr9	33386510	rs77962308	CA	TG	1447.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;JOINED;set=Intersection	GT:AD:AF:DP	0/1:124,43:0.26:167
chr9	33386526	rs79202054	G	A	1425.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:108,43:0.28:151
chr9	33395031	rs72707429	G	A	2460.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.814;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=6.363;MLEAC=1;MLEAF=0.500;MQ=57.30;MQRankSum=-6.526;QD=17.21;ReadPosRankSum=3.609;SOR=1.190;set=HC	GT:AD:AF:DP	0/1:78,65:0.45:143
chr9	33395039	rs72707431	C	T	2460.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.244;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=10.052;MLEAC=1;MLEAF=0.500;MQ=57.44;MQRankSum=-6.934;QD=16.08;ReadPosRankSum=4.151;SOR=1.400;set=HC	GT:AD:AF:DP	0/1:87,66:0.43:153
chr9	33395108	rs2381003	G	A	687.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.940;ClippingRankSum=0.000;DB;DP=271;ExcessHet=3.0103;FS=0.623;MLEAC=1;MLEAF=0.500;MQ=59.39;MQRankSum=-7.786;QD=2.60;ReadPosRankSum=-2.016;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:223,42:0.16:265
chr9	33395131	.	T	TCATCTTCCTC	136.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.130;ClippingRankSum=0.000;DP=281;ExcessHet=3.0103;FS=5.358;MLEAC=1;MLEAF=0.500;MQ=59.31;MQRankSum=-7.497;QD=0.50;ReadPosRankSum=-5.896;SOR=1.283;set=HC	GT:AD:AF:DP	0/1:251,25:0.09:276
chr9	33395196	rs642636	A	G	5549.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr9	33441710	rs377623543	CA	C	111.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.465;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=15.96;ReadPosRankSum=-1.465;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:1,6:0.86:7
chr9	33441713	.	A	C	120.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.611;ClippingRankSum=-0.000;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=15.10;ReadPosRankSum=-0.000;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:2,6:0.75:8
chr9	33441826	rs16919255	C	A	2789.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr9	33442952	rs2228332	G	A	4121.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:2,152:0.99:154
chr9	33442986	rs2231231	A	C	2945.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:2,101:0.98:103
chr9	33444000	rs2227285	G	C	509.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr9	33447306	rs517210	C	G	2441.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr9	33447424	rs591810	C	G	5016.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr9	33465182	rs2785210	G	A	3335.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr9	33465651	rs560833	T	C	1067.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr9	33466219	rs3739681	A	C	4197.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr9	33467510	.	T	C	3389.77	.	AC=2;AF=1.00;AN=2;DP=120;set=Intersection	GT:AD:AF:DP	1/1:3,115:0.97:118
chr9	33467983	rs679644	G	A	2787.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr9	33468682	rs11795028	T	C	3970.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:2,137:0.99:139
chr9	33469427	rs10813983	G	A	4666.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:1,172:0.99:173
chr9	33473893	rs2777744	T	G	7674.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr9	33524684	rs3843933	G	A	1717.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr9	33524725	rs3843934	G	T	1271.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr9	33537060	rs150869223	C	T	544.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:2,21:0.91:23
chr9	33541050	rs149226086	G	A	619.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr9	33548690	rs41313776	G	A	9906.77	.	AC=2;AF=1.00;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	1/1:0,363:1.00:363
chr9	33557984	rs368655610	G	A	237.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.88;QD=29.72;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr9	33558025	rs34748833	T	A	1020.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr9	33568592	rs7046617	G	T	633.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr9	33568687	rs7032174	T	A	2850.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr9	33568763	rs41313967	C	T	3254.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr9	33573160	rs1807130	C	T	1386.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr9	33573377	rs597219	T	C	620.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr9	33617691	rs147881110	TGGATGTAACACG	T	1674.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr9	33618028	rs855511	A	G	1679.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr9	33618358	rs855512	A	G	9235.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:0,339:1.00:339
chr9	33618460	rs966447	A	T	4988.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr9	33618497	rs2380835	G	A	2671.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr9	33624707	.	G	A	957.77	.	AC=1;AF=0.500;AN=2;DP=185;set=Intersection	GT:AD:AF:DP	0/1:124,54:0.30:178
chr9	33625185	rs36079164	C	T	9358.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	1/1:0,341:1.00:341
chr9	33629238	rs10814016	T	C	3207.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr9	33750748	rs10971678	G	T	496.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr9	33794631	.	G	C	94.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.673;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.63;MQRankSum=-5.683;QD=2.79;ReadPosRankSum=-1.456;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:29,5:0.15:34
chr9	33794632	.	G	A	94.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.260;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.56;MQRankSum=-5.593;QD=2.87;ReadPosRankSum=-1.649;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:28,5:0.15:33
chr9	33794667	rs369375802	C	G	163.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.927;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=1.293;MLEAC=1;MLEAF=0.500;MQ=57.42;MQRankSum=-8.177;QD=2.37;ReadPosRankSum=-0.046;SOR=0.929;set=HC	GT:AD:AF:DP	0/1:56,13:0.19:69
chr9	33794707	.	TG	CA	228.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.016;ClippingRankSum=0.000;DP=104;ExcessHet=3.0103;FS=2.712;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.30;MQRankSum=-10.111;QD=2.20;ReadPosRankSum=3.476;SOR=1.190;set=HC	GT:AD:AF:DP	0/1:91,13:0.12:104
chr9	33794717	.	A	G	171.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.179;ClippingRankSum=0.000;DP=124;ExcessHet=3.0103;FS=4.229;MLEAC=1;MLEAF=0.500;MQ=58.58;MQRankSum=-11.061;QD=1.39;ReadPosRankSum=3.908;SOR=1.294;set=HC	GT:AD:AF:DP	0/1:111,13:0.10:124
chr9	33794726	.	GC	CA	278.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.491;ClippingRankSum=0.000;DP=148;ExcessHet=3.0103;FS=5.876;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.70;MQRankSum=-12.099;QD=1.88;ReadPosRankSum=3.254;SOR=1.493;set=HC	GT:AD:AF:DP	0/1:134,14:0.09:148
chr9	33794736	.	A	G	506.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.992;ClippingRankSum=0.000;DP=162;ExcessHet=3.0103;FS=10.494;MLEAC=1;MLEAF=0.500;MQ=58.18;MQRankSum=-12.645;QD=3.13;ReadPosRankSum=-0.604;SOR=1.951;set=HC	GT:AD:AF:DP	0/1:141,21:0.13:162
chr9	33794749	.	C	A	1142.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.274;ClippingRankSum=0.000;DP=195;ExcessHet=3.0103;FS=14.909;MLEAC=1;MLEAF=0.500;MQ=58.26;MQRankSum=-12.113;QD=5.86;ReadPosRankSum=-4.839;SOR=1.757;set=HC	GT:AD:AF:DP	0/1:154,41:0.21:195
chr9	33794753	.	A	G	1217.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.199;ClippingRankSum=0.000;DP=208;ExcessHet=3.0103;FS=18.413;MLEAC=1;MLEAF=0.500;MQ=58.37;MQRankSum=-12.358;QD=5.85;ReadPosRankSum=-4.073;SOR=1.925;set=HC	GT:AD:AF:DP	0/1:166,42:0.20:208
chr9	33794759	.	G	A	665.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.215;ClippingRankSum=0.000;DP=231;ExcessHet=3.0103;FS=11.624;MLEAC=1;MLEAF=0.500;MQ=58.39;MQRankSum=-11.466;QD=2.88;ReadPosRankSum=-4.270;SOR=1.501;set=HC	GT:AD:AF:DP	0/1:184,47:0.20:231
chr9	33794797	.	TGA	T	2844.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.489;ClippingRankSum=0.000;DP=333;ExcessHet=3.0103;FS=1.518;MLEAC=1;MLEAF=0.500;MQ=57.98;MQRankSum=-11.494;QD=8.81;ReadPosRankSum=-0.815;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:238,85:0.26:323
chr9	33794809	rs201061108	G	A	4631.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.955;ClippingRankSum=0.000;DB;DP=353;ExcessHet=3.0103;FS=4.283;MLEAC=1;MLEAF=0.500;MQ=57.37;MQRankSum=-15.918;QD=13.16;ReadPosRankSum=0.873;SOR=0.864;set=HC	GT:AD:AF:DP	0/1:229,123:0.35:352
chr9	33794811	.	GG	AT	131.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.514;ClippingRankSum=0.000;DP=356;ExcessHet=3.0103;FS=10.497;JOINED;MLEAC=1;MLEAF=0.500;MQ=57.39;MQRankSum=-8.606;QD=0.37;ReadPosRankSum=-1.387;SOR=1.590;set=HC	GT:AD:AF:DP	0/1:324,31:0.09:355
chr9	33794840	rs10117993	G	A	60.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.095;ClippingRankSum=0.000;DB;DP=401;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.96;MQRankSum=-8.470;QD=0.15;ReadPosRankSum=-2.502;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:349,50:0.13:399
chr9	33794877	.	C	T	1473.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.930;ClippingRankSum=0.000;DP=406;ExcessHet=3.0103;FS=3.319;MLEAC=1;MLEAF=0.500;MQ=56.31;MQRankSum=-10.757;QD=3.63;ReadPosRankSum=0.650;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:329,77:0.19:406
chr9	33794890	.	T	A	2121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.836;ClippingRankSum=0.000;DP=374;ExcessHet=3.0103;FS=3.663;MLEAC=1;MLEAF=0.500;MQ=56.61;MQRankSum=-11.139;QD=5.67;ReadPosRankSum=2.779;SOR=0.494;set=HC	GT:AD:AF:DP	0/1:302,72:0.19:374
chr9	33794894	.	T	C	4670.77	.	AC=1;AF=0.500;AN=2;DP=357;set=Intersection	GT:AD:AF:DP	0/1:188,169:0.47:357
chr9	33794906	.	TTGAAACA	T	1280.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.425;ClippingRankSum=0.000;DP=308;ExcessHet=3.0103;FS=50.009;MLEAC=1;MLEAF=0.500;MQ=56.20;MQRankSum=-6.316;QD=4.54;ReadPosRankSum=-1.970;SOR=3.312;set=HC	GT:AD:AF:DP	0/1:232,50:0.18:282
chr9	33794915	.	TTCC	T	1319.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.184;ClippingRankSum=0.000;DP=259;ExcessHet=3.0103;FS=55.154;MLEAC=1;MLEAF=0.500;MQ=55.83;MQRankSum=-5.663;QD=5.10;ReadPosRankSum=-1.025;SOR=3.821;set=HC	GT:AD:AF:DP	0/1:213,46:0.18:259
chr9	33794923	.	CTT	C	3718.73	.	AC=1;AF=0.500;ALERT;AN=2;DP=237;set=Intersection	GT:AD:AF:DP	0/1:124,98:0.44:222
chr9	33794926	.	T	C	1115.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=8.404;ClippingRankSum=0.000;DP=229;ExcessHet=3.0103;FS=47.359;MLEAC=1;MLEAF=0.500;MQ=55.52;MQRankSum=-4.804;QD=4.87;ReadPosRankSum=-1.105;SOR=3.852;set=HC	GT:AD:AF:DP	0/1:188,41:0.18:229
chr9	33794927	.	T	C	1756.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.988;ClippingRankSum=0.000;DP=218;ExcessHet=3.0103;FS=6.092;MLEAC=1;MLEAF=0.500;MQ=55.33;MQRankSum=-9.997;QD=8.06;ReadPosRankSum=2.551;SOR=0.363;set=HC	GT:AD:AF:DP	0/1:163,55:0.25:218
chr9	33794929	.	A	T	1157.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.987;ClippingRankSum=0.000;DP=207;ExcessHet=3.0103;FS=39.398;MLEAC=1;MLEAF=0.500;MQ=55.11;MQRankSum=-4.664;QD=5.59;ReadPosRankSum=-2.057;SOR=3.520;set=HC	GT:AD:AF:DP	0/1:168,39:0.19:207
chr9	33794933	.	T	G	1076.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.107;ClippingRankSum=0.000;DP=193;ExcessHet=3.0103;FS=37.690;MLEAC=1;MLEAF=0.500;MQ=54.79;MQRankSum=-4.634;QD=5.58;ReadPosRankSum=-2.849;SOR=3.495;set=HC	GT:AD:AF:DP	0/1:156,37:0.19:193
chr9	33794942	.	A	G	893.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.073;ClippingRankSum=0.000;DP=167;ExcessHet=3.0103;FS=38.947;MLEAC=1;MLEAF=0.500;MQ=54.33;MQRankSum=-4.133;QD=5.35;ReadPosRankSum=-4.185;SOR=3.893;set=HC	GT:AD:AF:DP	0/1:135,32:0.19:167
chr9	33794955	.	G	T	387.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.441;ClippingRankSum=0.000;DP=128;ExcessHet=3.0103;FS=22.245;MLEAC=1;MLEAF=0.500;MQ=54.78;MQRankSum=-3.703;QD=3.03;ReadPosRankSum=-4.272;SOR=3.553;set=HC	GT:AD:AF:DP	0/1:110,18:0.14:128
chr9	33794956	.	G	C	390.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.456;ClippingRankSum=0.000;DP=128;ExcessHet=3.0103;FS=22.245;MLEAC=1;MLEAF=0.500;MQ=54.78;MQRankSum=-3.703;QD=3.05;ReadPosRankSum=-4.282;SOR=3.553;set=HC	GT:AD:AF:DP	0/1:110,18:0.14:128
chr9	33794965	.	A	C	150.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.007;ClippingRankSum=0.000;DP=99;ExcessHet=3.0103;FS=3.810;MLEAC=1;MLEAF=0.500;MQ=55.29;MQRankSum=-2.547;QD=1.52;ReadPosRankSum=-2.956;SOR=1.670;set=HC	GT:AD:AF:DP	0/1:92,7:0.07:99
chr9	33794975	.	A	G	929.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.256;ClippingRankSum=0.000;DP=86;ExcessHet=3.0103;FS=3.354;MLEAC=1;MLEAF=0.500;MQ=54.96;MQRankSum=-8.302;QD=10.81;ReadPosRankSum=0.835;SOR=0.346;set=HC	GT:AD:AF:DP	0/1:58,28:0.33:86
chr9	33794981	.	A	G	939.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.794;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=5.383;MLEAC=1;MLEAF=0.500;MQ=54.20;MQRankSum=-8.045;QD=13.43;ReadPosRankSum=-0.411;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:45,25:0.36:70
chr9	33795004	.	T	C	510.77	.	AC=1;AF=0.500;AN=2;DP=40;set=Intersection	GT:AD:AF:DP	0/1:26,14:0.35:40
chr9	33795415	.	G	A	282.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.163;ClippingRankSum=0.000;DP=87;ExcessHet=3.0103;FS=7.376;MLEAC=1;MLEAF=0.500;MQ=57.99;MQRankSum=-9.225;QD=3.25;ReadPosRankSum=1.672;SOR=0.154;set=HC	GT:AD:AF:DP	0/1:74,13:0.15:87
chr9	33795417	rs373360400	AGCCGAG	A	258.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.099;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=7.202;MLEAC=1;MLEAF=0.500;MQ=58.18;MQRankSum=-9.704;QD=2.70;ReadPosRankSum=1.591;SOR=0.165;set=HC	GT:AD:AF:DP	0/1:83,13:0.14:96
chr9	33795437	rs372175402	C	A	120.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.087;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=10.348;MLEAC=1;MLEAF=0.500;MQ=58.65;MQRankSum=-10.556;QD=1.07;ReadPosRankSum=1.661;SOR=0.422;set=HC	GT:AD:AF:DP	0/1:102,11:0.10:113
chr9	33795439	.	G	A	117.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.964;ClippingRankSum=0.000;DP=116;ExcessHet=3.0103;FS=10.185;MLEAC=1;MLEAF=0.500;MQ=58.67;MQRankSum=-10.650;QD=1.02;ReadPosRankSum=1.479;SOR=0.427;set=HC	GT:AD:AF:DP	0/1:104,11:0.10:115
chr9	33795441	.	C	G	117.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.732;ClippingRankSum=0.000;DP=117;ExcessHet=3.0103;FS=10.303;MLEAC=1;MLEAF=0.500;MQ=58.69;MQRankSum=-10.697;QD=1.02;ReadPosRankSum=1.358;SOR=0.424;set=HC	GT:AD:AF:DP	0/1:105,11:0.09:116
chr9	33795579	.	C	T	1952.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.518;ClippingRankSum=0.000;DP=470;ExcessHet=3.0103;FS=9.646;MLEAC=1;MLEAF=0.500;MQ=58.11;MQRankSum=-20.116;QD=4.17;ReadPosRankSum=-8.108;SOR=1.557;set=HC	GT:AD:AF:DP	0/1:397,71:0.15:468
chr9	33795581	.	T	C	2132.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.243;ClippingRankSum=0.000;DP=477;ExcessHet=3.0103;FS=7.827;MLEAC=1;MLEAF=0.500;MQ=58.01;MQRankSum=-20.336;QD=4.49;ReadPosRankSum=-8.136;SOR=1.410;set=HC	GT:AD:AF:DP	0/1:399,76:0.16:475
chr9	33795583	.	C	T	2552.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.882;ClippingRankSum=0.000;DP=486;ExcessHet=3.0103;FS=7.513;MLEAC=1;MLEAF=0.500;MQ=57.94;MQRankSum=-20.594;QD=5.27;ReadPosRankSum=-8.080;SOR=1.337;set=HC	GT:AD:AF:DP	0/1:403,81:0.17:484
chr9	33795593	rs201140357	G	A	3778.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.107;ClippingRankSum=0.000;DB;DP=545;ExcessHet=3.0103;FS=2.211;MLEAC=1;MLEAF=0.500;MQ=57.42;MQRankSum=-21.973;QD=6.96;ReadPosRankSum=-8.037;SOR=0.910;set=HC	GT:AD:AF:DP	0/1:427,116:0.21:543
chr9	33795601	.	G	T	4729.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.131;ClippingRankSum=0.000;DP=587;ExcessHet=3.0103;FS=3.971;MLEAC=1;MLEAF=0.500;MQ=56.95;MQRankSum=-22.902;QD=8.10;ReadPosRankSum=-7.420;SOR=1.050;set=HC	GT:AD:AF:DP	0/1:443,141:0.24:584
chr9	33795603	.	G	C	5278.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.122;ClippingRankSum=0.000;DP=598;ExcessHet=3.0103;FS=3.912;MLEAC=1;MLEAF=0.500;MQ=56.86;MQRankSum=-23.138;QD=8.87;ReadPosRankSum=-6.991;SOR=1.075;set=HC	GT:AD:AF:DP	0/1:449,146:0.25:595
chr9	33795613	.	C	T	5973.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.524;ClippingRankSum=0.000;DP=660;ExcessHet=3.0103;FS=0.597;MLEAC=1;MLEAF=0.500;MQ=56.49;MQRankSum=-24.383;QD=9.11;ReadPosRankSum=-4.647;SOR=0.828;set=HC	GT:AD:AF:DP	0/1:482,174:0.27:656
chr9	33795622	.	T	C	6399.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.277;ClippingRankSum=0.000;DP=694;ExcessHet=3.0103;FS=1.259;MLEAC=1;MLEAF=0.500;MQ=56.50;MQRankSum=-24.976;QD=9.26;ReadPosRankSum=-1.146;SOR=0.871;set=HC	GT:AD:AF:DP	0/1:506,185:0.27:691
chr9	33795624	.	A	C	6436.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.445;ClippingRankSum=0.000;DP=701;ExcessHet=3.0103;FS=2.781;MLEAC=1;MLEAF=0.500;MQ=56.45;MQRankSum=-25.161;QD=9.22;ReadPosRankSum=-1.191;SOR=0.959;set=HC	GT:AD:AF:DP	0/1:505,193:0.28:698
chr9	33795638	.	C	T	7225.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.338;ClippingRankSum=0.000;DP=741;ExcessHet=3.0103;FS=4.602;MLEAC=1;MLEAF=0.500;MQ=56.47;MQRankSum=-25.735;QD=9.79;ReadPosRankSum=3.404;SOR=1.027;set=HC	GT:AD:AF:DP	0/1:528,210:0.28:738
chr9	33795640	.	ACCC	A	7231.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.936;ClippingRankSum=0.000;DP=749;ExcessHet=3.0103;FS=5.700;MLEAC=1;MLEAF=0.500;MQ=56.53;MQRankSum=-25.906;QD=9.68;ReadPosRankSum=4.018;SOR=1.023;set=HC	GT:AD:AF:DP	0/1:536,211:0.28:747
chr9	33795646	.	C	CAA	7293.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.172;ClippingRankSum=0.000;DP=741;ExcessHet=3.0103;FS=6.759;MLEAC=1;MLEAF=0.500;MQ=56.46;MQRankSum=-25.748;QD=9.87;ReadPosRankSum=4.768;SOR=0.990;set=HC	GT:AD:AF:DP	0/1:526,213:0.29:739
chr9	33795652	.	T	C	7623.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.369;ClippingRankSum=0.000;DP=749;ExcessHet=3.0103;FS=4.509;MLEAC=1;MLEAF=0.500;MQ=56.44;MQRankSum=-25.554;QD=10.21;ReadPosRankSum=5.279;SOR=0.816;set=HC	GT:AD:AF:DP	0/1:522,225:0.30:747
chr9	33795703	rs370216620	C	T	8016.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.744;ClippingRankSum=0.000;DB;DP=598;ExcessHet=3.0103;FS=6.323;MLEAC=1;MLEAF=0.500;MQ=55.12;MQRankSum=-23.229;QD=13.45;ReadPosRankSum=0.551;SOR=0.370;set=HC	GT:AD:AF:DP	0/1:372,224:0.38:596
chr9	33795707	rs373461727	C	G	7877.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.678;ClippingRankSum=0.000;DB;DP=576;ExcessHet=3.0103;FS=7.421;MLEAC=1;MLEAF=0.500;MQ=55.20;MQRankSum=-22.884;QD=13.72;ReadPosRankSum=1.001;SOR=0.362;set=HC	GT:AD:AF:DP	0/1:361,213:0.37:574
chr9	33795731	.	A	G	5507.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.132;ClippingRankSum=0.000;DP=383;ExcessHet=3.0103;FS=6.554;MLEAC=1;MLEAF=0.500;MQ=54.72;MQRankSum=-18.654;QD=14.46;ReadPosRankSum=-0.596;SOR=0.452;set=HC	GT:AD:AF:DP	0/1:233,148:0.39:381
chr9	33795735	.	A	T	5327.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.970;ClippingRankSum=0.000;DP=365;ExcessHet=3.0103;FS=7.723;MLEAC=1;MLEAF=0.500;MQ=54.56;MQRankSum=-17.891;QD=14.80;ReadPosRankSum=-1.318;SOR=0.421;set=HC	GT:AD:AF:DP	0/1:216,144:0.40:360
chr9	33795739	.	C	T	5189.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.976;ClippingRankSum=0.000;DP=350;ExcessHet=3.0103;FS=6.144;MLEAC=1;MLEAF=0.500;MQ=54.55;MQRankSum=-17.270;QD=14.91;ReadPosRankSum=-1.317;SOR=0.451;set=HC	GT:AD:AF:DP	0/1:210,138:0.40:348
chr9	33795762	.	C	T	2194.77	.	AC=1;AF=0.500;AN=2;DP=234;set=Intersection	GT:AD:AF:DP	0/1:147,85:0.37:232
chr9	33795775	.	C	T	2468.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.155;ClippingRankSum=0.000;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.87;MQRankSum=-11.591;QD=13.56;ReadPosRankSum=0.783;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:115,67:0.37:182
chr9	33796660	.	T	C	301.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.884;ClippingRankSum=0.000;DP=243;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.97;MQRankSum=-8.399;QD=1.27;ReadPosRankSum=-5.616;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:198,40:0.17:238
chr9	33796672	rs77765166	TG	CA	1311.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.271;ClippingRankSum=0.000;DB;DP=280;ExcessHet=3.0103;FS=0.575;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.79;MQRankSum=-10.164;QD=4.74;ReadPosRankSum=-2.095;SOR=0.630;set=HC	GT:AD:AF:DP	0/1:227,50:0.18:277
chr9	33796734	.	C	A	207.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.660;ClippingRankSum=0.000;DP=530;ExcessHet=3.0103;FS=9.262;MLEAC=1;MLEAF=0.500;MQ=56.21;MQRankSum=-12.685;QD=0.39;ReadPosRankSum=-2.777;SOR=1.668;set=HC	GT:AD:AF:DP	0/1:483,45:0.09:528
chr9	33796777	rs368576294	A	G	1968.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.634;ClippingRankSum=0.000;DB;DP=528;ExcessHet=3.0103;FS=14.599;MLEAC=1;MLEAF=0.500;MQ=56.01;MQRankSum=-15.025;QD=3.84;ReadPosRankSum=4.347;SOR=1.698;set=HC	GT:AD:AF:DP	0/1:430,83:0.16:513
chr9	33796785	rs199600414	C	G	477.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.078;ClippingRankSum=0.000;DB;DP=513;ExcessHet=3.0103;FS=31.045;MLEAC=1;MLEAF=0.500;MQ=55.78;MQRankSum=-10.411;QD=0.96;ReadPosRankSum=5.692;SOR=3.389;set=HC	GT:AD:AF:DP	0/1:448,49:0.10:497
chr9	33796799	rs200709040	A	T	4916.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.182;ClippingRankSum=0.000;DB;DP=458;ExcessHet=3.0103;FS=3.361;MLEAC=1;MLEAF=0.500;MQ=55.19;MQRankSum=-19.058;QD=11.23;ReadPosRankSum=4.078;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:277,161:0.37:438
chr9	33796801	rs143707562	G	A	100.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.370;ClippingRankSum=0.000;DB;DP=448;ExcessHet=3.0103;FS=2.367;MLEAC=1;MLEAF=0.500;MQ=55.16;MQRankSum=-7.806;QD=0.23;ReadPosRankSum=3.175;SOR=1.035;set=HC	GT:AD:AF:DP	0/1:408,33:0.07:441
chr9	33796802	.	TAAGTG	T	1302.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.245;ClippingRankSum=0.000;DP=449;ExcessHet=3.0103;FS=1.681;MLEAC=1;MLEAF=0.500;MQ=55.10;MQRankSum=-10.444;QD=2.95;ReadPosRankSum=-0.889;SOR=0.842;set=HC	GT:AD:AF:DP	0/1:381,60:0.14:441
chr9	33796811	rs200466488	G	A	1401.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.269;ClippingRankSum=0.000;DB;DP=425;ExcessHet=3.0103;FS=1.683;MLEAC=1;MLEAF=0.500;MQ=54.93;MQRankSum=-9.812;QD=3.36;ReadPosRankSum=-1.189;SOR=0.995;set=HC	GT:AD:AF:DP	0/1:360,57:0.14:417
chr9	33796827	rs375097863	G	A	1256.77	.	AC=1;AF=0.500;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	0/1:266,81:0.23:347
chr9	33796858	rs369633136	C	A	530.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:168,54:0.24:222
chr9	33796889	.	A	G	1165.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.908;ClippingRankSum=0.000;DP=120;ExcessHet=3.0103;FS=20.628;MLEAC=1;MLEAF=0.500;MQ=55.91;MQRankSum=-5.776;QD=10.41;ReadPosRankSum=3.752;SOR=4.113;set=HC	GT:AD:AF:DP	0/1:77,35:0.31:112
chr9	33796896	.	T	C	1205.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.442;ClippingRankSum=0.000;DP=107;ExcessHet=3.0103;FS=13.222;MLEAC=1;MLEAF=0.500;MQ=55.63;MQRankSum=-5.986;QD=12.18;ReadPosRankSum=2.541;SOR=3.506;set=HC	GT:AD:AF:DP	0/1:64,35:0.35:99
chr9	33796898	.	G	A	1219.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.189;ClippingRankSum=0.000;DP=102;ExcessHet=3.0103;FS=13.249;MLEAC=1;MLEAF=0.500;MQ=55.70;MQRankSum=-5.997;QD=12.84;ReadPosRankSum=2.530;SOR=3.556;set=HC	GT:AD:AF:DP	0/1:61,34:0.36:95
chr9	33796904	.	G	A	1248.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.630;ClippingRankSum=0.000;DP=87;ExcessHet=3.0103;FS=11.637;MLEAC=1;MLEAF=0.500;MQ=55.29;MQRankSum=-5.747;QD=15.61;ReadPosRankSum=0.198;SOR=3.258;set=HC	GT:AD:AF:DP	0/1:46,34:0.42:80
chr9	33797861	rs151192741	A	G	6743.77	.	AC=1;AF=0.500;AN=2;DB;DP=472;set=Intersection	GT:AD:AF:DP	0/1:291,177:0.38:468
chr9	33797881	rs372122039	G	A	9150.77	.	AC=1;AF=0.500;AN=2;DB;DP=659;set=Intersection	GT:AD:AF:DP	0/1:390,265:0.40:655
chr9	33797896	rs113220686	G	A	1561.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.404;ClippingRankSum=0.000;DB;DP=808;ExcessHet=3.0103;FS=11.102;MLEAC=1;MLEAF=0.500;MQ=55.07;MQRankSum=-17.415;QD=1.94;ReadPosRankSum=-5.076;SOR=1.566;set=HC	GT:AD:AF:DP	0/1:670,134:0.17:804
chr9	33797917	.	T	C	20355.77	.	AC=1;AF=0.500;AN=2;DP=1086;set=Intersection	GT:AD:AF:DP	0/1:576,506:0.47:1082
chr9	33797928	.	G	GCC	23584.73	.	AC=1;AF=0.500;AN=2;DP=1193;set=Intersection	GT:AD:AF:DP	0/1:610,579:0.49:1189
chr9	33797930	.	GAC	G	25668.73	.	AC=1;AF=0.500;AN=2;DP=1233;set=Intersection	GT:AD:AF:DP	0/1:626,603:0.49:1229
chr9	33797951	rs150316320	A	C	31726.77	.	AC=1;AF=0.500;AN=2;DB;DP=1459;set=Intersection	GT:AD:AF:DP	0/1:667,788:0.54:1455
chr9	33797962	rs374178684	A	G	34812.77	.	AC=1;AF=0.500;AN=2;DB;DP=1552;set=Intersection	GT:AD:AF:DP	0/1:671,873:0.57:1544
chr9	33797969	rs149664918	T	A	5016.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.080;ClippingRankSum=0.000;DB;DP=1572;ExcessHet=3.0103;FS=1.676;MLEAC=1;MLEAF=0.500;MQ=55.89;MQRankSum=-9.760;QD=3.21;ReadPosRankSum=-3.246;SOR=0.907;set=HC	GT:AD:AF:DP	0/1:1350,214:0.14:1564
chr9	33797978	rs145485932	G	A	5943.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.671;ClippingRankSum=0.000;DB;DP=1581;ExcessHet=3.0103;FS=2.589;MLEAC=1;MLEAF=0.500;MQ=55.86;MQRankSum=-8.105;QD=3.78;ReadPosRankSum=0.063;SOR=0.849;set=HC	GT:AD:AF:DP	0/1:1336,238:0.15:1574
chr9	33797987	rs137945391	G	T	28062.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.538;ClippingRankSum=0.000;DB;DP=1588;ExcessHet=3.0103;FS=2.445;MLEAC=1;MLEAF=0.500;MQ=55.90;MQRankSum=-17.730;QD=17.76;ReadPosRankSum=-0.373;SOR=0.908;set=HC	GT:AD:AF:DP	0/1:853,727:0.46:1580
chr9	33797991	rs146966861	GC	AT	6740.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.180;ClippingRankSum=0.000;DB;DP=1570;ExcessHet=3.0103;FS=1.574;JOINED;MLEAC=1;MLEAF=0.500;MQ=55.94;MQRankSum=-7.395;QD=4.32;ReadPosRankSum=5.512;SOR=0.626;set=HC	GT:AD:AF:DP	0/1:1305,256:0.16:1561
chr9	33797999	rs142141488	A	G	27711.77	.	AC=1;AF=0.500;AN=2;DB;DP=1544;set=Intersection	GT:AD:AF:DP	0/1:820,714:0.47:1534
chr9	33798016	.	C	T	23084.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.597;ClippingRankSum=0.000;DP=1359;ExcessHet=3.0103;FS=3.286;MLEAC=1;MLEAF=0.500;MQ=55.93;MQRankSum=-14.870;QD=17.09;ReadPosRankSum=-1.028;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:762,589:0.44:1351
chr9	33798016	.	CA	TG	2944	.	AC=1;AF=0.500;AN=2;BRF=0.5;FR=0.5000;HP=1;HapScore=1;MGOF=132;MMLQ=26;MQ=51.87;NF=174;NR=285;PP=2944;QD=20;SC=CTCTGCCCACCACCCCTCCAG;SbPval=0.77;Source=Platypus;TC=1080;TCF=461;TCR=619;TR=459;WE=33798025;WS=33798006;set=Platypus	GT:AD:AF:DP	0/1:621,459:0.42:1080
chr9	33798017	rs855581	A	G	35410.77	.	AC=1;AF=0.500;AN=2;DB;DP=1336;set=Intersection	GT:AD:AF:DP	0/1:284,1044:0.79:1328
chr9	33798037	.	T	C	17368.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.042;ClippingRankSum=0.000;DP=1131;ExcessHet=3.0103;FS=4.240;MLEAC=1;MLEAF=0.500;MQ=56.05;MQRankSum=-11.012;QD=15.45;ReadPosRankSum=0.906;SOR=1.031;set=HC	GT:AD:AF:DP	0/1:667,457:0.41:1124
chr9	33798042	rs141382822	G	C	16382.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.141;ClippingRankSum=0.000;DB;DP=1098;ExcessHet=3.0103;FS=5.289;MLEAC=1;MLEAF=0.500;MQ=56.22;MQRankSum=-9.554;QD=15.02;ReadPosRankSum=1.996;SOR=1.091;set=HC	GT:AD:AF:DP	0/1:663,428:0.39:1091
chr9	33798052	rs377380263	C	T	4639.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.722;ClippingRankSum=0.000;DB;DP=1014;ExcessHet=3.0103;FS=6.016;MLEAC=1;MLEAF=0.500;MQ=56.67;MQRankSum=-8.863;QD=4.64;ReadPosRankSum=0.823;SOR=0.349;set=HC	GT:AD:AF:DP	0/1:710,289:0.29:999
chr9	33798073	.	C	T	18930.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.260;ClippingRankSum=0.000;DP=728;ExcessHet=3.0103;FS=1.321;MLEAC=1;MLEAF=0.500;MQ=57.75;MQRankSum=-10.817;QD=26.40;ReadPosRankSum=-1.230;SOR=0.834;set=HC	GT:AD:AF:DP	0/1:242,475:0.66:717
chr9	33798073	.	CTT	TTC	2944	.	AC=1;AF=0.500;AN=2;BRF=0.44;FR=0.5000;HP=3;HapScore=1;MGOF=132;MMLQ=28;MQ=54.59;NF=88;NR=289;PP=2944;QD=20;SC=ACACTCTGAGCTTTGGTGGTG;SbPval=0.64;Source=Platypus;TC=599;TCF=151;TCR=448;TR=377;WE=33798087;WS=33798063;set=Platypus	GT:AD:AF:DP	0/1:222,377:0.63:599
chr9	33798075	.	T	C	19018.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.620;ClippingRankSum=0.000;DP=708;ExcessHet=3.0103;FS=0.629;MLEAC=1;MLEAF=0.500;MQ=57.69;MQRankSum=-10.774;QD=27.29;ReadPosRankSum=-1.675;SOR=0.798;set=HC	GT:AD:AF:DP	0/1:235,462:0.66:697
chr9	33798079	rs144845866	T	C	3103.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.199;ClippingRankSum=0.000;DB;DP=661;ExcessHet=3.0103;FS=2.272;MLEAC=1;MLEAF=0.500;MQ=57.50;MQRankSum=-7.757;QD=4.78;ReadPosRankSum=1.133;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:461,188:0.29:649
chr9	33798112	.	C	T	5218.77	.	AC=1;AF=0.500;AN=2;DP=292;set=Intersection	GT:AD:AF:DP	0/1:117,168:0.59:285
chr9	33798574	rs201773718	G	A	4570.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.477;ClippingRankSum=0.000;DB;DP=415;ExcessHet=3.0103;FS=1.886;MLEAC=1;MLEAF=0.500;MQ=56.00;MQRankSum=-19.367;QD=11.34;ReadPosRankSum=0.790;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:274,129:0.32:403
chr9	33798596	rs377148991	T	C	5180.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.622;ClippingRankSum=0.000;DB;DP=485;ExcessHet=3.0103;FS=1.806;MLEAC=1;MLEAF=0.500;MQ=55.22;MQRankSum=-18.590;QD=10.88;ReadPosRankSum=2.244;SOR=0.575;set=HC	GT:AD:AF:DP	0/1:303,173:0.36:476
chr9	33798960	rs72711744	C	G	317.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:38,17:0.31:55
chr9	33798998	rs373120184	T	C	530.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:59,18:0.23:77
chr9	33799010	.	C	T	462.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.786;ClippingRankSum=0.000;DP=90;ExcessHet=3.0103;FS=22.431;MLEAC=1;MLEAF=0.500;MQ=58.34;MQRankSum=-7.993;QD=5.14;ReadPosRankSum=0.263;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:73,17:0.19:90
chr9	33799026	rs148495550	C	G	237.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.640;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=10.971;MLEAC=1;MLEAF=0.500;MQ=58.94;MQRankSum=-8.159;QD=2.33;ReadPosRankSum=0.921;SOR=0.099;set=HC	GT:AD:AF:DP	0/1:89,13:0.13:102
chr9	33799163	rs376841271	C	A	421.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.752;ClippingRankSum=0.000;DB;DP=387;ExcessHet=3.0103;FS=8.086;MLEAC=1;MLEAF=0.500;MQ=58.79;MQRankSum=-19.049;QD=1.10;ReadPosRankSum=2.450;SOR=1.284;set=HC	GT:AD:AF:DP	0/1:350,35:0.09:385
chr9	33799181	.	C	T	322.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.459;ClippingRankSum=0.000;DP=372;ExcessHet=3.0103;FS=5.623;MLEAC=1;MLEAF=0.500;MQ=58.64;MQRankSum=-14.801;QD=0.88;ReadPosRankSum=0.376;SOR=0.932;set=HC	GT:AD:AF:DP	0/1:335,33:0.09:368
chr9	33799186	.	G	A	339.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.151;ClippingRankSum=0.000;DP=368;ExcessHet=3.0103;FS=6.938;MLEAC=1;MLEAF=0.500;MQ=58.67;MQRankSum=-15.135;QD=0.93;ReadPosRankSum=0.375;SOR=0.903;set=HC	GT:AD:AF:DP	0/1:331,33:0.09:364
chr9	33799218	.	G	A	381.77	.	AC=1;AF=0.500;AN=2;DP=268;set=Intersection	GT:AD:AF:DP	0/1:232,28:0.11:260
chr9	33799224	.	C	G	350.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.086;ClippingRankSum=0.000;DP=253;ExcessHet=3.0103;FS=5.239;MLEAC=1;MLEAF=0.500;MQ=58.47;MQRankSum=-13.861;QD=1.43;ReadPosRankSum=-1.370;SOR=0.352;set=HC	GT:AD:AF:DP	0/1:219,26:0.11:245
chr9	33799230	.	C	CTG	395.73	.	AC=1;AF=0.500;AN=2;DP=235;set=Intersection	GT:AD:AF:DP	0/1:201,26:0.11:227
chr9	33799245	.	G	T	341.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.335;ClippingRankSum=0.000;DP=187;ExcessHet=3.0103;FS=1.951;MLEAC=1;MLEAF=0.500;MQ=58.83;MQRankSum=-11.580;QD=1.87;ReadPosRankSum=-0.734;SOR=0.432;set=HC	GT:AD:AF:DP	0/1:162,21:0.11:183
chr9	33799251	.	C	T	344.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.951;ClippingRankSum=0.000;DP=177;ExcessHet=3.0103;FS=0.934;MLEAC=1;MLEAF=0.500;MQ=58.96;MQRankSum=-11.097;QD=1.98;ReadPosRankSum=0.111;SOR=0.541;set=HC	GT:AD:AF:DP	0/1:155,19:0.11:174
chr9	33799263	.	C	T	290.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.868;ClippingRankSum=0.000;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.98;MQRankSum=-10.516;QD=1.82;ReadPosRankSum=0.848;SOR=0.567;set=HC	GT:AD:AF:DP	0/1:142,18:0.11:160
chr9	33799285	.	T	C	538	.	AC=1;AF=0.500;AN=2;BRF=0.36;FR=0.5000;HP=2;HapScore=1;MGOF=95;MMLQ=28;MQ=50.62;NF=16;NR=31;PP=538;QD=12.1866215436;SC=CATCCTCCAATCTCAGGTCAG;SbPval=0.15;Source=Platypus;TC=150;TCF=37;TCR=113;TR=47;WE=33799293;WS=33799275;set=Platypus	GT:AD:AF:DP	1/0:103,47:0.31:150
chr9	33924136	rs116990828	G	A	869.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr9	33927899	rs307692	G	A	3044.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr9	33960778	.	C	CA	211.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.225;ClippingRankSum=0.000;DP=221;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.10;ReadPosRankSum=-1.713;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:149,44:0.23:193
chr9	34011803	rs7029112	C	G	1533.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr9	34011835	rs7029122	C	T	724.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr9	34017015	rs11432780	G	GA	1953.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.400;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=0.683;QD=13.29;ReadPosRankSum=1.420;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:29,118:0.80:147
chr9	34017106	rs1785506	C	T	7815.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr9	34089395	rs2296897	T	C	2133.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr9	34093274	rs16935392	G	C	2153.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr9	34096597	rs7857551	G	A	839.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr9	34096873	rs10971910	T	C	3774.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:1,129:0.99:130
chr9	34106410	rs10971917	C	T	3986.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:4,153:0.97:157
chr9	34211942	rs1556439	T	C	2472.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr9	34242242	rs7857658	G	A	2711.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr9	34256347	rs10814083	C	T	4835.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:1,167:0.99:168
chr9	34256539	rs36025573	A	G	6055.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:2,233:0.99:235
chr9	34263389	rs10814084	T	A	404.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr9	34286486	rs6476442	G	T	427.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr9	34370701	rs58832809	TG	T	1352.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr9	34371788	rs7852399	A	T	8554.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr9	34372783	rs4879781	G	C	4380.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr9	34372873	rs4879782	C	G	3052.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr9	34378999	rs3818830	A	T	624.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr9	34382726	rs3808876	A	G	1426.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr9	34402173	rs10738926	A	G	1042.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr9	34485646	rs2274591	C	T	1309.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr9	34487782	rs4878572	C	T	411.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr9	34500595	rs4878575	G	T	878.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr9	34569010	rs9695558	T	A	2183.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr9	34617690	rs140055575	G	A	3074.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr9	34622389	rs3808869	A	C	4288.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr9	34623338	rs10972173	A	G	7856.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr9	34624175	rs10972174	C	T	805.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:2,28:0.93:30
chr9	34635598	rs4879809	T	C	1941.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr9	34650279	rs56121779	C	CA	298.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.146;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=0.826;QD=7.47;ReadPosRankSum=-0.154;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:15,25:0.62:40
chr9	34690400	rs3136658	C	T	685.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr9	34723181	rs2297132	G	A	1090.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr9	34723744	rs4878588	C	A	3224.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr9	34723935	rs2297134	C	T	2836.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr9	34724059	rs117821239	G	A	780.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.307;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=6.021;MLEAC=2;MLEAF=1.000;MQ=42.07;MQRankSum=-1.476;QD=27.88;ReadPosRankSum=0.663;SOR=2.315;set=HC	GT:AD:AF:DP	1/1:1,27:0.96:28
chr9	34724241	rs3739881	C	A	4902.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr9	34724786	rs72617336	G	A	10469.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.07;QD=42.91;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,244:1.00:244
chr9	34724796	rs150496452	T	A	10054.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.94;QD=45.91;SOR=0.721;set=HC	GT:AD:AF:DP	1/1:0,219:1.00:219
chr9	34725047	rs78716275	C	T	6046.77	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:71,256:0.78:327
chr9	34725069	rs114933270	T	A	160.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.685;ClippingRankSum=0.000;DB;DP=278;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.21;MQRankSum=-4.960;QD=0.58;ReadPosRankSum=1.831;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:239,39:0.14:278
chr9	34725742	rs62547039	T	C	7191.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:2,279:0.99:281
chr9	34726204	rs521574	G	A	106.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=26.51;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr9	34832919	rs12377823	C	T	3737.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr9	34833080	rs138460400	TC	T	3277.73	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:44,95:0.68:139
chr9	34834494	rs77822083	C	T	3184.77	.	AC=1;AF=0.500;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	0/1:227,164:0.42:391
chr9	34834880	rs112468216	A	C	4107.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr9	34834937	rs202203144	A	G	617.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.40;QD=32.51;SOR=2.948;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr9	34835273	rs521552	A	C	3742.77	.	AC=1;AF=0.500;AN=2;DB;DP=448;set=Intersection	GT:AD:AF:DP	0/1:260,187:0.42:447
chr9	34835861	rs924566	C	G	1790.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr9	34836905	rs3802426	A	G	1137.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr9	35089048	rs556766	A	C	1409.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr9	35100002	rs664357	T	C	2888.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr9	35107858	rs7039828	C	T	5827.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr9	35295984	rs661712	T	C	3122.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr9	35382559	rs199694785	AT	A	173.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.873;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=2.567;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.361;QD=1.57;ReadPosRankSum=-1.881;SOR=0.389;set=HC	GT:AD:AF:DP	0/1:80,31:0.28:111
chr9	35546735	rs1535422	A	G	22500.77	.	AC=2;AF=1.00;AN=2;DB;DP=817;set=Intersection	GT:AD:AF:DP	1/1:0,808:1.00:808
chr9	35555823	rs946483	T	C	2185.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr9	35556250	rs870978	G	C	4923.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr9	35556527	rs150786704	A	ACCTCTAAGTGCTGGCTGGGC	2630.73	.	AC=2;AF=1.00;AN=2;DB;DP=79;MQ=60.14;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr9	35559905	rs12338773	T	C	3151.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr9	35606738	rs7028425	C	G	1922.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr9	35606884	rs2275422	G	A	6516.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr9	35615896	rs869487	C	G	3309.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr9	35618523	rs10814260	G	A	7788.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:1,277:1.00:278
chr9	35660990	rs1339374	A	G	11368.77	.	AC=2;AF=1.00;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	1/1:0,411:1.00:411
chr9	35661243	rs35234337	C	T	2739.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr9	35662251	rs2297879	T	C	11931.77	.	AC=2;AF=1.00;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	1/1:0,454:1.00:454
chr9	35664624	rs1361338	C	A	2518.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr9	35677702	rs2857801	T	A	2631.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr9	35679061	rs2857802	C	T	2985.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr9	35682296	rs11998	T	A	886.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:1,32:0.97:33
chr9	35683240	rs149115565	T	TG	4770.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.826;ClippingRankSum=0.000;DB;DP=269;ExcessHet=3.0103;FS=30.624;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.69;ReadPosRankSum=-2.357;SOR=1.969;set=HC	GT:AD:AF:DP	0/1:28,192:0.87:220
chr9	35689949	rs3793538	AAA	TTT	2825.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr9	35704898	rs3215701	GA	G	3283.73	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr9	35705759	rs11541908	G	A	16389.77	.	AC=2;AF=1.00;AN=2;DB;DP=610;set=Intersection	GT:AD:AF:DP	1/1:0,596:1.00:596
chr9	35707338	rs55810625	G	A	9213.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:2,344:0.99:346
chr9	35712003	rs2295795	G	A	3671.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr9	35712823	rs2249133	G	A	5459.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr9	35720626	.	C	CT	116.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.576;ClippingRankSum=0.000;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.62;ReadPosRankSum=0.511;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:53,19:0.26:72
chr9	35722282	rs2295797	T	C	6489.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr9	35724448	rs41277065	G	A	7098.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr9	35739115	rs3833700	G	GC	7990.73	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr9	35749845	rs2236288	G	C	5414.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:1,198:0.99:199
chr9	35751221	rs1570248	C	T	12185.77	.	AC=2;AF=1.00;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	1/1:3,444:0.99:447
chr9	35752274	rs35406278	GT	G	739.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr9	35753898	rs34478611	G	A	7501.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:2,271:0.99:273
chr9	35792423	rs2228580	T	C	5345.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr9	35801233	rs1322044	T	C	3753.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:1,148:0.99:149
chr9	35801856	rs7034957	C	A	26521.77	.	AC=2;AF=1.00;AN=2;DB;DP=1012;set=Intersection	GT:AD:AF:DP	1/1:0,1007:1.00:1007
chr9	35802092	rs2890702	G	C	10878.77	.	AC=2;AF=1.00;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	1/1:5,375:0.99:380
chr9	35802583	rs5812	C	T	12953.77	.	AC=2;AF=1.00;AN=2;DB;DP=504;set=Intersection	GT:AD:AF:DP	1/1:0,485:1.00:485
chr9	35807401	rs112946422	AGCTGGGGCC	A	10943.73	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:1,246:1.00:247
chr9	35807542	rs13294264	C	T	1679.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr9	35811485	rs141090907	ACCAGGACCAGAG	A	9973.73	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr9	35826038	rs13294245	T	C	6048.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr9	35826058	rs13294256	T	C	5524.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr9	35829390	rs2381409	C	T	1493.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr9	35841071	rs2236292	C	T	2296.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr9	35842301	rs2236294	G	A	7431.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr9	35845929	rs7848557	A	C	2601.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr9	35852670	rs12346647	T	C	1641.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr9	35870001	rs7044405	T	C	13687.77	.	AC=2;AF=1.00;AN=2;DB;DP=507;set=Intersection	GT:AD:AF:DP	1/1:0,496:1.00:496
chr9	35906471	rs76452347	C	T	10784.77	.	AC=2;AF=1.00;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	1/1:0,403:1.00:403
chr9	35906601	.	C	CCCACCACCACCCCCACCACACCCCTCACCACCTCCACCACCACCACCACCACCA	6480.73	.	AC=2;AF=1.00;AN=2;DP=243;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.55;QD=39.28;SOR=5.994;set=HC	GT:AD:AF:DP	1/1:2,163:0.99:165
chr9	36063688	rs10814326	A	G	1858.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr9	36063743	rs942478	C	G	4223.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr9	36105264	rs11788747	A	G	7643.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:1,292:1.00:293
chr9	36109947	rs10972726	C	A	8769.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:0,329:1.00:329
chr9	36110063	rs10972727	T	A	7006.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr9	36110137	rs10972728	C	A	2515.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr9	36135923	rs7041851	T	C	2275.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr9	36136526	rs16932970	A	G	590.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr9	36136566	rs16932974	A	C	1186.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr9	36136587	rs3739614	T	G	1470.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr9	36141817	.	AT	A	364.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.898;ClippingRankSum=0.000;DP=182;ExcessHet=3.0103;FS=0.668;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=2.290;QD=2.05;ReadPosRankSum=2.373;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:126,52:0.29:178
chr9	36147842	.	G	A	14906.77	.	AC=2;AF=1.00;AN=2;DP=557;set=Intersection	GT:AD:AF:DP	1/1:0,553:1.00:553
chr9	36151164	rs2277172	G	A	344.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr9	36216324	.	A	ATGTGTGTGTGTGTGTGTG	2222.73	.	AC=2;AF=1.00;AN=2;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.98;QD=41.94;SOR=1.284;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr9	36276857	rs7875447	A	G	7870.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:3,284:0.99:287
chr9	36369646	rs34904529	CA	C	2488.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.491;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=0.964;MLEAC=2;MLEAF=1.000;MQ=60.12;MQRankSum=0.534;QD=14.30;ReadPosRankSum=-0.434;SOR=0.591;set=HC	GT:AD:AF:DP	1/1:18,156:0.90:174
chr9	36372737	rs12001805	C	A	1036.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr9	36378853	rs12379930	G	A	6184.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.487;ClippingRankSum=0.000;DB;DP=241;ExcessHet=3.0103;FS=2.306;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.10;ReadPosRankSum=-1.383;SOR=0.694;set=HC	GT:AD:AF:DP	1/1:3,234:0.99:237
chr9	36378901	rs35905528	C	CT	1037.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.215;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=1.510;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.30;ReadPosRankSum=1.167;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:14,64:0.82:78
chr9	36630415	rs10973007	C	G	1420.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr9	36669228	rs3780133	C	A	825.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr9	36674842	rs2274473	C	T	2014.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr9	36840623	rs3780135	G	A	3713.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr9	36864119	rs4289895	A	G	587.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr9	36882264	.	TAC	T	85.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.055;ClippingRankSum=0.000;DP=72;ExcessHet=3.0103;FS=4.958;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=2.122;QD=1.95;ReadPosRankSum=0.786;SOR=0.132;set=HC	GT:AD:AF:DP	0/1:36,8:0.18:44
chr9	37426524	rs2736664	C	T	7030.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr9	37429661	rs309459	A	G	2717.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr9	37429814	rs309458	A	G	3274.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr9	37432264	rs309455	T	C	1810.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr9	37436632	.	CCT	C	155.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.212;ClippingRankSum=0.000;DP=356;ExcessHet=3.0103;FS=1.465;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=2.963;QD=0.47;ReadPosRankSum=1.144;SOR=0.567;set=HC	GT:AD:AF:DP	0/1:297,37:0.11:334
chr9	37441808	rs309450	A	G	5712.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr9	37486916	rs913278	G	C	885.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr9	37489232	.	C	CA	95.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.035;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.19;ReadPosRankSum=1.223;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:19,11:0.37:30
chr9	37503124	rs7047823	G	A	1383.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr9	37518530	rs72739665	A	G	915.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr9	37536998	rs927930	C	T	1680.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr9	37537557	rs7044153	G	A	5927.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:2,217:0.99:219
chr9	37707392	rs2296557	T	C	1760.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr9	37708307	rs2296555	A	C	458.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr9	37708572	rs2296554	A	G	2365.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:1,86:0.99:87
chr9	37715574	rs1952126	G	C	656.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr9	37731177	rs2274323	T	G	709.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.29;SOR=1.302;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr9	37732142	rs7035345	T	C	583.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr9	37737283	rs2296552	A	G	1889.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr9	37740637	rs2281872	T	C	4683.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:1,167:0.99:168
chr9	37744565	rs34233395	T	G	3500.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:2,131:0.98:133
chr9	37745413	rs3747541	G	A	5756.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:1,216:1.00:217
chr9	37769811	rs10973531	T	G	1530.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr9	37782111	rs7158	C	T	3944.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr9	37800406	.	GAA	G	281.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.734;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;FS=1.847;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=1.556;QD=6.26;ReadPosRankSum=-1.212;SOR=0.240;set=HC	GT:AD:AF:DP	0/1:27,18:0.40:45
chr9	37887570	.	T	TA	754.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.281;ClippingRankSum=0.000;DP=100;ExcessHet=3.0103;FS=1.108;MLEAC=1;MLEAF=0.500;MQ=60.65;MQRankSum=1.480;QD=8.03;ReadPosRankSum=0.479;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:31,63:0.67:94
chr9	38015327	rs2183130	C	G	1065.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr9	38015646	rs7047952	C	G	1360.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr9	38016247	rs7037371	T	C	1259.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr9	38068532	rs3750444	A	G	1895.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:1,72:0.99:73
chr9	38395940	rs2228094	T	C	6777.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr9	38396502	rs4878199	G	A	5703.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr9	38414030	rs10545424	TCA	T	501.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.517;ClippingRankSum=0.000;DB;DP=246;ExcessHet=3.0103;FS=1.605;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.45;ReadPosRankSum=1.686;SOR=0.881;set=HC	GT:AD:AF:DP	0/1:164,41:0.20:205
chr9	38578153	rs2027241	A	G	5450.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;MQ=59.97;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr9	38586130	rs1415581	T	C	882.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr9	38603131	rs3005823	G	A	4618.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr9	40503085	rs139489532	A	G	3752.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr9	40784183	rs4339693	A	G	1481.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr9	43816656	rs199925161	T	C	1481.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.83;QD=32.21;SOR=2.737;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr9	43818062	rs78142446	T	A	6372.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr9	43860959	rs145957320	G	C	740.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr9	43861081	rs62536501	T	G	295.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=37.75;QD=26.89;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr9	44175535	rs55633393	T	C	3780.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr9	65602571	rs62561574	C	T	424.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:58,28:0.33:86
chr9	66456982	.	G	C	267.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.641;ClippingRankSum=0.000;DP=97;ExcessHet=3.0103;FS=1.431;MLEAC=1;MLEAF=0.500;MQ=50.88;MQRankSum=-2.562;QD=2.82;ReadPosRankSum=-0.631;SOR=0.397;set=HC	GT:AD:AF:DP	0/1:82,13:0.14:95
chr9	66456991	.	C	T	393.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.203;ClippingRankSum=0.000;DP=109;ExcessHet=3.0103;FS=4.835;MLEAC=1;MLEAF=0.500;MQ=51.16;MQRankSum=-2.973;QD=3.68;ReadPosRankSum=-1.044;SOR=0.234;set=HC	GT:AD:AF:DP	0/1:91,16:0.15:107
chr9	66457014	.	C	T	1674.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.523;ClippingRankSum=0.000;DP=178;ExcessHet=3.0103;FS=8.364;MLEAC=1;MLEAF=0.500;MQ=53.00;MQRankSum=-5.824;QD=9.85;ReadPosRankSum=0.211;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:119,51:0.30:170
chr9	66457016	rs10436128	C	T	607.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.479;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=7.607;MLEAC=1;MLEAF=0.500;MQ=52.95;MQRankSum=0.033;QD=3.60;ReadPosRankSum=-0.274;SOR=1.542;set=HC	GT:AD:AF:DP	0/1:142,27:0.16:169
chr9	66457019	rs7040398	G	A	3919.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.572;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.24;MQRankSum=-7.542;QD=24.05;ReadPosRankSum=1.579;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:64,99:0.61:163
chr9	66457027	rs76122331	T	A	5288.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.441;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.81;MQRankSum=-8.551;QD=27.84;ReadPosRankSum=1.470;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:60,130:0.68:190
chr9	66457030	.	T	G	80.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.562;ClippingRankSum=0.000;DP=224;ExcessHet=3.0103;FS=2.167;MLEAC=1;MLEAF=0.500;MQ=53.87;MQRankSum=-0.134;QD=0.38;ReadPosRankSum=1.129;SOR=0.990;set=HC	GT:AD:AF:DP	0/1:198,17:0.08:215
chr9	66457040	.	C	A	408.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.796;ClippingRankSum=0.000;DP=244;ExcessHet=3.0103;FS=0.731;MLEAC=1;MLEAF=0.500;MQ=54.22;MQRankSum=1.158;QD=1.94;ReadPosRankSum=-1.138;SOR=0.777;set=HC	GT:AD:AF:DP	0/1:180,31:0.15:211
chr9	66457041	.	G	A	249.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.984;ClippingRankSum=0.000;DP=246;ExcessHet=3.0103;FS=1.811;MLEAC=1;MLEAF=0.500;MQ=54.32;MQRankSum=-5.911;QD=1.05;ReadPosRankSum=1.979;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:214,23:0.10:237
chr9	66457051	rs79307166	G	C	4342.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.671;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=5.648;MLEAC=1;MLEAF=0.500;MQ=54.34;MQRankSum=-10.430;QD=21.29;ReadPosRankSum=2.020;SOR=1.102;set=HC	GT:AD:AF:DP	0/1:79,125:0.61:204
chr9	66457052	.	G	A	976.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.032;ClippingRankSum=0.000;DP=208;ExcessHet=3.0103;FS=11.122;MLEAC=1;MLEAF=0.500;MQ=54.40;MQRankSum=-9.647;QD=5.92;ReadPosRankSum=1.412;SOR=1.675;set=HC	GT:AD:AF:DP	0/1:128,37:0.22:165
chr9	66457060	.	C	T	193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.538;ClippingRankSum=0.000;DP=229;ExcessHet=3.0103;FS=4.526;MLEAC=1;MLEAF=0.500;MQ=54.66;MQRankSum=-6.929;QD=0.85;ReadPosRankSum=2.051;SOR=1.193;set=HC	GT:AD:AF:DP	0/1:208,20:0.09:228
chr9	66457062	.	G	C	184.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.519;ClippingRankSum=0.000;DP=236;ExcessHet=3.0103;FS=4.538;MLEAC=1;MLEAF=0.500;MQ=54.65;MQRankSum=-7.097;QD=0.79;ReadPosRankSum=1.650;SOR=1.299;set=HC	GT:AD:AF:DP	0/1:214,21:0.09:235
chr9	66457075	.	C	A	112.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.978;ClippingRankSum=0.000;DP=262;ExcessHet=3.0103;FS=0.868;MLEAC=1;MLEAF=0.500;MQ=55.44;MQRankSum=-4.581;QD=0.44;ReadPosRankSum=-0.067;SOR=0.514;set=HC	GT:AD:AF:DP	0/1:238,21:0.08:259
chr9	66457076	rs76994164	T	C	2397.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:183,79:0.30:262
chr9	66457077	.	T	C	1012.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.398;ClippingRankSum=0.000;DP=268;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.34;MQRankSum=-9.272;QD=3.82;ReadPosRankSum=2.828;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:224,41:0.15:265
chr9	66457078	.	C	A	94.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.887;ClippingRankSum=0.000;DP=269;ExcessHet=3.0103;FS=0.867;MLEAC=1;MLEAF=0.500;MQ=55.41;MQRankSum=-4.520;QD=0.36;ReadPosRankSum=0.156;SOR=0.514;set=HC	GT:AD:AF:DP	0/1:245,21:0.08:266
chr9	66457106	rs200733760	C	T	2660.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.388;ClippingRankSum=0.000;DB;DP=315;ExcessHet=3.0103;FS=1.004;MLEAC=1;MLEAF=0.500;MQ=55.54;MQRankSum=-15.496;QD=8.61;ReadPosRankSum=0.209;SOR=0.780;set=HC	GT:AD:AF:DP	0/1:230,79:0.26:309
chr9	66457127	rs73447819	G	A	2548.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:220,86:0.28:306
chr9	66457151	.	G	T	1304.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.676;ClippingRankSum=0.000;DP=246;ExcessHet=3.0103;FS=2.052;MLEAC=1;MLEAF=0.500;MQ=55.36;MQRankSum=-7.038;QD=5.41;ReadPosRankSum=0.086;SOR=0.795;set=HC	GT:AD:AF:DP	0/1:196,45:0.19:241
chr9	66457161	rs139907210	A	G	906.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.140;ClippingRankSum=0.000;DB;DP=227;ExcessHet=3.0103;FS=2.087;MLEAC=1;MLEAF=0.500;MQ=54.28;MQRankSum=4.190;QD=4.08;ReadPosRankSum=-0.805;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:177,45:0.20:222
chr9	66457169	.	AGAG	A	2962	.	AC=1;AF=0.500;AN=2;BRF=0.52;FR=0.5000;HP=2;HapScore=1;MGOF=144;MMLQ=24;MQ=44.33;NF=55;NR=131;PP=2962;QD=20;SC=AAATAGAACCAGAGGGAGAGA;SbPval=0.28;Source=Platypus;TC=229;TCF=59;TCR=170;TR=186;WE=66457249;WS=66457159;set=Platypus	GT:AD:AF:DP	0/1:43,186:0.81:229
chr9	66457173	.	GGA	G	1445.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.414;ClippingRankSum=0.000;DP=225;ExcessHet=3.0103;FS=2.137;MLEAC=1;MLEAF=0.500;MQ=52.65;MQRankSum=-6.785;QD=7.57;ReadPosRankSum=2.669;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:145,46:0.24:191
chr9	66457178	.	G	C	1130.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.785;ClippingRankSum=0.000;DP=198;ExcessHet=3.0103;FS=4.338;MLEAC=1;MLEAF=0.500;MQ=53.13;MQRankSum=-8.060;QD=5.86;ReadPosRankSum=2.629;SOR=1.014;set=HC	GT:AD:AF:DP	0/1:155,38:0.20:193
chr9	66457189	rs2874584	C	T	1640.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.535;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=2.920;MLEAC=1;MLEAF=0.500;MQ=52.65;MQRankSum=-4.462;QD=8.68;ReadPosRankSum=2.433;SOR=0.887;set=HC	GT:AD:AF:DP	0/1:140,49:0.26:189
chr9	66457192	.	TAGAGAG	T	606.73	.	AC=1;AF=0.500;AN=2;DP=197;set=Intersection	GT:AD:AF:DP	0/1:143,39:0.21:182
chr9	66457204	.	G	C	1421.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.827;ClippingRankSum=0.000;DP=175;ExcessHet=3.0103;FS=0.649;MLEAC=1;MLEAF=0.500;MQ=51.72;MQRankSum=-6.744;QD=8.56;ReadPosRankSum=3.167;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:123,43:0.26:166
chr9	66457209	.	AG	A	1397.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.025;ClippingRankSum=0.000;DP=208;ExcessHet=3.0103;FS=2.158;MLEAC=1;MLEAF=0.500;MQ=50.68;MQRankSum=-6.201;QD=6.92;ReadPosRankSum=3.455;SOR=0.506;set=HC	GT:AD:AF:DP	0/1:157,45:0.22:202
chr9	66457211	.	ACAGAAAAG	A	1434.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.311;ClippingRankSum=0.000;DP=205;ExcessHet=3.0103;FS=3.084;MLEAC=1;MLEAF=0.500;MQ=50.58;MQRankSum=-6.239;QD=7.47;ReadPosRankSum=3.721;SOR=0.478;set=HC	GT:AD:AF:DP	0/1:148,44:0.23:192
chr9	66457216	rs150998016	A	G	1760.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.582;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=1.353;MLEAC=1;MLEAF=0.500;MQ=50.70;MQRankSum=-1.048;QD=11.29;ReadPosRankSum=2.094;SOR=0.539;set=HC	GT:AD:AF:DP	0/1:105,51:0.33:156
chr9	66457228	.	A	C	1547.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.488;ClippingRankSum=0.000;DP=158;ExcessHet=3.0103;FS=4.230;MLEAC=1;MLEAF=0.500;MQ=49.47;MQRankSum=-5.065;QD=10.05;ReadPosRankSum=3.530;SOR=0.422;set=HC	GT:AD:AF:DP	0/1:108,46:0.30:154
chr9	66457231	rs140644333	G	GAC	1949.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.304;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=6.380;MLEAC=1;MLEAF=0.500;MQ=49.34;MQRankSum=0.574;QD=12.74;ReadPosRankSum=2.620;SOR=0.350;set=HC	GT:AD:AF:DP	0/1:99,54:0.35:153
chr9	66457233	.	G	C	1688.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.261;ClippingRankSum=0.000;DP=159;ExcessHet=3.0103;FS=4.195;MLEAC=1;MLEAF=0.500;MQ=49.21;MQRankSum=-5.041;QD=10.83;ReadPosRankSum=3.007;SOR=0.422;set=HC	GT:AD:AF:DP	0/1:108,48:0.31:156
chr9	66457234	.	A	G	252.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.100;ClippingRankSum=0.000;DP=157;ExcessHet=3.0103;FS=6.937;MLEAC=1;MLEAF=0.500;MQ=49.34;MQRankSum=-4.256;QD=1.64;ReadPosRankSum=2.450;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:136,18:0.12:154
chr9	66457237	.	G	A	1508.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.076;ClippingRankSum=0.000;DP=160;ExcessHet=3.0103;FS=6.959;MLEAC=1;MLEAF=0.500;MQ=49.17;MQRankSum=-5.304;QD=9.55;ReadPosRankSum=3.136;SOR=0.314;set=HC	GT:AD:AF:DP	0/1:115,43:0.27:158
chr9	66457241	rs113933538	G	A	1968.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.410;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=12.015;MLEAC=1;MLEAF=0.500;MQ=48.90;MQRankSum=1.359;QD=12.46;ReadPosRankSum=2.507;SOR=0.247;set=HC	GT:AD:AF:DP	0/1:102,56:0.35:158
chr9	66457253	rs73447820	A	G,C	2793.77	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=173;set=Intersection	GT:AF:DP	0/1:0.59:125
chr9	66457259	.	G	T	212.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.924;ClippingRankSum=0.000;DP=181;ExcessHet=3.0103;FS=0.971;MLEAC=1;MLEAF=0.500;MQ=48.28;MQRankSum=1.596;QD=1.19;ReadPosRankSum=-1.396;SOR=0.923;set=HC	GT:AD:AF:DP	0/1:161,18:0.10:179
chr9	66457265	.	C	A	1443.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.832;ClippingRankSum=0.000;DP=187;ExcessHet=3.0103;FS=11.343;MLEAC=1;MLEAF=0.500;MQ=48.21;MQRankSum=-4.539;QD=8.11;ReadPosRankSum=0.953;SOR=0.242;set=HC	GT:AD:AF:DP	0/1:134,44:0.25:178
chr9	66457267	.	C	T	339.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.577;ClippingRankSum=0.000;DP=189;ExcessHet=3.0103;FS=1.988;MLEAC=1;MLEAF=0.500;MQ=48.26;MQRankSum=-1.002;QD=1.99;ReadPosRankSum=1.668;SOR=0.429;set=HC	GT:AD:AF:DP	0/1:150,21:0.12:171
chr9	66457270	.	G	A	1376.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.074;ClippingRankSum=0.000;DP=189;ExcessHet=3.0103;FS=15.643;MLEAC=1;MLEAF=0.500;MQ=48.20;MQRankSum=-3.658;QD=7.40;ReadPosRankSum=1.442;SOR=0.375;set=HC	GT:AD:AF:DP	0/1:146,40:0.22:186
chr9	66457278	.	G	A	1169.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.501;ClippingRankSum=0.000;DP=179;ExcessHet=3.0103;FS=16.542;MLEAC=1;MLEAF=0.500;MQ=47.82;MQRankSum=-3.282;QD=6.61;ReadPosRankSum=0.361;SOR=0.366;set=HC	GT:AD:AF:DP	0/1:139,38:0.21:177
chr9	66457310	rs75999199	T	G	3184.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.611;ClippingRankSum=0.000;DB;DP=224;ExcessHet=3.0103;FS=7.624;MLEAC=1;MLEAF=0.500;MQ=48.80;MQRankSum=-5.598;QD=14.28;ReadPosRankSum=0.907;SOR=0.346;set=HC	GT:AD:AF:DP	0/1:137,86:0.39:223
chr9	66457313	rs79959518	G	A	5089.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.691;ClippingRankSum=0.000;DB;DP=232;ExcessHet=3.0103;FS=8.471;MLEAC=1;MLEAF=0.500;MQ=48.90;MQRankSum=-9.354;QD=22.03;ReadPosRankSum=-0.764;SOR=0.336;set=HC	GT:AD:AF:DP	0/1:98,133:0.58:231
chr9	66457317	rs77524857	C	T	3299.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.431;ClippingRankSum=0.000;DB;DP=240;ExcessHet=3.0103;FS=7.315;MLEAC=1;MLEAF=0.500;MQ=48.90;MQRankSum=-6.247;QD=13.81;ReadPosRankSum=0.984;SOR=0.360;set=HC	GT:AD:AF:DP	0/1:150,89:0.37:239
chr9	66457324	rs80001863	G	A	3276.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.207;ClippingRankSum=0.000;DB;DP=252;ExcessHet=3.0103;FS=12.356;MLEAC=1;MLEAF=0.500;MQ=49.19;MQRankSum=-6.856;QD=13.05;ReadPosRankSum=0.870;SOR=0.287;set=HC	GT:AD:AF:DP	0/1:160,91:0.36:251
chr9	66457388	rs1809739	T	G	1248.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:168,57:0.25:225
chr9	66457399	rs78461570	T	G	136.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:209,32:0.13:241
chr9	66457440	.	A	G	2962	.	AC=1;AF=0.500;AN=2;BRF=0.51;FR=0.5000;HP=3;HapScore=1;MMLQ=23;MQ=48.83;NF=113;NR=76;PP=2962;QD=20;SC=CCCCCCACCCAGGAAAACCAA;SbPval=0.74;Source=Platypus;TC=508;TCF=279;TCR=229;TR=189;WE=66457488;set=Platypus	GT:AD:AF:DP	0/1:319,189:0.37:508
chr9	66457451	rs79122745	T	C	833.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.221;ClippingRankSum=0.000;DB;DP=369;ExcessHet=3.0103;FS=7.019;MLEAC=1;MLEAF=0.500;MQ=58.32;MQRankSum=-4.459;QD=2.27;ReadPosRankSum=-2.284;SOR=0.878;set=HC	GT:AD:AF:DP	0/1:323,44:0.12:367
chr9	66457465	rs11262297	T	G	3250.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.368;ClippingRankSum=0.000;DB;DP=385;ExcessHet=3.0103;FS=3.048;MLEAC=1;MLEAF=0.500;MQ=58.80;MQRankSum=-8.311;QD=8.55;ReadPosRankSum=1.221;SOR=0.585;set=HC	GT:AD:AF:DP	0/1:273,107:0.28:380
chr9	66457467	.	G	GTGTGT,GTT	1770.73	.	AC=1,0;AF=0.500,0.00;AN=2;DP=391;set=Intersection	GT:AF:DP	0/1:0.13:388
chr9	66457475	rs55747937	C	T	5453.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.013;ClippingRankSum=0.000;DB;DP=446;ExcessHet=3.0103;FS=1.144;MLEAC=1;MLEAF=0.500;MQ=58.39;MQRankSum=-9.643;QD=12.42;ReadPosRankSum=-2.256;SOR=0.771;set=HC	GT:AD:AF:DP	0/1:280,159:0.36:439
chr9	66457480	rs77629849	G	A	3476.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.518;ClippingRankSum=0.000;DB;DP=483;ExcessHet=3.0103;FS=1.271;MLEAC=1;MLEAF=0.500;MQ=58.39;MQRankSum=-7.223;QD=7.35;ReadPosRankSum=-5.538;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:351,122:0.26:473
chr9	66457498	rs113875913	G	T	299.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.604;ClippingRankSum=0.000;DB;DP=585;ExcessHet=3.0103;FS=1.667;MLEAC=1;MLEAF=0.500;MQ=58.22;MQRankSum=-1.656;QD=0.54;ReadPosRankSum=-8.055;SOR=0.933;set=HC	GT:AD:AF:DP	0/1:483,77:0.14:560
chr9	66457535	rs74360065	T	C	3077.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.771;ClippingRankSum=0.000;DB;DP=713;ExcessHet=3.0103;FS=1.998;MLEAC=1;MLEAF=0.500;MQ=57.09;MQRankSum=-2.745;QD=4.40;ReadPosRankSum=1.332;SOR=0.742;set=HC	GT:AD:AF:DP	0/1:510,190:0.27:700
chr9	66457549	rs77706622	A	G	8295.77	.	AC=1;AF=0.500;AN=2;DB;DP=682;set=Intersection	GT:AD:AF:DP	0/1:413,226:0.35:639
chr9	66457562	rs79475537	C	T	7020.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.350;ClippingRankSum=0.000;DB;DP=629;ExcessHet=3.0103;FS=2.637;MLEAC=1;MLEAF=0.500;MQ=56.55;MQRankSum=-2.246;QD=11.31;ReadPosRankSum=2.697;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:415,206:0.33:621
chr9	66457565	.	G	C	4984.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.772;ClippingRankSum=0.000;DP=626;ExcessHet=3.0103;FS=2.060;MLEAC=1;MLEAF=0.500;MQ=56.39;MQRankSum=1.483;QD=8.07;ReadPosRankSum=1.161;SOR=0.568;set=HC	GT:AD:AF:DP	0/1:463,155:0.25:618
chr9	66457572	rs113252894	A	T	604.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.271;ClippingRankSum=0.000;DB;DP=596;ExcessHet=3.0103;FS=2.064;MLEAC=1;MLEAF=0.500;MQ=56.27;MQRankSum=-5.005;QD=1.03;ReadPosRankSum=2.914;SOR=1.131;set=HC	GT:AD:AF:DP	0/1:533,55:0.09:588
chr9	66457581	.	T	C	796.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.066;ClippingRankSum=0.000;DP=574;ExcessHet=3.0103;FS=3.251;MLEAC=1;MLEAF=0.500;MQ=56.15;MQRankSum=-5.323;QD=1.40;ReadPosRankSum=3.462;SOR=1.170;set=HC	GT:AD:AF:DP	0/1:511,57:0.10:568
chr9	66457585	rs78196222	G	T	10176.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.844;ClippingRankSum=0.000;DB;DP=544;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.03;MQRankSum=-0.390;QD=18.92;ReadPosRankSum=-0.866;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:270,268:0.50:538
chr9	66457588	rs10907850	T	C	740.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.212;ClippingRankSum=0.000;DB;DP=528;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.01;MQRankSum=-1.392;QD=1.42;ReadPosRankSum=1.679;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:467,55:0.11:522
chr9	66457593	rs141224694	C	A	1938.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.381;ClippingRankSum=0.000;DB;DP=498;ExcessHet=3.0103;FS=2.493;MLEAC=1;MLEAF=0.500;MQ=55.86;MQRankSum=-4.544;QD=4.05;ReadPosRankSum=1.802;SOR=0.981;set=HC	GT:AD:AF:DP	0/1:403,76:0.16:479
chr9	66457594	rs1809740	A	G	14276.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=493;set=Intersection	GT:AD:AF:DP	0/1:103,384:0.79:487
chr9	66457595	rs78450472	G	A	73.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.253;ClippingRankSum=0.000;DB;DP=488;ExcessHet=3.0103;FS=3.954;MLEAC=1;MLEAF=0.500;MQ=55.82;MQRankSum=-8.814;QD=0.16;ReadPosRankSum=1.719;SOR=0.845;set=HC	GT:AD:AF:DP	0/1:426,33:0.07:459
chr9	66457601	rs79204868	G	T	4426.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.551;ClippingRankSum=0.000;DB;DP=465;ExcessHet=3.0103;FS=1.963;MLEAC=1;MLEAF=0.500;MQ=55.60;MQRankSum=5.735;QD=10.39;ReadPosRankSum=-2.018;SOR=0.519;set=HC	GT:AD:AF:DP	0/1:298,128:0.30:426
chr9	66457605	rs55842063	C	T	5227.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.596;ClippingRankSum=0.000;DB;DP=443;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.42;MQRankSum=-5.515;QD=11.96;ReadPosRankSum=1.917;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:291,146:0.33:437
chr9	66457609	rs12380199	G	A	1528.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.706;ClippingRankSum=0.000;DB;DP=415;ExcessHet=3.0103;FS=5.060;MLEAC=1;MLEAF=0.500;MQ=55.25;MQRankSum=-3.809;QD=3.74;ReadPosRankSum=4.415;SOR=1.153;set=HC	GT:AD:AF:DP	0/1:347,62:0.15:409
chr9	66457612	.	C	A	2676.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.075;ClippingRankSum=0.000;DP=402;ExcessHet=3.0103;FS=2.766;MLEAC=1;MLEAF=0.500;MQ=55.18;MQRankSum=6.732;QD=6.78;ReadPosRankSum=-1.240;SOR=0.529;set=HC	GT:AD:AF:DP	0/1:312,83:0.21:395
chr9	66457613	rs144074368	C	G	3868.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.380;ClippingRankSum=0.000;DB;DP=395;ExcessHet=3.0103;FS=1.435;MLEAC=1;MLEAF=0.500;MQ=55.12;MQRankSum=4.106;QD=11.87;ReadPosRankSum=0.075;SOR=0.595;set=HC	GT:AD:AF:DP	0/1:220,106:0.33:326
chr9	66457618	.	C	T	876.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.384;ClippingRankSum=0.000;DP=370;ExcessHet=3.0103;FS=3.795;MLEAC=1;MLEAF=0.500;MQ=54.77;MQRankSum=-3.258;QD=2.41;ReadPosRankSum=3.226;SOR=1.008;set=HC	GT:AD:AF:DP	0/1:319,45:0.12:364
chr9	66457620	rs74362572	C	T	3777.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.728;ClippingRankSum=0.000;DB;DP=368;ExcessHet=3.0103;FS=3.916;MLEAC=1;MLEAF=0.500;MQ=54.66;MQRankSum=5.615;QD=10.49;ReadPosRankSum=-2.847;SOR=0.499;set=HC	GT:AD:AF:DP	0/1:255,105:0.29:360
chr9	66457626	.	G	A	822.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.008;ClippingRankSum=0.000;DP=345;ExcessHet=3.0103;FS=1.330;MLEAC=1;MLEAF=0.500;MQ=54.42;MQRankSum=-3.103;QD=2.42;ReadPosRankSum=2.464;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:298,42:0.12:340
chr9	66457633	.	G	A	1184.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.683;ClippingRankSum=0.000;DP=306;ExcessHet=3.0103;FS=0.588;MLEAC=1;MLEAF=0.500;MQ=54.11;MQRankSum=5.366;QD=3.92;ReadPosRankSum=1.210;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:253,49:0.16:302
chr9	66457634	.	G	T	841.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.144;ClippingRankSum=0.000;DP=300;ExcessHet=3.0103;FS=0.656;MLEAC=1;MLEAF=0.500;MQ=54.08;MQRankSum=-2.888;QD=2.82;ReadPosRankSum=1.158;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:259,39:0.13:298
chr9	66457646	rs78339757	G	T	89.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.700;ClippingRankSum=0.000;DB;DP=261;ExcessHet=3.0103;FS=12.977;MLEAC=1;MLEAF=0.500;MQ=53.21;MQRankSum=-6.082;QD=0.36;ReadPosRankSum=2.000;SOR=0.197;set=HC	GT:AD:AF:DP	0/1:215,34:0.14:249
chr9	66457652	rs1809741	C	A	3328.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:153,85:0.36:238
chr9	66457664	rs78392104	T	C	2561.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:129,66:0.34:195
chr9	66457675	rs75677823	G	T	587.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.241;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=0.880;MLEAC=1;MLEAF=0.500;MQ=50.72;MQRankSum=5.248;QD=3.63;ReadPosRankSum=-1.299;SOR=0.547;set=HC	GT:AD:AF:DP	0/1:135,27:0.17:162
chr9	66457690	.	C	G	505.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.370;ClippingRankSum=0.000;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=50.76;MQRankSum=4.523;QD=4.15;ReadPosRankSum=-2.140;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:103,19:0.16:122
chr9	66457691	rs111684071	A	C	901.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:88,29:0.25:117
chr9	66457730	.	A	C	2693	.	AC=1;AF=0.500;AN=2;BRF=0.27;FR=0.5000;HP=3;HapScore=1;MGOF=143;MMLQ=28;MQ=42.65;NF=2;NR=54;PP=2693;QD=20;SC=CTGGCGAAGAAAATGTCCTTC;SbPval=0.33;Source=Platypus;TC=94;TCF=2;TCR=92;TR=56;WE=66457750;WS=66457720;set=Platypus	GT:AD:AF:DP	0/1:38,56:0.60:94
chr9	66457742	.	T	C	2693	.	AC=1;AF=0.500;AN=2;BRF=0.27;FR=0.5000;HP=3;HapScore=1;MGOF=143;MMLQ=28;MQ=42.03;NF=1;NR=46;PP=2693;QD=20;SC=ATGTCCTTCCTCTGGGGAAAG;SbPval=0.47;Source=Platypus;TC=74;TCF=1;TCR=73;TR=47;WE=66457750;WS=66457720;set=Platypus	GT:AD:AF:DP	0/1:27,47:0.64:74
chr9	66499220	rs10907866	C	T	590.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.009;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.60;MQRankSum=-1.986;QD=3.79;ReadPosRankSum=-1.819;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:117,39:0.25:156
chr9	66499292	rs77998783	T	C	122.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.914;ClippingRankSum=0.000;DB;DP=226;ExcessHet=3.0103;FS=2.406;MLEAC=1;MLEAF=0.500;MQ=53.68;MQRankSum=-6.473;QD=0.54;ReadPosRankSum=1.540;SOR=0.459;set=HC	GT:AD:AF:DP	0/1:192,34:0.15:226
chr9	66499336	rs185058144	A	C	313.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.576;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=6.609;MLEAC=1;MLEAF=0.500;MQ=50.63;MQRankSum=-3.787;QD=2.16;ReadPosRankSum=1.284;SOR=0.286;set=HC	GT:AD:AF:DP	0/1:113,32:0.22:145
chr9	66499356	rs201959709	G	A	303.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.924;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=8.022;MLEAC=1;MLEAF=0.500;MQ=47.83;MQRankSum=-2.073;QD=2.95;ReadPosRankSum=-0.797;SOR=0.216;set=HC	GT:AD:AF:DP	0/1:77,26:0.25:103
chr9	68372217	rs190581388	C	T	319.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.105;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=40.00;MQRankSum=-1.535;QD=12.30;ReadPosRankSum=-0.290;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:16,10:0.38:26
chr9	68372238	rs374781801	G	A	235.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.391;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=41.87;MQRankSum=1.254;QD=6.20;ReadPosRankSum=-0.415;SOR=0.994;set=HC	GT:AD:AF:DP	0/1:26,12:0.32:38
chr9	68372264	rs140520174	C	T	214.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.183;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=15.740;MLEAC=1;MLEAF=0.500;MQ=44.93;MQRankSum=-4.125;QD=3.46;ReadPosRankSum=-0.539;SOR=3.745;set=HC	GT:AD:AF:DP	0/1:48,14:0.23:62
chr9	68372282	rs147422696	G	T	531.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-3.196;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=1.043;MLEAC=1;MLEAF=0.500;MQ=46.62;MQRankSum=-0.767;QD=5.60;ReadPosRankSum=1.657;SOR=0.530;set=HC	GT:AD:AF:DP	0/1:76,19:0.20:95
chr9	68372283	rs150871961	C	T	531.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.619;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=1.055;MLEAC=1;MLEAF=0.500;MQ=46.63;MQRankSum=-0.819;QD=5.54;ReadPosRankSum=1.619;SOR=0.516;set=HC	GT:AD:AF:DP	0/1:77,19:0.20:96
chr9	68372284	rs140186551	T	G	695.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.772;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=9.982;MLEAC=1;MLEAF=0.500;MQ=46.94;MQRankSum=-1.662;QD=7.17;ReadPosRankSum=-2.504;SOR=1.816;set=HC	GT:AD:AF:DP	0/1:63,34:0.35:97
chr9	68372296	.	T	C	264.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.852;ClippingRankSum=0.000;DP=121;ExcessHet=3.0103;FS=2.637;MLEAC=1;MLEAF=0.500;MQ=48.21;MQRankSum=-1.594;QD=2.19;ReadPosRankSum=-1.244;SOR=1.160;set=HC	GT:AD:AF:DP	0/1:107,14:0.12:121
chr9	68372298	.	CC	TG	282.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.024;ClippingRankSum=0.000;DP=126;ExcessHet=3.0103;FS=4.177;JOINED;MLEAC=1;MLEAF=0.500;MQ=48.41;MQRankSum=-1.476;QD=2.24;ReadPosRankSum=-1.285;SOR=1.370;set=HC	GT:AD:AF:DP	0/1:111,15:0.12:126
chr9	68372313	.	G	A	352.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.078;ClippingRankSum=0.000;DP=170;ExcessHet=3.0103;FS=4.307;MLEAC=1;MLEAF=0.500;MQ=50.38;MQRankSum=-1.435;QD=2.08;ReadPosRankSum=-0.921;SOR=1.154;set=HC	GT:AD:AF:DP	0/1:147,23:0.14:170
chr9	68372328	rs79919811	A	G	1716.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:138,89:0.39:227
chr9	68372337	rs140269697	C	T	359.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.226;ClippingRankSum=0.000;DB;DP=248;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.70;MQRankSum=-2.136;QD=1.45;ReadPosRankSum=1.736;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:222,26:0.10:248
chr9	68372352	rs78404990	G	A	1261.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.841;ClippingRankSum=0.000;DB;DP=272;ExcessHet=3.0103;FS=1.153;MLEAC=1;MLEAF=0.500;MQ=53.09;MQRankSum=-2.654;QD=4.78;ReadPosRankSum=-1.438;SOR=0.792;set=HC	GT:AD:AF:DP	0/1:206,58:0.22:264
chr9	68372354	rs80225136	A	G	253.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.714;ClippingRankSum=0.000;DB;DP=274;ExcessHet=3.0103;FS=0.775;MLEAC=1;MLEAF=0.500;MQ=53.03;MQRankSum=-2.148;QD=0.93;ReadPosRankSum=-2.092;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:249,25:0.09:274
chr9	68372357	rs77799799	T	C	7017.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:85,196:0.70:281
chr9	68372367	rs79888407	C	A	142.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.903;ClippingRankSum=0.000;DB;DP=301;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.69;MQRankSum=-1.588;QD=0.47;ReadPosRankSum=-4.644;SOR=0.761;set=HC	GT:AD:AF:DP	0/1:278,23:0.08:301
chr9	68372400	rs375621226	G	A	1340.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.773;ClippingRankSum=0.000;DB;DP=299;ExcessHet=3.0103;FS=0.539;MLEAC=1;MLEAF=0.500;MQ=52.20;MQRankSum=-2.153;QD=4.61;ReadPosRankSum=1.664;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:234,57:0.20:291
chr9	68372402	rs78803668	G	A	4077.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.642;ClippingRankSum=0.000;DB;DP=294;ExcessHet=3.0103;FS=0.910;MLEAC=1;MLEAF=0.500;MQ=52.08;MQRankSum=-1.214;QD=14.36;ReadPosRankSum=1.008;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:124,160:0.56:284
chr9	68372415	.	T	C	169.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.424;ClippingRankSum=0.000;DP=279;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.94;MQRankSum=1.431;QD=0.61;ReadPosRankSum=1.076;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:235,42:0.15:277
chr9	68372420	rs77874833	C	G	2328.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.652;ClippingRankSum=0.000;DB;DP=266;ExcessHet=3.0103;FS=1.719;MLEAC=1;MLEAF=0.500;MQ=52.23;MQRankSum=-2.515;QD=8.75;ReadPosRankSum=1.412;SOR=0.855;set=HC	GT:AD:AF:DP	0/1:196,70:0.26:266
chr9	68372430	rs376337921	G	A	2165.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.681;ClippingRankSum=0.000;DB;DP=239;ExcessHet=3.0103;FS=1.155;MLEAC=1;MLEAF=0.500;MQ=52.43;MQRankSum=-2.270;QD=9.06;ReadPosRankSum=1.137;SOR=0.802;set=HC	GT:AD:AF:DP	0/1:174,65:0.27:239
chr9	68372434	rs368849262	C	T	2111.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.070;ClippingRankSum=0.000;DB;DP=226;ExcessHet=3.0103;FS=0.562;MLEAC=1;MLEAF=0.500;MQ=52.59;MQRankSum=-2.450;QD=9.34;ReadPosRankSum=0.712;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:163,63:0.28:226
chr9	68372441	rs371275705	C	T	1949.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.108;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.08;MQRankSum=-2.546;QD=9.46;ReadPosRankSum=0.798;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:148,58:0.28:206
chr9	68409477	rs73649015	A	T	251.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.780;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.52;MQRankSum=-2.638;QD=25.18;ReadPosRankSum=0.984;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:3,7:0.70:10
chr9	68409494	rs368172308	T	G	141.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.649;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=5.497;MLEAC=1;MLEAF=0.500;MQ=47.63;MQRankSum=-1.366;QD=9.45;ReadPosRankSum=-0.791;SOR=0.078;set=HC	GT:AD:AF:DP	0/1:7,8:0.53:15
chr9	68409521	rs112354844	A	G	500.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.347;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=12.692;MLEAC=1;MLEAF=0.500;MQ=50.44;MQRankSum=-2.329;QD=15.65;ReadPosRankSum=1.151;SOR=0.039;set=HC	GT:AD:AF:DP	0/1:16,16:0.50:32
chr9	68409533	rs113576738	G	T	617.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.661;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=17.513;MLEAC=1;MLEAF=0.500;MQ=50.16;MQRankSum=-2.018;QD=15.44;ReadPosRankSum=1.810;SOR=0.039;set=HC	GT:AD:AF:DP	0/1:22,18:0.45:40
chr9	68409539	rs111658015	C	A	200.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.301;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=16.965;MLEAC=1;MLEAF=0.500;MQ=50.14;MQRankSum=-4.471;QD=4.36;ReadPosRankSum=-1.920;SOR=4.219;set=HC	GT:AD:AF:DP	0/1:35,11:0.24:46
chr9	68409560	.	G	C	615.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.987;ClippingRankSum=0.000;DP=55;ExcessHet=3.0103;FS=12.223;MLEAC=1;MLEAF=0.500;MQ=50.25;MQRankSum=-1.723;QD=11.20;ReadPosRankSum=4.047;SOR=0.086;set=HC	GT:AD:AF:DP	0/1:37,18:0.33:55
chr9	68409565	rs112081340	G	A	600.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.104;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=11.435;MLEAC=1;MLEAF=0.500;MQ=50.97;MQRankSum=-2.221;QD=10.18;ReadPosRankSum=3.979;SOR=0.112;set=HC	GT:AD:AF:DP	0/1:41,18:0.31:59
chr9	68409572	.	G	A	678.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.963;ClippingRankSum=0.000;DP=64;ExcessHet=3.0103;FS=13.743;MLEAC=1;MLEAF=0.500;MQ=51.32;MQRankSum=-1.832;QD=10.61;ReadPosRankSum=2.420;SOR=0.094;set=HC	GT:AD:AF:DP	0/1:44,20:0.31:64
chr9	68409580	rs199507432	G	A	657.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.029;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=13.252;MLEAC=1;MLEAF=0.500;MQ=51.37;MQRankSum=-1.929;QD=9.40;ReadPosRankSum=1.469;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:50,20:0.29:70
chr9	68409584	.	C	T	696.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.549;ClippingRankSum=0.000;DP=75;ExcessHet=3.0103;FS=12.818;MLEAC=1;MLEAF=0.500;MQ=51.53;MQRankSum=-5.966;QD=9.54;ReadPosRankSum=-1.061;SOR=2.457;set=HC	GT:AD:AF:DP	0/1:52,21:0.29:73
chr9	68409590	.	C	T	807.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.627;ClippingRankSum=0.000;DP=83;ExcessHet=3.0103;FS=9.022;MLEAC=1;MLEAF=0.500;MQ=52.09;MQRankSum=-5.846;QD=10.10;ReadPosRankSum=-1.454;SOR=1.891;set=HC	GT:AD:AF:DP	0/1:54,26:0.33:80
chr9	68409592	.	G	T	597.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.328;ClippingRankSum=0.000;DP=89;ExcessHet=3.0103;FS=9.747;MLEAC=1;MLEAF=0.500;MQ=52.32;MQRankSum=-2.608;QD=6.95;ReadPosRankSum=0.558;SOR=0.160;set=HC	GT:AD:AF:DP	0/1:66,20:0.23:86
chr9	68409600	rs74192497	C	A	537.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.181;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=9.080;MLEAC=1;MLEAF=0.500;MQ=53.01;MQRankSum=-3.111;QD=5.03;ReadPosRankSum=0.505;SOR=0.191;set=HC	GT:AD:AF:DP	0/1:87,20:0.19:107
chr9	68409602	.	G	C	931.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.257;ClippingRankSum=0.000;DP=114;ExcessHet=3.0103;FS=8.377;MLEAC=1;MLEAF=0.500;MQ=52.87;MQRankSum=-7.109;QD=8.47;ReadPosRankSum=-0.758;SOR=1.529;set=HC	GT:AD:AF:DP	0/1:70,40:0.36:110
chr9	68409623	rs376674886	G	A	2848.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.286;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=3.351;MLEAC=1;MLEAF=0.500;MQ=53.87;MQRankSum=-9.638;QD=21.91;ReadPosRankSum=-2.070;SOR=1.058;set=HC	GT:AD:AF:DP	0/1:57,73:0.56:130
chr9	68409631	rs78137483	T	C	2947.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.413;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=0.665;MLEAC=1;MLEAF=0.500;MQ=53.68;MQRankSum=-9.231;QD=22.00;ReadPosRankSum=-3.412;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:55,79:0.59:134
chr9	68409659	rs34008877	C	G	2353.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.021;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=2.691;MLEAC=1;MLEAF=0.500;MQ=54.38;MQRankSum=-9.826;QD=13.15;ReadPosRankSum=-1.411;SOR=0.907;set=HC	GT:AD:AF:DP	0/1:72,107:0.60:179
chr9	68409677	rs113826078	A	G	2973.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.734;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=0.525;MLEAC=1;MLEAF=0.500;MQ=54.22;MQRankSum=-10.556;QD=13.77;ReadPosRankSum=-1.699;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:77,139:0.64:216
chr9	68409702	rs79189381	C	G	2713.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.401;ClippingRankSum=0.000;DB;DP=240;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.98;MQRankSum=-8.488;QD=11.35;ReadPosRankSum=3.165;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:97,142:0.59:239
chr9	68409745	rs73649016	C	G	3156.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:73,138:0.65:211
chr9	68409789	rs79786341	G	C	1958.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.915;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=9.881;MLEAC=1;MLEAF=0.500;MQ=52.91;MQRankSum=-8.385;QD=14.19;ReadPosRankSum=-0.771;SOR=1.451;set=HC	GT:AD:AF:DP	0/1:52,86:0.62:138
chr9	68409869	rs78838824	C	T	225.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.048;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=7.870;MLEAC=1;MLEAF=0.500;MQ=47.87;MQRankSum=-3.289;QD=4.26;ReadPosRankSum=-1.295;SOR=0.090;set=HC	GT:AD:AF:DP	0/1:43,10:0.19:53
chr9	68409872	.	A	C	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.093;ClippingRankSum=0.000;DP=52;ExcessHet=3.0103;FS=7.844;MLEAC=1;MLEAF=0.500;MQ=48.42;MQRankSum=-1.013;QD=0.71;ReadPosRankSum=-1.552;SOR=0.048;set=HC	GT:AD:AF:DP	0/1:47,5:0.10:52
chr9	68409915	.	G	C	127.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.627;ClippingRankSum=0.000;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=48.97;MQRankSum=-2.653;QD=5.56;ReadPosRankSum=-2.835;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:18,5:0.22:23
chr9	68409916	rs200049426	T	C	124.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.769;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=48.97;MQRankSum=-2.653;QD=5.42;ReadPosRankSum=-2.910;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:18,5:0.22:23
chr9	68409923	.	C	A	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.102;ClippingRankSum=0.000;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=49.96;MQRankSum=-2.198;QD=1.85;ReadPosRankSum=-2.010;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:19,3:0.14:22
chr9	68409929	.	T	G	340	.	AC=1;AF=0.500;AN=2;BRF=0.66;FR=0.5000;HP=3;HapScore=2;MGOF=53;MMLQ=28;MQ=41.19;NF=1;NR=5;PP=340;QD=62.4618687579;SC=TCTACTGTGGTGCTCTCTCTT;SbPval=0.82;Source=Platypus;TC=31;TCF=8;TCR=23;TR=6;WE=68409937;WS=68409894;set=Platypus	GT:AD:AF:DP	0/1:25,6:0.19:31
chr9	68415193	rs80256038	T	A	6307.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:83,195:0.70:278
chr9	68415196	rs4454394	C	T	618.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.153;ClippingRankSum=0.000;DB;DP=310;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.69;MQRankSum=2.085;QD=2.07;ReadPosRankSum=0.885;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:244,55:0.18:299
chr9	68415212	rs143303312	A	T	807.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.560;ClippingRankSum=0.000;DB;DP=463;ExcessHet=3.0103;FS=1.497;MLEAC=1;MLEAF=0.500;MQ=58.94;MQRankSum=2.711;QD=1.82;ReadPosRankSum=0.128;SOR=0.864;set=HC	GT:AD:AF:DP	0/1:372,73:0.16:445
chr9	68415216	rs71234092	G	A	4430.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.343;ClippingRankSum=0.000;DB;DP=501;ExcessHet=3.0103;FS=1.785;MLEAC=1;MLEAF=0.500;MQ=59.00;MQRankSum=-2.314;QD=9.35;ReadPosRankSum=1.024;SOR=0.562;set=HC	GT:AD:AF:DP	0/1:287,187:0.39:474
chr9	68415231	rs140259548	T	G	132.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.468;ClippingRankSum=0.000;DB;DP=630;ExcessHet=3.0103;FS=0.793;MLEAC=1;MLEAF=0.500;MQ=59.18;MQRankSum=-4.799;QD=0.22;ReadPosRankSum=1.424;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:527,80:0.13:607
chr9	68415338	rs75019967	A	C	1833.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.007;ClippingRankSum=0.000;DB;DP=672;ExcessHet=3.0103;FS=1.601;MLEAC=1;MLEAF=0.500;MQ=59.76;MQRankSum=1.871;QD=2.75;ReadPosRankSum=-0.235;SOR=0.541;set=HC	GT:AD:AF:DP	0/1:560,106:0.16:666
chr9	68415386	rs1844035	G	A	473.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.215;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.64;MQRankSum=1.442;QD=3.08;ReadPosRankSum=-0.593;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:120,34:0.22:154
chr9	68415388	rs4928837	A	T	2955.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:47,98:0.68:145
chr9	68427750	rs78840873	T	C	1280.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.013;ClippingRankSum=0.000;DB;DP=282;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.35;MQRankSum=-0.846;QD=4.54;ReadPosRankSum=-0.676;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:208,74:0.26:282
chr9	68427786	rs4300101	C	T	10936.77	.	AC=1;AF=0.500;AN=2;DB;DP=470;set=Intersection	GT:AD:AF:DP	0/1:62,408:0.87:470
chr9	68427800	rs77055654	C	T	2026.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.127;ClippingRankSum=0.000;DB;DP=510;ExcessHet=3.0103;FS=0.603;MLEAC=1;MLEAF=0.500;MQ=54.03;MQRankSum=-0.520;QD=3.97;ReadPosRankSum=0.569;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:375,135:0.26:510
chr9	68427818	rs111699417	G	GA	237.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.334;ClippingRankSum=0.000;DB;DP=536;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.70;MQRankSum=-7.581;QD=0.45;ReadPosRankSum=-0.243;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:453,74:0.14:527
chr9	68427877	rs4568707	G	A	10797.77	.	AC=1;AF=0.500;AN=2;DB;DP=537;set=Intersection	GT:AD:AF:DP	0/1:80,457:0.85:537
chr9	68427938	rs113084687	CAT	C	1408.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.377;ClippingRankSum=0.000;DB;DP=223;ExcessHet=3.0103;FS=1.409;MLEAC=1;MLEAF=0.500;MQ=57.51;MQRankSum=-1.319;QD=6.37;ReadPosRankSum=-0.573;SOR=0.871;set=HC	GT:AD:AF:DP	0/1:173,48:0.22:221
chr9	68427956	rs4316243	T	C	5150.85	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.800;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=2.236;MLEAC=1;MLEAF=0.500;MQ=57.11;MQRankSum=-3.308;QD=27.54;ReadPosRankSum=0.949;SOR=0.438;set=HC	GT:AD:AF:DP	0/1:20,167:0.89:187
chr9	68427956	.	TT	CA,CT	2962	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.38;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=36;MMLQ=28;MQ=52.56;NF=6,46;NR=16,124;PP=788,2962;QD=38.2485397665;SC=ATATATTCAATTGCTACTAAA;SbPval=0.53;Source=Platypus;TC=191;TCF=50;TCR=141;TR=22,170;WE=68427965;WS=68427928;set=Platypus	GT:AF:DP	0/1:0.12:191
chr9	68427957	.	T	A	141.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.343;ClippingRankSum=0.000;DP=184;ExcessHet=3.0103;FS=0.922;MLEAC=1;MLEAF=0.500;MQ=57.06;MQRankSum=-2.323;QD=0.77;ReadPosRankSum=1.973;SOR=0.533;set=HC	GT:AD:AF:DP	0/1:160,24:0.13:184
chr9	68428005	rs77542827	G	C	46.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:77,10:0.11:87
chr9	68433462	rs111392331	T	C	6096.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.345;ClippingRankSum=0.000;DB;DP=1066;ExcessHet=3.0103;FS=1.844;MLEAC=1;MLEAF=0.500;MQ=52.78;MQRankSum=-0.815;QD=5.73;ReadPosRankSum=4.961;SOR=0.546;set=HC	GT:AD:AF:DP	0/1:701,363:0.34:1064
chr9	68433464	rs79004307	C	T	7161.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.821;ClippingRankSum=0.000;DB;DP=1064;ExcessHet=3.0103;FS=1.296;MLEAC=1;MLEAF=0.500;MQ=52.76;MQRankSum=-3.559;QD=6.74;ReadPosRankSum=4.009;SOR=0.841;set=HC	GT:AD:AF:DP	0/1:795,267:0.25:1062
chr9	68433468	rs75281072	G	C	13043.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.183;ClippingRankSum=0.000;DB;DP=1040;ExcessHet=3.0103;FS=1.145;MLEAC=1;MLEAF=0.500;MQ=52.90;MQRankSum=-7.065;QD=12.58;ReadPosRankSum=-0.464;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:656,381:0.37:1037
chr9	68433481	rs112175502	T	TCTC	703.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.565;ClippingRankSum=0.000;DB;DP=989;ExcessHet=3.0103;FS=6.846;MLEAC=1;MLEAF=0.500;MQ=53.03;MQRankSum=-10.962;QD=0.72;ReadPosRankSum=-7.185;SOR=1.238;set=HC	GT:AD:AF:DP	0/1:887,90:0.09:977
chr9	68433510	rs75661796	C	G	5188.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.949;ClippingRankSum=0.000;DB;DP=845;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.45;MQRankSum=-9.211;QD=6.26;ReadPosRankSum=3.659;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:595,234:0.28:829
chr9	68433522	rs75582795	G	A	1606.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.531;ClippingRankSum=0.000;DB;DP=762;ExcessHet=3.0103;FS=11.385;MLEAC=1;MLEAF=0.500;MQ=50.58;MQRankSum=-6.603;QD=2.14;ReadPosRankSum=-0.231;SOR=1.135;set=HC	GT:AD:AF:DP	0/1:602,150:0.20:752
chr9	68433523	rs62543350	T	C	17035.77	.	AC=1;AF=0.500;AN=2;DB;DP=766;set=Intersection	GT:AD:AF:DP	0/1:302,459:0.60:761
chr9	68433537	rs74819687	T	G	21007.77	.	AC=1;AF=0.500;AN=2;DB;DP=809;set=Intersection	GT:AD:AF:DP	0/1:264,533:0.67:797
chr9	68433556	rs76632075	G	T	3805.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.295;ClippingRankSum=0.000;DB;DP=988;ExcessHet=3.0103;FS=8.863;MLEAC=1;MLEAF=0.500;MQ=50.28;MQRankSum=4.138;QD=3.93;ReadPosRankSum=1.615;SOR=1.057;set=HC	GT:AD:AF:DP	0/1:748,221:0.23:969
chr9	68433568	rs139880713	T	C	3105.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.019;ClippingRankSum=0.000;DB;DP=1015;ExcessHet=3.0103;FS=5.186;MLEAC=1;MLEAF=0.500;MQ=50.05;MQRankSum=-7.679;QD=3.15;ReadPosRankSum=-2.609;SOR=1.132;set=HC	GT:AD:AF:DP	0/1:769,218:0.22:987
chr9	68433612	rs76007226	A	G	1464.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.703;ClippingRankSum=0.000;DB;DP=947;ExcessHet=3.0103;FS=0.879;MLEAC=1;MLEAF=0.500;MQ=49.86;MQRankSum=-14.155;QD=1.63;ReadPosRankSum=0.989;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:805,96:0.11:901
chr9	68433620	rs62543351	C	T	5071.77	.	AC=1;AF=0.500;AN=2;DB;DP=904;set=Intersection	GT:AD:AF:DP	0/1:562,294:0.34:856
chr9	68433625	rs139088975	A	G	1391.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.523;ClippingRankSum=0.000;DB;DP=873;ExcessHet=3.0103;FS=4.585;MLEAC=1;MLEAF=0.500;MQ=49.86;MQRankSum=-2.574;QD=1.69;ReadPosRankSum=1.205;SOR=1.177;set=HC	GT:AD:AF:DP	0/1:680,144:0.17:824
chr9	68433635	rs192109483	C	T	1689.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.891;ClippingRankSum=0.000;DB;DP=795;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=49.81;MQRankSum=-13.783;QD=2.27;ReadPosRankSum=7.892;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:655,89:0.12:744
chr9	68433641	rs78330154	G	T	10431.77	.	AC=1;AF=0.500;AN=2;DB;DP=750;set=Intersection	GT:AD:AF:DP	0/1:362,335:0.48:697
chr9	68433657	rs141211711	A	C	2167.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.977;ClippingRankSum=0.000;DB;DP=635;ExcessHet=3.0103;FS=2.730;MLEAC=1;MLEAF=0.500;MQ=49.82;MQRankSum=-13.663;QD=3.71;ReadPosRankSum=5.383;SOR=0.448;set=HC	GT:AD:AF:DP	0/1:495,89:0.15:584
chr9	68433673	rs150998881	A	G	1146.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.743;ClippingRankSum=0.000;DB;DP=543;ExcessHet=3.0103;FS=6.541;MLEAC=1;MLEAF=0.500;MQ=49.32;MQRankSum=0.455;QD=2.34;ReadPosRankSum=-1.827;SOR=1.378;set=HC	GT:AD:AF:DP	0/1:403,87:0.18:490
chr9	68433701	rs62543352	A	G	1170.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.630;ClippingRankSum=0.000;DB;DP=287;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=48.51;MQRankSum=6.819;QD=4.68;ReadPosRankSum=2.723;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:186,64:0.26:250
chr9	69002193	rs75969422	T	C	467.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:42,23:0.35:65
chr9	69002200	rs10908046	C	T	659.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:43,32:0.43:75
chr9	69002294	rs79965448	C	T	2006.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.607;ClippingRankSum=0.000;DB;DP=222;ExcessHet=3.0103;FS=0.556;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.25;ReadPosRankSum=-0.773;SOR=0.780;set=HC	GT:AD:AF:DP	0/1:156,61:0.28:217
chr9	69002304	rs78546776	C	A	2357.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.010;ClippingRankSum=0.000;DB;DP=254;ExcessHet=3.0103;FS=1.737;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.55;ReadPosRankSum=-0.408;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:179,68:0.28:247
chr9	69002317	rs76266132	T	C	2329.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:217,76:0.26:293
chr9	69002413	rs62555122	T	C	1699.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.168;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=0.614;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=0.000;QD=9.77;ReadPosRankSum=2.096;SOR=0.767;set=HC	GT:AD:AF:DP	0/1:122,52:0.30:174
chr9	69002423	rs62555123	G	A	1554.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.312;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=0.651;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=0.000;QD=10.03;ReadPosRankSum=1.648;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:109,46:0.30:155
chr9	69256741	rs62557778	T	C	567.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=29.88;SOR=5.994;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr9	69256816	rs62557779	G	A	1467.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr9	71538069	rs2027208	A	G	2030.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr9	71555492	rs10746973	A	G	1871.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr9	71555522	rs10746974	C	T	3171.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr9	71628207	rs3730386	G	C	7357.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:1,267:1.00:268
chr9	71650752	rs2481598	A	G	1097.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr9	71667986	rs7865353	G	A	1075.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:1,39:0.97:40
chr9	71714693	rs10121021	C	T	4007.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr9	71789156	rs13301644	C	T	1143.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr9	71789386	rs144607139	T	TCGTGAG	2680.73	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr9	71820008	rs2498440	A	G	986.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr9	71827618	rs34883177	T	C	1331.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:1,46:0.98:47
chr9	71831398	rs2498417	T	C	1810.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr9	71843023	rs2309428	C	A	4199.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr9	71849286	.	T	TTTTC	625.73	.	AC=2;AF=1.00;AN=2;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.93;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr9	71851877	rs34774441	G	A	3038.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr9	71862817	rs41308892	C	A	454.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr9	71865835	rs117794991	G	A	1393.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr9	71867861	rs41277913	A	G	2091.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr9	72046040	rs1105307	G	A	560.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr9	72055804	rs141781087	G	A	774.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr9	72064749	rs2781532	T	C	1405.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr9	72086415	rs1761287	T	C	3049.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr9	72090806	rs2781542	T	G	1912.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr9	72131577	rs34788368	A	C	5844.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr9	72338180	rs11139996	T	C	1210.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr9	72373624	rs10735564	A	G	5127.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr9	72373716	rs10780612	G	C	1910.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr9	72373752	rs10780613	A	C	879.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.33;QD=26.66;SOR=2.235;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr9	72373775	rs72268955	TAAA	T	465.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.67;QD=35.83;SOR=4.977;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr9	72374677	rs2274745	T	G	2712.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr9	72374941	rs2274744	C	A	1254.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.18;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr9	72374969	rs2252130	T	C	736.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr9	72472746	rs35585376	TA	T	2521.73	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr9	72473053	rs1133275	TG	CA	2791.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr9	72501698	rs4407955	G	T	2648.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr9	72501962	rs4548246	T	C	844.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr9	72740974	rs1927112	A	G	5851.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.67;SOR=1.230;set=HC	GT:AD:AF:DP	1/1:0,228:1.00:228
chr9	72741312	rs1998972	G	A	1513.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr9	72783608	rs10780871	T	C	3337.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr9	72785653	rs4744587	T	G	298.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr9	72882642	rs7027209	A	G	459.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr9	72893298	rs10714271	GT	G	628.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr9	72897434	rs1180116	G	A	1113.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr9	72901096	rs1180123	T	C	3749.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr9	72929503	rs10868801	T	C	334.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr9	72933958	rs7025228	G	C	1658.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr9	72965438	rs1536957	A	G	350.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr9	73002648	rs7020167	C	G	3595.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr9	73150984	rs6560142	C	T	7600.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr9	73151715	rs7033976	C	T	5780.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr9	73151970	rs3739776	C	T	5891.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:1,210:1.00:211
chr9	73164611	rs1889914	G	A	4121.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:2,132:0.99:134
chr9	73164712	rs1889915	T	C	1210.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr9	73213610	rs4744605	A	G	1896.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr9	73213644	rs4744606	A	C	999.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr9	73234066	rs7849400	G	A	1065.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr9	73240312	rs7035025	C	G	3230.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr9	73250037	rs4322073	C	T	1106.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr9	73255337	rs1538670	A	C	2127.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:1,77:0.99:78
chr9	73255432	rs1538669	G	C	5097.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr9	73408386	rs67641812	AT	A	101.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=63.93;MQRankSum=1.248;QD=9.25;ReadPosRankSum=-2.509;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:4,7:0.64:11
chr9	73408389	rs75105857	T	A	110.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.602;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=63.93;MQRankSum=1.248;QD=10.07;ReadPosRankSum=-1.111;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:4,7:0.64:11
chr9	73408518	rs10868890	T	G	4567.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr9	73442724	rs1034538	C	T	6066.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr9	74300640	rs2310021	A	G	3700.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr9	74314210	rs4263836	A	T	72.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr9	74314368	rs5898223	T	TA	124.75	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=15.59;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr9	74326961	rs3739781	A	G	2616.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr9	74331267	.	GA	G	41	.	AC=1;AF=0.500;AN=2;BRF=0.25;FR=0.5725;HP=12;HapScore=2;MGOF=15;MMLQ=27;MQ=60.0;NF=4;NR=0;PP=41;QD=12.5;SC=AATTAATCCAGAAAAAAAAAA;SbPval=1.0;Source=Platypus;TC=6;TCF=6;TCR=0;TR=4;WE=74331275;WS=74331257;set=Platypus	GT:AD:AF:DP	0/1:2,4:0.67:6
chr9	74331376	rs4745117	A	C	809.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr9	74332970	rs25692	G	A	1993.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr9	74349917	rs71353514	CAA	C	2708.73	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:15,108:0.88:123
chr9	74477617	rs10573097	TAAGA	T	1302.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr9	74526540	rs4744647	T	A	2523.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr9	74526978	rs10580392	GCA	G	277.77	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr9	74561883	rs10120169	G	A	1093.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr9	74586309	rs7866397	C	T	103.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr9	74687591	rs111947240	C	T	2579.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr9	74764627	rs3802506	C	G	3906.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr9	74834384	rs10869148	C	T	2719.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr9	74840586	rs11143178	C	A	1311.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr9	74842773	rs41287393	G	A	2234.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:2,85:0.98:87
chr9	74862221	rs11143198	C	T	1238.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr9	74862290	rs145950864	G	A	3612.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.01;SOR=0.843;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr9	74862294	rs11143199	T	C	3588.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.77;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr9	74862361	rs11143200	C	T	2008.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr9	74975136	rs2809270	T	C	1546.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr9	74975711	rs1853276	T	C	3747.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr9	74979593	rs2224603	G	C	1606.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr9	75242807	rs7047173	G	A	1040.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr9	75263674	rs1444842	T	G	1355.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr9	75303653	rs2589615	C	T	5259.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr9	75357515	rs12345051	G	A	2109.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr9	75420448	rs111880209	CT	C	1607.73	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:12,103:0.90:115
chr9	75521060	rs348472	A	G	1793.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr9	75554895	rs33988381	A	AT	252.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.222;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=6.226;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.15;ReadPosRankSum=-0.678;SOR=0.071;set=HC	GT:AD:AF:DP	0/1:11,20:0.65:31
chr9	75554982	rs348449	G	A	3209.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr9	75781246	rs10512015	T	C	1091.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr9	75782510	rs1342017	G	A	1013.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:2,38:0.95:40
chr9	75782555	rs17058570	C	G	624.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr9	75783937	rs3739959	A	G	3906.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr9	77230423	rs3904059	A	T	1753.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr9	77230477	rs3904058	A	G	2666.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr9	77245162	rs2146777	A	T	4539.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr9	77400718	rs55720633	T	C	1037.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr9	77411729	rs143164660	C	G	4736.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:2,181:0.99:183
chr9	77415284	rs7859201	A	C	7316.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr9	77415535	rs10617132	TAA	T	206.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=22.97;ReadPosRankSum=-0.524;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:1,8:0.89:9
chr9	77416972	rs11144089	C	T	9301.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:0,348:1.00:348
chr9	77436641	rs7018994	G	A	5651.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr9	77442616	rs7045949	C	T	3244.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:2,122:0.98:124
chr9	77454821	.	G	GGAGGGAGGGAGGGAGGGAGA	391.73	.	AC=2;AF=1.00;AN=2;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=63.27;QD=65.29;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr9	77478816	rs60062173	A	T	1128.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr9	77502160	rs1333342	G	A	2765.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr9	77599683	rs10869465	G	A	523.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr9	77611258	rs10869466	A	G	115.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr9	77668902	rs11144201	A	G	1090.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr9	77676285	rs11519	T	G	418.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr9	77681019	rs2376396	G	C	1622.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr9	77681039	rs4357362	C	G	2006.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr9	77681102	rs9722476	A	G	3720.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr9	77681179	rs7852863	C	T	9972.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:1,228:1.00:229
chr9	77681193	rs10869492	A	C	9741.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:1,221:1.00:222
chr9	77681818	rs2273762	T	C	3775.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr9	77681928	rs2273763	C	G	1473.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr9	77684690	rs3752955	A	C	3662.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr9	77692555	rs60305501	CT	C	238.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.109;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=5.902;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.38;ReadPosRankSum=2.234;SOR=0.069;set=HC	GT:AD:AF:DP	0/1:4,19:0.83:23
chr9	77745424	rs2295861	T	C	2552.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr9	77752675	rs2025159	A	G	1383.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr9	77761642	rs2146044	T	C	6517.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:2,256:0.99:258
chr9	78600898	rs4322070	C	G	2232.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr9	78601268	rs1538843	G	A	807.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr9	78711053	rs1416547	T	G	1335.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr9	78748962	rs141353765	ACT	A	3324.73	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr9	78773953	rs2297342	G	A	13243.77	.	AC=2;AF=1.00;AN=2;DB;DP=501;set=Intersection	GT:AD:AF:DP	1/1:0,497:1.00:497
chr9	78790148	.	GAATGA	G	1095.86	.	AC=1;AF=0.500;AN=2;DP=148;set=Intersection	GT:AD:AF:DP	0/1:2,29:0.94:31
chr9	78790187	rs10118321	G	C	1247.73	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=67.71;QD=40.25;SOR=5.353;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr9	78799566	rs1537183	C	T	1241.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr9	78803466	rs7046850	T	C	1851.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr9	78804206	rs150226536	G	GAAAAT	412.74	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr9	78808329	rs3077117	G	GAAAA	1262.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.57;QD=43.54;SOR=1.255;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr9	78809822	rs7019429	A	G	2154.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr9	78819998	rs10869732	T	C	6874.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr9	78820011	rs7851394	G	A	7545.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr9	78842380	rs1390141	A	G	3374.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:2,134:0.99:136
chr9	78848542	rs903545	C	G	1666.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr9	78917015	rs11451259	T	TA	248.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.674;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=19.13;ReadPosRankSum=0.489;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:1,12:0.92:13
chr9	78925814	rs2257775	C	A	566.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr9	78936358	rs1110222	G	A	4545.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr9	78936492	rs1110223	A	G	7998.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:4,292:0.99:296
chr9	78937877	rs34797584	A	G	1128.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr9	78937901	rs55903217	T	C	2837.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.34;SOR=2.531;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr9	78937901	.	TAC	CAT	2575	.	AC=2;AF=1.00;AN=2;BRF=0.46;FR=1.0000;HP=2;HapScore=1;MGOF=46;MMLQ=28;MQ=60.0;NF=45;NR=11;PP=2575;QD=20;SC=GGAGCTAGCCTACTGCAGACA;SbPval=0.54;Source=Platypus;TC=56;TCF=45;TCR=11;TR=56;WE=78937911;WS=78937891;set=Platypus	GT:AD:AF:DP	1/1:0,56:1.00:56
chr9	78937903	rs55805812	C	T	2837.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.34;SOR=2.531;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr9	78937929	rs56332566	AC	A	3184.73	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:2,105:0.98:107
chr9	78937974	rs3001772	C	T	6182.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:2,231:0.99:233
chr9	78938043	rs2495207	G	A	8948.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:0,341:1.00:341
chr9	78938186	rs2803429	G	C	2752.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:2,96:0.98:98
chr9	78938236	rs55762660	G	A	2489.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.383;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=3.337;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=38.90;ReadPosRankSum=0.272;SOR=2.157;set=HC	GT:AD:AF:DP	1/1:2,62:0.97:64
chr9	78938246	rs2803430	T	C	2366.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=3.834;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=42.26;ReadPosRankSum=1.614;SOR=2.480;set=HC	GT:AD:AF:DP	1/1:2,54:0.96:56
chr9	78938256	rs2259775	C	G	2115.81	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.766;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=4.184;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=40.69;ReadPosRankSum=2.166;SOR=2.701;set=HC	GT:AD:AF:DP	1/1:2,50:0.96:52
chr9	78942956	rs2259969	A	G	5947.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr9	78965993	rs2257220	G	A	452.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr9	79003324	rs2501926	G	A	521.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr9	79003440	rs2501924	G	A	381.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr9	79009106	rs2490582	A	C	4477.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr9	79118661	rs1057419	A	G	1065.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr9	79240050	rs700809	T	C	1434.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr9	79243767	rs10632629	C	CT	43.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.655;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=7.782;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.86;ReadPosRankSum=0.272;SOR=3.611;set=HC	GT:AD:AF:DP	0/1:4,5:0.56:9
chr9	79244208	.	T	TA	115.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.561;ClippingRankSum=0.000;DP=103;ExcessHet=3.0103;FS=1.192;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.61;ReadPosRankSum=-0.214;SOR=1.042;set=HC	GT:AD:AF:DP	0/1:55,17:0.24:72
chr9	79253347	rs3739518	T	C	961.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr9	79888396	rs2050831	A	G	70.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr9	79972503	rs72746088	T	C	580.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr9	80049298	rs1801258	C	T	2859.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr9	80336467	rs185734369	A	C	1893.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr9	80343587	rs5898555	G	GA	255.14	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.872;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=1.808;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=0.883;QD=8.80;ReadPosRankSum=-0.653;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:8,21:0.72:29
chr9	80430802	rs2289121	C	A	509.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr9	80912115	rs2277148	G	C	5381.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr9	80915392	rs3824360	G	A	733.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr9	80915403	rs10121107	A	T	843.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr9	80917070	rs3739472	C	T	325.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr9	80917096	rs3739473	C	T	251.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr9	80919756	rs3739474	T	G	2116.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr9	80921446	rs944513	G	T	2141.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr9	80932574	rs3780194	T	A	1530.73	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr9	82187750	rs1934610	A	G	11834.77	.	AC=2;AF=1.00;AN=2;DB;DP=453;set=Intersection	GT:AD:AF:DP	1/1:2,450:1.00:452
chr9	82189914	rs2791566	T	C	3064.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.54;SOR=0.833;set=HC	GT:AD:AF:DP	1/1:0,120:1.00:120
chr9	82308390	rs11138336	G	A	1261.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:1,48:0.98:49
chr9	82308670	rs7025437	A	G	1134.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr9	82320887	rs4877147	A	T	4005.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr9	82333094	.	C	CT	49.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.012;ClippingRankSum=0.000;DP=91;ExcessHet=3.0103;FS=13.504;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.69;ReadPosRankSum=-0.063;SOR=0.078;set=HC	GT:AD:AF:DP	0/1:58,14:0.19:72
chr9	82335292	.	GGTGTGT	G	143.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.623;ClippingRankSum=-0.000;DP=38;ExcessHet=3.0103;FS=17.404;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.98;ReadPosRankSum=1.349;SOR=3.011;set=HC	GT:AD:AF:DP	0/1:3,9:0.75:12
chr9	84202837	.	G	GTGTGTCATCCCGCC	1631.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;ClippingRankSum=0.000;DP=209;ExcessHet=3.0103;FS=0.978;MLEAC=1;MLEAF=0.500;MQ=60.98;MQRankSum=1.309;QD=14.97;ReadPosRankSum=1.168;SOR=0.548;set=HC	GT:AD:AF:DP	0/1:51,58:0.53:109
chr9	84202839	.	G	GTGTCATCCCGCC	189.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.748;ClippingRankSum=0.000;DP=206;ExcessHet=3.0103;FS=2.888;MLEAC=1;MLEAF=0.500;MQ=60.99;MQRankSum=-0.949;QD=1.69;ReadPosRankSum=1.628;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:95,17:0.15:112
chr9	84207898	rs7023704	C	G	4305.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:2,166:0.99:168
chr9	84230804	rs72747252	G	A	267.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr9	84235798	rs11139343	G	A	5071.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr9	84248203	rs113273526	CGTGTGTGTGTGT	C,CGT	1081.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=36;set=Intersection	GT:AF:DP	1/2:0.33,0.67:27
chr9	84267021	.	T	TACACACAC,TACACACACACAC	900.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=16;set=Intersection	GT:AF:DP	1/2:0.31,0.69:13
chr9	84267147	rs2228173	T	C	3452.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr9	84275014	rs2627002	C	A	1601.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr9	84275095	rs2796450	C	T	4323.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr9	84275256	rs36108203	C	CA,CAA	1041.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.405;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=1.234;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=14.67;ReadPosRankSum=2.265;SOR=0.495;set=HC	GT:AD:AF:DP	1/2:12,38,21:0.54,0.30:71
chr9	85597720	.	CAG	C	241.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.526;ClippingRankSum=0.000;DP=178;ExcessHet=3.0103;FS=1.207;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.16;ReadPosRankSum=-0.609;SOR=1.015;set=HC	GT:AD:AF:DP	0/1:91,21:0.19:112
chr9	85677254	rs10573978	AG	A	139.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.578;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=25.559;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.50;ReadPosRankSum=-1.079;SOR=0.005;set=HC	GT:AD:AF:DP	0/1:77,16:0.17:93
chr9	85863091	rs10114696	A	G	4563.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:1,170:0.99:171
chr9	85905666	rs942283	A	G	1841.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr9	85905737	rs942282	C	G	857.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr9	85905786	rs942281	G	A	364.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr9	85913590	rs11140011	A	G	2279.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr9	85914243	rs1359168	A	C	1845.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr9	85964450	rs4877253	A	G	1443.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:1,50:0.98:51
chr9	86004993	rs7853850	C	T	2765.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr9	86238086	rs2811903	T	C	925.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr9	86241489	rs2780977	A	G	435.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr9	86243933	rs2811905	G	T	2448.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr9	86256381	rs66822704	CATGAT	C	11236.73	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr9	86256431	rs2811917	T	A	6559.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:1,247:1.00:248
chr9	86278773	rs9314722	T	C	2835.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:1,109:0.99:110
chr9	86279015	rs2781003	C	T	2071.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.16;SOR=1.562;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr9	86279025	rs2781002	T	C	1991.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.27;SOR=1.508;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr9	86281195	rs12344615	A	G	2189.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr9	86284178	rs1044175	C	A	5261.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:2,198:0.99:200
chr9	86292938	rs11393859	C	CTT	239.76	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.75;MQRankSum=-0.309;QD=14.10;ReadPosRankSum=-1.072;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:3,14:0.82:17
chr9	86327898	rs10119344	C	T	13761.77	.	AC=2;AF=1.00;AN=2;DB;DP=515;set=Intersection	GT:AD:AF:DP	1/1:0,515:1.00:515
chr9	86354511	rs4750	G	C	366.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:14,17:0.55:31
chr9	86354810	rs2287373	T	C	436.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:6,15:0.71:21
chr9	86368105	rs10868053	A	G	631.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:30,24:0.44:54
chr9	86399815	rs7021357	C	T	901.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:60,46:0.43:106
chr9	86457387	rs71365387	G	GT	489.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.256;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=4.253;MLEAC=1;MLEAF=0.500;MQ=58.42;MQRankSum=-1.963;QD=9.99;ReadPosRankSum=0.750;SOR=0.204;set=HC	GT:AD:AF:DP	0/1:21,28:0.57:49
chr9	86468715	rs295274	A	T	4302.77	.	AC=1;AF=0.500;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	0/1:212,202:0.49:414
chr9	86485622	.	CT	C	173.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.339;ClippingRankSum=0.000;DP=157;ExcessHet=3.0103;FS=2.664;MLEAC=1;MLEAF=0.500;MQ=59.76;MQRankSum=0.000;QD=2.29;ReadPosRankSum=-0.840;SOR=1.287;set=HC	GT:AD:AF:DP	0/1:47,29:0.38:76
chr9	86504005	rs13289566	C	T	2770.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:170,134:0.44:304
chr9	86523673	rs11364843	CT	C	54.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.623;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=6.106;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=1.733;QD=1.30;ReadPosRankSum=1.338;SOR=1.905;set=HC	GT:AD:AF:DP	0/1:31,11:0.26:42
chr9	86592026	rs296886	A	G	1784.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.144;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.31;ReadPosRankSum=-0.475;SOR=0.640;set=HC	GT:AD:AF:DP	0/1:62,83:0.57:145
chr9	86617265	rs1982151	A	G	1572.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:56,66:0.54:122
chr9	86894087	rs35110452	C	CA	109.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.352;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=1.421;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.98;ReadPosRankSum=1.065;SOR=1.074;set=HC	GT:AD:AF:DP	0/1:85,27:0.24:112
chr9	86895089	.	C	CT	362.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.486;ClippingRankSum=0.000;DP=147;ExcessHet=3.0103;FS=8.050;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.000;QD=3.30;ReadPosRankSum=-0.581;SOR=0.230;set=HC	GT:AD:AF:DP	0/1:75,35:0.32:110
chr9	86914709	rs200253055	AT	A	100.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.667;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.17;ReadPosRankSum=-1.297;SOR=0.798;set=HC	GT:AD:AF:DP	0/1:63,23:0.27:86
chr9	86920117	rs36082472	GA	G	181.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.292;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=9.600;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.93;ReadPosRankSum=-1.501;SOR=0.124;set=HC	GT:AD:AF:DP	0/1:62,32:0.34:94
chr9	87285915	rs1187326	C	T	2956.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr9	87285992	rs1211166	G	A	697.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr9	87360106	rs144586764	ACACCT	A	2932.73	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr9	87475806	.	GTTTA	G	48	.	AC=1;AF=0.500;AN=2;BRF=0.44;FR=0.5000;HP=6;HapScore=1;MGOF=5;MMLQ=22;MQ=60.0;NF=0;NR=2;PP=48;QD=26.5;SC=CAAGTGGTTTGTTTATTTATT;SbPval=0.26;Source=Platypus;TC=16;TCF=8;TCR=8;TR=2;WE=87475817;WS=87475796;set=Platypus	GT:AD:AF:DP	0/1:14,2:0.12:16
chr9	87563252	rs1078947	T	C	2144.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr9	87563562	rs2289656	G	A	2981.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr9	87636058	rs114230675	G	A	1759.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr9	88292506	.	T	TA	78.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.654;ClippingRankSum=0.000;DP=176;ExcessHet=3.0103;FS=1.935;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=2.902;QD=0.54;ReadPosRankSum=0.241;SOR=0.480;set=HC	GT:AD:AF:DP	0/1:118,28:0.19:146
chr9	88618462	rs1328923	C	G	407.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.49;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr9	88650586	rs375193474	TA	T	57.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.183;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=1.643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.92;ReadPosRankSum=1.615;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:17,13:0.43:30
chr9	88667582	rs10780743	T	G	3217.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.38;SOR=0.831;set=HC	GT:AD:AF:DP	1/1:0,122:1.00:122
chr9	88924057	rs4520250	A	C	1515.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr9	88924985	rs5898925	C	CT	567.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.948;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=0.642;QD=12.62;ReadPosRankSum=1.042;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:9,36:0.80:45
chr9	88925534	rs5898926	ATG	A	1438.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr9	88932226	rs41316484	A	G	3203.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr9	89561421	.	A	AAGC	2797.73	.	AC=2;AF=1.00;AN=2;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr9	89763851	rs458983	C	G	3202.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr9	90062823	rs12682834	A	G	3355.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr9	90258262	rs10630837	C	CT	384.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.184;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=1.723;QD=4.87;ReadPosRankSum=-0.184;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:39,40:0.51:79
chr9	90296193	rs72033969	C	CAAAAAAAA	1705.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.27;QD=42.64;SOR=2.753;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr9	90313717	rs3128495	G	T	2929.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr9	90316635	.	ATTT	A,AT	2126.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.984;ClippingRankSum=0.000;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.20;MQRankSum=0.248;QD=21.06;ReadPosRankSum=0.069;SOR=0.713;set=HC	GT:AD:AF:DP	1/2:14,31,56:0.31,0.55:101
chr9	90316710	rs3118858	T	C	7742.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr9	90320954	rs1927973	G	A	1772.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr9	90321583	rs3118863	C	T	6651.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr9	90322023	rs1056719	G	A	15330.77	.	AC=2;AF=1.00;AN=2;DB;DP=585;set=Intersection	GT:AD:AF:DP	1/1:1,574:1.00:575
chr9	90534156	rs202161190	T	TTCTTGTCTCCCAGCGTCA	7999.73	.	AC=2;AF=1.00;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	1/1:1,170:0.99:171
chr9	90537856	rs79747501	A	G	45.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.52;QD=22.87;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr9	90537892	rs147621256	G	C	172.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.05;QD=28.81;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr9	90559129	rs7027067	G	A	193.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.69;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr9	90586043	rs622418	G	A	5717.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr9	90588814	rs570184	C	G	6747.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr9	90588903	rs665983	C	T	6492.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr9	90589016	rs666459	A	G	2015.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr9	90589502	rs576555	G	C	1328.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr9	90744936	rs200880066	T	C	42.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.359;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=17.024;MLEAC=1;MLEAF=0.500;MQ=48.87;MQRankSum=-2.434;QD=0.79;ReadPosRankSum=-0.554;SOR=0.020;set=HC	GT:AD:AF:DP	0/1:45,9:0.17:54
chr9	90745671	rs145820594	T	C	1314.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr9	90748837	rs10868714	T	C	413.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr9	91083260	rs376917926	CT	C	632.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.483;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=3.711;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.268;QD=3.38;ReadPosRankSum=-2.818;SOR=0.388;set=HC	GT:AD:AF:DP	0/1:103,84:0.45:187
chr9	91262215	rs7048023	T	C	2107.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:2,78:0.97:80
chr9	91262296	rs4543636	G	A	4115.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr9	91262343	rs5899049	A	ATGG	5729.73	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr9	91262387	rs28550932	G	A	3370.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr9	91262522	rs28429833	T	A	3649.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:1,137:0.99:138
chr9	91262597	rs7862585	A	G	1554.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr9	91262618	rs28455807	T	C	1003.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr9	91606203	rs4877039	C	G	1128.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr9	91628546	rs944483	A	C	4810.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.03;SOR=0.969;set=HC	GT:AD:AF:DP	1/1:0,178:1.00:178
chr9	91653257	rs11352525	TA	T	375.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.501;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.05;ReadPosRankSum=-0.036;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:5,29:0.85:34
chr9	91661746	rs7022911	C	G	906.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.91;SOR=1.148;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr9	91666812	rs7021743	C	A	1155.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr9	91667136	rs7025214	C	T	990.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr9	91680531	rs3818668	C	G	1854.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr9	91680570	rs146079934	A	G	1312.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr9	91680600	rs9410455	A	G	768.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr9	91934787	rs3763616	A	G	999.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr9	92003679	rs11526468	C	T	5211.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr9	92017733	rs41287361	G	A	1239.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr9	92020433	rs7856677	G	A	2919.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr9	92220558	rs62559577	T	A	10627.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr9	92220561	.	GTC	G,GCTC	10950.73	.	AC=2,0;AF=1.00,0.00;ALERT;AN=2;DP=236;set=Intersection	GT:AF:DP	1/1:1.00:235
chr9	92220563	.	CC	AG	2947	.	AC=2;AF=1.00;AN=2;FR=1.0000;HP=3;HapScore=1;MGOF=8;MMLQ=24;MQ=60.0;NF=84;NR=69;PP=2947;QD=20;SC=TGACCTAGGTCCCCGCCTTGC;SbPval=0.58;Source=Platypus;TC=189;TCF=103;TCR=86;TR=153;WE=92220572;WS=92220548;set=Platypus	GT:AD:AF:DP	1/1:36,153:0.81:189
chr9	92220564	.	C	CTAG	10915.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=236;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.65;SOR=1.164;set=HC	GT:AD:AF:DP	1/1:0,234:1.00:234
chr9	92785610	rs586750	G	C	686.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr9	93639803	rs1760132	A	G	3502.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr9	93657761	rs158689	A	T	2432.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:2,94:0.98:96
chr9	94495608	rs10820900	T	C	6915.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:2,257:0.99:259
chr9	94499618	rs7855522	G	A	3902.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr9	94518328	rs12683181	C	T	4730.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr9	94538115	rs7863557	C	G	2573.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr9	95219597	rs4744132	G	A	3091.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr9	95237024	rs3078372	CTCATCA	CTCA,C	3107.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=139;set=Intersection	GT:AF:DP	1/1:0.98:87
chr9	95256519	rs331380	C	T	5040.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr9	95284982	rs10120210	T	G	5993.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr9	95362665	rs1874128	G	A	3187.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr9	95373884	rs1552908	A	G	317.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr9	95378353	rs2274413	G	A	5035.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr9	95380726	rs2148537	G	A	10410.77	.	AC=2;AF=1.00;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	1/1:0,384:1.00:384
chr9	95381024	rs3839884	CT	C	448.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr9	95397418	rs1111047	C	G	2815.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr9	95400261	rs2277169	C	T	1864.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr9	95400642	rs41266683	C	T	1347.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.51;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr9	95402950	rs3216731	AG	A	7195.73	.	AC=2;AF=1.00;AN=2;DB;DP=185;MQ=60.18;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr9	95414726	rs7853617	G	A	379.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.79;QD=23.74;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr9	95414828	rs7857502	C	T	1377.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:2,53:0.96:55
chr9	95432029	rs754600	G	A	1055.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr9	95481975	rs56339669	C	G	12922.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	1/1:2,330:0.99:332
chr9	95481994	rs12238691	C	T	10819.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr9	95526667	rs2277164	G	C	1896.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr9	95527083	.	A	AGCC	1500.73	.	AC=2;AF=1.00;AN=2;DP=73;set=Intersection	GT:AD:AF:DP	1/1:3,45:0.94:48
chr9	95527095	rs191031181	T	C	1482.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.493;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.46;MQRankSum=0.446;QD=32.95;ReadPosRankSum=-1.595;SOR=1.426;set=HC	GT:AD:AF:DP	1/1:3,42:0.93:45
chr9	95580726	rs143411689	TTTTG	T	6221.73	.	AC=2;AF=1.00;AN=2;DB;DP=188;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.52;QD=44.13;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,141:1.00:141
chr9	95580745	rs71364316	GT	G	1439.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.356;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.37;MQRankSum=-2.148;QD=12.85;ReadPosRankSum=-2.129;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:18,94:0.84:112
chr9	95618605	rs76420217	TA	T	1115.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.589;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.59;MQRankSum=1.055;QD=12.97;ReadPosRankSum=-0.265;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:14,72:0.84:86
chr9	95640006	rs138836175	A	C	3500.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr9	95738781	rs3802381	C	A	6843.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr9	95780465	rs7048975	A	G	6946.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr9	95784620	rs41273410	C	A	9398.77	.	AC=2;AF=1.00;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	1/1:4,356:0.99:360
chr9	95872744	rs3819011	C	T	2738.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr9	95874070	rs2027585	G	C	1849.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr9	95874428	rs10821071	G	A	898.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr9	95875556	rs2298242	G	A	561.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr9	95875575	rs2298243	G	A	347.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr9	95887320	rs2275848	G	T	8339.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr9	95992213	rs7871272	A	G	2592.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr9	96000622	rs1539670	C	T	1522.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr9	96015256	rs4744201	C	T	11132.77	.	AC=2;AF=1.00;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	1/1:0,414:1.00:414
chr9	96015377	rs4744202	A	G	2059.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr9	96015398	rs4744203	A	T	1068.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:1,45:0.98:46
chr9	96019118	rs10122466	A	G	1020.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr9	96021312	rs10761203	G	A	33035.77	.	AC=2;AF=1.00;AN=2;DB;DP=1291;set=Intersection	GT:AD:AF:DP	1/1:4,1278:1.00:1282
chr9	96024794	rs7854000	T	C	837.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr9	96024859	rs1936403	A	G	2899.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr9	96025717	rs10649709	C	CAG	2302.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr9	96025771	rs6479467	G	A	3004.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr9	96026122	rs147436035	T	TG	1408.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr9	96030230	rs7856268	T	C	5664.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:2,213:0.99:215
chr9	96031262	rs1936401	T	C	2546.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr9	96051521	rs2169756	A	G	5606.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr9	96052179	rs2306183	G	A	1160.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:2,45:0.96:47
chr9	96097747	rs78436873	C	T	6559.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr9	96209943	rs10821128	T	C	3787.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr9	96213291	rs10992740	A	G	5609.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr9	96213543	.	C	A	1338.77	.	AC=2;AF=1.00;AN=2;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr9	96214928	rs1055710	G	A	3656.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:1,136:0.99:137
chr9	96238578	rs10821135	C	T	4973.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr9	96238731	rs10821136	C	T	721.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr9	96289269	rs10739950	C	T	932.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr9	96292025	rs10761232	A	T	623.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr9	96392182	rs10992812	G	A	4022.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr9	96398508	rs2398851	A	G	810.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr9	96407822	rs6479500	A	G	1436.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr9	96407848	rs7851271	A	G	2247.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr9	96415653	rs3750354	C	T	1926.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr9	96420390	rs3763605	A	G	2394.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;MQ=59.94;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr9	96422420	rs10992836	T	C	5943.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr9	96425138	rs3750358	T	C	744.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr9	96425363	rs3750359	G	A	3021.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr9	96425777	rs7036592	C	T	524.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr9	96426049	rs112327078	T	TCACA	638.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr9	96428457	rs10992840	A	G	593.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr9	96439004	rs149736720	C	CCCTGCCTCCACCACA	4010.73	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr9	96581893	rs4743934	A	G	377.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr9	97054889	.	T	TTTGTGTGTGTG	405.74	.	AC=2;AF=1.00;AN=2;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=67.13;QD=40.57;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr9	97080944	rs150455117	GAGA	G	2145.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.03;QD=43.79;SOR=1.007;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr9	97081795	rs150662309	A	G	249.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr9	97090722	rs7019931	A	C	814.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr9	97329737	rs10657369	C	CAG	5600.73	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr9	97329822	rs2987883	A	G	1401.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr9	97349666	rs573212	C	G	2386.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr9	97365720	rs1769257	T	C	4906.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr9	97369149	rs1769259	C	T	5941.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.67;SOR=1.222;set=HC	GT:AD:AF:DP	1/1:0,133:1.00:133
chr9	97369149	.	CTG	TTA	2947	.	AC=2;AF=1.00;AN=2;BRF=0.48;FR=1.0000;HP=2;HapScore=1;MGOF=12;MMLQ=24;MQ=60.0;NF=49;NR=27;PP=2947;QD=20;SC=GTCAAAGTCCCTGGCGTAGCC;SbPval=0.56;Source=Platypus;TC=83;TCF=53;TCR=30;TR=76;WE=97369159;WS=97369139;set=Platypus	GT:AD:AF:DP	1/1:7,76:0.92:83
chr9	97369151	rs1042144	G	A	3560.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.067;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.77;ReadPosRankSum=-1.098;SOR=1.232;set=HC	GT:AD:AF:DP	1/1:2,131:0.98:133
chr9	97380043	rs8192689	G	A	8976.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:0,334:1.00:334
chr9	97426330	.	TA	T	179.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.550;ClippingRankSum=0.000;DP=121;ExcessHet=3.0103;FS=2.096;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.55;ReadPosRankSum=0.393;SOR=1.081;set=HC	GT:AD:AF:DP	0/1:81,35:0.30:116
chr9	97427531	rs4743965	C	A	5900.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:2,218:0.99:220
chr9	97766714	rs187801305	G	A	1493.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr9	97768286	rs10761364	T	C	1202.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr9	97822941	rs1888944	T	C	7276.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr9	97849090	rs4657	A	G	1997.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr9	97873435	rs2404457	G	A	849.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr9	97873957	rs4647534	A	G	5227.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr9	97885616	rs881791	T	C	631.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr9	97933252	rs3737142	T	C	589.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr9	98209594	rs357564	G	A	4038.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:1,147:0.99:148
chr9	98239190	rs574688	G	C	5963.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr9	98669620	.	G	GA	113.87	.	AC=2;AF=1.00;AN=2;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr9	98997910	rs8190570	ATCTTTGTGG	A	5525.73	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr9	99003264	rs2066485	C	T	3788.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:2,137:0.99:139
chr9	99013663	rs408876	A	G	1794.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr9	99084181	rs2026002	G	A	4636.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr9	99086282	rs72621424	C	A	1556.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.84;SOR=1.382;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr9	99086550	rs7038558	C	T	920.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr9	100041610	rs2255135	C	G	212.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr9	100041876	rs2255139	A	G	1011.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr9	100112977	rs117886450	G	T	364.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr9	100190780	rs1381532	A	G	1237.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr9	100193113	rs7874295	T	C	3825.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr9	100194406	rs2045732	T	C	7790.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:2,289:0.99:291
chr9	100201503	.	C	CT	72.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.960;ClippingRankSum=0.000;DP=107;ExcessHet=3.0103;FS=3.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.69;ReadPosRankSum=-0.116;SOR=0.324;set=HC	GT:AD:AF:DP	0/1:86,19:0.18:105
chr9	100227423	rs4743099	G	A	832.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr9	100232788	rs116973630	A	G	392.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr9	100286431	rs41274244	C	A	4757.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:3,184:0.98:187
chr9	100366953	rs2805779	A	G	4504.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr9	100374032	rs147070204	T	C	6958.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr9	100388197	rs2773347	C	T	3757.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr9	100428977	rs10116536	A	G	435.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr9	100433233	rs2805837	G	A	1510.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:1,54:0.98:55
chr9	100459578	rs1800975	T	C	5244.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr9	100616066	rs1867280	G	C	132.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.14;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr9	100616583	rs3021523	T	C	10015.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	1/1:0,384:1.00:384
chr9	100616700	rs71369530	AGCCGCC	A	733.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr9	100617021	rs3021526	C	T	1627.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr9	100617375	rs7046645	T	C	2313.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr9	100675816	rs1127703	A	G	2613.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:2,103:0.98:105
chr9	100684645	rs3824496	C	T	4847.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr9	100684719	rs3183928	A	C	4566.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr9	100684757	rs3183927	A	G	3670.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr9	100692237	rs79474766	T	TA	798.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:1,23:0.96:24
chr9	100700242	rs199724877	C	CT	254.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.259;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.37;ReadPosRankSum=-1.490;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:18,22:0.55:40
chr9	100823084	rs13049	T	C	2836.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr9	100843417	rs4237190	A	G	2727.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr9	100854920	rs4743163	C	A	2307.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr9	100890591	rs11794723	A	G	5514.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:4,215:0.98:219
chr9	100895443	rs735111	C	T	8349.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr9	100900111	rs34374919	TC	T	1317.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr9	100963653	rs3739668	T	C	1670.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr9	100965472	rs3739667	C	T	3734.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr9	100970881	rs10985441	A	G	382.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr9	100971348	rs3739666	T	C	6306.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr9	100973178	rs3832623	A	AGAGGCCT	3014.73	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr9	100983566	rs7855855	C	G	2840.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:2,102:0.98:104
chr9	100991430	rs1573025	C	A	1672.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr9	100995721	rs879369	A	G	5309.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr9	100995758	rs879368	G	T	7860.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr9	101006210	rs10818666	T	C	1128.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.41;SOR=1.697;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr9	101006216	rs10818667	A	G	1128.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.15;SOR=1.893;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr9	101006436	rs10818668	C	A	5511.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.06;SOR=0.895;set=HC	GT:AD:AF:DP	1/1:0,128:1.00:128
chr9	101006443	rs10818669	T	C	5489.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.27;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,124:1.00:124
chr9	101014315	rs140182714	G	GA	334.06	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:3,19:0.86:22
chr9	101053076	rs5010004	C	G	1489.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr9	101056009	rs10818743	T	G	2579.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr9	101056122	rs10985765	T	C	9824.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:0,365:1.00:365
chr9	101061639	rs970388	C	G	991.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr9	101243021	rs2779547	T	C	731.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr9	101243364	rs2808557	T	G	3015.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr9	101304348	rs2184026	C	T	3941.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr9	101533220	rs6415847	C	T	3179.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.64;SOR=0.865;set=HC	GT:AD:AF:DP	1/1:0,124:1.00:124
chr9	101539601	rs4742741	G	A	2009.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr9	101544627	rs7020056	A	G	1478.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr9	101552955	rs7027771	T	C	4189.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr9	101553014	rs7038640	G	T	1422.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr9	101570336	rs1137654	A	T	2128.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.34;SOR=0.843;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr9	101585444	rs2295922	G	C	1563.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr9	101602476	rs3824516	G	T	320.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr9	101867537	rs11466445	TGGCGGCGGC	T	278.76	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr9	101891428	rs192247094	T	G	3036.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr9	102068344	rs790287	C	G	715.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr9	102068770	rs7871150	T	C	1326.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr9	102068832	rs170462	G	A	2404.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr9	102068912	rs182704	C	T	1639.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr9	102589219	rs3832634	G	GT	3357.73	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:2,135:0.99:137
chr9	102591042	rs12344570	A	G	1821.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr9	102595685	rs10988904	C	T	7584.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr9	102625834	rs7032301	T	C	2822.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr9	102677589	rs41305451	T	C	1909.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:2,77:0.97:79
chr9	102713580	rs1997368	G	A	8676.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:1,321:1.00:322
chr9	102713591	rs3739794	T	C	8160.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr9	102778480	rs10819718	T	C	546.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr9	102780721	rs4743375	T	C	459.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr9	102814585	rs202031558	T	TA	568.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.849;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.00;MQRankSum=0.000;QD=13.23;ReadPosRankSum=0.555;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:8,35:0.81:43
chr9	102860928	rs6479001	G	A	5275.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr9	102988234	rs56840267	G	A	275.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr9	102988328	rs61147858	CTT	C	2194.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr9	103027226	.	C	CT	353.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.115;ClippingRankSum=0.000;DP=194;ExcessHet=3.0103;FS=1.788;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.60;ReadPosRankSum=-0.393;SOR=0.456;set=HC	GT:AD:AF:DP	0/1:96,40:0.29:136
chr9	103046916	rs11790431	G	A	886.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:1,29:0.97:30
chr9	103054951	rs2787374	T	C	4243.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr9	103059176	rs41274951	C	G	4445.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr9	103059476	rs7864494	A	G	1839.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr9	103060386	rs3813712	T	G	4013.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr9	103065884	rs3923501	C	T	4146.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr9	103090328	rs143830136	TTAAA	T	1435.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr9	103108641	rs10989063	T	C	3419.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr9	103108941	rs2151131	C	G	5440.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr9	103111418	rs41274961	C	T	707.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr9	103114793	rs1930244	G	C	7639.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:1,276:1.00:277
chr9	103114876	rs11791943	G	A	2118.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:1,70:0.99:71
chr9	104124664	rs2229594	C	T	773.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr9	104130338	rs73657933	C	T	2151.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr9	104130469	rs41281027	C	G	3473.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.57;SOR=1.099;set=HC	GT:AD:AF:DP	1/1:0,126:1.00:126
chr9	104153155	rs10989486	G	C	1987.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr9	104161450	rs61755098	G	A	9556.77	.	AC=2;AF=1.00;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	1/1:1,384:1.00:385
chr9	104184022	rs4577	G	A	2303.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:2,90:0.98:92
chr9	104187400	rs506571	A	G	1132.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr9	104302625	rs16920477	A	G	9732.77	.	AC=2;AF=1.00;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	1/1:2,366:0.99:368
chr9	104313898	.	C	CATTATTGATATATATTTTTCTCCTTTTAGATTCTTATAGATCAAATTTAGGAGACAGAATA	769.73	.	AC=2;AF=1.00;AN=2;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=256.58;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr9	104324545	rs10521057	G	A	4534.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr9	104341796	rs17774987	T	C	646.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr9	104375538	rs17189821	T	C	1094.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr9	104385711	rs10989563	CA	TG	5655.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr9	104385800	rs10989565	G	A	442.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr9	104385813	rs10989566	A	G	284.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr9	104390789	rs10819955	C	G	924.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr9	104432293	rs1323434	C	T	1428.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr9	104432873	rs942142	T	G	12987.77	.	AC=2;AF=1.00;AN=2;DB;DP=484;set=Intersection	GT:AD:AF:DP	1/1:1,476:1.00:477
chr9	104433034	rs10512285	A	G	6537.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr9	104433235	rs10989589	C	T	4906.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr9	104433436	rs1885980	T	A	1280.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr9	104449063	rs2506354	C	T	4020.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr9	104449098	rs10989591	C	T	3874.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:1,146:0.99:147
chr9	104499575	rs1337677	T	C	10636.77	.	AC=2;AF=1.00;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	1/1:0,397:1.00:397
chr9	107298444	rs41305445	C	T	9997.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:6,357:0.98:363
chr9	107299001	rs41304943	C	A	1753.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr9	107332377	rs76017116	T	A	2146.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr9	107456892	rs13294411	C	G	3110.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:2,116:0.98:118
chr9	107457275	rs10820709	A	C	2773.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:2,100:0.98:102
chr9	107457532	rs10761073	C	T	9246.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:1,346:1.00:347
chr9	107457759	rs1364946	C	T	1144.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr9	107510178	rs147856422	AGGGGC	A	3317.73	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr9	107515214	rs2274870	G	A	2988.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr9	107531361	rs2472478	T	C	1757.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr9	107548493	rs2740485	G	T	1497.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr9	107553185	rs2020927	A	G	3319.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr9	107553478	rs4149331	A	T	373.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr9	107554069	rs2066720	C	T	1630.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr9	107555711	rs4149327	C	G	1007.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr9	107556793	rs3029409	TA	T	409.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.338;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=0.772;QD=6.94;ReadPosRankSum=-0.702;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:18,41:0.69:59
chr9	107566877	rs2777801	C	A	3647.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr9	107602711	.	G	A	4757.77	.	AC=2;AF=1.00;AN=2;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr9	107624123	rs34203904	CA	C	49.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.248;ClippingRankSum=-0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.93;ReadPosRankSum=-0.896;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:9,8:0.47:17
chr9	108060515	rs2036876	G	A	1351.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr9	108120818	rs7024985	C	T	387.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.85;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr9	108226619	rs41277771	T	C	1515.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr9	108275777	rs10739910	T	C	135.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr9	108275968	rs75201658	T	G	1495.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr9	108296915	rs7037104	A	G	3622.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:1,134:0.99:135
chr9	108296931	rs7037218	C	T	3072.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:1,112:0.99:113
chr9	110045992	.	G	GGGGGCA	3520.73	.	AC=2;AF=1.00;AN=2;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.12;QD=44.57;SOR=0.824;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr9	110047132	rs10733562	G	C	3201.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr9	110081288	rs72738215	T	C	397.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr9	110084261	rs1805330	C	T	3016.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:2,113:0.98:115
chr9	110086149	rs1805334	G	A	2359.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr9	110093970	.	C	CA,CAA	3339.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.649;ClippingRankSum=0.000;DP=227;ExcessHet=3.0103;FS=0.761;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.05;MQRankSum=0.416;QD=15.32;ReadPosRankSum=-0.566;SOR=0.566;set=HC	GT:AD:AF:DP	1/2:30,143,45:0.66,0.21:218
chr9	111616818	rs3750466	T	C	373.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr9	111625913	rs4978370	A	G	7638.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr9	111631647	rs3763644	C	T	998.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr9	111637304	rs2027433	G	T	3699.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr9	111637331	rs1981268	CC	AG	4754.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr9	111637935	rs12002774	G	A	952.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr9	111644396	rs2275495	G	A	5121.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr9	111651497	rs3780508	T	C	3291.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.36;SOR=1.852;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr9	111651497	.	TAT	CAC	1068	.	AC=2;AF=1.00;AN=2;BRF=0.41;FR=1.0000;HP=1;HapScore=1;MGOF=4;MMLQ=24;MQ=60.0;NF=37;NR=13;PP=1068;QD=22.4293574972;SC=GGGCAAACACTATCTCTGGAC;SbPval=0.48;Source=Platypus;TC=52;TCF=39;TCR=13;TR=50;WE=111651507;WS=111651487;set=Platypus	GT:AD:AF:DP	1/1:2,50:0.96:52
chr9	111651499	rs3780509	T	C	3291.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.31;SOR=1.704;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr9	111653460	rs3737309	A	G	2922.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr9	111658963	rs10816764	T	G	6476.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:3,246:0.99:249
chr9	111659021	rs2275626	T	C	3181.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:1,111:0.99:112
chr9	111659483	rs2230793	T	G	4781.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:2,171:0.99:173
chr9	111660851	rs2230792	C	T	747.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr9	111661150	rs4978760	G	A	345.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr9	111662288	rs55969525	A	C	609.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr9	111662726	rs1341216	CG	TA	9021.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr9	111665728	rs16913675	G	C	1579.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr9	111668652	rs838827	C	T	4847.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr9	111679747	rs35676797	CA	C	109.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.428;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=5.719;MLEAC=1;MLEAF=0.500;MQ=60.39;MQRankSum=1.771;QD=2.19;ReadPosRankSum=-0.756;SOR=0.141;set=HC	GT:AD:AF:DP	0/1:33,17:0.34:50
chr9	111868777	rs2583377	C	T	3882.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr9	111870700	rs35388228	T	TA	474.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.973;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=1.150;QD=5.52;ReadPosRankSum=-1.974;SOR=0.870;set=HC	GT:AD:AF:DP	0/1:42,44:0.51:86
chr9	111911775	rs1533641	G	A	1438.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr9	111929420	rs10979723	C	G	62.74	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.37;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr9	111929421	rs10979724	G	C	62.74	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.37;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr9	111936732	rs10733569	G	A	2115.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr9	111936788	rs10979727	C	T	3365.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr9	111945166	rs10122682	A	G	3517.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr9	111947704	rs12377767	C	T	1328.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr9	111956494	rs10979741	C	T	2323.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr9	111956599	rs3750447	G	A	2244.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr9	111962418	rs7864511	G	C	1584.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr9	112020713	rs893917	A	G	1841.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr9	112025473	rs1982226	C	A	325.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr9	112042298	rs10979794	A	G	641.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr9	112082760	.	G	GCGCTGC	742.73	.	AC=2;AF=1.00;AN=2;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.49;QD=46.42;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr9	112151349	rs1371787	C	T	755.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr9	112170701	rs35463120	T	TAAAC	3398.73	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr9	112172477	rs2275699	T	G	2989.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr9	112172674	rs17803052	C	T	2339.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr9	112184972	rs111591001	C	CA	433.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.337;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=0.725;QD=10.84;ReadPosRankSum=-1.295;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:10,30:0.75:40
chr9	112199408	rs10979864	A	G	540.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr9	112219474	rs3793524	C	G	7928.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:1,292:1.00:293
chr9	112225531	rs62576448	G	A	1180.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr9	112225552	.	T	TA	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.446;ClippingRankSum=0.000;DP=56;ExcessHet=3.0103;FS=2.430;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.65;ReadPosRankSum=-0.382;SOR=1.711;set=HC	GT:AD:AF:DP	0/1:42,10:0.19:52
chr9	112225774	rs2274786	T	C	4121.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr9	112225832	rs3808877	C	G	2155.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr9	112629397	rs7044189	G	A	2256.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr9	112629444	.	CTG	C	257.73	.	AC=1;AF=0.500;ALERT;AN=2;DP=42;set=Intersection	GT:AD:AF:DP	0/1:8,13:0.62:21
chr9	112629446	rs13295100	G	C	121.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:13,8:0.38:21
chr9	112629448	rs201251679	G	C	266.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:8,13:0.62:21
chr9	112629858	rs2769154	A	G	1838.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr9	112852530	rs10759388	C	T	423.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr9	112898327	rs1475612	A	G	1080.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr9	112963504	rs10120707	A	G	9820.77	.	AC=2;AF=1.00;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	1/1:0,359:1.00:359
chr9	113006420	rs5843	A	G	3788.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr9	113007289	rs4135220	T	G	3525.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr9	113007319	rs4135219	TGAA	T	2634.73	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr9	113013588	rs4135192	A	G	291.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr9	113091653	rs10980325	A	C	222.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr9	113128844	.	GA	G	294.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.223;ClippingRankSum=0.000;DP=96;ExcessHet=3.0103;FS=1.058;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.291;QD=4.33;ReadPosRankSum=0.455;SOR=0.466;set=HC	GT:AD:AF:DP	0/1:38,30:0.44:68
chr9	113137562	rs138259328	TTCTGAG	T	8851.73	.	AC=2;AF=1.00;AN=2;DB;DP=209;MQ=60.05;set=Intersection	GT:AD:AF:DP	1/1:2,201:0.99:203
chr9	113139489	rs2274485	C	G	1152.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr9	113139783	rs2077800	G	A	968.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr9	113141815	rs992883	A	G	5281.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:3,200:0.99:203
chr9	113166697	rs1410049	T	A	5259.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr9	113169630	rs7046213	T	C	8672.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,327:1.00:327
chr9	113171262	rs16914997	G	A	1601.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr9	113192387	rs11331398	CT	C	235.87	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.028;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=2.831;MLEAC=2;MLEAF=1.000;MQ=60.28;MQRankSum=0.500;QD=11.79;ReadPosRankSum=-1.450;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:2,18:0.90:20
chr9	113199041	rs10980386	T	C	1387.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr9	113206141	rs4304395	C	A	2395.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr9	113207962	rs7847560	A	C	1472.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr9	113209195	rs1889323	T	G	2242.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr9	113212205	rs2095294	G	A	1386.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr9	113212454	rs10817021	A	T	7294.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr9	113213726	rs4421419	A	G	9007.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:0,329:1.00:329
chr9	113213740	rs10817022	T	C	8283.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr9	113218098	rs112071235	T	TAAAGA	1491.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr9	113219727	rs10980397	C	T	1172.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr9	113228096	rs10980400	T	C	3552.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr9	113233956	rs7860284	C	T	565.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr9	113234507	rs10817025	T	C	5049.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr9	113234618	rs34710785	CAG	C	5289.73	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr9	113245758	rs10817030	C	T	1228.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr9	113261483	rs872665	C	T	3946.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr9	113275444	rs371135144	CT	C	54.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.131;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=1.680;QD=1.37;ReadPosRankSum=0.971;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:29,11:0.28:40
chr9	113308284	rs2991363	A	T	3297.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr9	113449271	rs7869057	G	C	594.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr9	113490776	rs10817087	C	T	447.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr9	113524511	rs147974075	AT	A	4237.73	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr9	113547001	rs572189	A	C	2107.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:1,69:0.99:70
chr9	113547322	rs484010	T	C	2129.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr9	113548111	.	CAT	C	49	.	AC=1;AF=0.500;AN=2;BRF=0.18;FR=0.5000;HP=2;HapScore=2;MGOF=6;MMLQ=23;MQ=60.0;NF=0;NR=3;PP=49;QD=19.3333333333;SC=TATACACACACATATATATAT;SbPval=1.0;Source=Platypus;TC=13;TCF=0;TCR=13;TR=3;WE=113548120;WS=113548101;set=Platypus	GT:AD:AF:DP	0/1:10,3:0.23:13
chr9	113550168	rs2766999	T	C	8065.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr9	113734610	rs2277179	T	C	1124.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr9	114090279	rs314452	A	G	7377.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr9	114125835	rs2297524	A	G	1664.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr9	114134198	rs10980884	C	A	742.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr9	114136169	rs7029123	A	G	1560.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr9	114146686	rs12350482	C	T	3797.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr9	114148496	rs4978994	A	G	500.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr9	114155899	rs2598360	G	A	422.10	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:2,18:0.90:20
chr9	114170785	rs79202070	TA	T	462.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.453;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.13;ReadPosRankSum=1.071;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:61,51:0.46:112
chr9	114174415	rs2418163	T	C	6600.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.447;ClippingRankSum=0.000;DB;DP=264;ExcessHet=3.0103;FS=3.044;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.39;ReadPosRankSum=-1.423;SOR=0.260;set=HC	GT:AD:AF:DP	1/1:1,259:1.00:260
chr9	114176383	.	TA	T	59.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.736;ClippingRankSum=-0.000;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.60;MQRankSum=0.674;QD=4.27;ReadPosRankSum=-0.124;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:7,7:0.50:14
chr9	114178402	rs12338500	T	G	480.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr9	114193095	rs12348365	A	T	417.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr9	114202502	rs7860748	G	A	671.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr9	114301585	rs10441737	C	T	892.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr9	114326557	rs199591989	TTTA	T	65.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.367;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.13;ReadPosRankSum=0.427;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:17,4:0.19:21
chr9	114340993	rs13290557	C	G	199.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr9	114341239	.	G	GA	250.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.881;ClippingRankSum=0.000;DP=248;ExcessHet=3.0103;FS=4.197;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=2.921;QD=1.19;ReadPosRankSum=1.908;SOR=0.933;set=HC	GT:AD:AF:DP	0/1:167,44:0.21:211
chr9	114341376	rs17320055	C	T	2064.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr9	114348513	rs2273786	G	A	1397.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr9	114356659	rs3739703	C	T	1532.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr9	114359624	rs1053959	C	A	1407.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr9	114409550	rs4978455	A	G	2638.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr9	114411945	rs7019332	G	T	1879.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr9	114424119	rs199499183	C	CG	413.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.58;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr9	114449219	rs372363777	C	CTT	753.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.560;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.40;MQRankSum=0.616;QD=21.54;ReadPosRankSum=-1.085;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:1,34:0.97:35
chr9	114454544	rs7869279	T	C	1817.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr9	114454580	rs1475110	A	G	1776.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr9	114456322	rs113054343	T	TTAAG	1081.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr9	114462322	rs6477845	A	G	1364.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr9	114464487	rs1407390	T	C	1899.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr9	114467446	.	T	TACACACAC	547.73	.	AC=2;AF=1.00;AN=2;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=78.25;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr9	114467448	rs4993590	T	C	556.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.40;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr9	114467450	rs28406980	T	C	510.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.56;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr9	114467478	rs28545063	T	C	300.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr9	114467703	rs60124253	C	CT	245.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.882;ClippingRankSum=-0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.45;MQRankSum=-0.000;QD=11.17;ReadPosRankSum=0.141;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:5,17:0.77:22
chr9	114469078	rs10125413	T	G	1614.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr9	114475262	rs6477846	T	A	1097.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr9	114480602	rs2418174	C	A	1631.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr9	114484682	rs1337581	T	C	1674.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr9	114489887	rs953536	C	T	1480.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr9	114490308	rs7470491	T	C	1609.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr9	114537978	rs440164	A	T	709.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.89;SOR=5.421;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr9	114543400	rs2786632	A	G	1269.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr9	114659661	rs3780519	A	T	1939.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.57;SOR=1.032;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr9	114687164	rs80084467	G	A	733.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.30;SOR=1.071;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr9	114804173	rs3849117	G	A	2537.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr9	114811154	rs1980739	C	T	3500.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr9	114864734	rs4979082	C	G	1416.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr9	114919707	rs700105	A	G	5633.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr9	114937659	rs7024998	C	G	119.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr9	114982463	rs7855745	T	C	6890.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:3,258:0.99:261
chr9	114982549	rs7869523	C	T	6706.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr9	114986021	rs34621641	C	CAGAA	1475.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.12;SOR=4.047;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr9	114990841	rs111362962	T	TTATACTATA	576.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr9	114990872	rs7026917	C	T	219.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.47;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr9	114993508	rs943620	C	T	539.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr9	114993790	rs943621	G	A	366.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr9	114994271	rs2004269	G	A	691.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=53.21;SOR=5.283;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr9	114994276	.	G	A	736.77	.	AC=2;AF=1.00;AN=2;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.34;SOR=4.294;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr9	114994280	rs372088093	AG	A	727.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.81;SOR=4.294;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr9	114994285	rs370879653	AG	A	997.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.51;SOR=3.816;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr9	114994290	rs370701025	AG	A	1042.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.45;SOR=4.091;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr9	114994295	rs374007410	AG	A	1132.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.31;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr9	114994300	.	A	AAAG	1357.73	.	AC=2;AF=1.00;AN=2;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=48.49;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr9	114994305	rs6151125	A	AAAG	1433.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.80;SOR=4.680;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr9	114997288	rs2274519	C	T	1042.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr9	115014799	rs10659246	G	GAA	434.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.67;QD=28.98;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr9	115024695	rs10981334	G	A	2022.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr9	115024971	rs3843823	G	A	542.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr9	115030570	rs7870866	C	T	1185.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr9	115030590	rs4500150	T	A	939.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr9	115038100	rs4979093	T	C	1735.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr9	115051546	rs11792085	A	G	2884.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr9	115052104	rs10121087	A	G	264.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr9	115052167	rs7047691	T	C	110.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr9	115060100	rs34861385	A	AC	1167.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr9	115060682	rs3808881	G	A	603.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr9	115092577	rs2418204	G	A	73.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.43;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr9	115092624	rs2900539	T	A	383.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr9	115095743	rs7040447	T	C	7047.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr9	115142330	rs35979933	CG	C	1195.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr9	115142507	rs7867831	A	G	2209.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr9	115216222	rs10538330	GATTA	G	4062.73	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr9	115249262	rs6477940	T	C	1601.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr9	115249433	rs7031191	T	C	4207.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr9	115450093	rs786970	C	T	688.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr9	115567015	rs139599865	A	ATG	1193.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr9	115567184	rs1891402	T	C	2340.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr9	115580008	rs10117709	G	C	2403.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr9	115598447	rs6477961	C	T	1102.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr9	115600848	rs7023478	T	C	2150.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr9	115652836	rs3802492	G	A	3393.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr9	115760561	rs10981590	C	T	4402.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:2,167:0.99:169
chr9	115920099	rs4344146	T	C	2274.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr9	115925104	rs3810906	C	T	2383.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr9	115928275	rs3810908	T	C	1322.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr9	115931692	rs3810909	A	G	5256.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:4,197:0.98:201
chr9	115934022	rs5900041	A	AACCTGGATT	1651.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr9	115936903	rs3827673	A	G	2024.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr9	115968609	rs4281172	C	T	395.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr9	115968951	rs3935547	T	C	1048.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr9	115968992	rs35902681	A	AT	39	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=9.75;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr9	115969433	rs5900043	T	TAGA	3648.73	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr9	115985607	.	TAA	T	80.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.758;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;FS=3.675;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.37;ReadPosRankSum=-0.548;SOR=1.034;set=HC	GT:AD:AF:DP	0/1:26,8:0.24:34
chr9	116022860	rs376538466	TAC	T	30.73	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:17,5:0.23:22
chr9	116041173	rs145708649	TTC	T	1855.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr9	116050720	.	C	CT	107.27	.	AC=2;AF=1.00;AN=2;DP=12;set=Intersection	GT:AD:AF:DP	1/1:2,8:0.80:10
chr9	116091342	rs3810921	T	C	4861.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:1,192:0.99:193
chr9	116093126	rs66790147	C	A	2315.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr9	116116483	rs10981762	A	G	779.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr9	116116626	rs10981763	C	G	2722.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:1,108:0.99:109
chr9	116124454	rs10600721	GGT	G	129.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.959;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=1.938;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.32;ReadPosRankSum=-0.740;SOR=1.151;set=HC	GT:AD:AF:DP	0/1:20,10:0.33:30
chr9	116259441	rs76955252	T	C	2415.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr9	116346287	rs3810927	C	T	4058.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:1,145:0.99:146
chr9	116356373	rs12350531	G	C	12238.77	.	AC=2;AF=1.00;AN=2;DB;DP=446;MQ=60.02;set=Intersection	GT:AD:AF:DP	1/1:0,444:1.00:444
chr9	116356516	rs12341266	A	G	6513.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr9	116356529	rs10817493	C	G	6391.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr9	116357408	rs884992	C	T	1372.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr9	116359339	rs1051013	T	C	1505.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr9	116638556	.	AGCG	A	193.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.569;ClippingRankSum=0.000;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.18;ReadPosRankSum=0.395;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:20,7:0.26:27
chr9	116764832	rs148995274	TTTTGCAC	T	13417.73	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:4,306:0.99:310
chr9	116769515	rs4979321	C	T	4724.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:1,170:0.99:171
chr9	116778269	rs4979324	A	G	691.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr9	116791161	rs7030167	T	C	10518.77	.	AC=2;AF=1.00;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	1/1:2,398:0.99:400
chr9	116822610	rs2269456	A	G	4084.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.68;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,98:1.00:98
chr9	116822620	rs2269455	G	A	2206.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.952;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.66;ReadPosRankSum=1.103;SOR=0.791;set=HC	GT:AD:AF:DP	1/1:2,84:0.98:86
chr9	116822650	rs2269454	T	C	1567.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr9	116840204	rs2251680	A	G	2646.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr9	116840338	rs2285056	C	T	13097.77	.	AC=2;AF=1.00;AN=2;DB;DP=507;set=Intersection	GT:AD:AF:DP	1/1:0,503:1.00:503
chr9	116856889	rs1465660	A	G	873.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr9	116857656	rs7036734	T	C	3803.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr9	116858625	rs6478062	T	G	7969.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr9	116945454	rs10759688	A	C	249.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr9	116958144	rs10982097	C	T	2444.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:1,88:0.99:89
chr9	116958216	rs2567711	C	T	5727.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr9	116967263	rs2567719	T	G	2746.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:1,105:0.99:106
chr9	116967952	rs2567720	T	C	2855.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr9	116980052	rs10982110	C	T	3297.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr9	116997994	rs2015408	T	C	5442.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr9	117002373	.	C	T	5593.77	.	AC=2;AF=1.00;AN=2;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr9	117002517	rs2014134	C	T	10142.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	1/1:0,375:1.00:375
chr9	117037820	rs10513241	A	G	1678.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr9	117038097	rs201395474	ACT	A	2057.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;MQ=60.21;set=Intersection	GT:AD:AF:DP	1/1:1,49:0.98:50
chr9	117044538	rs2636879	G	T	5077.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:3,180:0.98:183
chr9	117044654	rs62555441	G	A	14699.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;ClippingRankSum=0.000;DB;DP=634;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.63;ReadPosRankSum=0.010;SOR=0.817;set=HC	GT:AD:AF:DP	1/1:6,616:0.99:622
chr9	117044751	rs2787330	T	C	8657.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr9	117050998	rs10982134	G	A	5538.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:2,207:0.99:209
chr9	117051586	rs72762675	C	G	2843.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr9	117052738	rs11386651	G	GT	874.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr9	117052772	rs7018988	C	A	333.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr9	117053215	rs1249738	A	G	5889.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:2,217:0.99:219
chr9	117053273	rs1249737	T	G	4341.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:2,158:0.99:160
chr9	117054542	rs7855288	C	T	242.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr9	117064306	rs1546049	T	C	4033.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr9	117064345	rs1546048	G	A	4184.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr9	117085526	rs147960186	G	A	2683.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr9	117085635	rs74594458	T	C	4719.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr9	117086226	rs1111796	A	G	8578.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:2,321:0.99:323
chr9	117093729	rs10759691	A	G	1035.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr9	117094073	rs113974644	T	C	2039.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr9	117103973	rs2250242	A	G	972.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr9	117106190	rs3748179	C	T	2552.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr9	117110046	rs3748178	C	T	906.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr9	117150070	rs1324632	G	A	3324.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr9	117165363	rs41278663	G	A	1418.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:2,52:0.96:54
chr9	117166311	rs34963246	G	A	8644.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:4,328:0.99:332
chr9	117166338	rs6478078	G	C	7710.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr9	117186677	rs4979387	A	G	1857.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:1,72:0.99:73
chr9	117188566	rs10817610	C	T	1830.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr9	117266337	rs35122928	TA	T	833.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.388;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=0.732;QD=12.08;ReadPosRankSum=1.104;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:10,59:0.86:69
chr9	117266965	rs2297815	C	T	3356.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr9	117390300	rs7031094	C	A	998.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr9	117428960	rs1055207	T	C	1182.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr9	117430524	rs2296947	G	A	2152.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr9	117430611	rs1359992	A	T	3780.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr9	117430743	rs2418316	A	T	793.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.35;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr9	117433685	rs2296948	C	T	2663.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr9	117433811	rs3215861	C	CA	4099.73	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr9	117552885	rs3810936	T	C	5058.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr9	117553249	rs4246905	T	C	1844.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr9	117554504	.	TACACAC	T,TAC	694.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.98;QD=38.60;SOR=2.833;set=HC	GT:AD:AF:DP	1/2:0,6,12:0.33,0.67:18
chr9	117568049	rs7030574	C	A	799.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr9	117656633	rs3833492	C	CCTG	1807.73	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr9	117666678	rs3181367	G	A	757.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:1,27:0.96:28
chr9	117668142	rs3181195	C	T	2465.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr9	117692257	rs146785310	T	TAGAG	225.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.53;QD=37.63;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr9	117786508	rs10982498	G	A	951.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr9	117797359	rs3215885	A	AT	204.73	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:5,14:0.74:19
chr9	117803185	rs35141770	A	AAC,AACAC	2506.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=66;set=Intersection	GT:AF:DP	1/2:0.16,0.83:64
chr9	117804544	rs1061495	T	C	4983.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr9	117808721	rs61734387	C	T	2806.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr9	117808785	rs2104772	T	A	2711.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr9	117836188	rs2210108	A	G	1409.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr9	117840061	rs2988577	A	G	186.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.14;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr9	117846450	rs1755639	A	G	1392.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr9	117848201	rs3827815	T	C	8669.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:1,317:1.00:318
chr9	117848394	rs1757095	T	C	10940.77	.	AC=2;AF=1.00;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	1/1:0,406:1.00:406
chr9	118163563	rs2269700	C	T	2853.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr9	118164375	rs370103137	CT	C	36.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.678;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=3.156;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.50;ReadPosRankSum=-0.259;SOR=1.296;set=HC	GT:AD:AF:DP	0/1:56,18:0.24:74
chr9	118969686	rs11268296	T	TTATTTAAATAG	726.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr9	119106881	rs7020782	C	A	6181.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr9	119158814	rs8456	T	C	5388.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr9	119160758	rs146823201	T	TA	345.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.707;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=5.027;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.52;ReadPosRankSum=1.105;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:17,29:0.63:46
chr9	119160791	rs3810939	T	C	2969.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.19;QD=26.75;SOR=1.652;set=HC	GT:AD:AF:DP	1/1:0,111:1.00:111
chr9	119188495	rs4836708	T	G	443.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr9	119204638	rs2302827	G	A	5024.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr9	119382768	rs2295741	A	G	5913.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr9	119462112	rs3019	C	T	562.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr9	119495697	rs7863560	T	C	1771.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr9	119582872	rs3765537	T	G	916.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr9	119770551	rs7036098	G	A	4004.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr9	119903506	rs10817999	C	T	2807.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr9	119903807	rs57782747	A	C	1583.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr9	119977077	rs4543613	T	C	1608.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr9	120053776	rs7848630	T	C	2567.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr9	120466929	rs5900307	CA	C	924.73	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:6,58:0.91:64
chr9	120471058	rs2770148	G	A	4451.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr9	122275247	rs10984573	A	T	1385.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr9	123223026	.	CT	C	46.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.508;ClippingRankSum=0.000;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=2.000;QD=0.39;ReadPosRankSum=-0.971;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:100,21:0.17:121
chr9	123280950	rs2095064	T	C	2038.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr9	123291036	rs4836822	C	G	1428.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr9	123313246	rs954214	T	C	1375.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr9	123330813	rs4837782	T	C	2216.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr9	123330837	rs56308811	C	T	1782.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr9	123342259	rs932975	C	A	3986.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:1,147:0.99:148
chr9	123342275	rs932974	A	G	3345.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr9	123370345	rs991121	C	G	1455.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr9	123374639	rs2416760	T	C	3196.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr9	123476542	rs369989873	ACGGCGG	A	8235.73	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr9	123550027	rs7026635	G	A	5797.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr9	123583192	rs1060817	A	G	2033.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr9	123586737	rs10760117	T	G	10032.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:0,355:1.00:355
chr9	123631642	rs3753029	G	C	6949.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr9	123632045	rs1056567	A	G	3349.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr9	123632829	rs4836833	G	C	5928.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr9	123636121	rs10985070	C	A	664.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr9	123670505	rs7866003	A	T	104.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr9	123671520	rs2239657	G	A	1179.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr9	123676396	rs2416804	G	C	1772.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr9	123676482	rs2416805	T	C	2185.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr9	123676699	rs758959	C	T	223.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr9	123751800	rs3764912	A	G	812.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr9	123758425	rs10760134	T	C	829.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:1,31:0.97:32
chr9	123760086	rs34704763	AT	A	199.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr9	123762321	rs10733649	G	A	364.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr9	123769200	rs17611	C	T	1545.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr9	123780005	rs25681	G	A	7056.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr9	123787697	rs140753263	T	TACACAC,TACACACAC	1043.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=26;set=Intersection	GT:AF:DP	1/2:0.26,0.74:23
chr9	123789634	rs2416811	C	T	104.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr9	123800094	rs10818499	T	A	399.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.99;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr9	123850770	rs10818503	G	A	8247.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr9	123857085	rs10760146	C	T	41.94	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;ClippingRankSum=-0.000;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.98;ReadPosRankSum=-0.000;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:1,2:0.67:3
chr9	123858644	.	A	G	512.77	.	AC=2;AF=1.00;AN=2;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr9	123860689	rs10818504	C	T	4922.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr9	123888242	rs10760150	G	T	2331.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr9	123903083	rs10985164	C	T	1566.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:1,61:0.98:62
chr9	123908345	rs7023214	G	A	1006.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr9	123917020	rs3736855	T	A	1084.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr9	123917355	rs10818512	A	G	1106.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr9	123922729	rs35562325	A	ATGT	309.75	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr9	123923411	rs139754979	A	AGT	2603.73	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:5,77:0.94:82
chr9	123924667	rs10586591	CAT	C	1439.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr9	123927477	rs4836841	T	A	2830.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr9	123928486	rs2273988	T	C	2338.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr9	123928569	rs1535655	G	A	1648.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr9	123929710	rs10818513	A	G	2646.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr9	123937601	rs3789310	T	C	1832.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:2,64:0.97:66
chr9	123939336	rs3838267	T	TA	322.74	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr9	123943884	rs2296078	C	T	1906.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr9	123945505	rs3215744	C	CA	1490.73	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:2,67:0.97:69
chr9	123955756	rs10818516	G	A	1490.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.85;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr9	123955765	rs6478504	A	C	1490.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.85;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr9	124043867	rs10985200	C	T	8088.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr9	124073176	rs306785	T	C	901.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr9	124088768	rs306769	T	C	1538.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr9	124089173	rs216784	C	T	1085.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr9	124091135	rs306771	G	A	1597.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr9	124218133	rs3747845	C	T	1008.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr9	124222267	rs2289068	A	G	2101.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr9	124223702	rs1023731	C	A	133.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr9	124229981	rs10818542	A	G	498.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr9	124241314	rs871671	A	G	675.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr9	124241369	rs871670	T	G	2223.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr9	124241603	rs871672	G	C	1224.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr9	124519214	rs55835505	A	G	860.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr9	124519499	rs76107944	T	C	1923.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr9	124543885	rs3831352	A	AG	2623.73	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr9	124622502	rs4381015	C	A	618.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr9	124632735	rs4384052	C	T	2392.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:1,83:0.99:84
chr9	124633096	rs4370602	G	A	3501.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr9	124854880	rs10818624	C	T	328.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr9	124855211	rs61742319	C	T	2294.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr9	124855330	rs201653732	G	GTGGCCT	4135.73	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr9	124906456	rs6822	C	T	338.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr9	124906723	rs3818638	T	C	960.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr9	124910687	rs3793615	T	C	1066.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr9	124972042	rs989798	C	T	2269.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr9	124976152	rs2274748	G	C	4951.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr9	124976475	rs62574050	C	G	1147.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr9	124990773	.	C	CCG	1912.73	.	AC=2;AF=1.00;AN=2;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr9	125084641	.	CAA	C	114.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.082;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=1.595;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.55;ReadPosRankSum=0.585;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:35,10:0.22:45
chr9	125133479	rs1236913	T	C	7346.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr9	125140206	rs3842788	G	A	10054.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	1/1:4,378:0.99:382
chr9	125140696	rs2282169	G	C	7224.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:2,268:0.99:270
chr9	125144145	rs1238420	A	G	716.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr9	125145743	rs3842798	T	C	4302.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr9	125239253	rs1962091	T	C	1258.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr9	125239544	rs75911175	A	G	3690.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr9	125239796	rs73567906	G	C	4433.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:2,161:0.99:163
chr9	125240017	rs73558876	A	G	2403.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr9	125240206	rs138102077	G	GTT	2480.73	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr9	125240286	rs73558879	A	G	668.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr9	125240318	rs73558882	G	C	529.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr9	125315376	rs11412445	C	CT	1573.73	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.23;SOR=2.722;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr9	125315393	rs12684786	G	A	2458.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:1,95:0.99:96
chr9	125315557	rs1831370	T	C	7549.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:2,273:0.99:275
chr9	125315778	rs1411271	G	C	11178.77	.	AC=2;AF=1.00;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	1/1:1,406:1.00:407
chr9	125316033	rs1341042	T	C	10064.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.34;SOR=1.093;set=HC	GT:AD:AF:DP	1/1:0,222:1.00:222
chr9	125316042	rs1341043	T	C	10464.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr9	125316179	rs1341044	T	G	6422.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr9	125316350	rs1411272	C	T	7194.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr9	125317424	rs10733658	G	T	2242.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr9	125317485	rs10760239	G	T	2811.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr9	125317661	rs1041355	A	G	439.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr9	125330125	rs10739614	C	G	5565.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr9	125330678	rs10985704	T	G	2537.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr9	125330739	rs1999182	G	A	1847.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr9	125330859	rs1999183	G	A	494.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr9	125377087	rs972925	A	G	7835.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:2,305:0.99:307
chr9	125377505	rs1329957	A	G	6171.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr9	125378014	rs7470572	T	G	3874.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr9	125390874	rs1556189	A	C	1534.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr9	125391026	rs1476858	A	C	4260.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr9	125391369	rs1536929	A	G	4097.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr9	125391409	rs1536928	A	G	4666.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr9	125391677	rs12347681	T	C	2679.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr9	125391770	rs11421222	C	CA	1788.73	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr9	125391917	rs1329951	A	G	243.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr9	125391940	rs7037571	C	G	122.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr9	125438390	.	GGT	G	215	.	AC=1;AF=0.500;AN=2;BRF=0.3;FR=0.5000;HP=2;HapScore=3;MGOF=9;MMLQ=26;MQ=60.0;NF=0;NR=8;PP=215;QD=27.25;SC=CTGATTACAAGGTGTGTGTGT;SbPval=1.0;Source=Platypus;TC=17;TCF=2;TCR=15;TR=8;WE=125438401;WS=125438380;set=Platypus	GT:AD:AF:DP	0/1:9,8:0.47:17
chr9	125486968	rs2215530	G	A	7262.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr9	125487011	.	T	C	191.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.784;ClippingRankSum=0.000;DP=177;ExcessHet=3.0103;FS=13.576;MLEAC=1;MLEAF=0.500;MQ=58.66;MQRankSum=-12.041;QD=1.08;ReadPosRankSum=-5.739;SOR=2.339;set=HC	GT:AD:AF:DP	0/1:158,19:0.11:177
chr9	125487015	.	G	A	153.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.682;ClippingRankSum=0.000;DP=174;ExcessHet=3.0103;FS=17.697;MLEAC=1;MLEAF=0.500;MQ=58.78;MQRankSum=-13.138;QD=0.88;ReadPosRankSum=-4.489;SOR=3.120;set=HC	GT:AD:AF:DP	0/1:161,13:0.07:174
chr9	125512151	.	A	T	10762.77	.	AC=2;AF=1.00;AN=2;DP=400;set=Intersection	GT:AD:AF:DP	1/1:0,385:1.00:385
chr9	125512193	rs10760252	C	A	10996.77	.	AC=2;AF=1.00;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	1/1:2,405:1.00:407
chr9	125512575	rs4838012	G	A	13662.77	.	AC=2;AF=1.00;AN=2;DB;DP=508;set=Intersection	GT:AD:AF:DP	1/1:0,507:1.00:507
chr9	125512770	rs10985760	T	C	1477.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr9	125512788	rs10818740	G	A	3397.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.12;QD=47.19;SOR=0.869;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr9	125512795	rs10818741	G	C	3682.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.68;QD=41.38;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,89:1.00:89
chr9	125512826	rs28670025	G	A	3575.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr9	125617395	rs5900548	TA	T	195.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.952;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=2.384;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.97;ReadPosRankSum=0.017;SOR=0.403;set=HC	GT:AD:AF:DP	0/1:39,27:0.41:66
chr9	125620105	rs5900549	C	CA	781.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr9	125637471	rs2596699	A	T	3039.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr9	125637648	rs2596698	T	C	2496.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr9	125659520	rs2793005	T	C	1931.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr9	125673051	rs1147321	T	G	2384.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr9	125747038	rs614274	G	T	2513.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:3,107:0.97:110
chr9	125759861	rs138316961	TTTTC	T	2116.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.63;QD=43.20;SOR=2.078;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr9	125760863	rs587364	T	C	3501.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr9	125761051	rs605546	G	A	1688.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr9	125777927	rs673977	T	C	1890.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr9	125797918	rs61634863	CGTGTGTGTGTGT	C,CGT	553.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=45;set=Intersection	GT:AF:DP	1/2:0.36,0.64:14
chr9	125832879	rs803733	T	C	1004.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr9	125861695	rs700080	T	C	293.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr9	125861888	rs700081	A	G	964.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr9	125920376	rs803736	G	A	3947.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr9	125920807	rs142605162	GA	G	660.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.725;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.24;MQRankSum=0.343;QD=18.88;ReadPosRankSum=-1.139;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:1,34:0.97:35
chr9	125922854	rs11437080	C	CA	778.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:1,34:0.97:35
chr9	125932152	rs147443012	C	CAT	1679.73	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:27,67:0.71:94
chr9	126118517	rs72433015	AGCAGAGC	A	3719.73	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr9	126125318	rs2808415	C	A	6400.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr9	126131110	rs2488603	T	C	553.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr9	126133547	rs2488602	T	C	6075.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr9	126135715	rs2488601	A	G	2321.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:3,90:0.97:93
chr9	126136139	rs73571431	C	T	6655.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr9	126143662	rs3739837	G	A	3134.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr9	126144746	rs2491348	T	C	4124.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr9	126144758	rs2808409	T	C	4061.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr9	126145002	rs4836919	G	T	315.96	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:1,12:0.92:13
chr9	126145907	rs2797946	C	A	2424.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr9	126146184	.	G	A	5293.77	.	AC=2;AF=1.00;AN=2;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr9	126146197	rs2808411	C	G	4660.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr9	126217128	.	C	CTT	290.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.825;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=1.740;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=0.000;QD=7.65;ReadPosRankSum=-0.193;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:15,23:0.61:38
chr9	126220283	rs71390436	C	CT	60.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.067;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=5.379;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.04;ReadPosRankSum=1.310;SOR=0.093;set=HC	GT:AD:AF:DP	0/1:13,7:0.35:20
chr9	126439100	rs12377595	T	G	3253.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr9	126770250	rs10818907	C	G	5209.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr9	126783433	rs1042486	G	C	12851.77	.	AC=2;AF=1.00;AN=2;DB;DP=470;MQ=60.02;set=Intersection	GT:AD:AF:DP	1/1:0,464:1.00:464
chr9	126794648	rs28649641	G	A	2739.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:1,91:0.99:92
chr9	127075021	rs2274780	T	C	1214.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr9	127083725	rs10760352	C	T	7005.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:2,260:0.99:262
chr9	127089775	rs748741	A	G	3934.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:2,145:0.99:147
chr9	127101924	rs10760354	C	T	9828.77	.	AC=2;AF=1.00;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	1/1:2,362:0.99:364
chr9	127116102	rs10818946	T	G	503.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr9	127177161	rs4574	A	G	2647.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr9	127228596	rs4838184	A	G	2389.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:2,98:0.98:100
chr9	127245412	rs7037254	C	T	2192.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr9	127572710	rs7020260	C	G	4685.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr9	127618776	rs2274970	A	G	3544.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr9	127618839	rs10760381	C	G	5229.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr9	127619553	rs10819000	C	G	715.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr9	127619625	rs35041146	G	GC	2073.73	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr9	127619922	rs944952	T	C	4733.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr9	127620480	rs10593927	CAT	C	894.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr9	127637215	rs581558	T	G	638.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr9	127644882	rs596231	G	A	10434.77	.	AC=2;AF=1.00;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	1/1:0,396:1.00:396
chr9	127661521	rs750884	T	C	2507.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.32;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr9	127661526	rs750883	A	C	2590.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.47;SOR=1.392;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr9	127674200	rs583134	A	C	6311.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr9	127733926	rs2289631	C	T	3539.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr9	127757310	rs6478690	C	T	3607.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr9	127781526	rs368440246	A	G	842.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr9	127818298	rs11792367	C	T	3964.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:1,147:0.99:148
chr9	127904740	rs974826	G	C	982.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr9	127934350	rs2416954	A	C	1003.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:1,33:0.97:34
chr9	127951072	.	C	CAATAATAATAATAATAAT	308.75	.	AC=2;AF=1.00;AN=2;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.11;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr9	127951863	rs466994	G	A	4122.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr9	127962916	rs501963	G	A	4682.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr9	127962972	rs10986636	G	A	9518.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:2,353:0.99:355
chr9	127965400	rs59356323	A	C	4274.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:1,166:0.99:167
chr9	127969785	rs420423	G	A	2155.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr9	127969830	rs55736103	C	T	3302.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr9	127975583	rs359588	T	C	1353.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr9	127975654	rs1128362	C	T	3138.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr9	128064242	.	CT	C	215.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.222;ClippingRankSum=0.000;DP=58;ExcessHet=3.0103;FS=3.634;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.78;ReadPosRankSum=0.359;SOR=0.184;set=HC	GT:AD:AF:DP	0/1:29,28:0.49:57
chr9	128069547	rs11458332	C	CA	72.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.292;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=4.356;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.51;ReadPosRankSum=-0.529;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:19,10:0.34:29
chr9	128074807	rs432757	T	C	3823.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr9	128201098	rs7864593	A	G	1297.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr9	128327891	rs545320	A	C	2968.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr9	128711809	rs13298715	A	G	723.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:4,31:0.89:35
chr9	128724304	rs888230	A	C	3861.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr9	129097817	rs1230752	G	A	554.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr9	129184091	rs2286888	T	C	8537.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,319:1.00:319
chr9	129246177	rs2286886	T	C	4342.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:3,161:0.98:164
chr9	129377855	rs1336980	G	C	8839.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:0,330:1.00:330
chr9	129453229	rs2277158	A	G	9202.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:0,335:1.00:335
chr9	129455587	rs13295990	G	C	1539.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr9	129458062	.	G	A	2054.77	.	AC=2;AF=1.00;AN=2;DP=78;set=Intersection	GT:AD:AF:DP	1/1:2,72:0.97:74
chr9	129595895	rs3118994	T	C	4267.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr9	129831659	rs1281158	T	A	6454.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr9	129928600	rs946430	A	C	694.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr9	129961152	rs875382	C	T	1290.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr9	130075672	rs2779714	C	T	2166.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr9	130116826	rs4837144	G	A	297.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr9	130117638	rs145626536	C	A	5765.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr9	130164818	rs3802367	T	C	833.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr9	130164993	rs1138739	C	T	1211.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr9	130165995	rs1138740	C	T	8105.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr9	130166382	rs10819287	CG	GT	6396.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr9	130191186	rs13292096	C	T	1715.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr9	130197414	rs4504745	A	G	5372.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr9	130198100	rs7853047	A	G	1031.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr9	130198342	rs4500179	G	A	2041.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr9	130206669	rs2298182	C	T	11951.77	.	AC=2;AF=1.00;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	1/1:0,450:1.00:450
chr9	130210111	rs1139400	T	C	13634.77	.	AC=2;AF=1.00;AN=2;DB;DP=527;MQ=60.02;set=Intersection	GT:AD:AF:DP	1/1:1,521:1.00:522
chr9	130210946	rs2247573	A	G	1713.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr9	130212876	rs2247322	T	A	4026.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr9	130213422	rs4837153	T	C	1923.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:2,70:0.97:72
chr9	130213508	rs2244624	A	G	2910.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr9	130219669	rs2243906	C	T	10209.77	.	AC=2;AF=1.00;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	1/1:0,386:1.00:386
chr9	130219743	rs2243903	T	C	4730.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr9	130221388	rs2243767	T	C	7690.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr9	130241374	rs56957982	G	GCA	2919.73	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr9	130241822	rs1539569	T	C	1243.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:2,47:0.96:49
chr9	130242166	rs1539567	A	G	6654.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr9	130243534	rs371152397	AT	A	320.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.275;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=1.075;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.17;ReadPosRankSum=-0.451;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:43,34:0.44:77
chr9	130243620	rs10819297	C	T	821.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr9	130251615	rs10987668	C	A	1703.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr9	130251835	rs68012879	CAG	C	2308.73	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr9	130253286	rs5900748	G	GA	1809.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr9	130259618	rs2248822	A	C	4718.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr9	130259656	rs3802358	G	A	4165.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr9	130265014	rs10987671	C	T	1668.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr9	130269786	rs2245051	A	G	2973.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr9	130270683	rs2277194	G	C	1720.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.28;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr9	130270686	rs3824524	C	T	1802.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.97;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr9	130272417	rs11788951	G	A	6276.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:2,235:0.99:237
chr9	130286150	rs2251409	A	G	2981.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr9	130289615	rs2243558	C	G	3822.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.73;SOR=0.889;set=HC	GT:AD:AF:DP	1/1:0,143:1.00:143
chr9	130331257	rs151147273	CCCGCTCCCG	C	1343.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr9	130423271	rs372510099	CA	C	428.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.140;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.302;QD=3.46;ReadPosRankSum=0.084;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:74,50:0.40:124
chr9	130425345	rs139895327	T	A	1325.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr9	130473653	.	G	C	5225.77	.	AC=2;AF=1.00;AN=2;DP=217;set=Intersection	GT:AD:AF:DP	1/1:2,206:0.99:208
chr9	130494957	rs538066	T	C	8220.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr9	130507125	rs2233512	T	C	5800.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr9	130509584	rs2233504	C	T	692.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr9	130524817	rs3962613	C	T	5878.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr9	130536717	rs10760500	G	A	5532.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr9	130548589	rs11403971	G	GC	1830.73	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr9	130550044	rs3217740	C	T	2179.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr9	130565267	rs10760502	A	G	288.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr9	130578404	rs10760503	A	G	751.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr9	130579599	rs1330684	C	T	1632.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr9	130630639	rs913986	A	G	3500.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr9	130634944	rs743537	T	C	1922.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr9	130635540	rs2767398	A	G	3931.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr9	130648680	rs913983	G	A	6482.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr9	130649111	rs4837202	G	A	1676.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr9	130657020	rs5900777	GC	G	2238.73	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr9	130660232	rs3758330	T	C	6627.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr9	130670652	rs1043012	A	G	914.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr9	130670903	rs10760511	C	A	3233.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr9	130672106	rs7026378	A	G	3551.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr9	130672221	rs10739700	C	T	11345.77	.	AC=2;AF=1.00;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	1/1:0,425:1.00:425
chr9	130690412	rs10760515	G	C	3295.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr9	130698029	rs7997	G	C	4357.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:2,161:0.99:163
chr9	130698043	rs6781	A	G	4595.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:2,178:0.99:180
chr9	130699917	rs2274424	G	A	2548.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr9	130700251	rs6478802	T	C	1742.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr9	130707081	rs2274426	A	G	6689.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr9	130710726	rs4837212	A	G	5145.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:1,185:0.99:186
chr9	130710791	rs4837213	T	C	1692.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr9	130715922	rs2417062	A	G	16345.77	.	AC=2;AF=1.00;AN=2;DB;DP=618;set=Intersection	GT:AD:AF:DP	1/1:0,613:1.00:613
chr9	130829039	rs1539350	A	G	11238.77	.	AC=2;AF=1.00;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	1/1:0,429:1.00:429
chr9	130854127	rs10739712	A	G	1078.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr9	130860866	rs947624	T	C	12871.77	.	AC=2;AF=1.00;AN=2;DB;DP=494;set=Intersection	GT:AD:AF:DP	1/1:0,485:1.00:485
chr9	130861039	rs947623	A	G	7134.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr9	130864676	rs7859709	T	C	14517.77	.	AC=2;AF=1.00;AN=2;DB;DP=562;set=Intersection	GT:AD:AF:DP	1/1:1,552:1.00:553
chr9	130868312	rs7864867	G	C	3219.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr9	130868831	rs1418420	T	C	2020.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr9	130869499	rs4837239	A	T	16155.77	.	AC=2;AF=1.00;AN=2;DB;DP=592;set=Intersection	GT:AD:AF:DP	1/1:0,588:1.00:588
chr9	130883511	rs2040004	C	T	11240.77	.	AC=2;AF=1.00;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	1/1:0,420:1.00:420
chr9	130886906	rs4837241	A	G	2050.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr9	130889571	rs4837242	A	G	2138.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr9	130889600	rs4837243	C	T	4248.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr9	130889705	rs4837244	G	A	10092.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	1/1:0,375:1.00:375
chr9	130890449	rs11283643	A	AGGTGCGCGGC	24852.73	.	AC=2;AF=1.00;AN=2;DB;DP=519;set=Intersection	GT:AD:AF:DP	1/1:0,507:1.00:507
chr9	130914170	rs11794980	C	G	3646.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr9	130914434	rs2232629	A	G	5589.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:1,209:1.00:210
chr9	130922952	rs1539351	G	C	4830.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr9	130932396	rs144699223	AAC	A	17448.73	.	AC=2;AF=1.00;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	1/1:0,390:1.00:390
chr9	130940121	rs4075428	G	A	3072.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr9	130940822	rs3892074	C	T	6997.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr9	130942972	rs45585631	T	C	4448.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr9	130950328	.	C	CAAAAAAAAAAA	229.76	.	AC=2;AF=1.00;AN=2;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.72;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr9	130981064	rs3003602	C	T	1643.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr9	130982416	rs3003606	C	T	20869.77	.	AC=2;AF=1.00;AN=2;DB;DP=866;set=Intersection	GT:AD:AF:DP	1/1:1,832:1.00:833
chr9	130984430	rs3003608	C	A	7101.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:3,258:0.99:261
chr9	130984755	rs3003609	C	T	23803.77	.	AC=2;AF=1.00;AN=2;DB;DP=886;set=Intersection	GT:AD:AF:DP	1/1:2,879:1.00:881
chr9	130988616	rs3003612	C	T	2347.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr9	130994179	rs3003578	C	T	1980.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr9	130994225	.	C	G	3066.77	.	AC=2;AF=1.00;AN=2;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr9	131001846	rs57607566	CGTGT	C,CGT	3227.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.017;ClippingRankSum=0.000;DB;DP=398;ExcessHet=3.0103;FS=5.944;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.98;MQRankSum=-0.240;QD=23.39;ReadPosRankSum=0.105;SOR=0.144;set=HC	GT:AD:AF:DP	1/2:8,61,69:0.44,0.50:138
chr9	131015279	rs2267958	G	A	2261.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr9	131040842	.	C	CA	163.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.957;ClippingRankSum=0.000;DP=175;ExcessHet=3.0103;FS=1.745;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.01;ReadPosRankSum=0.289;SOR=0.936;set=HC	GT:AD:AF:DP	0/1:128,34:0.21:162
chr9	131085373	rs3003601	G	C	18497.77	.	AC=2;AF=1.00;AN=2;DB;DP=724;set=Intersection	GT:AD:AF:DP	1/1:0,710:1.00:710
chr9	131193665	rs1009850	A	C	6053.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr9	131218213	rs10819384	G	A	1050.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr9	131222541	rs6478832	A	G	4755.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr9	131235321	rs4512487	A	G	4611.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr9	131243750	.	T	TA	52.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.012;ClippingRankSum=0.000;DP=141;ExcessHet=3.0103;FS=8.456;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.43;ReadPosRankSum=-0.331;SOR=1.941;set=HC	GT:AD:AF:DP	0/1:100,24:0.19:124
chr9	131245175	.	CTT	C,CT	3112.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.520;ClippingRankSum=0.000;DP=509;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.06;MQRankSum=0.930;QD=9.67;ReadPosRankSum=-1.291;SOR=0.727;set=HC	GT:AD:AF:DP	1/2:66,130,126:0.40,0.39:322
chr9	131250084	rs372216616	AC	A	4435.73	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=1.923;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=14.484;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=28.43;ReadPosRankSum=0.065;SOR=1.498;set=HC	GT:AD:AF:DP	1/1:3,153:0.98:156
chr9	131250086	.	ACAC	A,AAC	3959.73	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;BaseQRankSum=-0.106;ClippingRankSum=0.000;DP=173;ExcessHet=3.0103;FS=13.381;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=26.58;ReadPosRankSum=0.007;SOR=1.244;set=HC	GT:AD:AF:DP	1/2:3,27,119:0.18,0.80:149
chr9	131284914	.	TAA	T	141.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.448;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;FS=2.643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.44;ReadPosRankSum=-0.391;SOR=0.156;set=HC	GT:AD:AF:DP	0/1:13,9:0.41:22
chr9	131287352	rs10988014	C	T	3000.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr9	131300143	rs7048583	G	A	1969.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr9	131317568	rs13293951	T	C	12730.77	.	AC=2;AF=1.00;AN=2;DB;DP=489;set=Intersection	GT:AD:AF:DP	1/1:4,481:0.99:485
chr9	131331320	rs2152833	C	T	868.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr9	131337389	rs2297768	C	T	3636.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr9	131337661	rs2297769	A	C	2373.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:1,80:0.99:81
chr9	131340306	rs4837280	A	G	3289.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr9	131340639	rs1890103	T	C	3320.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr9	131344607	rs5900808	GA	G	1322.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr9	131346218	rs10760566	A	C	11673.77	.	AC=2;AF=1.00;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	1/1:0,431:1.00:431
chr9	131346479	rs4240431	A	G	11553.77	.	AC=2;AF=1.00;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	1/1:0,423:1.00:423
chr9	131347165	rs4836615	G	A	6952.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.18;SOR=2.118;set=HC	GT:AD:AF:DP	1/1:0,161:1.00:161
chr9	131347169	rs4837284	C	T	6771.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.26;SOR=2.226;set=HC	GT:AD:AF:DP	1/1:0,153:1.00:153
chr9	131350112	rs4837286	A	G	2023.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr9	131360750	rs2227864	C	T	3209.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr9	131371672	rs13299607	G	T	2608.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:1,88:0.99:89
chr9	131374165	rs7024498	C	G	7547.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr9	131375701	rs1415568	A	G	6449.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr9	131379967	rs2227862	C	T	8153.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr9	131380149	rs3750332	C	G	3112.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr9	131380994	rs4837290	T	C	1428.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr9	131388643	rs3737308	C	T	3825.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr9	131389060	rs10694437	C	CAA	4327.73	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr9	131392553	rs7866175	G	A	4459.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr9	131397479	rs4837291	G	A	11132.77	.	AC=2;AF=1.00;AN=2;DB;DP=442;set=Intersection	GT:AD:AF:DP	1/1:2,432:1.00:434
chr9	131398343	rs947182	T	A	1441.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr9	131398636	rs10760570	C	T	7292.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr9	131403096	rs2298045	A	G	14317.77	.	AC=2;AF=1.00;AN=2;DB;DP=539;set=Intersection	GT:AD:AF:DP	1/1:1,534:1.00:535
chr9	131418828	rs4837292	A	C	3093.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:1,112:0.99:113
chr9	131452121	.	C	CG	592.73	.	AC=2;AF=1.00;AN=2;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr9	131452126	.	GCC	G	667.73	.	AC=2;AF=1.00;AN=2;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.70;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr9	131452137	.	C	CG	659.73	.	AC=2;AF=1.00;AN=2;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr9	131453331	rs4837293	G	A	2623.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr9	131455760	rs10739728	C	T	3186.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr9	131455903	rs4836618	C	T	9164.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:0,341:1.00:341
chr9	131456385	rs10637043	G	GTA	2905.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.404;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=3.346;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=0.526;QD=22.18;ReadPosRankSum=-1.262;SOR=1.185;set=HC	GT:AD:AF:DP	0/1:26,105:0.80:131
chr9	131465167	rs1572915	A	G	1817.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr9	131465284	rs3750321	G	T	853.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr9	131468251	rs1572916	T	C	9186.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	1/1:0,330:1.00:330
chr9	131475951	rs4837297	T	C	7107.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr9	131477544	rs7854055	G	A	6865.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr9	131479023	rs10739729	T	C	14205.77	.	AC=2;AF=1.00;AN=2;DB;DP=526;set=Intersection	GT:AD:AF:DP	1/1:0,517:1.00:517
chr9	131482467	rs3750325	T	C	10391.77	.	AC=2;AF=1.00;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	1/1:0,381:1.00:381
chr9	131483749	rs2900268	T	A	5583.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr9	131502112	rs2298044	A	G	1965.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr9	131502440	rs3818931	G	C	8496.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr9	131502460	rs7027146	G	T	6666.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr9	131505092	rs10739731	A	C	3761.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr9	131550722	rs1891076	C	G	2014.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr9	131553768	rs10760577	A	G	2951.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr9	131570178	rs45609236	T	C	9485.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.92;SOR=1.008;set=HC	GT:AD:AF:DP	1/1:0,216:1.00:216
chr9	131570183	rs7862546	C	G	9310.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.64;SOR=0.979;set=HC	GT:AD:AF:DP	1/1:0,204:1.00:204
chr9	131580998	rs2293969	C	T	316.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.12;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr9	131583170	rs2280845	T	C	2692.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr9	131585069	rs2280843	A	G	3652.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:1,132:0.99:133
chr9	131585205	rs2997919	T	C	460.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr9	131585216	rs2977994	G	T	308.96	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:1,12:0.92:13
chr9	131585994	rs2997918	T	C	2878.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:2,113:0.98:115
chr9	131586918	rs2997917	G	A	918.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr9	131587240	rs2293968	G	A	3788.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr9	131588652	rs2997914	T	C	5432.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr9	131589234	rs2977991	C	G	4522.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr9	131592193	rs2997906	T	C	6049.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr9	131599008	rs2759009	C	T	1673.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr9	131600111	rs2280841	T	C	5240.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr9	131600647	.	C	T	8988.77	.	AC=2;AF=1.00;AN=2;DP=342;set=Intersection	GT:AD:AF:DP	1/1:3,334:0.99:337
chr9	131602897	.	AT	A	116.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.180;ClippingRankSum=0.000;DP=86;ExcessHet=3.0103;FS=3.571;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.37;ReadPosRankSum=1.998;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:61,24:0.28:85
chr9	131670919	rs3750319	T	C	9072.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:0,341:1.00:341
chr9	131743701	.	CT	C	232.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.764;ClippingRankSum=0.000;DP=203;ExcessHet=3.0103;FS=3.939;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=-1.696;QD=1.47;ReadPosRankSum=-0.283;SOR=0.394;set=HC	GT:AD:AF:DP	0/1:117,41:0.26:158
chr9	131790531	rs11537529	C	T	1387.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr9	131846774	rs10988199	G	A	937.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr9	131846957	rs11541836	T	C	6576.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:2,252:0.99:254
chr9	131848382	rs7859344	T	A	2086.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr9	131860901	rs3118635	G	T	6463.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr9	131862073	rs3118638	G	A	3439.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr9	131862730	rs10819462	C	T	1679.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr9	131862781	rs10988204	G	A	3108.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr9	131863079	rs7866897	T	C	1448.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr9	131871144	rs2768629	A	G	2641.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr9	131871249	rs2541163	A	C	1831.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr9	131871435	rs2541162	A	C	3059.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr9	131873222	rs3814492	G	A	1385.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:2,53:0.96:55
chr9	131873638	rs3124501	T	G	323.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr9	131881492	rs10819466	G	C	234.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr9	131882705	rs200158794	AG	A	89.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.229;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.91;ReadPosRankSum=-1.016;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:3,10:0.77:13
chr9	131882761	rs9409311	T	C	1244.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.41;SOR=0.813;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr9	131882961	rs3739843	G	A	1826.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr9	131891152	rs7023900	C	G	935.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr9	131897221	rs7019373	C	T	514.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr9	131898880	rs1536548	A	G	3108.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr9	131899846	rs3118631	T	C	3341.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr9	131900180	rs2297112	G	A	596.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.87;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr9	131904617	rs57365080	T	TTG	772.73	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:5,26:0.84:31
chr9	131905814	rs913272	T	C	586.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr9	132084885	rs913771	A	G	2964.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr9	132374601	rs78833435	C	A	4207.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:2,158:0.99:160
chr9	132375432	rs2302779	C	T	3830.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:2,149:0.99:151
chr9	132377728	rs918166	C	T	6174.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:2,230:0.99:232
chr9	132377900	rs918165	C	T	2992.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr9	132382596	rs111606531	C	A	429.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr9	132396281	rs10819551	G	C	3100.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr9	132396655	rs1558873	A	G	2413.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr9	132401824	rs2302780	G	A	2199.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr9	132402908	rs2241247	C	G	3270.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr9	132404304	rs4837396	C	G	2396.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr9	132484782	rs1051445	T	C	1478.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr9	132515081	rs2241271	T	C	2508.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:1,93:0.99:94
chr9	132515247	rs11792431	G	A	4757.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:1,175:0.99:176
chr9	132566666	rs7029757	G	A	2912.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr9	132569442	rs2302820	G	A	2046.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr9	132585058	rs2296793	G	A	6362.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr9	132586468	rs13300897	C	T	2418.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr9	132590352	rs1806988	AG	GT	2019.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;JOINED;set=Intersection	GT:AD:AF:DP	1/1:2,48:0.96:50
chr9	132590431	rs732074	C	G	2678.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:2,102:0.98:104
chr9	132591272	rs55962905	T	C	2378.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr9	132591372	rs7032945	T	G	7079.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:2,259:0.99:261
chr9	132591425	rs7047271	C	T	7982.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr9	132591509	rs3818553	A	G	6167.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:1,229:1.00:230
chr9	132593982	rs2062801	T	C	385.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr9	132594362	rs2062800	C	T	1091.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr9	132594378	rs2062799	A	G	860.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr9	132595664	rs72755238	G	A	3104.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr9	132595685	rs45507500	C	G	3836.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr9	132596031	rs2274507	T	C	728.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:1,29:0.97:30
chr9	132596899	rs3814548	G	A	461.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr9	132597021	rs3814547	C	T	1675.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr9	132597621	rs11790613	T	C	1992.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr9	132618578	rs4836674	T	C	5930.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr9	132618807	rs7862315	G	A	2448.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr9	132620224	rs2417150	A	G	4368.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr9	132620364	rs10819568	T	C	7721.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr9	132620458	rs10819569	C	A	4482.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.52;SOR=2.063;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr9	132620464	rs10760638	C	T	4308.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.88;SOR=2.069;set=HC	GT:AD:AF:DP	1/1:0,96:1.00:96
chr9	132620620	rs2174156	T	C	1395.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr9	132620707	rs2134601	T	C	4148.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr9	132620990	rs2174157	T	C	1032.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr9	132623293	rs1503375	C	T	4579.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr9	132623868	rs10115249	T	C	6125.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr9	132623917	rs10124224	C	A	4825.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr9	132625417	rs4837419	CA	TG	826.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr9	132625452	rs35595055	C	G	1158.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr9	132625602	rs2900279	T	C	5345.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr9	132627480	rs913319	C	T	2666.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr9	132627723	rs913320	G	A	3564.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr9	132630231	rs913325	A	G	2426.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr9	132630664	rs10602985	TGAC	T	5535.73	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr9	132631680	rs6478920	T	C	8755.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	1/1:0,333:1.00:333
chr9	132632162	rs5900871	G	GC	706.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr9	132635653	rs1809959	A	G	4748.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr9	132635944	rs2296787	C	G	5917.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr9	132636031	rs4332226	A	G	7472.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.22;SOR=1.000;set=HC	GT:AD:AF:DP	1/1:0,169:1.00:169
chr9	132636031	.	AGT	GGC	2947	.	AC=2;AF=1.00;AN=2;BRF=0.44;FR=1.0000;HP=2;HapScore=1;MGOF=21;MMLQ=24;MQ=60.0;NF=45;NR=65;PP=2947;QD=20;SC=GAGGTGAGCCAGTGGCCTCGG;SbPval=0.55;Source=Platypus;TC=115;TCF=47;TCR=68;TR=110;WE=132636041;WS=132636021;set=Platypus	GT:AD:AF:DP	1/1:5,110:0.96:115
chr9	132636033	rs4415421	T	C	4266.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.951;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.70;ReadPosRankSum=0.208;SOR=1.058;set=HC	GT:AD:AF:DP	1/1:2,164:0.99:166
chr9	132637712	rs735115	G	A	9552.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:4,350:0.99:354
chr9	132640726	rs2296788	T	G	1411.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:6,59:0.91:65
chr9	132652677	rs60841376	G	GGA	224.77	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr9	132658044	rs2047837	T	C	1207.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.84;SOR=1.880;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr9	132658078	rs71738364	G	GT	288.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.241;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.01;ReadPosRankSum=-0.840;SOR=0.750;set=HC	GT:AD:AF:DP	0/1:65,31:0.32:96
chr9	132671359	rs3215850	T	TG	821.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr9	132672319	rs7855720	G	A	4808.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.28;SOR=1.030;set=HC	GT:AD:AF:DP	1/1:0,183:1.00:183
chr9	132678195	rs7867211	G	A	4419.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.15;SOR=0.970;set=HC	GT:AD:AF:DP	1/1:0,169:1.00:169
chr9	132681277	rs5900875	C	CT	387.75	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.956;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.51;ReadPosRankSum=0.917;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:8,23:0.74:31
chr9	132681619	rs1054874	C	T	713.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr9	132686186	rs4836680	A	G	1380.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr9	132689671	rs4837429	A	G	2939.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr9	132720720	rs11394970	G	GA	2264.73	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:9,107:0.92:116
chr9	132816398	rs5900882	T	TC	5244.73	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr9	132841808	rs6478942	G	C	248.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr9	132845723	rs7855078	T	A	1727.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr9	132845986	rs10819597	T	C	3548.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr9	132848653	rs11399718	C	CT	1227.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr9	132862830	rs10081664	AA	TC	3110.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr9	132863035	rs2277196	G	C	2073.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr9	132866883	rs7868997	T	C	1483.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr9	132866906	rs887536	C	T	857.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr9	132872686	rs4837460	A	G	4601.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr9	132887249	rs11316087	TA	T	172.19	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.169;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=10.76;ReadPosRankSum=1.555;SOR=0.527;set=HC	GT:AD:AF:DP	1/1:2,14:0.88:16
chr9	132891113	rs2286794	G	A	1681.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.26;SOR=2.554;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr9	132891113	.	GGT	AGC	1794	.	AC=2;AF=1.00;AN=2;BRF=0.17;FR=1.0000;HP=2;HapScore=1;MGOF=1;MMLQ=24;MQ=60.0;NF=7;NR=28;PP=1794;QD=52.7847964246;SC=GTGTGAATCGGGTCGGCTGCT;SbPval=0.65;Source=Platypus;TC=36;TCF=8;TCR=28;TR=35;WE=132891123;WS=132891103;set=Platypus	GT:AD:AF:DP	1/1:1,35:0.97:36
chr9	132891115	rs7853219	T	C	1681.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.26;SOR=2.554;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr9	132897231	rs1003416	G	A	4914.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr9	132962801	rs7037407	A	T	2492.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr9	132962816	rs7022964	T	C	3290.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr9	132963115	rs887534	T	G	2548.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr9	132963129	rs887535	G	A	2826.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr9	132963350	rs4837482	T	C	2372.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr9	132988709	rs2277200	T	G	2392.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:3,94:0.97:97
chr9	133058082	rs10739777	G	A	5434.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr9	133058197	rs7045548	C	A	1199.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr9	133069946	rs28435140	A	C	810.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr9	133072426	rs12353455	C	G	1630.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr9	133236138	rs199552416	ACCAT	A	188.84	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr9	133260316	rs7858563	T	G	4611.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:1,157:0.99:158
chr9	133260353	rs11244109	G	A	2615.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr9	133263923	rs7849839	T	C	4284.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr9	133264059	rs35750041	GC	G	598.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:2,25:0.93:27
chr9	133267449	rs79285457	C	T	4214.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr9	133270740	rs6597641	T	C	3240.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr9	133280580	rs1475732	C	G	1497.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr9	133281691	rs11244201	C	T	1314.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr9	133283255	rs10736862	A	G	805.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr9	133284310	rs10793975	G	A	1494.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr9	133294244	rs13294886	G	A	4511.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr9	133307004	rs11244312	G	A	901.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr9	133308780	rs1006615	C	T	3346.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:2,122:0.98:124
chr9	133324502	rs10123082	A	G	843.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr9	133325472	rs4740158	T	C	1252.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr9	133327439	rs1760275	T	C	1824.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr9	133346920	rs652313	A	G	7629.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr9	133346983	rs641510	A	G	4358.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr9	133347080	rs486889	G	A	786.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr9	133355371	rs540140	G	T	2620.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:2,97:0.98:99
chr9	133376153	rs2282219	A	G	3461.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:2,111:0.98:113
chr9	133472120	rs74743353	G	C	3911.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr9	133488447	rs2304812	G	A	2589.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr9	133510021	rs2304808	T	C	923.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr9	133710072	rs3134875	G	C	1981.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr9	133710246	rs2987902	A	T	6857.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr9	133710722	rs11433465	G	GC	397.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr9	133710740	rs11433464	G	GC	658.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.60;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr9	133710804	rs7866590	T	C	2806.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr9	133710819	rs11433463	T	TC	3389.73	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr9	133748083	rs2070997	A	G	283.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr9	133755754	rs12005009	T	C	884.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr9	133759717	rs200800111	C	T	8068.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr9	133759793	rs143837301	G	A	7033.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr9	133761001	rs1056171	A	G	5922.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr9	133768727	rs7029748	C	G	2294.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:2,78:0.97:80
chr9	133768791	rs188734175	A	G	5853.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:3,217:0.99:220
chr9	133769169	rs3847193	G	A	5418.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr9	133779270	rs190877064	C	T	646.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.12;SOR=5.549;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr9	133779279	rs183146108	G	C	679.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.49;SOR=5.670;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr9	133779448	rs11792889	A	G	4429.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr9	133911598	rs2275132	A	G	4927.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr9	133911821	rs2275130	C	T	1801.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr9	133924451	rs869457	C	T	2477.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr9	133927878	rs10901333	A	G	3692.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr9	133928345	rs12349966	C	T	6940.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr9	133936381	rs3824398	G	A	3471.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr9	133936571	rs3739510	C	G	4669.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr9	133942624	rs3765569	A	G	1393.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr9	133944522	rs2275142	C	T	804.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.36;SOR=4.514;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr9	133944525	rs2275141	A	C	804.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.71;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr9	133948049	rs2275140	A	G	897.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr9	133962930	rs7024108	C	T	8203.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:2,302:0.99:304
chr9	133963058	rs6597675	C	A	6455.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:2,237:0.99:239
chr9	133967295	rs710074	C	A	2888.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr9	133967310	rs10696088	T	TCA	2955.73	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr9	133986836	rs353528	C	T	608.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr9	133986848	rs353527	G	A	761.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr9	133986980	rs353526	T	G	3467.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr9	133987060	rs353525	G	A	2948.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr9	133996439	rs2281906	C	T	821.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr9	133996460	rs111758824	T	TG	1302.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr9	134003900	rs967174	A	G	3184.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr9	134004912	rs3736957	A	C	1677.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr9	134008475	rs142131228	T	C	4539.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr9	134008720	rs10901353	C	G	199.80	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.50;QD=28.54;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr9	134010236	rs16922	T	C	1041.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr9	134014642	.	CTTTTT	C	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.437;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.81;ReadPosRankSum=0.699;SOR=0.416;set=HC	GT:AD:AF:DP	0/1:18,5:0.22:23
chr9	134015781	rs2281903	A	G	156.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr9	134015899	rs2281902	C	G	2557.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr9	134016121	rs2281901	C	T	1871.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr9	134021630	rs2296710	A	G	12066.77	.	AC=2;AF=1.00;AN=2;DB;DP=474;set=Intersection	GT:AD:AF:DP	1/1:4,468:0.99:472
chr9	134025595	rs11244305	A	G	480.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr9	134062770	rs72380003	C	CT	247.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.075;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=10.683;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.000;QD=4.27;ReadPosRankSum=0.126;SOR=0.045;set=HC	GT:AD:AF:DP	0/1:30,28:0.48:58
chr9	134067795	rs4602942	G	A	1433.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr9	134103759	rs11244329	G	A	2016.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:2,73:0.97:75
chr9	134136515	rs352952	A	G	7983.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr9	134136677	rs352951	A	G	5007.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr9	134183370	.	C	G	9794.77	.	AC=2;AF=1.00;AN=2;DP=377;set=Intersection	GT:AD:AF:DP	1/1:0,374:1.00:374
chr9	134322324	rs2966340	G	A	2484.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:1,80:0.99:81
chr9	134323240	rs2994064	A	C	670.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr9	134342938	rs10793870	T	C	1458.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr9	134346315	rs4310250	T	C	11819.77	.	AC=2;AF=1.00;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	1/1:0,433:1.00:433
chr9	134348807	rs4276727	G	A	1362.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr9	134348818	rs5900941	TG	T	1589.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr9	134350323	rs10736851	C	G	5972.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr9	134350458	rs10751478	C	T	5535.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr9	134350647	rs10793873	T	C	3999.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr9	134351065	rs7858488	G	T	5996.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:1,221:1.00:222
chr9	134351343	rs11243403	C	T	13310.77	.	AC=2;AF=1.00;AN=2;DB;DP=506;set=Intersection	GT:AD:AF:DP	1/1:0,496:1.00:496
chr9	134358657	rs10901061	G	C	1059.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr9	134359918	rs10751480	G	C	1054.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr9	134360015	rs10793874	G	T	3153.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr9	134361318	rs3808829	C	A	2447.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr9	134361581	rs10793875	T	A	7175.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr9	134361627	rs10901062	G	A	3872.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr9	134382673	rs6597501	C	T	1831.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr9	134384277	rs11243404	T	C	3810.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr9	134384500	rs11999204	C	T	5498.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr9	134384513	rs28447664	A	G	4844.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr9	134385436	rs2296949	A	G	3945.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr9	134385599	rs2018621	A	G	5919.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr9	134386675	rs4740163	T	G	1628.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr9	134386744	rs10901065	T	C	2894.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr9	134386903	rs10901066	G	A	1794.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr9	134387315	rs10901068	C	G	1787.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr9	134387488	rs3739494	T	C	4960.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr9	134390870	rs11243406	C	A	3782.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr9	134394163	rs1547768	A	G	6444.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr9	134394646	rs2010635	A	G	3184.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr9	134395628	rs2277152	C	G	3496.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr9	134395687	rs2277153	C	A	1375.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr9	134397624	rs4740165	C	T	5662.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr9	134398534	rs3739495	T	C	1136.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr9	134401335	rs2296957	C	T	5080.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr9	134404199	rs4740260	A	G	925.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr9	134406071	rs7867616	C	G	2972.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr9	134406131	rs3904960	G	T	1652.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr9	134406647	rs4740261	A	G	459.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.80;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr9	134406650	rs7041225	C	T	459.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.80;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr9	134433463	rs4740167	T	C	2083.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr9	134465398	rs3818581	T	C	1715.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr9	134467578	rs3215862	GA	G	2309.73	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr9	134473517	rs2296950	T	C	5791.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr9	134477387	rs3842210	AG	A	524.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr9	134479293	rs7037668	A	G	2828.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr9	134480221	rs7045121	T	C	443.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr9	134497450	rs7023385	C	G	1680.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr9	134505545	rs11243457	A	C	461.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.78;SOR=4.047;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr9	134585181	rs11243480	C	T	603.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr9	135105964	rs4962173	A	G	5224.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:2,199:0.99:201
chr9	135114365	rs2274853	G	A	10549.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	1/1:0,384:1.00:384
chr9	135117178	rs12342966	T	G	1936.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr9	135202829	rs543573	T	C	4420.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr9	135203231	rs1183768	C	T	9085.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	1/1:0,334:1.00:334
chr9	135203409	rs1185193	A	C	5207.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:1,176:0.99:177
chr9	135206460	rs9411449	A	G	1871.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr9	135211609	rs111938515	AAC	A	1327.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr9	135221597	rs497650	G	A	847.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr9	135263573	rs556386	G	T	7038.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr9	135265876	rs471890	T	C	1984.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr9	135271987	rs1166321	T	C	3780.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;MQ=60.07;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr9	135272061	rs5900975	GT	G	295.37	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.603;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=2.567;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=0.589;QD=11.36;ReadPosRankSum=-0.597;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:4,22:0.85:26
chr9	135273507	rs569288	G	A	3357.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr9	135273607	rs504525	C	G	7109.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr9	135273759	rs5900976	G	GA	2926.73	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr9	135276710	rs553323	C	T	668.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr9	135374898	rs562350	T	C	13216.77	.	AC=2;AF=1.00;AN=2;DB;DP=509;set=Intersection	GT:AD:AF:DP	1/1:2,503:1.00:505
chr9	135388799	rs577416	G	A	5775.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr9	135470176	rs306549	C	G	878.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr9	135470414	rs306547	T	C	4342.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr9	135500944	rs17149380	A	G	4910.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr9	135507624	rs35126244	CGT	C	627.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr9	135517304	rs3739907	C	G	1445.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr9	135523692	.	TA	T	221.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.357;ClippingRankSum=0.000;DP=142;ExcessHet=3.0103;FS=1.831;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.80;ReadPosRankSum=-1.042;SOR=0.615;set=HC	GT:AD:AF:DP	0/1:91,32:0.26:123
chr9	135526546	rs200786970	C	CT	347.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.384;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.54;ReadPosRankSum=-0.294;SOR=0.963;set=HC	GT:AD:AF:DP	0/1:10,23:0.70:33
chr9	135533833	rs11243866	C	T	3357.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr9	135536540	rs4498679	G	A	3172.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr9	135538807	rs2583805	G	C	1473.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr9	135554566	rs371169	G	A	3963.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:2,139:0.99:141
chr9	135562800	rs456396	G	A	1168.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr9	135601354	rs396819	T	C	510.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr9	135601367	rs396801	G	C	459.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr9	135602727	rs1999121	T	C	805.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr9	135603108	rs139398120	TCC	T	451.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr9	135702490	rs13299768	T	C	1054.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr9	135730078	rs214640	T	G	3187.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr9	135739226	rs2251448	T	C	463.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr9	135764081	rs1062218	A	G	1563.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr9	135776034	rs1076160	C	T	1121.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr9	135863485	rs615667	A	G	2563.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr9	135863502	rs62579580	G	A	3414.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr9	135930735	rs645841	T	C	3436.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr9	135937248	rs2735395	G	T	539.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:13,25:0.66:38
chr9	135944286	rs142943621	A	G	265.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.993;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=41.39;MQRankSum=0.816;QD=13.29;ReadPosRankSum=1.666;SOR=0.437;set=HC	GT:AD:AF:DP	0/1:9,11:0.55:20
chr9	135946599	rs488087	C	T	13467.77	.	AC=2;AF=1.00;AN=2;DB;DP=520;set=Intersection	GT:AD:AF:DP	1/1:3,513:0.99:516
chr9	135947001	.	CCCCACGGGTGACTCCGAGACCGCCCCCGTGCCG	C	3524.73	.	AC=2;AF=1.00;AN=2;ClippingRankSum=0.000;DP=82;ExcessHet=3.0103;FS=4.367;MLEAC=2;MLEAF=1.000;MQ=66.35;MQRankSum=1.354;QD=42.98;SOR=1.215;set=HC	GT:AD:AF:DP	1/1:1,81:0.99:82
chr9	135961787	rs10901232	A	G	15890.77	.	AC=2;AF=1.00;AN=2;DB;DP=381;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.54;QD=42.38;SOR=1.222;set=HC	GT:AD:AF:DP	1/1:0,375:1.00:375
chr9	135961796	rs10901233	C	T	14806.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.43;QD=45.01;SOR=1.449;set=HC	GT:AD:AF:DP	1/1:0,329:1.00:329
chr9	135961809	rs679779	T	C	8313.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr9	135974079	rs1062356	G	C	5094.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr9	135976664	rs34018822	C	T	5144.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr9	135976698	rs35108384	G	A	8180.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr9	135977583	rs2519091	C	T	2089.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr9	135978153	rs694881	G	C	3684.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:1,135:0.99:136
chr9	135979751	rs598499	C	G	2106.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.38;SOR=0.872;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr9	135985796	rs3761824	C	T	2192.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr9	136030458	rs651453	C	T	1934.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr9	136031346	rs2073927	A	G	6053.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr9	136080746	rs1052517	A	G	2646.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr9	136081391	rs6597608	G	A	5746.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:2,185:0.99:187
chr9	136081466	rs6597609	C	T	3014.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr9	136081598	rs28507496	C	T	3804.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr9	136083580	rs2073870	T	G	1854.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr9	136083801	rs4310274	A	G	2108.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr9	136133380	.	CGGG	C	4030.73	.	AC=2;AF=1.00;AN=2;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr9	136133506	rs512770	A	G	3762.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr9	136133531	rs4962040	A	G	2994.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr9	136133582	rs8176712	AG	A	1604.73	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr9	136135137	.	GCTTCTGTCCACAC	G	1187.73	.	AC=2;AF=1.00;AN=2;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr9	136135195	rs549331	G	C	1833.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr9	136135237	rs549443	AT	GC	4130.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr9	136135365	rs624601	A	G	2001.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr9	136135444	rs551322	G	A	859.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr9	136136770	rs688976	A	C	8424.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr9	136185116	rs148915256	G	C	546.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr9	136185215	rs56106415	T	C	1035.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.00;QD=27.26;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr9	136185358	rs544622	T	C	272.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.18;QD=24.80;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr9	136201470	rs563666	C	A	968.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr9	136213521	rs616836	T	C	2565.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr9	136214955	rs553877	A	G	3899.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr9	136218590	rs484248	CA	AG	731.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr9	136223221	.	GCCCCGCACCCCGCACCCCGCA	G	168.84	.	AC=2;AF=1.00;AN=2;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr9	136223366	rs523304	G	A	614.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.42;QD=23.64;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr9	136227017	rs2296809	G	A	7825.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr9	136227260	rs12763	A	G	2753.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr9	136234124	rs1179033	A	G	3321.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr9	136274056	.	C	CTTTG,CTTTGTG	271	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.48;FR=0.5000,0.5000;HP=2;HapScore=2;MGOF=20;MMLQ=21;MQ=62.4;NF=0,0;NR=20,20;PP=66,271;QD=3.45;SC=CAAGTAACATCTGTGTGTGTG;SbPval=1.0;Source=Platypus;TC=25;TCF=2;TCR=23;TR=20,20;WE=136274064;WS=136274046;set=Platypus	GT:AF:DP	0/1:0.80:25
chr9	136274058	rs7030175	G	T	238.22	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.407;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=67.48;MQRankSum=3.622;QD=18.32;ReadPosRankSum=0.198;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:2,11:0.85:13
chr9	136277480	rs2285486	A	G	4499.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr9	136291063	rs3118667	C	T	7444.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr9	136291539	rs3118668	A	G	1704.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr9	136295290	rs3124773	A	C	3115.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr9	136298729	rs739469	G	C	4093.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr9	136304497	rs3124768	A	G	6189.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr9	136305439	rs2073932	G	A	7770.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:2,290:0.99:292
chr9	136308542	rs3124767	C	T	1632.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:2,63:0.97:65
chr9	136308733	rs36221464	G	A	366.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr9	136328657	rs3124765	T	C	10776.77	.	AC=2;AF=1.00;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	1/1:0,408:1.00:408
chr9	136340200	rs2073935	T	G	2699.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr9	136379890	rs17758315	A	G	4696.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr9	136385437	rs9802272	A	G	7250.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr9	136385453	rs9802273	A	G	6238.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr9	136404775	.	A	ACGGCTGTCCCGGCTGTCCCGGCTGTCCCGGCTGTCC	911.73	.	AC=2;AF=1.00;AN=2;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=70.13;SOR=5.283;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr9	136409457	rs9802736	A	G	626.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr9	136409580	rs9802778	T	G	4344.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr9	136412170	rs2073874	C	T	8898.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:0,337:1.00:337
chr9	136412236	rs2073875	A	T	9542.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:0,355:1.00:355
chr9	136412255	rs2073876	A	C	7837.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr9	136412346	rs2073878	C	T	2121.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr9	136412382	rs2073879	T	C	1228.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr9	136505114	rs1108580	A	G	4275.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr9	136505241	rs1108581	A	G	1887.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr9	136509275	rs1611124	G	T	2695.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr9	136509312	rs1611125	C	T	4681.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr9	136509370	rs4531	G	T	8745.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr9	136509451	rs1611127	C	T	9660.77	.	AC=2;AF=1.00;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	1/1:0,364:1.00:364
chr9	136509588	rs3025401	C	T	1397.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr9	136518097	rs77905	A	G	4882.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr9	136550476	rs9409845	C	T	1914.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr9	136570004	rs2502747	G	A	1754.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.87;SOR=2.419;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr9	136570004	.	GT	AC	648	.	AC=2;AF=1.00;AN=2;BRF=0.25;FR=1.0000;HP=1;HapScore=1;MGOF=5;MMLQ=24;MQ=60.0;NF=26;NR=5;PP=648;QD=22.6279959633;SC=GACGGGGCACGTGGAGGGGCA;SbPval=0.76;Source=Platypus;TC=34;TCF=27;TCR=7;TR=31;WE=136570013;WS=136569994;set=Platypus	GT:AD:AF:DP	1/1:3,31:0.91:34
chr9	136570005	rs2510247	T	C	1754.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.80;SOR=2.247;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr9	136573648	rs495464	A	T	1227.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:1,44:0.98:45
chr9	136599315	rs2488553	G	A	1413.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr9	136629256	rs66574029	CTG	C	148.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.953;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=0.972;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.08;ReadPosRankSum=-0.233;SOR=0.501;set=HC	GT:AD:AF:DP	0/1:120,18:0.13:138
chr9	136635409	rs590614	G	A	454.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr9	136640226	rs2488559	G	A	1394.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr9	136641235	rs667183	C	T	3665.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:1,138:0.99:139
chr9	136641313	rs2077065	G	C	2990.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:1,115:0.99:116
chr9	136643994	rs602990	T	C	7889.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:1,299:1.00:300
chr9	136645079	rs540626	G	C	5005.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr9	136648565	rs680458	G	A	1681.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr9	136651125	rs56072078	GGTGCCT	G	1742.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr9	136651185	rs2023664	G	A	511.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr9	136652465	rs2258889	A	G	1522.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr9	136804211	rs2073886	G	A	2135.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr9	136913527	rs140391716	G	A	8623.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:1,319:1.00:320
chr9	137006989	rs182770426	T	C	2338.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:1,87:0.99:88
chr9	137271318	rs35196866	C	A	3394.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr9	137271408	rs34133915	G	C	1215.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr9	137271454	rs34189335	A	G	553.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr9	137293761	rs2234753	G	A	3769.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr9	137299949	rs1805352	C	A	6906.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:1,265:1.00:266
chr9	137300725	rs1805349	G	A	829.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr9	137320855	rs3118570	G	T	2560.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr9	137321156	rs1536475	A	G	2503.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:1,83:0.99:84
chr9	137325822	rs3132293	T	C	1131.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr9	137328286	rs1805343	G	A	5080.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr9	137600270	rs4841925	T	G	799.74	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:4,32:0.89:36
chr9	137600687	rs3128588	C	T	11103.77	.	AC=2;AF=1.00;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	1/1:0,398:1.00:398
chr9	137619195	rs3124299	C	T	4524.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr9	137619425	rs3109683	T	G	300.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr9	137620474	rs3124302	C	T	5766.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr9	137622033	rs3124308	A	G	1872.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.68;SOR=3.003;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr9	137622039	rs3128598	G	A	1991.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.38;SOR=3.033;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr9	137622455	rs3128600	A	C	1694.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr9	137623555	rs3109675	T	C	4484.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr9	137623601	rs3124310	C	G	2374.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr9	137658722	rs4842158	G	A	3206.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.54;SOR=1.148;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr9	137658730	rs4842159	T	C	3404.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.10;SOR=1.068;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr9	137659005	rs4842160	A	T	3551.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr9	137660194	rs4842162	G	T	3025.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr9	137660375	rs10776900	A	G	2776.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:2,106:0.98:108
chr9	137686906	rs4072883	C	T	5111.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr9	137687038	rs4072882	A	G	8430.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr9	137688048	rs10776902	T	C	2270.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr9	137688577	rs3811161	A	G	2157.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr9	137688624	rs3811160	A	G	4489.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr9	137688657	rs3811159	A	G	6979.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr9	137688780	rs142676375	GCCTGTCCCCTCCAAAACCCA	G	12930.73	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr9	137688863	rs72774465	G	A	4652.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr9	137690318	rs4240707	A	T	6590.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr9	137694032	rs10858281	C	A	1783.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr9	137702200	rs3827850	G	C	3855.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.402;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=3.426;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=38.56;ReadPosRankSum=-1.139;SOR=2.208;set=HC	GT:AD:AF:DP	1/1:2,98:0.98:100
chr9	137702209	rs3827849	G	A	3431.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.810;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=4.613;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=43.44;ReadPosRankSum=0.052;SOR=2.955;set=HC	GT:AD:AF:DP	1/1:2,77:0.97:79
chr9	137707942	rs4841934	T	C	2657.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr9	137708803	rs3811149	A	G	2629.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr9	137708934	rs10858282	T	G	2377.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr9	137708960	rs10776910	A	C	1706.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr9	137708973	rs10858283	A	G	1281.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr9	137709517	rs7854010	T	C	1945.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr9	137709780	rs11792894	T	C	2707.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr9	137709795	rs7847840	C	T	2237.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr9	137710961	rs10745388	G	A	2699.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr9	137711997	rs2228560	G	C	6849.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr9	137714027	rs9697186	T	C	1229.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.20;SOR=1.654;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr9	137715150	rs3128599	AT	TG	4800.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;JOINED;set=Intersection	GT:AD:AF:DP	1/1:2,164:0.99:166
chr9	137717610	rs7868111	T	C	3655.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr9	137742018	.	A	ATATCACACCTCCCAGGAAGCACGG	14534.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.692;ClippingRankSum=0.000;DP=381;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.18;MQRankSum=1.014;QD=56.12;ReadPosRankSum=1.055;SOR=0.468;set=HC	GT:AD:AF:DP	1/1:4,255:0.98:259
chr9	137742124	rs62571442	G	A	21948.77	.	AC=2;AF=1.00;AN=2;DB;DP=844;set=Intersection	GT:AD:AF:DP	1/1:2,839:1.00:841
chr9	137742496	.	TGGGATCAGACCTCCCAGGGAGCACGGGATCACACCTCCCAGGAAAGCAC	T	7423.73	.	AC=2;AF=1.00;AN=2;DP=464;set=Intersection	GT:AD:AF:DP	1/1:2,267:0.99:269
chr9	137772792	rs3128627	C	T	1763.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr9	137801314	rs2989734	A	G	6546.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr9	137801416	rs2989735	T	C	7746.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr9	137801800	rs1071583	T	C	8399.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr9	137804360	rs2274845	A	G	7022.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;MQ=59.99;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr9	137804830	rs2070622	G	C	1147.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr9	137806329	rs11421281	T	TC	11240.73	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:1,253:1.00:254
chr9	137806334	rs2989721	A	G	11222.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.438;ClippingRankSum=0.000;DB;DP=253;ExcessHet=3.0103;FS=3.466;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=44.71;ReadPosRankSum=-1.401;SOR=0.567;set=HC	GT:AD:AF:DP	1/1:1,250:1.00:251
chr9	137806344	rs3012788	C	T	10178.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.724;ClippingRankSum=0.000;DB;DP=224;ExcessHet=3.0103;FS=3.641;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=45.85;ReadPosRankSum=-0.906;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:1,221:1.00:222
chr9	137806487	rs2989722	G	A	1251.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:1,42:0.98:43
chr9	137806783	rs3012789	G	A	3935.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr9	137808427	rs2382714	T	A	708.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr9	137809685	rs10858293	C	A	3030.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr9	137809861	rs10117466	G	T	785.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr9	137968919	rs61043559	G	GAA	8613.73	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr9	137982127	rs500461	T	C	3728.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr9	137982220	rs10628208	A	ATGTG	1408.73	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:18,47:0.72:65
chr9	137982232	rs56337838	T	G	231.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.920;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.33;MQRankSum=0.000;QD=3.09;ReadPosRankSum=0.421;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:61,14:0.19:75
chr9	137982234	rs10672761	G	GTT	47.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.218;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.33;MQRankSum=0.000;QD=0.64;ReadPosRankSum=1.986;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:66,9:0.12:75
chr9	138387483	rs2274650	G	A	2408.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr9	138391299	rs7037251	T	A	6646.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr9	138391517	rs2274651	A	C	2547.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr9	138391774	rs2274652	C	T	2197.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr9	138438189	rs141004230	G	T	839.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr9	138438190	rs200992384	AAGGCTGGCTTCTGACCCCGTGCTCCC	A	830.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr9	138439005	rs504061	A	C	2290.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr9	138440525	rs2590500	C	G	5178.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.79;QD=45.03;SOR=2.242;set=HC	GT:AD:AF:DP	1/1:0,115:1.00:115
chr9	138440525	.	CTT	GTC	2947	.	AC=2;AF=1.00;AN=2;BRF=0.5;FR=1.0000;HP=2;HapScore=1;MGOF=7;MMLQ=24;MQ=56.03;NF=68;NR=22;PP=2947;QD=20;SC=CTGTCCCCACCTTGGCTCACC;SbPval=0.55;Source=Platypus;TC=93;TCF=70;TCR=23;TR=90;WE=138440535;WS=138440515;set=Platypus	GT:AD:AF:DP	1/1:3,90:0.97:93
chr9	138440527	rs2590501	T	C	5178.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.86;QD=44.26;SOR=2.282;set=HC	GT:AD:AF:DP	1/1:0,117:1.00:117
chr9	138440641	rs2853652	T	C	12786.77	.	AC=2;AF=1.00;AN=2;DB;DP=484;set=Intersection	GT:AD:AF:DP	1/1:0,483:1.00:483
chr9	138440726	rs3827838	C	T	14874.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.54;SOR=0.860;set=HC	GT:AD:AF:DP	1/1:0,334:1.00:334
chr9	138440726	.	CCA	TCG	2947	.	AC=2;AF=1.00;AN=2;BRF=0.47;FR=1.0000;HP=4;HapScore=1;MGOF=29;MMLQ=24;MQ=60.0;NF=104;NR=125;PP=2947;QD=20;SC=CCCATGACCCCCATGTCCTCC;SbPval=0.51;Source=Platypus;TC=236;TCF=107;TCR=129;TR=229;WE=138440736;WS=138440716;set=Platypus	GT:AD:AF:DP	1/1:7,229:0.97:236
chr9	138440728	rs3827839	A	G	14933.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.95;SOR=0.887;set=HC	GT:AD:AF:DP	1/1:0,325:1.00:325
chr9	138440756	rs3827841	G	A	10755.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr9	138441081	rs2590502	C	T	1620.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.77;QD=29.47;SOR=2.712;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr9	138453811	rs697448	A	G	1449.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.36;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr9	138516531	rs7466817	G	C	1245.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;MQ=60.28;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr9	138516570	rs58631066	CTTTTTTTTTTTTT	C	403.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.63;QD=40.37;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr9	138518010	rs1333240	A	G	1830.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:1,72:0.99:73
chr9	138557256	rs492708	C	T	3171.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr9	138586198	rs572335	G	A	5274.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr9	138586309	rs484524	A	G	10403.77	.	AC=2;AF=1.00;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	1/1:0,378:1.00:378
chr9	138586966	rs3119932	GC	AA	1853.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr9	138587203	rs2769033	A	G	725.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr9	138587220	rs2483364	T	C	645.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr9	138589311	rs7036532	G	A	593.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr9	138590138	rs506498	T	C	3513.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr9	138590347	rs529976	C	T	3947.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr9	138590680	rs474061	G	C	965.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr9	138590928	rs471525	C	T	2385.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr9	138591230	rs558113	C	T	5839.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr9	138591266	rs559326	A	G	5379.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr9	138594266	rs5901089	A	AC	1800.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr9	138634454	rs60345996	CCCCCAG	C	2875.73	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr9	138676328	.	GCTCCCTCCCTCCCTCCCTCC	G	623.73	.	AC=2;AF=1.00;AN=2;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr9	138707727	rs913342	C	G	2791.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr9	138754582	rs2039330	A	C	641.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr9	138816898	rs4842048	T	C	4774.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.62;SOR=1.265;set=HC	GT:AD:AF:DP	1/1:0,107:1.00:107
chr9	138816906	rs4842049	T	C	5018.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.27;SOR=1.140;set=HC	GT:AD:AF:DP	1/1:0,116:1.00:116
chr9	138817178	rs10776854	C	A	695.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr9	138825117	rs6569	A	C	1714.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:1,56:0.98:57
chr9	138837113	rs10776856	T	C	416.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr9	138837958	rs2297691	C	T	2923.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr9	138838140	rs7028495	T	C	2436.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr9	138838305	rs2297690	G	A	2321.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr9	138839888	rs2297689	C	T	2129.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr9	138898893	rs4842070	C	G	1599.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr9	138899253	rs56162840	G	GCA	7086.73	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr9	138903671	rs9626	A	G	8206.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr9	138904997	rs2280485	T	C	4515.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:1,180:0.99:181
chr9	138905136	rs2280486	C	T	3571.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr9	138905884	rs11103273	T	C	1074.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.28;SOR=1.040;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr9	138908250	rs2275107	C	T	828.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr9	138927645	rs200424009	T	A	109.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.75;QD=27.26;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr9	139089679	rs7860634	G	A	1915.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr9	139089717	rs7850466	TA	GC	1590.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr9	139090465	rs3215774	T	TC	3844.73	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:8,143:0.95:151
chr9	139096622	rs369430724	T	C	2364.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr9	139137626	rs79849109	C	T	2225.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr9	139142710	rs62579871	G	A	3987.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr9	139142808	rs66470520	T	C	3679.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr9	139221798	rs76115134	T	C	984.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr9	139221808	rs144733220	ACCCCCTC	A	532.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:2,21:0.91:23
chr9	139222174	rs28495820	T	C	367.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.52;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr9	139222232	rs62579957	G	A	365.77	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr9	139222249	rs62579958	C	T	415.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.65;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr9	139230292	rs28447209	T	G	1052.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr9	139230585	rs28583929	T	C	1870.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr9	139243334	rs28429551	T	A	3350.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr9	139249991	rs28603210	T	C	1099.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr9	139252495	rs3812547	G	A	9200.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:0,351:1.00:351
chr9	139277994	rs147271628	CGCT	C	133.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.531;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.85;ReadPosRankSum=1.153;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:142,15:0.10:157
chr9	139302015	rs59642510	TA	T	75.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.675;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=5.904;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.23;ReadPosRankSum=-0.368;SOR=1.144;set=HC	GT:AD:AF:DP	0/1:20,14:0.41:34
chr9	139333049	rs5901103	GCCCT	G	2256.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr9	139360354	rs3124590	A	G	1446.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr9	139391636	rs2229974	G	A	5141.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr9	139396408	rs3124594	A	G	5414.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:2,207:0.99:209
chr9	139397707	rs10521	G	A	6679.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr9	139400406	rs11145764	C	T	162.79	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr9	139400904	rs4880098	C	T	560.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr9	139401504	rs3124596	G	A	765.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr9	139402663	rs3124597	T	C	2452.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr9	139402908	rs3812603	T	C	1814.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr9	139403240	rs35987207	T	TG	219.75	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr9	139403268	rs3125000	T	C	403.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr9	139403554	rs3124598	T	C	1597.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr9	139405261	rs3125001	C	T	4916.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr9	139410424	rs3125006	A	G	2263.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr9	139564474	rs2297537	C	G	2598.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr9	139565150	rs4636297	A	G	6889.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr9	139566823	rs1051828	A	G	3983.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr9	139569066	rs9411215	A	G	1434.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr9	139572068	rs2236514	C	G	3338.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.37;SOR=1.255;set=HC	GT:AD:AF:DP	1/1:0,122:1.00:122
chr9	139616742	rs945384	A	G	4479.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr9	139616840	rs3739939	G	A	2230.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr9	139621168	rs2275160	G	A	2486.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr9	139639532	rs145717467	CGGCCCACGCACCACACAGCTCCCAACGTGGGCCCCGAGT	C	5133.73	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:1,119:0.99:120
chr9	139642961	rs2811728	G	A	7261.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr9	139649580	rs879467	G	A	2352.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr9	139650060	rs2784068	C	A	7188.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr9	139650167	.	G	GAACAGCATGGGGAACAGTGCAGGGAACCCTGCAGGGAACAGCATGGGGAACGGTGCAGGA	1416.73	.	AC=1;AF=0.500;AN=2;DP=350;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=157.41;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:9,0:0:9
chr9	139650595	rs35874639	T	G	19450.77	.	AC=2;AF=1.00;AN=2;DB;DP=471;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.69;QD=41.83;SOR=0.697;set=HC	GT:AD:AF:DP	1/1:0,465:1.00:465
chr9	139650619	rs35341952	A	G	20094.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.542;ClippingRankSum=0.000;DB;DP=771;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.51;MQRankSum=-0.196;QD=26.37;ReadPosRankSum=-0.512;SOR=0.287;set=HC	GT:AD:AF:DP	1/1:1,761:1.00:762
chr9	139651163	rs57411373	A	AG	1269.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr9	139652338	rs9411272	C	G	2978.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr9	139653055	rs11145867	C	T	1356.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr9	139656618	rs2484658	T	C	1104.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr9	139656670	rs2297722	T	C	3122.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr9	139656706	rs2297723	A	C	3549.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr9	139657834	rs9987876	G	C	3898.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr9	139658051	rs4880070	G	T	943.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr9	139658576	rs4880140	G	C	1312.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr9	139690840	rs1055995	G	A	1278.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr9	139699964	rs2811793	T	C	1661.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr9	139700605	rs2811795	T	C	3119.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr9	139701108	rs2254143	A	C	7427.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr9	139701983	rs3739944	C	G	2259.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr9	139702908	rs7864908	C	T	520.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr9	139730129	rs2811744	T	C	833.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr9	139731969	rs2811742	C	T	1303.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr9	139732331	rs2811741	G	C	760.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr9	139739643	rs10870132	T	C	871.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr9	139744807	rs872463	A	G	3370.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr9	139746992	rs10123375	G	A	3446.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr9	139749067	rs7869864	C	T	3707.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr9	139752899	rs2275156	T	G	12259.77	.	AC=2;AF=1.00;AN=2;DB;DP=470;set=Intersection	GT:AD:AF:DP	1/1:0,464:1.00:464
chr9	139760830	rs76229681	CG	C	3390.73	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:1,109:0.99:110
chr9	139804274	rs4567138	G	A	1814.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr9	139804346	rs4448378	C	T	5421.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr9	139815053	rs10781522	G	A	1007.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr9	139818169	rs17250631	CTT	C	1206.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr9	139820421	rs7852970	G	A	4090.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:1,146:0.99:147
chr9	139836362	rs7040705	G	A	768.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr9	139837700	rs11339872	AC	A	409.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.311;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.54;MQRankSum=0.471;QD=21.57;ReadPosRankSum=-0.640;SOR=0.223;set=HC	GT:AD:AF:DP	1/1:1,18:0.95:19
chr9	139837990	rs2271872	G	C	1066.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr9	139839904	rs2071006	T	G	7461.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.38;SOR=1.019;set=HC	GT:AD:AF:DP	1/1:0,294:1.00:294
chr9	139840471	rs7862602	G	T	4485.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:2,168:0.99:170
chr9	139840543	rs7850844	A	G	8418.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:2,312:0.99:314
chr9	139840859	rs908830	T	C	11631.77	.	AC=2;AF=1.00;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	1/1:1,427:1.00:428
chr9	139847570	rs884218	T	C	2542.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr9	139848273	rs2271869	A	G	9883.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.295;ClippingRankSum=0.000;DB;DP=225;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=44.32;ReadPosRankSum=0.638;SOR=0.296;set=HC	GT:AD:AF:DP	1/1:1,222:1.00:223
chr9	139848278	rs2271868	T	C	9826.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.002;ClippingRankSum=0.000;DB;DP=222;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=44.67;ReadPosRankSum=0.418;SOR=0.284;set=HC	GT:AD:AF:DP	1/1:1,219:1.00:220
chr9	139848688	rs4880175	C	T	7068.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr9	139872048	rs4880179	A	G	3521.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr9	139875318	rs146717258	C	CCATT	1467.73	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.15;QD=43.17;SOR=2.049;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr9	139877698	rs968516	A	C	11299.77	.	AC=2;AF=1.00;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	1/1:0,426:1.00:426
chr9	139878828	rs4880082	T	C	1786.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr9	139879067	rs2049042	T	C	2525.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr9	139879113	rs2049041	G	A	3849.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr9	139887042	rs10870159	G	C	2505.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr9	139889844	rs4880183	T	G	4714.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr9	139902214	rs10870161	A	G	411.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr9	139902712	rs4880185	A	G	7854.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr9	139902786	rs4880186	G	C	14971.77	.	AC=2;AF=1.00;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	1/1:0,343:1.00:343
chr9	139902797	rs4880187	C	G	15239.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:0,350:1.00:350
chr9	139903352	rs59031144	G	GC	5319.73	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:4,177:0.98:181
chr9	139904037	rs7048567	A	G	7219.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr9	139906359	rs2271862	G	A	7864.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:2,293:0.99:295
chr9	139906513	rs2271863	T	C	4788.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr9	139906686	rs45540434	G	A	1204.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr9	139907842	rs4880188	T	C	1745.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr9	139908139	rs10870162	A	G	922.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr9	139908265	rs10781531	T	C	4350.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr9	139910648	rs6560657	T	C	6100.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr9	139912178	rs879854	G	A	5965.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr9	139912484	rs908832	A	G	8924.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	1/1:0,340:1.00:340
chr9	139913239	rs908828	T	G	5887.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr9	139916471	rs142576618	A	ATGGCTCAGATGGGGGTG	2576.73	.	AC=2;AF=1.00;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.24;SOR=3.150;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr9	139923265	rs4880189	A	G	4152.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr9	139926402	rs7469569	T	C	11926.77	.	AC=2;AF=1.00;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	1/1:0,443:1.00:443
chr9	139932419	.	CT	C	88.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.96;ReadPosRankSum=1.852;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:19,11:0.37:30
chr9	139937795	rs10781535	T	C	8721.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.39;SOR=0.852;set=HC	GT:AD:AF:DP	1/1:0,201:1.00:201
chr9	139937799	rs10781536	G	A	8614.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.58;SOR=0.913;set=HC	GT:AD:AF:DP	1/1:0,189:1.00:189
chr9	139943549	rs7390981	G	A	5180.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr9	139944496	rs10870169	T	C	2183.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:1,55:0.98:56
chr9	139944509	rs10735661	T	C	1947.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:1,43:0.98:44
chr9	139944548	rs12555382	T	C	247.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:6,7:0.54:13
chr9	139944689	.	T	C	905	.	AC=2;AF=1.00;AN=2;BRF=0.59;FR=1.0000;HP=3;HapScore=1;MGOF=33;MMLQ=24;MQ=46.02;NF=34;NR=9;PP=905;QD=21.8551444778;SC=CACCCGCCTGTCCCTACCCAC;SbPval=0.79;Source=Platypus;TC=53;TCF=39;TCR=14;TR=43;WE=139944697;WS=139944679;set=Platypus	GT:AD:AF:DP	1/1:10,43:0.81:53
chr9	139945051	rs7869520	A	G	2286.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr9	139946804	rs2271867	C	G	2593.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.95;QD=27.02;SOR=2.906;set=HC	GT:AD:AF:DP	1/1:0,96:1.00:96
chr9	139946905	rs34679600	C	CA	1428.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:1,34:0.97:35
chr9	139946916	rs11145979	G	A	1411.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr9	139960178	rs2176674	A	G	6345.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr9	139960894	rs72763246	C	T	1668.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr9	139972900	rs10870176	T	C	18201.77	.	AC=2;AF=1.00;AN=2;DB;DP=664;set=Intersection	GT:AD:AF:DP	1/1:2,650:1.00:652
chr9	139973186	rs7390974	T	C	2983.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr9	139973614	rs118178799	T	C	10680.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr9	139973629	rs7390710	A	C	10377.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr9	139973652	rs7390711	A	G	8947.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr9	139975108	rs9314874	T	C	6437.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr9	139977195	rs4390039	T	C	1301.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:1,46:0.98:47
chr9	139981241	rs968732	GT	CG	4840.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr9	139981627	rs968733	A	G	3037.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr9	139990906	rs4880199	T	C	638.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr9	139994102	rs4880200	G	A	2317.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr9	139995361	rs11425109	C	CA	1734.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr9	139996376	rs72382842	TACAC	T	41395.73	.	AC=2;AF=1.00;AN=2;DB;DP=981;set=Intersection	GT:AD:AF:DP	1/1:4,926:1.00:930
chr9	139996691	.	ACATT	A	2968	.	AC=1;AF=0.500;AN=2;BRF=0.69;FR=0.5000;HP=2;HapScore=1;MGOF=57;MMLQ=24;MQ=51.47;NF=78;NR=231;PP=2968;QD=20;SC=GGTGGTACACACATTCATGCT;SbPval=0.16;Source=Platypus;TC=441;TCF=90;TCR=351;TR=309;WE=139996748;WS=139996675;set=Platypus	GT:AD:AF:DP	0/1:132,309:0.70:441
chr9	139996739	.	A	ACG	2954	.	AC=1;AF=0.500;AN=2;BRF=0.69;FR=0.5000;HP=2;HapScore=1;MGOF=57;MMLQ=24;MQ=52.55;NF=50;NR=188;PP=2954;QD=20;SC=ACACACATTCACTGTTGCAGG;SbPval=0.98;Source=Platypus;TC=447;TCF=152;TCR=295;TR=238;WE=139996748;WS=139996675;set=Platypus	GT:AD:AF:DP	1/0:209,238:0.53:447
chr9	139996768	.	T	TAC	2964	.	AC=1;AF=0.500;AN=2;BRF=0.68;FR=0.5000;HP=1;HapScore=1;MGOF=83;MMLQ=24;MQ=51.6;NF=28;NR=141;PP=2964;QD=20;SC=TCGGTGGTGTTACACATTCAC;SbPval=0.99;Source=Platypus;TC=450;TCF=142;TCR=308;TR=169;WE=139996786;WS=139996754;set=Platypus	GT:AD:AF:DP	1/0:281,169:0.38:450
chr9	139996933	rs10118812	T	G	23639.77	.	AC=2;AF=1.00;AN=2;DB;DP=886;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.75;QD=27.02;SOR=0.781;set=HC	GT:AD:AF:DP	1/1:0,875:1.00:875
chr9	139997001	rs72108373	TACAC	T	32127.73	.	AC=2;AF=1.00;AN=2;DB;DP=779;set=Intersection	GT:AD:AF:DP	1/1:7,727:0.99:734
chr9	139997161	.	TACAC	T	2312	.	AC=1;AF=0.500;AN=2;BRF=0.63;FR=0.5000;HP=1;HapScore=1;MGOF=56;MMLQ=24;MQ=48.03;NF=120;NR=112;PP=2312;QD=10.0905172414;SC=TCGGTGCTGTTACACACATTC;SbPval=0.05;Source=Platypus;TC=730;TCF=285;TCR=445;TR=232;WE=139997172;WS=139997099;set=Platypus	GT:AD:AF:DP	0/1:498,232:0.32:730
chr9	139997167	.	CATTCAT	C	2968	.	AC=1;AF=0.500;AN=2;BRF=0.68;FR=0.5000;HP=2;HapScore=1;MGOF=54;MMLQ=24;MQ=46.29;NF=157;NR=134;PP=2968;QD=20;SC=CTGTTACACACATTCATGCTG;SbPval=0.05;Source=Platypus;TC=811;TCF=327;TCR=484;TR=291;WE=139997180;WS=139997099;set=Platypus	GT:AD:AF:DP	0/1:520,291:0.36:811
chr9	139997293	rs142818580	C	T	29170.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.189;ClippingRankSum=0.000;DB;DP=1076;ExcessHet=3.0103;FS=0.644;MLEAC=1;MLEAF=0.500;MQ=57.31;MQRankSum=21.382;QD=28.10;ReadPosRankSum=-5.760;SOR=0.604;set=HC	GT:AD:AF:DP	0/1:226,812:0.78:1038
chr9	139997294	rs62584555	A	G	29170.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=11.509;ClippingRankSum=0.000;DB;DP=1074;ExcessHet=3.0103;FS=0.642;MLEAC=1;MLEAF=0.500;MQ=57.34;MQRankSum=21.254;QD=28.13;ReadPosRankSum=-6.283;SOR=0.605;set=HC	GT:AD:AF:DP	0/1:223,814:0.78:1037
chr9	139997295	.	C	G	29170.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=4.099;ClippingRankSum=0.000;DP=1103;ExcessHet=3.0103;FS=0.642;MLEAC=1;MLEAF=0.500;MQ=57.06;MQRankSum=21.287;QD=28.27;ReadPosRankSum=-5.823;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:223,809:0.78:1032
chr9	139997563	.	A	ACATT	2968	.	AC=1;AF=0.500;AN=2;BRF=0.68;FR=0.5000;HP=2;HapScore=2;MGOF=76;MMLQ=25;MQ=43.58;NF=69;NR=399;PP=2968;QD=20;SC=GGTGTTACACACATGCTGTTG;SbPval=0.98;Source=Platypus;TC=939;TCF=228;TCR=711;TR=468;WE=139997574;WS=139997548;set=Platypus	GT:AD:AF:DP	0/1:471,468:0.50:939
chr9	139997591	.	GGT	G	2966	.	AC=1;AF=0.500;AN=2;BRF=0.69;FR=0.5000;HP=1;HapScore=1;MGOF=75;MMLQ=24;MQ=43.56;NF=65;NR=334;PP=2966;QD=20;SC=GCAGGTCGGTGGTGTTACATT;SbPval=0.95;Source=Platypus;TC=880;TCF=211;TCR=669;TR=399;WE=139997615;WS=139997581;set=Platypus	GT:AD:AF:DP	0/1:481,399:0.45:880
chr9	139997630	.	G	GTGT	2964	.	AC=1;AF=0.500;AN=2;BRF=0.69;FR=0.5000;HP=1;HapScore=1;MGOF=63;MMLQ=24;MQ=44.83;NF=63;NR=213;PP=2964;QD=20;SC=CAGGTCGGTGGTACACACATT;SbPval=0.87;Source=Platypus;TC=750;TCF=219;TCR=531;TR=276;WE=139997654;WS=139997620;set=Platypus	GT:AD:AF:DP	0/1:474,276:0.37:750
chr9	139997719	rs111877141	A	G	20235.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.586;ClippingRankSum=0.000;DB;DP=816;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.85;MQRankSum=6.587;QD=25.20;ReadPosRankSum=3.265;SOR=0.742;set=HC	GT:AD:AF:DP	1/1:6,797:0.99:803
chr9	139997747	.	T	TACAC	2964	.	AC=1;AF=0.500;AN=2;BRF=0.66;FR=0.5000;HP=2;HapScore=1;MGOF=76;MMLQ=22;MQ=48.32;NF=24;NR=198;PP=2964;QD=20;SC=AGGTCGGTGGTACATTCATGC;SbPval=1.0;Source=Platypus;TC=652;TCF=147;TCR=505;TR=222;WE=139997759;WS=139997736;set=Platypus	GT:AD:AF:DP	1/0:430,222:0.34:652
chr9	139997830	.	ATT	A	2947	.	AC=1;AF=0.500;AN=2;BRF=0.65;FR=0.5000;HP=2;HapScore=1;MGOF=62;MMLQ=24;MQ=49.0;NF=51;NR=156;PP=2947;QD=20;SC=GTGGTGTTACATTCATGCTGT;SbPval=0.83;Source=Platypus;TC=624;TCF=190;TCR=434;TR=207;WE=139997843;WS=139997775;set=Platypus	GT:AD:AF:DP	1/0:417,207:0.33:624
chr9	140001341	rs5901117	G	GAAC	2358.73	.	AC=2;AF=1.00;AN=2;DB;DP=59;MQ=60.18;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr9	140001978	rs12115325	C	A	9079.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr9	140002187	rs12000517	C	T	4556.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:2,166:0.99:168
chr9	140002220	rs10117795	A	G	4029.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:1,141:0.99:142
chr9	140002261	rs11790092	A	G	3497.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr9	140002501	rs6420280	T	C	374.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr9	140002754	rs4880090	C	T	270.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr9	140002989	rs4880091	T	C	12834.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.66;SOR=0.869;set=HC	GT:AD:AF:DP	1/1:0,294:1.00:294
chr9	140002995	rs118117962	C	T	12751.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.59;SOR=0.858;set=HC	GT:AD:AF:DP	1/1:0,286:1.00:286
chr9	140003529	rs71803786	G	GC	1860.73	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr9	140006425	rs10747048	C	G	6703.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr9	140006491	rs10870180	C	T	7129.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:1,264:1.00:265
chr9	140008564	.	G	A	454.77	.	AC=1;AF=0.500;AN=2;DP=25;set=Intersection	GT:AD:AF:DP	0/1:4,18:0.82:22
chr9	140008625	.	CCCCCGCCCGCGACCCCGCCCGGCACCCACGTGCCCCGCGA	C	1536.73	.	AC=2;AF=1.00;AN=2;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr9	140008750	rs10747049	G	C	4770.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr9	140008934	rs11145999	A	G	1940.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr9	140040156	rs10870196	G	A	4503.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr9	140051041	rs28687864	A	G	667.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr9	140051238	rs6293	A	G	6103.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:1,231:1.00:232
chr9	140051376	rs1126442	G	A	11574.77	.	AC=2;AF=1.00;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	1/1:0,427:1.00:427
chr9	140055703	rs41290007	G	A	7849.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:2,280:0.99:282
chr9	140055876	rs10747050	G	A	6190.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.12;SOR=0.946;set=HC	GT:AD:AF:DP	1/1:0,237:1.00:237
chr9	140064315	rs7019671	C	A	2238.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:1,90:0.99:91
chr9	140074578	rs55642373	C	T	2702.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr9	140075181	rs73571568	G	C	1410.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr9	140076358	rs28369482	G	A	1834.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr9	140077639	rs11549105	G	A	5923.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:2,230:0.99:232
chr9	140077729	rs28490558	G	A	4300.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:1,165:0.99:166
chr9	140079522	rs11549106	G	A	7693.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:2,290:0.99:292
chr9	140080499	rs3922734	A	G	419.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr9	140080583	rs3922735	G	A	1650.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr9	140083071	rs139478852	C	T	3799.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:2,130:0.98:132
chr9	140083320	rs11556579	G	C	1314.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr9	140084376	rs11556580	G	A	4765.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr9	140084485	rs3087779	G	A	1181.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr9	140094605	rs9411313	C	A	463.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.76;SOR=1.493;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr9	140100224	rs7032361	A	G	5363.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr9	140100317	rs113809617	C	G	3275.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr9	140108915	rs149701237	CTG	C	5598.73	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:1,131:0.99:132
chr9	140110274	rs7390663	T	C	7113.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:2,248:0.99:250
chr9	140120396	rs6606566	C	T	3793.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.942;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=3.903;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=27.10;ReadPosRankSum=-0.718;SOR=0.884;set=HC	GT:AD:AF:DP	1/1:1,139:0.99:140
chr9	140130606	rs28542318	A	T	6491.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr9	140130882	rs28591989	A	C	5914.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:3,232:0.99:235
chr9	140139757	rs9775264	G	A	3020.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr9	140142299	rs9330201	C	T	2464.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr9	140147094	rs71387813	C	CCT	7888.73	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr9	140147152	rs28376526	C	G	7615.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:2,290:0.99:292
chr9	140148051	rs28631372	A	G	2446.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:1,80:0.99:81
chr9	140157429	rs13294457	G	A	2331.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr9	140157460	rs13296455	T	C	3564.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr9	140157701	rs56368095	C	T	3333.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr9	140158650	rs9695897	C	T	3010.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr9	140158871	rs13295537	T	C	663.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr9	140161334	rs9330192	C	T	627.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr9	140161631	.	TGTGGGGCTGAGGTGGGGCTGAG	T	2990	.	AC=2;AF=1.00;AN=2;HP=3;HapScore=1;MMLQ=24;MQ=60.0;NF=4;NR=19;QD=20;SC=CAGGGGTCGGTGTGGGGCTGA;Source=Platypus;TR=23;WS=140161621;set=Platypus	GT:AD:AF:DP	1/1:7,23:0.77:30
chr9	140161634	.	GGGGCT	G	2806.73	.	AC=2;AF=1.00;AN=2;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.53;SOR=0.754;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr9	140161641	.	AGGTGGGGCTGAGGTGGG	A	2807.73	.	AC=2;AF=1.00;AN=2;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.54;SOR=0.754;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr9	140161658	.	G	A	946	.	AC=2;AF=1.00;AN=2;BRF=0.41;FR=1.0000;HP=3;HapScore=1;MGOF=2;MMLQ=22;MQ=60.0;NF=20;NR=19;PP=946;QD=25.1479798089;SC=GCTGAGGTGGGGCTGAGGTGG;SbPval=0.34;Source=Platypus;TC=47;TCF=21;TCR=26;TR=39;WE=140161666;WS=140161621;set=Platypus	GT:AD:AF:DP	1/1:8,39:0.83:47
chr9	140161871	rs9802270	C	T	1051.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr9	140161909	rs9802698	G	T	588.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr9	140167022	rs3204123	G	A	3305.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr9	140202194	rs13288421	T	C	2398.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr9	140218025	.	C	T	773	.	AC=2;AF=1.00;AN=2;BRF=0.41;FR=1.0000;HP=2;HapScore=1;MGOF=42;MMLQ=24;MQ=57.15;NF=32;NR=4;PP=773;QD=22.4380892374;SC=GAGGGATGCTCTGCCGACACC;SbPval=0.63;Source=Platypus;TC=41;TCF=36;TCR=5;TR=36;WE=140218033;WS=140218015;set=Platypus	GT:AD:AF:DP	1/1:5,36:0.88:41
chr9	140218025	.	C	CTGCCGACACCTCACCCCGGACCACGAGGGATGCTT	1662.73	.	AC=2;AF=1.00;AN=2;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.99;QD=118.77;SOR=5.421;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr9	140242726	rs58941960	C	T	2749.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr9	140243968	rs79140116	C	T	3025.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr9	140246050	rs11534416	T	G	2833.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr9	140247143	rs7020732	T	G	2680.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr9	140249253	rs11537108	A	C	1316.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr9	140250818	rs7389423	C	T	3367.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr9	140262218	rs11533157	T	C	1098.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr9	140262424	rs11507683	C	T	5247.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr9	140268183	rs6606585	T	C	1640.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr9	140320792	rs72765154	G	C	5408.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;MQ=60.05;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr9	140322404	rs28580293	C	G	701.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr9	140322640	rs28553346	C	T	299.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr9	140323251	rs11535664	C	T	248.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr9	140323906	rs9697151	G	C	2045.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr9	140328077	rs35138580	C	T	4307.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:1,157:0.99:158
chr9	140329265	rs28725243	G	C	2040.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr9	140330976	rs13297080	T	C	2906.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr9	140331833	rs9414731	A	G	965.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr9	140332478	rs6606582	A	G	14245.77	.	AC=2;AF=1.00;AN=2;DB;DP=557;set=Intersection	GT:AD:AF:DP	1/1:0,553:1.00:553
chr9	140344328	rs28699612	G	A	5939.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr9	140344363	.	G	T	6904.77	.	AC=2;AF=1.00;AN=2;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr9	140349874	rs28585539	C	G	4207.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:1,142:0.99:143
chr9	140356374	rs4962240	C	A	2220.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr9	140357848	rs2275781	G	C	3653.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr9	140357972	rs1891627	A	G	6187.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr9	140373575	rs61747535	C	G	1683.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr9	140374861	rs1891630	A	G	3809.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr9	140392616	rs61754920	G	A	10959.77	.	AC=2;AF=1.00;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	1/1:2,417:1.00:419
chr9	140395103	rs71510827	G	T	1887.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr9	140400275	rs3750381	T	C	3679.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr9	140409726	rs843967	T	C	869.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr9	140414410	rs11137410	C	T	6028.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr9	140416025	rs2298172	A	G	4393.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr9	140441177	rs2254149	A	G	755.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr9	140441206	rs1615822	A	G	1178.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr9	140483076	rs2259657	G	A	1707.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr9	140637804	rs34385417	CT	C	234.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.394;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=1.218;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.91;ReadPosRankSum=1.468;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:31,29:0.48:60
chr9	140705796	rs11789631	G	A	579.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr9	140706127	rs11789684	G	A	2844.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr9	140708768	rs7851955	T	G	5985.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr9	140732819	rs34999753	ACT	A	11985.73	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr9	140740856	.	A	C	336	.	AC=2;AF=1.00;AN=2;BRF=0.69;FR=1.0000;HP=4;HapScore=2;MGOF=59;MMLQ=24;MQ=44.85;NF=10;NR=4;PP=336;QD=26.4836580391;SC=CTGTGCGCGCACCCACTGGAG;SbPval=0.73;Source=Platypus;TC=15;TCF=10;TCR=5;TR=14;WE=140740864;WS=140740846;set=Platypus	GT:AD:AF:DP	1/1:1,14:0.93:15
chr9	140740886	.	A	T	601	.	AC=2;AF=1.00;AN=2;BRF=0.54;FR=1.0000;HP=1;HapScore=1;MGOF=12;MMLQ=23;MQ=55.23;NF=16;NR=11;PP=601;QD=23.5470819462;SC=TCCCCCAGGAATCCTCCTAAG;SbPval=0.64;Source=Platypus;TC=28;TCF=16;TCR=12;TR=27;WE=140740894;WS=140740876;set=Platypus	GT:AD:AF:DP	1/1:1,27:0.96:28
chr9	140777299	rs71238527	G	T	7731.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.309;ClippingRankSum=0.000;DB;DP=782;ExcessHet=3.0103;FS=4.196;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.07;ReadPosRankSum=-0.971;SOR=1.030;set=HC	GT:AD:AF:DP	0/1:414,354:0.46:768
chr9	140777306	rs4422842	C	G	17798.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.338;ClippingRankSum=0.000;DB;DP=727;ExcessHet=3.0103;FS=4.792;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.96;ReadPosRankSum=0.153;SOR=1.088;set=HC	GT:AD:AF:DP	0/1:203,510:0.72:713
chr9	140777370	rs1110146	A	C	5388.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:85,237:0.74:322
chr9	140865989	rs2229951	A	T	4003.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:1,142:0.99:143
chr9	140968696	.	C	CT	54.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.571;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;FS=1.708;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.89;ReadPosRankSum=-0.992;SOR=0.358;set=HC	GT:AD:AF:DP	0/1:20,9:0.31:29
chr9	141008876	rs2229948	C	T	4288.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr9	141015869	.	CTTT	C	47.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.260;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.40;ReadPosRankSum=1.601;SOR=0.519;set=HC	GT:AD:AF:DP	0/1:25,9:0.26:34
chr9	141016262	rs2278973	T	G	6757.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr9	141069844	rs62581042	T	C	692.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.385;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.822;MLEAC=1;MLEAF=0.500;MQ=52.32;MQRankSum=1.422;QD=7.87;ReadPosRankSum=-1.979;SOR=0.882;set=HC	GT:AD:AF:DP	0/1:51,37:0.42:88
chr9	141069952	rs9410185	T	C	6191.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.455;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=4.935;MLEAC=2;MLEAF=1.000;MQ=57.72;MQRankSum=-0.609;QD=35.38;ReadPosRankSum=-0.383;SOR=0.231;set=HC	GT:AD:AF:DP	1/1:10,165:0.94:175
chr9	141069977	.	G	GAGA	1009.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.742;ClippingRankSum=0.000;DP=157;ExcessHet=3.0103;FS=0.874;MLEAC=1;MLEAF=0.500;MQ=57.93;MQRankSum=1.361;QD=10.98;ReadPosRankSum=1.372;SOR=0.561;set=HC	GT:AD:AF:DP	0/1:59,33:0.36:92
chr9	141069978	.	C	CCCCCGTCCTTCTCCCACCCAACGTGTACCACCACGAGGCCAGCGGTGA	1011.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.041;ClippingRankSum=0.000;DP=148;ExcessHet=3.0103;FS=0.884;MLEAC=1;MLEAF=0.500;MQ=57.80;MQRankSum=1.459;QD=11.37;ReadPosRankSum=-3.002;SOR=0.556;set=HC	GT:AD:AF:DP	0/1:56,33:0.37:89
chr9	141069993	rs200245769	C	T	832.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.890;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.10;MQRankSum=-1.418;QD=12.25;ReadPosRankSum=-1.357;SOR=0.460;set=HC	GT:AD:AF:DP	0/1:45,23:0.34:68
chr9	141070013	.	C	CGCG	555.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.229;ClippingRankSum=0.000;DP=64;ExcessHet=3.0103;FS=6.701;MLEAC=1;MLEAF=0.500;MQ=54.26;MQRankSum=-0.203;QD=9.75;ReadPosRankSum=-1.533;SOR=1.831;set=HC	GT:AD:AF:DP	0/1:38,19:0.33:57
chr9	141070159	.	C	T	629.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.222;ClippingRankSum=0.000;DP=90;ExcessHet=3.0103;FS=10.283;MLEAC=1;MLEAF=0.500;MQ=54.22;MQRankSum=-7.231;QD=7.00;ReadPosRankSum=-4.121;SOR=2.173;set=HC	GT:AD:AF:DP	0/1:73,17:0.19:90
chr9	141070161	.	T	C	717.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.970;ClippingRankSum=0.000;DP=94;ExcessHet=3.0103;FS=11.409;MLEAC=1;MLEAF=0.500;MQ=54.48;MQRankSum=-6.050;QD=7.64;ReadPosRankSum=-4.603;SOR=2.101;set=HC	GT:AD:AF:DP	0/1:73,21:0.22:94
chr9	141070163	.	G	C	717.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.298;ClippingRankSum=0.000;DP=97;ExcessHet=3.0103;FS=15.593;MLEAC=1;MLEAF=0.500;MQ=54.66;MQRankSum=-5.347;QD=7.40;ReadPosRankSum=-4.827;SOR=2.377;set=HC	GT:AD:AF:DP	0/1:73,24:0.25:97
chr9	141070181	.	A	T	1300.77	.	AC=1;AF=0.500;AN=2;DP=168;set=Intersection	GT:AD:AF:DP	0/1:97,63:0.39:160
chr9	141070213	rs184986292	A	G	316.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.982;ClippingRankSum=0.000;DB;DP=306;ExcessHet=3.0103;FS=4.800;MLEAC=1;MLEAF=0.500;MQ=54.86;MQRankSum=2.008;QD=1.08;ReadPosRankSum=-1.452;SOR=1.070;set=HC	GT:AD:AF:DP	0/1:246,46:0.16:292
chr9	141070283	rs7868693	T	C	1983.77	.	AC=1;AF=0.500;AN=2;DB;DP=476;set=Intersection	GT:AD:AF:DP	0/1:340,128:0.27:468
chr9	141070317	rs181436611	A	G	782.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.196;ClippingRankSum=0.000;DB;DP=377;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.05;MQRankSum=6.815;QD=2.13;ReadPosRankSum=-2.023;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:292,75:0.20:367
chr9	141070335	rs7868705	T	G	11669.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr9	141070347	rs189844666	C	T	2488.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:111,117:0.51:228
chr9	141070404	.	C	T	216.77	.	AC=1;AF=0.500;AN=2;DP=63;set=Intersection	GT:AD:AF:DP	0/1:47,15:0.24:62
chr9	141070424	.	C	T	136.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.338;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.85;MQRankSum=-3.677;QD=3.51;ReadPosRankSum=0.063;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:32,7:0.18:39
chr9	141071755	rs2507130	T	G	84.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.024;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=1.641;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.42;ReadPosRankSum=-0.911;SOR=0.317;set=HC	GT:AD:AF:DP	0/1:27,8:0.23:35
chr10	95074	rs6560828	G	A	1627.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr10	95226	rs6560829	A	T	5229.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.22;SOR=0.968;set=HC	GT:AD:AF:DP	1/1:0,121:1.00:121
chr10	95229	rs6560830	C	T	5155.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.03;SOR=1.015;set=HC	GT:AD:AF:DP	1/1:0,112:1.00:112
chr10	282897	rs4600135	C	T	7095.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr10	285200	rs7919436	T	G	1060.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:35,39:0.53:74
chr10	285479	rs10655220	G	GTGT,GTGTT	6453.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.216;ClippingRankSum=0.000;DB;DP=317;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=61.65;MQRankSum=0.188;QD=25.81;ReadPosRankSum=0.099;SOR=0.791;set=HC	GT:AD:AF:DP	1/2:3,116,131:0.46,0.52:250
chr10	288184	rs34123561	G	GAA	1089.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.671;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.432;QD=7.22;ReadPosRankSum=-1.722;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:84,67:0.44:151
chr10	292927	rs2303990	C	A	1158.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr10	294165	rs10903752	T	C	679.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:13,25:0.66:38
chr10	294953	rs1017361	A	G	6814.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr10	329182	rs66861796	TG	T	776.73	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:27,34:0.56:61
chr10	329188	rs45445697	G	T	1308.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:38,36:0.49:74
chr10	329191	rs371065533	GC	G	1293.73	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:41,38:0.48:79
chr10	370977	rs3123241	A	G	3038.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr10	375570	rs3832678	GGGAGCTCAGCAAGGCT	G	2976.73	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:95,79:0.45:174
chr10	387060	rs7904155	G	A	2274.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr10	394714	rs4880610	G	A	8793.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,328:1.00:328
chr10	395266	rs4880611	T	C	7716.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr10	395463	rs4242754	G	A	8960.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	1/1:0,330:1.00:330
chr10	410825	rs10795053	G	A	2025.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr10	412449	rs1133113	A	G	2377.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:85,100:0.54:185
chr10	428503	rs4881200	A	G	5783.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr10	429903	rs11289740	GA	G	378.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.775;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.66;MQRankSum=0.000;QD=11.48;ReadPosRankSum=0.718;SOR=2.400;set=HC	GT:AD:AF:DP	1/1:5,28:0.85:33
chr10	435880	rs4881219	G	C	857.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:34,36:0.51:70
chr10	436848	rs10904093	A	G	1945.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:99,92:0.48:191
chr10	444997	rs6560836	C	T	4424.77	.	AC=1;AF=0.500;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	0/1:184,203:0.52:387
chr10	445061	rs6560837	C	T	13911.77	.	AC=2;AF=1.00;AN=2;DB;DP=516;set=Intersection	GT:AD:AF:DP	1/1:0,512:1.00:512
chr10	459793	.	C	T	833.77	.	AC=1;AF=0.500;AN=2;DP=77;set=Intersection	GT:AD:AF:DP	0/1:40,36:0.47:76
chr10	459940	rs4881274	G	A	2854.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:133,137:0.51:270
chr10	461912	rs66682704	TC	T	1645.73	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:39,58:0.60:97
chr10	468748	rs4881290	C	T	519.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr10	518547	rs10610683	ACT	A	6269.73	.	AC=1;AF=0.500;AN=2;DB;DP=359;MQ=60.03;set=Intersection	GT:AD:AF:DP	0/1:184,164:0.47:348
chr10	530644	rs1539231	G	A	1754.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr10	687569	rs1631975	C	T	5020.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr10	696237	rs10904535	G	A	10909.77	.	AC=2;AF=1.00;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	1/1:0,379:1.00:379
chr10	708192	rs3853289	A	G	7079.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr10	1018585	rs4880745	T	G	3682.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:166,166:0.50:332
chr10	1034228	rs12777788	G	A	813.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:17,34:0.67:51
chr10	1034412	rs12772979	C	T	3038.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:178,157:0.47:335
chr10	1038339	.	C	CA	46.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.528;ClippingRankSum=0.000;DP=22;ExcessHet=3.0103;FS=1.922;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.521;QD=2.34;ReadPosRankSum=0.956;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:13,7:0.35:20
chr10	1042023	rs10665098	A	AAAC	13872.73	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,318:1.00:318
chr10	1043058	rs1250887	T	C	3360.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr10	1044809	rs11253559	T	C	3077.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:104,134:0.56:238
chr10	1046480	.	C	CT	202.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.113;ClippingRankSum=0.000;DP=60;ExcessHet=3.0103;FS=6.795;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.62;ReadPosRankSum=1.577;SOR=0.359;set=HC	GT:AD:AF:DP	0/1:37,19:0.34:56
chr10	1046712	rs2306409	G	A	3793.77	.	AC=1;AF=0.500;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	0/1:220,183:0.45:403
chr10	1054276	rs10904595	T	C	2416.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr10	1054444	rs11253567	A	G	4990.77	.	AC=1;AF=0.500;AN=2;DB;DP=530;set=Intersection	GT:AD:AF:DP	0/1:269,254:0.49:523
chr10	1055055	rs12356612	C	T	224.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:18,11:0.38:29
chr10	1061625	.	GCTGAGCA	G	2974	.	AC=2;AF=1.00;AN=2;BRF=0.35;FR=1.0000;HP=2;HapScore=1;MGOF=62;MMLQ=24;MQ=55.68;NF=37;NR=13;PP=2974;QD=20;SC=GGTCCTGAGCGCTGAGCACTG;SbPval=0.6;Source=Platypus;TC=55;TCF=40;TCR=15;TR=50;WE=1061639;WS=1061615;set=Platypus	GT:AD:AF:DP	1/1:5,50:0.91:55
chr10	1065406	rs41260144	G	T	693.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:31,29:0.48:60
chr10	1065458	rs17851563	C	T	1587.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:85,71:0.46:156
chr10	1066935	.	T	G	737.77	.	AC=1;AF=0.500;AN=2;DP=83;set=Intersection	GT:AD:AF:DP	0/1:43,36:0.46:79
chr10	1068802	rs3750729	G	A	1732.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:72,81:0.53:153
chr10	1070461	rs3793777	C	T	684.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:27,27:0.50:54
chr10	1081791	rs146706331	G	GCCTGGCCCA	8458.73	.	AC=1;AF=0.500;AN=2;DB;DP=570;set=Intersection	GT:AD:AF:DP	0/1:235,222:0.49:457
chr10	1081944	rs11396609	G	GT	144.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.820;ClippingRankSum=0.000;DB;DP=393;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.000;QD=0.51;ReadPosRankSum=-0.299;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:236,49:0.17:285
chr10	1087551	rs12768746	T	C	563.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:20,23:0.53:43
chr10	1088746	rs7075188	T	G	956.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:49,44:0.47:93
chr10	1089616	rs11250238	T	C	7510.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr10	1093992	rs4880759	A	G	949.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr10	1142208	rs10794716	T	C	9274.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:0,349:1.00:349
chr10	1262872	rs34113348	AG	A	9553.73	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr10	1279918	rs199758458	T	TCC	945.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.05;QD=36.37;SOR=1.828;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr10	1421516	rs10794748	A	G	4828.77	.	AC=1;AF=0.500;AN=2;DB;DP=489;set=Intersection	GT:AD:AF:DP	0/1:238,238:0.50:476
chr10	1598718	rs10903484	G	A	1706.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:57,74:0.56:131
chr10	1779349	rs3750684	G	A	14622.77	.	AC=2;AF=1.00;AN=2;DB;DP=553;set=Intersection	GT:AD:AF:DP	1/1:0,546:1.00:546
chr10	3124516	rs4881074	G	A	7426.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr10	3143054	.	C	CAAAATAAAAAAAA	571.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.438;ClippingRankSum=0.000;DP=102;ExcessHet=3.0103;FS=1.366;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=-0.827;QD=7.43;ReadPosRankSum=-0.678;SOR=1.101;set=HC	GT:AD:AF:DP	0/1:55,22:0.29:77
chr10	3143283	rs55882340	T	A	421.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:21,19:0.47:40
chr10	3143643	rs4881080	A	C	6502.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr10	3145885	rs10903966	T	C	4463.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr10	3145906	rs11251719	A	C	6130.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr10	3147096	rs4424569	C	G	1107.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.770;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.87;ReadPosRankSum=0.397;SOR=0.883;set=HC	GT:AD:AF:DP	0/1:35,27:0.44:62
chr10	3147099	rs4469783	G	A	1135.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.706;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=1.798;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.23;ReadPosRankSum=-0.721;SOR=0.349;set=HC	GT:AD:AF:DP	0/1:37,33:0.47:70
chr10	3147192	rs4256893	G	A	3985.77	.	AC=1;AF=0.500;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	0/1:180,183:0.50:363
chr10	3147456	rs4271292	C	T	726.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:50,30:0.38:80
chr10	3147501	rs4881081	C	T	1154.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.143;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=5.598;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.79;ReadPosRankSum=1.436;SOR=1.013;set=HC	GT:AD:AF:DP	0/1:23,30:0.57:53
chr10	3147508	rs4881082	C	T	1237.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.097;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=3.698;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.34;ReadPosRankSum=0.274;SOR=0.883;set=HC	GT:AD:AF:DP	0/1:25,33:0.57:58
chr10	3149402	rs10903967	A	G	3023.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:154,151:0.50:305
chr10	3150814	rs17132175	G	C	3116.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:161,148:0.48:309
chr10	3150973	rs1132173	C	T	9101.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:0,335:1.00:335
chr10	3155173	rs7896691	C	T	1514.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:134,73:0.35:207
chr10	3155217	rs6602023	T	C	2718.77	.	AC=1;AF=0.500;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	0/1:218,134:0.38:352
chr10	3155237	rs6602024	A	G	3454.77	.	AC=1;AF=0.500;AN=2;DB;DP=444;set=Intersection	GT:AD:AF:DP	0/1:263,180:0.41:443
chr10	3155263	rs7906901	T	C	4129.77	.	AC=1;AF=0.500;AN=2;DB;DP=544;set=Intersection	GT:AD:AF:DP	0/1:329,211:0.39:540
chr10	3155408	rs3816700	C	T	4499.77	.	AC=1;AF=0.500;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	0/1:237,202:0.46:439
chr10	3155428	rs3816701	C	T	4145.77	.	AC=1;AF=0.500;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	0/1:193,180:0.48:373
chr10	3155540	rs4881085	A	G	6682.77	.	AC=1;AF=0.500;AN=2;DB;DP=602;set=Intersection	GT:AD:AF:DP	0/1:284,318:0.53:602
chr10	3155620	rs1052309	A	G	5941.77	.	AC=1;AF=0.500;AN=2;DB;DP=525;set=Intersection	GT:AD:AF:DP	0/1:243,280:0.54:523
chr10	3155753	rs4881087	G	C	3227.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr10	3158848	rs7086902	C	T	556.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:46,27:0.37:73
chr10	3160917	rs3829913	T	C	1517.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:61,70:0.53:131
chr10	3161131	rs3829914	C	T	2366.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:104,113:0.52:217
chr10	3161216	rs3829916	A	G	886.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:41,37:0.47:78
chr10	3161236	rs17285851	C	A	624.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:25,23:0.48:48
chr10	3161269	rs3829917	G	C	243.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:17,10:0.37:27
chr10	3162033	rs6602025	T	C	3330.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr10	3167463	rs2306309	T	C	4560.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.558;ClippingRankSum=0.000;DB;DP=417;ExcessHet=3.0103;FS=2.421;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=0.930;QD=11.07;ReadPosRankSum=0.000;SOR=0.882;set=HC	GT:AD:AF:DP	0/1:190,222:0.54:412
chr10	3167463	.	TCA	CCG	1863	.	AC=1;AF=0.500;AN=2;BRF=0.53;FR=0.5000;HP=2;HapScore=2;MGOF=8;MMLQ=24;MQ=60.02;NF=51;NR=71;PP=1863;QD=15.7087530726;SC=CCGTTTCCTCTCATTGCTTTT;SbPval=0.63;Source=Platypus;TC=236;TCF=104;TCR=132;TR=122;WE=3167473;WS=3167453;set=Platypus	GT:AD:AF:DP	1/0:114,122:0.52:236
chr10	3167465	rs3816703	A	G	14550.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.700;ClippingRankSum=0.000;DB;DP=404;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.03;MQRankSum=0.106;QD=36.47;ReadPosRankSum=-1.771;SOR=0.838;set=HC	GT:AD:AF:DP	1/1:2,397:0.99:399
chr10	3167527	rs142773253	ATTC	A	2617.73	.	AC=1;AF=0.500;AN=2;DB;DP=164;MQ=60.07;set=Intersection	GT:AD:AF:DP	0/1:67,69:0.51:136
chr10	3171995	rs2279211	G	T	2220.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:82,94:0.53:176
chr10	3172121	rs1052333	C	T	5276.77	.	AC=1;AF=0.500;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	0/1:189,242:0.56:431
chr10	3172229	rs4598574	G	A	4480.77	.	AC=1;AF=0.500;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	0/1:151,208:0.58:359
chr10	3172267	rs4381274	A	G	3102.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:103,140:0.58:243
chr10	3172299	rs4390256	T	C	1846.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:66,87:0.57:153
chr10	3174499	rs3830217	G	GC	1896.73	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:72,66:0.48:138
chr10	3175541	rs3740613	C	A	891.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:75,49:0.40:124
chr10	3178076	rs11251741	A	T	2792.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:124,128:0.51:252
chr10	3178608	rs143435533	C	T	2360.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:126,114:0.47:240
chr10	3178815	rs9063	G	C	1835.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:81,80:0.50:161
chr10	3178881	rs1053000	C	T	636.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:27,27:0.50:54
chr10	3178905	rs7673	T	A	1393.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.56;SOR=2.448;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr10	3178905	.	TGCTCCAGTGC	AGCCCCAGTGC,AGCTCCAGTGT	538	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.35;FR=0.5000,0.5000;HP=2;HapScore=2;MGOF=24;MMLQ=28;MQ=60.0;NF=1,3;NR=11,10;PP=538,465;QD=49.2889895719;SC=CTGCCCCACCTGCTCCAGTGC;SbPval=0.85;Source=Platypus;TC=26;TCF=4;TCR=22;TR=12,13;WE=3178923;WS=3178895;set=Platypus	GT:AF:DP	0/1:0.46:26
chr10	3178908	rs542	T	C	610.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.606;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.70;ReadPosRankSum=-0.673;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:14,17:0.55:31
chr10	3178915	rs541	C	T	463.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.190;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.46;ReadPosRankSum=1.550;SOR=0.430;set=HC	GT:AD:AF:DP	0/1:17,13:0.43:30
chr10	3179663	rs11251744	G	A	2232.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:55,102:0.65:157
chr10	3179703	rs4881107	C	T	3456.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.272;ClippingRankSum=0.000;DB;DP=275;ExcessHet=3.0103;FS=9.099;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.80;ReadPosRankSum=0.074;SOR=1.183;set=HC	GT:AD:AF:DP	0/1:173,97:0.36:270
chr10	3179708	rs4881108	A	G	2012.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.075;ClippingRankSum=0.000;DB;DP=287;ExcessHet=3.0103;FS=6.790;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.14;ReadPosRankSum=0.117;SOR=1.060;set=HC	GT:AD:AF:DP	0/1:184,98:0.35:282
chr10	3179821	rs142646496	C	T	3028.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:173,150:0.46:323
chr10	3179842	rs2306319	C	T	3194.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:147,156:0.51:303
chr10	3180227	rs6901	T	C	3749.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr10	3180316	rs11414	T	C	2571.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:153,126:0.45:279
chr10	3180343	rs2388559	A	G	2756.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:162,135:0.45:297
chr10	3180951	rs2279216	G	A	804.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:35,33:0.49:68
chr10	3181003	rs2279217	A	G	4140.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr10	3181126	rs17849904	C	T	3141.77	.	AC=1;AF=0.500;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	0/1:189,153:0.45:342
chr10	3181282	rs2279220	G	A	8153.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr10	3183747	rs7094698	A	G	8944.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:0,340:1.00:340
chr10	3185393	rs4881110	A	G	1236.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:30,45:0.60:75
chr10	3185798	rs3736093	T	C	9037.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr10	3186458	rs3752803	C	G	5849.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:2,214:0.99:216
chr10	3186723	rs9423496	G	C	818.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr10	3187749	rs3758632	A	G	299.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr10	3187924	rs3758631	T	C	536.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr10	3188071	rs3758630	T	G	111.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr10	3189380	rs3740607	C	T	9106.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:0,342:1.00:342
chr10	3190265	rs4881111	A	G	10929.77	.	AC=2;AF=1.00;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	1/1:0,407:1.00:407
chr10	3190298	rs4881112	C	T	11095.77	.	AC=2;AF=1.00;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	1/1:3,422:0.99:425
chr10	3190499	rs61837966	A	T	1021.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:45,49:0.52:94
chr10	3193557	rs60985673	TAAAAAAGAAACAA	T	2824.73	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:96,77:0.45:173
chr10	3199555	rs7086470	A	T	1543.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr10	3200155	rs9423705	G	C	730.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:31,33:0.52:64
chr10	3200292	rs3182535	G	A	5532.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr10	3201010	rs3814592	C	T	1854.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr10	3201072	rs3814593	G	T	1691.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:81,80:0.50:161
chr10	3201097	rs3814594	T	C	6033.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr10	3202065	rs4242746	T	C	10376.77	.	AC=2;AF=1.00;AN=2;DB;DP=390;MQ=60.11;set=Intersection	GT:AD:AF:DP	1/1:0,388:1.00:388
chr10	3202140	rs4242747	C	T	15047.77	.	AC=2;AF=1.00;AN=2;DB;DP=570;set=Intersection	GT:AD:AF:DP	1/1:2,566:1.00:568
chr10	3202170	rs146529168	C	CG	6856.73	.	AC=1;AF=0.500;AN=2;DB;DP=580;set=Intersection	GT:AD:AF:DP	0/1:322,244:0.43:566
chr10	3205851	rs6602034	C	G	1927.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr10	3206027	rs4609511	A	G	2797.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:2,108:0.98:110
chr10	3207793	rs34243276	T	G	662.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:27,27:0.50:54
chr10	3208557	rs12359035	A	G	2683.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr10	3208567	.	T	TGCACGCTAGGGAAGAGAGAGGAATG	2957	.	AC=2;AF=1.00;AN=2;BRF=0.5;FR=1.0000;HP=1;HapScore=1;MGOF=5;MMLQ=24;MQ=60.12;NF=2;NR=9;PP=2957;QD=20;SC=AGTACGGAACTGCACGCTAGG;SbPval=0.46;Source=Platypus;TC=29;TCF=4;TCR=25;TR=11;WE=3208575;WS=3208547;set=Platypus	GT:AD:AF:DP	1/1:18,11:0.38:29
chr10	3208581	rs58131139	G	GA	882.73	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.17;QD=24.52;SOR=1.209;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr10	3208583	.	A	C	208	.	AC=1;AF=0.500;AN=2;BRF=0.55;FR=0.6026;HP=3;HapScore=2;MGOF=173;MMLQ=24;MQ=59.97;NF=6;NR=15;PP=208;QD=11.5605339308;SC=CTAGGGAAGGAGAATGACCAG;SbPval=0.56;Source=Platypus;TC=21;TCF=6;TCR=15;TR=21;WE=3208591;WS=3208573;set=Platypus	GT:AD:AF:DP	0/1:0,21:1.00:21
chr10	3208583	.	A	AGAGGAATGGCACGCTAGGGAAGGC	927.73	.	AC=2;AF=1.00;AN=2;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.23;QD=23.79;SOR=1.209;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr10	3214369	rs4880599	A	G	3097.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr10	3214516	rs4881118	A	G	5130.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr10	3214942	rs11818724	T	C	4303.77	.	AC=1;AF=0.500;AN=2;DB;DP=465;set=Intersection	GT:AD:AF:DP	0/1:251,212:0.46:463
chr10	3214995	rs34460808	AC	A	21038.73	.	AC=2;AF=1.00;AN=2;DB;DP=672;set=Intersection	GT:AD:AF:DP	1/1:0,646:1.00:646
chr10	3215111	rs9423713	G	C	8822.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr10	4867313	rs2961562	A	T	2681.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr10	4868445	rs2924275	G	T	3952.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr10	4877814	rs150127444	T	TTTTTG	2698.73	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:98,73:0.43:171
chr10	4879465	rs2961584	T	C	774.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr10	4879568	rs41336345	A	C	2009.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:67,90:0.57:157
chr10	4884784	rs2924269	T	C	9678.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr10	4884800	rs2961592	A	G	2582.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:106,117:0.52:223
chr10	4887988	rs2924267	G	A	5242.77	.	AC=1;AF=0.500;AN=2;DB;DP=542;set=Intersection	GT:AD:AF:DP	0/1:286,252:0.47:538
chr10	4889525	rs2961597	T	C	7010.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr10	5005549	rs7069696	G	C	9026.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr10	5008987	rs10562538	GAAGA	G	1707.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr10	5009364	rs2904802	T	C	4028.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr10	5010367	rs12250190	C	T	425.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.69;QD=28.38;SOR=3.126;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr10	5010390	rs200246244	A	G	561.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.11;QD=25.53;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr10	5010572	rs1138600	A	G	856.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.98;QD=27.64;SOR=3.477;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr10	5014545	rs67671072	T	TA	9935.73	.	AC=2;AF=1.00;AN=2;DB;DP=460;set=Intersection	GT:AD:AF:DP	1/1:3,413:0.99:416
chr10	5018132	rs201420087	A	G	107.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=35.76;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr10	5018146	rs199593717	T	A	107.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=35.76;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr10	5032284	rs12774733	C	T	2329.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:167,119:0.42:286
chr10	5037914	rs146951526	G	C	2019.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:143,103:0.42:246
chr10	5041398	rs56259037	T	C	2047.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.422;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=11.327;MLEAC=1;MLEAF=0.500;MQ=39.93;MQRankSum=-0.995;QD=20.08;ReadPosRankSum=-0.567;SOR=1.975;set=HC	GT:AD:AF:DP	0/1:27,75:0.74:102
chr10	5045862	rs67165977	A	G	1337.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.845;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=3.808;MLEAC=1;MLEAF=0.500;MQ=44.30;MQRankSum=-2.066;QD=16.52;ReadPosRankSum=0.979;SOR=1.274;set=HC	GT:AD:AF:DP	0/1:35,46:0.57:81
chr10	5120157	rs4881396	G	T	907.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:96,50:0.34:146
chr10	5120332	rs7894134	T	G	163.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:17,9:0.35:26
chr10	5136651	rs12529	C	G	1674.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:94,79:0.46:173
chr10	5139685	rs12387	G	A	4955.77	.	AC=1;AF=0.500;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	0/1:225,237:0.51:462
chr10	5141137	rs10508293	A	G	1577.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:88,74:0.46:162
chr10	5144523	rs3750566	A	G	559.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:30,27:0.47:57
chr10	5196273	rs1781930	A	G	1021.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:36,43:0.54:79
chr10	5199934	rs1781935	G	C	4357.77	.	AC=1;AF=0.500;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	0/1:229,210:0.48:439
chr10	5200059	rs1761601	T	C	1525.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:88,76:0.46:164
chr10	5200638	rs1781937	G	A	494.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:17,22:0.56:39
chr10	5200739	rs5782810	T	TAGG	2646.73	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:103,70:0.40:173
chr10	5202060	rs1781940	C	T	182.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.795;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=3.030;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.73;ReadPosRankSum=-0.123;SOR=0.320;set=HC	GT:AD:AF:DP	0/1:53,14:0.21:67
chr10	5202241	rs1761599	C	T	2322.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:144,117:0.45:261
chr10	5203748	rs3750573	A	G	1523.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:62,67:0.52:129
chr10	5204676	rs7080497	A	C	196.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:10,8:0.44:18
chr10	5241971	rs61854739	T	G	222.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:39,12:0.24:51
chr10	5242164	rs17306779	A	G	2770.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:199,133:0.40:332
chr10	5242346	rs7099651	G	A	16134.77	.	AC=2;AF=1.00;AN=2;DB;DP=617;set=Intersection	GT:AD:AF:DP	1/1:0,612:1.00:612
chr10	5244441	rs2151896	A	G	988.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:48,48:0.50:96
chr10	5246670	rs1413781	A	C	10537.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	1/1:0,381:1.00:381
chr10	5246753	rs10600924	CACAGAT	C	1114.73	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:50,31:0.38:81
chr10	5247631	rs3750568	G	A	2862.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.005;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=2.480;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.74;ReadPosRankSum=1.357;SOR=0.954;set=HC	GT:AD:AF:DP	0/1:72,73:0.50:145
chr10	5247634	rs3750567	G	A	2878.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.783;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=2.413;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.32;ReadPosRankSum=1.189;SOR=0.942;set=HC	GT:AD:AF:DP	0/1:74,75:0.50:149
chr10	5247701	rs7921838	G	A	3660.77	.	AC=1;AF=0.500;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	0/1:186,175:0.48:361
chr10	5247784	rs3829125	C	G	4996.77	.	AC=1;AF=0.500;AN=2;DB;DP=468;set=Intersection	GT:AD:AF:DP	0/1:234,232:0.50:466
chr10	5254820	rs4098025	AC	CG	4346.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;JOINED;set=Intersection	GT:AD:AF:DP	0/1:105,113:0.52:218
chr10	5254847	rs1832007	A	G	3241.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:123,135:0.52:258
chr10	5255025	rs4880718	A	G	7503.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.69;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,271:1.00:271
chr10	5258955	rs2050309	C	G	718.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr10	5260505	rs5782814	GAA	G	114.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.221;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=11.761;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.47;ReadPosRankSum=-0.431;SOR=4.166;set=HC	GT:AD:AF:DP	0/1:3,7:0.70:10
chr10	5260548	rs141745211	C	CAT	1182.73	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:27,31:0.53:58
chr10	5260682	rs17134592	C	G	2020.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:123,100:0.45:223
chr10	5260786	rs141695403	GTC	G	1472.73	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:37,40:0.52:77
chr10	5260812	rs2398157	A	G	1675.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr10	5415954	rs10904481	A	G	5132.77	.	AC=1;AF=0.500;AN=2;DB;DP=524;set=Intersection	GT:AD:AF:DP	0/1:251,251:0.50:502
chr10	5416202	rs10904482	G	A	623.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:9,26:0.74:35
chr10	5435918	rs7097775	G	A	10343.77	.	AC=2;AF=1.00;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	1/1:0,373:1.00:373
chr10	5436260	rs7910290	A	G	6249.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr10	5436487	rs6601957	A	G	4270.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr10	5437365	rs11253156	A	G	10654.77	.	AC=2;AF=1.00;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	1/1:0,397:1.00:397
chr10	5446632	rs10904491	G	A	2056.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr10	5446794	rs7477466	C	T	6403.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr10	5446942	rs4881435	C	T	1037.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr10	5446965	rs4881436	G	A	749.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr10	5471200	rs4604777	C	T	3224.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr10	5495218	rs4567355	T	C	5325.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr10	5498248	rs4242790	G	T	2240.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr10	5541181	rs10904516	T	C	8507.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.268;ClippingRankSum=0.000;DB;DP=430;ExcessHet=3.0103;FS=2.419;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.88;ReadPosRankSum=1.669;SOR=0.592;set=HC	GT:AD:AF:DP	0/1:209,219:0.51:428
chr10	5541181	.	TTC	CTT	2944	.	AC=1;AF=0.500;AN=2;BRF=0.4;FR=0.5000;HP=1;HapScore=2;MGOF=1;MMLQ=28;MQ=60.0;NF=71;NR=72;PP=2944;QD=20;SC=CCTGGCCTTCTTCGCCGCCGT;SbPval=0.44;Source=Platypus;TC=312;TCF=162;TCR=150;TR=143;WE=5541191;WS=5541171;set=Platypus	GT:AD:AF:DP	1/0:169,143:0.46:312
chr10	5541183	rs10904517	C	T	8507.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.309;ClippingRankSum=0.000;DB;DP=434;ExcessHet=3.0103;FS=1.742;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.69;ReadPosRankSum=1.343;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:209,223:0.52:432
chr10	5558145	rs5782832	G	GC	18335.73	.	AC=2;AF=1.00;AN=2;DB;DP=517;set=Intersection	GT:AD:AF:DP	1/1:1,496:1.00:497
chr10	5558349	rs4072067	G	A	1960.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr10	5567366	rs1142825	G	A	5788.77	.	AC=1;AF=0.500;AN=2;DB;DP=497;set=Intersection	GT:AD:AF:DP	0/1:219,270:0.55:489
chr10	5682641	rs7896492	C	T	3862.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr10	5682855	rs4427479	TG	CC	4876.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr10	5684342	rs6602421	C	G	832.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr10	5684534	rs61006671	T	TA	1574.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.276;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.90;MQRankSum=2.817;QD=17.89;ReadPosRankSum=-0.374;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:39,49:0.56:88
chr10	5684553	rs12268809	A	T	724.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.736;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=3.247;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.069;QD=9.93;ReadPosRankSum=-1.198;SOR=1.188;set=HC	GT:AD:AF:DP	0/1:38,35:0.48:73
chr10	5684616	rs56802263	G	GT	148.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.468;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.75;ReadPosRankSum=0.304;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:6,11:0.65:17
chr10	5693379	rs6602483	A	G	10878.77	.	AC=2;AF=1.00;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	1/1:0,405:1.00:405
chr10	5708311	rs6602610	G	A	1234.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr10	5708420	rs6602613	T	C	4238.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr10	5766337	rs10737018	G	A	249.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:23,14:0.38:37
chr10	5766595	.	T	TATAG	113.73	.	AC=1;AF=0.500;AN=2;DP=11;set=Intersection	GT:AD:AF:DP	0/1:6,4:0.40:10
chr10	5766597	rs139204494	TAG	T	51.73	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:5,3:0.38:8
chr10	5773034	rs45584541	A	G	4627.77	.	AC=1;AF=0.500;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	0/1:198,223:0.53:421
chr10	5781628	rs2254067	T	G	4714.77	.	AC=1;AF=0.500;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	0/1:169,203:0.55:372
chr10	5781969	rs2797486	A	T	4992.77	.	AC=1;AF=0.500;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	0/1:193,222:0.53:415
chr10	5784509	rs2797488	G	A	1492.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:56,65:0.54:121
chr10	5788110	rs200661404	A	AT	176.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.993;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=1.352;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=1.285;QD=3.10;ReadPosRankSum=0.426;SOR=0.416;set=HC	GT:AD:AF:DP	0/1:37,20:0.35:57
chr10	5788608	rs2797491	G	C	7186.77	.	AC=1;AF=0.500;AN=2;DB;DP=691;set=Intersection	GT:AD:AF:DP	0/1:342,326:0.49:668
chr10	5790420	rs2669142	T	C	16828.77	.	AC=2;AF=1.00;AN=2;DB;DP=654;set=Intersection	GT:AD:AF:DP	1/1:1,645:1.00:646
chr10	5804455	rs3736462	A	G	125.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:5,4:0.44:9
chr10	5804474	rs59569509	G	T	135.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.041;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.34;ReadPosRankSum=-0.976;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:6,5:0.45:11
chr10	5804531	rs2797501	G	A	1301.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr10	5804633	rs79988786	T	TTC	1548.73	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:44,43:0.49:87
chr10	5827306	rs117323923	T	G	1593.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:57,75:0.57:132
chr10	5827329	rs147494782	ATCT	A	1614.73	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:52,44:0.46:96
chr10	5837038	rs10752110	T	C	1428.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:68,65:0.49:133
chr10	5853767	rs1567706	T	C	1213.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:49,56:0.53:105
chr10	5853817	rs1567707	G	C	1322.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.794;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.80;ReadPosRankSum=1.590;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:70,65:0.48:135
chr10	5853923	rs146282355	T	TA	177.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.011;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.58;ReadPosRankSum=-0.337;SOR=0.563;set=HC	GT:AD:AF:DP	0/1:48,21:0.30:69
chr10	5904760	rs7923781	T	C	745.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:33,35:0.51:68
chr10	5919947	rs2985043	C	T	2234.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr10	5920121	rs1052420	T	C	13682.77	.	AC=2;AF=1.00;AN=2;DB;DP=531;set=Intersection	GT:AD:AF:DP	1/1:0,525:1.00:525
chr10	5922186	rs811561	T	A	841.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.03;SOR=1.942;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr10	5924942	rs617165	C	G	10815.77	.	AC=2;AF=1.00;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	1/1:0,390:1.00:390
chr10	5925971	rs631947	C	A	12248.77	.	AC=2;AF=1.00;AN=2;DB;DP=455;set=Intersection	GT:AD:AF:DP	1/1:0,447:1.00:447
chr10	5926034	rs3750656	T	C	3811.77	.	AC=1;AF=0.500;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	0/1:190,180:0.49:370
chr10	5926079	rs3750657	AT	CC	4871.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;JOINED;set=Intersection	GT:AD:AF:DP	0/1:130,127:0.49:257
chr10	5926131	rs7919785	G	A	1647.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:72,74:0.51:146
chr10	5926154	rs7907053	A	G	1026.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:47,45:0.49:92
chr10	5929962	rs2296136	G	C	3741.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:151,171:0.53:322
chr10	5931230	rs3750659	C	T	1720.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:81,80:0.50:161
chr10	5932187	rs2253422	C	A	189.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr10	5932367	.	C	G	380.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.125;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.46;ReadPosRankSum=1.130;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:24,21:0.47:45
chr10	5932394	rs191098822	G	T	296.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.823;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=1.281;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.81;ReadPosRankSum=1.513;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:21,17:0.45:38
chr10	5932475	rs10905405	T	C	1008.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr10	5932491	rs10905406	G	A	184.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:17,11:0.39:28
chr10	5937257	rs77543613	G	A	369.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:31,17:0.35:48
chr10	5948657	rs41290311	C	T	707.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:43,32:0.43:75
chr10	5951025	rs595923	T	C	5388.77	.	AC=1;AF=0.500;AN=2;DB;DP=502;set=Intersection	GT:AD:AF:DP	0/1:247,242:0.49:489
chr10	5953148	rs2296138	A	G	1832.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:71,80:0.53:151
chr10	5957301	rs11813102	T	C	1543.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:62,67:0.52:129
chr10	5960499	rs2274027	A	G	1137.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr10	5963174	rs41290317	C	T	2252.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:122,109:0.47:231
chr10	5966190	rs2274029	G	A	571.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.397;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.43;ReadPosRankSum=-0.382;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:22,24:0.52:46
chr10	5966190	.	GCA	ACG	303	.	AC=1;AF=0.500;AN=2;BRF=0.28;FR=0.5000;HP=2;HapScore=2;MGOF=1;MMLQ=24;MQ=60.0;NF=18;NR=1;PP=303;QD=18.761467098;SC=CTGCTCTTGCGCAGCTGCTTA;SbPval=0.82;Source=Platypus;TC=45;TCF=41;TCR=4;TR=19;WE=5966200;WS=5966180;set=Platypus	GT:AD:AF:DP	1/0:26,19:0.42:45
chr10	5966192	rs2274030	A	G	1836.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.32;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr10	5966535	rs59730206	CT	C	449.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.653;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=1.182;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.61;ReadPosRankSum=1.729;SOR=0.504;set=HC	GT:AD:AF:DP	0/1:33,35:0.51:68
chr10	5966806	rs55639163	G	A	577.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:51,32:0.39:83
chr10	5966854	rs11594794	G	A	543.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:51,31:0.38:82
chr10	5967158	rs2669126	C	T	457.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:17,17:0.50:34
chr10	5978411	rs646406	T	C	4434.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr10	5990899	rs4367845	C	T	528.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:30,23:0.43:53
chr10	5998285	rs3136627	G	A	2086.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:126,105:0.45:231
chr10	6000409	rs12260233	T	C	309.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:19,15:0.44:34
chr10	6001696	rs3136618	C	T	1646.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:70,79:0.53:149
chr10	6002368	rs2228059	T	G	3531.77	.	AC=1;AF=0.500;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	0/1:176,171:0.49:347
chr10	6005674	rs3136614	G	A	5155.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr10	6042034	rs10795731	C	T	5482.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.950;ClippingRankSum=0.000;DB;DP=217;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.62;ReadPosRankSum=-1.809;SOR=1.195;set=HC	GT:AD:AF:DP	1/1:2,212:0.99:214
chr10	6061277	rs7069976	G	A	2307.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr10	6061781	rs10752175	T	C	11287.77	.	AC=2;AF=1.00;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	1/1:0,409:1.00:409
chr10	6062051	rs9804284	T	A	1315.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr10	6063674	rs942200	T	C	2033.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:142,107:0.43:249
chr10	6066195	rs12358961	T	A	2374.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:101,107:0.51:208
chr10	6066462	rs12722574	G	A	2768.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:81,121:0.60:202
chr10	6067688	rs2025345	A	G	562.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:18,23:0.56:41
chr10	6067969	rs2228150	C	T	1023.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:66,50:0.43:116
chr10	6150828	rs374720400	GCTCTGTC	G	753.73	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:37,22:0.37:59
chr10	6150837	.	C	T	766.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.015;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=4.076;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.45;ReadPosRankSum=0.295;SOR=1.292;set=HC	GT:AD:AF:DP	0/1:35,22:0.39:57
chr10	6150843	.	G	A	756.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.992;ClippingRankSum=0.000;DP=52;ExcessHet=3.0103;FS=4.519;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.55;ReadPosRankSum=0.112;SOR=1.445;set=HC	GT:AD:AF:DP	0/1:31,21:0.40:52
chr10	6150844	.	C	A	759.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.195;ClippingRankSum=0.000;DP=51;ExcessHet=3.0103;FS=2.857;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.90;ReadPosRankSum=-0.029;SOR=1.302;set=HC	GT:AD:AF:DP	0/1:30,21:0.41:51
chr10	6150845	.	C	T	759.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.361;ClippingRankSum=0.000;DP=51;ExcessHet=3.0103;FS=2.857;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.90;ReadPosRankSum=0.067;SOR=1.302;set=HC	GT:AD:AF:DP	0/1:30,21:0.41:51
chr10	6150848	rs75593307	ACCTG	A	753.73	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:27,17:0.39:44
chr10	6152220	rs41295353	C	G	2030.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:62,88:0.59:150
chr10	6156118	rs10795823	T	C	5852.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr10	6188338	rs7074082	A	G	1468.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:78,70:0.47:148
chr10	6188591	rs7074372	A	G	2905.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr10	6245317	rs6602514	G	T	2061.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:107,101:0.49:208
chr10	6258015	rs2148293	T	C	6630.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.84;SOR=1.742;set=HC	GT:AD:AF:DP	1/1:0,185:1.00:185
chr10	6258015	.	TG	CA,CG	1406	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.31;FR=0.5000,0.5000;HP=2;HapScore=2;MGOF=12;MMLQ=24;MQ=60.0;NF=51,117;NR=15,45;PP=938,1406;QD=15.0222405282;SC=TGTCGGGGCGTGTCGGGAGTT;SbPval=0.8;Source=Platypus;TC=165;TCF=118;TCR=47;TR=66,162;WE=6258024;WS=6258005;set=Platypus	GT:AF:DP	0/1:0.40:165
chr10	6258016	rs35710132	G	A	1603.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.215;ClippingRankSum=0.000;DB;DP=190;ExcessHet=3.0103;FS=4.561;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.49;ReadPosRankSum=0.285;SOR=1.026;set=HC	GT:AD:AF:DP	0/1:107,82:0.43:189
chr10	6258052	rs2148294	G	A	3983.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:132,175:0.57:307
chr10	6258300	rs2516622	A	C	2501.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:1,61:0.98:62
chr10	6258311	rs2516623	T	C	2261.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:1,48:0.98:49
chr10	6258492	rs147522693	C	CG	1145.73	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:58,44:0.43:102
chr10	6258796	rs2182412	T	C	6146.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;MQ=60.05;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr10	6258840	rs5782881	GC	G	3486.73	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr10	6258937	rs2765827	A	G	3782.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr10	6259239	rs2516624	G	A	3831.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr10	6261704	rs1557111	T	C	745.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:31,28:0.47:59
chr10	6266956	rs4747951	G	T	501.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:13,22:0.63:35
chr10	6368707	rs7087657	C	T	648.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.519;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=3.260;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.77;ReadPosRankSum=0.919;SOR=1.110;set=HC	GT:AD:AF:DP	0/1:41,33:0.45:74
chr10	6368721	rs7074209	G	T	1991.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.30;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr10	6368724	rs7074211	G	T	1962.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.62;SOR=1.559;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr10	6368760	rs7087682	C	T	163.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:7,7:0.50:14
chr10	6392848	rs744254	G	A	2422.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr10	6472891	rs11258747	G	T	4429.77	.	AC=1;AF=0.500;AN=2;DB;DP=480;set=Intersection	GT:AD:AF:DP	0/1:263,211:0.45:474
chr10	6472962	rs601150	T	G	5134.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr10	6498723	rs11258943	G	A	2288.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:128,110:0.46:238
chr10	6498799	rs2296123	C	G	1298.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:75,62:0.45:137
chr10	6504126	rs604663	T	C	2786.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.879;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.10;ReadPosRankSum=1.720;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:80,74:0.48:154
chr10	6504136	rs678304	C	G	2942.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.384;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=1.304;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.31;ReadPosRankSum=0.955;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:88,82:0.48:170
chr10	6527344	rs661891	A	C	622.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:20,24:0.55:44
chr10	6531513	rs7910501	G	A	530.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:29,24:0.45:53
chr10	6531552	rs4750528	A	G	301.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:26,16:0.38:42
chr10	6533877	rs3815975	A	G	1796.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:101,88:0.47:189
chr10	6533900	rs3815974	C	T	1282.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:68,63:0.48:131
chr10	6552852	rs563798	C	T	591.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:25,25:0.50:50
chr10	7230524	rs2462712	G	T	788.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:27,33:0.55:60
chr10	7230824	rs2762607	A	C	1839.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:74,78:0.51:152
chr10	7239386	rs2762604	C	T	2414.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:120,111:0.48:231
chr10	7285632	rs2248474	A	G	7520.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr10	7318724	rs7075434	G	A	464.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:38,22:0.37:60
chr10	7318803	rs7097601	T	C	2033.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:106,96:0.48:202
chr10	7319078	rs4338435	C	G	1479.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.870;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=2.254;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.73;ReadPosRankSum=-1.127;SOR=1.029;set=HC	GT:AD:AF:DP	0/1:37,42:0.53:79
chr10	7319088	rs4611096	A	G	1301.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.717;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=7.216;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.60;ReadPosRankSum=0.545;SOR=1.969;set=HC	GT:AD:AF:DP	0/1:36,34:0.49:70
chr10	7390300	rs1751658	A	G	1362.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:67,66:0.50:133
chr10	7423923	.	C	CA	80.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.236;ClippingRankSum=0.000;DP=132;ExcessHet=3.0103;FS=3.756;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.74;ReadPosRankSum=-1.462;SOR=0.322;set=HC	GT:AD:AF:DP	0/1:88,21:0.19:109
chr10	7423960	rs2254756	T	C	2129.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:2,58:0.97:60
chr10	7423984	rs2254760	G	T	1290.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.51;SOR=2.546;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr10	7605067	rs3824658	C	T	7405.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr10	7605077	rs61199416	TC	T	10267.73	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr10	7605101	rs10795551	A	G	9579.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	1/1:0,343:1.00:343
chr10	7605457	rs10737022	G	A	1468.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr10	7614918	rs11255194	T	C	675.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:27,26:0.49:53
chr10	7614936	rs10737023	T	G	2609.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr10	7615195	rs4747517	C	A	2749.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:135,128:0.49:263
chr10	7618501	rs2275068	A	G	2739.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:171,141:0.45:312
chr10	7618686	rs2275069	T	G	5852.77	.	AC=1;AF=0.500;AN=2;DB;DP=623;set=Intersection	GT:AD:AF:DP	0/1:335,277:0.45:612
chr10	7618993	rs10458802	G	A	3004.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.009;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=2.160;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.02;ReadPosRankSum=0.897;SOR=0.946;set=HC	GT:AD:AF:DP	0/1:79,79:0.50:158
chr10	7618997	rs10458803	G	A	2952.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.966;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=1.402;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.69;ReadPosRankSum=0.529;SOR=0.865;set=HC	GT:AD:AF:DP	0/1:74,76:0.51:150
chr10	7621578	rs11255201	C	A	2109.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:105,84:0.44:189
chr10	7622047	rs12256183	A	G	541.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:29,22:0.43:51
chr10	7622075	rs12262854	G	C	406.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:21,18:0.46:39
chr10	7627746	rs12413114	C	T	1138.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:39,46:0.54:85
chr10	7627791	.	A	AAAAAC	973	.	AC=1;AF=0.500;AN=2;BRF=0.42;FR=0.5000;HP=14;HapScore=2;MGOF=33;MMLQ=23;MQ=60.18;NF=40;NR=33;PP=973;QD=13.3698630137;SC=CTCTTGGCAAAAAAAAAAAAA;SbPval=0.58;Source=Platypus;TC=133;TCF=72;TCR=61;TR=73;WE=7627801;WS=7627778;set=Platypus	GT:AD:AF:DP	0/1:60,73:0.55:133
chr10	7627792	.	A	AAAAC	756.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.453;ClippingRankSum=0.000;DP=165;ExcessHet=3.0103;FS=0.637;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=1.760;QD=4.76;ReadPosRankSum=1.212;SOR=0.806;set=HC	GT:AD:AF:DP	0/1:96,63:0.40:159
chr10	7627804	rs12218509	C	A	4954.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.055;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=1.872;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=1.795;QD=25.15;ReadPosRankSum=-0.494;SOR=0.876;set=HC	GT:AD:AF:DP	0/1:76,121:0.61:197
chr10	7627812	.	A	AG	5413.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.514;ClippingRankSum=0.000;DP=244;ExcessHet=3.0103;FS=5.523;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=1.682;QD=22.65;ReadPosRankSum=0.198;SOR=1.048;set=HC	GT:AD:AF:DP	0/1:98,141:0.59:239
chr10	7629168	rs945149	C	A	1087.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr10	7629203	rs4747526	C	T	451.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:38,22:0.37:60
chr10	7629411	rs4747527	T	G	2489.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.375;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.30;ReadPosRankSum=0.248;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:64,65:0.50:129
chr10	7629417	rs4747528	A	C	2466.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.968;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.89;ReadPosRankSum=-0.329;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:60,64:0.52:124
chr10	7683873	rs41382649	A	T	754.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:62,38:0.38:100
chr10	7684120	rs113650478	C	CT	71.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.750;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.75;ReadPosRankSum=-1.890;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:78,18:0.19:96
chr10	7697504	rs11255267	G	A	3297.77	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:159,158:0.50:317
chr10	7763661	rs7075296	A	G	19475.77	.	AC=2;AF=1.00;AN=2;DB;DP=716;set=Intersection	GT:AD:AF:DP	1/1:0,711:1.00:711
chr10	7769604	rs2277226	A	G	2655.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:129,118:0.48:247
chr10	7773976	rs7098319	A	G	2593.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:147,126:0.46:273
chr10	7774317	rs41290291	T	C	2070.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:92,97:0.51:189
chr10	7776831	rs1926937	C	T	2980.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:119,133:0.53:252
chr10	7785017	rs3736965	T	C	736.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr10	7788495	rs7912419	T	C	4099.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr10	7795911	rs7342066	A	G	13589.77	.	AC=2;AF=1.00;AN=2;DB;DP=530;set=Intersection	GT:AD:AF:DP	1/1:0,529:1.00:529
chr10	7797903	rs138937189	C	CAACT	800.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr10	7798150	rs41290295	C	T	1043.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:62,48:0.44:110
chr10	7804308	rs1980856	C	T	3584.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.73;SOR=1.489;set=HC	GT:AD:AF:DP	1/1:0,95:1.00:95
chr10	7804308	.	CCG	TCA,TCG	593	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.42;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=2;MMLQ=22;MQ=60.0;NF=26,47;NR=15,22;PP=593,397;QD=15.767509143;SC=GCAGTTAATGCCGCCAAGACA;SbPval=0.4;Source=Platypus;TC=70;TCF=47;TCR=23;TR=41,69;WE=7804318;WS=7804298;set=Platypus	GT:AF:DP	0/1:0.59:70
chr10	7804310	rs7907885	G	A	1160.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.698;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.761;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.27;ReadPosRankSum=0.323;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:48,55:0.53:103
chr10	7805801	rs7089115	G	A	428.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:23,20:0.47:43
chr10	7808086	rs3736968	T	C	1060.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:51,55:0.52:106
chr10	7816662	rs45516304	G	A	484.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:20,22:0.52:42
chr10	7820704	rs111726843	A	AAACAAC	2834.73	.	AC=1;AF=0.500;AN=2;DB;DP=152;MQ=59.97;set=Intersection	GT:AD:AF:DP	0/1:67,64:0.49:131
chr10	7820722	rs74846952	A	C	2117.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.511;ClippingRankSum=0.000;DB;DP=222;ExcessHet=3.0103;FS=4.415;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=9.85;ReadPosRankSum=0.871;SOR=0.426;set=HC	GT:AD:AF:DP	0/1:118,97:0.45:215
chr10	7830064	rs2070594	A	T	4961.77	.	AC=1;AF=0.500;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	0/1:206,223:0.52:429
chr10	7830319	rs1475406	G	C	3008.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr10	7838208	rs1244418	A	G	806.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:85,46:0.35:131
chr10	7844195	rs932971	C	T	1018.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:48,46:0.49:94
chr10	7844906	rs1244431	T	G	1382.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:60,62:0.51:122
chr10	7846152	rs914609	T	C	10796.77	.	AC=2;AF=1.00;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	1/1:0,410:1.00:410
chr10	7849054	rs2853759	G	T	662.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:25,32:0.56:57
chr10	7849688	rs4655	T	C	920.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:53,47:0.47:100
chr10	7866268	rs7070208	C	G	16146.77	.	AC=2;AF=1.00;AN=2;DB;DP=596;set=Intersection	GT:AD:AF:DP	1/1:4,581:0.99:585
chr10	7866557	rs1244471	T	C	1844.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:61,75:0.55:136
chr10	7866576	rs1244472	A	T	1071.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:42,52:0.55:94
chr10	8006266	rs41290305	A	G	5168.77	.	AC=1;AF=0.500;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	0/1:217,231:0.52:448
chr10	8006798	rs4747647	A	G	6008.77	.	AC=1;AF=0.500;AN=2;DB;DP=552;set=Intersection	GT:AD:AF:DP	0/1:277,269:0.49:546
chr10	8007559	rs10795583	G	C	2100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.034;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=0.559;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.17;ReadPosRankSum=-0.178;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:96,92:0.49:188
chr10	8007560	rs1244229	T	C	6673.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.69;SOR=1.392;set=HC	GT:AD:AF:DP	1/1:0,187:1.00:187
chr10	8019124	rs10795584	A	G	1191.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:44,51:0.54:95
chr10	8093034	rs501764	G	T	5089.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:2,178:0.99:180
chr10	8093079	rs12782941	C	T	1387.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.762;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=1.315;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.12;ReadPosRankSum=0.584;SOR=0.810;set=HC	GT:AD:AF:DP	0/1:103,68:0.40:171
chr10	8093185	rs485411	T	C	3834.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr10	8106135	rs34909898	A	G	2135.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:120,102:0.46:222
chr10	8106231	rs59622436	GT	G,GTTTT	341.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=18.99;SOR=1.371;set=HC	GT:AD:AF:DP	1/2:1,10,7:0.56,0.39:18
chr10	8111345	rs35348503	CT	C	107.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.391;ClippingRankSum=0.000;DB;DP=225;ExcessHet=3.0103;FS=1.648;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.50;ReadPosRankSum=0.251;SOR=0.507;set=HC	GT:AD:AF:DP	0/1:169,45:0.21:214
chr10	8111409	rs422628	C	T	5003.77	.	AC=1;AF=0.500;AN=2;DB;DP=518;set=Intersection	GT:AD:AF:DP	0/1:270,237:0.47:507
chr10	8111621	rs406103	C	T	2078.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:98,89:0.48:187
chr10	8115668	rs373223232	TA	T	728.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.412;ClippingRankSum=0.000;DB;DP=316;ExcessHet=3.0103;FS=0.592;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=4.068;QD=2.47;ReadPosRankSum=1.372;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:188,107:0.36:295
chr10	9449563	.	G	C	2962	.	AC=1;AF=0.500;AN=2;FR=0.5000;HP=2;HapScore=1;MGOF=55;MMLQ=24;NF=346;NR=436;PP=2962;QD=20;SC=CGGGGTCCTAGACACAGAGCG;SbPval=0.61;Source=Platypus;TCF=603;TR=782;WE=9449571;WS=9449553;set=Platypus	GT:AD:AF:DP	1/0:524,782:0.60:1306
chr10	9449628	.	A	G	2965	.	AC=2;AF=1.00;AN=2;BRF=0.63;FR=1.0000;HP=3;HapScore=1;MGOF=34;MMLQ=24;MQ=51.68;NF=187;NR=359;PP=2965;QD=20;SC=TGCAGAGCCCATCAGTGGGTT;SbPval=0.51;Source=Platypus;TC=556;TCF=191;TCR=365;TR=546;WE=9449636;WS=9449618;set=Platypus	GT:AD:AF:DP	1/1:10,546:0.98:556
chr10	11047207	rs2773499	C	G	863.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:31,34:0.52:65
chr10	11047218	.	G	GGA	724.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.533;ClippingRankSum=0.000;DP=84;ExcessHet=3.0103;FS=4.656;MLEAC=1;MLEAF=0.500;MQ=60.64;MQRankSum=1.829;QD=10.82;ReadPosRankSum=1.624;SOR=0.273;set=HC	GT:AD:AF:DP	0/1:31,36:0.54:67
chr10	11290997	rs2653522	A	C	2140.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr10	11299413	rs3832665	T	TA	438.73	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:33,17:0.34:50
chr10	11299735	rs2277212	A	T	2149.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:110,95:0.46:205
chr10	11308790	rs72051267	TTC	T	845.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.991;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=1.205;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.081;QD=12.26;ReadPosRankSum=-0.496;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:36,33:0.48:69
chr10	11316813	rs67013685	TAGTG	T	1132.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr10	11316909	rs2244576	G	C	3435.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr10	11316987	rs2244573	G	A	7062.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr10	11330525	rs2277214	G	A	4968.77	.	AC=1;AF=0.500;AN=2;DB;DP=522;set=Intersection	GT:AD:AF:DP	0/1:276,238:0.46:514
chr10	11330548	rs2277215	G	A	4350.77	.	AC=1;AF=0.500;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	0/1:168,191:0.53:359
chr10	11330576	rs2277216	C	T	2856.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:113,123:0.52:236
chr10	11356093	rs5783207	T	TTTTG	3211.73	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr10	11360673	rs2279809	A	G	1915.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:92,86:0.48:178
chr10	11361182	rs11596315	A	T	8669.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.240;ClippingRankSum=0.000;DB;DP=503;ExcessHet=3.0103;FS=1.118;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.37;ReadPosRankSum=-1.186;SOR=0.790;set=HC	GT:AD:AF:DP	0/1:264,235:0.47:499
chr10	11361186	rs11596316	A	G	8580.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.944;ClippingRankSum=0.000;DB;DP=483;ExcessHet=3.0103;FS=0.531;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.88;ReadPosRankSum=-0.530;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:258,222:0.46:480
chr10	11362789	rs35548374	GT	G	3745.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.620;ClippingRankSum=0.000;DB;DP=524;ExcessHet=3.0103;FS=7.969;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.228;QD=8.34;ReadPosRankSum=-1.353;SOR=0.513;set=HC	GT:AD:AF:DP	0/1:119,330:0.73:449
chr10	11367780	rs3832668	CT	C	3639.73	.	AC=1;AF=0.500;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	0/1:211,227:0.52:438
chr10	11505175	rs3740204	A	G	3664.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:163,158:0.49:321
chr10	11532758	rs882206	C	A	1909.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:86,91:0.51:177
chr10	11653512	.	CCGGCG	C	1948.73	.	AC=1;AF=0.500;AN=2;DP=160;set=Intersection	GT:AD:AF:DP	0/1:80,55:0.41:135
chr10	11654040	.	CT	C	143.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.172;ClippingRankSum=0.000;DP=79;ExcessHet=3.0103;FS=5.167;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.48;ReadPosRankSum=1.362;SOR=0.191;set=HC	GT:AD:AF:DP	0/1:36,22:0.38:58
chr10	11784633	rs11558855	C	T	206.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:28,13:0.32:41
chr10	11789290	rs4750089	G	C	1541.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr10	11789382	rs4750090	G	A	6448.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr10	11789405	rs4750091	G	A	8559.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr10	11789511	rs4750092	C	G	7469.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr10	11791741	rs58243400	CCCAGCAAT	C	2914.73	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr10	11797322	.	CAAA	C	1807.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.630;ClippingRankSum=0.000;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.000;QD=11.89;ReadPosRankSum=2.041;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:53,99:0.65:152
chr10	11797436	rs7899215	T	C	25509.77	.	AC=2;AF=1.00;AN=2;DB;DP=949;set=Intersection	GT:AD:AF:DP	1/1:0,945:1.00:945
chr10	11797467	rs7910140	G	A	21775.73	.	AC=2;AF=1.00;AN=2;DB;DP=837;MQ=60.01;set=Intersection	GT:AD:AF:DP	1/1:0,830:1.00:830
chr10	11797619	rs902892	C	G	6900.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr10	11805152	rs61844892	C	T	1082.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:74,54:0.42:128
chr10	11805204	rs72781916	A	C	2049.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:131,101:0.44:232
chr10	11805249	rs61739577	T	C	2863.77	.	AC=1;AF=0.500;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	0/1:183,146:0.44:329
chr10	11805354	rs12258196	A	G	6550.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.435;ClippingRankSum=0.000;DB;DP=348;ExcessHet=3.0103;FS=2.873;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.38;ReadPosRankSum=1.306;SOR=0.562;set=HC	GT:AD:AF:DP	0/1:168,170:0.50:338
chr10	11805357	rs10906011	G	A	6509.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.146;ClippingRankSum=0.000;DB;DP=341;ExcessHet=3.0103;FS=2.924;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.67;ReadPosRankSum=1.801;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:164,167:0.50:331
chr10	12009545	rs72419940	GTT	G	48.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.180;ClippingRankSum=-0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.44;ReadPosRankSum=-1.068;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:6,5:0.45:11
chr10	12021312	rs3740023	G	A	1187.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr10	12068542	rs12415637	C	T	13036.77	.	AC=2;AF=1.00;AN=2;DB;DP=496;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.02;QD=26.88;SOR=1.008;set=HC	GT:AD:AF:DP	1/1:0,485:1.00:485
chr10	12068645	rs74864961	CT	C	493.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.175;ClippingRankSum=0.000;DB;DP=301;ExcessHet=3.0103;FS=1.801;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.94;ReadPosRankSum=-1.105;SOR=0.931;set=HC	GT:AD:AF:DP	0/1:93,75:0.45:168
chr10	12111090	rs1279138	T	C	9254.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:0,351:1.00:351
chr10	12123666	rs10906066	C	T	5470.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr10	12126490	rs11257527	A	T	1896.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr10	12131081	rs3740015	T	G	23864.77	.	AC=2;AF=1.00;AN=2;DB;DP=882;set=Intersection	GT:AD:AF:DP	1/1:0,870:1.00:870
chr10	12140030	rs10906076	C	G	5821.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr10	12143105	rs2062988	C	G	8643.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:0,323:1.00:323
chr10	12148259	rs1701472	A	C	8022.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr10	12148286	rs1615510	T	C	7925.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:1,303:1.00:304
chr10	12149939	rs1722462	C	T	7843.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr10	12159647	rs2399771	A	G	12610.77	.	AC=2;AF=1.00;AN=2;DB;DP=482;set=Intersection	GT:AD:AF:DP	1/1:0,474:1.00:474
chr10	12159844	.	GATCTCCCCTCTCCT	G	1179	.	AC=1;AF=0.500;AN=2;BRF=0.31;FR=0.5000;HP=2;HapScore=1;MGOF=1;MMLQ=27;MQ=60.0;NF=0;NR=43;PP=1179;QD=28.4186046512;SC=AGGTGATGCAGATCTCCCCTC;SbPval=1.0;Source=Platypus;TC=48;TCF=0;TCR=48;TR=43;WE=12159870;WS=12159834;set=Platypus	GT:AD:AF:DP	1/0:5,43:0.90:48
chr10	12159845	rs34396265	ATCTCCCCTCTCC	A	3179.73	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.16;SOR=4.332;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr10	12159859	rs376672314	ATT	A	1169.73	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.32;SOR=4.332;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr10	12159861	.	T	A	1010	.	AC=2;AF=1.00;AN=2;BRF=0.31;FR=0.5000;HP=4;HapScore=1;MGOF=2;MMLQ=28;MQ=60.0;NF=0;NR=26;PP=1010;QD=40.1835081749;SC=CCTCTCCTATTTTTATTTATT;SbPval=1.0;Source=Platypus;TC=46;TCF=2;TCR=44;TR=26;WE=12159870;WS=12159834;set=Platypus	GT:AD:AF:DP	1/1:20,26:0.57:46
chr10	12160602	rs11257543	T	C	2625.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.98;QD=45.27;SOR=3.500;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr10	12160606	rs11257544	T	C	2543.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.98;QD=43.86;SOR=4.066;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr10	12160623	rs11257545	C	T	2594.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:1,89:0.99:90
chr10	12171740	rs11257552	G	A	3227.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr10	12172775	rs7070684	G	A	2152.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr10	12197259	rs10906089	A	G	608.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr10	12203197	rs2399784	C	G	1271.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr10	12212186	rs11257577	T	A	9266.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	1/1:2,334:0.99:336
chr10	12215870	rs35088067	CT	C	802.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.703;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=3.680;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=0.533;QD=11.47;ReadPosRankSum=0.476;SOR=1.550;set=HC	GT:AD:AF:DP	0/1:11,59:0.84:70
chr10	12227067	rs2140660	C	G	1441.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr10	12228459	rs11257584	T	C	1561.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr10	12252217	rs2271804	G	A	1791.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr10	12288302	rs36042706	A	G	10464.77	.	AC=2;AF=1.00;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	1/1:0,383:1.00:383
chr10	12292286	rs12779647	C	G	8277.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr10	12292344	rs10951	A	G	9678.77	.	AC=2;AF=1.00;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	1/1:3,363:0.99:366
chr10	12292454	rs1051055	A	G	4116.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr10	12595037	rs2815629	G	C	1291.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr10	12595147	rs2895524	C	T	1668.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.066;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=0.526;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.18;ReadPosRankSum=-0.701;SOR=0.761;set=HC	GT:AD:AF:DP	0/1:119,85:0.42:204
chr10	12595443	rs1077744	C	T	143.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:12,7:0.37:19
chr10	12695177	rs7896283	A	G	1593.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:99,75:0.43:174
chr10	12833003	rs10717134	TA	T	2969.73	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:15,165:0.92:180
chr10	12856057	rs10795984	G	A	1475.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:80,63:0.44:143
chr10	12866356	rs2482023	A	C	388.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:15,15:0.50:30
chr10	12867598	rs1757051	C	G	3975.77	.	AC=1;AF=0.500;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	0/1:208,192:0.48:400
chr10	12870642	rs55888132	G	GA	289.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.338;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=8.080;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=0.972;QD=8.28;ReadPosRankSum=0.874;SOR=1.194;set=HC	GT:AD:AF:DP	0/1:14,21:0.60:35
chr10	12870714	rs2482075	A	G	1161.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:63,58:0.48:121
chr10	12940377	rs10752280	T	C	1357.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr10	12940455	rs10906249	A	G	4111.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr10	13151224	rs2234968	G	A	3802.77	.	AC=1;AF=0.500;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	0/1:213,206:0.49:419
chr10	13151354	rs10906303	A	G	1234.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:42,50:0.54:92
chr10	13152504	rs34617995	GT	G	1382.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.34;QD=27.65;SOR=3.564;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr10	13152515	rs79529484	T	G	432.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:30,22:0.42:52
chr10	13158262	rs2244380	C	T	3034.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:125,142:0.53:267
chr10	13164332	rs765884	T	C	487.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:23,22:0.49:45
chr10	13164596	rs489040	A	G	1785.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:91,86:0.49:177
chr10	13166076	rs523747	A	G	5549.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:2,207:0.99:209
chr10	13167860	rs676302	G	T	797.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:47,40:0.46:87
chr10	13206233	rs7090944	A	T	5806.77	.	AC=1;AF=0.500;AN=2;DB;DP=631;set=Intersection	GT:AD:AF:DP	0/1:338,289:0.46:627
chr10	13212884	rs2147279	C	T	5808.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr10	13214812	rs6602637	A	G	1360.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr10	13224886	rs3765520	G	T	626.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:22,25:0.53:47
chr10	13225119	rs11258235	G	A	2159.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:102,103:0.50:205
chr10	13230837	rs6602641	A	G	1055.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:46,49:0.52:95
chr10	13230934	rs7904071	C	T	3169.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:157,153:0.49:310
chr10	13231194	rs2296221	A	G	557.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:22,26:0.54:48
chr10	13233471	rs7916762	C	T	1474.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:49,62:0.56:111
chr10	13234356	rs7905784	A	T	3936.77	.	AC=1;AF=0.500;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	0/1:180,184:0.51:364
chr10	13237015	rs10796036	G	A	7581.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr10	13239917	rs35803060	AT	A	341.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.603;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=4.135;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.14;ReadPosRankSum=-0.886;SOR=2.712;set=HC	GT:AD:AF:DP	1/1:2,24:0.92:26
chr10	13264280	rs2281797	C	A	608.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:48,33:0.41:81
chr10	13271513	rs112352250	GA	G	1011.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.060;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=0.669;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.072;QD=4.98;ReadPosRankSum=-1.022;SOR=0.599;set=HC	GT:AD:AF:DP	0/1:102,101:0.50:203
chr10	13275514	rs4750327	A	G	4036.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr10	13275553	rs3829925	T	G	6062.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr10	13275676	rs3829926	T	C	12251.77	.	AC=2;AF=1.00;AN=2;DB;DP=472;set=Intersection	GT:AD:AF:DP	1/1:0,461:1.00:461
chr10	13275691	rs10796042	G	T	13418.77	.	AC=2;AF=1.00;AN=2;DB;DP=496;set=Intersection	GT:AD:AF:DP	1/1:0,482:1.00:482
chr10	13276179	rs942418	A	G	4968.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr10	13320236	rs11133	C	T	707.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:39,31:0.44:70
chr10	13320411	rs825625	A	T	4688.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr10	13325946	rs648173	C	T	2710.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr10	13330291	rs7900830	G	T	325.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:9,14:0.61:23
chr10	13330402	rs473407	T	C	914.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:77,47:0.38:124
chr10	13334058	rs1408364	A	G	649.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr10	13337319	rs654536	A	C	332.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:11,13:0.54:24
chr10	13337330	rs654553	T	C	388.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:11,15:0.58:26
chr10	13337588	rs1747682	G	A	2747.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr10	13340236	rs28938169	G	A	1699.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:74,81:0.52:155
chr10	13341836	rs511959	G	C	759.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr10	13341889	rs732704	C	G	527.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:32,25:0.44:57
chr10	13341900	rs512109	A	G	2105.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr10	13343857	rs200942529	T	TA	213.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.774;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=2.289;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.10;ReadPosRankSum=-0.127;SOR=1.165;set=HC	GT:AD:AF:DP	0/1:48,21:0.30:69
chr10	13344169	rs3758423	G	A	678.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr10	13350590	rs148418925	ATT	A	381.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.104;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=5.441;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.57;ReadPosRankSum=-0.722;SOR=3.383;set=HC	GT:AD:AF:DP	0/1:18,15:0.45:33
chr10	13364143	rs149378948	CT	C	481.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.697;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.45;ReadPosRankSum=-2.540;SOR=0.546;set=HC	GT:AD:AF:DP	0/1:12,39:0.76:51
chr10	13481427	rs12415754	T	A	4898.77	.	AC=1;AF=0.500;AN=2;DB;DP=493;set=Intersection	GT:AD:AF:DP	0/1:256,227:0.47:483
chr10	13483868	rs7902755	C	G	686.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:60,34:0.36:94
chr10	13489148	rs10675399	T	TGCAGA	2308.73	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:56,56:0.50:112
chr10	13489201	rs11408564	A	AT	4222.73	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:127,133:0.51:260
chr10	13489436	.	T	C	454.77	.	AC=1;AF=0.500;AN=2;DP=103;set=Intersection	GT:AD:AF:DP	0/1:71,27:0.28:98
chr10	13494396	rs3832669	TAA	T	793.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:16,24:0.60:40
chr10	13494594	rs2277222	T	C	4515.77	.	AC=1;AF=0.500;AN=2;DB;DP=467;set=Intersection	GT:AD:AF:DP	0/1:240,219:0.48:459
chr10	13534851	rs2251555	A	G	3405.77	.	AC=1;AF=0.500;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	0/1:174,164:0.49:338
chr10	13538928	rs5783327	CA	C,CAAA	1264.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.874;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.06;MQRankSum=0.484;QD=9.37;ReadPosRankSum=-2.782;SOR=0.803;set=HC	GT:AD:AF:DP	1/2:12,69,54:0.51,0.40:135
chr10	13541724	rs113234105	T	TAAAAC	2337.73	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:67,60:0.47:127
chr10	13570569	.	GGCGGCAGCGGCGGCA	G	1790.73	.	AC=2;AF=1.00;AN=2;DP=80;set=Intersection	GT:AD:AF:DP	1/1:2,70:0.97:72
chr10	13570673	rs10906401	A	G	1433.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr10	13633835	rs10906419	A	G	4830.77	.	AC=1;AF=0.500;AN=2;DB;DP=462;set=Intersection	GT:AD:AF:DP	0/1:222,228:0.51:450
chr10	13653490	rs2478121	C	A	320.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:33,16:0.33:49
chr10	13658335	rs2253308	G	A	3440.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:172,159:0.48:331
chr10	13693883	rs11258499	C	T	6110.77	.	AC=1;AF=0.500;AN=2;DB;DP=685;set=Intersection	GT:AD:AF:DP	0/1:375,306:0.45:681
chr10	13702231	rs74123100	C	T	1243.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:54,56:0.51:110
chr10	13702668	rs10796105	T	C	284.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:6,11:0.65:17
chr10	13705298	rs10796108	G	T	1576.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:36,40:0.53:76
chr10	13705307	rs55876188	ACT	A	1643.73	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:42,43:0.51:85
chr10	13717076	rs3814663	C	G	3599.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:156,162:0.51:318
chr10	13735587	rs737376	G	A	2709.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr10	13735603	rs943090	G	C	2918.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr10	13735685	rs200663128	CT	C	714.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.601;ClippingRankSum=0.000;DB;DP=272;ExcessHet=3.0103;FS=0.609;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.93;ReadPosRankSum=2.024;SOR=0.792;set=HC	GT:AD:AF:DP	0/1:144,100:0.41:244
chr10	13743251	rs2296598	A	T	843.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:41,33:0.45:74
chr10	13743646	rs1541005	G	C	1714.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr10	13782110	rs11258567	A	C	1571.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.179;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=3.060;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.09;ReadPosRankSum=1.601;SOR=0.994;set=HC	GT:AD:AF:DP	0/1:101,72:0.42:173
chr10	13782124	rs10906462	A	G	7356.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr10	13782605	rs6602679	G	A	10652.77	.	AC=2;AF=1.00;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	1/1:2,403:1.00:405
chr10	13824797	rs117589779	G	A	1402.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.575;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.24;ReadPosRankSum=2.015;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:68,69:0.50:137
chr10	13838604	rs3740121	A	G	3499.77	.	AC=1;AF=0.500;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	0/1:205,171:0.45:376
chr10	13838659	rs7079138	T	C	2431.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:72,107:0.60:179
chr10	13852967	rs77883999	A	T	3208.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:117,147:0.56:264
chr10	14050161	.	CTG	C	1038.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.205;ClippingRankSum=0.000;DP=174;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.392;QD=33.51;ReadPosRankSum=-1.607;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:5,26:0.84:31
chr10	14372306	rs35432616	G	GA	188.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.435;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=7.235;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.246;QD=3.04;ReadPosRankSum=-0.265;SOR=0.162;set=HC	GT:AD:AF:DP	0/1:42,20:0.32:62
chr10	14425204	rs12780876	T	A	3776.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr10	14478462	rs10906676	A	G	1188.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.28;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr10	14572644	rs7922221	G	A	819.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:31,35:0.53:66
chr10	14938741	.	G	GA	160.73	.	AC=1;AF=0.500;AN=2;DP=21;set=Intersection	GT:AD:AF:DP	0/1:11,10:0.48:21
chr10	14968656	.	CA	C	104.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.315;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.23;ReadPosRankSum=0.310;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:28,19:0.40:47
chr10	14976326	rs374055066	CA	C	164.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.271;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=3.246;MLEAC=1;MLEAF=0.500;MQ=59.76;MQRankSum=0.000;QD=2.01;ReadPosRankSum=0.820;SOR=1.310;set=HC	GT:AD:AF:DP	0/1:53,29:0.35:82
chr10	15008493	rs4750568	A	C	1091.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:59,57:0.49:116
chr10	15014369	rs1935401	C	A	855.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:41,38:0.48:79
chr10	15014418	rs1935400	C	G	2577.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:100,111:0.53:211
chr10	15014440	rs1935399	A	G	3221.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:142,147:0.51:289
chr10	15014698	rs4418687	C	T	1506.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.516;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=1.510;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.15;ReadPosRankSum=0.462;SOR=0.420;set=HC	GT:AD:AF:DP	0/1:43,40:0.48:83
chr10	15014702	rs4295952	A	G	1538.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.687;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=1.704;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.00;ReadPosRankSum=0.276;SOR=0.411;set=HC	GT:AD:AF:DP	0/1:41,40:0.49:81
chr10	15057374	rs2007712	G	A	3623.77	.	AC=1;AF=0.500;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	0/1:194,176:0.48:370
chr10	15106441	rs10906818	A	G	3058.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:166,144:0.46:310
chr10	15121267	rs148135660	C	CTT	77.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.204;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.53;ReadPosRankSum=-1.805;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:13,9:0.41:22
chr10	15154974	rs7072269	A	G	4574.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr10	15296572	rs3824620	A	T	2000.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr10	15317939	rs45568234	G	C	1923.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:204,109:0.35:313
chr10	15413071	rs192904368	G	A	1244.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.564;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=0.718;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.21;ReadPosRankSum=2.729;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:47,64:0.58:111
chr10	15573050	rs1041135	A	G	7117.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr10	15590372	rs9333229	G	T	1178.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr10	15600271	rs2277204	A	G	1116.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:65,52:0.44:117
chr10	15648243	rs2282383	C	T	8500.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,323:1.00:323
chr10	15650401	rs3041592	TAC	T	136.87	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr10	15685983	rs4748191	A	T	3669.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr10	15713507	rs7100228	A	G	6366.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr10	15713541	rs6602051	T	C	9866.77	.	AC=2;AF=1.00;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	1/1:1,365:1.00:366
chr10	15713667	rs7100510	C	G	11351.77	.	AC=2;AF=1.00;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	1/1:1,413:1.00:414
chr10	15729923	rs1954181	C	T	16740.77	.	AC=2;AF=1.00;AN=2;DB;DP=660;set=Intersection	GT:AD:AF:DP	1/1:0,637:1.00:637
chr10	15761482	rs193294851	G	A	1349.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:61,59:0.49:120
chr10	15761527	rs9333070	T	C	5833.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr10	16526840	rs2275731	G	A	2393.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr10	16547058	rs7904014	A	G	13902.77	.	AC=2;AF=1.00;AN=2;DB;DP=512;set=Intersection	GT:AD:AF:DP	1/1:2,503:1.00:505
chr10	16556710	rs7909832	T	C	15263.77	.	AC=2;AF=1.00;AN=2;DB;DP=588;set=Intersection	GT:AD:AF:DP	1/1:0,585:1.00:585
chr10	16562600	rs72772306	G	A	14151.77	.	AC=2;AF=1.00;AN=2;DB;DP=559;set=Intersection	GT:AD:AF:DP	1/1:1,543:1.00:544
chr10	16736977	rs3740173	T	C	4725.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:1,168:0.99:169
chr10	16737165	rs72451149	G	GAA	1418.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.863;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.92;ReadPosRankSum=-0.913;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:37,106:0.74:143
chr10	16737166	rs3837313	G	A	5679.73	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=-1.368;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=3.249;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=37.37;ReadPosRankSum=-0.899;SOR=0.422;set=HC	GT:AD:AF:DP	1/1:2,150:0.99:152
chr10	16737289	rs3740172	A	C	1286.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr10	16878204	rs703062	T	C	3635.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr10	16882518	rs703064	T	C	996.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:45,49:0.52:94
chr10	16918972	rs1801241	A	G	5134.77	.	AC=1;AF=0.500;AN=2;DB;DP=513;set=Intersection	GT:AD:AF:DP	0/1:254,256:0.50:510
chr10	16932490	rs1801238	G	T	3500.77	.	AC=1;AF=0.500;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	0/1:174,166:0.49:340
chr10	16943371	rs2796835	G	C	13322.77	.	AC=2;AF=1.00;AN=2;DB;DP=502;set=Intersection	GT:AD:AF:DP	1/1:0,491:1.00:491
chr10	16946125	rs7088988	T	C	6659.77	.	AC=1;AF=0.500;AN=2;DB;DP=596;set=Intersection	GT:AD:AF:DP	0/1:273,313:0.53:586
chr10	16948177	rs780807	A	G	4627.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr10	16949447	rs780804	A	C	5079.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr10	16949550	rs3740165	T	C	2060.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:109,106:0.49:215
chr10	16967401	rs1276712	C	T	9857.77	.	AC=2;AF=1.00;AN=2;DB;DP=367;MQ=59.96;set=Intersection	GT:AD:AF:DP	1/1:0,361:1.00:361
chr10	16967445	rs1276713	T	G	5359.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr10	16979661	rs1801234	T	C	5131.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr10	16982244	rs2271463	G	T	1566.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr10	16989272	rs61841454	G	A	2852.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:144,136:0.49:280
chr10	16989427	rs2271466	T	C	1825.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:78,76:0.49:154
chr10	16992296	rs61841459	T	C	205.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr10	17024441	rs41289309	G	A	381.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:20,17:0.46:37
chr10	17024503	rs1801231	G	A	898.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:47,42:0.47:89
chr10	17024615	rs1801229	A	T	2360.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:106,117:0.52:223
chr10	17026010	rs2291523	A	C	1816.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr10	17026384	rs3012494	A	G	232.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:5,9:0.64:14
chr10	17032559	rs925522	A	C	1971.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.86;SOR=4.804;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr10	17032559	.	ACA	CCG	2212	.	AC=2;AF=1.00;AN=2;BRF=0.28;FR=1.0000;HP=2;HapScore=1;MGOF=6;MMLQ=24;MQ=60.0;NF=1;NR=40;PP=2212;QD=55.255314021;SC=GGGCAACAGCACATGGAAAAT;SbPval=0.85;Source=Platypus;TC=42;TCF=2;TCR=40;TR=41;WE=17032569;WS=17032549;set=Platypus	GT:AD:AF:DP	1/1:1,41:0.98:42
chr10	17032561	rs925523	A	G	1971.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.86;SOR=6.138;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr10	17065378	.	G	GA	117.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.546;ClippingRankSum=0.000;DP=145;ExcessHet=3.0103;FS=9.156;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.91;ReadPosRankSum=-0.361;SOR=2.795;set=HC	GT:AD:AF:DP	0/1:101,29:0.22:130
chr10	17110474	rs4747297	C	T	596.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:35,27:0.44:62
chr10	17110595	rs10795440	G	A	3001.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:157,155:0.50:312
chr10	17113563	rs1801225	C	T	4108.77	.	AC=1;AF=0.500;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	0/1:245,204:0.45:449
chr10	17141952	rs1033765	C	A	1637.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:1,59:0.98:60
chr10	17146667	rs4748353	C	T	3005.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr10	17147521	rs1801224	G	T	14202.77	.	AC=2;AF=1.00;AN=2;DB;DP=539;set=Intersection	GT:AD:AF:DP	1/1:0,533:1.00:533
chr10	17156151	rs1801222	A	G	1892.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:80,88:0.52:168
chr10	17157630	rs2295813	C	T	6278.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr10	17164760	rs11409967	A	AC	3322.73	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr10	17164772	.	CA	C	146.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.878;ClippingRankSum=0.000;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.51;ReadPosRankSum=0.157;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:67,30:0.31:97
chr10	17171265	rs2281648	G	C	8989.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:0,330:1.00:330
chr10	17194026	rs17139991	A	G	2420.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:136,120:0.47:256
chr10	17195428	rs2273736	G	C	5947.77	.	AC=1;AF=0.500;AN=2;DB;DP=534;set=Intersection	GT:AD:AF:DP	0/1:243,280:0.54:523
chr10	17196670	rs3736820	T	C	4056.77	.	AC=1;AF=0.500;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	0/1:171,190:0.53:361
chr10	17199419	rs2295810	C	G	9097.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;MQ=59.97;set=Intersection	GT:AD:AF:DP	1/1:0,330:1.00:330
chr10	17199778	rs11254408	C	A	615.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:15,25:0.62:40
chr10	17201247	rs17140049	A	G	3230.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:146,162:0.53:308
chr10	17204187	rs11254413	G	A	5334.77	.	AC=1;AF=0.500;AN=2;DB;DP=543;set=Intersection	GT:AD:AF:DP	0/1:268,265:0.50:533
chr10	17204246	rs111781208	TA	T	2978.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.016;ClippingRankSum=0.000;DB;DP=311;ExcessHet=3.0103;FS=3.207;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.52;ReadPosRankSum=1.625;SOR=0.923;set=HC	GT:AD:AF:DP	0/1:39,199:0.84:238
chr10	17204248	rs200006483	A	T	680.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.566;ClippingRankSum=0.000;DB;DP=303;ExcessHet=3.0103;FS=3.751;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.50;ReadPosRankSum=0.820;SOR=0.487;set=HC	GT:AD:AF:DP	0/1:193,79:0.29:272
chr10	17204258	rs11254414	A	C	1775.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.357;ClippingRankSum=0.000;DB;DP=276;ExcessHet=3.0103;FS=10.016;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.99;ReadPosRankSum=2.073;SOR=1.208;set=HC	GT:AD:AF:DP	0/1:138,116:0.46:254
chr10	17210822	rs17464824	A	C	1295.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:48,56:0.54:104
chr10	17210881	rs7096233	A	G	2133.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:112,108:0.49:220
chr10	17216419	rs2273735	T	C	998.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:43,42:0.49:85
chr10	17216556	rs2273734	C	T	4814.77	.	AC=1;AF=0.500;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	0/1:243,232:0.49:475
chr10	17243406	rs1885395	C	G	901.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:50,40:0.44:90
chr10	17243480	rs1885394	T	A	3971.77	.	AC=1;AF=0.500;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	0/1:194,200:0.51:394
chr10	17271400	rs3758410	G	C	1104.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:50,49:0.49:99
chr10	17272903	rs5783538	AT	A	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.040;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=3.948;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.04;ReadPosRankSum=-1.229;SOR=0.207;set=HC	GT:AD:AF:DP	0/1:28,12:0.30:40
chr10	17276066	rs57465155	C	T	628.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:33,26:0.44:59
chr10	17495619	rs45462798	T	A	3736.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:160,178:0.53:338
chr10	17496193	.	CGCA	C	70.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.371;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;FS=1.894;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.81;ReadPosRankSum=0.411;SOR=0.883;set=HC	GT:AD:AF:DP	0/1:34,5:0.13:39
chr10	17636182	rs2272144	G	C	337.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:8,15:0.65:23
chr10	17636309	rs1053926	G	A	1320.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:62,66:0.52:128
chr10	17636512	rs11599234	C	T	180.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr10	17645814	rs2252808	C	T	1574.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:59,73:0.55:132
chr10	17659131	rs11254692	C	A	10655.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr10	17659149	rs7895850	C	T	9672.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr10	17726648	rs11254724	A	G	2852.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:95,116:0.55:211
chr10	17756596	rs12221	T	C	4084.77	.	AC=1;AF=0.500;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	0/1:237,194:0.45:431
chr10	17891705	rs1926736	A	G	19498.77	.	AC=2;AF=1.00;AN=2;DB;DP=727;set=Intersection	GT:AD:AF:DP	1/1:0,722:1.00:722
chr10	17898179	.	CA	C	90.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.718;ClippingRankSum=0.000;DP=22;ExcessHet=3.0103;FS=2.029;MLEAC=1;MLEAF=0.500;MQ=48.25;MQRankSum=-1.346;QD=5.04;ReadPosRankSum=2.264;SOR=1.445;set=HC	GT:AD:AF:DP	0/1:7,11:0.61:18
chr10	18087629	rs199734634	CTG	C	13916.73	.	AC=1;AF=0.500;AN=2;DB;DP=727;set=Intersection	GT:AD:AF:DP	0/1:349,358:0.51:707
chr10	18242304	rs691112	T	C	12097.77	.	AC=2;AF=1.00;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	1/1:0,436:1.00:436
chr10	18250580	rs139865721	T	G	1531.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:56,65:0.54:121
chr10	18276682	rs10508555	G	C	2211.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr10	18280054	.	C	CTTTT	851.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.184;ClippingRankSum=0.000;DP=59;ExcessHet=3.0103;FS=1.378;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.70;ReadPosRankSum=0.463;SOR=1.075;set=HC	GT:AD:AF:DP	0/1:10,41:0.80:51
chr10	18550450	rs951046	G	A	251.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:21,12:0.36:33
chr10	18550887	rs12261375	T	C	2871.77	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:214,148:0.41:362
chr10	18551154	rs10764369	G	A	344.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:14,14:0.50:28
chr10	18691018	rs3750592	G	A	1885.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:87,88:0.50:175
chr10	18789724	rs4485000	T	G	2181.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:97,97:0.50:194
chr10	18795596	rs10741088	G	A	4127.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr10	18816633	rs4314963	C	T	9632.77	.	AC=2;AF=1.00;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	1/1:0,363:1.00:363
chr10	18825172	.	C	CTTTTCT	3411.73	.	AC=2;AF=1.00;AN=2;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.08;SOR=0.937;set=HC	GT:AD:AF:DP	1/1:0,126:1.00:126
chr10	18825202	rs150214686	TGG	T	814.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.93;SOR=2.712;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr10	18825203	.	GG	TT	1084	.	AC=2;AF=1.00;AN=2;BRF=0.42;FR=1.0000;HP=20;HapScore=1;MGOF=22;MMLQ=28;MQ=52.15;NF=0;NR=45;PP=1084;QD=25.2770638858;SC=TTTTTTTTTTGGGGGACAAGG;SbPval=1.0;Source=Platypus;TC=84;TCF=3;TCR=81;TR=45;WE=18825212;WS=18825192;set=Platypus	GT:AD:AF:DP	1/1:39,45:0.54:84
chr10	18828371	rs2228645	C	T	20228.77	.	AC=2;AF=1.00;AN=2;DB;DP=771;set=Intersection	GT:AD:AF:DP	1/1:4,744:0.99:748
chr10	18828663	rs4747352	G	T	5867.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.846;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.13;MQRankSum=0.166;QD=35.56;ReadPosRankSum=-0.735;SOR=0.554;set=HC	GT:AD:AF:DP	1/1:1,164:0.99:165
chr10	18828669	rs141925255	GTT	G,GT	4582.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.414;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.23;MQRankSum=0.272;QD=48.24;ReadPosRankSum=0.508;SOR=0.551;set=HC	GT:AD:AF:DP	1/2:1,68,26:0.72,0.27:95
chr10	18834797	rs372385710	T	TAAAAAAAA	1077.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=59.87;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr10	18836957	rs4747353	C	T	2210.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr10	18840919	rs12767546	T	A	2181.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:2,76:0.97:78
chr10	18875051	.	G	GA	116.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.179;ClippingRankSum=0.000;DP=149;ExcessHet=3.0103;FS=1.069;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.96;ReadPosRankSum=-1.069;SOR=0.459;set=HC	GT:AD:AF:DP	0/1:97,25:0.20:122
chr10	18875109	rs12772522	G	A	2067.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr10	18898701	rs4748493	T	A	938.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr10	18898729	rs34349692	G	GT	1857.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr10	18898960	rs4748494	A	G	3077.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr10	18903281	rs11405681	C	CA	1817.73	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:16,102:0.86:118
chr10	18903605	rs4636555	A	C	1002.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr10	18931512	rs7907153	T	C	1722.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr10	18931580	rs7897159	C	T	1091.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr10	18937579	rs45468894	A	AAAG	3098.73	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr10	18957699	rs34027786	CT	C	448.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.119;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=4.079;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.01;ReadPosRankSum=1.441;SOR=0.188;set=HC	GT:AD:AF:DP	0/1:14,42:0.75:56
chr10	19376734	rs112293611	G	GT	1206.73	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:118,82:0.41:200
chr10	19392857	rs10159517	T	C	1675.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.046;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=0.524;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.38;ReadPosRankSum=-0.088;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:110,90:0.45:200
chr10	19417181	rs11008573	T	C	2738.77	.	AC=1;AF=0.500;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	0/1:197,143:0.42:340
chr10	19492566	rs7902704	A	T	2692.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr10	19492832	rs7476259	A	C	10723.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	1/1:0,381:1.00:381
chr10	19493144	rs10827051	T	C	604.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr10	19493210	rs71387054	G	GTT	232.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.810;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=28.506;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=0.751;QD=6.29;ReadPosRankSum=0.876;SOR=3.508;set=HC	GT:AD:AF:DP	0/1:12,25:0.68:37
chr10	19493415	rs2358348	C	G	2675.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr10	19494316	rs144770813	TTA	T	1407.73	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:27,37:0.58:64
chr10	19498278	rs2358355	G	A	12005.77	.	AC=2;AF=1.00;AN=2;DB;DP=453;set=Intersection	GT:AD:AF:DP	1/1:1,450:1.00:451
chr10	19498722	rs2245136	A	G	846.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr10	19571941	rs2499066	A	G	6960.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:2,268:0.99:270
chr10	19572207	rs4748570	C	T	535.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:30,23:0.43:53
chr10	19616400	rs368517843	TA	T	482.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.312;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=6.998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.80;ReadPosRankSum=1.862;SOR=2.772;set=HC	GT:AD:AF:DP	0/1:32,39:0.55:71
chr10	19616735	rs1577289	T	C	2397.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr10	19620407	rs7100382	A	C	14732.77	.	AC=2;AF=1.00;AN=2;DB;DP=536;set=Intersection	GT:AD:AF:DP	1/1:0,529:1.00:529
chr10	19620439	rs7100403	A	G	12362.77	.	AC=2;AF=1.00;AN=2;DB;DP=467;set=Intersection	GT:AD:AF:DP	1/1:0,464:1.00:464
chr10	19620559	rs7082205	G	A	2328.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr10	19636869	rs1609746	G	T	8371.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr10	19637088	rs1577307	G	A	1851.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr10	19641035	rs10827306	T	C	11474.77	.	AC=2;AF=1.00;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	1/1:0,416:1.00:416
chr10	19641231	rs7092566	A	G	16654.77	.	AC=2;AF=1.00;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	1/1:2,406:1.00:408
chr10	19641239	rs10616221	CTG	C	15525.73	.	AC=2;AF=1.00;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	1/1:2,369:0.99:371
chr10	19678286	rs10763974	C	T	7526.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr10	19678497	rs10763975	G	A	4547.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr10	19678602	rs7896087	T	C	855.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr10	19739459	rs6415957	T	G	2783.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr10	19778056	rs2151234	G	A	17846.77	.	AC=2;AF=1.00;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	1/1:0,431:1.00:431
chr10	19778072	rs2184035	A	G	16276.77	.	AC=2;AF=1.00;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	1/1:0,364:1.00:364
chr10	19884264	rs10827628	G	A	9735.77	.	AC=2;AF=1.00;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	1/1:0,369:1.00:369
chr10	19896830	rs7909976	C	A	5952.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr10	19904870	rs10580913	ATT	A	4533.73	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr10	19904879	rs62881061	T	G	4601.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.01;SOR=1.056;set=HC	GT:AD:AF:DP	1/1:0,107:1.00:107
chr10	20019762	rs144880931	AAC	A	72.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.931;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=3.417;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.83;ReadPosRankSum=1.139;SOR=0.236;set=HC	GT:AD:AF:DP	0/1:76,12:0.14:88
chr10	20105936	rs989767	T	C	3624.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr10	20105996	rs63234960	TGGC	T	13775.73	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr10	20290956	rs1409344	T	A	272.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:19,13:0.41:32
chr10	20336112	rs10740961	G	T	182.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:9,8:0.47:17
chr10	20436838	rs4626974	G	C	3603.77	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:186,174:0.48:360
chr10	20506326	rs12783379	T	C	6752.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr10	20506418	rs3817405	G	A	13558.77	.	AC=2;AF=1.00;AN=2;DB;DP=529;set=Intersection	GT:AD:AF:DP	1/1:0,516:1.00:516
chr10	20507790	rs11011879	A	G	110.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr10	20534333	rs2778979	A	G	2472.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr10	20568524	rs2681949	T	C	2948.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr10	20840874	rs1339657	T	C	566.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:43,29:0.40:72
chr10	20841150	rs2496601	C	T	861.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr10	21076285	rs2697027	C	G	4596.77	.	AC=1;AF=0.500;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	0/1:202,219:0.52:421
chr10	21106496	rs377626798	A	T	4166.77	.	AC=1;AF=0.500;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	0/1:224,202:0.47:426
chr10	21108377	rs1006363	C	T	2090.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:118,105:0.47:223
chr10	21112068	rs41277366	G	T	64.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.275;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.48;ReadPosRankSum=-1.611;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:5,5:0.50:10
chr10	21141469	rs703089	T	C	2137.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr10	21148584	rs4748729	C	A	1282.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.66;SOR=1.157;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr10	21157492	rs2296609	T	C	1807.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr10	21157763	rs5783755	CA	C	435.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.381;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=2.667;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=0.601;QD=10.37;ReadPosRankSum=-0.515;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:8,34:0.81:42
chr10	21169923	rs16921213	T	G	1081.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:38,47:0.55:85
chr10	21176945	rs703100	G	A	2224.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr10	21177156	rs67288319	GA	G	2877.73	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr10	21185821	rs788971	A	C	6128.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr10	21784647	rs143363975	C	A	6580.77	.	AC=1;AF=0.500;AN=2;DB;DP=603;set=Intersection	GT:AD:AF:DP	0/1:289,309:0.52:598
chr10	21806019	.	AGGC	A	67.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.012;ClippingRankSum=0.000;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.97;ReadPosRankSum=-0.081;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:63,7:0.10:70
chr10	21901255	rs369797804	CT	C	213.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.700;ClippingRankSum=0.000;DB;DP=275;ExcessHet=3.0103;FS=0.640;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.80;ReadPosRankSum=0.051;SOR=0.767;set=HC	GT:AD:AF:DP	0/1:208,59:0.22:267
chr10	22193422	rs792455	T	C	481.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:21,23:0.52:44
chr10	22208630	rs2807978	T	C	201.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:12,9:0.43:21
chr10	22497710	rs2479114	C	T	717.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:36,30:0.45:66
chr10	22498209	rs2243897	A	G	5386.77	.	AC=1;AF=0.500;AN=2;DB;DP=484;set=Intersection	GT:AD:AF:DP	0/1:227,250:0.52:477
chr10	22498468	rs838759	C	T	5855.77	.	AC=1;AF=0.500;AN=2;DB;DP=536;set=Intersection	GT:AD:AF:DP	0/1:261,264:0.50:525
chr10	22498484	rs3059425	C	CAGA	9833.73	.	AC=1;AF=0.500;AN=2;DB;DP=553;set=Intersection	GT:AD:AF:DP	0/1:269,253:0.48:522
chr10	22498749	rs2478476	A	T	15402.77	.	AC=2;AF=1.00;AN=2;DB;DP=571;set=Intersection	GT:AD:AF:DP	1/1:0,561:1.00:561
chr10	22635359	.	G	GTTCTTCTTC	470.73	.	AC=2;AF=1.00;AN=2;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.13;QD=33.62;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr10	22826093	rs1053454	A	C	2774.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:97,124:0.56:221
chr10	22828841	rs150482394	GGA	G	1186.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.743;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=7.740;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.73;ReadPosRankSum=3.060;SOR=1.553;set=HC	GT:AD:AF:DP	0/1:89,47:0.35:136
chr10	22830719	rs943192	G	C	15610.77	.	AC=2;AF=1.00;AN=2;DB;DP=574;set=Intersection	GT:AD:AF:DP	1/1:0,568:1.00:568
chr10	22839463	rs10047326	C	A	328.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:14,14:0.50:28
chr10	22839628	rs2230469	T	C	2952.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:159,134:0.46:293
chr10	22856946	rs2296624	C	T	344.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:29,16:0.36:45
chr10	22862487	rs11013052	C	A	1212.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:62,53:0.46:115
chr10	22896779	rs2765997	C	T	4700.77	.	AC=1;AF=0.500;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	0/1:234,221:0.49:455
chr10	23003226	rs1132816	A	G	6298.77	.	AC=1;AF=0.500;AN=2;DB;DP=623;set=Intersection	GT:AD:AF:DP	0/1:307,308:0.50:615
chr10	23220883	rs12360508	T	A	689.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:56,34:0.38:90
chr10	23297301	rs11817610	C	T	2110.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr10	23297336	rs11819616	A	T	1877.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr10	23303253	rs1054052	T	A	2093.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr10	23408139	rs2296468	A	G	4160.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr10	23408278	rs7427	C	T	1946.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:99,97:0.49:196
chr10	23622202	rs4259746	G	A	487.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:20,21:0.51:41
chr10	23632970	rs11013408	T	G	1243.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:83,68:0.45:151
chr10	23633025	rs56317783	C	T	343.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:29,21:0.42:50
chr10	23633566	rs2036917	C	A	1966.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:86,94:0.52:180
chr10	24498289	rs11451939	G	GA	219.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.210;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=1.364;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=0.881;QD=4.99;ReadPosRankSum=-1.440;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:22,22:0.50:44
chr10	24498403	rs72774807	G	A	289.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;MQ=60.57;set=Intersection	GT:AD:AF:DP	0/1:6,13:0.68:19
chr10	24544276	rs67303587	GCTGA	G	1286.73	.	AC=1;AF=0.500;AN=2;DB;DP=67;MQ=60.16;set=Intersection	GT:AD:AF:DP	0/1:31,34:0.52:65
chr10	24564831	rs10764458	C	T	4835.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr10	24564859	rs17583862	A	G	1178.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:50,54:0.52:104
chr10	24669877	rs17506606	C	G	6476.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:1,241:1.00:242
chr10	24721946	rs2274831	A	C	1271.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:80,63:0.44:143
chr10	24722200	rs3215904	G	GT	372.73	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:20,23:0.53:43
chr10	24784014	rs11341951	TA	T	401.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.703;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=6.474;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.888;QD=2.36;ReadPosRankSum=-0.227;SOR=0.292;set=HC	GT:AD:AF:DP	0/1:114,56:0.33:170
chr10	24790393	rs1112284	A	G	2654.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:171,131:0.43:302
chr10	24790491	rs2366916	GC	TT	1053.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.576;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.84;ReadPosRankSum=-0.403;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:59,30:0.34:89
chr10	24810663	rs2297330	C	A	1795.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:90,85:0.49:175
chr10	24813454	rs10828663	G	A	7367.77	.	AC=1;AF=0.500;AN=2;DB;DP=691;set=Intersection	GT:AD:AF:DP	0/1:336,353:0.51:689
chr10	24831505	rs867040	G	C	1066.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:74,49:0.40:123
chr10	24873369	rs1127893	C	G	1751.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:98,80:0.45:178
chr10	24878042	rs9663520	C	A	398.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:26,19:0.42:45
chr10	24878129	rs7478260	G	A	4448.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr10	24879281	rs10734053	A	G	12908.77	.	AC=2;AF=1.00;AN=2;DB;DP=487;set=Intersection	GT:AD:AF:DP	1/1:0,479:1.00:479
chr10	24881085	.	ATTTT	A	128.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.521;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.05;ReadPosRankSum=1.878;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:11,5:0.31:16
chr10	24889901	rs3748221	T	G	3630.77	.	AC=1;AF=0.500;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	0/1:216,179:0.45:395
chr10	25140411	rs1326192	G	C	5527.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.72;SOR=0.805;set=HC	GT:AD:AF:DP	1/1:0,186:1.00:186
chr10	25273311	rs5783912	G	GA	629.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.705;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.42;MQRankSum=2.186;QD=7.00;ReadPosRankSum=-0.148;SOR=0.774;set=HC	GT:AD:AF:DP	0/1:38,52:0.58:90
chr10	25273988	rs2279547	G	A	428.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:29,19:0.40:48
chr10	25312689	rs4748997	A	G	2586.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:140,118:0.46:258
chr10	25313818	rs7086282	C	T	3315.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:133,153:0.53:286
chr10	25465327	rs11014433	G	A	723.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:31,31:0.50:62
chr10	25701341	rs2480345	C	G	5062.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr10	25755732	rs67115852	CACAT	C	536.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.126;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.09;ReadPosRankSum=-0.473;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:20,21:0.51:41
chr10	25755734	.	CAT	C	312.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.151;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.63;ReadPosRankSum=2.318;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:26,15:0.37:41
chr10	25888180	rs10828833	A	G	1541.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.757;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.96;ReadPosRankSum=-0.680;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:91,81:0.47:172
chr10	26286367	rs7911700	G	A	147.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:10,7:0.41:17
chr10	26310410	rs3737275	T	C	4278.77	.	AC=1;AF=0.500;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	0/1:179,204:0.53:383
chr10	26310679	rs17666079	A	C	595.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:40,25:0.38:65
chr10	26312824	rs1339814	G	A	2011.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:107,85:0.44:192
chr10	26355771	rs3824703	C	A	668.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr10	26355862	rs3824702	G	T	8001.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.72;SOR=1.735;set=HC	GT:AD:AF:DP	1/1:0,175:1.00:175
chr10	26355872	rs3824701	A	G	8580.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.27;SOR=1.419;set=HC	GT:AD:AF:DP	1/1:0,203:1.00:203
chr10	26355906	rs3824700	G	A	8317.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,319:1.00:319
chr10	26355992	rs3824699	A	G	8521.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,326:1.00:326
chr10	26356014	rs3824698	CA	TG	10795.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr10	26356037	rs3824696	C	T	5243.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr10	26356066	rs3824695	C	T	3416.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr10	26357625	rs3817421	T	C	2175.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr10	26357747	rs35379457	CG	TA	10875.77	.	AC=2;AF=1.00;AN=2;DB;DP=424;JOINED;set=Intersection	GT:AD:AF:DP	1/1:3,417:0.99:420
chr10	26357820	rs3817419	C	T	9466.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	1/1:3,354:0.99:357
chr10	26359180	rs3758441	T	G	2805.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr10	26359200	rs3834403	T	TA	3523.73	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr10	26385578	rs41279908	G	A	1562.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:70,73:0.51:143
chr10	26417531	rs17739425	T	G	100.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:7,5:0.42:12
chr10	26436287	rs2368158	G	T	1836.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:59,73:0.55:132
chr10	26436298	rs35241240	TGAG	T	2622.73	.	AC=1;AF=0.500;AN=2;DB;DP=168;MQ=60.19;set=Intersection	GT:AD:AF:DP	0/1:92,72:0.44:164
chr10	26443646	rs3818956	G	A	6741.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr10	26446312	rs3758449	G	A	8797.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:0,333:1.00:333
chr10	26457536	rs1342320	C	T	416.94	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:1,15:0.94:16
chr10	26457637	rs16926628	T	C	419.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:38,24:0.39:62
chr10	26462790	rs3740232	G	A	1838.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:151,89:0.37:240
chr10	26463043	rs3740231	A	T	4688.77	.	AC=1;AF=0.500;AN=2;DB;DP=472;set=Intersection	GT:AD:AF:DP	0/1:241,222:0.48:463
chr10	26463130	rs1999240	C	A	5468.77	.	AC=1;AF=0.500;AN=2;DB;DP=605;set=Intersection	GT:AD:AF:DP	0/1:334,263:0.44:597
chr10	26463569	rs3758448	G	A	482.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:16,19:0.54:35
chr10	26463587	rs3758447	C	G	337.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:9,15:0.62:24
chr10	26465792	rs17739680	T	C	4212.77	.	AC=1;AF=0.500;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	0/1:202,192:0.49:394
chr10	26500658	rs10508715	A	G	648.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:30,27:0.47:57
chr10	26505822	rs2839671	G	A	1757.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:89,87:0.49:176
chr10	26507847	rs7071922	C	G	289.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:18,15:0.45:33
chr10	26512615	rs112861572	GGT	G	172.73	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:30,9:0.23:39
chr10	26569755	rs8190748	A	G	463.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:21,19:0.47:40
chr10	26581321	rs3824694	G	C	2483.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:88,112:0.56:200
chr10	26781157	rs74869251	C	T	1969.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:46,81:0.64:127
chr10	26781388	rs1775246	G	A	4078.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr10	26825151	rs71521689	GA	G	274.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.892;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=4.055;MLEAC=1;MLEAF=0.500;MQ=61.28;MQRankSum=1.452;QD=8.86;ReadPosRankSum=1.355;SOR=1.697;set=HC	GT:AD:AF:DP	0/1:8,23:0.74:31
chr10	26986932	rs2448114	T	C	173.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:29,11:0.28:40
chr10	26990849	rs1677726	T	G	570.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:33,27:0.45:60
chr10	26991037	rs1677725	A	G	371.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.912;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=2.015;MLEAC=1;MLEAF=0.500;MQ=59.83;MQRankSum=-3.726;QD=2.46;ReadPosRankSum=1.886;SOR=0.984;set=HC	GT:AD:AF:DP	0/1:132,19:0.13:151
chr10	26991045	rs1780186	T	C	350.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.656;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=2.021;MLEAC=1;MLEAF=0.500;MQ=59.83;MQRankSum=-3.796;QD=2.25;ReadPosRankSum=1.510;SOR=1.003;set=HC	GT:AD:AF:DP	0/1:137,19:0.12:156
chr10	26991067	rs71403882	CG	C	314.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.740;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.83;MQRankSum=-4.076;QD=2.11;ReadPosRankSum=0.899;SOR=0.595;set=HC	GT:AD:AF:DP	0/1:133,16:0.11:149
chr10	26991179	rs1780185	G	A	59.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.529;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=2.576;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.06;ReadPosRankSum=1.854;SOR=1.773;set=HC	GT:AD:AF:DP	0/1:24,5:0.17:29
chr10	26993597	rs34296355	AT	A	653.73	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:36,31:0.46:67
chr10	26993725	rs1677730	G	A	1346.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr10	26993737	rs1780193	A	T	1272.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr10	26994150	rs1780192	A	C	4316.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr10	26998739	rs2368183	G	C	3485.77	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:161,165:0.51:326
chr10	27009334	rs1780196	A	G	3825.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr10	27031214	rs10764638	A	G	214.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:5,10:0.67:15
chr10	27037799	rs3839922	TG	T	650.73	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:28,22:0.44:50
chr10	27054375	rs7915128	C	T	261.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:15,11:0.42:26
chr10	27059608	rs1324637	C	T	875.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:32,41:0.56:73
chr10	27065976	rs7096584	G	A	2504.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:165,123:0.43:288
chr10	27128580	rs66873851	T	TA	231.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.574;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=3.645;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=0.798;QD=6.44;ReadPosRankSum=0.023;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:17,19:0.53:36
chr10	27294449	rs3215884	CAT	C	172.73	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:14,6:0.30:20
chr10	27303605	rs2274741	A	T	741.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:48,38:0.44:86
chr10	27317778	rs72807627	T	C	1528.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:127,83:0.40:210
chr10	27317840	rs10829163	C	T	970.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:93,57:0.38:150
chr10	27318370	rs10829164	C	T	1164.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:32,51:0.61:83
chr10	27322372	rs72515848	TTA	T	781.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.474;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=3.574;MLEAC=1;MLEAF=0.500;MQ=60.41;MQRankSum=1.168;QD=15.63;ReadPosRankSum=0.998;SOR=1.712;set=HC	GT:AD:AF:DP	0/1:28,22:0.44:50
chr10	27322391	rs12763200	C	T	664.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:21,18:0.46:39
chr10	27324781	rs66585308	G	C	435.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:16,22:0.58:38
chr10	27325997	rs35564547	T	C	187.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.889;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.05;ReadPosRankSum=0.225;SOR=0.260;set=HC	GT:AD:AF:DP	0/1:11,6:0.35:17
chr10	27326017	rs66494764	C	T	343.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.480;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=8.418;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.85;ReadPosRankSum=-1.731;SOR=0.061;set=HC	GT:AD:AF:DP	0/1:16,13:0.45:29
chr10	27326765	rs59771436	TA	T	168.73	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:10,10:0.50:20
chr10	27326999	rs7096505	T	C	1003.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:38,47:0.55:85
chr10	27329167	rs10829167	G	A	150.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:9,8:0.47:17
chr10	27333121	rs113123391	TA	T	91.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.527;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=1.591;QD=1.50;ReadPosRankSum=-0.051;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:44,17:0.28:61
chr10	27375377	rs10443987	A	T	1347.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:67,65:0.49:132
chr10	27375559	rs66853312	C	T	464.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:26,23:0.47:49
chr10	27375626	rs67629636	A	G	140.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr10	27381349	rs2297145	T	C	948.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:31,45:0.59:76
chr10	27382236	rs2297146	C	T	1044.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:45,44:0.49:89
chr10	27382528	rs2297149	G	A	3139.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:122,135:0.53:257
chr10	27382586	rs2297150	G	C	4106.77	.	AC=1;AF=0.500;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	0/1:171,183:0.52:354
chr10	27389197	rs7897309	T	C	1685.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:90,83:0.48:173
chr10	27389314	rs3737056	C	T	197.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:22,12:0.35:34
chr10	27400861	rs9833	G	A	1887.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:114,91:0.44:205
chr10	27401056	rs11015538	C	T	5577.77	.	AC=1;AF=0.500;AN=2;DB;DP=613;set=Intersection	GT:AD:AF:DP	0/1:322,284:0.47:606
chr10	27403635	rs12782501	T	C	923.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:43,44:0.51:87
chr10	27404927	rs2297151	G	T	127.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr10	27405096	rs2297152	A	G	2206.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:100,107:0.52:207
chr10	27405310	rs2480718	C	G	5069.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr10	27405360	rs35804170	G	GC	1188.73	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:37,39:0.51:76
chr10	27409555	rs10829190	G	A	3400.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:173,168:0.49:341
chr10	27412669	rs2274743	A	T	992.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:44,54:0.55:98
chr10	27415906	rs10829192	C	A	135.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr10	27423744	rs2275752	T	C	1653.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:72,81:0.53:153
chr10	27434483	rs2274634	G	A	1835.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:104,96:0.48:200
chr10	27437964	rs11538750	T	C	3725.77	.	AC=1;AF=0.500;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	0/1:190,183:0.49:373
chr10	27437994	rs10764675	C	T	2420.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:106,105:0.50:211
chr10	27442121	rs57671772	A	G	1757.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:83,81:0.49:164
chr10	27442247	rs788221	G	C	985.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:53,47:0.47:100
chr10	27443012	rs2274636	A	G	1081.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:76,56:0.42:132
chr10	27443083	rs2274637	A	T	1527.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:84,77:0.48:161
chr10	27444329	rs7907981	T	C	929.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:29,36:0.55:65
chr10	27444344	rs7907988	T	G	1222.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:39,49:0.56:88
chr10	27456003	rs788238	G	A	6009.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr10	27506854	rs1775355	C	T	5409.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr10	27508837	rs788213	T	C	5273.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr10	27523967	rs534226	G	A	2866.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr10	27529565	rs2489372	T	C	27572.77	.	AC=2;AF=1.00;AN=2;DB;DP=1004;set=Intersection	GT:AD:AF:DP	1/1:0,1002:1.00:1002
chr10	27538942	rs590142	T	C	4953.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr10	27570130	rs1252880	C	T	264.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.29;QD=29.42;SOR=4.615;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr10	27577568	rs2780686	G	A	1557.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:109,81:0.43:190
chr10	27623140	rs7088108	T	C	1807.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:74,79:0.52:153
chr10	27687225	rs2505323	A	G	2200.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:130,110:0.46:240
chr10	27687775	rs1638630	T	C	15540.77	.	AC=2;AF=1.00;AN=2;DB;DP=568;set=Intersection	GT:AD:AF:DP	1/1:2,558:1.00:560
chr10	27687965	rs2505327	A	G	4892.77	.	AC=1;AF=0.500;AN=2;DB;DP=511;set=Intersection	GT:AD:AF:DP	0/1:266,239:0.47:505
chr10	27687994	rs2484173	A	G	4584.77	.	AC=1;AF=0.500;AN=2;DB;DP=547;set=Intersection	GT:AD:AF:DP	0/1:303,236:0.44:539
chr10	27688109	rs2429485	T	C	4002.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.407;ClippingRankSum=0.000;DB;DP=436;ExcessHet=3.0103;FS=4.954;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.29;ReadPosRankSum=-0.268;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:234,197:0.46:431
chr10	27692062	rs2429491	T	C	735.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:27,28:0.51:55
chr10	27692099	rs2484179	A	G	1153.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:56,58:0.51:114
chr10	27692279	rs2484180	A	C	2712.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:165,138:0.46:303
chr10	27692371	rs2484181	T	G	922.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:52,43:0.45:95
chr10	27692403	rs2505307	C	A	365.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:25,18:0.42:43
chr10	27700887	rs2429499	G	A	683.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:37,34:0.48:71
chr10	27702169	rs6482625	C	T	5314.77	.	AC=1;AF=0.500;AN=2;DB;DP=620;set=Intersection	GT:AD:AF:DP	0/1:344,269:0.44:613
chr10	27702256	rs112067123	G	GC	10097.73	.	AC=1;AF=0.500;AN=2;DB;DP=785;set=Intersection	GT:AD:AF:DP	0/1:347,400:0.54:747
chr10	27702688	rs7087552	C	T	4573.77	.	AC=1;AF=0.500;AN=2;DB;DP=521;set=Intersection	GT:AD:AF:DP	0/1:292,223:0.43:515
chr10	27702725	rs6482626	A	G	4051.77	.	AC=1;AF=0.500;AN=2;DB;DP=499;set=Intersection	GT:AD:AF:DP	0/1:290,205:0.41:495
chr10	27703234	rs7071851	A	G	2022.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:59,90:0.60:149
chr10	27815665	rs2642273	A	G	527.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:14,23:0.62:37
chr10	27822619	rs72264716	TTC	T	374.73	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:9,11:0.55:20
chr10	27964470	rs2253230	G	A	3623.77	.	AC=1;AF=0.500;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	0/1:203,176:0.46:379
chr10	28032136	rs2252651	C	T	492.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:40,25:0.38:65
chr10	28142245	rs7898085	A	G	35.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:10,3:0.23:13
chr10	28142294	.	T	TATAAATAA	121	.	AC=1;AF=0.500;AN=2;BRF=0.0;FR=0.5000;HP=1;HapScore=2;MGOF=4;MMLQ=28;MQ=60.0;NF=1;NR=1;PP=121;QD=64.5;SC=AGACTCTGTCTATAAATAAAT;SbPval=0.21;Source=Platypus;TC=9;TCF=1;TCR=8;TR=2;WE=28142302;WS=28142284;set=Platypus	GT:AD:AF:DP	0/1:7,2:0.22:9
chr10	28151604	rs34181914	AT	A	1440.73	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:65,77:0.54:142
chr10	28225897	rs2297646	G	T	1468.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:64,66:0.51:130
chr10	28228865	rs7893462	A	G	2216.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:143,116:0.45:259
chr10	28233120	rs3824590	A	C	746.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:22,31:0.58:53
chr10	28233469	rs3802517	T	A	386.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:19,18:0.49:37
chr10	28233931	rs34717952	G	A	9347.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.219;ClippingRankSum=0.000;DB;DP=512;ExcessHet=3.0103;FS=1.121;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.58;ReadPosRankSum=-0.039;SOR=0.795;set=HC	GT:AD:AF:DP	0/1:257,246:0.49:503
chr10	28233931	.	GCA	ACG	2944	.	AC=1;AF=0.500;AN=2;BRF=0.41;FR=0.5000;HP=3;HapScore=1;MGOF=2;MMLQ=24;MQ=60.0;NF=53;NR=114;PP=2944;QD=20;SC=AAGGAACACCGCATTCCCATA;SbPval=0.62;Source=Platypus;TC=368;TCF=124;TCR=244;TR=167;WE=28233941;WS=28233921;set=Platypus	GT:AD:AF:DP	1/0:201,167:0.45:368
chr10	28233933	rs34084011	A	G	9347.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.456;ClippingRankSum=0.000;DB;DP=497;ExcessHet=3.0103;FS=1.132;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.12;ReadPosRankSum=-0.086;SOR=0.780;set=HC	GT:AD:AF:DP	0/1:250,239:0.49:489
chr10	28247957	rs34350686	A	C	1527.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:69,69:0.50:138
chr10	28259924	.	TAAATAAATAAATAAAC	T	1793.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.136;ClippingRankSum=0.000;DP=98;ExcessHet=3.0103;FS=1.905;MLEAC=1;MLEAF=0.500;MQ=63.44;MQRankSum=5.829;QD=18.68;ReadPosRankSum=-0.179;SOR=0.975;set=HC	GT:AD:AF:DP	0/1:40,56:0.58:96
chr10	28260151	rs4405206	A	G	3561.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:182,169:0.48:351
chr10	28358548	rs2763318	CA	AC	1531.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.55;SOR=3.026;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr10	28378758	rs2997211	T	C	4451.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr10	28491313	rs11598304	C	T	666.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:42,31:0.42:73
chr10	28822373	rs12767429	A	C	3603.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr10	28823126	rs35136724	G	A	592.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:23,27:0.54:50
chr10	28872481	.	CA	C	154.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.265;ClippingRankSum=0.000;DP=92;ExcessHet=3.0103;FS=3.913;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.297;QD=2.01;ReadPosRankSum=-0.863;SOR=0.310;set=HC	GT:AD:AF:DP	0/1:52,25:0.32:77
chr10	28879838	rs41283724	A	G	894.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:36,38:0.51:74
chr10	28903400	rs71391055	G	GTCTTCTTTAAAACA	1358.73	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:38,31:0.45:69
chr10	29136129	rs813935	A	G	9891.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:0,362:1.00:362
chr10	29137085	rs787323	C	T	1017.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr10	29162308	.	TATATACACACACACATAC	T	572	.	AC=1;AF=0.500;AN=2;BRF=0.39;FR=0.5000;HP=2;HapScore=1;MGOF=10;MMLQ=24;MQ=60.0;NF=3;NR=33;PP=572;QD=16.1111111111;SC=TATATATATATATATACACAC;SbPval=0.6;Source=Platypus;TC=46;TCF=4;TCR=42;TR=36;WE=29162334;WS=29162285;set=Platypus	GT:AD:AF:DP	1/0:10,36:0.78:46
chr10	29162324	rs35236571	TAC	T	1851.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.277;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=3.099;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=34.94;ReadPosRankSum=-0.257;SOR=2.004;set=HC	GT:AD:AF:DP	1/1:2,51:0.96:53
chr10	29578346	.	C	CT	157.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.819;ClippingRankSum=0.000;DP=65;ExcessHet=3.0103;FS=1.767;MLEAC=1;MLEAF=0.500;MQ=59.67;MQRankSum=-1.522;QD=4.04;ReadPosRankSum=1.585;SOR=1.236;set=HC	GT:AD:AF:DP	0/1:23,16:0.41:39
chr10	29580735	rs2148901	C	T	1864.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.354;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=0.782;MLEAC=1;MLEAF=0.500;MQ=56.55;MQRankSum=-1.458;QD=16.22;ReadPosRankSum=2.491;SOR=0.542;set=HC	GT:AD:AF:DP	0/1:66,49:0.43:115
chr10	29580743	rs2148902	G	A	1896.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.108;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=0.746;MLEAC=1;MLEAF=0.500;MQ=55.34;MQRankSum=-0.926;QD=15.81;ReadPosRankSum=1.630;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:68,52:0.43:120
chr10	29581527	rs11007514	C	T	7422.77	.	AC=1;AF=0.500;AN=2;DB;DP=742;set=Intersection	GT:AD:AF:DP	0/1:364,362:0.50:726
chr10	29581658	rs10826593	C	T	1827.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:60,75:0.56:135
chr10	29598896	rs2796293	A	G	14169.77	.	AC=2;AF=1.00;AN=2;DB;DP=510;set=Intersection	GT:AD:AF:DP	1/1:0,497:1.00:497
chr10	29747155	rs139380407	GCTC	G	3903.73	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:107,102:0.49:209
chr10	29747221	rs41299212	G	A	4813.77	.	AC=1;AF=0.500;AN=2;DB;DP=453;set=Intersection	GT:AD:AF:DP	0/1:221,225:0.50:446
chr10	29747417	rs1887465	C	T	3897.77	.	AC=1;AF=0.500;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	0/1:217,189:0.47:406
chr10	29747618	rs7098527	T	A	3368.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr10	29754535	rs17694739	G	A	1577.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:81,79:0.49:160
chr10	29754609	rs1057952	T	C	2937.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr10	29759174	rs3215848	TG	T	4118.73	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr10	29759225	rs11007607	A	G	8693.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr10	29759434	rs2274493	C	T	1443.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:82,64:0.44:146
chr10	29760209	rs2274494	C	T	3301.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr10	29762997	rs932794	C	G	4643.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr10	29769647	rs10763720	G	A	6716.77	.	AC=1;AF=0.500;AN=2;DB;DP=571;set=Intersection	GT:AD:AF:DP	0/1:247,318:0.56:565
chr10	29770551	rs11007612	A	G	4414.77	.	AC=1;AF=0.500;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	0/1:193,213:0.52:406
chr10	29776289	rs61192312	T	C	708.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:26,30:0.54:56
chr10	29776325	rs34472178	TAA	T	232.73	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:18,8:0.31:26
chr10	29777558	rs61737742	G	A	1528.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:57,68:0.54:125
chr10	29782066	rs4749439	A	G	3905.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr10	29783813	rs6481600	G	A	3553.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr10	29783885	rs1056782	A	G	5581.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr10	29783984	rs3031505	GAAACT	G	3796.73	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.13;QD=43.64;SOR=2.941;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr10	29784114	rs6481601	T	C	421.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.19;QD=28.12;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr10	29784188	rs2368401	A	G	62.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.99;QD=31.37;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr10	29784190	rs2368400	A	G	62.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.99;QD=31.37;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr10	29785191	rs11007625	G	A	2021.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr10	29797131	rs373003505	G	A	569.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.117;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=41.43;MQRankSum=0.251;QD=12.12;ReadPosRankSum=0.013;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:24,23:0.49:47
chr10	29801555	rs60356120	T	C	567.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:23,26:0.53:49
chr10	29801659	rs56817459	G	A	873.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:71,45:0.39:116
chr10	29812422	rs7070135	C	A	3560.77	.	AC=1;AF=0.500;AN=2;DB;DP=451;set=Intersection	GT:AD:AF:DP	0/1:259,186:0.42:445
chr10	29812602	rs7070678	G	T	13065.77	.	AC=2;AF=1.00;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	1/1:1,465:1.00:466
chr10	29813348	rs61846562	T	G	386.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:16,19:0.54:35
chr10	29813382	rs61846563	C	T	886.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:26,36:0.58:62
chr10	29818604	rs913035	A	C	710.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.446;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=4.323;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.56;ReadPosRankSum=1.905;SOR=0.358;set=HC	GT:AD:AF:DP	0/1:47,36:0.43:83
chr10	29818827	rs3780843	C	T	758.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:46,40:0.47:86
chr10	29820070	rs11819202	G	A	726.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:12,30:0.71:42
chr10	29821089	rs17756919	C	T	1523.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:55,67:0.55:122
chr10	29821475	rs41284748	G	A	1853.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:111,89:0.45:200
chr10	29821523	rs1328323	T	C	3723.77	.	AC=1;AF=0.500;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	0/1:170,171:0.50:341
chr10	29822032	rs1247696	C	T	9255.77	.	AC=2;AF=1.00;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	1/1:0,343:1.00:343
chr10	29822159	rs7076239	T	C	4433.77	.	AC=1;AF=0.500;AN=2;DB;DP=468;set=Intersection	GT:AD:AF:DP	0/1:258,204:0.44:462
chr10	29833998	rs2368393	A	G	9565.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.625;ClippingRankSum=0.000;DB;DP=496;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.56;ReadPosRankSum=-1.867;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:231,258:0.53:489
chr10	29834003	rs2368392	G	A	9194.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.813;ClippingRankSum=0.000;DB;DP=466;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.99;ReadPosRankSum=0.334;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:230,230:0.50:460
chr10	29834095	rs4463752	G	A	4396.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.26;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,118:1.00:118
chr10	29834095	.	GGTTTTTAGACTAAAATCTC	AGTTTTTAGACTAAAATCTC,AGTTTTTAGATTAAAATCTG	1960	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.33;FR=0.5000,0.5000;HP=1;HapScore=3;MGOF=21;MMLQ=27;MQ=60.0;NF=7,1;NR=97,35;PP=1588,1960;QD=15.6035693514;SC=CTCTGGAGACGGTTTTTAGAC;SbPval=0.53;Source=Platypus;TC=104;TCF=7;TCR=97;TR=104,36;WE=29834122;WS=29834085;set=Platypus	GT:AF:DP	0/1:1.00:104
chr10	29834105	rs1410472	C	T	1777.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.917;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=1.560;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.32;ReadPosRankSum=-0.587;SOR=1.214;set=HC	GT:AD:AF:DP	0/1:42,50:0.54:92
chr10	29834114	rs1410473	C	G	1650.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.643;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=4.767;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.01;ReadPosRankSum=0.089;SOR=1.928;set=HC	GT:AD:AF:DP	0/1:35,40:0.53:75
chr10	29839513	rs10159964	A	G	567.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:23,25:0.52:48
chr10	29839787	rs10160013	A	G	7609.77	.	AC=1;AF=0.500;AN=2;DB;DP=815;set=Intersection	GT:AD:AF:DP	0/1:420,385:0.48:805
chr10	29839798	rs17834991	A	G	8467.77	.	AC=1;AF=0.500;AN=2;DB;DP=793;set=Intersection	GT:AD:AF:DP	0/1:372,410:0.52:782
chr10	29839864	rs1270874	A	C	17103.77	.	AC=2;AF=1.00;AN=2;DB;DP=647;set=Intersection	GT:AD:AF:DP	1/1:0,643:1.00:643
chr10	29840038	rs3740003	A	G	3197.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:144,144:0.50:288
chr10	29840164	rs3740002	A	G	3010.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:144,146:0.50:290
chr10	29843833	rs1547169	C	T	4524.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.569;ClippingRankSum=0.000;DB;DP=434;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.47;ReadPosRankSum=-0.470;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:216,216:0.50:432
chr10	29844067	rs1547170	T	C	1146.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:26,43:0.62:69
chr10	29891161	rs11007666	A	G	3591.77	.	AC=1;AF=0.500;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	0/1:201,184:0.48:385
chr10	29891260	rs12416605	C	T	2509.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:135,117:0.46:252
chr10	29891321	rs2505901	T	C	2979.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr10	30306804	rs2478839	G	A	5270.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr10	30316072	rs3739998	C	G	15815.77	.	AC=2;AF=1.00;AN=2;DB;DP=556;set=Intersection	GT:AD:AF:DP	1/1:0,548:1.00:548
chr10	30317073	rs9337951	G	A	13578.77	.	AC=2;AF=1.00;AN=2;DB;DP=509;set=Intersection	GT:AD:AF:DP	1/1:3,500:0.99:503
chr10	30317949	rs2478835	C	T	13074.77	.	AC=2;AF=1.00;AN=2;DB;DP=472;set=Intersection	GT:AD:AF:DP	1/1:1,468:1.00:469
chr10	30611614	rs2484284	C	T	2254.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr10	30615638	rs1029172	A	G	2191.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr10	30626003	rs12221163	C	T	845.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr10	30629082	rs2689215	C	T	1519.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr10	30637995	rs10826783	C	G	6121.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr10	30638208	.	T	TAAA	821.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.726;ClippingRankSum=0.000;DP=209;ExcessHet=3.0103;FS=2.805;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.68;ReadPosRankSum=-0.904;SOR=0.177;set=HC	GT:AD:AF:DP	0/1:13,31:0.70:44
chr10	30653561	rs7094285	C	G	2558.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr10	30728101	rs1042058	T	C	5969.77	.	AC=1;AF=0.500;AN=2;DB;DP=596;set=Intersection	GT:AD:AF:DP	0/1:295,294:0.50:589
chr10	30728250	rs2907	A	G	5734.77	.	AC=1;AF=0.500;AN=2;DB;DP=587;set=Intersection	GT:AD:AF:DP	0/1:302,272:0.47:574
chr10	30739058	rs303428	A	G	428.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:20,20:0.50:40
chr10	30749895	rs3034	G	A	648.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:19,29:0.60:48
chr10	30901722	rs3832672	GC	G	3528.73	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr10	30901756	rs9954	G	A	6355.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr10	30974174	rs4749580	T	C	2633.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:104,119:0.53:223
chr10	30978100	rs199874956	GGT	CAC	54.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.358;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=2.331;JOINED;MLEAC=1;MLEAF=0.500;MQ=57.08;MQRankSum=-5.735;QD=0.91;ReadPosRankSum=1.718;SOR=1.028;set=HC	GT:AD:AF:DP	0/1:54,6:0.10:60
chr10	30978106	rs2368405	G	C	540.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.684;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=5.741;MLEAC=1;MLEAF=0.500;MQ=56.39;MQRankSum=1.490;QD=8.45;ReadPosRankSum=-1.334;SOR=1.749;set=HC	GT:AD:AF:DP	0/1:47,17:0.27:64
chr10	30978112	rs2887239	G	A	551.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.796;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=5.678;MLEAC=1;MLEAF=0.500;MQ=55.48;MQRankSum=1.934;QD=8.00;ReadPosRankSum=-0.163;SOR=1.745;set=HC	GT:AD:AF:DP	0/1:52,17:0.25:69
chr10	30978114	rs4747722	A	G	551.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.932;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=5.710;MLEAC=1;MLEAF=0.500;MQ=55.12;MQRankSum=1.814;QD=7.77;ReadPosRankSum=-0.357;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:53,18:0.25:71
chr10	30978164	rs28363791	A	G	971.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:81,51:0.39:132
chr10	30978206	rs61844348	G	C	121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.347;ClippingRankSum=0.000;DB;DP=255;ExcessHet=3.0103;FS=9.188;MLEAC=1;MLEAF=0.500;MQ=55.59;MQRankSum=-4.265;QD=0.48;ReadPosRankSum=-2.903;SOR=0.486;set=HC	GT:AD:AF:DP	0/1:222,32:0.13:254
chr10	30978274	rs4988769	T	C	2920.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.066;ClippingRankSum=0.000;DB;DP=436;ExcessHet=3.0103;FS=7.261;MLEAC=1;MLEAF=0.500;MQ=56.46;MQRankSum=-15.322;QD=6.78;ReadPosRankSum=2.291;SOR=0.924;set=HC	GT:AD:AF:DP	0/1:268,163:0.38:431
chr10	30978282	rs11008182	G	T	2068.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.474;ClippingRankSum=0.000;DB;DP=464;ExcessHet=3.0103;FS=1.967;MLEAC=1;MLEAF=0.500;MQ=56.53;MQRankSum=7.965;QD=4.51;ReadPosRankSum=-0.378;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:332,127:0.28:459
chr10	30985081	rs10826846	G	A	333.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:12,15:0.56:27
chr10	30986240	rs138927815	C	T	571.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.046;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.95;MQRankSum=0.921;QD=15.45;ReadPosRankSum=-0.065;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:21,16:0.43:37
chr10	30986242	rs11008188	A	G	571.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.851;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.03;MQRankSum=0.730;QD=14.29;ReadPosRankSum=0.575;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:24,16:0.40:40
chr10	30986244	rs11007616	A	G	614.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.811;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=1.711;MLEAC=1;MLEAF=0.500;MQ=59.08;MQRankSum=0.478;QD=15.76;ReadPosRankSum=0.503;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:23,16:0.41:39
chr10	30986253	rs4747726	G	A	660.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.691;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=3.172;MLEAC=1;MLEAF=0.500;MQ=59.68;MQRankSum=0.230;QD=14.68;ReadPosRankSum=0.070;SOR=0.313;set=HC	GT:AD:AF:DP	0/1:25,20:0.44:45
chr10	30986296	rs4749587	C	T	1011.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:59,48:0.45:107
chr10	30986348	rs4749588	G	A	1248.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:105,67:0.39:172
chr10	30989188	rs10740829	G	C	18467.77	.	AC=2;AF=1.00;AN=2;DB;DP=699;set=Intersection	GT:AD:AF:DP	1/1:2,684:1.00:686
chr10	30993448	rs10826848	G	A	6297.77	.	AC=1;AF=0.500;AN=2;DB;DP=533;set=Intersection	GT:AD:AF:DP	0/1:234,296:0.56:530
chr10	31001494	rs1826619	A	C	7567.77	.	AC=1;AF=0.500;AN=2;DB;DP=824;MQ=59.99;set=Intersection	GT:AD:AF:DP	0/1:433,378:0.47:811
chr10	31134557	rs17229657	T	C	1484.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:37,59:0.61:96
chr10	31138817	rs10160116	G	A	4688.77	.	AC=1;AF=0.500;AN=2;DB;DP=472;set=Intersection	GT:AD:AF:DP	0/1:249,217:0.47:466
chr10	31146643	rs4237394	T	C	4666.77	.	AC=1;AF=0.500;AN=2;DB;DP=482;set=Intersection	GT:AD:AF:DP	0/1:247,232:0.48:479
chr10	31166088	rs10763848	G	A	168.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:15,9:0.38:24
chr10	31803516	rs220060	G	A	3741.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr10	32097806	rs1029077	A	T	573.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:24,24:0.50:48
chr10	32097851	rs1029078	A	G	509.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:20,20:0.50:40
chr10	32099547	rs3840745	TA	T	704.73	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:36,48:0.57:84
chr10	32103077	rs2799012	C	T	212.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:17,10:0.37:27
chr10	32106851	rs2778650	A	G	903.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:47,44:0.48:91
chr10	32115133	rs2255544	A	G	1161.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:31,40:0.56:71
chr10	32120678	rs2808100	C	T	1193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.866;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.41;ReadPosRankSum=1.955;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:80,62:0.44:142
chr10	32120867	rs41289017	T	C	230.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:36,12:0.25:48
chr10	32128611	rs2808096	A	G	896.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.756;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=2.969;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.94;ReadPosRankSum=0.695;SOR=0.901;set=HC	GT:AD:AF:DP	0/1:36,46:0.56:82
chr10	32141460	rs2799021	T	C	4575.77	.	AC=1;AF=0.500;AN=2;DB;DP=455;set=Intersection	GT:AD:AF:DP	0/1:226,222:0.50:448
chr10	32143208	rs2808090	A	C	1181.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:46,45:0.49:91
chr10	32307534	rs11428920	T	TA	3115.73	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr10	32307536	rs55938482	T	A	3124.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr10	32309005	rs1775715	A	G	700.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:34,31:0.48:65
chr10	32311969	rs176924	A	G	10203.77	.	AC=2;AF=1.00;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	1/1:0,374:1.00:374
chr10	32328526	rs1251363	G	C	243.53	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:1,9:0.90:10
chr10	32575793	rs2986931	A	G	8524.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr10	32667234	rs11443059	G	GA	308.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:1,17:0.94:18
chr10	32742234	rs2505335	A	G	983.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:22,25:0.53:47
chr10	32742256	rs2490505	T	G	1209.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:36,39:0.52:75
chr10	32742332	.	G	A	226.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.257;ClippingRankSum=0.000;DP=156;ExcessHet=3.0103;FS=0.808;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.45;ReadPosRankSum=-0.762;SOR=0.821;set=HC	GT:AD:AF:DP	0/1:130,26:0.17:156
chr10	32745396	rs2244153	A	G	1302.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr10	32751901	rs2505380	G	A	3503.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr10	32759918	rs2460710	G	A	154.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:11,7:0.39:18
chr10	32833121	rs11008968	G	C	971.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:20,25:0.56:45
chr10	32833143	rs12266680	C	T	1054.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:25,30:0.55:55
chr10	32856937	rs12783494	T	G	241.78	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.339;ClippingRankSum=0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=20.15;ReadPosRankSum=-0.646;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:1,11:0.92:12
chr10	32974874	rs148671234	A	AAATAGATAAATAC	941.73	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:37,23:0.38:60
chr10	32974969	rs1762526	A	G	3086.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr10	32978136	rs1763784	G	A	292.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:15,13:0.46:28
chr10	33014354	rs138210257	TTG	T	1208.73	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:72,66:0.48:138
chr10	33015782	rs928701	G	A	749.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr10	33015855	rs4145863	G	A	199.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr10	33017782	rs10827116	C	T	575.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.166;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.86;ReadPosRankSum=-3.047;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:35,30:0.46:65
chr10	33018351	rs1414548	G	C	1452.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr10	33093858	rs35054696	TAC	T	1777.73	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:46,64:0.58:110
chr10	33123774	rs11009107	T	C	587.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:31,31:0.50:62
chr10	33123824	rs4448627	G	C	1993.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr10	33123972	rs11009108	G	A	319.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:11,15:0.58:26
chr10	33134696	rs145287806	T	TAC	412.73	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:3,16:0.84:19
chr10	33137515	rs2488294	T	G	977.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.777;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.78;ReadPosRankSum=0.709;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:55,45:0.45:100
chr10	33137551	rs2504011	T	C	1215.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:67,63:0.48:130
chr10	33143396	rs1418538	G	A	2927.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr10	33144132	rs34544892	GT	G	260.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.723;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=1.194;MLEAC=1;MLEAF=0.500;MQ=60.41;MQRankSum=1.498;QD=5.11;ReadPosRankSum=-0.499;SOR=0.475;set=HC	GT:AD:AF:DP	0/1:25,26:0.51:51
chr10	33165226	rs2488305	G	A	314.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:23,17:0.42:40
chr10	33190567	rs2153875	C	A	508.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.463;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=1.079;MLEAC=1;MLEAF=0.500;MQ=59.58;MQRankSum=-1.285;QD=10.60;ReadPosRankSum=-0.590;SOR=0.540;set=HC	GT:AD:AF:DP	0/1:22,26:0.54:48
chr10	33195877	rs3824602	C	T	669.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:37,33:0.47:70
chr10	33197197	rs1316757	A	C	1702.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:61,79:0.56:140
chr10	33201128	rs2504020	C	G	1846.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:74,77:0.51:151
chr10	33209266	rs2230396	G	T	4083.77	.	AC=1;AF=0.500;AN=2;DB;DP=470;set=Intersection	GT:AD:AF:DP	0/1:266,201:0.43:467
chr10	33211227	rs2230395	T	G	2056.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:124,102:0.45:226
chr10	33217110	rs2230394	G	A	3958.77	.	AC=1;AF=0.500;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	0/1:171,191:0.53:362
chr10	33219008	rs2256455	T	G	638.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:23,26:0.53:49
chr10	33471761	rs148435065	GCA	G	150.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.662;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=3.318;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.74;ReadPosRankSum=-0.758;SOR=0.288;set=HC	GT:AD:AF:DP	0/1:42,13:0.24:55
chr10	33545464	rs10827221	G	C	863.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:25,33:0.57:58
chr10	33552407	rs2070299	G	A	393.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:21,17:0.45:38
chr10	33552518	rs2070298	A	C	3608.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.231;ClippingRankSum=0.000;DB;DP=240;ExcessHet=3.0103;FS=1.602;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.10;ReadPosRankSum=1.463;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:139,100:0.42:239
chr10	33552522	rs2070297	G	A	3741.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.879;ClippingRankSum=0.000;DB;DP=249;ExcessHet=3.0103;FS=1.559;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.09;ReadPosRankSum=0.728;SOR=0.594;set=HC	GT:AD:AF:DP	0/1:142,106:0.43:248
chr10	33552696	rs7079053	A	G	11984.77	.	AC=2;AF=1.00;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	1/1:0,453:1.00:453
chr10	33619562	rs1411924	C	T	1632.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:1,54:0.98:55
chr10	33623444	rs61758234	A	T	5189.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:1,194:0.99:195
chr10	34400093	rs41276090	G	A	1484.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.631;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=1.306;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.83;ReadPosRankSum=2.098;SOR=0.561;set=HC	GT:AD:AF:DP	0/1:80,71:0.47:151
chr10	34420607	rs970166	G	A	3592.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr10	34619946	rs10740885	A	C	1440.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:62,59:0.49:121
chr10	34620220	rs3781128	C	T	2829.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:156,141:0.47:297
chr10	34636820	rs7077783	C	T	1576.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:73,75:0.51:148
chr10	34663981	.	AACACAC	A	1938.73	.	AC=2;AF=1.00;AN=2;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.24;QD=33.43;SOR=1.911;set=HC	GT:AD:AF:DP	1/1:1,57:0.98:58
chr10	34688273	rs62625032	C	G	2837.77	.	AC=1;AF=0.500;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	0/1:203,148:0.42:351
chr10	34688287	rs2796011	G	A	11739.77	.	AC=2;AF=1.00;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	1/1:0,349:1.00:349
chr10	34739166	rs982687	T	C	2626.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:126,129:0.51:255
chr10	34985197	rs5784425	C	CA	2538.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.432;ClippingRankSum=0.000;DB;DP=300;ExcessHet=3.0103;FS=0.483;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.858;QD=8.91;ReadPosRankSum=-0.062;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:119,166:0.58:285
chr10	35103684	rs113044591	G	A	290.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:12,13:0.52:25
chr10	35300981	rs5784438	CT	C	140.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.422;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.077;QD=3.06;ReadPosRankSum=-0.719;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:25,21:0.46:46
chr10	35302705	rs12830	C	T	1998.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr10	35314130	rs58779572	TA	T	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.274;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=2.003;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.26;ReadPosRankSum=-0.801;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:10,8:0.44:18
chr10	35320355	rs17582954	T	C	1604.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:115,77:0.40:192
chr10	35320383	rs3740083	C	T	7605.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr10	35321414	rs16935840	C	T	4689.77	.	AC=1;AF=0.500;AN=2;DB;DP=527;set=Intersection	GT:AD:AF:DP	0/1:279,239:0.46:518
chr10	35322024	rs12261654	G	A	1529.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr10	35324076	rs2244174	A	G	4398.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr10	35324314	rs35687560	G	A	1871.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:59,77:0.57:136
chr10	35327766	rs2384284	G	T	240.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:20,11:0.35:31
chr10	35328088	rs11010077	A	G	546.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr10	35338699	rs7900480	G	A	13592.77	.	AC=2;AF=1.00;AN=2;DB;DP=514;set=Intersection	GT:AD:AF:DP	1/1:2,503:1.00:505
chr10	35343497	rs2384288	T	C	681.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:41,32:0.44:73
chr10	35343525	rs2384289	G	A	1348.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr10	35360310	rs4934711	G	A	2221.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:2,75:0.97:77
chr10	35362977	rs12248333	A	G	5828.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr10	35426614	rs35808464	T	C	427.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:16,18:0.53:34
chr10	35426755	rs17499247	A	G	5001.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr10	35437239	rs34879823	A	AT	1376.73	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:65,61:0.48:126
chr10	35464778	rs1531550	C	T	4524.77	.	AC=1;AF=0.500;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	0/1:210,206:0.50:416
chr10	35467671	rs12260130	C	T	469.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr10	35484949	rs1057108	T	G	5954.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr10	35490525	rs34001864	G	A	426.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:23,20:0.47:43
chr10	35625845	rs59114674	C	G	1426.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr10	35625846	.	G	GC	1417.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr10	35772402	rs3802509	G	A	7201.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr10	35818799	.	CA	C	32.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.825;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.06;ReadPosRankSum=-0.181;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:22,9:0.29:31
chr10	35894666	rs627267	A	G	879.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:50,41:0.45:91
chr10	35894761	rs637881	G	A	179.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.891;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=6.690;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.56;ReadPosRankSum=0.076;SOR=0.061;set=HC	GT:AD:AF:DP	0/1:11,10:0.48:21
chr10	35928224	rs625858	C	G	4469.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr10	35930412	rs142623421	C	CG	676.73	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:9,33:0.79:42
chr10	36812362	rs2503084	C	T	8271.77	.	AC=1;AF=0.500;AN=2;DB;DP=733;set=Intersection	GT:AD:AF:DP	0/1:341,379:0.53:720
chr10	36813180	rs2503083	T	A	3118.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:142,144:0.50:286
chr10	36813198	rs2503082	A	G	8431.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;MQ=59.98;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr10	36813218	rs2505569	C	G	1886.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;MQ=59.98;set=Intersection	GT:AD:AF:DP	0/1:90,84:0.48:174
chr10	36813298	rs10764092	G	A	681.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:23,27:0.54:50
chr10	37433832	.	AG	GA	360	.	AC=1;AF=0.500;AN=2;BRF=0.34;FR=0.5000;HP=1;HapScore=1;MGOF=38;MMLQ=20;MQ=55.51;NF=8;NR=2;PP=360;QD=41.3467874862;SC=GTAAGTCCACAGATTCATGAA;SbPval=0.71;Source=Platypus;TC=34;TCF=26;TCR=8;TR=10;WE=37433841;WS=37433807;set=Platypus	GT:AD:AF:DP	1/0:24,10:0.29:34
chr10	37434077	rs115413281	A	C	136.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.266;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.90;MQRankSum=-5.765;QD=3.91;ReadPosRankSum=2.209;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:29,6:0.17:35
chr10	37434082	rs201494283	C	A	142.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.106;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.77;MQRankSum=-5.587;QD=4.33;ReadPosRankSum=1.636;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:27,6:0.18:33
chr10	37434091	rs199688969	G	C	145.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.082;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.77;MQRankSum=-5.495;QD=4.56;ReadPosRankSum=1.556;SOR=0.484;set=HC	GT:AD:AF:DP	0/1:26,6:0.19:32
chr10	37441200	rs11011050	T	C	506.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:25,26:0.51:51
chr10	37482182	.	AG	A	3997.73	.	AC=1;AF=0.500;AN=2;DP=257;set=Intersection	GT:AD:AF:DP	0/1:111,141:0.56:252
chr10	37508450	rs1148259	A	C	8114.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr10	38246545	rs2799499	A	G	1058.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr10	38260558	rs67120012	AAC	A	472.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.762;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=0.839;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=2.212;QD=3.87;ReadPosRankSum=0.083;SOR=0.549;set=HC	GT:AD:AF:DP	0/1:89,33:0.27:122
chr10	38306128	rs2738208	A	G	2860.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr10	38638887	rs71529003	CA	C	191.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.489;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=0.000;QD=3.04;ReadPosRankSum=-0.598;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:35,28:0.44:63
chr10	38639017	.	G	A	179.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.767;ClippingRankSum=0.000;DP=298;ExcessHet=3.0103;FS=6.034;MLEAC=1;MLEAF=0.500;MQ=52.69;MQRankSum=-6.054;QD=0.61;ReadPosRankSum=-1.564;SOR=0.934;set=HC	GT:AD:AF:DP	0/1:251,42:0.14:293
chr10	42379778	rs200478260	T	C	127.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.242;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.23;MQRankSum=-1.242;QD=15.97;ReadPosRankSum=1.242;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chr10	42379782	rs62642391	C	T	124.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.242;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.23;MQRankSum=-1.242;QD=15.60;ReadPosRankSum=0.566;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chr10	42379801	rs111137627	C	G	124.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.589;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.66;MQRankSum=-1.383;QD=13.86;ReadPosRankSum=0.366;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:5,4:0.44:9
chr10	42379820	rs369870496	CTTCAA	C	103.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.799;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.71;MQRankSum=-1.769;QD=7.98;ReadPosRankSum=-0.165;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:9,4:0.31:13
chr10	42379864	rs11523878	G	C	195.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.621;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.98;ReadPosRankSum=0.922;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:4,10:0.71:14
chr10	42379938	.	C	CCATTA	174.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.088;ClippingRankSum=0.000;DP=63;ExcessHet=3.0103;FS=12.155;MLEAC=1;MLEAF=0.500;MQ=43.03;MQRankSum=-1.928;QD=5.64;ReadPosRankSum=-0.196;SOR=3.682;set=HC	GT:AD:AF:DP	0/1:24,7:0.23:31
chr10	42905431	rs3004228	A	T	403.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:43,18:0.30:61
chr10	42905510	rs2419684	A	C	2255.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:121,107:0.47:228
chr10	42922595	rs2489725	A	G	206.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.322;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=1.524;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.08;ReadPosRankSum=-0.940;SOR=0.404;set=HC	GT:AD:AF:DP	0/1:21,13:0.38:34
chr10	42926170	rs66977053	TGG	T	807.73	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:24,22:0.48:46
chr10	42928567	.	CTTAATAT	C	2899	.	AC=1;AF=0.500;AN=2;BRF=0.33;FR=0.5000;HP=2;HapScore=2;MGOF=37;MMLQ=26;MQ=59.05;NF=19;NR=3;PP=2899;QD=20;SC=GAAACTGATACTTAATATTTA;SbPval=0.89;Source=Platypus;TC=69;TCF=53;TCR=16;TR=22;WE=42928594;WS=42928551;set=Platypus	GT:AD:AF:DP	0/1:47,22:0.32:69
chr10	42928668	rs67090148	GGAGTCTATC	G	4679.73	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:184,127:0.41:311
chr10	42928814	rs112881188	G	A	44.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282;ClippingRankSum=0.000;DB;DP=261;ExcessHet=3.0103;FS=1.545;MLEAC=1;MLEAF=0.500;MQ=59.48;MQRankSum=-9.080;QD=0.18;ReadPosRankSum=-2.599;SOR=0.523;set=HC	GT:AD:AF:DP	0/1:218,32:0.13:250
chr10	42928842	rs4570532	A	T	294.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.447;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=7.475;MLEAC=1;MLEAF=0.500;MQ=59.23;MQRankSum=-9.238;QD=2.02;ReadPosRankSum=0.040;SOR=0.411;set=HC	GT:AD:AF:DP	0/1:129,17:0.12:146
chr10	42928845	.	C	T	303.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.899;ClippingRankSum=0.000;DP=143;ExcessHet=3.0103;FS=7.481;MLEAC=1;MLEAF=0.500;MQ=59.22;MQRankSum=-9.139;QD=2.12;ReadPosRankSum=-0.452;SOR=0.411;set=HC	GT:AD:AF:DP	0/1:126,17:0.12:143
chr10	42928851	.	CA	C	270.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.110;ClippingRankSum=0.000;DP=123;ExcessHet=3.0103;FS=8.085;MLEAC=1;MLEAF=0.500;MQ=59.36;MQRankSum=-8.099;QD=2.20;ReadPosRankSum=-1.086;SOR=0.420;set=HC	GT:AD:AF:DP	0/1:108,15:0.12:123
chr10	42928858	rs371544593	T	G	207.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.626;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=6.527;MLEAC=1;MLEAF=0.500;MQ=59.21;MQRankSum=-9.570;QD=1.86;ReadPosRankSum=-1.009;SOR=0.462;set=HC	GT:AD:AF:DP	0/1:99,13:0.12:112
chr10	42928869	.	ATTTT	A	84.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.700;ClippingRankSum=0.000;DP=96;ExcessHet=3.0103;FS=1.451;MLEAC=1;MLEAF=0.500;MQ=59.30;MQRankSum=-8.462;QD=0.91;ReadPosRankSum=-0.951;SOR=0.346;set=HC	GT:AD:AF:DP	0/1:84,9:0.10:93
chr10	42928874	.	T	TGA	96.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.735;ClippingRankSum=0.000;DP=88;ExcessHet=3.0103;FS=3.397;MLEAC=1;MLEAF=0.500;MQ=59.27;MQRankSum=-8.713;QD=1.10;ReadPosRankSum=-0.682;SOR=0.252;set=HC	GT:AD:AF:DP	0/1:79,9:0.10:88
chr10	42928879	.	G	A	123.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.812;ClippingRankSum=0.000;DP=81;ExcessHet=3.0103;FS=3.389;MLEAC=1;MLEAF=0.500;MQ=59.20;MQRankSum=-8.346;QD=1.53;ReadPosRankSum=-1.706;SOR=0.257;set=HC	GT:AD:AF:DP	0/1:72,9:0.11:81
chr10	42928885	.	G	A	156.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.724;ClippingRankSum=0.000;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.48;MQRankSum=-7.487;QD=2.31;ReadPosRankSum=-2.282;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:61,7:0.10:68
chr10	42949828	rs200497651	T	C	128.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.375;ClippingRankSum=0.000;DB;DP=324;ExcessHet=3.0103;FS=0.793;MLEAC=1;MLEAF=0.500;MQ=59.14;MQRankSum=-17.082;QD=0.40;ReadPosRankSum=1.900;SOR=0.792;set=HC	GT:AD:AF:DP	0/1:296,25:0.08:321
chr10	42949838	.	TG	CA	229.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.930;ClippingRankSum=0.000;DP=288;ExcessHet=3.0103;FS=1.757;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.02;MQRankSum=-16.081;QD=0.81;ReadPosRankSum=0.432;SOR=0.926;set=HC	GT:AD:AF:DP	0/1:260,25:0.09:285
chr10	42949858	.	T	C	395.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.249;ClippingRankSum=0.000;DP=220;ExcessHet=3.0103;FS=1.834;MLEAC=1;MLEAF=0.500;MQ=58.77;MQRankSum=-14.002;QD=1.82;ReadPosRankSum=-1.365;SOR=0.887;set=HC	GT:AD:AF:DP	0/1:194,24:0.11:218
chr10	42949867	.	T	C	342.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.698;ClippingRankSum=0.000;DP=203;ExcessHet=3.0103;FS=1.958;MLEAC=1;MLEAF=0.500;MQ=58.81;MQRankSum=-13.381;QD=1.71;ReadPosRankSum=-1.138;SOR=0.926;set=HC	GT:AD:AF:DP	0/1:179,22:0.11:201
chr10	42949880	.	G	T	174.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.257;ClippingRankSum=0.000;DP=154;ExcessHet=3.0103;FS=11.625;MLEAC=1;MLEAF=0.500;MQ=58.64;MQRankSum=-12.304;QD=1.14;ReadPosRankSum=-0.168;SOR=2.405;set=HC	GT:AD:AF:DP	0/1:139,14:0.09:153
chr10	42949888	.	C	A	132.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.971;ClippingRankSum=0.000;DP=139;ExcessHet=3.0103;FS=14.209;MLEAC=1;MLEAF=0.500;MQ=58.54;MQRankSum=-11.593;QD=0.96;ReadPosRankSum=0.080;SOR=3.422;set=HC	GT:AD:AF:DP	0/1:125,13:0.09:138
chr10	42949893	.	C	T	108.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.724;ClippingRankSum=0.000;DP=131;ExcessHet=3.0103;FS=14.416;MLEAC=1;MLEAF=0.500;MQ=58.61;MQRankSum=-11.333;QD=0.84;ReadPosRankSum=0.025;SOR=3.311;set=HC	GT:AD:AF:DP	0/1:118,12:0.09:130
chr10	42949895	.	G	A	120.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.542;ClippingRankSum=0.000;DP=126;ExcessHet=3.0103;FS=14.492;MLEAC=1;MLEAF=0.500;MQ=58.56;MQRankSum=-11.109;QD=0.97;ReadPosRankSum=-0.397;SOR=3.345;set=HC	GT:AD:AF:DP	0/1:113,12:0.10:125
chr10	42949897	.	T	C	132.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.156;ClippingRankSum=0.000;DP=117;ExcessHet=3.0103;FS=11.954;MLEAC=1;MLEAF=0.500;MQ=58.59;MQRankSum=-10.697;QD=1.14;ReadPosRankSum=-0.461;SOR=3.217;set=HC	GT:AD:AF:DP	0/1:105,11:0.09:116
chr10	42949906	.	C	T	96.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.151;ClippingRankSum=0.000;DP=107;ExcessHet=3.0103;FS=9.407;MLEAC=1;MLEAF=0.500;MQ=58.61;MQRankSum=-10.220;QD=0.91;ReadPosRankSum=-0.838;SOR=2.918;set=HC	GT:AD:AF:DP	0/1:96,10:0.09:106
chr10	42965636	rs1255411	C	T	3149.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:158,153:0.49:311
chr10	43089965	rs210280	G	A	4887.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr10	43119123	rs158377	G	T	3129.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr10	43119159	rs158378	T	C	2436.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr10	43128395	rs209391	C	G	3180.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr10	43132232	rs209387	A	G	3027.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr10	43232450	rs702370	G	A	11860.77	.	AC=2;AF=1.00;AN=2;DB;DP=448;set=Intersection	GT:AD:AF:DP	1/1:0,440:1.00:440
chr10	43280057	rs55869085	CTT	C	15235.73	.	AC=2;AF=1.00;AN=2;DB;DP=484;set=Intersection	GT:AD:AF:DP	1/1:0,442:1.00:442
chr10	43281089	rs7074877	T	C	3728.77	.	AC=1;AF=0.500;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	0/1:213,190:0.47:403
chr10	43572832	rs12267460	G	A	1342.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:61,65:0.52:126
chr10	43572932	.	T	TGCGGCGG	134	.	AC=1;AF=0.500;AN=2;BRF=0.42;FR=0.5000;HP=1;HapScore=2;MGOF=17;MMLQ=21;MQ=60.36;NF=0;NR=3;PP=134;QD=52.0;SC=GCGCAGTGGCTGCGGCGGGCG;SbPval=1.0;Source=Platypus;TC=18;TCF=0;TCR=18;TR=3;WE=43572940;WS=43572922;set=Platypus	GT:AD:AF:DP	0/1:15,3:0.17:18
chr10	43572949	.	GAA	G	172.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.733;ClippingRankSum=0.000;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.54;MQRankSum=1.637;QD=8.64;ReadPosRankSum=-0.372;SOR=1.051;set=HC	GT:AD:AF:DP	0/1:14,6:0.30:20
chr10	43572950	.	AA	GC	64	.	AC=1;AF=0.500;AN=2;BRF=0.43;FR=0.5000;HP=1;HapScore=2;MGOF=17;MMLQ=24;MQ=60.0;NF=0;NR=2;PP=64;QD=58.7339374311;SC=GCGGCGGGCGAAGGGCAGGAC;SbPval=1.0;Source=Platypus;TC=13;TCF=2;TCR=11;TR=2;WE=43572959;WS=43572940;set=Platypus	GT:AD:AF:DP	0/1:11,2:0.15:13
chr10	43572951	.	A	AGCGGGCGGC	172.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.867;ClippingRankSum=0.000;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.54;MQRankSum=1.637;QD=8.64;ReadPosRankSum=-0.372;SOR=1.051;set=HC	GT:AD:AF:DP	0/1:14,6:0.30:20
chr10	43595836	.	A	AT	330.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.779;ClippingRankSum=0.000;DP=122;ExcessHet=3.0103;FS=0.990;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.78;ReadPosRankSum=-1.013;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:83,36:0.30:119
chr10	43595968	rs1800858	A	G	4979.77	.	AC=1;AF=0.500;AN=2;DB;DP=469;set=Intersection	GT:AD:AF:DP	0/1:212,239:0.53:451
chr10	43596179	rs2435351	G	A	1877.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:79,89:0.53:168
chr10	43600689	rs2435352	A	G	3536.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:159,165:0.51:324
chr10	43604390	rs1864404	A	T	868.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:37,37:0.50:74
chr10	43607756	rs3026750	G	A	1131.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:42,31:0.42:73
chr10	43607759	rs34827976	GC	G	1125.73	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:40,32:0.44:72
chr10	43613843	rs1800861	G	T	3102.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:131,143:0.52:274
chr10	43620551	rs2742236	G	A	408.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:13,18:0.58:31
chr10	43622217	rs2075912	T	C	6680.77	.	AC=1;AF=0.500;AN=2;DB;DP=657;set=Intersection	GT:AD:AF:DP	0/1:322,325:0.50:647
chr10	43657811	rs2257767	T	G	735.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:32,30:0.48:62
chr10	43659536	rs2503865	C	T	1888.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:89,88:0.50:177
chr10	43671378	rs61579799	GT	G	389.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.329;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=1.061;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.91;ReadPosRankSum=-0.841;SOR=1.008;set=HC	GT:AD:AF:DP	0/1:32,34:0.52:66
chr10	43691691	rs1254968	C	T	5814.77	.	AC=1;AF=0.500;AN=2;DB;DP=507;set=Intersection	GT:AD:AF:DP	0/1:223,271:0.55:494
chr10	43694363	rs35825252	C	CA	3996.73	.	AC=1;AF=0.500;AN=2;DB;DP=235;MQ=60.05;set=Intersection	GT:AD:AF:DP	0/1:113,121:0.52:234
chr10	43695049	rs1254964	T	C	4869.77	.	AC=1;AF=0.500;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	0/1:205,225:0.52:430
chr10	43696086	rs1254963	C	T	445.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:27,20:0.43:47
chr10	43698240	rs1270015	G	T	5016.77	.	AC=1;AF=0.500;AN=2;DB;DP=660;set=Intersection	GT:AD:AF:DP	0/1:321,304:0.49:625
chr10	43698980	rs1254961	C	G	700.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:35,30:0.46:65
chr10	43883388	rs201660330	GA	G	98.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.913;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=1.265;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.18;ReadPosRankSum=-0.661;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:63,21:0.25:84
chr10	43932479	rs2244396	A	G	2688.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr10	43978087	rs3750890	A	G	11278.77	.	AC=2;AF=1.00;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	1/1:0,397:1.00:397
chr10	43991255	rs9422519	C	T	909.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr10	44052903	rs2230661	A	C	12567.77	.	AC=2;AF=1.00;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	1/1:1,431:1.00:432
chr10	44053013	rs2230660	G	C	16584.77	.	AC=2;AF=1.00;AN=2;DB;DP=604;set=Intersection	GT:AD:AF:DP	1/1:0,598:1.00:598
chr10	44053585	rs2999278	C	T	8770.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr10	44103923	rs3128239	G	C	1877.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr10	44104513	rs7342073	C	A	2108.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:1,74:0.99:75
chr10	44340865	rs4948785	G	A	8988.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	1/1:0,335:1.00:335
chr10	44341072	rs10535963	CATTGATT	C	12021.73	.	AC=2;AF=1.00;AN=2;DB;DP=290;MQ=60.04;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr10	44793299	rs2505734	C	T	7502.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr10	44868856	rs266091	A	C	15084.77	.	AC=2;AF=1.00;AN=2;DB;DP=546;set=Intersection	GT:AD:AF:DP	1/1:0,540:1.00:540
chr10	44871548	rs2297630	G	A	2952.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;MQ=59.99;set=Intersection	GT:AD:AF:DP	0/1:151,141:0.48:292
chr10	44873992	rs2839694	C	CCT	6645.73	.	AC=1;AF=0.500;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	0/1:159,184:0.54:343
chr10	44874216	rs2236533	G	A	1571.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:69,65:0.49:134
chr10	44874253	rs266085	C	T	852.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:34,34:0.50:68
chr10	45423282	rs10900131	C	G	2230.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr10	45427548	rs12414447	G	T	1285.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:116,76:0.40:192
chr10	45430462	rs17417442	C	T	3764.77	.	AC=1;AF=0.500;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	0/1:193,181:0.48:374
chr10	45466726	rs4948938	G	A	856.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr10	45473317	rs3740094	C	T	6939.77	.	AC=1;AF=0.500;AN=2;DB;DP=632;set=Intersection	GT:AD:AF:DP	0/1:297,332:0.53:629
chr10	45496120	rs12269028	A	T	13190.77	.	AC=2;AF=1.00;AN=2;DB;DP=486;set=Intersection	GT:AD:AF:DP	1/1:1,482:1.00:483
chr10	45891484	rs2029253	A	G	3672.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:126,161:0.56:287
chr10	45924023	rs1565096	G	A	2051.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:89,96:0.52:185
chr10	45924256	rs1565097	T	C	681.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:33,33:0.50:66
chr10	45939136	rs7900977	T	C	6031.77	.	AC=1;AF=0.500;AN=2;DB;DP=582;set=Intersection	GT:AD:AF:DP	0/1:290,286:0.50:576
chr10	45939617	rs2229136	A	G	4522.77	.	AC=1;AF=0.500;AN=2;DB;DP=468;set=Intersection	GT:AD:AF:DP	0/1:240,228:0.49:468
chr10	45939818	rs2288619	C	T	638.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:35,29:0.45:64
chr10	45953767	rs7908745	A	G	4378.77	.	AC=1;AF=0.500;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	0/1:223,210:0.48:433
chr10	45954807	rs2279433	A	G	1547.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:47,60:0.56:107
chr10	45956828	rs3764990	G	A	1241.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:51,50:0.50:101
chr10	45958676	rs17157825	G	A	3221.77	.	AC=1;AF=0.500;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	0/1:218,160:0.42:378
chr10	45958881	rs2291429	A	G	5784.77	.	AC=1;AF=0.500;AN=2;DB;DP=531;set=Intersection	GT:AD:AF:DP	0/1:259,267:0.51:526
chr10	45959385	rs12769244	G	A	4739.77	.	AC=1;AF=0.500;AN=2;DB;DP=448;set=Intersection	GT:AD:AF:DP	0/1:221,222:0.50:443
chr10	45959652	rs12771275	C	A	4063.77	.	AC=1;AF=0.500;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	0/1:210,194:0.48:404
chr10	46028465	rs147834018	A	C	582.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:21,26:0.55:47
chr10	46111950	rs1060848	A	G	7161.77	.	AC=1;AF=0.500;AN=2;DB;DP=712;set=Intersection	GT:AD:AF:DP	0/1:349,358:0.51:707
chr10	46112031	rs75205426	A	G	4805.77	.	AC=1;AF=0.500;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	0/1:174,217:0.55:391
chr10	46120241	rs112110885	C	T	152.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:14,9:0.39:23
chr10	46135215	rs41301629	C	T	2978.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:165,144:0.47:309
chr10	46143708	rs113970763	GACAAC	G	3207.73	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:104,85:0.45:189
chr10	46147080	rs17768650	G	C	3243.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:138,143:0.51:281
chr10	46147545	rs41301631	T	C	649.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:54,35:0.39:89
chr10	46148266	rs17157944	A	G	350.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:35,21:0.38:56
chr10	46148301	rs17157945	T	A	679.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:67,35:0.34:102
chr10	46222724	rs10793625	C	G	405.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr10	46222784	.	C	A	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.630;ClippingRankSum=0.000;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.08;MQRankSum=-7.442;QD=0.70;ReadPosRankSum=-2.610;SOR=0.927;set=HC	GT:AD:AF:DP	0/1:53,4:0.07:57
chr10	46222791	.	G	A	82.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.718;ClippingRankSum=0.000;DP=68;ExcessHet=3.0103;FS=1.439;MLEAC=1;MLEAF=0.500;MQ=59.13;MQRankSum=-5.685;QD=1.29;ReadPosRankSum=-4.196;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:55,9:0.14:64
chr10	46224381	rs17157971	C	T	8667.77	.	AC=1;AF=0.500;AN=2;DB;DP=928;set=Intersection	GT:AD:AF:DP	0/1:492,434:0.47:926
chr10	46242038	rs2446526	A	C	1007.77	.	AC=1;AF=0.500;AN=2;DB;DP=544;set=Intersection	GT:AD:AF:DP	0/1:445,96:0.18:541
chr10	46242094	rs200354637	A	G	940.77	.	AC=1;AF=0.500;AN=2;DB;DP=489;set=Intersection	GT:AD:AF:DP	0/1:392,95:0.20:487
chr10	46960084	rs9422009	G	A	4685.77	.	AC=1;AF=0.500;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	0/1:170,196:0.54:366
chr10	46963738	rs3127783	A	G	2688.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:110,124:0.53:234
chr10	46965018	rs3127785	C	G	10201.77	.	AC=1;AF=0.500;AN=2;DB;DP=959;set=Intersection	GT:AD:AF:DP	0/1:448,501:0.53:949
chr10	46965727	rs1889849	G	A	5529.77	.	AC=1;AF=0.500;AN=2;DB;DP=600;set=Intersection	GT:AD:AF:DP	0/1:324,268:0.45:592
chr10	46967672	rs2152530	C	T	11179.77	.	AC=1;AF=0.500;AN=2;DB;DP=1079;set=Intersection	GT:AD:AF:DP	0/1:541,532:0.50:1073
chr10	46968762	rs3127790	C	G	4394.77	.	AC=1;AF=0.500;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	0/1:246,213:0.46:459
chr10	46968879	rs10588658	AAC	A	1007.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.864;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=5.342;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.66;ReadPosRankSum=0.039;SOR=0.184;set=HC	GT:AD:AF:DP	0/1:19,35:0.65:54
chr10	46969496	rs3127792	A	G	8104.77	.	AC=1;AF=0.500;AN=2;DB;DP=711;set=Intersection	GT:AD:AF:DP	0/1:331,371:0.53:702
chr10	46970573	rs6587511	C	G	785.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:31,35:0.53:66
chr10	46970654	rs915449	C	A	1060.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:36,52:0.59:88
chr10	46970792	rs915450	G	C	439.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:12,21:0.64:33
chr10	46998719	rs201733825	GTCAC	G	3173.73	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:80,85:0.52:165
chr10	46998795	rs3127677	A	G	5424.77	.	AC=1;AF=0.500;AN=2;DB;DP=547;set=Intersection	GT:AD:AF:DP	0/1:269,270:0.50:539
chr10	46998894	rs3127817	G	A	10106.77	.	AC=1;AF=0.500;AN=2;DB;DP=1041;set=Intersection	GT:AD:AF:DP	0/1:541,491:0.48:1032
chr10	46998995	rs4926045	C	G	10198.77	.	AC=1;AF=0.500;AN=2;DB;DP=1009;set=Intersection	GT:AD:AF:DP	0/1:540,466:0.46:1006
chr10	46998999	rs3127818	G	A	20651.77	.	AC=1;AF=0.500;AN=2;DB;DP=1021;set=Intersection	GT:AD:AF:DP	0/1:469,548:0.54:1017
chr10	46999019	rs3127819	G	A	20549.77	.	AC=1;AF=0.500;AN=2;DB;DP=1051;set=Intersection	GT:AD:AF:DP	0/1:489,556:0.53:1045
chr10	46999030	rs4925989	C	T	10382.77	.	AC=1;AF=0.500;AN=2;DB;DP=1049;set=Intersection	GT:AD:AF:DP	0/1:570,476:0.46:1046
chr10	46999151	rs3127820	T	C	6757.77	.	AC=1;AF=0.500;AN=2;DB;DP=646;set=Intersection	GT:AD:AF:DP	0/1:322,313:0.49:635
chr10	46999178	rs7090312	A	C	6616.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.330;ClippingRankSum=0.000;DB;DP=588;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.43;ReadPosRankSum=1.981;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:291,288:0.50:579
chr10	46999189	rs3127678	C	T	10727.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.614;ClippingRankSum=0.000;DB;DP=580;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.79;ReadPosRankSum=-1.936;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:285,286:0.50:571
chr10	46999190	rs3127679	A	G	21128.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.083;ClippingRankSum=0.000;DB;DP=582;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=36.87;ReadPosRankSum=0.866;SOR=0.488;set=HC	GT:AD:AF:DP	1/1:1,572:1.00:573
chr10	46999198	rs3127680	G	T	10503.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.315;ClippingRankSum=0.000;DB;DP=561;ExcessHet=3.0103;FS=1.733;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.89;ReadPosRankSum=-1.855;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:278,278:0.50:556
chr10	46999465	rs3127682	A	G	5388.77	.	AC=1;AF=0.500;AN=2;DB;DP=535;set=Intersection	GT:AD:AF:DP	0/1:270,254:0.48:524
chr10	46999484	rs11204658	G	T	5346.77	.	AC=1;AF=0.500;AN=2;DB;DP=490;set=Intersection	GT:AD:AF:DP	0/1:234,246:0.51:480
chr10	46999577	rs11204659	G	T	12830.77	.	AC=1;AF=0.500;AN=2;DB;DP=665;set=Intersection	GT:AD:AF:DP	0/1:320,341:0.52:661
chr10	46999591	rs112620425	C	CATGAGGGAG	11857.73	.	AC=1;AF=0.500;AN=2;DB;DP=672;set=Intersection	GT:AD:AF:DP	0/1:348,298:0.46:646
chr10	46999596	rs7895979	G	A	13729.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.003;ClippingRankSum=0.000;DB;DP=708;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.61;ReadPosRankSum=-0.247;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:342,358:0.51:700
chr10	46999604	rs3127683	A	G	30371.77	.	AC=2;AF=1.00;AN=2;DB;DP=701;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.76;SOR=0.821;set=HC	GT:AD:AF:DP	1/1:0,694:1.00:694
chr10	46999732	rs4579877	G	A	8311.77	.	AC=1;AF=0.500;AN=2;DB;DP=767;set=Intersection	GT:AD:AF:DP	0/1:381,380:0.50:761
chr10	46999747	rs3127821	T	C	7780.77	.	AC=1;AF=0.500;AN=2;DB;DP=732;set=Intersection	GT:AD:AF:DP	0/1:366,361:0.50:727
chr10	46999922	rs4926046	G	T	5471.77	.	AC=1;AF=0.500;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	0/1:216,236:0.52:452
chr10	47000004	rs3127822	T	C	14765.77	.	AC=2;AF=1.00;AN=2;DB;DP=561;set=Intersection	GT:AD:AF:DP	1/1:0,545:1.00:545
chr10	47000071	rs4244614	G	A	7322.77	.	AC=1;AF=0.500;AN=2;DB;DP=711;set=Intersection	GT:AD:AF:DP	0/1:360,343:0.49:703
chr10	47000079	rs3127823	T	C	7354.77	.	AC=1;AF=0.500;AN=2;DB;DP=712;set=Intersection	GT:AD:AF:DP	0/1:342,360:0.51:702
chr10	47000146	rs3127684	C	T	5639.77	.	AC=1;AF=0.500;AN=2;DB;DP=534;set=Intersection	GT:AD:AF:DP	0/1:263,268:0.50:531
chr10	47000188	rs3127824	A	G	8942.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr10	47000239	rs7912299	C	T	1635.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:53,74:0.58:127
chr10	47087371	rs1048156	G	A	12785.77	.	AC=1;AF=0.500;AN=2;DB;DP=1221;MQ=59.98;set=Intersection	GT:AD:AF:DP	0/1:608,579:0.49:1187
chr10	47087474	rs1129838	C	T	11252.77	.	AC=1;AF=0.500;AN=2;DB;DP=1106;set=Intersection	GT:AD:AF:DP	0/1:563,529:0.48:1092
chr10	47087608	rs1936339	T	C	35476.77	.	AC=2;AF=1.00;AN=2;DB;DP=1126;set=Intersection	GT:AD:AF:DP	1/1:0,1117:1.00:1117
chr10	47087680	rs1048157	C	T	11242.77	.	AC=1;AF=0.500;AN=2;DB;DP=1183;set=Intersection	GT:AD:AF:DP	0/1:645,526:0.45:1171
chr10	47087731	rs1048158	C	T	12134.77	.	AC=1;AF=0.500;AN=2;DB;DP=1322;set=Intersection	GT:AD:AF:DP	0/1:715,591:0.45:1306
chr10	47087830	rs1129839	G	A	10725.77	.	AC=1;AF=0.500;AN=2;DB;DP=1039;set=Intersection	GT:AD:AF:DP	0/1:529,499:0.49:1028
chr10	47405767	rs199589563	T	A	213.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.087;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=39.25;MQRankSum=-1.691;QD=17.81;ReadPosRankSum=0.799;SOR=1.445;set=HC	GT:AD:AF:DP	0/1:4,8:0.67:12
chr10	47667164	rs4076960	C	T	1335.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr10	47667380	rs4076959	C	T	13685.77	.	AC=2;AF=1.00;AN=2;DB;DP=517;set=Intersection	GT:AD:AF:DP	1/1:0,512:1.00:512
chr10	47668707	rs4409768	T	C	3473.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr10	47668721	rs4570521	G	A	2646.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr10	47669277	rs61845226	C	G	3257.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr10	47669320	rs113650392	G	A	2791.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=52.79;QD=43.62;SOR=2.376;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr10	47669324	rs113530203	A	T	2693.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=52.27;QD=44.90;SOR=2.226;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr10	47677955	rs6602879	A	G	1850.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:105,92:0.47:197
chr10	47678021	rs7100993	C	T	3803.77	.	AC=1;AF=0.500;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	0/1:200,182:0.48:382
chr10	47701302	rs7091749	G	C	11849.77	.	AC=2;AF=1.00;AN=2;DB;DP=460;set=Intersection	GT:AD:AF:DP	1/1:0,444:1.00:444
chr10	47701362	rs41284477	T	C	2072.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:113,110:0.49:223
chr10	47756004	rs3013885	T	C	3503.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr10	47756145	rs200192962	T	C	2199.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.26;QD=25.88;SOR=1.694;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr10	48386110	rs2070706	T	C	1829.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr10	48414570	rs7923671	A	G	2183.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr10	48426798	rs743509	C	T	2223.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:3,75:0.96:78
chr10	48429650	rs2236723	G	A	2528.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr10	48438734	rs1126827	C	T	2957.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr10	49392575	rs931743	C	G	5230.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:2,181:0.99:183
chr10	49393781	.	G	A	4778.77	.	AC=1;AF=0.500;AN=2;DP=524;set=Intersection	GT:AD:AF:DP	0/1:280,239:0.46:519
chr10	49420008	rs1864345	T	C	1137.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:44,51:0.54:95
chr10	49420126	rs145152474	G	A	1519.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:137,79:0.37:216
chr10	49420205	rs72792229	C	T	1756.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:59,79:0.57:138
chr10	49440346	rs6537556	C	T	2454.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:151,126:0.45:277
chr10	49446204	rs905184	T	C	968.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:40,47:0.54:87
chr10	49450443	rs280612	A	G	4458.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr10	49609578	rs3730154	C	A	1463.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr10	49658248	rs1867585	G	A	3678.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:2,137:0.99:139
chr10	49659559	rs10776601	C	T	16068.77	.	AC=2;AF=1.00;AN=2;DB;DP=600;set=Intersection	GT:AD:AF:DP	1/1:0,595:1.00:595
chr10	49659644	rs72796303	A	G	4021.77	.	AC=1;AF=0.500;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	0/1:236,200:0.46:436
chr10	49659691	rs115507432	C	A	1768.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:135,95:0.41:230
chr10	49661341	rs7092959	A	G	4937.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr10	49662854	rs12355719	G	A	198.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.086;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=16.56;ReadPosRankSum=-0.518;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:3,9:0.75:12
chr10	49662884	rs11101327	A	G	611.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr10	49663184	rs72796308	G	A	1083.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:83,51:0.38:134
chr10	49667713	rs1867575	G	A	21179.77	.	AC=2;AF=1.00;AN=2;DB;DP=806;set=Intersection	GT:AD:AF:DP	1/1:1,802:1.00:803
chr10	49667795	rs3853761	T	C	17066.77	.	AC=2;AF=1.00;AN=2;DB;DP=656;set=Intersection	GT:AD:AF:DP	1/1:2,650:1.00:652
chr10	49687556	rs4240511	A	C	3042.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr10	49687594	rs4838601	G	A	4025.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr10	49687800	rs4080665	G	A	1198.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:59,51:0.46:110
chr10	49687925	rs4575219	C	G	4196.77	.	AC=1;AF=0.500;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	0/1:178,194:0.52:372
chr10	49687964	rs4240513	A	C	20313.77	.	AC=2;AF=1.00;AN=2;DB;DP=465;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.97;SOR=0.728;set=HC	GT:AD:AF:DP	1/1:0,462:1.00:462
chr10	49687971	rs4240514	T	C	20123.77	.	AC=2;AF=1.00;AN=2;DB;DP=458;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.23;SOR=0.742;set=HC	GT:AD:AF:DP	1/1:0,455:1.00:455
chr10	49688014	rs4838602	C	A	11811.77	.	AC=2;AF=1.00;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	1/1:0,436:1.00:436
chr10	49690351	rs1445157	T	C	12337.77	.	AC=2;AF=1.00;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	1/1:0,445:1.00:445
chr10	49701652	rs10735226	G	T	1509.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr10	49732141	rs7089439	C	T	945.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:65,50:0.43:115
chr10	49763418	rs6143892	GAGGAGTGTCACGA	G	721.73	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:19,20:0.51:39
chr10	49763618	rs1838570	C	T	2187.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.257;ClippingRankSum=0.000;DB;DP=254;ExcessHet=3.0103;FS=0.459;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.68;ReadPosRankSum=0.938;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:137,115:0.46:252
chr10	49763677	rs1838569	A	C	1200.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:74,62:0.46:136
chr10	49763690	rs1838568	G	C	964.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:61,49:0.45:110
chr10	49763709	rs1445148	T	A	1492.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.439;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=2.957;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.56;ReadPosRankSum=0.529;SOR=1.044;set=HC	GT:AD:AF:DP	0/1:45,40:0.47:85
chr10	49763717	rs7098068	C	T	1480.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.362;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=1.970;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.48;ReadPosRankSum=-0.541;SOR=1.030;set=HC	GT:AD:AF:DP	0/1:37,39:0.51:76
chr10	49790972	rs2289808	C	T	2864.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:153,136:0.47:289
chr10	49804554	rs10776627	A	G	4231.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr10	49804785	rs10745280	T	G	8652.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr10	49812917	rs17010948	T	C	3768.77	.	AC=1;AF=0.500;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	0/1:171,165:0.49:336
chr10	49929491	rs10857625	A	C	3770.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:126,167:0.57:293
chr10	49933974	rs7072606	T	C	922.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:87,47:0.35:134
chr10	49944315	rs1871600	A	T	647.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:22,25:0.53:47
chr10	49968596	rs11101460	G	A	718.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:21,31:0.60:52
chr10	49983890	rs1871604	G	T	7702.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr10	49985181	rs183610754	C	T	736.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:26,30:0.54:56
chr10	49998063	rs41282005	G	A	1983.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:104,87:0.46:191
chr10	49998824	rs10857644	C	T	9576.77	.	AC=1;AF=0.500;AN=2;DB;DP=848;set=Intersection	GT:AD:AF:DP	0/1:390,448:0.53:838
chr10	50013402	rs2170132	T	C	6454.77	.	AC=1;AF=0.500;AN=2;DB;DP=631;set=Intersection	GT:AD:AF:DP	0/1:315,315:0.50:630
chr10	50013531	rs11101508	A	G	1273.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:51,48:0.48:99
chr10	50013867	rs41282013	G	A	568.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:23,25:0.52:48
chr10	50025396	rs7097397	G	A	7888.77	.	AC=1;AF=0.500;AN=2;DB;DP=852;set=Intersection	GT:AD:AF:DP	0/1:458,386:0.46:844
chr10	50030730	rs10857651	G	A	670.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:17,27:0.61:44
chr10	50031212	rs113439641	CT	C	434.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.550;ClippingRankSum=0.000;DB;DP=473;ExcessHet=3.0103;FS=0.456;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=2.725;QD=0.99;ReadPosRankSum=1.538;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:345,94:0.21:439
chr10	50038720	rs3747875	G	T	541.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:17,23:0.57:40
chr10	50038800	rs3747874	A	G	1564.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:66,73:0.53:139
chr10	50040562	rs3747873	A	G	5845.77	.	AC=1;AF=0.500;AN=2;DB;DP=533;set=Intersection	GT:AD:AF:DP	0/1:275,257:0.48:532
chr10	50040610	rs3747872	T	G	9251.77	.	AC=1;AF=0.500;AN=2;DB;DP=859;set=Intersection	GT:AD:AF:DP	0/1:432,424:0.50:856
chr10	50075216	rs143498489	A	AAAAAT,AAAAATAAAAT	913.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=26;set=Intersection	GT:AF:DP	1/2:0.61,0.39:18
chr10	50075461	rs2663019	G	A	615.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:18,27:0.60:45
chr10	50083111	rs2620881	T	C	3510.77	.	AC=1;AF=0.500;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	0/1:177,168:0.49:345
chr10	50085057	rs199867851	T	G	533.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:22,25:0.53:47
chr10	50085267	rs1904595	C	G	622.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:26,28:0.52:54
chr10	50108145	rs2671693	G	C	822.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr10	50109902	rs2663046	G	A	7632.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr10	50110015	rs7068839	A	T	1579.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr10	50121784	rs10776653	T	C	9573.77	.	AC=2;AF=1.00;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	1/1:0,350:1.00:350
chr10	50122181	rs7094610	C	A	5378.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr10	50149674	rs2671717	A	G	2296.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr10	50154768	rs2663066	A	T	4184.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr10	50155036	rs113307003	T	TAC	665.73	.	AC=1;AF=0.500;AN=2;DB;DP=145;MQ=60.15;set=Intersection	GT:AD:AF:DP	0/1:52,32:0.38:84
chr10	50165128	rs3829206	G	A	1967.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:64,83:0.56:147
chr10	50165411	rs3750867	T	C	1145.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:61,55:0.47:116
chr10	50167621	rs10776660	A	G	1358.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:58,62:0.52:120
chr10	50167952	rs4317902	C	G	324.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:16,14:0.47:30
chr10	50171823	.	G	C	640.77	.	AC=1;AF=0.500;AN=2;DP=92;set=Intersection	GT:AD:AF:DP	0/1:60,30:0.33:90
chr10	50184949	rs2271565	C	T	9686.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	1/1:0,374:1.00:374
chr10	50186415	rs2292584	C	T	8264.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr10	50190923	rs61366126	G	GA	1004.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.204;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=7.811;MLEAC=1;MLEAF=0.500;MQ=60.41;MQRankSum=1.165;QD=12.11;ReadPosRankSum=-0.177;SOR=2.139;set=HC	GT:AD:AF:DP	0/1:22,61:0.73:83
chr10	50227785	rs1913525	T	C	3703.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr10	50227870	rs1913524	C	T	1784.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr10	50227927	rs1913523	C	A	639.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr10	50315893	rs13088	A	G	7158.77	.	AC=1;AF=0.500;AN=2;DB;DP=732;set=Intersection	GT:AD:AF:DP	0/1:375,350:0.48:725
chr10	50339925	rs12765281	G	A	4660.77	.	AC=1;AF=0.500;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	0/1:252,220:0.47:472
chr10	50340304	rs17773851	C	A	4552.77	.	AC=1;AF=0.500;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	0/1:190,212:0.53:402
chr10	50341954	rs34110351	A	G	2935.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:141,140:0.50:281
chr10	50374819	rs9418839	T	C	3926.77	.	AC=1;AF=0.500;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	0/1:172,180:0.51:352
chr10	50376106	rs2466756	A	C	2651.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:147,123:0.46:270
chr10	50531604	rs7093235	T	C	9293.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:0,336:1.00:336
chr10	50532588	rs10857469	C	G	2332.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:105,98:0.48:203
chr10	50532683	rs7921186	T	C	7526.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr10	50532812	rs11101093	A	G	4299.77	.	AC=1;AF=0.500;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	0/1:180,201:0.53:381
chr10	50533463	rs10857470	T	A	4572.77	.	AC=1;AF=0.500;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	0/1:224,210:0.48:434
chr10	50533617	rs2377940	T	C	21194.77	.	AC=2;AF=1.00;AN=2;DB;DP=805;set=Intersection	GT:AD:AF:DP	1/1:0,791:1.00:791
chr10	50533776	rs10857471	C	G	5472.77	.	AC=1;AF=0.500;AN=2;DB;DP=516;set=Intersection	GT:AD:AF:DP	0/1:248,259:0.51:507
chr10	50533841	rs11101094	G	C	4571.77	.	AC=1;AF=0.500;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	0/1:189,191:0.50:380
chr10	50534350	rs11101095	G	A	6806.77	.	AC=1;AF=0.500;AN=2;DB;DP=638;set=Intersection	GT:AD:AF:DP	0/1:310,322:0.51:632
chr10	50534599	rs10857472	G	A	8181.77	.	AC=1;AF=0.500;AN=2;DB;DP=793;set=Intersection	GT:AD:AF:DP	0/1:399,377:0.49:776
chr10	50534969	.	A	AACACACACAC	1968.73	.	AC=2;AF=1.00;AN=2;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=46.87;SOR=1.493;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr10	50594509	rs12261515	C	A	792.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:24,34:0.59:58
chr10	50666808	rs4253231	A	G	1144.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:55,54:0.50:109
chr10	50667394	.	T	C	159.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.330;ClippingRankSum=-0.000;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.29;ReadPosRankSum=-0.147;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:6,7:0.54:13
chr10	50681033	rs2229760	G	A	2665.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:129,131:0.50:260
chr10	50683438	rs4838522	T	C	2215.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:116,105:0.48:221
chr10	50686554	rs11101139	G	A	2275.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:131,113:0.46:244
chr10	50686600	.	T	TA	90.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.237;ClippingRankSum=0.000;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.99;ReadPosRankSum=0.546;SOR=0.574;set=HC	GT:AD:AF:DP	0/1:71,21:0.23:92
chr10	50691009	rs4240506	C	T	969.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr10	50691360	rs4253162	T	C	8578.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr10	50701156	rs4253132	G	A	8073.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr10	50723684	rs4253073	G	A	19274.77	.	AC=2;AF=1.00;AN=2;DB;DP=714;set=Intersection	GT:AD:AF:DP	1/1:0,702:1.00:702
chr10	50724016	rs4253072	C	T	12392.77	.	AC=2;AF=1.00;AN=2;DB;DP=460;set=Intersection	GT:AD:AF:DP	1/1:0,451:1.00:451
chr10	50740876	rs2228524	G	C	20046.77	.	AC=2;AF=1.00;AN=2;DB;DP=715;set=Intersection	GT:AD:AF:DP	1/1:0,710:1.00:710
chr10	50818762	rs1880675	C	T	2837.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:1,90:0.99:91
chr10	50820345	rs8187730	C	A	19092.77	.	AC=2;AF=1.00;AN=2;DB;DP=699;set=Intersection	GT:AD:AF:DP	1/1:0,696:1.00:696
chr10	50822192	rs7903315	G	C	552.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.71;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr10	50822226	rs7923716	T	G	730.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.10;SOR=5.283;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr10	50828506	rs1880677	G	A	12187.77	.	AC=2;AF=1.00;AN=2;DB;DP=448;set=Intersection	GT:AD:AF:DP	1/1:0,444:1.00:444
chr10	50856652	rs4838544	G	A	6333.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr10	50856772	rs10580502	TAC	T	441.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.215;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.77;ReadPosRankSum=-1.246;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:17,24:0.59:41
chr10	50857835	rs1917813	T	C	7497.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr10	50863083	rs12264845	A	C	10185.77	.	AC=2;AF=1.00;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	1/1:2,369:0.99:371
chr10	50863147	rs8178992	T	C	17765.77	.	AC=2;AF=1.00;AN=2;DB;DP=668;set=Intersection	GT:AD:AF:DP	1/1:0,663:1.00:663
chr10	50863565	rs7076926	C	T	5780.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr10	50887651	rs1153781	G	C	3877.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr10	50901809	rs1153797	T	G	2696.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr10	50916484	rs1258236	A	G	7997.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr10	50916542	rs4838554	C	T	3724.77	.	AC=1;AF=0.500;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	0/1:214,188:0.47:402
chr10	50916834	rs6537550	G	A	81.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:3,4:0.57:7
chr10	50943186	rs1258256	C	T	2381.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.948;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=0.514;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.29;ReadPosRankSum=-1.074;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:96,115:0.55:211
chr10	50944009	rs1258257	T	C	1780.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr10	50944613	rs1258258	C	T	2188.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:122,106:0.46:228
chr10	50947918	rs1258259	A	G	2971.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr10	50948987	rs3750757	C	T	847.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:43,34:0.44:77
chr10	50950976	rs11101224	G	A	4280.77	.	AC=1;AF=0.500;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	0/1:197,206:0.51:403
chr10	50952851	rs1268723	C	T	1256.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:68,63:0.48:131
chr10	50953830	rs7910114	G	A	2211.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:91,102:0.53:193
chr10	50960166	rs2304635	C	T	9028.77	.	AC=1;AF=0.500;AN=2;DB;DP=838;set=Intersection	GT:AD:AF:DP	0/1:404,431:0.52:835
chr10	50960209	rs1258184	G	A	6190.77	.	AC=1;AF=0.500;AN=2;DB;DP=681;set=Intersection	GT:AD:AF:DP	0/1:360,317:0.47:677
chr10	50960354	rs2304636	C	T	1734.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:77,77:0.50:154
chr10	50960581	rs2304637	A	G	2284.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:79,92:0.54:171
chr10	50964761	rs2889728	T	C	1301.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:49,53:0.52:102
chr10	51124153	rs2664655	T	G	8792.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:1,311:1.00:312
chr10	51537292	rs4131357	C	A	4882.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr10	51539745	rs35494443	AC	A	3164.73	.	AC=2;AF=1.00;AN=2;DB;DP=101;MQ=60.11;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr10	51539762	rs10763588	G	T	3688.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr10	51540291	rs11006274	T	C	3360.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr10	51549496	rs10993994	T	C	10646.77	.	AC=2;AF=1.00;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	1/1:0,411:1.00:411
chr10	51549545	rs4935176	G	T	9316.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:0,351:1.00:351
chr10	51556921	rs10994385	G	C	934.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:65,39:0.38:104
chr10	51581143	rs17776547	A	G	705.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:24,28:0.54:52
chr10	51582894	rs41306524	C	T	1553.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:90,76:0.46:166
chr10	51603257	.	TA	T	85.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.065;ClippingRankSum=0.000;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=50.88;MQRankSum=-1.431;QD=1.36;ReadPosRankSum=-0.277;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:43,20:0.32:63
chr10	51620317	rs200147310	A	G	240.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.887;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=43.63;MQRankSum=1.429;QD=6.51;ReadPosRankSum=-1.603;SOR=0.341;set=HC	GT:AD:AF:DP	0/1:25,12:0.32:37
chr10	51620499	rs78584401	G	A	768.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.488;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=1.166;MLEAC=1;MLEAF=0.500;MQ=49.49;MQRankSum=-5.180;QD=7.93;ReadPosRankSum=-1.522;SOR=0.954;set=HC	GT:AD:AF:DP	0/1:63,34:0.35:97
chr10	51620505	.	T	C	700.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.636;ClippingRankSum=0.000;DP=87;ExcessHet=3.0103;FS=3.159;MLEAC=1;MLEAF=0.500;MQ=49.78;MQRankSum=0.474;QD=8.05;ReadPosRankSum=1.688;SOR=1.393;set=HC	GT:AD:AF:DP	0/1:57,30:0.34:87
chr10	51623004	rs201547968	T	C	1425.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:122,77:0.39:199
chr10	51623014	.	GA	G	2985	.	AC=1;AF=0.500;AN=2;BRF=0.42;FR=0.5000;HP=10;HapScore=1;MGOF=20;MMLQ=24;MQ=40.65;NF=62;NR=45;PP=2985;QD=20;SC=TGCCAGCAAGGAAAAAAAAAA;SbPval=0.21;Source=Platypus;TC=238;TCF=117;TCR=121;TR=107;WE=51623041;WS=51622994;set=Platypus	GT:AD:AF:DP	1/0:131,107:0.45:238
chr10	51623024	rs146205287	A	C	2057.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.588;ClippingRankSum=0.000;DB;DP=284;ExcessHet=3.0103;FS=6.159;MLEAC=1;MLEAF=0.500;MQ=47.45;MQRankSum=-12.099;QD=7.27;ReadPosRankSum=0.785;SOR=1.052;set=HC	GT:AD:AF:DP	0/1:171,112:0.40:283
chr10	51623024	.	A	AC	2985	.	AC=1;AF=0.500;AN=2;BRF=0.42;FR=0.5000;HP=9;HapScore=1;MGOF=20;MMLQ=26;MQ=40.92;NF=62;NR=45;PP=2985;QD=20;SC=GAAAAAAAAAACAACAACATA;SbPval=0.21;Source=Platypus;TC=242;TCF=120;TCR=122;TR=107;WE=51623041;WS=51622994;set=Platypus	GT:AD:AF:DP	1/0:135,107:0.44:242
chr10	51623052	rs143647852	C	CT	6794.73	.	AC=1;AF=0.500;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	0/1:246,176:0.42:422
chr10	51623061	rs115719811	G	A	7293.77	.	AC=1;AF=0.500;AN=2;DB;DP=475;set=Intersection	GT:AD:AF:DP	0/1:265,210:0.44:475
chr10	51623147	rs373071373	C	T	2786.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.137;ClippingRankSum=0.000;DB;DP=282;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.39;MQRankSum=-8.394;QD=10.10;ReadPosRankSum=-0.804;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:137,139:0.50:276
chr10	51623174	rs141118546	C	A	1618.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.045;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=3.238;MLEAC=1;MLEAF=0.500;MQ=47.14;MQRankSum=-7.730;QD=11.40;ReadPosRankSum=-0.433;SOR=0.999;set=HC	GT:AD:AF:DP	0/1:69,73:0.51:142
chr10	51623190	rs137912947	T	C	788.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.615;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=2.218;MLEAC=1;MLEAF=0.500;MQ=47.24;MQRankSum=-6.810;QD=9.98;ReadPosRankSum=0.680;SOR=1.106;set=HC	GT:AD:AF:DP	0/1:40,39:0.49:79
chr10	51623647	rs377343859	CG	C	168.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.248;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=3.090;MLEAC=1;MLEAF=0.500;MQ=44.80;MQRankSum=-3.087;QD=14.06;ReadPosRankSum=0.285;SOR=0.086;set=HC	GT:AD:AF:DP	0/1:4,8:0.67:12
chr10	51623866	rs374725846	A	G	1125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.243;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.971;MLEAC=1;MLEAF=0.500;MQ=46.03;MQRankSum=-2.542;QD=15.21;ReadPosRankSum=1.017;SOR=0.566;set=HC	GT:AD:AF:DP	0/1:22,52:0.70:74
chr10	51631769	rs369521773	G	C	4121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.260;ClippingRankSum=0.000;DB;DP=1379;ExcessHet=3.0103;FS=0.613;MLEAC=1;MLEAF=0.500;MQ=47.65;MQRankSum=-6.643;QD=2.99;ReadPosRankSum=1.672;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:1047,331:0.24:1378
chr10	51631812	rs200391397	A	G	8041.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.382;ClippingRankSum=0.000;DB;DP=810;ExcessHet=3.0103;FS=1.137;MLEAC=1;MLEAF=0.500;MQ=47.22;MQRankSum=-4.736;QD=9.93;ReadPosRankSum=-0.570;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:421,389:0.48:810
chr10	51632906	rs146420399	G	A	1564.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.889;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=2.345;MLEAC=1;MLEAF=0.500;MQ=46.32;MQRankSum=-8.455;QD=10.29;ReadPosRankSum=-0.294;SOR=0.934;set=HC	GT:AD:AF:DP	0/1:81,71:0.47:152
chr10	51632971	rs200644678	A	G	4101.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.262;ClippingRankSum=0.000;DB;DP=506;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.22;MQRankSum=-11.961;QD=8.11;ReadPosRankSum=0.110;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:281,225:0.44:506
chr10	51633027	rs115081809	T	C	5818.77	.	AC=1;AF=0.500;AN=2;DB;DP=688;set=Intersection	GT:AD:AF:DP	0/1:370,318:0.46:688
chr10	51827839	rs113882441	T	C	673.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr10	51827896	rs11552619	C	T	388.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.43;QD=38.88;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr10	51827900	rs2805112	A	G	364.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.18;QD=40.53;SOR=4.615;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr10	51829283	rs141506171	C	T	6218.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr10	51829520	rs60965269	T	C	6483.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr10	51859758	rs200416566	A	G	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.876;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=40.04;MQRankSum=0.588;QD=3.31;ReadPosRankSum=0.494;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:6,6:0.50:12
chr10	51974489	.	T	C	186.80	.	AC=2;AF=1.00;AN=2;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.28;QD=26.69;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr10	52008381	.	G	A	2920.77	.	AC=1;AF=0.500;AN=2;DP=248;set=Intersection	GT:AD:AF:DP	0/1:115,131:0.53:246
chr10	52070947	rs2251601	T	C	76.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.653;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.07;ReadPosRankSum=0.844;SOR=0.404;set=HC	GT:AD:AF:DP	0/1:19,6:0.24:25
chr10	52086939	rs2246994	C	G	3880.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.692;ClippingRankSum=0.000;DB;DP=464;ExcessHet=3.0103;FS=0.525;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.53;ReadPosRankSum=-1.199;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:259,196:0.43:455
chr10	52103707	rs10763354	A	G	1575.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:79,78:0.50:157
chr10	52569637	rs10994563	G	A	1405.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:56,59:0.51:115
chr10	52576068	rs4245008	G	A	3060.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr10	52751070	rs66567258	AGCCGCCGCC	A	2969.73	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:89,81:0.48:170
chr10	52751088	rs35361017	C	CGCT	2736.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.275;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=2.011;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=-1.711;QD=14.95;ReadPosRankSum=0.949;SOR=0.909;set=HC	GT:AD:AF:DP	0/1:99,84:0.46:183
chr10	52751133	.	GA	G	522	.	AC=1;AF=0.500;AN=2;BRF=0.48;FR=0.5000;HP=6;HapScore=1;MGOF=65;MMLQ=24;MQ=60.06;NF=15;NR=28;PP=522;QD=12.7209302326;SC=GGGGCTCAGTGAAAAAATGAG;SbPval=0.8;Source=Platypus;TC=102;TCF=43;TCR=59;TR=43;WE=52751141;WS=52751123;set=Platypus	GT:AD:AF:DP	0/1:59,43:0.42:102
chr10	53458047	rs3740228	A	G	6013.77	.	AC=1;AF=0.500;AN=2;DB;DP=621;set=Intersection	GT:AD:AF:DP	0/1:322,285:0.47:607
chr10	53458998	rs2292828	A	G	5175.77	.	AC=1;AF=0.500;AN=2;DB;DP=514;set=Intersection	GT:AD:AF:DP	0/1:259,245:0.49:504
chr10	53667136	rs34697221	A	AT	236.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.333;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.04;ReadPosRankSum=1.720;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:27,20:0.43:47
chr10	53667443	rs10823860	C	T	1597.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:73,68:0.48:141
chr10	53667462	rs11000040	A	G	1002.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:57,44:0.44:101
chr10	53667476	rs7081919	G	A	896.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:46,38:0.45:84
chr10	53841337	rs1904024	A	G	1380.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:80,71:0.47:151
chr10	53841639	rs5784902	AG	A	409.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr10	53893539	rs17642863	A	T	1975.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr10	53921754	rs10824173	C	A	1033.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr10	54050079	rs10762675	G	A	1973.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr10	54074757	rs2241529	A	G	3121.77	.	AC=1;AF=0.500;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	0/1:191,161:0.46:352
chr10	54076271	rs1569198	A	G	4331.77	.	AC=1;AF=0.500;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	0/1:220,191:0.46:411
chr10	54528266	rs930507	G	C	7366.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr10	54528298	rs930508	G	C	5136.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr10	54528353	rs930509	C	G	2204.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr10	54530636	rs1982266	A	G	1494.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr10	54530694	rs1982267	G	T	600.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr10	55566299	rs200157124	T	TGTAA	2046.73	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:71,51:0.42:122
chr10	55568972	rs11003863	T	G	2815.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:140,133:0.49:273
chr10	55582905	rs10825114	G	T	4353.77	.	AC=1;AF=0.500;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	0/1:214,204:0.49:418
chr10	55587034	rs10740555	A	G	700.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:41,33:0.45:74
chr10	55588137	rs4570494	G	A	1231.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr10	55588479	rs12412822	C	T	87.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.803;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.31;ReadPosRankSum=-0.163;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:6,6:0.50:12
chr10	55588484	rs4935096	G	T	146.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:5,5:0.50:10
chr10	55590850	rs10825117	G	A	1449.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:91,68:0.43:159
chr10	55590942	rs66893390	TAGAC	T	5454.73	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:216,145:0.40:361
chr10	55590950	rs77597438	C	T	5518.77	.	AC=1;AF=0.500;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	0/1:221,153:0.41:374
chr10	55591313	rs7089209	G	A	1100.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:56,54:0.49:110
chr10	55617177	rs7083307	T	C	663.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr10	55626630	rs5785023	G	GA	1195.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.585;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.37;MQRankSum=2.556;QD=8.13;ReadPosRankSum=1.115;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:74,73:0.50:147
chr10	55663198	rs10740559	A	C	2096.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.364;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=2.683;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.40;ReadPosRankSum=0.537;SOR=0.438;set=HC	GT:AD:AF:DP	0/1:44,54:0.55:98
chr10	55663202	rs2593124	T	C	2064.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.904;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=3.870;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.73;ReadPosRankSum=0.499;SOR=0.401;set=HC	GT:AD:AF:DP	0/1:42,53:0.56:95
chr10	55719652	rs2593107	C	T	2217.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:125,110:0.47:235
chr10	55755491	rs2135720	C	T	4314.77	.	AC=1;AF=0.500;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	0/1:200,210:0.51:410
chr10	55779915	rs3812658	G	A	1691.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:99,76:0.43:175
chr10	55838950	rs1911433	A	G	1637.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:31,61:0.66:92
chr10	55943184	rs7093302	T	C	7364.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr10	55973889	rs10763086	G	A	2716.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr10	55996761	rs721825	C	T	4770.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:1,171:0.99:172
chr10	56076975	rs10763098	A	C	950.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:28,38:0.58:66
chr10	56077209	rs10740579	G	A	4894.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr10	56089166	rs11004239	C	T	38.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr10	56089223	rs11004240	A	G	414.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr10	56089263	rs857395	G	A	1070.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr10	56089567	rs7342012	C	T	352.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:14,15:0.52:29
chr10	56129066	rs11594958	A	G	1292.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:91,62:0.41:153
chr10	56287689	rs10825347	A	C	1916.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:87,86:0.50:173
chr10	56335067	rs7070440	A	G	198.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr10	56335099	rs10825362	C	T	385.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr10	56335273	rs7086121	G	A	200.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr10	56345303	rs4570492	T	C	5477.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;MQ=61.16;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr10	56345335	rs2026413	T	C	6679.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr10	56345378	rs11396767	T	TG	4131.73	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:20,223:0.92:243
chr10	56345425	rs2026412	G	A	6333.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr10	56345491	rs2026411	C	G	3880.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr10	56345511	rs2026410	A	G	3287.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr10	56423968	rs11004439	A	C	2687.77	.	AC=1;AF=0.500;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	0/1:237,148:0.38:385
chr10	58118630	rs2241666	T	C	8398.77	.	AC=1;AF=0.500;AN=2;DB;DP=836;set=Intersection	GT:AD:AF:DP	0/1:413,416:0.50:829
chr10	58119976	rs3861049	G	A	13457.77	.	AC=2;AF=1.00;AN=2;DB;DP=485;set=Intersection	GT:AD:AF:DP	1/1:0,477:1.00:477
chr10	59064371	rs1275284	C	G	282.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr10	59956556	rs2790149	C	T	225.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:18,13:0.42:31
chr10	59958956	rs1769044	C	A	321.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:30,17:0.36:47
chr10	59975743	rs2790146	A	T	784.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.347;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=6.261;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.66;ReadPosRankSum=1.313;SOR=2.022;set=HC	GT:AD:AF:DP	0/1:29,33:0.53:62
chr10	59987071	rs11398218	G	GT	315.73	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:5,11:0.69:16
chr10	59997644	rs2790217	A	T	1021.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:50,48:0.49:98
chr10	60027122	rs1339580	C	T	3318.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:146,160:0.52:306
chr10	60029163	rs1416763	C	T	1738.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:91,86:0.49:177
chr10	60036815	rs2254775	A	G	2144.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.892;ClippingRankSum=0.000;DB;DP=286;ExcessHet=3.0103;FS=0.924;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.61;ReadPosRankSum=0.721;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:165,117:0.41:282
chr10	60095143	rs1905456	T	C	1887.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr10	60120681	rs72051070	CA	C	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.484;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.71;ReadPosRankSum=0.542;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:34,11:0.24:45
chr10	60127574	rs58516265	GT	G	174.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:14,13:0.48:27
chr10	60146061	rs78325627	T	C	806.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:38,38:0.50:76
chr10	60380553	rs74687990	C	T	445.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:13,19:0.59:32
chr10	60548276	rs11812567	G	A	410.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:22,19:0.46:41
chr10	60558125	rs2393503	A	T	7560.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr10	60559047	rs2893789	G	C	2677.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr10	60563062	rs4245600	G	C	2865.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr10	60566137	rs3740451	G	A	2601.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr10	60573753	rs9416746	G	T	15829.77	.	AC=2;AF=1.00;AN=2;DB;DP=593;set=Intersection	GT:AD:AF:DP	1/1:0,582:1.00:582
chr10	60577256	rs41305703	C	T	724.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:30,30:0.50:60
chr10	60577393	rs4344442	T	C	9330.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:0,343:1.00:343
chr10	60588553	rs4948550	T	C	9194.77	.	AC=2;AF=1.00;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	1/1:0,341:1.00:341
chr10	60996453	rs10763600	G	A	3339.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr10	61005244	rs2452505	G	C	15932.77	.	AC=2;AF=1.00;AN=2;DB;DP=584;set=Intersection	GT:AD:AF:DP	1/1:0,573:1.00:573
chr10	61007534	rs1459996	A	G	3450.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr10	61007592	rs2446724	G	A	1404.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr10	61014056	rs1903252	C	A	3395.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr10	61111975	rs284606	G	C	1323.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr10	61122268	rs3078330	T	TTA	5321.73	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr10	61413497	rs77799409	G	C	3545.77	.	AC=1;AF=0.500;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	0/1:251,181:0.42:432
chr10	61414011	rs2242206	G	T	8340.77	.	AC=1;AF=0.500;AN=2;DB;DP=869;set=Intersection	GT:AD:AF:DP	0/1:443,411:0.48:854
chr10	61443808	rs1171660	A	G	2587.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:125,119:0.49:244
chr10	61552692	rs1053266	G	T	3514.77	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:169,168:0.50:337
chr10	61552774	rs1053265	C	T	4956.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr10	61564020	rs3841635	CTT	C	2918.73	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:48,76:0.61:124
chr10	61574357	.	A	AAC	2499.73	.	AC=1;AF=0.500;AN=2;DP=342;set=Intersection	GT:AD:AF:DP	0/1:172,104:0.38:276
chr10	61665886	rs1171830	C	A	6151.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr10	61802342	rs2393603	C	A	7580.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr10	61802353	rs2393604	A	T	8951.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:1,312:1.00:313
chr10	61802374	rs2393605	AA	TT	20206.77	.	AC=2;AF=1.00;AN=2;DB;DP=460;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,449:1.00:449
chr10	61802550	rs9888033	A	T	19113.77	.	AC=2;AF=1.00;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	1/1:1,449:1.00:450
chr10	61802561	rs2393607	G	T	18084.77	.	AC=2;AF=1.00;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	1/1:0,398:1.00:398
chr10	61802577	rs5785427	T	TC	14135.73	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chr10	61819024	rs34010158	TA	T	1808.73	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:133,95:0.42:228
chr10	61819049	rs10733757	T	G	3765.77	.	AC=1;AF=0.500;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	0/1:162,183:0.53:345
chr10	61822784	rs56278008	G	C	321.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:20,17:0.46:37
chr10	61823109	rs4568956	A	G	993.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:39,48:0.55:87
chr10	61831271	rs10821668	T	C	5002.77	.	AC=1;AF=0.500;AN=2;DB;DP=494;set=Intersection	GT:AD:AF:DP	0/1:259,231:0.47:490
chr10	61831744	rs10740006	A	G	7873.77	.	AC=1;AF=0.500;AN=2;DB;DP=760;set=Intersection	GT:AD:AF:DP	0/1:366,387:0.51:753
chr10	61840460	rs2241540	G	A	1406.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:62,61:0.50:123
chr10	61844308	rs76589554	C	T	1173.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:68,55:0.45:123
chr10	61846677	.	C	CT	145.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.964;ClippingRankSum=0.000;DP=82;ExcessHet=3.0103;FS=1.461;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.238;QD=2.91;ReadPosRankSum=-0.477;SOR=0.352;set=HC	GT:AD:AF:DP	0/1:33,17:0.34:50
chr10	61867897	.	G	GA	147.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.180;ClippingRankSum=0.000;DP=164;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.93;ReadPosRankSum=-0.301;SOR=0.615;set=HC	GT:AD:AF:DP	0/1:133,26:0.16:159
chr10	61868716	rs3750800	C	A	3952.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:174,186:0.52:360
chr10	61871430	rs10821675	C	G	613.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:25,27:0.52:52
chr10	61893898	rs3213829	T	G	1073.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:29,34:0.54:63
chr10	61900356	rs6479694	A	C	1936.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr10	61926728	rs11814723	A	G	1765.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:57,82:0.59:139
chr10	61956386	.	G	GA	105.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.264;ClippingRankSum=0.000;DP=110;ExcessHet=3.0103;FS=1.101;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.17;ReadPosRankSum=-0.472;SOR=0.919;set=HC	GT:AD:AF:DP	0/1:69,21:0.23:90
chr10	62029934	rs71495633	G	C	3911.77	.	AC=1;AF=0.500;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	0/1:201,190:0.49:391
chr10	62039654	rs1380451	G	C	2110.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:73,90:0.55:163
chr10	62375033	rs1837947	A	G	1948.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.980;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=1.172;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.95;ReadPosRankSum=-0.312;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:81,97:0.54:178
chr10	62539788	rs2260179	C	G	454.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:9,19:0.68:28
chr10	62540063	rs2448344	T	A	511.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr10	62548098	rs2456772	G	C	2196.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr10	62551815	rs3212319	GC	G	7971.73	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr10	62551889	rs2456777	AA	GT	12225.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr10	62553763	rs1871446	A	G	1654.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr10	62632162	rs76522289	C	T	738.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:36,35:0.49:71
chr10	62634621	rs2279942	C	T	2573.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:111,113:0.50:224
chr10	62645873	rs2271128	A	G	7961.77	.	AC=1;AF=0.500;AN=2;DB;DP=804;set=Intersection	GT:AD:AF:DP	0/1:403,398:0.50:801
chr10	62652863	rs11304357	TA	T	320.73	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:11,23:0.68:34
chr10	62671305	rs2271126	G	A	9055.77	.	AC=1;AF=0.500;AN=2;DB;DP=829;set=Intersection	GT:AD:AF:DP	0/1:391,418:0.52:809
chr10	63212885	rs181800713	G	T	918.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:49,47:0.49:96
chr10	63422754	rs151189963	G	GGGGCCGACCCCGGCA	7380.73	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr10	63519674	rs2588915	G	A	1573.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:85,71:0.46:156
chr10	63520698	rs1992625	T	C	2316.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:96,107:0.53:203
chr10	63699895	rs7073837	A	C	8735.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:0,319:1.00:319
chr10	63700228	rs4360655	A	T	2415.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr10	63700245	rs4562771	A	G	1767.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr10	63760087	.	CT	C	284.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.376;ClippingRankSum=0.000;DP=160;ExcessHet=3.0103;FS=5.806;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.508;QD=2.28;ReadPosRankSum=0.932;SOR=0.220;set=HC	GT:AD:AF:DP	0/1:85,40:0.32:125
chr10	63760113	rs140363921	T	C	1147.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:57,46:0.45:103
chr10	63817096	rs34466257	G	A	824.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:46,41:0.47:87
chr10	63943986	rs11297358	GT	G	693.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:6,22:0.79:28
chr10	63944176	rs3125730	A	C	3701.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr10	63944188	rs7903510	A	G	1402.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:72,71:0.50:143
chr10	63974950	rs4559572	C	G	204.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr10	63977011	rs148142088	GAAAAA	G,GAAAAAA	6732.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.279;ClippingRankSum=0.000;DB;DP=362;ExcessHet=3.0103;FS=1.100;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.18;MQRankSum=0.570;QD=25.50;ReadPosRankSum=-0.628;SOR=0.924;set=HC	GT:AD:AF:DP	1/2:23,178,63:0.67,0.24:264
chr10	63977069	rs1432414	A	T	2313.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:50,96:0.66:146
chr10	63977980	rs61850830	C	T	2050.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:85,101:0.54:186
chr10	63978077	rs11355398	GA	G	514.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.358;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.15;ReadPosRankSum=1.113;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:34,38:0.53:72
chr10	63982984	rs10740069	A	G	1189.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:42,52:0.55:94
chr10	63995983	rs3852448	C	T	2607.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr10	64000878	rs1368158	T	G	987.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:42,48:0.53:90
chr10	64001114	rs1368157	T	C	211.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr10	64005582	rs34205992	T	TA	141.73	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:9,8:0.47:17
chr10	64005711	rs3815999	C	T	1436.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:87,73:0.46:160
chr10	64019037	rs10675790	A	ATAAAT	1520.73	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:39,38:0.49:77
chr10	64136751	rs1873686	G	C	727.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr10	64148125	rs3852424	C	A	9544.77	.	AC=2;AF=1.00;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	1/1:0,365:1.00:365
chr10	64148369	rs2893897	A	G	1536.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr10	64159333	rs3758490	G	T	12370.77	.	AC=2;AF=1.00;AN=2;DB;DP=462;set=Intersection	GT:AD:AF:DP	1/1:0,459:1.00:459
chr10	64415184	rs7076156	A	G	6865.77	.	AC=1;AF=0.500;AN=2;DB;DP=688;set=Intersection	GT:AD:AF:DP	0/1:340,340:0.50:680
chr10	64415413	rs7094595	T	A	1973.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:79,79:0.50:158
chr10	64564892	rs2236295	G	T	2098.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.836;ClippingRankSum=0.000;DB;DP=199;ExcessHet=3.0103;FS=1.902;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.71;ReadPosRankSum=-0.545;SOR=0.854;set=HC	GT:AD:AF:DP	0/1:104,92:0.47:196
chr10	64564934	rs10995311	C	G	3736.77	.	AC=1;AF=0.500;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	0/1:178,184:0.51:362
chr10	64573771	rs224083	C	T	5881.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr10	64893433	rs2175197	T	C	3345.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr10	64914016	rs35751397	T	TA	973.73	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:50,35:0.41:85
chr10	64927823	rs1935	C	G	2760.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:153,143:0.48:296
chr10	64937314	rs35854283	G	A	99.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:8,5:0.38:13
chr10	64944317	rs10740107	T	A	8132.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr10	64945364	rs3211105	G	A	6666.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr10	64953311	rs4747098	G	A	1188.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr10	64953959	rs2306264	C	G	517.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:29,26:0.47:55
chr10	64960536	rs10465990	G	A	2377.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr10	64967445	rs1904294	A	T	22603.77	.	AC=2;AF=1.00;AN=2;DB;DP=827;set=Intersection	GT:AD:AF:DP	1/1:1,808:1.00:809
chr10	64974537	rs10761725	A	T	6674.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:1,245:1.00:246
chr10	65139945	rs7477425	T	C	2321.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr10	65225244	rs1061259	GA	CG	14067.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr10	65225450	rs1054693	C	T	10359.77	.	AC=1;AF=0.500;AN=2;DB;DP=965;set=Intersection	GT:AD:AF:DP	0/1:459,490:0.52:949
chr10	65281137	rs377532429	T	C	514.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.60;SOR=5.283;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr10	65322464	rs36027145	A	ATCAG	5764.73	.	AC=1;AF=0.500;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	0/1:175,158:0.47:333
chr10	65380751	rs74137774	T	G	769.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:43,34:0.44:77
chr10	65383515	.	A	ATGTG	411.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.416;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.72;ReadPosRankSum=1.584;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:11,11:0.50:22
chr10	65928826	rs10740151	T	C	7998.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr10	67726514	rs2105702	A	C	7214.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr10	68040325	rs4548513	C	T	3508.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr10	68685929	rs7902006	G	C	10363.77	.	AC=2;AF=1.00;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	1/1:0,364:1.00:364
chr10	69583206	rs962608	G	A	4580.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr10	69647332	rs932657	G	T	2521.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr10	69648569	rs2236318	T	A	852.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:79,43:0.35:122
chr10	69651125	rs7896005	A	G	2427.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:117,112:0.49:229
chr10	69668014	rs10997870	G	T	206.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:11,9:0.45:20
chr10	69692330	rs3758392	T	C	3271.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:110,146:0.57:256
chr10	69699478	rs142773200	GAT	G	126.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.402;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.87;ReadPosRankSum=-1.448;SOR=0.518;set=HC	GT:AD:AF:DP	0/1:19,7:0.27:26
chr10	69719074	rs7907843	C	T	556.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr10	69750213	rs11422655	G	GAA	610.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.505;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=7.892;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.54;ReadPosRankSum=2.965;SOR=2.494;set=HC	GT:AD:AF:DP	0/1:8,34:0.81:42
chr10	69750788	rs5785841	GA	G	6845.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.825;ClippingRankSum=0.000;DB;DP=502;ExcessHet=3.0103;FS=2.142;MLEAC=2;MLEAF=1.000;MQ=60.17;MQRankSum=0.781;QD=16.26;ReadPosRankSum=-0.516;SOR=0.462;set=HC	GT:AD:AF:DP	1/1:40,381:0.90:421
chr10	69755112	rs2308195	C	CCTAT	627.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr10	69773841	rs866255	G	A	4306.77	.	AC=1;AF=0.500;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	0/1:177,203:0.53:380
chr10	69792721	rs3758393	T	C	663.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:32,33:0.51:65
chr10	69799072	rs5785844	CA	C	141.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=4.377;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.95;ReadPosRankSum=0.350;SOR=0.187;set=HC	GT:AD:AF:DP	0/1:27,21:0.44:48
chr10	69902549	rs3814180	T	C	591.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:29,23:0.44:52
chr10	69909802	rs10997948	G	A	7482.77	.	AC=1;AF=0.500;AN=2;DB;DP=680;set=Intersection	GT:AD:AF:DP	0/1:323,349:0.52:672
chr10	69909899	rs7096613	G	A	4837.77	.	AC=1;AF=0.500;AN=2;DB;DP=479;set=Intersection	GT:AD:AF:DP	0/1:237,231:0.49:468
chr10	69926097	rs2673794	T	C	5666.77	.	AC=1;AF=0.500;AN=2;DB;DP=514;set=Intersection	GT:AD:AF:DP	0/1:249,261:0.51:510
chr10	69926319	rs61854624	C	A	9506.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.887;ClippingRankSum=0.000;DB;DP=577;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.86;ReadPosRankSum=0.351;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:305,259:0.46:564
chr10	69926325	rs2673793	C	T	9419.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.776;ClippingRankSum=0.000;DB;DP=567;ExcessHet=3.0103;FS=0.524;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.00;ReadPosRankSum=0.088;SOR=0.762;set=HC	GT:AD:AF:DP	0/1:299,255:0.46:554
chr10	69934467	rs3814183	A	G	1970.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:105,85:0.45:190
chr10	69934535	rs7917519	G	A	495.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:36,24:0.40:60
chr10	69935059	rs7097776	A	G	7480.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr10	69935235	rs6480306	T	C	7769.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr10	69948844	rs10733838	T	C	7073.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr10	69954301	rs11815154	C	T	1366.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:55,57:0.51:112
chr10	69955140	rs7069569	T	A	1729.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:75,85:0.53:160
chr10	69956998	.	T	TA	70	.	AC=1;AF=0.500;AN=2;BRF=0.33;FR=0.5000;HP=1;HapScore=4;MGOF=3;MMLQ=27;MQ=60.0;NF=5;NR=0;PP=70;QD=19.2;SC=CTTTCCCCCTTCAAAAAAAAA;SbPval=1.0;Source=Platypus;TC=17;TCF=13;TCR=4;TR=5;WE=69957007;WS=69956988;set=Platypus	GT:AD:AF:DP	1/0:12,5:0.29:17
chr10	69956999	rs7477844	C	A	38.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.496;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=5.651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.04;ReadPosRankSum=-0.321;SOR=0.090;set=HC	GT:AD:AF:DP	0/1:14,5:0.26:19
chr10	69957375	rs7095492	C	T	289.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:12,13:0.52:25
chr10	69959097	rs7079549	G	T	3668.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr10	69959460	rs12358413	T	C	642.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:37,32:0.46:69
chr10	69961470	rs7913133	A	G	643.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:22,29:0.57:51
chr10	69961501	rs7913146	A	G	2271.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr10	69966392	rs3814185	T	G	832.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr10	70043916	rs736535	G	A	3543.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:166,168:0.50:334
chr10	70044031	rs4142048	T	C	4483.77	.	AC=1;AF=0.500;AN=2;DB;DP=455;set=Intersection	GT:AD:AF:DP	0/1:225,226:0.50:451
chr10	70045201	rs7909365	C	A	9011.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:0,329:1.00:329
chr10	70045264	rs3816299	A	C	1668.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:69,69:0.50:138
chr10	70051808	rs11387118	G	GA	903.73	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:46,51:0.53:97
chr10	70051810	rs3835100	A	G	1152.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:57,49:0.46:106
chr10	70051928	rs10823171	A	G	2560.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:153,133:0.47:286
chr10	70055967	.	TA	T	82.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.649;ClippingRankSum=0.000;DP=153;ExcessHet=3.0103;FS=5.943;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.58;ReadPosRankSum=0.907;SOR=0.464;set=HC	GT:AD:AF:DP	0/1:117,26:0.18:143
chr10	70056600	rs2394470	C	T	1403.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:66,63:0.49:129
chr10	70099433	rs76636639	A	G	205.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:15,11:0.42:26
chr10	70105560	rs1162753	G	A	6008.77	.	AC=1;AF=0.500;AN=2;DB;DP=615;set=Intersection	GT:AD:AF:DP	0/1:314,295:0.48:609
chr10	70123243	rs10823183	G	A	468.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:25,23:0.48:48
chr10	70143774	rs7899885	C	T	2312.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:95,108:0.53:203
chr10	70152683	rs11432211	C	CA	56.50	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.345;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.67;MQRankSum=0.385;QD=4.35;ReadPosRankSum=1.275;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:6,7:0.54:13
chr10	70153014	rs11432212	C	CA	108.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:14,9:0.39:23
chr10	70166913	rs59831114	T	G	3988.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr10	70167004	rs7098448	T	C	1320.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:35,58:0.62:93
chr10	70167044	rs138151791	C	T	853.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:20,38:0.66:58
chr10	70174707	rs1801041	T	A	750.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:44,38:0.46:82
chr10	70174885	rs17460571	A	G	455.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:10,17:0.63:27
chr10	70174962	rs72035454	CA	C	94.73	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:4,8:0.67:12
chr10	70179713	rs7912227	C	G	4616.77	.	AC=1;AF=0.500;AN=2;DB;DP=451;set=Intersection	GT:AD:AF:DP	0/1:223,222:0.50:445
chr10	70179746	rs7897488	T	G	2744.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:148,133:0.47:281
chr10	70190155	rs12221039	A	G	364.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:28,19:0.40:47
chr10	70204516	rs4237318	G	T	171.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.820;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.52;MQRankSum=0.967;QD=14.31;ReadPosRankSum=0.129;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:4,8:0.67:12
chr10	70205920	rs61316500	C	CA	495.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.142;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.58;MQRankSum=1.693;QD=9.01;ReadPosRankSum=-0.422;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:26,29:0.53:55
chr10	70225504	rs3758626	G	T	6624.77	.	AC=1;AF=0.500;AN=2;DB;DP=607;set=Intersection	GT:AD:AF:DP	0/1:291,312:0.52:603
chr10	70227964	rs10998205	C	T	3425.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:165,165:0.50:330
chr10	70230475	rs10509302	G	C	2448.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:110,120:0.52:230
chr10	70231701	rs1535539	A	G	8094.77	.	AC=1;AF=0.500;AN=2;DB;DP=767;set=Intersection	GT:AD:AF:DP	0/1:395,365:0.48:760
chr10	70252822	rs11288507	GA	G	143.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.484;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=4.786;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.82;ReadPosRankSum=-1.538;SOR=0.245;set=HC	GT:AD:AF:DP	0/1:32,19:0.37:51
chr10	70263579	rs10823215	C	T	448.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:19,19:0.50:38
chr10	70266523	rs2275715	C	T	251.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:17,12:0.41:29
chr10	70266546	rs2275716	G	T	211.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:8,10:0.56:18
chr10	70266548	.	T	C	170.77	.	AC=1;AF=0.500;AN=2;DP=18;set=Intersection	GT:AD:AF:DP	0/1:9,8:0.47:17
chr10	70276728	rs2664412	G	A	1081.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr10	70332066	rs3814177	C	T	917.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:46,39:0.46:85
chr10	70332672	rs12773594	T	A	5689.77	.	AC=1;AF=0.500;AN=2;DB;DP=523;set=Intersection	GT:AD:AF:DP	0/1:248,266:0.52:514
chr10	70332862	rs12221107	C	T	4004.77	.	AC=1;AF=0.500;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	0/1:273,198:0.42:471
chr10	70392319	rs10733844	G	A	3241.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr10	70392375	rs1747	G	A	1997.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:117,95:0.45:212
chr10	70392470	rs114946478	G	A	1201.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.567;ClippingRankSum=0.000;DB;DP=494;ExcessHet=3.0103;FS=0.625;MLEAC=1;MLEAF=0.500;MQ=58.59;MQRankSum=0.831;QD=2.46;ReadPosRankSum=3.650;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:380,109:0.22:489
chr10	70405237	rs12241767	G	A	4786.77	.	AC=1;AF=0.500;AN=2;DB;DP=525;set=Intersection	GT:AD:AF:DP	0/1:291,222:0.43:513
chr10	70405539	rs16925541	A	G	4667.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:164,193:0.54:357
chr10	70405855	rs3998860	A	G	7061.77	.	AC=1;AF=0.500;AN=2;DB;DP=700;set=Intersection	GT:AD:AF:DP	0/1:357,333:0.48:690
chr10	70406864	rs36081642	C	T	1027.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:46,41:0.47:87
chr10	70411536	rs12243354	G	A	837.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:50,40:0.44:90
chr10	70442868	rs11284778	GA	G	386.73	.	AC=1;AF=0.500;AN=2;DB;DP=45;MQ=60.24;set=Intersection	GT:AD:AF:DP	0/1:17,24:0.59:41
chr10	70481547	rs1616158	C	T	917.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:46,38:0.45:84
chr10	70497482	rs1162961	A	G	656.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr10	70497799	rs1149679	C	T	1137.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr10	70502288	rs1300253	G	A	11431.77	.	AC=2;AF=1.00;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	1/1:0,421:1.00:421
chr10	70502426	rs1300252	T	C	1373.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr10	70506902	rs374748155	C	CT	1150.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.786;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=0.605;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.70;ReadPosRankSum=0.189;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:117,85:0.42:202
chr10	70508874	rs34521154	T	C	3425.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:124,156:0.56:280
chr10	70520636	rs58477996	CAAA	C,CA	1259.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=26.80;SOR=0.984;set=HC	GT:AD:AF:DP	1/2:6,28,13:0.60,0.28:47
chr10	70525591	rs1149688	G	A	1154.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:55,53:0.49:108
chr10	70531217	rs10823258	C	T	1196.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.730;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=2.990;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.82;ReadPosRankSum=1.261;SOR=0.471;set=HC	GT:AD:AF:DP	0/1:91,62:0.41:153
chr10	70532990	rs12570981	G	A	140.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr10	70534744	rs1782323	A	C	1647.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:1,65:0.98:66
chr10	70546223	rs36124907	C	T	390.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:32,21:0.40:53
chr10	70547888	rs151259644	TTTATA	T	4554.73	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:110,121:0.52:231
chr10	70641860	rs1341667	T	C	4169.77	.	AC=1;AF=0.500;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	0/1:205,182:0.47:387
chr10	70645107	rs10509304	C	T	4976.77	.	AC=1;AF=0.500;AN=2;DB;DP=479;set=Intersection	GT:AD:AF:DP	0/1:238,230:0.49:468
chr10	70645376	rs10509305	A	C	5891.77	.	AC=1;AF=0.500;AN=2;DB;DP=643;set=Intersection	GT:AD:AF:DP	0/1:336,293:0.47:629
chr10	70645697	rs10509306	C	T	7137.77	.	AC=1;AF=0.500;AN=2;DB;DP=741;set=Intersection	GT:AD:AF:DP	0/1:391,346:0.47:737
chr10	70652272	rs4472827	G	A	367.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:24,17:0.41:41
chr10	70669942	rs35271752	CA	C	109.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.452;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=1.545;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.49;ReadPosRankSum=2.254;SOR=1.244;set=HC	GT:AD:AF:DP	0/1:28,16:0.36:44
chr10	70673430	rs5030891	G	A	827.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:31,36:0.54:67
chr10	70696009	rs7084726	T	C	2298.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr10	70696713	rs5030895	C	T	520.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr10	70696908	rs1539166	G	T	2696.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:1,104:0.99:105
chr10	70700944	rs5030900	A	G	1892.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:104,92:0.47:196
chr10	70716106	rs5030896	A	G	8687.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:0,319:1.00:319
chr10	70722939	rs5030897	T	C	1240.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:38,48:0.56:86
chr10	70723857	.	G	GA	261.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.219;ClippingRankSum=0.000;DP=166;ExcessHet=3.0103;FS=3.314;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.88;ReadPosRankSum=0.427;SOR=1.129;set=HC	GT:AD:AF:DP	0/1:99,40:0.29:139
chr10	70725128	rs3898314	A	G	3297.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:113,149:0.57:262
chr10	70730197	rs17471610	C	G	535.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:14,21:0.60:35
chr10	70733266	rs5030899	T	G	1082.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:57,48:0.46:105
chr10	70734589	rs3740595	T	A	5878.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.906;ClippingRankSum=0.000;DB;DP=234;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.56;ReadPosRankSum=-0.725;SOR=0.822;set=HC	GT:AD:AF:DP	1/1:3,227:0.99:230
chr10	70734599	rs5030902	A	T	4422.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.617;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=2.642;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.28;ReadPosRankSum=-0.310;SOR=0.318;set=HC	GT:AD:AF:DP	1/1:2,188:0.99:190
chr10	70742192	rs2251911	T	G	363.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:20,18:0.47:38
chr10	70856852	rs2229498	G	A	6061.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr10	70951565	.	A	AT	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.989;ClippingRankSum=0.000;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.922;QD=0.50;ReadPosRankSum=-0.494;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:54,13:0.19:67
chr10	70962149	.	G	GA	110.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.971;ClippingRankSum=0.000;DP=205;ExcessHet=3.0103;FS=4.102;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=3.640;QD=0.58;ReadPosRankSum=-1.167;SOR=0.377;set=HC	GT:AD:AF:DP	0/1:160,32:0.17:192
chr10	70962381	rs2279928	C	G	8526.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:2,305:0.99:307
chr10	70968199	rs4746821	G	T	2182.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:1,70:0.99:71
chr10	70992413	rs874557	G	A	179.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:9,9:0.50:18
chr10	70992634	rs35746503	C	T	4136.77	.	AC=1;AF=0.500;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	0/1:194,202:0.51:396
chr10	70992664	rs874556	C	T	4699.77	.	AC=1;AF=0.500;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	0/1:193,226:0.54:419
chr10	70992912	rs5030970	A	T	2715.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:122,129:0.51:251
chr10	70992949	rs5030971	T	A	2378.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:85,71:0.46:156
chr10	70992970	rs5030972	G	A	2158.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:62,56:0.47:118
chr10	70998738	rs4145930	G	A	6186.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr10	71005807	rs41279650	G	A	1801.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:90,87:0.49:177
chr10	71010026	rs4745978	T	C	2321.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr10	71010375	rs5030948	C	T	4432.77	.	AC=1;AF=0.500;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	0/1:168,199:0.54:367
chr10	71016947	rs2279930	C	G	3793.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:147,170:0.54:317
chr10	71018660	rs1111335	T	C	4298.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr10	71026510	rs906219	C	A	3761.77	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:157,180:0.53:337
chr10	71026651	.	G	A	890.77	.	AC=1;AF=0.500;AN=2;DP=75;set=Intersection	GT:AD:AF:DP	0/1:37,37:0.50:74
chr10	71048561	rs184417904	T	A	1653.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:79,82:0.51:161
chr10	71052083	rs4746836	C	T	4403.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr10	71055232	rs2894081	T	C	141.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:3,6:0.67:9
chr10	71055459	rs4746837	T	C	1175.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.127;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=0.660;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.52;ReadPosRankSum=0.284;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:77,61:0.44:138
chr10	71060610	rs906220	A	G	5188.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr10	71060634	rs906221	G	A	5187.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr10	71060696	rs906222	G	A	2880.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr10	71060707	rs906223	T	A	2540.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr10	71098195	rs906216	G	T	807.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.108;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.98;ReadPosRankSum=-1.653;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:47,43:0.48:90
chr10	71098295	rs7912524	T	A	1688.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:72,84:0.54:156
chr10	71098351	rs75743765	G	A	771.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:34,36:0.51:70
chr10	71098436	rs10578071	AGT	A	127.87	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr10	71103597	rs1133189	C	G	1460.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:67,60:0.47:127
chr10	71128545	rs12359036	A	G	143.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:11,8:0.42:19
chr10	71142420	rs748235	G	A	12647.77	.	AC=2;AF=1.00;AN=2;DB;DP=465;set=Intersection	GT:AD:AF:DP	1/1:0,462:1.00:462
chr10	71144702	rs749105	G	A	3634.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr10	71152091	rs2278745	T	C	2302.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:93,104:0.53:197
chr10	71158268	rs1227938	C	T	1854.73	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:101,97:0.49:198
chr10	71167119	rs10998762	G	A	3144.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:163,149:0.48:312
chr10	71168620	.	GCCAGCCCCCCGCCCCCTCCAGGCCCCGCCCCCT	G	449.73	.	AC=1;AF=0.500;AN=2;DP=53;set=Intersection	GT:AD:AF:DP	0/1:19,16:0.46:35
chr10	71168685	rs55953810	A	T	2700.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:1,99:0.99:100
chr10	71168945	rs1549797	C	G	956.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:20,33:0.62:53
chr10	71174636	rs150956058	TAC	T	653.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.694;ClippingRankSum=0.000;DB;DP=973;ExcessHet=3.0103;FS=0.861;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=2.846;QD=0.69;ReadPosRankSum=2.423;SOR=0.590;set=HC	GT:AD:AF:DP	0/1:846,101:0.11:947
chr10	71175609	rs10998765	T	C	698.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:17,29:0.63:46
chr10	71176012	rs5030920	A	G	3801.77	.	AC=1;AF=0.500;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	0/1:228,180:0.44:408
chr10	71243323	rs10823396	C	G	402.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:26,21:0.45:47
chr10	71244832	rs2305201	C	A	3177.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:144,152:0.51:296
chr10	71263991	rs5785921	G	GT	639.73	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:42,35:0.45:77
chr10	71264325	rs1652804	G	A	3493.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:129,157:0.55:286
chr10	71267411	rs201904794	T	TG	136.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.661;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=2.638;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.04;ReadPosRankSum=1.663;SOR=1.204;set=HC	GT:AD:AF:DP	0/1:52,15:0.22:67
chr10	71267412	rs1665583	T	G	222.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.869;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=3.583;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.32;ReadPosRankSum=2.266;SOR=1.174;set=HC	GT:AD:AF:DP	0/1:44,23:0.34:67
chr10	71267417	rs3750790	T	G	229.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.552;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=2.345;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.83;ReadPosRankSum=1.788;SOR=1.159;set=HC	GT:AD:AF:DP	0/1:37,23:0.38:60
chr10	71332204	rs4536103	A	G	9441.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:0,339:1.00:339
chr10	71332842	rs144643855	CTG	C	1580.73	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:54,44:0.45:98
chr10	71390266	.	G	A	840.77	.	AC=1;AF=0.500;AN=2;DP=76;set=Intersection	GT:AD:AF:DP	0/1:34,37:0.52:71
chr10	71390393	rs977096	A	G	2828.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:165,140:0.46:305
chr10	71391538	rs1381932	T	C	3761.77	.	AC=1;AF=0.500;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	0/1:184,184:0.50:368
chr10	71391707	rs2262274	C	T	2235.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:61,68:0.53:129
chr10	71391719	rs144716370	C	CTGGGTAAGACT	2016.73	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:54,54:0.50:108
chr10	71392495	rs2616089	T	A	2587.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.009;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=2.070;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.97;ReadPosRankSum=1.697;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:93,69:0.43:162
chr10	71392501	rs2616088	G	C	2920.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.197;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=1.172;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.62;ReadPosRankSum=-0.310;SOR=0.585;set=HC	GT:AD:AF:DP	0/1:102,85:0.45:187
chr10	71392557	rs12020	C	T	3020.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:162,143:0.47:305
chr10	71392692	rs1052152	T	C	4273.77	.	AC=1;AF=0.500;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	0/1:186,200:0.52:386
chr10	71562437	rs10998973	G	A	1372.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:180,77:0.30:257
chr10	71620388	rs10762320	G	A	3667.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr10	71620403	rs10823443	G	A	2511.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:56,115:0.67:171
chr10	71620436	rs67173564	A	AC	8005.73	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr10	71620532	rs12573749	G	A	2456.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;MQ=60.05;set=Intersection	GT:AD:AF:DP	0/1:88,116:0.57:204
chr10	71620671	rs4341432	C	G	1312.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr10	71634969	rs59942449	G	A	3959.77	.	AC=1;AF=0.500;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	0/1:177,182:0.51:359
chr10	71634986	rs59126631	A	T	2724.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:129,126:0.49:255
chr10	71637905	rs10823446	C	A	3405.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr10	71647169	rs11813062	C	T	1202.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:65,60:0.48:125
chr10	71647196	rs35268667	GT	G	679.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.587;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=0.767;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.000;QD=5.48;ReadPosRankSum=0.224;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:69,55:0.44:124
chr10	71647223	rs11816811	A	C	1563.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:64,73:0.53:137
chr10	71647298	rs10999011	G	A	842.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:47,39:0.45:86
chr10	71649046	rs10999015	G	A	1402.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr10	71649309	rs2683572	A	G	4034.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:2,150:0.99:152
chr10	71655443	rs1227744	G	A	6562.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr10	71657272	rs1227746	A	G	22611.77	.	AC=2;AF=1.00;AN=2;DB;DP=840;set=Intersection	GT:AD:AF:DP	1/1:0,837:1.00:837
chr10	71658512	rs1227747	G	A	25130.77	.	AC=2;AF=1.00;AN=2;DB;DP=956;set=Intersection	GT:AD:AF:DP	1/1:0,953:1.00:953
chr10	71662783	rs942576	G	T	815.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr10	71665676	rs2683575	G	C	1486.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr10	71685532	rs1227778	G	C	5252.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr10	71686677	rs2274178	G	A	981.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.348;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.64;ReadPosRankSum=1.146;SOR=0.591;set=HC	GT:AD:AF:DP	0/1:30,42:0.58:72
chr10	71686905	rs3215785	CG	C	1983.73	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:117,85:0.42:202
chr10	71689645	rs2763339	T	G	2490.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:1,90:0.99:91
chr10	71689966	rs59283631	TG	T	2439.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr10	71689968	rs115514231	G	A	2448.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr10	71692556	rs7094009	C	G	3421.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr10	71703995	rs3750780	A	G	948.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:57,43:0.43:100
chr10	71712502	rs3750779	C	T	264.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.473;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=2.187;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.59;ReadPosRankSum=2.082;SOR=0.260;set=HC	GT:AD:AF:DP	0/1:11,14:0.56:25
chr10	71716639	rs4746939	C	T	1609.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:69,73:0.51:142
chr10	71849772	rs16927265	A	G	6156.77	.	AC=1;AF=0.500;AN=2;DB;DP=704;set=Intersection	GT:AD:AF:DP	0/1:387,309:0.44:696
chr10	71851429	rs72075869	CA	C	482.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.422;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=0.923;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=1.440;QD=4.88;ReadPosRankSum=0.193;SOR=0.938;set=HC	GT:AD:AF:DP	0/1:41,58:0.59:99
chr10	71868763	rs2271698	G	A	6598.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr10	71876382	rs2394656	C	T	3083.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr10	71880757	rs4746962	A	C	10836.77	.	AC=2;AF=1.00;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	1/1:0,403:1.00:403
chr10	71905569	rs3750774	C	A	3513.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:130,152:0.54:282
chr10	71905695	rs10999158	A	G	7916.77	.	AC=1;AF=0.500;AN=2;DB;DP=769;set=Intersection	GT:AD:AF:DP	0/1:375,379:0.50:754
chr10	71906150	rs4746970	T	C	3526.77	.	AC=1;AF=0.500;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	0/1:180,165:0.48:345
chr10	71920975	.	T	C	495.77	.	AC=1;AF=0.500;AN=2;DP=43;set=Intersection	GT:AD:AF:DP	0/1:19,21:0.53:40
chr10	71921591	rs2271690	G	A	1251.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:80,63:0.44:143
chr10	71970259	rs3969945	G	A	630.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:19,26:0.58:45
chr10	71974468	rs7911572	C	T	2891.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr10	71989884	rs9415958	T	C	127.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:21,9:0.30:30
chr10	71990196	rs7904074	G	A	317.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:24,17:0.41:41
chr10	71993094	rs7077538	T	G	3989.77	.	AC=1;AF=0.500;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	0/1:174,191:0.52:365
chr10	72015409	rs10999212	C	A	4999.77	.	AC=1;AF=0.500;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	0/1:197,225:0.53:422
chr10	72026279	rs3812697	G	C	1973.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr10	72037687	rs35789490	T	TG	5688.73	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr10	72043389	rs1889394	T	G	16875.77	.	AC=2;AF=1.00;AN=2;DB;DP=630;set=Intersection	GT:AD:AF:DP	1/1:0,629:1.00:629
chr10	72043460	rs10999239	T	G	2979.77	.	AC=1;AF=0.500;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	0/1:191,142:0.43:333
chr10	72061079	rs10740336	C	T	1933.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr10	72061361	rs35359681	G	A	2064.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:102,97:0.49:199
chr10	72061420	rs4746997	A	G	2744.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr10	72083835	rs3750764	C	A	1606.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:67,71:0.51:138
chr10	72164470	rs3750766	C	T	113.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.317;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.55;ReadPosRankSum=0.000;SOR=0.459;set=HC	GT:AD:AF:DP	0/1:16,9:0.36:25
chr10	72179746	rs1043098	C	T	5932.77	.	AC=1;AF=0.500;AN=2;DB;DP=717;set=Intersection	GT:AD:AF:DP	0/1:411,297:0.42:708
chr10	72181460	rs3793809	G	T	3002.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr10	72195439	rs1904589	T	C	4385.77	.	AC=1;AF=0.500;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	0/1:165,201:0.55:366
chr10	72201219	rs10999338	G	A	1315.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:56,64:0.53:120
chr10	72207517	rs34717077	AC	A	3577.73	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr10	72288900	rs10999377	G	A	2033.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr10	72288964	.	GCCCC	G,GC	3099.73	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;BaseQRankSum=0.563;ClippingRankSum=0.000;DP=153;ExcessHet=3.0103;FS=9.576;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=34.44;ReadPosRankSum=1.223;SOR=5.640;set=HC	GT:AD:AF:DP	1/2:2,58,30:0.64,0.33:90
chr10	72288969	.	C	A	482.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-3.707;ClippingRankSum=0.000;DP=147;ExcessHet=3.0103;FS=10.408;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.49;ReadPosRankSum=-1.154;SOR=2.877;set=HC	GT:AD:AF:DP	0/1:58,30:0.34:88
chr10	72288970	.	C	A	715.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.261;ClippingRankSum=0.000;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.87;ReadPosRankSum=-0.281;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:52,39:0.43:91
chr10	72288971	.	C	A	78.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.164;ClippingRankSum=0.000;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.84;ReadPosRankSum=2.114;SOR=0.355;set=HC	GT:AD:AF:DP	0/1:80,14:0.15:94
chr10	72289126	rs10823560	T	C	1681.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr10	72289701	rs2275059	G	A	8609.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr10	72293850	rs869574	C	T	978.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:61,47:0.44:108
chr10	72298631	rs1122918	T	C	18840.77	.	AC=2;AF=1.00;AN=2;DB;DP=694;set=Intersection	GT:AD:AF:DP	1/1:0,689:1.00:689
chr10	72300743	rs12776085	C	G	961.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:68,49:0.42:117
chr10	72307101	rs3740447	C	T	9520.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	1/1:1,354:1.00:355
chr10	72324143	rs7093516	A	G	6412.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr10	72326163	rs4747057	G	C	1487.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr10	72359091	rs142514800	G	A	236.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:21,11:0.34:32
chr10	72360038	rs10999426	G	A	2609.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:144,124:0.46:268
chr10	72360059	rs10999427	C	T	3385.77	.	AC=1;AF=0.500;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	0/1:192,159:0.45:351
chr10	72360081	rs59377580	C	T	5183.77	.	AC=1;AF=0.500;AN=2;DB;DP=480;set=Intersection	GT:AD:AF:DP	0/1:219,250:0.53:469
chr10	72434194	rs614201	G	A	4248.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:1,145:0.99:146
chr10	72462367	rs61852880	C	T	367.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:21,19:0.47:40
chr10	72490102	rs7895554	C	T	2521.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:95,111:0.54:206
chr10	72492155	rs41277996	G	C	3903.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:146,167:0.53:313
chr10	72492212	rs2587478	T	C	4738.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr10	72492244	rs10740357	A	C	1389.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:40,54:0.57:94
chr10	72493876	rs10740358	T	C	2067.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:92,102:0.53:194
chr10	72493916	rs61852887	C	T	1273.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:53,57:0.52:110
chr10	72494778	rs12765664	G	A	3178.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr10	72496375	rs1861517	A	G	3786.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr10	72500763	rs10823607	T	C	12777.77	.	AC=2;AF=1.00;AN=2;DB;DP=491;set=Intersection	GT:AD:AF:DP	1/1:0,487:1.00:487
chr10	72500863	rs10999500	C	G	3717.77	.	AC=1;AF=0.500;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	0/1:174,179:0.51:353
chr10	72503344	rs10999502	G	A	5373.77	.	AC=1;AF=0.500;AN=2;DB;DP=483;set=Intersection	GT:AD:AF:DP	0/1:223,253:0.53:476
chr10	72504920	rs10999505	C	T	450.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:20,20:0.50:40
chr10	72505208	rs7907248	A	G	905.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.414;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=1.601;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.63;ReadPosRankSum=0.506;SOR=0.904;set=HC	GT:AD:AF:DP	0/1:59,46:0.44:105
chr10	72505243	rs7923892	T	C	689.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.313;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=1.718;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.26;ReadPosRankSum=-1.782;SOR=0.960;set=HC	GT:AD:AF:DP	0/1:56,39:0.41:95
chr10	72505315	rs2791183	A	G	516.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:7,23:0.77:30
chr10	72511778	rs10999511	T	C	2262.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:82,96:0.54:178
chr10	72513635	rs12774070	C	A	3176.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:150,154:0.51:304
chr10	72513682	rs2587475	C	T	2614.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:144,129:0.47:273
chr10	72517837	rs6480463	C	T	2308.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:94,104:0.53:198
chr10	72520259	rs61573157	C	T	11263.77	.	AC=1;AF=0.500;AN=2;DB;DP=1061;set=Intersection	GT:AD:AF:DP	0/1:528,526:0.50:1054
chr10	72520330	rs10823615	A	G	11424.77	.	AC=1;AF=0.500;AN=2;DB;DP=1134;set=Intersection	GT:AD:AF:DP	0/1:567,550:0.49:1117
chr10	72520567	rs10823616	A	G	5578.77	.	AC=1;AF=0.500;AN=2;DB;DP=644;set=Intersection	GT:AD:AF:DP	0/1:361,267:0.43:628
chr10	72532238	rs2253801	T	C	3433.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:135,157:0.54:292
chr10	72533910	rs7077672	C	T	1770.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr10	72535007	rs2254174	C	T	15830.77	.	AC=2;AF=1.00;AN=2;DB;DP=588;set=Intersection	GT:AD:AF:DP	1/1:0,578:1.00:578
chr10	72535065	rs10823619	A	G	4900.77	.	AC=1;AF=0.500;AN=2;DB;DP=495;set=Intersection	GT:AD:AF:DP	0/1:251,236:0.48:487
chr10	72536288	rs7897034	T	C	561.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:40,29:0.42:69
chr10	72536779	rs2254422	A	C	3339.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr10	72536849	rs10999537	C	T	2862.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:154,137:0.47:291
chr10	72537450	rs2254445	T	C	2891.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr10	72604263	rs12770335	G	T	2924.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:168,148:0.47:316
chr10	72619205	rs827255	C	T	14936.77	.	AC=2;AF=1.00;AN=2;DB;DP=571;set=Intersection	GT:AD:AF:DP	1/1:0,562:1.00:562
chr10	72620134	.	C	CT	77.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.836;ClippingRankSum=0.000;DP=123;ExcessHet=3.0103;FS=3.501;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.000;QD=0.70;ReadPosRankSum=1.865;SOR=0.936;set=HC	GT:AD:AF:DP	0/1:92,19:0.17:111
chr10	72631626	rs865832	C	T	2905.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:79,129:0.62:208
chr10	72635143	rs3998628	ATT	A	2135.73	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:70,76:0.52:146
chr10	72636450	rs923177	T	G	5099.77	.	AC=1;AF=0.500;AN=2;DB;DP=569;set=Intersection	GT:AD:AF:DP	0/1:317,247:0.44:564
chr10	72643671	rs9712	C	T	3129.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:127,148:0.54:275
chr10	72648083	rs2854614	TC	GT	1699.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.108;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=1.625;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.00;ReadPosRankSum=-0.891;SOR=0.542;set=HC	GT:AD:AF:DP	0/1:55,45:0.45:100
chr10	72648086	rs827239	A	G	3840.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr10	72648134	rs827238	A	G	5582.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr10	73039860	rs4415677	C	T	2704.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr10	73044382	rs10823716	T	A	2237.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr10	73044413	rs10762434	G	C	3469.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr10	73044580	rs12770025	G	A	19044.77	.	AC=2;AF=1.00;AN=2;DB;DP=715;set=Intersection	GT:AD:AF:DP	1/1:0,704:1.00:704
chr10	73044674	rs10999762	G	A	21942.77	.	AC=2;AF=1.00;AN=2;DB;DP=828;set=Intersection	GT:AD:AF:DP	1/1:2,817:1.00:819
chr10	73044924	rs7350453	A	G	4532.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.79;SOR=2.632;set=HC	GT:AD:AF:DP	1/1:0,99:1.00:99
chr10	73044930	rs7350455	C	T	4659.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.55;SOR=2.606;set=HC	GT:AD:AF:DP	1/1:0,107:1.00:107
chr10	73044954	rs6480503	A	G	4708.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr10	73047593	rs7074280	G	A	13004.77	.	AC=2;AF=1.00;AN=2;DB;DP=506;set=Intersection	GT:AD:AF:DP	1/1:0,485:1.00:485
chr10	73050983	rs3740462	C	T	3629.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr10	73056540	.	A	G	794	.	AC=1;AF=0.500;AN=2;BRF=0.36;FR=0.5000;HP=2;HapScore=2;MGOF=10;MMLQ=24;MQ=59.55;NF=6;NR=35;PP=794;QD=20.2139320133;SC=TGCACACCACACTGGCGGAGG;SbPval=0.59;Source=Platypus;TC=79;TCF=12;TCR=67;TR=41;WE=73056548;WS=73056530;set=Platypus	GT:AD:AF:DP	0/1:38,41:0.52:79
chr10	73078862	rs7924115	C	G	543.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.659;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.08;ReadPosRankSum=0.553;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:19,26:0.58:45
chr10	73079004	rs72542481	C	T	483.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:17,23:0.57:40
chr10	73079147	rs17525188	G	A	121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.070;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.61;ReadPosRankSum=-1.228;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:8,8:0.50:16
chr10	73082563	rs2277257	A	G	4664.77	.	AC=1;AF=0.500;AN=2;DB;DP=497;set=Intersection	GT:AD:AF:DP	0/1:256,237:0.48:493
chr10	73103904	rs41281300	C	G	2922.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:111,129:0.54:240
chr10	73104056	rs2243540	A	G	19687.77	.	AC=2;AF=1.00;AN=2;DB;DP=742;set=Intersection	GT:AD:AF:DP	1/1:2,731:1.00:733
chr10	73111258	rs780667	G	T	2146.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:105,98:0.48:203
chr10	73111408	rs780668	C	T	8225.77	.	AC=1;AF=0.500;AN=2;DB;DP=766;set=Intersection	GT:AD:AF:DP	0/1:377,379:0.50:756
chr10	73115941	rs2252997	TG	CA	18135.77	.	AC=2;AF=1.00;AN=2;DB;DP=406;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,405:1.00:405
chr10	73121645	rs2487067	C	A	1104.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:44,46:0.51:90
chr10	73121913	rs2487068	A	G	29621.77	.	AC=2;AF=1.00;AN=2;DB;DP=1144;set=Intersection	GT:AD:AF:DP	1/1:3,1127:1.00:1130
chr10	73121945	rs1084004	T	C	33325.77	.	AC=2;AF=1.00;AN=2;DB;DP=1207;set=Intersection	GT:AD:AF:DP	1/1:2,1194:1.00:1196
chr10	73269714	rs2297953	T	C	1282.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:56,51:0.48:107
chr10	73270906	rs3802720	T	C	5761.77	.	AC=1;AF=0.500;AN=2;DB;DP=569;set=Intersection	GT:AD:AF:DP	0/1:284,281:0.50:565
chr10	73270982	rs3802719	G	A	6759.77	.	AC=1;AF=0.500;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	0/1:182,187:0.51:369
chr10	73270995	rs3802718	A	G	6437.77	.	AC=1;AF=0.500;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	0/1:154,165:0.52:319
chr10	73337850	rs6480531	G	A	3202.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:150,141:0.48:291
chr10	73377314	rs7903772	C	G	1237.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:60,56:0.48:116
chr10	73377330	rs6480536	T	C	1061.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:38,45:0.54:83
chr10	73403490	rs10823810	A	G	3383.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:160,155:0.49:315
chr10	73406636	rs11598249	C	T	532.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:9,23:0.72:32
chr10	73434888	rs1227049	G	C	2638.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:174,135:0.44:309
chr10	73439066	rs3802717	A	T	2154.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.167;ClippingRankSum=0.000;DB;DP=235;ExcessHet=3.0103;FS=26.934;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.37;ReadPosRankSum=1.020;SOR=0.122;set=HC	GT:AD:AF:DP	0/1:113,117:0.51:230
chr10	73439101	rs1227042	T	C	16126.77	.	AC=2;AF=1.00;AN=2;DB;DP=612;set=Intersection	GT:AD:AF:DP	1/1:0,599:1.00:599
chr10	73447281	rs1227087	G	A	3772.77	.	AC=1;AF=0.500;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	0/1:171,168:0.50:339
chr10	73447555	rs1227086	C	T	1842.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:104,84:0.45:188
chr10	73455201	rs3752752	T	C	23550.77	.	AC=2;AF=1.00;AN=2;DB;DP=909;set=Intersection	GT:AD:AF:DP	1/1:2,906:1.00:908
chr10	73455273	rs3752751	T	C	15371.77	.	AC=2;AF=1.00;AN=2;DB;DP=590;set=Intersection	GT:AD:AF:DP	1/1:0,589:1.00:589
chr10	73455308	rs3752750	T	C	9895.77	.	AC=2;AF=1.00;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	1/1:0,370:1.00:370
chr10	73472868	rs2394838	C	G	2573.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:205,129:0.39:334
chr10	73472882	rs2166631	C	T	2663.77	.	AC=1;AF=0.500;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	0/1:227,142:0.38:369
chr10	73483645	rs3802713	C	T	1018.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:59,45:0.43:104
chr10	73492079	rs1227065	A	G	8627.77	.	AC=1;AF=0.500;AN=2;DB;DP=949;set=Intersection	GT:AD:AF:DP	0/1:515,428:0.45:943
chr10	73493813	.	G	A	898.77	.	AC=1;AF=0.500;AN=2;DP=64;set=Intersection	GT:AD:AF:DP	0/1:26,38:0.59:64
chr10	73494159	rs1227062	T	A	1121.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:81,53:0.40:134
chr10	73494229	rs1227061	T	C	1090.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:69,47:0.41:116
chr10	73494288	rs55724553	G	A	2446.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:161,118:0.42:279
chr10	73499561	rs10762474	C	G	1802.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:133,97:0.42:230
chr10	73501374	rs1227052	C	T	3308.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:123,138:0.53:261
chr10	73501556	rs1227051	G	A	8917.77	.	AC=1;AF=0.500;AN=2;DB;DP=850;set=Intersection	GT:AD:AF:DP	0/1:418,424:0.50:842
chr10	73514911	rs9415993	G	C	2133.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:98,86:0.47:184
chr10	73515103	rs3747858	G	T	5233.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:1,199:0.99:200
chr10	73520391	rs10999987	C	T	533.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:37,28:0.43:65
chr10	73520632	rs3747869	A	C	4162.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr10	73521371	rs3747867	C	T	1340.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:56,64:0.53:120
chr10	73533177	rs3747862	A	G	7775.77	.	AC=1;AF=0.500;AN=2;DB;DP=714;set=Intersection	GT:AD:AF:DP	0/1:333,374:0.53:707
chr10	73537388	rs7917781	T	C	2029.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr10	73537614	rs17712523	G	A	5405.77	.	AC=1;AF=0.500;AN=2;DB;DP=506;set=Intersection	GT:AD:AF:DP	0/1:238,257:0.52:495
chr10	73537821	rs10999996	G	T	1652.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:98,73:0.43:171
chr10	73537978	rs10762480	C	T	6330.77	.	AC=1;AF=0.500;AN=2;DB;DP=603;set=Intersection	GT:AD:AF:DP	0/1:288,312:0.52:600
chr10	73538109	rs10740390	C	G	1732.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:103,79:0.43:182
chr10	73538896	rs6480555	T	A	880.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:52,37:0.42:89
chr10	73544086	rs3802711	G	A	4813.77	.	AC=1;AF=0.500;AN=2;DB;DP=483;set=Intersection	GT:AD:AF:DP	0/1:239,232:0.49:471
chr10	73544604	rs7068810	T	C	1859.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:87,81:0.48:168
chr10	73545236	rs3802709	G	T	2026.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:70,82:0.54:152
chr10	73550117	rs11592462	C	G	7880.77	.	AC=1;AF=0.500;AN=2;DB;DP=755;set=Intersection	GT:AD:AF:DP	0/1:373,378:0.50:751
chr10	73550969	rs10466026	G	A	6519.77	.	AC=1;AF=0.500;AN=2;DB;DP=600;set=Intersection	GT:AD:AF:DP	0/1:283,311:0.52:594
chr10	73558030	rs7068357	G	A	2605.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:132,117:0.47:249
chr10	73558852	rs4747193	A	G	2229.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:123,95:0.44:218
chr10	73558886	rs4747194	G	A	3416.77	.	AC=1;AF=0.500;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	0/1:186,159:0.46:345
chr10	73558952	rs4747195	C	T	6922.77	.	AC=1;AF=0.500;AN=2;DB;DP=633;set=Intersection	GT:AD:AF:DP	0/1:310,321:0.51:631
chr10	73562538	rs12773941	C	T	1858.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:72,72:0.50:144
chr10	73562744	rs10823849	G	A	9433.77	.	AC=1;AF=0.500;AN=2;DB;DP=897;set=Intersection	GT:AD:AF:DP	0/1:444,445:0.50:889
chr10	73566203	rs4747197	T	A	2206.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;MQ=60.06;set=Intersection	GT:AD:AF:DP	0/1:66,98:0.60:164
chr10	73570334	rs11818398	G	A	3683.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:184,175:0.49:359
chr10	73571581	rs140848302	C	CCT	5455.73	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr10	73576307	rs7869	C	T	4301.77	.	AC=1;AF=0.500;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	0/1:160,187:0.54:347
chr10	73578503	rs885828	G	A	1977.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.275;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=2.599;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.99;ReadPosRankSum=1.159;SOR=0.514;set=HC	GT:AD:AF:DP	0/1:84,96:0.53:180
chr10	73578672	rs749823	G	A	972.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:29,40:0.58:69
chr10	73578704	rs142614739	AAGTCTC	A	1475.73	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:51,40:0.44:91
chr10	73578882	rs4747203	T	C	5298.77	.	AC=1;AF=0.500;AN=2;DB;DP=529;set=Intersection	GT:AD:AF:DP	0/1:262,265:0.50:527
chr10	73579217	rs11000016	C	T	1805.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:81,79:0.49:160
chr10	73579405	rs3747860	C	T	6654.77	.	AC=1;AF=0.500;AN=2;DB;DP=663;set=Intersection	GT:AD:AF:DP	0/1:337,318:0.49:655
chr10	73579787	rs12769743	A	T	384.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:20,17:0.46:37
chr10	73581560	rs2070968	A	T	2842.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:179,135:0.43:314
chr10	73583520	rs2249814	G	C	5269.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr10	73583573	rs56911723	C	CA	2246.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;ClippingRankSum=0.000;DB;DP=455;ExcessHet=3.0103;FS=2.462;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=2.606;QD=5.30;ReadPosRankSum=-0.437;SOR=0.844;set=HC	GT:AD:AF:DP	0/1:239,185:0.44:424
chr10	73591829	rs41306532	G	A	1853.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:75,84:0.53:159
chr10	73594358	rs3878001	C	T	792.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:36,35:0.49:71
chr10	73610982	rs2070188	G	A	5257.77	.	AC=1;AF=0.500;AN=2;DB;DP=514;set=Intersection	GT:AD:AF:DP	0/1:248,256:0.51:504
chr10	73963044	.	C	CA	293.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.552;ClippingRankSum=0.000;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=2.197;QD=2.51;ReadPosRankSum=0.237;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:80,37:0.32:117
chr10	73964004	rs4237336	C	T	1935.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr10	74035041	rs1053639	T	A	927.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:39,41:0.51:80
chr10	74100642	rs9416018	G	A	1324.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:86,68:0.44:154
chr10	74139200	rs11000276	T	G	2652.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:132,132:0.50:264
chr10	74182917	rs10823922	T	C	6092.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr10	74183251	rs7069357	G	A	1070.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr10	74234817	rs915432	T	C	4586.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:3,165:0.98:168
chr10	74235192	rs5786077	A	AT	242.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.940;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.49;ReadPosRankSum=1.841;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:3,15:0.83:18
chr10	74235771	rs11000322	G	A	3183.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr10	74268031	rs3793927	T	C	2434.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr10	74293584	rs10509343	A	T	4697.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr10	74293601	rs11818304	T	A	4679.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr10	74660059	rs145062197	G	A	1974.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.617;ClippingRankSum=0.000;DB;DP=203;ExcessHet=3.0103;FS=9.592;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.02;ReadPosRankSum=-0.040;SOR=0.297;set=HC	GT:AD:AF:DP	0/1:73,124:0.63:197
chr10	74671352	rs148311247	A	C	520.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:28,24:0.46:52
chr10	74690437	.	CTT	C	775.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.605;ClippingRankSum=0.000;DP=240;ExcessHet=3.0103;FS=11.196;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=-0.578;QD=5.14;ReadPosRankSum=1.143;SOR=0.978;set=HC	GT:AD:AF:DP	0/1:99,52:0.34:151
chr10	74695287	rs2461917	T	C	1243.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr10	74804988	.	G	GT	89.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.146;ClippingRankSum=0.000;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=1.733;QD=1.95;ReadPosRankSum=2.991;SOR=0.129;set=HC	GT:AD:AF:DP	0/1:34,12:0.26:46
chr10	74874097	.	C	CT	105.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.597;ClippingRankSum=0.000;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=1.898;QD=1.23;ReadPosRankSum=1.393;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:66,20:0.23:86
chr10	74885409	rs147542387	T	TTA	49.25	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=16.42;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr10	74906122	.	TA	T	449.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.914;ClippingRankSum=0.000;DP=365;ExcessHet=3.0103;FS=3.932;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.660;QD=1.32;ReadPosRankSum=1.192;SOR=0.816;set=HC	GT:AD:AF:DP	0/1:261,80:0.23:341
chr10	74928066	.	TGAG	T	73.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.348;ClippingRankSum=0.000;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.10;ReadPosRankSum=-0.669;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:60,7:0.10:67
chr10	75135833	.	TA	T	262.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.329;ClippingRankSum=0.000;DP=271;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=3.310;QD=1.00;ReadPosRankSum=-1.157;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:201,63:0.24:264
chr10	75185433	.	G	GA	50.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.279;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.23;MQRankSum=-2.907;QD=1.10;ReadPosRankSum=1.684;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:34,12:0.26:46
chr10	75283637	rs377326169	AT	A	279.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.254;ClippingRankSum=-0.000;DB;DP=29;ExcessHet=3.0103;FS=2.077;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=16.45;ReadPosRankSum=-0.869;SOR=1.426;set=HC	GT:AD:AF:DP	0/1:8,9:0.53:17
chr10	75283640	rs9703377	T	A	243.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.130;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.54;ReadPosRankSum=1.230;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:10,8:0.44:18
chr10	75283641	rs9703929	A	T	243.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.614;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.54;ReadPosRankSum=1.230;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:10,8:0.44:18
chr10	75283642	rs371483348	TTA	T	279.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.132;ClippingRankSum=-0.000;DB;DP=28;ExcessHet=3.0103;FS=2.077;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=16.45;ReadPosRankSum=-0.869;SOR=1.426;set=HC	GT:AD:AF:DP	0/1:8,9:0.53:17
chr10	75286616	.	C	CA	163.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.094;ClippingRankSum=0.000;DP=233;ExcessHet=3.0103;FS=4.847;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.83;ReadPosRankSum=0.352;SOR=0.358;set=HC	GT:AD:AF:DP	0/1:162,35:0.18:197
chr10	75301217	rs200976167	C	T	3830.77	.	AC=1;AF=0.500;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	0/1:216,181:0.46:397
chr10	75302488	.	C	CA	107.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.854;ClippingRankSum=0.000;DP=68;ExcessHet=3.0103;FS=6.126;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.68;ReadPosRankSum=0.367;SOR=2.175;set=HC	GT:AD:AF:DP	0/1:46,18:0.28:64
chr10	75490217	rs11814282	T	C	1044.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr10	75519322	rs10740418	T	C	9615.77	.	AC=2;AF=1.00;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	1/1:0,358:1.00:358
chr10	75523634	rs35528438	A	G	2272.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:150,123:0.45:273
chr10	75523674	rs151207669	T	C	3169.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:140,156:0.53:296
chr10	75525999	rs3849969	A	G	6530.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr10	75529977	.	G	A	1347.77	.	AC=1;AF=0.500;AN=2;DP=128;set=Intersection	GT:AD:AF:DP	0/1:65,60:0.48:125
chr10	75532114	rs137937533	T	C	901.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:50,43:0.46:93
chr10	75532848	rs145929404	GCCAGGACTCCAGGTGTCCAGGACTCCAGGTGT	G	4536.73	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr10	75545251	rs12256103	A	G	3760.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr10	75558867	rs2271271	G	A	9766.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:0,363:1.00:363
chr10	75559662	rs141230821	C	CTCTA	4763.73	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:4,203:0.98:207
chr10	75562161	rs13013	C	A	497.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr10	75607696	rs67135801	CA	C	5139.73	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr10	75612881	rs2250140	T	C	6130.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr10	75620757	rs2664282	T	C	4666.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr10	75632760	rs2675671	C	T	8543.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	1/1:0,330:1.00:330
chr10	75671294	rs201591610	A	G	3034.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:89,126:0.59:215
chr10	75671875	rs2227581	G	A	6785.77	.	AC=1;AF=0.500;AN=2;DB;DP=615;set=Intersection	GT:AD:AF:DP	0/1:292,318:0.52:610
chr10	75672607	rs61567551	C	CA,CAA	1557.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.131;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.09;MQRankSum=0.000;QD=15.73;ReadPosRankSum=-1.243;SOR=0.633;set=HC	GT:AD:AF:DP	1/2:13,64,22:0.65,0.22:99
chr10	75673101	rs2227564	T	C	11343.77	.	AC=2;AF=1.00;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	1/1:0,431:1.00:431
chr10	75673731	rs2227566	C	T	5291.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr10	75674740	rs2227571	C	T	10563.77	.	AC=2;AF=1.00;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	1/1:0,388:1.00:388
chr10	75842152	rs2270548	G	A	4363.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr10	75843100	rs1908339	T	A	4396.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr10	75863580	rs140766884	G	A	3893.77	.	AC=1;AF=0.500;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	0/1:189,192:0.50:381
chr10	75863750	rs2270552	C	T	1106.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:47,46:0.49:93
chr10	75867193	rs2279648	G	T	1441.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:47,59:0.56:106
chr10	75871735	rs2131956	C	G	4558.77	.	AC=1;AF=0.500;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	0/1:194,215:0.53:409
chr10	75874166	rs142879319	CGTGTGTGT	C	1332.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.090;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=4.076;MLEAC=1;MLEAF=0.500;MQ=61.85;MQRankSum=3.191;QD=19.60;ReadPosRankSum=-0.044;SOR=0.321;set=HC	GT:AD:AF:DP	0/1:28,40:0.59:68
chr10	75885817	rs1908331	G	A	2559.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:115,111:0.49:226
chr10	75889760	rs35456205	GA	G	1619.73	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:135,114:0.46:249
chr10	75896601	rs10762576	A	C	1372.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:72,69:0.49:141
chr10	75936611	rs10824095	C	T	3201.77	.	AC=1;AF=0.500;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	0/1:182,157:0.46:339
chr10	76158177	rs2126763	C	T	406.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:16,20:0.56:36
chr10	76349020	rs112610475	CT	C	46.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.562;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=6.693;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.33;ReadPosRankSum=1.333;SOR=0.248;set=HC	GT:AD:AF:DP	0/1:115,28:0.20:143
chr10	76360304	rs200627441	C	CA	793.73	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:59,54:0.48:113
chr10	76429870	rs10740443	T	C	3293.77	.	AC=1;AF=0.500;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	0/1:189,162:0.46:351
chr10	76854564	rs3088142	C	T	5283.77	.	AC=1;AF=0.500;AN=2;DB;DP=598;set=Intersection	GT:AD:AF:DP	0/1:323,274:0.46:597
chr10	76855326	rs3740318	A	G	2000.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:56,81:0.59:137
chr10	76855412	rs3740317	G	A	3570.77	.	AC=1;AF=0.500;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	0/1:181,173:0.49:354
chr10	76861680	rs6480771	T	C	807.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:49,37:0.43:86
chr10	76867899	rs7912300	T	C	1372.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:58,62:0.52:120
chr10	76928186	rs57250768	A	T	1437.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:62,56:0.47:118
chr10	77159842	.	G	C	732.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.623;ClippingRankSum=0.000;DP=432;ExcessHet=3.0103;FS=364.644;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.96;ReadPosRankSum=-5.460;SOR=8.051;set=HC	GT:AD:AF:DP	0/1:319,55:0.15:374
chr10	77159845	.	G	C	692.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.765;ClippingRankSum=0.000;DP=424;ExcessHet=3.0103;FS=308.452;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.89;ReadPosRankSum=-4.743;SOR=7.700;set=HC	GT:AD:AF:DP	0/1:320,46:0.13:366
chr10	77159848	.	G	C	648.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.582;ClippingRankSum=0.000;DP=423;ExcessHet=3.0103;FS=274.023;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.78;ReadPosRankSum=-4.935;SOR=7.568;set=HC	GT:AD:AF:DP	0/1:321,43:0.12:364
chr10	77159854	.	G	C	471.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.615;ClippingRankSum=0.000;DP=428;ExcessHet=3.0103;FS=227.402;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.29;ReadPosRankSum=-5.518;SOR=7.327;set=HC	GT:AD:AF:DP	0/1:329,38:0.10:367
chr10	77159857	.	A	C	417.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.063;ClippingRankSum=0.000;DP=436;ExcessHet=3.0103;FS=203.238;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.12;ReadPosRankSum=-5.868;SOR=7.167;set=HC	GT:AD:AF:DP	0/1:338,35:0.09:373
chr10	77159860	.	G	C	231.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.444;ClippingRankSum=0.000;DP=431;ExcessHet=3.0103;FS=169.130;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.63;ReadPosRankSum=-6.301;SOR=6.802;set=HC	GT:AD:AF:DP	0/1:336,29:0.08:365
chr10	77159863	.	A	C	112.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.835;ClippingRankSum=0.000;DP=440;ExcessHet=3.0103;FS=138.944;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.31;ReadPosRankSum=-6.324;SOR=6.438;set=HC	GT:AD:AF:DP	0/1:345,24:0.07:369
chr10	77160682	rs10824306	C	T	4338.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:1,153:0.99:154
chr10	77191441	rs55922628	C	A	1198.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr10	77312184	rs1367290	C	T	9684.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.524;ClippingRankSum=0.000;DB;DP=658;ExcessHet=3.0103;FS=0.684;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.000;QD=16.30;ReadPosRankSum=0.406;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:105,489:0.82:594
chr10	77542558	rs2133705	C	T	645.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:20,25:0.56:45
chr10	77795995	rs4745806	C	T	726.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr10	77807027	rs1898071	T	C	3088.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr10	77807092	rs1898070	A	C	1658.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr10	77818594	rs7924288	C	T	1823.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr10	78649399	rs2288840	C	T	12159.77	.	AC=2;AF=1.00;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	1/1:0,456:1.00:456
chr10	78704773	rs149631521	CAG	C	73.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.708;ClippingRankSum=0.000;DB;DP=260;ExcessHet=3.0103;FS=3.447;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=-0.310;QD=0.36;ReadPosRankSum=-1.920;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:185,19:0.09:204
chr10	78729669	rs2288837	A	G	1234.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr10	78734056	rs41274570	G	A	118.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:8,6:0.43:14
chr10	78767769	rs72390326	CTGTAGACTGCAT	C	598.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:12,16:0.57:28
chr10	78778734	rs16934182	G	A	2516.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:106,120:0.53:226
chr10	78782876	rs7078109	T	C	1382.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:43,59:0.58:102
chr10	78839127	rs10638309	A	AGTGT,AGTGTGTGTGT	573.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=19;set=Intersection	GT:AF:DP	1/2:0.69,0.25:16
chr10	78844579	rs34592624	G	GA	1271.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.159;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=2.515;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.59;ReadPosRankSum=0.412;SOR=0.968;set=HC	GT:AD:AF:DP	0/1:60,88:0.59:148
chr10	78868165	rs375194108	CAAAA	C,CA	9386.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=314;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.10;QD=31.39;SOR=0.830;set=HC	GT:AD:AF:DP	1/2:8,56,235:0.19,0.79:299
chr10	78944590	rs1131824	G	A	8698.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr10	78944796	rs150813973	AC	A	1318.73	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:41,44:0.52:85
chr10	78977052	.	C	CA	704.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.654;ClippingRankSum=0.000;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.53;ReadPosRankSum=0.814;SOR=0.577;set=HC	GT:AD:AF:DP	0/1:54,54:0.50:108
chr10	78977190	rs16934368	A	C	15561.77	.	AC=2;AF=1.00;AN=2;DB;DP=602;set=Intersection	GT:AD:AF:DP	1/1:5,586:0.99:591
chr10	79552092	rs2165046	C	T	798.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:34,32:0.48:66
chr10	79552151	rs1058202	T	C	1853.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:91,86:0.49:177
chr10	79553673	rs2812425	T	C	2887.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:171,138:0.45:309
chr10	79565655	rs2289311	G	A	1186.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:47,52:0.53:99
chr10	79566480	rs58116353	CT	C	436.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.952;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=3.696;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.06;ReadPosRankSum=-0.046;SOR=1.569;set=HC	GT:AD:AF:DP	0/1:14,15:0.52:29
chr10	79566632	rs1058198	G	A	6481.77	.	AC=1;AF=0.500;AN=2;DB;DP=662;set=Intersection	GT:AD:AF:DP	0/1:332,320:0.49:652
chr10	79571108	rs2289309	C	T	809.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:46,40:0.47:86
chr10	79575879	rs1248638	A	G	2250.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:139,111:0.44:250
chr10	79577408	rs10824577	G	C	387.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:15,17:0.53:32
chr10	79579047	rs1248635	A	G	5594.77	.	AC=1;AF=0.500;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	0/1:197,258:0.57:455
chr10	79579251	rs2289308	G	A	786.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:37,37:0.50:74
chr10	79584178	rs1248629	G	C	2150.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:109,101:0.48:210
chr10	79589904	rs55854323	C	T	918.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:33,37:0.53:70
chr10	79590685	rs10824579	C	T	681.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:46,32:0.41:78
chr10	79590726	rs1248663	C	G	398.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:17,15:0.47:32
chr10	79595417	rs1248661	C	T	546.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:16,21:0.57:37
chr10	79614189	rs1248692	A	G	3180.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:146,138:0.49:284
chr10	79616605	rs1248696	T	C	1593.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:52,79:0.60:131
chr10	79628875	rs1248655	A	G	1201.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:43,60:0.58:103
chr10	79741876	rs145084873	C	G	1376.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:75,61:0.45:136
chr10	79745881	rs146253630	T	C	3655.77	.	AC=1;AF=0.500;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	0/1:192,171:0.47:363
chr10	79764447	rs143228905	G	A	630.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:32,28:0.47:60
chr10	79769867	rs12767179	G	A	1027.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:44,45:0.51:89
chr10	79777204	.	C	CA	64.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.895;ClippingRankSum=0.000;DP=78;ExcessHet=3.0103;FS=6.801;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.01;ReadPosRankSum=-0.102;SOR=0.186;set=HC	GT:AD:AF:DP	0/1:50,14:0.22:64
chr10	79779150	rs1863898	G	A	651.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:29,29:0.50:58
chr10	79793688	rs3740253	C	T	8410.77	.	AC=1;AF=0.500;AN=2;DB;DP=925;set=Intersection	GT:AD:AF:DP	0/1:506,414:0.45:920
chr10	79797660	.	CTTT	C	112.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.490;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=13.532;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.89;ReadPosRankSum=1.403;SOR=2.809;set=HC	GT:AD:AF:DP	0/1:21,8:0.28:29
chr10	80288406	rs1865706	T	G	5841.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:1,212:1.00:213
chr10	80310465	rs2670191	T	C	8229.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr10	80310636	rs7090749	G	A	8897.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,327:1.00:327
chr10	80762010	rs368529863	G	GA	67.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.323;ClippingRankSum=-0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.84;ReadPosRankSum=3.130;SOR=0.790;set=HC	GT:AD:AF:DP	0/1:7,7:0.50:14
chr10	80763382	rs10762828	C	T	2809.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:158,143:0.48:301
chr10	80763534	rs10762829	A	G	949.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:44,44:0.50:88
chr10	80961519	rs2802371	T	C	1794.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:73,86:0.54:159
chr10	81037229	rs1250539	G	A	3001.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr10	81045207	rs1250569	T	C	3584.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr10	81045280	rs1250568	T	C	8892.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr10	81053475	rs1250560	G	A	7024.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr10	81053560	rs1250559	G	A	1694.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr10	81058027	rs1250552	A	G	6495.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr10	81060474	rs1250549	T	C	5449.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr10	81060829	rs1782648	G	A	1743.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr10	81065201	rs1250558	G	A	6605.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr10	81065774	rs1250557	G	T	2724.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:1,87:0.99:88
chr10	81067050	.	C	A	1080.77	.	AC=1;AF=0.500;AN=2;DP=84;set=Intersection	GT:AD:AF:DP	0/1:40,44:0.52:84
chr10	81067480	rs1972346	C	G	2034.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr10	81270173	.	A	G	142.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.145;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.16;MQRankSum=-1.467;QD=3.24;ReadPosRankSum=-1.141;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:33,11:0.25:44
chr10	81270319	rs369628215	T	A	1511.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.053;ClippingRankSum=0.000;DB;DP=352;ExcessHet=3.0103;FS=1.947;MLEAC=1;MLEAF=0.500;MQ=47.85;MQRankSum=-7.647;QD=4.29;ReadPosRankSum=0.577;SOR=0.580;set=HC	GT:AD:AF:DP	0/1:250,102:0.29:352
chr10	81272720	rs200745296	C	T	429.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.176;ClippingRankSum=0.000;DB;DP=242;ExcessHet=3.0103;FS=5.066;MLEAC=1;MLEAF=0.500;MQ=49.85;MQRankSum=-7.776;QD=1.81;ReadPosRankSum=-2.345;SOR=1.111;set=HC	GT:AD:AF:DP	0/1:194,43:0.18:237
chr10	81272881	rs199829110	A	G	257.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.605;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.46;MQRankSum=-4.437;QD=2.93;ReadPosRankSum=1.392;SOR=0.780;set=HC	GT:AD:AF:DP	0/1:69,19:0.22:88
chr10	81318545	rs2217231	A	T	1406.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:57,61:0.52:118
chr10	81318820	rs17880349	G	A	3794.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr10	81318930	rs1250943	C	G	558.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr10	81319214	rs1059046	G	T	2685.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.57;QD=30.18;SOR=1.636;set=HC	GT:AD:AF:DP	1/1:0,89:1.00:89
chr10	81319267	rs1650232	C	T	1693.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.35;QD=31.96;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr10	81319423	rs1975008	C	T	5248.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr10	81319483	rs1975007	A	G	4064.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr10	81342369	rs34032311	G	T	6265.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr10	81342469	rs2678654	A	G	1153.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.71;QD=32.05;SOR=4.921;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr10	81343036	rs3855862	G	A	546.94	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=4.530;MLEAC=2;MLEAF=1.000;MQ=41.55;MQRankSum=-2.357;QD=26.04;ReadPosRankSum=-0.061;SOR=2.948;set=HC	GT:AD:AF:DP	1/1:2,19:0.90:21
chr10	81343060	.	G	GCCAAGAACACATTATGGGCAGAGAGAAAGCTCACACTT	1049.73	.	AC=2;AF=1.00;AN=2;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.52;QD=69.98;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr10	81371729	rs1136450	C	G	3515.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.719;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=6.917;MLEAC=2;MLEAF=1.000;MQ=44.71;MQRankSum=0.015;QD=29.79;ReadPosRankSum=-0.898;SOR=2.767;set=HC	GT:AD:AF:DP	1/1:1,117:0.99:118
chr10	81373182	rs4253524	G	C	906.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr10	81374592	rs4253603	G	A	1150.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:53,47:0.47:100
chr10	81838656	rs3824727	A	C	3362.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:141,135:0.49:276
chr10	81841692	rs1932574	G	T	1537.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:76,73:0.49:149
chr10	81901722	rs745182	C	T	578.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:23,22:0.49:45
chr10	81904638	rs2819874	G	A	2303.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.152;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=0.683;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.06;ReadPosRankSum=0.821;SOR=0.827;set=HC	GT:AD:AF:DP	0/1:75,60:0.44:135
chr10	81904645	rs41291392	C	T	2470.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.838;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=0.631;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.84;ReadPosRankSum=0.233;SOR=0.809;set=HC	GT:AD:AF:DP	0/1:84,72:0.46:156
chr10	81915790	rs2789687	T	C	3865.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr10	81921810	rs2304410	T	C	3825.77	.	AC=1;AF=0.500;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	0/1:163,189:0.54:352
chr10	81923205	rs2236558	T	G	2505.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:147,120:0.45:267
chr10	81923456	rs34148644	G	C	105.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:10,7:0.41:17
chr10	81923959	rs12762098	G	C	1249.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:58,65:0.53:123
chr10	81925792	.	ACG	A	1085.73	.	AC=1;AF=0.500;ALERT;AN=2;DP=182;set=Intersection	GT:AD:AF:DP	0/1:105,59:0.36:164
chr10	81925793	rs75344562	C	T	898.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-3.687;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=6.215;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.69;ReadPosRankSum=1.457;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:97,61:0.39:158
chr10	81925866	rs72807973	T	C	4538.77	.	AC=1;AF=0.500;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	0/1:188,228:0.55:416
chr10	81925982	rs61537094	CA	C	504.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.235;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=3.182;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.07;ReadPosRankSum=-0.075;SOR=0.374;set=HC	GT:AD:AF:DP	0/1:78,46:0.37:124
chr10	81926718	rs2228427	A	G	1667.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.506;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=2.526;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.30;ReadPosRankSum=0.603;SOR=0.888;set=HC	GT:AD:AF:DP	0/1:111,90:0.45:201
chr10	81926750	rs34332933	G	C	1770.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.069;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=0.583;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.68;ReadPosRankSum=1.481;SOR=0.603;set=HC	GT:AD:AF:DP	0/1:96,87:0.48:183
chr10	81927059	rs2229554	C	T	4046.77	.	AC=1;AF=0.500;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	0/1:236,202:0.46:438
chr10	81932453	rs61860035	C	G	379.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:19,18:0.49:37
chr10	81932509	rs75804987	C	T	1057.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:44,43:0.49:87
chr10	81932680	rs11201972	C	T	3618.77	.	AC=1;AF=0.500;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	0/1:187,181:0.49:368
chr10	81932790	rs2236556	T	C	2125.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr10	81995058	rs2678622	G	A	4120.77	.	AC=1;AF=0.500;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	0/1:212,199:0.48:411
chr10	82007218	rs185034903	C	T	264.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.441;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=9.715;MLEAC=1;MLEAF=0.500;MQ=45.68;MQRankSum=-3.813;QD=5.88;ReadPosRankSum=0.667;SOR=0.312;set=HC	GT:AD:AF:DP	0/1:28,17:0.38:45
chr10	82012599	rs12219032	T	C	10676.77	.	AC=1;AF=0.500;AN=2;DB;DP=947;set=Intersection	GT:AD:AF:DP	0/1:441,478:0.52:919
chr10	82012748	rs12217395	G	A	12304.77	.	AC=1;AF=0.500;AN=2;DB;DP=1108;set=Intersection	GT:AD:AF:DP	0/1:516,574:0.53:1090
chr10	82012791	rs71481580	G	T	12884.77	.	AC=1;AF=0.500;AN=2;DB;DP=1262;set=Intersection	GT:AD:AF:DP	0/1:571,674:0.54:1245
chr10	82012954	rs12773664	A	G	16450.77	.	AC=1;AF=0.500;AN=2;DB;DP=1021;set=Intersection	GT:AD:AF:DP	0/1:537,467:0.47:1004
chr10	82012967	rs12411782	G	T	15260.77	.	AC=1;AF=0.500;AN=2;DB;DP=909;set=Intersection	GT:AD:AF:DP	0/1:483,408:0.46:891
chr10	82013022	rs35266651	G	A	6831.77	.	AC=1;AF=0.500;AN=2;DB;DP=647;set=Intersection	GT:AD:AF:DP	0/1:335,303:0.47:638
chr10	82013119	rs12411806	G	A	6590.77	.	AC=1;AF=0.500;AN=2;DB;DP=650;set=Intersection	GT:AD:AF:DP	0/1:351,292:0.45:643
chr10	82033594	rs2993763	G	A	1462.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.365;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=0.552;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.22;ReadPosRankSum=0.566;SOR=0.640;set=HC	GT:AD:AF:DP	0/1:99,79:0.44:178
chr10	82033683	rs4933327	G	A	1111.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:72,52:0.42:124
chr10	82034262	rs2994388	G	A	7584.77	.	AC=1;AF=0.500;AN=2;DB;DP=812;set=Intersection	GT:AD:AF:DP	0/1:432,374:0.46:806
chr10	82034842	rs10887711	A	G	1039.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:85,55:0.39:140
chr10	82034854	rs10788546	T	C	1567.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:103,76:0.42:179
chr10	82040052	rs1143694	A	G	2970.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:137,140:0.51:277
chr10	82040162	rs71481596	C	T	1043.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:55,44:0.44:99
chr10	82040346	rs2282367	A	G	6802.77	.	AC=1;AF=0.500;AN=2;DB;DP=672;set=Intersection	GT:AD:AF:DP	0/1:326,337:0.51:663
chr10	82040602	rs71481597	A	G	3133.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:130,135:0.51:265
chr10	82045354	rs10887721	G	C	3997.77	.	AC=1;AF=0.500;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	0/1:160,184:0.53:344
chr10	82049251	.	T	TTTTTTC	1279.73	.	AC=1;AF=0.500;AN=2;DP=180;MQ=61.54;set=Intersection	GT:AD:AF:DP	0/1:88,49:0.36:137
chr10	82095968	rs1340383	T	G	754.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.268;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.78;ReadPosRankSum=1.270;SOR=0.783;set=HC	GT:AD:AF:DP	0/1:31,39:0.56:70
chr10	82111460	rs11202652	T	A	143.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:14,7:0.33:21
chr10	82112488	rs1572819	A	G	458.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:26,19:0.42:45
chr10	82126808	rs1047952	C	G	336.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:20,14:0.41:34
chr10	82182296	rs1870142	G	A	1917.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:136,98:0.42:234
chr10	82182328	rs1870143	G	A	1487.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:99,73:0.42:172
chr10	82182405	rs5786455	C	CT	439.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.352;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.16;ReadPosRankSum=0.572;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:27,21:0.44:48
chr10	82191643	rs6585994	A	G	3359.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:139,156:0.53:295
chr10	82269238	rs10785897	C	T	769.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:43,39:0.48:82
chr10	82331347	rs59617064	A	G	2874.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr10	82363340	rs7069048	C	A	3629.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr10	82363404	rs7075840	A	G	4413.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:2,170:0.99:172
chr10	82394019	rs71310969	G	GT	1451.73	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:57,76:0.57:133
chr10	84586960	.	TAA	T	147.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.264;ClippingRankSum=0.000;DP=23;ExcessHet=3.0103;FS=2.158;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.23;ReadPosRankSum=0.184;SOR=0.842;set=HC	GT:AD:AF:DP	0/1:6,10:0.62:16
chr10	84625107	rs478010	C	T	15561.77	.	AC=2;AF=1.00;AN=2;DB;DP=590;set=Intersection	GT:AD:AF:DP	1/1:0,583:1.00:583
chr10	85902394	rs3816716	G	C	7990.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr10	85908688	rs7069909	G	A	3502.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr10	85936160	rs4348833	T	C	2813.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:134,134:0.50:268
chr10	85944313	rs12250279	A	T	1993.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.723;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=1.861;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.59;ReadPosRankSum=0.329;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:116,92:0.44:208
chr10	85944322	rs35568118	T	A	1923.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.057;ClippingRankSum=0.000;DB;DP=237;ExcessHet=3.0103;FS=1.145;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.22;ReadPosRankSum=1.458;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:128,106:0.45:234
chr10	85955440	rs11592361	C	T	3271.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:122,140:0.53:262
chr10	85957681	rs11200915	A	C	612.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:13,25:0.66:38
chr10	85958658	rs59594596	A	AAG	557.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.091;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=2.114;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.475;QD=6.64;ReadPosRankSum=0.401;SOR=0.977;set=HC	GT:AD:AF:DP	0/1:55,29:0.35:84
chr10	85958739	rs11200917	T	C	1603.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;MQ=60.05;set=Intersection	GT:AD:AF:DP	0/1:117,79:0.40:196
chr10	85960274	rs11200920	A	C	1545.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:149,84:0.36:233
chr10	85960296	rs10788334	C	T	2303.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:195,130:0.40:325
chr10	85960395	rs4933975	A	G	2919.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:180,152:0.46:332
chr10	85961758	rs11200922	A	G	2486.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:140,113:0.45:253
chr10	85962650	rs7073076	T	G	2663.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:88,111:0.56:199
chr10	85965819	rs10788335	A	G	530.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:23,23:0.50:46
chr10	85974236	rs3814213	T	C	9670.77	.	AC=1;AF=0.500;AN=2;DB;DP=945;set=Intersection	GT:AD:AF:DP	0/1:455,475:0.51:930
chr10	85974381	rs3814212	A	G	3850.77	.	AC=1;AF=0.500;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	0/1:186,179:0.49:365
chr10	85978809	rs4562752	T	G	1389.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:46,57:0.55:103
chr10	85978939	rs4244947	G	A	6142.77	.	AC=1;AF=0.500;AN=2;DB;DP=655;set=Intersection	GT:AD:AF:DP	0/1:346,302:0.47:648
chr10	85981801	rs6585847	T	G	5237.77	.	AC=1;AF=0.500;AN=2;DB;DP=523;set=Intersection	GT:AD:AF:DP	0/1:265,246:0.48:511
chr10	85981842	rs12217769	A	G	3328.77	.	AC=1;AF=0.500;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	0/1:212,146:0.41:358
chr10	85981889	rs12218853	G	A	3001.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:180,142:0.44:322
chr10	85984323	rs11200925	G	A	4385.77	.	AC=1;AF=0.500;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	0/1:220,205:0.48:425
chr10	85984423	rs11200926	C	T	4917.77	.	AC=1;AF=0.500;AN=2;DB;DP=483;set=Intersection	GT:AD:AF:DP	0/1:255,226:0.47:481
chr10	85984723	rs11200928	G	A	3796.77	.	AC=1;AF=0.500;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	0/1:170,176:0.51:346
chr10	85991784	rs3814211	T	C	8483.77	.	AC=1;AF=0.500;AN=2;DB;DP=807;set=Intersection	GT:AD:AF:DP	0/1:384,415:0.52:799
chr10	85993836	rs4933986	A	G	1968.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr10	86004736	rs2279228	A	G	709.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:25,31:0.55:56
chr10	86004873	rs2279227	T	C	994.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:56,51:0.48:107
chr10	86012713	rs1042454	C	T	2823.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:118,132:0.53:250
chr10	86018460	rs3526	A	G	1057.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:42,47:0.53:89
chr10	86131059	rs3814205	A	G	5258.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:1,188:0.99:189
chr10	86185654	rs1336202	T	G	5742.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr10	86198220	rs147451516	AATTGT	A	1714.73	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:60,46:0.43:106
chr10	86198533	rs34484957	T	A	1099.73	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:58,61:0.51:119
chr10	86223795	rs11598369	G	A	3591.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr10	86237505	rs11594873	G	A	6787.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr10	86259580	rs11201071	T	G	2277.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:79,95:0.55:174
chr10	86259872	rs56347056	C	A	1537.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:67,69:0.51:136
chr10	86273249	rs11557865	T	C	12479.77	.	AC=2;AF=1.00;AN=2;DB;DP=473;set=Intersection	GT:AD:AF:DP	1/1:3,468:0.99:471
chr10	86273998	.	G	A	3675.77	.	AC=1;AF=0.500;AN=2;DP=330;set=Intersection	GT:AD:AF:DP	0/1:163,166:0.50:329
chr10	87616034	rs117811337	G	A	1699.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:84,77:0.48:161
chr10	87966028	rs56757884	T	C	1097.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:36,42:0.54:78
chr10	88024443	rs2607863	T	C	5633.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:2,202:0.99:204
chr10	88024553	rs10887569	C	T	7768.77	.	AC=1;AF=0.500;AN=2;DB;DP=730;set=Intersection	GT:AD:AF:DP	0/1:343,383:0.53:726
chr10	88125921	rs10887587	C	T	438.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:29,22:0.43:51
chr10	88126056	rs11202000	T	G	10723.77	.	AC=2;AF=1.00;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	1/1:0,409:1.00:409
chr10	88203068	rs7094132	T	C	12245.77	.	AC=2;AF=1.00;AN=2;DB;DP=482;set=Intersection	GT:AD:AF:DP	1/1:0,477:1.00:477
chr10	88203208	rs7094269	T	C	2554.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr10	88213604	rs6586011	A	G	5441.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr10	88220097	rs147571778	TACAC	T	3711.73	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:110,98:0.47:208
chr10	88220866	rs7922658	C	T	3249.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr10	88230874	rs2288362	G	A	7975.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr10	88256943	rs4934215	C	T	5545.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr10	88277457	rs10887621	C	T	6619.77	.	AC=1;AF=0.500;AN=2;DB;DP=646;set=Intersection	GT:AD:AF:DP	0/1:326,313:0.49:639
chr10	88281344	rs2289738	C	G	2180.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.011;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=1.062;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.38;ReadPosRankSum=1.159;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:109,101:0.48:210
chr10	88281344	.	CCA	GCG	1163	.	AC=1;AF=0.500;AN=2;BRF=0.48;FR=0.5000;HP=2;HapScore=2;MGOF=2;MMLQ=24;MQ=60.0;NF=42;NR=30;PP=1163;QD=16.8953871509;SC=CCGGCCGGGCCCAGGCCTAGC;SbPval=0.68;Source=Platypus;TC=155;TCF=85;TCR=70;TR=72;WE=88281354;WS=88281334;set=Platypus	GT:AD:AF:DP	0/1:83,72:0.46:155
chr10	88281346	rs4934218	A	G	7332.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.60;SOR=0.794;set=HC	GT:AD:AF:DP	1/1:0,206:1.00:206
chr10	88414570	rs11202106	G	A	1460.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:84,95:0.53:179
chr10	88417724	rs10788521	C	T	152.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.778;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.27;ReadPosRankSum=-0.806;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:13,8:0.38:21
chr10	88419012	rs3740334	T	C	2878.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:89,113:0.56:202
chr10	88419641	rs3740335	G	A	1588.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:59,75:0.56:134
chr10	88420871	rs61612272	C	CA	289.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.028;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.91;ReadPosRankSum=0.571;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:25,24:0.49:49
chr10	88422116	rs1079610	C	T	10208.77	.	AC=2;AF=1.00;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	1/1:0,391:1.00:391
chr10	88422151	rs3740337	C	A	3583.77	.	AC=1;AF=0.500;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	0/1:197,183:0.48:380
chr10	88426350	rs17425484	C	T	1212.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:71,59:0.45:130
chr10	88426614	rs34106786	TC	T	3753.73	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:145,145:0.50:290
chr10	88428335	rs2803558	T	C	9774.77	.	AC=2;AF=1.00;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	1/1:0,359:1.00:359
chr10	88439005	rs4468255	G	A	2372.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:89,106:0.54:195
chr10	88445385	rs3740345	G	C	10793.77	.	AC=2;AF=1.00;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	1/1:0,390:1.00:390
chr10	88458996	rs201580455	TTC	T	1883.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.464;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=2.316;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.976;QD=11.77;ReadPosRankSum=-1.386;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:64,96:0.60:160
chr10	88676749	rs112738256	C	CA	261.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.460;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=2.159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.49;ReadPosRankSum=-1.000;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:75,30:0.29:105
chr10	88702350	rs4934281	G	C	5794.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr10	88717140	rs4244973	T	A	2138.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr10	88717154	rs3750823	C	T	1012.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:46,49:0.52:95
chr10	88718436	rs1800373	A	C	749.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:42,37:0.47:79
chr10	88719569	rs760112	G	A	1169.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:46,48:0.51:94
chr10	88719789	rs760113	C	G	4087.77	.	AC=1;AF=0.500;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	0/1:214,205:0.49:419
chr10	88722398	rs9864	A	T	3682.77	.	AC=1;AF=0.500;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	0/1:173,184:0.52:357
chr10	88722865	rs10232	C	T	2110.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:95,100:0.51:195
chr10	88730106	rs2279602	C	T	7630.77	.	AC=1;AF=0.500;AN=2;DB;DP=939;set=Intersection	GT:AD:AF:DP	0/1:551,383:0.41:934
chr10	88730177	rs2279601	A	G	8018.77	.	AC=1;AF=0.500;AN=2;DB;DP=990;set=Intersection	GT:AD:AF:DP	0/1:560,420:0.43:980
chr10	88730312	rs4869	T	C	7447.77	.	AC=1;AF=0.500;AN=2;DB;DP=893;set=Intersection	GT:AD:AF:DP	0/1:507,374:0.42:881
chr10	88730374	rs7960	C	T	6133.77	.	AC=1;AF=0.500;AN=2;DB;DP=682;set=Intersection	GT:AD:AF:DP	0/1:376,297:0.44:673
chr10	88768253	rs2641563	A	G	8786.77	.	AC=1;AF=0.500;AN=2;DB;DP=834;MQ=59.88;set=Intersection	GT:AD:AF:DP	0/1:402,430:0.52:832
chr10	88768657	rs1745901	C	T	6478.77	.	AC=1;AF=0.500;AN=2;DB;DP=643;set=Intersection	GT:AD:AF:DP	0/1:324,311:0.49:635
chr10	88817578	rs35186250	GA	G	287.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.161;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=0.931;QD=4.96;ReadPosRankSum=-0.681;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:28,30:0.52:58
chr10	88819133	rs2296062	T	C	1465.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:63,67:0.52:130
chr10	88828050	rs2296061	C	T	882.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:29,40:0.58:69
chr10	88835628	rs11202318	G	A	1904.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:76,91:0.54:167
chr10	88930249	rs11202365	A	T	4322.77	.	AC=1;AF=0.500;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	0/1:216,203:0.48:419
chr10	88935590	rs11202370	C	G	386.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:21,16:0.43:37
chr10	88939962	rs7081609	T	C	7436.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr10	88973990	.	G	A	2235.77	.	AC=1;AF=0.500;AN=2;DP=290;set=Intersection	GT:AD:AF:DP	0/1:174,115:0.40:289
chr10	89267957	rs3843597	C	T	3094.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr10	89269267	rs3843598	G	A	1628.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr10	89273012	rs41299159	T	A	717.73	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:42,41:0.49:83
chr10	89419638	.	C	CGCT	2138.73	.	AC=1;AF=0.500;AN=2;DP=298;set=Intersection	GT:AD:AF:DP	0/1:151,104:0.41:255
chr10	89419873	rs2255682	C	G	1971.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:76,81:0.52:157
chr10	89420561	.	GAAAAAAAAAAAAAA	G	932.73	.	AC=2;AF=1.00;AN=2;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.49;QD=44.42;SOR=4.712;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr10	89420587	rs9421661	A	C	1120.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr10	89420789	rs2762528	A	G	2972.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:171,146:0.46:317
chr10	89420898	rs10595979	TAA	T	336.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.887;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=6.383;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.02;ReadPosRankSum=-1.418;SOR=2.128;set=HC	GT:AD:AF:DP	0/1:31,17:0.35:48
chr10	89463460	rs7923151	G	C	2399.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:135,114:0.46:249
chr10	89469083	rs72025574	CATAT	C	1218.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.405;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=0.985;QD=17.17;ReadPosRankSum=-1.654;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:34,37:0.52:71
chr10	89472721	rs148721342	CT	C	639.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.047;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=3.382;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.46;ReadPosRankSum=0.219;SOR=1.149;set=HC	GT:AD:AF:DP	0/1:42,57:0.58:99
chr10	89475617	rs2302405	G	A	1328.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:74,63:0.46:137
chr10	89475640	rs3214322	GA	G	688.73	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:39,48:0.55:87
chr10	89475692	rs2302406	A	G	816.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:19,24:0.56:43
chr10	89475717	rs2302407	G	A	699.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:10,18:0.64:28
chr10	89653686	rs1903858	A	G	360.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.025;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.02;ReadPosRankSum=0.343;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:22,18:0.45:40
chr10	89690952	rs1799734	T	TTTATC	1298.73	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:26,34:0.57:60
chr10	89720633	rs34003473	C	CT	822.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.781;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.040;QD=5.45;ReadPosRankSum=-1.124;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:77,74:0.49:151
chr10	89720907	rs555895	T	G	1595.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:69,70:0.50:139
chr10	90034667	.	T	TA	177.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.087;ClippingRankSum=0.000;DP=275;ExcessHet=3.0103;FS=2.544;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=0.000;QD=0.73;ReadPosRankSum=-0.343;SOR=0.437;set=HC	GT:AD:AF:DP	0/1:200,44:0.18:244
chr10	90122512	rs3740279	C	T	867.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:28,39:0.58:67
chr10	90332928	rs41317024	T	G	905.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:23,35:0.60:58
chr10	90350888	rs10694823	G	GGTTT	418.73	.	AC=1;AF=0.500;AN=2;DB;DP=20;MQ=61.07;set=Intersection	GT:AD:AF:DP	0/1:9,11:0.55:20
chr10	90354589	rs11202781	A	G	1288.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:48,60:0.56:108
chr10	90356598	rs1409136	A	G	1023.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:69,55:0.44:124
chr10	90574957	rs61740492	G	C	6258.77	.	AC=1;AF=0.500;AN=2;DB;DP=647;set=Intersection	GT:AD:AF:DP	0/1:337,306:0.48:643
chr10	90585819	rs7893917	G	A	2580.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:131,128:0.49:259
chr10	90588154	rs1977537	A	G	1581.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.035;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=3.647;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.19;ReadPosRankSum=-0.621;SOR=0.332;set=HC	GT:AD:AF:DP	0/1:50,42:0.46:92
chr10	90588161	rs1029025	C	T	1700.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.290;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=3.241;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.01;ReadPosRankSum=-0.273;SOR=0.392;set=HC	GT:AD:AF:DP	0/1:53,47:0.47:100
chr10	90673024	rs12254856	G	A	6313.77	.	AC=1;AF=0.500;AN=2;DB;DP=596;set=Intersection	GT:AD:AF:DP	0/1:283,296:0.51:579
chr10	90674434	.	A	AATATAAATATATAT	404.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.158;ClippingRankSum=0.000;DP=60;ExcessHet=3.0103;FS=2.569;MLEAC=1;MLEAF=0.500;MQ=61.43;MQRankSum=2.238;QD=8.61;ReadPosRankSum=1.291;SOR=1.863;set=HC	GT:AD:AF:DP	0/1:31,16:0.34:47
chr10	90676384	rs201798892	A	AT	94.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.092;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=5.707;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.02;ReadPosRankSum=1.187;SOR=0.169;set=HC	GT:AD:AF:DP	0/1:35,12:0.26:47
chr10	90680951	rs139970435	T	TA	778.73	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:64,53:0.45:117
chr10	90683124	rs1530281	T	C	361.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:18,20:0.53:38
chr10	90701308	rs41284110	G	A	610.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:30,26:0.46:56
chr10	90733148	rs111980233	T	C	1074.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:29,44:0.60:73
chr10	90988250	rs2071509	C	G	345.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:14,15:0.52:29
chr10	91065949	rs17468739	A	C	5028.77	.	AC=1;AF=0.500;AN=2;DB;DP=504;set=Intersection	GT:AD:AF:DP	0/1:249,240:0.49:489
chr10	91066075	rs2070845	A	G	5265.77	.	AC=1;AF=0.500;AN=2;DB;DP=531;set=Intersection	GT:AD:AF:DP	0/1:286,242:0.46:528
chr10	91066460	rs954439	T	A	3963.77	.	AC=1;AF=0.500;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	0/1:236,185:0.44:421
chr10	91066769	rs1727	C	A	12058.77	.	AC=2;AF=1.00;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	1/1:0,425:1.00:425
chr10	91092189	rs12255504	C	G	1319.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:50,55:0.52:105
chr10	91099630	rs3780878	T	C	4881.77	.	AC=1;AF=0.500;AN=2;DB;DP=540;set=Intersection	GT:AD:AF:DP	0/1:282,247:0.47:529
chr10	91099943	rs10749607	C	G	436.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:40,20:0.33:60
chr10	91137826	rs304504	T	C	3890.77	.	AC=1;AF=0.500;AN=2;DB;DP=469;set=Intersection	GT:AD:AF:DP	0/1:260,205:0.44:465
chr10	91143529	rs304494	T	A	5196.77	.	AC=1;AF=0.500;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	0/1:189,238:0.56:427
chr10	91162497	rs303211	A	G	9399.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:0,338:1.00:338
chr10	91172663	rs304439	C	G	978.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:64,48:0.43:112
chr10	91178000	rs304448	C	T	6958.77	.	AC=1;AF=0.500;AN=2;DB;DP=777;set=Intersection	GT:AD:AF:DP	0/1:431,339:0.44:770
chr10	91352667	rs10509577	A	G	2867.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:119,130:0.52:249
chr10	91352966	rs2296616	G	A	6432.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:1,242:1.00:243
chr10	91371445	rs7896079	CG	AA	6428.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr10	91371844	rs3802655	C	T	3181.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr10	91373511	rs7079690	T	C	711.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr10	91373624	rs7091626	G	A	6216.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.72;SOR=1.001;set=HC	GT:AD:AF:DP	1/1:0,139:1.00:139
chr10	91373631	rs56160723	G	A	6349.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.79;SOR=0.886;set=HC	GT:AD:AF:DP	1/1:0,145:1.00:145
chr10	91373847	rs7076397	A	G	1673.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr10	91465266	rs72818759	G	A	1600.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:61,69:0.53:130
chr10	91468925	rs1129777	C	G	548.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:14,23:0.62:37
chr10	91473975	rs11185854	T	C	1315.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr10	91476465	rs3740035	T	C	89.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:8,5:0.38:13
chr10	91479211	rs17484219	G	T	528.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:40,26:0.39:66
chr10	91483908	rs7079174	G	C	1574.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr10	91483916	rs201777411	G	GT	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.155;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=1.482;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.84;ReadPosRankSum=1.392;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:36,9:0.20:45
chr10	91487649	rs12572012	A	T	1890.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:88,90:0.51:178
chr10	91488979	rs3758388	A	T	714.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:49,36:0.42:85
chr10	91498127	rs1886996	T	C	4094.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr10	91498626	rs12415422	T	C	1154.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:68,52:0.43:120
chr10	91505768	rs12414650	C	T	986.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:34,46:0.57:80
chr10	91510982	rs1326201	T	C	897.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr10	91522548	rs34354493	A	G	4567.77	.	AC=1;AF=0.500;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	0/1:216,223:0.51:439
chr10	91522605	rs3740038	G	C	6712.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr10	91522689	rs17127001	G	A	635.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:22,25:0.53:47
chr10	92638707	rs75192201	C	CAGT	1520.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr10	92672564	rs3939	T	C	3886.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr10	92676187	rs112074175	ATG	A	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.073;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.66;ReadPosRankSum=-0.598;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:68,10:0.13:78
chr10	92678740	rs72003210	AATAAATAAATATATATAT	A	20769.73	.	AC=2;AF=1.00;AN=2;DB;DP=494;set=Intersection	GT:AD:AF:DP	1/1:0,451:1.00:451
chr10	92678765	rs56177217	A	G	21211.77	.	AC=2;AF=1.00;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	1/1:0,477:1.00:477
chr10	92678789	rs191952911	T	C	4709.77	.	AC=1;AF=0.500;AN=2;DB;DP=555;MQ=60.04;set=Intersection	GT:AD:AF:DP	0/1:317,232:0.42:549
chr10	92680929	rs10881855	A	G	1787.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr10	92912588	rs12266933	G	A	5815.77	.	AC=1;AF=0.500;AN=2;DB;DP=565;set=Intersection	GT:AD:AF:DP	0/1:284,275:0.49:559
chr10	92912773	rs17553262	A	C	2703.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:147,136:0.48:283
chr10	93170250	rs7081569	C	G	2066.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr10	93170365	rs71025355	CG	C	1721.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr10	93702405	rs3814640	C	T	1386.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:68,64:0.48:132
chr10	93702443	rs3814639	G	A	877.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:43,39:0.48:82
chr10	93713405	rs12571564	T	G	799.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:36,30:0.45:66
chr10	93713758	rs11186768	T	G	898.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:37,35:0.49:72
chr10	93716899	rs7894570	G	C	939.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr10	93719497	rs10581040	GTATATATA	G	583.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.461;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=6.037;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.61;ReadPosRankSum=0.812;SOR=2.147;set=HC	GT:AD:AF:DP	0/1:28,27:0.49:55
chr10	93719499	rs28696856	A	G	282.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.132;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=1.290;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.02;ReadPosRankSum=1.368;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:34,13:0.28:47
chr10	93719501	rs369413838	A	G	54.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.556;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.24;ReadPosRankSum=1.111;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:36,8:0.18:44
chr10	93740429	rs2792022	T	C	871.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:42,43:0.51:85
chr10	93752074	rs112721454	GT	G	256.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.150;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.42;ReadPosRankSum=1.393;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:47,28:0.37:75
chr10	93754163	rs10882014	G	A	458.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:19,18:0.49:37
chr10	93767797	rs1711842	G	A	446.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:32,22:0.41:54
chr10	93768096	rs11186794	G	C	217.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.130;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.78;ReadPosRankSum=-0.606;SOR=0.838;set=HC	GT:AD:AF:DP	0/1:16,12:0.43:28
chr10	93771192	rs2676802	T	A	296.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.216;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.74;ReadPosRankSum=2.246;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:29,15:0.34:44
chr10	93776240	rs11400019	C	CT	119.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.020;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.42;ReadPosRankSum=-0.084;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:20,15:0.43:35
chr10	93778520	rs140447601	CT	C	2579.73	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:141,161:0.53:302
chr10	93784488	rs141297800	A	AGTTTTTTT	136.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.120;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.04;MQRankSum=-1.390;QD=4.88;ReadPosRankSum=1.488;SOR=0.324;set=HC	GT:AD:AF:DP	0/1:14,14:0.50:28
chr10	93784489	rs66512665	G	GTTTTTTTGT	97.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.987;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.01;MQRankSum=1.540;QD=3.37;ReadPosRankSum=-2.215;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:15,14:0.48:29
chr10	93786557	rs61876492	A	C	2929.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:137,135:0.50:272
chr10	93788516	rs10622641	A	ATT	1000.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.342;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=1.020;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.10;ReadPosRankSum=-0.634;SOR=0.884;set=HC	GT:AD:AF:DP	0/1:45,65:0.59:110
chr10	93812334	rs1711841	G	A	4545.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr10	93841227	rs2676811	A	G	8616.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:4,339:0.99:343
chr10	93851714	rs1229578	T	C	4875.77	.	AC=1;AF=0.500;AN=2;DB;DP=522;set=Intersection	GT:AD:AF:DP	0/1:264,250:0.49:514
chr10	94214359	rs4646958	T	A	477.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:28,22:0.44:50
chr10	94215457	rs11459510	C	CA	191.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.171;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=1.441;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.85;ReadPosRankSum=0.768;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:12,16:0.57:28
chr10	94229912	rs4646957	C	T	2047.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:84,89:0.51:173
chr10	94238929	rs35864975	T	TA	477.73	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:45,32:0.42:77
chr10	94266330	rs34053974	CT	C	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.178;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=1.138;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.696;QD=0.54;ReadPosRankSum=-0.477;SOR=0.865;set=HC	GT:AD:AF:DP	0/1:54,16:0.23:70
chr10	94268316	rs33917554	G	GA	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.406;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.83;ReadPosRankSum=2.273;SOR=0.193;set=HC	GT:AD:AF:DP	0/1:13,6:0.32:19
chr10	94268334	rs1832196	G	A	203.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.639;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=1.710;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.79;ReadPosRankSum=-1.375;SOR=0.333;set=HC	GT:AD:AF:DP	0/1:16,14:0.47:30
chr10	94333827	rs4646954	G	A	1393.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:64,63:0.50:127
chr10	94366347	rs11393423	A	AT	1623.14	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.120;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.09;MQRankSum=0.000;QD=14.11;ReadPosRankSum=1.145;SOR=0.597;set=HC	GT:AD:AF:DP	1/1:19,96:0.83:115
chr10	94372942	rs2275219	T	C	987.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:66,48:0.42:114
chr10	94392513	rs113828479	A	ATAATT	1401.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr10	94393630	rs11187108	T	G	320.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:11,13:0.54:24
chr10	94407865	rs34357393	CA	C	329.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.097;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=1.280;MLEAC=1;MLEAF=0.500;MQ=60.43;MQRankSum=1.401;QD=4.92;ReadPosRankSum=-1.275;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:33,34:0.51:67
chr10	94409800	rs6583833	C	T	1364.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:51,60:0.54:111
chr10	94449733	rs117639730	G	A	2311.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:96,98:0.51:194
chr10	94507612	rs2488066	A	G	15259.77	.	AC=2;AF=1.00;AN=2;DB;DP=605;set=Intersection	GT:AD:AF:DP	1/1:3,593:0.99:596
chr10	94511683	rs2096177	G	T	21096.77	.	AC=2;AF=1.00;AN=2;DB;DP=783;set=Intersection	GT:AD:AF:DP	1/1:0,774:1.00:774
chr10	94594565	rs2490741	G	A	12410.77	.	AC=2;AF=1.00;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	1/1:0,469:1.00:469
chr10	94700460	rs201561143	C	CT	131.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.096;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=2.343;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.51;ReadPosRankSum=0.943;SOR=0.400;set=HC	GT:AD:AF:DP	0/1:67,20:0.23:87
chr10	94816807	rs60582805	G	GA	6469.73	.	AC=2;AF=1.00;AN=2;DB;DP=235;MQ=60.05;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr10	94820860	rs1538648	A	G	2374.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:170,113:0.40:283
chr10	94822686	rs55843714	C	T	6028.77	.	AC=1;AF=0.500;AN=2;DB;DP=577;set=Intersection	GT:AD:AF:DP	0/1:284,285:0.50:569
chr10	94822895	rs12263200	G	T	4462.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:2,166:0.99:168
chr10	94826081	.	TCCTGCCG	T	990.73	.	AC=1;AF=0.500;AN=2;DP=129;set=Intersection	GT:AD:AF:DP	0/1:51,28:0.35:79
chr10	95070037	rs2761286	A	G	3899.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr10	95070080	rs2797581	C	T	2095.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr10	95070526	rs787661	G	A	2110.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr10	95072906	rs787666	T	C	9751.77	.	AC=2;AF=1.00;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	1/1:2,367:0.99:369
chr10	95073046	rs787667	A	G	1868.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:94,91:0.49:185
chr10	95083204	rs148815470	ATTTC	A	908.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr10	95089762	rs17477816	T	C	744.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:42,29:0.41:71
chr10	95095600	rs787689	G	C	5015.77	.	AC=1;AF=0.500;AN=2;DB;DP=484;set=Intersection	GT:AD:AF:DP	0/1:245,234:0.49:479
chr10	95095667	rs7097740	A	G	10198.77	.	AC=1;AF=0.500;AN=2;DB;DP=1077;set=Intersection	GT:AD:AF:DP	0/1:555,515:0.48:1070
chr10	95097537	rs1614065	T	C	4515.77	.	AC=1;AF=0.500;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	0/1:240,218:0.48:458
chr10	95098144	rs10786089	T	C	2975.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:105,138:0.57:243
chr10	95099849	rs2761329	G	A	689.73	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:52,33:0.39:85
chr10	95101480	rs1408031	C	T	223.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:10,10:0.50:20
chr10	95109737	rs2298158	G	A	2104.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:78,95:0.55:173
chr10	95123618	rs10882221	G	A	1052.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:29,41:0.59:70
chr10	95132905	rs787647	C	T	1785.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:48,72:0.60:120
chr10	95139526	rs10882229	A	G	904.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:40,41:0.51:81
chr10	95162113	rs2272177	G	C	1878.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:83,84:0.50:167
chr10	95162496	rs701875	A	T	234.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:24,16:0.40:40
chr10	95162525	rs3841653	TC	T	969.73	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:36,40:0.53:76
chr10	95164040	rs788088	A	G	2063.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr10	95168634	rs2296142	A	G	2372.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:104,111:0.52:215
chr10	95168735	rs2296143	C	G	432.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:26,17:0.40:43
chr10	95169583	rs3818352	T	C	2482.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:103,119:0.54:222
chr10	95216590	rs17481945	C	T	987.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:48,47:0.49:95
chr10	95216623	rs701882	A	G	1058.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:48,50:0.51:98
chr10	95237861	rs2096181	C	T	725.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr10	95237899	rs58873758	ATAT	A	1872.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.25;QD=43.55;SOR=1.455;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr10	95237963	rs3938769	A	G	3053.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr10	95238050	rs6583893	C	T	3703.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr10	95241999	rs947597	A	C	4920.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr10	95262981	rs7080916	A	G	9822.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:0,376:1.00:376
chr10	95266683	rs947599	A	G	9577.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	1/1:0,350:1.00:350
chr10	95276673	rs4919224	G	A	867.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:58,43:0.43:101
chr10	95278829	rs2280605	A	G	4846.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr10	95278841	rs2280606	C	T	4131.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr10	95279506	rs2293277	A	T	10264.77	.	AC=2;AF=1.00;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	1/1:0,378:1.00:378
chr10	95279653	rs7068719	A	G	1064.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr10	95287643	rs34668129	G	GA	1508.27	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:16,86:0.84:102
chr10	95347381	rs41290218	C	A	8169.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:1,284:1.00:285
chr10	95347475	rs17108973	C	T	2177.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr10	95353817	rs12265684	C	G	2573.77	.	AC=1;AF=0.500;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	0/1:213,137:0.39:350
chr10	95360027	rs36014035	A	C	2916.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:101,130:0.56:231
chr10	95360650	rs56401591	C	T	3252.77	.	AC=1;AF=0.500;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	0/1:199,159:0.44:358
chr10	95361588	rs3758539	C	T	789.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:31,38:0.55:69
chr10	95380790	rs1223306	G	A	1495.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:66,64:0.49:130
chr10	95381773	rs701865	T	A	6505.77	.	AC=1;AF=0.500;AN=2;DB;DP=613;set=Intersection	GT:AD:AF:DP	0/1:295,312:0.51:607
chr10	95386740	rs2785138	C	A	779.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:47,36:0.43:83
chr10	95388914	rs2857300	A	G	2760.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:115,127:0.52:242
chr10	95389041	rs714550	G	A	3797.77	.	AC=1;AF=0.500;AN=2;DB;DP=453;set=Intersection	GT:AD:AF:DP	0/1:255,195:0.43:450
chr10	95389083	rs714549	A	G	2513.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:162,121:0.43:283
chr10	95389124	rs714551	G	A	1292.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:91,59:0.39:150
chr10	95394455	rs1856563	T	C	3980.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr10	95395167	.	G	A	364.77	.	AC=1;AF=0.500;AN=2;DP=32;set=Intersection	GT:AD:AF:DP	0/1:17,15:0.47:32
chr10	95395247	rs616522	A	G	1523.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:80,76:0.49:156
chr10	95395364	rs3737228	C	G	3921.77	.	AC=1;AF=0.500;AN=2;DB;DP=489;set=Intersection	GT:AD:AF:DP	0/1:272,212:0.44:484
chr10	95399642	rs17485621	G	A	430.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:18,19:0.51:37
chr10	95400510	rs12780304	T	C	605.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:24,24:0.50:48
chr10	95405665	rs3831275	CTA	C	1463.73	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:57,40:0.41:97
chr10	95405814	rs1409332	C	A	4581.77	.	AC=1;AF=0.500;AN=2;DB;DP=470;set=Intersection	GT:AD:AF:DP	0/1:238,228:0.49:466
chr10	95422245	rs10882298	A	G	280.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:30,20:0.40:50
chr10	95432968	rs1572773	T	C	4485.77	.	AC=1;AF=0.500;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	0/1:158,188:0.54:346
chr10	95433124	rs1326214	A	G	8269.77	.	AC=1;AF=0.500;AN=2;DB;DP=787;set=Intersection	GT:AD:AF:DP	0/1:375,395:0.51:770
chr10	95436604	rs140546855	C	G	215.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:9,9:0.50:18
chr10	95443688	rs8181435	C	G	1439.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:86,69:0.45:155
chr10	95444931	rs767701	T	G	1384.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:47,61:0.56:108
chr10	95454449	rs11187593	C	T	831.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:31,34:0.52:65
chr10	95454681	rs2275438	G	C	1740.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:109,85:0.44:194
chr10	95454768	rs3215997	TA	T	90.73	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:23,10:0.30:33
chr10	95457831	rs144659491	C	CA	259.73	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:14,15:0.52:29
chr10	95458141	rs11187597	A	G	4394.77	.	AC=1;AF=0.500;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	0/1:221,219:0.50:440
chr10	95459698	rs2275441	G	C	525.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:23,23:0.50:46
chr10	95459817	rs726817	C	T	3508.77	.	AC=1;AF=0.500;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	0/1:197,179:0.48:376
chr10	95549836	rs368174638	C	CTT	1412.92	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.989;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.36;ReadPosRankSum=-0.309;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:9,64:0.88:73
chr10	95552653	rs1111820	T	C	14583.77	.	AC=2;AF=1.00;AN=2;DB;DP=567;set=Intersection	GT:AD:AF:DP	1/1:0,562:1.00:562
chr10	95658258	rs11187724	C	G	2427.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:90,100:0.53:190
chr10	95718474	rs829225	A	G	6459.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:2,231:0.99:233
chr10	95718600	rs11815169	T	C	5155.77	.	AC=1;AF=0.500;AN=2;DB;DP=536;set=Intersection	GT:AD:AF:DP	0/1:281,247:0.47:528
chr10	95720490	rs12570608	C	T	7060.77	.	AC=1;AF=0.500;AN=2;DB;DP=554;set=Intersection	GT:AD:AF:DP	0/1:239,303:0.56:542
chr10	95720501	rs12571819	T	C	7134.77	.	AC=1;AF=0.500;AN=2;DB;DP=578;set=Intersection	GT:AD:AF:DP	0/1:243,320:0.57:563
chr10	95791613	rs17109671	T	C	4388.77	.	AC=1;AF=0.500;AN=2;DB;DP=462;set=Intersection	GT:AD:AF:DP	0/1:245,209:0.46:454
chr10	95791763	rs17109674	G	A	5105.77	.	AC=1;AF=0.500;AN=2;DB;DP=500;set=Intersection	GT:AD:AF:DP	0/1:253,242:0.49:495
chr10	95892129	rs17508082	T	A	3669.77	.	AC=1;AF=0.500;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	0/1:198,191:0.49:389
chr10	95987313	rs11187825	C	T	1365.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr10	95993716	rs12249757	T	C	268.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.588;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.73;MQRankSum=1.244;QD=7.90;ReadPosRankSum=0.883;SOR=0.948;set=HC	GT:AD:AF:DP	0/1:20,14:0.41:34
chr10	96013824	rs1408820	C	T	597.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:32,26:0.45:58
chr10	96014622	rs10786156	C	G	6008.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:2,219:0.99:221
chr10	96018510	rs4918182	A	T	1023.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:44,45:0.51:89
chr10	96019042	rs369272321	AT	A	140.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.384;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=5.581;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=1.390;QD=2.81;ReadPosRankSum=-2.397;SOR=2.535;set=HC	GT:AD:AF:DP	0/1:30,20:0.40:50
chr10	96022618	rs11307441	GT	G	440.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.806;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=3.198;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=0.985;QD=6.12;ReadPosRankSum=0.771;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:37,35:0.49:72
chr10	96025491	rs3740360	A	C	2925.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:135,129:0.49:264
chr10	96028656	rs142022516	C	T	826.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:40,38:0.49:78
chr10	96028851	.	CTTTT	C	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.184;ClippingRankSum=-0.000;DP=41;ExcessHet=3.0103;FS=7.404;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.98;ReadPosRankSum=0.789;SOR=2.793;set=HC	GT:AD:AF:DP	0/1:9,3:0.25:12
chr10	96030458	rs1969867	G	T	1077.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:46,50:0.52:96
chr10	96039597	rs2274224	G	C	6273.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr10	96039708	rs2274225	C	T	574.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:36,25:0.41:61
chr10	96043732	rs7084339	A	G	7969.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chr10	96053239	rs3740365	T	A	2431.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:114,120:0.51:234
chr10	96058298	rs3765524	C	T	18329.77	.	AC=2;AF=1.00;AN=2;DB;DP=685;set=Intersection	GT:AD:AF:DP	1/1:2,678:1.00:680
chr10	96058433	rs17516758	G	A	2537.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:121,108:0.47:229
chr10	96064168	rs3818432	C	A	1166.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:1,41:0.98:42
chr10	96066341	rs2274223	A	G	14832.77	.	AC=2;AF=1.00;AN=2;DB;DP=562;set=Intersection	GT:AD:AF:DP	1/1:4,556:0.99:560
chr10	96068480	rs11187850	A	G	7189.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:2,244:0.99:246
chr10	96084372	rs3831084	A	AT	1533.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr10	96087728	rs3203713	A	G	1302.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:81,63:0.44:144
chr10	96087866	rs11187870	G	C	488.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:18,25:0.58:43
chr10	96098373	rs17517578	C	T	5501.77	.	AC=1;AF=0.500;AN=2;DB;DP=593;set=Intersection	GT:AD:AF:DP	0/1:310,271:0.47:581
chr10	96100119	rs3740359	C	T	764.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:40,39:0.49:79
chr10	96100257	rs34713827	TA	T	44.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.903;ClippingRankSum=-0.000;DB;DP=18;ExcessHet=3.0103;FS=11.761;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.47;ReadPosRankSum=-0.536;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:7,3:0.30:10
chr10	96104086	rs17439123	G	A	804.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:35,34:0.49:69
chr10	96106025	rs11187894	C	T	438.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr10	96106240	rs11187895	G	C	767.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:23,39:0.63:62
chr10	96109325	rs7085378	C	A	819.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr10	96112233	rs7092226	T	G	589.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr10	96112261	rs141353669	AAAAAAAC	A	292.73	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:16,9:0.36:25
chr10	96114640	rs71482303	T	C	732.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:26,33:0.56:59
chr10	96116419	rs12771562	GA	AG	993.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;JOINED;set=Intersection	GT:AD:AF:DP	0/1:50,50:0.50:100
chr10	96122543	rs7100430	A	G	9021.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:0,325:1.00:325
chr10	96163039	rs2477534	C	G	1212.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:52,59:0.53:111
chr10	96201820	rs12246393	C	T	3364.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.967;ClippingRankSum=0.000;DB;DP=302;ExcessHet=3.0103;FS=4.772;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=11.37;ReadPosRankSum=-1.295;SOR=0.474;set=HC	GT:AD:AF:DP	0/1:134,162:0.55:296
chr10	96256984	.	CT	C	125.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.028;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=1.322;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=1.513;QD=2.73;ReadPosRankSum=1.324;SOR=0.374;set=HC	GT:AD:AF:DP	0/1:30,16:0.35:46
chr10	96271298	rs2860761	A	C	1581.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr10	96292988	rs12260063	T	A	313.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:24,15:0.38:39
chr10	96305486	rs113423067	G	A	665.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.856;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.54;ReadPosRankSum=0.661;SOR=1.040;set=HC	GT:AD:AF:DP	0/1:33,45:0.58:78
chr10	96317838	rs200645462	G	GT	455.73	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:36,31:0.46:67
chr10	96343623	rs962234	T	C	589.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr10	96353422	rs11346357	AT	A	816.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.323;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=1.378;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.21;ReadPosRankSum=-0.263;SOR=1.148;set=HC	GT:AD:AF:DP	0/1:18,62:0.78:80
chr10	96448129	rs1926706	A	G	525.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:23,22:0.49:45
chr10	96466824	rs7904929	C	T	932.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr10	96698690	rs9332104	T	C	494.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:17,23:0.57:40
chr10	96802598	rs2275620	A	T	1809.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:109,90:0.45:199
chr10	96824738	rs7098376	A	T	130.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.302;ClippingRankSum=-0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.99;MQRankSum=-0.000;QD=7.26;ReadPosRankSum=-0.804;SOR=1.781;set=HC	GT:AD:AF:DP	0/1:9,9:0.50:18
chr10	96827178	rs2275622	T	C	10204.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	1/1:0,377:1.00:377
chr10	96828323	rs2071426	T	C	2036.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.530;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=2.788;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.42;ReadPosRankSum=-1.399;SOR=0.928;set=HC	GT:AD:AF:DP	0/1:70,94:0.57:164
chr10	96954298	rs591157	A	G	7612.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr10	96954360	rs11188225	T	A	5044.77	.	AC=1;AF=0.500;AN=2;DB;DP=469;set=Intersection	GT:AD:AF:DP	0/1:222,240:0.52:462
chr10	96954473	rs592041	A	T	9304.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.29;SOR=1.546;set=HC	GT:AD:AF:DP	1/1:0,220:1.00:220
chr10	96954479	rs592055	G	A	9019.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.21;SOR=1.529;set=HC	GT:AD:AF:DP	1/1:0,204:1.00:204
chr10	96954511	rs681838	T	A	3635.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr10	96961184	rs602941	G	A	1631.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr10	96966954	rs58102963	GT	G	8548.73	.	AC=2;AF=1.00;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	1/1:2,366:0.99:368
chr10	96970361	rs16872	A	C	12352.77	.	AC=2;AF=1.00;AN=2;DB;DP=466;set=Intersection	GT:AD:AF:DP	1/1:0,455:1.00:455
chr10	96972889	rs17524438	G	A	1549.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:47,63:0.57:110
chr10	96974518	rs595478	A	T	1176.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr10	96974552	rs595420	C	T	2414.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr10	96974803	rs594448	A	G	7607.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr10	96979504	rs11188228	T	C	690.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:27,26:0.49:53
chr10	96979775	rs11188229	C	G	1716.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:71,79:0.53:150
chr10	96985198	rs489807	G	A	3524.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr10	96997589	rs1049961	A	G	1114.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:46,51:0.53:97
chr10	96998458	rs2901832	C	T	2305.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.082;ClippingRankSum=0.000;DB;DP=355;ExcessHet=3.0103;FS=3.569;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.59;ReadPosRankSum=-0.839;SOR=0.844;set=HC	GT:AD:AF:DP	0/1:222,128:0.37:350
chr10	96998519	rs2860998	T	C	2752.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:164,131:0.44:295
chr10	96998591	rs2901833	G	A	1329.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:66,62:0.48:128
chr10	96998625	rs12778613	T	C	887.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:31,35:0.53:66
chr10	96998648	rs2860999	G	A	501.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:22,21:0.49:43
chr10	97023541	rs4918908	C	A	548.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:41,24:0.37:65
chr10	97023552	rs4917682	G	A	723.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:44,33:0.43:77
chr10	97023630	rs2296961	T	C	1878.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:107,87:0.45:194
chr10	97023895	rs2296962	C	T	332.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:12,15:0.56:27
chr10	97101532	rs2274628	G	A	866.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:39,37:0.49:76
chr10	97110879	rs6583995	C	T	469.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:12,20:0.62:32
chr10	97116219	rs7076888	C	T	4538.77	.	AC=1;AF=0.500;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	0/1:244,214:0.47:458
chr10	97127264	rs6583997	T	C	627.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:28,24:0.46:52
chr10	97127462	rs6583998	C	A	2116.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:143,110:0.43:253
chr10	97127577	rs7074224	C	T	420.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:17,18:0.51:35
chr10	97137021	rs77195353	G	A	4478.77	.	AC=1;AF=0.500;AN=2;DB;DP=474;set=Intersection	GT:AD:AF:DP	0/1:239,229:0.49:468
chr10	97137105	rs1536556	A	G	4216.77	.	AC=1;AF=0.500;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	0/1:202,202:0.50:404
chr10	97141523	rs2274490	G	A	3557.77	.	AC=1;AF=0.500;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	0/1:165,173:0.51:338
chr10	97154682	rs55688714	A	T	1135.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:51,49:0.49:100
chr10	97154698	rs11188311	G	A	1536.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:66,69:0.51:135
chr10	97158713	rs2274489	G	A	1052.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:53,49:0.48:102
chr10	97181855	rs17849163	T	C	1847.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:79,85:0.52:164
chr10	97192324	rs943542	A	G	9653.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	1/1:0,358:1.00:358
chr10	97366746	rs7099284	C	T	1375.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr10	97369939	rs10882640	C	T	6505.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr10	97370989	rs2296691	T	A	2366.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:1,82:0.99:83
chr10	97371317	rs11188399	A	G	2363.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.47;SOR=2.428;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr10	97371327	rs11188400	C	G	2205.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.93;SOR=3.033;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr10	97373966	rs2296692	A	C	3829.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:1,124:0.99:125
chr10	97381077	.	C	CTT	241.74	.	AC=2;AF=1.00;AN=2;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.54;QD=20.14;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr10	97392969	rs3750701	G	A	6825.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr10	97392993	rs3750700	T	C	5340.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr10	97397227	rs2275273	T	C	5227.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr10	97397344	rs11188411	T	C	960.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr10	97412921	rs9787589	T	G	2379.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr10	97440097	.	TCA	T	1337	.	AC=1;AF=0.500;AN=2;BRF=0.09;FR=0.5000;HP=2;HapScore=2;MGOF=3;MMLQ=28;MQ=60.0;NF=9;NR=1;PP=1337;QD=138.0;SC=TTATGTCAGCTCACTTTAAAC;SbPval=0.54;Source=Platypus;TC=26;TCF=24;TCR=2;TR=10;WE=97440116;WS=97440094;set=Platypus	GT:AD:AF:DP	0/1:16,10:0.38:26
chr10	97440098	.	CACT	C	577.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.077;ClippingRankSum=0.000;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.64;ReadPosRankSum=-0.021;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:16,15:0.48:31
chr10	97440103	.	T	TGG	658.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.392;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.82;ReadPosRankSum=-0.688;SOR=0.536;set=HC	GT:AD:AF:DP	0/1:19,16:0.46:35
chr10	97440106	.	A	G	748.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.260;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;FS=2.183;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.72;ReadPosRankSum=-0.638;SOR=0.184;set=HC	GT:AD:AF:DP	0/1:20,20:0.50:40
chr10	97440107	.	CA	C	739.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.616;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;FS=1.786;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.04;ReadPosRankSum=-0.275;SOR=0.375;set=HC	GT:AD:AF:DP	0/1:21,20:0.49:41
chr10	97440535	.	C	CT	47.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.200;ClippingRankSum=-0.000;DP=20;ExcessHet=3.0103;FS=5.119;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.98;ReadPosRankSum=3.650;SOR=0.111;set=HC	GT:AD:AF:DP	0/1:7,9:0.56:16
chr10	97442995	rs17461546	A	G	3548.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:136,156:0.53:292
chr10	97446206	rs2297788	G	A	3393.77	.	AC=1;AF=0.500;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	0/1:206,167:0.45:373
chr10	97447373	rs10786229	A	T	4438.77	.	AC=1;AF=0.500;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	0/1:190,209:0.52:399
chr10	97447487	rs11188434	T	A	1778.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:69,78:0.53:147
chr10	97471925	rs12244559	T	C	350.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:15,18:0.55:33
chr10	97602091	rs3181131	T	C	1205.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:74,56:0.43:130
chr10	97605057	rs7074403	C	G	1726.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:60,72:0.55:132
chr10	97607165	rs3181122	G	A	2666.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:106,113:0.52:219
chr10	97687184	rs56365500	A	G	3688.77	.	AC=1;AF=0.500;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	0/1:163,166:0.50:329
chr10	97698370	rs4918979	C	T	1075.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:90,56:0.38:146
chr10	97748040	rs7900838	G	A	1735.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:53,81:0.60:134
chr10	97769856	rs4145209	G	C	1117.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:37,44:0.54:81
chr10	97772253	rs3748224	C	T	751.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:31,35:0.53:66
chr10	97772496	rs10748652	T	A	877.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:37,41:0.53:78
chr10	97778853	rs1414922	C	T	220.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:18,10:0.36:28
chr10	97779219	rs1414921	G	A	509.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:17,20:0.54:37
chr10	97792352	rs10509698	G	A	196.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:17,10:0.37:27
chr10	97816420	rs7099399	G	A	7460.77	.	AC=1;AF=0.500;AN=2;DB;DP=800;set=Intersection	GT:AD:AF:DP	0/1:421,372:0.47:793
chr10	97917843	rs61731060	C	T	5341.77	.	AC=1;AF=0.500;AN=2;DB;DP=504;set=Intersection	GT:AD:AF:DP	0/1:252,246:0.49:498
chr10	97919550	rs61729856	T	G	2940.77	.	AC=1;AF=0.500;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	0/1:207,155:0.43:362
chr10	97919839	rs41291606	A	T	1601.73	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:69,87:0.56:156
chr10	97920099	rs67530050	T	TC	22306.73	.	AC=2;AF=1.00;AN=2;DB;DP=606;set=Intersection	GT:AD:AF:DP	1/1:0,597:1.00:597
chr10	97956902	rs10491068	C	G	216.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:11,11:0.50:22
chr10	97959756	.	T	C	904.77	.	AC=1;AF=0.500;AN=2;DP=100;set=Intersection	GT:AD:AF:DP	0/1:49,43:0.47:92
chr10	97964154	rs10748665	C	T	3235.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.52;SOR=2.861;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr10	97964154	.	CGTA	TGTA,TGTG	823	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.3;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=1;MMLQ=27;MQ=60.0;NF=63,33;NR=13,9;PP=617,823;QD=8.5759370072;SC=CCTTTTAACACGTAACTGCAA;SbPval=0.58;Source=Platypus;TC=79;TCF=65;TCR=14;TR=76,42;WE=97964165;WS=97964144;set=Platypus	GT:AF:DP	0/1:0.96:79
chr10	97964157	rs2242137	A	G	1220.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.324;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=2.312;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.03;ReadPosRankSum=0.235;SOR=0.389;set=HC	GT:AD:AF:DP	0/1:38,49:0.56:87
chr10	97983526	rs10882746	C	T	896.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr10	97987144	rs2305846	C	G	3540.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr10	97990583	rs727852	A	G	6730.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr10	98006857	rs2168732	A	T	1355.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr10	98007247	rs117567726	A	G	868.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:27,38:0.58:65
chr10	98007727	rs10882762	A	G	577.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:32,25:0.44:57
chr10	98007933	rs9663433	G	A	2075.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.324;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=1.466;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.97;ReadPosRankSum=0.616;SOR=0.524;set=HC	GT:AD:AF:DP	0/1:69,61:0.47:130
chr10	98007943	rs9664029	T	A	1816.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.130;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=3.975;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.64;ReadPosRankSum=0.289;SOR=0.393;set=HC	GT:AD:AF:DP	0/1:55,48:0.47:103
chr10	98078127	rs7081385	C	T	2972.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr10	98078239	rs6584066	A	G	11528.77	.	AC=2;AF=1.00;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	1/1:0,432:1.00:432
chr10	98082517	rs7097016	T	G	1422.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr10	98084231	rs2181320	A	G	3399.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr10	98088387	rs10882773	A	C	482.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr10	98095794	rs10736102	T	C	6146.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr10	98105618	rs56148171	A	C	1053.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:38,43:0.53:81
chr10	98111279	rs2146392	C	T	270.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:3,12:0.80:15
chr10	98116076	rs2861575	C	T	541.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:24,21:0.47:45
chr10	98127809	rs41291624	A	C	1716.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:72,75:0.51:147
chr10	98138978	rs28438557	G	T	758.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:48,35:0.42:83
chr10	98144312	rs7085022	G	A	2382.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr10	98146654	rs12252784	C	G	4506.77	.	AC=1;AF=0.500;AN=2;DB;DP=554;set=Intersection	GT:AD:AF:DP	0/1:315,233:0.43:548
chr10	98180613	rs3789951	A	G	958.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:30,36:0.55:66
chr10	98180644	rs3789952	C	T	1344.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:49,54:0.52:103
chr10	98180958	rs3789954	T	C	897.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:50,36:0.42:86
chr10	98240035	rs2281801	A	T	1822.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr10	98240382	rs243	G	A	1724.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr10	98287094	rs10786298	T	A	3148.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr10	98287150	rs3789958	A	G	1343.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:79,61:0.44:140
chr10	98287261	rs3789957	G	C	2350.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:84,115:0.58:199
chr10	98287792	rs12779720	G	T	5239.77	.	AC=1;AF=0.500;AN=2;DB;DP=607;set=Intersection	GT:AD:AF:DP	0/1:341,255:0.43:596
chr10	98311190	rs10882816	G	T	2231.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:124,106:0.46:230
chr10	98312891	rs10736113	C	T	3150.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr10	98319236	rs10128106	G	T	283.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:5,11:0.69:16
chr10	98319367	rs3818389	A	T	1460.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:59,71:0.55:130
chr10	98319503	rs3818390	A	T	572.73	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:19,31:0.62:50
chr10	98321928	rs7094142	A	T	1609.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr10	98321973	.	G	GTTT	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.120;ClippingRankSum=0.000;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.21;ReadPosRankSum=0.426;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:10,3:0.23:13
chr10	98325237	.	T	TA	145.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.672;ClippingRankSum=0.000;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.749;QD=1.76;ReadPosRankSum=2.293;SOR=0.553;set=HC	GT:AD:AF:DP	0/1:62,21:0.25:83
chr10	98336613	rs35616822	T	TA	942.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.937;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=4.068;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.991;QD=7.60;ReadPosRankSum=1.017;SOR=0.387;set=HC	GT:AD:AF:DP	0/1:59,65:0.52:124
chr10	98346411	rs11188836	A	C	1691.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr10	98346636	rs199747093	TC	T	1397.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.620;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=0.811;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=0.000;QD=15.70;ReadPosRankSum=3.213;SOR=0.541;set=HC	GT:AD:AF:DP	0/1:51,38:0.43:89
chr10	98346649	rs1062176	T	G	1670.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.951;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=1.912;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.000;QD=16.38;ReadPosRankSum=1.917;SOR=0.464;set=HC	GT:AD:AF:DP	0/1:52,50:0.49:102
chr10	98369536	rs3748236	A	G	3517.77	.	AC=1;AF=0.500;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	0/1:204,182:0.47:386
chr10	98369755	rs41317270	C	T	592.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:20,26:0.57:46
chr10	98380074	rs78780339	T	C	1136.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:52,55:0.51:107
chr10	98380277	rs3748234	C	T	514.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:20,25:0.56:45
chr10	98380363	rs7910630	A	G	158.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr10	98383329	rs4917745	G	T	6132.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr10	98386433	rs1469847	C	A	2126.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr10	98386558	rs4344416	G	A	13177.77	.	AC=2;AF=1.00;AN=2;DB;DP=491;set=Intersection	GT:AD:AF:DP	1/1:0,487:1.00:487
chr10	98392872	rs6584092	A	C	726.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr10	98408714	rs912483	A	G	2647.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr10	98408752	.	TCTAACAG	T	760.73	.	AC=1;AF=0.500;AN=2;DP=51;set=Intersection	GT:AD:AF:DP	0/1:28,21:0.43:49
chr10	98416533	rs3748231	C	T	991.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:25,43:0.63:68
chr10	98778574	rs140956481	CTTCA	C	1265.73	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:36,35:0.49:71
chr10	98778941	rs57812299	A	G	1427.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:63,66:0.51:129
chr10	98797351	rs2805586	A	G	3775.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr10	98797647	rs34707456	G	T	219.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:29,14:0.33:43
chr10	98808866	rs2805588	C	G	12620.77	.	AC=2;AF=1.00;AN=2;DB;DP=467;set=Intersection	GT:AD:AF:DP	1/1:0,464:1.00:464
chr10	98817687	rs7914872	A	G	9093.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:0,327:1.00:327
chr10	98820528	rs33970910	C	G	10339.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	1/1:0,378:1.00:378
chr10	98825940	rs1106375	G	A	1788.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:74,84:0.53:158
chr10	98923361	rs2636772	T	C	2513.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr10	98979111	rs10714841	AT	A	284.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr10	98988759	rs1468069	A	C	2319.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr10	98989454	rs2297987	A	G	5592.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr10	99003613	rs793528	A	C	844.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr10	99019144	rs3740522	C	T	11139.77	.	AC=2;AF=1.00;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	1/1:0,409:1.00:409
chr10	99019177	rs2253301	A	G	12839.77	.	AC=2;AF=1.00;AN=2;DB;DP=492;set=Intersection	GT:AD:AF:DP	1/1:0,488:1.00:488
chr10	99025611	rs10882884	T	A	4225.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:1,148:0.99:149
chr10	99079023	rs11189127	G	A	717.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr10	99116903	rs1048445	C	T	8425.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:2,319:0.99:321
chr10	99117097	rs7923385	T	A	1191.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr10	99118382	rs2297988	T	C	12232.77	.	AC=2;AF=1.00;AN=2;DB;DP=465;set=Intersection	GT:AD:AF:DP	1/1:2,462:1.00:464
chr10	99123457	rs11189165	A	G	4586.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr10	99125722	rs11189167	A	G	3227.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr10	99125769	rs11189168	T	C	9054.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr10	99125788	rs10882907	G	C	10958.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:2,278:0.99:280
chr10	99125854	rs376679815	G	A	708.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.468;ClippingRankSum=0.000;DB;DP=581;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.23;ReadPosRankSum=1.219;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:481,93:0.16:574
chr10	99126249	rs2275581	G	A	15274.77	.	AC=2;AF=1.00;AN=2;DB;DP=574;set=Intersection	GT:AD:AF:DP	1/1:1,569:1.00:570
chr10	99130127	rs3737194	A	G	6608.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr10	99139600	rs11189174	C	G	1323.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.37;SOR=4.047;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr10	99140511	rs7078004	A	G	11232.77	.	AC=2;AF=1.00;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	1/1:1,412:1.00:413
chr10	99140969	rs7096801	T	C	2425.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr10	99141205	rs2275089	A	G	14429.77	.	AC=2;AF=1.00;AN=2;DB;DP=543;set=Intersection	GT:AD:AF:DP	1/1:0,538:1.00:538
chr10	99141484	rs12218483	C	T	17152.77	.	AC=2;AF=1.00;AN=2;DB;DP=648;set=Intersection	GT:AD:AF:DP	1/1:0,647:1.00:647
chr10	99141663	rs11189177	C	T	2342.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr10	99144832	.	CCCCCCACCTCGGCAGCCTGGACACAGGCCCTGAGCA	C	2998.73	.	AC=2;AF=1.00;AN=2;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr10	99145179	rs3818787	T	C	969.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr10	99145616	rs75905387	G	A	2007.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr10	99147975	rs869967	T	C	2408.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr10	99148151	rs2275090	A	G	8794.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:1,320:1.00:321
chr10	99153540	rs7898743	T	G	1820.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr10	99155984	rs3814553	G	A	11117.77	.	AC=2;AF=1.00;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	1/1:2,413:1.00:415
chr10	99156273	rs11189200	C	G	1485.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr10	99160046	rs2297668	C	T	10053.77	.	AC=2;AF=1.00;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chr10	99160152	rs1048442	A	G	20497.77	.	AC=2;AF=1.00;AN=2;DB;DP=752;set=Intersection	GT:AD:AF:DP	1/1:0,737:1.00:737
chr10	99160965	rs2275091	A	G	21885.77	.	AC=2;AF=1.00;AN=2;DB;DP=808;set=Intersection	GT:AD:AF:DP	1/1:0,802:1.00:802
chr10	99185672	.	G	A	1006	.	AC=1;AF=0.500;AN=2;BRF=0.48;FR=0.5000;HP=5;HapScore=4;MGOF=38;MMLQ=24;MQ=55.76;NF=0;NR=15;PP=1006;QD=69.3847475031;SC=ACAACCCGCCGCCCGCCGCCC;SbPval=1.0;Source=Platypus;TC=30;TCF=1;TCR=29;TR=15;WE=99185705;WS=99185670;set=Platypus	GT:AD:AF:DP	1/0:15,15:0.50:30
chr10	99215953	rs3818909	G	C	3981.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr10	99216432	rs10882939	C	T	4181.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr10	99219404	rs29001331	TG	T	13334.73	.	AC=2;AF=1.00;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	1/1:0,337:1.00:337
chr10	99219885	rs2152092	G	A	9191.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chr10	99229394	rs2275583	G	A	5345.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr10	99240048	rs7897727	C	T	1862.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr10	99240758	rs2275586	G	C	3138.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr10	99258223	rs3750558	T	G	11760.77	.	AC=2;AF=1.00;AN=2;DB;DP=454;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.61;SOR=0.848;set=HC	GT:AD:AF:DP	1/1:0,442:1.00:442
chr10	99332488	rs12221474	A	C	2191.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr10	99337473	rs10786357	T	C	2527.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr10	99342563	rs3818910	T	C	3564.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr10	99350017	rs7093840	G	C	13331.77	.	AC=2;AF=1.00;AN=2;DB;DP=511;set=Intersection	GT:AD:AF:DP	1/1:1,503:1.00:504
chr10	99350128	rs7093643	A	G	9204.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr10	99359359	.	T	C	948.77	.	AC=1;AF=0.500;AN=2;DP=70;set=Intersection	GT:AD:AF:DP	0/1:32,38:0.54:70
chr10	99359406	rs75929214	C	T	3675.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr10	99376092	rs3814555	T	C	4283.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr10	99376152	rs3814556	A	G	3951.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr10	99376843	rs4919121	A	C	4555.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr10	99393234	rs11189303	G	A	21480.77	.	AC=2;AF=1.00;AN=2;DB;DP=827;set=Intersection	GT:AD:AF:DP	1/1:0,812:1.00:812
chr10	99410790	rs7915721	T	C	6160.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr10	99416303	rs1889475	T	C	1500.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr10	99422648	rs7905087	A	G	25488.77	.	AC=2;AF=1.00;AN=2;DB;DP=963;set=Intersection	GT:AD:AF:DP	1/1:0,953:1.00:953
chr10	99426415	rs3750562	G	A	2099.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr10	99426975	rs4254004	C	T	1173.73	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:4,49:0.92:53
chr10	99437822	rs3750564	A	G	3109.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:1,117:0.99:118
chr10	99439541	rs2275047	G	C	15191.77	.	AC=2;AF=1.00;AN=2;DB;DP=573;set=Intersection	GT:AD:AF:DP	1/1:0,569:1.00:569
chr10	99439688	rs2151930	A	G	4745.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr10	99439703	rs11595249	A	T	4659.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr10	99439724	rs2151931	C	T	3792.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr10	99473666	rs11189342	C	G	572.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:44,29:0.40:73
chr10	99498234	rs3818876	G	A	3015.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr10	99504630	rs10882993	G	T	4861.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr10	99504725	rs10882994	A	G	1629.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr10	99507869	rs11189352	T	C	3559.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:143,154:0.52:297
chr10	99509457	rs946778	T	G	545.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:18,21:0.54:39
chr10	99509969	rs3750615	T	C	1164.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:44,49:0.53:93
chr10	99510068	rs3750614	G	T	3606.77	.	AC=1;AF=0.500;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	0/1:196,192:0.49:388
chr10	99510284	rs3829137	T	C	638.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:40,27:0.40:67
chr10	99512472	rs1538723	T	C	804.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:56,42:0.43:98
chr10	99514645	rs7922907	A	G	900.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:42,39:0.48:81
chr10	99516955	rs10882995	G	A	1294.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:56,60:0.52:116
chr10	99517355	rs3750612	A	G	5807.77	.	AC=1;AF=0.500;AN=2;DB;DP=536;set=Intersection	GT:AD:AF:DP	0/1:256,271:0.51:527
chr10	99518810	rs1981238	C	T	691.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:31,32:0.51:63
chr10	99518874	rs10882996	G	A	1667.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.271;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=1.787;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.01;ReadPosRankSum=0.121;SOR=0.519;set=HC	GT:AD:AF:DP	0/1:89,96:0.52:185
chr10	99518901	rs12412543	G	C	3005.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:151,143:0.49:294
chr10	99519097	rs1981237	A	G	2034.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:101,91:0.47:192
chr10	99531284	rs143647630	C	T	5536.77	.	AC=1;AF=0.500;AN=2;DB;DP=509;set=Intersection	GT:AD:AF:DP	0/1:241,256:0.52:497
chr10	99531571	rs11815012	C	G	501.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.284;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=1.128;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.84;ReadPosRankSum=0.560;SOR=0.500;set=HC	GT:AD:AF:DP	0/1:26,25:0.49:51
chr10	99642731	rs588061	C	T	3224.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr10	99682981	rs894375	T	C	8408.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr10	99968831	.	C	T	6568.77	.	AC=1;AF=0.500;AN=2;DP=595;set=Intersection	GT:AD:AF:DP	0/1:275,305:0.53:580
chr10	99971224	rs72826282	A	G	1281.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:61,50:0.45:111
chr10	99991408	rs1952061	A	G	4466.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr10	100003785	rs1359508	T	C	1411.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:44,61:0.58:105
chr10	100011077	rs11189523	T	A	1304.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:70,58:0.45:128
chr10	100011970	rs3750598	G	A	604.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:38,30:0.44:68
chr10	100012011	rs10748722	C	T	3636.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr10	100013244	rs3750599	A	C	1546.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:60,64:0.52:124
chr10	100015563	rs3763688	G	C	4471.77	.	AC=1;AF=0.500;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	0/1:226,201:0.47:427
chr10	100017453	rs1983864	T	G	12941.77	.	AC=1;AF=0.500;AN=2;DB;DP=1224;set=Intersection	GT:AD:AF:DP	0/1:606,611:0.50:1217
chr10	100018844	rs7077073	G	A	1464.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:82,73:0.47:155
chr10	100020880	rs33995374	C	T	4188.77	.	AC=1;AF=0.500;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	0/1:182,190:0.51:372
chr10	100021983	rs746257	G	A	3448.77	.	AC=1;AF=0.500;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	0/1:190,169:0.47:359
chr10	100022446	rs10736125	A	G	1815.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr10	100022917	rs112780536	A	ATG	1491.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.455;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=3.189;MLEAC=1;MLEAF=0.500;MQ=60.46;MQRankSum=0.622;QD=29.25;ReadPosRankSum=-1.063;SOR=2.179;set=HC	GT:AD:AF:DP	0/1:5,46:0.90:51
chr10	100146895	rs2296438	T	C	703.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:42,31:0.42:73
chr10	100147060	rs4345897	A	G	2546.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:178,134:0.43:312
chr10	100148004	rs2182169	T	C	1101.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:39,48:0.55:87
chr10	100148058	rs4539242	T	C	2714.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:90,116:0.56:206
chr10	100148176	rs2147896	A	G	5682.77	.	AC=1;AF=0.500;AN=2;DB;DP=600;set=Intersection	GT:AD:AF:DP	0/1:298,287:0.49:585
chr10	100148308	rs2147895	T	G	1929.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:116,88:0.43:204
chr10	100148353	rs2182168	C	G	889.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:40,36:0.47:76
chr10	100150938	rs17109620	G	A	419.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:29,20:0.41:49
chr10	100152177	rs41290480	C	T	2025.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:106,90:0.46:196
chr10	100152373	rs6584192	T	G	3653.77	.	AC=1;AF=0.500;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	0/1:185,173:0.48:358
chr10	100152560	rs60153449	C	A	834.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:48,38:0.44:86
chr10	100155296	rs11189591	T	G	927.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:45,43:0.49:88
chr10	100157329	rs61159293	AC	A	1740.73	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:84,75:0.47:159
chr10	100157368	rs10786418	C	T	944.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:47,42:0.47:89
chr10	100183774	rs10883093	A	G	597.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:20,25:0.56:45
chr10	100190264	rs2296431	T	C	5781.77	.	AC=1;AF=0.500;AN=2;DB;DP=489;set=Intersection	GT:AD:AF:DP	0/1:214,271:0.56:485
chr10	100193679	rs1886728	G	C	7822.77	.	AC=1;AF=0.500;AN=2;DB;DP=850;set=Intersection	GT:AD:AF:DP	0/1:462,381:0.45:843
chr10	100195583	rs2296430	T	A	1538.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:72,72:0.50:144
chr10	100219262	rs35712968	G	T	762.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:60,38:0.39:98
chr10	100219314	rs10883099	G	A	6135.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:2,232:0.99:234
chr10	100219374	rs10883100	T	A	8813.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:1,338:1.00:339
chr10	100219519	rs11189618	G	A	3924.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:1,138:0.99:139
chr10	100250019	.	GACACACACACAC	G,GAC	3696.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=118;set=Intersection	GT:AF:DP	1/2:0.18,0.80:92
chr10	100481315	rs147098746	A	AAAAT	479.73	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:15,13:0.46:28
chr10	100991971	.	TACAC	T	1797.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.511;ClippingRankSum=0.000;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.000;QD=19.97;ReadPosRankSum=0.762;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:31,59:0.66:90
chr10	100991976	.	A	G	678.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.531;ClippingRankSum=0.000;DP=117;ExcessHet=3.0103;FS=2.882;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=-0.651;QD=6.01;ReadPosRankSum=1.037;SOR=0.441;set=HC	GT:AD:AF:DP	0/1:78,35:0.31:113
chr10	100991979	.	C	T	672.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.759;ClippingRankSum=0.000;DP=122;ExcessHet=3.0103;FS=0.809;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=-0.631;QD=5.70;ReadPosRankSum=1.692;SOR=0.553;set=HC	GT:AD:AF:DP	0/1:83,35:0.30:118
chr10	101090428	rs2862600	T	G	10571.77	.	AC=2;AF=1.00;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	1/1:0,364:1.00:364
chr10	101117557	rs3750895	G	A	95.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:21,7:0.25:28
chr10	101120787	rs3763792	C	T	1396.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:85,68:0.44:153
chr10	101124157	.	C	CT	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.320;ClippingRankSum=0.000;DP=185;ExcessHet=3.0103;FS=1.652;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.000;QD=0.23;ReadPosRankSum=-0.242;SOR=0.519;set=HC	GT:AD:AF:DP	0/1:148,31:0.17:179
chr10	101137063	rs3829211	G	A	4154.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr10	101147692	rs2298316	G	A	8973.77	.	AC=1;AF=0.500;AN=2;DB;DP=839;set=Intersection	GT:AD:AF:DP	0/1:402,432:0.52:834
chr10	101150256	rs3793931	A	G	338.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:18,15:0.45:33
chr10	101165872	rs147400601	CT	C	1734.73	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:124,92:0.43:216
chr10	101293035	rs41290504	C	A	5665.77	.	AC=1;AF=0.500;AN=2;DB;DP=515;set=Intersection	GT:AD:AF:DP	0/1:252,254:0.50:506
chr10	101295274	.	GGGC	G	140.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.391;ClippingRankSum=0.000;DP=91;ExcessHet=3.0103;FS=3.081;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.60;ReadPosRankSum=0.833;SOR=0.280;set=HC	GT:AD:AF:DP	0/1:78,10:0.11:88
chr10	101372411	rs880568	T	C	5316.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr10	101373729	rs17494319	C	T	1117.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:47,51:0.52:98
chr10	101420283	rs71933840	GCACACACA	G,GCACA	1249.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.25;QD=39.05;SOR=0.818;set=HC	GT:AD:AF:DP	1/2:0,18,14:0.56,0.44:32
chr10	101420318	rs28529459	C	G	794.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.387;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=2.649;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=1.024;QD=18.48;ReadPosRankSum=1.447;SOR=0.346;set=HC	GT:AD:AF:DP	0/1:21,22:0.51:43
chr10	101420324	rs11190227	T	G	769.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.183;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=4.536;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=1.001;QD=20.26;ReadPosRankSum=1.127;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:18,20:0.53:38
chr10	101439252	rs3740079	G	A	4388.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr10	101462193	rs10748790	C	T	2071.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr10	101473218	rs2231687	A	G	6513.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr10	101480604	rs3832650	C	CAG	3106.73	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr10	101483865	.	A	T	1249.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.482;ClippingRankSum=0.000;DP=176;ExcessHet=3.0103;FS=1.223;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.18;ReadPosRankSum=0.247;SOR=0.799;set=HC	GT:AD:AF:DP	0/1:108,66:0.38:174
chr10	101489216	rs58771687	CAAAA	C,CA	1575.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.19;QD=30.90;SOR=2.362;set=HC	GT:AD:AF:DP	1/2:0,31,20:0.61,0.39:51
chr10	101492241	rs2231675	G	A	806.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:30,33:0.52:63
chr10	101502968	rs3740076	A	G	5768.77	.	AC=1;AF=0.500;AN=2;DB;DP=554;set=Intersection	GT:AD:AF:DP	0/1:268,282:0.51:550
chr10	101510104	.	G	GT	266.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.926;ClippingRankSum=0.000;DP=225;ExcessHet=3.0103;FS=5.327;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.25;ReadPosRankSum=-0.046;SOR=0.370;set=HC	GT:AD:AF:DP	0/1:169,44:0.21:213
chr10	101544447	rs927344	A	T	12397.77	.	AC=2;AF=1.00;AN=2;DB;DP=467;set=Intersection	GT:AD:AF:DP	1/1:0,457:1.00:457
chr10	101551902	rs2756108	C	T	1998.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr10	101553259	rs2804400	C	T	1141.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:19,44:0.70:63
chr10	101563815	rs2273697	G	A	2493.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:147,129:0.47:276
chr10	101571528	rs3740074	C	T	2147.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr10	101576960	rs3740073	T	C	1844.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr10	101590619	rs41318031	C	T	1126.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:80,58:0.42:138
chr10	101591944	rs4148396	T	C	3428.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr10	101595996	rs17222723	T	A	3532.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:157,168:0.52:325
chr10	101603522	rs17216177	T	C	3734.77	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:148,171:0.54:319
chr10	101604006	rs34456559	A	G	484.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:22,23:0.51:45
chr10	101605550	rs17216282	G	C	731.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:51,34:0.40:85
chr10	101606861	rs1137968	G	T	1532.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:111,77:0.41:188
chr10	101610533	rs8187707	C	T	5315.77	.	AC=1;AF=0.500;AN=2;DB;DP=498;set=Intersection	GT:AD:AF:DP	0/1:229,256:0.53:485
chr10	101610565	rs17216212	G	A	3805.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:147,173:0.54:320
chr10	101611294	rs8187710	G	A	4406.77	.	AC=1;AF=0.500;AN=2;DB;DP=469;set=Intersection	GT:AD:AF:DP	0/1:245,219:0.47:464
chr10	101639796	rs2255901	G	A	6045.77	.	AC=1;AF=0.500;AN=2;DB;DP=520;set=Intersection	GT:AD:AF:DP	0/1:232,281:0.55:513
chr10	101645498	rs2490763	T	C	670.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:42,34:0.45:76
chr10	101654696	rs3758394	T	C	3346.77	.	AC=1;AF=0.500;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	0/1:181,171:0.49:352
chr10	101689378	rs7077718	G	C	1614.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:68,67:0.50:135
chr10	101690357	.	T	C	3997.77	.	AC=1;AF=0.500;AN=2;DP=395;set=Intersection	GT:AD:AF:DP	0/1:208,180:0.46:388
chr10	101823543	rs4462272	T	C	763.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:57,35:0.38:92
chr10	101825160	rs3829161	C	G	2290.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:108,101:0.48:209
chr10	101841153	rs10883439	A	G	1748.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr10	101912064	rs2862954	T	C	2111.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:134,108:0.45:242
chr10	101912194	rs1408579	C	T	736.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:13,27:0.68:40
chr10	101915919	.	C	T	5673.77	.	AC=1;AF=0.500;AN=2;DP=601;set=Intersection	GT:AD:AF:DP	0/1:312,277:0.47:589
chr10	101953275	rs76731979	C	G	915.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:30,38:0.56:68
chr10	101953705	rs11597086	A	C	1270.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:65,54:0.45:119
chr10	101967212	rs7909855	C	G	533.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:32,24:0.43:56
chr10	101977883	rs2230804	C	T	3289.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:149,155:0.51:304
chr10	101980459	rs986266	A	G	3460.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr10	101992923	.	TA	T	66.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.229;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=2.468;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=2.516;QD=0.97;ReadPosRankSum=0.913;SOR=1.169;set=HC	GT:AD:AF:DP	0/1:52,17:0.25:69
chr10	102006429	rs4919438	T	C	697.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:26,31:0.54:57
chr10	102016268	rs2270961	G	A	2718.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:95,123:0.56:218
chr10	102027407	rs12784396	C	T	3625.77	.	AC=1;AF=0.500;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	0/1:181,180:0.50:361
chr10	102027536	rs41290534	A	T	1008.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:53,48:0.48:101
chr10	102048760	.	G	A	1878.77	.	AC=1;AF=0.500;AN=2;DP=183;set=Intersection	GT:AD:AF:DP	0/1:92,89:0.49:181
chr10	102054452	rs11597005	A	G	15709.77	.	AC=2;AF=1.00;AN=2;DB;DP=583;set=Intersection	GT:AD:AF:DP	1/1:2,577:1.00:579
chr10	102055791	rs200777805	CA	C	101.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.065;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=4.166;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=2.903;QD=1.01;ReadPosRankSum=-1.421;SOR=1.296;set=HC	GT:AD:AF:DP	0/1:74,27:0.27:101
chr10	102056970	rs2278841	A	G	3029.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.182;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=3.479;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.93;ReadPosRankSum=-3.027;SOR=0.478;set=HC	GT:AD:AF:DP	0/1:96,83:0.46:179
chr10	102056970	.	AGG	GGT	2736	.	AC=1;AF=0.500;AN=2;BRF=0.29;FR=0.5000;HP=5;HapScore=1;MGOF=8;MMLQ=28;MQ=60.0;NF=29;NR=41;PP=2736;QD=20;SC=ACCAGCCTATAGGGGGAGGGG;SbPval=0.53;Source=Platypus;TC=159;TCF=65;TCR=94;TR=70;WE=102056980;WS=102056960;set=Platypus	GT:AD:AF:DP	0/1:89,70:0.44:159
chr10	102056972	rs2278840	G	T	3029.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.257;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=2.707;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.31;ReadPosRankSum=-1.750;SOR=0.496;set=HC	GT:AD:AF:DP	0/1:97,78:0.45:175
chr10	102057005	rs2278839	G	A	1394.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:73,60:0.45:133
chr10	102088906	rs3829159	C	T	7570.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr10	102107251	rs1054411	C	G	8350.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;MQ=60.03;set=Intersection	GT:AD:AF:DP	1/1:1,321:1.00:322
chr10	102116208	rs111712956	ATCCCC	A	14899.73	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:0,336:1.00:336
chr10	102116311	rs2234970	A	C	13300.77	.	AC=2;AF=1.00;AN=2;DB;DP=495;set=Intersection	GT:AD:AF:DP	1/1:1,488:1.00:489
chr10	102257348	rs77000964	C	T	571.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:38,26:0.41:64
chr10	102259706	rs2273696	T	G	800.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:27,32:0.54:59
chr10	102265056	rs140191147	AAC	A	349.73	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:87,27:0.24:114
chr10	102295645	.	G	GT	2853.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.542;ClippingRankSum=0.000;DP=482;ExcessHet=3.0103;FS=0.875;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.75;ReadPosRankSum=-1.004;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:203,220:0.52:423
chr10	102295836	rs2295778	C	G	4891.77	.	AC=1;AF=0.500;AN=2;DB;DP=515;set=Intersection	GT:AD:AF:DP	0/1:275,233:0.46:508
chr10	102506070	rs4472867	G	C	21237.77	.	AC=2;AF=1.00;AN=2;DB;DP=818;set=Intersection	GT:AD:AF:DP	1/1:0,811:1.00:811
chr10	102506103	rs4405241	C	A	5608.77	.	AC=1;AF=0.500;AN=2;DB;DP=528;set=Intersection	GT:AD:AF:DP	0/1:271,254:0.48:525
chr10	102539429	rs7901210	C	G	1174.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:64,50:0.44:114
chr10	102568983	rs1800898	A	C	5193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.489;ClippingRankSum=0.000;DB;DP=533;ExcessHet=3.0103;FS=0.524;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.76;ReadPosRankSum=-1.655;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:265,267:0.50:532
chr10	102584597	rs11190717	G	A	6407.77	.	AC=1;AF=0.500;AN=2;DB;DP=613;set=Intersection	GT:AD:AF:DP	0/1:315,295:0.48:610
chr10	102673063	rs3802725	G	T	5846.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr10	102684380	rs10883563	C	A	14805.77	.	AC=2;AF=1.00;AN=2;DB;DP=554;set=Intersection	GT:AD:AF:DP	1/1:0,542:1.00:542
chr10	102689217	rs2273654	T	C	9823.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	1/1:0,346:1.00:346
chr10	102689504	rs10786614	G	A	631.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr10	102707526	rs12780429	A	G	445.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:16,21:0.57:37
chr10	102739143	rs35784439	A	AT	44.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.355;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=0.000;QD=0.62;ReadPosRankSum=0.113;SOR=0.581;set=HC	GT:AD:AF:DP	0/1:57,15:0.21:72
chr10	102744331	rs11591349	A	T	8739.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:0,326:1.00:326
chr10	102746231	rs7184	C	T	2791.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr10	102746829	rs181211282	G	A	8694.77	.	AC=1;AF=0.500;AN=2;DB;DP=827;set=Intersection	GT:AD:AF:DP	0/1:423,395:0.48:818
chr10	102762256	rs752974	C	T	4059.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr10	102770082	rs807023	T	G	4314.77	.	AC=1;AF=0.500;AN=2;DB;DP=439;set=Intersection	GT:AD:AF:DP	0/1:221,212:0.49:433
chr10	102770293	rs200896335	T	TGCTGCG	2482.73	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:87,69:0.44:156
chr10	102770327	rs807022	A	G	1372.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:80,66:0.45:146
chr10	102775221	.	ATGTG	ATG,A	71.73	.	AC=1,0;AF=0.500,0.00;AN=2;DP=28;set=Intersection	GT:AF:DP	0/1:0.23:26
chr10	102775349	rs34125357	CT	C	6165.73	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr10	102777461	rs10786615	T	C	424.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:16,21:0.57:37
chr10	102777768	rs11190793	C	G	2003.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:81,88:0.52:169
chr10	102780265	rs7075659	G	A	845.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:33,38:0.54:71
chr10	102780312	rs7075685	G	T	1654.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:76,83:0.52:159
chr10	102780354	rs77484072	TG	T	2334.73	.	AC=1;AF=0.500;AN=2;DB;DP=271;MQ=60.12;set=Intersection	GT:AD:AF:DP	0/1:140,123:0.47:263
chr10	102783678	rs6584410	T	C	5558.77	.	AC=1;AF=0.500;AN=2;DB;DP=514;set=Intersection	GT:AD:AF:DP	0/1:240,269:0.53:509
chr10	102792295	rs807014	G	A	4207.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr10	102795731	rs76529895	G	A	1926.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:133,94:0.41:227
chr10	102796774	rs2275383	C	T	2105.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr10	102797259	rs2275382	C	T	911.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:57,46:0.45:103
chr10	102824349	rs807037	G	C	2339.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:102,103:0.50:205
chr10	102827228	rs2295715	G	A	2179.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:60,88:0.59:148
chr10	102827757	rs60001046	G	GT	3901.73	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:184,158:0.46:342
chr10	102895312	rs1416361	G	A	1398.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:59,63:0.52:122
chr10	102988345	rs941909	G	A	6828.77	.	AC=1;AF=0.500;AN=2;DB;DP=610;set=Intersection	GT:AD:AF:DP	0/1:286,308:0.52:594
chr10	102997581	rs678741	G	A	1056.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:43,49:0.53:92
chr10	102997603	rs60208745	T	C	2204.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.634;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=1.417;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.70;ReadPosRankSum=0.560;SOR=0.857;set=HC	GT:AD:AF:DP	0/1:73,59:0.45:132
chr10	102997627	rs45561036	G	A	2572.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:94,77:0.45:171
chr10	103174472	rs202078725	C	CTG	2171.73	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:67,62:0.48:129
chr10	103221870	rs5787432	CAGG	C	6567.73	.	AC=2;AF=1.00;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.07;QD=44.68;SOR=0.821;set=HC	GT:AD:AF:DP	1/1:0,147:1.00:147
chr10	103281722	rs9420854	C	G	824.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr10	103291249	rs9420859	T	C	2449.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr10	103340056	rs3730477	G	A	9194.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:2,344:0.99:346
chr10	103340144	rs3730476	A	G	7888.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr10	103340179	rs3730475	A	G	5595.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr10	103340235	rs3730474	T	C	2746.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr10	103343533	rs3730465	A	G	2257.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr10	103345940	rs3730462	CTGTTG	C	2082.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr10	103354554	rs7911520	A	G	5356.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr10	103361088	rs7874	C	T	5686.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.62;SOR=0.888;set=HC	GT:AD:AF:DP	1/1:0,222:1.00:222
chr10	103368654	rs7006	T	C	15710.77	.	AC=2;AF=1.00;AN=2;DB;DP=590;set=Intersection	GT:AD:AF:DP	1/1:0,587:1.00:587
chr10	103454402	rs61382490	A	T	2171.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:214,115:0.35:329
chr10	103550604	rs1124714	T	C	1569.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.400;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=0.697;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.29;ReadPosRankSum=-0.070;SOR=0.785;set=HC	GT:AD:AF:DP	0/1:69,70:0.50:139
chr10	103559245	rs76134290	G	T	1920.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:74,90:0.55:164
chr10	103560186	rs2305194	A	C	1112.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:50,44:0.47:94
chr10	103565960	rs3740422	G	C	3415.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:136,150:0.52:286
chr10	103567665	rs372242564	GA	G	479.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.215;ClippingRankSum=0.000;DB;DP=374;ExcessHet=3.0103;FS=1.987;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=0.000;QD=1.67;ReadPosRankSum=-0.554;SOR=0.541;set=HC	GT:AD:AF:DP	0/1:203,85:0.30:288
chr10	103587552	rs2305189	G	A	4086.77	.	AC=1;AF=0.500;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	0/1:200,196:0.49:396
chr10	103588734	rs1562364	A	G	9254.77	.	AC=2;AF=1.00;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	1/1:0,355:1.00:355
chr10	103599325	rs874885	A	T	2453.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr10	103603162	rs12413444	G	T	1601.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:107,82:0.43:189
chr10	103609704	rs7918620	G	T	1999.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:83,94:0.53:177
chr10	103717493	rs376923161	T	TA	847.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.215;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=5.369;MLEAC=1;MLEAF=0.500;MQ=60.39;MQRankSum=0.784;QD=8.07;ReadPosRankSum=0.031;SOR=0.260;set=HC	GT:AD:AF:DP	0/1:38,67:0.64:105
chr10	103793181	.	C	CT	232.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.629;ClippingRankSum=0.000;DP=191;ExcessHet=3.0103;FS=2.765;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.64;ReadPosRankSum=-0.328;SOR=1.009;set=HC	GT:AD:AF:DP	0/1:109,33:0.23:142
chr10	103799758	rs11191190	C	T	3293.77	.	AC=1;AF=0.500;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	0/1:190,159:0.46:349
chr10	103904763	rs11357964	TC	T	2078.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.021;ClippingRankSum=0.000;DB;DP=253;ExcessHet=3.0103;FS=3.578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.48;ReadPosRankSum=0.439;SOR=0.939;set=HC	GT:AD:AF:DP	0/1:134,111:0.45:245
chr10	103908080	rs3740405	G	A	541.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:29,25:0.46:54
chr10	103990980	rs145131919	G	C	725.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:28,28:0.50:56
chr10	103991381	rs2281983	G	A	6279.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr10	104120731	.	C	CA	425.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.050;ClippingRankSum=0.000;DP=142;ExcessHet=3.0103;FS=2.718;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=1.681;QD=3.70;ReadPosRankSum=-0.815;SOR=1.011;set=HC	GT:AD:AF:DP	0/1:70,45:0.39:115
chr10	104127171	rs2273555	G	A	8916.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:0,327:1.00:327
chr10	104128954	rs7902882	T	A	7536.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr10	104136469	rs2180707	T	C	12005.77	.	AC=2;AF=1.00;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	1/1:0,454:1.00:454
chr10	104140350	rs11191274	G	A	8859.77	.	AC=1;AF=0.500;AN=2;DB;DP=814;set=Intersection	GT:AD:AF:DP	0/1:412,393:0.49:805
chr10	104155750	rs199513883	G	A	5122.77	.	AC=1;AF=0.500;AN=2;DB;DP=479;set=Intersection	GT:AD:AF:DP	0/1:218,251:0.54:469
chr10	104157711	rs7897947	T	G	568.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:67,35:0.34:102
chr10	104157727	rs4919632	C	T	3579.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr10	104158972	rs11331332	CA	C	539.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.377;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=5.002;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=1.240;QD=5.51;ReadPosRankSum=-0.639;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:40,58:0.59:98
chr10	104159196	rs4919633	A	G	5658.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr10	104160434	rs4919634	A	G	5979.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr10	104161967	rs7077329	T	C	23182.77	.	AC=2;AF=1.00;AN=2;DB;DP=878;set=Intersection	GT:AD:AF:DP	1/1:0,873:1.00:873
chr10	104163489	rs7068416	G	A	3499.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr10	104170524	rs201327357	AGCCCT	A	744.73	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:13,21:0.62:34
chr10	104172112	rs78145470	C	T	8270.77	.	AC=1;AF=0.500;AN=2;DB;DP=787;set=Intersection	GT:AD:AF:DP	0/1:393,380:0.49:773
chr10	104196465	rs2224374	T	C	418.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr10	104214080	rs148334455	CT	C	1829.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.084;ClippingRankSum=0.000;DB;DP=326;ExcessHet=3.0103;FS=1.120;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.602;QD=7.41;ReadPosRankSum=-0.262;SOR=0.584;set=HC	GT:AD:AF:DP	0/1:123,124:0.50:247
chr10	104215003	rs79247559	T	G	722.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:45,34:0.43:79
chr10	104229057	rs35597970	C	CA	518.73	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:19,18:0.49:37
chr10	104229785	rs41306870	C	T	5870.77	.	AC=1;AF=0.500;AN=2;DB;DP=615;set=Intersection	GT:AD:AF:DP	0/1:325,286:0.47:611
chr10	104230930	rs68007409	TTCGGTGCTGGG	T	2672.73	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:77,70:0.48:147
chr10	104231054	rs11191295	A	G	1583.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:79,73:0.48:152
chr10	104231234	rs913028	T	C	1160.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr10	104231651	rs7081110	A	G	984.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:20,25:0.56:45
chr10	104231662	rs7081467	G	C	1152.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:22,35:0.61:57
chr10	104232716	rs3740415	G	A	7467.77	.	AC=1;AF=0.500;AN=2;DB;DP=746;set=Intersection	GT:AD:AF:DP	0/1:374,357:0.49:731
chr10	104232809	rs3740414	T	G	1858.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:87,73:0.46:160
chr10	104235799	rs35640162	G	GT	578.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.621;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=12.433;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.86;ReadPosRankSum=-0.380;SOR=1.472;set=HC	GT:AD:AF:DP	0/1:14,31:0.69:45
chr10	104235807	rs34731010	TGG	T	431.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.091;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=12.433;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.59;ReadPosRankSum=0.736;SOR=1.108;set=HC	GT:AD:AF:DP	0/1:31,14:0.31:45
chr10	104235809	.	G	GTTTTTTT	431.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.749;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=13.597;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.04;ReadPosRankSum=0.623;SOR=1.080;set=HC	GT:AD:AF:DP	0/1:29,14:0.33:43
chr10	104240498	rs12162	A	G	57.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.424;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.25;ReadPosRankSum=-1.589;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:7,4:0.36:11
chr10	104240974	rs2296578	C	G	1148.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:79,55:0.41:134
chr10	104241683	rs2296580	G	T	857.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:52,43:0.45:95
chr10	104242886	rs2296581	G	A	3681.77	.	AC=1;AF=0.500;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	0/1:194,177:0.48:371
chr10	104243883	rs7079810	C	T	2472.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:100,113:0.53:213
chr10	104244139	rs2296582	G	T	4465.77	.	AC=1;AF=0.500;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	0/1:206,207:0.50:413
chr10	104245549	rs2296585	C	T	745.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:17,32:0.65:49
chr10	104245575	rs2296586	G	A	455.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:12,19:0.61:31
chr10	104245588	rs2296587	G	A	410.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:8,16:0.67:24
chr10	104248087	rs2296588	T	C	4443.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:158,128:0.45:286
chr10	104248106	rs2296589	T	A	4045.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:129,108:0.46:237
chr10	104250209	rs111446950	CT	C	2160.73	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:78,78:0.50:156
chr10	104250278	rs17709610	A	G	2181.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:108,110:0.50:218
chr10	104264107	rs2274351	C	T	5789.77	.	AC=1;AF=0.500;AN=2;DB;DP=607;set=Intersection	GT:AD:AF:DP	0/1:297,298:0.50:595
chr10	104268877	rs2281879	G	C	779.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:35,33:0.49:68
chr10	104269217	rs2281880	G	A	533.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:28,24:0.46:52
chr10	104356822	rs10786690	A	G	4276.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr10	104375258	rs2001389	G	A	1736.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:48,70:0.59:118
chr10	104378688	rs71474570	CGTGT	C,CGT	456.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.907;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=5.679;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=18.27;ReadPosRankSum=1.908;SOR=2.419;set=HC	GT:AD:AF:DP	1/2:4,9,12:0.36,0.48:25
chr10	104378750	rs10786698	G	A	1287.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:47,62:0.57:109
chr10	104387019	rs12414407	T	C	2664.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:131,122:0.48:253
chr10	104389932	rs4917980	T	G	8425.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr10	104414709	rs2286748	C	A	621.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:33,27:0.45:60
chr10	104415048	.	C	T	1403.77	.	AC=1;AF=0.500;AN=2;DP=173;set=Intersection	GT:AD:AF:DP	0/1:102,71:0.41:173
chr10	104415720	rs4274160	T	C	3673.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr10	104445545	rs3832710	AG	A	822.73	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:22,27:0.55:49
chr10	104449836	rs61869211	A	G	176.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:20,10:0.33:30
chr10	104459079	rs59504153	TAA	T	3755.73	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr10	104473813	rs2248684	C	A	3445.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr10	104474107	rs2248679	G	A	9838.77	.	AC=2;AF=1.00;AN=2;DB;DP=376;MQ=60.03;set=Intersection	GT:AD:AF:DP	1/1:0,374:1.00:374
chr10	104486304	rs2244647	G	C	3641.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr10	104486974	rs2244524	C	T	2707.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr10	104487072	rs2244518	G	T	361.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr10	104489011	rs2244254	G	C	6162.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr10	104492707	rs2778037	G	C	9027.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	1/1:0,334:1.00:334
chr10	104536365	rs2254563	C	G	507.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:21,21:0.50:42
chr10	104572276	rs284861	A	G	4594.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr10	104572963	rs284860	T	C	10675.77	.	AC=2;AF=1.00;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	1/1:0,373:1.00:373
chr10	104573017	rs284859	G	T	3461.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:150,158:0.51:308
chr10	104591182	rs284849	G	T	1189.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:57,51:0.47:108
chr10	104636655	rs3740393	G	C	3399.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:118,151:0.56:269
chr10	104637992	rs10786719	A	G	218.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:9,10:0.53:19
chr10	104650251	rs7085854	T	C	1916.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:53,85:0.62:138
chr10	104660256	rs10748835	G	A	288.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:13,12:0.48:25
chr10	104678350	rs76057237	G	A	1357.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:89,68:0.43:157
chr10	104814162	rs2275271	T	C	5805.77	.	AC=1;AF=0.500;AN=2;DB;DP=556;set=Intersection	GT:AD:AF:DP	0/1:263,287:0.52:550
chr10	104836047	rs943036	T	C	954.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:50,45:0.47:95
chr10	104849468	rs3740387	G	A	1314.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:75,65:0.46:140
chr10	104850621	rs143410585	TAATA	T	6625.73	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:137,167:0.55:304
chr10	104850632	rs3736922	G	A	6706.77	.	AC=1;AF=0.500;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	0/1:155,181:0.54:336
chr10	104851285	rs10883830	G	A	288.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:23,15:0.39:38
chr10	104851396	rs11191553	G	T	983.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:50,47:0.48:97
chr10	104854004	rs144721775	T	TA	968.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.005;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=1.657;QD=5.98;ReadPosRankSum=-0.749;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:89,73:0.45:162
chr10	104855656	rs1926030	T	C	3228.77	.	AC=1;AF=0.500;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	0/1:196,160:0.45:356
chr10	104855670	rs1926029	G	A	3309.77	.	AC=1;AF=0.500;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	0/1:190,170:0.47:360
chr10	104860395	rs2863727	T	G	3040.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr10	105039579	rs1163086	A	G	710.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:25,30:0.55:55
chr10	105046689	rs3740381	G	C	193.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:13,10:0.43:23
chr10	105048217	rs34440112	A	C	4282.77	.	AC=1;AF=0.500;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	0/1:168,198:0.54:366
chr10	105063897	rs34732054	C	CT	62.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.016;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=3.056;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.14;ReadPosRankSum=2.210;SOR=1.949;set=HC	GT:AD:AF:DP	0/1:12,8:0.40:20
chr10	105108455	rs4917387	T	C	301.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:16,13:0.45:29
chr10	105108810	.	CT	C	49.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.434;ClippingRankSum=0.000;DP=220;ExcessHet=3.0103;FS=1.920;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.31;ReadPosRankSum=-0.098;SOR=0.921;set=HC	GT:AD:AF:DP	0/1:129,33:0.20:162
chr10	105110740	rs113359610	A	AGGAGGC	6126.73	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:4,213:0.98:217
chr10	105127708	rs10883858	G	A	317.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:15,14:0.48:29
chr10	105139888	.	C	CT	66.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.775;ClippingRankSum=0.000;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.09;ReadPosRankSum=-0.961;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:47,14:0.23:61
chr10	105144986	rs7069667	A	G	1472.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr10	105154089	rs7911488	A	G	5491.77	.	AC=1;AF=0.500;AN=2;DB;DP=514;set=Intersection	GT:AD:AF:DP	0/1:247,259:0.51:506
chr10	105165615	rs7919031	G	A	3133.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr10	105194086	rs2986014	C	T	3260.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:193,152:0.44:345
chr10	105201577	rs2281860	C	T	2136.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:102,91:0.47:193
chr10	105203193	rs79478408	C	A	768.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:28,33:0.54:61
chr10	105203785	rs41302735	C	T	678.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:21,27:0.56:48
chr10	105204454	rs942900	T	C	1203.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:49,59:0.55:108
chr10	105206874	rs6580	T	C	1549.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:104,73:0.41:177
chr10	105207301	rs2232662	C	T	1114.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:120,63:0.34:183
chr10	105215016	rs2986016	A	G	2025.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:133,103:0.44:236
chr10	105215091	rs41287500	C	T	4495.77	.	AC=1;AF=0.500;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	0/1:195,213:0.52:408
chr10	105215216	rs41287502	C	A	5548.77	.	AC=1;AF=0.500;AN=2;DB;DP=508;set=Intersection	GT:AD:AF:DP	0/1:238,261:0.52:499
chr10	105218359	rs2986018	T	C	6869.77	.	AC=1;AF=0.500;AN=2;DB;DP=676;set=Intersection	GT:AD:AF:DP	0/1:335,332:0.50:667
chr10	105233110	rs2986035	C	T	5533.77	.	AC=1;AF=0.500;AN=2;DB;DP=469;set=Intersection	GT:AD:AF:DP	0/1:209,251:0.55:460
chr10	105235925	rs3014199	T	C	1051.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:16,40:0.71:56
chr10	105254090	rs2986041	G	T	3047.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:117,136:0.54:253
chr10	105330947	rs12253987	T	A	1264.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:59,56:0.49:115
chr10	105361816	rs4918031	T	G	3976.77	.	AC=1;AF=0.500;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	0/1:219,186:0.46:405
chr10	105362104	rs11191741	G	A	5668.77	.	AC=1;AF=0.500;AN=2;DB;DP=539;set=Intersection	GT:AD:AF:DP	0/1:277,259:0.48:536
chr10	105362209	rs4917396	T	C	9417.77	.	AC=1;AF=0.500;AN=2;DB;DP=799;set=Intersection	GT:AD:AF:DP	0/1:372,419:0.53:791
chr10	105365386	rs7088714	A	G	709.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:34,34:0.50:68
chr10	105428453	rs10533306	CAG	C	8263.73	.	AC=1;AF=0.500;AN=2;DB;DP=883;MQ=60.04;set=Intersection	GT:AD:AF:DP	0/1:392,387:0.50:779
chr10	105561300	rs148335179	T	TACACAC,TACACACACACAC	423.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=38.52;SOR=3.258;set=HC	GT:AD:AF:DP	1/2:0,5,6:0.45,0.55:11
chr10	105614884	rs4918064	A	G	6045.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr10	105615074	rs10883928	C	T	25085.77	.	AC=2;AF=1.00;AN=2;DB;DP=939;set=Intersection	GT:AD:AF:DP	1/1:0,931:1.00:931
chr10	105615105	rs10883929	G	C	16803.77	.	AC=2;AF=1.00;AN=2;DB;DP=641;set=Intersection	GT:AD:AF:DP	1/1:0,637:1.00:637
chr10	105657316	rs10786775	G	C	3186.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr10	105659826	rs2487999	T	C	3917.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr10	105727656	rs67597452	AAG	A	5108.73	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr10	105750293	rs183048932	T	C	249.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:9,10:0.53:19
chr10	105761318	rs369850873	A	G	3891.77	.	AC=1;AF=0.500;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	0/1:185,189:0.51:374
chr10	105768158	rs805664	A	T	2061.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.077;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=1.933;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=20.02;ReadPosRankSum=0.289;SOR=1.424;set=HC	GT:AD:AF:DP	1/1:6,97:0.94:103
chr10	105781532	rs10883961	C	T	9480.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	1/1:0,356:1.00:356
chr10	105792205	rs813943	A	C	4607.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr10	105793173	rs1747675	T	G	1554.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr10	105796399	rs2274098	G	C	3884.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr10	105796449	rs2476957	A	G	2159.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr10	105796738	rs805714	A	C	710.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr10	105796819	rs2476958	A	G	2355.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr10	105797045	rs34553613	A	ATT	1254.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.738;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=5.283;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=0.000;QD=23.67;ReadPosRankSum=0.129;SOR=1.872;set=HC	GT:AD:AF:DP	1/1:1,52:0.98:53
chr10	105797378	rs2282437	G	A	2934.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr10	105797693	rs61382109	TA	T	1644.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr10	105797989	.	TACACACACACACACACACACAC	T,TAC	3951.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=117;set=Intersection	GT:AF:DP	1/2:0.20,0.80:107
chr10	105798872	rs2274100	T	C	6606.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr10	105799216	rs2296219	G	T	2826.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr10	105799550	rs376820281	ACACG	A	432.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:62,25:0.29:87
chr10	105799552	rs67083195	ACG	A	1285.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:36,51:0.59:87
chr10	105799599	rs11191905	C	A	5650.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr10	105800321	rs12763538	C	T	1940.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.34;QD=26.23;SOR=1.209;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr10	105800348	rs139480552	ATGGATGGATAGG	A	119.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.068;ClippingRankSum=-0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=63.88;MQRankSum=0.549;QD=11.97;ReadPosRankSum=-0.492;SOR=1.911;set=HC	GT:AD:AF:DP	0/1:5,5:0.50:10
chr10	105800352	.	ATGGATAGG	A	94.73	.	AC=1;AF=0.500;ALERT;AN=2;DP=46;set=Intersection	GT:AD:AF:DP	0/1:5,4:0.44:9
chr10	105801253	rs4918079	G	A	7153.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr10	105803080	rs2147269	A	G	1501.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr10	105805310	rs805719	G	A	1093.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.56;SOR=3.086;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr10	105805436	rs805720	G	A	4686.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr10	105805497	rs813944	C	T	8120.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.37;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,308:1.00:308
chr10	105806310	rs805721	C	A	2801.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr10	105810400	rs805722	T	C	2669.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr10	105811218	rs12260615	T	A	16664.77	.	AC=2;AF=1.00;AN=2;DB;DP=645;set=Intersection	GT:AD:AF:DP	1/1:0,638:1.00:638
chr10	105815201	rs201385541	G	GTC	363.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.213;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=2.928;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.43;ReadPosRankSum=1.029;SOR=0.321;set=HC	GT:AD:AF:DP	0/1:45,22:0.33:67
chr10	105815204	rs1747676	A	T	1512.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.569;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=4.610;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.25;ReadPosRankSum=-1.486;SOR=1.577;set=HC	GT:AD:AF:DP	0/1:27,41:0.60:68
chr10	105815239	.	CAA	C	600.73	.	AC=1;AF=0.500;ALERT;AN=2;DP=79;set=Intersection	GT:AD:AF:DP	0/1:40,28:0.41:68
chr10	105815241	rs1747677	A	C	1155.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.350;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=4.396;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.00;ReadPosRankSum=1.918;SOR=0.272;set=HC	GT:AD:AF:DP	0/1:35,33:0.49:68
chr10	105816685	rs805696	T	C	662.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr10	105816916	rs805698	C	T	9020.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:0,338:1.00:338
chr10	105817043	rs805699	C	T	1837.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr10	105821136	rs805704	A	T	4165.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr10	105821294	rs805705	A	G	2168.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr10	105821836	rs805706	C	T	2067.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr10	105837000	rs2274106	A	G	2260.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr10	105882055	rs7901021	A	C	1122.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr10	105882765	rs10786783	A	G	2633.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr10	105883395	rs1338777	A	C	1870.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr10	105885525	rs201504294	CT	C	634.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.484;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=1.351;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=0.599;QD=10.41;ReadPosRankSum=0.287;SOR=0.402;set=HC	GT:AD:AF:DP	0/1:13,48:0.79:61
chr10	105901936	rs637022	G	A	2848.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr10	105905380	rs141870801	TGAC	T	5223.73	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr10	105920990	rs36092125	G	GT	5272.73	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:4,223:0.98:227
chr10	105921085	rs605712	A	G	1618.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr10	105922056	rs35188172	GT	G	18839.73	.	AC=2;AF=1.00;AN=2;DB;DP=550;MQ=60.16;set=Intersection	GT:AD:AF:DP	1/1:2,535:1.00:537
chr10	105932157	rs35761606	CT	C	1636.73	.	AC=1;AF=0.500;AN=2;DB;DP=154;MQ=60.07;set=Intersection	GT:AD:AF:DP	0/1:72,81:0.53:153
chr10	105938913	rs200538630	CAGAG	C,CAG	2969.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.561;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=1.314;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.15;MQRankSum=0.000;QD=25.82;ReadPosRankSum=1.557;SOR=1.125;set=HC	GT:AD:AF:DP	1/2:10,19,86:0.17,0.75:115
chr10	105939451	rs624159	C	A	3530.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr10	105942304	rs569856	T	C	5378.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr10	105942337	rs569967	G	C	3414.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr10	105945985	rs479879	A	C	1720.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr10	105956776	rs584309	A	G	2894.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr10	105957561	rs678292	G	A	793.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr10	105957613	rs677904	G	A	2228.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr10	105967413	rs17824653	A	C	4861.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:2,171:0.99:173
chr10	105990647	.	C	CT	146.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.359;ClippingRankSum=0.000;DP=68;ExcessHet=3.0103;FS=6.459;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=1.495;QD=2.88;ReadPosRankSum=0.462;SOR=2.257;set=HC	GT:AD:AF:DP	0/1:34,17:0.33:51
chr10	105991884	rs789577	T	G	5698.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr10	106027186	rs17885600	A	T	789.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:25,36:0.59:61
chr10	106037894	rs157077	T	C	700.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:23,26:0.53:49
chr10	106116433	rs111813538	A	AT	136.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.339;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.41;ReadPosRankSum=-0.222;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:19,12:0.39:31
chr10	106207269	rs1411711	G	C	277.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:12,11:0.48:23
chr10	106582029	rs1490182	C	T	891.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr10	106602362	rs10884052	G	C	723.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:13,28:0.68:41
chr10	106602496	rs5787553	C	CT	2672.73	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:123,134:0.52:257
chr10	106602537	rs41317264	C	T	3048.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:166,146:0.47:312
chr10	106675485	rs17117920	G	A	1709.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:82,77:0.48:159
chr10	106907440	rs791125	C	T	2347.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:93,113:0.55:206
chr10	106907586	rs791126	C	G	1356.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:68,64:0.48:132
chr10	106916819	rs2297500	G	A	941.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:48,40:0.45:88
chr10	106924208	rs12249990	A	G	881.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:48,41:0.46:89
chr10	106970768	rs41291852	G	A	253.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:14,12:0.46:26
chr10	106970848	rs3214966	AG	A	2075.73	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:71,64:0.47:135
chr10	106974123	rs113804925	A	AACACAC	2784.73	.	AC=1;AF=0.500;AN=2;DB;DP=621;MQ=60.05;set=Intersection	GT:AD:AF:DP	0/1:366,182:0.33:548
chr10	106982814	rs3750260	G	A	2166.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:82,100:0.55:182
chr10	107023264	rs41291856	C	G	795.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:31,34:0.52:65
chr10	108371571	rs137930414	A	AGTTT	5362.73	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:4,122:0.97:126
chr10	108380006	.	CAG	C	160.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.750;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.26;ReadPosRankSum=0.426;SOR=0.599;set=HC	GT:AD:AF:DP	0/1:59,12:0.17:71
chr10	108388923	rs1885351	T	C	1983.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:99,91:0.48:190
chr10	108389249	rs1322004	T	C	1168.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr10	108427682	rs66783381	CA	C	425.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.815;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=2.783;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.30;ReadPosRankSum=1.597;SOR=1.893;set=HC	GT:AD:AF:DP	0/1:4,28:0.88:32
chr10	108432828	rs11193010	C	T	813.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:24,36:0.60:60
chr10	108439103	rs821929	A	C	5645.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr10	108447836	rs821935	C	T	4076.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr10	108466412	rs2756231	C	T	7966.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chr10	108469161	rs2756232	C	G	6153.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr10	108923704	rs2993097	A	G	9080.77	.	AC=1;AF=0.500;AN=2;DB;DP=1029;set=Intersection	GT:AD:AF:DP	0/1:590,432:0.42:1022
chr10	108924150	rs61732174	G	C	981.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:45,47:0.51:92
chr10	111440605	rs7898586	A	G	2937.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:162,134:0.45:296
chr10	111440719	rs7915504	T	A	4521.77	.	AC=1;AF=0.500;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	0/1:216,215:0.50:431
chr10	111625108	rs483072	T	C	1676.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr10	111630731	rs612155	G	C	2513.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:105,116:0.52:221
chr10	111631665	rs2274978	C	G	2068.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:113,93:0.45:206
chr10	111631781	rs2274979	G	A	388.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:22,16:0.42:38
chr10	111633025	rs642938	A	C	683.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:27,30:0.53:57
chr10	111637635	rs2273740	A	C	2983.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:155,142:0.48:297
chr10	111646147	rs623980	A	G	3306.77	.	AC=1;AF=0.500;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	0/1:183,161:0.47:344
chr10	111647738	rs472049	C	T	636.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:26,30:0.54:56
chr10	111652610	rs3737153	A	G	1020.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:58,51:0.47:109
chr10	111667664	rs944969	T	C	350.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:20,15:0.43:35
chr10	111667702	rs686155	T	C	581.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr10	111683280	rs145751207	CGGCG	C	3284.73	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr10	111706856	rs12569906	A	T	2826.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:91,120:0.57:211
chr10	111711658	rs12257668	C	T	418.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:16,21:0.57:37
chr10	111878510	rs12268910	T	G	6496.77	.	AC=1;AF=0.500;AN=2;DB;DP=571;set=Intersection	GT:AD:AF:DP	0/1:267,299:0.53:566
chr10	111886089	rs3731566	G	A	1160.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:28,48:0.63:76
chr10	111890362	rs13306109	C	A	929.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:40,39:0.49:79
chr10	111987960	rs61745504	C	T	6798.77	.	AC=1;AF=0.500;AN=2;DB;DP=606;set=Intersection	GT:AD:AF:DP	0/1:288,314:0.52:602
chr10	112004481	rs113816392	T	C	479.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:35,25:0.42:60
chr10	112038848	rs41291902	A	G	2189.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:82,89:0.52:171
chr10	112044553	rs5787843	G	GTTC	428.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.721;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.90;ReadPosRankSum=0.797;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:71,39:0.35:110
chr10	112044559	.	C	CTTCT	908.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.927;ClippingRankSum=0.000;DP=124;ExcessHet=3.0103;FS=2.815;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.83;ReadPosRankSum=0.329;SOR=0.449;set=HC	GT:AD:AF:DP	0/1:54,62:0.53:116
chr10	112044842	rs16448	TAAAAC	T	1339.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.966;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=5.013;MLEAC=1;MLEAF=0.500;MQ=60.50;MQRankSum=2.220;QD=18.87;ReadPosRankSum=-0.995;SOR=0.267;set=HC	GT:AD:AF:DP	0/1:34,37:0.52:71
chr10	112054908	rs7074311	C	A	1344.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr10	112058426	rs2233934	T	C	3199.77	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:159,161:0.50:320
chr10	112063216	rs2233931	C	G	837.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:51,43:0.46:94
chr10	112266771	rs1889567	C	T	5856.77	.	AC=1;AF=0.500;AN=2;DB;DP=627;set=Intersection	GT:AD:AF:DP	0/1:328,293:0.47:621
chr10	112266822	rs1889566	GC	AT	23948.77	.	AC=2;AF=1.00;AN=2;DB;DP=540;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,536:1.00:536
chr10	112327678	rs55750861	C	CA	8373.73	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr10	112328838	rs4917577	C	G	1133.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr10	112349204	rs2419572	A	G	1820.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr10	112356331	rs7075340	G	A	2220.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr10	112360315	.	G	GT	555.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.319;ClippingRankSum=0.000;DP=300;ExcessHet=3.0103;FS=0.631;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=3.013;QD=2.22;ReadPosRankSum=0.640;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:169,81:0.32:250
chr10	112361870	rs2419565	A	G	3899.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr10	112362019	rs2039874	G	T	1037.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr10	112404302	rs35141404	G	A	1812.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:74,82:0.53:156
chr10	112541676	rs61862866	T	C	6459.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.547;ClippingRankSum=0.000;DB;DP=371;ExcessHet=3.0103;FS=4.095;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.70;ReadPosRankSum=-1.935;SOR=0.521;set=HC	GT:AD:AF:DP	0/1:192,173:0.47:365
chr10	112541676	.	TAG	CAA	2944	.	AC=1;AF=0.500;AN=2;BRF=0.42;FR=0.5000;HP=1;HapScore=1;MGOF=1;MMLQ=28;MQ=59.96;NF=40;NR=73;PP=2944;QD=20;SC=GAGCCACAGCTAGAAGCCTGG;SbPval=0.46;Source=Platypus;TC=260;TCF=89;TCR=171;TR=113;WE=112541686;WS=112541666;set=Platypus	GT:AD:AF:DP	1/0:147,113:0.43:260
chr10	112541678	rs61862867	G	A	6459.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.448;ClippingRankSum=0.000;DB;DP=359;ExcessHet=3.0103;FS=2.348;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.30;ReadPosRankSum=-1.790;SOR=0.572;set=HC	GT:AD:AF:DP	0/1:189,164:0.46:353
chr10	112543217	rs6585012	G	A	3494.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr10	112544063	rs7898438	A	C	1398.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr10	112570243	rs11195338	T	C	2364.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:97,105:0.52:202
chr10	112572458	rs1417635	G	C	19179.77	.	AC=2;AF=1.00;AN=2;DB;DP=725;set=Intersection	GT:AD:AF:DP	1/1:0,717:1.00:717
chr10	112579663	rs11195343	C	T	1357.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr10	112580880	rs10787283	C	T	310.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:24,15:0.38:39
chr10	112582261	rs41292594	G	A	1408.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.505;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=2.113;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.99;ReadPosRankSum=0.096;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:68,73:0.52:141
chr10	112583189	rs202034773	CTTTTTTTTTTTTT	C	2828.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.626;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=23.524;MLEAC=1;MLEAF=0.500;MQ=60.59;MQRankSum=1.095;QD=25.95;ReadPosRankSum=0.888;SOR=2.067;set=HC	GT:AD:AF:DP	0/1:15,94:0.86:109
chr10	112590810	rs7070640	G	C	11750.77	.	AC=2;AF=1.00;AN=2;DB;DP=443;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.77;SOR=0.865;set=HC	GT:AD:AF:DP	1/1:0,439:1.00:439
chr10	112595719	rs942077	G	C	1873.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:106,89:0.46:195
chr10	112641053	rs7081726	A	G	5968.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr10	112667273	rs34559519	G	GA	611.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.273;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=10.748;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.27;ReadPosRankSum=-1.476;SOR=3.287;set=HC	GT:AD:AF:DP	0/1:24,50:0.68:74
chr10	112697017	.	CT	C	394.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.164;ClippingRankSum=0.000;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.489;QD=2.78;ReadPosRankSum=-1.648;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:94,48:0.34:142
chr10	112764594	rs1980869	T	C	2582.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr10	113913222	rs2297991	T	C	6164.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr10	113915574	rs5787948	C	CA	268.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.699;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=3.746;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.14;ReadPosRankSum=0.146;SOR=1.554;set=HC	GT:AD:AF:DP	0/1:14,19:0.58:33
chr10	113916977	rs143981414	A	G	3690.77	.	AC=1;AF=0.500;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	0/1:188,174:0.48:362
chr10	113917085	rs2254537	T	A	13104.77	.	AC=2;AF=1.00;AN=2;DB;DP=502;set=Intersection	GT:AD:AF:DP	1/1:2,493:1.00:495
chr10	113917982	rs6585140	C	G	5708.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr10	113920465	rs2277207	G	A	17230.77	.	AC=2;AF=1.00;AN=2;DB;DP=647;set=Intersection	GT:AD:AF:DP	1/1:0,641:1.00:641
chr10	113920652	rs3824626	T	C	5532.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr10	113921354	rs2250802	G	A	2957.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:1,106:0.99:107
chr10	113923595	rs10736219	C	G	17217.77	.	AC=2;AF=1.00;AN=2;DB;DP=672;set=Intersection	GT:AD:AF:DP	1/1:2,651:1.00:653
chr10	113926012	rs10749108	G	A	2115.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr10	113928487	rs2251579	A	C	2757.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr10	113935379	rs10787428	T	C	9250.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	1/1:0,349:1.00:349
chr10	113937941	rs2487294	G	T	508.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr10	113940329	rs2792751	T	C	11730.77	.	AC=2;AF=1.00;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	1/1:0,451:1.00:451
chr10	114043371	rs41313475	T	C	163.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:11,8:0.42:19
chr10	114043596	rs41314509	G	A	2807.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:123,132:0.52:255
chr10	114059064	rs41306846	A	G	934.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr10	114059330	rs11279253	TCTCTGTTTTC	T	10915.73	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr10	114061979	rs10749114	G	A	3701.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:2,135:0.99:137
chr10	114136349	rs2277208	G	C	908.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr10	114154662	.	G	GT	353.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.068;ClippingRankSum=0.000;DP=367;ExcessHet=3.0103;FS=7.157;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=2.164;QD=1.01;ReadPosRankSum=1.052;SOR=0.376;set=HC	GT:AD:AF:DP	0/1:285,65:0.19:350
chr10	114168056	.	CA	C	200.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.887;ClippingRankSum=0.000;DP=237;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.00;ReadPosRankSum=1.687;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:151,50:0.25:201
chr10	114171385	rs3831106	T	TAC	767.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.660;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=8.933;MLEAC=1;MLEAF=0.500;MQ=60.77;MQRankSum=0.953;QD=20.75;ReadPosRankSum=0.716;SOR=2.833;set=HC	GT:AD:AF:DP	0/1:10,27:0.73:37
chr10	114181683	rs2255740	A	G	9392.77	.	AC=2;AF=1.00;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	1/1:0,342:1.00:342
chr10	114185353	.	TA	T	132.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.216;ClippingRankSum=0.000;DP=58;ExcessHet=3.0103;FS=1.792;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=1.227;QD=3.24;ReadPosRankSum=-1.092;SOR=1.473;set=HC	GT:AD:AF:DP	0/1:22,19:0.46:41
chr10	114185856	rs34341101	T	TG	2070.73	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr10	114186624	rs2256368	G	A	5336.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr10	114192285	rs2306158	G	A	5185.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr10	114197982	rs3736059	A	T	944.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr10	114200355	rs2306159	G	A	9578.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:0,356:1.00:356
chr10	114202219	rs11195961	C	T	1970.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr10	114224502	rs3740143	C	G	1156.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:61,50:0.45:111
chr10	114903859	.	CTG	C	221.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.618;ClippingRankSum=0.000;DP=94;ExcessHet=3.0103;FS=6.537;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.28;ReadPosRankSum=-0.245;SOR=0.073;set=HC	GT:AD:AF:DP	0/1:29,13:0.31:42
chr10	114910667	rs113579124	G	GT	2250.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.319;ClippingRankSum=0.000;DB;DP=380;ExcessHet=3.0103;FS=0.915;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=2.074;QD=6.27;ReadPosRankSum=-0.218;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:187,172:0.48:359
chr10	115312811	rs2240879	T	C	1678.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:77,75:0.49:152
chr10	115327193	rs2286745	A	G	3077.77	.	AC=1;AF=0.500;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:167,153:0.48:320
chr10	115327399	rs2419837	A	G	775.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:22,30:0.58:52
chr10	115334124	rs3740530	C	T	3370.77	.	AC=1;AF=0.500;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	0/1:161,167:0.51:328
chr10	115335843	rs911709	A	G	3751.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr10	115336758	rs2302374	A	C	1862.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:69,76:0.52:145
chr10	115338615	rs11575684	A	G	1478.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:59,66:0.53:125
chr10	115341753	rs2245056	G	A	3283.77	.	AC=1;AF=0.500;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	0/1:204,159:0.44:363
chr10	115341846	rs2245058	G	A	2106.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:89,96:0.52:185
chr10	115348726	rs3832698	GA	G	4405.73	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:153,131:0.46:284
chr10	115348916	rs10885478	G	A	855.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:47,41:0.47:88
chr10	115349397	rs11196388	AG	A	3688.73	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr10	115350597	rs1885434	G	A	7969.77	.	AC=1;AF=0.500;AN=2;DB;DP=612;set=Intersection	GT:AD:AF:DP	0/1:246,356:0.59:602
chr10	115352005	rs11196389	A	G	1187.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:95,65:0.41:160
chr10	115352167	rs11196390	C	T	1182.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:80,64:0.44:144
chr10	115370113	rs11333099	TA	T	160.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=2.921;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.98;ReadPosRankSum=-0.154;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:52,29:0.36:81
chr10	115373851	rs2419850	T	C	2455.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr10	115385976	rs3814578	A	C	6103.77	.	AC=1;AF=0.500;AN=2;DB;DP=632;set=Intersection	GT:AD:AF:DP	0/1:330,296:0.47:626
chr10	115386088	rs3127087	C	G	1446.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:61,61:0.50:122
chr10	115388588	rs2286741	A	G	739.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:23,27:0.54:50
chr10	115388944	rs2286740	C	T	1496.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:58,66:0.53:124
chr10	115389356	rs2286736	G	A	2549.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.088;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=2.395;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.34;ReadPosRankSum=0.756;SOR=0.486;set=HC	GT:AD:AF:DP	0/1:72,67:0.48:139
chr10	115389366	rs2286735	G	A	2578.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.723;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.12;ReadPosRankSum=2.046;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:89,71:0.44:160
chr10	115392919	rs2270182	T	A	3855.77	.	AC=1;AF=0.500;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	0/1:213,189:0.47:402
chr10	115393948	rs11196400	C	T	4101.77	.	AC=1;AF=0.500;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	0/1:222,200:0.47:422
chr10	115400958	rs1539592	C	T	813.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:27,35:0.56:62
chr10	115400972	rs1539593	G	A	981.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:39,43:0.52:82
chr10	115401031	rs5788038	AT	A	3802.73	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:4,181:0.98:185
chr10	115401081	rs3127105	T	C	3528.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:136,166:0.55:302
chr10	115401264	rs3121465	A	G	2110.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:75,98:0.57:173
chr10	115405615	rs3127106	T	C	2098.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:149,110:0.42:259
chr10	115405664	rs3121478	C	T	2467.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.008;ClippingRankSum=0.000;DB;DP=321;ExcessHet=3.0103;FS=5.990;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=2.082;QD=7.81;ReadPosRankSum=0.735;SOR=1.017;set=HC	GT:AD:AF:DP	0/1:186,130:0.41:316
chr10	115405703	rs35741231	G	GAA	2324.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.330;ClippingRankSum=0.000;DB;DP=289;ExcessHet=3.0103;FS=1.095;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.951;QD=8.67;ReadPosRankSum=0.877;SOR=0.601;set=HC	GT:AD:AF:DP	0/1:143,125:0.47:268
chr10	115405791	rs3121479	A	T	989.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:56,49:0.47:105
chr10	115406485	rs3121483	C	T	294.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:15,14:0.48:29
chr10	115409840	rs2275799	C	T	3210.77	.	AC=1;AF=0.500;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	0/1:185,162:0.47:347
chr10	115411598	rs4918861	C	A	2307.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:145,118:0.45:263
chr10	115411614	rs2154028	A	G	6648.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:1,258:1.00:259
chr10	115411664	rs117582231	C	T	1398.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:119,74:0.38:193
chr10	115412686	rs3121488	G	A	3700.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr10	115412793	rs3737322	A	G	2497.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:86,120:0.58:206
chr10	115413901	rs41310308	T	C	3704.77	.	AC=1;AF=0.500;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	0/1:243,189:0.44:432
chr10	115414000	rs41310310	T	C	2180.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:89,108:0.55:197
chr10	115417289	rs1891762	G	A	14504.77	.	AC=2;AF=1.00;AN=2;DB;DP=555;set=Intersection	GT:AD:AF:DP	1/1:0,549:1.00:549
chr10	115422986	rs41302719	G	T	1859.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:98,81:0.45:179
chr10	115423747	rs1109927	G	A	7166.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr10	115439530	rs28411397	G	C	351.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:25,17:0.40:42
chr10	115439569	rs7921977	C	T	2786.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:2,110:0.98:112
chr10	115451781	rs12358524	C	T	1765.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:122,95:0.44:217
chr10	115457114	rs78849490	G	A	778.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:22,31:0.58:53
chr10	115457450	rs77120019	G	A	467.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:22,19:0.46:41
chr10	115480788	rs78946854	C	T	2869.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:157,139:0.47:296
chr10	115481018	rs3814231	C	T	1144.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:61,51:0.46:112
chr10	115489152	rs2227310	C	G	15138.77	.	AC=2;AF=1.00;AN=2;DB;DP=548;set=Intersection	GT:AD:AF:DP	1/1:2,541:1.00:543
chr10	115489167	rs2227309	G	A	16014.77	.	AC=2;AF=1.00;AN=2;DB;DP=602;set=Intersection	GT:AD:AF:DP	1/1:2,596:1.00:598
chr10	115515120	rs3981351	G	A	1315.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:90,66:0.42:156
chr10	115525175	rs4631835	T	C	12668.77	.	AC=2;AF=1.00;AN=2;DB;DP=502;set=Intersection	GT:AD:AF:DP	1/1:0,485:1.00:485
chr10	115526177	rs10885500	A	G	8168.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr10	115528428	rs10885501	G	A	1858.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr10	115609915	rs3750898	C	G	14207.77	.	AC=2;AF=1.00;AN=2;DB;DP=523;set=Intersection	GT:AD:AF:DP	1/1:0,510:1.00:510
chr10	115612657	.	T	G	10023.77	.	AC=1;AF=0.500;AN=2;DP=968;set=Intersection	GT:AD:AF:DP	0/1:482,477:0.50:959
chr10	115675025	rs7895609	G	A	9432.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:0,343:1.00:343
chr10	115805056	rs1801253	G	C	7753.77	.	AC=1;AF=0.500;AN=2;DB;DP=836;set=Intersection	GT:AD:AF:DP	0/1:426,400:0.48:826
chr10	115889872	rs606682	A	G	1008.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:35,41:0.54:76
chr10	115904185	rs71303586	A	AC	868.73	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:43,30:0.41:73
chr10	115910928	rs7095762	G	T	1909.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:88,92:0.51:180
chr10	115917162	rs36078992	GC	G	212.73	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:16,8:0.33:24
chr10	115922492	rs12782946	C	T	2519.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:120,118:0.50:238
chr10	115922774	rs1061159	G	A	2724.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:125,128:0.51:253
chr10	115933087	rs12767831	C	A	256.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:22,14:0.39:36
chr10	115963126	rs11313522	CT	C	1820.73	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:131,118:0.47:249
chr10	115963813	rs10885537	C	T	896.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:31,38:0.55:69
chr10	115966147	rs17091424	C	G	673.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:54,34:0.39:88
chr10	115973032	rs34518857	TG	T	997.73	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:19,26:0.58:45
chr10	115973040	rs17715067	A	G	1083.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:21,29:0.58:50
chr10	115980324	rs35826066	T	C	3295.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:108,144:0.57:252
chr10	115985784	rs34291959	C	T	2555.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:133,123:0.48:256
chr10	115986065	rs12265237	G	A	1005.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:39,45:0.54:84
chr10	115991124	rs34511189	G	A	958.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.807;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.31;ReadPosRankSum=0.376;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:20,25:0.56:45
chr10	115991133	rs35101269	C	T	1034.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.751;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.52;ReadPosRankSum=0.636;SOR=0.418;set=HC	GT:AD:AF:DP	0/1:25,28:0.53:53
chr10	115991227	rs66725970	AT	A	1721.73	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:125,108:0.46:233
chr10	116008331	rs71484935	T	C	1192.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:52,50:0.49:102
chr10	116008497	rs9664945	G	A	5838.77	.	AC=1;AF=0.500;AN=2;DB;DP=576;set=Intersection	GT:AD:AF:DP	0/1:286,287:0.50:573
chr10	116013312	rs74497758	C	A	5219.77	.	AC=1;AF=0.500;AN=2;DB;DP=567;set=Intersection	GT:AD:AF:DP	0/1:303,260:0.46:563
chr10	116020974	rs71484937	C	G	5144.77	.	AC=1;AF=0.500;AN=2;DB;DP=505;set=Intersection	GT:AD:AF:DP	0/1:249,255:0.51:504
chr10	116058933	rs1889450	G	A	1322.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr10	116060194	rs3214266	A	AG	11697.73	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:0,333:1.00:333
chr10	116060387	rs2286396	T	C	15920.77	.	AC=2;AF=1.00;AN=2;DB;DP=593;set=Intersection	GT:AD:AF:DP	1/1:2,584:1.00:586
chr10	116068176	rs581327	A	G	4967.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr10	116073696	rs3813722	C	T	15120.77	.	AC=2;AF=1.00;AN=2;DB;DP=578;set=Intersection	GT:AD:AF:DP	1/1:0,568:1.00:568
chr10	116075228	rs694883	A	G	1894.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr10	116075271	rs377755078	T	TCC	5300.73	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr10	116079505	rs10885547	G	A	4059.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr10	116085784	rs74928179	C	CCCG	19830.73	.	AC=2;AF=1.00;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	1/1:0,445:1.00:445
chr10	116091555	rs10787524	T	C	4794.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr10	116100320	rs4752395	T	G	5933.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr10	116196143	rs373508923	GA	G	400.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.337;ClippingRankSum=0.000;DB;DP=297;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=2.320;QD=1.62;ReadPosRankSum=1.193;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:188,59:0.24:247
chr10	116203906	rs72826956	A	C	1193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.913;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=3.862;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=-0.039;QD=8.12;ReadPosRankSum=1.893;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:71,76:0.52:147
chr10	116203911	rs11338035	GA	G	2001.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.572;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=0.808;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=1.104;QD=18.36;ReadPosRankSum=-0.911;SOR=0.605;set=HC	GT:AD:AF:DP	0/1:30,79:0.72:109
chr10	116203974	rs10160093	A	G	583.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:15,24:0.62:39
chr10	116205267	rs6585279	C	T	2121.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:84,89:0.51:173
chr10	116211246	rs2145895	A	G	599.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:20,23:0.53:43
chr10	116222749	rs7920878	G	A	1394.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.217;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=0.707;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.02;ReadPosRankSum=1.749;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:49,67:0.58:116
chr10	116225365	rs7899255	G	A	812.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:37,36:0.49:73
chr10	116228048	rs1815248	G	T	1401.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:60,61:0.50:121
chr10	116304971	rs2483595	T	C	1783.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr10	116307504	rs2247528	A	G	11960.77	.	AC=2;AF=1.00;AN=2;DB;DP=467;set=Intersection	GT:AD:AF:DP	1/1:3,461:0.99:464
chr10	116335246	rs985273	G	A	13192.77	.	AC=2;AF=1.00;AN=2;DB;DP=501;set=Intersection	GT:AD:AF:DP	1/1:1,492:1.00:493
chr10	116593175	rs11196939	C	T	3186.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:170,152:0.47:322
chr10	116596071	rs17095662	A	C	1863.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:84,80:0.49:164
chr10	116605103	rs2420069	A	G	3130.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:134,146:0.52:280
chr10	116606173	rs3834423	C	CT	1717.73	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:52,52:0.50:104
chr10	116615045	rs3180654	T	C	4168.77	.	AC=1;AF=0.500;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	0/1:206,209:0.50:415
chr10	116621154	rs34064819	C	A	1990.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:120,100:0.45:220
chr10	116622339	rs41284358	A	G	824.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:32,33:0.51:65
chr10	116659253	rs10885629	A	G	6045.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:2,225:0.99:227
chr10	116719543	rs7099565	G	A	7186.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:2,272:0.99:274
chr10	116730337	rs6585309	G	A	1957.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr10	116856543	rs1264777	T	C	1090.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr10	116931101	rs3086141	C	CTT	4099.73	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr10	117075175	rs1953758	G	A	3404.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr10	117226880	rs17723399	T	G	302.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:21,16:0.43:37
chr10	117228946	rs12770375	C	T	262.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:16,13:0.45:29
chr10	117278988	rs6421370	G	C	1010.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr10	117308880	rs1336109	A	G	263.73	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:14,12:0.46:26
chr10	117309098	rs1336108	G	A	226.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:17,11:0.39:28
chr10	117357169	rs11197326	G	A	416.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr10	117357264	rs11197327	G	A	178.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:15,10:0.40:25
chr10	117486910	rs2286631	T	G	1773.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:56,74:0.57:130
chr10	117856379	rs66851912	TGCACAC	T	2030.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:28,67:0.71:95
chr10	117856386	rs376047022	GCACACGCA	G	351.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.793;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.81;MQRankSum=0.225;QD=3.55;ReadPosRankSum=0.336;SOR=0.821;set=HC	GT:AD:AF:DP	0/1:71,28:0.28:99
chr10	117884950	rs2245020	G	A	8360.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr10	117971016	rs7090693	T	C	4260.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr10	117986207	rs7094346	G	T	1589.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.64;SOR=1.057;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr10	118031376	rs2532691	C	A	6396.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.193;ClippingRankSum=0.000;DB;DP=249;ExcessHet=3.0103;FS=3.709;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.69;ReadPosRankSum=-0.731;SOR=0.740;set=HC	GT:AD:AF:DP	1/1:1,248:1.00:249
chr10	118031619	rs2577360	G	A	806.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr10	118101487	rs139493735	AT	A	477.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr10	118187399	rs10787669	T	G	769.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.28;SOR=3.383;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr10	118187405	rs10787670	T	C	844.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.23;SOR=2.636;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr10	118215150	rs34077637	C	CT	709.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:3,38:0.93:41
chr10	118228763	rs7077408	T	C	4563.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr10	118231305	rs10510020	A	G	7025.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr10	118231360	rs10736251	G	A	9361.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.14;SOR=0.721;set=HC	GT:AD:AF:DP	1/1:0,217:1.00:217
chr10	118231363	rs1897519	A	G	9458.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.41;SOR=0.780;set=HC	GT:AD:AF:DP	1/1:0,213:1.00:213
chr10	118231413	rs10885939	C	T	4440.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr10	118310802	rs200851172	CAA	C,CA	1514.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.594;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=12.02;ReadPosRankSum=2.197;SOR=0.730;set=HC	GT:AD:AF:DP	1/2:18,40,68:0.32,0.54:126
chr10	118313456	.	TA	T	32.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.311;ClippingRankSum=0.000;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.70;ReadPosRankSum=-2.037;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:34,13:0.28:47
chr10	118351905	rs1867991	A	C	3946.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr10	118355695	rs2915765	A	T	23548.77	.	AC=2;AF=1.00;AN=2;DB;DP=896;set=Intersection	GT:AD:AF:DP	1/1:0,887:1.00:887
chr10	118357490	rs2915764	C	T	15396.77	.	AC=2;AF=1.00;AN=2;DB;DP=579;set=Intersection	GT:AD:AF:DP	1/1:0,566:1.00:566
chr10	118359548	rs3816355	T	C	5161.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr10	118363642	rs3010501	T	C	6030.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr10	118364818	rs2915754	G	T	1524.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr10	118364842	rs2915753	A	G	2497.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr10	118368493	rs201976882	CCAAAA	C	16002.73	.	AC=2;AF=1.00;AN=2;DB;DP=426;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=63.32;QD=39.13;SOR=1.011;set=HC	GT:AD:AF:DP	1/1:0,409:1.00:409
chr10	118368606	rs1049125	T	C	16190.77	.	AC=2;AF=1.00;AN=2;DB;DP=629;set=Intersection	GT:AD:AF:DP	1/1:0,624:1.00:624
chr10	118380345	rs12415178	C	T	2263.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:2,87:0.98:89
chr10	118380387	rs12412456	A	G	3318.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:2,122:0.98:124
chr10	118380511	rs3010502	A	G	3312.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr10	118380629	rs3214321	TC	T	1414.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:1,42:0.98:43
chr10	118383382	rs12256398	C	T	4906.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:1,179:0.99:180
chr10	118383463	rs56189579	A	AG	13106.73	.	AC=2;AF=1.00;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	1/1:0,353:1.00:353
chr10	118383703	rs2286776	C	T	869.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr10	118386325	rs9787637	C	A	3137.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr10	118387137	rs7092580	A	G	1348.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr10	118387148	rs12768167	C	T	2198.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.433;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=5.962;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=42.28;ReadPosRankSum=2.454;SOR=3.745;set=HC	GT:AD:AF:DP	1/1:2,50:0.96:52
chr10	118387152	rs12768516	G	A	2255.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.047;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=5.328;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=39.57;ReadPosRankSum=2.042;SOR=3.383;set=HC	GT:AD:AF:DP	1/1:2,55:0.96:57
chr10	118387282	rs11544712	A	G	7959.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr10	118387454	rs12768804	C	T	1197.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr10	118389690	rs12763549	A	G	5079.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr10	118391063	rs10885995	C	A	2224.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr10	118394551	rs2286779	G	C	3528.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr10	118396277	rs112820043	G	GT	66.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.254;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=0.940;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.49;ReadPosRankSum=1.445;SOR=0.524;set=HC	GT:AD:AF:DP	0/1:113,23:0.17:136
chr10	118396278	rs11197776	G	T	3019.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:8,129:0.94:137
chr10	118397884	rs4751995	A	G	3876.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.56;SOR=0.911;set=HC	GT:AD:AF:DP	1/1:0,89:1.00:89
chr10	118397894	rs4751996	A	G	4043.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.02;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr10	118397971	rs10885997	A	G	2529.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr10	118398046	rs7910135	C	A	1670.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr10	118404620	rs2301179	A	G	9659.77	.	AC=2;AF=1.00;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	1/1:0,363:1.00:363
chr10	118404700	rs2301178	G	A	6996.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr10	118436068	rs2166634	G	T	6576.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr10	118466659	rs146552482	TGC	T	50.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.115;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.99;ReadPosRankSum=0.983;SOR=0.877;set=HC	GT:AD:AF:DP	0/1:41,10:0.20:51
chr10	118466662	.	G	GCA	685.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.250;ClippingRankSum=0.000;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.70;ReadPosRankSum=-1.278;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:21,33:0.61:54
chr10	118466664	rs79355850	G	A	1551.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.151;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.71;ReadPosRankSum=-1.113;SOR=0.605;set=HC	GT:AD:AF:DP	0/1:10,46:0.82:56
chr10	118501765	rs3095121	A	C	990.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr10	118620459	rs11197835	A	C	14210.77	.	AC=2;AF=1.00;AN=2;DB;DP=528;set=Intersection	GT:AD:AF:DP	1/1:0,515:1.00:515
chr10	118620732	rs56177931	TAA	T	482.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.766;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.42;MQRankSum=0.759;QD=11.49;ReadPosRankSum=0.795;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:14,28:0.67:42
chr10	118628036	rs1637571	G	A	2442.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr10	118630711	.	C	A	5127.77	.	AC=1;AF=0.500;AN=2;DP=526;set=Intersection	GT:AD:AF:DP	0/1:266,248:0.48:514
chr10	118633548	rs1637574	A	G	4840.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr10	118643670	rs2257791	G	A	7474.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr10	118646129	rs2531685	G	C	6892.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr10	118667346	rs2531690	A	C	19542.77	.	AC=2;AF=1.00;AN=2;DB;DP=756;set=Intersection	GT:AD:AF:DP	1/1:0,748:1.00:748
chr10	118708315	rs10595325	GAGA	G	2831.73	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr10	119001151	rs2619094	A	C	1283.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:1,43:0.98:44
chr10	119003564	rs363387	T	G	3746.77	.	AC=1;AF=0.500;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	0/1:253,193:0.43:446
chr10	119003845	rs11568723	CAA	C	8502.73	.	AC=1;AF=0.500;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	0/1:179,219:0.55:398
chr10	119013080	rs2256299	T	G	298.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.88;QD=24.90;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr10	119014023	rs2072362	C	T	3060.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr10	119014931	rs363420	C	T	15662.77	.	AC=2;AF=1.00;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	1/1:0,366:1.00:366
chr10	119014948	rs363343	C	A	15411.77	.	AC=2;AF=1.00;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	1/1:0,352:1.00:352
chr10	119026401	rs363266	T	C	2792.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr10	119026566	rs363227	T	C	6708.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr10	119027123	rs363228	C	A	1573.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr10	119027411	rs363271	G	T	1442.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr10	119029515	rs363230	C	T	4789.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr10	119029744	rs363272	G	A	10125.77	.	AC=2;AF=1.00;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	1/1:0,366:1.00:366
chr10	119042761	rs363293	C	T	7681.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr10	119303297	rs8192644	G	A	4940.77	.	AC=1;AF=0.500;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	0/1:179,205:0.53:384
chr10	119768551	rs7923321	C	T	13671.77	.	AC=2;AF=1.00;AN=2;DB;DP=521;set=Intersection	GT:AD:AF:DP	1/1:0,515:1.00:515
chr10	119793442	rs11198243	G	A	3094.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr10	119793629	rs2928118	C	T	1728.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr10	120070427	rs4751651	G	T	1234.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.72;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr10	120070709	rs3213691	G	A	449.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr10	120070843	rs34120011	G	GA	1020.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.098;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=20.83;ReadPosRankSum=0.405;SOR=0.823;set=HC	GT:AD:AF:DP	1/1:2,47:0.96:49
chr10	120081948	rs853911	C	T	7321.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr10	120353910	rs1613448	T	C	10928.77	.	AC=2;AF=1.00;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	1/1:0,395:1.00:395
chr10	120445794	rs752483	G	A	2469.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:99,109:0.52:208
chr10	120460715	rs2274314	G	T	4178.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr10	120467213	.	CAA	C	83.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.120;ClippingRankSum=0.000;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.79;ReadPosRankSum=-1.060;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:22,8:0.27:30
chr10	120796572	rs11336519	TC	T	50.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.210;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=3.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.64;ReadPosRankSum=1.180;SOR=0.069;set=HC	GT:AD:AF:DP	0/1:4,5:0.56:9
chr10	120796576	.	C	A	59.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.248;ClippingRankSum=-0.000;DP=20;ExcessHet=3.0103;FS=7.404;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.43;ReadPosRankSum=2.042;SOR=0.036;set=HC	GT:AD:AF:DP	0/1:6,5:0.45:11
chr10	120803746	rs3740553	T	C	2240.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr10	120817450	rs10886375	A	G	8646.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr10	120818609	rs6585524	C	T	1085.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr10	120819453	rs10787901	A	G	1293.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.61;SOR=2.546;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr10	120819458	rs10787902	T	C	1319.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.24;SOR=2.165;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr10	120820224	rs3740555	C	A	3488.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr10	120828969	rs7908387	A	G	1168.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr10	120832872	rs1397616	T	C	712.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr10	120864868	rs1511033	T	C	2043.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr10	120883117	rs372448900	CT	C	2610.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.328;ClippingRankSum=0.000;DB;DP=595;ExcessHet=3.0103;FS=1.091;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=1.836;QD=6.91;ReadPosRankSum=-0.523;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:121,257:0.68:378
chr10	120896027	rs11198799	G	A	8935.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:0,336:1.00:336
chr10	120905972	rs141608372	T	TGTGC,TGTGTGC	5781.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=189;set=Intersection	GT:AF:DP	1/2:0.60,0.39:134
chr10	120905975	rs61874341	A	G	7479.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr10	120914692	rs17668734	G	A	12735.77	.	AC=2;AF=1.00;AN=2;DB;DP=482;set=Intersection	GT:AD:AF:DP	1/1:0,479:1.00:479
chr10	120916467	rs2297696	A	G	795.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr10	120917269	rs2420494	A	T	7744.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr10	120917616	rs2275112	G	A	10266.77	.	AC=2;AF=1.00;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	1/1:0,368:1.00:368
chr10	120919246	rs2181118	T	C	12329.77	.	AC=2;AF=1.00;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	1/1:0,457:1.00:457
chr10	120922017	rs12413842	T	C	13527.77	.	AC=2;AF=1.00;AN=2;DB;DP=523;set=Intersection	GT:AD:AF:DP	1/1:0,520:1.00:520
chr10	120922075	rs35233430	T	C	2931.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:125,133:0.52:258
chr10	120923780	rs59832388	C	CT	581.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.648;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=1.315;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.38;ReadPosRankSum=1.009;SOR=0.487;set=HC	GT:AD:AF:DP	0/1:18,44:0.71:62
chr10	120924874	rs933092	G	C	10507.77	.	AC=2;AF=1.00;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	1/1:0,390:1.00:390
chr10	120933324	rs3758609	G	A	1562.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr10	121085926	rs143234689	G	A	558.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:27,26:0.49:53
chr10	121093160	rs10886461	A	C	1973.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr10	121137660	rs78955388	T	C	812.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:20,39:0.66:59
chr10	121140511	rs4751714	A	G	4933.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr10	121140534	rs2275037	C	G	4311.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr10	121156151	rs41284420	C	T	1072.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:56,53:0.49:109
chr10	121190040	rs10787967	C	G	775.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:40,36:0.47:76
chr10	121190113	rs915120	T	C	364.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:12,18:0.60:30
chr10	121196062	rs2275040	C	T	848.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:31,34:0.52:65
chr10	121199189	rs2245364	T	C	16268.77	.	AC=2;AF=1.00;AN=2;DB;DP=612;set=Intersection	GT:AD:AF:DP	1/1:0,606:1.00:606
chr10	121199310	rs1109490	T	C	4660.77	.	AC=1;AF=0.500;AN=2;DB;DP=553;set=Intersection	GT:AD:AF:DP	0/1:305,240:0.44:545
chr10	121199365	rs1109489	T	C	2537.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:159,130:0.45:289
chr10	121199437	rs915116	T	C	2169.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr10	121201616	rs2275043	C	T	2888.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:133,136:0.51:269
chr10	121201626	rs2275044	T	C	2226.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:119,113:0.49:232
chr10	121275099	rs11550215	G	A	2602.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:134,127:0.49:261
chr10	121287019	rs3009921	G	A	3617.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr10	121296029	rs11199005	G	A	7368.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.626;ClippingRankSum=0.000;DB;DP=733;ExcessHet=3.0103;FS=1.088;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.12;ReadPosRankSum=-1.020;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:360,368:0.51:728
chr10	121301983	rs12265024	C	T	159.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:17,9:0.35:26
chr10	121302244	rs77190301	G	A	919.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.448;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=4.847;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.76;ReadPosRankSum=-0.315;SOR=1.002;set=HC	GT:AD:AF:DP	0/1:57,48:0.46:105
chr10	121336248	rs12356865	T	C	7037.77	.	AC=1;AF=0.500;AN=2;DB;DP=674;set=Intersection	GT:AD:AF:DP	0/1:343,329:0.49:672
chr10	121338401	rs4752334	T	A	8137.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:1,293:1.00:294
chr10	121347832	rs11199031	C	A	1476.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:61,60:0.50:121
chr10	121347839	rs146020828	TTTTC	T	448.73	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:34,31:0.48:65
chr10	121435955	rs196294	A	C	4111.77	.	AC=1;AF=0.500;AN=2;DB;DP=465;set=Intersection	GT:AD:AF:DP	0/1:258,203:0.44:461
chr10	121436362	rs196295	A	G	4508.77	.	AC=1;AF=0.500;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	0/1:195,204:0.51:399
chr10	121564859	rs2273748	A	G	1663.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr10	121565015	rs2273749	C	G	4916.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr10	121583382	rs41309996	G	A	4952.77	.	AC=1;AF=0.500;AN=2;DB;DP=500;set=Intersection	GT:AD:AF:DP	0/1:254,237:0.48:491
chr10	121597897	rs11199103	A	G	161.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr10	121618787	.	TAC	T	181	.	AC=1;AF=0.500;AN=2;BRF=0.46;FR=0.5000;HP=1;HapScore=4;MGOF=18;MMLQ=24;MQ=60.58;NF=1;NR=8;PP=181;QD=20.4444444444;SC=CTCAAACTGTTACACACACAC;SbPval=0.65;Source=Platypus;TC=18;TCF=2;TCR=16;TR=9;WE=121618800;WS=121618777;set=Platypus	GT:AD:AF:DP	0/1:9,9:0.50:18
chr10	121657801	rs144326454	CTG	C	2520.73	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr10	121663483	rs2475304	C	T	1533.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr10	121663608	rs147722288	C	T	2724.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:123,126:0.51:249
chr10	121675238	.	C	CT	97.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.882;ClippingRankSum=0.000;DP=156;ExcessHet=3.0103;FS=4.491;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.64;ReadPosRankSum=-0.167;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:125,28:0.18:153
chr10	121678896	rs2475300	C	G	2390.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr10	121679013	rs2475298	A	G	8987.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:0,337:1.00:337
chr10	121685448	rs6585564	A	T	1439.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr10	121717932	rs11199132	G	A	3871.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr10	121717956	rs34665773	GT	G	2226.73	.	AC=1;AF=0.500;AN=2;DB;DP=157;MQ=60.28;set=Intersection	GT:AD:AF:DP	0/1:22,127:0.85:149
chr10	121718112	rs11199134	C	T	5568.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr10	122216790	rs10886691	A	T	6192.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr10	122263555	rs2478418	A	T	634.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:34,28:0.45:62
chr10	122273276	rs5788426	CT	C	1091.73	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:50,71:0.59:121
chr10	122334561	rs4751791	C	T	1671.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:99,78:0.44:177
chr10	122619466	.	T	TAC	1031.73	.	AC=1;AF=0.500;AN=2;DP=96;set=Intersection	GT:AD:AF:DP	0/1:50,42:0.46:92
chr10	122640234	rs146761885	A	AG	546.73	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:28,22:0.44:50
chr10	122663585	rs1652727	G	A	1522.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:108,81:0.43:189
chr10	122663676	.	T	C	771.77	.	AC=1;AF=0.500;AN=2;DP=115;set=Intersection	GT:AD:AF:DP	0/1:68,42:0.38:110
chr10	122664378	rs72842639	A	G	4739.77	.	AC=1;AF=0.500;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	0/1:232,220:0.49:452
chr10	122665285	rs1652726	A	C	1473.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr10	123239112	rs1047057	G	A	6543.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr10	123243197	rs2278202	G	A	4450.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:1,164:0.99:165
chr10	123246732	rs148450955	TTTCTAAGGCCAGCTCCTGCACC	T	1854.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr10	123247037	rs2981461	C	T	1454.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.79;SOR=2.049;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr10	123247044	rs2981460	T	C	1366.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.09;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr10	123277742	rs2420942	C	T	944.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr10	123279745	rs2981448	C	T	1419.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr10	123298158	rs1047100	T	C	10887.77	.	AC=2;AF=1.00;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	1/1:0,397:1.00:397
chr10	123503431	rs71852543	C	CT	259.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.198;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=0.063;QD=4.90;ReadPosRankSum=-1.418;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:30,23:0.43:53
chr10	123549691	rs35350755	T	G	1446.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:83,75:0.47:158
chr10	123596254	rs4237536	T	C	1011.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr10	123673339	rs10749435	T	C	19381.77	.	AC=2;AF=1.00;AN=2;DB;DP=735;set=Intersection	GT:AD:AF:DP	1/1:0,726:1.00:726
chr10	123719835	rs10887033	T	A	454.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:45,24:0.35:69
chr10	123721624	rs71022875	TA	T	105.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.322;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.54;MQRankSum=0.919;QD=5.29;ReadPosRankSum=-0.271;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:8,12:0.60:20
chr10	123724701	rs34074742	AC	A	3960.73	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr10	123724705	rs11351821	G	A	1144.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:56,47:0.46:103
chr10	123724767	rs4752626	T	G	9120.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:1,327:1.00:328
chr10	123730685	rs371483590	T	TAA	709.92	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.873;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.92;ReadPosRankSum=0.788;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:11,40:0.78:51
chr10	123842065	rs2459103	A	G	2638.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr10	123842498	rs41288000	T	A	7035.77	.	AC=1;AF=0.500;AN=2;DB;DP=721;set=Intersection	GT:AD:AF:DP	0/1:380,326:0.46:706
chr10	123842523	rs11200385	G	A	7382.77	.	AC=1;AF=0.500;AN=2;DB;DP=659;set=Intersection	GT:AD:AF:DP	0/1:307,338:0.52:645
chr10	123844503	rs10887063	C	T	4446.77	.	AC=1;AF=0.500;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	0/1:231,206:0.47:437
chr10	123845211	rs11200387	G	A	5187.77	.	AC=1;AF=0.500;AN=2;DB;DP=473;set=Intersection	GT:AD:AF:DP	0/1:220,248:0.53:468
chr10	123845322	rs7073433	T	C	10497.77	.	AC=2;AF=1.00;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	1/1:0,395:1.00:395
chr10	123845897	rs1106992	G	C	6057.77	.	AC=1;AF=0.500;AN=2;DB;DP=529;set=Intersection	GT:AD:AF:DP	0/1:253,273:0.52:526
chr10	123846288	rs4752642	G	A	4843.77	.	AC=1;AF=0.500;AN=2;DB;DP=526;set=Intersection	GT:AD:AF:DP	0/1:282,233:0.45:515
chr10	123846485	rs4751871	A	G	3990.77	.	AC=1;AF=0.500;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	0/1:196,189:0.49:385
chr10	123846860	rs11599291	C	T	6927.77	.	AC=1;AF=0.500;AN=2;DB;DP=667;set=Intersection	GT:AD:AF:DP	0/1:346,320:0.48:666
chr10	123847355	rs10788237	G	A	3712.77	.	AC=1;AF=0.500;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	0/1:172,171:0.50:343
chr10	123903133	rs12765679	G	A	4413.77	.	AC=1;AF=0.500;AN=2;DB;DP=485;set=Intersection	GT:AD:AF:DP	0/1:262,216:0.45:478
chr10	123970722	rs2295876	T	A	3781.77	.	AC=1;AF=0.500;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	0/1:200,174:0.47:374
chr10	123976029	rs2281670	A	G	511.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:31,26:0.46:57
chr10	123976391	rs10444046	C	A	15728.77	.	AC=2;AF=1.00;AN=2;DB;DP=584;set=Intersection	GT:AD:AF:DP	1/1:0,580:1.00:580
chr10	124001284	rs17559976	T	C	449.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:26,19:0.42:45
chr10	124009261	rs10887111	G	C	1653.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr10	124036226	rs7086403	T	C	2843.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:141,133:0.49:274
chr10	124036494	rs7090214	T	C	637.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:35,25:0.42:60
chr10	124043629	rs7098436	T	C	1281.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:60,52:0.46:112
chr10	124152936	rs3838776	G	GA	1333.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr10	124175273	rs4751892	G	A	1080.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr10	124176452	rs4612730	G	A	988.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:80,53:0.40:133
chr10	124183687	rs34058512	G	GTT	148.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.792;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.56;MQRankSum=-0.000;QD=14.87;ReadPosRankSum=-0.000;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:4,6:0.60:10
chr10	124183692	.	T	C	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.605;ClippingRankSum=-0.000;DP=13;ExcessHet=3.0103;FS=3.424;MLEAC=1;MLEAF=0.500;MQ=59.56;MQRankSum=-0.000;QD=3.15;ReadPosRankSum=1.161;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:9,3:0.25:12
chr10	124183732	rs4405249	T	C	1249.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:1,49:0.98:50
chr10	124184567	rs9783213	G	A	298.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:28,16:0.36:44
chr10	124186714	rs2292626	C	T	618.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:19,29:0.60:48
chr10	124189010	rs10591719	TTGTGTG	T	1674.73	.	AC=1;AF=0.500;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.18;QD=52.34;SOR=3.528;set=HC	GT:AD:AF:DP	0/1:7,25:0.78:32
chr10	124189113	rs72832716	G	A	2647.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:129,118:0.48:247
chr10	124189197	rs1045216	A	G	12380.77	.	AC=2;AF=1.00;AN=2;DB;DP=476;set=Intersection	GT:AD:AF:DP	1/1:0,472:1.00:472
chr10	124214251	rs10490923	G	A	1339.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:55,59:0.52:114
chr10	124214448	rs10490924	G	T	4029.77	.	AC=1;AF=0.500;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	0/1:199,190:0.49:389
chr10	124214600	rs144224550	G	GGT	1807.73	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:69,49:0.42:118
chr10	124216384	rs72511653	C	CTA	3367.73	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr10	124216397	rs36213074	T	C	884.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:54,42:0.44:96
chr10	124216410	rs7088128	A	G	1108.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:78,50:0.39:128
chr10	124221270	rs1049331	C	T	363.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.164;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.55;ReadPosRankSum=0.639;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:14,11:0.44:25
chr10	124221276	rs2293870	G	T	368.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.175;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.76;ReadPosRankSum=-0.456;SOR=0.409;set=HC	GT:AD:AF:DP	0/1:11,11:0.50:22
chr10	124271589	rs2672586	G	A	2329.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr10	124320194	rs2981745	T	C	5680.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr10	124325409	rs3019515	T	G	11026.77	.	AC=2;AF=1.00;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	1/1:0,415:1.00:415
chr10	124325569	rs3019516	A	G	4001.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr10	124325631	rs2981768	T	C	1255.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr10	124329580	rs11524819	C	A	5916.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.17;SOR=1.918;set=HC	GT:AD:AF:DP	1/1:0,131:1.00:131
chr10	124329583	rs11524820	G	A	5990.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.05;SOR=1.828;set=HC	GT:AD:AF:DP	1/1:0,136:1.00:136
chr10	124329672	rs3740220	TC	CT	14410.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chr10	124329710	rs11523871	C	A	7706.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr10	124329746	rs3740222	A	T	6088.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr10	124329801	rs3740223	G	A	3123.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr10	124330240	rs2981790	A	G	5376.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr10	124330252	rs2981791	A	G	6549.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr10	124330427	rs3013236	C	T	14908.77	.	AC=2;AF=1.00;AN=2;DB;DP=563;set=Intersection	GT:AD:AF:DP	1/1:0,550:1.00:550
chr10	124331867	rs7084792	C	T	11147.77	.	AC=2;AF=1.00;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	1/1:0,415:1.00:415
chr10	124331944	rs2277229	C	T	13081.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr10	124331957	rs2277230	T	C	12677.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.77;SOR=1.366;set=HC	GT:AD:AF:DP	1/1:0,277:1.00:277
chr10	124331963	rs2277231	A	G	11876.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.68;SOR=1.384;set=HC	GT:AD:AF:DP	1/1:0,260:1.00:260
chr10	124332035	rs2277232	T	C	2444.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr10	124333308	rs2277235	G	A	7154.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr10	124335866	rs1985025	C	T	5387.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr10	124389296	rs3013177	C	G	1518.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:56,59:0.51:115
chr10	124399467	rs2261655	C	T	354.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:30,16:0.35:46
chr10	124399985	rs2261660	G	T	2192.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:139,104:0.43:243
chr10	124402677	rs1052715	A	G	5662.77	.	AC=1;AF=0.500;AN=2;DB;DP=694;set=Intersection	GT:AD:AF:DP	0/1:386,297:0.43:683
chr10	124402944	rs8441	G	A	870.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:44,35:0.44:79
chr10	124436375	rs72836153	G	A	2347.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:123,114:0.48:237
chr10	124436530	rs3019500	G	T	772.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:34,35:0.51:69
chr10	124457452	rs2947594	C	T	9998.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	1/1:2,367:0.99:369
chr10	124457906	rs2901343	C	T	5294.77	.	AC=1;AF=0.500;AN=2;DB;DP=497;set=Intersection	GT:AD:AF:DP	0/1:245,243:0.50:488
chr10	124459139	rs11813597	T	C	985.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:55,46:0.46:101
chr10	124594153	rs11248321	A	G	2426.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr10	124595874	rs11365591	GA	G	229.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.283;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=1.720;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.56;ReadPosRankSum=0.651;SOR=0.407;set=HC	GT:AD:AF:DP	0/1:12,23:0.66:35
chr10	124610027	rs1891110	G	A	9651.77	.	AC=2;AF=1.00;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	1/1:0,337:1.00:337
chr10	124745744	.	CA	C	49.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.221;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.39;MQRankSum=1.294;QD=2.26;ReadPosRankSum=-0.356;SOR=0.791;set=HC	GT:AD:AF:DP	0/1:13,9:0.41:22
chr10	124800853	rs1140591	C	T	9619.77	.	AC=2;AF=1.00;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	1/1:0,362:1.00:362
chr10	124810746	rs3833736	C	CT	101.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=14.54;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr10	124812487	rs2421166	A	G	4166.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr10	124812685	rs11307362	AT	A	3813.73	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:16,223:0.93:239
chr10	124908199	rs184734761	G	A	3050.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:152,157:0.51:309
chr10	124924484	rs34736387	CT	C	560.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.445;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.048;QD=5.55;ReadPosRankSum=1.822;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:55,46:0.46:101
chr10	125426565	rs4980313	G	C	10481.77	.	AC=2;AF=1.00;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	1/1:2,406:1.00:408
chr10	125472862	rs2114678	A	G	1328.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:63,63:0.50:126
chr10	125472937	rs2114677	T	C	794.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:39,36:0.48:75
chr10	125506302	rs7088479	T	C	7940.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr10	125521533	rs10794566	G	A	4060.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.786;ClippingRankSum=0.000;DB;DP=527;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.78;ReadPosRankSum=1.396;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:299,223:0.43:522
chr10	125521590	rs10794567	G	A	4644.77	.	AC=1;AF=0.500;AN=2;DB;DP=508;set=Intersection	GT:AD:AF:DP	0/1:279,226:0.45:505
chr10	125521721	rs10751743	G	A	5130.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:1,182:0.99:183
chr10	125521751	rs10794568	C	G	3239.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:1,112:0.99:113
chr10	125526689	rs1896392	G	A	505.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:31,20:0.39:51
chr10	125527964	rs1219727	G	A	1575.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:26,39:0.60:65
chr10	125528007	rs1219726	A	G	3321.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:80,85:0.52:165
chr10	125528048	rs1219725	G	A	4202.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:113,132:0.54:245
chr10	125528297	rs1219724	T	G	1200.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:57,54:0.49:111
chr10	125530746	rs727416	C	T	4476.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr10	125557769	rs11356678	GA	G	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.815;ClippingRankSum=-0.000;DB;DP=29;ExcessHet=3.0103;FS=3.274;MLEAC=1;MLEAF=0.500;MQ=60.37;MQRankSum=0.629;QD=2.22;ReadPosRankSum=0.660;SOR=0.084;set=HC	GT:AD:AF:DP	0/1:8,9:0.53:17
chr10	125602021	rs10794571	C	T	6140.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr10	125602943	rs6599625	G	A	13201.77	.	AC=2;AF=1.00;AN=2;DB;DP=403;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.13;QD=33.25;SOR=1.202;set=HC	GT:AD:AF:DP	1/1:0,397:1.00:397
chr10	125602948	rs5788632	A	AT	1553.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.511;ClippingRankSum=0.000;DB;DP=345;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=0.962;QD=8.01;ReadPosRankSum=0.285;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:67,127:0.65:194
chr10	125622250	rs11299200	CA	C	6681.73	.	AC=1;AF=0.500;AN=2;DB;DP=474;set=Intersection	GT:AD:AF:DP	0/1:230,235:0.51:465
chr10	125622263	rs28469012	A	T	4839.77	.	AC=1;AF=0.500;AN=2;DB;DP=469;set=Intersection	GT:AD:AF:DP	0/1:233,233:0.50:466
chr10	125673492	rs7893288	A	G	2311.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:169,121:0.42:290
chr10	125673547	rs4329614	T	G	2733.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:151,132:0.47:283
chr10	125780752	rs5788645	CG	C	5524.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.063;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=13.643;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=36.35;ReadPosRankSum=1.080;SOR=2.731;set=HC	GT:AD:AF:DP	1/1:2,150:0.99:152
chr10	125780759	rs4072194	G	C	5612.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.439;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=25.890;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=35.30;ReadPosRankSum=1.415;SOR=2.575;set=HC	GT:AD:AF:DP	1/1:4,155:0.97:159
chr10	125780958	rs9422312	C	T	10582.77	.	AC=2;AF=1.00;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	1/1:3,399:0.99:402
chr10	125801761	rs28698985	A	T	920.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:27,35:0.56:62
chr10	125801809	rs28716482	C	A	1695.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:65,79:0.55:144
chr10	126086730	rs2459217	G	A	2867.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr10	126089434	rs11461	G	A	489.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr10	126089656	rs2459215	T	G	1472.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr10	126089703	rs2491158	G	A	909.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr10	126090430	rs17619406	A	G	16285.77	.	AC=2;AF=1.00;AN=2;DB;DP=629;set=Intersection	GT:AD:AF:DP	1/1:1,625:1.00:626
chr10	126090465	rs17681531	T	A	11458.77	.	AC=2;AF=1.00;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	1/1:1,430:1.00:431
chr10	126090562	rs2491159	T	C	2291.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:1,83:0.99:84
chr10	126093939	rs113080459	T	C	2365.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr10	126093991	rs9422807	T	C	3964.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr10	126150338	rs2459213	C	T	236.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:7,9:0.56:16
chr10	126150388	rs2491156	C	A	408.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:21,21:0.50:42
chr10	126172863	rs6597801	A	G	6574.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr10	126185451	rs10794134	T	C	881.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:42,36:0.46:78
chr10	126185618	rs3824810	A	G	2931.77	.	AC=1;AF=0.500;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	0/1:183,146:0.44:329
chr10	126185707	rs3824809	C	T	1132.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:64,54:0.46:118
chr10	126186771	rs17620824	A	G	2678.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:94,107:0.53:201
chr10	126302004	.	T	C	576	.	AC=1;AF=0.500;AN=2;BRF=0.34;FR=0.5000;HP=3;HapScore=2;MGOF=2;MMLQ=29;MQ=60.0;NF=0;NR=26;PP=576;QD=23.4912004826;SC=CCCCTGCCTCTCCTCCACCCG;SbPval=1.0;Source=Platypus;TC=63;TCF=0;TCR=63;TR=26;WE=126302012;WS=126301994;set=Platypus	GT:AD:AF:DP	1/0:37,26:0.41:63
chr10	126394993	rs3781447	C	G	473.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:30,23:0.43:53
chr10	126395123	rs7897256	T	C	9529.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:0,340:1.00:340
chr10	126471329	rs111307876	C	A	268.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:10,13:0.57:23
chr10	126471382	rs35267378	C	CA	480.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.067;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.58;ReadPosRankSum=0.570;SOR=0.368;set=HC	GT:AD:AF:DP	1/1:3,26:0.90:29
chr10	126480276	rs74866494	C	T	3890.77	.	AC=1;AF=0.500;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	0/1:202,191:0.49:393
chr10	126480556	rs10901821	T	C	439.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:20,21:0.51:41
chr10	126490581	rs146309339	C	T	1612.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:63,64:0.50:127
chr10	126505062	rs11451694	T	TA	1209.73	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:6,63:0.91:69
chr10	126517989	rs2303611	G	A	6180.77	.	AC=1;AF=0.500;AN=2;DB;DP=553;set=Intersection	GT:AD:AF:DP	0/1:255,293:0.53:548
chr10	126519851	rs140065578	G	T	4299.77	.	AC=1;AF=0.500;AN=2;DB;DP=501;set=Intersection	GT:AD:AF:DP	0/1:276,215:0.44:491
chr10	126629204	rs7074163	G	A	837.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:40,35:0.47:75
chr10	126660781	rs3802700	A	T	854.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:28,34:0.55:62
chr10	126662451	rs3740534	C	T	1090.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr10	126673560	.	G	GA	2074.73	.	AC=1;AF=0.500;AN=2;DP=339;set=Intersection	GT:AD:AF:DP	0/1:154,133:0.46:287
chr10	126686762	rs72828989	C	T	3526.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:160,167:0.51:327
chr10	126686827	rs1982225	T	A	1777.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:78,83:0.52:161
chr10	126692066	rs750600	C	A	985.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:56,48:0.46:104
chr10	126692193	rs750599	C	T	556.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr10	126715075	rs3781413	T	C	721.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:56,39:0.41:95
chr10	126715154	rs3781412	A	G	2915.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr10	126715159	.	A	AGCCGCAGGCTGGGGCTGCAGG	1286.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.196;ClippingRankSum=0.000;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.74;ReadPosRankSum=0.302;SOR=0.731;set=HC	GT:AD:AF:DP	0/1:70,31:0.31:101
chr10	126715436	rs3781411	C	T	4838.77	.	AC=1;AF=0.500;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	0/1:204,213:0.51:417
chr10	126715629	rs3781409	C	T	4619.77	.	AC=1;AF=0.500;AN=2;DB;DP=444;set=Intersection	GT:AD:AF:DP	0/1:224,214:0.49:438
chr10	126721495	rs144665239	C	T	2419.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:92,110:0.54:202
chr10	126727353	rs2289431	C	A	557.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:14,24:0.63:38
chr10	127265427	rs77774010	G	A	1817.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:95,92:0.49:187
chr10	127414473	.	TA	T	92.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.292;ClippingRankSum=0.000;DP=78;ExcessHet=3.0103;FS=1.248;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.63;ReadPosRankSum=-0.108;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:39,18:0.32:57
chr10	127426430	rs3740181	A	G	2040.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:76,92:0.55:168
chr10	127426588	rs3740180	C	A	2619.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:116,122:0.51:238
chr10	127426835	rs3943225	G	T	6565.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr10	127431047	rs72839211	T	C	401.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:25,22:0.47:47
chr10	127436411	rs2296832	T	C	5067.77	.	AC=1;AF=0.500;AN=2;DB;DP=485;set=Intersection	GT:AD:AF:DP	0/1:237,242:0.51:479
chr10	127441573	rs10751530	G	T	2031.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:97,91:0.48:188
chr10	127445408	rs4962313	G	T	1667.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:41,73:0.64:114
chr10	127460952	rs10901424	G	T	1199.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:53,55:0.51:108
chr10	127462525	rs10901425	A	G	7202.77	.	AC=1;AF=0.500;AN=2;DB;DP=903;set=Intersection	GT:AD:AF:DP	0/1:525,370:0.41:895
chr10	127462833	rs28381281	C	T	1236.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:75,62:0.45:137
chr10	127483396	rs112839143	TA	T	145.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.594;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.535;QD=1.34;ReadPosRankSum=2.233;SOR=0.578;set=HC	GT:AD:AF:DP	0/1:81,28:0.26:109
chr10	127483573	rs3740179	G	A	3014.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:181,151:0.45:332
chr10	127484617	rs2281955	C	G	853.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:39,34:0.47:73
chr10	127484653	rs2281954	G	A	1297.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:63,61:0.49:124
chr10	127491732	rs74366862	CT	C	1992.73	.	AC=1;AF=0.500;AN=2;DB;DP=144;MQ=60.08;set=Intersection	GT:AD:AF:DP	0/1:71,66:0.48:137
chr10	127500718	rs10901444	C	G	1836.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:76,78:0.51:154
chr10	127504660	rs2366044	A	G	6959.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr10	127515069	rs10159992	C	T	397.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:25,19:0.43:44
chr10	127520313	rs11596442	A	G	311.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:16,13:0.45:29
chr10	127522572	rs3740206	T	G	433.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:32,22:0.41:54
chr10	127524612	rs4075326	C	T	2706.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:98,113:0.54:211
chr10	127530325	rs3208565	T	C	4639.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:145,214:0.60:359
chr10	127548587	rs1539315	C	G	1763.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr10	127584978	rs5006357	A	G	5039.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.654;ClippingRankSum=0.000;DB;DP=222;ExcessHet=3.0103;FS=7.388;MLEAC=1;MLEAF=0.500;MQ=56.06;MQRankSum=-5.807;QD=22.80;ReadPosRankSum=1.532;SOR=1.234;set=HC	GT:AD:AF:DP	0/1:67,154:0.70:221
chr10	127584983	rs77434588	T	C	1030.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.398;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.85;MQRankSum=-1.432;QD=4.39;ReadPosRankSum=1.297;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:174,61:0.26:235
chr10	127585015	rs79042596	G	T	4257.77	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:184,117:0.39:301
chr10	127585035	rs113524015	C	G	4152.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.278;ClippingRankSum=0.000;DB;DP=468;ExcessHet=3.0103;FS=0.603;MLEAC=1;MLEAF=0.500;MQ=54.93;MQRankSum=-9.024;QD=8.97;ReadPosRankSum=4.034;SOR=0.785;set=HC	GT:AD:AF:DP	0/1:332,131:0.28:463
chr10	127585040	rs5006358	G	A	8792.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.498;ClippingRankSum=0.000;DB;DP=484;ExcessHet=3.0103;FS=3.276;MLEAC=1;MLEAF=0.500;MQ=54.90;MQRankSum=-15.005;QD=18.36;ReadPosRankSum=3.252;SOR=0.952;set=HC	GT:AD:AF:DP	0/1:248,231:0.48:479
chr10	127585090	rs74635147	C	A	9027.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.055;ClippingRankSum=0.000;DB;DP=698;ExcessHet=3.0103;FS=3.414;MLEAC=1;MLEAF=0.500;MQ=55.74;MQRankSum=-23.413;QD=12.95;ReadPosRankSum=-1.220;SOR=0.971;set=HC	GT:AD:AF:DP	0/1:446,251:0.36:697
chr10	127585097	rs78188902	T	C	9210.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.507;ClippingRankSum=0.000;DB;DP=715;ExcessHet=3.0103;FS=2.607;MLEAC=1;MLEAF=0.500;MQ=55.84;MQRankSum=-24.269;QD=12.90;ReadPosRankSum=-0.996;SOR=0.912;set=HC	GT:AD:AF:DP	0/1:467,247:0.35:714
chr10	127585099	rs79920605	A	G	9039.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.467;ClippingRankSum=0.000;DB;DP=715;ExcessHet=3.0103;FS=1.855;MLEAC=1;MLEAF=0.500;MQ=55.88;MQRankSum=-24.365;QD=12.64;ReadPosRankSum=-0.787;SOR=0.896;set=HC	GT:AD:AF:DP	0/1:469,246:0.34:715
chr10	127585112	rs72832617	T	C	8390.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.112;ClippingRankSum=0.000;DB;DP=700;ExcessHet=3.0103;FS=1.176;MLEAC=1;MLEAF=0.500;MQ=55.96;MQRankSum=-24.301;QD=12.00;ReadPosRankSum=2.571;SOR=0.823;set=HC	GT:AD:AF:DP	0/1:468,231:0.33:699
chr10	127585120	rs80288044	G	C	8002.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.514;ClippingRankSum=0.000;DB;DP=690;ExcessHet=3.0103;FS=0.551;MLEAC=1;MLEAF=0.500;MQ=56.19;MQRankSum=-23.488;QD=11.62;ReadPosRankSum=4.271;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:461,228:0.33:689
chr10	127585150	rs74162870	C	A	4865.77	.	AC=1;AF=0.500;AN=2;DB;DP=645;set=Intersection	GT:AD:AF:DP	0/1:388,255:0.40:643
chr10	127585179	rs74162871	G	C	5096.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.438;ClippingRankSum=0.000;DB;DP=565;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.500;MQ=56.90;MQRankSum=-15.528;QD=9.05;ReadPosRankSum=-0.014;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:301,262:0.47:563
chr10	127585237	rs5013589	C	T	449.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.650;ClippingRankSum=0.000;DB;DP=332;ExcessHet=3.0103;FS=11.246;MLEAC=1;MLEAF=0.500;MQ=59.03;MQRankSum=-3.215;QD=1.37;ReadPosRankSum=0.087;SOR=1.936;set=HC	GT:AD:AF:DP	0/1:295,33:0.10:328
chr10	127585240	rs5013161	G	A	334.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.553;ClippingRankSum=0.000;DB;DP=320;ExcessHet=3.0103;FS=0.898;MLEAC=1;MLEAF=0.500;MQ=59.21;MQRankSum=-3.550;QD=1.06;ReadPosRankSum=1.602;SOR=0.484;set=HC	GT:AD:AF:DP	0/1:286,30:0.09:316
chr10	127585260	rs4986789	G	T	896.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.085;ClippingRankSum=0.000;DB;DP=242;ExcessHet=3.0103;FS=3.695;MLEAC=1;MLEAF=0.500;MQ=59.41;MQRankSum=-7.290;QD=4.25;ReadPosRankSum=3.375;SOR=1.149;set=HC	GT:AD:AF:DP	0/1:174,37:0.18:211
chr10	127585263	rs5013162	C	T	583.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.624;ClippingRankSum=0.000;DB;DP=231;ExcessHet=3.0103;FS=8.333;MLEAC=1;MLEAF=0.500;MQ=59.38;MQRankSum=-3.711;QD=2.56;ReadPosRankSum=1.181;SOR=0.169;set=HC	GT:AD:AF:DP	0/1:198,30:0.13:228
chr10	127585273	rs5013163	G	A	503.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.125;ClippingRankSum=0.000;DB;DP=208;ExcessHet=3.0103;FS=4.819;MLEAC=1;MLEAF=0.500;MQ=59.47;MQRankSum=-2.913;QD=2.45;ReadPosRankSum=2.533;SOR=0.206;set=HC	GT:AD:AF:DP	0/1:180,26:0.13:206
chr10	127585288	rs5013590	C	A	1126.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:139,38:0.21:177
chr10	127585307	rs74579856	C	T	717.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.308;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=6.967;MLEAC=1;MLEAF=0.500;MQ=58.99;MQRankSum=1.836;QD=5.32;ReadPosRankSum=-3.832;SOR=2.133;set=HC	GT:AD:AF:DP	0/1:106,29:0.21:135
chr10	127585316	rs113284764	G	T	611.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.423;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=2.205;MLEAC=1;MLEAF=0.500;MQ=58.89;MQRankSum=1.493;QD=4.97;ReadPosRankSum=-2.499;SOR=1.473;set=HC	GT:AD:AF:DP	0/1:102,21:0.17:123
chr10	127585360	rs78190003	C	A	483.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.996;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=4.472;MLEAC=1;MLEAF=0.500;MQ=57.78;MQRankSum=0.073;QD=11.52;ReadPosRankSum=-1.974;SOR=0.069;set=HC	GT:AD:AF:DP	0/1:27,15:0.36:42
chr10	127585363	rs74162872	G	A	434.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.535;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=4.649;MLEAC=1;MLEAF=0.500;MQ=57.34;MQRankSum=-0.045;QD=12.42;ReadPosRankSum=-2.376;SOR=0.061;set=HC	GT:AD:AF:DP	0/1:23,12:0.34:35
chr10	127685091	rs3736477	T	C	6139.77	.	AC=1;AF=0.500;AN=2;DB;DP=550;set=Intersection	GT:AD:AF:DP	0/1:250,288:0.54:538
chr10	127693432	rs2138283	C	T	4132.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr10	127697165	rs2292690	T	G	1354.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:24,60:0.71:84
chr10	127697954	rs1666	T	G	3807.77	.	AC=1;AF=0.500;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	0/1:206,186:0.47:392
chr10	127708091	rs2176099	AG	GT	1291.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;JOINED;set=Intersection	GT:AD:AF:DP	0/1:24,32:0.57:56
chr10	127708428	rs2138280	A	T	982.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:51,44:0.46:95
chr10	127708503	rs2292694	G	C	234.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:17,11:0.39:28
chr10	127724778	rs1044122	A	G	1066.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:36,48:0.57:84
chr10	127727752	rs11594171	G	A	1599.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:65,70:0.52:135
chr10	127727768	rs1278255	A	G	1827.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:83,88:0.51:171
chr10	127727808	rs1278256	A	G	3058.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:139,147:0.51:286
chr10	127728070	.	G	A	1909.77	.	AC=1;AF=0.500;AN=2;DP=199;set=Intersection	GT:AD:AF:DP	0/1:103,88:0.46:191
chr10	127730972	rs150225509	CTGTG	C	1013.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.254;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=2.511;QD=11.14;ReadPosRankSum=-1.385;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:61,30:0.33:91
chr10	127730991	rs45535336	A	G	570.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;MQ=60.13;set=Intersection	GT:AD:AF:DP	0/1:54,26:0.33:80
chr10	127731012	rs11244780	T	A	391.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:27,19:0.41:46
chr10	127731535	rs7911793	TG	CA	690.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;JOINED;set=Intersection	GT:AD:AF:DP	0/1:40,20:0.33:60
chr10	127731803	rs112022474	GC	G	1057.73	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:34,45:0.57:79
chr10	127731846	rs10901522	G	A	694.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:22,27:0.55:49
chr10	127734513	rs1710313	A	C	1766.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:84,84:0.50:168
chr10	127734716	rs11244787	A	G	4989.77	.	AC=1;AF=0.500;AN=2;DB;DP=504;set=Intersection	GT:AD:AF:DP	0/1:254,238:0.48:492
chr10	127734834	rs11244788	C	T	2088.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.788;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=1.766;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.12;ReadPosRankSum=-1.720;SOR=0.502;set=HC	GT:AD:AF:DP	0/1:64,58:0.48:122
chr10	127734834	.	CGG	TGA	1983	.	AC=1;AF=0.500;AN=2;BRF=0.34;FR=0.5000;HP=2;HapScore=2;MGOF=10;MMLQ=28;MQ=60.0;NF=9;NR=39;PP=1983;QD=42.4264140596;SC=TCAGTTAATACGGATGGAGCA;SbPval=0.6;Source=Platypus;TC=112;TCF=22;TCR=90;TR=48;WE=127734844;WS=127734824;set=Platypus	GT:AD:AF:DP	0/1:64,48:0.43:112
chr10	127734836	rs11244789	G	A	2088.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.089;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.48;ReadPosRankSum=-1.300;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:61,52:0.46:113
chr10	127737930	rs2292692	G	A	6208.77	.	AC=1;AF=0.500;AN=2;DB;DP=607;set=Intersection	GT:AD:AF:DP	0/1:311,291:0.48:602
chr10	127738280	rs199857907	AT	A	559.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.914;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.27;ReadPosRankSum=1.217;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:77,54:0.41:131
chr10	127753359	rs56076315	T	C	1850.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr10	127786969	rs2290842	A	G	1863.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:125,93:0.43:218
chr10	127829012	rs1551678	C	G	553.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:17,22:0.56:39
chr10	127829043	rs71490760	G	A	669.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:35,29:0.45:64
chr10	127829304	rs17154306	G	A	342.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:15,14:0.48:29
chr10	127829322	rs12247230	T	C	417.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:11,15:0.58:26
chr10	127843641	rs1466358	T	C	1520.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.968;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=2.047;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.73;ReadPosRankSum=0.069;SOR=0.305;set=HC	GT:AD:AF:DP	0/1:31,39:0.56:70
chr10	127843646	rs56196479	C	T	1556.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.090;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=1.339;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.98;ReadPosRankSum=1.126;SOR=0.990;set=HC	GT:AD:AF:DP	0/1:40,42:0.51:82
chr10	127843740	rs1466359	G	T	4509.77	.	AC=1;AF=0.500;AN=2;DB;DP=453;set=Intersection	GT:AD:AF:DP	0/1:225,221:0.50:446
chr10	127843756	rs1466360	G	A	5433.77	.	AC=1;AF=0.500;AN=2;DB;DP=544;set=Intersection	GT:AD:AF:DP	0/1:275,262:0.49:537
chr10	127843921	rs1466361	T	C	3613.77	.	AC=1;AF=0.500;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	0/1:198,171:0.46:369
chr10	127843973	.	CT	C	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.469;ClippingRankSum=0.000;DP=165;ExcessHet=3.0103;FS=1.217;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=2.065;QD=0.31;ReadPosRankSum=-0.670;SOR=0.906;set=HC	GT:AD:AF:DP	0/1:92,22:0.19:114
chr10	128019025	rs3740199	C	G	6418.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr10	128191222	rs61863954	A	G	1767.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:96,89:0.48:185
chr10	128191368	rs10510159	T	C	1885.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:114,92:0.45:206
chr10	128202435	rs1436803	T	C	8307.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr10	128209769	rs2099552	T	C	1897.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr10	128209797	rs2099553	C	T	2353.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr10	128209959	rs4962342	G	T	2768.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr10	128335225	rs2842149	T	C	2587.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr10	128806888	rs9418761	G	C	1036.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:48,48:0.50:96
chr10	128810642	rs9418773	C	T	3090.77	.	AC=1;AF=0.500;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	0/1:259,166:0.39:425
chr10	128810669	rs9418691	C	T	2626.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:196,137:0.41:333
chr10	128810685	rs1890872	T	C	3716.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:112,162:0.59:274
chr10	128822842	rs9418706	G	A	419.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.107;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=1.665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.13;ReadPosRankSum=-0.300;SOR=0.278;set=HC	GT:AD:AF:DP	0/1:26,20:0.43:46
chr10	128830336	rs2275534	G	A	1257.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:39,53:0.58:92
chr10	128830592	rs9418802	C	T	642.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:38,30:0.44:68
chr10	128836214	rs7085407	G	C	969.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr10	128840842	rs880272	A	G	3026.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr10	128841570	rs882052	T	C	225.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:10,13:0.57:23
chr10	128850789	rs57319275	CAA	C	400.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.189;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.42;ReadPosRankSum=0.478;SOR=4.174;set=HC	GT:AD:AF:DP	0/1:8,15:0.65:23
chr10	128850841	rs9418817	T	C	2514.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr10	128859743	rs4751523	C	T	1335.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:32,54:0.63:86
chr10	128923954	rs1186355	A	C	7098.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr10	128925761	rs1153016	A	T	2126.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr10	128926013	rs1060561	A	G	6520.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr10	128952219	rs34225417	C	T	3699.77	.	AC=1;AF=0.500;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	0/1:232,189:0.45:421
chr10	128952265	rs7068954	A	G	7253.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr10	128974220	rs11594560	G	A	5572.77	.	AC=1;AF=0.500;AN=2;DB;DP=642;set=Intersection	GT:AD:AF:DP	0/1:355,279:0.44:634
chr10	128974716	.	A	C	2979.77	.	AC=1;AF=0.500;AN=2;DP=323;set=Intersection	GT:AD:AF:DP	0/1:178,140:0.44:318
chr10	129046407	rs3740013	T	C	8034.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:2,312:0.99:314
chr10	129178415	rs142651905	T	C	600.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:35,27:0.44:62
chr10	129179739	rs1998864	T	G	1209.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:34,50:0.60:84
chr10	129183002	rs878563	C	T	736.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:30,30:0.50:60
chr10	129183015	rs878562	T	G	2837.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr10	129200964	rs11017876	G	A	14595.77	.	AC=2;AF=1.00;AN=2;DB;DP=564;set=Intersection	GT:AD:AF:DP	1/1:3,547:0.99:550
chr10	129202729	rs2296630	G	T	3876.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr10	129207429	rs2229599	C	T	5254.77	.	AC=1;AF=0.500;AN=2;DB;DP=509;set=Intersection	GT:AD:AF:DP	0/1:249,255:0.51:504
chr10	129208894	rs6482874	A	G	624.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:29,30:0.51:59
chr10	129208954	rs11017943	T	G	1870.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:74,89:0.55:163
chr10	129208972	rs45488799	C	G	2219.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:119,103:0.46:222
chr10	129209084	rs2296628	A	G	4240.77	.	AC=1;AF=0.500;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	0/1:175,195:0.53:370
chr10	129213631	rs3736939	A	G	3637.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr10	129242343	rs145208679	A	T	4244.77	.	AC=1;AF=0.500;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	0/1:207,198:0.49:405
chr10	129245628	rs869800	G	A	1939.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:105,97:0.48:202
chr10	129245684	rs869801	G	A	3529.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:190,167:0.47:357
chr10	129249662	rs2229603	G	A	10750.77	.	AC=2;AF=1.00;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	1/1:0,392:1.00:392
chr10	129249676	rs2229604	C	T	12134.77	.	AC=2;AF=1.00;AN=2;DB;DP=451;set=Intersection	GT:AD:AF:DP	1/1:3,446:0.99:449
chr10	129249693	rs2229605	G	A	13267.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.977;ClippingRankSum=0.000;DB;DP=504;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.38;ReadPosRankSum=-0.740;SOR=0.548;set=HC	GT:AD:AF:DP	1/1:3,500:0.99:503
chr10	129249701	rs2229606	C	G	22867.77	.	AC=2;AF=1.00;AN=2;DB;DP=529;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.31;SOR=0.956;set=HC	GT:AD:AF:DP	1/1:0,528:1.00:528
chr10	129249914	rs3824814	T	C	3970.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr10	129249925	rs10765104	T	C	3255.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr10	129350641	rs4080381	C	A	885.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:37,34:0.48:71
chr10	129350856	rs4751440	G	C	4831.77	.	AC=1;AF=0.500;AN=2;DB;DP=545;set=Intersection	GT:AD:AF:DP	0/1:295,239:0.45:534
chr10	129534478	rs147236104	A	AGCGCGGC	1234.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;MQ=60.42;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr10	129534679	rs4751501	T	C	7009.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr10	129534739	rs4751502	C	G	9851.77	.	AC=2;AF=1.00;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	1/1:2,377:0.99:379
chr10	129534864	rs4751503	A	C	20114.77	.	AC=2;AF=1.00;AN=2;DB;DP=750;set=Intersection	GT:AD:AF:DP	1/1:0,739:1.00:739
chr10	129536642	rs7085541	G	A	2463.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.49;SOR=3.872;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr10	129536648	rs7085544	G	T	2500.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.12;SOR=4.066;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr10	129763379	rs373247519	C	G	1511.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:110,72:0.40:182
chr10	129834422	rs10764738	C	T	439.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:9,19:0.68:28
chr10	129845547	rs4262642	A	C	2125.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr10	129845903	rs7912703	C	T	2099.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:132,100:0.43:232
chr10	129846010	rs7911904	G	A	11460.77	.	AC=2;AF=1.00;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	1/1:2,429:1.00:431
chr10	129854369	rs4424589	T	C	7190.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr10	129854507	rs41282862	C	T	2134.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:107,103:0.49:210
chr10	129854550	rs11016041	G	A	1532.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:56,71:0.56:127
chr10	129859061	rs28411949	T	C	5183.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.08;SOR=3.442;set=HC	GT:AD:AF:DP	1/1:0,115:1.00:115
chr10	129859065	rs11016046	T	C	5217.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.22;SOR=3.500;set=HC	GT:AD:AF:DP	1/1:0,118:1.00:118
chr10	129859992	rs4462251	T	C	1691.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:91,86:0.49:177
chr10	129861497	rs56204987	G	A	1146.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:40,48:0.55:88
chr10	129864515	rs10764743	C	T	2479.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:155,117:0.43:272
chr10	129870510	rs41282874	A	G	5941.77	.	AC=1;AF=0.500;AN=2;DB;DP=684;set=Intersection	GT:AD:AF:DP	0/1:368,309:0.46:677
chr10	129871690	rs2275803	A	G	2189.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:85,102:0.55:187
chr10	129871748	rs78196136	G	A	1308.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:37,42:0.53:79
chr10	129871766	rs3216057	A	AG	975.73	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:29,26:0.47:55
chr10	129899482	rs41282876	T	A	470.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:17,19:0.53:36
chr10	129899578	rs8473	T	C	1944.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:107,90:0.46:197
chr10	129899629	rs16912247	G	A	3046.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:143,139:0.49:282
chr10	129902281	rs1063535	G	A	4160.77	.	AC=1;AF=0.500;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	0/1:225,189:0.46:414
chr10	129903016	rs7071768	T	C	9594.77	.	AC=1;AF=0.500;AN=2;DB;DP=894;set=Intersection	GT:AD:AF:DP	0/1:443,441:0.50:884
chr10	129904560	rs2853346	C	T	4029.77	.	AC=1;AF=0.500;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	0/1:191,179:0.48:370
chr10	129905239	rs2782871	G	A	5667.77	.	AC=1;AF=0.500;AN=2;DB;DP=586;set=Intersection	GT:AD:AF:DP	0/1:315,264:0.46:579
chr10	129906427	rs41306015	C	A	2603.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:173,126:0.42:299
chr10	129906674	rs41300566	T	C	4110.77	.	AC=1;AF=0.500;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	0/1:213,183:0.46:396
chr10	129907489	rs2853344	G	A	8111.77	.	AC=1;AF=0.500;AN=2;DB;DP=778;set=Intersection	GT:AD:AF:DP	0/1:385,383:0.50:768
chr10	129907741	rs2065718	G	A	986.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:49,43:0.47:92
chr10	129913960	rs7095325	A	T	4249.77	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:172,187:0.52:359
chr10	129917560	rs2071498	T	C	1964.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:75,91:0.55:166
chr10	129917670	rs41282878	A	G	740.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:81,43:0.35:124
chr10	131265545	rs16906252	C	T	6507.77	.	AC=1;AF=0.500;AN=2;DB;DP=590;set=Intersection	GT:AD:AF:DP	0/1:272,314:0.54:586
chr10	131265665	rs16906255	T	G	4672.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:5,176:0.97:181
chr10	131334789	rs10734087	T	C	1454.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr10	131639306	rs10674137	T	TCCC	134.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.133;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.35;ReadPosRankSum=0.899;SOR=0.340;set=HC	GT:AD:AF:DP	0/1:24,7:0.23:31
chr10	131641361	rs35210769	T	TG	1860.73	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:69,78:0.53:147
chr10	131665885	rs12572694	G	A	768.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:21,31:0.60:52
chr10	131755652	rs36101167	A	AT	2221.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.031;ClippingRankSum=0.000;DB;DP=366;ExcessHet=3.0103;FS=1.106;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=0.960;QD=7.71;ReadPosRankSum=-1.159;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:124,164:0.57:288
chr10	131760352	rs573370	A	G	4998.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:4,192:0.98:196
chr10	131904809	rs1177699	C	T	4024.77	.	AC=1;AF=0.500;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	0/1:224,194:0.46:418
chr10	131934552	rs2274221	T	C	468.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr10	131934596	rs9663190	G	C	325.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr10	131934628	rs2274220	T	C	279.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr10	131943384	rs7095590	T	C	613.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr10	131943423	rs7073590	G	T	985.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr10	131943719	rs7922450	T	G	581.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr10	131958210	rs1570795	G	C	2845.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:4,110:0.96:114
chr10	131959150	rs2274217	C	T	4688.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr10	131967693	rs17297984	T	A	6324.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr10	132902550	.	A	T	3560.77	.	AC=1;AF=0.500;AN=2;DP=380;set=Intersection	GT:AD:AF:DP	0/1:196,175:0.47:371
chr10	132915050	rs2298192	G	A	4344.77	.	AC=1;AF=0.500;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	0/1:154,205:0.57:359
chr10	132915202	rs2298193	A	G	11492.77	.	AC=2;AF=1.00;AN=2;DB;DP=439;set=Intersection	GT:AD:AF:DP	1/1:0,429:1.00:429
chr10	132961555	rs11416735	C	CA	1081.73	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:56,49:0.47:105
chr10	133109602	rs148913526	G	A	507.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:27,27:0.50:54
chr10	133607892	rs4897739	T	C	537.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr10	133607904	rs4897781	G	A	675.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr10	133607937	rs4897782	G	A	2191.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.66;SOR=2.208;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr10	133607947	rs4897740	T	G	2392.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.73;SOR=2.221;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr10	133608210	rs4897741	A	G	8930.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:0,334:1.00:334
chr10	133608237	rs4897783	G	A	8547.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr10	133608291	rs4897742	TT	GG	11396.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr10	133608495	rs4897744	A	T	3149.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr10	133786586	rs1050704	T	C	3585.77	.	AC=1;AF=0.500;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	0/1:249,183:0.42:432
chr10	133918372	rs10870252	G	A	3796.77	.	AC=1;AF=0.500;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	0/1:186,191:0.51:377
chr10	133918466	rs10870253	T	C	2541.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:165,122:0.43:287
chr10	133918567	rs12098286	A	G	834.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:34,36:0.51:70
chr10	133948439	rs11146206	C	T	798.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:45,39:0.46:84
chr10	133948456	rs2637643	C	T	1119.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:56,54:0.49:110
chr10	133948634	rs2814182	T	C	1057.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:44,53:0.55:97
chr10	133948689	rs2637644	C	T	369.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:22,20:0.48:42
chr10	133951501	rs57086821	CA	C	1426.73	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:69,50:0.42:119
chr10	133954003	.	G	A	374.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.447;ClippingRankSum=0.000;DP=349;ExcessHet=3.0103;FS=1.195;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.10;ReadPosRankSum=-0.681;SOR=0.823;set=HC	GT:AD:AF:DP	0/1:290,50:0.15:340
chr10	133954011	rs2818387	C	T	4008.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.272;ClippingRankSum=0.000;DB;DP=323;ExcessHet=3.0103;FS=1.338;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.73;ReadPosRankSum=1.101;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:156,159:0.50:315
chr10	133954111	rs9733324	G	C	678.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:40,34:0.46:74
chr10	133955427	rs11592585	A	G	5659.77	.	AC=1;AF=0.500;AN=2;DB;DP=555;set=Intersection	GT:AD:AF:DP	0/1:270,277:0.51:547
chr10	133955569	rs5789117	C	CCG	7842.73	.	AC=2;AF=1.00;AN=2;DB;DP=236;MQ=60.05;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr10	133958541	rs2637627	C	T	3273.77	.	AC=1;AF=0.500;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	0/1:182,158:0.46:340
chr10	133963042	rs112941338	GC	G	3759.73	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:110,119:0.52:229
chr10	133963058	.	T	TCCCCCGCCCCACCCCCTCCCTG	3332.73	.	AC=1;AF=0.500;AN=2;DP=184;set=Intersection	GT:AD:AF:DP	0/1:77,95:0.55:172
chr10	133963466	rs9419380	A	G	1461.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:78,66:0.46:144
chr10	133967539	rs7082416	C	G	3212.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;MQ=60.05;set=Intersection	GT:AD:AF:DP	0/1:111,96:0.46:207
chr10	133967555	rs77155409	G	C	2674.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:92,69:0.43:161
chr10	133967584	rs138366344	C	CCAG	1194.73	.	AC=1;AF=0.500;AN=2;DB;DP=96;MQ=60.11;set=Intersection	GT:AD:AF:DP	0/1:60,34:0.36:94
chr10	133967593	rs7906747	C	T	1149.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:51,31:0.38:82
chr10	133978080	rs77822814	G	A	2601.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:93,122:0.57:215
chr10	133981422	rs2637650	C	T	4263.77	.	AC=1;AF=0.500;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	0/1:170,204:0.55:374
chr10	134000501	.	CCCCG	C	1836.73	.	AC=1;AF=0.500;AN=2;DP=150;set=Intersection	GT:AD:AF:DP	0/1:47,48:0.51:95
chr10	134010224	rs1552681	C	G	592.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:38,29:0.43:67
chr10	134010435	rs78726081	AG	A	9135.73	.	AC=1;AF=0.500;AN=2;DB;DP=559;MQ=60.06;set=Intersection	GT:AD:AF:DP	0/1:255,289:0.53:544
chr10	134013906	rs56326856	C	T	9134.77	.	AC=1;AF=0.500;AN=2;DB;DP=956;set=Intersection	GT:AD:AF:DP	0/1:499,453:0.48:952
chr10	134013990	rs2247705	G	A	11392.77	.	AC=1;AF=0.500;AN=2;DB;DP=1108;set=Intersection	GT:AD:AF:DP	0/1:552,551:0.50:1103
chr10	134014661	rs76037184	G	T	438.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:31,20:0.39:51
chr10	134017295	rs12313	A	G	2327.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:114,107:0.48:221
chr10	134018447	rs146929318	G	GGCC	4994.73	.	AC=1;AF=0.500;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	0/1:228,137:0.38:365
chr10	134018483	rs114235518	G	A	1913.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:147,84:0.36:231
chr10	134021506	rs79220014	G	A	849.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:30,38:0.56:68
chr10	134021740	rs923659	G	A	1120.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:33,52:0.61:85
chr10	134021810	rs923660	T	C	480.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:10,18:0.64:28
chr10	134022455	rs41306840	G	A	2303.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:108,112:0.51:220
chr10	134036053	rs2814197	G	A	806.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.519;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.61;ReadPosRankSum=-1.346;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:42,22:0.34:64
chr10	134036057	rs2637635	C	T	794.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.116;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=3.853;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.04;ReadPosRankSum=-0.981;SOR=1.572;set=HC	GT:AD:AF:DP	0/1:48,24:0.33:72
chr10	134036073	rs2814196	G	A	738.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:73,35:0.32:108
chr10	134036193	rs2818401	A	G	3850.77	.	AC=1;AF=0.500;AN=2;DB;DP=486;set=Intersection	GT:AD:AF:DP	0/1:282,199:0.41:481
chr10	134036596	rs1994688	G	C	217.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:9,9:0.50:18
chr10	134038715	rs902629	A	G	4733.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr10	134039132	rs2130893	G	C	8288.77	.	AC=1;AF=0.500;AN=2;DB;DP=869;set=Intersection	GT:AD:AF:DP	0/1:444,415:0.48:859
chr10	134039242	rs2130894	C	T	4942.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.214;ClippingRankSum=0.000;DB;DP=441;ExcessHet=3.0103;FS=0.530;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.34;ReadPosRankSum=0.642;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:212,224:0.51:436
chr10	134040290	rs2306982	C	A	6591.77	.	AC=1;AF=0.500;AN=2;DB;DP=585;set=Intersection	GT:AD:AF:DP	0/1:269,311:0.54:580
chr10	134059616	rs3814609	G	A	1109.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:31,44:0.59:75
chr10	134062574	rs4880361	G	A	1756.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:94,85:0.47:179
chr10	134137627	rs7914257	T	C	1125.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:44,47:0.52:91
chr10	134143942	rs1052281	C	T	5556.77	.	AC=1;AF=0.500;AN=2;DB;DP=596;set=Intersection	GT:AD:AF:DP	0/1:315,278:0.47:593
chr10	134143985	rs1132165	GC	TT	9792.77	.	AC=1;AF=0.500;AN=2;DB;DP=563;JOINED;set=Intersection	GT:AD:AF:DP	0/1:303,257:0.46:560
chr10	134144005	rs7085852	T	C	4832.77	.	AC=1;AF=0.500;AN=2;DB;DP=490;set=Intersection	GT:AD:AF:DP	0/1:264,224:0.46:488
chr10	134144016	rs117392241	C	T	4509.77	.	AC=1;AF=0.500;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	0/1:197,214:0.52:411
chr10	134145136	rs7086691	A	G	7402.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.618;ClippingRankSum=0.000;DB;DP=417;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.97;ReadPosRankSum=-0.044;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:220,192:0.47:412
chr10	134145136	.	ACC	GCG	2944	.	AC=1;AF=0.500;AN=2;BRF=0.42;FR=0.5000;HP=2;HapScore=2;MGOF=8;MMLQ=24;MQ=60.0;NF=74;NR=68;PP=2944;QD=20;SC=GGCAGCGAGGACCGCTCCAAA;SbPval=0.42;Source=Platypus;TC=305;TCF=151;TCR=154;TR=142;WE=134145146;WS=134145126;set=Platypus	GT:AD:AF:DP	0/1:163,142:0.47:305
chr10	134145138	rs7080014	C	G	7402.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.239;ClippingRankSum=0.000;DB;DP=422;ExcessHet=3.0103;FS=1.093;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.75;ReadPosRankSum=0.262;SOR=0.771;set=HC	GT:AD:AF:DP	0/1:225,192:0.46:417
chr10	134145166	rs13882	T	C	4897.77	.	AC=1;AF=0.500;AN=2;DB;DP=465;set=Intersection	GT:AD:AF:DP	0/1:227,225:0.50:452
chr10	134145293	rs12784130	G	T	4775.77	.	AC=1;AF=0.500;AN=2;DB;DP=459;MQ=60.02;set=Intersection	GT:AD:AF:DP	0/1:217,236:0.52:453
chr10	134145336	rs12784321	G	T	3177.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:135,153:0.53:288
chr10	134145420	rs56274613	AC	A	1044.73	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:30,31:0.51:61
chr10	134145440	rs55712186	A	C	916.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:25,22:0.47:47
chr10	134145441	rs71013522	C	CT	880.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:25,21:0.46:46
chr10	134147341	rs12416634	T	A	50.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:12,4:0.25:16
chr10	134150217	rs114468923	A	G	1873.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:72,89:0.55:161
chr10	134151034	rs2259594	A	G	1969.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:98,86:0.47:184
chr10	134151288	rs2259600	A	G	673.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:38,27:0.42:65
chr10	134161633	rs2474328	A	G	3513.77	.	AC=1;AF=0.500;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	0/1:223,171:0.43:394
chr10	134165291	rs2261222	C	G	2387.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:72,94:0.57:166
chr10	134166273	rs72479351	A	G	2578.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:104,114:0.52:218
chr10	134180248	rs10870299	C	T	1009.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:54,41:0.43:95
chr10	134219036	rs11817589	G	A	8583.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.151;ClippingRankSum=0.000;DB;DP=863;ExcessHet=3.0103;FS=1.100;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.13;ReadPosRankSum=1.772;SOR=0.630;set=HC	GT:AD:AF:DP	0/1:431,416:0.49:847
chr10	134219045	rs11146364	C	T	15176.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.969;ClippingRankSum=0.000;DB;DP=822;ExcessHet=3.0103;FS=1.100;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.85;ReadPosRankSum=1.445;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:406,399:0.50:805
chr10	134237240	rs1881746	T	C	4804.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr10	134237249	rs150298334	C	CTGTG	5468.73	.	AC=2;AF=1.00;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.17;QD=44.46;SOR=1.350;set=HC	GT:AD:AF:DP	1/1:0,123:1.00:123
chr10	134237274	.	T	G	2508.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.968;ClippingRankSum=0.000;DP=199;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=-1.132;QD=12.80;ReadPosRankSum=0.826;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:85,111:0.57:196
chr10	134237276	rs1574449	T	G	8378.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.05;QD=40.28;SOR=0.973;set=HC	GT:AD:AF:DP	1/1:0,208:1.00:208
chr10	134237425	rs1574448	A	G	6437.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr10	134239228	rs12775406	T	C	6975.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:4,272:0.99:276
chr10	134459388	rs1133400	A	G	2439.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:117,118:0.50:235
chr10	134521802	rs41301113	G	C	3794.77	.	AC=1;AF=0.500;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	0/1:152,179:0.54:331
chr10	134598628	rs2804003	A	G	7348.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr10	134622408	rs2767434	T	C	2935.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:108,135:0.56:243
chr10	134622507	rs2767431	A	G	664.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:15,24:0.62:39
chr10	134623959	rs2254419	T	C	5594.77	.	AC=1;AF=0.500;AN=2;DB;DP=550;set=Intersection	GT:AD:AF:DP	0/1:266,279:0.51:545
chr10	134624225	rs12416624	G	A	3505.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.639;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.01;ReadPosRankSum=0.925;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:58,88:0.60:146
chr10	134624232	rs12416631	G	C	3516.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.882;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.42;ReadPosRankSum=1.506;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:56,88:0.61:144
chr10	134626453	rs3750586	C	T	1946.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:68,80:0.54:148
chr10	134627593	rs11146529	G	A	1248.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:46,56:0.55:102
chr10	134627882	rs7070307	G	T	732.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:29,29:0.50:58
chr10	134646539	rs4880431	C	T	565.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:30,26:0.46:56
chr10	134646988	rs4880433	C	T	2376.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:115,111:0.49:226
chr10	134647453	rs3750583	C	T	1403.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr10	134647771	rs3793690	G	T	614.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:25,27:0.52:52
chr10	134648048	rs3793688	C	T	2421.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:121,115:0.49:236
chr10	134650440	rs3750580	T	C	1984.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:126,98:0.44:224
chr10	134659626	rs10870341	A	G	1587.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:67,79:0.54:146
chr10	134659766	rs12260141	G	C	1340.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:70,63:0.47:133
chr10	134660951	rs2892211	A	C	1249.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:42,58:0.58:100
chr10	134664875	rs7913626	A	G	7809.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr10	134672798	rs2001324	G	T	1475.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:78,62:0.44:140
chr10	134681093	rs4880454	C	T	2446.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:121,121:0.50:242
chr10	134682701	rs12785166	C	T	412.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:9,16:0.64:25
chr10	134682855	rs7908950	C	T	2379.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:117,119:0.50:236
chr10	134699301	rs45547444	A	T	1660.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:85,80:0.48:165
chr10	134706077	rs7076681	C	T	2959.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:133,133:0.50:266
chr10	134722022	rs7075277	A	G	3658.77	.	AC=1;AF=0.500;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	0/1:222,185:0.45:407
chr10	134723390	rs10870353	A	G	1206.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.909;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=7.773;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.17;ReadPosRankSum=-2.077;SOR=2.514;set=HC	GT:AD:AF:DP	0/1:26,31:0.54:57
chr10	134723394	rs11146582	A	G	1304.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.949;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=6.485;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.39;ReadPosRankSum=-2.504;SOR=2.252;set=HC	GT:AD:AF:DP	0/1:28,36:0.56:64
chr10	134726108	rs72401137	CCTCTCTCTCT	C	1831.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.355;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=0.788;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.98;ReadPosRankSum=1.849;SOR=0.808;set=HC	GT:AD:AF:DP	0/1:71,60:0.46:131
chr10	134726335	rs12254100	T	C	1116.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:83,57:0.41:140
chr10	134726369	rs56300950	T	A	748.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:43,34:0.44:77
chr10	134726621	rs4880467	G	C	4163.77	.	AC=1;AF=0.500;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	0/1:180,189:0.51:369
chr10	134726841	rs61863089	G	T	2031.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:110,91:0.45:201
chr10	134733109	rs34347971	A	G	466.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:22,20:0.48:42
chr10	134733131	rs35970466	T	C	275.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:13,13:0.50:26
chr10	134735672	rs7915371	A	G	2746.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:139,137:0.50:276
chr10	134736026	rs4880286	G	A	1176.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:63,54:0.46:117
chr10	134736052	rs4880287	G	T	1220.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:77,59:0.43:136
chr10	134736076	rs4880288	T	G	1260.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:95,61:0.39:156
chr10	134738232	rs4075501	A	G	1701.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:152,96:0.39:248
chr10	134740393	rs4295969	C	T	2170.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:106,99:0.48:205
chr10	134740618	rs7071677	G	C	4246.77	.	AC=1;AF=0.500;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	0/1:210,203:0.49:413
chr10	134741099	rs11146048	A	G	808.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:42,33:0.44:75
chr10	134748331	rs12781609	C	T	1629.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:101,84:0.45:185
chr10	134750604	rs10870211	C	A	1841.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr10	134752007	rs60993054	TC	T	1035.73	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:37,44:0.54:81
chr10	134755298	rs4880292	C	G	1893.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:123,90:0.42:213
chr10	134755852	rs56100128	T	C	133.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.543;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.05;ReadPosRankSum=1.225;SOR=0.457;set=HC	GT:AD:AF:DP	0/1:28,5:0.15:33
chr10	134755860	.	T	TCCGGGGCCTCCCCGGGGCGGGGATCGTGGCGGGTC	642.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.937;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.07;ReadPosRankSum=-1.721;SOR=0.416;set=HC	GT:AD:AF:DP	0/1:32,8:0.20:40
chr10	134756013	rs7898115	T	C	1860.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:114,96:0.46:210
chr10	134884516	rs4271312	G	A	6751.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr10	134884546	rs4576736	A	G	6646.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr10	134884595	rs4271313	G	A	7078.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr10	134884610	rs4486541	C	G	7093.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr10	134884755	rs11101751	C	A	4141.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr10	134885677	rs7069085	A	C	2152.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr10	134885700	rs7094939	T	C	1411.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr10	134886618	rs4838684	G	C	8383.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr10	134894004	rs144784996	C	T	1135.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:41,51:0.55:92
chr10	134895530	rs34883766	C	T	1846.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr10	134898594	rs4838694	A	G	3057.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr10	134902314	rs10745302	A	G	1514.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr10	134902396	rs10776692	C	G	7753.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.82;SOR=1.352;set=HC	GT:AD:AF:DP	1/1:0,173:1.00:173
chr10	134902396	.	CGC	GGT	2206	.	AC=2;AF=1.00;AN=2;BRF=0.35;FR=1.0000;HP=1;HapScore=1;MGOF=7;MMLQ=21;MQ=60.0;NF=83;NR=45;PP=2206;QD=17.6520927724;SC=CTCACGCTTCCGCAACTTTGC;SbPval=0.54;Source=Platypus;TC=138;TCF=89;TCR=49;TR=128;WE=134902406;WS=134902386;set=Platypus	GT:AD:AF:DP	1/1:10,128:0.93:138
chr10	134902398	rs10776693	C	T	7753.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.31;SOR=1.342;set=HC	GT:AD:AF:DP	1/1:0,175:1.00:175
chr10	134906343	.	G	GGGAGGGAAGGAAGGAA,GGGAGGGAAGGAAGGAAGGAAGGAAGGAA	1179.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=64.59;QD=69.40;SOR=5.136;set=HC	GT:AD:AF:DP	1/2:0,12,5:0.71,0.29:17
chr10	134910629	rs11101914	G	A	3632.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:153,174:0.53:327
chr10	134912314	rs11101916	G	A	4106.77	.	AC=1;AF=0.500;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	0/1:205,197:0.49:402
chr10	134915993	rs7905581	G	C	4353.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr10	134916121	rs7918862	T	A	3256.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr10	134942166	rs2806452	A	G	6599.77	.	AC=1;AF=0.500;AN=2;DB;DP=575;set=Intersection	GT:AD:AF:DP	0/1:250,311:0.55:561
chr10	134973995	rs71503783	G	A	3156.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:154,158:0.51:312
chr10	134974187	rs56406605	A	T	689.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:31,28:0.47:59
chr10	134981690	rs2998152	T	C	5559.77	.	AC=1;AF=0.500;AN=2;DB;DP=524;set=Intersection	GT:AD:AF:DP	0/1:248,260:0.51:508
chr10	134981837	rs2998151	T	C	7237.77	.	AC=1;AF=0.500;AN=2;DB;DP=737;set=Intersection	GT:AD:AF:DP	0/1:375,355:0.49:730
chr10	134981942	rs3008303	C	T	2181.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:115,98:0.46:213
chr10	134997480	rs57510763	C	T	6385.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr10	134997514	rs67800134	A	G	8570.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr10	134997524	rs138319019	T	TCTTG	8373.73	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr10	134999602	rs3008393	G	C	10902.77	.	AC=2;AF=1.00;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	1/1:0,395:1.00:395
chr10	135000148	rs3810965	T	C	28870.77	.	AC=2;AF=1.00;AN=2;DB;DP=679;set=Intersection	GT:AD:AF:DP	1/1:0,673:1.00:673
chr10	135000159	rs3810964	A	G	27503.77	.	AC=2;AF=1.00;AN=2;DB;DP=620;set=Intersection	GT:AD:AF:DP	1/1:0,615:1.00:615
chr10	135012162	rs2998139	T	C	6479.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr10	135012429	rs3008390	TT	AC	23610.77	.	AC=2;AF=1.00;AN=2;DB;DP=535;JOINED;set=Intersection	GT:AD:AF:DP	1/1:2,529:1.00:531
chr10	135012652	rs3008388	T	C	15680.77	.	AC=2;AF=1.00;AN=2;DB;DP=596;set=Intersection	GT:AD:AF:DP	1/1:0,591:1.00:591
chr10	135015427	rs9418941	C	A	10645.77	.	AC=2;AF=1.00;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	1/1:0,380:1.00:380
chr10	135015667	rs9419023	C	T	20933.77	.	AC=2;AF=1.00;AN=2;DB;DP=783;set=Intersection	GT:AD:AF:DP	1/1:5,772:0.99:777
chr10	135016089	rs3008386	T	C	18210.77	.	AC=2;AF=1.00;AN=2;DB;DP=673;set=Intersection	GT:AD:AF:DP	1/1:0,669:1.00:669
chr10	135016175	rs3008385	T	G	15854.77	.	AC=2;AF=1.00;AN=2;DB;DP=600;set=Intersection	GT:AD:AF:DP	1/1:0,594:1.00:594
chr10	135020315	rs3008375	T	C	8018.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:2,294:0.99:296
chr10	135038088	rs11597218	C	T	1648.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:77,78:0.50:155
chr10	135043802	rs7092433	C	A	253.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.07;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr10	135051562	rs2998143	A	G	855.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:72,47:0.39:119
chr10	135061112	rs12355840	C	T	7444.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr10	135076523	rs2995300	C	A	3279.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:1,116:0.99:117
chr10	135076596	rs2230576	T	C	8024.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr10	135076758	rs3008318	T	C	4047.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr10	135076903	rs3121298	A	G	156.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr10	135077121	rs3216041	C	CGTCAGCCCCGTGGGGAGGCCGTGCCACT	1840.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr10	135077311	rs2995301	C	G	11623.77	.	AC=2;AF=1.00;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	1/1:0,432:1.00:432
chr10	135081684	rs2995309	T	C	3265.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr10	135081754	rs11101672	G	C	1462.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr10	135082346	rs2275720	A	G	17266.77	.	AC=2;AF=1.00;AN=2;DB;DP=655;set=Intersection	GT:AD:AF:DP	1/1:0,648:1.00:648
chr10	135082810	rs2995310	C	T	5079.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr10	135082874	rs2995311	G	A	9650.77	.	AC=2;AF=1.00;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	1/1:0,368:1.00:368
chr10	135083164	rs2275719	C	T	1457.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr10	135083812	rs885023	C	A	3790.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr10	135084232	rs5789159	C	CAGA	7769.73	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:1,175:0.99:176
chr10	135084322	rs3008321	A	G	8712.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;MQ=60.03;set=Intersection	GT:AD:AF:DP	1/1:1,305:1.00:306
chr10	135084601	rs2995314	T	C	16172.77	.	AC=2;AF=1.00;AN=2;DB;DP=621;set=Intersection	GT:AD:AF:DP	1/1:0,618:1.00:618
chr10	135085321	rs1131720	C	T	11044.77	.	AC=2;AF=1.00;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	1/1:0,415:1.00:415
chr10	135085426	rs1131719	A	G	15903.77	.	AC=2;AF=1.00;AN=2;DB;DP=567;set=Intersection	GT:AD:AF:DP	1/1:0,563:1.00:563
chr10	135085754	rs1131718	G	A	19962.77	.	AC=2;AF=1.00;AN=2;DB;DP=748;set=Intersection	GT:AD:AF:DP	1/1:0,739:1.00:739
chr10	135086380	rs3008324	C	T	12009.77	.	AC=2;AF=1.00;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	1/1:0,455:1.00:455
chr10	135086766	rs45451297	G	A	1540.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:41,68:0.62:109
chr10	135087460	rs11101675	C	T	4737.77	.	AC=1;AF=0.500;AN=2;DB;DP=508;set=Intersection	GT:AD:AF:DP	0/1:269,236:0.47:505
chr10	135087521	rs3008326	G	A	13654.77	.	AC=2;AF=1.00;AN=2;DB;DP=515;set=Intersection	GT:AD:AF:DP	1/1:0,513:1.00:513
chr10	135089035	rs2275725	A	G	9676.77	.	AC=2;AF=1.00;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	1/1:1,360:1.00:361
chr10	135090183	rs2995317	A	G	4083.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr10	135096784	rs2995325	A	G	3799.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr10	135097224	rs56403249	T	G	1996.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr10	135097227	.	CG	TG	2115	.	AC=1;AF=0.500;AN=2;BRF=0.28;FR=0.5000,0.5000;HP=2;HapScore=2;MGOF=59;MMLQ=24;MQ=60.0;NF=18,4;NR=5,1;PP=2115,535;QD=93.1304347826;SC=CTGCCTCTCCCGCACTCCCTG;SbPval=0.56;Source=Platypus;TC=23;TCF=18;TCR=5;TR=23,5;WE=135097240;WS=135097220;set=Platypus	GT:AD:AF:DP	0/1:35,5:0.12:40
chr10	135097227	.	CGCA	C,CCA	2032.73	.	AC=2,0;AF=1.00,0.00;AN=2;DP=46;set=Intersection	GT:AF:DP	1/1:1.00:46
chr10	135097230	.	ACT	TCG	2130	.	AC=1;AF=0.500;AN=2;BRF=0.28;FR=0.5000;HP=2;HapScore=2;MGOF=59;MMLQ=24;MQ=60.0;NF=18;NR=4;PP=2130;QD=99.2485397665;SC=CCTCTCCCGCACTCCCTGCCT;SbPval=0.79;Source=Platypus;TC=41;TCF=31;TCR=10;TR=22;WE=135097240;WS=135097220;set=Platypus	GT:AD:AF:DP	1/0:19,22:0.54:41
chr10	135097232	.	T	TCG	2035.73	.	AC=2;AF=1.00;AN=2;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.26;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr10	135097434	rs2995326	A	G	7891.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr10	135098672	rs3008334	G	A	11763.77	.	AC=2;AF=1.00;AN=2;DB;DP=455;set=Intersection	GT:AD:AF:DP	1/1:0,448:1.00:448
chr10	135098830	rs3008335	T	C	19628.77	.	AC=2;AF=1.00;AN=2;DB;DP=694;set=Intersection	GT:AD:AF:DP	1/1:0,691:1.00:691
chr10	135098845	rs2995327	C	T	19785.77	.	AC=2;AF=1.00;AN=2;DB;DP=709;set=Intersection	GT:AD:AF:DP	1/1:0,705:1.00:705
chr10	135103311	rs141370078	C	CGCCCGCTGCGCCGCGGACGCCAAGTCCCT	4011.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr10	135105879	.	C	CT	161	.	AC=2;AF=1.00;AN=2;BRF=0.4;FR=1.0000;HP=4;HapScore=4;MGOF=337;MMLQ=23;MQ=40.7;NF=5;NR=0;PP=161;QD=36.4;SC=CTCCGTGTCCCCCGTGTCCCC;SbPval=1.0;Source=Platypus;TC=5;TCF=5;TCR=0;TR=5;WE=135105897;WS=135105874;set=Platypus	GT:AD:AF:DP	1/1:0,5:1.00:5
chr10	135105889	.	C	T	156	.	AC=1;AF=0.500;AN=2;BRF=0.4;FR=0.5000;HP=3;HapScore=4;MGOF=337;MMLQ=27;MQ=46.64;NF=8;NR=2;PP=156;QD=19.0771212547;SC=CCCGTGTCCCCGTGTCCCGGG;SbPval=0.84;Source=Platypus;TC=13;TCF=9;TCR=4;TR=10;WE=135105897;WS=135105874;set=Platypus	GT:AD:AF:DP	0/1:3,10:0.77:13
chr10	135105961	.	T	TC	2975	.	AC=1;AF=0.500;AN=2;BRF=0.57;FR=0.5000;HP=4;HapScore=4;MGOF=29;MMLQ=24;MQ=62.03;NF=39;NR=31;PP=2975;QD=20;SC=TCCCTCCGTGTCCCCGTGTCC;SbPval=0.49;Source=Platypus;TC=72;TCF=41;TCR=31;TR=70;WE=135105999;WS=135105951;set=Platypus	GT:AD:AF:DP	1/0:2,70:0.97:72
chr10	135105962	.	CCCCGTGTCCCTCCGTGT	C	2975	.	AC=1;AF=0.500;AN=2;BRF=0.57;FR=0.5000;HP=3;HapScore=4;MGOF=29;MMLQ=24;MQ=61.68;NF=35;NR=31;PP=2975;QD=20;SC=CCCTCCGTGTCCCCGTGTCCC;SbPval=0.35;Source=Platypus;TC=81;TCF=47;TCR=34;TR=66;WE=135105999;WS=135105951;set=Platypus	GT:AD:AF:DP	0/1:15,66:0.81:81
chr10	135105983	.	C	T	2962	.	AC=1;AF=0.500;AN=2;BRF=0.57;FR=0.5000;HP=3;HapScore=4;MGOF=29;MMLQ=26;MQ=61.05;NF=47;NR=18;PP=2962;QD=20;SC=TCCGTGTCCCCGTGTCCCGGG;SbPval=0.61;Source=Platypus;TC=124;TCF=88;TCR=36;TR=65;WE=135105999;WS=135105951;set=Platypus	GT:AD:AF:DP	1/0:59,65:0.52:124
chr10	135105991	.	G	A	2962	.	AC=1;AF=0.500;AN=2;BRF=0.57;FR=0.5000;HP=3;HapScore=4;MGOF=29;MMLQ=22;MQ=61.16;NF=44;NR=18;PP=2962;QD=20;SC=CCCGTGTCCCGGGGAGCCCTA;SbPval=0.56;Source=Platypus;TC=134;TCF=94;TCR=40;TR=62;WE=135105999;WS=135105951;set=Platypus	GT:AD:AF:DP	0/1:72,62:0.46:134
chr10	135141572	rs2298122	G	T	4945.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:1,178:0.99:179
chr10	135160950	rs4838721	C	T	15797.77	.	AC=2;AF=1.00;AN=2;DB;DP=600;set=Intersection	GT:AD:AF:DP	1/1:0,597:1.00:597
chr10	135161005	.	CAGCTGTGCTGCGCTCCAGGGGGCCT	C	4981.73	.	AC=1;AF=0.500;AN=2;DP=315;set=Intersection	GT:AD:AF:DP	0/1:154,133:0.46:287
chr10	135165790	rs4369319	A	G	15464.77	.	AC=2;AF=1.00;AN=2;DB;DP=586;set=Intersection	GT:AD:AF:DP	1/1:0,575:1.00:575
chr10	135171364	rs1891372	T	C	1350.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr10	135178087	rs10745294	A	C	6212.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr10	135179458	rs6537598	G	C	7998.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr10	135180430	rs2230261	A	G	7225.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr10	135184126	rs1049951	G	A	8516.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr10	135186806	rs10466126	A	G	3729.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:2,141:0.99:143
chr10	135192762	rs12250188	C	G	168.80	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.11;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr10	135194890	rs10745295	A	G	3436.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr10	135197419	rs4240520	G	A	4496.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr10	135202594	rs10776679	T	C	9049.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	1/1:0,346:1.00:346
chr10	135204799	rs6537600	C	T	6640.77	.	AC=1;AF=0.500;AN=2;DB;DP=589;set=Intersection	GT:AD:AF:DP	0/1:281,300:0.52:581
chr10	135204950	rs1046175	C	G	3489.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:164,161:0.50:325
chr10	135205009	rs1046178	C	G	2978.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:102,132:0.56:234
chr10	135207936	rs10160083	T	C	3679.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr10	135209105	rs4838742	A	G	962.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr10	135211892	rs2252852	A	G	6297.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr10	135213263	rs2814206	T	C	3352.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr10	135216123	.	G	A	1110.77	.	AC=1;AF=0.500;AN=2;DP=95;set=Intersection	GT:AD:AF:DP	0/1:45,50:0.53:95
chr10	135216331	rs150075790	T	TA	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.478;ClippingRankSum=0.000;DB;DP=336;ExcessHet=3.0103;FS=5.127;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=0.000;QD=0.14;ReadPosRankSum=1.146;SOR=1.140;set=HC	GT:AD:AF:DP	0/1:258,44:0.15:302
chr10	135232934	rs2243619	C	T	1237.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr10	135233541	rs2255246	A	G	18072.77	.	AC=2;AF=1.00;AN=2;DB;DP=701;set=Intersection	GT:AD:AF:DP	1/1:0,696:1.00:696
chr10	135237060	rs2480253	A	G	912.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:2,41:0.95:43
chr10	135237166	rs2492666	G	A	1361.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.88;QD=22.32;SOR=0.725;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr10	135237196	rs4838682	C	T	1459.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr10	135267445	rs2253522	T	C	3488.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr10	135267541	.	C	T	4668.77	.	AC=1;AF=0.500;AN=2;DP=466;set=Intersection	GT:AD:AF:DP	0/1:235,226:0.49:461
chr10	135267738	rs2253529	T	C	2363.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr10	135271789	rs2480245	C	T	11296.77	.	AC=2;AF=1.00;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	1/1:0,418:1.00:418
chr10	135272947	rs2257044	CC	AG	2288.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr10	135273463	rs731947	C	G	3878.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr10	135278193	rs2492654	A	G	5792.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.69;SOR=1.276;set=HC	GT:AD:AF:DP	1/1:0,217:1.00:217
chr10	135279283	rs2243812	T	C	5219.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr10	135279810	rs2243909	T	G	11463.77	.	AC=2;AF=1.00;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	1/1:0,423:1.00:423
chr10	135280765	rs2246634	C	T	6453.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr10	135340866	rs11445593	T	TC	2276.73	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr10	135347397	rs915909	T	C	8080.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr10	135347533	rs943976	A	G	1278.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr10	135350490	rs147973606	A	AGATGGGTGGAT	2480.73	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr10	135351137	rs2070676	G	C	1987.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr10	135351174	rs2070677	T	A	3747.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr10	135351362	rs2515641	T	C	11669.77	.	AC=2;AF=1.00;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	1/1:0,419:1.00:419
chr10	135352153	rs2249694	A	G	2072.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr10	135352168	rs2249695	T	C	2439.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:1,79:0.99:80
chr10	135352509	rs2480257	T	A	7374.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.63;SOR=2.458;set=HC	GT:AD:AF:DP	1/1:0,173:1.00:173
chr10	135352514	rs2480256	A	G	7078.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.67;SOR=2.716;set=HC	GT:AD:AF:DP	1/1:0,155:1.00:155
chr10	135369054	rs3020514	A	G	3842.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr10	135370060	rs2987791	G	C	428.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr10	135371466	rs2987792	T	C	1761.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr10	135381215	rs3020499	A	G	690.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr10	135381276	rs3020500	T	C	1071.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr10	135381592	rs3020501	C	G	12130.77	.	AC=2;AF=1.00;AN=2;DB;DP=462;set=Intersection	GT:AD:AF:DP	1/1:0,460:1.00:460
chr10	135381623	rs3020502	T	C	16646.77	.	AC=2;AF=1.00;AN=2;DB;DP=636;MQ=59.98;set=Intersection	GT:AD:AF:DP	1/1:0,630:1.00:630
chr10	135381766	rs3020503	C	T	15809.77	.	AC=2;AF=1.00;AN=2;DB;DP=588;MQ=59.99;set=Intersection	GT:AD:AF:DP	1/1:0,575:1.00:575
chr10	135381927	rs2987800	T	G	4417.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr10	135438929	rs201901202	T	G	4394.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.609;ClippingRankSum=0.000;DB;DP=1210;ExcessHet=3.0103;FS=1.618;MLEAC=1;MLEAF=0.500;MQ=54.20;MQRankSum=-17.296;QD=3.64;ReadPosRankSum=3.997;SOR=0.553;set=HC	GT:AD:AF:DP	0/1:1034,173:0.14:1207
chr10	135438951	rs200483318	G	A	4771.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.027;ClippingRankSum=0.000;DB;DP=1218;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.57;MQRankSum=-20.601;QD=3.93;ReadPosRankSum=5.931;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:1024,189:0.16:1213
chr10	135438955	rs201563622	C	T	4777.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.845;ClippingRankSum=0.000;DB;DP=1200;ExcessHet=3.0103;FS=0.729;MLEAC=1;MLEAF=0.500;MQ=55.86;MQRankSum=-21.222;QD=4.00;ReadPosRankSum=6.006;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:1008,187:0.16:1195
chr10	135438967	rs145018822	C	T	4702.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.632;ClippingRankSum=0.000;DB;DP=1180;ExcessHet=3.0103;FS=1.580;MLEAC=1;MLEAF=0.500;MQ=56.77;MQRankSum=-23.885;QD=4.02;ReadPosRankSum=4.879;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:989,182:0.16:1171
chr10	135438977	rs79631365	G	A	4476.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.653;ClippingRankSum=0.000;DB;DP=1151;ExcessHet=3.0103;FS=0.738;MLEAC=1;MLEAF=0.500;MQ=57.70;MQRankSum=-27.997;QD=3.93;ReadPosRankSum=2.526;SOR=0.797;set=HC	GT:AD:AF:DP	0/1:962,178:0.16:1140
chr10	135439196	rs141975116	C	T	222.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.565;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=19.571;MLEAC=1;MLEAF=0.500;MQ=42.89;MQRankSum=-2.027;QD=2.01;ReadPosRankSum=1.161;SOR=0.027;set=HC	GT:AD:AF:DP	0/1:98,13:0.12:111
chr10	135439220	rs138977113	C	T	348.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.359;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=15.876;MLEAC=1;MLEAF=0.500;MQ=43.82;MQRankSum=-4.402;QD=3.67;ReadPosRankSum=0.167;SOR=0.059;set=HC	GT:AD:AF:DP	0/1:79,16:0.17:95
chr10	135439300	rs200952781	T	G	46.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.287;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=45.33;MQRankSum=-4.152;QD=1.34;ReadPosRankSum=0.293;SOR=0.255;set=HC	GT:AD:AF:DP	0/1:31,4:0.11:35
chr10	135439305	rs187707655	C	T	46.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.779;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=45.31;MQRankSum=-4.098;QD=1.38;ReadPosRankSum=0.753;SOR=0.273;set=HC	GT:AD:AF:DP	0/1:30,4:0.12:34
chr11	193096	rs2280539	T	C	5901.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:44,253:0.85:297
chr11	193112	rs7951297	C	T	3672.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:121,162:0.57:283
chr11	193146	rs61736219	G	A	1168.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.223;ClippingRankSum=0.000;DB;DP=228;ExcessHet=3.0103;FS=1.181;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.24;ReadPosRankSum=1.195;SOR=0.810;set=HC	GT:AD:AF:DP	0/1:156,67:0.30:223
chr11	193194	rs2686896	T	C	941.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.890;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=4.394;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.47;ReadPosRankSum=0.084;SOR=0.353;set=HC	GT:AD:AF:DP	0/1:74,52:0.41:126
chr11	193863	rs2294081	T	C	6605.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.440;ClippingRankSum=0.000;DB;DP=379;ExcessHet=3.0103;FS=3.933;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.71;ReadPosRankSum=0.963;SOR=0.899;set=HC	GT:AD:AF:DP	0/1:199,174:0.47:373
chr11	193863	.	TAT	CAG	2944	.	AC=1;AF=0.500;AN=2;BRF=0.43;FR=0.5000;HP=1;HapScore=2;MGOF=2;MMLQ=28;MQ=60.0;NF=44;NR=66;PP=2944;QD=20;SC=TCAAGTCCTGTATAGATGGCC;SbPval=0.67;Source=Platypus;TC=240;TCF=104;TCR=136;TR=110;WE=193873;WS=193853;set=Platypus	GT:AD:AF:DP	1/0:130,110:0.46:240
chr11	193865	rs2686894	T	G	6605.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.762;ClippingRankSum=0.000;DB;DP=371;ExcessHet=3.0103;FS=3.371;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.10;ReadPosRankSum=1.309;SOR=0.880;set=HC	GT:AD:AF:DP	0/1:195,170:0.47:365
chr11	193979	.	C	T	513.77	.	AC=1;AF=0.500;AN=2;DP=104;set=Intersection	GT:AD:AF:DP	0/1:74,28:0.27:102
chr11	194332	.	C	CA	1493.73	.	AC=1;AF=0.500;AN=2;DP=177;set=Intersection	GT:AD:AF:DP	0/1:117,60:0.34:177
chr11	194598	rs79601819	C	T	160.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.419;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.14;ReadPosRankSum=-0.722;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:120,21:0.15:141
chr11	194640	rs2979429	G	A	833.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:49,30:0.38:79
chr11	197557	rs7103852	A	G	5682.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr11	207359	rs375304678	C	CGGCCACAGCCGCCTCAGACGT	4059.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.576;ClippingRankSum=0.000;DB;DP=233;ExcessHet=3.0103;FS=2.692;MLEAC=2;MLEAF=1.000;MQ=60.05;MQRankSum=0.000;QD=27.43;ReadPosRankSum=-0.863;SOR=1.714;set=HC	GT:AD:AF:DP	1/1:4,144:0.97:148
chr11	207400	rs71487219	A	G	3098.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.09;QD=27.18;SOR=1.589;set=HC	GT:AD:AF:DP	1/1:0,114:1.00:114
chr11	207462	rs11245998	A	G	1014.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr11	209002	rs2177173	A	G	1598.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.55;SOR=3.990;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr11	214421	rs3216	G	C	17110.77	.	AC=2;AF=1.00;AN=2;DB;DP=646;set=Intersection	GT:AD:AF:DP	1/1:2,635:1.00:637
chr11	219089	rs511744	T	C	1779.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr11	223832	rs144507767	C	A	5082.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr11	223854	rs201048317	C	T	3526.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.98;QD=48.98;SOR=1.226;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr11	223856	.	A	ACAAACCTCCAGGGAGGTCCCAAGGATGAG	3202.73	.	AC=2;AF=1.00;AN=2;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.97;QD=45.11;SOR=1.195;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr11	223976	.	ACTCCTCCCTGCACAGGCCTGCCGACAGCCCATGAGATGACTCCTGTACCCCTCCCTTCCCCTGCCCTCCAGC	A	2408.73	.	AC=1;AF=0.500;AN=2;ClippingRankSum=0.000;DP=158;ExcessHet=3.0103;FS=2.072;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=1.795;QD=15.54;SOR=0.529;set=HC	GT:AD:AF:DP	0/1:60,95:0.61:155
chr11	224048	.	C	A	2965	.	AC=2;AF=1.00;AN=2;BRF=0.54;FR=1.0000;HP=1;HapScore=1;MGOF=5;MMLQ=28;MQ=58.85;NF=69;NR=73;PP=2965;QD=20;SC=TGCCCTCCAGCCTCCTCCCTG;SbPval=0.52;Source=Platypus;TC=142;TCF=69;TCR=73;TR=142;WE=224056;WS=224038;set=Platypus	GT:AD:AF:DP	1/1:0,142:1.00:142
chr11	233067	rs11246020	C	T	5225.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr11	233212	rs11555236	C	A	5739.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:4,208:0.98:212
chr11	233298	rs12365010	T	G	7238.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:3,254:0.99:257
chr11	235894	rs9795476	T	G	2905.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr11	236343	rs7118852	A	G	2357.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr11	236370	.	C	CCGGCGCCCCGCCCG	1158.73	.	AC=2;AF=1.00;AN=2;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.92;QD=42.92;SOR=5.211;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr11	236871	rs2272563	T	C	351.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr11	237087	rs1045288	A	G	5384.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr11	243987	rs6598060	G	A	2146.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr11	244106	rs10902112	A	G	8432.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.62;SOR=0.704;set=HC	GT:AD:AF:DP	1/1:0,189:1.00:189
chr11	244108	rs7107362	A	G	8489.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.89;SOR=0.704;set=HC	GT:AD:AF:DP	1/1:0,185:1.00:185
chr11	244115	rs7128044	G	A	8317.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.96;SOR=0.748;set=HC	GT:AD:AF:DP	1/1:0,185:1.00:185
chr11	244129	rs7116130	C	T	4752.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr11	244141	rs7128029	G	A	4823.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr11	244167	rs1128320	C	T	6905.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.99;SOR=0.994;set=HC	GT:AD:AF:DP	1/1:0,157:1.00:157
chr11	244171	rs1128321	T	C	6786.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.36;SOR=1.036;set=HC	GT:AD:AF:DP	1/1:0,153:1.00:153
chr11	244197	rs1128322	T	C	3366.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr11	244414	rs2272565	C	T	6093.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:1,220:1.00:221
chr11	244490	rs3830667	ATACCTTTTAG	A	7167.73	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:4,262:0.98:266
chr11	244552	rs2272566	A	G	7973.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:1,302:1.00:303
chr11	247200	rs3830001	G	T	1560.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr11	250877	rs12793187	C	T	4504.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:2,171:0.99:173
chr11	252318	rs6598055	C	T	1530.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr11	280221	rs6421985	A	C	5510.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr11	280673	rs12807092	C	T	2552.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr11	280816	rs7482965	AT	TC	17752.77	.	AC=2;AF=1.00;AN=2;DB;DP=400;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,396:1.00:396
chr11	284093	rs9734280	A	G	1976.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr11	284538	rs6598047	T	C	11505.77	.	AC=2;AF=1.00;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	1/1:0,440:1.00:440
chr11	290816	rs10902120	A	G	5047.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:2,190:0.99:192
chr11	292798	rs11602423	A	G	1518.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr11	293001	rs35259273	A	AG	8441.73	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:1,239:1.00:240
chr11	294512	rs149098966	A	ACCCCAGGCTGTCCCTCACCCCCAGACTGCCCTCTCAC	6724.73	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:1,94:0.99:95
chr11	308065	rs9704108	T	C	3945.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr11	308290	rs1058900	T	C	20430.77	.	AC=2;AF=1.00;AN=2;DB;DP=510;set=Intersection	GT:AD:AF:DP	1/1:4,498:0.99:502
chr11	308314	rs14408	T	C	18973.77	.	AC=2;AF=1.00;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	1/1:3,428:0.99:431
chr11	308363	rs1058935	G	C	8819.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:2,321:0.99:323
chr11	308426	rs1058964	G	C	6808.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:2,230:0.99:232
chr11	314152	.	C	T	10335.77	.	AC=1;AF=0.500;AN=2;DP=1321;set=Intersection	GT:AD:AF:DP	0/1:787,529:0.40:1316
chr11	314207	rs9667990	C	G	33758.77	.	AC=2;AF=1.00;AN=2;DB;DP=1224;set=Intersection	GT:AD:AF:DP	1/1:0,1214:1.00:1214
chr11	320166	rs28655829	T	C	2121.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.91;QD=31.20;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr11	320237	rs28688930	C	G	3547.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.93;QD=28.38;SOR=1.746;set=HC	GT:AD:AF:DP	1/1:0,125:1.00:125
chr11	369958	.	CGGCGCGGGG	C	927.73	.	AC=2;AF=1.00;AN=2;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.17;SOR=2.737;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr11	369999	.	C	T	466.77	.	AC=2;AF=1.00;AN=2;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=66.68;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr11	370020	.	GC	G	54.70	.	AC=2;AF=1.00;ALERT;AN=2;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.35;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr11	370022	.	GGCGCGGGGGGCGCGGGC	G	54.70	.	AC=2;AF=1.00;ALERT;AN=2;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=54.70;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,1:1.00:1
chr11	372095	rs72847391	T	C	5739.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:2,212:0.99:214
chr11	372225	rs79491678	C	T	12741.77	.	AC=2;AF=1.00;AN=2;DB;DP=486;set=Intersection	GT:AD:AF:DP	1/1:0,480:1.00:480
chr11	373317	rs72847393	G	T	10037.77	.	AC=2;AF=1.00;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	1/1:4,371:0.99:375
chr11	373408	rs376849299	AC	A	4464.73	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:4,175:0.98:179
chr11	375804	rs61876283	G	A	16595.77	.	AC=2;AF=1.00;AN=2;DB;DP=571;set=Intersection	GT:AD:AF:DP	1/1:0,565:1.00:565
chr11	377437	rs61876284	T	C	1721.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr11	433387	rs7395065	A	G	19272.77	.	AC=2;AF=1.00;AN=2;DB;DP=714;set=Intersection	GT:AD:AF:DP	1/1:0,709:1.00:709
chr11	502271	rs147659361	C	A	4769.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr11	549959	rs7942030	C	T	13867.77	.	AC=2;AF=1.00;AN=2;DB;DP=497;set=Intersection	GT:AD:AF:DP	1/1:0,492:1.00:492
chr11	550028	rs11246180	C	G	15174.77	.	AC=2;AF=1.00;AN=2;DB;DP=562;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.54;SOR=1.804;set=HC	GT:AD:AF:DP	1/1:0,551:1.00:551
chr11	551405	rs7396875	G	A	21927.77	.	AC=2;AF=1.00;AN=2;DB;DP=845;set=Intersection	GT:AD:AF:DP	1/1:0,839:1.00:839
chr11	551753	rs4963198	G	A	27714.77	.	AC=2;AF=1.00;AN=2;DB;DP=1075;set=Intersection	GT:AD:AF:DP	1/1:0,1058:1.00:1058
chr11	552547	rs3740652	T	C	1694.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr11	552756	rs12361381	T	C	12403.77	.	AC=2;AF=1.00;AN=2;DB;DP=470;set=Intersection	GT:AD:AF:DP	1/1:1,466:1.00:467
chr11	552787	rs12361383	TG	CC	16410.77	.	AC=2;AF=1.00;AN=2;DB;DP=372;JOINED;set=Intersection	GT:AD:AF:DP	1/1:1,369:1.00:370
chr11	552875	rs28575794	A	G	2972.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:2,99:0.98:101
chr11	553866	rs12792519	G	A	3462.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr11	554166	rs10902170	C	G	8548.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr11	554214	rs10902171	G	C	14478.77	.	AC=2;AF=1.00;AN=2;DB;DP=542;set=Intersection	GT:AD:AF:DP	1/1:0,538:1.00:538
chr11	554299	rs10902172	C	G	14934.77	.	AC=2;AF=1.00;AN=2;DB;DP=568;set=Intersection	GT:AD:AF:DP	1/1:1,566:1.00:567
chr11	555157	.	G	GGGAGGGGAGGGGAGCGGCGA	872.73	.	AC=2;AF=1.00;AN=2;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr11	555223	rs55731724	AC	A	1402.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr11	556121	rs936467	G	A	1254.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr11	556457	rs28407128	T	C	10343.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:0,358:1.00:358
chr11	556521	rs28406183	C	G	10154.77	.	AC=2;AF=1.00;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	1/1:2,385:0.99:387
chr11	556857	rs7938269	G	C	7678.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr11	557342	rs936466	T	C	6880.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr11	557989	rs7129811	C	T	9147.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:0,332:1.00:332
chr11	558884	rs2061586	C	T	13596.77	.	AC=2;AF=1.00;AN=2;DB;DP=560;set=Intersection	GT:AD:AF:DP	1/1:0,546:1.00:546
chr11	559016	rs3943356	C	T	15667.77	.	AC=2;AF=1.00;AN=2;DB;DP=601;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.29;SOR=0.720;set=HC	GT:AD:AF:DP	1/1:0,596:1.00:596
chr11	560801	rs71462097	C	CG	1422.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.381;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.34;MQRankSum=0.347;QD=25.87;ReadPosRankSum=-1.508;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:2,53:0.96:55
chr11	568211	rs7395206	G	A	952.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr11	582264	rs71022934	CT	C	265	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.595;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=2.570;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.55;ReadPosRankSum=-2.067;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:6,25:0.81:31
chr11	606656	rs936470	G	C	8133.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr11	610277	rs11246212	T	C	14578.77	.	AC=2;AF=1.00;AN=2;DB;DP=554;set=Intersection	GT:AD:AF:DP	1/1:0,548:1.00:548
chr11	612822	rs34948036	C	CT	4061.73	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr11	614864	rs1061501	C	T	38205.77	.	AC=2;AF=1.00;AN=2;DB;DP=1411;set=Intersection	GT:AD:AF:DP	1/1:0,1403:1.00:1403
chr11	616970	rs1610161	A	T	5109.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr11	617537	rs2740380	C	T	15234.77	.	AC=2;AF=1.00;AN=2;DB;DP=592;set=Intersection	GT:AD:AF:DP	1/1:1,582:1.00:583
chr11	617967	rs2740379	C	G	12021.77	.	AC=2;AF=1.00;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	1/1:0,391:1.00:391
chr11	618172	rs6598008	A	G	21908.77	.	AC=2;AF=1.00;AN=2;DB;DP=830;set=Intersection	GT:AD:AF:DP	1/1:2,808:1.00:810
chr11	618998	rs2740375	G	A	7865.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;MQ=60.03;set=Intersection	GT:AD:AF:DP	1/1:4,304:0.99:308
chr11	619789	rs2246614	T	G	12117.77	.	AC=2;AF=1.00;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	1/1:1,417:1.00:418
chr11	636496	rs936461	A	G	2575.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr11	636690	rs936462	G	A	4003.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.34;QD=25.02;SOR=0.744;set=HC	GT:AD:AF:DP	1/1:0,160:1.00:160
chr11	636701	rs3842250	CG	C	5351.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:1,134:0.99:135
chr11	636703	rs2396543	G	T	3281.77	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=0.183;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.40;MQRankSum=0.397;QD=28.54;ReadPosRankSum=0.176;SOR=0.463;set=HC	GT:AD:AF:DP	1/1:3,112:0.97:115
chr11	639374	rs28540443	C	G	6689.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:10,259:0.96:269
chr11	640119	rs762502	C	T	2079.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr11	640742	rs372134586	TG	T	2019.73	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr11	651431	.	T	A	284.77	.	AC=2;AF=1.00;AN=2;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.73;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr11	654091	rs7112962	G	A	3712.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr11	674454	rs11246258	G	T	3336.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.34;SOR=3.737;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr11	674458	rs6597997	G	A	3401.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.52;SOR=3.373;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr11	674499	rs6597996	G	A	4768.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr11	679915	rs28392994	G	A	4567.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr11	685082	rs55670454	C	CTT	739.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.239;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.808;QD=15.10;ReadPosRankSum=-0.891;SOR=0.507;set=HC	GT:AD:AF:DP	0/1:9,40:0.82:49
chr11	686714	rs10794330	G	A	2133.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr11	688091	rs12277188	C	T	5425.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:2,197:0.99:199
chr11	691636	rs11246268	G	A	17159.77	.	AC=2;AF=1.00;AN=2;DB;DP=671;set=Intersection	GT:AD:AF:DP	1/1:0,659:1.00:659
chr11	698807	rs4963166	C	T	11139.77	.	AC=2;AF=1.00;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	1/1:0,417:1.00:417
chr11	700247	rs7482162	A	C	10524.77	.	AC=2;AF=1.00;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	1/1:2,395:0.99:397
chr11	700526	rs34654075	C	CA	626.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.033;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=0.526;QD=11.40;ReadPosRankSum=-0.656;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:14,41:0.75:55
chr11	704753	rs7941896	G	A	5184.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr11	709567	rs12283031	G	A	21766.77	.	AC=2;AF=1.00;AN=2;DB;DP=831;set=Intersection	GT:AD:AF:DP	1/1:2,815:1.00:817
chr11	709680	rs11605783	T	C	7794.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr11	710558	rs7395822	G	A	10184.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:0,373:1.00:373
chr11	720978	.	G	GCCGGCAGGGGAGGGGAGGAGC,GC	1963.73	.	AC=2,0;AF=1.00,0.00;AN=2;DP=35;set=Intersection	GT:AF:DP	1/1:1.00:20
chr11	721877	rs74916186	G	C	10525.77	.	AC=2;AF=1.00;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	1/1:0,370:1.00:370
chr11	722202	rs9734804	G	C	9700.77	.	AC=2;AF=1.00;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	1/1:0,360:1.00:360
chr11	726178	rs28498399	G	C	23858.77	.	AC=2;AF=1.00;AN=2;DB;DP=868;set=Intersection	GT:AD:AF:DP	1/1:1,862:1.00:863
chr11	726231	.	T	TGG,TG	15655.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.793;ClippingRankSum=0.000;DP=573;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=31.19;ReadPosRankSum=-0.538;SOR=1.008;set=HC	GT:AD:AF:DP	1/2:9,342,151:0.68,0.30:502
chr11	726581	rs10902206	T	C	5727.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr11	726814	rs10902207	C	G	3138.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr11	758927	rs34225557	CT	C	7626.73	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:1,325:1.00:326
chr11	793502	rs79478359	C	T	16025.77	.	AC=2;AF=1.00;AN=2;DB;DP=616;set=Intersection	GT:AD:AF:DP	1/1:1,610:1.00:611
chr11	793588	rs80335370	G	A	12158.77	.	AC=2;AF=1.00;AN=2;DB;DP=473;set=Intersection	GT:AD:AF:DP	1/1:0,464:1.00:464
chr11	799670	rs28649421	G	C	3637.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:1,114:0.99:115
chr11	800485	.	TC	AT	2944	.	AC=1;AF=0.500;AN=2;BRF=0.61;FR=0.5000;HP=2;HapScore=1;MGOF=35;MMLQ=23;MQ=59.39;NF=180;NR=110;PP=2944;QD=20;SC=CAAGGAGGGCTCGGGGAGGAC;SbPval=0.86;Source=Platypus;TC=514;TCF=275;TCR=239;TR=290;WE=800494;WS=800475;set=Platypus	GT:AD:AF:DP	1/0:224,290:0.56:514
chr11	800486	.	C	CGGGGAGGACGGTAAGGCTCCCCCTCCAGGACAGGGAGGGCCTATCAGCATCCACGCAGTCAGGGCAATCCAGGGGGCAGGGGTGGGCTGAGCAAGGAGGGCAT	29225.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.160;ClippingRankSum=0.000;DP=572;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;MQRankSum=0.000;QD=65.53;ReadPosRankSum=0.772;SOR=0.227;set=HC	GT:AD:AF:DP	1/1:2,444:1.00:446
chr11	801644	rs113521642	A	T	7691.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:2,281:0.99:283
chr11	802115	rs7479101	A	G	29755.77	.	AC=2;AF=1.00;AN=2;DB;DP=688;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.82;SOR=0.744;set=HC	GT:AD:AF:DP	1/1:0,679:1.00:679
chr11	802125	rs28498421	T	C	29676.77	.	AC=2;AF=1.00;AN=2;DB;DP=673;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.56;SOR=0.800;set=HC	GT:AD:AF:DP	1/1:0,666:1.00:666
chr11	802902	rs28360884	T	G	1360.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr11	804027	rs77173309	G	A	3651.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr11	824496	rs76574419	C	G	6917.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr11	824789	rs1138693	T	C	22450.77	.	AC=2;AF=1.00;AN=2;DB;DP=818;set=Intersection	GT:AD:AF:DP	1/1:0,808:1.00:808
chr11	824805	rs1138694	C	T	23835.77	.	AC=2;AF=1.00;AN=2;DB;DP=884;set=Intersection	GT:AD:AF:DP	1/1:0,872:1.00:872
chr11	824987	rs66460720	CTGCA	C	21874.73	.	AC=2;AF=1.00;AN=2;DB;DP=560;MQ=60.17;set=Intersection	GT:AD:AF:DP	1/1:0,494:1.00:494
chr11	836023	rs28475448	C	T	11040.77	.	AC=2;AF=1.00;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	1/1:0,407:1.00:407
chr11	836227	rs28434354	A	G	9868.77	.	AC=2;AF=1.00;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	1/1:0,344:1.00:344
chr11	836539	rs56063221	TG	T	7950.73	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:7,300:0.98:307
chr11	842653	rs35249369	C	G	2277.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr11	849090	rs28402197	C	G	2000.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr11	850170	rs28704105	T	G	15804.77	.	AC=2;AF=1.00;AN=2;DB;DP=623;set=Intersection	GT:AD:AF:DP	1/1:2,607:1.00:609
chr11	862652	rs28505621	T	C	12323.77	.	AC=2;AF=1.00;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	1/1:0,452:1.00:452
chr11	864626	rs28377158	A	G	5028.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr11	865447	rs28423070	G	A	1925.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr11	865503	rs28581489	G	A	4904.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr11	866044	rs28457111	A	G	4518.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr11	866183	rs28439203	T	C	1146.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr11	866498	rs28663055	T	C	11608.77	.	AC=2;AF=1.00;AN=2;DB;DP=439;set=Intersection	GT:AD:AF:DP	1/1:0,421:1.00:421
chr11	870095	rs113580509	G	A	21969.77	.	AC=2;AF=1.00;AN=2;DB;DP=842;set=Intersection	GT:AD:AF:DP	1/1:1,821:1.00:822
chr11	870446	rs6682	G	A	6320.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr11	870467	rs1127800	C	T	5837.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr11	883959	rs142617130	G	C	8225.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:1,294:1.00:295
chr11	884193	rs61869682	C	T	7029.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr11	900894	rs28454252	T	G	5536.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr11	900929	rs10794339	C	G	9148.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:0,335:1.00:335
chr11	903070	rs28380110	G	C	17956.77	.	AC=2;AF=1.00;AN=2;DB;DP=661;set=Intersection	GT:AD:AF:DP	1/1:0,655:1.00:655
chr11	903781	.	C	CA	98.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.471;ClippingRankSum=0.000;DP=120;ExcessHet=3.0103;FS=3.124;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.89;ReadPosRankSum=2.113;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:89,22:0.20:111
chr11	970029	rs7396107	C	T	2357.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr11	970373	rs7394436	G	C	5302.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr11	970405	rs7394427	G	A	3256.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr11	972270	rs7933889	C	T	11003.77	.	AC=2;AF=1.00;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	1/1:2,394:0.99:396
chr11	977036	rs6597960	C	T	12279.77	.	AC=2;AF=1.00;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	1/1:0,426:1.00:426
chr11	985547	rs10794358	C	T	20769.77	.	AC=2;AF=1.00;AN=2;DB;DP=770;MQ=60.01;set=Intersection	GT:AD:AF:DP	1/1:0,760:1.00:760
chr11	992691	rs10902263	G	T	5618.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr11	1003523	rs10902264	G	A	2368.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr11	1003642	rs10902265	G	A	11401.77	.	AC=2;AF=1.00;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	1/1:0,425:1.00:425
chr11	1007086	.	G	A	11013.77	.	AC=2;AF=1.00;AN=2;DP=414;set=Intersection	GT:AD:AF:DP	1/1:0,412:1.00:412
chr11	1007831	rs10902267	T	C	3283.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr11	1009416	rs7126709	C	T	5825.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr11	1009589	rs28612764	A	G	1836.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr11	1009622	rs28464902	C	T	2506.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;MQ=59.76;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr11	1009890	rs11246380	T	C	7860.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr11	1010694	rs1128413	C	T	5233.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr11	1010750	rs1128419	G	A	2205.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr11	1011490	rs7950955	G	A	14950.77	.	AC=2;AF=1.00;AN=2;DB;DP=563;set=Intersection	GT:AD:AF:DP	1/1:2,554:1.00:556
chr11	1016640	rs111704427	G	A	1119.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.858;ClippingRankSum=0.000;DB;DP=577;ExcessHet=3.0103;FS=12.118;MLEAC=1;MLEAF=0.500;MQ=58.19;MQRankSum=-9.220;QD=1.95;ReadPosRankSum=3.011;SOR=1.924;set=HC	GT:AD:AF:DP	0/1:511,64:0.11:575
chr11	1016655	rs77024070	G	A	1207.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.619;ClippingRankSum=0.000;DB;DP=631;ExcessHet=3.0103;FS=9.668;MLEAC=1;MLEAF=0.500;MQ=57.84;MQRankSum=-9.070;QD=1.93;ReadPosRankSum=5.416;SOR=1.738;set=HC	GT:AD:AF:DP	0/1:559,68:0.11:627
chr11	1016665	rs77438942	C	T	4932.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.165;ClippingRankSum=0.000;DB;DP=659;ExcessHet=3.0103;FS=8.891;MLEAC=1;MLEAF=0.500;MQ=57.47;MQRankSum=-18.180;QD=7.55;ReadPosRankSum=-1.307;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:446,207:0.32:653
chr11	1016704	rs75826443	C	A	5923.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.889;ClippingRankSum=0.000;DB;DP=692;ExcessHet=3.0103;FS=0.600;MLEAC=1;MLEAF=0.500;MQ=55.91;MQRankSum=-9.205;QD=8.70;ReadPosRankSum=0.531;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:503,178:0.26:681
chr11	1016713	rs76406481	T	C	8937.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=6.315;ClippingRankSum=0.000;DB;DP=712;ExcessHet=3.0103;FS=8.706;MLEAC=1;MLEAF=0.500;MQ=55.86;MQRankSum=-13.019;QD=12.71;ReadPosRankSum=-3.119;SOR=1.148;set=HC	GT:AD:AF:DP	0/1:464,239:0.34:703
chr11	1016714	rs373360588	G	A	683.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.027;ClippingRankSum=0.000;DB;DP=712;ExcessHet=3.0103;FS=2.063;MLEAC=1;MLEAF=0.500;MQ=55.83;MQRankSum=-9.617;QD=0.98;ReadPosRankSum=0.299;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:635,63:0.09:698
chr11	1016715	rs78295717	T	C	2241.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.319;ClippingRankSum=0.000;DB;DP=713;ExcessHet=3.0103;FS=6.728;MLEAC=1;MLEAF=0.500;MQ=55.77;MQRankSum=-9.155;QD=3.19;ReadPosRankSum=4.175;SOR=1.431;set=HC	GT:AD:AF:DP	0/1:605,97:0.14:702
chr11	1016719	.	T	G	2221.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.090;ClippingRankSum=0.000;DP=734;ExcessHet=3.0103;FS=5.134;MLEAC=1;MLEAF=0.500;MQ=55.83;MQRankSum=-8.618;QD=3.08;ReadPosRankSum=4.078;SOR=1.308;set=HC	GT:AD:AF:DP	0/1:618,103:0.14:721
chr11	1016722	rs144616203	T	G	9940.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.996;ClippingRankSum=0.000;DB;DP=771;ExcessHet=3.0103;FS=20.699;MLEAC=1;MLEAF=0.500;MQ=55.94;MQRankSum=-17.809;QD=13.17;ReadPosRankSum=-1.687;SOR=1.417;set=HC	GT:AD:AF:DP	0/1:467,288:0.38:755
chr11	1016724	rs3208810	A	G	16289.77	.	AC=1;AF=0.500;AN=2;DB;DP=790;set=Intersection	GT:AD:AF:DP	0/1:348,424:0.55:772
chr11	1016732	.	TG	CT	600.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.466;ClippingRankSum=0.000;DP=893;ExcessHet=3.0103;FS=0.984;JOINED;MLEAC=1;MLEAF=0.500;MQ=56.01;MQRankSum=-8.431;QD=0.69;ReadPosRankSum=-0.658;SOR=0.587;set=HC	GT:AD:AF:DP	0/1:800,74:0.08:874
chr11	1016776	rs33988517	C	T	18872.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.041;ClippingRankSum=0.000;DB;DP=1554;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.500;MQ=57.13;MQRankSum=-1.718;QD=12.41;ReadPosRankSum=2.384;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:810,711:0.47:1521
chr11	1016779	.	G	A	4301.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.553;ClippingRankSum=0.000;DP=1616;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.19;MQRankSum=-4.087;QD=2.68;ReadPosRankSum=0.674;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:1396,208:0.13:1604
chr11	1016789	rs79968742	T	A	4443.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.722;ClippingRankSum=0.000;DB;DP=1751;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.32;MQRankSum=-2.498;QD=2.55;ReadPosRankSum=0.504;SOR=0.591;set=HC	GT:AD:AF:DP	0/1:1525,217:0.12:1742
chr11	1016795	rs111397691	C	G	994.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.466;ClippingRankSum=0.000;DB;DP=1858;ExcessHet=3.0103;FS=0.799;MLEAC=1;MLEAF=0.500;MQ=57.46;MQRankSum=-1.343;QD=0.54;ReadPosRankSum=2.137;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:1608,242:0.13:1850
chr11	1016800	rs199626069	G	A	4887.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.246;ClippingRankSum=0.000;DB;DP=1950;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.64;MQRankSum=-3.320;QD=2.52;ReadPosRankSum=1.049;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:1708,233:0.12:1941
chr11	1016802	rs77342817	T	A	3984.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.984;ClippingRankSum=0.000;DB;DP=1974;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.65;MQRankSum=-1.359;QD=2.03;ReadPosRankSum=1.470;SOR=0.630;set=HC	GT:AD:AF:DP	0/1:1744,221:0.11:1965
chr11	1016810	rs75998609	G	T	3633.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.402;ClippingRankSum=0.000;DB;DP=2133;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.88;MQRankSum=-1.753;QD=1.71;ReadPosRankSum=1.553;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:1894,228:0.11:2122
chr11	1016818	.	A	G	1262.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.730;ClippingRankSum=0.000;DP=2239;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.01;MQRankSum=1.010;QD=0.57;ReadPosRankSum=-0.889;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:2041,185:0.08:2226
chr11	1016819	rs369828826	G	T	133.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.717;ClippingRankSum=0.000;DB;DP=2267;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.03;MQRankSum=0.917;QD=0.06;ReadPosRankSum=1.544;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:1985,267:0.12:2252
chr11	1016825	.	G	A	401.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.569;ClippingRankSum=0.000;DP=2370;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.16;MQRankSum=-1.872;QD=0.17;ReadPosRankSum=2.209;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:2073,282:0.12:2355
chr11	1016834	rs34740154	G	A	10032.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.238;ClippingRankSum=0.000;DB;DP=2503;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.32;MQRankSum=3.041;QD=4.04;ReadPosRankSum=-0.273;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:1992,492:0.20:2484
chr11	1016835	.	A	G	771.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.282;ClippingRankSum=0.000;DP=2520;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.34;MQRankSum=2.678;QD=0.31;ReadPosRankSum=-1.367;SOR=0.607;set=HC	GT:AD:AF:DP	0/1:2306,195:0.08:2501
chr11	1016869	rs35469308	A	T	32182.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=2030;set=Intersection	GT:AD:AF:DP	0/1:686,915:0.57:1601
chr11	1016870	rs76307106	G	A	9963.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.145;ClippingRankSum=0.000;DB;DP=2030;ExcessHet=3.0103;FS=1.486;MLEAC=1;MLEAF=0.500;MQ=58.39;MQRankSum=3.870;QD=4.94;ReadPosRankSum=1.987;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:1660,356:0.18:2016
chr11	1016871	.	G	T	1687.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.584;ClippingRankSum=0.000;DP=2018;ExcessHet=3.0103;FS=3.478;MLEAC=1;MLEAF=0.500;MQ=58.36;MQRankSum=2.479;QD=0.84;ReadPosRankSum=1.396;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:1833,171:0.09:2004
chr11	1016887	.	G	A	1393.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.721;ClippingRankSum=0.000;DP=1728;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.32;MQRankSum=2.471;QD=0.81;ReadPosRankSum=0.285;SOR=0.904;set=HC	GT:AD:AF:DP	0/1:1570,146:0.09:1716
chr11	1016890	rs113508205	G	A	1154.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.583;ClippingRankSum=0.000;DB;DP=1672;ExcessHet=3.0103;FS=0.966;MLEAC=1;MLEAF=0.500;MQ=58.32;MQRankSum=-4.472;QD=0.71;ReadPosRankSum=-3.518;SOR=0.922;set=HC	GT:AD:AF:DP	0/1:1469,149:0.09:1618
chr11	1016892	rs78784632	G	A	1766.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.005;ClippingRankSum=0.000;DB;DP=1641;ExcessHet=3.0103;FS=2.088;MLEAC=1;MLEAF=0.500;MQ=58.32;MQRankSum=-0.733;QD=1.08;ReadPosRankSum=3.590;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:1481,148:0.09:1629
chr11	1016894	rs34281988	G	A	18443.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.814;ClippingRankSum=0.000;DB;DP=1605;ExcessHet=3.0103;FS=1.176;MLEAC=1;MLEAF=0.500;MQ=58.30;MQRankSum=-1.258;QD=11.64;ReadPosRankSum=3.851;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:1066,519:0.33:1585
chr11	1016906	.	G	T	487.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.759;ClippingRankSum=0.000;DP=1394;ExcessHet=3.0103;FS=3.793;MLEAC=1;MLEAF=0.500;MQ=58.32;MQRankSum=2.374;QD=0.35;ReadPosRankSum=-3.817;SOR=1.119;set=HC	GT:AD:AF:DP	0/1:1280,105:0.08:1385
chr11	1016908	rs79018624	G	T	2031.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.676;ClippingRankSum=0.000;DB;DP=1366;ExcessHet=3.0103;FS=3.284;MLEAC=1;MLEAF=0.500;MQ=58.30;MQRankSum=-3.583;QD=1.50;ReadPosRankSum=2.776;SOR=0.829;set=HC	GT:AD:AF:DP	0/1:1220,137:0.10:1357
chr11	1016910	rs113559934	G	A	9380.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.860;ClippingRankSum=0.000;DB;DP=1342;ExcessHet=3.0103;FS=1.341;MLEAC=1;MLEAF=0.500;MQ=58.28;MQRankSum=-0.020;QD=7.16;ReadPosRankSum=-0.030;SOR=0.864;set=HC	GT:AD:AF:DP	0/1:1005,305:0.23:1310
chr11	1016912	.	G	A	821.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.860;ClippingRankSum=0.000;DP=1324;ExcessHet=3.0103;FS=2.216;MLEAC=1;MLEAF=0.500;MQ=58.23;MQRankSum=1.957;QD=0.62;ReadPosRankSum=-6.143;SOR=1.157;set=HC	GT:AD:AF:DP	0/1:1211,104:0.08:1315
chr11	1016914	rs74632841	G	T	788.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.886;ClippingRankSum=0.000;DB;DP=1290;ExcessHet=3.0103;FS=2.236;MLEAC=1;MLEAF=0.500;MQ=58.23;MQRankSum=1.886;QD=0.62;ReadPosRankSum=-6.908;SOR=1.215;set=HC	GT:AD:AF:DP	0/1:1178,103:0.08:1281
chr11	1016916	.	A	G	3932.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.959;ClippingRankSum=0.000;DP=1254;ExcessHet=3.0103;FS=1.598;MLEAC=1;MLEAF=0.500;MQ=58.23;MQRankSum=-13.468;QD=3.17;ReadPosRankSum=-1.733;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:1048,191:0.15:1239
chr11	1016928	rs34053383	C	G	30000.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.916;ClippingRankSum=0.000;DB;DP=1112;ExcessHet=3.0103;FS=1.153;MLEAC=1;MLEAF=0.500;MQ=58.29;MQRankSum=-10.682;QD=27.27;ReadPosRankSum=-3.199;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:384,716:0.65:1100
chr11	1016928	.	CTGGCC	GTGGCC,GTGGCT	2962	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.49;FR=0.5000,0.5000;HP=1;HapScore=1;MGOF=121;MMLQ=26;MQ=53.89;NF=617,183;NR=751,304;PP=2962,2944;QD=20;SC=CCTGCTGCTGCTGGCCGAGGT;SbPval=0.63;Source=Platypus;TC=1681;TCF=784;TCR=897;TR=1368,487;WE=1016942;WS=1016900;set=Platypus	GT:AF:DP	0/1:0.81:1681
chr11	1016933	rs199579978	C	T	196.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.107;ClippingRankSum=0.000;DB;DP=1081;ExcessHet=3.0103;FS=3.932;MLEAC=1;MLEAF=0.500;MQ=58.29;MQRankSum=-1.234;QD=0.18;ReadPosRankSum=-8.232;SOR=1.347;set=HC	GT:AD:AF:DP	0/1:1000,74:0.07:1074
chr11	1016934	.	G	A	5786.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.879;ClippingRankSum=0.000;DP=1079;ExcessHet=3.0103;FS=10.162;MLEAC=1;MLEAF=0.500;MQ=58.27;MQRankSum=-14.374;QD=5.40;ReadPosRankSum=4.825;SOR=1.346;set=HC	GT:AD:AF:DP	0/1:872,199:0.19:1071
chr11	1016957	rs200695483	T	G	5576.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.653;ClippingRankSum=0.000;DB;DP=1052;ExcessHet=3.0103;FS=7.040;MLEAC=1;MLEAF=0.500;MQ=58.55;MQRankSum=-15.966;QD=5.33;ReadPosRankSum=3.436;SOR=1.201;set=HC	GT:AD:AF:DP	0/1:853,193:0.18:1046
chr11	1016963	rs76273000	G	T	3629.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.127;ClippingRankSum=0.000;DB;DP=1059;ExcessHet=3.0103;FS=12.822;MLEAC=1;MLEAF=0.500;MQ=58.61;MQRankSum=-17.786;QD=3.45;ReadPosRankSum=5.295;SOR=1.948;set=HC	GT:AD:AF:DP	0/1:913,140:0.13:1053
chr11	1016968	.	T	C	2606.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.176;ClippingRankSum=0.000;DP=1054;ExcessHet=3.0103;FS=15.576;MLEAC=1;MLEAF=0.500;MQ=58.64;MQRankSum=-18.398;QD=2.49;ReadPosRankSum=4.505;SOR=2.139;set=HC	GT:AD:AF:DP	0/1:917,129:0.12:1046
chr11	1016972	.	G	A	2426.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.798;ClippingRankSum=0.000;DP=1081;ExcessHet=3.0103;FS=14.502;MLEAC=1;MLEAF=0.500;MQ=58.77;MQRankSum=-19.880;QD=2.30;ReadPosRankSum=4.345;SOR=2.165;set=HC	GT:AD:AF:DP	0/1:934,119:0.11:1053
chr11	1016976	rs78728217	T	G	3752.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=7.233;ClippingRankSum=0.000;DB;DP=1036;ExcessHet=3.0103;FS=13.984;MLEAC=1;MLEAF=0.500;MQ=58.72;MQRankSum=-21.016;QD=3.65;ReadPosRankSum=5.084;SOR=1.844;set=HC	GT:AD:AF:DP	0/1:875,154:0.15:1029
chr11	1016977	.	G	A	1838.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.861;ClippingRankSum=0.000;DP=1036;ExcessHet=3.0103;FS=14.502;MLEAC=1;MLEAF=0.500;MQ=58.75;MQRankSum=-20.112;QD=1.79;ReadPosRankSum=2.518;SOR=2.119;set=HC	GT:AD:AF:DP	0/1:916,113:0.11:1029
chr11	1016978	.	T	C	2025.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=7.946;ClippingRankSum=0.000;DP=1034;ExcessHet=3.0103;FS=13.577;MLEAC=1;MLEAF=0.500;MQ=58.75;MQRankSum=-22.723;QD=2.09;ReadPosRankSum=2.220;SOR=2.117;set=HC	GT:AD:AF:DP	0/1:854,113:0.12:967
chr11	1016984	rs78839362	G	A	2243.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.411;ClippingRankSum=0.000;DB;DP=1043;ExcessHet=3.0103;FS=7.585;MLEAC=1;MLEAF=0.500;MQ=58.75;MQRankSum=-22.399;QD=2.16;ReadPosRankSum=-0.104;SOR=1.581;set=HC	GT:AD:AF:DP	0/1:920,117:0.11:1037
chr11	1016987	.	G	A	1538.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.288;ClippingRankSum=0.000;DP=1038;ExcessHet=3.0103;FS=10.488;MLEAC=1;MLEAF=0.500;MQ=58.75;MQRankSum=-23.331;QD=1.51;ReadPosRankSum=-1.087;SOR=1.961;set=HC	GT:AD:AF:DP	0/1:919,102:0.10:1021
chr11	1017008	.	G	T	167.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.031;ClippingRankSum=0.000;DP=1045;ExcessHet=3.0103;FS=13.968;MLEAC=1;MLEAF=0.500;MQ=58.95;MQRankSum=-26.273;QD=0.16;ReadPosRankSum=-5.540;SOR=2.436;set=HC	GT:AD:AF:DP	0/1:969,70:0.07:1039
chr11	1017029	rs35621365	T	G	16925.77	.	AC=1;AF=0.500;AN=2;DB;DP=1024;set=Intersection	GT:AD:AF:DP	0/1:432,583:0.57:1015
chr11	1017068	rs78992004	C	T	210.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.616;ClippingRankSum=0.000;DB;DP=953;ExcessHet=3.0103;FS=8.296;MLEAC=1;MLEAF=0.500;MQ=59.31;MQRankSum=-26.512;QD=0.22;ReadPosRankSum=-6.624;SOR=2.097;set=HC	GT:AD:AF:DP	0/1:879,66:0.07:945
chr11	1017069	rs80333708	G	A	1671.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.601;ClippingRankSum=0.000;DB;DP=949;ExcessHet=3.0103;FS=3.403;MLEAC=1;MLEAF=0.500;MQ=59.28;MQRankSum=3.268;QD=1.78;ReadPosRankSum=-0.156;SOR=0.554;set=HC	GT:AD:AF:DP	0/1:766,171:0.18:937
chr11	1017074	rs79277162	A	G	1275.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.653;ClippingRankSum=0.000;DB;DP=951;ExcessHet=3.0103;FS=9.262;MLEAC=1;MLEAF=0.500;MQ=59.19;MQRankSum=-25.855;QD=1.36;ReadPosRankSum=-7.093;SOR=1.764;set=HC	GT:AD:AF:DP	0/1:857,82:0.09:939
chr11	1017088	rs74990443	A	C	2155.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.835;ClippingRankSum=0.000;DB;DP=922;ExcessHet=3.0103;FS=9.363;MLEAC=1;MLEAF=0.500;MQ=58.72;MQRankSum=-26.982;QD=2.40;ReadPosRankSum=-4.901;SOR=1.839;set=HC	GT:AD:AF:DP	0/1:792,107:0.12:899
chr11	1017092	.	G	C	336.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.244;ClippingRankSum=0.000;DP=906;ExcessHet=3.0103;FS=3.690;MLEAC=1;MLEAF=0.500;MQ=58.57;MQRankSum=-19.470;QD=0.38;ReadPosRankSum=-2.001;SOR=1.346;set=HC	GT:AD:AF:DP	0/1:814,71:0.08:885
chr11	1017113	rs74202058	T	C	2561.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.823;ClippingRankSum=0.000;DB;DP=806;ExcessHet=3.0103;FS=6.522;MLEAC=1;MLEAF=0.500;MQ=58.29;MQRankSum=-22.220;QD=3.24;ReadPosRankSum=1.973;SOR=1.384;set=HC	GT:AD:AF:DP	0/1:669,122:0.15:791
chr11	1017135	.	G	A	4083.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.260;ClippingRankSum=0.000;DP=1112;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.11;MQRankSum=-2.381;QD=3.73;ReadPosRankSum=0.105;SOR=0.791;set=HC	GT:AD:AF:DP	0/1:909,187:0.17:1096
chr11	1017154	rs112965257	T	G	2976.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.050;ClippingRankSum=0.000;DB;DP=996;ExcessHet=3.0103;FS=1.743;MLEAC=1;MLEAF=0.500;MQ=59.29;MQRankSum=-4.774;QD=3.03;ReadPosRankSum=0.537;SOR=0.895;set=HC	GT:AD:AF:DP	0/1:852,131:0.13:983
chr11	1017158	rs36143620	G	T	2457.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.749;ClippingRankSum=0.000;DB;DP=989;ExcessHet=3.0103;FS=0.822;MLEAC=1;MLEAF=0.500;MQ=59.18;MQRankSum=-4.758;QD=2.51;ReadPosRankSum=1.027;SOR=0.891;set=HC	GT:AD:AF:DP	0/1:858,120:0.12:978
chr11	1017161	rs374837441	C	T	2319.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.906;ClippingRankSum=0.000;DB;DP=964;ExcessHet=3.0103;FS=1.824;MLEAC=1;MLEAF=0.500;MQ=59.14;MQRankSum=-4.947;QD=2.43;ReadPosRankSum=0.929;SOR=0.969;set=HC	GT:AD:AF:DP	0/1:841,112:0.12:953
chr11	1017169	rs200932890	G	A	1726.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.068;ClippingRankSum=0.000;DB;DP=916;ExcessHet=3.0103;FS=4.495;MLEAC=1;MLEAF=0.500;MQ=58.91;MQRankSum=-4.168;QD=1.90;ReadPosRankSum=-1.379;SOR=1.196;set=HC	GT:AD:AF:DP	0/1:809,101:0.11:910
chr11	1017173	rs61869004	G	A	3878.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.666;ClippingRankSum=0.000;DB;DP=908;ExcessHet=3.0103;FS=0.600;MLEAC=1;MLEAF=0.500;MQ=58.76;MQRankSum=-4.713;QD=4.30;ReadPosRankSum=0.463;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:670,233:0.26:903
chr11	1017183	rs34844844	G	T	3611.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.057;ClippingRankSum=0.000;DB;DP=853;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.56;MQRankSum=-0.717;QD=4.26;ReadPosRankSum=2.964;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:624,224:0.26:848
chr11	1017186	rs74579726	A	G	1024.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.160;ClippingRankSum=0.000;DB;DP=836;ExcessHet=3.0103;FS=4.765;MLEAC=1;MLEAF=0.500;MQ=58.48;MQRankSum=-4.310;QD=1.23;ReadPosRankSum=-5.084;SOR=1.344;set=HC	GT:AD:AF:DP	0/1:755,76:0.09:831
chr11	1017220	rs56238842	T	C	13480.77	.	AC=1;AF=0.500;AN=2;DB;DP=611;set=Intersection	GT:AD:AF:DP	0/1:252,358:0.59:610
chr11	1017231	rs35840539	A	G	13411.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.440;ClippingRankSum=0.000;DB;DP=562;ExcessHet=3.0103;FS=2.487;MLEAC=1;MLEAF=0.500;MQ=56.73;MQRankSum=-12.572;QD=23.91;ReadPosRankSum=-2.292;SOR=0.530;set=HC	GT:AD:AF:DP	0/1:233,328:0.58:561
chr11	1017239	rs56386804	C	T	12781.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.886;ClippingRankSum=0.000;DB;DP=538;ExcessHet=3.0103;FS=3.272;MLEAC=1;MLEAF=0.500;MQ=56.60;MQRankSum=-12.741;QD=23.89;ReadPosRankSum=-1.460;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:224,311:0.58:535
chr11	1017240	rs62891761	G	A	11401.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.378;ClippingRankSum=0.000;DB;DP=539;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.59;MQRankSum=-9.155;QD=21.27;ReadPosRankSum=0.142;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:251,285:0.53:536
chr11	1017302	rs35330958	G	C	12348.77	.	AC=1;AF=0.500;AN=2;DB;DP=861;set=Intersection	GT:AD:AF:DP	0/1:541,318:0.37:859
chr11	1017317	rs33943903	G	T	15880.77	.	AC=1;AF=0.500;AN=2;DB;DP=1000;set=Intersection	GT:AD:AF:DP	0/1:587,408:0.41:995
chr11	1017325	rs55903826	A	C	3865.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.337;ClippingRankSum=0.000;DB;DP=1079;ExcessHet=3.0103;FS=2.052;MLEAC=1;MLEAF=0.500;MQ=57.31;MQRankSum=5.499;QD=3.60;ReadPosRankSum=-1.821;SOR=0.585;set=HC	GT:AD:AF:DP	0/1:804,270:0.25:1074
chr11	1017337	rs76686156	TC	CA	20013.77	.	AC=1;AF=0.500;AN=2;DB;DP=1170;JOINED;set=Intersection	GT:AD:AF:DP	0/1:649,516:0.44:1165
chr11	1017384	rs34095361	G	C	4704.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.987;ClippingRankSum=0.000;DB;DP=1235;ExcessHet=3.0103;FS=2.009;MLEAC=1;MLEAF=0.500;MQ=57.90;MQRankSum=-21.622;QD=3.88;ReadPosRankSum=4.331;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:896,316:0.26:1212
chr11	1017421	rs35549382	G	T	18353.77	.	AC=1;AF=0.500;AN=2;DB;DP=1504;set=Intersection	GT:AD:AF:DP	0/1:937,543:0.37:1480
chr11	1017440	rs78729877	C	T	20933.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.826;ClippingRankSum=0.000;DB;DP=1498;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.55;MQRankSum=-12.005;QD=14.13;ReadPosRankSum=-0.510;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:919,562:0.38:1481
chr11	1017443	rs80266715	C	G	21115.77	.	AC=1;AF=0.500;AN=2;DB;DP=1508;set=Intersection	GT:AD:AF:DP	0/1:765,568:0.43:1333
chr11	1017458	.	A	G	1980.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.780;ClippingRankSum=0.000;DP=1423;ExcessHet=3.0103;FS=3.168;MLEAC=1;MLEAF=0.500;MQ=55.54;MQRankSum=-3.958;QD=1.40;ReadPosRankSum=3.390;SOR=1.024;set=HC	GT:AD:AF:DP	0/1:1266,148:0.10:1414
chr11	1017461	rs77216712	G	T	7315.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.069;ClippingRankSum=0.000;DB;DP=1413;ExcessHet=3.0103;FS=1.474;MLEAC=1;MLEAF=0.500;MQ=55.58;MQRankSum=-4.710;QD=5.21;ReadPosRankSum=3.552;SOR=0.815;set=HC	GT:AD:AF:DP	0/1:1150,255:0.18:1405
chr11	1017464	rs112874139	T	C	15289.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.061;ClippingRankSum=0.000;DB;DP=1403;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.61;MQRankSum=-12.644;QD=12.66;ReadPosRankSum=3.271;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:762,446:0.37:1208
chr11	1017466	rs201054567	T	C	9177.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.434;ClippingRankSum=0.000;DB;DP=1393;ExcessHet=3.0103;FS=0.633;MLEAC=1;MLEAF=0.500;MQ=55.66;MQRankSum=-14.445;QD=7.28;ReadPosRankSum=1.251;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:976,285:0.23:1261
chr11	1017467	.	G	A	613.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.836;ClippingRankSum=0.000;DP=1388;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.72;MQRankSum=-2.920;QD=0.44;ReadPosRankSum=-0.922;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:1275,106:0.08:1381
chr11	1017470	rs75533660	G	T	13925.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.304;ClippingRankSum=0.000;DB;DP=1399;ExcessHet=3.0103;FS=0.581;MLEAC=1;MLEAF=0.500;MQ=55.75;MQRankSum=-14.602;QD=10.00;ReadPosRankSum=4.053;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:993,400:0.29:1393
chr11	1017471	.	C	T	2742.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.613;ClippingRankSum=0.000;DP=1395;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.77;MQRankSum=-13.848;QD=1.97;ReadPosRankSum=3.546;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:1233,156:0.11:1389
chr11	1017474	.	G	A	1492.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.662;ClippingRankSum=0.000;DP=1401;ExcessHet=3.0103;FS=0.944;MLEAC=1;MLEAF=0.500;MQ=55.80;MQRankSum=-5.481;QD=1.07;ReadPosRankSum=3.590;SOR=0.789;set=HC	GT:AD:AF:DP	0/1:1271,125:0.09:1396
chr11	1017483	rs79986665	T	G	12097.77	.	AC=1;AF=0.500;AN=2;DB;DP=1403;set=Intersection	GT:AD:AF:DP	0/1:1042,358:0.26:1400
chr11	1017489	.	G	A	265.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.826;ClippingRankSum=0.000;DP=1415;ExcessHet=3.0103;FS=1.070;MLEAC=1;MLEAF=0.500;MQ=55.90;MQRankSum=-7.118;QD=0.19;ReadPosRankSum=2.570;SOR=0.939;set=HC	GT:AD:AF:DP	0/1:1315,98:0.07:1413
chr11	1017495	rs67507057	ATGC	A	2373.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.336;ClippingRankSum=0.000;DB;DP=1422;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.86;MQRankSum=-12.717;QD=1.67;ReadPosRankSum=8.354;SOR=0.785;set=HC	GT:AD:AF:DP	0/1:1268,152:0.11:1420
chr11	1017498	rs76707565	C	G	13905.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-5.153;ClippingRankSum=0.000;DB;DP=1392;ExcessHet=3.0103;FS=5.360;MLEAC=1;MLEAF=0.500;MQ=55.89;MQRankSum=-13.791;QD=11.37;ReadPosRankSum=2.055;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:811,412:0.34:1223
chr11	1017514	rs79037833	A	G	25402.77	.	AC=1;AF=0.500;AN=2;DB;DP=1347;set=Intersection	GT:AD:AF:DP	0/1:680,664:0.49:1344
chr11	1017522	rs199592093	T	G	1261.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.842;ClippingRankSum=0.000;DB;DP=1361;ExcessHet=3.0103;FS=1.639;MLEAC=1;MLEAF=0.500;MQ=56.05;MQRankSum=-6.884;QD=0.93;ReadPosRankSum=2.375;SOR=0.814;set=HC	GT:AD:AF:DP	0/1:1158,200:0.15:1358
chr11	1017529	rs200644196	G	A	1088.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.945;ClippingRankSum=0.000;DB;DP=1382;ExcessHet=3.0103;FS=1.630;MLEAC=1;MLEAF=0.500;MQ=56.20;MQRankSum=-3.728;QD=0.79;ReadPosRankSum=0.677;SOR=0.795;set=HC	GT:AD:AF:DP	0/1:1179,199:0.14:1378
chr11	1017746	rs78848170	T	G	3042.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.451;ClippingRankSum=0.000;DB;DP=1255;ExcessHet=3.0103;FS=5.399;MLEAC=1;MLEAF=0.500;MQ=58.69;MQRankSum=-22.410;QD=2.46;ReadPosRankSum=-1.528;SOR=1.066;set=HC	GT:AD:AF:DP	0/1:1075,164:0.13:1239
chr11	1017755	.	C	T	121.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.669;ClippingRankSum=0.000;DP=1213;ExcessHet=3.0103;FS=2.271;MLEAC=1;MLEAF=0.500;MQ=58.90;MQRankSum=-24.367;QD=0.10;ReadPosRankSum=-0.289;SOR=0.978;set=HC	GT:AD:AF:DP	0/1:1119,86:0.07:1205
chr11	1017756	.	A	G	124.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.812;ClippingRankSum=0.000;DP=1206;ExcessHet=3.0103;FS=2.285;MLEAC=1;MLEAF=0.500;MQ=58.89;MQRankSum=-24.353;QD=0.10;ReadPosRankSum=-0.418;SOR=0.947;set=HC	GT:AD:AF:DP	0/1:1113,85:0.07:1198
chr11	1017757	rs79198757	G	A	133.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.472;ClippingRankSum=0.000;DB;DP=1206;ExcessHet=3.0103;FS=3.932;MLEAC=1;MLEAF=0.500;MQ=58.92;MQRankSum=-24.156;QD=0.11;ReadPosRankSum=-0.253;SOR=1.018;set=HC	GT:AD:AF:DP	0/1:1115,83:0.07:1198
chr11	1017773	rs57384288	G	A	323.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.889;ClippingRankSum=0.000;DB;DP=1107;ExcessHet=3.0103;FS=3.613;MLEAC=1;MLEAF=0.500;MQ=58.99;MQRankSum=-31.543;QD=0.29;ReadPosRankSum=-3.086;SOR=1.263;set=HC	GT:AD:AF:DP	0/1:1013,87:0.08:1100
chr11	1017783	rs36101709	A	G	1336.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.278;ClippingRankSum=0.000;DB;DP=1053;ExcessHet=3.0103;FS=3.419;MLEAC=1;MLEAF=0.500;MQ=59.21;MQRankSum=-25.680;QD=1.28;ReadPosRankSum=-4.190;SOR=1.008;set=HC	GT:AD:AF:DP	0/1:952,95:0.09:1047
chr11	1017789	rs78819924	A	C	2314.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.354;ClippingRankSum=0.000;DB;DP=1018;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.28;MQRankSum=3.799;QD=2.33;ReadPosRankSum=1.849;SOR=0.642;set=HC	GT:AD:AF:DP	0/1:797,198:0.20:995
chr11	1017845	rs74610224	C	G	6106.77	.	AC=1;AF=0.500;AN=2;DB;DP=894;set=Intersection	GT:AD:AF:DP	0/1:673,217:0.24:890
chr11	1017858	rs79583615	A	G	6021.77	.	AC=1;AF=0.500;AN=2;DB;DP=852;set=Intersection	GT:AD:AF:DP	0/1:646,202:0.24:848
chr11	1017883	rs79644784	C	A	854.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.408;ClippingRankSum=0.000;DB;DP=764;ExcessHet=3.0103;FS=2.016;MLEAC=1;MLEAF=0.500;MQ=58.70;MQRankSum=-0.495;QD=1.16;ReadPosRankSum=6.233;SOR=0.517;set=HC	GT:AD:AF:DP	0/1:664,73:0.10:737
chr11	1017891	.	G	T	564.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.253;ClippingRankSum=0.000;DP=727;ExcessHet=3.0103;FS=9.169;MLEAC=1;MLEAF=0.500;MQ=58.46;MQRankSum=-16.962;QD=0.78;ReadPosRankSum=5.890;SOR=1.751;set=HC	GT:AD:AF:DP	0/1:663,62:0.09:725
chr11	1017892	rs75500881	C	G	576.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.238;ClippingRankSum=0.000;DB;DP=710;ExcessHet=3.0103;FS=7.275;MLEAC=1;MLEAF=0.500;MQ=58.47;MQRankSum=-17.165;QD=0.81;ReadPosRankSum=6.020;SOR=1.706;set=HC	GT:AD:AF:DP	0/1:646,62:0.09:708
chr11	1017899	.	A	T	678.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.198;ClippingRankSum=0.000;DP=671;ExcessHet=3.0103;FS=6.696;MLEAC=1;MLEAF=0.500;MQ=58.17;MQRankSum=-15.614;QD=1.01;ReadPosRankSum=6.304;SOR=1.691;set=HC	GT:AD:AF:DP	0/1:607,62:0.09:669
chr11	1017900	rs77920671	G	T	936.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.821;ClippingRankSum=0.000;DB;DP=671;ExcessHet=3.0103;FS=3.295;MLEAC=1;MLEAF=0.500;MQ=58.09;MQRankSum=1.396;QD=1.41;ReadPosRankSum=4.749;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:599,67:0.10:666
chr11	1017917	.	A	T	828.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.414;ClippingRankSum=0.000;DP=623;ExcessHet=3.0103;FS=6.558;MLEAC=1;MLEAF=0.500;MQ=56.72;MQRankSum=-10.943;QD=1.33;ReadPosRankSum=5.161;SOR=1.589;set=HC	GT:AD:AF:DP	0/1:560,62:0.10:622
chr11	1017921	.	C	T	907.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.371;ClippingRankSum=0.000;DP=608;ExcessHet=3.0103;FS=3.249;MLEAC=1;MLEAF=0.500;MQ=56.46;MQRankSum=4.213;QD=1.56;ReadPosRankSum=-0.942;SOR=0.416;set=HC	GT:AD:AF:DP	0/1:521,61:0.10:582
chr11	1017932	.	CA	TG	337.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.568;ClippingRankSum=0.000;DP=570;ExcessHet=3.0103;FS=12.519;JOINED;MLEAC=1;MLEAF=0.500;MQ=55.74;MQRankSum=-6.220;QD=0.59;ReadPosRankSum=-0.666;SOR=1.375;set=HC	GT:AD:AF:DP	0/1:525,44:0.08:569
chr11	1017935	rs138784536	A	G	3318.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.482;ClippingRankSum=0.000;DB;DP=564;ExcessHet=3.0103;FS=1.410;MLEAC=1;MLEAF=0.500;MQ=55.62;MQRankSum=-5.390;QD=6.43;ReadPosRankSum=-1.261;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:407,109:0.21:516
chr11	1017939	.	G	C	404.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.617;ClippingRankSum=0.000;DP=557;ExcessHet=3.0103;FS=11.506;MLEAC=1;MLEAF=0.500;MQ=55.45;MQRankSum=-6.485;QD=0.73;ReadPosRankSum=1.036;SOR=1.282;set=HC	GT:AD:AF:DP	0/1:508,48:0.09:556
chr11	1017941	rs61869007	G	T	562.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.663;ClippingRankSum=0.000;DB;DP=551;ExcessHet=3.0103;FS=9.501;MLEAC=1;MLEAF=0.500;MQ=55.32;MQRankSum=3.944;QD=1.02;ReadPosRankSum=-3.881;SOR=1.134;set=HC	GT:AD:AF:DP	0/1:502,48:0.09:550
chr11	1017945	.	A	G	472.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.206;ClippingRankSum=0.000;DP=532;ExcessHet=3.0103;FS=3.334;MLEAC=1;MLEAF=0.500;MQ=55.26;MQRankSum=4.289;QD=0.89;ReadPosRankSum=-5.837;SOR=0.395;set=HC	GT:AD:AF:DP	0/1:483,48:0.09:531
chr11	1017955	rs113926343	C	T	680.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.427;ClippingRankSum=0.000;DB;DP=494;ExcessHet=3.0103;FS=11.812;MLEAC=1;MLEAF=0.500;MQ=54.86;MQRankSum=-6.654;QD=1.39;ReadPosRankSum=-2.456;SOR=2.107;set=HC	GT:AD:AF:DP	0/1:447,43:0.09:490
chr11	1017963	rs61869008	G	A	2114.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.966;ClippingRankSum=0.000;DB;DP=455;ExcessHet=3.0103;FS=12.535;MLEAC=1;MLEAF=0.500;MQ=54.54;MQRankSum=6.337;QD=4.70;ReadPosRankSum=-1.869;SOR=0.899;set=HC	GT:AD:AF:DP	0/1:372,78:0.17:450
chr11	1017968	rs61869009	T	A	2544.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.596;ClippingRankSum=0.000;DB;DP=450;ExcessHet=3.0103;FS=11.683;MLEAC=1;MLEAF=0.500;MQ=54.45;MQRankSum=6.868;QD=5.73;ReadPosRankSum=-1.216;SOR=0.816;set=HC	GT:AD:AF:DP	0/1:357,87:0.20:444
chr11	1017981	rs61869010	T	A	2996.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.675;ClippingRankSum=0.000;DB;DP=423;ExcessHet=3.0103;FS=11.916;MLEAC=1;MLEAF=0.500;MQ=54.22;MQRankSum=7.834;QD=7.17;ReadPosRankSum=1.337;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:317,101:0.24:418
chr11	1017988	rs112579249	G	T	2243.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.688;ClippingRankSum=0.000;DB;DP=418;ExcessHet=3.0103;FS=6.925;MLEAC=1;MLEAF=0.500;MQ=54.41;MQRankSum=-3.948;QD=5.45;ReadPosRankSum=-0.881;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:296,116:0.28:412
chr11	1018012	rs10751676	T	G	3829.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.617;ClippingRankSum=0.000;DB;DP=480;ExcessHet=3.0103;FS=42.027;MLEAC=1;MLEAF=0.500;MQ=53.90;MQRankSum=-9.032;QD=8.08;ReadPosRankSum=-5.278;SOR=2.286;set=HC	GT:AD:AF:DP	0/1:339,135:0.28:474
chr11	1018024	.	C	G	5551.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.577;ClippingRankSum=0.000;DP=441;ExcessHet=3.0103;FS=5.257;MLEAC=1;MLEAF=0.500;MQ=54.72;MQRankSum=-1.702;QD=12.76;ReadPosRankSum=1.454;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:285,150:0.34:435
chr11	1018025	rs10751677	C	A	10148.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.228;ClippingRankSum=0.000;DB;DP=443;ExcessHet=3.0103;FS=26.201;MLEAC=1;MLEAF=0.500;MQ=54.86;MQRankSum=-11.769;QD=23.22;ReadPosRankSum=-2.684;SOR=1.267;set=HC	GT:AD:AF:DP	0/1:189,248:0.57:437
chr11	1018031	rs10751678	G	A	9516.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.076;ClippingRankSum=0.000;DB;DP=436;ExcessHet=3.0103;FS=25.358;MLEAC=1;MLEAF=0.500;MQ=55.41;MQRankSum=-12.123;QD=22.13;ReadPosRankSum=-1.303;SOR=1.207;set=HC	GT:AD:AF:DP	0/1:204,226:0.53:430
chr11	1018042	rs200364398	A	G	6345.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.416;ClippingRankSum=0.000;DB;DP=443;ExcessHet=3.0103;FS=1.129;MLEAC=1;MLEAF=0.500;MQ=56.00;MQRankSum=-3.103;QD=14.52;ReadPosRankSum=2.438;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:269,168:0.38:437
chr11	1018048	rs12787400	A	G	6608.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.411;ClippingRankSum=0.000;DB;DP=452;ExcessHet=3.0103;FS=1.110;MLEAC=1;MLEAF=0.500;MQ=56.50;MQRankSum=-5.598;QD=15.48;ReadPosRankSum=2.217;SOR=0.617;set=HC	GT:AD:AF:DP	0/1:252,175:0.41:427
chr11	1018059	rs78336072	C	T	6360.77	.	AC=1;AF=0.500;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	0/1:270,178:0.40:448
chr11	1018116	rs10902269	T	G	6417.77	.	AC=1;AF=0.500;AN=2;DB;DP=526;set=Intersection	GT:AD:AF:DP	0/1:332,190:0.36:522
chr11	1018138	rs71454075	T	C	6390.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.099;ClippingRankSum=0.000;DB;DP=528;ExcessHet=3.0103;FS=5.378;MLEAC=1;MLEAF=0.500;MQ=59.65;MQRankSum=-8.802;QD=12.20;ReadPosRankSum=-1.391;SOR=0.949;set=HC	GT:AD:AF:DP	0/1:350,174:0.33:524
chr11	1018144	rs12807084	G	C	6099.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.873;ClippingRankSum=0.000;DB;DP=532;ExcessHet=3.0103;FS=6.566;MLEAC=1;MLEAF=0.500;MQ=59.66;MQRankSum=-8.902;QD=11.55;ReadPosRankSum=-0.824;SOR=1.079;set=HC	GT:AD:AF:DP	0/1:363,165:0.31:528
chr11	1018169	rs77647814	C	G	4651.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.657;ClippingRankSum=0.000;DB;DP=543;ExcessHet=3.0103;FS=4.819;MLEAC=1;MLEAF=0.500;MQ=59.69;MQRankSum=-9.020;QD=8.65;ReadPosRankSum=-2.246;SOR=1.034;set=HC	GT:AD:AF:DP	0/1:399,139:0.26:538
chr11	1018175	rs12418172	A	G	4114.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.928;ClippingRankSum=0.000;DB;DP=544;ExcessHet=3.0103;FS=3.915;MLEAC=1;MLEAF=0.500;MQ=59.61;MQRankSum=-9.016;QD=7.63;ReadPosRankSum=-1.700;SOR=0.939;set=HC	GT:AD:AF:DP	0/1:412,127:0.24:539
chr11	1018182	.	G	T	3524.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.671;ClippingRankSum=0.000;DP=532;ExcessHet=3.0103;FS=3.120;MLEAC=1;MLEAF=0.500;MQ=59.54;MQRankSum=-8.855;QD=6.69;ReadPosRankSum=-1.489;SOR=0.982;set=HC	GT:AD:AF:DP	0/1:414,113:0.21:527
chr11	1018186	.	G	T	3406.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.713;ClippingRankSum=0.000;DP=530;ExcessHet=3.0103;FS=3.272;MLEAC=1;MLEAF=0.500;MQ=59.47;MQRankSum=-9.049;QD=6.49;ReadPosRankSum=-0.524;SOR=0.997;set=HC	GT:AD:AF:DP	0/1:423,102:0.19:525
chr11	1018192	.	C	T	2762.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.204;ClippingRankSum=0.000;DP=533;ExcessHet=3.0103;FS=3.346;MLEAC=1;MLEAF=0.500;MQ=59.31;MQRankSum=-8.290;QD=5.23;ReadPosRankSum=-0.600;SOR=1.040;set=HC	GT:AD:AF:DP	0/1:432,96:0.18:528
chr11	1018196	.	A	T	2393.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.805;ClippingRankSum=0.000;DP=530;ExcessHet=3.0103;FS=4.670;MLEAC=1;MLEAF=0.500;MQ=59.26;MQRankSum=-8.391;QD=4.56;ReadPosRankSum=-0.320;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:436,89:0.17:525
chr11	1018215	.	G	GCA	1907.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.824;ClippingRankSum=0.000;DP=491;ExcessHet=3.0103;FS=5.018;MLEAC=1;MLEAF=0.500;MQ=58.99;MQRankSum=-10.849;QD=3.97;ReadPosRankSum=-1.301;SOR=1.262;set=HC	GT:AD:AF:DP	0/1:410,71:0.15:481
chr11	1018218	.	T	G	1043.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.676;ClippingRankSum=0.000;DP=478;ExcessHet=3.0103;FS=16.573;MLEAC=1;MLEAF=0.500;MQ=58.91;MQRankSum=-10.743;QD=2.20;ReadPosRankSum=1.331;SOR=2.344;set=HC	GT:AD:AF:DP	0/1:419,55:0.12:474
chr11	1018220	.	T	A	1475.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=10.208;ClippingRankSum=0.000;DP=470;ExcessHet=3.0103;FS=14.429;MLEAC=1;MLEAF=0.500;MQ=58.89;MQRankSum=-11.835;QD=3.17;ReadPosRankSum=-0.384;SOR=2.031;set=HC	GT:AD:AF:DP	0/1:403,63:0.14:466
chr11	1018222	.	AAT	A	968.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.213;ClippingRankSum=0.000;DP=480;ExcessHet=3.0103;FS=16.467;MLEAC=1;MLEAF=0.500;MQ=58.76;MQRankSum=-11.346;QD=2.10;ReadPosRankSum=0.764;SOR=2.268;set=HC	GT:AD:AF:DP	0/1:408,54:0.12:462
chr11	1018226	.	T	G	1883.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.711;ClippingRankSum=0.000;DP=470;ExcessHet=3.0103;FS=11.044;MLEAC=1;MLEAF=0.500;MQ=58.70;MQRankSum=-15.088;QD=4.04;ReadPosRankSum=0.566;SOR=1.576;set=HC	GT:AD:AF:DP	0/1:391,75:0.16:466
chr11	1018229	rs77630889	C	G	2078.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.341;ClippingRankSum=0.000;DB;DP=457;ExcessHet=3.0103;FS=12.536;MLEAC=1;MLEAF=0.500;MQ=58.63;MQRankSum=-15.039;QD=4.59;ReadPosRankSum=0.289;SOR=1.669;set=HC	GT:AD:AF:DP	0/1:378,75:0.17:453
chr11	1018232	rs113063572	G	T	2855.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.129;ClippingRankSum=0.000;DB;DP=458;ExcessHet=3.0103;FS=6.687;MLEAC=1;MLEAF=0.500;MQ=58.58;MQRankSum=-16.617;QD=6.29;ReadPosRankSum=-1.757;SOR=1.302;set=HC	GT:AD:AF:DP	0/1:361,93:0.20:454
chr11	1018237	rs79892432	GT	AG	3017.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.228;ClippingRankSum=0.000;DB;DP=449;ExcessHet=3.0103;FS=6.518;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.45;MQRankSum=-16.547;QD=6.78;ReadPosRankSum=-2.143;SOR=1.243;set=HC	GT:AD:AF:DP	0/1:349,96:0.22:445
chr11	1018245	rs76423553	TT	GC	3373.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.276;ClippingRankSum=0.000;DB;DP=433;ExcessHet=3.0103;FS=6.276;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.35;MQRankSum=-16.244;QD=7.86;ReadPosRankSum=-1.879;SOR=1.133;set=HC	GT:AD:AF:DP	0/1:332,97:0.23:429
chr11	1018255	.	A	T	161.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.254;ClippingRankSum=0.000;DP=443;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.81;MQRankSum=-8.537;QD=0.37;ReadPosRankSum=2.181;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:405,33:0.08:438
chr11	1018256	.	T	G	455.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.699;ClippingRankSum=0.000;DP=442;ExcessHet=3.0103;FS=19.446;MLEAC=1;MLEAF=0.500;MQ=57.81;MQRankSum=-9.315;QD=1.04;ReadPosRankSum=-0.519;SOR=3.003;set=HC	GT:AD:AF:DP	0/1:396,41:0.09:437
chr11	1018266	.	G	A	405.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.194;ClippingRankSum=0.000;DP=440;ExcessHet=3.0103;FS=19.338;MLEAC=1;MLEAF=0.500;MQ=57.46;MQRankSum=-8.520;QD=0.93;ReadPosRankSum=-1.232;SOR=2.853;set=HC	GT:AD:AF:DP	0/1:396,39:0.09:435
chr11	1018272	.	C	G	318.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.550;ClippingRankSum=0.000;DP=422;ExcessHet=3.0103;FS=9.361;MLEAC=1;MLEAF=0.500;MQ=57.19;MQRankSum=-7.173;QD=0.76;ReadPosRankSum=-0.433;SOR=1.833;set=HC	GT:AD:AF:DP	0/1:380,37:0.09:417
chr11	1018275	rs200995469	G	A	213.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.700;ClippingRankSum=0.000;DB;DP=420;ExcessHet=3.0103;FS=1.019;MLEAC=1;MLEAF=0.500;MQ=57.06;MQRankSum=-7.592;QD=0.51;ReadPosRankSum=3.614;SOR=0.865;set=HC	GT:AD:AF:DP	0/1:382,34:0.08:416
chr11	1018279	rs201852389	C	T	1797.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.769;ClippingRankSum=0.000;DB;DP=418;ExcessHet=3.0103;FS=24.697;MLEAC=1;MLEAF=0.500;MQ=57.00;MQRankSum=-12.619;QD=4.77;ReadPosRankSum=3.111;SOR=1.883;set=HC	GT:AD:AF:DP	0/1:314,63:0.17:377
chr11	1018281	.	C	A	378.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.009;ClippingRankSum=0.000;DP=420;ExcessHet=3.0103;FS=9.089;MLEAC=1;MLEAF=0.500;MQ=56.87;MQRankSum=-7.135;QD=0.91;ReadPosRankSum=1.646;SOR=1.767;set=HC	GT:AD:AF:DP	0/1:378,38:0.09:416
chr11	1018289	rs77222781	C	T	198.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-3.818;ClippingRankSum=0.000;DB;DP=425;ExcessHet=3.0103;FS=1.003;MLEAC=1;MLEAF=0.500;MQ=56.78;MQRankSum=-7.199;QD=0.47;ReadPosRankSum=3.367;SOR=0.803;set=HC	GT:AD:AF:DP	0/1:387,34:0.08:421
chr11	1018290	.	G	C	507.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=4.566;ClippingRankSum=0.000;DP=420;ExcessHet=3.0103;FS=19.884;MLEAC=1;MLEAF=0.500;MQ=56.70;MQRankSum=-8.140;QD=1.31;ReadPosRankSum=3.140;SOR=2.013;set=HC	GT:AD:AF:DP	0/1:348,39:0.10:387
chr11	1018291	.	G	C	3539.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.955;ClippingRankSum=0.000;DP=424;ExcessHet=3.0103;FS=17.203;MLEAC=1;MLEAF=0.500;MQ=56.70;MQRankSum=-13.133;QD=8.43;ReadPosRankSum=4.156;SOR=1.773;set=HC	GT:AD:AF:DP	0/1:317,103:0.25:420
chr11	1018292	.	C	T	267.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=4.813;ClippingRankSum=0.000;DP=422;ExcessHet=3.0103;FS=10.251;MLEAC=1;MLEAF=0.500;MQ=56.69;MQRankSum=-6.284;QD=0.64;ReadPosRankSum=-0.354;SOR=2.048;set=HC	GT:AD:AF:DP	0/1:388,30:0.07:418
chr11	1018295	rs73403297	T	C	2821.77	.	AC=1;AF=0.500;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	0/1:321,93:0.22:414
chr11	1018299	rs200809011	G	A	1830.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.299;ClippingRankSum=0.000;DB;DP=416;ExcessHet=3.0103;FS=9.185;MLEAC=1;MLEAF=0.500;MQ=56.41;MQRankSum=-10.483;QD=4.44;ReadPosRankSum=0.680;SOR=1.540;set=HC	GT:AD:AF:DP	0/1:345,67:0.16:412
chr11	1018303	.	G	A	524.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.660;ClippingRankSum=0.000;DP=415;ExcessHet=3.0103;FS=10.199;MLEAC=1;MLEAF=0.500;MQ=56.25;MQRankSum=-6.466;QD=1.27;ReadPosRankSum=2.824;SOR=1.834;set=HC	GT:AD:AF:DP	0/1:370,42:0.10:412
chr11	1018312	.	G	A	180.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.339;ClippingRankSum=0.000;DP=420;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.33;MQRankSum=-6.597;QD=0.43;ReadPosRankSum=0.286;SOR=0.849;set=HC	GT:AD:AF:DP	0/1:384,33:0.08:417
chr11	1018313	rs75499910	G	T	2112.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.045;ClippingRankSum=0.000;DB;DP=419;ExcessHet=3.0103;FS=20.816;MLEAC=1;MLEAF=0.500;MQ=56.32;MQRankSum=-10.850;QD=5.08;ReadPosRankSum=1.539;SOR=2.197;set=HC	GT:AD:AF:DP	0/1:340,76:0.18:416
chr11	1018321	.	C	T	192.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.533;ClippingRankSum=0.000;DP=411;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.29;MQRankSum=-6.574;QD=0.47;ReadPosRankSum=-2.159;SOR=0.759;set=HC	GT:AD:AF:DP	0/1:376,33:0.08:409
chr11	1018329	.	T	G	936.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.477;ClippingRankSum=0.000;DP=398;ExcessHet=3.0103;FS=18.380;MLEAC=1;MLEAF=0.500;MQ=56.30;MQRankSum=-8.535;QD=2.37;ReadPosRankSum=1.255;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:328,67:0.17:395
chr11	1018340	rs77556339	TG	CA	1928.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.783;ClippingRankSum=0.000;DB;DP=382;ExcessHet=3.0103;FS=29.154;JOINED;MLEAC=1;MLEAF=0.500;MQ=56.31;MQRankSum=-12.137;QD=5.08;ReadPosRankSum=0.440;SOR=1.965;set=HC	GT:AD:AF:DP	0/1:311,69:0.18:380
chr11	1018385	rs7396380	T	A	2916.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.130;ClippingRankSum=0.000;DB;DP=340;ExcessHet=3.0103;FS=3.338;MLEAC=1;MLEAF=0.500;MQ=55.83;MQRankSum=-17.495;QD=8.76;ReadPosRankSum=-0.991;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:241,92:0.28:333
chr11	1018390	rs111785507	C	A	1100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.118;ClippingRankSum=0.000;DB;DP=343;ExcessHet=3.0103;FS=26.125;MLEAC=1;MLEAF=0.500;MQ=55.95;MQRankSum=-12.902;QD=3.31;ReadPosRankSum=1.091;SOR=2.147;set=HC	GT:AD:AF:DP	0/1:285,48:0.14:333
chr11	1018456	rs79920422	G	A	1165.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.854;ClippingRankSum=0.000;DB;DP=313;ExcessHet=3.0103;FS=1.144;MLEAC=1;MLEAF=0.500;MQ=57.88;MQRankSum=-11.278;QD=3.86;ReadPosRankSum=4.623;SOR=0.817;set=HC	GT:AD:AF:DP	0/1:245,57:0.19:302
chr11	1018459	rs199760270	G	T	520.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.463;ClippingRankSum=0.000;DB;DP=314;ExcessHet=3.0103;FS=3.252;MLEAC=1;MLEAF=0.500;MQ=57.89;MQRankSum=-8.017;QD=1.66;ReadPosRankSum=3.036;SOR=0.984;set=HC	GT:AD:AF:DP	0/1:279,34:0.11:313
chr11	1018473	rs112923701	A	T	431.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.425;ClippingRankSum=0.000;DB;DP=331;ExcessHet=3.0103;FS=4.390;MLEAC=1;MLEAF=0.500;MQ=57.97;MQRankSum=-7.985;QD=1.31;ReadPosRankSum=2.356;SOR=1.079;set=HC	GT:AD:AF:DP	0/1:297,33:0.10:330
chr11	1018483	rs78265558	C	G	2079.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.947;ClippingRankSum=0.000;DB;DP=333;ExcessHet=3.0103;FS=1.589;MLEAC=1;MLEAF=0.500;MQ=57.95;MQRankSum=-14.874;QD=6.30;ReadPosRankSum=3.738;SOR=0.829;set=HC	GT:AD:AF:DP	0/1:255,75:0.23:330
chr11	1018496	rs67341709	G	T	1789.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.263;ClippingRankSum=0.000;DB;DP=360;ExcessHet=3.0103;FS=2.246;MLEAC=1;MLEAF=0.500;MQ=58.25;MQRankSum=-15.398;QD=5.01;ReadPosRankSum=2.159;SOR=0.816;set=HC	GT:AD:AF:DP	0/1:286,71:0.20:357
chr11	1018523	rs73403301	A	G	179.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.493;ClippingRankSum=0.000;DB;DP=394;ExcessHet=3.0103;FS=11.281;MLEAC=1;MLEAF=0.500;MQ=58.83;MQRankSum=-14.904;QD=0.47;ReadPosRankSum=-4.949;SOR=1.198;set=HC	GT:AD:AF:DP	0/1:332,52:0.14:384
chr11	1019375	rs9704308	C	T	10783.77	.	AC=2;AF=1.00;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	1/1:0,404:1.00:404
chr11	1023622	rs138887092	G	A	4124.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr11	1027811	rs7481521	C	T	12159.77	.	AC=2;AF=1.00;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	1/1:1,448:1.00:449
chr11	1033240	rs61869016	T	C	2365.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:1,83:0.99:84
chr11	1079532	.	C	CT	1757	.	AC=1;AF=0.500;AN=2;BRF=0.43;FR=0.5000;HP=1;HapScore=1;MGOF=65;MMLQ=28;MQ=47.34;NF=30;NR=3;PP=1757;QD=54.2424242424;SC=GGGACACTCACCACGCCGGGC;SbPval=0.93;Source=Platypus;TC=39;TCF=32;TCR=7;TR=33;WE=1079545;WS=1079524;set=Platypus	GT:AD:AF:DP	0/1:6,33:0.85:39
chr11	1079534	.	ACGCC	A	1928	.	AC=1;AF=0.500;AN=2;BRF=0.43;FR=0.5000;HP=3;HapScore=1;MGOF=65;MMLQ=24;MQ=47.51;NF=29;NR=3;PP=1928;QD=61.28125;SC=GACACTCACCACGCCGGGCAC;SbPval=0.95;Source=Platypus;TC=39;TCF=31;TCR=8;TR=32;WE=1079545;WS=1079524;set=Platypus	GT:AD:AF:DP	0/1:7,32:0.82:39
chr11	1081421	rs181019515	C	T	16536.77	.	AC=2;AF=1.00;AN=2;DB;DP=619;set=Intersection	GT:AD:AF:DP	1/1:0,608:1.00:608
chr11	1086576	.	C	CTG	2957	.	AC=2;AF=1.00;AN=2;BRF=0.56;FR=1.0000;HP=1;HapScore=1;MGOF=5;MMLQ=24;MQ=57.52;NF=7;NR=52;PP=2957;QD=20;SC=GCGGGGCCGACTAAGCAGAGC;SbPval=0.81;Source=Platypus;TC=74;TCF=12;TCR=62;TR=59;WE=1086587;WS=1086566;set=Platypus	GT:AD:AF:DP	1/1:15,59:0.80:74
chr11	1086579	.	A	G	1885	.	AC=2;AF=1.00;AN=2;BRF=0.56;FR=1.0000;HP=1;HapScore=1;MGOF=5;MMLQ=28;MQ=56.88;NF=10;NR=52;PP=1885;QD=30.9640518153;SC=GGGCCGACTAAGCAGAGCAGG;SbPval=0.59;Source=Platypus;TC=65;TCF=11;TCR=54;TR=62;WE=1086587;WS=1086566;set=Platypus	GT:AD:AF:DP	1/1:3,62:0.95:65
chr11	1087410	rs10751639	G	C	8126.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr11	1087972	rs10902088	C	T	23714.77	.	AC=2;AF=1.00;AN=2;DB;DP=1001;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.52;SOR=0.704;set=HC	GT:AD:AF:DP	1/1:0,967:1.00:967
chr11	1091401	.	T	A	1399.73	.	AC=2;AF=1.00;AN=2;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr11	1093393	rs199525790	G	A	4670.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.856;ClippingRankSum=0.000;DB;DP=2675;ExcessHet=3.0103;FS=1.623;MLEAC=1;MLEAF=0.500;MQ=55.79;MQRankSum=0.549;QD=1.85;ReadPosRankSum=8.363;SOR=0.877;set=HC	GT:AD:AF:DP	0/1:2145,379:0.15:2524
chr11	1093430	rs199573018	C	A	6953.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.116;ClippingRankSum=0.000;DB;DP=2271;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.61;MQRankSum=11.757;QD=3.10;ReadPosRankSum=7.326;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:1697,548:0.24:2245
chr11	1093448	.	C	A	1596.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.949;ClippingRankSum=0.000;DP=2135;ExcessHet=3.0103;FS=3.399;MLEAC=1;MLEAF=0.500;MQ=57.44;MQRankSum=-9.486;QD=0.76;ReadPosRankSum=-1.438;SOR=0.982;set=HC	GT:AD:AF:DP	0/1:1901,187:0.09:2088
chr11	1093452	rs34136803	G	A	2995.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.686;ClippingRankSum=0.000;DB;DP=2078;ExcessHet=3.0103;FS=4.085;MLEAC=1;MLEAF=0.500;MQ=57.88;MQRankSum=-15.580;QD=1.63;ReadPosRankSum=-6.665;SOR=1.037;set=HC	GT:AD:AF:DP	0/1:1610,230:0.12:1840
chr11	1093710	rs7944723	C	G	53595.77	.	AC=2;AF=1.00;AN=2;DB;DP=2071;MQ=59.99;set=Intersection	GT:AD:AF:DP	1/1:6,2033:1.00:2039
chr11	1093945	rs7934606	T	C	11752.77	.	AC=2;AF=1.00;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	1/1:0,431:1.00:431
chr11	1094629	rs11245950	T	C	3447.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:1,113:0.99:114
chr11	1094690	rs10794291	C	T	9621.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	1/1:0,348:1.00:348
chr11	1094753	rs10794292	A	C	18191.77	.	AC=2;AF=1.00;AN=2;DB;DP=720;set=Intersection	GT:AD:AF:DP	1/1:4,692:0.99:696
chr11	1095082	rs6597999	A	C	8267.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:3,275:0.99:278
chr11	1096494	rs6421972	T	C	30528.77	.	AC=2;AF=1.00;AN=2;DB;DP=1129;set=Intersection	GT:AD:AF:DP	1/1:0,1114:1.00:1114
chr11	1097975	rs10902090	C	T	12838.77	.	AC=2;AF=1.00;AN=2;DB;DP=484;set=Intersection	GT:AD:AF:DP	1/1:0,472:1.00:472
chr11	1098637	rs12418069	A	G	11024.77	.	AC=2;AF=1.00;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	1/1:4,423:0.99:427
chr11	1098756	rs200767028	G	A	13162.77	.	AC=2;AF=1.00;AN=2;DB;DP=506;set=Intersection	GT:AD:AF:DP	1/1:0,496:1.00:496
chr11	1099410	.	C	T	11278.77	.	AC=2;AF=1.00;AN=2;DP=476;set=Intersection	GT:AD:AF:DP	1/1:3,462:0.99:465
chr11	1100905	rs7396585	G	A	6723.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr11	1101649	rs7480563	T	C	9847.77	.	AC=2;AF=1.00;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	1/1:0,364:1.00:364
chr11	1151695	rs28737416	C	T	7852.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr11	1154073	rs33962059	A	AC	2659.73	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.57;SOR=2.807;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr11	1155289	rs28468624	A	G	8911.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	1/1:2,318:0.99:320
chr11	1157476	rs28707071	C	G	19666.77	.	AC=2;AF=1.00;AN=2;DB;DP=730;set=Intersection	GT:AD:AF:DP	1/1:3,711:1.00:714
chr11	1158073	rs28691231	T	C	22746.77	.	AC=2;AF=1.00;AN=2;DB;DP=861;set=Intersection	GT:AD:AF:DP	1/1:1,857:1.00:858
chr11	1159150	rs28542750	A	T	6103.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr11	1161201	rs28653550	G	A	4999.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr11	1161315	rs28403537	T	C	13036.77	.	AC=2;AF=1.00;AN=2;DB;DP=494;set=Intersection	GT:AD:AF:DP	1/1:0,486:1.00:486
chr11	1161335	rs28663568	T	G	13370.77	.	AC=2;AF=1.00;AN=2;DB;DP=515;set=Intersection	GT:AD:AF:DP	1/1:0,506:1.00:506
chr11	1161477	rs28464760	G	C	7294.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr11	1161713	rs28404876	G	C	4122.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr11	1213204	rs72479396	C	G	173853.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.848;ClippingRankSum=0.000;DB;DP=7281;ExcessHet=3.0103;FS=0.539;MLEAC=1;MLEAF=0.500;MQ=59.70;MQRankSum=-9.988;QD=24.27;ReadPosRankSum=4.744;SOR=0.618;set=HC	GT:AD:AF:DP	0/1:2666,4497:0.63:7163
chr11	1213209	rs377214284	TG	CA	47696.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.641;ClippingRankSum=0.000;DB;DP=7196;ExcessHet=3.0103;FS=0.638;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.75;MQRankSum=-10.492;QD=6.73;ReadPosRankSum=2.800;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:5535,1548:0.22:7083
chr11	1213245	rs67624660	T	A	169872.77	.	AC=1;AF=0.500;AN=2;DB;DP=6461;set=Intersection	GT:AD:AF:DP	0/1:2132,4237:0.67:6369
chr11	1213256	rs370028072	C	T	28905.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.979;ClippingRankSum=0.000;DB;DP=6166;ExcessHet=3.0103;FS=0.635;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.000;QD=4.76;ReadPosRankSum=1.848;SOR=0.777;set=HC	GT:AD:AF:DP	0/1:4755,1312:0.22:6067
chr11	1213257	rs76779582	T	C	169034.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.885;ClippingRankSum=0.000;DB;DP=6091;ExcessHet=3.0103;FS=0.549;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.000;QD=28.16;ReadPosRankSum=3.701;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:2025,3977:0.66:6002
chr11	1213259	rs75991767	T	G	166219.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.856;ClippingRankSum=0.000;DB;DP=6044;ExcessHet=3.0103;FS=0.556;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.000;QD=27.91;ReadPosRankSum=3.053;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:1988,3968:0.67:5956
chr11	1213264	rs72846341	G	A	164450.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.375;ClippingRankSum=0.000;DB;DP=5934;ExcessHet=3.0103;FS=0.555;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.000;QD=28.11;ReadPosRankSum=3.061;SOR=0.625;set=HC	GT:AD:AF:DP	0/1:1923,3927:0.67:5850
chr11	1213272	rs78252457	A	C	162097.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.266;ClippingRankSum=0.000;DB;DP=5878;ExcessHet=3.0103;FS=1.180;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.000;QD=27.96;ReadPosRankSum=4.699;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:1897,3900:0.67:5797
chr11	1213275	rs71251383	G	A	15703.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.241;ClippingRankSum=0.000;DB;DP=5799;ExcessHet=3.0103;FS=0.638;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.000;QD=2.75;ReadPosRankSum=2.478;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:4458,1252:0.22:5710
chr11	1213281	rs75618268	C	T	160388.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.481;ClippingRankSum=0.000;DB;DP=5711;ExcessHet=3.0103;FS=0.566;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.000;QD=28.50;ReadPosRankSum=3.398;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:1774,3853:0.68:5627
chr11	1213287	rs112774721	G	A	39334.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.840;ClippingRankSum=0.000;DB;DP=5601;ExcessHet=3.0103;FS=0.632;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.000;QD=7.13;ReadPosRankSum=-0.126;SOR=0.764;set=HC	GT:AD:AF:DP	0/1:4255,1261:0.23:5516
chr11	1213293	rs77207494	C	T	98855.77	.	AC=1;AF=0.500;AN=2;DB;DP=5552;set=Intersection	GT:AD:AF:DP	0/1:2952,2519:0.46:5471
chr11	1213314	rs73395695	C	T	90417.77	.	AC=1;AF=0.500;AN=2;DB;DP=5431;set=Intersection	GT:AD:AF:DP	0/1:2812,2526:0.47:5338
chr11	1213405	rs67262263	G	A	45298.77	.	AC=1;AF=0.500;AN=2;DB;DP=4802;set=Intersection	GT:AD:AF:DP	0/1:2594,2158:0.45:4752
chr11	1213416	rs78511643	G	A	43373.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.201;ClippingRankSum=0.000;DB;DP=4496;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.74;ReadPosRankSum=0.126;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:2407,2047:0.46:4454
chr11	1213424	rs61867531	A	G	131974.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.583;ClippingRankSum=0.000;DB;DP=4264;ExcessHet=3.0103;FS=2.162;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=31.23;ReadPosRankSum=3.199;SOR=0.909;set=HC	GT:AD:AF:DP	0/1:920,3306:0.78:4226
chr11	1213428	rs61867532	T	C	135209.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.854;ClippingRankSum=0.000;DB;DP=4182;ExcessHet=3.0103;FS=2.164;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=32.56;ReadPosRankSum=3.812;SOR=0.910;set=HC	GT:AD:AF:DP	0/1:927,3226:0.78:4153
chr11	1213440	rs61867533	T	C	115815.77	.	AC=1;AF=0.500;AN=2;DB;DP=3909;set=Intersection	GT:AD:AF:DP	0/1:905,2969:0.77:3874
chr11	1213461	rs61867534	T	G	36325.77	.	AC=1;AF=0.500;AN=2;DB;DP=3466;set=Intersection	GT:AD:AF:DP	0/1:1346,1624:0.55:2970
chr11	1213533	rs73395699	C	T	25891.77	.	AC=1;AF=0.500;AN=2;DB;DP=2542;set=Intersection	GT:AD:AF:DP	0/1:1176,1233:0.51:2409
chr11	1213564	.	C	CA	4934.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=6.675;ClippingRankSum=0.000;DP=2077;ExcessHet=3.0103;FS=93.866;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.000;QD=2.74;ReadPosRankSum=4.141;SOR=10.936;set=HC	GT:AD:AF:DP	0/1:1563,236:0.13:1799
chr11	1213565	.	C	CATGACCTCCACACCT	4873.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=26.187;ClippingRankSum=0.000;DP=1931;ExcessHet=3.0103;FS=90.609;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.000;QD=2.70;ReadPosRankSum=3.547;SOR=10.919;set=HC	GT:AD:AF:DP	0/1:1568,234:0.13:1802
chr11	1213567	.	G	GCTCCACCTCTAGCAGTCCAGCCCAGACCACTCCTTCAACAACCTCCAAGACCAC	4869.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=20.196;ClippingRankSum=0.000;DP=1885;ExcessHet=3.0103;FS=82.740;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.000;QD=2.77;ReadPosRankSum=1.204;SOR=10.546;set=HC	GT:AD:AF:DP	0/1:1562,194:0.11:1756
chr11	1213897	rs79604368	A	T	8474.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr11	1214571	.	G	A	1812.77	.	AC=2;AF=1.00;AN=2;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr11	1214924	rs2075841	C	T	4179.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr11	1215271	rs71025716	GA	G	4816.73	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr11	1215580	rs1132433	A	G	15148.77	.	AC=2;AF=1.00;AN=2;DB;DP=579;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.44;SOR=0.937;set=HC	GT:AD:AF:DP	1/1:0,573:1.00:573
chr11	1215698	rs28452143	A	G	18779.77	.	AC=2;AF=1.00;AN=2;DB;DP=710;set=Intersection	GT:AD:AF:DP	1/1:3,698:1.00:701
chr11	1216316	rs58550179	G	GC	33764.73	.	AC=2;AF=1.00;AN=2;DB;DP=764;set=Intersection	GT:AD:AF:DP	1/1:0,743:1.00:743
chr11	1216333	rs60138698	TA	T	34228.73	.	AC=2;AF=1.00;AN=2;DB;DP=773;set=Intersection	GT:AD:AF:DP	1/1:0,764:1.00:764
chr11	1217084	rs28652890	T	C	5287.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:5,218:0.98:223
chr11	1217228	rs28592983	T	C	15702.77	.	AC=2;AF=1.00;AN=2;DB;DP=611;set=Intersection	GT:AD:AF:DP	1/1:2,599:1.00:601
chr11	1218128	rs28503875	G	A	13316.77	.	AC=2;AF=1.00;AN=2;DB;DP=512;set=Intersection	GT:AD:AF:DP	1/1:0,497:1.00:497
chr11	1218613	rs28668687	A	G	946.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr11	1218631	rs28429550	C	G	1265.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr11	1219118	rs28742281	T	C	3042.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr11	1219632	rs2075843	G	A	18319.77	.	AC=2;AF=1.00;AN=2;DB;DP=676;set=Intersection	GT:AD:AF:DP	1/1:2,669:1.00:671
chr11	1220599	rs28633254	T	C	6636.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr11	1220760	rs28514396	T	C	8580.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr11	1220796	rs28502687	T	C	5603.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr11	1220997	rs28457780	G	A	22283.77	.	AC=2;AF=1.00;AN=2;DB;DP=829;set=Intersection	GT:AD:AF:DP	1/1:0,823:1.00:823
chr11	1221038	rs28439383	C	T	31700.77	.	AC=2;AF=1.00;AN=2;DB;DP=1194;set=Intersection	GT:AD:AF:DP	1/1:4,1179:1.00:1183
chr11	1221305	rs2075844	A	G	2854.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr11	1221592	rs28728088	T	C	1208.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr11	1248197	rs908224	G	T	1954.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.42;SOR=2.062;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr11	1248491	rs908223	T	G	12644.77	.	AC=2;AF=1.00;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	1/1:1,453:1.00:454
chr11	1248731	rs2075854	A	G	7041.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr11	1252047	rs2672807	T	C	4200.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr11	1253942	rs908229	T	C	3166.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.045;ClippingRankSum=0.000;DB;DP=771;ExcessHet=3.0103;FS=2.049;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.13;ReadPosRankSum=1.149;SOR=0.915;set=HC	GT:AD:AF:DP	0/1:561,205:0.27:766
chr11	1253969	rs72846370	A	G	4511.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.716;ClippingRankSum=0.000;DB;DP=597;ExcessHet=3.0103;FS=1.327;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.61;ReadPosRankSum=-3.937;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:445,148:0.25:593
chr11	1253976	rs76956995	A	G	4119.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.359;ClippingRankSum=0.000;DB;DP=549;ExcessHet=3.0103;FS=6.384;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.55;ReadPosRankSum=-4.233;SOR=0.359;set=HC	GT:AD:AF:DP	0/1:424,122:0.22:546
chr11	1253980	rs202127660	A	G	3644.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.112;ClippingRankSum=0.000;DB;DP=520;ExcessHet=3.0103;FS=9.272;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.05;ReadPosRankSum=-5.273;SOR=0.536;set=HC	GT:AD:AF:DP	0/1:402,115:0.22:517
chr11	1258175	rs80092233	C	T	9759.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.679;ClippingRankSum=0.000;DB;DP=1389;ExcessHet=3.0103;FS=22.641;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=7.26;ReadPosRankSum=-9.186;SOR=2.149;set=HC	GT:AD:AF:DP	0/1:1048,297:0.22:1345
chr11	1258192	rs76589014	AT	TC	12085.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.208;ClippingRankSum=0.000;DB;DP=1521;ExcessHet=3.0103;FS=15.353;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=8.17;ReadPosRankSum=-1.351;SOR=1.724;set=HC	GT:AD:AF:DP	0/1:1117,363:0.25:1480
chr11	1258197	rs78674028	A	G	12688.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.617;ClippingRankSum=0.000;DB;DP=1525;ExcessHet=3.0103;FS=13.368;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=8.52;ReadPosRankSum=0.177;SOR=1.584;set=HC	GT:AD:AF:DP	0/1:1114,375:0.25:1489
chr11	1258199	rs80200632	C	T	13599.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.038;ClippingRankSum=0.000;DB;DP=1526;ExcessHet=3.0103;FS=11.545;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=9.13;ReadPosRankSum=0.512;SOR=1.529;set=HC	GT:AD:AF:DP	0/1:1109,381:0.26:1490
chr11	1258217	rs74648489	T	G	15544.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.672;ClippingRankSum=0.000;DB;DP=1492;ExcessHet=3.0103;FS=9.331;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.60;ReadPosRankSum=2.028;SOR=1.341;set=HC	GT:AD:AF:DP	0/1:1029,438:0.30:1467
chr11	1258226	rs55700357	C	T	16156.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.040;ClippingRankSum=0.000;DB;DP=1450;ExcessHet=3.0103;FS=9.087;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.31;ReadPosRankSum=3.564;SOR=1.264;set=HC	GT:AD:AF:DP	0/1:987,441:0.31:1428
chr11	1258240	rs77287508	CA	TG	15890.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.704;ClippingRankSum=0.000;DB;DP=1329;ExcessHet=3.0103;FS=7.615;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.12;ReadPosRankSum=3.737;SOR=1.212;set=HC	GT:AD:AF:DP	0/1:873,438:0.33:1311
chr11	1258283	rs78669250	G	A	15442.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.948;ClippingRankSum=0.000;DB;DP=1058;ExcessHet=3.0103;FS=4.224;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.65;ReadPosRankSum=-0.060;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:639,415:0.39:1054
chr11	1258286	rs77996005	C	T	15603.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.504;ClippingRankSum=0.000;DB;DP=1036;ExcessHet=3.0103;FS=3.336;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.11;ReadPosRankSum=-0.713;SOR=0.980;set=HC	GT:AD:AF:DP	0/1:620,413:0.40:1033
chr11	1258295	rs79118814	A	G	14363.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.858;ClippingRankSum=0.000;DB;DP=951;ExcessHet=3.0103;FS=2.533;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.15;ReadPosRankSum=-0.282;SOR=0.907;set=HC	GT:AD:AF:DP	0/1:573,375:0.40:948
chr11	1258429	.	G	C	3574.77	.	AC=2;AF=1.00;AN=2;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr11	1260145	rs75799984	T	C	1956.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.200;ClippingRankSum=0.000;DB;DP=714;ExcessHet=3.0103;FS=30.229;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.000;QD=2.79;ReadPosRankSum=-6.492;SOR=2.131;set=HC	GT:AD:AF:DP	0/1:548,153:0.22:701
chr11	1260157	rs78678736	G	C	5168.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.131;ClippingRankSum=0.000;DB;DP=726;ExcessHet=3.0103;FS=22.188;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=-1.856;QD=7.25;ReadPosRankSum=-1.120;SOR=1.856;set=HC	GT:AD:AF:DP	0/1:553,160:0.22:713
chr11	1260160	rs78177850	T	G	5153.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.406;ClippingRankSum=0.000;DB;DP=729;ExcessHet=3.0103;FS=22.068;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=-1.835;QD=7.18;ReadPosRankSum=-0.537;SOR=1.767;set=HC	GT:AD:AF:DP	0/1:554,164:0.23:718
chr11	1260163	rs79220674	C	T	5149.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.894;ClippingRankSum=0.000;DB;DP=718;ExcessHet=3.0103;FS=19.652;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=-1.838;QD=7.28;ReadPosRankSum=0.130;SOR=1.723;set=HC	GT:AD:AF:DP	0/1:546,161:0.23:707
chr11	1260175	rs75760167	T	C	2500.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.158;ClippingRankSum=0.000;DB;DP=685;ExcessHet=3.0103;FS=19.691;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=-1.816;QD=3.69;ReadPosRankSum=1.115;SOR=1.659;set=HC	GT:AD:AF:DP	0/1:520,157:0.23:677
chr11	1260193	rs74763753	T	C	1989.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.284;ClippingRankSum=0.000;DB;DP=622;ExcessHet=3.0103;FS=15.739;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-1.805;QD=3.24;ReadPosRankSum=-0.794;SOR=1.494;set=HC	GT:AD:AF:DP	0/1:471,144:0.23:615
chr11	1260214	rs79585387	C	T	2777.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.366;ClippingRankSum=0.000;DB;DP=537;ExcessHet=3.0103;FS=5.581;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-2.942;QD=5.21;ReadPosRankSum=-3.437;SOR=1.080;set=HC	GT:AD:AF:DP	0/1:433,100:0.19:533
chr11	1260217	rs79638064	C	A	2712.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.886;ClippingRankSum=0.000;DB;DP=536;ExcessHet=3.0103;FS=3.396;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-3.029;QD=5.11;ReadPosRankSum=-3.430;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:436,95:0.18:531
chr11	1260219	rs75935363	C	T	2639.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.273;ClippingRankSum=0.000;DB;DP=525;ExcessHet=3.0103;FS=3.396;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-3.050;QD=5.08;ReadPosRankSum=-3.968;SOR=0.955;set=HC	GT:AD:AF:DP	0/1:428,92:0.18:520
chr11	1260220	.	G	A	2582.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.946;ClippingRankSum=0.000;DP=523;ExcessHet=3.0103;FS=2.423;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-3.063;QD=4.99;ReadPosRankSum=-4.106;SOR=0.927;set=HC	GT:AD:AF:DP	0/1:427,91:0.18:518
chr11	1304706	rs3838783	TG	T	1993.73	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr11	1309956	rs3750920	C	T	18378.77	.	AC=2;AF=1.00;AN=2;DB;DP=706;set=Intersection	GT:AD:AF:DP	1/1:1,698:1.00:699
chr11	1432659	.	C	T	1796.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.265;ClippingRankSum=0.000;DP=462;ExcessHet=3.0103;FS=0.605;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.94;ReadPosRankSum=0.779;SOR=0.601;set=HC	GT:AD:AF:DP	0/1:337,119:0.26:456
chr11	1432691	rs61868960	T	C	14596.77	.	AC=2;AF=1.00;AN=2;DB;DP=557;set=Intersection	GT:AD:AF:DP	1/1:2,547:1.00:549
chr11	1464903	rs56896587	CG	C	5916.73	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr11	1467154	.	G	T	6249.77	.	AC=2;AF=1.00;AN=2;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr11	1471154	rs11028332	C	T	6081.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr11	1472050	rs61869028	A	G	7350.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr11	1472475	rs3838784	TG	T	7929.73	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:2,260:0.99:262
chr11	1477797	rs61869032	C	T	17532.77	.	AC=2;AF=1.00;AN=2;DB;DP=660;set=Intersection	GT:AD:AF:DP	1/1:0,644:1.00:644
chr11	1481610	rs28555282	T	C	648.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr11	1481690	rs150300634	CCTT	C	1136.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.909;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=2.762;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.44;ReadPosRankSum=1.465;SOR=0.255;set=HC	GT:AD:AF:DP	1/1:4,39:0.91:43
chr11	1481930	rs4963048	A	G	865.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.85;SOR=2.226;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr11	1490643	rs71025733	TG	T	70.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.165;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=1.564;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.41;ReadPosRankSum=-1.664;SOR=0.387;set=HC	GT:AD:AF:DP	0/1:41,9:0.18:50
chr11	1491096	rs9440	G	A	9315.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	1/1:0,343:1.00:343
chr11	1492445	rs4881724	A	G	2374.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:1,78:0.99:79
chr11	1501670	rs10742185	G	C	6296.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr11	1502097	rs10767696	A	G	2250.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:2,86:0.98:88
chr11	1502401	rs4881735	A	C	3885.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr11	1507512	rs1881502	T	C	1338.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr11	1507731	rs1881503	A	G	7346.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.96;SOR=0.953;set=HC	GT:AD:AF:DP	1/1:0,283:1.00:283
chr11	1509238	rs2334554	T	C	10535.77	.	AC=2;AF=1.00;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	1/1:0,405:1.00:405
chr11	1509421	rs2334553	G	A	1249.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr11	1576235	rs6578504	T	C	663.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr11	1576501	rs76782264	T	A	2394.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr11	1628844	rs1989592	A	G	7641.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr11	1630342	rs10837527	T	A	1192.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr11	1651226	.	T	TGGAG	3072.73	.	AC=2;AF=1.00;AN=2;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.93;SOR=1.058;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr11	1651228	.	C	CTGTGGGGGCTGTGGCTCCGGCTGTGG	3959.73	.	AC=2;AF=1.00;AN=2;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.00;SOR=0.997;set=HC	GT:AD:AF:DP	1/1:0,88:1.00:88
chr11	1651352	rs75391124	C	T	2060.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.56;QD=24.53;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr11	1651585	.	CCTGCTGCCAGTCCAGCTGCTGTAAGCCTTA	C	9349.73	.	AC=2;AF=1.00;AN=2;DP=294;set=Intersection	GT:AD:AF:DP	1/1:1,249:1.00:250
chr11	1756681	rs7943617	G	A	1604.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr11	1770224	rs111693235	C	G	3962.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.621;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.77;ReadPosRankSum=-0.759;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:2,158:0.99:160
chr11	1771797	rs3740621	T	C	6646.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:2,253:0.99:255
chr11	1776024	rs55725229	TC	T	1762.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr11	1853107	rs616594	C	T	4561.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr11	1853121	rs867839	C	T	4515.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr11	1855854	rs2063551	G	C	3975.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr11	1857173	rs564271	T	C	4370.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr11	1861760	rs907610	T	C	2797.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr11	1887806	rs7938342	T	A	5589.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr11	1890810	rs501124	G	A	1768.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr11	1890990	rs592373	G	A	1860.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.14;QD=24.48;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr11	1891035	rs61278563	G	GA	1359.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr11	1901467	rs2271439	A	C	1694.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr11	1902635	rs536462	G	T	3171.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr11	1910707	rs613638	T	C	3780.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr11	1911115	rs11041692	T	C	3278.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:2,127:0.98:129
chr11	1944050	rs370860604	CCT	C	75.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.771;ClippingRankSum=0.000;DB;DP=429;ExcessHet=3.0103;FS=0.655;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.18;ReadPosRankSum=-0.103;SOR=0.786;set=HC	GT:AD:AF:DP	0/1:370,45:0.11:415
chr11	1944202	rs965912	A	G	7440.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr11	1944636	rs2734500	A	T	2019.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:1,64:0.98:65
chr11	1947789	rs6578952	G	A	6120.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:1,219:1.00:220
chr11	1947800	rs7937265	C	G	6041.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr11	1948186	rs7125631	T	C	929.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr11	1950302	rs629990	A	G	10378.77	.	AC=2;AF=1.00;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	1/1:0,390:1.00:390
chr11	1950906	rs2292473	T	G	2818.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr11	1950925	rs2292471	T	C	3049.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr11	1956212	rs513735	T	C	7456.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:2,273:0.99:275
chr11	1961701	.	TCTCACA	T,TCA	647.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=35;set=Intersection	GT:AF:DP	1/2:0.22,0.66:32
chr11	1961869	rs11041941	T	C	3833.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr11	1976988	rs177720	A	G	4078.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr11	1993975	rs190063	C	A	3030.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr11	2016619	rs3741219	A	G	4303.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr11	2016659	rs2839704	T	C	8857.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.96;SOR=0.810;set=HC	GT:AD:AF:DP	1/1:0,197:1.00:197
chr11	2016662	rs2839703	T	C	8857.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.74;SOR=0.798;set=HC	GT:AD:AF:DP	1/1:0,198:1.00:198
chr11	2016924	rs10840159	A	G	2621.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr11	2017017	rs2839702	A	C	3451.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.97;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,128:1.00:128
chr11	2017110	rs2839701	C	G	4617.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr11	2017439	rs3024270	C	G	4340.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:3,151:0.98:154
chr11	2018168	rs2067051	C	T	14128.77	.	AC=2;AF=1.00;AN=2;DB;DP=538;set=Intersection	GT:AD:AF:DP	1/1:0,534:1.00:534
chr11	2018336	rs2075745	A	T	10918.77	.	AC=2;AF=1.00;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	1/1:3,382:0.99:385
chr11	2018374	rs11564733	G	A	10915.77	.	AC=2;AF=1.00;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	1/1:4,402:0.99:406
chr11	2018449	rs2075744	A	G	14902.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.259;ClippingRankSum=0.000;DB;DP=571;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.76;ReadPosRankSum=-1.237;SOR=0.697;set=HC	GT:AD:AF:DP	1/1:4,553:0.99:557
chr11	2018853	rs2839698	G	A	18944.77	.	AC=2;AF=1.00;AN=2;DB;DP=737;set=Intersection	GT:AD:AF:DP	1/1:4,716:0.99:720
chr11	2154964	rs3213232	G	A	815.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr11	2156536	rs3213225	G	A	1428.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:1,54:0.98:55
chr11	2182004	rs5506	A	G	4392.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr11	2182154	rs151134873	G	C	4245.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr11	2186335	rs2070762	A	G	1598.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr11	2187071	rs6578990	T	C	5031.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr11	2187398	rs4072823	T	G	1535.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr11	2187439	rs4072824	C	A	1129.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr11	2188566	rs7925924	C	T	980.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr11	2189185	rs4074905	G	A	2643.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:2,92:0.98:94
chr11	2194175	rs10743149	T	C	3453.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:2,132:0.99:134
chr11	2194420	rs10770142	G	C	1185.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr11	2320884	rs1501466	A	G	3044.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:2,112:0.98:114
chr11	2320966	rs16928081	C	T	1549.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:2,56:0.97:58
chr11	2321059	.	TCTGCACACGCATCCACGCCTGCACACGCATCCATGC	T	2957	.	AC=2;AF=1.00;AN=2;BRF=0.11;FR=1.0000;HP=1;HapScore=1;MGOF=15;MMLQ=23;MQ=62.13;NF=1;NR=7;PP=2957;QD=20;SC=CACATCCACGTCTGCACACGC;SbPval=0.85;Source=Platypus;TC=9;TCF=2;TCR=7;TR=8;WE=2321102;WS=2321049;set=Platypus	GT:AD:AF:DP	1/1:1,8:0.89:9
chr11	2321650	rs2651823	A	G	646.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.95;SOR=3.442;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr11	2321899	rs2285568	C	T	4323.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:3,162:0.98:165
chr11	2323029	rs756924	T	C	12215.77	.	AC=2;AF=1.00;AN=2;DB;DP=451;set=Intersection	GT:AD:AF:DP	1/1:0,448:1.00:448
chr11	2324041	rs2074022	A	G	3896.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr11	2324852	rs2651824	A	C	997.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr11	2330400	rs2521273	G	A	1200.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr11	2330479	rs2521274	G	A	2204.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr11	2330518	rs7108898	G	A	2215.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr11	2330596	rs7112919	C	T	2540.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr11	2337012	rs11022252	G	C	1203.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr11	2337693	rs2234308	G	A	7168.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr11	2356603	rs2651795	T	C	4461.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr11	2356769	rs2651794	T	C	10470.77	.	AC=2;AF=1.00;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	1/1:0,370:1.00:370
chr11	2357108	rs2173888	C	G	1351.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr11	2424684	rs2234283	A	C	3700.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr11	2427211	rs7938864	G	A	6298.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr11	2427291	rs800342	A	C	13589.77	.	AC=2;AF=1.00;AN=2;DB;DP=501;set=Intersection	GT:AD:AF:DP	1/1:0,500:1.00:500
chr11	2432820	rs2651822	A	G	7449.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr11	2542605	rs10400376	TA	GG	5268.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr11	2549329	rs145292450	TGG	T	3617.73	.	AC=2;AF=1.00;AN=2;DB;DP=97;MQ=60.11;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr11	2683177	rs28730758	C	T	6736.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:1,255:1.00:256
chr11	2789856	rs163161	A	G	512.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	2797237	rs1057128	G	A	2634.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:2,97:0.98:99
chr11	2798448	rs163148	A	G	1425.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr11	2909393	rs72850017	G	T	2194.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.875;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.82;MQRankSum=0.000;QD=26.77;ReadPosRankSum=-0.710;SOR=0.853;set=HC	GT:AD:AF:DP	1/1:1,81:0.99:82
chr11	2920666	rs365605	C	T	6400.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr11	2924591	rs1048046	G	A	4045.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr11	2924610	rs1048047	G	A	5105.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr11	2924850	rs34816459	T	TC	2813.73	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr11	2929552	rs429886	A	G	2672.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr11	2930395	rs10832891	G	C	2626.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr11	2930594	rs67769451	CG	C	1304.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr11	2930656	rs2286660	T	G	835.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr11	2930773	rs61871178	G	T	419.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr11	2930987	rs61871179	G	C	1023.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr11	2939392	rs445679	G	A	7585.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr11	2940492	rs450244	T	C	4715.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr11	2943671	rs1129782	G	C	4437.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr11	2943912	rs2411773	G	A	354.78	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.02;QD=39.42;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr11	2943913	rs2411772	T	G	354.78	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.51;QD=44.35;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr11	2943916	rs2411771	A	T	322.78	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.12;QD=53.80;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr11	2943921	rs1618222	A	G	196.90	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.15;QD=39.38;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr11	2979798	rs7940694	G	T	5064.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr11	2991219	rs2071110	C	G	1674.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr11	2999507	rs3814964	G	T	4283.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr11	3026692	rs4758458	T	G	1828.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr11	3027889	rs756693	A	G	2127.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr11	3028140	rs729662	G	A	9038.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,327:1.00:327
chr11	3028270	rs7950766	A	G	1822.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr11	3033594	rs12808132	G	T	1857.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr11	3050210	rs434114	A	G	1519.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr11	3061780	rs399565	C	T	2552.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr11	3061949	rs2285390	C	A	1600.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr11	3061992	rs369461	T	C	1130.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr11	3076018	rs7934892	T	C	189.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr11	3076257	rs7945933	C	T	1607.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:2,62:0.97:64
chr11	3076285	rs406598	G	A	1403.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr11	3109284	rs3217567	G	GC	733.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr11	3109403	rs2289999	A	G	5004.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.10;QD=45.50;SOR=0.888;set=HC	GT:AD:AF:DP	1/1:0,110:1.00:110
chr11	3109408	rs2289998	C	T	5121.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.09;QD=43.78;SOR=0.896;set=HC	GT:AD:AF:DP	1/1:0,117:1.00:117
chr11	3109426	rs10160757	T	C	3429.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr11	3110956	rs895564	C	T	793.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr11	3110976	rs895563	A	G	1025.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr11	3115354	rs9795009	T	C	1487.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr11	3121248	.	C	CAA	115.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.975;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.81;MQRankSum=1.377;QD=4.82;ReadPosRankSum=-0.239;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:9,15:0.62:24
chr11	3128774	rs3741353	T	C	3907.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr11	3249081	rs11026035	G	C	689.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:1,23:0.96:24
chr11	3249253	rs34515898	G	A	3994.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:3,154:0.98:157
chr11	3381843	rs2157763	A	G	1220.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr11	3382069	rs6578335	C	G	3601.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr11	3382215	rs6578336	T	C	527.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr11	3383962	rs10734319	T	C	425.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.61;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr11	3390006	rs7943767	T	C	2847.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr11	3390173	rs1989786	A	T	925.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr11	3390547	rs7925972	G	C	477.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr11	3392351	rs2269735	T	C	7303.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.47;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,168:1.00:168
chr11	3392357	rs2269734	T	G	7075.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.07;SOR=1.238;set=HC	GT:AD:AF:DP	1/1:0,157:1.00:157
chr11	3392972	rs2269732	G	A	8099.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr11	3394894	rs10833820	G	A	8089.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr11	3394960	rs10833821	A	G	5384.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr11	3398760	rs7932709	G	T	1824.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr11	3398795	rs7932797	G	A	2694.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr11	3400334	rs7931660	A	G	2794.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr11	3400422	rs6578342	C	T	877.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr11	3659993	rs2271586	G	T	4596.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr11	3660295	rs1996208	C	T	774.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr11	3661140	rs4910876	T	C	8169.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:2,299:0.99:301
chr11	3661585	rs3062849	A	ATGG	12711.73	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr11	3662892	rs72844325	G	T	954.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr11	3663170	rs7111519	G	C	978.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr11	3663201	rs7128137	A	G	819.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr11	3704775	rs35532049	CT	C	193.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr11	3714311	rs694102	T	A	364.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr11	3714489	rs1875	C	T	3299.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr11	3723569	.	T	A	526.78	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.882;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=27.73;ReadPosRankSum=2.241;SOR=2.200;set=HC	GT:AD:AF:DP	1/1:1,18:0.95:19
chr11	3740588	rs612785	G	T	982.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr11	3742062	rs55821497	C	CA	102.94	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.487;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=4.242;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.68;ReadPosRankSum=-1.610;SOR=1.356;set=HC	GT:AD:AF:DP	0/1:10,12:0.55:22
chr11	3746465	rs276901	C	G	1514.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:2,59:0.97:61
chr11	3789982	rs146552084	GAAAAAGAAAAA	G	994.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr11	3799985	rs188044	G	A	999.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr11	4103524	rs2304891	A	G	1031.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr11	4104060	rs2898950	A	C	1970.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr11	4104087	rs10767828	T	C	2572.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr11	4104319	rs2289571	A	C	3524.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr11	4104355	rs894455	T	C	2387.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr11	4104745	rs2289570	C	G	3607.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr11	4116335	rs12801088	A	C	761.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr11	4123345	rs1348310	C	G	2537.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr11	4123427	rs232054	C	G	1777.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:2,66:0.97:68
chr11	4128845	rs725518	G	A	613.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	4130543	.	C	G	23	.	AC=2;AF=1.00;AN=2;BRF=0.0;FR=0.9998;HP=1;HapScore=2;MGOF=0;MMLQ=28;MQ=60.0;NF=1;NR=1;PP=23;QD=28.8856062736;SC=CCCATTTATGCTCATGTTTTT;SbPval=0.74;Source=Platypus;TC=2;TCF=1;TCR=1;TR=2;WE=4130551;WS=4130533;set=Platypus	GT:AD:AF:DP	1/1:0,2:1.00:2
chr11	4133317	rs56336381	C	A	3249.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr11	4141132	rs183484	C	A	4283.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr11	4150238	rs34530146	G	GT	49.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.217;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.66;ReadPosRankSum=0.539;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:21,9:0.30:30
chr11	4153767	rs10835662	A	G	1398.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr11	4159457	rs9937	A	G	2593.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.50;SOR=1.342;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr11	4159466	rs1042858	G	A	2690.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.71;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr11	4159764	rs1042919	A	T	313.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.15;SOR=2.670;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr11	4159770	rs866902	AT	A	66.87	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr11	4185463	rs979941	T	C	1871.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr11	4185595	rs979942	T	G	3773.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr11	4389404	rs11310407	AG	A	3823.73	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr11	4409386	rs2554933	C	T	560.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr11	4409511	rs12805578	A	G	3731.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr11	4410752	rs2855142	C	T	1593.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr11	4411241	rs926101	C	T	3371.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr11	4411819	rs5030768	T	C	445.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr11	4510285	rs96489	A	G	4496.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:2,167:0.99:169
chr11	4510587	rs331510	C	T	14364.77	.	AC=2;AF=1.00;AN=2;DB;DP=543;set=Intersection	GT:AD:AF:DP	1/1:3,531:0.99:534
chr11	4562831	rs2657172	A	G	1256.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr11	4562947	rs2641414	G	T	1549.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:2,61:0.97:63
chr11	4562970	rs67163911	A	ATTT	2034.73	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:2,49:0.96:51
chr11	4566377	rs2657168	C	T	1578.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr11	4566711	rs2709182	C	T	5348.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr11	4567335	rs2657167	C	G	3999.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:1,149:0.99:150
chr11	4592706	rs141600462	T	TAC	4152.73	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr11	4592923	rs36051772	C	CAAA	106.76	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.282;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=21.35;ReadPosRankSum=-1.282;SOR=1.447;set=HC	GT:AD:AF:DP	0/1:1,4:0.80:5
chr11	4593334	rs34520159	T	A	422.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr11	4593411	rs34097396	G	A	1255.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr11	4594471	rs12793041	G	A	1636.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr11	4594545	rs12795289	A	G	2081.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr11	4608242	rs61744242	T	C	5297.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.765;ClippingRankSum=0.000;DB;DP=223;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.08;MQRankSum=0.514;QD=24.08;ReadPosRankSum=3.561;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:26,194:0.88:220
chr11	4615390	rs2010722	C	T	4260.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=3.529;MLEAC=2;MLEAF=1.000;MQ=47.30;MQRankSum=-2.063;QD=28.41;ReadPosRankSum=-0.269;SOR=2.271;set=HC	GT:AD:AF:DP	1/1:2,148:0.99:150
chr11	4615508	rs2010719	C	G	6882.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:2,266:0.99:268
chr11	4621485	rs2231978	C	G	363.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr11	4621639	rs2231975	C	T	2862.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr11	4623106	rs999818	T	C	430.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr11	4623315	rs2231969	C	T	908.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr11	4703165	rs1123991	C	A	7039.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr11	4729650	rs7122597	G	A	1669.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr11	4730985	rs4619142	C	T	11169.77	.	AC=2;AF=1.00;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	1/1:0,407:1.00:407
chr11	4731180	rs4432013	G	A	8813.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,323:1.00:323
chr11	4731468	rs4436535	G	A	5793.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr11	4731583	rs4471413	C	T	7176.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr11	4824878	rs2053116	A	C	4117.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr11	4825010	rs6578533	T	A	6744.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr11	4825225	rs7941731	A	G	5618.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:1,209:1.00:210
chr11	4827283	rs919899	A	T	4075.73	.	AC=2;AF=1.00;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.47;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,154:1.00:154
chr11	4827322	rs934485	A	G	2192.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.24;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr11	4869906	rs7117260	A	C	2884.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr11	4870269	rs12417164	A	T	4358.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr11	4880992	rs7947547	C	G	5359.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:2,204:0.99:206
chr11	4928866	rs7941509	C	T	8691.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:0,319:1.00:319
chr11	4936613	rs16907312	G	T	6350.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr11	4964627	rs2595993	C	A	1054.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr11	4964649	rs2595992	G	T	1138.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr11	4964753	rs2605301	A	G	3878.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr11	4964784	rs2605302	A	T	4550.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr11	4965239	rs2570581	G	T	1785.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr11	4965301	rs2605303	G	T	2126.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr11	4967468	rs28698374	G	A	9842.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:0,362:1.00:362
chr11	4967492	.	A	T	1341.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.611;ClippingRankSum=0.000;DP=423;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.08;MQRankSum=-0.262;QD=3.19;ReadPosRankSum=0.340;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:325,95:0.23:420
chr11	4968198	rs3845246	C	A	3605.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr11	4976768	rs112749434	C	T	248.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.88;QD=31.10;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr11	4976811	rs28482315	C	A	655.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.65;QD=31.23;SOR=6.184;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr11	5013421	rs5789346	G	GT	1890.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.839;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=5.587;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.35;ReadPosRankSum=0.918;SOR=1.911;set=HC	GT:AD:AF:DP	1/1:10,99:0.91:109
chr11	5020416	rs2445290	A	G	5272.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr11	5079946	rs2445332	C	T	2981.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr11	5080844	rs16909440	T	C	6404.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr11	5141876	rs10837373	G	A	1089.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:2,41:0.95:43
chr11	5141902	rs10837374	T	C	1529.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:2,57:0.97:59
chr11	5141980	rs4426129	A	G	2731.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:2,107:0.98:109
chr11	5142134	rs11035760	C	T	5786.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:1,209:1.00:210
chr11	5142270	rs10837375	T	G	8611.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr11	5142549	rs7947334	T	C	7820.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr11	5153261	rs2472530	A	G	7711.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr11	5172786	rs10768611	A	G	7336.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr11	5199222	rs7924390	A	C	665.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr11	5199340	rs113029548	A	AATGCCC	6201.73	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr11	5199645	rs6578560	T	C	8335.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr11	5199660	rs6578561	T	C	7788.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr11	5199675	rs6578562	C	T	6667.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;MQ=60.07;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr11	5199708	rs6578563	T	A	2844.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr11	5199817	rs5789371	GC	G	994.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr11	5221645	rs11512276	C	A	8117.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr11	5221825	rs11036212	G	A	3458.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr11	5247141	rs1609812	G	A	295.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr11	5247733	rs7480526	A	C	2318.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr11	5247791	rs10768683	C	G	4399.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr11	5248243	rs713040	A	G	3470.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr11	5263577	rs10128555	C	G	368.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr11	5269533	rs3841756	GT	G	4972.73	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr11	5269582	rs371855998	AG	A	10236.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=229;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.14;QD=45.30;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,226:1.00:226
chr11	5269584	rs1065686	T	A	10282.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=228;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.11;QD=45.50;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,226:1.00:226
chr11	5269586	rs371890964	A	AG	10273.73	.	AC=2;AF=1.00;AN=2;DB;DP=231;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.99;QD=44.86;SOR=1.044;set=HC	GT:AD:AF:DP	1/1:0,229:1.00:229
chr11	5269799	rs28440105	A	C	1652.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.27;QD=43.49;SOR=3.500;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr11	5269806	rs28379094	C	T	1514.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.02;QD=43.28;SOR=2.964;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr11	5270539	rs111624259	C	A	288.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.95;QD=26.25;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr11	5270686	rs1061234	G	A	200.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.99;QD=28.69;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr11	5274717	rs2070972	A	C	1122.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.518;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.78;MQRankSum=1.071;QD=29.55;ReadPosRankSum=1.481;SOR=1.559;set=HC	GT:AD:AF:DP	1/1:1,37:0.97:38
chr11	5275802	rs141669845	G	A	205.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=29.40;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr11	5289896	rs3061750	A	AAAAC	2490.52	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.507;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=38.32;ReadPosRankSum=-1.080;SOR=1.197;set=HC	GT:AD:AF:DP	0/1:4,61:0.94:65
chr11	5322737	rs10837771	A	G	8252.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr11	5323071	rs7118113	C	T	4418.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr11	5344552	rs7934105	C	T	1193.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.21;SOR=2.066;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr11	5344561	rs7933257	G	A	1259.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.99;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr11	5344592	rs11036814	A	C	1717.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr11	5344772	rs10742622	T	C	5172.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr11	5344847	rs10768793	A	G	4718.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr11	5344902	rs7937237	C	G	4233.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr11	5345128	rs10837814	G	A	8211.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr11	5345170	rs7952293	A	G	6698.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr11	5345486	rs4910750	G	A	2944.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:2,109:0.98:111
chr11	5364276	rs4910551	G	A	5407.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:4,203:0.98:207
chr11	5364450	rs11036912	A	G	5847.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr11	5372690	rs4373970	A	G	782.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr11	5372718	rs4494330	G	T	1113.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr11	5372751	rs4910755	A	C	2214.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr11	5372856	rs4910756	A	G	7257.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr11	5373006	rs7483122	T	C	5840.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr11	5373104	rs5006889	A	G	6157.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.28;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,136:1.00:136
chr11	5373111	rs7479477	G	A	6622.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.31;SOR=0.735;set=HC	GT:AD:AF:DP	1/1:0,143:1.00:143
chr11	5373114	rs5006888	G	A	6492.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.47;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:0,146:1.00:146
chr11	5373129	rs5006887	C	T	4184.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr11	5373170	rs5006886	C	G	5028.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr11	5373242	rs5006885	T	G	10932.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.894;ClippingRankSum=0.000;DB;DP=251;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=43.91;ReadPosRankSum=1.285;SOR=0.250;set=HC	GT:AD:AF:DP	1/1:1,248:1.00:249
chr11	5373251	rs5006884	C	T	11024.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.222;ClippingRankSum=0.000;DB;DP=254;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=43.75;ReadPosRankSum=0.873;SOR=0.268;set=HC	GT:AD:AF:DP	1/1:1,251:1.00:252
chr11	5373311	rs5006883	T	C	7407.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:1,272:1.00:273
chr11	5373334	rs5006882	A	G	7315.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:1,266:1.00:267
chr11	5373562	rs5024042	C	A	8705.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr11	5373646	rs5024041	T	C	7463.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr11	5373724	rs5024040	A	G	6375.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.67;SOR=1.885;set=HC	GT:AD:AF:DP	1/1:0,146:1.00:146
chr11	5373728	rs5024039	C	A	6205.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.30;SOR=1.964;set=HC	GT:AD:AF:DP	1/1:0,137:1.00:137
chr11	5373738	rs5024038	A	G	5620.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.07;SOR=2.226;set=HC	GT:AD:AF:DP	1/1:0,122:1.00:122
chr11	5373807	rs5024037	G	A	1138.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr11	5410934	rs1498467	T	G	9179.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr11	5411031	rs1498468	C	T	6388.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr11	5411239	rs1498469	T	C	5233.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr11	5411395	rs9783355	C	A	7222.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.942;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=44.04;ReadPosRankSum=0.715;SOR=0.295;set=HC	GT:AD:AF:DP	1/1:1,163:0.99:164
chr11	5411398	rs2736531	T	G	7271.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.353;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=44.34;ReadPosRankSum=0.545;SOR=0.307;set=HC	GT:AD:AF:DP	1/1:1,163:0.99:164
chr11	5411579	rs10768906	GT	AC	7496.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;JOINED;set=Intersection	GT:AD:AF:DP	1/1:1,170:0.99:171
chr11	5423775	rs7481498	G	A	3093.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.88;SOR=4.343;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr11	5423779	rs2736527	G	A	3192.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.15;SOR=4.294;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr11	5424050	rs1909262	G	A	7751.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr11	5424430	rs7929412	A	G	10951.77	.	AC=2;AF=1.00;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	1/1:2,400:1.00:402
chr11	5424838	rs2736525	T	A	2638.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr11	5443442	rs2736590	G	C	7856.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr11	5443700	rs2736588	C	T	7474.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr11	5443739	rs2736587	T	C	6557.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr11	5443867	rs10838092	C	T	7888.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr11	5443887	rs10838093	T	C	13890.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.10;SOR=0.779;set=HC	GT:AD:AF:DP	1/1:0,315:1.00:315
chr11	5443893	rs10838094	G	A	14218.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.35;SOR=0.795;set=HC	GT:AD:AF:DP	1/1:0,328:1.00:328
chr11	5443963	rs10838095	G	A	8375.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr11	5444061	rs2736586	G	A	5750.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:2,208:0.99:210
chr11	5444136	rs2647574	C	T	5428.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr11	5444353	rs2647573	T	C	2939.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:1,106:0.99:107
chr11	5452418	rs1566278	G	A	781.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr11	5462085	rs11037444	G	A	5325.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:2,197:0.99:199
chr11	5462255	rs11037445	C	G	4005.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr11	5474838	rs2030094	G	T	5892.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr11	5475431	rs35301588	T	TCA	12702.73	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr11	5475597	rs11037503	C	T	7348.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr11	5510284	rs417425	A	G	6605.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr11	5510341	rs404280	C	T	7981.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:4,296:0.99:300
chr11	5510497	rs2467219	T	C	5291.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr11	5510626	rs444878	T	C	6550.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr11	5510688	rs7101919	T	C	7914.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr11	5510928	rs392296	G	A	2360.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr11	5511003	rs426886	G	A	622.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr11	5528918	rs2227271	C	T	2840.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr11	5529139	rs2234456	T	C	8687.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,328:1.00:328
chr11	5529865	rs186434	G	A	3109.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr11	5536537	rs393044	A	C	3503.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr11	5536848	rs2017433	G	A	3393.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr11	5617987	rs12272467	G	A	991.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr11	5618298	rs146384026	A	ATTTTAT	502.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr11	5625603	rs7108470	A	G	449.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	5625847	rs3751006	A	G	2638.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr11	5629607	rs10769121	G	A	1671.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr11	5631622	rs7125403	G	T	2095.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr11	5632212	rs10769124	G	A	5214.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr11	5653417	rs4287358	AT	GA	1024.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr11	5655150	rs7941976	T	A	2572.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr11	5655233	rs3824951	G	A	1180.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr11	5655722	.	TACACAC	T	582.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.953;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=1.901;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.21;ReadPosRankSum=3.021;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:13,28:0.68:41
chr11	5662319	rs7108834	C	T	2319.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr11	5663920	rs66637086	CT	C	2129.73	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr11	5664355	.	A	ATATATAT	238.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.081;ClippingRankSum=0.000;DP=23;ExcessHet=3.0103;FS=8.751;MLEAC=1;MLEAF=0.500;MQ=60.93;MQRankSum=0.000;QD=14.04;ReadPosRankSum=-0.579;SOR=3.897;set=HC	GT:AD:AF:DP	0/1:3,14:0.82:17
chr11	5664974	rs7109861	T	C	8050.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr11	5687320	.	T	TAA	100.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.670;ClippingRankSum=0.000;DP=97;ExcessHet=3.0103;FS=7.590;MLEAC=1;MLEAF=0.500;MQ=59.83;MQRankSum=0.779;QD=1.36;ReadPosRankSum=-0.990;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:53,21:0.28:74
chr11	5691191	rs4309185	C	T	973.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr11	5700340	rs3740995	T	C	3089.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr11	5701409	rs3824949	G	C	4714.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr11	5719667	rs2291842	T	C	1782.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:1,63:0.98:64
chr11	5719848	rs7950912	C	T	604.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	5729946	.	CTT	C	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.490;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.45;MQRankSum=0.000;QD=2.61;ReadPosRankSum=-1.543;SOR=0.138;set=HC	GT:AD:AF:DP	0/1:12,4:0.25:16
chr11	5755605	rs1498552	A	G	1125.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr11	5758062	rs7397032	T	C	6667.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr11	5758118	rs7396766	A	C	7579.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr11	5776287	rs7936512	C	T	10257.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	1/1:0,380:1.00:380
chr11	5776470	rs7394584	T	G	9006.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr11	5776484	rs4910844	A	T	9087.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr11	5776623	rs7396938	A	T	6375.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr11	5777023	rs10742782	C	T	1588.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr11	5777053	rs10742783	A	G	953.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr11	5809308	rs7934670	A	T	1852.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr11	5809477	rs10838637	A	G	5813.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr11	5809673	rs10769224	C	T	5741.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr11	5809746	rs10742787	C	T	5386.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr11	5810080	rs10742788	T	C	1279.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr11	5810103	rs68146349	AAT	A	215.73	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:5,15:0.75:20
chr11	5817841	rs1453423	C	T	8180.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr11	5817896	rs1453422	G	A	7402.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr11	5841856	rs4758435	C	T	7371.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:2,271:0.99:273
chr11	5862075	rs7946139	T	C	1015.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr11	5862532	rs10742809	A	C	6446.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr11	5862653	rs4357719	T	C	5654.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr11	5862731	rs10838719	A	G	5642.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr11	5862780	rs4362172	T	C	7132.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr11	5862845	rs4592451	A	G	7588.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr11	5862937	rs4495918	C	A	6204.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr11	5862984	rs10769272	G	C	5898.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr11	5863013	rs4362173	T	C	5985.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr11	5863113	rs10742810	G	A	5707.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:2,215:0.99:217
chr11	5863240	rs4417311	C	G	2837.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr11	5863306	rs4363637	G	C	963.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr11	5906048	rs4758168	G	A	7403.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr11	5906073	rs4757986	G	T	6822.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr11	5906192	rs1453435	A	C	12343.77	.	AC=2;AF=1.00;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	1/1:0,456:1.00:456
chr11	5906205	rs4757987	G	A	12908.77	.	AC=2;AF=1.00;AN=2;DB;DP=488;set=Intersection	GT:AD:AF:DP	1/1:2,482:1.00:484
chr11	5922707	rs7106300	C	T	6940.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr11	5923297	rs4601752	A	G	2482.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr11	5923419	rs4559671	C	T	647.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	5989293	rs7113548	G	A	6579.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:2,245:0.99:247
chr11	5989415	rs7114672	C	T	4327.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr11	6007272	rs4237768	A	G	4841.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr11	6007613	rs4354673	T	G	6564.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr11	6007680	rs4436524	A	G	8091.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr11	6007743	rs4436525	A	G	8566.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr11	6023581	rs11040248	A	G	7052.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr11	6023640	rs11040249	T	C	6440.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr11	6023818	rs10839221	G	A	4913.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:2,182:0.99:184
chr11	6079001	rs4448669	G	A	7779.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr11	6129837	rs1462983	C	T	7845.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:2,282:0.99:284
chr11	6150738	rs325637	A	G	1491.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr11	6173364	rs325695	T	A	6949.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr11	6220376	rs325610	G	C	4043.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr11	6221169	rs10839531	A	G	6835.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr11	6221214	rs11040799	T	A	7409.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr11	6227083	rs10742968	C	T	851.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr11	6231731	rs10769671	C	T	8608.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:1,319:1.00:320
chr11	6239344	rs3750944	G	A	4393.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr11	6243804	rs3750945	A	G	2180.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr11	6243843	rs3750946	C	G	1962.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr11	6243963	rs3750947	G	A	1629.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr11	6243982	rs325606	T	G	2147.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr11	6244466	.	C	G	1587.77	.	AC=2;AF=1.00;AN=2;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr11	6281108	rs2929180	T	G	1158.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr11	6281400	rs11040819	T	C	6599.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;MQ=59.97;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr11	6292837	rs10839535	CG	GA	3783.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;JOINED;set=Intersection	GT:AD:AF:DP	1/1:1,88:0.99:89
chr11	6340525	rs12570	A	T	3059.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr11	6340706	rs1051992	A	G	7416.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr11	6341684	rs2682123	C	G	1967.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr11	6411930	.	CCTGGTGCTGGCG	C	10559.73	.	AC=2;AF=1.00;AN=2;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr11	6413559	.	CT	C	35.93	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.140;ClippingRankSum=-0.000;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.99;ReadPosRankSum=-1.221;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:2,7:0.78:9
chr11	6415690	rs35098198	G	A	11596.77	.	AC=2;AF=1.00;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	1/1:2,434:1.00:436
chr11	6416959	rs1800606	C	T	8727.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr11	6461277	rs2682099	T	A	183.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr11	6477176	rs139873545	TTAAGGAACGGTACTATCTG	T	323.75	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr11	6477455	rs13343175	C	T	8015.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:2,294:0.99:296
chr11	6477831	rs10606	C	T	7500.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr11	6478384	rs11605141	C	T	1965.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr11	6478619	rs16913748	G	A	2346.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr11	6479487	rs41275192	T	C	4052.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr11	6486945	rs74053396	C	T	2692.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr11	6499215	rs2303493	A	G	2182.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr11	6500309	rs2253104	A	G	2056.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr11	6502636	rs11600431	G	C	1528.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:1,52:0.98:53
chr11	6502727	rs11604726	C	G	6870.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:4,247:0.98:251
chr11	6502780	rs11555935	C	A	10340.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	1/1:3,381:0.99:384
chr11	6519642	rs11604149	G	A	7817.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr11	6520015	rs11040899	G	T	3992.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr11	6520164	rs2555158	T	A	2933.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr11	6520346	rs10769693	C	G	267.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.78;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr11	6524072	rs11605196	A	C	3100.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr11	6524253	rs11603067	C	T	693.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.70;SOR=1.528;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr11	6530106	rs11605607	A	G	1326.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr11	6532778	rs17244263	A	T	837.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr11	6541225	rs11603869	C	G	5246.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:2,193:0.99:195
chr11	6541580	rs2555143	T	G	956.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr11	6549666	.	TAC	T	184.73	.	AC=1;AF=0.500;ALERT;AN=2;DP=29;set=Intersection	GT:AD:AF:DP	0/1:9,9:0.50:18
chr11	6549667	rs4623884	A	G	163.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.456;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=1.778;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.10;ReadPosRankSum=-1.025;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:10,8:0.44:18
chr11	6549667	.	AC	GT	105	.	AC=2;AF=1.00;AN=2;BRF=0.47;FR=0.5000;HP=1;HapScore=3;MGOF=20;MMLQ=24;MQ=60.0;NF=3;NR=1;PP=105;QD=39.6169687156;SC=GTGTGTGTGTACACACACTGA;SbPval=0.7;Source=Platypus;TC=19;TCF=14;TCR=5;TR=4;WE=6549676;WS=6549656;set=Platypus	GT:AD:AF:DP	1/1:15,4:0.21:19
chr11	6549668	rs4296019	C	T	163.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.483;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=1.778;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.10;ReadPosRankSum=-0.801;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:10,8:0.44:18
chr11	6549779	rs4633449	A	C	2290.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr11	6549995	rs7480644	A	G	3776.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.92;SOR=0.786;set=HC	GT:AD:AF:DP	1/1:0,88:1.00:88
chr11	6550004	rs2344828	A	G	3647.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.48;SOR=0.742;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr11	6550309	rs2344829	G	A	1039.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr11	6555365	rs7103810	A	G	12058.77	.	AC=2;AF=1.00;AN=2;DB;DP=442;set=Intersection	GT:AD:AF:DP	1/1:0,438:1.00:438
chr11	6560141	rs11040914	A	C	1122.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr11	6567895	rs11270441	C	CTGCCCTACTGCA	5927.73	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr11	6569896	rs11606889	G	A	2435.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr11	6584990	.	A	G	1459.77	.	AC=1;AF=0.500;AN=2;DP=187;set=Intersection	GT:AD:AF:DP	0/1:111,74:0.40:185
chr11	6585007	rs11040923	G	A	5559.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr11	6585502	rs7107072	T	C	2076.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr11	6591157	rs10839585	A	G	2709.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:1,95:0.99:96
chr11	6622714	rs2288283	G	A	3291.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr11	6622857	rs11826421	G	A	1418.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr11	6626049	rs55802517	G	A	1145.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:1,43:0.98:44
chr11	6626072	rs12272856	C	A	1516.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:1,59:0.98:60
chr11	6626186	rs181246131	G	C	1682.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:2,63:0.97:65
chr11	6629530	rs2048092	G	A	2157.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr11	6629665	rs1043388	C	T	2257.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr11	6630028	rs11314683	TC	T	16399.73	.	AC=2;AF=1.00;AN=2;DB;DP=522;set=Intersection	GT:AD:AF:DP	1/1:0,506:1.00:506
chr11	6630833	rs1043390	G	A	2656.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr11	6632349	rs2555174	C	G	529.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr11	6636106	rs1128396	T	A	2252.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr11	6637504	rs2072651	G	A	1919.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr11	6637518	rs7943955	A	G	1904.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr11	6637739	.	ATTT	A,AT	1119.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.508;ClippingRankSum=0.000;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.13;MQRankSum=0.373;QD=17.23;ReadPosRankSum=0.841;SOR=0.737;set=HC	GT:AD:AF:DP	1/2:15,24,26:0.37,0.40:65
chr11	6646108	rs10458926	T	C	2633.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr11	6647622	rs11827437	T	C	3533.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr11	6647931	rs34782445	C	T	4404.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:2,165:0.99:167
chr11	6647978	rs4442534	C	T	5322.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:3,195:0.98:198
chr11	6648424	rs4758443	G	A	4810.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:1,176:0.99:177
chr11	6648937	rs11040937	C	T	1332.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr11	6651810	rs2659872	A	G	4899.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr11	6652618	rs2659871	C	T	11200.77	.	AC=2;AF=1.00;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	1/1:1,411:1.00:412
chr11	6653232	rs2659870	C	G	2465.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr11	6654613	rs11040938	A	G	523.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	6655332	rs2659869	T	A	13235.77	.	AC=2;AF=1.00;AN=2;DB;DP=499;set=Intersection	GT:AD:AF:DP	1/1:0,495:1.00:495
chr11	6655433	rs997263	G	A	6664.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr11	6661447	rs117002568	G	A	7215.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:1,266:1.00:267
chr11	6703892	rs1567135	T	G	2231.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr11	6739109	rs7112561	G	A	7954.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr11	6739407	rs12284429	A	G	5517.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr11	6739814	rs7114441	C	T	13368.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.27;SOR=0.720;set=HC	GT:AD:AF:DP	1/1:0,302:1.00:302
chr11	6739822	rs7102825	T	C	13815.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.31;SOR=0.712;set=HC	GT:AD:AF:DP	1/1:0,319:1.00:319
chr11	6740308	rs12223353	C	T	7007.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr11	6789929	rs11828782	C	A	2831.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr11	6790106	rs7102536	T	C	3948.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr11	6806181	rs17264523	A	G	505.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr11	6806496	rs11041022	T	C	3028.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:2,112:0.98:114
chr11	6806827	rs2659880	G	T	8065.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr11	6807163	rs2659879	C	G	3937.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:1,144:0.99:145
chr11	6807243	rs497681	G	A	3625.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr11	6816778	rs866347	A	G	8074.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr11	6866815	rs2741801	C	T	1739.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr11	6866834	rs2595439	T	C	2868.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr11	6891704	rs10839632	T	C	15531.77	.	AC=2;AF=1.00;AN=2;DB;DP=588;set=Intersection	GT:AD:AF:DP	1/1:1,579:1.00:580
chr11	6898663	rs10839635	G	A	8023.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chr11	6913244	rs1965208	A	G	3972.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr11	6942476	rs10839658	C	A	8116.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr11	6942726	rs10839659	G	C	4992.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:1,180:0.99:181
chr11	6962971	rs10839663	C	T	1537.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:2,57:0.97:59
chr11	6965012	rs2515947	C	G	862.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr11	6976988	rs2239731	A	T	5475.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr11	7022160	rs2857919	A	G	5978.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr11	7022531	rs1156525	A	T	6556.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr11	7022717	rs1156526	T	C	5023.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr11	7059960	rs12801277	A	C	2647.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr11	7063755	rs7123944	C	T	2907.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr11	7065289	rs6578821	C	A	1192.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr11	7070866	rs1552727	G	A	1918.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr11	7071031	rs1552726	G	A	7211.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr11	7079038	rs10839708	G	A	5145.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr11	7091772	rs10769763	C	A	1424.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr11	7110363	rs4758158	G	A	10019.77	.	AC=2;AF=1.00;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	1/1:0,376:1.00:376
chr11	7110751	rs11041171	A	G	1746.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr11	7324475	rs4412741	T	C	9300.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:0,343:1.00:343
chr11	7335424	rs2035639	C	G	5658.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr11	7439093	rs4757993	G	T	537.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr11	7487951	.	C	CA	582.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.820;ClippingRankSum=0.000;DP=68;ExcessHet=3.0103;FS=16.831;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.40;ReadPosRankSum=1.377;SOR=3.450;set=HC	GT:AD:AF:DP	0/1:20,42:0.68:62
chr11	7570840	.	CT	C	190.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.708;ClippingRankSum=0.000;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.607;QD=1.51;ReadPosRankSum=-0.664;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:88,38:0.30:126
chr11	7614492	rs7115173	A	G	3899.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr11	7614531	rs7129888	C	A	2608.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr11	7619518	rs4758206	T	C	1442.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr11	7642407	rs10839822	T	C	594.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr11	7662732	rs4643071	C	T	3942.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr11	7663726	rs4402283	T	C	1674.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr11	7669523	.	TTTTTC	T	4019.73	.	AC=2;AF=1.00;AN=2;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr11	7670249	rs4237757	A	G	2566.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:1,85:0.99:86
chr11	7670353	rs4758009	A	C	3703.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:1,132:0.99:133
chr11	7670440	rs4758209	A	G	7283.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr11	7670943	rs10839831	G	A	3654.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:1,116:0.99:117
chr11	7672272	rs3923491	G	A	1402.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr11	7673015	rs5864	G	A	7385.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr11	7673099	rs11041498	T	C	2447.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.20;SOR=5.892;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr11	7673106	rs11041499	T	C	2302.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.15;SOR=5.630;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr11	7686584	rs1128627	A	T	4350.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr11	7686596	rs13172	G	A	4273.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:2,164:0.99:166
chr11	7686602	rs16411	G	GTGTT	7549.73	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr11	7686674	rs13854	T	C	3450.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:2,126:0.98:128
chr11	7686810	rs55826178	C	G	731.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr11	7686915	rs11041521	T	A	1230.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr11	7686959	rs11041522	A	G	2459.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr11	7686970	rs55635523	T	C	2959.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr11	7687669	rs12796110	A	C	970.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr11	7687715	rs12801394	T	C	1923.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr11	7687863	rs62620008	C	A	1813.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr11	7687913	rs72851388	C	T	1031.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr11	7689633	rs10743030	A	C	1770.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr11	7690685	rs4631871	T	C	1991.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr11	7693853	rs144823333	G	GCACA,GCACACA	2455.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=82;set=Intersection	GT:AF:DP	1/2:0.16,0.81:62
chr11	7710729	rs4505055	C	G	1569.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr11	7710742	rs4365041	A	T	2782.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.62;SOR=2.419;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr11	7710750	rs4277100	G	A	3096.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.29;SOR=2.334;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr11	7710877	rs4503519	C	T	7169.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr11	7712471	rs4509745	C	T	4432.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr11	7716549	rs4287332	C	G	2722.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr11	7716855	rs4528317	T	A	1532.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr11	7720426	rs4367936	C	A	1941.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr11	7720453	rs35619418	A	AGG	1941.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr11	7721743	rs12279973	C	A	978.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr11	7721870	rs10839849	G	A	4832.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr11	7723171	rs5789540	GA	G	3474.73	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr11	7723683	rs4373911	G	A	5633.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr11	7725092	rs3924747	C	T	1431.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr11	7725173	rs3924748	G	A	3460.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr11	7725454	rs11041539	C	T	397.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr11	7727872	rs12289558	T	C	2030.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr11	7794545	rs1482784	C	A	6976.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr11	7794650	rs371799	G	C	6553.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr11	7794976	rs980145	T	A	9482.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:1,352:1.00:353
chr11	7847208	rs1482791	T	C	9593.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:0,339:1.00:339
chr11	7847466	rs1482792	A	G	4279.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.58;SOR=1.132;set=HC	GT:AD:AF:DP	1/1:0,96:1.00:96
chr11	7847472	rs1482793	C	T	4279.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.58;SOR=1.132;set=HC	GT:AD:AF:DP	1/1:0,96:1.00:96
chr11	7847523	rs1482794	T	A	1493.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr11	7871011	rs4758022	A	G	11578.77	.	AC=2;AF=1.00;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	1/1:1,421:1.00:422
chr11	7949134	rs12273639	T	A	1006.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr11	7949192	rs11041669	G	A	2406.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr11	7949350	rs4758258	A	G	5861.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr11	7950024	rs12272735	A	G	9749.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	1/1:1,348:1.00:349
chr11	7960045	rs6578915	G	A	1329.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr11	7961130	rs4758259	C	T	2081.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr11	7981261	rs116880092	C	T	6370.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:1,226:1.00:227
chr11	7981521	rs11608118	C	T	3903.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr11	8009420	rs12278319	G	A	703.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr11	8014479	rs4758267	C	T	3308.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:2,116:0.98:118
chr11	8014695	rs76514958	C	T	4180.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr11	8017571	.	T	A	4332.77	.	AC=2;AF=1.00;AN=2;DP=142;set=Intersection	GT:AD:AF:DP	1/1:2,138:0.99:140
chr11	8061100	rs10769865	C	T	1246.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr11	8103104	rs11041733	G	T	6896.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:2,261:0.99:263
chr11	8111540	rs2272382	T	C	1259.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr11	8115699	rs4758289	T	C	4612.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr11	8115762	rs7396690	C	G	2451.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr11	8117228	rs11041739	A	G	6436.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr11	8118103	rs2242501	A	G	2773.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr11	8118116	rs2242502	A	G	3027.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr11	8118185	rs10160258	C	G	6006.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr11	8118200	rs7931842	C	A	6176.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr11	8119063	rs7950355	A	G	789.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr11	8122228	rs12796222	A	G	4431.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.21;SOR=1.222;set=HC	GT:AD:AF:DP	1/1:0,105:1.00:105
chr11	8122234	rs7394561	G	A	4121.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.85;SOR=1.265;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr11	8132301	rs11826236	C	T	2289.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr11	8132728	rs56271449	CA	C	308.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.135;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=6.463;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=0.000;QD=8.58;ReadPosRankSum=1.461;SOR=3.952;set=HC	GT:AD:AF:DP	0/1:12,24:0.67:36
chr11	8149753	rs1528133	T	G	4914.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:1,190:0.99:191
chr11	8159857	rs55990541	C	T	4310.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:4,170:0.98:174
chr11	8159884	rs80168649	C	G	3863.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:4,157:0.98:161
chr11	8159961	rs56359962	T	A	1781.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.00;SOR=0.957;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr11	8160038	rs58292164	C	CAA	226.75	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.83;QD=28.34;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr11	8161878	rs6578932	C	T	374.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr11	8174763	rs10839983	C	T	381.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr11	8174966	rs10743052	G	A	2128.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr11	8248440	rs2290451	C	G	957.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr11	8248482	rs2290450	C	T	2124.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr11	8284838	rs204931	A	G	3129.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr11	8284981	rs176083	A	C	3704.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr11	8284995	rs204929	T	C	3553.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr11	8285124	rs2071458	A	C	1009.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr11	8434972	rs3833784	CA	C	2954.73	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:1,134:0.99:135
chr11	8455678	.	CACTTGAACCCAGGAGGCAGAGGTTGCAGTTG	C	143	.	AC=2;AF=1.00;AN=2;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.75;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr11	8457237	rs10769907	G	A	38.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr11	8483335	rs1900273	G	A	2833.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr11	8486310	rs1446464	C	A	4858.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.55;SOR=0.894;set=HC	GT:AD:AF:DP	1/1:0,183:1.00:183
chr11	8494843	.	T	TA	106.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.641;ClippingRankSum=0.000;DP=173;ExcessHet=3.0103;FS=0.932;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=0.000;QD=0.78;ReadPosRankSum=0.258;SOR=0.522;set=HC	GT:AD:AF:DP	0/1:113,24:0.18:137
chr11	8639325	rs4929924	G	A	1156.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr11	8641501	rs7946508	C	A	817.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr11	8641882	rs7943945	G	A	1670.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr11	8642218	rs7950166	C	T	1178.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr11	8644530	rs4929948	T	G	5346.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr11	8644562	rs10533257	TCATA	T	5082.73	.	AC=2;AF=1.00;AN=2;DB;DP=127;MQ=60.09;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr11	8646237	rs12803166	G	T	3812.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:2,146:0.99:148
chr11	8662090	rs11042022	T	C	646.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.10;SOR=6.736;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr11	8662516	rs11042023	T	C	1321.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr11	8669437	rs10840100	A	G	1599.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr11	8670172	rs7950801	T	C	1182.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr11	8736046	rs931757	C	T	1381.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr11	8751889	rs3794153	C	G	9140.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:2,334:0.99:336
chr11	8788168	rs10743089	A	T	795.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr11	8788225	rs10734637	A	C	1271.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr11	8788308	rs189676378	G	T	514.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr11	8797684	.	CACGT	C	1110.73	.	AC=2;AF=1.00;AN=2;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.43;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr11	8797693	.	GCA	G	932.73	.	AC=2;AF=1.00;AN=2;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.55;SOR=2.400;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	8797705	.	G	GCACACACACACA	827.73	.	AC=1;AF=0.500;AN=2;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=28.54;SOR=1.911;set=HC	GT:AD:AF:DP	0/1:6,23:0.79:29
chr11	8797707	rs145618051	G	A	2039.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.20;QD=43.40;SOR=2.400;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr11	8933853	rs2742519	T	G	1422.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr11	8934101	rs2742518	A	G	6777.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr11	8938787	rs2016942	A	G	803.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:1,31:0.97:32
chr11	8942999	rs2568023	G	A	7762.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:2,291:0.99:293
chr11	8946950	rs3751068	G	T	1968.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr11	8947021	rs2653588	A	G	5635.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr11	8947283	rs3751066	G	C	5296.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr11	8948680	rs3751065	A	T	2012.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr11	8959511	rs4910179	T	G	2380.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:1,81:0.99:82
chr11	8959545	rs4909951	C	A	2566.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr11	8970083	rs2653604	C	A	1296.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr11	8977691	rs2742488	C	G	3717.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr11	8977707	rs2568069	G	A	4180.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr11	9001289	rs71062805	TA	T	422.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.662;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.62;MQRankSum=1.030;QD=8.45;ReadPosRankSum=-2.156;SOR=0.951;set=HC	GT:AD:AF:DP	0/1:14,36:0.72:50
chr11	9001466	.	TTTTTTG	T	33.82	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.319;ClippingRankSum=-0.000;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.45;ReadPosRankSum=1.150;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr11	9004376	rs35481824	CT	C	133.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.810;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=3.845;MLEAC=1;MLEAF=0.500;MQ=59.77;MQRankSum=0.000;QD=1.49;ReadPosRankSum=-0.232;SOR=1.244;set=HC	GT:AD:AF:DP	0/1:61,29:0.32:90
chr11	9005036	rs2568046	T	A	1952.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:1,72:0.99:73
chr11	9051385	rs7479998	C	A	3649.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr11	9052170	rs10769983	G	A	545.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr11	9052423	rs7395988	A	C	3504.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr11	9072140	rs3751052	C	T	3362.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr11	9081926	rs7112378	C	T	1848.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr11	9087533	rs2003906	A	G	6225.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:2,229:0.99:231
chr11	9112020	rs7484187	T	A	509.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr11	9113002	rs60494098	A	G	1972.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:2,74:0.97:76
chr11	9113008	rs142900716	GGCA	G	2278.73	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:1,53:0.98:54
chr11	9167114	rs2291840	C	A	651.89	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:3,25:0.89:28
chr11	9167399	rs10732517	T	C	2229.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr11	9187634	.	C	CT	81.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.610;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.89;ReadPosRankSum=1.160;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:13,8:0.38:21
chr11	9192336	rs10550560	TAC	T	319.73	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:49,18:0.27:67
chr11	9225486	rs952374	C	G	5107.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:2,186:0.99:188
chr11	9228785	rs7396439	G	A	1559.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.44;SOR=1.123;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr11	9316730	rs4396289	T	C	283.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr11	9316937	rs4601780	G	A	1166.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr11	9321399	rs10743101	A	G	293.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr11	9406349	rs4606477	T	C	4845.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;MQ=59.94;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr11	9442388	rs12418581	C	A	315.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr11	9450377	rs2290423	T	G	3531.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:2,124:0.98:126
chr11	9459592	.	GTTTTTTTTTTTTTTTTT	G	364.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.391;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.43;MQRankSum=0.640;QD=28.06;ReadPosRankSum=2.004;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:2,11:0.85:13
chr11	9493100	rs7119680	G	T	459.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.74;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr11	9494461	rs35668857	C	CT	221.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.110;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=8.554;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.34;ReadPosRankSum=-0.388;SOR=0.103;set=HC	GT:AD:AF:DP	0/1:16,19:0.54:35
chr11	9495961	rs2278900	A	T	2950.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr11	9519420	rs10840249	T	C	354.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr11	9522567	rs2290425	T	C	1076.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr11	9537904	rs10743108	G	C	2686.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr11	9595732	rs11042428	C	G	896.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.89;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr11	9734945	rs1390679	A	G	450.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr11	9746137	rs419412	A	G	818.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr11	9746201	rs1695613	G	A	2205.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr11	9746552	rs1960386	A	G	448.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr11	9748483	rs2453831	T	C	2513.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr11	9748620	rs2453832	G	T	1031.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.99;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr11	9748624	rs2454612	C	T	1006.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.77;SOR=2.030;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	9749552	rs67364105	CT	C	1165.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr11	9749554	rs56116109	T	G	1174.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr11	9749645	rs397686	A	C	2332.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:2,91:0.98:93
chr11	9751089	rs12360647	G	A	667.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr11	9754221	rs360157	C	T	1622.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr11	9759608	rs93139	T	C	426.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr11	9759713	rs93138	T	G	3004.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr11	9759918	rs173396	G	A	835.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr11	9769562	rs415895	C	G	3473.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr11	9771687	rs6483656	G	C	439.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.87;SOR=1.371;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	9802228	rs360124	G	C	1842.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr11	9802952	rs3763862	A	C	639.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr11	9811039	rs11042496	C	A	2970.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr11	9812236	rs2645029	G	A	1107.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr11	9830595	rs11042500	G	A	4580.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.18;SOR=1.238;set=HC	GT:AD:AF:DP	1/1:0,175:1.00:175
chr11	9830732	rs10770066	A	T	624.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr11	9833988	rs4910065	A	G	1286.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr11	9861009	rs7483882	G	A	2448.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr11	9864428	rs56254895	G	C	1998.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr11	9875353	rs375686	G	T	1457.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr11	9878332	rs11322743	AT	A	445.70	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.217;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=0.697;QD=8.25;ReadPosRankSum=0.158;SOR=0.880;set=HC	GT:AD:AF:DP	0/1:12,42:0.78:54
chr11	10014085	rs79470805	T	C	4401.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr11	10215598	rs4910097	C	T	1698.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr11	10472492	rs35417007	GC	G	2787.73	.	AC=2;AF=1.00;AN=2;DB;DP=81;MQ=60.13;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr11	10508654	.	C	T	584.77	.	AC=2;AF=1.00;AN=2;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr11	10518289	rs1466426	T	C	1428.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr11	10522978	rs10840430	G	T	1673.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr11	10526060	rs7943804	C	T	6181.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr11	10553675	rs4910155	C	T	423.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr11	10655609	rs2162044	C	T	3235.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr11	10673739	rs4909945	T	C	5213.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr11	10709168	rs4910169	T	C	445.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr11	10709194	rs1035694	C	T	588.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr11	10709208	rs148971137	C	A	733.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr11	10709415	rs61314456	C	CT	402.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.293;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=1.976;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.38;ReadPosRankSum=-0.645;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:6,22:0.79:28
chr11	10709424	rs371862341	G	T	35.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.210;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=1.976;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.28;ReadPosRankSum=0.224;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:22,6:0.21:28
chr11	10711817	rs7123827	A	C	695.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	10711918	.	T	TA	1002.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.010;ClippingRankSum=0.000;DP=87;ExcessHet=3.0103;FS=0.967;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.80;ReadPosRankSum=1.461;SOR=0.489;set=HC	GT:AD:AF:DP	0/1:22,63:0.74:85
chr11	10715124	rs10770136	T	C	1261.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr11	10786175	rs7118399	C	T	4852.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr11	10795431	rs11386264	C	CA	114.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.689;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.25;ReadPosRankSum=1.082;SOR=0.467;set=HC	GT:AD:AF:DP	0/1:34,17:0.33:51
chr11	10820663	rs71034785	T	TA	1408.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.009;ClippingRankSum=0.000;DB;DP=203;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.80;ReadPosRankSum=2.078;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:54,106:0.66:160
chr11	10821055	rs3736327	C	T	3853.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr11	10822202	rs4910190	G	A	3708.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr11	10822350	rs7951708	C	T	5880.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr11	10823079	rs10840492	T	C	1805.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr11	10823576	.	C	CACACTCCTAAAATAGTTTCATGTTTTAATAGCAAATGAAATCACATATATTGCATAATTTAACATTTGTTGCCTAA	2955.73	.	AC=2;AF=1.00;AN=2;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=492.62;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr11	10823815	rs7105210	C	T	4325.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr11	10824540	rs10743150	G	A	390.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr11	10824731	rs2270620	C	T	4705.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr11	10826341	rs2242360	A	G	1223.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr11	10827418	rs11042964	T	C	6989.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr11	10828361	rs10743151	C	A	4053.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr11	10828490	rs11373962	T	TA	1295.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr11	10830106	rs7127279	A	G	2544.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr11	11292635	rs12282251	C	T	542.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr11	11292700	rs10831567	G	C	2194.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:2,82:0.98:84
chr11	11292859	rs12282460	G	T	5960.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.19;SOR=0.783;set=HC	GT:AD:AF:DP	1/1:0,138:1.00:138
chr11	11292864	rs12282401	C	T	5697.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.17;SOR=0.772;set=HC	GT:AD:AF:DP	1/1:0,129:1.00:129
chr11	11314538	rs10437598	C	T	2486.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr11	11348669	rs17435705	G	A	3533.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr11	11348828	rs745181	A	G	1895.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr11	11354346	rs901553	T	C	2672.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr11	11354393	rs901554	A	G	1652.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr11	11373508	rs7948121	T	C	2429.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr11	11373587	rs7945066	A	G	8446.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr11	11373635	rs1056963	C	T	12089.77	.	AC=2;AF=1.00;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	1/1:0,453:1.00:453
chr11	11373808	rs1056951	T	G	5982.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr11	11373847	.	C	A	7817.77	.	AC=2;AF=1.00;AN=2;DP=283;set=Intersection	GT:AD:AF:DP	1/1:1,281:1.00:282
chr11	11373925	rs4243927	A	C	10786.77	.	AC=2;AF=1.00;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	1/1:0,397:1.00:397
chr11	11374016	rs2896586	T	A	8502.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr11	11374283	rs2896585	T	G	10191.77	.	AC=2;AF=1.00;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	1/1:0,368:1.00:368
chr11	11398698	rs10444245	G	A	503.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr11	11954786	rs10741562	G	A	607.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr11	11958113	.	G	GT	46.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.187;ClippingRankSum=0.000;DP=29;ExcessHet=3.0103;FS=4.771;MLEAC=1;MLEAF=0.500;MQ=60.74;MQRankSum=2.125;QD=2.23;ReadPosRankSum=-1.456;SOR=0.053;set=HC	GT:AD:AF:DP	0/1:14,7:0.33:21
chr11	11972054	rs11022090	A	G	677.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr11	11976628	rs7933089	G	A	3436.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr11	11986061	rs3206824	T	C	5255.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr11	11989899	rs2291599	T	C	2959.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:1,109:0.99:110
chr11	12225946	rs3763823	T	G	8203.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr11	12229489	rs72866069	G	A	1969.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr11	12241626	rs7101833	A	G	705.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	12242030	rs4237704	A	G	866.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:1,31:0.97:32
chr11	12244468	rs10831769	G	A	343.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr11	12248515	rs2706643	T	G	4009.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:2,143:0.99:145
chr11	12248766	rs2706644	A	C	1193.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr11	12262410	rs2279613	G	A	1523.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr11	12262476	rs2641936	C	A	4238.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr11	12279937	rs2270513	T	C	2893.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr11	12313887	rs1874043	C	G	2224.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr11	12315186	rs10741578	G	A	11427.77	.	AC=2;AF=1.00;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	1/1:0,435:1.00:435
chr11	12315407	rs10741579	G	C	6287.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr11	12315716	rs1493951	C	T	4442.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr11	12315848	rs1493952	C	T	5279.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr11	12315891	rs1493953	G	A	6816.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr11	12315915	rs1493954	A	G	7558.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:2,288:0.99:290
chr11	12316344	.	G	GCTC	1332.73	.	AC=1;AF=0.500;AN=2;DP=115;set=Intersection	GT:AD:AF:DP	0/1:9,36:0.80:45
chr11	12345459	rs903213	C	T	414.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr11	12379792	rs10741583	G	C	2135.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:2,77:0.97:79
chr11	12495607	rs2288291	T	C	1156.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr11	12495623	rs7109678	G	C	892.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr11	12517892	rs138094049	A	AGAGTGCATGCATGCAT	476.73	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr11	12518237	rs12223547	G	T	556.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr11	12532912	rs12283539	A	C	205.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr11	12534707	rs2243707	G	A	8784.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,325:1.00:325
chr11	12534808	rs2403631	A	G	9837.77	.	AC=2;AF=1.00;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	1/1:0,369:1.00:369
chr11	12535209	rs2288293	C	T	3421.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr11	12535415	rs11022380	A	G	1329.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr11	12535485	rs56043920	CACAGGCTCCTGCACTA	C	5500.73	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr11	12886540	rs10500764	C	T	2878.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:2,101:0.98:103
chr11	12951623	rs2245140	A	C	1576.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr11	12951926	rs2727360	A	G	2776.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr11	12952015	rs2727361	C	T	771.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr11	13032679	rs10603579	AGG	A	637.73	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.77;QD=42.52;SOR=4.047;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr11	13032686	rs11399899	T	TC	637.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr11	13398129	rs10741617	T	A	7527.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr11	13399791	rs10832030	A	G	587.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr11	13514263	rs6254	C	T	4403.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:1,164:0.99:165
chr11	13514417	rs694	C	T	562.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr11	13716530	rs7130943	A	G	1462.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr11	13716614	rs143770401	T	TA	187.87	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr11	13716619	rs71482916	C	A	196.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr11	13984720	rs10741631	A	C	2657.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr11	14101493	rs5789820	G	GC	7361.73	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr11	14246296	rs1025412	G	A	2468.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr11	14264979	rs2303974	C	A	4543.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr11	14278049	rs3763950	T	A	4603.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:2,161:0.99:163
chr11	14329984	rs2915408	C	G	624.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	14386145	rs4517475	A	G	1080.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr11	14480292	rs12576926	C	T	1235.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.75;SOR=1.426;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr11	14480309	rs34021860	CT	C	185.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.185;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=2.769;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.78;ReadPosRankSum=0.068;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:3,16:0.84:19
chr11	14486608	.	TACACACAC	T	462.73	.	AC=2;AF=1.00;AN=2;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.56;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr11	14497269	rs2597194	C	T	3122.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr11	14501296	rs2575857	C	T	2114.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr11	14504774	rs72419983	CCACA	C	402.74	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.27;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr11	14512060	rs2597189	C	T	1212.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr11	14516003	rs10832279	TT	AA	539.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.113;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=5.341;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=16.87;ReadPosRankSum=0.351;SOR=3.407;set=HC	GT:AD:AF:DP	1/1:2,30:0.94:32
chr11	14520566	rs3214792	T	TA	481.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.291;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=2.876;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=17.84;ReadPosRankSum=0.279;SOR=0.211;set=HC	GT:AD:AF:DP	1/1:2,25:0.93:27
chr11	14532338	rs2597218	C	T	702.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr11	14539315	rs59770964	TA	T	504.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.206;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.42;MQRankSum=0.901;QD=10.97;ReadPosRankSum=-1.674;SOR=0.963;set=HC	GT:AD:AF:DP	0/1:8,38:0.83:46
chr11	14539639	rs2575849	T	A	249.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr11	14540671	rs1823466	A	G	3480.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr11	14540942	rs2305305	C	T	1508.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr11	14991539	rs5239	T	C	1781.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr11	15096419	rs1540139	C	T	2024.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr11	15170644	rs1714354	T	C	4310.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr11	15170879	rs1714353	C	T	329.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr11	15197186	rs1792588	A	G	1696.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr11	15198772	rs1624731	G	T	737.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr11	15199957	rs1714376	T	C	3304.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr11	16117684	.	G	GA	125.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834;ClippingRankSum=0.000;DP=78;ExcessHet=3.0103;FS=1.359;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.03;ReadPosRankSum=-0.769;SOR=0.457;set=HC	GT:AD:AF:DP	0/1:45,17:0.27:62
chr11	16205323	rs7926424	T	C	1058.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr11	16205595	rs1455111	C	T	796.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr11	16339918	rs34820506	C	CT,CTT	1864.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.299;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=3.278;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.07;MQRankSum=0.464;QD=12.43;ReadPosRankSum=0.589;SOR=1.144;set=HC	GT:AD:AF:DP	1/2:31,78,41:0.52,0.27:150
chr11	16760244	rs1846936	T	G	1695.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr11	16805226	rs739936	C	T	2913.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr11	16872653	rs35098462	G	A	5445.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr11	16874067	rs418113	C	T	2333.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr11	17035487	.	AC	A	201.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.045;ClippingRankSum=0.000;DP=55;ExcessHet=3.0103;FS=4.613;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.67;ReadPosRankSum=1.601;SOR=1.426;set=HC	GT:AD:AF:DP	0/1:41,14:0.25:55
chr11	17096059	rs11024148	A	G	10242.77	.	AC=2;AF=1.00;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	1/1:0,370:1.00:370
chr11	17096150	rs7125607	T	A	8629.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chr11	17111272	rs10832733	A	G	3240.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:2,116:0.98:118
chr11	17113483	rs7113396	C	T	222.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr11	17172133	rs2302511	T	C	8775.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:0,338:1.00:338
chr11	17333663	rs2521998	G	A	754.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr11	17339127	rs2634462	T	C	2253.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr11	17351683	rs757081	C	G	759.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr11	17352338	rs75207092	A	C	467.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.99;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr11	17394073	rs10832778	C	G	4839.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr11	17408404	rs5213	C	T	1676.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr11	17408630	rs5215	C	T	5567.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr11	17409069	rs5218	G	A	6709.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:1,232:1.00:233
chr11	17409572	rs5219	T	C	7847.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr11	17410283	rs5222	C	T	9526.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	1/1:0,371:1.00:371
chr11	17414757	rs41282912	C	T	4349.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr11	17415190	rs4148646	C	G	4665.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr11	17418477	rs757110	C	A	5145.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr11	17435936	rs4148631	G	A	1035.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr11	17435966	rs4148630	G	A	1374.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr11	17436191	rs1800852	A	G	3148.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.13;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr11	17436191	.	AAG	GAA	2504	.	AC=2;AF=1.00;AN=2;BRF=0.39;FR=1.0000;HP=2;HapScore=1;MGOF=5;MMLQ=24;MQ=59.93;NF=15;NR=41;PP=2504;QD=20;SC=GGGGGTGCGGAAGGCATTCTC;SbPval=0.63;Source=Platypus;TC=59;TCF=17;TCR=42;TR=56;WE=17436201;WS=17436181;set=Platypus	GT:AD:AF:DP	1/1:3,56:0.95:59
chr11	17436193	rs1800851	G	A	3148.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.35;SOR=1.745;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr11	17436936	rs4148626	A	G	4651.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr11	17449929	rs1799858	C	T	5219.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:1,197:0.99:198
chr11	17452492	rs1799857	G	A	2218.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr11	17452580	rs2074308	C	T	643.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr11	17515833	rs1055574	A	G	1630.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:2,65:0.97:67
chr11	17515970	rs2072225	G	A	1422.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr11	17516038	rs2072227	C	T	618.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr11	17517407	rs1859824	G	C	560.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr11	17519742	rs1064074	C	G	12336.77	.	AC=2;AF=1.00;AN=2;DB;DP=483;set=Intersection	GT:AD:AF:DP	1/1:0,475:1.00:475
chr11	17526256	rs76769358	A	G	3045.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:6,155:0.96:161
chr11	17531449	rs2237965	G	T	1150.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr11	17533397	rs2190453	G	A	1423.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr11	17533635	rs2190454	G	A	5120.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr11	17539212	rs10766408	T	C	446.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr11	17542439	rs2240487	T	C	2683.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:2,100:0.98:102
chr11	17542583	rs2108332	C	T	7867.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.20;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,178:1.00:178
chr11	17542586	rs2041031	T	C	7842.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.07;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,174:1.00:174
chr11	17542649	rs2041032	T	C	2013.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr11	17542872	rs2240488	G	C	1999.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr11	17545091	rs4757539	A	G	3060.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:1,116:0.99:117
chr11	17548737	rs12795083	T	C	1064.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr11	17574588	rs4757543	T	C	5406.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr11	17580050	rs7130051	A	C	4671.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:2,169:0.99:171
chr11	17580175	rs7130190	A	T	12206.77	.	AC=2;AF=1.00;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	1/1:0,450:1.00:450
chr11	17580998	rs10832798	TC	CT	1494.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr11	17582470	rs1990180	T	C	2411.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr11	17583423	rs4757545	G	A	981.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr11	17591961	rs10832802	C	T	1884.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr11	17593709	rs7106548	T	C	4291.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr11	17594513	rs1076312	A	T	2537.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr11	17596313	rs4757548	G	A	6818.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr11	17598187	rs4756901	G	A	10592.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.32;SOR=1.028;set=HC	GT:AD:AF:DP	1/1:0,239:1.00:239
chr11	17598191	rs4756902	G	A	10468.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.55;SOR=1.103;set=HC	GT:AD:AF:DP	1/1:0,235:1.00:235
chr11	17600033	rs2355466	G	A	4171.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:2,163:0.99:165
chr11	17612972	rs720460	T	G	4314.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:2,156:0.99:158
chr11	17627613	rs7934079	G	C	3390.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr11	17631751	rs2041028	C	T	14079.77	.	AC=2;AF=1.00;AN=2;DB;DP=526;set=Intersection	GT:AD:AF:DP	1/1:0,525:1.00:525
chr11	17632306	rs1003490	C	T	16758.77	.	AC=2;AF=1.00;AN=2;DB;DP=650;set=Intersection	GT:AD:AF:DP	1/1:4,627:0.99:631
chr11	17632651	rs7111528	C	T	10530.77	.	AC=2;AF=1.00;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	1/1:0,404:1.00:404
chr11	17633012	rs731783	T	C	3039.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:2,112:0.98:114
chr11	17653572	rs2058003	A	G	1098.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr11	17655839	rs12277962	A	T	3025.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr11	17660181	rs12290375	G	A	3347.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr11	17663416	rs12422210	G	A	9145.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	1/1:4,347:0.99:351
chr11	17663444	rs10832824	C	T	12517.77	.	AC=2;AF=1.00;AN=2;DB;DP=486;set=Intersection	GT:AD:AF:DP	1/1:3,479:0.99:482
chr11	17663742	rs2023483	G	C	5203.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr11	17663862	rs2023484	A	G	2946.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr11	17742681	rs10832853	G	C	4788.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr11	17940200	rs74865487	T	C	745.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.29;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr11	17940204	.	C	CACACAT,CACAT	736.73	.	AC=2,0;AF=1.00,0.00;AN=2;DP=52;set=Intersection	GT:AF:DP	1/1:1.00:20
chr11	17940211	rs1080246	T	A	744.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.20;QD=37.24;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr11	17940213	rs77640161	T	A	744.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.20;QD=37.24;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr11	17948311	rs1468291	T	C	4554.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:2,174:0.99:176
chr11	17948537	rs728639	A	G	611.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr11	18023414	rs211134	C	T	1011.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr11	18034592	rs3741202	G	C	1165.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr11	18034605	rs3741201	C	G	945.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr11	18044304	rs211101	C	T	2330.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr11	18047255	rs1799913	G	T	5104.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr11	18054777	rs10832874	A	G	2790.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr11	18063977	rs623580	A	T	1656.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:1,67:0.99:68
chr11	18111872	.	C	CA	181.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.197;ClippingRankSum=0.000;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=0.000;QD=1.49;ReadPosRankSum=-0.222;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:92,30:0.25:122
chr11	18159169	rs2468839	A	G	7462.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr11	18159254	rs4274188	A	G	13720.77	.	AC=2;AF=1.00;AN=2;DB;DP=509;MQ=59.99;set=Intersection	GT:AD:AF:DP	1/1:0,507:1.00:507
chr11	18194827	rs2468774	C	G	11554.77	.	AC=2;AF=1.00;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	1/1:0,424:1.00:424
chr11	18194878	rs2445180	T	G	10514.77	.	AC=2;AF=1.00;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	1/1:1,376:1.00:377
chr11	18194964	rs1869788	A	G	7124.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:1,245:1.00:246
chr11	18195051	rs2445179	T	C	8510.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr11	18195448	rs4630269	C	T	5717.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr11	18210480	rs2445150	T	C	2523.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr11	18231289	rs4757627	C	A	4420.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:3,164:0.98:167
chr11	18231749	rs2468789	T	G	1356.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr11	18253176	rs2460827	C	T	4484.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr11	18267027	rs2468844	C	T	8046.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr11	18267135	rs56373142	C	T	5533.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;MQ=60.01;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr11	18267188	rs58546509	GA	G	2435.73	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr11	18267373	rs1671927	C	T	1932.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:18,70:0.80:88
chr11	18267431	rs76546965	C	T	3979.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.397;ClippingRankSum=0.000;DB;DP=247;ExcessHet=3.0103;FS=2.194;MLEAC=1;MLEAF=0.500;MQ=49.17;MQRankSum=-11.892;QD=16.11;ReadPosRankSum=-0.541;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:144,103:0.42:247
chr11	18267434	rs78891342	AAC	GGT	4167.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.312;ClippingRankSum=0.000;DB;DP=257;ExcessHet=3.0103;FS=2.826;JOINED;MLEAC=1;MLEAF=0.500;MQ=49.10;MQRankSum=-11.621;QD=16.22;ReadPosRankSum=0.263;SOR=0.901;set=HC	GT:AD:AF:DP	0/1:151,106:0.41:257
chr11	18267463	rs74872559	A	G	6074.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.354;ClippingRankSum=0.000;DB;DP=340;ExcessHet=3.0103;FS=0.393;MLEAC=1;MLEAF=0.500;MQ=48.11;MQRankSum=-8.455;QD=17.87;ReadPosRankSum=1.588;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:180,160:0.47:340
chr11	18267471	rs1136766	A	G	3748.77	.	AC=1;AF=0.500;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	0/1:160,180:0.53:340
chr11	18267478	rs79620496	G	A	6080.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:178,160:0.47:338
chr11	18267651	rs80208174	A	C	1471.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr11	18267702	rs4757631	T	A	709.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr11	18288350	.	C	T	520.77	.	AC=2;AF=1.00;AN=2;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.17;QD=30.63;SOR=3.383;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	18290737	rs145097411	T	G	1291.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.60;QD=27.48;SOR=0.919;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr11	18290859	rs1136743	C	T	1767.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.16;QD=43.12;SOR=1.501;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr11	18290874	rs1136747	T	C	1681.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.71;QD=44.26;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr11	18290880	rs28720026	C	G	1681.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.71;QD=44.26;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr11	18290901	rs34551030	GTT	ACC	2041.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=47.11;QD=44.39;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr11	18290906	rs35474820	G	A	1996.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.26;QD=44.37;SOR=0.929;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr11	18305333	rs2049129	T	C	5689.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:2,207:0.99:209
chr11	18333061	rs11024618	T	A	190.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.165;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=-0.690;QD=7.07;ReadPosRankSum=1.005;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:10,17:0.63:27
chr11	18369611	rs4150639	C	T	4081.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr11	18379446	rs202243676	CA	C	115.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.365;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=5.103;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.10;ReadPosRankSum=0.554;SOR=0.442;set=HC	GT:AD:AF:DP	0/1:37,18:0.33:55
chr11	18428637	rs113340412	A	ATT	3935.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.610;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=3.339;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.29;ReadPosRankSum=0.342;SOR=0.316;set=HC	GT:AD:AF:DP	1/1:7,162:0.96:169
chr11	18434524	rs111249399	CCCTCCCTCCCTTCCTT	C	1451.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.41;QD=43.99;SOR=4.112;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr11	18467821	rs2658565	T	C	5593.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr11	18467898	rs12806009	C	A	3184.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr11	18478112	rs3839960	C	CAG	867.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr11	18487425	rs2658563	A	G	1647.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr11	18503159	rs2279900	C	T	5366.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr11	18505632	rs2279902	G	A	1588.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr11	18536215	rs12574333	G	T	906.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr11	18537800	rs7942548	CA	TG	490.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr11	18548546	rs2292179	A	G	5404.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr11	18548574	rs1857908	T	C	3517.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr11	18555901	rs56151250	C	G	1926.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.69;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr11	18555949	rs55999230	T	C	2611.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:3,104:0.97:107
chr11	18586344	rs3832729	C	CAT	3922.73	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr11	18591645	rs2305166	A	G	681.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr11	18591715	rs11445836	T	TA	1007.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.732;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.39;MQRankSum=0.756;QD=12.92;ReadPosRankSum=1.887;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:15,63:0.81:78
chr11	18600322	rs10500835	T	G	2678.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr11	18610041	rs61884724	C	T	1049.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr11	18631527	rs11024731	T	C	5499.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr11	18632984	rs10128711	T	C	7213.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr11	18636504	rs61884737	T	C	14554.77	.	AC=2;AF=1.00;AN=2;DB;DP=567;set=Intersection	GT:AD:AF:DP	1/1:5,546:0.99:551
chr11	18720304	rs7946446	C	G	1011.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr11	18731004	rs72880717	C	G	3551.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr11	18732386	rs56412752	A	C	3507.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:5,131:0.96:136
chr11	18732426	rs4237728	T	G	2087.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr11	18737361	.	A	G	1280.77	.	AC=2;AF=1.00;AN=2;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr11	18738329	rs61886891	C	T	3260.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr11	18738575	rs61886892	A	C	4461.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr11	18741910	.	CT	C	39.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.057;ClippingRankSum=-0.000;DP=12;ExcessHet=3.0103;FS=3.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.41;ReadPosRankSum=-0.000;SOR=0.069;set=HC	GT:AD:AF:DP	0/1:4,5:0.56:9
chr11	18743180	rs10832975	C	G	9128.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:0,333:1.00:333
chr11	18743396	rs66751057	T	TG	1693.73	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:3,56:0.95:59
chr11	18763698	rs4757706	A	G	1224.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr11	18764026	rs4757707	G	C	1867.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr11	18764113	rs2278732	G	A	555.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr11	18771041	rs2028897	G	C	1570.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr11	18793360	rs4075664	T	C	479.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	18885067	rs36002518	C	T	4728.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr11	18955744	rs11599929	C	T	10403.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:4,372:0.99:376
chr11	18978456	rs7106147	G	A	5692.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr11	18994005	rs7114481	T	C	4161.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr11	19077755	rs11024969	A	C	4133.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.06;SOR=0.823;set=HC	GT:AD:AF:DP	1/1:0,96:1.00:96
chr11	19077765	rs10833049	T	C	4262.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.50;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,98:1.00:98
chr11	19077904	rs11024970	T	G	2629.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr11	19078022	rs10833050	T	C	746.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	19167850	rs2271001	A	G	5179.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr11	19169319	rs146892489	T	TCC	791.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.505;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.99;ReadPosRankSum=0.243;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:9,24:0.73:33
chr11	19186826	rs2042687	A	T	947.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr11	19188122	rs2242458	A	G	370.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr11	19191851	rs7114038	A	G	226.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr11	19194141	rs7111850	T	C	403.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr11	19251968	rs1863382	T	C	1645.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr11	19252427	rs793252	G	T	2023.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr11	19256250	rs793269	C	T	1926.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr11	19372616	rs10655705	G	GGA	5463.73	.	AC=2;AF=1.00;AN=2;DB;DP=131;MQ=60.25;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr11	19955500	rs1372989	A	G	6288.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr11	19961457	rs11423145	C	CT	336.75	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:5,21:0.81:26
chr11	19967872	rs67192906	T	C	1980.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr11	19970558	rs2585773	T	C	3873.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr11	19970579	rs2707084	C	T	3244.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr11	20057371	rs6483634	T	G	2493.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr11	20065673	rs3802799	G	T	4631.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:1,172:0.99:173
chr11	20065779	rs3802800	C	G	3518.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr11	20067064	rs7125647	C	T	7979.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:2,298:0.99:300
chr11	20072779	rs6483635	C	T	5453.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.60;SOR=0.805;set=HC	GT:AD:AF:DP	1/1:0,205:1.00:205
chr11	20089792	rs1442711	G	C	13213.77	.	AC=2;AF=1.00;AN=2;DB;DP=504;set=Intersection	GT:AD:AF:DP	1/1:3,498:0.99:501
chr11	20089944	rs1442710	T	C	4341.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:1,166:0.99:167
chr11	20089978	rs1442709	A	G	2457.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:1,77:0.99:78
chr11	20099112	rs4757028	A	T	6304.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr11	20099399	rs6483641	G	T	901.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr11	20099541	rs6483642	C	T	4465.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr11	20099767	rs7121301	A	C	1636.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.97;SOR=3.202;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr11	20101704	rs1867114	C	T	3461.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr11	20101744	rs1867115	C	A	3463.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr11	20101769	rs3758695	C	T	2938.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr11	20104847	rs10657903	A	AGG	806.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr11	20112373	rs2289560	A	G	2005.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr11	20112417	rs2243624	A	C	2311.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr11	20122392	rs2245314	C	A	1670.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr11	20124914	rs2243411	A	C	6488.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr11	20129376	rs74459757	C	T	1181.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:2,45:0.96:47
chr11	20139632	rs2245836	G	C	5890.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.353;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=3.617;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=28.05;ReadPosRankSum=-0.853;SOR=2.326;set=HC	GT:AD:AF:DP	1/1:2,208:0.99:210
chr11	20178551	rs10717537	CG	C	1911.73	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr11	20385228	rs3808991	T	C	358.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr11	20398034	rs10741834	T	C	4390.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr11	20403825	rs7926967	A	T	1290.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr11	20403904	rs10766664	G	C	479.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr11	20404506	rs2403587	T	C	682.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.549;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=14.53;ReadPosRankSum=0.283;SOR=0.730;set=HC	GT:AD:AF:DP	1/1:3,44:0.94:47
chr11	20404613	rs3824886	T	G	2882.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr11	20404757	rs3781679	T	C	4334.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr11	20411199	rs56308542	TAAAA	T	1321.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=37.76;SOR=1.697;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr11	20411418	rs7937501	G	C	1940.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.19;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr11	20411424	rs7937204	A	G	1768.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.22;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr11	20419028	rs7934372	T	C	2246.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr11	20424326	rs10833319	A	G	640.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr11	20429454	rs10741836	T	C	3295.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr11	20448531	rs12797994	G	A	79.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=15.98;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr11	20473655	rs1001669	T	G	784.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr11	20515555	rs6483697	G	A	1953.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr11	20529886	rs6483700	G	A	4204.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr11	20623156	rs1443549	C	G	5764.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr11	20639400	rs7925597	A	G	2565.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr11	20639457	rs11025653	A	G	2014.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr11	20648418	rs4923548	C	T	1839.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr11	20652148	rs111750026	CAT	C	2110.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr11	20660149	rs72932948	C	T	2561.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr11	20673832	rs72932998	C	A	2828.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr11	20676417	rs1401793	C	T	5843.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:1,222:1.00:223
chr11	20699394	rs1793003	C	G	1908.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr11	20805286	rs8176785	G	A	5938.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.804;ClippingRankSum=0.000;DB;DP=228;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.39;ReadPosRankSum=-1.517;SOR=0.919;set=HC	GT:AD:AF:DP	1/1:2,223:0.99:225
chr11	20949115	rs2293241	C	T	1369.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr11	20949763	rs4363596	C	T	588.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr11	20959185	rs1880088	A	T	965.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr11	20959429	rs1880087	T	C	3906.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr11	20959482	rs1880086	G	C	2629.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr11	20959533	rs1880085	G	A	1060.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr11	21305927	rs4151053	T	C	4889.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr11	21306113	rs4151054	A	C	1536.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr11	21581665	rs7119475	C	T	1164.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr11	21581805	rs8176789	C	T	3760.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr11	21581997	rs8176790	C	T	616.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr11	21592228	rs4922847	C	A	1525.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr11	22239661	.	TCA	T	90	.	AC=1;AF=0.500;AN=2;BRF=0.23;FR=0.5000;HP=1;HapScore=3;MGOF=8;MMLQ=28;MQ=59.42;NF=5;NR=1;PP=90;QD=15.6666666667;SC=GTTTGAAATATCACACACACA;SbPval=0.91;Source=Platypus;TC=20;TCF=13;TCR=7;TR=6;WE=22239670;WS=22239651;set=Platypus	GT:AD:AF:DP	0/1:14,6:0.30:20
chr11	22297606	rs5790245	AT	A	297.92	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.521;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=5.679;MLEAC=2;MLEAF=1.000;MQ=60.37;MQRankSum=0.574;QD=11.92;ReadPosRankSum=0.447;SOR=2.419;set=HC	GT:AD:AF:DP	1/1:4,21:0.84:25
chr11	22297770	rs11026488	G	C	4022.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr11	22301410	rs5790246	CT	C	182.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.364;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.31;ReadPosRankSum=-1.392;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:7,18:0.72:25
chr11	22364758	rs2278751	C	T	4091.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr11	22391534	rs2665677	G	A	1201.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr11	22397739	rs2248436	A	C	555.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	22398830	rs1374718	A	G	209.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr11	22647366	rs3740615	G	A	2293.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr11	22707467	rs395398	A	T	395.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr11	22747745	rs337448	A	C	801.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr11	22851172	rs2286811	C	T	3229.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:2,119:0.98:121
chr11	22868937	rs2302423	G	A	754.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr11	22881002	rs3213706	C	T	1704.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr11	24750842	rs7128434	G	A	3072.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr11	24759855	rs1564992	G	A	4622.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr11	24784862	rs2716532	A	T	1176.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr11	24998252	.	CAAAAA	C,CAAA	1011.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.424;ClippingRankSum=0.000;DP=109;ExcessHet=3.0103;FS=4.971;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=17.44;ReadPosRankSum=0.911;SOR=0.242;set=HC	GT:AD:AF:DP	1/2:10,19,29:0.33,0.50:58
chr11	26353991	rs56225203	T	TA	308.86	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.569;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=5.351;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.53;ReadPosRankSum=1.654;SOR=3.312;set=HC	GT:AD:AF:DP	0/1:13,28:0.68:41
chr11	26481497	rs12277506	A	G	2985.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:2,107:0.98:109
chr11	26481611	rs2047099	G	A	6710.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr11	26484496	rs7942432	G	C	443.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr11	26552702	rs293937	T	C	1685.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr11	26574766	.	G	GTTTTTT	391.74	.	AC=2;AF=1.00;AN=2;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.53;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr11	26574771	rs56104576	G	T	601.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=60.18;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr11	26574777	rs56197314	G	T	676.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.94;QD=48.34;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr11	26574783	rs56325113	G	T	698.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.95;QD=38.82;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr11	26588804	rs293976	C	T	973.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr11	26619872	rs7112022	T	C	1656.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr11	26620101	rs10835009	T	C	1381.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr11	26645894	rs1012552	A	T	580.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr11	26655624	rs7929611	T	C	2802.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr11	26655641	rs75607977	AA	TT	620.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.253;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=3.309;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.18;ReadPosRankSum=0.427;SOR=1.409;set=HC	GT:AD:AF:DP	0/1:24,37:0.61:61
chr11	26655658	rs7943086	G	A	5234.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr11	26656370	rs7933233	T	C	1196.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr11	26656563	rs7946841	C	T	4381.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr11	26656714	rs10835033	C	G	1126.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:2,41:0.95:43
chr11	26663284	rs10835039	T	C	868.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr11	26663298	rs11603910	T	A	706.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.56;SOR=3.407;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr11	26663304	rs57264690	A	T	1400.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.86;SOR=3.407;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr11	26663394	rs10835040	A	G	4366.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr11	26677867	rs10835050	T	C	4925.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr11	26677947	rs10835051	C	T	3288.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr11	26694812	rs4278475	C	T	1254.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr11	26694842	rs4551716	C	T	2037.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr11	26694979	rs4369354	A	G	7965.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:1,304:1.00:305
chr11	26702482	rs10767569	T	A	723.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr11	26702664	rs10734383	C	T	1618.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr11	26705124	rs3924552	C	G	370.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr11	26705310	rs3924551	A	G	2030.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr11	26734209	rs10742156	C	T	10900.77	.	AC=2;AF=1.00;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	1/1:2,407:1.00:409
chr11	27076977	rs2305095	C	T	808.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr11	27077118	rs10767598	C	T	3020.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr11	27379127	rs3741407	C	G	1660.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr11	27390089	rs2447997	T	C	6779.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr11	27401743	rs2472623	A	T	2707.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:2,101:0.98:103
chr11	27401940	rs2472622	T	A	1892.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr11	27412535	rs12273521	C	T	1621.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr11	27412782	rs35556457	CTTT	C	1483.73	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;QD=30.91;SOR=2.448;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr11	27413855	rs1871251	T	C	1131.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr11	27493630	rs200956245	TC	T	379.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.12;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr11	27523164	rs151336878	T	TGAAGTTAAAATTTCAGGC	2137.73	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:2,81:0.98:83
chr11	27523186	rs10835188	G	T	1884.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr11	27679662	rs2353512	T	C	8277.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr11	27695910	rs10835210	C	A	481.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr11	27910923	rs6484341	T	A	7253.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr11	28045430	rs34088899	AT	A	345.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	28106058	rs997555	C	G	887.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr11	28113094	.	TA	T	103.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.350;ClippingRankSum=0.000;DP=152;ExcessHet=3.0103;FS=2.053;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=3.246;QD=0.88;ReadPosRankSum=-2.047;SOR=0.967;set=HC	GT:AD:AF:DP	0/1:93,25:0.21:118
chr11	30358033	.	CT	C	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.136;ClippingRankSum=0.000;DP=56;ExcessHet=3.0103;FS=3.245;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.73;ReadPosRankSum=0.710;SOR=1.296;set=HC	GT:AD:AF:DP	0/1:44,12:0.21:56
chr11	30438948	rs492604	C	T	714.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.62;SOR=2.948;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr11	30438958	rs11354702	CT	C	200.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.597;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=3.701;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.12;ReadPosRankSum=0.340;SOR=2.448;set=HC	GT:AD:AF:DP	0/1:4,18:0.82:22
chr11	31123625	.	G	GA	81.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.143;ClippingRankSum=0.000;DP=48;ExcessHet=3.0103;FS=2.268;MLEAC=1;MLEAF=0.500;MQ=59.77;MQRankSum=1.447;QD=1.82;ReadPosRankSum=1.529;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:32,13:0.29:45
chr11	31458730	rs7479413	T	G	930.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr11	31648529	rs2273943	G	A	399.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr11	31653956	rs4922872	C	A	5124.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:2,201:0.99:203
chr11	31671543	rs75155674	A	G	230.78	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr11	31811460	.	CT	C	188.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.489;ClippingRankSum=0.000;DP=100;ExcessHet=3.0103;FS=4.297;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.56;ReadPosRankSum=2.190;SOR=0.284;set=HC	GT:AD:AF:DP	0/1:27,26:0.49:53
chr11	31811645	rs36043815	C	CA	52.86	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=32;ExcessHet=3.0103;FS=3.522;MLEAC=1;MLEAF=0.500;MQ=60.34;MQRankSum=0.282;QD=5.87;ReadPosRankSum=0.282;SOR=0.515;set=HC	GT:AD:AF:DP	0/1:2,7:0.78:9
chr11	31815362	rs667773	G	A	3565.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:1,128:0.99:129
chr11	31838252	rs5790869	C	CG	1152.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr11	32113057	rs223045	A	G	1247.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr11	32118665	.	CT	C	631.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.938;ClippingRankSum=0.000;DP=171;ExcessHet=3.0103;FS=2.486;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.05;ReadPosRankSum=-1.662;SOR=0.550;set=HC	GT:AD:AF:DP	0/1:83,73:0.47:156
chr11	32118925	rs223073	A	G	2119.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr11	32122003	rs2281411	C	A	4153.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr11	32122020	rs2073223	T	G	4776.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr11	32122268	rs223065	C	A	687.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	32124685	rs223059	G	A	8807.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.06;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,338:1.00:338
chr11	32124978	rs4876	T	C	6387.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:2,240:0.99:242
chr11	32125855	rs223058	A	G	1591.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr11	32125961	rs11529889	C	T	599.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr11	32451978	.	CAGAG	C	47.73	.	AC=1;AF=0.500;AN=2;DP=14;set=Intersection	GT:AD:AF:DP	0/1:10,3:0.23:13
chr11	32452001	rs72267419	GGAGA	G	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.539;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.68;ReadPosRankSum=0.000;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:19,4:0.17:23
chr11	32608473	rs201881	G	A	1248.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr11	32610388	rs201877	A	T	1864.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr11	32610726	.	C	CT	80.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.785;ClippingRankSum=0.000;DP=67;ExcessHet=3.0103;FS=6.535;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.65;ReadPosRankSum=-1.934;SOR=0.133;set=HC	GT:AD:AF:DP	0/1:36,13:0.27:49
chr11	32610968	rs201876	T	C	435.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr11	32615352	rs66536432	A	AT	2621.73	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr11	32623419	rs77379922	C	T	1203.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr11	32624405	rs201893	C	T	2090.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:1,74:0.99:75
chr11	32657266	rs201854	T	C	1468.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr11	32674627	rs172101	A	G	2730.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr11	32676632	rs61176333	A	T	913.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.51;SOR=4.712;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr11	32676635	rs58867287	C	CATATAT	907.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.23;SOR=4.712;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr11	32676636	rs58870509	C	CAAGATAATA	907.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.78;SOR=4.514;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr11	32676638	rs58027589	T	TAC	817.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=48.10;SOR=4.294;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	32676640	rs58121007	G	GGTC	727.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.48;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr11	32676642	rs57068465	A	ATTAAAGTGTATTTTCCCT	691.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.23;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr11	32949463	rs60934028	A	ATT	1010.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.335;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.51;ReadPosRankSum=-0.462;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:2,41:0.95:43
chr11	32954344	rs1022586	G	A	7038.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr11	32956244	rs7940077	A	G	6606.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr11	32990842	rs6416072	G	T	140.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr11	32996805	rs11032076	C	T	356.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr11	33037466	rs144143644	G	T	1669.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr11	33052893	rs56308649	C	G	1417.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr11	33054856	rs17852859	C	T	1220.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr11	33065567	rs139464903	G	A	2850.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr11	33083263	rs61889262	G	A	2632.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:2,101:0.98:103
chr11	33094215	rs3168277	G	A	1834.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr11	33106908	rs3834432	C	CTTTATAG	3302.73	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr11	33113653	rs7950763	T	C	1886.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr11	33113910	rs113144162	A	AT	3050.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.989;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.67;MQRankSum=0.309;QD=24.41;ReadPosRankSum=0.970;SOR=0.768;set=HC	GT:AD:AF:DP	1/1:1,124:0.99:125
chr11	33183017	rs3736213	A	G	2308.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr11	33307937	.	CTT	C,CT	1102.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.044;ClippingRankSum=0.000;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.21;MQRankSum=0.682;QD=11.61;ReadPosRankSum=0.554;SOR=0.804;set=HC	GT:AD:AF:DP	1/2:16,38,41:0.40,0.43:95
chr11	33308469	rs34698015	G	A	6749.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr11	33360886	rs5790925	AT	A	3080.73	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr11	33362723	rs266470	G	T	979.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr11	33374613	.	A	AT	158.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.373;ClippingRankSum=0.000;DP=83;ExcessHet=3.0103;FS=2.281;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.98;ReadPosRankSum=0.468;SOR=0.420;set=HC	GT:AD:AF:DP	0/1:60,20:0.25:80
chr11	33564123	rs2076623	T	C	15029.77	.	AC=2;AF=1.00;AN=2;DB;DP=558;set=Intersection	GT:AD:AF:DP	1/1:2,548:1.00:550
chr11	33581153	rs2076627	T	C	1616.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr11	33604885	rs2273117	C	T	1313.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr11	33604960	rs2273115	C	T	3245.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr11	33628103	rs2076626	T	G	1333.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr11	33628117	rs2076625	A	C	1664.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr11	33640104	rs768474	A	C	5747.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr11	33667333	rs1033543	A	G	6768.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr11	33667596	rs1033542	T	C	429.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr11	33719821	rs831611	T	C	721.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr11	33721175	rs4755893	G	C	2667.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr11	33721261	rs4755894	T	G	826.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr11	33722084	rs149234067	G	T	1477.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.740;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.71;MQRankSum=-0.096;QD=26.39;ReadPosRankSum=-0.946;SOR=0.490;set=HC	GT:AD:AF:DP	1/1:1,55:0.98:56
chr11	33773161	rs7479064	G	C	941.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.45;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr11	33775982	rs2272065	A	G	829.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr11	33880896	rs3740616	T	A	1569.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:1,62:0.98:63
chr11	33886294	rs2038602	A	G	6515.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr11	33891357	rs11032432	G	C	866.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr11	34093349	rs10718447	AT	A	952.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr11	34098283	.	G	GT	118.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.833;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=0.808;QD=4.57;ReadPosRankSum=0.149;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:12,14:0.54:26
chr11	34107785	rs4755360	G	A	3615.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr11	34113717	rs2982592	C	T	3751.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr11	34135183	.	CAA	C	324.87	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.334;ClippingRankSum=0.000;DP=53;ExcessHet=3.0103;FS=1.939;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=0.000;QD=7.38;ReadPosRankSum=-0.102;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:24,20:0.45:44
chr11	34149199	rs2957512	T	C	971.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr11	34152939	rs2957516	T	C	5560.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr11	34154641	rs2957518	C	T	9534.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:0,368:1.00:368
chr11	34158411	rs2982615	A	G	2846.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr11	34158431	rs2957521	T	C	3060.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr11	34162549	rs79872650	G	A	1995.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:1,74:0.99:75
chr11	34163705	rs2982612	T	C	5279.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr11	34176214	rs2957525	A	G	2878.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr11	34188982	rs7120749	A	G	2060.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr11	34189564	rs4756111	A	G	7898.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:1,291:1.00:292
chr11	34226041	rs2955944	A	G	5065.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr11	34470679	rs769218	G	A	756.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr11	34482908	rs769217	C	T	4957.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr11	34678435	rs435537	C	G	4012.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr11	34680053	rs3818514	G	A	3386.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr11	34680598	rs11032804	C	A	1267.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr11	34904399	rs2288667	C	T	3126.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr11	34904509	rs2288668	T	G	995.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr11	34905145	rs2303957	T	C	693.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:2,30:0.94:32
chr11	34909827	rs35393135	GA	G	1627.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr11	34909833	rs61752923	A	C	1693.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr11	34909926	rs1571133	T	G	3218.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr11	34910077	rs1571134	G	A	618.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr11	34910433	rs1977421	A	G	1240.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.40;SOR=0.735;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr11	34912289	rs2915224	T	A	383.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr11	34916484	rs1326940	A	G	2021.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr11	34916657	rs61734605	C	T	2313.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr11	34916710	rs1326941	A	G	1238.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr11	34916785	rs1326942	A	G	459.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr11	34918273	rs34774694	G	GCAA	3834.73	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:3,86:0.97:89
chr11	34918375	rs2986429	A	G	5311.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr11	34918540	rs144924691	CACA	C	1750.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr11	34918570	rs72930433	G	A	844.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr11	34937901	rs2956112	A	G	5239.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.46;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,198:1.00:198
chr11	34938074	rs112032820	C	T	851.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.731;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=18.93;ReadPosRankSum=-0.544;SOR=0.409;set=HC	GT:AD:AF:DP	1/1:1,44:0.98:45
chr11	34938115	rs2956110	C	A	1228.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr11	34938265	rs2956109	C	T	3157.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr11	34953088	rs34345153	G	GT	1165.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.975;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=2.734;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=0.313;QD=19.11;ReadPosRankSum=0.181;SOR=0.269;set=HC	GT:AD:AF:DP	1/1:2,59:0.97:61
chr11	34963416	rs2986407	T	C	1626.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr11	34969112	rs11539202	A	G	5367.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:2,199:0.99:201
chr11	34978892	rs2243948	G	A	1613.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:1,54:0.98:55
chr11	34982146	rs2732554	T	G	3146.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.71;SOR=1.997;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr11	34982146	.	TTC	GTA	2508	.	AC=2;AF=1.00;AN=2;BRF=0.32;FR=1.0000;HP=1;HapScore=1;MGOF=6;MMLQ=28;MQ=60.0;NF=13;NR=43;PP=2508;QD=20;SC=AAAGAGCTTATTCAGTCTTAA;SbPval=0.62;Source=Platypus;TC=60;TCF=15;TCR=45;TR=56;WE=34982156;WS=34982136;set=Platypus	GT:AD:AF:DP	1/1:4,56:0.93:60
chr11	34982148	rs2767036	C	A	3146.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.61;SOR=2.139;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr11	34991727	rs497582	T	C	8156.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:1,308:1.00:309
chr11	34999484	rs733567	G	T	786.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr11	34999745	rs10768108	C	G	2012.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr11	35161288	rs12365962	G	A	403.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr11	35453796	rs11344760	GC	G	961.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr11	35456453	rs675227	G	C	1214.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr11	36031593	rs262404	G	A	2766.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr11	36103228	rs1138807	A	G	7637.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:1,290:1.00:291
chr11	36293048	rs7107433	G	A	2221.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr11	36298555	rs2289986	C	T	579.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr11	36299976	rs34980490	A	T	3275.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr11	36302410	.	G	GA	206.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.391;ClippingRankSum=0.000;DP=84;ExcessHet=3.0103;FS=0.979;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.662;QD=2.68;ReadPosRankSum=1.665;SOR=0.871;set=HC	GT:AD:AF:DP	0/1:56,21:0.27:77
chr11	36311014	rs7939948	G	T	1919.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr11	36397655	.	A	AT	123.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.778;ClippingRankSum=0.000;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.883;QD=1.08;ReadPosRankSum=0.728;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:93,22:0.19:115
chr11	36422792	rs330261	G	A	7688.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr11	36453247	rs746762	C	A	889.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr11	36453506	rs746761	T	C	2030.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr11	36459130	rs4756316	T	C	768.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr11	36484208	rs514352	T	C	2550.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr11	36514290	rs2303439	T	C	437.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr11	36518824	rs3830511	T	TA	2150.73	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:2,89:0.98:91
chr11	36595600	rs3740955	A	G	5129.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:2,189:0.99:191
chr11	36669778	rs1566245	C	T	2282.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr11	42209105	rs11416548	G	GA	1437.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.942;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=1.745;MLEAC=1;MLEAF=0.500;MQ=60.45;MQRankSum=0.729;QD=16.34;ReadPosRankSum=0.611;SOR=1.275;set=HC	GT:AD:AF:DP	1/1:10,78:0.89:88
chr11	43357020	rs5743252	A	G	843.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr11	43357037	rs5743253	A	G	695.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	43413158	rs67884453	TTGCG	T	1114.73	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:9,46:0.84:55
chr11	43419087	.	CTT	C	138.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.320;ClippingRankSum=0.000;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=0.000;QD=2.89;ReadPosRankSum=-0.613;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:36,12:0.25:48
chr11	43419451	.	CGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT	C,CGT	2792.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.13;QD=39.33;SOR=2.406;set=HC	GT:AD:AF:DP	1/2:0,14,57:0.20,0.80:71
chr11	43472895	rs6485426	G	C	4544.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr11	43702581	rs4573669	G	A	766.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr11	43702615	rs4573668	G	C	692.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	43772549	rs12801203	A	G	849.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.75;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr11	43775734	rs4643069	A	G	544.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr11	43776481	rs7115919	C	T	4896.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr11	43852491	rs6485471	T	C	3010.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr11	43861748	rs10734518	G	A	629.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	43904422	.	G	A	1032.77	.	AC=2;AF=1.00;AN=2;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr11	43908230	rs7101434	C	T	6052.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr11	43911365	rs2434478	T	C	2233.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr11	43940566	rs7926534	T	C	318.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr11	43940644	rs1048928	G	T	950.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr11	43946967	rs1973717	A	G	2424.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr11	43947990	rs12797684	T	C	2335.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr11	43954812	rs2434476	T	C	1609.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr11	43964842	rs7077	G	C	2386.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.767;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.86;ReadPosRankSum=-0.727;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:2,94:0.98:96
chr11	44080210	rs2074051	T	C	3329.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr11	44089161	rs178514	G	A	3688.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr11	44096238	rs178521	G	A	2365.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr11	44096324	.	T	TTC	171.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.105;ClippingRankSum=-0.000;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=17.17;ReadPosRankSum=-1.687;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:3,7:0.70:10
chr11	44096330	rs61491891	C	T	130.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=21.79;ReadPosRankSum=-1.960;SOR=2.093;set=HC	GT:AD:AF:DP	0/1:3,3:0.50:6
chr11	44096334	.	C	T	88.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;ClippingRankSum=-0.000;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=17.75;ReadPosRankSum=-1.645;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:3,2:0.40:5
chr11	44097226	rs178523	A	G	2415.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr11	44104701	rs79395013	C	CCT	5134.73	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr11	44146257	rs10769018	A	G	1853.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr11	44151457	rs7125352	T	C	3171.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr11	44151480	rs11037881	G	T	4014.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:1,149:0.99:150
chr11	44151577	rs11037882	T	A	9493.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:2,356:0.99:358
chr11	44257708	rs151110171	GGT	G	113.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.683;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.34;ReadPosRankSum=0.108;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:73,12:0.14:85
chr11	44296828	rs11037927	C	T	2745.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr11	44297054	rs10769028	T	C	12376.77	.	AC=2;AF=1.00;AN=2;DB;DP=469;set=Intersection	GT:AD:AF:DP	1/1:0,465:1.00:465
chr11	44297253	rs11037929	A	G	2656.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:1,89:0.99:90
chr11	44297343	rs11037930	C	A	703.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	44331309	rs12421995	G	A	1589.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr11	44331509	rs3824915	C	G	9026.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:2,345:0.99:347
chr11	44585933	rs934178	T	C	3048.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr11	44608866	rs7930303	T	C	1239.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr11	44636684	rs12788360	G	T	1381.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr11	44636839	rs883752	C	T	6005.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr11	44640268	rs1139971	A	G	4231.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr11	44919495	rs10838380	C	T	1599.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr11	44924950	rs5791652	GC	G	3094.73	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr11	44928135	rs2306665	G	A	938.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr11	44940828	rs2291334	G	A	6124.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr11	44950784	rs835990	G	A	3015.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr11	44952285	rs10838390	C	T	2138.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr11	44959213	rs2279363	C	T	488.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	44959924	rs2306666	G	A	4333.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:1,158:0.99:159
chr11	44968756	rs4755920	G	A	507.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr11	45204071	rs1078930	A	G	892.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr11	45234877	rs11038356	T	C	7329.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:1,273:1.00:274
chr11	45235246	rs7105035	T	C	3901.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr11	45671452	rs57330063	G	A	7564.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:4,280:0.99:284
chr11	45672261	rs3802762	A	G	4818.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:2,179:0.99:181
chr11	45832935	rs1139266	G	A	300.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr11	45834044	rs4756027	C	T	3036.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr11	45834198	rs7943306	T	C	4517.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr11	45868850	rs11394694	C	CG	4128.73	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr11	45877529	rs2292913	A	G	5261.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr11	45877688	rs2292912	C	G	1658.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr11	45883914	rs4755343	T	C	755.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr11	45891508	rs4755345	A	G	800.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr11	45926445	rs2271847	T	C	14861.77	.	AC=2;AF=1.00;AN=2;DB;DP=578;set=Intersection	GT:AD:AF:DP	1/1:0,573:1.00:573
chr11	45935253	rs2271845	C	T	1118.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr11	45935384	rs1132349	A	G	4888.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr11	45936035	rs3802758	G	A	7253.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr11	45937267	rs10742772	C	T	15622.77	.	AC=2;AF=1.00;AN=2;DB;DP=605;set=Intersection	GT:AD:AF:DP	1/1:0,601:1.00:601
chr11	45937968	rs3215273	CTA	C	1209.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr11	45944994	rs33927614	G	GC	3842.73	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr11	45949201	rs884668	C	T	4227.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:3,158:0.98:161
chr11	45949534	rs939105	C	T	7496.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:2,265:0.99:267
chr11	45957292	rs35995547	TA	T	261.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.164;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.90;ReadPosRankSum=1.423;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:2,20:0.91:22
chr11	45959669	rs10742773	C	T	2179.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr11	46105688	rs2932515	G	A	4073.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr11	46342081	rs67946579	TG	T	2881.73	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr11	46342259	rs79068197	A	AG	11185.73	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr11	46397012	.	C	T	81.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.717;ClippingRankSum=0.000;DP=91;ExcessHet=3.0103;FS=1.153;MLEAC=1;MLEAF=0.500;MQ=53.75;MQRankSum=-4.996;QD=0.91;ReadPosRankSum=-2.049;SOR=0.457;set=HC	GT:AD:AF:DP	0/1:76,14:0.16:90
chr11	46404340	.	GCC	G	615.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.063;ClippingRankSum=0.000;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.11;ReadPosRankSum=0.613;SOR=0.877;set=HC	GT:AD:AF:DP	0/1:9,25:0.74:34
chr11	46686260	rs10838610	G	A	3486.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr11	46694313	rs67065551	GTC	G	4369.73	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr11	46699494	rs34845803	GA	G	93.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.245;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.36;ReadPosRankSum=0.803;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:47,22:0.32:69
chr11	46702920	rs4268467	T	C	3433.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr11	46703002	.	CT	C	43.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.142;ClippingRankSum=0.000;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.83;ReadPosRankSum=1.892;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:41,12:0.23:53
chr11	46722731	rs4752928	T	C	4080.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr11	46744925	rs2070852	G	C	10483.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	1/1:0,373:1.00:373
chr11	46760466	rs3136515	G	T	675.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	46760756	rs3136516	G	A	2800.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr11	46776697	rs4237546	A	G	137.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr11	46802094	rs6485691	C	A	885.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr11	46812227	rs7940578	T	C	629.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr11	46822686	rs10734549	C	A	2425.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr11	46837625	rs59649961	AC	A	584.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.98;SOR=2.147;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr11	46837633	rs58152993	AT	A	652.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.80;SOR=2.049;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr11	46840119	rs67178247	TG	T	1455.73	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr11	46889713	rs2306026	T	C	1169.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr11	46890165	rs3816614	C	T	5330.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr11	46890388	rs2290884	C	G	3407.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:1,113:0.99:114
chr11	46893108	rs2306029	T	C	3851.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr11	46897253	rs2306032	G	C	6289.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:3,234:0.99:237
chr11	46897995	rs964551	G	T	4342.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:2,163:0.99:165
chr11	46898771	rs6485702	T	C	1822.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr11	46907827	rs2306027	C	T	3713.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr11	46911457	rs2306035	T	C	1862.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr11	46911704	rs2306036	C	T	1949.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr11	46914583	rs10838631	T	C	3735.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr11	46914598	rs10769215	A	G	4071.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr11	46917983	rs898604	G	A	3254.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr11	46969616	rs2867207	T	C	3723.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr11	47009041	.	G	GT	317.73	.	AC=2;AF=1.00;AN=2;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr11	47185680	rs11039114	G	A	3322.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr11	47188314	rs4752820	T	C	4637.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr11	47188592	rs3740690	T	C	1208.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr11	47204175	rs2279438	A	T	3401.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:1,124:0.99:125
chr11	47238522	rs326212	T	C	3362.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr11	47238665	rs326211	A	G	634.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr11	47251199	rs830085	G	A	1381.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr11	47259668	rs326222	T	C	9101.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	1/1:0,332:1.00:332
chr11	47267408	.	C	CGT	951.73	.	AC=1;AF=0.500;AN=2;DP=78;set=Intersection	GT:AD:AF:DP	0/1:10,36:0.78:46
chr11	47298360	rs326214	G	A	7666.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr11	47306630	rs35233100	C	T	4369.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr11	47307332	rs148495681	G	GTCATTA	430.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;MQ=61.64;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr11	47331116	rs1017594	T	C	4148.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr11	47354905	rs11570115	T	C	3961.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:3,154:0.98:157
chr11	47362431	rs2697926	A	G	1244.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr11	47364762	rs896818	A	G	6055.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr11	47371484	rs11570050	AG	A	5648.73	.	AC=2;AF=1.00;AN=2;DB;DP=182;MQ=60.12;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr11	47380061	rs10734557	A	C	4204.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr11	47380340	rs3740688	G	T	3995.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr11	47380593	rs3740689	G	A	1459.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr11	47380688	rs35284836	GGAA	G	670.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr11	47431728	rs2010519	A	G	5339.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr11	47432034	rs755554	G	C	1740.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr11	47434986	rs2293576	G	A	7701.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr11	47436531	rs11039228	G	T	2686.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr11	47440758	rs2293579	G	A	6938.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr11	47447346	rs10838709	C	T	2546.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr11	47460098	rs10769267	C	T	802.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr11	47460306	rs7126210	A	G	4835.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr11	47462837	rs10716680	AG	A	1924.73	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr11	47463483	rs34729771	AG	A	786.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr11	47469439	rs7111873	A	G	8628.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	1/1:0,330:1.00:330
chr11	47500400	rs12224672	C	T	381.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr11	47505869	rs372677901	CA	C	72.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.897;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.69;ReadPosRankSum=1.437;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:80,26:0.25:106
chr11	47587577	rs58926533	TC	T	4640.73	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr11	47600438	rs2280231	C	T	1618.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr11	47609867	rs4486587	G	A	8443.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr11	47611316	rs10769279	C	G	447.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	47652476	rs117523937	A	T	366.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr11	47684450	rs6485766	C	A	650.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr11	47689343	rs10742817	C	T	3731.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr11	47701629	.	G	GA	95.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.223;ClippingRankSum=0.000;DP=103;ExcessHet=3.0103;FS=1.073;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.910;QD=1.10;ReadPosRankSum=-0.590;SOR=0.447;set=HC	GT:AD:AF:DP	0/1:70,17:0.20:87
chr11	47712213	rs7941404	C	T	6619.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:3,254:0.99:257
chr11	47736314	rs4752863	C	G	706.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr11	47765830	.	C	CT	32.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.498;ClippingRankSum=0.000;DP=23;ExcessHet=3.0103;FS=2.307;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.82;ReadPosRankSum=0.327;SOR=1.721;set=HC	GT:AD:AF:DP	0/1:12,6:0.33:18
chr11	47772401	rs11039366	C	T	546.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr11	47774366	rs151189779	A	AAAAC	663.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr11	47775952	rs11039369	A	G	1228.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr11	47776047	rs7928954	G	A	4568.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr11	47776283	rs7929014	C	T	1991.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr11	47786926	rs148666719	A	AAAAAG	812.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.78;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr11	47788663	rs67450550	CGGTGGT	C	772.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr11	47801101	rs7114813	A	G	1872.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr11	47802092	rs200363262	CTT	C	798.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.171;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=4.521;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.30;ReadPosRankSum=0.813;SOR=1.315;set=HC	GT:AD:AF:DP	0/1:15,34:0.69:49
chr11	47806655	.	TAATAGCTA	T	913.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.384;ClippingRankSum=0.000;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=0.000;QD=38.07;ReadPosRankSum=0.000;SOR=4.977;set=HC	GT:AD:AF:DP	0/1:1,23:0.96:24
chr11	47806666	.	TAGAGTACCA	T	840.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.593;ClippingRankSum=-0.000;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.71;MQRankSum=-0.000;QD=36.55;ReadPosRankSum=-0.282;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:3,20:0.87:23
chr11	47806677	.	TCAAAGCATGTA	T	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.691;ClippingRankSum=-0.000;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.68;MQRankSum=-0.000;QD=2.72;ReadPosRankSum=0.777;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:9,6:0.40:15
chr11	47806690	.	TTACAAGGAAAAC	T	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.034;ClippingRankSum=-0.000;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.72;ReadPosRankSum=1.584;SOR=1.230;set=HC	GT:AD:AF:DP	0/1:9,6:0.40:15
chr11	47809748	.	T	C	3670.77	.	AC=2;AF=1.00;AN=2;DP=141;set=Intersection	GT:AD:AF:DP	1/1:3,138:0.98:141
chr11	47813436	rs10742821	C	T	1800.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr11	47814280	rs754434	A	G	3328.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr11	47826090	rs11039402	A	C	2638.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr11	47834346	rs10838773	G	A	2795.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr11	47834592	rs7110289	G	A	2507.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr11	47837408	rs6485786	G	C	4955.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr11	47837638	rs7130715	G	A	2581.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr11	47857253	rs3816605	T	C	7658.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:1,287:1.00:288
chr11	47869200	rs71045524	TG	T	294.37	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.084;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=0.567;QD=18.40;ReadPosRankSum=-0.869;SOR=3.258;set=HC	GT:AD:AF:DP	0/1:2,14:0.88:16
chr11	48118199	rs4752806	G	C	755.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr11	48118347	rs11382316	T	TA	3529.73	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr11	48142528	.	ATT	A,AT	986.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.432;ClippingRankSum=0.000;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.37;MQRankSum=0.590;QD=12.18;ReadPosRankSum=-0.690;SOR=0.640;set=HC	GT:AD:AF:DP	1/2:11,20,50:0.25,0.62:81
chr11	48145247	rs2270992	T	C	1809.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr11	48157869	rs2270994	T	C	5807.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:4,207:0.98:211
chr11	48166267	rs4752904	G	C	5106.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr11	48170870	rs4752908	T	G	2648.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr11	48171793	rs10734565	T	C	2927.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr11	48184971	rs3830431	CCTTT	C	10310.73	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr11	48184983	rs2270990	G	T	10849.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr11	48186110	.	ATTT	A	290.50	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.393;ClippingRankSum=0.000;DP=65;ExcessHet=3.0103;FS=6.107;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=0.000;QD=10.37;ReadPosRankSum=0.188;SOR=2.636;set=HC	GT:AD:AF:DP	0/1:13,15:0.54:28
chr11	48238302	rs1566737	G	T	586.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr11	48238421	rs10769329	T	G	1960.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr11	48266582	rs7120549	A	C	4455.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr11	48267589	rs1503180	A	G	2047.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr11	48285301	rs713325	A	G	932.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr11	48285842	rs1503193	A	G	11111.77	.	AC=2;AF=1.00;AN=2;DB;DP=400;MQ=60.08;set=Intersection	GT:AD:AF:DP	1/1:0,394:1.00:394
chr11	48285856	rs10838850	C	T	10391.77	.	AC=2;AF=1.00;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	1/1:5,383:0.99:388
chr11	48285981	rs76884411	CCTT	C	14398.73	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:1,326:1.00:327
chr11	48286231	rs10838851	T	A	6232.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr11	48286256	rs10838852	C	T	5727.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr11	48346450	rs79776366	A	G	244.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.149;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.44;ReadPosRankSum=1.191;SOR=0.536;set=HC	GT:AD:AF:DP	0/1:21,8:0.28:29
chr11	48346458	rs77295176	A	G	226.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.750;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.87;ReadPosRankSum=1.694;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:25,8:0.24:33
chr11	48346487	rs33950768	TC	T	451.73	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:47,14:0.23:61
chr11	48346513	rs78206553	T	C	906.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.386;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=6.243;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.64;ReadPosRankSum=-1.051;SOR=1.414;set=HC	GT:AD:AF:DP	0/1:79,26:0.25:105
chr11	48346523	rs72911451	C	T	1152.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.592;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=6.962;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.01;ReadPosRankSum=-1.282;SOR=1.475;set=HC	GT:AD:AF:DP	0/1:96,32:0.25:128
chr11	48346535	rs76964780	G	C	1439.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.476;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=7.413;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.79;ReadPosRankSum=-2.075;SOR=1.352;set=HC	GT:AD:AF:DP	0/1:107,40:0.27:147
chr11	48346541	rs75498992	A	T	1646.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.145;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=6.631;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.63;ReadPosRankSum=-1.621;SOR=1.263;set=HC	GT:AD:AF:DP	0/1:124,47:0.27:171
chr11	48346547	rs79042268	C	T	1771.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.615;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=6.171;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.33;ReadPosRankSum=-1.193;SOR=1.215;set=HC	GT:AD:AF:DP	0/1:138,52:0.27:190
chr11	48346551	rs77470587	C	A	1762.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.436;ClippingRankSum=0.000;DB;DP=200;ExcessHet=3.0103;FS=5.982;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.86;ReadPosRankSum=-0.864;SOR=1.176;set=HC	GT:AD:AF:DP	0/1:145,54:0.27:199
chr11	48346579	rs72911452	C	A	2953.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.289;ClippingRankSum=0.000;DB;DP=265;ExcessHet=3.0103;FS=3.025;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.23;ReadPosRankSum=-0.604;SOR=0.913;set=HC	GT:AD:AF:DP	0/1:180,83:0.32:263
chr11	48346588	rs75900655	A	C	3198.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.569;ClippingRankSum=0.000;DB;DP=287;ExcessHet=3.0103;FS=2.189;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.22;ReadPosRankSum=0.605;SOR=0.854;set=HC	GT:AD:AF:DP	0/1:195,90:0.32:285
chr11	48346604	rs75647397	T	G	3451.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:215,105:0.33:320
chr11	48346615	rs73463988	G	A	3702.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:221,117:0.35:338
chr11	48346660	rs138704181	TTTGCTGATC	T	4732.73	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:224,131:0.37:355
chr11	48346681	rs78490540	G	A	3847.77	.	AC=1;AF=0.500;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	0/1:215,140:0.39:355
chr11	48346729	rs73463990	G	C	3489.77	.	AC=1;AF=0.500;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	0/1:216,169:0.44:385
chr11	48346791	rs73463994	C	T	3669.77	.	AC=1;AF=0.500;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	0/1:240,177:0.42:417
chr11	48346822	rs73463997	A	C	3818.77	.	AC=1;AF=0.500;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	0/1:270,184:0.41:454
chr11	48346843	rs73463998	C	T	3852.77	.	AC=1;AF=0.500;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	0/1:269,186:0.41:455
chr11	48346916	rs77069283	G	C	6145.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.818;ClippingRankSum=0.000;DB;DP=411;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.14;ReadPosRankSum=1.083;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:240,166:0.41:406
chr11	48346924	rs72911454	T	C	6399.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.253;ClippingRankSum=0.000;DB;DP=401;ExcessHet=3.0103;FS=0.367;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.16;ReadPosRankSum=0.169;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:229,167:0.42:396
chr11	48346932	rs80285195	G	A	6062.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.086;ClippingRankSum=0.000;DB;DP=408;ExcessHet=3.0103;FS=1.754;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.04;ReadPosRankSum=0.757;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:237,166:0.41:403
chr11	48346961	rs75493089	AA	TG	6234.77	.	AC=1;AF=0.500;AN=2;DB;DP=392;JOINED;set=Intersection	GT:AD:AF:DP	0/1:225,166:0.42:391
chr11	48346999	rs72473367	T	G	6658.77	.	AC=1;AF=0.500;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	0/1:256,182:0.42:438
chr11	48347014	rs72473368	G	A	6885.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.305;ClippingRankSum=0.000;DB;DP=442;ExcessHet=3.0103;FS=0.529;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.61;ReadPosRankSum=1.274;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:260,181:0.41:441
chr11	48347023	rs67077733	C	T	6707.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.044;ClippingRankSum=0.000;DB;DP=446;ExcessHet=3.0103;FS=1.110;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.07;ReadPosRankSum=1.240;SOR=0.630;set=HC	GT:AD:AF:DP	0/1:261,184:0.41:445
chr11	48347067	rs73464001	C	T	3480.77	.	AC=1;AF=0.500;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	0/1:269,172:0.39:441
chr11	48347100	rs73465905	C	T	2844.77	.	AC=1;AF=0.500;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	0/1:270,146:0.35:416
chr11	48347124	rs79019124	A	G	5073.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.545;ClippingRankSum=0.000;DB;DP=404;ExcessHet=3.0103;FS=4.272;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.65;ReadPosRankSum=-0.875;SOR=1.010;set=HC	GT:AD:AF:DP	0/1:260,141:0.35:401
chr11	48347130	rs77395846	C	G	5070.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.189;ClippingRankSum=0.000;DB;DP=387;ExcessHet=3.0103;FS=6.167;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.17;ReadPosRankSum=-1.110;SOR=0.977;set=HC	GT:AD:AF:DP	0/1:249,136:0.35:385
chr11	48347140	rs10838874	T	C	4797.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.140;ClippingRankSum=0.000;DB;DP=377;ExcessHet=3.0103;FS=8.089;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.79;ReadPosRankSum=-0.510;SOR=1.075;set=HC	GT:AD:AF:DP	0/1:248,127:0.34:375
chr11	48347142	rs79891698	C	T	2368.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.896;ClippingRankSum=0.000;DB;DP=372;ExcessHet=3.0103;FS=8.192;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.42;ReadPosRankSum=-0.897;SOR=1.058;set=HC	GT:AD:AF:DP	0/1:245,124:0.34:369
chr11	48347144	rs79124801	T	C	4530.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.581;ClippingRankSum=0.000;DB;DP=359;ExcessHet=3.0103;FS=5.739;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.73;ReadPosRankSum=-0.952;SOR=0.972;set=HC	GT:AD:AF:DP	0/1:233,123:0.35:356
chr11	48347267	rs73465910	T	C	2388.77	.	AC=1;AF=0.500;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	0/1:223,129:0.37:352
chr11	48347306	rs73465911	G	T	2053.77	.	AC=1;AF=0.500;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	0/1:241,115:0.32:356
chr11	48347342	rs76958755	G	A	2978.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.824;ClippingRankSum=0.000;DB;DP=312;ExcessHet=3.0103;FS=5.010;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.73;ReadPosRankSum=0.040;SOR=0.997;set=HC	GT:AD:AF:DP	0/1:215,91:0.30:306
chr11	48347346	rs74590631	A	T	3003.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.275;ClippingRankSum=0.000;DB;DP=290;ExcessHet=3.0103;FS=6.126;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.58;ReadPosRankSum=-0.317;SOR=1.046;set=HC	GT:AD:AF:DP	0/1:199,85:0.30:284
chr11	48347358	rs76274696	C	T	2668.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.413;ClippingRankSum=0.000;DB;DP=271;ExcessHet=3.0103;FS=5.450;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.03;ReadPosRankSum=-1.542;SOR=1.035;set=HC	GT:AD:AF:DP	0/1:185,81:0.30:266
chr11	48347363	rs77814753	C	T	2567.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.659;ClippingRankSum=0.000;DB;DP=265;ExcessHet=3.0103;FS=7.617;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.84;ReadPosRankSum=-1.298;SOR=1.148;set=HC	GT:AD:AF:DP	0/1:184,77:0.30:261
chr11	48347392	rs79127479	T	C	1073.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:162,68:0.30:230
chr11	48347419	rs73465913	A	G	1105.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:141,60:0.30:201
chr11	48347492	rs79775762	G	A	1110.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.918;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.41;ReadPosRankSum=1.173;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:97,35:0.27:132
chr11	48347498	rs78309417	A	T	1084.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.958;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=0.795;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.34;ReadPosRankSum=1.442;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:96,34:0.26:130
chr11	48347539	rs79172951	G	A	303.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:47,18:0.28:65
chr11	48347563	.	CT	C	165	.	AC=1;AF=0.500;AN=2;BRF=0.41;FR=0.5000;HP=7;HapScore=1;MGOF=60;MMLQ=28;MQ=58.22;NF=2;NR=6;PP=165;QD=23.25;SC=CCAAGCCTTACTTTTTTTGTA;SbPval=0.08;Source=Platypus;TC=33;TCF=2;TCR=31;TR=8;WE=48347571;WS=48347553;set=Platypus	GT:AD:AF:DP	1/0:25,8:0.24:33
chr11	48347583	.	G	A	135	.	AC=1;AF=0.500;AN=2;BRF=0.41;FR=0.5000;HP=2;HapScore=2;MGOF=66;MMLQ=28;MQ=57.97;NF=2;NR=4;PP=135;QD=28.2952020912;SC=ATCATGTATAGTTGTATTCCA;SbPval=0.22;Source=Platypus;TC=27;TCF=4;TCR=23;TR=6;WE=48347591;WS=48347573;set=Platypus	GT:AD:AF:DP	1/0:21,6:0.22:27
chr11	48349128	rs76530627	G	A	367.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.672;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=3.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.43;ReadPosRankSum=1.756;SOR=2.147;set=HC	GT:AD:AF:DP	0/1:8,10:0.56:18
chr11	48349128	.	GTA	ATG	407	.	AC=1;AF=0.500;AN=2;BRF=0.29;FR=0.5000;HP=3;HapScore=2;MGOF=59;MMLQ=24;MQ=60.0;NF=9;NR=0;PP=407;QD=51.1630972069;SC=TGTCTTTAAAGTAAAAGTAAA;SbPval=1.0;Source=Platypus;TC=17;TCF=16;TCR=1;TR=9;WE=48349138;WS=48349118;set=Platypus	GT:AD:AF:DP	1/0:8,9:0.53:17
chr11	48349130	rs75661263	A	G	367.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.781;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=3.854;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.63;ReadPosRankSum=1.639;SOR=2.387;set=HC	GT:AD:AF:DP	0/1:7,10:0.59:17
chr11	48349152	rs73465924	A	C	321.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:15,13:0.46:28
chr11	48349171	rs73465926	T	C	514.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:23,20:0.47:43
chr11	48349209	rs73465927	A	C	1004.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:49,45:0.48:94
chr11	48349230	rs74884553	G	A	1884.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.907;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.84;ReadPosRankSum=0.575;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:69,50:0.42:119
chr11	48349235	rs10769662	C	T	1878.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.136;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.15;ReadPosRankSum=0.725;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:73,51:0.41:124
chr11	48349252	rs76041098	G	A	1305.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:81,60:0.43:141
chr11	48349312	rs79572913	A	G	2045.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.143;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=0.665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.63;ReadPosRankSum=1.354;SOR=0.630;set=HC	GT:AD:AF:DP	0/1:67,56:0.46:123
chr11	48349316	rs76607933	T	A	2050.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.560;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.83;ReadPosRankSum=1.120;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:63,52:0.45:115
chr11	48349320	rs77184441	A	T	2016.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.080;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.67;ReadPosRankSum=-0.851;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:55,53:0.49:108
chr11	48349329	rs76765071	C	A	2065.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.624;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.25;ReadPosRankSum=-1.047;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:51,51:0.50:102
chr11	48349377	rs72911466	A	T	594.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.248;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=1.054;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=0.967;QD=10.62;ReadPosRankSum=0.140;SOR=0.506;set=HC	GT:AD:AF:DP	0/1:26,30:0.54:56
chr11	48349389	rs79223613	A	C	1007.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.625;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=0.033;QD=22.90;ReadPosRankSum=-0.475;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:19,25:0.57:44
chr11	48349391	rs76599777	TG	CA	964.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.432;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=0.035;QD=23.53;ReadPosRankSum=-0.382;SOR=0.795;set=HC	GT:AD:AF:DP	0/1:18,23:0.56:41
chr11	48349394	rs78755709	G	A	883.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.748;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=0.036;QD=22.09;ReadPosRankSum=-0.685;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:17,23:0.57:40
chr11	48349407	rs72911467	T	C	365.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.595;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.79;MQRankSum=0.051;QD=13.06;ReadPosRankSum=0.561;SOR=1.284;set=HC	GT:AD:AF:DP	0/1:14,14:0.50:28
chr11	48349425	rs79941850	T	C	300.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:10,12:0.55:22
chr11	48366895	rs72473369	A	C	869.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:46,40:0.47:86
chr11	48366958	rs76319939	T	G	2211.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:168,107:0.39:275
chr11	48366971	rs75689989	GG	CA	4248.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;JOINED;MQ=60.03;set=Intersection	GT:AD:AF:DP	0/1:190,116:0.38:306
chr11	48367050	rs113897236	T	TAG	5939.73	.	AC=1;AF=0.500;AN=2;DB;DP=451;set=Intersection	GT:AD:AF:DP	0/1:272,163:0.37:435
chr11	48367073	rs7941588	A	C	15950.77	.	AC=2;AF=1.00;AN=2;DB;DP=469;set=Intersection	GT:AD:AF:DP	1/1:0,466:1.00:466
chr11	48367097	rs73453179	A	G	3075.77	.	AC=1;AF=0.500;AN=2;DB;DP=485;set=Intersection	GT:AD:AF:DP	0/1:318,163:0.34:481
chr11	48367133	rs79453749	C	A	5010.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.144;ClippingRankSum=0.000;DB;DP=470;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.75;ReadPosRankSum=-1.602;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:323,143:0.31:466
chr11	48367136	rs78927905	C	T	5139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.316;ClippingRankSum=0.000;DB;DP=475;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.91;ReadPosRankSum=-1.371;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:328,143:0.30:471
chr11	48367155	rs75315666	T	A	4437.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.984;ClippingRankSum=0.000;DB;DP=455;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.82;ReadPosRankSum=-0.115;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:323,129:0.29:452
chr11	48367159	rs75667244	C	T	4386.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.291;ClippingRankSum=0.000;DB;DP=437;ExcessHet=3.0103;FS=0.577;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.11;ReadPosRankSum=-0.384;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:309,125:0.29:434
chr11	48367163	rs74650698	A	G	4282.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.655;ClippingRankSum=0.000;DB;DP=434;ExcessHet=3.0103;FS=0.585;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.94;ReadPosRankSum=0.113;SOR=0.587;set=HC	GT:AD:AF:DP	0/1:310,121:0.28:431
chr11	48367170	rs77876442	G	A	4124.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.547;ClippingRankSum=0.000;DB;DP=430;ExcessHet=3.0103;FS=1.242;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.68;ReadPosRankSum=0.346;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:307,119:0.28:426
chr11	48367190	rs78661795	A	T	4486.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.894;ClippingRankSum=0.000;DB;DP=404;ExcessHet=3.0103;FS=4.505;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.19;ReadPosRankSum=-0.506;SOR=0.839;set=HC	GT:AD:AF:DP	0/1:278,123:0.31:401
chr11	48367195	rs79063955	C	T	4388.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.957;ClippingRankSum=0.000;DB;DP=402;ExcessHet=3.0103;FS=7.823;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.00;ReadPosRankSum=-1.109;SOR=0.834;set=HC	GT:AD:AF:DP	0/1:270,129:0.32:399
chr11	48367249	rs74815769	C	T	5811.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.634;ClippingRankSum=0.000;DB;DP=401;ExcessHet=3.0103;FS=3.846;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.64;ReadPosRankSum=0.478;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:239,158:0.40:397
chr11	48367252	rs76287086	G	A	5768.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.611;ClippingRankSum=0.000;DB;DP=406;ExcessHet=3.0103;FS=1.787;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.35;ReadPosRankSum=1.188;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:244,158:0.39:402
chr11	48367311	rs73453180	T	C	3275.77	.	AC=1;AF=0.500;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	0/1:233,170:0.42:403
chr11	48367363	rs73453183	C	T	2066.77	.	AC=1;AF=0.500;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	0/1:225,112:0.33:337
chr11	48367387	rs78788561	C	T	1201.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:198,72:0.27:270
chr11	48367419	rs77576379	G	A	1672.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.480;ClippingRankSum=0.000;DB;DP=217;ExcessHet=3.0103;FS=3.466;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.82;ReadPosRankSum=-0.889;SOR=0.489;set=HC	GT:AD:AF:DP	0/1:153,61:0.29:214
chr11	48367424	rs77976451	C	G	1658.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.668;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=3.570;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.13;ReadPosRankSum=-1.786;SOR=0.470;set=HC	GT:AD:AF:DP	0/1:145,59:0.29:204
chr11	48367469	rs79686513	TG	CA	122.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.410;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.11;ReadPosRankSum=-3.027;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:99,12:0.11:111
chr11	48367474	rs75116918	A	G	112.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.699;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=1.428;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.14;ReadPosRankSum=-3.159;SOR=0.372;set=HC	GT:AD:AF:DP	0/1:90,9:0.09:99
chr11	48373632	rs4882248	T	A	156.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr11	48373675	.	TATA	T	56.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.639;ClippingRankSum=0.000;DP=37;ExcessHet=3.0103;FS=2.460;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.62;ReadPosRankSum=-0.126;SOR=0.130;set=HC	GT:AD:AF:DP	0/1:30,5:0.14:35
chr11	48373748	rs73453188	C	G	2283.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:92,63:0.41:155
chr11	48373770	rs73453191	T	A	2374.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:120,71:0.37:191
chr11	48373797	rs72896825	C	T	3406.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.385;ClippingRankSum=0.000;DB;DP=251;ExcessHet=3.0103;FS=1.614;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.68;ReadPosRankSum=-0.582;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:157,92:0.37:249
chr11	48373805	rs75618010	G	A	3626.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.799;ClippingRankSum=0.000;DB;DP=264;ExcessHet=3.0103;FS=0.473;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.79;ReadPosRankSum=-0.534;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:166,97:0.37:263
chr11	48373815	rs74350365	A	G	3910.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.843;ClippingRankSum=0.000;DB;DP=270;ExcessHet=3.0103;FS=0.463;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.54;ReadPosRankSum=-0.418;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:170,99:0.37:269
chr11	48373817	rs75951679	C	T	3868.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.725;ClippingRankSum=0.000;DB;DP=277;ExcessHet=3.0103;FS=0.962;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.02;ReadPosRankSum=-0.206;SOR=0.768;set=HC	GT:AD:AF:DP	0/1:175,101:0.37:276
chr11	48373820	rs3898634	A	C	4006.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.139;ClippingRankSum=0.000;DB;DP=286;ExcessHet=3.0103;FS=2.058;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.06;ReadPosRankSum=-0.641;SOR=0.831;set=HC	GT:AD:AF:DP	0/1:178,107:0.38:285
chr11	48373827	rs80081241	G	A	4132.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.822;ClippingRankSum=0.000;DB;DP=301;ExcessHet=3.0103;FS=3.263;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.78;ReadPosRankSum=-0.022;SOR=0.881;set=HC	GT:AD:AF:DP	0/1:190,110:0.37:300
chr11	48373833	rs75965588	GA	AG	4277.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.777;ClippingRankSum=0.000;DB;DP=311;ExcessHet=3.0103;FS=4.612;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.80;ReadPosRankSum=-0.068;SOR=0.940;set=HC	GT:AD:AF:DP	0/1:196,114:0.37:310
chr11	48373885	rs76292854	A	G	6046.77	.	AC=1;AF=0.500;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	0/1:244,167:0.41:411
chr11	48373900	rs77877396	A	G	5856.77	.	AC=1;AF=0.500;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	0/1:249,161:0.39:410
chr11	48373936	rs76304554	A	G	2344.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.123;ClippingRankSum=0.000;DB;DP=307;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.718;QD=7.74;ReadPosRankSum=-0.179;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:180,123:0.41:303
chr11	48373976	rs80225178	T	G	2866.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.869;ClippingRankSum=0.000;DB;DP=198;ExcessHet=3.0103;FS=1.165;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.604;QD=14.70;ReadPosRankSum=-2.697;SOR=0.604;set=HC	GT:AD:AF:DP	0/1:109,86:0.44:195
chr11	48373986	rs12420054	A	G	2488.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.214;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.666;QD=15.95;ReadPosRankSum=-3.296;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:90,66:0.42:156
chr11	48374000	rs112772888	C	CT	554.73	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:71,34:0.32:105
chr11	48374031	rs72896827	G	A	442.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.039;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=1.676;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.50;ReadPosRankSum=0.227;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:44,15:0.25:59
chr11	48374041	rs72896828	T	C	405.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.770;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=4.904;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.45;ReadPosRankSum=-0.059;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:35,13:0.27:48
chr11	48386956	.	C	CA	629.73	.	AC=1;AF=0.500;AN=2;DP=45;set=Intersection	GT:AD:AF:DP	0/1:25,20:0.44:45
chr11	48387098	rs77594589	A	C	3687.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.595;ClippingRankSum=0.000;DB;DP=258;ExcessHet=3.0103;FS=2.149;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.41;ReadPosRankSum=-0.500;SOR=0.564;set=HC	GT:AD:AF:DP	0/1:153,103:0.40:256
chr11	48387107	rs77606603	T	C	3788.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.239;ClippingRankSum=0.000;DB;DP=260;ExcessHet=3.0103;FS=0.986;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.69;ReadPosRankSum=-0.355;SOR=0.600;set=HC	GT:AD:AF:DP	0/1:159,99:0.38:258
chr11	48387115	rs75003399	G	A	3796.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.079;ClippingRankSum=0.000;DB;DP=262;ExcessHet=3.0103;FS=3.509;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.60;ReadPosRankSum=-1.338;SOR=0.506;set=HC	GT:AD:AF:DP	0/1:157,103:0.40:260
chr11	48387118	rs79339252	G	A	3837.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.597;ClippingRankSum=0.000;DB;DP=269;ExcessHet=3.0103;FS=3.432;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.37;ReadPosRankSum=-0.581;SOR=0.522;set=HC	GT:AD:AF:DP	0/1:162,105:0.39:267
chr11	48387154	rs72473370	AT	GC	3668.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.699;ClippingRankSum=0.000;DB;DP=276;ExcessHet=3.0103;FS=0.956;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.39;ReadPosRankSum=0.575;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:173,101:0.37:274
chr11	48387164	rs72473371	G	A	3604.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.450;ClippingRankSum=0.000;DB;DP=272;ExcessHet=3.0103;FS=2.118;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.40;ReadPosRankSum=1.481;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:172,97:0.36:269
chr11	48387186	rs1994140	A	G	3728.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:93,163:0.64:256
chr11	48387201	rs77053100	G	A	2735.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.512;ClippingRankSum=0.000;DB;DP=232;ExcessHet=3.0103;FS=11.523;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.95;ReadPosRankSum=1.554;SOR=1.036;set=HC	GT:AD:AF:DP	0/1:153,76:0.33:229
chr11	48387206	rs76817095	T	C	2695.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.981;ClippingRankSum=0.000;DB;DP=233;ExcessHet=3.0103;FS=14.426;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.72;ReadPosRankSum=1.551;SOR=1.166;set=HC	GT:AD:AF:DP	0/1:155,75:0.33:230
chr11	48387210	rs78428763	CC	TG	2681.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.831;ClippingRankSum=0.000;DB;DP=237;ExcessHet=3.0103;FS=12.991;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.46;ReadPosRankSum=1.254;SOR=1.217;set=HC	GT:AD:AF:DP	0/1:158,76:0.32:234
chr11	48387237	rs72898877	C	T	2110.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:144,64:0.31:208
chr11	48387254	rs75441735	A	G	2210.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.862;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=3.442;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.68;ReadPosRankSum=-1.134;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:144,63:0.30:207
chr11	48387258	rs78030134	C	T	2240.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.387;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=4.310;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.57;ReadPosRankSum=-1.057;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:149,63:0.30:212
chr11	48387262	rs75430864	G	A	2228.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.297;ClippingRankSum=0.000;DB;DP=219;ExcessHet=3.0103;FS=1.845;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.27;ReadPosRankSum=-1.021;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:154,63:0.29:217
chr11	48387278	rs139139147	C	CACTGTCCTTCTGT	2164.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.188;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=0.575;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.66;ReadPosRankSum=-1.492;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:146,57:0.28:203
chr11	48387285	.	A	AGTCTTTAGTAG	2276.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.017;ClippingRankSum=0.000;DP=202;ExcessHet=3.0103;FS=2.091;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.38;ReadPosRankSum=1.104;SOR=0.903;set=HC	GT:AD:AF:DP	0/1:153,47:0.23:200
chr11	48387301	rs76220342	G	A	1929.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.420;ClippingRankSum=0.000;DB;DP=240;ExcessHet=3.0103;FS=1.083;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.11;ReadPosRankSum=-1.238;SOR=0.781;set=HC	GT:AD:AF:DP	0/1:166,72:0.30:238
chr11	48387335	rs73460769	C	A	1621.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:177,91:0.34:268
chr11	48387370	rs73460772	A	G	2407.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:203,126:0.38:329
chr11	48387424	rs61917478	G	T	2689.77	.	AC=1;AF=0.500;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	0/1:242,139:0.36:381
chr11	48387490	rs77144540	G	A	4939.77	.	AC=1;AF=0.500;AN=2;DB;DP=505;set=Intersection	GT:AD:AF:DP	0/1:349,155:0.31:504
chr11	48387506	rs72898882	A	G	5231.77	.	AC=1;AF=0.500;AN=2;DB;DP=512;set=Intersection	GT:AD:AF:DP	0/1:353,158:0.31:511
chr11	48387526	rs78378263	G	T	5457.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.559;ClippingRankSum=0.000;DB;DP=498;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.98;ReadPosRankSum=-0.307;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:344,153:0.31:497
chr11	48387535	rs72898883	T	C	5368.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.361;ClippingRankSum=0.000;DB;DP=491;ExcessHet=3.0103;FS=0.567;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.96;ReadPosRankSum=-0.408;SOR=0.626;set=HC	GT:AD:AF:DP	0/1:342,148:0.30:490
chr11	48387540	rs72898885	G	T	5012.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.023;ClippingRankSum=0.000;DB;DP=490;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.25;ReadPosRankSum=-0.402;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:343,146:0.30:489
chr11	48387580	rs78299098	G	T	4547.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.047;ClippingRankSum=0.000;DB;DP=451;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.08;ReadPosRankSum=0.991;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:320,131:0.29:451
chr11	48387582	rs75027745	C	T	4601.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.000;ClippingRankSum=0.000;DB;DP=447;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.29;ReadPosRankSum=0.711;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:315,132:0.30:447
chr11	48387584	rs75821991	A	T	4711.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.307;ClippingRankSum=0.000;DB;DP=450;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.47;ReadPosRankSum=0.554;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:316,134:0.30:450
chr11	48387591	rs75297075	A	G	4815.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.079;ClippingRankSum=0.000;DB;DP=471;ExcessHet=3.0103;FS=0.574;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.22;ReadPosRankSum=1.045;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:334,137:0.29:471
chr11	48387604	rs72898886	C	T	4484.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.772;ClippingRankSum=0.000;DB;DP=478;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.38;ReadPosRankSum=1.125;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:342,136:0.28:478
chr11	48387630	rs73460777	C	T	3948.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.758;ClippingRankSum=0.000;DB;DP=441;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.99;ReadPosRankSum=0.281;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:316,123:0.28:439
chr11	48387647	rs75615667	A	G	3878.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.431;ClippingRankSum=0.000;DB;DP=414;ExcessHet=3.0103;FS=1.236;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.39;ReadPosRankSum=-0.905;SOR=0.594;set=HC	GT:AD:AF:DP	0/1:296,117:0.28:413
chr11	48387679	rs76209049	A	G	3591.77	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:259,106:0.29:365
chr11	48387683	rs67755516	GT	G	3545.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.934;ClippingRankSum=0.000;DB;DP=362;ExcessHet=3.0103;FS=0.422;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.85;ReadPosRankSum=-1.425;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:256,104:0.29:360
chr11	48387689	rs75371569	T	C	3556.77	.	AC=1;AF=0.500;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	0/1:249,104:0.29:353
chr11	48387705	rs34926479	C	T	2719.77	.	AC=1;AF=0.500;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	0/1:237,97:0.29:334
chr11	48387737	rs73460780	G	C	2382.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:215,117:0.35:332
chr11	48387757	rs74557904	A	C	3567.77	.	AC=1;AF=0.500;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	0/1:205,134:0.40:339
chr11	48387780	rs76329018	C	T	5665.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.193;ClippingRankSum=0.000;DB;DP=358;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.05;ReadPosRankSum=0.086;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:202,151:0.43:353
chr11	48387789	rs80222485	C	G	5727.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.495;ClippingRankSum=0.000;DB;DP=384;ExcessHet=3.0103;FS=2.190;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.15;ReadPosRankSum=0.964;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:215,163:0.43:378
chr11	48387825	rs75650204	T	G	5983.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.111;ClippingRankSum=0.000;DB;DP=384;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.83;ReadPosRankSum=1.887;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:216,162:0.43:378
chr11	48387833	rs79515387	T	C	5971.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.486;ClippingRankSum=0.000;DB;DP=390;ExcessHet=3.0103;FS=0.775;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.55;ReadPosRankSum=1.997;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:223,161:0.42:384
chr11	48387850	rs73460781	G	T	4704.77	.	AC=1;AF=0.500;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	0/1:224,155:0.41:379
chr11	48387890	rs74623688	T	C	4970.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.195;ClippingRankSum=0.000;DB;DP=371;ExcessHet=3.0103;FS=0.817;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.54;ReadPosRankSum=-3.068;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:230,137:0.37:367
chr11	48387894	rs75065468	C	T	4977.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.370;ClippingRankSum=0.000;DB;DP=368;ExcessHet=3.0103;FS=1.778;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.60;ReadPosRankSum=-3.494;SOR=0.800;set=HC	GT:AD:AF:DP	0/1:230,136:0.37:366
chr11	48387900	rs74338058	G	A	4989.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.824;ClippingRankSum=0.000;DB;DP=363;ExcessHet=3.0103;FS=0.828;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.82;ReadPosRankSum=-4.043;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:228,133:0.37:361
chr11	48387917	rs66829866	AT	A	3520.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:203,102:0.33:305
chr11	48387919	rs114441034	G	A	3541.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:204,97:0.32:301
chr11	48387930	rs75939575	T	C	2915.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:203,82:0.29:285
chr11	48387945	rs139770813	C	CCA	2246.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:168,67:0.29:235
chr11	48387946	rs114053360	G	T	2255.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.619;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=1.160;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.64;ReadPosRankSum=0.915;SOR=0.802;set=HC	GT:AD:AF:DP	0/1:169,65:0.28:234
chr11	48387960	rs79688019	T	C	1971.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:149,59:0.28:208
chr11	48387978	rs78160589	T	A	1850.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.371;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=2.181;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.23;ReadPosRankSum=1.216;SOR=0.909;set=HC	GT:AD:AF:DP	0/1:129,52:0.29:181
chr11	48387983	rs75819836	T	C	1716.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.342;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=3.226;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.92;ReadPosRankSum=1.026;SOR=1.028;set=HC	GT:AD:AF:DP	0/1:123,50:0.29:173
chr11	48388047	rs75982328	T	C	655.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.961;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.41;ReadPosRankSum=-0.733;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:45,18:0.29:63
chr11	48388047	.	TTA	CTG	528	.	AC=1;AF=0.500;AN=2;BRF=0.22;FR=0.5000;HP=1;HapScore=1;MGOF=45;MMLQ=28;MQ=60.0;NF=1;NR=13;PP=528;QD=41.533419633;SC=TTGGTCAGGATTATTTTCTGT;SbPval=0.94;Source=Platypus;TC=57;TCF=11;TCR=46;TR=14;WE=48388057;WS=48388037;set=Platypus	GT:AD:AF:DP	1/0:43,14:0.25:57
chr11	48388049	rs77697332	A	G	655.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.995;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.41;ReadPosRankSum=-1.518;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:44,19:0.30:63
chr11	48388067	rs73460782	G	A	458.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:33,15:0.31:48
chr11	48388094	.	C	CTT	981	.	AC=1;AF=0.500;AN=2;BRF=0.32;FR=0.5000;HP=1;HapScore=3;MGOF=62;MMLQ=24;MQ=58.76;NF=1;NR=6;PP=981;QD=146.285714286;SC=AAACCCAAGACTAAGTTGAGC;SbPval=0.23;Source=Platypus;TC=27;TCF=1;TCR=26;TR=7;WE=48388123;WS=48388084;set=Platypus	GT:AD:AF:DP	0/1:20,7:0.26:27
chr11	48388487	rs78414756	C	A	432.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:23,18:0.44:41
chr11	48388524	rs76789954	C	T	1112.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.896;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=11.889;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.27;ReadPosRankSum=-0.555;SOR=2.444;set=HC	GT:AD:AF:DP	0/1:47,31:0.40:78
chr11	48388524	.	CAA	TAG	1289	.	AC=1;AF=0.500;AN=2;BRF=0.21;FR=0.5000;HP=2;HapScore=1;MGOF=94;MMLQ=28;MQ=60.0;NF=25;NR=2;PP=1289;QD=49.7210324023;SC=ATTTCAGAATCAACTGAACTG;SbPval=0.9;Source=Platypus;TC=69;TCF=59;TCR=10;TR=27;WE=48388534;WS=48388514;set=Platypus	GT:AD:AF:DP	0/1:42,27:0.39:69
chr11	48388526	rs77473022	A	G	1229.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.648;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=11.735;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.57;ReadPosRankSum=-0.010;SOR=2.480;set=HC	GT:AD:AF:DP	0/1:49,30:0.38:79
chr11	48388542	rs77282201	G	A	1224.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.199;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=18.511;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.46;ReadPosRankSum=0.933;SOR=2.933;set=HC	GT:AD:AF:DP	0/1:58,33:0.36:91
chr11	48388544	rs74346885	T	C	1341.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.286;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=18.511;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.74;ReadPosRankSum=1.123;SOR=2.933;set=HC	GT:AD:AF:DP	0/1:58,33:0.36:91
chr11	48388553	rs80082776	C	G	1677.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.198;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=8.385;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.98;ReadPosRankSum=0.373;SOR=1.497;set=HC	GT:AD:AF:DP	0/1:74,46:0.38:120
chr11	48388563	rs77148147	CT	AG	2100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.788;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=6.054;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.01;ReadPosRankSum=0.250;SOR=1.275;set=HC	GT:AD:AF:DP	0/1:85,55:0.39:140
chr11	48388567	rs79767657	A	C	2255.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.399;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=5.705;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.56;ReadPosRankSum=0.032;SOR=1.202;set=HC	GT:AD:AF:DP	0/1:87,58:0.40:145
chr11	48388571	rs79079495	C	T	2351.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.668;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=5.347;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.98;ReadPosRankSum=0.522;SOR=1.182;set=HC	GT:AD:AF:DP	0/1:96,61:0.39:157
chr11	48388583	rs77992774	A	T	2373.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:112,69:0.38:181
chr11	48388610	rs79108820	T	G	3382.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.459;ClippingRankSum=0.000;DB;DP=231;ExcessHet=3.0103;FS=1.654;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.71;ReadPosRankSum=-0.060;SOR=0.831;set=HC	GT:AD:AF:DP	0/1:138,92:0.40:230
chr11	48388612	rs76366705	T	C	3502.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.925;ClippingRankSum=0.000;DB;DP=233;ExcessHet=3.0103;FS=2.303;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.10;ReadPosRankSum=0.537;SOR=0.862;set=HC	GT:AD:AF:DP	0/1:142,90:0.39:232
chr11	48388614	rs146852809	T	C	3454.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.526;ClippingRankSum=0.000;DB;DP=237;ExcessHet=3.0103;FS=1.616;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.64;ReadPosRankSum=0.379;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:144,92:0.39:236
chr11	48388621	rs75849499	ACA	GTC	3916.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.247;ClippingRankSum=0.000;DB;DP=267;ExcessHet=3.0103;FS=3.461;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.72;ReadPosRankSum=0.488;SOR=0.901;set=HC	GT:AD:AF:DP	0/1:164,102:0.38:266
chr11	48388641	rs80267937	G	A	5335.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:193,136:0.41:329
chr11	48388657	rs80000751	G	A	5808.77	.	AC=1;AF=0.500;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	0/1:209,152:0.42:361
chr11	48388681	rs76712816	G	A	6657.77	.	AC=1;AF=0.500;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	0/1:220,168:0.43:388
chr11	48388698	rs77483743	C	T	6471.77	.	AC=1;AF=0.500;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	0/1:205,168:0.45:373
chr11	48388717	rs78132200	T	C	5567.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:174,144:0.45:318
chr11	48388782	rs76039310	A	G	1452.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:85,71:0.46:156
chr11	48388833	rs73460789	A	C	301.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:28,14:0.33:42
chr11	48453787	rs4882063	G	A	4045.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:7,164:0.96:171
chr11	48510654	rs7103557	A	C	8441.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chr11	48510777	rs7103992	G	A	6019.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr11	48997592	rs1813231	C	T	2223.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr11	49000423	rs1965370	C	G	1584.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr11	49000522	rs1963629	C	T	6399.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr11	49002343	rs9783302	T	G	1282.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr11	49056627	rs60632912	C	CT,CTT	1787.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.544;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=5.155;MLEAC=1,1;MLEAF=0.500,0.500;MQ=58.77;MQRankSum=-1.449;QD=11.92;ReadPosRankSum=-0.317;SOR=0.300;set=HC	GT:AD:AF:DP	1/2:37,58,55:0.39,0.37:150
chr11	49059362	rs2696914	C	A	6366.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr11	49075605	rs2851535	G	A	3997.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr11	49076963	rs34650085	C	CAA	3905.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.452;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=1.682;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=0.366;QD=25.87;ReadPosRankSum=-0.388;SOR=0.362;set=HC	GT:AD:AF:DP	1/1:6,145:0.96:151
chr11	49077012	rs2773242	C	T	3643.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr11	49077889	rs36015501	AT	A	3572.73	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr11	49080616	rs60452246	T	C	4802.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:2,187:0.99:189
chr11	49080677	rs34947092	T	TA	651.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.423;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=2.451;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.58;ReadPosRankSum=-1.355;SOR=1.193;set=HC	GT:AD:AF:DP	0/1:28,48:0.63:76
chr11	49138552	rs11040259	C	A	4274.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr11	49170334	rs202694	T	C	2142.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr11	49176057	rs2988340	C	T	1316.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.01;QD=29.26;SOR=2.461;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr11	49192667	rs10839236	C	T	2187.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr11	49192905	rs34828796	GA	G	748.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.733;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=1.194;MLEAC=1;MLEAF=0.500;MQ=57.06;MQRankSum=0.981;QD=9.72;ReadPosRankSum=1.620;SOR=1.003;set=HC	GT:AD:AF:DP	0/1:19,58:0.75:77
chr11	49195090	rs202718	T	C	1610.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.31;QD=25.98;SOR=4.209;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr11	49195127	rs146564769	C	CA	459.75	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.599;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=2.195;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.43;ReadPosRankSum=0.761;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:7,30:0.81:37
chr11	49195129	rs67031328	G	A	1682.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.39;SOR=2.687;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr11	49196332	rs4929893	CG	TC	1294.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr11	49196652	rs202715	C	T	774.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr11	49208267	rs75940285	G	A	334.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.514;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=0.688;MLEAC=1;MLEAF=0.500;MQ=57.07;MQRankSum=-11.048;QD=1.74;ReadPosRankSum=1.300;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:156,36:0.19:192
chr11	49208319	rs79155991	G	A	275.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:144,32:0.18:176
chr11	49208333	rs74858499	G	A	66.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:125,19:0.13:144
chr11	49208433	.	A	G	170	.	AC=1;AF=0.500;AN=2;BRF=0.37;FR=0.5000;HP=2;HapScore=2;MGOF=15;MMLQ=28;MQ=46.38;NF=0;NR=10;PP=170;QD=20.4771212547;SC=GCACACAGGAAGGTCAGAAAT;SbPval=1.0;Source=Platypus;TC=29;TCF=2;TCR=27;TR=10;WE=49208441;WS=49208423;set=Platypus	GT:AD:AF:DP	0/1:19,10:0.34:29
chr11	49329552	rs1164670	G	A	8137.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chr11	49356400	rs34397343	GT	G	104.84	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.812;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.74;ReadPosRankSum=-2.200;SOR=2.093;set=HC	GT:AD:AF:DP	0/1:2,10:0.83:12
chr11	49372872	rs3915110	G	A	4839.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr11	49400965	rs3974576	T	C	3506.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr11	49401125	rs7102702	T	G	1074.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr11	49454956	.	CTT	C	86.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.474;ClippingRankSum=0.000;DP=22;ExcessHet=3.0103;FS=1.984;MLEAC=1;MLEAF=0.500;MQ=59.54;MQRankSum=-0.746;QD=4.56;ReadPosRankSum=0.496;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:11,8:0.42:19
chr11	49597799	rs7131345	C	T	6256.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr11	49598178	rs7101761	G	A	6423.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr11	49598207	rs3750925	T	C	11104.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.59;QD=45.14;SOR=0.726;set=HC	GT:AD:AF:DP	1/1:0,246:1.00:246
chr11	49598207	.	TCT	CCC	2947	.	AC=2;AF=1.00;AN=2;BRF=0.45;FR=1.0000;HP=1;HapScore=1;MGOF=16;MMLQ=24;MQ=55.66;NF=90;NR=91;PP=2947;QD=20;SC=TCCTCTTCCTTCTGCTCCAAG;SbPval=0.47;Source=Platypus;TC=189;TCF=92;TCR=97;TR=181;WE=49598217;WS=49598197;set=Platypus	GT:AD:AF:DP	1/1:8,181:0.96:189
chr11	49598209	rs7939515	T	C	11104.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.50;QD=44.60;SOR=0.717;set=HC	GT:AD:AF:DP	1/1:0,249:1.00:249
chr11	49637416	rs7125677	A	G	872.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr11	49655814	rs144145381	T	C	56.28	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.65;QD=18.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr11	49729299	rs67084465	AC	A	4874.73	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr11	49813442	rs7943083	A	G	359.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr11	49813497	rs149711026	CT	C	362.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.611;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=7.160;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=2.040;QD=12.95;ReadPosRankSum=0.299;SOR=0.982;set=HC	GT:AD:AF:DP	1/1:3,25:0.89:28
chr11	49813637	rs11530434	A	G	825.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr11	49829193	rs35198519	AT	A	5099.73	.	AC=2;AF=1.00;AN=2;DB;DP=254;MQ=60.01;set=Intersection	GT:AD:AF:DP	1/1:5,240:0.98:245
chr11	49974371	rs28662375	G	A	8270.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr11	50003191	rs4598671	C	A	4772.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr11	51516000	rs11246607	C	T	6490.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:2,229:0.99:231
chr11	51516036	rs11246608	G	A	4236.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr11	51516144	rs11246609	A	G	2210.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.98;QD=29.48;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr11	51527637	rs111467734	G	A	2826.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr11	55541098	rs297118	G	A	6365.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr11	55563776	rs297054	T	G	9397.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:2,334:0.99:336
chr11	55563900	rs297055	T	C	6928.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:2,263:0.99:265
chr11	55587117	rs297082	T	A	2350.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr11	55587511	rs297081	A	G	7960.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr11	55595081	rs7102394	C	T	8015.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr11	55595324	rs7102663	C	T	6698.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:2,241:0.99:243
chr11	55606302	rs6591699	G	T	5070.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr11	55606693	rs6591700	G	A	7801.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr11	55656437	.	A	AT	90.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.225;ClippingRankSum=0.000;DP=176;ExcessHet=3.0103;FS=1.816;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-1.942;QD=0.62;ReadPosRankSum=-2.450;SOR=0.455;set=HC	GT:AD:AF:DP	0/1:120,26:0.18:146
chr11	55656483	rs7483200	T	A	2878.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr11	55681336	rs11231529	G	A	4740.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr11	55681494	rs2457239	G	A	4865.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr11	55682111	rs2940752	T	G	551.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr11	55703981	rs35841857	T	TA	406.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.93;SOR=5.784;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	55734972	rs11231705	A	T	362.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr11	55746891	rs7481466	G	A	3004.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr11	55761221	rs2449134	C	T	2095.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr11	55761738	rs2128152	T	G	1926.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr11	55762167	rs34270187	CA	C	125.37	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.117;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=14.150;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.64;ReadPosRankSum=-0.298;SOR=3.413;set=HC	GT:AD:AF:DP	0/1:2,11:0.85:13
chr11	55798152	rs1482011	G	A	8724.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr11	55860780	rs1842700	G	A	6648.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr11	55872876	rs2512961	C	T	9945.77	.	AC=2;AF=1.00;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	1/1:2,357:0.99:359
chr11	55873024	rs2449148	A	G	18738.77	.	AC=2;AF=1.00;AN=2;DB;DP=684;set=Intersection	GT:AD:AF:DP	1/1:0,679:1.00:679
chr11	55873368	rs1842696	G	A	5292.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr11	55889790	rs2035408	G	T	2787.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr11	55890257	rs1842691	C	T	9981.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:0,344:1.00:344
chr11	55944467	rs149623931	C	T	5088.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:4,186:0.98:190
chr11	56127746	rs7942390	A	G	4040.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr11	56128081	rs10896290	A	G	4132.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr11	56128524	rs7928704	C	T	7923.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr11	56143156	rs11228165	C	T	1608.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.117;ClippingRankSum=0.000;DB;DP=309;ExcessHet=3.0103;FS=8.576;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.27;ReadPosRankSum=-0.925;SOR=1.237;set=HC	GT:AD:AF:DP	0/1:249,56:0.18:305
chr11	56143158	rs11228166	A	G	1608.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.441;ClippingRankSum=0.000;DB;DP=313;ExcessHet=3.0103;FS=8.421;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.21;ReadPosRankSum=-0.833;SOR=1.232;set=HC	GT:AD:AF:DP	0/1:251,58:0.19:309
chr11	56143198	rs80034856	C	T	3559.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.457;ClippingRankSum=0.000;DB;DP=342;ExcessHet=3.0103;FS=4.763;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.53;ReadPosRankSum=0.281;SOR=0.980;set=HC	GT:AD:AF:DP	0/1:242,96:0.28:338
chr11	56143204	rs79445223	C	T	3819.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.022;ClippingRankSum=0.000;DB;DP=364;ExcessHet=3.0103;FS=9.610;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.61;ReadPosRankSum=0.201;SOR=1.082;set=HC	GT:AD:AF:DP	0/1:251,109:0.30:360
chr11	56143207	rs75547926	C	T	4041.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.214;ClippingRankSum=0.000;DB;DP=367;ExcessHet=3.0103;FS=6.735;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.13;ReadPosRankSum=0.156;SOR=1.035;set=HC	GT:AD:AF:DP	0/1:250,113:0.31:363
chr11	56143216	rs76044076	G	A	4836.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.037;ClippingRankSum=0.000;DB;DP=393;ExcessHet=3.0103;FS=4.770;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.43;ReadPosRankSum=-0.121;SOR=0.923;set=HC	GT:AD:AF:DP	0/1:259,130:0.33:389
chr11	56143225	rs77854836	CT	TC	5088.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.099;ClippingRankSum=0.000;DB;DP=411;ExcessHet=3.0103;FS=3.426;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.50;ReadPosRankSum=0.269;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:266,141:0.35:407
chr11	56143250	rs76390346	G	A	5601.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.900;ClippingRankSum=0.000;DB;DP=427;ExcessHet=3.0103;FS=3.370;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.21;ReadPosRankSum=1.880;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:270,154:0.36:424
chr11	56143252	rs75101573	G	A	5631.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.647;ClippingRankSum=0.000;DB;DP=434;ExcessHet=3.0103;FS=3.392;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.07;ReadPosRankSum=2.366;SOR=0.580;set=HC	GT:AD:AF:DP	0/1:277,154:0.36:431
chr11	56143255	.	T	TGA	5658.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.566;ClippingRankSum=0.000;DP=437;ExcessHet=3.0103;FS=2.569;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.04;ReadPosRankSum=2.420;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:279,155:0.36:434
chr11	56143257	rs77515824	C	A	5707.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.516;ClippingRankSum=0.000;DB;DP=437;ExcessHet=3.0103;FS=3.369;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.15;ReadPosRankSum=2.615;SOR=0.554;set=HC	GT:AD:AF:DP	0/1:279,155:0.36:434
chr11	56143259	.	AGT	A	5653.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.982;ClippingRankSum=0.000;DP=443;ExcessHet=3.0103;FS=2.584;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.85;ReadPosRankSum=2.855;SOR=0.579;set=HC	GT:AD:AF:DP	0/1:285,155:0.35:440
chr11	56143357	rs76949582	G	A	2829.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.652;ClippingRankSum=0.000;DB;DP=306;ExcessHet=3.0103;FS=9.085;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.31;ReadPosRankSum=-0.620;SOR=0.830;set=HC	GT:AD:AF:DP	0/1:220,84:0.28:304
chr11	56143360	rs79469149	C	T	2877.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.324;ClippingRankSum=0.000;DB;DP=300;ExcessHet=3.0103;FS=10.267;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.62;ReadPosRankSum=-0.640;SOR=0.830;set=HC	GT:AD:AF:DP	0/1:217,82:0.27:299
chr11	56143370	rs77605888	GT	AG	2773.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.760;ClippingRankSum=0.000;DB;DP=282;ExcessHet=3.0103;FS=8.677;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.87;ReadPosRankSum=-0.329;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:207,74:0.26:281
chr11	56143375	rs75240955	A	T	2548.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=10.285;ClippingRankSum=0.000;DB;DP=272;ExcessHet=3.0103;FS=3.862;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.41;ReadPosRankSum=-0.257;SOR=0.489;set=HC	GT:AD:AF:DP	0/1:199,72:0.27:271
chr11	56143378	rs80298942	C	G	2563.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.134;ClippingRankSum=0.000;DB;DP=272;ExcessHet=3.0103;FS=4.646;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.46;ReadPosRankSum=-0.864;SOR=0.467;set=HC	GT:AD:AF:DP	0/1:196,75:0.28:271
chr11	56143381	rs78405432	TG	CA	2726.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.861;ClippingRankSum=0.000;DB;DP=284;ExcessHet=3.0103;FS=2.269;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.64;ReadPosRankSum=-0.621;SOR=0.544;set=HC	GT:AD:AF:DP	0/1:205,78:0.28:283
chr11	56143394	rs74667177	A	G	2931.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=12.136;ClippingRankSum=0.000;DB;DP=316;ExcessHet=3.0103;FS=0.976;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.31;ReadPosRankSum=-0.150;SOR=0.759;set=HC	GT:AD:AF:DP	0/1:228,87:0.28:315
chr11	56143399	rs75482598	AC	GT	3012.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.737;ClippingRankSum=0.000;DB;DP=317;ExcessHet=3.0103;FS=2.833;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.53;ReadPosRankSum=-0.203;SOR=0.871;set=HC	GT:AD:AF:DP	0/1:229,87:0.28:316
chr11	56143402	rs77968220	G	A	3016.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.586;ClippingRankSum=0.000;DB;DP=321;ExcessHet=3.0103;FS=3.532;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.43;ReadPosRankSum=-0.513;SOR=0.916;set=HC	GT:AD:AF:DP	0/1:231,89:0.28:320
chr11	56143408	rs79327545	C	T	2995.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.617;ClippingRankSum=0.000;DB;DP=327;ExcessHet=3.0103;FS=6.165;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.19;ReadPosRankSum=0.197;SOR=1.071;set=HC	GT:AD:AF:DP	0/1:240,86:0.26:326
chr11	56143411	rs77484944	T	C	3121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.656;ClippingRankSum=0.000;DB;DP=337;ExcessHet=3.0103;FS=8.871;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.29;ReadPosRankSum=-0.377;SOR=1.157;set=HC	GT:AD:AF:DP	0/1:245,91:0.27:336
chr11	56143414	rs74329097	CA	GG	3306.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.160;ClippingRankSum=0.000;DB;DP=350;ExcessHet=3.0103;FS=13.042;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.47;ReadPosRankSum=-0.569;SOR=1.296;set=HC	GT:AD:AF:DP	0/1:254,95:0.27:349
chr11	56143424	.	A	ACGGC	3573.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=8.034;ClippingRankSum=0.000;DP=372;ExcessHet=3.0103;FS=16.389;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.66;ReadPosRankSum=-1.026;SOR=1.406;set=HC	GT:AD:AF:DP	0/1:270,100:0.27:370
chr11	56143425	.	TATCA	T	3552.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=11.388;ClippingRankSum=0.000;DP=388;ExcessHet=3.0103;FS=20.212;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.20;ReadPosRankSum=-1.151;SOR=1.504;set=HC	GT:AD:AF:DP	0/1:283,103:0.27:386
chr11	56143432	rs78396581	A	G	3483.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=10.419;ClippingRankSum=0.000;DB;DP=389;ExcessHet=3.0103;FS=20.050;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.00;ReadPosRankSum=-1.469;SOR=1.498;set=HC	GT:AD:AF:DP	0/1:283,104:0.27:387
chr11	56143434	rs10791961	C	G	14255.77	.	AC=2;AF=1.00;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	1/1:0,391:1.00:391
chr11	56143489	rs74711788	AT	GA	5930.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.402;ClippingRankSum=0.000;DB;DP=574;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.42;ReadPosRankSum=1.779;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:400,169:0.30:569
chr11	56143501	rs12272237	T	G	6343.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.733;ClippingRankSum=0.000;DB;DP=601;ExcessHet=3.0103;FS=0.565;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.66;ReadPosRankSum=1.130;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:415,180:0.30:595
chr11	56143508	rs10791962	A	T	6739.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.061;ClippingRankSum=0.000;DB;DP=624;ExcessHet=3.0103;FS=0.566;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.91;ReadPosRankSum=0.927;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:431,187:0.30:618
chr11	56143510	rs10791963	T	C	6861.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.637;ClippingRankSum=0.000;DB;DP=634;ExcessHet=3.0103;FS=0.566;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.93;ReadPosRankSum=0.486;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:437,191:0.30:628
chr11	56143528	rs10791964	A	G	7464.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.395;ClippingRankSum=0.000;DB;DP=680;ExcessHet=3.0103;FS=4.468;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.06;ReadPosRankSum=-0.010;SOR=1.054;set=HC	GT:AD:AF:DP	0/1:464,211:0.31:675
chr11	56143534	rs78854227	A	G	7620.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.651;ClippingRankSum=0.000;DB;DP=670;ExcessHet=3.0103;FS=4.477;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.44;ReadPosRankSum=0.221;SOR=1.005;set=HC	GT:AD:AF:DP	0/1:461,205:0.31:666
chr11	56143537	rs74691432	A	T	7389.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.392;ClippingRankSum=0.000;DB;DP=672;ExcessHet=3.0103;FS=4.523;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.05;ReadPosRankSum=0.653;SOR=1.091;set=HC	GT:AD:AF:DP	0/1:466,203:0.30:669
chr11	56143539	rs75226392	T	C	7320.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=10.358;ClippingRankSum=0.000;DB;DP=676;ExcessHet=3.0103;FS=6.670;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.88;ReadPosRankSum=0.598;SOR=1.135;set=HC	GT:AD:AF:DP	0/1:468,205:0.30:673
chr11	56143543	rs76579014	TT	CC	7620.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.978;ClippingRankSum=0.000;DB;DP=682;ExcessHet=3.0103;FS=7.762;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.21;ReadPosRankSum=-0.012;SOR=1.181;set=HC	GT:AD:AF:DP	0/1:469,211:0.31:680
chr11	56143556	rs80334520	T	A	8181.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.131;ClippingRankSum=0.000;DB;DP=711;ExcessHet=3.0103;FS=14.742;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.54;ReadPosRankSum=-1.013;SOR=1.495;set=HC	GT:AD:AF:DP	0/1:481,228:0.32:709
chr11	56143559	rs74603674	C	T	8418.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.967;ClippingRankSum=0.000;DB;DP=717;ExcessHet=3.0103;FS=16.592;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.77;ReadPosRankSum=-0.752;SOR=1.528;set=HC	GT:AD:AF:DP	0/1:486,229:0.32:715
chr11	56143561	rs75242425	AA	GG	8318.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=10.981;ClippingRankSum=0.000;DB;DP=725;ExcessHet=3.0103;FS=16.371;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.51;ReadPosRankSum=-1.003;SOR=1.478;set=HC	GT:AD:AF:DP	0/1:489,234:0.32:723
chr11	56143564	rs77640279	G	T	9264.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.656;ClippingRankSum=0.000;DB;DP=729;ExcessHet=3.0103;FS=14.908;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.74;ReadPosRankSum=-0.029;SOR=1.454;set=HC	GT:AD:AF:DP	0/1:498,229:0.31:727
chr11	56143570	rs11228169	A	G	9306.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.989;ClippingRankSum=0.000;DB;DP=795;ExcessHet=3.0103;FS=4.243;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.74;ReadPosRankSum=-4.088;SOR=0.858;set=HC	GT:AD:AF:DP	0/1:504,289:0.36:793
chr11	56143690	rs4990123	C	A	7769.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.870;ClippingRankSum=0.000;DB;DP=511;ExcessHet=3.0103;FS=8.357;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=-1.153;QD=15.39;ReadPosRankSum=-0.049;SOR=1.256;set=HC	GT:AD:AF:DP	0/1:289,216:0.43:505
chr11	56143696	rs4990122	C	T	7410.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.648;ClippingRankSum=0.000;DB;DP=477;ExcessHet=3.0103;FS=12.343;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=-1.177;QD=15.70;ReadPosRankSum=-0.063;SOR=1.407;set=HC	GT:AD:AF:DP	0/1:275,197:0.42:472
chr11	56143699	rs4990121	T	G	7305.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.014;ClippingRankSum=0.000;DB;DP=462;ExcessHet=3.0103;FS=15.632;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=-1.216;QD=15.95;ReadPosRankSum=0.741;SOR=1.513;set=HC	GT:AD:AF:DP	0/1:274,184:0.40:458
chr11	56143716	rs10896309	TG	CA	5766.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.546;ClippingRankSum=0.000;DB;DP=411;ExcessHet=3.0103;FS=14.823;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-1.330;QD=14.10;ReadPosRankSum=1.352;SOR=1.579;set=HC	GT:AD:AF:DP	0/1:262,147:0.36:409
chr11	56143723	rs12272349	T	C	4953.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.814;ClippingRankSum=0.000;DB;DP=396;ExcessHet=3.0103;FS=23.479;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-1.395;QD=12.57;ReadPosRankSum=1.906;SOR=1.514;set=HC	GT:AD:AF:DP	0/1:261,133:0.34:394
chr11	56143725	rs77042014	C	G	4788.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.664;ClippingRankSum=0.000;DB;DP=391;ExcessHet=3.0103;FS=24.039;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-1.422;QD=12.31;ReadPosRankSum=2.188;SOR=1.547;set=HC	GT:AD:AF:DP	0/1:261,128:0.33:389
chr11	56143729	rs55888197	CC	TG	4611.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.104;ClippingRankSum=0.000;DB;DP=383;ExcessHet=3.0103;FS=27.645;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-1.417;QD=12.10;ReadPosRankSum=1.289;SOR=1.651;set=HC	GT:AD:AF:DP	0/1:255,126:0.33:381
chr11	56143762	rs79307272	C	T	2758.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.958;ClippingRankSum=0.000;DB;DP=295;ExcessHet=3.0103;FS=32.674;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.42;ReadPosRankSum=-2.509;SOR=2.064;set=HC	GT:AD:AF:DP	0/1:207,86:0.29:293
chr11	56143767	rs79705206	C	T	2649.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.557;ClippingRankSum=0.000;DB;DP=278;ExcessHet=3.0103;FS=29.336;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.60;ReadPosRankSum=-1.641;SOR=2.061;set=HC	GT:AD:AF:DP	0/1:203,73:0.26:276
chr11	56143782	.	T	TGA	2013.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.176;ClippingRankSum=0.000;DP=263;ExcessHet=3.0103;FS=16.255;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-1.821;QD=7.72;ReadPosRankSum=-2.076;SOR=1.662;set=HC	GT:AD:AF:DP	0/1:201,60:0.23:261
chr11	56143784	.	CAT	C	1846.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.267;ClippingRankSum=0.000;DP=265;ExcessHet=3.0103;FS=19.092;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-1.981;QD=7.02;ReadPosRankSum=-0.989;SOR=1.799;set=HC	GT:AD:AF:DP	0/1:210,53:0.20:263
chr11	56143795	.	G	A	1414.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.188;ClippingRankSum=0.000;DP=244;ExcessHet=3.0103;FS=30.584;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=-2.032;QD=5.82;ReadPosRankSum=-1.761;SOR=2.448;set=HC	GT:AD:AF:DP	0/1:196,47:0.19:243
chr11	56143803	rs202193035	AG	GC	1043.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.802;ClippingRankSum=0.000;DB;DP=233;ExcessHet=3.0103;FS=17.988;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=-2.321;QD=4.50;ReadPosRankSum=-0.285;SOR=2.034;set=HC	GT:AD:AF:DP	0/1:196,36:0.16:232
chr11	56143807	rs201727202	G	A	938.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.845;ClippingRankSum=0.000;DB;DP=230;ExcessHet=3.0103;FS=24.955;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=-2.303;QD=4.10;ReadPosRankSum=-0.850;SOR=2.390;set=HC	GT:AD:AF:DP	0/1:193,36:0.16:229
chr11	56143810	rs201982103	T	C	887.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.544;ClippingRankSum=0.000;DB;DP=227;ExcessHet=3.0103;FS=26.239;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=-2.324;QD=3.93;ReadPosRankSum=-0.938;SOR=2.593;set=HC	GT:AD:AF:DP	0/1:191,35:0.15:226
chr11	56143816	rs111512467	G	C	818.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.147;ClippingRankSum=0.000;DB;DP=219;ExcessHet=3.0103;FS=24.378;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=-2.355;QD=3.76;ReadPosRankSum=-1.329;SOR=2.494;set=HC	GT:AD:AF:DP	0/1:185,33:0.15:218
chr11	56143819	rs113312059	G	C	806.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.444;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=22.159;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=-2.339;QD=3.86;ReadPosRankSum=-1.868;SOR=2.372;set=HC	GT:AD:AF:DP	0/1:177,32:0.15:209
chr11	56143823	rs77614949	G	A	756.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.774;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=18.257;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=-2.450;QD=3.69;ReadPosRankSum=-1.512;SOR=2.179;set=HC	GT:AD:AF:DP	0/1:176,29:0.14:205
chr11	56143858	rs78068762	G	C	444.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.053;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=4.199;MLEAC=1;MLEAF=0.500;MQ=59.83;MQRankSum=-5.388;QD=2.27;ReadPosRankSum=-1.084;SOR=1.211;set=HC	GT:AD:AF:DP	0/1:172,24:0.12:196
chr11	56143864	rs111260371	C	G	428.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.896;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=2.983;MLEAC=1;MLEAF=0.500;MQ=59.71;MQRankSum=-5.392;QD=2.28;ReadPosRankSum=-0.847;SOR=1.067;set=HC	GT:AD:AF:DP	0/1:165,23:0.12:188
chr11	56143867	rs111341120	T	C	437.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.365;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=1.887;MLEAC=1;MLEAF=0.500;MQ=59.71;MQRankSum=-5.447;QD=2.39;ReadPosRankSum=-0.766;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:161,22:0.12:183
chr11	56143882	rs113061820	G	A	302.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.240;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=1.995;MLEAC=1;MLEAF=0.500;MQ=59.68;MQRankSum=-5.698;QD=1.77;ReadPosRankSum=0.094;SOR=0.942;set=HC	GT:AD:AF:DP	0/1:152,19:0.11:171
chr11	56143885	rs111871244	T	A	341.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.351;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.68;MQRankSum=-5.835;QD=2.02;ReadPosRankSum=0.459;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:151,18:0.11:169
chr11	56143891	rs112265664	T	A	302.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.589;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=1.984;MLEAC=1;MLEAF=0.500;MQ=59.69;MQRankSum=-5.716;QD=1.76;ReadPosRankSum=0.079;SOR=0.928;set=HC	GT:AD:AF:DP	0/1:153,19:0.11:172
chr11	56143898	rs373392784	G	T	266.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.484;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=2.130;MLEAC=1;MLEAF=0.500;MQ=59.70;MQRankSum=-5.147;QD=1.61;ReadPosRankSum=1.137;SOR=0.985;set=HC	GT:AD:AF:DP	0/1:149,17:0.10:166
chr11	56143900	rs202086525	C	T	236.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.959;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=2.140;MLEAC=1;MLEAF=0.500;MQ=59.70;MQRankSum=-5.130;QD=1.43;ReadPosRankSum=0.927;SOR=1.000;set=HC	GT:AD:AF:DP	0/1:148,17:0.10:165
chr11	56143903	.	G	T	242.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.309;ClippingRankSum=0.000;DP=164;ExcessHet=3.0103;FS=2.126;MLEAC=1;MLEAF=0.500;MQ=59.69;MQRankSum=-5.078;QD=1.50;ReadPosRankSum=0.627;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:145,17:0.10:162
chr11	56143906	rs201664860	C	T	251.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.257;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=0.990;MLEAC=1;MLEAF=0.500;MQ=59.69;MQRankSum=-5.181;QD=1.59;ReadPosRankSum=0.798;SOR=0.815;set=HC	GT:AD:AF:DP	0/1:142,16:0.10:158
chr11	56143907	rs374830614	A	G	257.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.073;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=2.264;MLEAC=1;MLEAF=0.500;MQ=59.68;MQRankSum=-5.313;QD=1.66;ReadPosRankSum=1.089;SOR=0.993;set=HC	GT:AD:AF:DP	0/1:140,15:0.10:155
chr11	56143936	rs72925527	A	G	57.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.217;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=4.837;MLEAC=1;MLEAF=0.500;MQ=59.59;MQRankSum=-5.775;QD=0.48;ReadPosRankSum=0.594;SOR=1.445;set=HC	GT:AD:AF:DP	0/1:110,10:0.08:120
chr11	56143942	rs72925528	C	T	72.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.823;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=3.096;MLEAC=1;MLEAF=0.500;MQ=59.57;MQRankSum=-5.670;QD=0.63;ReadPosRankSum=-0.831;SOR=1.355;set=HC	GT:AD:AF:DP	0/1:106,10:0.09:116
chr11	56143966	rs12291978	C	T	2667.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:1,95:0.99:96
chr11	56143977	rs12272403	A	G	2239.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:1,81:0.99:82
chr11	56185159	rs7930678	A	G	7447.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr11	56185327	rs7933772	T	C	6848.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr11	56185345	rs6591324	A	G	6523.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr11	56185689	rs7931261	A	G	5722.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:3,218:0.99:221
chr11	56380008	rs12292069	C	T	5568.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:2,205:0.99:207
chr11	56380774	rs200578897	C	T	7836.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:5,296:0.98:301
chr11	56409603	rs11606499	C	T	5004.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr11	56467757	.	CACG	C	427.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.807;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=3.388;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.82;ReadPosRankSum=-0.227;SOR=0.144;set=HC	GT:AD:AF:DP	0/1:13,11:0.46:24
chr11	56467763	.	A	AGAT	430.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.409;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=3.203;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.95;ReadPosRankSum=-2.757;SOR=0.077;set=HC	GT:AD:AF:DP	0/1:12,12:0.50:24
chr11	56467764	rs78916686	C	T	439.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.399;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=3.203;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.32;ReadPosRankSum=-0.725;SOR=0.077;set=HC	GT:AD:AF:DP	0/1:12,12:0.50:24
chr11	56467787	rs74218731	A	G	402.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:20,17:0.46:37
chr11	56467810	rs76085479	A	T	840.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.057;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=1.249;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.57;ReadPosRankSum=1.876;SOR=0.444;set=HC	GT:AD:AF:DP	0/1:32,22:0.41:54
chr11	56467813	rs77180330	A	G	903.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.187;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=1.145;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.58;ReadPosRankSum=2.012;SOR=0.482;set=HC	GT:AD:AF:DP	0/1:35,23:0.40:58
chr11	56467816	rs78119960	G	T	890.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.543;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.37;ReadPosRankSum=2.112;SOR=0.547;set=HC	GT:AD:AF:DP	0/1:38,24:0.39:62
chr11	56467819	rs78036340	A	G	923.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.051;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.21;ReadPosRankSum=1.534;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:39,26:0.40:65
chr11	56467833	rs73474897	T	C	720.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:48,33:0.41:81
chr11	56467881	rs73474900	T	C	1514.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:100,72:0.42:172
chr11	56467926	rs1704284	A	G	2169.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:153,110:0.42:263
chr11	56468020	rs532637	T	C	8965.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.16;QD=33.21;SOR=0.785;set=HC	GT:AD:AF:DP	1/1:0,270:1.00:270
chr11	56468020	.	TG	CA,CG	2139	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.39;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=34;MMLQ=28;MQ=56.96;NF=34,97;NR=37,107;PP=923,2139;QD=13.75306866;SC=TAATGACTCCTGCCTCCACAC;SbPval=0.52;Source=Platypus;TC=206;TCF=97;TCR=109;TR=71,204;WE=56468029;WS=56468010;set=Platypus	GT:AF:DP	0/1:0.34:206
chr11	56468021	rs532635	G	A	1678.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.485;ClippingRankSum=0.000;DB;DP=270;ExcessHet=3.0103;FS=0.976;MLEAC=1;MLEAF=0.500;MQ=58.10;MQRankSum=-8.225;QD=6.22;ReadPosRankSum=-1.042;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:177,93:0.34:270
chr11	56468044	rs3975155	T	G	2522.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.368;ClippingRankSum=0.000;DB;DP=228;ExcessHet=3.0103;FS=0.519;MLEAC=1;MLEAF=0.500;MQ=57.68;MQRankSum=-9.183;QD=11.06;ReadPosRankSum=-1.046;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:156,72:0.32:228
chr11	56468047	rs2865519	A	G	2529.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.170;ClippingRankSum=0.000;DB;DP=226;ExcessHet=3.0103;FS=2.431;MLEAC=1;MLEAF=0.500;MQ=57.66;MQRankSum=-9.025;QD=11.19;ReadPosRankSum=-1.275;SOR=0.592;set=HC	GT:AD:AF:DP	0/1:153,73:0.32:226
chr11	56468048	rs2865520	C	T	7371.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr11	56468111	rs602224	C	T	1309.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:110,63:0.36:173
chr11	56468155	rs11228732	T	G	2938.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:106,126:0.54:232
chr11	56468198	rs4990194	A	G	5161.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.212;ClippingRankSum=0.000;DB;DP=297;ExcessHet=3.0103;FS=0.895;MLEAC=1;MLEAF=0.500;MQ=59.79;MQRankSum=-1.882;QD=17.56;ReadPosRankSum=0.136;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:159,135:0.46:294
chr11	56468200	rs4990195	C	T	5393.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.078;ClippingRankSum=0.000;DB;DP=296;ExcessHet=3.0103;FS=0.899;MLEAC=1;MLEAF=0.500;MQ=59.79;MQRankSum=-1.876;QD=18.41;ReadPosRankSum=0.003;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:158,135:0.46:293
chr11	56468202	rs4990196	G	A	5460.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.922;ClippingRankSum=0.000;DB;DP=304;ExcessHet=3.0103;FS=0.880;MLEAC=1;MLEAF=0.500;MQ=59.79;MQRankSum=-1.860;QD=18.14;ReadPosRankSum=-0.260;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:161,140:0.47:301
chr11	56468212	rs591369	G	A	5474.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.912;ClippingRankSum=0.000;DB;DP=323;ExcessHet=3.0103;FS=2.417;MLEAC=1;MLEAF=0.500;MQ=59.81;MQRankSum=-1.893;QD=17.11;ReadPosRankSum=0.084;SOR=0.564;set=HC	GT:AD:AF:DP	0/1:174,146:0.46:320
chr11	56468259	rs503776	C	T	4608.77	.	AC=1;AF=0.500;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	0/1:177,211:0.54:388
chr11	56468368	rs11228733	C	T	3343.77	.	AC=1;AF=0.500;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	0/1:252,167:0.40:419
chr11	56468403	rs11228734	G	A	5632.77	.	AC=1;AF=0.500;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	0/1:236,161:0.41:397
chr11	56468416	rs11228735	G	A	5538.77	.	AC=1;AF=0.500;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	0/1:234,149:0.39:383
chr11	56468448	rs80194264	AA	GT	5346.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.234;ClippingRankSum=0.000;DB;DP=363;ExcessHet=3.0103;FS=6.295;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.85;ReadPosRankSum=-0.506;SOR=1.005;set=HC	GT:AD:AF:DP	0/1:217,143:0.40:360
chr11	56468452	rs79970235	A	C	5226.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.382;ClippingRankSum=0.000;DB;DP=365;ExcessHet=3.0103;FS=7.075;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.40;ReadPosRankSum=0.281;SOR=1.014;set=HC	GT:AD:AF:DP	0/1:222,141:0.39:363
chr11	56468493	rs10792053	A	G	3602.77	.	AC=1;AF=0.500;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	0/1:223,185:0.45:408
chr11	56468554	rs12420076	A	C	8751.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.772;ClippingRankSum=0.000;DB;DP=484;ExcessHet=3.0103;FS=1.103;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.50;ReadPosRankSum=0.813;SOR=0.806;set=HC	GT:AD:AF:DP	0/1:245,228:0.48:473
chr11	56468560	rs10896516	TA	CG	9145.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.186;ClippingRankSum=0.000;DB;DP=500;ExcessHet=3.0103;FS=0.523;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.74;ReadPosRankSum=0.828;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:254,234:0.48:488
chr11	56468637	rs76884192	C	T	9537.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.588;ClippingRankSum=0.000;DB;DP=678;ExcessHet=3.0103;FS=0.529;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.15;ReadPosRankSum=-0.968;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:410,264:0.39:674
chr11	56468638	rs7121276	G	T	9171.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.471;ClippingRankSum=0.000;DB;DP=681;ExcessHet=3.0103;FS=0.532;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.55;ReadPosRankSum=1.123;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:270,407:0.60:677
chr11	56468646	rs78493274	C	T	9436.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.000;ClippingRankSum=0.000;DB;DP=674;ExcessHet=3.0103;FS=0.532;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.08;ReadPosRankSum=-1.234;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:410,260:0.39:670
chr11	56468694	rs79060400	C	T	8181.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.014;ClippingRankSum=0.000;DB;DP=617;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.30;ReadPosRankSum=0.044;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:389,226:0.37:615
chr11	56468699	rs79251113	T	A	8232.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.926;ClippingRankSum=0.000;DB;DP=616;ExcessHet=3.0103;FS=0.537;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.41;ReadPosRankSum=0.587;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:391,223:0.36:614
chr11	56468704	rs79288825	T	C	8202.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.513;ClippingRankSum=0.000;DB;DP=609;ExcessHet=3.0103;FS=0.538;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.51;ReadPosRankSum=-0.201;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:382,225:0.37:607
chr11	56468720	rs66943455	T	C	4194.77	.	AC=1;AF=0.500;AN=2;DB;DP=575;set=Intersection	GT:AD:AF:DP	0/1:357,214:0.37:571
chr11	56468817	rs74605930	G	T	3416.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.944;ClippingRankSum=0.000;DB;DP=260;ExcessHet=3.0103;FS=7.887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.24;ReadPosRankSum=1.012;SOR=1.197;set=HC	GT:AD:AF:DP	0/1:163,95:0.37:258
chr11	56468819	rs78460796	CC	TT	3500.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.224;ClippingRankSum=0.000;DB;DP=243;ExcessHet=3.0103;FS=8.195;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.53;ReadPosRankSum=0.453;SOR=1.208;set=HC	GT:AD:AF:DP	0/1:149,92:0.38:241
chr11	56468828	rs530142	G	C	3047.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.412;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=9.326;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=-1.266;QD=14.87;ReadPosRankSum=0.405;SOR=1.325;set=HC	GT:AD:AF:DP	0/1:127,78:0.38:205
chr11	56468832	rs79579174	G	T	2837.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.610;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=7.174;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=-1.257;QD=14.70;ReadPosRankSum=0.372;SOR=1.262;set=HC	GT:AD:AF:DP	0/1:119,74:0.38:193
chr11	56468835	rs588308	G	T	2723.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.477;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=4.989;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=-1.247;QD=14.64;ReadPosRankSum=0.521;SOR=1.139;set=HC	GT:AD:AF:DP	0/1:114,72:0.39:186
chr11	56468870	.	GTG	ACA	1386.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.767;ClippingRankSum=0.000;DP=98;ExcessHet=3.0103;FS=2.339;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=-1.236;QD=14.15;ReadPosRankSum=0.355;SOR=1.047;set=HC	GT:AD:AF:DP	0/1:60,38:0.39:98
chr11	56468877	.	G	A	1275.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.951;ClippingRankSum=0.000;DP=85;ExcessHet=3.0103;FS=1.131;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=-1.171;QD=15.01;ReadPosRankSum=-0.212;SOR=0.922;set=HC	GT:AD:AF:DP	0/1:50,35:0.41:85
chr11	56468881	.	C	T	1251.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.193;ClippingRankSum=0.000;DP=83;ExcessHet=3.0103;FS=1.131;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=-1.176;QD=15.08;ReadPosRankSum=0.014;SOR=0.911;set=HC	GT:AD:AF:DP	0/1:49,34:0.41:83
chr11	56468883	.	T	C	1248.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.359;ClippingRankSum=0.000;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=-1.212;QD=15.42;ReadPosRankSum=0.491;SOR=0.831;set=HC	GT:AD:AF:DP	0/1:49,32:0.40:81
chr11	56468893	rs79757227	G	A	1059.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.282;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=-1.291;QD=16.06;ReadPosRankSum=1.296;SOR=0.902;set=HC	GT:AD:AF:DP	0/1:42,24:0.36:66
chr11	56468897	.	G	C	855.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.028;ClippingRankSum=0.000;DP=62;ExcessHet=3.0103;FS=1.958;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=-1.225;QD=13.80;ReadPosRankSum=0.783;SOR=0.327;set=HC	GT:AD:AF:DP	0/1:38,24:0.39:62
chr11	56468909	rs79696743	TG	CA	753.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;JOINED;set=Intersection	GT:AD:AF:DP	0/1:33,21:0.39:54
chr11	56508525	rs556056	A	G	1794.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr11	56508619	rs545772	G	A	2143.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr11	56510623	rs513873	A	G	6024.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:1,214:1.00:215
chr11	56510672	rs577576	T	C	11401.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr11	56510694	rs1397053	T	C	11828.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr11	56570067	rs7121576	A	G	8190.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr11	57004344	rs948847	G	T	4122.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr11	57081197	rs4939134	G	C	2374.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr11	57081475	rs4939135	C	A	651.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr11	57117385	rs2276042	C	T	3630.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr11	57118466	rs371754300	CA	C	2988.73	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr11	57118472	rs373030713	T	C	1507.78	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:8,57:0.88:65
chr11	57135663	rs55655702	A	AG	1503.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr11	57137371	rs2276039	G	A	10041.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	1/1:1,379:1.00:380
chr11	57137424	rs2276038	C	T	10429.77	.	AC=2;AF=1.00;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	1/1:1,396:1.00:397
chr11	57137538	rs67821929	A	AG	2405.73	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr11	57144152	rs1867126	G	C	978.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr11	57147016	rs540687	A	G	5588.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr11	57147353	rs544079	G	C	1188.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr11	57148053	rs571651	G	T	484.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	57148175	rs669661	A	G	1801.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr11	57155001	rs536455	G	A	4714.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr11	57155288	rs630396	T	C	4342.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr11	57157405	rs490358	A	G	6193.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr11	57184218	rs4938865	C	T	686.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr11	57243588	rs2258835	A	G	16266.77	.	AC=2;AF=1.00;AN=2;DB;DP=616;set=Intersection	GT:AD:AF:DP	1/1:1,607:1.00:608
chr11	57258617	rs2729384	T	C	2726.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr11	57265400	rs2581922	C	T	673.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	57268170	rs2250673	T	C	859.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr11	57313469	rs12223229	C	G	4514.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr11	57313659	rs2649658	G	A	1295.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr11	57320044	rs2234412	T	C	1983.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr11	57334420	rs66697438	GC	G	89.82	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.45;QD=14.97;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr11	57365723	rs28362944	T	C	2162.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr11	57367222	rs1005510	C	T	1308.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr11	57413943	rs12793139	C	G	1383.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr11	57414387	rs7947357	A	G	3975.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr11	57424389	rs55969690	GA	G	510.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.92;SOR=2.066;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr11	57456244	rs549022	C	T	1260.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr11	57461225	rs141993890	GTC	G	58.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.193;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=1.838;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.25;ReadPosRankSum=0.429;SOR=1.242;set=HC	GT:AD:AF:DP	0/1:40,7:0.15:47
chr11	57463267	rs200575894	C	CAA	179.82	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;ClippingRankSum=-0.000;DB;DP=18;ExcessHet=3.0103;FS=6.990;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.83;ReadPosRankSum=-1.834;SOR=4.407;set=HC	GT:AD:AF:DP	0/1:2,11:0.85:13
chr11	57463500	rs1783978	T	C	2619.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr11	57472185	rs56088923	T	G	1914.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr11	57505520	.	CT	C	165.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.460;ClippingRankSum=0.000;DP=174;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.05;ReadPosRankSum=2.043;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:121,37:0.23:158
chr11	57505611	.	C	A	2341.77	.	AC=2;AF=1.00;AN=2;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr11	57509429	rs635663	A	G	4539.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr11	57571232	rs11229137	C	T	5478.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr11	57571336	.	T	TA	73.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.598;ClippingRankSum=0.000;DP=112;ExcessHet=3.0103;FS=2.512;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.92;ReadPosRankSum=0.234;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:64,16:0.20:80
chr11	57581613	rs623541	C	A	251.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr11	57799183	rs7123727	C	T	6439.77	.	AC=1;AF=0.500;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	0/1:139,282:0.67:421
chr11	57799371	rs1374570	G	C	2874.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:30,109:0.78:139
chr11	57876436	rs7935428	C	A	2894.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:68,126:0.65:194
chr11	57876682	rs61738000	C	T	2939.77	.	AC=1;AF=0.500;AN=2;DB;DP=529;set=Intersection	GT:AD:AF:DP	0/1:350,170:0.33:520
chr11	57947264	rs11229273	C	G	2211.77	.	AC=1;AF=0.500;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	0/1:298,130:0.30:428
chr11	57958775	rs7120468	C	T	3851.77	.	AC=1;AF=0.500;AN=2;DB;DP=642;set=Intersection	GT:AD:AF:DP	0/1:421,212:0.33:633
chr11	57958972	rs1451317	C	A	530.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.618;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.10;ReadPosRankSum=-1.147;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:73,31:0.30:104
chr11	57971195	rs11229279	G	A	4064.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.495;ClippingRankSum=0.000;DB;DP=387;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.56;ReadPosRankSum=0.116;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:267,118:0.31:385
chr11	57971201	rs11229280	G	A	4273.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.426;ClippingRankSum=0.000;DB;DP=398;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.79;ReadPosRankSum=-0.343;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:270,126:0.32:396
chr11	57982229	rs1966836	A	G	1987.77	.	AC=1;AF=0.500;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	0/1:275,116:0.30:391
chr11	57982584	rs1966835	T	C	2129.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.646;ClippingRankSum=0.000;DB;DP=388;ExcessHet=3.0103;FS=0.399;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=-3.330;QD=5.50;ReadPosRankSum=0.661;SOR=0.649;set=HC	GT:AD:AF:DP	0/1:266,121:0.31:387
chr11	57982620	rs1966834	A	G	2561.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.109;ClippingRankSum=0.000;DB;DP=483;ExcessHet=3.0103;FS=0.560;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-3.296;QD=5.34;ReadPosRankSum=-1.293;SOR=0.767;set=HC	GT:AD:AF:DP	0/1:328,152:0.32:480
chr11	57982726	rs1993089	G	T	1485.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.566;ClippingRankSum=0.000;DB;DP=322;ExcessHet=3.0103;FS=0.460;MLEAC=1;MLEAF=0.500;MQ=59.01;MQRankSum=-7.491;QD=4.75;ReadPosRankSum=1.411;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:227,86:0.27:313
chr11	57982763	rs1993088	A	G	1098.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.673;ClippingRankSum=0.000;DB;DP=254;ExcessHet=3.0103;FS=1.154;MLEAC=1;MLEAF=0.500;MQ=57.55;MQRankSum=-11.790;QD=4.36;ReadPosRankSum=-0.826;SOR=0.790;set=HC	GT:AD:AF:DP	0/1:194,58:0.23:252
chr11	57982832	rs2867400	T	A	1681.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.146;ClippingRankSum=0.000;DB;DP=406;ExcessHet=3.0103;FS=3.776;MLEAC=1;MLEAF=0.500;MQ=58.30;MQRankSum=-12.289;QD=4.16;ReadPosRankSum=-2.121;SOR=0.978;set=HC	GT:AD:AF:DP	0/1:298,106:0.26:404
chr11	57982896	rs2903566	G	T	3901.77	.	AC=1;AF=0.500;AN=2;DB;DP=675;set=Intersection	GT:AD:AF:DP	0/1:457,214:0.32:671
chr11	57983194	rs7103033	A	G	2629.77	.	AC=1;AF=0.500;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	0/1:267,138:0.34:405
chr11	57995777	rs11229301	G	A	2214.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:35,94:0.73:129
chr11	57996312	rs4245219	C	G	4471.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr11	58034543	rs10792156	C	T	2082.77	.	AC=1;AF=0.500;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	0/1:242,114:0.32:356
chr11	58125620	rs4127353	T	C	5958.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:2,221:0.99:223
chr11	58126305	rs4939208	A	T	7109.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr11	58190136	rs4298923	A	G	1547.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:48,70:0.59:118
chr11	58207035	rs201567144	AT	A	2056.73	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:95,134:0.59:229
chr11	58207204	rs4938895	A	G	7370.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr11	58318619	rs1047979	C	G	1913.77	.	AC=1;AF=0.500;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	0/1:267,120:0.31:387
chr11	58343324	rs137856485	G	C	1052.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:83,56:0.40:139
chr11	58347118	rs193214784	G	A	1234.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:33,58:0.64:91
chr11	58378382	rs2245938	G	C	570.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:16,24:0.60:40
chr11	58379663	rs139680226	CGT	C	138.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.155;ClippingRankSum=0.000;DB;DP=244;ExcessHet=3.0103;FS=0.809;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.61;ReadPosRankSum=-0.289;SOR=0.581;set=HC	GT:AD:AF:DP	0/1:205,24:0.10:229
chr11	58380192	rs35224542	C	CT	168.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.109;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.11;ReadPosRankSum=-0.457;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:18,15:0.45:33
chr11	58381686	rs1938596	A	G	4825.77	.	AC=1;AF=0.500;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	0/1:106,232:0.69:338
chr11	58391501	rs1800169	G	A	1790.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:19,75:0.80:94
chr11	58391551	rs140939647	G	A	2978.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:38,124:0.77:162
chr11	58478026	rs675423	G	A	2819.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:47,122:0.72:169
chr11	58478039	rs675757	T	C	3235.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:52,138:0.73:190
chr11	58478084	rs675815	T	C	7346.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr11	58491921	rs10896818	A	T	798.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:131,49:0.27:180
chr11	58492073	rs58778620	GTT	G	991.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:2,34:0.94:36
chr11	58602309	rs11229651	C	T	348.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.039;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.20;ReadPosRankSum=-0.776;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:84,25:0.23:109
chr11	58604712	rs11229653	T	C	963.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.655;ClippingRankSum=0.000;DB;DP=258;ExcessHet=3.0103;FS=0.519;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.81;ReadPosRankSum=0.719;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:185,68:0.27:253
chr11	58604806	rs76354468	T	A	1934.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:32,85:0.73:117
chr11	58605673	rs11229655	T	C	584.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:51,31:0.38:82
chr11	58605922	rs10896850	A	G	3865.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr11	58674952	rs35731745	G	GT	838.73	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:4,34:0.89:38
chr11	58715513	rs11229707	T	G	1286.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:37,50:0.57:87
chr11	58919813	rs10896928	A	G	14168.77	.	AC=2;AF=1.00;AN=2;DB;DP=527;set=Intersection	GT:AD:AF:DP	1/1:0,520:1.00:520
chr11	58940278	rs12796683	G	T	1353.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr11	58962910	rs3841744	TA	T	2599.73	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:60,121:0.67:181
chr11	58978434	rs180770562	C	A	2456.77	.	AC=1;AF=0.500;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	0/1:269,134:0.33:403
chr11	58978940	rs544864	C	T	2042.77	.	AC=1;AF=0.500;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	0/1:302,122:0.29:424
chr11	59056153	rs1894123	C	T	6617.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr11	59189405	rs9988824	T	C	1823.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr11	59189912	rs1453547	G	A	7039.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr11	59190499	rs11602535	T	C	2195.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr11	59190529	rs34222593	TACAA	T	1268.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr11	59210550	rs7947825	G	A	1157.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr11	59210761	rs11605572	C	G	11972.77	.	AC=2;AF=1.00;AN=2;DB;DP=467;set=Intersection	GT:AD:AF:DP	1/1:1,459:1.00:460
chr11	59211421	rs17591107	C	T	6825.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr11	59224608	rs1453544	A	G	10730.77	.	AC=2;AF=1.00;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	1/1:0,385:1.00:385
chr11	59224720	rs1453543	A	G	13315.77	.	AC=2;AF=1.00;AN=2;DB;DP=489;MQ=59.97;set=Intersection	GT:AD:AF:DP	1/1:0,483:1.00:483
chr11	59224885	rs1453542	G	C	8975.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:2,309:0.99:311
chr11	59225221	rs1453541	T	C	12188.77	.	AC=2;AF=1.00;AN=2;DB;DP=467;set=Intersection	GT:AD:AF:DP	1/1:3,459:0.99:462
chr11	59271637	rs7120079	T	C	12811.77	.	AC=2;AF=1.00;AN=2;DB;DP=478;set=Intersection	GT:AD:AF:DP	1/1:0,474:1.00:474
chr11	59282460	rs147595168	G	C	2676.77	.	AC=1;AF=0.500;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	0/1:300,157:0.34:457
chr11	59368218	rs367608218	CA	C	500.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.429;ClippingRankSum=0.000;DB;DP=310;ExcessHet=3.0103;FS=3.516;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.80;ReadPosRankSum=-0.315;SOR=0.955;set=HC	GT:AD:AF:DP	0/1:198,80:0.29:278
chr11	59369401	rs7106463	A	G	2357.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr11	59419124	.	C	CA	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.409;ClippingRankSum=0.000;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=2.025;QD=0.53;ReadPosRankSum=-0.124;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:48,12:0.20:60
chr11	59423525	.	TAAAA	T	121.75	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.169;ClippingRankSum=-0.000;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.09;ReadPosRankSum=0.792;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:15,5:0.25:20
chr11	59427010	.	G	GT	127.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.712;ClippingRankSum=0.000;DP=156;ExcessHet=3.0103;FS=1.185;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=0.000;QD=1.39;ReadPosRankSum=1.060;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:69,23:0.25:92
chr11	59480951	rs499033	T	C	7223.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr11	59516411	rs11230067	G	T	1488.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:131,77:0.37:208
chr11	59563032	.	T	C	1636.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.269;ClippingRankSum=0.000;DP=317;ExcessHet=3.0103;FS=4.008;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.25;ReadPosRankSum=0.210;SOR=0.918;set=HC	GT:AD:AF:DP	0/1:212,100:0.32:312
chr11	59611619	.	C	CTT	175.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.090;ClippingRankSum=0.000;DP=39;ExcessHet=3.0103;FS=3.716;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.02;ReadPosRankSum=1.371;SOR=1.721;set=HC	GT:AD:AF:DP	0/1:24,11:0.31:35
chr11	59612638	rs76767445	A	G	1141.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:17,52:0.75:69
chr11	59623433	rs1042613	G	A	1349.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:136,74:0.35:210
chr11	59629305	rs557564	C	T	327.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:16,15:0.48:31
chr11	59829804	rs506053	C	T	1098.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr11	59830103	rs481950	A	G	7336.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr11	59830198	rs533855	T	C	2101.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr11	59831716	rs1151065	C	A	3887.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:1,149:0.99:150
chr11	59834318	rs579721	G	A	1210.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr11	59837097	rs528823	C	T	8162.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr11	59837721	rs144234019	T	TTATGAAAA	6060.73	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr11	59858036	rs2847663	C	G	428.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr11	59860178	rs502581	G	T	1061.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr11	59940396	rs595718	A	G	6410.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.15;SOR=2.049;set=HC	GT:AD:AF:DP	1/1:0,142:1.00:142
chr11	59940400	rs2044979	C	T	6701.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.54;SOR=2.082;set=HC	GT:AD:AF:DP	1/1:0,144:1.00:144
chr11	59940403	rs2044978	A	G	6924.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.86;SOR=2.021;set=HC	GT:AD:AF:DP	1/1:0,151:1.00:151
chr11	59940407	rs592346	A	G	7061.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.14;SOR=1.996;set=HC	GT:AD:AF:DP	1/1:0,160:1.00:160
chr11	59940599	rs7232	T	A	4798.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:117,208:0.64:325
chr11	59942815	rs7935829	A	G	796.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr11	59943109	rs2278867	A	T	414.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr11	59945745	rs12453	T	C	5704.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr11	59946302	rs598862	C	T	13690.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:0,349:1.00:349
chr11	59946310	rs5792172	CA	C	4616.73	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:18,252:0.93:270
chr11	59946466	rs587634	T	A	948.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr11	59997335	rs608659	T	C	6835.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr11	60050125	rs10792260	A	G	4690.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr11	60060016	rs2044981	T	C	179.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:24,10:0.29:34
chr11	60073597	rs4644658	C	T	5207.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr11	60073702	rs3018806	A	T	6522.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr11	60102384	rs2304935	A	G	1323.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:84,64:0.43:148
chr11	60102396	rs2304934	A	G	1228.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:88,60:0.41:148
chr11	60102507	rs2304933	G	T	583.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.109;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=6.459;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=3.04;ReadPosRankSum=1.684;SOR=1.155;set=HC	GT:AD:AF:DP	0/1:149,43:0.22:192
chr11	60102631	rs10792268	A	G	270.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:43,16:0.27:59
chr11	60102790	rs1443250	G	A	689.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:5,27:0.84:32
chr11	60103096	rs11230280	A	C	188.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:15,8:0.35:23
chr11	60103112	rs12798157	T	C	149.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:9,8:0.47:17
chr11	60105199	rs2289614	G	C	443.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:51,22:0.30:73
chr11	60107470	rs2289612	C	A	3054.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:52,131:0.72:183
chr11	60152482	rs2233243	A	G	1454.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:23,59:0.72:82
chr11	60152563	rs950803	T	A	5650.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:1,211:1.00:212
chr11	60152584	rs950802	G	A	3284.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:80,150:0.65:230
chr11	60157107	rs2233252	T	G	9560.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:1,362:1.00:363
chr11	60157166	rs2233253	C	T	6256.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr11	60161438	.	TA	T	43.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.464;ClippingRankSum=0.000;DP=164;ExcessHet=3.0103;FS=2.164;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.33;ReadPosRankSum=-0.419;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:108,26:0.19:134
chr11	60163958	rs6591579	G	A	2993.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr11	60164204	rs2241920	G	A	5993.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr11	60164302	rs2241921	C	T	1293.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr11	60165352	rs3217518	ATT	A	13164.73	.	AC=1;AF=0.500;AN=2;DB;DP=541;set=Intersection	GT:AD:AF:DP	0/1:204,332:0.62:536
chr11	60172087	rs10750937	C	T	9145.77	.	AC=1;AF=0.500;AN=2;DB;DP=585;set=Intersection	GT:AD:AF:DP	0/1:167,413:0.71:580
chr11	60172273	rs10897057	A	T	1447.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:18,54:0.75:72
chr11	60173360	rs4938941	A	G	1773.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:51,85:0.62:136
chr11	60173554	rs4939353	A	G	1541.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:43,68:0.61:111
chr11	60182970	rs7131283	A	T	2458.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:52,103:0.66:155
chr11	60184191	rs3825020	G	A	7748.77	.	AC=1;AF=0.500;AN=2;DB;DP=503;set=Intersection	GT:AD:AF:DP	0/1:164,330:0.67:494
chr11	60198328	rs708229	C	T	2317.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:43,101:0.70:144
chr11	60202747	rs894590	C	A	848.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.72;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr11	60202798	rs11377519	C	CA	953.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=21.19;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr11	60230722	rs10792278	G	T	1524.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr11	60268679	rs2186918	G	C	8762.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr11	60285575	rs10736706	A	G	3679.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr11	60291413	rs6591595	C	T	2495.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr11	60296834	rs12802514	A	G	1208.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:12,51:0.81:63
chr11	60309947	rs4939400	A	T	1420.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr11	60504424	rs11363998	CT	C	365.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.376;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=0.761;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=2.433;QD=2.37;ReadPosRankSum=0.214;SOR=0.596;set=HC	GT:AD:AF:DP	0/1:100,54:0.35:154
chr11	60531264	rs12363342	A	G	398.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:88,29:0.25:117
chr11	60531346	rs1032939	T	G	1481.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:24,67:0.74:91
chr11	60534901	rs4939450	G	C	2554.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr11	60538991	rs74350083	T	C	1253.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:164,78:0.32:242
chr11	60539088	rs115197709	A	G	837.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:100,47:0.32:147
chr11	60558375	rs11602321	A	G	5736.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr11	60559805	rs931861	A	G	10884.77	.	AC=2;AF=1.00;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	1/1:0,412:1.00:412
chr11	60561613	rs751026	C	T	3212.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr11	60562975	rs4939457	G	A	1356.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr11	60567230	rs11230483	C	T	8188.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr11	60567275	rs579967	G	A	11618.77	.	AC=2;AF=1.00;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	1/1:0,438:1.00:438
chr11	60610065	rs2074420	G	A	18394.77	.	AC=2;AF=1.00;AN=2;DB;DP=687;set=Intersection	GT:AD:AF:DP	1/1:6,677:0.99:683
chr11	60617646	rs495949	T	C	27868.77	.	AC=2;AF=1.00;AN=2;DB;DP=1060;set=Intersection	GT:AD:AF:DP	1/1:0,1059:1.00:1059
chr11	60620585	rs2467642	A	G	12005.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.82;SOR=0.816;set=HC	GT:AD:AF:DP	1/1:0,274:1.00:274
chr11	60620590	rs2428461	C	G	11972.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.84;SOR=0.795;set=HC	GT:AD:AF:DP	1/1:0,267:1.00:267
chr11	60635091	rs550479	T	C	4382.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr11	60637164	rs489172	C	T	20081.77	.	AC=1;AF=0.500;AN=2;DB;DP=1394;MQ=60.01;set=Intersection	GT:AD:AF:DP	0/1:489,889:0.65:1378
chr11	60638461	rs10897122	C	T	35746.77	.	AC=2;AF=1.00;AN=2;DB;DP=801;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.31;SOR=1.110;set=HC	GT:AD:AF:DP	1/1:0,789:1.00:789
chr11	60638470	rs566411	A	G	37868.77	.	AC=2;AF=1.00;AN=2;DB;DP=903;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.60;SOR=1.062;set=HC	GT:AD:AF:DP	1/1:0,889:1.00:889
chr11	60658566	rs375742436	ACC	A	36.82	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.36;ReadPosRankSum=-0.000;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr11	60689445	rs555835	T	C	8178.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:2,304:0.99:306
chr11	60695301	rs575123	C	A	2499.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr11	60696399	rs61751216	G	A	7922.77	.	AC=1;AF=0.500;AN=2;DB;DP=570;set=Intersection	GT:AD:AF:DP	0/1:205,361:0.64:566
chr11	60703076	rs11230522	C	T	456.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr11	60703777	rs55920775	G	A	5676.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:1,200:1.00:201
chr11	60705454	rs2905692	A	G	6753.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr11	60750048	rs2905506	T	C	3656.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr11	60750240	rs3019541	G	A	5435.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr11	60750298	rs72195127	GTCTGCAGGGAC	G	2759.73	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr11	60776186	rs11230562	C	T	1993.77	.	AC=1;AF=0.500;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	0/1:280,123:0.31:403
chr11	60776209	rs11230563	C	T	5510.77	.	AC=1;AF=0.500;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	0/1:121,235:0.66:356
chr11	60776306	rs2074225	C	T	10300.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	1/1:0,379:1.00:379
chr11	60776333	rs72926536	C	T	5624.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.553;ClippingRankSum=0.000;DB;DP=385;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.72;ReadPosRankSum=-0.777;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:131,251:0.66:382
chr11	60776333	.	CA	TG	2648	.	AC=1;AF=0.500;AN=2;BRF=0.43;FR=0.5000;HP=1;HapScore=1;MGOF=19;MMLQ=24;MQ=60.0;NF=74;NR=89;PP=2648;QD=20;SC=TGGGCGGAGTCACTGAAGCCC;SbPval=0.56;Source=Platypus;TC=253;TCF=116;TCR=137;TR=163;WE=60776342;WS=60776323;set=Platypus	GT:AD:AF:DP	0/1:90,163:0.64:253
chr11	60776334	rs2905518	A	G	14739.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.59;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:0,382:1.00:382
chr11	60776465	rs11230564	A	G	494.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:70,27:0.28:97
chr11	60777073	rs12360861	G	A	863.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:21,38:0.64:59
chr11	60778513	rs74860834	T	C	1932.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:169,104:0.38:273
chr11	60778650	rs150035626	C	CGTGT	1293.73	.	AC=1;AF=0.500;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	0/1:143,43:0.23:186
chr11	60783108	rs2074229	C	T	9607.77	.	AC=1;AF=0.500;AN=2;DB;DP=652;set=Intersection	GT:AD:AF:DP	0/1:223,426:0.66:649
chr11	60783126	rs3019556	C	T	34579.77	.	AC=2;AF=1.00;AN=2;DB;DP=765;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.56;SOR=0.917;set=HC	GT:AD:AF:DP	1/1:0,759:1.00:759
chr11	60783135	rs3019557	A	G	35844.77	.	AC=2;AF=1.00;AN=2;DB;DP=846;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.88;SOR=0.841;set=HC	GT:AD:AF:DP	1/1:0,836:1.00:836
chr11	60784934	rs2074231	A	G	1431.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr11	60785038	rs2074232	A	G	5639.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr11	60785352	rs1050922	A	G	8740.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr11	60785463	rs12417503	C	T	922.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:24,35:0.59:59
chr11	60785464	rs2074233	G	A	553.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:35,24:0.41:59
chr11	60886519	rs79811054	T	C	6834.77	.	AC=1;AF=0.500;AN=2;DB;DP=462;set=Intersection	GT:AD:AF:DP	0/1:155,294:0.65:449
chr11	60890563	rs4245224	C	T	1539.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:130,82:0.39:212
chr11	60891283	rs7103357	A	G	751.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:22,61:0.73:83
chr11	60891310	rs7106643	T	C	6931.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr11	60891421	rs12364279	C	T	8356.77	.	AC=1;AF=0.500;AN=2;DB;DP=591;set=Intersection	GT:AD:AF:DP	0/1:181,388:0.68:569
chr11	60892606	rs637186	A	G	13918.77	.	AC=2;AF=1.00;AN=2;DB;DP=529;set=Intersection	GT:AD:AF:DP	1/1:0,523:1.00:523
chr11	60893235	rs2229177	C	T	2953.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.014;ClippingRankSum=0.000;DB;DP=676;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.44;ReadPosRankSum=0.264;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:477,188:0.28:665
chr11	60899767	rs754382	A	G	2386.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr11	60906450	rs508970	A	G	782.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:60,35:0.37:95
chr11	61044021	.	TA	T	334.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.179;ClippingRankSum=0.000;DP=153;ExcessHet=3.0103;FS=2.811;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.50;ReadPosRankSum=-1.002;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:87,47:0.35:134
chr11	61089771	rs28720291	C	T	433.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.366;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=0.795;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.64;ReadPosRankSum=2.280;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:131,33:0.20:164
chr11	61100308	rs2512810	G	C	1521.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.84;SOR=2.746;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr11	61106525	rs2512809	C	T	1472.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr11	61106892	rs2513329	G	C	5233.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr11	61108974	rs2260655	G	A	4224.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr11	61110169	rs4939514	A	C	14905.77	.	AC=2;AF=1.00;AN=2;DB;DP=543;set=Intersection	GT:AD:AF:DP	1/1:0,532:1.00:532
chr11	61111354	.	C	T	3716.77	.	AC=1;AF=0.500;AN=2;DP=590;MQ=59.98;set=Intersection	GT:AD:AF:DP	0/1:382,205:0.35:587
chr11	61111831	rs145461522	CTT	C,CT	2069.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.185;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=2.525;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=14.78;ReadPosRankSum=0.641;SOR=1.255;set=HC	GT:AD:AF:DP	1/2:14,93,33:0.66,0.24:140
chr11	61112802	rs2305465	C	T	6256.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr11	61118756	.	CTTT	C	117.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.383;ClippingRankSum=-0.000;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.45;MQRankSum=-0.000;QD=16.82;ReadPosRankSum=-1.383;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:2,5:0.71:7
chr11	61123965	rs76030461	A	G	1988.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr11	61165280	rs3741265	G	A	2135.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr11	61165731	rs11382548	C	CA	12150.73	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr11	61165741	rs10897158	G	C	12120.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr11	61179285	rs3019198	G	A	3340.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr11	61197460	rs34378918	GC	G	2805.73	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr11	61204361	rs896831	A	C	4357.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr11	61205434	rs879647	G	A	1500.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr11	61205676	rs5792226	C	CT	882.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.042;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=5.049;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=0.000;QD=12.98;ReadPosRankSum=-0.837;SOR=0.237;set=HC	GT:AD:AF:DP	0/1:13,55:0.81:68
chr11	61249383	rs3019200	C	A	9670.77	.	AC=2;AF=1.00;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	1/1:0,366:1.00:366
chr11	61253200	rs3019187	G	A	1248.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr11	61253973	rs2957858	A	G	5628.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr11	61254376	rs3019188	G	C	3891.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr11	61490486	rs198426	C	T	4560.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:87,199:0.70:286
chr11	61491097	rs566009	A	G	2456.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr11	61505168	rs198444	G	A	3003.77	.	AC=1;AF=0.500;AN=2;DB;DP=572;set=Intersection	GT:AD:AF:DP	0/1:394,174:0.31:568
chr11	61505696	rs198443	G	T	3857.77	.	AC=1;AF=0.500;AN=2;DB;DP=641;set=Intersection	GT:AD:AF:DP	0/1:415,217:0.34:632
chr11	61508522	rs198440	A	G	390.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:23,16:0.41:39
chr11	61523300	rs10709102	GA	G	1527.73	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:28,46:0.62:74
chr11	61524974	rs198460	G	A	5967.77	.	AC=1;AF=0.500;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	0/1:148,265:0.64:413
chr11	61525020	rs198459	G	A	4051.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:109,182:0.63:291
chr11	61533797	rs4963418	A	T	1536.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:24,58:0.71:82
chr11	61534872	rs547589	A	C	12815.77	.	AC=2;AF=1.00;AN=2;DB;DP=473;set=Intersection	GT:AD:AF:DP	1/1:0,469:1.00:469
chr11	61536583	rs579383	G	A	1227.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:103,69:0.40:172
chr11	61539020	rs149803	C	G	10191.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.030;ClippingRankSum=0.000;DB;DP=807;ExcessHet=3.0103;FS=1.781;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.82;ReadPosRankSum=3.775;SOR=0.840;set=HC	GT:AD:AF:DP	0/1:316,479:0.60:795
chr11	61543499	rs174528	T	C	2259.77	.	AC=1;AF=0.500;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	0/1:286,133:0.32:419
chr11	61543961	rs174529	T	C	1447.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:165,82:0.33:247
chr11	61547237	rs108499	C	T	2955.77	.	AC=1;AF=0.500;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	0/1:268,160:0.37:428
chr11	61548559	rs509360	A	G	9446.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:1,325:1.00:326
chr11	61548874	rs174532	G	A	2778.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:48,105:0.69:153
chr11	61549025	rs174533	G	A	2687.77	.	AC=1;AF=0.500;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	0/1:198,136:0.41:334
chr11	61551356	rs174535	T	C	959.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:108,54:0.33:162
chr11	61551927	rs174536	A	C	609.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:54,30:0.36:84
chr11	61557803	rs102275	T	C	589.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:24,26:0.52:50
chr11	61557826	rs102274	T	C	918.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:38,38:0.50:76
chr11	61560081	rs174538	G	A	1909.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:162,100:0.38:262
chr11	61569830	rs174546	C	T	627.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:96,37:0.28:133
chr11	61570783	rs174547	T	C	3045.77	.	AC=1;AF=0.500;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	0/1:278,160:0.37:438
chr11	61579463	rs174554	A	G	516.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:48,28:0.37:76
chr11	61593396	rs138441334	G	A	1430.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:38,55:0.59:93
chr11	61593816	rs174568	C	T	2801.77	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:220,143:0.39:363
chr11	61615803	rs174589	C	G	1436.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:123,67:0.35:190
chr11	61624414	rs174602	T	C	1301.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:90,65:0.42:155
chr11	61624705	rs498793	T	C	6176.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr11	61624885	rs526126	G	C	2481.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:55,104:0.65:159
chr11	61631282	rs520298	C	T	4035.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:83,182:0.69:265
chr11	61631331	rs639394	A	G	2329.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:49,100:0.67:149
chr11	61633182	rs482548	C	T	1572.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:80,73:0.48:153
chr11	61641211	rs6591665	A	G	1336.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr11	61641396	rs75306442	C	T	1266.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.481;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.08;ReadPosRankSum=-0.447;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:27,63:0.70:90
chr11	61647427	rs174635	T	G	2204.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr11	61658629	rs693672	T	C	4490.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr11	61658800	rs174465	C	T	1430.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr11	61671956	rs174472	A	G	4314.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:72,190:0.73:262
chr11	61672381	rs1076180	G	A	710.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:40,36:0.47:76
chr11	61687674	rs2524290	G	A	2963.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr11	61724514	rs195162	C	T	2037.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr11	61725599	rs113492158	A	ATCCTCCTCC	6886.73	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr11	61726871	rs195158	G	T	1752.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr11	61730036	rs149698	G	A	1926.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.681;ClippingRankSum=0.000;DB;DP=403;ExcessHet=3.0103;FS=0.403;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.88;ReadPosRankSum=2.189;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:281,114:0.29:395
chr11	61731462	rs34046408	CA	C	391.27	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.955;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=11.781;MLEAC=1;MLEAF=0.500;MQ=60.46;MQRankSum=0.815;QD=10.03;ReadPosRankSum=-2.443;SOR=0.024;set=HC	GT:AD:AF:DP	0/1:7,32:0.82:39
chr11	61731534	rs195155	G	T	3942.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr11	61735553	rs11271453	T	TGCTGCAGATTGGGAA	6087.73	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr11	61895541	rs1675130	A	G	1864.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr11	61895741	rs1675131	A	G	7634.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr11	61896215	rs1792946	G	A	4113.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr11	61897197	rs1792944	C	T	1646.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr11	61897359	rs1675133	C	T	13669.77	.	AC=2;AF=1.00;AN=2;DB;DP=505;set=Intersection	GT:AD:AF:DP	1/1:0,495:1.00:495
chr11	61906299	rs1614060	A	G	14288.77	.	AC=2;AF=1.00;AN=2;DB;DP=523;set=Intersection	GT:AD:AF:DP	1/1:0,517:1.00:517
chr11	61906374	rs1675126	T	C	15290.77	.	AC=2;AF=1.00;AN=2;DB;DP=593;set=Intersection	GT:AD:AF:DP	1/1:0,586:1.00:586
chr11	61907909	rs1675124	A	G	2099.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr11	61908440	rs2277283	T	C	7601.77	.	AC=1;AF=0.500;AN=2;DB;DP=515;set=Intersection	GT:AD:AF:DP	0/1:152,353:0.70:505
chr11	61908672	rs1675123	G	A	1184.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr11	61913196	rs7129085	G	T	1496.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr11	61914056	rs11230931	G	A	3533.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr11	61915823	rs3890102	A	G	1064.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:29,49:0.63:78
chr11	61959725	rs3831484	GTC	G	2230.73	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:73,68:0.48:141
chr11	61960763	rs11441356	T	TC	4725.73	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:112,153:0.58:265
chr11	61960809	rs7951859	C	A	4967.77	.	AC=1;AF=0.500;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	0/1:199,238:0.54:437
chr11	61960827	rs2232941	T	C	5317.77	.	AC=1;AF=0.500;AN=2;DB;DP=476;set=Intersection	GT:AD:AF:DP	0/1:215,258:0.55:473
chr11	62010667	rs2232949	T	C	2400.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr11	62037583	rs11603383	G	A	2895.77	.	AC=1;AF=0.500;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	0/1:250,153:0.38:403
chr11	62040519	rs17709552	A	G	4702.77	.	AC=1;AF=0.500;AN=2;DB;DP=577;set=Intersection	GT:AD:AF:DP	0/1:331,239:0.42:570
chr11	62040655	rs72919472	C	T	1517.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;MQ=60.08;set=Intersection	GT:AD:AF:DP	0/1:72,65:0.47:137
chr11	62040694	rs59964144	T	TACAC	1282.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.308;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=4.410;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=0.000;QD=21.03;ReadPosRankSum=3.603;SOR=0.171;set=HC	GT:AD:AF:DP	0/1:25,36:0.59:61
chr11	62105391	rs2513749	C	T	395.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:20,19:0.49:39
chr11	62105441	rs3741245	T	C	1485.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:53,69:0.57:122
chr11	62123989	rs67821209	T	A	1980.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:69,85:0.55:154
chr11	62124696	rs143687152	C	CTTTTG	618.19	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:1,15:0.94:16
chr11	62156572	rs74692811	G	A	3486.77	.	AC=1;AF=0.500;AN=2;DB;DP=478;set=Intersection	GT:AD:AF:DP	0/1:292,174:0.37:466
chr11	62158886	rs2958531	G	T	3511.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr11	62158924	rs2958532	C	T	1374.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:138,74:0.35:212
chr11	62159187	rs3832779	G	GA	1399.73	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:19,40:0.68:59
chr11	62190448	rs11231085	C	G	18740.77	.	AC=2;AF=1.00;AN=2;DB;DP=690;set=Intersection	GT:AD:AF:DP	1/1:0,685:1.00:685
chr11	62201458	rs4084164	A	G	4704.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr11	62284179	rs142437234	TTA	T	110.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.121;ClippingRankSum=0.000;DB;DP=312;ExcessHet=3.0103;FS=1.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.37;ReadPosRankSum=-0.629;SOR=0.474;set=HC	GT:AD:AF:DP	0/1:270,29:0.10:299
chr11	62290876	rs77701059	G	A	31734.77	.	AC=2;AF=1.00;AN=2;DB;DP=1192;set=Intersection	GT:AD:AF:DP	1/1:2,1183:1.00:1185
chr11	62292882	rs566144	G	T	31545.77	.	AC=2;AF=1.00;AN=2;DB;DP=1154;set=Intersection	GT:AD:AF:DP	1/1:0,1132:1.00:1132
chr11	62293948	rs486903	G	A	25643.77	.	AC=2;AF=1.00;AN=2;DB;DP=924;set=Intersection	GT:AD:AF:DP	1/1:0,911:1.00:911
chr11	62328038	rs11231144	T	C	4017.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr11	62334096	rs7124057	A	G	1256.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr11	62334908	rs1061093	G	C	6472.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr11	62335180	rs71056528	A	ATT	723.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.780;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.385;QD=21.93;ReadPosRankSum=1.451;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:1,32:0.97:33
chr11	62365619	rs11231155	A	G	4847.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr11	62369018	rs12226821	C	G	9056.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr11	62369881	rs35156678	G	A	13597.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.15;SOR=2.580;set=HC	GT:AD:AF:DP	1/1:0,308:1.00:308
chr11	62369884	rs35880596	C	G	13565.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.77;SOR=2.683;set=HC	GT:AD:AF:DP	1/1:0,303:1.00:303
chr11	62370155	rs71490394	G	A	16553.77	.	AC=2;AF=1.00;AN=2;DB;DP=610;set=Intersection	GT:AD:AF:DP	1/1:0,595:1.00:595
chr11	62370490	rs71458425	C	CGAGGGCCG	38730.73	.	AC=2;AF=1.00;AN=2;DB;DP=871;set=Intersection	GT:AD:AF:DP	1/1:0,843:1.00:843
chr11	62378660	rs12808829	G	A	8561.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr11	62378801	rs11553576	T	C	10418.77	.	AC=2;AF=1.00;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	1/1:2,394:0.99:396
chr11	62380027	rs113222038	C	T	562.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr11	62380732	rs4387351	T	C	2523.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr11	62381106	rs1799959	G	C	7805.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr11	62381483	rs72927237	T	C	2621.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr11	62381703	rs35904570	C	CT	25023.73	.	AC=2;AF=1.00;AN=2;DB;DP=679;set=Intersection	GT:AD:AF:DP	1/1:0,674:1.00:674
chr11	62381808	rs1801144	G	C	31905.77	.	AC=2;AF=1.00;AN=2;DB;DP=1167;set=Intersection	GT:AD:AF:DP	1/1:2,1156:1.00:1158
chr11	62384869	rs4963224	T	C	13613.77	.	AC=2;AF=1.00;AN=2;DB;DP=528;set=Intersection	GT:AD:AF:DP	1/1:1,519:1.00:520
chr11	62394297	rs117510149	G	C	2935.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr11	62394881	rs7949030	A	G	5856.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr11	62397177	rs948683	C	G	8668.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr11	62400016	rs10897289	T	C	8373.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:1,306:1.00:307
chr11	62401716	rs2957121	A	G	3176.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr11	62432815	rs4489748	T	C	1863.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr11	62433781	.	CA	C	349.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.707;ClippingRankSum=0.000;DP=432;ExcessHet=3.0103;FS=3.034;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.84;ReadPosRankSum=3.512;SOR=0.915;set=HC	GT:AD:AF:DP	0/1:328,89:0.21:417
chr11	62434173	rs11231181	G	A	19284.77	.	AC=2;AF=1.00;AN=2;DB;DP=697;set=Intersection	GT:AD:AF:DP	1/1:0,684:1.00:684
chr11	62438750	rs17637597	T	C	6480.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:1,235:1.00:236
chr11	62438846	rs3809079	G	A	3545.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr11	62459994	rs2850597	A	G	6368.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr11	62460066	rs2850596	T	C	6365.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr11	62488916	rs34425182	T	TG	1142.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.868;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.82;MQRankSum=0.000;QD=10.88;ReadPosRankSum=1.458;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:31,74:0.70:105
chr11	62488917	rs11449262	G	GGA	250.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.818;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.88;MQRankSum=-0.578;QD=2.37;ReadPosRankSum=-1.484;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:78,28:0.26:106
chr11	62489267	rs496032	C	T	19687.77	.	AC=2;AF=1.00;AN=2;DB;DP=715;set=Intersection	GT:AD:AF:DP	1/1:0,707:1.00:707
chr11	62494700	rs199865096	G	GCGCCGC	5198.73	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr11	62500444	.	C	CT	247.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.911;ClippingRankSum=0.000;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.72;ReadPosRankSum=0.237;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:63,28:0.31:91
chr11	62546491	.	G	GT	599.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.409;ClippingRankSum=0.000;DP=378;ExcessHet=3.0103;FS=1.668;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.323;QD=2.88;ReadPosRankSum=0.017;SOR=0.912;set=HC	GT:AD:AF:DP	0/1:133,75:0.36:208
chr11	62555059	rs3087924	G	A	1179.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr11	62563353	rs539465	G	A	11825.77	.	AC=2;AF=1.00;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	1/1:0,422:1.00:422
chr11	62564009	rs4693	T	C	4390.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr11	62564538	.	C	CA	114.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.056;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=1.281;QD=3.02;ReadPosRankSum=0.838;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:22,16:0.42:38
chr11	62565908	rs373725740	TA	T	110.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.062;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=0.804;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.930;QD=0.73;ReadPosRankSum=-1.804;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:120,32:0.21:152
chr11	62603644	rs117762989	C	T	315.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr11	62638197	.	A	AT	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.019;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=5.084;MLEAC=1;MLEAF=0.500;MQ=60.38;MQRankSum=0.000;QD=0.73;ReadPosRankSum=0.613;SOR=1.158;set=HC	GT:AD:AF:DP	0/1:41,11:0.21:52
chr11	62638328	.	AT	A	456.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.963;ClippingRankSum=0.000;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=0.000;QD=11.71;ReadPosRankSum=0.250;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:25,14:0.36:39
chr11	62638330	rs11231260	T	A	749.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.823;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=1.310;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=0.000;QD=19.73;ReadPosRankSum=1.133;SOR=1.051;set=HC	GT:AD:AF:DP	0/1:17,21:0.55:38
chr11	62638331	.	ATT	A	379.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.059;ClippingRankSum=0.000;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=0.000;QD=9.74;ReadPosRankSum=0.146;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:26,13:0.33:39
chr11	62638333	rs55725256	T	A	758.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.641;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=1.252;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=0.000;QD=19.46;ReadPosRankSum=1.340;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:18,21:0.54:39
chr11	62638336	rs199540960	T	A	555.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.520;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=-1.067;QD=12.92;ReadPosRankSum=2.164;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:16,27:0.63:43
chr11	62652063	rs489381	A	G	8770.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:0,328:1.00:328
chr11	62652779	rs4726	C	T	9540.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:2,343:0.99:345
chr11	62744899	rs3017670	A	G	2493.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr11	62747145	rs3017671	A	G	8697.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr11	62748289	rs4149174	A	G	1952.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr11	62847453	rs7945121	T	C	4234.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr11	62847562	rs7926818	G	T	1020.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr11	62848367	rs10897341	A	C	508.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr11	62848445	rs11231340	A	G	686.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:24,30:0.56:54
chr11	62848487	rs11231341	A	C	1910.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr11	62848568	rs11231342	C	G	1028.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:30,46:0.61:76
chr11	62848995	rs6591733	G	C	5489.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr11	62850684	rs4963356	C	T	746.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:17,29:0.63:46
chr11	62863518	rs7113279	A	G	7418.77	.	AC=1;AF=0.500;AN=2;DB;DP=485;set=Intersection	GT:AD:AF:DP	0/1:139,335:0.71:474
chr11	62871460	rs12283166	C	T	785.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:13,29:0.69:42
chr11	62886319	rs948060	G	C	3118.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr11	62886609	rs10897367	A	T	521.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.485;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=2.521;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.50;ReadPosRankSum=0.802;SOR=0.975;set=HC	GT:AD:AF:DP	0/1:115,34:0.23:149
chr11	62886800	rs4963245	G	C	1962.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:45,82:0.65:127
chr11	62902172	rs1939782	A	C	5394.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:1,200:1.00:201
chr11	62910849	rs1939749	T	C	6084.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr11	62911079	rs1939748	G	C	7669.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr11	62933774	rs2226866	C	G	863.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:94,46:0.33:140
chr11	62951064	rs1525072	C	A	5858.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:2,215:0.99:217
chr11	62995875	rs7106186	G	A	3421.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr11	63057925	rs1790218	G	A	13432.77	.	AC=2;AF=1.00;AN=2;DB;DP=503;set=Intersection	GT:AD:AF:DP	1/1:0,500:1.00:500
chr11	63064823	rs576641	T	C	10097.77	.	AC=2;AF=1.00;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	1/1:0,370:1.00:370
chr11	63064970	rs575009	T	G	8783.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:1,304:1.00:305
chr11	63066903	rs515213	T	C	2329.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr11	63067138	rs513338	T	G	4789.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr11	63067181	rs140991402	A	AGTGTGT	1441.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.539;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=0.500;QD=33.53;ReadPosRankSum=1.736;SOR=1.708;set=HC	GT:AD:AF:DP	1/1:2,41:0.95:43
chr11	63069715	rs557658	A	G	1135.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr11	63072184	rs72926329	C	T	2704.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:71,117:0.62:188
chr11	63072310	rs1201559	C	T	9310.77	.	AC=2;AF=1.00;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	1/1:2,351:0.99:353
chr11	63129782	rs517655	A	G	3910.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr11	63129876	rs516763	T	G	7224.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:1,271:1.00:272
chr11	63138482	rs566456	G	A	2629.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:2,104:0.98:106
chr11	63175630	rs142638406	G	A	4121.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:89,183:0.67:272
chr11	63175800	rs7109920	A	G	1073.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:102,57:0.36:159
chr11	63176367	rs4088469	G	A	1014.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:95,53:0.36:148
chr11	63177242	rs78795943	A	AT	1710.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.852;ClippingRankSum=0.000;DB;DP=384;ExcessHet=3.0103;FS=4.446;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.57;ReadPosRankSum=0.039;SOR=0.932;set=HC	GT:AD:AF:DP	0/1:264,110:0.29:374
chr11	63258416	rs10897424	T	C	1770.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.93;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr11	63274120	rs12272556	G	C	1401.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:34,56:0.62:90
chr11	63278621	rs2239679	C	G	3293.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:71,138:0.66:209
chr11	63313644	rs584905	T	C	1939.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr11	63357919	rs593759	C	T	7117.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr11	63413962	rs147319344	AAAAT	A	1312.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.76;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr11	63487386	rs542998	T	C	9976.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	1/1:0,355:1.00:355
chr11	63523428	rs112296263	C	CA	61.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.605;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=6.611;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.93;ReadPosRankSum=1.752;SOR=0.127;set=HC	GT:AD:AF:DP	0/1:22,10:0.31:32
chr11	63533334	.	TTCC	T	303.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.057;ClippingRankSum=0.000;DP=228;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=2.941;QD=1.38;ReadPosRankSum=1.149;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:197,23:0.10:220
chr11	63636181	rs12792726	G	T	214.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:31,14:0.31:45
chr11	63657494	rs4980528	G	A	133.94	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:1,6:0.86:7
chr11	63663130	.	CTTTTTTTTTTTT	C	1608.92	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.311;ClippingRankSum=0.000;DP=102;ExcessHet=3.0103;FS=21.515;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.867;QD=30.94;ReadPosRankSum=3.647;SOR=3.092;set=HC	GT:AD:AF:DP	0/1:7,45:0.87:52
chr11	63668557	rs224174	C	T	3454.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr11	63670387	rs1486936	C	G	1984.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:25,68:0.73:93
chr11	63673603	.	CTG	C,CTGTG	1825.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=140;MQ=60.08;set=Intersection	GT:AF:DP	1/2:0.70,0.21:80
chr11	63676313	rs56263226	G	GC	772.73	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:41,34:0.45:75
chr11	63679369	rs320108	T	C	322.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr11	63680045	rs320109	C	A	2758.77	.	AC=1;AF=0.500;AN=2;DB;DP=600;set=Intersection	GT:AD:AF:DP	0/1:434,162:0.27:596
chr11	63680297	rs320110	A	G	18869.77	.	AC=2;AF=1.00;AN=2;DB;DP=718;set=Intersection	GT:AD:AF:DP	1/1:1,712:1.00:713
chr11	63681513	rs10897461	T	C	6843.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr11	63681648	rs4980533	G	A	2629.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:51,110:0.68:161
chr11	63682312	rs4375445	G	C	27255.77	.	AC=2;AF=1.00;AN=2;DB;DP=604;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.35;SOR=0.730;set=HC	GT:AD:AF:DP	1/1:0,601:1.00:601
chr11	63682312	.	GAGCCTG	CAGGCTG,CAGGCTC	2934	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.54;FR=0.5000,0.5000;HP=1;HapScore=1;MGOF=1;MMLQ=28;MQ=59.99;NF=165,165;NR=156,155;PP=2576,2934;QD=20;SC=AGGGGCAGCTGAGCCTGAGCT;SbPval=0.57;Source=Platypus;TC=334;TCF=169;TCR=165;TR=321,320;WE=63682327;WS=63682302;set=Platypus	GT:AF:DP	0/1:0.96:334
chr11	63682315	rs34212439	C	G	27083.77	.	AC=2;AF=1.00;AN=2;DB;DP=603;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.06;SOR=0.737;set=HC	GT:AD:AF:DP	1/1:0,601:1.00:601
chr11	63682317	rs113350066	TG	T	6241.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.537;ClippingRankSum=0.000;DB;DP=602;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.54;ReadPosRankSum=1.683;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:389,203:0.34:592
chr11	63682318	rs11231638	G	C	13809.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.370;ClippingRankSum=0.000;DB;DP=597;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.33;ReadPosRankSum=-1.756;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:203,389:0.66:592
chr11	63682319	rs57942405	A	C	6250.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=603;set=Intersection	GT:AD:AF:DP	0/1:394,204:0.34:598
chr11	63682869	rs3802941	A	G	2355.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:43,101:0.70:144
chr11	63706441	rs28683669	G	A	92.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.191;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=3.424;MLEAC=1;MLEAF=0.500;MQ=62.45;MQRankSum=1.550;QD=8.43;ReadPosRankSum=1.450;SOR=2.179;set=HC	GT:AD:AF:DP	0/1:5,6:0.55:11
chr11	63713239	rs3740636	G	A	1247.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:15,53:0.78:68
chr11	63713317	rs3740637	G	A	449.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:94,33:0.26:127
chr11	63714142	rs140180729	G	C	92.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.634;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=1.557;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.21;ReadPosRankSum=-0.474;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:33,9:0.21:42
chr11	63714319	rs4980500	T	C	2335.77	.	AC=1;AF=0.500;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	0/1:282,136:0.33:418
chr11	63720086	rs4980513	T	G	5023.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr11	63767186	rs709594	A	G	868.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:101,46:0.31:147
chr11	63767249	rs11600062	C	T	751.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:48,37:0.44:85
chr11	63769144	rs539432	C	G	2216.77	.	AC=1;AF=0.500;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	0/1:230,121:0.34:351
chr11	63883985	rs614397	T	C	21600.77	.	AC=2;AF=1.00;AN=2;DB;DP=834;set=Intersection	GT:AD:AF:DP	1/1:0,825:1.00:825
chr11	63884027	rs614035	C	T	4033.77	.	AC=1;AF=0.500;AN=2;DB;DP=774;set=Intersection	GT:AD:AF:DP	0/1:527,240:0.31:767
chr11	63885287	rs947939	C	T	9094.77	.	AC=1;AF=0.500;AN=2;DB;DP=615;set=Intersection	GT:AD:AF:DP	0/1:194,413:0.68:607
chr11	63885632	rs4379854	A	G	13847.77	.	AC=2;AF=1.00;AN=2;DB;DP=526;set=Intersection	GT:AD:AF:DP	1/1:0,518:1.00:518
chr11	63885704	rs677447	C	T	2730.77	.	AC=1;AF=0.500;AN=2;DB;DP=519;set=Intersection	GT:AD:AF:DP	0/1:350,167:0.32:517
chr11	63918589	rs2282492	T	C	1018.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:24,40:0.62:64
chr11	63964657	rs2236648	C	T	370.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:10,15:0.60:25
chr11	63965534	rs35235491	C	CT	385.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.094;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=0.696;QD=9.89;ReadPosRankSum=-0.091;SOR=0.906;set=HC	GT:AD:AF:DP	0/1:14,25:0.64:39
chr11	63967770	rs11231722	C	G	3408.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:94,150:0.61:244
chr11	63971256	rs148030896	C	CTTTG	878.73	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:13,23:0.64:36
chr11	63978067	rs78038516	C	G	3663.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:84,162:0.66:246
chr11	63986713	rs11603538	C	A	4208.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:107,196:0.65:303
chr11	63987339	rs11231726	C	T	4694.77	.	AC=1;AF=0.500;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	0/1:128,207:0.62:335
chr11	63988199	rs112305883	C	T	1968.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:198,111:0.36:309
chr11	63990996	rs5792315	AC	A	2567.73	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:27,83:0.75:110
chr11	63994692	rs1860368	T	C	2978.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.512;ClippingRankSum=0.000;DB;DP=520;ExcessHet=3.0103;FS=1.880;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.88;ReadPosRankSum=-1.815;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:341,166:0.33:507
chr11	63994696	rs2429456	T	C	17122.77	.	AC=2;AF=1.00;AN=2;DB;DP=528;set=Intersection	GT:AD:AF:DP	1/1:0,517:1.00:517
chr11	63995302	rs2429455	C	G	118.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:20,7:0.26:27
chr11	63997329	rs633561	A	G	6861.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.85;SOR=1.216;set=HC	GT:AD:AF:DP	1/1:0,153:1.00:153
chr11	63997338	rs633557	T	C	7298.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.19;SOR=1.262;set=HC	GT:AD:AF:DP	1/1:0,169:1.00:169
chr11	63997566	rs10708923	GA	G	321.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.614;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=9.413;MLEAC=1;MLEAF=0.500;MQ=60.39;MQRankSum=3.571;QD=2.82;ReadPosRankSum=-1.518;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:68,46:0.40:114
chr11	63997882	rs11311686	AT	A	711.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.137;ClippingRankSum=0.000;DB;DP=217;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.228;QD=3.65;ReadPosRankSum=0.461;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:122,73:0.37:195
chr11	63999240	rs3741404	G	C	423.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:18,16:0.47:34
chr11	63999529	rs3741403	C	T	1399.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:114,72:0.39:186
chr11	64002238	rs7482791	T	C	224.78	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.98;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr11	64003843	rs11603042	G	T	3873.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:69,161:0.70:230
chr11	64004555	.	CAAAGAGAG	C,CAG	1025.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=37;set=Intersection	GT:AF:DP	1/2:0.29,0.68:28
chr11	64004692	rs12366035	C	T	160.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.846;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=14.275;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.77;ReadPosRankSum=0.135;SOR=2.000;set=HC	GT:AD:AF:DP	0/1:182,28:0.13:210
chr11	64011307	rs111240465	C	T	2033.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:164,106:0.39:270
chr11	64011441	rs654573	T	C	8403.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,323:1.00:323
chr11	64012225	rs605187	G	C	2281.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr11	64012910	rs60031276	A	G	374.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:8,18:0.69:26
chr11	64012949	.	TG	T	92	.	AC=1;AF=0.500;AN=2;BRF=0.3;FR=0.5000;HP=13;HapScore=4;MGOF=24;MMLQ=22;MQ=60.0;NF=0;NR=6;PP=92;QD=17.6666666667;SC=CAAAGCGGGGTGGGGGGGGGA;SbPval=1.0;Source=Platypus;TC=8;TCF=0;TCR=8;TR=6;WE=64012957;WS=64012938;set=Platypus	GT:AD:AF:DP	0/1:2,6:0.75:8
chr11	64022459	rs632439	A	G	7353.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr11	64023971	rs7943988	G	A	2929.77	.	AC=1;AF=0.500;AN=2;DB;DP=526;set=Intersection	GT:AD:AF:DP	0/1:355,170:0.32:525
chr11	64024056	rs588177	C	A	11480.77	.	AC=2;AF=1.00;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	1/1:3,424:0.99:427
chr11	64026144	rs2244625	G	A	24889.77	.	AC=2;AF=1.00;AN=2;DB;DP=927;set=Intersection	GT:AD:AF:DP	1/1:0,917:1.00:917
chr11	64026639	rs12146487	G	A	4058.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:86,187:0.68:273
chr11	64026685	rs28395882	C	T	663.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:98,40:0.29:138
chr11	64030944	rs2510067	T	C	3019.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr11	64033555	rs3815362	C	T	1985.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:224,109:0.33:333
chr11	64039175	rs2286615	G	A	2993.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:53,132:0.71:185
chr11	64044284	rs72922077	C	A	270.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:16,13:0.45:29
chr11	64052306	rs652611	T	G	10497.77	.	AC=2;AF=1.00;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	1/1:0,404:1.00:404
chr11	64066859	rs2232417	G	A	4153.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr11	64070940	rs11231746	T	C	1180.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:193,74:0.28:267
chr11	64082437	rs650008	C	T	3381.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr11	64085074	rs550819	T	A	13924.77	.	AC=2;AF=1.00;AN=2;DB;DP=528;set=Intersection	GT:AD:AF:DP	1/1:0,512:1.00:512
chr11	64085148	rs28364831	A	C	818.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:109,50:0.31:159
chr11	64085785	rs7938623	A	G	6316.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr11	64085938	rs7941847	T	C	9969.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	1/1:0,370:1.00:370
chr11	64088435	rs566049	A	G	4410.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr11	64088927	rs78184413	G	C	1569.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:43,70:0.62:113
chr11	64108539	rs66493355	C	T	1904.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:183,101:0.36:284
chr11	64109118	rs647152	T	G	2670.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:61,107:0.64:168
chr11	64109315	.	GGTTGTGGTCTGAGGTCTTGGGCCATCAGTGATGTCACAACCAGATGGCCCAAGACCCCAGACCACAACCCCATGTCTGGT	G	518.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.383;ClippingRankSum=0.000;DP=119;ExcessHet=3.0103;FS=4.750;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.51;ReadPosRankSum=1.297;SOR=1.065;set=HC	GT:AD:AF:DP	0/1:95,20:0.17:115
chr11	64109545	rs148469170	C	T	495.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.317;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=2.456;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.31;ReadPosRankSum=-0.461;SOR=0.938;set=HC	GT:AD:AF:DP	0/1:115,35:0.23:150
chr11	64110348	rs11602301	T	G	372.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.60;QD=26.63;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr11	64110422	rs11601860	A	T	194.03	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:2,9:0.82:11
chr11	64110626	rs77179073	C	T	791.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:18,32:0.64:50
chr11	64110668	rs574835	G	A	1320.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:33,52:0.61:85
chr11	64110683	rs479552	G	C	1954.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:40,75:0.65:115
chr11	64111928	rs685870	T	C	6010.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr11	64116843	rs1318165	A	C	1853.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr11	64117284	rs4930155	G	A	352.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.551;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.05;ReadPosRankSum=1.148;SOR=0.630;set=HC	GT:AD:AF:DP	0/1:63,24:0.28:87
chr11	64118422	rs614047	G	C	1370.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr11	64120435	rs489419	T	C	3302.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr11	64124515	rs612448	T	C	6158.77	.	AC=1;AF=0.500;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	0/1:107,279:0.72:386
chr11	64124823	rs519763	C	T	2652.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:59,120:0.67:179
chr11	64124940	rs600377	T	G	2112.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:67,99:0.60:166
chr11	64124980	rs542907	G	A	2002.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:68,95:0.58:163
chr11	64127744	rs521950	A	G	1493.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:33,59:0.64:92
chr11	64127881	rs564687	T	G	8772.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr11	64128423	rs516124	G	T	248.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:11,11:0.50:22
chr11	64135435	rs508168	G	A	1864.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:31,70:0.69:101
chr11	64135541	rs3217512	GTC	G	13199.73	.	AC=1;AF=0.500;AN=2;DB;DP=519;set=Intersection	GT:AD:AF:DP	0/1:181,331:0.65:512
chr11	64136877	rs11606015	C	G	648.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.900;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.80;ReadPosRankSum=-1.721;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:23,32:0.58:55
chr11	64137875	rs11606081	T	C	2516.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:40,104:0.72:144
chr11	64138805	rs11542299	T	C	5162.77	.	AC=1;AF=0.500;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	0/1:170,250:0.60:420
chr11	64138905	rs17857342	T	G	2676.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:74,117:0.61:191
chr11	64217467	rs76247963	C	G	2196.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:60,93:0.61:153
chr11	64326795	rs2277312	A	G	3510.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:85,160:0.65:245
chr11	64332862	rs71456318	A	C	1062.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:31,49:0.61:80
chr11	64359286	rs3825016	C	T	8739.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;MQ=59.99;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr11	64360274	rs11231825	T	C	15122.77	.	AC=2;AF=1.00;AN=2;DB;DP=589;set=Intersection	GT:AD:AF:DP	1/1:0,586:1.00:586
chr11	64361384	rs2021860	G	T	2916.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:1,102:0.99:103
chr11	64365943	rs1529909	T	C	804.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr11	64367050	rs1705361	A	G	183.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.97;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr11	64367325	rs1630320	A	G	5590.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr11	64387932	rs2277311	G	A	4135.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr11	64418900	rs526338	G	A	12119.77	.	AC=2;AF=1.00;AN=2;DB;DP=442;set=Intersection	GT:AD:AF:DP	1/1:0,438:1.00:438
chr11	64421249	.	G	GT	121.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.815;ClippingRankSum=0.000;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.25;ReadPosRankSum=-1.420;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:39,15:0.28:54
chr11	64465282	rs17189800	C	T	4868.77	.	AC=1;AF=0.500;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	0/1:117,219:0.65:336
chr11	64480308	rs2666560	C	T	2522.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr11	64480641	rs2518907	G	A	3016.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr11	64496587	rs559977	T	C	5020.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr11	64497161	rs534221	C	T	9891.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.89;SOR=1.043;set=HC	GT:AD:AF:DP	1/1:0,382:1.00:382
chr11	64497185	.	CAAAA	C	8646.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.441;ClippingRankSum=0.000;DP=439;ExcessHet=3.0103;FS=0.381;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.87;ReadPosRankSum=3.042;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:155,223:0.59:378
chr11	64497189	rs533515	A	C	2907.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.010;ClippingRankSum=0.000;DB;DP=435;ExcessHet=3.0103;FS=0.373;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.47;ReadPosRankSum=-2.074;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:234,155:0.40:389
chr11	64503179	rs553618	A	G	2641.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr11	64503496	rs556356	A	G	4739.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr11	64503543	rs33956572	CT	C	3763.73	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr11	64507315	rs550930	T	C	6098.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr11	64507680	rs547280	A	C	18799.77	.	AC=2;AF=1.00;AN=2;DB;DP=689;set=Intersection	GT:AD:AF:DP	1/1:1,681:1.00:682
chr11	64507799	rs546323	G	C	10308.77	.	AC=2;AF=1.00;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	1/1:1,370:1.00:371
chr11	64510898	rs2904961	C	T	2466.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr11	64511050	rs2073797	G	C	4051.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr11	64520942	rs2959652	G	T	2792.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.11;SOR=2.235;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr11	64521142	.	C	T	1129.77	.	AC=1;AF=0.500;AN=2;DP=149;set=Intersection	GT:AD:AF:DP	0/1:86,58:0.40:144
chr11	64522066	rs625172	A	G	1396.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr11	64525216	rs589691	C	T	9328.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chr11	64525464	rs490980	C	T	4386.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr11	64525644	rs489192	G	T	1136.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr11	64535357	rs575375	T	C	9684.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	1/1:0,354:1.00:354
chr11	64535849	rs561158	C	T	2072.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr11	64536866	rs484886	T	C	10695.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	1/1:0,374:1.00:374
chr11	64563934	rs483544	A	G	14859.77	.	AC=2;AF=1.00;AN=2;DB;DP=561;set=Intersection	GT:AD:AF:DP	1/1:3,547:0.99:550
chr11	64567047	rs3832792	GCA	G	19451.73	.	AC=2;AF=1.00;AN=2;DB;DP=775;set=Intersection	GT:AD:AF:DP	1/1:2,720:1.00:722
chr11	64572018	rs2959656	T	C	8418.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr11	64572557	rs540012	A	G	5377.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr11	64572602	rs2071313	G	A	4412.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr11	64591972	rs10792447	T	C	1943.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:209,106:0.34:315
chr11	64594490	rs646709	A	G	1297.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr11	64596916	rs10897529	C	T	847.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:79,41:0.34:120
chr11	64597205	rs7936466	G	T	5303.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:87,217:0.71:304
chr11	64597506	rs3741395	T	C	2970.77	.	AC=1;AF=0.500;AN=2;DB;DP=488;set=Intersection	GT:AD:AF:DP	0/1:315,167:0.35:482
chr11	64597574	rs12790925	G	A	8685.77	.	AC=1;AF=0.500;AN=2;DB;DP=581;set=Intersection	GT:AD:AF:DP	0/1:187,385:0.67:572
chr11	64598944	rs684071	A	G	8532.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr11	64601933	rs7933683	T	C	2428.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:59,102:0.63:161
chr11	64602757	rs561895	T	C	8014.77	.	AC=1;AF=0.500;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	0/1:133,346:0.72:479
chr11	64602782	rs11605623	C	T	2615.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.404;ClippingRankSum=0.000;DB;DP=617;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.26;ReadPosRankSum=0.619;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:444,170:0.28:614
chr11	64603844	rs138577794	A	ACTCACCCAC	1299.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.085;ClippingRankSum=0.000;DB;DP=404;ExcessHet=3.0103;FS=15.101;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=4.321;QD=4.50;ReadPosRankSum=1.270;SOR=1.579;set=HC	GT:AD:AF:DP	0/1:238,51:0.18:289
chr11	64604178	rs2904960	T	C	467.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.96;QD=35.98;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:1,12:0.92:13
chr11	64604182	rs71049666	G	GC	284.27	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.282;ClippingRankSum=-0.000;DB;DP=21;ExcessHet=3.0103;FS=5.229;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-0.000;QD=28.43;ReadPosRankSum=1.645;SOR=1.996;set=HC	GT:AD:AF:DP	0/1:1,9:0.90:10
chr11	64605689	rs541525	A	G	1182.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr11	64606765	rs676977	T	C	4583.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr11	64606910	rs142726755	C	CCTGCTCCCA	865.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.778;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=3.879;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.00;ReadPosRankSum=0.178;SOR=0.547;set=HC	GT:AD:AF:DP	0/1:146,27:0.16:173
chr11	64608282	rs71541906	G	A	783.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.414;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.10;ReadPosRankSum=-0.246;SOR=0.502;set=HC	GT:AD:AF:DP	0/1:7,32:0.82:39
chr11	64621856	rs3897618	A	G	9724.77	.	AC=2;AF=1.00;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	1/1:0,367:1.00:367
chr11	64622869	rs10897533	G	C	4061.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr11	64641773	rs35867760	C	CA	158.14	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.336;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=0.861;QD=5.65;ReadPosRankSum=1.451;SOR=1.058;set=HC	GT:AD:AF:DP	0/1:13,15:0.54:28
chr11	64645871	rs1211284	A	G	12612.77	.	AC=2;AF=1.00;AN=2;DB;DP=473;set=Intersection	GT:AD:AF:DP	1/1:0,467:1.00:467
chr11	64664774	rs658006	C	T	3785.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:2,138:0.99:140
chr11	64669417	rs682673	T	C	6201.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr11	64669854	rs200413907	G	A	337.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:38,19:0.33:57
chr11	64677293	rs656195	G	C	5463.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr11	64678920	rs638583	T	C	531.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	64680407	rs594820	G	C	1128.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr11	64680819	rs618006	G	A	1184.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr11	64695185	.	GA	G	110.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.648;ClippingRankSum=0.000;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.86;ReadPosRankSum=1.070;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:97,32:0.25:129
chr11	64700767	rs675090	G	A	1624.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr11	64702200	rs673995	C	T	15142.77	.	AC=2;AF=1.00;AN=2;DB;DP=570;set=Intersection	GT:AD:AF:DP	1/1:2,566:1.00:568
chr11	64702765	rs2307669	C	CTCTG	2803.73	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr11	64707978	rs586616	A	G	2477.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:1,94:0.99:95
chr11	64713485	rs596321	T	G	1413.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr11	64717801	rs71049671	C	CAA	2018.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.658;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=2.126;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.000;QD=24.03;ReadPosRankSum=1.082;SOR=1.569;set=HC	GT:AD:AF:DP	1/1:6,78:0.93:84
chr11	64718050	rs138174447	TTTTC	T	2500.73	.	AC=2;AF=1.00;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.02;QD=41.00;SOR=4.514;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr11	64721908	rs495330	G	A	1479.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr11	64726701	rs602404	A	C	2424.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr11	64757504	rs574381	G	C	20358.77	.	AC=2;AF=1.00;AN=2;DB;DP=749;set=Intersection	GT:AD:AF:DP	1/1:4,739:0.99:743
chr11	64761779	rs626670	T	C	723.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr11	64761957	rs375591973	C	T	1041.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.851;ClippingRankSum=0.000;DB;DP=267;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.93;ReadPosRankSum=0.585;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:196,69:0.26:265
chr11	64789194	rs664226	T	C	2864.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr11	64794918	rs3832791	T	TG	1284.73	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:26,41:0.61:67
chr11	64799789	rs532373	C	T	1453.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:31,58:0.65:89
chr11	64799894	rs678614	A	C	5141.77	.	AC=1;AF=0.500;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	0/1:117,227:0.66:344
chr11	64799998	rs534236	T	C	6392.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.062;ClippingRankSum=0.000;DB;DP=441;ExcessHet=3.0103;FS=0.552;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.53;ReadPosRankSum=1.592;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:147,293:0.67:440
chr11	64802267	rs6591869	G	A	1910.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:55,77:0.58:132
chr11	64807294	rs653111	G	A	1196.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:31,51:0.62:82
chr11	64808647	rs10160811	A	C	1481.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr11	64808681	rs34998502	AC	A	1858.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr11	64809044	rs3741390	C	T	870.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:89,47:0.35:136
chr11	64809090	rs12271134	T	G	2611.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr11	64809133	rs10792455	T	G	1543.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr11	64809167	rs10792456	A	G	1082.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr11	64809441	rs3862374	C	T	445.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:10,21:0.68:31
chr11	64810771	rs11231929	A	G	957.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.496;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=2.915;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.41;ReadPosRankSum=-0.169;SOR=1.261;set=HC	GT:AD:AF:DP	0/1:17,38:0.69:55
chr11	64820654	rs477539	C	T	394.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:13,17:0.57:30
chr11	64833935	rs548150	G	A	2343.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:68,101:0.60:169
chr11	64834432	rs573957	T	A	2314.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr11	64835306	rs492799	C	A	1051.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:38,44:0.54:82
chr11	64835415	rs3850946	C	G	656.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:75,36:0.32:111
chr11	64835463	rs149675910	ACT	A	685.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.232;ClippingRankSum=0.000;DB;DP=252;ExcessHet=3.0103;FS=2.306;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.94;ReadPosRankSum=-0.398;SOR=0.491;set=HC	GT:AD:AF:DP	0/1:186,47:0.20:233
chr11	64836207	rs12362669	C	G	766.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:37,35:0.49:72
chr11	64847363	rs372909961	CT	C	106.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.072;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=5.441;MLEAC=1;MLEAF=0.500;MQ=60.34;MQRankSum=0.791;QD=5.62;ReadPosRankSum=0.708;SOR=3.442;set=HC	GT:AD:AF:DP	0/1:9,10:0.53:19
chr11	64851305	rs947799	C	T	6916.77	.	AC=1;AF=0.500;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	0/1:166,307:0.65:473
chr11	64851453	rs35819335	CT	C	24853.73	.	AC=2;AF=1.00;AN=2;DB;DP=683;set=Intersection	GT:AD:AF:DP	1/1:0,667:1.00:667
chr11	64856500	rs525781	A	G	2524.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr11	64878661	rs625004	T	C	17231.77	.	AC=2;AF=1.00;AN=2;DB;DP=641;set=Intersection	GT:AD:AF:DP	1/1:0,628:1.00:628
chr11	64880090	rs4930284	G	C	2260.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr11	64883864	rs1706937	A	G	8018.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:1,288:1.00:289
chr11	64884052	rs1546532	G	A	8450.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:1,295:1.00:296
chr11	64889416	rs769440	G	C	1142.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr11	64897453	rs1206196	C	T	6938.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr11	64898357	rs11369296	G	GC	16421.73	.	AC=2;AF=1.00;AN=2;DB;DP=470;set=Intersection	GT:AD:AF:DP	1/1:0,462:1.00:462
chr11	64901141	rs117352691	C	G	871.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:104,49:0.32:153
chr11	64937683	rs17743381	C	T	285.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:54,20:0.27:74
chr11	64948277	rs3953797	A	C	6543.77	.	AC=1;AF=0.500;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	0/1:136,273:0.67:409
chr11	64948555	rs12422027	A	G	2125.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:42,76:0.64:118
chr11	64950970	rs17583	C	T	5799.77	.	AC=1;AF=0.500;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	0/1:138,264:0.66:402
chr11	64972286	rs10895991	G	C	1639.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:187,89:0.32:276
chr11	64972354	rs2271450	A	T	1003.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:111,57:0.34:168
chr11	64977644	rs625750	C	T	3102.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:1,102:0.99:103
chr11	64977937	rs542380	A	G	13778.77	.	AC=2;AF=1.00;AN=2;DB;DP=489;set=Intersection	GT:AD:AF:DP	1/1:0,483:1.00:483
chr11	64981472	rs239258	G	C	18152.77	.	AC=2;AF=1.00;AN=2;DB;DP=690;set=Intersection	GT:AD:AF:DP	1/1:5,678:0.99:683
chr11	64981853	rs239259	G	T	3706.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr11	64990041	rs514076	G	C	4180.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.29;SOR=0.811;set=HC	GT:AD:AF:DP	1/1:0,159:1.00:159
chr11	64993195	rs10633296	C	CAGTA	5359.73	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr11	65000478	rs2904978	C	T	1622.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr11	65000719	rs2904979	C	T	10088.77	.	AC=2;AF=1.00;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	1/1:0,377:1.00:377
chr11	65003812	rs625427	T	C	2296.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr11	65004301	rs2904982	G	T	17078.77	.	AC=2;AF=1.00;AN=2;DB;DP=533;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.35;SOR=0.716;set=HC	GT:AD:AF:DP	1/1:0,528:1.00:528
chr11	65004301	.	GTCCTGACC	TTCCTGACC,TTCCTGACT	2962	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.48;FR=0.5000,0.5000;HP=1;HapScore=1;MGOF=1;MMLQ=26;MQ=60.0;NF=165,46;NR=168,48;PP=2962,1408;QD=20;SC=GGCCGTCTGCGTCCTGACCGA;SbPval=0.53;Source=Platypus;TC=337;TCF=165;TCR=172;TR=333,94;WE=65004317;WS=65004291;set=Platypus	GT:AF:DP	0/1:0.99:337
chr11	65004309	rs564476	C	T	2859.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.128;ClippingRankSum=0.000;DB;DP=518;ExcessHet=3.0103;FS=0.556;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.55;ReadPosRankSum=0.867;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:352,163:0.32:515
chr11	65064419	.	C	CAAA	53.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.880;ClippingRankSum=0.000;DP=53;ExcessHet=3.0103;FS=2.466;MLEAC=1;MLEAF=0.500;MQ=59.83;MQRankSum=0.447;QD=1.31;ReadPosRankSum=0.284;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:36,5:0.12:41
chr11	65118971	rs620888	T	C	1440.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr11	65143701	rs80042162	CT	C	2657.73	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:34,76:0.69:110
chr11	65144075	rs624307	T	C	18326.77	.	AC=2;AF=1.00;AN=2;DB;DP=693;set=Intersection	GT:AD:AF:DP	1/1:0,686:1.00:686
chr11	65147294	rs547221	G	A	5882.77	.	AC=1;AF=0.500;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	0/1:136,270:0.67:406
chr11	65147862	rs573864	C	G	1396.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr11	65157094	rs739389	C	T	523.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:63,29:0.32:92
chr11	65161129	rs2073800	C	T	5447.77	.	AC=1;AF=0.500;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	0/1:148,254:0.63:402
chr11	65161328	rs4930154	T	C	446.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:41,19:0.32:60
chr11	65164114	rs7940559	G	A	314.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:28,17:0.38:45
chr11	65178620	rs2957274	G	A	1198.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr11	65211734	.	CTGTGTGTGTGTG	C	1162.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.318;ClippingRankSum=0.000;DP=51;ExcessHet=3.0103;FS=16.588;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.81;ReadPosRankSum=0.425;SOR=4.168;set=HC	GT:AD:AF:DP	0/1:5,34:0.87:39
chr11	65265998	rs145862195	T	C	1359.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.046;ClippingRankSum=0.000;DB;DP=272;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.000;QD=5.13;ReadPosRankSum=-0.753;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:187,78:0.29:265
chr11	65271779	rs36002528	CT	C	462.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.526;ClippingRankSum=0.000;DB;DP=322;ExcessHet=3.0103;FS=0.599;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.60;ReadPosRankSum=1.110;SOR=0.618;set=HC	GT:AD:AF:DP	0/1:211,79:0.27:290
chr11	65271892	rs149582996	A	G	3274.77	.	AC=1;AF=0.500;AN=2;DB;DP=575;set=Intersection	GT:AD:AF:DP	0/1:372,193:0.34:565
chr11	65273802	.	G	A	88.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.591;ClippingRankSum=0.000;DP=89;ExcessHet=3.0103;FS=2.439;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.00;ReadPosRankSum=-1.602;SOR=0.393;set=HC	GT:AD:AF:DP	0/1:74,15:0.17:89
chr11	65314778	rs186511849	G	T	1021.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.526;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=6.618;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.20;ReadPosRankSum=0.214;SOR=0.109;set=HC	GT:AD:AF:DP	0/1:14,25:0.64:39
chr11	65314778	.	GCA	TCG	746	.	AC=1;AF=0.500;AN=2;BRF=0.4;FR=0.5000;HP=3;HapScore=3;MGOF=7;MMLQ=24;MQ=59.48;NF=13;NR=7;PP=746;QD=39.9733937431;SC=TCTCACCACCGCACTCCAGCC;SbPval=0.13;Source=Platypus;TC=33;TCF=26;TCR=7;TR=20;WE=65314788;WS=65314769;set=Platypus	GT:AD:AF:DP	0/1:13,20:0.61:33
chr11	65314780	rs190969559	A	G	1021.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.869;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=6.527;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.33;ReadPosRankSum=0.054;SOR=0.116;set=HC	GT:AD:AF:DP	0/1:15,27:0.64:42
chr11	65320780	rs4244811	G	A	3602.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr11	65325325	.	CCAG	C	375.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.801;ClippingRankSum=0.000;DP=275;ExcessHet=3.0103;FS=2.383;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.04;ReadPosRankSum=1.174;SOR=1.119;set=HC	GT:AD:AF:DP	0/1:161,23:0.12:184
chr11	65347297	rs5792362	C	CA	273.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.189;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=4.155;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=0.000;QD=7.40;ReadPosRankSum=-2.131;SOR=1.743;set=HC	GT:AD:AF:DP	0/1:15,22:0.59:37
chr11	65347636	rs1194100	G	C	6246.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr11	65349063	rs3741380	G	A	1844.77	.	AC=1;AF=0.500;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	0/1:224,110:0.33:334
chr11	65349756	rs6591182	T	G	2348.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr11	65349849	rs1194099	A	T	2958.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr11	65357697	rs1151503	A	G	2881.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr11	65359625	rs4261292	C	G	4489.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr11	65373621	rs1151527	A	G	2184.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr11	65380916	rs2004649	G	A	4309.77	.	AC=1;AF=0.500;AN=2;DB;DP=766;set=Intersection	GT:AD:AF:DP	0/1:517,241:0.32:758
chr11	65383896	rs7947140	G	C	17088.77	.	AC=2;AF=1.00;AN=2;DB;DP=634;set=Intersection	GT:AD:AF:DP	1/1:0,626:1.00:626
chr11	65384727	rs12790427	C	T	3206.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:60,134:0.69:194
chr11	65385606	rs1151489	A	G	8548.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr11	65387378	rs61744384	T	A	2311.77	.	AC=1;AF=0.500;AN=2;DB;DP=563;set=Intersection	GT:AD:AF:DP	0/1:401,153:0.28:554
chr11	65389631	rs1144789	A	G	723.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:13,32:0.71:45
chr11	65389890	rs11227241	G	C	1092.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:108,62:0.36:170
chr11	65391317	rs12801636	G	A	4605.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:84,197:0.70:281
chr11	65394322	rs10896024	A	G	520.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:76,33:0.30:109
chr11	65408937	rs3741378	C	T	3004.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:67,120:0.64:187
chr11	65412467	rs2306364	G	A	1800.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:201,102:0.34:303
chr11	65415028	rs4930157	T	G	4903.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr11	65417434	rs746429	G	A	3770.77	.	AC=1;AF=0.500;AN=2;DB;DP=635;set=Intersection	GT:AD:AF:DP	0/1:422,206:0.33:628
chr11	65422591	rs7119750	C	T	1422.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:24,60:0.71:84
chr11	65423082	rs1144792	G	A	3292.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr11	65427346	rs2306365	G	A	686.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:22,30:0.58:52
chr11	65480090	rs2236682	G	T	942.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:91,51:0.36:142
chr11	65480768	rs4244812	A	G	3822.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:2,151:0.99:153
chr11	65480791	rs551115	A	G	6294.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr11	65481166	rs1151500	T	C	10836.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.843;ClippingRankSum=0.000;DB;DP=416;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.89;ReadPosRankSum=1.795;SOR=0.871;set=HC	GT:AD:AF:DP	1/1:2,401:1.00:403
chr11	65481465	rs487264	T	G	1035.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr11	65484569	rs563427	A	G	2076.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr11	65546857	rs610037	A	C	4420.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:90,183:0.67:273
chr11	65547333	rs12146493	G	A	8783.77	.	AC=1;AF=0.500;AN=2;DB;DP=653;set=Intersection	GT:AD:AF:DP	0/1:249,402:0.62:651
chr11	65547455	rs12362011	C	A	4443.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:115,193:0.63:308
chr11	65554680	rs10896044	C	G	1211.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr11	65561468	rs644740	C	T	1285.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:21,49:0.70:70
chr11	65561805	rs56019505	T	G	3151.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:58,132:0.69:190
chr11	65562257	rs2276133	G	A	2982.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:48,116:0.71:164
chr11	65601644	rs150700040	GGTGGTGTGTGTGTGTCTGTGTGTGT	G	1574.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.676;ClippingRankSum=0.000;DB;DP=454;ExcessHet=3.0103;FS=0.608;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=2.807;QD=3.86;ReadPosRankSum=0.605;SOR=0.820;set=HC	GT:AD:AF:DP	0/1:304,104:0.25:408
chr11	65617113	rs11327250	AG	A	9177.73	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr11	65618053	rs117613663	C	T	364.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:63,23:0.27:86
chr11	65623347	rs652021	G	A	5285.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr11	65623519	rs4621	G	A	17614.77	.	AC=2;AF=1.00;AN=2;DB;DP=658;set=Intersection	GT:AD:AF:DP	1/1:0,654:1.00:654
chr11	65624934	rs7125986	A	C	5709.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr11	65628334	rs13817	G	A	6361.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:1,233:1.00:234
chr11	65629932	rs659857	T	C	7784.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.74;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,174:1.00:174
chr11	65629932	.	TCG	CCC	2947	.	AC=2;AF=1.00;AN=2;BRF=0.38;FR=1.0000;HP=2;HapScore=1;MGOF=2;MMLQ=28;MQ=60.0;NF=76;NR=45;PP=2947;QD=20;SC=CTGGGAGTGCTCGACCCTGGC;SbPval=0.68;Source=Platypus;TC=129;TCF=77;TCR=52;TR=121;WE=65629942;WS=65629922;set=Platypus	GT:AD:AF:DP	1/1:8,121:0.94:129
chr11	65629934	rs545500	G	C	7784.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.48;SOR=0.988;set=HC	GT:AD:AF:DP	1/1:0,175:1.00:175
chr11	65630101	rs633877	G	C	5472.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.10;SOR=0.936;set=HC	GT:AD:AF:DP	1/1:0,218:1.00:218
chr11	65630698	rs538394	T	G	2110.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr11	65631167	rs648732	C	T	11902.77	.	AC=2;AF=1.00;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	1/1:2,418:1.00:420
chr11	65631879	rs630758	C	A	3184.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.50;SOR=2.049;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr11	65631879	.	CCG	ACA	2562	.	AC=2;AF=1.00;AN=2;BRF=0.28;FR=1.0000;HP=2;HapScore=1;MGOF=11;MMLQ=28;MQ=60.0;NF=44;NR=13;PP=2562;QD=20;SC=GAACAGGGTCCCGGCACCATT;SbPval=0.7;Source=Platypus;TC=61;TCF=45;TCR=16;TR=57;WE=65631889;WS=65631869;set=Platypus	GT:AD:AF:DP	1/1:4,57:0.93:61
chr11	65631881	rs630755	G	A	3184.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.23;SOR=2.115;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr11	65631973	rs630303	G	A	6163.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:2,226:0.99:228
chr11	65632262	rs558114	G	T	14486.77	.	AC=2;AF=1.00;AN=2;DB;DP=552;set=Intersection	GT:AD:AF:DP	1/1:0,535:1.00:535
chr11	65635559	rs594689	G	A	361.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:43,18:0.30:61
chr11	65636053	rs601314	T	C	5541.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:1,206:1.00:207
chr11	65637273	rs501630	A	G	450.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:62,28:0.31:90
chr11	65637984	rs630394	C	G	1152.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:139,61:0.30:200
chr11	65638719	rs633800	G	A	1652.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:175,95:0.35:270
chr11	65639374	rs2234458	C	T	1164.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:99,61:0.38:160
chr11	65647260	rs658524	A	G	2230.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr11	65647796	.	C	CT	252.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.729;ClippingRankSum=0.000;DP=320;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=0.000;QD=0.99;ReadPosRankSum=-0.456;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:203,53:0.21:256
chr11	65649774	rs604630	A	G	10561.77	.	AC=2;AF=1.00;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	1/1:0,397:1.00:397
chr11	65649984	rs687672	T	C	11857.77	.	AC=2;AF=1.00;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	1/1:0,444:1.00:444
chr11	65651830	rs658938	A	G	2677.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr11	65655259	rs2308217	G	GCC	12801.73	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr11	65664346	rs637571	T	C	1474.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:40,60:0.60:100
chr11	65667796	rs1058068	G	A	1049.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:12,47:0.80:59
chr11	65684929	rs9667389	C	T	1990.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr11	65685225	rs7947504	T	C	9597.77	.	AC=2;AF=1.00;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	1/1:0,365:1.00:365
chr11	65713207	rs9795469	T	C	9624.77	.	AC=2;AF=1.00;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	1/1:0,364:1.00:364
chr11	65715413	rs146678542	C	T	542.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:56,26:0.32:82
chr11	65727301	rs491973	A	G	813.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:21,37:0.64:58
chr11	65732651	rs550435	G	A	3386.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:53,141:0.73:194
chr11	65732800	rs552130	T	C	4003.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:75,171:0.70:246
chr11	65733289	rs556643	G	A	4719.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:93,210:0.69:303
chr11	65733393	rs688862	C	T	2469.77	.	AC=1;AF=0.500;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	0/1:276,140:0.34:416
chr11	65734539	rs1151505	C	T	959.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:9,34:0.79:43
chr11	65735174	rs660118	G	C	1416.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:39,67:0.63:106
chr11	65744265	rs2276016	C	T	1030.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.200;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=1.988;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.05;ReadPosRankSum=-1.182;SOR=1.045;set=HC	GT:AD:AF:DP	0/1:34,45:0.57:79
chr11	65744275	rs543952	T	C	2722.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr11	65744421	rs542332	C	T	2202.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:44,97:0.69:141
chr11	65744597	rs7952056	C	T	1003.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:88,56:0.39:144
chr11	65746063	rs145104842	G	A	583.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:35,29:0.45:64
chr11	65746653	rs679581	A	G	1293.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:34,53:0.61:87
chr11	65767153	rs507672	A	G	2207.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr11	65767215	rs506873	G	T	1631.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr11	65767249	rs72930954	C	T	686.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:13,31:0.70:44
chr11	65771050	rs147010511	TCACTGAG	T	1132.73	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:16,29:0.64:45
chr11	65780702	rs9667817	A	G	3187.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr11	65788072	rs3814747	C	T	7991.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr11	65789137	rs34114713	C	G	7883.77	.	AC=1;AF=0.500;AN=2;DB;DP=489;set=Intersection	GT:AD:AF:DP	0/1:139,341:0.71:480
chr11	65790527	rs2845570	G	T	860.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:78,45:0.37:123
chr11	65793454	rs1203998	C	T	2618.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:42,109:0.72:151
chr11	65793797	rs1893316	G	A	3493.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:77,157:0.67:234
chr11	65793874	rs3841469	CA	C	1795.73	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:31,74:0.70:105
chr11	65810209	rs61895584	C	T	4624.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr11	65810749	rs7937692	T	C	8877.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr11	65811208	rs4930170	G	T	690.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:63,36:0.36:99
chr11	65824472	rs547404	C	T	1977.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:32,84:0.72:116
chr11	65825951	rs491618	T	A	682.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:12,30:0.71:42
chr11	65826704	rs1049872	G	A	1738.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:38,78:0.67:116
chr11	65868310	rs475817	T	A	14545.77	.	AC=2;AF=1.00;AN=2;DB;DP=552;set=Intersection	GT:AD:AF:DP	1/1:0,544:1.00:544
chr11	65983522	rs548858	A	G	1277.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr11	65985000	rs557082	A	C	7067.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr11	65997898	rs561948	A	G	714.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr11	66000721	rs76822947	G	A	2401.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:63,93:0.60:156
chr11	66010633	rs524268	T	C	7800.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr11	66029130	rs572827	G	C	170.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr11	66031450	rs525698	T	C	10552.77	.	AC=2;AF=1.00;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	1/1:0,388:1.00:388
chr11	66032712	.	T	TGGGGC	1009.73	.	AC=1;AF=0.500;AN=2;DP=86;set=Intersection	GT:AD:AF:DP	0/1:27,32:0.54:59
chr11	66036293	rs150627444	A	AC,ACC	6749.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=310;set=Intersection	GT:AF:DP	1/2:0.25,0.68:251
chr11	66040053	rs555826	A	G	2228.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr11	66043253	rs55931871	T	C	2192.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr11	66050948	rs3016315	C	T	3172.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr11	66054823	rs510398	C	T	4645.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr11	66059782	rs6591210	T	C	284.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr11	66100152	rs1784030	T	C	5005.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr11	66100695	rs58221849	T	A	122.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:9,7:0.44:16
chr11	66101974	rs3016317	C	T	1213.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.417;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=4.194;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.19;ReadPosRankSum=2.256;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:155,41:0.21:196
chr11	66101978	rs10896110	G	A	1304.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.134;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=2.973;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.36;ReadPosRankSum=1.478;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:159,46:0.22:205
chr11	66102088	rs3814740	G	A	3224.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:36,139:0.79:175
chr11	66102769	rs7950463	A	C	2470.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:68,113:0.62:181
chr11	66102807	rs10444359	G	A	1110.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:118,62:0.34:180
chr11	66103046	rs3016763	C	T	6701.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr11	66104057	rs3016316	T	A	796.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:70,41:0.37:111
chr11	66104993	rs3116068	C	T	1143.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:154,67:0.30:221
chr11	66106261	rs143489952	G	A	3233.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:67,143:0.68:210
chr11	66107674	rs1784035	A	G	5661.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr11	66108894	rs2236679	G	C	18887.77	.	AC=2;AF=1.00;AN=2;DB;DP=724;set=Intersection	GT:AD:AF:DP	1/1:0,720:1.00:720
chr11	66109779	rs1784037	AT	GA	4779.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr11	66114900	rs11537930	C	T	4283.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:79,187:0.70:266
chr11	66130736	rs1039593	A	G	573.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr11	66131906	rs7125100	A	G	2090.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr11	66133311	rs4930358	T	C	3115.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr11	66134085	rs8187658	C	T	174.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:25,10:0.29:35
chr11	66135898	rs2292123	T	C	4193.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr11	66138894	rs7946434	G	C	3366.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr11	66204461	.	T	C	3270.77	.	AC=1;AF=0.500;AN=2;DP=203;set=Intersection	GT:AD:AF:DP	0/1:63,134:0.68:197
chr11	66206169	rs11110	C	T	1888.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr11	66262806	rs10791878	T	C	3503.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr11	66272142	rs1671063	A	G	5456.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr11	66278059	rs1791688	C	G	1905.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr11	66285268	rs10736656	G	A	794.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr11	66299515	rs8432	A	G	2422.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:2,92:0.98:94
chr11	66318972	rs490998	G	A	3678.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr11	66324583	rs678397	T	C	1869.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:51,85:0.62:136
chr11	66324762	rs677488	C	T	784.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:25,42:0.63:67
chr11	66327673	rs1671064	G	A	6334.77	.	AC=1;AF=0.500;AN=2;DB;DP=456;MQ=60.02;set=Intersection	GT:AD:AF:DP	0/1:156,294:0.65:450
chr11	66328095	rs1815739	T	C	4585.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:85,205:0.71:290
chr11	66328719	rs618838	T	C	621.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:12,27:0.69:39
chr11	66328877	rs607736	G	A	1831.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:37,75:0.67:112
chr11	66329732	rs540874	A	G	1417.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:35,60:0.63:95
chr11	66331458	rs572846	A	G	1652.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:36,75:0.68:111
chr11	66333598	rs545009	C	T	8035.77	.	AC=1;AF=0.500;AN=2;DB;DP=508;set=Intersection	GT:AD:AF:DP	0/1:157,350:0.69:507
chr11	66335308	rs2242663	T	C	3428.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:74,139:0.65:213
chr11	66335548	rs1127894	A	G	3685.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:96,160:0.62:256
chr11	66335832	rs1044522	G	A	142.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.045;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.52;ReadPosRankSum=-0.000;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:7,8:0.53:15
chr11	66358126	rs486584	C	T	1555.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:171,86:0.33:257
chr11	66358274	rs62000969	A	C	1464.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:178,82:0.32:260
chr11	66406070	rs670900	A	C	6867.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr11	66410771	.	CT	C	64.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.333;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=5.760;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.18;ReadPosRankSum=0.228;SOR=0.100;set=HC	GT:AD:AF:DP	0/1:41,14:0.25:55
chr11	66417104	.	A	G	1634.77	.	AC=1;AF=0.500;AN=2;DP=256;set=Intersection	GT:AD:AF:DP	0/1:162,87:0.35:249
chr11	66456387	rs2276138	T	C	931.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:148,56:0.27:204
chr11	66458696	rs12804382	C	T	379.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:58,23:0.28:81
chr11	66469032	rs532439	T	C	2075.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:191,111:0.37:302
chr11	66472274	rs4930388	T	C	6002.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr11	66481264	rs615536	C	T	1645.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr11	66483265	rs12805133	A	G	1634.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:170,87:0.34:257
chr11	66512290	.	G	GGGC	594.73	.	AC=1;AF=0.500;AN=2;DP=121;set=Intersection	GT:AD:AF:DP	0/1:77,22:0.22:99
chr11	66581543	rs144880764	TGAAAG	T	418.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.507;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=7.028;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.22;ReadPosRankSum=-0.328;SOR=0.103;set=HC	GT:AD:AF:DP	0/1:44,14:0.24:58
chr11	66583759	rs7930203	A	G	437.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:8,17:0.68:25
chr11	66583779	rs543191	T	G	357.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:7,13:0.65:20
chr11	66610645	rs7570	G	C	1802.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:52,87:0.63:139
chr11	66612684	.	G	A	2115.77	.	AC=1;AF=0.500;AN=2;DP=165;set=Intersection	GT:AD:AF:DP	0/1:66,98:0.60:164
chr11	66617790	rs2229745	G	A	6336.77	.	AC=1;AF=0.500;AN=2;DB;DP=444;set=Intersection	GT:AD:AF:DP	0/1:151,283:0.65:434
chr11	66626234	rs3741194	T	C	3049.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:101,141:0.58:242
chr11	66812338	rs11227668	A	G	2937.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr11	66833265	rs12803688	G	A	1202.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:118,61:0.34:179
chr11	66837965	rs4930409	T	C	8486.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:0,323:1.00:323
chr11	66995603	rs3741189	T	C	9555.77	.	AC=2;AF=1.00;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	1/1:0,350:1.00:350
chr11	67017445	rs34463980	C	CA	4375.73	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr11	67034266	rs2228418	C	A	4058.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr11	67050292	rs2071007	G	A	14082.77	.	AC=2;AF=1.00;AN=2;DB;DP=515;set=Intersection	GT:AD:AF:DP	1/1:1,508:1.00:509
chr11	67052466	rs10896164	G	A	8386.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr11	67057092	rs368498130	GC	G	248.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:1,12:0.92:13
chr11	67057104	rs11227758	C	G	869.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.621;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=29.99;ReadPosRankSum=-0.060;SOR=0.446;set=HC	GT:AD:AF:DP	1/1:1,28:0.97:29
chr11	67068859	rs2298815	T	C	13487.77	.	AC=2;AF=1.00;AN=2;DB;DP=498;set=Intersection	GT:AD:AF:DP	1/1:0,493:1.00:493
chr11	67071584	rs4244822	C	G	6144.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr11	67076810	rs3737460	T	G	6619.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr11	67141148	.	AT	A	316.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.243;ClippingRankSum=0.000;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.96;ReadPosRankSum=0.351;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:70,37:0.35:107
chr11	67141184	rs35544864	C	CT	71.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.920;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=1.319;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.43;ReadPosRankSum=-2.291;SOR=0.947;set=HC	GT:AD:AF:DP	0/1:38,12:0.24:50
chr11	67159602	rs11575914	C	A	3373.77	.	AC=1;AF=0.500;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	0/1:241,171:0.42:412
chr11	67177278	rs7122299	G	A	7816.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr11	67192332	.	CCA	C	186.73	.	AC=1;AF=0.500;AN=2;DP=47;set=Intersection	GT:AD:AF:DP	0/1:35,11:0.24:46
chr11	67192555	rs1626067	G	A	1605.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.148;ClippingRankSum=0.000;DB;DP=366;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.40;ReadPosRankSum=-1.320;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:265,100:0.27:365
chr11	67196237	rs1476792	T	C	1268.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:91,57:0.39:148
chr11	67196544	rs917570	C	G	1875.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:222,102:0.31:324
chr11	67199706	rs1638588	C	A	970.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:102,53:0.34:155
chr11	67200819	rs4930427	C	T	2311.77	.	AC=1;AF=0.500;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	0/1:306,142:0.32:448
chr11	67201008	rs1790753	C	T	490.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.079;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=1.047;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.39;ReadPosRankSum=1.038;SOR=0.820;set=HC	GT:AD:AF:DP	0/1:64,27:0.30:91
chr11	67202044	rs1790752	G	A	1767.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:220,102:0.32:322
chr11	67202156	rs13859	C	T	554.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:63,31:0.33:94
chr11	67205978	rs872375	G	A	2660.77	.	AC=1;AF=0.500;AN=2;DB;DP=521;set=Intersection	GT:AD:AF:DP	0/1:358,155:0.30:513
chr11	67207426	rs2302264	G	A	484.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:38,23:0.38:61
chr11	67223920	rs1638564	CA	GC	2488.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.208;ClippingRankSum=0.000;DB;DP=273;ExcessHet=3.0103;FS=5.756;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.39;ReadPosRankSum=-0.248;SOR=1.058;set=HC	GT:AD:AF:DP	0/1:190,75:0.28:265
chr11	67224988	rs17501521	C	T	1422.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:125,75:0.38:200
chr11	67226097	rs72934713	C	T	2498.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.864;ClippingRankSum=0.000;DB;DP=632;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.99;ReadPosRankSum=0.213;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:464,163:0.26:627
chr11	67257037	rs4084113	C	T	3116.77	.	AC=1;AF=0.500;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	0/1:247,154:0.38:401
chr11	67257273	rs611697	G	T	2654.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr11	67257823	rs641081	C	A	10335.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	1/1:0,382:1.00:382
chr11	67258391	rs4930199	A	G	6717.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr11	67262224	rs149141351	G	A	354.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:34,20:0.37:54
chr11	67262264	.	T	TGAGTGGGCGA	1287	.	AC=2;AF=1.00;AN=2;BRF=0.46;FR=1.0000;HP=3;HapScore=1;MGOF=25;MMLQ=24;MQ=60.97;NF=39;NR=11;PP=1287;QD=26.1;SC=GCCTCTCTGGTGAGTGGGCGA;SbPval=0.86;Source=Platypus;TC=66;TCF=46;TCR=20;TR=50;WE=67262272;WS=67262254;set=Platypus	GT:AD:AF:DP	1/1:16,50:0.76:66
chr11	67262282	rs202207490	C	CGA	5165.73	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr11	67262289	.	GC	AC	2976	.	AC=1;AF=0.500;AN=2;BRF=0.48;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=8;MMLQ=24;MQ=60.46;NF=35,96;NR=11,52;PP=2976,1023;QD=20;SC=GGGCGAGTGGGCGAGGGGGCG;SbPval=0.99;Source=Platypus;TC=138;TCF=76;TCR=62;TR=46,148;WE=67262297;WS=67262272;set=Platypus	GT:AD:AF:DP	0/1:26,148:0.85:174
chr11	67262289	.	GC	GCGAGAGGAC,GCGAGTGGAC	5419.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=184;set=Intersection	GT:AF:DP	1/2:0.30,0.69:169
chr11	67263767	rs618633	A	G	2123.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr11	67264679	rs2276120	C	T	735.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:100,45:0.31:145
chr11	67267043	.	T	TCCAA	713	.	AC=1;AF=0.500;AN=2;BRF=0.46;FR=0.5002;HP=2;HapScore=1;MGOF=41;MMLQ=25;MQ=65.03;NF=14;NR=4;PP=713;QD=39.9444444444;SC=CATCCATCCATCCATCCATCC;SbPval=0.76;Source=Platypus;TC=25;TCF=18;TCR=7;TR=18;WE=67267051;WS=67267033;set=Platypus	GT:AD:AF:DP	1/0:7,18:0.72:25
chr11	67288594	rs2276118	C	T	6490.77	.	AC=1;AF=0.500;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	0/1:127,281:0.69:408
chr11	67290204	rs372655272	C	T	177.89	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:1,8:0.89:9
chr11	67351529	rs145589007	A	AG	1884.73	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:40,45:0.53:85
chr11	67351531	rs1079719	G	A	1548.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.133;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=7.613;MLEAC=1;MLEAF=0.500;MQ=60.46;MQRankSum=-1.834;QD=16.65;ReadPosRankSum=-0.583;SOR=0.236;set=HC	GT:AD:AF:DP	0/1:51,42:0.45:93
chr11	67351540	rs1871041	A	G	4670.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr11	67351585	rs4147581	C	G	2889.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.839;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=1.732;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=1.583;QD=13.57;ReadPosRankSum=-0.187;SOR=0.833;set=HC	GT:AD:AF:DP	0/1:81,132:0.62:213
chr11	67351774	rs2370143	C	T	497.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:65,28:0.30:93
chr11	67352256	rs762803	C	A	1631.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:224,98:0.30:322
chr11	67375162	rs1382089	T	C	957.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr11	67376887	rs72932599	G	C	409.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:52,22:0.30:74
chr11	67399735	rs2514021	T	C	11283.77	.	AC=2;AF=1.00;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	1/1:0,413:1.00:413
chr11	67399970	rs3765088	C	T	4632.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr11	67407146	rs2447591	T	C	870.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr11	67412203	rs143278298	C	CCA	1277.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.037;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.963;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=0.761;QD=15.77;ReadPosRankSum=2.124;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:29,52:0.64:81
chr11	67414169	rs369498479	GGGAAGCA	G	2413.73	.	AC=1;AF=0.500;AN=2;DB;DP=92;MQ=60.12;set=Intersection	GT:AD:AF:DP	0/1:30,61:0.67:91
chr11	67414492	rs948445	C	T	3429.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr11	67430589	rs78402723	A	G	3100.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr11	67430762	rs1551886	T	C	8627.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:0,327:1.00:327
chr11	67431038	rs1979375	G	A	3825.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr11	67431110	rs1979376	G	A	6569.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr11	67432804	rs2447571	T	C	11864.77	.	AC=2;AF=1.00;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	1/1:0,443:1.00:443
chr11	67432854	rs6591270	T	C	9388.77	.	AC=2;AF=1.00;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	1/1:0,354:1.00:354
chr11	67433708	rs5792424	C	CG	8502.73	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:2,263:0.99:265
chr11	67433758	rs1551887	G	A	8388.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr11	67433869	rs1551888	C	T	6650.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr11	67434416	rs4646823	C	A	7641.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr11	67564034	rs79787139	A	G	286.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.95;QD=26.07;SOR=4.977;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr11	67564056	rs74682508	T	A	675.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	67564068	rs77439896	C	A	1035.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr11	67564135	rs77521350	G	C	3425.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:2,132:0.99:134
chr11	67564162	rs75324740	A	G	1244.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:133,74:0.36:207
chr11	67564197	rs72657419	T	C	5990.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr11	67564238	rs77785393	C	T	8299.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.96;QD=43.91;SOR=0.964;set=HC	GT:AD:AF:DP	1/1:0,189:1.00:189
chr11	67564241	rs80309804	C	T	8217.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.93;QD=45.40;SOR=0.977;set=HC	GT:AD:AF:DP	1/1:0,181:1.00:181
chr11	67765163	rs5792426	A	AG	6232.73	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr11	67786064	rs11433668	A	AC	4505.73	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr11	67787366	rs4646811	CCT	C	59.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.281;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=4.037;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.07;ReadPosRankSum=0.099;SOR=0.202;set=HC	GT:AD:AF:DP	0/1:49,7:0.12:56
chr11	67789293	rs58160034	G	GC	16329.73	.	AC=2;AF=1.00;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	1/1:0,438:1.00:438
chr11	67795378	rs11436139	G	GC	14093.73	.	AC=2;AF=1.00;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	1/1:0,402:1.00:402
chr11	67799584	rs117961226	C	T	452.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:12,19:0.61:31
chr11	67799731	rs3133266	C	G	3656.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr11	67800494	rs3115545	T	G	7620.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr11	67801282	rs3133267	C	T	1482.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr11	67801517	rs3115546	G	T	10141.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	1/1:0,377:1.00:377
chr11	67804156	rs3133269	C	T	702.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr11	67814473	rs5792432	C	CT	159.76	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.172;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=6.193;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.66;ReadPosRankSum=0.739;SOR=0.073;set=HC	GT:AD:AF:DP	0/1:11,13:0.54:24
chr11	67814979	rs2471829	G	C	13298.77	.	AC=2;AF=1.00;AN=2;DB;DP=475;set=Intersection	GT:AD:AF:DP	1/1:1,468:1.00:469
chr11	67816583	rs61730880	C	T	3601.77	.	AC=1;AF=0.500;AN=2;DB;DP=620;set=Intersection	GT:AD:AF:DP	0/1:414,202:0.33:616
chr11	67829386	rs200958186	G	GA	177.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.020;ClippingRankSum=0.000;DB;DP=279;ExcessHet=3.0103;FS=0.629;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=4.410;QD=0.71;ReadPosRankSum=0.881;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:206,43:0.17:249
chr11	67842369	rs2512611	C	T	1141.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr11	67888793	.	G	GCTGCGGCGA	773.73	.	AC=2;AF=1.00;AN=2;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr11	67933642	rs1114399	C	A	336.78	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:2,13:0.87:15
chr11	67941390	rs3832715	G	GA	2195.73	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:8,105:0.93:113
chr11	67957518	rs2512606	A	T	10189.77	.	AC=2;AF=1.00;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	1/1:0,375:1.00:375
chr11	68030015	rs901827	C	T	1975.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:55,86:0.61:141
chr11	68080214	.	C	CGCT	614.73	.	AC=1;AF=0.500;AN=2;DP=74;set=Intersection	GT:AD:AF:DP	0/1:40,20:0.33:60
chr11	68115764	rs643981	C	T	1925.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:28,79:0.74:107
chr11	68131167	rs10791978	A	T	3002.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr11	68133035	rs314776	T	C	3099.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:76,140:0.65:216
chr11	68154188	rs4988319	G	A	2782.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:89,125:0.58:214
chr11	68170825	rs687482	A	G	1545.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.70;SOR=3.664;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr11	68170825	.	AAAGTTGCG	GAAGTTGCG,GAAGTTGCT	533	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.32;FR=0.5000,0.5000;HP=2;HapScore=2;MGOF=1;MMLQ=28;MQ=60.0;NF=31,10;NR=5,2;PP=533,151;QD=15.7714225708;SC=AGGTGCAGGTAAAGTTGCGGC;SbPval=0.55;Source=Platypus;TC=36;TCF=31;TCR=5;TR=36,12;WE=68170841;WS=68170823;set=Platypus	GT:AF:DP	0/1:1.00:36
chr11	68170833	rs686921	G	T	339.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.249;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.93;ReadPosRankSum=0.658;SOR=0.348;set=HC	GT:AD:AF:DP	0/1:33,16:0.33:49
chr11	68171013	rs545382	T	C	11007.77	.	AC=2;AF=1.00;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	1/1:0,417:1.00:417
chr11	68173861	rs471966	C	T	190.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.414;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=4.891;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.60;ReadPosRankSum=-0.307;SOR=1.817;set=HC	GT:AD:AF:DP	0/1:42,11:0.21:53
chr11	68177510	rs2306862	C	T	5887.77	.	AC=1;AF=0.500;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	0/1:150,277:0.65:427
chr11	68179166	rs689179	A	G	865.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:85,44:0.34:129
chr11	68181621	rs41478448	A	G	2070.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:33,81:0.71:114
chr11	68192518	rs554734	T	G	3422.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:76,152:0.67:228
chr11	68192690	rs556442	G	A	1324.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.949;ClippingRankSum=0.000;DB;DP=263;ExcessHet=3.0103;FS=3.090;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.15;ReadPosRankSum=-1.033;SOR=0.911;set=HC	GT:AD:AF:DP	0/1:184,73:0.28:257
chr11	68201295	rs3736228	C	T	1837.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:37,80:0.68:117
chr11	68305494	rs60212556	C	T	1470.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:39,65:0.62:104
chr11	68305521	rs11403965	G	GT	381.73	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:37,16:0.30:53
chr11	68312645	rs10896340	A	G	148.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.712;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=7.586;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.98;ReadPosRankSum=1.577;SOR=2.551;set=HC	GT:AD:AF:DP	0/1:40,10:0.20:50
chr11	68315798	rs10736668	C	A	2003.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr11	68326236	rs12271290	C	T	477.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:17,20:0.54:37
chr11	68331715	rs10501398	C	G	767.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:56,39:0.41:95
chr11	68341722	rs3740631	T	G	2263.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:40,97:0.71:137
chr11	68343593	rs3740629	C	T	400.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:12,16:0.57:28
chr11	68358106	rs5792446	CTTTTA	C	1234.73	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:17,32:0.65:49
chr11	68377602	rs7104877	A	C	3656.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:88,168:0.66:256
chr11	68382193	rs12941	C	T	2972.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:48,130:0.73:178
chr11	68456410	rs3136540	T	C	13466.77	.	AC=2;AF=1.00;AN=2;DB;DP=500;set=Intersection	GT:AD:AF:DP	1/1:0,497:1.00:497
chr11	68458470	rs1042577	T	C	5400.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr11	68476011	rs4930597	A	G	2006.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr11	68512543	rs12365708	A	G	1371.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:37,69:0.65:106
chr11	68530318	rs7112615	C	A	2933.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:1,107:0.99:108
chr11	68548260	rs3019576	C	A	7531.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:2,303:0.99:305
chr11	68549340	rs2228502	A	G	9912.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	1/1:0,377:1.00:377
chr11	68560787	rs2229737	C	T	506.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:11,22:0.67:33
chr11	68562328	rs2229738	C	T	1407.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:210,89:0.30:299
chr11	68566647	.	GAAA	G	882.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.826;ClippingRankSum=0.000;DP=93;ExcessHet=3.0103;FS=3.875;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.59;ReadPosRankSum=0.517;SOR=1.320;set=HC	GT:AD:AF:DP	0/1:66,26:0.28:92
chr11	68566648	.	A	AC	1304	.	AC=1;AF=0.500;AN=2;BRF=0.4;FR=0.5000;HP=4;HapScore=1;MGOF=1;MMLQ=24;MQ=59.97;NF=12;NR=3;PP=1304;QD=89.0;SC=CTTCATACGGAAAAATTTCAT;SbPval=0.64;Source=Platypus;TC=56;TCF=44;TCR=12;TR=15;WE=68566659;WS=68566638;set=Platypus	GT:AD:AF:DP	0/1:41,15:0.27:56
chr11	68566649	.	AAA	GCT	1272	.	AC=1;AF=0.500;AN=2;BRF=0.4;FR=0.5000;HP=4;HapScore=1;MGOF=1;MMLQ=24;MQ=59.98;NF=16;NR=3;PP=1272;QD=70.2877828875;SC=TTCATACGGAAAAATTTCATC;SbPval=0.71;Source=Platypus;TC=74;TCF=60;TCR=14;TR=19;WE=68566659;WS=68566638;set=Platypus	GT:AD:AF:DP	0/1:55,19:0.26:74
chr11	68566651	.	A	ACGCT	882.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.119;ClippingRankSum=0.000;DP=93;ExcessHet=3.0103;FS=3.865;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.49;ReadPosRankSum=0.865;SOR=1.291;set=HC	GT:AD:AF:DP	0/1:67,26:0.28:93
chr11	68566839	rs3019603	G	A	5093.73	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:7,221:0.97:228
chr11	68658686	rs61887147	C	A	3395.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:103,154:0.60:257
chr11	68665307	rs143387014	G	A	77.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:19,6:0.24:25
chr11	68668208	rs668576	A	G	1431.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:149,76:0.34:225
chr11	68671104	rs629426	A	G	564.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:62,33:0.35:95
chr11	68671280	rs111612765	G	GCCGCCGCCATCTTC	1083.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.177;ClippingRankSum=0.000;DB;DP=499;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=0.000;QD=2.41;ReadPosRankSum=1.233;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:360,89:0.20:449
chr11	68671477	rs1249463	T	C	7346.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:1,278:1.00:279
chr11	68678962	rs560096	T	C	4651.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.748;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.58;ReadPosRankSum=1.458;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:2,173:0.99:175
chr11	68700701	rs645436	G	C	775.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:14,28:0.67:42
chr11	68700821	rs140654955	C	T	1761.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:162,96:0.37:258
chr11	68703009	rs598255	C	G	1228.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr11	68703959	rs622082	A	G	1638.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:202,84:0.29:286
chr11	68704264	rs546382	C	T	1659.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:205,96:0.32:301
chr11	68705504	rs513615	G	T	204.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:11,9:0.45:20
chr11	68705674	rs17612126	C	A	2278.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:63,107:0.63:170
chr11	68705876	rs4378405	G	A	297.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:4,14:0.78:18
chr11	68748003	rs34847539	T	C	6272.77	.	AC=1;AF=0.500;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	0/1:154,289:0.65:443
chr11	68773403	rs11544722	G	A	2667.77	.	AC=1;AF=0.500;AN=2;DB;DP=492;set=Intersection	GT:AD:AF:DP	0/1:333,152:0.31:485
chr11	68773740	rs60308539	G	A	378.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.385;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=2.532;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.26;ReadPosRankSum=-0.025;SOR=1.105;set=HC	GT:AD:AF:DP	0/1:51,21:0.29:72
chr11	68773810	rs57545280	AG	A	189.27	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:2,10:0.83:12
chr11	68777196	.	G	A	811.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.539;ClippingRankSum=0.000;DP=140;ExcessHet=3.0103;FS=0.700;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.01;ReadPosRankSum=0.385;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:88,47:0.35:135
chr11	68816370	rs4930642	A	G	2314.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr11	68822739	rs1470892	T	C	27423.77	.	AC=2;AF=1.00;AN=2;DB;DP=1028;set=Intersection	GT:AD:AF:DP	1/1:0,1021:1.00:1021
chr11	68825037	rs3750973	A	C	4582.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr11	68830226	rs10792015	G	A	2790.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr11	68831293	rs11228472	C	G	2008.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr11	68834968	rs6591368	T	C	5319.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr11	68835182	rs10750840	T	A	1607.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr11	68839334	rs10896415	G	A	11611.77	.	AC=2;AF=1.00;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	1/1:2,437:1.00:439
chr11	68840014	rs3750963	G	A	4569.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr11	68840397	rs1466221	T	C	6201.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr11	68840412	rs1466220	C	G	6723.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr11	68840617	rs3750966	T	A	895.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr11	68845867	rs7945151	G	A	2455.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:1,80:0.99:81
chr11	68846098	rs4930649	A	G	18404.77	.	AC=2;AF=1.00;AN=2;DB;DP=710;set=Intersection	GT:AD:AF:DP	1/1:2,701:1.00:703
chr11	68846519	rs7124310	A	C	4738.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr11	68847138	rs12804893	T	C	969.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr11	68849073	rs3829240	G	A	4170.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr11	68851414	rs2376558	T	C	4941.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr11	68851466	rs896973	G	T	4467.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr11	68855233	rs1551305	G	A	1379.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr11	68855363	rs3829241	G	A	1868.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr11	69466115	rs7177	C	A	600.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:20,24:0.55:44
chr11	69482224	rs77570546	A	G	3723.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:81,173:0.68:254
chr11	69588729	rs2073464	G	A	12047.77	.	AC=2;AF=1.00;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	1/1:0,452:1.00:452
chr11	69589959	rs9666584	A	G	254.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr11	69625511	rs7932320	T	C	932.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:93,53:0.36:146
chr11	69630973	rs3926882	G	A	1825.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.618;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=0.789;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.14;ReadPosRankSum=0.987;SOR=0.558;set=HC	GT:AD:AF:DP	0/1:90,49:0.35:139
chr11	69630978	rs7483837	G	A	1832.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.323;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.14;ReadPosRankSum=1.185;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:98,53:0.35:151
chr11	69924226	rs2509134	C	T	326.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr11	69924352	rs11233117	C	G	286.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:32,18:0.36:50
chr11	69931876	rs2509128	C	G	657.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr11	69933891	rs76718681	G	A	3125.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:81,139:0.63:220
chr11	69949135	rs55698329	GCC	G	3791.73	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr11	69949327	rs2509147	C	T	1349.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:20,58:0.74:78
chr11	69949444	rs12293326	C	A	41.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.949;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.21;ReadPosRankSum=-0.592;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:9,4:0.31:13
chr11	69954412	rs2509182	A	G	6115.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr11	69957917	rs9666157	A	G	774.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.584;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=4.934;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.84;ReadPosRankSum=2.616;SOR=1.081;set=HC	GT:AD:AF:DP	0/1:153,49:0.24:202
chr11	69957940	rs2515251	C	A	4218.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr11	69962432	rs9666084	A	T	464.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:64,29:0.31:93
chr11	69962642	rs2515245	A	G	2461.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr11	69970412	rs2509160	G	A	10162.77	.	AC=2;AF=1.00;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	1/1:0,374:1.00:374
chr11	69970637	rs2515258	A	G	1875.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr11	69978358	rs2515264	G	C	1284.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr11	69995755	rs35947316	T	TA	342.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.325;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=1.093;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.149;QD=4.34;ReadPosRankSum=0.520;SOR=0.880;set=HC	GT:AD:AF:DP	0/1:46,33:0.42:79
chr11	69998437	rs57758879	T	C	149.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.321;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.36;ReadPosRankSum=0.106;SOR=1.371;set=HC	GT:AD:AF:DP	0/1:8,8:0.50:16
chr11	69998470	rs12807936	C	T	1552.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr11	69999122	rs10160639	A	C	1188.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr11	69999252	rs3781663	G	A	2606.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr11	70001976	rs10751195	A	G	3549.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr11	70002184	rs59375526	TA	T	1653.73	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:4,75:0.95:79
chr11	70007311	rs2276066	A	G	5299.77	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:135,232:0.63:367
chr11	70007392	rs2276067	A	G	7324.77	.	AC=1;AF=0.500;AN=2;DB;DP=597;set=Intersection	GT:AD:AF:DP	0/1:245,349:0.59:594
chr11	70007562	rs2276069	C	A	1751.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:31,68:0.69:99
chr11	70007865	rs2155461	A	C	5453.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr11	70015951	rs56751551	C	T	630.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:83,35:0.30:118
chr11	70016058	rs17333013	A	C	2447.77	.	AC=1;AF=0.500;AN=2;DB;DP=451;set=Intersection	GT:AD:AF:DP	0/1:309,139:0.31:448
chr11	70016247	rs35843284	T	TG	3110.73	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr11	70016345	rs57900749	T	C	234.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:20,13:0.39:33
chr11	70033826	rs35553507	C	T	6979.77	.	AC=1;AF=0.500;AN=2;DB;DP=480;set=Intersection	GT:AD:AF:DP	0/1:158,312:0.66:470
chr11	70034096	rs3740722	G	A	1654.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:39,66:0.63:105
chr11	70049523	rs1131677	A	G	1275.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:133,74:0.36:207
chr11	70118251	rs670012	T	G	386.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:13,16:0.55:29
chr11	70171567	rs113854811	TAC	T	268.73	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:42,13:0.24:55
chr11	70171837	rs12280045	A	G	60.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:12,4:0.25:16
chr11	70172975	rs6592537	C	T	569.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:53,31:0.37:84
chr11	70179672	rs2282481	C	T	857.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:91,49:0.35:140
chr11	70184595	.	C	A	1908.77	.	AC=1;AF=0.500;AN=2;DP=119;set=Intersection	GT:AD:AF:DP	0/1:37,80:0.68:117
chr11	70185325	rs1061328	C	T	1559.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:218,95:0.30:313
chr11	70190019	rs55738915	C	T	681.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:31,30:0.49:61
chr11	70194175	rs7935969	G	A	331.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:46,19:0.29:65
chr11	70196302	rs66542029	A	T	262.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:25,12:0.32:37
chr11	70200529	rs17853270	C	T	2482.77	.	AC=1;AF=0.500;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	0/1:279,138:0.33:417
chr11	70200594	rs7943389	C	T	1193.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:100,54:0.35:154
chr11	70202127	rs66989619	G	C	73.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.110;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.17;ReadPosRankSum=0.625;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:28,6:0.18:34
chr11	70208311	rs7130178	G	A	1195.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:151,69:0.31:220
chr11	70208350	rs10751231	G	A	7995.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr11	70211384	rs60917762	C	T	791.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:121,44:0.27:165
chr11	70211574	rs670310	A	G	2375.77	.	AC=1;AF=0.500;AN=2;DB;DP=478;set=Intersection	GT:AD:AF:DP	0/1:322,142:0.31:464
chr11	70218548	rs10466703	C	T	814.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.582;ClippingRankSum=0.000;DB;DP=270;ExcessHet=3.0103;FS=0.550;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.09;ReadPosRankSum=0.645;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:205,59:0.22:264
chr11	70221204	rs67283107	C	T	763.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:66,39:0.37:105
chr11	70228032	rs10635017	A	ATC	328.73	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:20,12:0.38:32
chr11	70229171	rs552282	G	A	1391.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:158,74:0.32:232
chr11	70253389	rs2298396	C	T	193.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:13,9:0.41:22
chr11	70253475	rs2298397	C	T	699.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:61,36:0.37:97
chr11	70253586	rs569732	T	C	791.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:90,47:0.34:137
chr11	70260598	rs34053053	C	T	485.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:118,34:0.22:152
chr11	70260609	rs7932550	T	C	593.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.072;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-1.928;QD=3.19;ReadPosRankSum=0.938;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:147,39:0.21:186
chr11	70268910	rs12802851	C	T	413.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:31,20:0.39:51
chr11	70281007	rs7131282	T	C	441.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:50,24:0.32:74
chr11	70282629	rs6894	A	C	465.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:56,26:0.32:82
chr11	70349061	rs7110158	A	G	4417.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:1,169:0.99:170
chr11	70507605	rs3837380	TACACACACACACACACACACACACACACACAC	T,TACACACACACACACACACACACACAC	2224.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.515;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=4.163;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.07;MQRankSum=0.248;QD=22.70;ReadPosRankSum=-1.054;SOR=2.681;set=HC	GT:AD:AF:DP	1/2:15,52,31:0.53,0.32:98
chr11	70666765	rs11237599	C	T	783.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:74,43:0.37:117
chr11	70672399	rs3019835	G	A	2097.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr11	70757620	rs4409861	T	C	2609.77	.	AC=1;AF=0.500;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	0/1:245,138:0.36:383
chr11	70757705	rs4246962	C	T	6578.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr11	70761002	.	TA	T	148.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.689;ClippingRankSum=0.000;DP=145;ExcessHet=3.0103;FS=1.011;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.11;ReadPosRankSum=1.889;SOR=0.498;set=HC	GT:AD:AF:DP	0/1:98,36:0.27:134
chr11	70766554	rs4077321	C	T	488.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:19,25:0.57:44
chr11	70766664	rs4495913	A	G	401.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr11	70777553	rs10899691	A	C	2672.77	.	AC=1;AF=0.500;AN=2;DB;DP=560;set=Intersection	GT:AD:AF:DP	0/1:391,159:0.29:550
chr11	70777566	rs12287441	A	G	2227.77	.	AC=1;AF=0.500;AN=2;DB;DP=520;set=Intersection	GT:AD:AF:DP	0/1:372,140:0.27:512
chr11	70777723	rs10793403	C	T	760.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:104,41:0.28:145
chr11	70789000	rs11238042	G	A	4238.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:87,184:0.68:271
chr11	70794485	rs67223333	C	G	1294.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:152,73:0.32:225
chr11	70798895	rs35132270	CG	C	3827.73	.	AC=1;AF=0.500;AN=2;DB;DP=174;MQ=60.06;set=Intersection	GT:AD:AF:DP	0/1:75,96:0.56:171
chr11	70798902	rs34650500	G	T	3878.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:77,101:0.57:178
chr11	70805605	.	G	A	4119.77	.	AC=1;AF=0.500;AN=2;DP=284;set=Intersection	GT:AD:AF:DP	0/1:97,186:0.66:283
chr11	71146577	rs909217	G	A	5377.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr11	71146691	rs760241	A	G	7272.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr11	71146952	rs1792268	G	A	4943.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:1,176:0.99:177
chr11	71149069	rs949176	A	G	4440.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:1,156:0.99:157
chr11	71150217	rs2852853	C	T	1151.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr11	71152461	rs949177	A	G	4835.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr11	71153459	rs11603330	C	A	9640.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	1/1:0,350:1.00:350
chr11	71155153	rs1790334	A	G	12797.77	.	AC=2;AF=1.00;AN=2;DB;DP=493;set=Intersection	GT:AD:AF:DP	1/1:0,488:1.00:488
chr11	71155171	rs1044482	C	T	13760.77	.	AC=2;AF=1.00;AN=2;DB;DP=514;set=Intersection	GT:AD:AF:DP	1/1:0,509:1.00:509
chr11	71155778	rs112621523	CA	C	71.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.402;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.97;ReadPosRankSum=-1.231;SOR=0.523;set=HC	GT:AD:AF:DP	0/1:56,18:0.24:74
chr11	71164471	rs12789751	G	A	2876.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr11	71164544	rs12791871	A	C	1032.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr11	71166060	rs2276359	T	TG	6618.73	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr11	71166337	rs1790373	A	G	1680.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr11	71169547	rs2276360	G	C	7956.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr11	71169648	rs2276361	A	G	2482.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr11	71174452	rs2276362	A	G	10035.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	1/1:0,382:1.00:382
chr11	71174589	rs1629304	T	C	4127.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr11	71183474	rs2282621	C	T	5200.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.70;SOR=0.816;set=HC	GT:AD:AF:DP	1/1:0,119:1.00:119
chr11	71183477	rs2282620	C	T	5216.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.59;SOR=0.856;set=HC	GT:AD:AF:DP	1/1:0,117:1.00:117
chr11	71183645	rs2282619	T	C	304.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr11	71184190	rs7935125	C	A	4204.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr11	71184678	rs7950441	A	C	4902.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr11	71185479	rs2276354	T	C	11069.77	.	AC=2;AF=1.00;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	1/1:0,418:1.00:418
chr11	71185518	rs2186778	T	C	14003.77	.	AC=2;AF=1.00;AN=2;DB;DP=538;set=Intersection	GT:AD:AF:DP	1/1:0,533:1.00:533
chr11	71188502	rs3794065	G	A	8004.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr11	71189436	rs2276353	T	C	4515.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr11	71192529	rs368250598	AT	A	208.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.115;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.99;ReadPosRankSum=2.057;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:67,38:0.36:105
chr11	71192602	rs3814731	T	C	1425.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr11	71192851	rs3814734	A	G	3973.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr11	71277083	rs146926834	C	T	2167.77	.	AC=1;AF=0.500;AN=2;DB;DP=498;set=Intersection	GT:AD:AF:DP	0/1:343,144:0.30:487
chr11	71279847	rs186393988	G	A	6380.77	.	AC=1;AF=0.500;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	0/1:145,285:0.66:430
chr11	71279936	rs72475645	A	C	619.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.226;ClippingRankSum=0.000;DB;DP=474;ExcessHet=3.0103;FS=13.453;MLEAC=1;MLEAF=0.500;MQ=58.42;MQRankSum=-14.600;QD=1.31;ReadPosRankSum=2.810;SOR=1.742;set=HC	GT:AD:AF:DP	0/1:399,73:0.15:472
chr11	71279995	rs200834593	C	T	1835.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.250;ClippingRankSum=0.000;DB;DP=364;ExcessHet=3.0103;FS=19.519;MLEAC=1;MLEAF=0.500;MQ=56.95;MQRankSum=-10.232;QD=5.06;ReadPosRankSum=-0.640;SOR=1.697;set=HC	GT:AD:AF:DP	0/1:296,67:0.18:363
chr11	71280000	.	T	G	1763.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.407;ClippingRankSum=0.000;DP=348;ExcessHet=3.0103;FS=16.871;MLEAC=1;MLEAF=0.500;MQ=56.77;MQRankSum=-10.160;QD=5.08;ReadPosRankSum=-0.959;SOR=1.633;set=HC	GT:AD:AF:DP	0/1:284,63:0.18:347
chr11	71280070	.	G	C	125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.762;ClippingRankSum=0.000;DP=140;ExcessHet=3.0103;FS=16.738;MLEAC=1;MLEAF=0.500;MQ=56.05;MQRankSum=-7.248;QD=0.91;ReadPosRankSum=-1.458;SOR=3.760;set=HC	GT:AD:AF:DP	0/1:124,14:0.10:138
chr11	71280089	rs78987639	T	C	48.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.136;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=7.150;MLEAC=1;MLEAF=0.500;MQ=57.71;MQRankSum=-6.716;QD=0.48;ReadPosRankSum=-0.788;SOR=2.428;set=HC	GT:AD:AF:DP	0/1:93,8:0.08:101
chr11	71290670	rs2015464	C	G	1610.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:44,71:0.62:115
chr11	71290740	rs4081429	A	C	2153.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:117,106:0.48:223
chr11	71290790	.	A	ACAGCAGCTGGACTGGGAGCAGCAGGACCTG	1631.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.251;ClippingRankSum=0.000;DP=213;ExcessHet=3.0103;FS=0.690;MLEAC=1;MLEAF=0.500;MQ=55.90;MQRankSum=-12.256;QD=10.53;ReadPosRankSum=-2.595;SOR=0.808;set=HC	GT:AD:AF:DP	0/1:116,39:0.25:155
chr11	71498500	rs12786196	G	T	168.79	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr11	71498562	rs12786239	G	C	854.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.60;QD=44.99;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr11	71498567	rs12788471	A	C	871.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.78;QD=43.59;SOR=1.127;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr11	71498591	rs12270466	C	G	1025.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.15;QD=42.74;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr11	71498601	rs12283300	G	T	1084.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.36;QD=40.18;SOR=1.302;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr11	71498648	rs12277291	A	G	792.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.44;QD=37.75;SOR=1.508;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr11	71498671	rs12283346	G	C	750.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	71498694	rs11234942	A	G	605.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr11	71576817	rs57369261	G	GT	216.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.923;ClippingRankSum=0.000;DB;DP=258;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.86;ReadPosRankSum=-0.246;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:205,47:0.19:252
chr11	71634606	rs11446262	G	GT	420	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.603;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=2.501;MLEAC=2;MLEAF=1.000;MQ=60.50;MQRankSum=0.694;QD=13.55;ReadPosRankSum=-0.247;SOR=2.147;set=HC	GT:AD:AF:DP	1/1:5,26:0.84:31
chr11	71668362	rs3216157	CT	C	3938.73	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr11	71701523	rs2276384	G	A	1184.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr11	71707465	rs1055452	T	C	752.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr11	71712175	rs1892919	G	A	3533.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr11	71714526	rs949324	G	C	7761.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.076;ClippingRankSum=0.000;DB;DP=277;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=28.43;ReadPosRankSum=1.965;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:2,271:0.99:273
chr11	71714526	.	GGT	CGG	2947	.	AC=2;AF=1.00;AN=2;BRF=0.44;FR=1.0000;HP=1;HapScore=1;MGOF=1;MMLQ=24;MQ=60.0;NF=130;NR=75;PP=2947;QD=20;SC=GACCAGGTGAGGTCAGCATCG;SbPval=0.53;Source=Platypus;TC=211;TCF=133;TCR=78;TR=205;WE=71714536;WS=71714516;set=Platypus	GT:AD:AF:DP	1/1:6,205:0.97:211
chr11	71714528	rs949323	T	G	12331.73	.	AC=2;AF=1.00;AN=2;DB;DP=289;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.20;SOR=1.233;set=HC	GT:AD:AF:DP	1/1:0,279:1.00:279
chr11	71715215	rs2845857	C	G	20716.77	.	AC=2;AF=1.00;AN=2;DB;DP=465;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.84;SOR=0.755;set=HC	GT:AD:AF:DP	1/1:0,462:1.00:462
chr11	71715218	rs2852365	T	C	20912.77	.	AC=2;AF=1.00;AN=2;DB;DP=471;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.69;SOR=0.746;set=HC	GT:AD:AF:DP	1/1:0,468:1.00:468
chr11	71719619	rs2155145	G	T	1032.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr11	71727422	rs1057992	A	C	1136.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr11	71728543	rs34393610	G	GA	2350.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.722;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.45;MQRankSum=0.959;QD=17.03;ReadPosRankSum=1.436;SOR=0.680;set=HC	GT:AD:AF:DP	1/1:16,122:0.88:138
chr11	71728908	rs11278712	AGTCAAC	A	2212.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr11	71729656	rs949325	A	G	1176.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr11	71730715	rs2298456	T	A	993.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr11	71733519	rs10128658	C	T	2616.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr11	71734211	rs2298457	T	C	3029.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr11	71735297	rs150180847	A	T	1325.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:32,56:0.64:88
chr11	71740378	rs35948003	A	AAC	9703.73	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr11	71740521	rs1939247	A	T	1177.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr11	71783477	rs144733866	T	C	2528.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:78,117:0.60:195
chr11	71797422	rs597513	T	A	11953.77	.	AC=2;AF=1.00;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	1/1:0,450:1.00:450
chr11	71849741	rs652197	C	T	1017.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr11	71883540	rs633738	G	A	5626.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr11	71929526	rs651646	T	A	856.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr11	71932120	rs2508202	G	C	6981.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:2,303:0.99:305
chr11	71936225	rs144989913	GGCTCCTTGCGGGCTGGCGTGGACCGGGA	G	536.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.291;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=3.220;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.79;ReadPosRankSum=-0.580;SOR=1.445;set=HC	GT:AD:AF:DP	0/1:19,15:0.44:34
chr11	72281818	rs380126	A	G	6137.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:1,232:1.00:233
chr11	72281884	rs433640	C	T	12222.77	.	AC=2;AF=1.00;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	1/1:0,424:1.00:424
chr11	72282039	rs409512	T	C	26116.77	.	AC=2;AF=1.00;AN=2;DB;DP=999;set=Intersection	GT:AD:AF:DP	1/1:0,988:1.00:988
chr11	72289176	rs379276	C	G	1222.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr11	72289291	rs1135029	T	C	6599.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr11	72290199	rs11605051	G	A	3713.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr11	72291477	rs56350365	G	A	1360.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr11	72291883	rs644698	C	A	1303.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr11	72291927	rs577536	T	C	1667.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr11	72292167	rs3781939	G	T	1940.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.11;SOR=1.364;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr11	72292176	rs7108477	C	T	2041.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.39;SOR=1.203;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr11	72292185	rs3781938	C	A	1816.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.81;SOR=1.493;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr11	72292353	rs57803658	G	GA	5043.73	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr11	72292860	rs376724	C	T	1695.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr11	72293039	rs379638	G	A	2545.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr11	72293079	rs414178	A	G	1573.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr11	72293602	rs4944557	A	G	2627.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr11	72294714	rs408269	C	T	522.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr11	72294734	rs56267207	A	AC	289.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr11	72295502	rs366711	T	C	13868.77	.	AC=2;AF=1.00;AN=2;DB;DP=530;set=Intersection	GT:AD:AF:DP	1/1:1,525:1.00:526
chr11	72295906	rs452228	A	G	11068.77	.	AC=2;AF=1.00;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	1/1:0,419:1.00:419
chr11	72296039	rs907850	G	T	5897.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr11	72296700	rs424234	C	T	3216.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr11	72307501	.	ATC	A	45.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.568;ClippingRankSum=0.000;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.09;ReadPosRankSum=2.150;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:34,8:0.19:42
chr11	72307528	.	T	TCA	297.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.146;ClippingRankSum=0.000;DP=125;ExcessHet=3.0103;FS=5.448;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.89;ReadPosRankSum=2.142;SOR=1.015;set=HC	GT:AD:AF:DP	0/1:78,25:0.24:103
chr11	72316148	rs78279319	C	G	1086.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:79,52:0.40:131
chr11	72326210	rs572421	A	G	4276.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr11	72354028	rs907853	C	A	6342.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr11	72361883	rs341038	T	C	1678.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr11	72361893	rs72349218	TCCCTGAC	T	1860.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr11	72361920	.	TACAC	T	680.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.280;ClippingRankSum=0.000;DP=77;ExcessHet=3.0103;FS=3.360;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.13;ReadPosRankSum=1.326;SOR=1.501;set=HC	GT:AD:AF:DP	0/1:21,24:0.53:45
chr11	72363759	rs12146545	G	A	6884.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr11	72366929	rs907858	C	A	4768.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr11	72367102	rs907857	C	T	862.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr11	72368986	rs3781916	T	G	4331.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr11	72396800	rs12802369	A	G	7741.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr11	72396990	rs12805218	G	A	7071.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr11	72399607	rs2306609	G	A	5819.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr11	72404003	rs11235567	A	G	1804.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr11	72404958	rs12276972	A	C	3391.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr11	72405868	rs2306608	C	T	576.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:51,29:0.36:80
chr11	72407770	rs2306612	G	C	576.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:75,30:0.29:105
chr11	72407977	rs11602233	C	A	479.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:50,24:0.32:74
chr11	72408657	rs2291289	C	T	1844.77	.	AC=1;AF=0.500;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	0/1:288,109:0.27:397
chr11	72408840	rs200428900	AGGATGGCGG	A	1128.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.146;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=1.677;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.33;ReadPosRankSum=0.079;SOR=0.950;set=HC	GT:AD:AF:DP	0/1:87,34:0.28:121
chr11	72409159	rs7121351	A	G	2371.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:53,103:0.66:156
chr11	72411082	rs7110501	T	C	884.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:141,54:0.28:195
chr11	72411099	rs10898866	C	T	925.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:146,59:0.29:205
chr11	72412675	rs11235574	A	G	529.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:52,29:0.36:81
chr11	72416732	rs4598696	GG	CT	1236.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;JOINED;set=Intersection	GT:AD:AF:DP	0/1:94,37:0.28:131
chr11	72528973	rs891655	C	T	936.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr11	72532569	rs1864651	G	T	5102.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr11	72532621	rs1864652	T	G	5018.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr11	72532708	rs11235603	C	T	1591.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr11	72533624	rs139902397	TCTGCCTC	T	6027.73	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:57,152:0.73:209
chr11	72533711	rs4944806	A	G	3228.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr11	72538141	rs3862793	T	C	2027.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr11	72540225	rs891657	G	T	2341.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr11	72552385	.	CAA	C	114.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.949;ClippingRankSum=-0.000;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.65;ReadPosRankSum=0.001;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:6,9:0.60:15
chr11	72554407	rs3217361	A	AGGG	26697.73	.	AC=2;AF=1.00;AN=2;DB;DP=606;set=Intersection	GT:AD:AF:DP	1/1:4,594:0.99:598
chr11	72598704	rs7129851	G	A	3048.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr11	72788823	rs6592510	C	T	4321.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr11	72794602	rs200056109	G	GA	168.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.133;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=0.000;QD=1.44;ReadPosRankSum=-1.087;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:89,28:0.24:117
chr11	72945341	rs2511241	C	T	13031.77	.	AC=2;AF=1.00;AN=2;DB;DP=474;set=Intersection	GT:AD:AF:DP	1/1:0,464:1.00:464
chr11	72946020	rs1783596	C	T	19231.77	.	AC=2;AF=1.00;AN=2;DB;DP=728;set=Intersection	GT:AD:AF:DP	1/1:0,721:1.00:721
chr11	72946140	rs3741156	G	C	3605.77	.	AC=1;AF=0.500;AN=2;DB;DP=598;set=Intersection	GT:AD:AF:DP	0/1:402,190:0.32:592
chr11	72946204	rs1626154	C	T	10777.77	.	AC=1;AF=0.500;AN=2;DB;DP=679;set=Intersection	GT:AD:AF:DP	0/1:198,469:0.70:667
chr11	73020375	rs139105330	G	GCTC	2390.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.462;ClippingRankSum=0.000;DB;DP=231;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.39;ReadPosRankSum=1.204;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:125,68:0.35:193
chr11	73020846	rs3741151	G	T	4026.77	.	AC=1;AF=0.500;AN=2;DB;DP=611;set=Intersection	GT:AD:AF:DP	0/1:388,216:0.36:604
chr11	73021084	rs3741149	C	T	2208.77	.	AC=1;AF=0.500;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	0/1:266,123:0.32:389
chr11	73066771	rs112840535	G	A	650.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:91,35:0.28:126
chr11	73072965	rs10553377	CCACA	C	1474.73	.	AC=1;AF=0.500;AN=2;DB;DP=133;MQ=60.08;set=Intersection	GT:AD:AF:DP	0/1:87,43:0.33:130
chr11	73073580	rs76764824	C	T	923.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.292;ClippingRankSum=0.000;DB;DP=223;ExcessHet=3.0103;FS=0.577;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.16;ReadPosRankSum=-0.328;SOR=0.623;set=HC	GT:AD:AF:DP	0/1:165,57:0.26:222
chr11	73073846	rs75912489	G	A	1335.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:102,66:0.39:168
chr11	73100232	rs11826896	C	T	461.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.965;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.790;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.28;ReadPosRankSum=-1.300;SOR=0.805;set=HC	GT:AD:AF:DP	0/1:77,31:0.29:108
chr11	73100320	rs11826909	C	G	610.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:67,36:0.35:103
chr11	73104842	rs142455990	T	TC	2301.73	.	AC=1;AF=0.500;AN=2;DB;DP=344;MQ=60.06;set=Intersection	GT:AD:AF:DP	0/1:221,105:0.32:326
chr11	73106088	rs28641751	C	G	758.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:89,47:0.35:136
chr11	73106237	rs11544311	A	C	1521.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:151,86:0.36:237
chr11	73106294	rs17851510	A	C	772.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:84,42:0.33:126
chr11	73106408	rs7112924	C	T	823.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:98,42:0.30:140
chr11	73106690	rs7101831	T	C	173.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:29,11:0.28:40
chr11	73120653	rs10793060	A	G	717.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:77,37:0.32:114
chr11	73122340	rs1938777	A	G	124.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:17,8:0.32:25
chr11	73141627	rs11823913	C	G	83.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:9,5:0.36:14
chr11	73357710	rs3741144	G	A	5289.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr11	73362766	rs670811	C	T	8038.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr11	73364368	rs6592527	C	G	1854.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr11	73364629	rs7942217	T	A	1627.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr11	73364673	rs7952228	G	A	884.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr11	73366697	rs2008734	G	A	3277.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr11	73390772	rs71469461	GAA	G	9702.73	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr11	73415073	.	CA	C	32.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.106;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.13;ReadPosRankSum=-0.991;SOR=0.903;set=HC	GT:AD:AF:DP	0/1:20,9:0.31:29
chr11	73441772	rs2037709	A	C	2648.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr11	73675810	.	CTGTGTGTGTGTGTG	C,CTG	962.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.77;QD=38.51;SOR=3.014;set=HC	GT:AD:AF:DP	1/2:0,10,15:0.40,0.60:25
chr11	73715542	rs2075577	G	A	3556.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr11	73717024	rs1726747	AT	TC	3500.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr11	73717074	rs11235972	G	A	2832.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr11	73717121	rs2075576	C	T	5141.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr11	73717254	rs1800006	A	G	9395.77	.	AC=2;AF=1.00;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	1/1:0,354:1.00:354
chr11	73753268	rs35449717	CA	C	124.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.709;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.49;ReadPosRankSum=0.445;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:29,21:0.42:50
chr11	73785326	rs4453265	T	C	2636.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:59,118:0.67:177
chr11	73789777	rs1726735	T	G	3048.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:60,128:0.68:188
chr11	73796608	rs1095424	T	C	4100.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr11	73803389	rs7941525	C	T	202.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:14,11:0.44:25
chr11	73806443	rs11235995	C	T	2273.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:74,107:0.59:181
chr11	73825503	rs10898957	T	C	4107.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:108,182:0.63:290
chr11	73833944	rs60834556	G	A	87.80	.	AC=1;AF=0.500;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	0/1:1,4:0.80:5
chr11	73833957	rs145193996	C	CTGTCTGGCAAGTGA	333.73	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr11	73844434	rs61901246	A	G	1386.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:31,53:0.63:84
chr11	73850973	rs11236018	C	G	244.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:5,10:0.67:15
chr11	73872701	rs147282233	G	GA	570.73	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:8,30:0.79:38
chr11	73881580	rs3814724	T	A	524.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:8,20:0.71:28
chr11	73882260	rs1726746	T	G	3251.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:68,142:0.68:210
chr11	73947080	rs2302508	C	G	4064.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:109,188:0.63:297
chr11	73964689	rs3741133	G	A	1924.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:48,73:0.60:121
chr11	73978243	rs3741132	G	A	7405.77	.	AC=1;AF=0.500;AN=2;DB;DP=483;set=Intersection	GT:AD:AF:DP	0/1:152,325:0.68:477
chr11	73984657	.	G	GA	215.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.090;ClippingRankSum=0.000;DP=190;ExcessHet=3.0103;FS=0.700;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.874;QD=1.24;ReadPosRankSum=0.020;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:137,37:0.21:174
chr11	73988167	rs2282488	C	T	3909.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:77,170:0.69:247
chr11	73990342	rs112525190	A	C	178.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:26,9:0.26:35
chr11	73998512	rs79750170	A	C	267.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:23,13:0.36:36
chr11	73999993	.	CAA	C	225.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.292;ClippingRankSum=0.000;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.41;ReadPosRankSum=-1.144;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:14,10:0.42:24
chr11	74000180	.	T	TAA	230.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.437;ClippingRankSum=0.000;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.24;ReadPosRankSum=-0.682;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:24,20:0.45:44
chr11	74000249	rs11419151	T	TA	248.14	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.646;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.82;ReadPosRankSum=1.116;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:4,17:0.81:21
chr11	74015599	rs10898976	G	C	490.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:7,19:0.73:26
chr11	74047683	rs1044782	A	G	10436.77	.	AC=1;AF=0.500;AN=2;DB;DP=717;set=Intersection	GT:AD:AF:DP	0/1:226,487:0.68:713
chr11	74047743	rs36014178	T	A	3050.77	.	AC=1;AF=0.500;AN=2;DB;DP=568;set=Intersection	GT:AD:AF:DP	0/1:387,180:0.32:567
chr11	74049569	rs3867270	A	G	5529.77	.	AC=1;AF=0.500;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	0/1:159,261:0.62:420
chr11	74053547	rs592644	C	T	1791.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr11	74054346	rs641271	G	T	2557.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:46,110:0.71:156
chr11	74057647	rs519083	T	C	627.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:19,25:0.57:44
chr11	74057931	rs3741130	C	T	3984.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:103,178:0.63:281
chr11	74079475	rs11236077	A	G	1940.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:69,91:0.57:160
chr11	74085384	rs61288268	C	T	942.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:15,36:0.71:51
chr11	74085420	rs35170680	T	G	2818.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr11	74109166	rs12049823	A	G	4204.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.100;ClippingRankSum=0.000;DB;DP=285;ExcessHet=3.0103;FS=4.412;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.02;ReadPosRankSum=2.785;SOR=0.986;set=HC	GT:AD:AF:DP	0/1:92,188:0.67:280
chr11	74109342	rs904155	C	T	1668.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr11	74110353	rs515924	A	G	1336.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:18,55:0.75:73
chr11	74110542	rs676103	T	C	319.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:4,14:0.78:18
chr11	74203308	rs586088	T	A	5279.77	.	AC=1;AF=0.500;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	0/1:116,233:0.67:349
chr11	74204198	rs10736797	G	A	8598.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:0,334:1.00:334
chr11	74204269	rs10736798	T	G	8154.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr11	74204591	rs60455691	G	A	449.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:65,28:0.30:93
chr11	74204727	rs4944895	A	G	3285.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr11	74207856	rs643738	G	A	8060.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr11	74208029	rs655025	C	T	3682.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:76,157:0.67:233
chr11	74208214	rs656506	G	A	1898.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:39,79:0.67:118
chr11	74208592	rs657339	G	T	1272.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:31,58:0.65:89
chr11	74303841	rs2298572	T	C	5095.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr11	74324128	.	C	A	1375.77	.	AC=1;AF=0.500;AN=2;DP=82;set=Intersection	GT:AD:AF:DP	0/1:25,56:0.69:81
chr11	74340196	rs2298792	A	G	8992.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	1/1:0,334:1.00:334
chr11	74345550	rs3824999	T	G	1698.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr11	74347434	rs4944920	G	C	3443.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr11	74407676	rs3819242	C	T	229.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:25,13:0.34:38
chr11	74408384	rs10751240	C	T	4928.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr11	74408619	rs3741124	C	G	22877.77	.	AC=2;AF=1.00;AN=2;DB;DP=855;set=Intersection	GT:AD:AF:DP	1/1:1,848:1.00:849
chr11	74408633	rs3741123	A	G	22960.77	.	AC=2;AF=1.00;AN=2;DB;DP=883;set=Intersection	GT:AD:AF:DP	1/1:0,876:1.00:876
chr11	74413872	rs34528207	A	G	2017.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:57,91:0.61:148
chr11	74419357	rs1944937	C	T	449.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:40,20:0.33:60
chr11	74419378	rs7948433	C	T	536.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:56,29:0.34:85
chr11	74422194	.	A	C	429.77	.	AC=1;AF=0.500;AN=2;DP=40;set=Intersection	GT:AD:AF:DP	0/1:18,21:0.54:39
chr11	74429987	rs12417156	G	A	568.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:50,30:0.38:80
chr11	74431277	rs4944943	T	C	163.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:29,11:0.28:40
chr11	74641436	rs113880146	G	GA	54.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.062;ClippingRankSum=0.000;DB;DP=223;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=3.107;QD=0.26;ReadPosRankSum=-0.888;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:175,34:0.16:209
chr11	74645032	rs140602440	G	GTTCA	2539.73	.	AC=2;AF=1.00;AN=2;DB;DP=165;MQ=60.33;set=Intersection	GT:AD:AF:DP	1/1:4,96:0.96:100
chr11	74660504	rs1282689	A	C	10395.77	.	AC=2;AF=1.00;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	1/1:1,368:1.00:369
chr11	74660631	rs1282690	G	A	14303.77	.	AC=2;AF=1.00;AN=2;DB;DP=542;set=Intersection	GT:AD:AF:DP	1/1:1,532:1.00:533
chr11	74674616	rs562581	A	G	623.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:1,21:0.95:22
chr11	74676794	rs514534	G	C	5357.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr11	74700896	rs681566	A	G	7013.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr11	74705696	rs544115	T	C	22347.77	.	AC=2;AF=1.00;AN=2;DB;DP=837;set=Intersection	GT:AD:AF:DP	1/1:0,826:1.00:826
chr11	74862356	rs2851069	T	C	3024.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:2,109:0.98:111
chr11	74862391	rs1944612	A	G	4650.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr11	74904362	rs1621378	T	C	13093.77	.	AC=2;AF=1.00;AN=2;DB;DP=486;set=Intersection	GT:AD:AF:DP	1/1:3,477:0.99:480
chr11	74977185	rs2279130	C	T	558.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:42,30:0.42:72
chr11	74980376	rs35786880	C	T	88.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.013;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.55;ReadPosRankSum=0.058;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:10,6:0.38:16
chr11	74982882	rs36123903	G	A	686.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:9,28:0.76:37
chr11	74982939	.	C	T	22	.	AC=1;AF=0.500;AN=2;BRF=0.35;FR=0.5000;HP=1;HapScore=2;MGOF=19;MMLQ=26;MQ=60.0;NF=0;NR=3;PP=22;QD=18.9237375157;SC=AGGGATACACCGAAATGGCAT;SbPval=1.0;Source=Platypus;TC=10;TCF=2;TCR=8;TR=3;WE=74982947;WS=74982929;set=Platypus	GT:AD:AF:DP	0/1:7,3:0.30:10
chr11	74993182	rs526013	A	G	4708.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr11	74995226	rs480174	G	A	1049.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:32,46:0.59:78
chr11	75017436	rs536852	A	G	1162.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr11	75017666	rs515590	A	C	5294.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr11	75023093	rs546812	A	G	13460.77	.	AC=2;AF=1.00;AN=2;DB;DP=504;set=Intersection	GT:AD:AF:DP	1/1:4,494:0.99:498
chr11	75148157	.	C	T	411.77	.	AC=1;AF=0.500;AN=2;DP=75;set=Intersection	GT:AD:AF:DP	0/1:51,24:0.32:75
chr11	75152243	rs571353	C	T	2049.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:197,111:0.36:308
chr11	75154067	rs532454	C	T	1543.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:100,78:0.44:178
chr11	75155743	rs479574	T	C	120.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.172;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.16;ReadPosRankSum=-1.383;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:20,9:0.31:29
chr11	75160213	rs473462	G	A	239.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.714;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.999;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.76;ReadPosRankSum=-0.213;SOR=0.531;set=HC	GT:AD:AF:DP	0/1:68,19:0.22:87
chr11	75160575	rs518611	G	A	2270.77	.	AC=1;AF=0.500;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	0/1:244,129:0.35:373
chr11	75167704	rs1793410	T	C	2176.77	.	AC=1;AF=0.500;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	0/1:276,129:0.32:405
chr11	75188569	rs1790149	C	T	1085.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:120,63:0.34:183
chr11	75277628	rs584961	A	G	2740.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr11	75277757	rs650241	C	G	3646.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:68,161:0.70:229
chr11	75277992	rs651581	C	T	2591.77	.	AC=1;AF=0.500;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	0/1:247,140:0.36:387
chr11	75278040	rs35462148	G	GTCC	2200.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.520;ClippingRankSum=0.000;DB;DP=231;ExcessHet=3.0103;FS=1.323;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.356;QD=12.65;ReadPosRankSum=-1.283;SOR=0.550;set=HC	GT:AD:AF:DP	0/1:112,62:0.36:174
chr11	75279846	rs649257	C	T	1512.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:36,57:0.61:93
chr11	75282882	rs585821	G	A	10070.77	.	AC=1;AF=0.500;AN=2;DB;DP=623;set=Intersection	GT:AD:AF:DP	0/1:174,436:0.71:610
chr11	75298468	rs61895095	A	C	5842.77	.	AC=1;AF=0.500;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	0/1:144,258:0.64:402
chr11	75378674	rs12225010	A	C	378.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.525;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.24;ReadPosRankSum=0.017;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:18,19:0.51:37
chr11	75379022	rs115871621	C	T	3372.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:61,154:0.72:215
chr11	75428958	rs554202	A	G	2227.77	.	AC=1;AF=0.500;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	0/1:235,121:0.34:356
chr11	75428971	rs34643721	G	A	5311.77	.	AC=1;AF=0.500;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	0/1:140,245:0.64:385
chr11	75429216	rs146419096	A	G	511.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:16,19:0.54:35
chr11	75430950	rs650861	A	G	686.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:79,38:0.32:117
chr11	75438924	rs12284314	G	C	431.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:6,17:0.74:23
chr11	75440070	rs12281506	A	C	941.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:9,36:0.80:45
chr11	75442264	rs12281468	G	A	1820.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:53,83:0.61:136
chr11	75501207	rs10899123	C	G	520.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:48,30:0.38:78
chr11	75501852	rs2510635	A	G	2026.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr11	75507234	rs12222542	A	C	243.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:23,12:0.34:35
chr11	75511572	rs3060	T	C	1508.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:160,82:0.34:242
chr11	75526481	rs7118567	CC	AG	1411.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;JOINED;set=Intersection	GT:AD:AF:DP	0/1:45,38:0.46:83
chr11	75852448	rs636420	C	T	420.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:32,21:0.40:53
chr11	75902535	rs115591287	C	T	917.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.727;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.82;ReadPosRankSum=0.631;SOR=0.960;set=HC	GT:AD:AF:DP	0/1:21,37:0.64:58
chr11	75902539	rs11236648	A	G	2358.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.04;SOR=2.621;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr11	75902571	rs2508779	A	G	2526.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr11	75905929	rs11236649	G	A	58.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150;ClippingRankSum=-0.000;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.70;ReadPosRankSum=-0.674;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr11	75907438	rs3215303	AC	A	5528.73	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:79,178:0.69:257
chr11	75917189	rs1717626	G	C	599.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:56,27:0.33:83
chr11	75917334	rs1879633	T	C	2519.77	.	AC=1;AF=0.500;AN=2;DB;DP=523;set=Intersection	GT:AD:AF:DP	0/1:366,157:0.30:523
chr11	76115231	rs7113820	G	A	922.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:68,41:0.38:109
chr11	76183924	rs4245443	A	G	1236.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr11	76207633	rs10899226	G	A	2418.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr11	76227182	rs2508740	G	A	8079.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr11	76255911	rs17134958	C	T	1923.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.072;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=1.891;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.02;ReadPosRankSum=-1.431;SOR=0.459;set=HC	GT:AD:AF:DP	0/1:29,84:0.74:113
chr11	76260909	.	C	CT	128.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.463;ClippingRankSum=0.000;DP=64;ExcessHet=3.0103;FS=2.469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.11;ReadPosRankSum=-2.232;SOR=1.074;set=HC	GT:AD:AF:DP	0/1:43,18:0.30:61
chr11	76370792	rs4304809	A	G	9199.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	1/1:0,351:1.00:351
chr11	76371705	rs35130967	C	G	2237.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:39,88:0.69:127
chr11	76372418	rs3740778	T	C	7534.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr11	76406341	rs10751260	G	C	3086.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr11	76423664	rs11236891	C	A	641.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:9,25:0.74:34
chr11	76423840	rs12294685	T	C	1881.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:68,92:0.57:160
chr11	76423897	rs73501507	C	T	1271.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:44,58:0.57:102
chr11	76427674	rs10899265	G	C	6698.77	.	AC=1;AF=0.500;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	0/1:153,275:0.64:428
chr11	76427731	rs10751261	T	C	15599.77	.	AC=2;AF=1.00;AN=2;DB;DP=586;set=Intersection	GT:AD:AF:DP	1/1:4,572:0.99:576
chr11	76427823	rs11236900	T	C	10661.77	.	AC=1;AF=0.500;AN=2;DB;DP=720;set=Intersection	GT:AD:AF:DP	0/1:247,466:0.65:713
chr11	76429160	rs10899266	T	A	267.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.798;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.82;ReadPosRankSum=2.489;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:31,15:0.33:46
chr11	76430585	.	C	T	1371	.	AC=1;AF=0.500;AN=2;BRF=0.44;FR=0.5000;HP=4;HapScore=4;MGOF=21;MMLQ=28;MQ=59.23;NF=18;NR=14;PP=1371;QD=43.9303503921;SC=TCAAGGCATTCGGGGTCTGCA;SbPval=0.36;Source=Platypus;TC=73;TCF=45;TCR=28;TR=32;WE=76430605;WS=76430575;set=Platypus	GT:AD:AF:DP	0/1:41,32:0.44:73
chr11	76430597	.	A	G	1371	.	AC=1;AF=0.500;AN=2;BRF=0.44;FR=0.5000;HP=1;HapScore=4;MGOF=21;MMLQ=24;MQ=59.33;NF=27;NR=15;PP=1371;QD=33.4707431559;SC=GGGTCTGCACAAGGAGCACAC;SbPval=0.51;Source=Platypus;TC=83;TCF=54;TCR=29;TR=42;WE=76430605;WS=76430575;set=Platypus	GT:AD:AF:DP	0/1:41,42:0.51:83
chr11	76430597	.	A	AAGGAGCATACCTACCTGAGCGCGTGCACCCCTGCCCCGGACCCCCACTCAAGGCATTTGGGGTCTGCACG	2543.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.121;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=1.027;MLEAC=1;MLEAF=0.500;MQ=59.40;MQRankSum=-2.666;QD=36.34;ReadPosRankSum=-2.945;SOR=0.467;set=HC	GT:AD:AF:DP	0/1:49,21:0.30:70
chr11	76506572	rs1149620	T	A	523.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:89,32:0.26:121
chr11	76506634	rs374690138	C	T	4161.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:103,185:0.64:288
chr11	76507403	rs11236938	G	A	6980.77	.	AC=1;AF=0.500;AN=2;DB;DP=469;set=Intersection	GT:AD:AF:DP	0/1:141,319:0.69:460
chr11	76507692	rs1149621	T	A	2534.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr11	76579419	.	ATCTCTCTC	A	155.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.068;ClippingRankSum=-0.000;DP=15;ExcessHet=3.0103;FS=2.632;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.16;ReadPosRankSum=-1.321;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:6,5:0.45:11
chr11	76579433	.	CTC	GTG	163	.	AC=1;AF=0.500;AN=2;BRF=0.34;FR=0.5000;HP=2;HapScore=3;MGOF=19;MMLQ=28;MQ=56.44;NF=0;NR=4;PP=163;QD=54.1169687156;SC=CTCTCTCTCTCTCTGTGTGTG;SbPval=1.0;Source=Platypus;TC=17;TCF=4;TCR=13;TR=4;WE=76579443;WS=76579409;set=Platypus	GT:AD:AF:DP	0/1:13,4:0.24:17
chr11	76637651	rs4379869	G	A	1278.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:233,85:0.27:318
chr11	76637680	rs4479014	G	A	1346.77	.	AC=1;AF=0.500;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	0/1:243,90:0.27:333
chr11	76637730	rs4604914	C	G	1333.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:189,78:0.29:267
chr11	76637785	rs4457775	G	A	886.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:86,49:0.36:135
chr11	76668478	rs4945125	C	T	93.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.065;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.61;ReadPosRankSum=-0.778;SOR=0.465;set=HC	GT:AD:AF:DP	0/1:19,7:0.27:26
chr11	76687399	rs1517909	A	C	301.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:40,19:0.32:59
chr11	76687448	rs1517908	A	C	100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.260;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=7.091;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.36;ReadPosRankSum=-0.363;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:21,9:0.30:30
chr11	76701365	rs3824889	G	T	378.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:44,20:0.31:64
chr11	76701606	rs3740767	G	A	495.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:56,27:0.33:83
chr11	76709795	rs11237053	G	A	230.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.875;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.06;ReadPosRankSum=0.683;SOR=0.764;set=HC	GT:AD:AF:DP	0/1:91,21:0.19:112
chr11	76727866	.	G	GT	225.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.178;ClippingRankSum=0.000;DP=221;ExcessHet=3.0103;FS=3.924;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=0.000;QD=1.21;ReadPosRankSum=-0.980;SOR=0.400;set=HC	GT:AD:AF:DP	0/1:146,41:0.22:187
chr11	76751541	rs11292198	CT	C	23748.73	.	AC=2;AF=1.00;AN=2;DB;DP=654;set=Intersection	GT:AD:AF:DP	1/1:0,644:1.00:644
chr11	76751584	rs11292199	CT	C	27767.73	.	AC=2;AF=1.00;AN=2;DB;DP=630;set=Intersection	GT:AD:AF:DP	1/1:0,613:1.00:613
chr11	76751587	rs34153015	G	A	28263.77	.	AC=2;AF=1.00;AN=2;DB;DP=615;set=Intersection	GT:AD:AF:DP	1/1:0,613:1.00:613
chr11	76751603	rs11292200	CT	C	26808.73	.	AC=2;AF=1.00;AN=2;DB;DP=603;set=Intersection	GT:AD:AF:DP	1/1:0,599:1.00:599
chr11	76784047	rs11825526	C	T	2011.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:31,86:0.74:117
chr11	76795839	rs12362168	A	G	3242.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:76,148:0.66:224
chr11	76799004	rs7121748	T	C	4110.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:97,195:0.67:292
chr11	76804629	rs3832735	AGTCTGTGTCTGTCAC	A	6237.73	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:85,157:0.65:242
chr11	76804647	.	CTGTGTCTGTCAT	C	2991.73	.	AC=1;AF=0.500;AN=2;DP=282;set=Intersection	GT:AD:AF:DP	0/1:187,87:0.32:274
chr11	76804729	rs57014785	G	A	5406.77	.	AC=1;AF=0.500;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	0/1:99,237:0.71:336
chr11	76814110	rs2233549	G	A	8352.77	.	AC=1;AF=0.500;AN=2;DB;DP=561;set=Intersection	GT:AD:AF:DP	0/1:183,373:0.67:556
chr11	76827223	rs11606456	G	C	3194.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:75,138:0.65:213
chr11	76827360	rs11604536	A	G	3607.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:68,160:0.70:228
chr11	76832011	rs2276031	C	T	4193.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:94,177:0.65:271
chr11	76832812	rs3819077	C	T	2274.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:48,93:0.66:141
chr11	76833200	rs2276030	A	G	289.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:14,12:0.46:26
chr11	76833763	rs59430193	G	C	910.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:27,39:0.59:66
chr11	76833819	rs61670884	G	A	326.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:15,14:0.48:29
chr11	76834712	rs875875	A	G	7745.77	.	AC=1;AF=0.500;AN=2;DB;DP=560;set=Intersection	GT:AD:AF:DP	0/1:185,369:0.67:554
chr11	76853783	rs1052030	T	C	1448.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:50,64:0.56:114
chr11	76867903	rs762666	C	T	9982.77	.	AC=1;AF=0.500;AN=2;DB;DP=675;set=Intersection	GT:AD:AF:DP	0/1:221,447:0.67:668
chr11	76868372	rs762667	T	C	4731.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr11	76870634	rs4944145	T	C	1908.77	.	AC=1;AF=0.500;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	0/1:268,110:0.29:378
chr11	76872282	rs10400219	G	A	1178.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:27,48:0.64:75
chr11	76874149	rs111580784	C	CAT	586.73	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:51,24:0.32:75
chr11	76876976	rs11374303	G	GT	1567.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr11	76885779	rs2276283	G	A	2165.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr11	76890242	rs10793239	T	C	3219.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr11	76891308	rs3831388	T	TCTGCCAAATTATTTGG	3272.73	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr11	76891585	rs1109163	G	A	2923.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:1,102:0.99:103
chr11	76891661	rs1109162	A	G	432.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr11	76892943	rs7117606	A	G	1152.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr11	76893280	rs57741157	A	AG	2377.73	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr11	76893401	rs2276287	G	A	1099.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr11	76893731	rs112227803	G	GA	965.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr11	76894235	rs948972	G	C	2827.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr11	76895770	rs143953991	GGGAGGCGGGGACACCAGGGCCT	G	6219.76	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:2,151:0.99:153
chr11	76901273	rs2276286	C	T	1085.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr11	76901623	rs55637648	T	TGCTGGGGCCTGGAGC	3966.73	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr11	76901648	rs7947922	C	G	4476.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr11	76901927	rs2276285	C	T	8444.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr11	76904945	rs10899359	A	G	1260.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr11	76905604	rs1109977	G	T	4838.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr11	76905725	rs948958	C	T	652.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr11	76910766	rs7927472	C	T	8208.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chr11	76912406	rs12292189	A	C	1639.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:41,72:0.64:113
chr11	76912636	rs2276288	A	T	6346.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr11	76916424	rs11237121	A	G	1989.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr11	76917220	rs2276293	A	G	8285.77	.	AC=1;AF=0.500;AN=2;DB;DP=607;set=Intersection	GT:AD:AF:DP	0/1:228,373:0.62:601
chr11	76918322	rs2276291	T	C	1453.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:43,64:0.60:107
chr11	76918505	rs76159522	C	T	1837.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:37,81:0.69:118
chr11	76919478	rs948962	C	A	2317.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:47,105:0.69:152
chr11	76919619	rs948961	G	A	1926.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:33,81:0.71:114
chr11	76923188	rs73497658	C	A	3261.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:98,147:0.60:245
chr11	76924130	rs2276289	A	T	92.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.080;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.89;ReadPosRankSum=-0.745;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:40,9:0.18:49
chr11	76925075	rs948959	G	T	4393.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr11	76927876	rs142202405	ATTC	A	154.73	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:6,5:0.45:11
chr11	76928149	rs2282576	A	G	4833.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:2,180:0.99:182
chr11	76928438	rs73497674	C	A	379.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr11	76944015	rs4945161	G	A	559.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:83,33:0.28:116
chr11	76954788	rs34784710	T	TA	1551.73	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:156,60:0.28:216
chr11	76954812	rs11237145	T	C	1450.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:185,85:0.31:270
chr11	76954833	rs11237146	G	A	1639.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:209,97:0.32:306
chr11	76979465	rs1618188	A	C	4423.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:98,196:0.67:294
chr11	76979550	rs2729772	T	C	5756.77	.	AC=1;AF=0.500;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	0/1:139,257:0.65:396
chr11	76979889	rs1621624	T	C	675.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:15,25:0.62:40
chr11	76979900	rs1613357	C	G	783.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:17,28:0.62:45
chr11	76980743	rs1620915	T	C	1567.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.020;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.79;ReadPosRankSum=1.398;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:40,66:0.62:106
chr11	76987186	rs73499559	T	C	3463.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:97,165:0.63:262
chr11	77051683	rs2725832	G	C	715.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:98,42:0.30:140
chr11	77060169	rs34167967	C	CA	262.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.310;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.06;ReadPosRankSum=0.073;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:8,21:0.72:29
chr11	77069746	rs2250647	A	G	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.196;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.25;ReadPosRankSum=-0.093;SOR=0.090;set=HC	GT:AD:AF:DP	0/1:12,3:0.20:15
chr11	77069790	rs2250639	G	A	480.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:38,24:0.39:62
chr11	77090211	rs562939	T	C	2627.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr11	77314503	rs2032395	A	G	526.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:32,22:0.41:54
chr11	77335982	rs2013296	C	A	3887.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr11	77389020	rs12286317	T	C	3066.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:67,129:0.66:196
chr11	77389238	.	CTTT	C,CT	2258.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=2.274;ClippingRankSum=0.000;DP=176;ExcessHet=3.0103;FS=10.758;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.06;MQRankSum=0.000;QD=21.11;ReadPosRankSum=-0.774;SOR=2.237;set=HC	GT:AD:AF:DP	1/2:14,35,58:0.33,0.54:107
chr11	77394600	rs7925289	G	A	619.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.233;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=2.248;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.99;ReadPosRankSum=-0.254;SOR=1.688;set=HC	GT:AD:AF:DP	0/1:7,24:0.77:31
chr11	77409745	rs201359081	T	A	1342.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:149,72:0.33:221
chr11	77409832	rs10899399	C	T	912.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:14,37:0.73:51
chr11	77531810	rs10751277	T	G	1099.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr11	77553638	rs585721	T	C	1652.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:57,77:0.57:134
chr11	77583376	rs588217	G	A	1433.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:35,67:0.66:102
chr11	77587973	rs616354	T	C	467.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:69,30:0.30:99
chr11	77595642	rs608389	A	G	1656.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:58,73:0.56:131
chr11	77595717	rs658398	C	T	3982.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:119,195:0.62:314
chr11	77605501	rs1793336	T	C	1568.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr11	77611597	.	C	CT	220.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.138;ClippingRankSum=0.000;DP=357;ExcessHet=3.0103;FS=1.853;MLEAC=1;MLEAF=0.500;MQ=59.79;MQRankSum=0.075;QD=0.65;ReadPosRankSum=0.688;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:283,58:0.17:341
chr11	77614770	rs2276349	T	G	1218.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.100;ClippingRankSum=0.000;DB;DP=256;ExcessHet=3.0103;FS=1.746;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=-1.555;QD=4.91;ReadPosRankSum=-1.049;SOR=0.821;set=HC	GT:AD:AF:DP	0/1:176,72:0.29:248
chr11	77629053	rs145073695	C	T	503.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:18,24:0.57:42
chr11	77629132	rs60400274	A	AT	3424.73	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr11	77635882	rs7119720	A	C	615.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:19,30:0.61:49
chr11	77639466	rs11607043	A	G	2024.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:148,90:0.38:238
chr11	77639511	rs11607479	T	A	1026.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:99,44:0.31:143
chr11	77652420	rs112337042	C	T	461.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:14,21:0.60:35
chr11	77671217	rs72939500	A	G	507.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:16,23:0.59:39
chr11	77671281	rs12796422	A	G	1159.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:91,58:0.39:149
chr11	77671544	rs2305317	T	C	1168.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:24,46:0.66:70
chr11	77672189	rs11370501	T	TA,TAA	1475.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.547;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=1.054;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=13.54;ReadPosRankSum=-0.439;SOR=0.869;set=HC	GT:AD:AF:DP	1/2:21,43,45:0.39,0.41:109
chr11	77674421	rs200349657	C	A	413.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.853;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=4.337;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=21.78;ReadPosRankSum=0.826;SOR=1.308;set=HC	GT:AD:AF:DP	1/1:1,18:0.95:19
chr11	77692775	rs17825404	G	T	430.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:16,19:0.54:35
chr11	77692785	rs201089096	TTTTATTTA	T	294.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:14,14:0.50:28
chr11	77698524	rs7938133	C	T	2859.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr11	77698651	rs6592756	T	C	5441.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr11	77702033	rs2276441	T	A	818.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:1,29:0.97:30
chr11	77734001	rs11237360	G	C	283.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.468;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.87;ReadPosRankSum=0.069;SOR=0.320;set=HC	GT:AD:AF:DP	0/1:23,9:0.28:32
chr11	77734007	rs11237361	C	T	284.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.979;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.14;ReadPosRankSum=0.039;SOR=0.829;set=HC	GT:AD:AF:DP	0/1:25,10:0.29:35
chr11	77734209	rs11237362	T	C	1926.77	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:232,109:0.32:341
chr11	77749617	rs10793277	G	A	365.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr11	77775466	rs545869	C	G	1872.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr11	77790653	rs534418	T	C	1264.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr11	77790785	rs61740896	G	T	2367.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:80,112:0.58:192
chr11	77790863	rs499799	C	G	4638.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr11	77811990	rs1263505	T	C	2883.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr11	77813941	rs640016	T	C	109.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.47;MQRankSum=-0.967;QD=10.98;ReadPosRankSum=0.405;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:4,6:0.60:10
chr11	77813997	rs35218171	CA	C	261.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.956;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.49;MQRankSum=0.612;QD=12.46;ReadPosRankSum=-0.092;SOR=0.307;set=HC	GT:AD:AF:DP	1/1:2,19:0.90:21
chr11	77820670	rs1783515	T	C	1683.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.222;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.31;ReadPosRankSum=0.358;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:20,44:0.69:64
chr11	77820673	rs1789032	T	C	1633.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.702;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.66;ReadPosRankSum=-0.743;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:16,41:0.72:57
chr11	77823557	rs624350	G	A	443.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:30,20:0.40:50
chr11	77823608	rs73501230	A	G	1921.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:39,89:0.70:128
chr11	77824907	.	G	GAAA	816.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.962;ClippingRankSum=0.000;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=1.762;QD=10.08;ReadPosRankSum=1.234;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:43,38:0.47:81
chr11	77825064	rs572693	A	G	6632.77	.	AC=1;AF=0.500;AN=2;DB;DP=465;set=Intersection	GT:AD:AF:DP	0/1:149,303:0.67:452
chr11	77825275	rs10899440	A	G	1442.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:126,72:0.36:198
chr11	77825508	rs678277	A	G	536.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:22,23:0.51:45
chr11	77825642	rs653721	A	G	1150.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.57;SOR=0.829;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr11	77825697	rs653368	C	T	996.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:26,47:0.64:73
chr11	77825757	rs60666410	A	C	955.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:30,44:0.59:74
chr11	77832076	rs518624	T	A	1937.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr11	77834994	rs498278	G	A	1007.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:24,41:0.63:65
chr11	77835278	rs73501260	G	T	3105.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:64,137:0.68:201
chr11	77838373	rs59662312	TA	T	666.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:5,42:0.89:47
chr11	77849615	rs139001497	C	A	1007.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:17,36:0.68:53
chr11	77850517	rs10793289	C	A	3534.77	.	AC=1;AF=0.500;AN=2;DB;DP=633;set=Intersection	GT:AD:AF:DP	0/1:420,206:0.33:626
chr11	77884782	rs230661	C	T	4413.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:2,158:0.99:160
chr11	77920457	rs2256051	G	A	2613.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:51,108:0.68:159
chr11	77920563	rs2510045	G	T	7816.77	.	AC=1;AF=0.500;AN=2;DB;DP=527;set=Intersection	GT:AD:AF:DP	0/1:179,343:0.66:522
chr11	77920863	rs2512527	C	A	6898.77	.	AC=1;AF=0.500;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	0/1:97,296:0.75:393
chr11	77920930	rs2511188	A	G	3929.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.258;ClippingRankSum=0.000;DB;DP=223;ExcessHet=3.0103;FS=1.211;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.62;ReadPosRankSum=0.104;SOR=0.847;set=HC	GT:AD:AF:DP	0/1:59,164:0.74:223
chr11	77921527	rs2512526	G	C	15497.77	.	AC=2;AF=1.00;AN=2;DB;DP=573;set=Intersection	GT:AD:AF:DP	1/1:1,566:1.00:567
chr11	77924544	rs2450139	G	A	414.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:20,17:0.46:37
chr11	77924607	rs901105	A	C	1122.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:40,50:0.56:90
chr11	77924656	rs72075084	TTCTAAG	T	3890.73	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:65,100:0.61:165
chr11	77924870	rs2450138	C	T	1429.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:48,63:0.57:111
chr11	77930345	rs2450122	T	C	2506.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:59,112:0.65:171
chr11	77930499	rs901104	G	A	2729.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:62,122:0.66:184
chr11	77931346	rs901103	C	T	749.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:21,33:0.61:54
chr11	77936064	rs1385601	A	C	139.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr11	77936166	rs1385600	A	G	1460.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:48,70:0.59:118
chr11	77937800	rs2248407	G	A	4114.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:109,175:0.62:284
chr11	78204073	rs66546995	CACAGAT	C	4008.73	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr11	78204299	rs56279811	T	TA	743.73	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:65,37:0.36:102
chr11	78204380	rs4474465	C	T	33.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:19,4:0.17:23
chr11	78277277	rs10751296	A	G	799.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:97,47:0.33:144
chr11	78279790	rs10501429	T	G	2830.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr11	78369402	rs114114492	C	T	6150.77	.	AC=1;AF=0.500;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	0/1:147,256:0.64:403
chr11	78372536	rs2277277	G	A	745.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:72,41:0.36:113
chr11	78433599	rs482605	G	A	315.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:11,14:0.56:25
chr11	78443235	rs1790557	C	T	364.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr11	78443586	rs17826919	G	A	639.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:58,36:0.38:94
chr11	78489793	rs1573527	C	A	1663.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.387;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=6.165;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.24;ReadPosRankSum=0.222;SOR=0.334;set=HC	GT:AD:AF:DP	0/1:100,48:0.32:148
chr11	78489798	rs1573528	C	A	1675.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.358;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=5.084;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.23;ReadPosRankSum=-0.620;SOR=0.351;set=HC	GT:AD:AF:DP	0/1:90,47:0.34:137
chr11	78498022	rs11237621	C	T	3180.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:76,140:0.65:216
chr11	78516320	.	T	TCTCCCCACCCTCCACACCCCACCCCTCATTCTTCCCCACCCCCACTCCTCCTCCACCCACCCTTC	1210.73	.	AC=2;AF=1.00;AN=2;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=242.15;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr11	78567367	rs505093	T	C	464.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr11	78602525	rs10736817	C	A	465.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:24,20:0.45:44
chr11	78776192	rs7130258	T	C	962.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr11	82560312	rs10792653	T	G	1029.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:96,53:0.36:149
chr11	82560858	rs10736757	A	G	333.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:14,15:0.52:29
chr11	82561156	rs57878596	A	AAT	293.73	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:4,10:0.71:14
chr11	82561661	rs10792655	T	C	249.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:25,13:0.34:38
chr11	82595975	rs6592087	T	A	1942.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:187,108:0.37:295
chr11	82641156	rs117847476	CA	TG	1104.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;JOINED;set=Intersection	GT:AD:AF:DP	0/1:41,30:0.42:71
chr11	82643760	rs7947780	G	T	2410.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.457;ClippingRankSum=0.000;DB;DP=412;ExcessHet=3.0103;FS=2.595;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.88;ReadPosRankSum=-0.614;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:270,140:0.34:410
chr11	82644904	rs7130899	G	A	1773.77	.	AC=1;AF=0.500;AN=2;DB;DP=502;set=Intersection	GT:AD:AF:DP	0/1:375,121:0.24:496
chr11	82704967	rs3793986	CA	AT	550.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;JOINED;set=Intersection	GT:AD:AF:DP	0/1:28,16:0.36:44
chr11	82752734	rs34023989	TA	T	244.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.979;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.06;ReadPosRankSum=1.069;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:84,35:0.29:119
chr11	82921538	rs553484	C	T	442.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:78,26:0.25:104
chr11	82959338	rs71463157	TACAC	T	63.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.046;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=2.682;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.77;ReadPosRankSum=-0.609;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:19,4:0.17:23
chr11	83180169	rs11464149	C	CA	129.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.756;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=4.888;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.000;QD=0.91;ReadPosRankSum=0.968;SOR=1.280;set=HC	GT:AD:AF:DP	0/1:113,29:0.20:142
chr11	83585289	rs144508115	G	GGGAAGGAAGGAAGGAGAGAGGGAA	827.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.457;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=63.17;MQRankSum=1.454;QD=30.66;ReadPosRankSum=0.631;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:10,17:0.63:27
chr11	83810113	rs3750917	T	G	2194.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr11	83878075	rs1869472	G	A	4040.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr11	83962251	rs7933566	A	G	973.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr11	84822798	rs601375	T	G	2475.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.34;SOR=1.439;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr11	84822808	rs349058	T	G	418.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.815;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.87;ReadPosRankSum=0.204;SOR=0.841;set=HC	GT:AD:AF:DP	0/1:41,20:0.33:61
chr11	85339542	rs575050	G	T	98.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.816;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.05;ReadPosRankSum=-1.766;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:9,5:0.36:14
chr11	85346865	rs58671332	CT	C	119.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.117;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=3.469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.92;ReadPosRankSum=0.722;SOR=1.375;set=HC	GT:AD:AF:DP	0/1:24,17:0.41:41
chr11	85366762	rs2196168	A	G	2776.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:63,120:0.66:183
chr11	85374467	rs71274435	G	GA	304.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.338;ClippingRankSum=0.000;DB;DP=352;ExcessHet=3.0103;FS=1.227;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=2.648;QD=0.92;ReadPosRankSum=1.178;SOR=0.579;set=HC	GT:AD:AF:DP	0/1:264,67:0.20:331
chr11	85418591	rs3069561	AACAG	A	7615.73	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr11	85419193	rs290197	C	T	2340.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.26;SOR=1.031;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr11	85435001	rs34653849	T	TA	1124.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:1,48:0.98:49
chr11	85435730	rs550404	C	T	9019.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:0,333:1.00:333
chr11	85436352	rs641393	G	A	6888.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr11	85436394	rs556669	T	C	5179.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr11	85436500	rs580459	T	C	4294.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr11	85436699	rs598346	A	G	9555.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:0,362:1.00:362
chr11	85436868	rs597480	G	C	8014.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr11	85437896	rs491867	A	G	11861.77	.	AC=2;AF=1.00;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	1/1:0,448:1.00:448
chr11	85438710	rs61908775	T	C	3219.77	.	AC=1;AF=0.500;AN=2;DB;DP=564;set=Intersection	GT:AD:AF:DP	0/1:374,183:0.33:557
chr11	85447611	rs680498	T	C	4401.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr11	85456703	rs647912	T	C	3093.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:1,110:0.99:111
chr11	85622218	.	TAAA	T	59.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.239;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.14;ReadPosRankSum=-0.852;SOR=0.193;set=HC	GT:AD:AF:DP	0/1:15,4:0.21:19
chr11	85671702	rs618679	A	C	2391.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr11	85692181	rs76719109	A	C	8410.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:3,326:0.99:329
chr11	85692342	rs2508688	A	C	1952.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr11	85714288	rs7951988	T	C	3469.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr11	85718641	rs10792821	T	C	539.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:40,26:0.39:66
chr11	85718663	rs10751133	A	C	281.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.414;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=1.295;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.00;ReadPosRankSum=-0.549;SOR=0.383;set=HC	GT:AD:AF:DP	0/1:31,16:0.34:47
chr11	85725937	rs592297	C	T	2545.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr11	85737129	rs545213	T	C	86.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr11	85737502	rs541674	A	G	914.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr11	85966177	rs7950735	G	T	800.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:26,37:0.59:63
chr11	85967709	rs10792842	G	A	261.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:5,11:0.69:16
chr11	85968623	rs974144	C	T	1779.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:29,79:0.73:108
chr11	85975481	rs35685239	A	ATATT	321.73	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chr11	85977117	rs10898460	G	A	255.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:9,11:0.55:20
chr11	85979636	rs72285136	CGT	C	947.73	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:17,40:0.70:57
chr11	86013361	rs291241	A	G	502.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:79,33:0.29:112
chr11	86017658	rs291247	A	T	389.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	86037696	rs12295985	T	A	785.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:24,33:0.58:57
chr11	86037733	rs11419370	G	GC	1121.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;MQ=60.36;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr11	86098680	rs292109	T	C	981.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.328;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=2.740;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.68;ReadPosRankSum=0.194;SOR=0.506;set=HC	GT:AD:AF:DP	0/1:153,57:0.27:210
chr11	86098732	rs11234627	G	A	512.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:85,31:0.27:116
chr11	86111700	rs12272824	A	T	1367.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.324;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=2.845;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.96;ReadPosRankSum=1.408;SOR=0.411;set=HC	GT:AD:AF:DP	0/1:38,60:0.61:98
chr11	86119396	rs4412777	G	A	544.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr11	86123467	rs3741006	G	A	2997.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:65,129:0.66:194
chr11	86133784	rs1056194	C	T	8338.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr11	86153911	rs7548	G	A	2809.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:63,124:0.66:187
chr11	86157998	rs4944580	T	C	1885.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr11	86161147	rs4944581	A	C	2728.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr11	86161388	rs1042780	C	G	6733.77	.	AC=1;AF=0.500;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	0/1:137,305:0.69:442
chr11	86175193	rs11234662	A	G	7702.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr11	86175300	rs605251	G	A	3722.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr11	86198596	rs2279048	A	G	1026.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr11	86208897	rs609848	A	G	1491.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr11	86267678	rs4943943	G	A	4139.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:120,193:0.62:313
chr11	86270684	rs34249558	C	T	679.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:10,26:0.72:36
chr11	86519925	.	C	CGTGTGT	1192.73	.	AC=1;AF=0.500;AN=2;DP=102;set=Intersection	GT:AD:AF:DP	0/1:26,39:0.60:65
chr11	86650282	rs4631906	T	C	1117.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr11	86663296	rs61735303	G	A	5117.77	.	AC=1;AF=0.500;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	0/1:119,224:0.65:343
chr11	86666031	rs61735304	G	A	8610.77	.	AC=1;AF=0.500;AN=2;DB;DP=600;set=Intersection	GT:AD:AF:DP	0/1:209,388:0.65:597
chr11	86868361	rs59532014	GT	G	667.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.832;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.95;ReadPosRankSum=-0.534;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:39,45:0.54:84
chr11	86868466	rs79262699	A	T	1241.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:14,56:0.80:70
chr11	86868556	rs77656057	T	G	472.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:5,17:0.77:22
chr11	86889448	rs4944672	C	T	4259.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:125,194:0.61:319
chr11	86889612	rs4944673	G	A	1633.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.415;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.35;ReadPosRankSum=-0.221;SOR=0.781;set=HC	GT:AD:AF:DP	0/1:19,43:0.69:62
chr11	86889621	rs4944674	T	C	1555.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.819;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.29;ReadPosRankSum=-0.848;SOR=0.948;set=HC	GT:AD:AF:DP	0/1:17,38:0.69:55
chr11	86988314	rs10898654	C	T	53.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:7,4:0.36:11
chr11	87006776	rs10792935	G	A	311.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:39,18:0.32:57
chr11	87013273	.	C	CT	689.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.468;ClippingRankSum=0.000;DP=92;ExcessHet=3.0103;FS=1.322;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.93;ReadPosRankSum=-1.941;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:40,47:0.54:87
chr11	87013438	rs2276102	G	A	11160.77	.	AC=2;AF=1.00;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	1/1:0,419:1.00:419
chr11	87016846	.	T	TAAATAAAGAAAGAAAGAAAG	355.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.049;ClippingRankSum=-0.000;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=27.36;ReadPosRankSum=-1.142;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:8,5:0.38:13
chr11	87016861	rs199830508	T	TTC	419.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.430;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.08;ReadPosRankSum=-0.231;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:10,12:0.55:22
chr11	87029056	rs76934804	C	T	499.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:8,18:0.69:26
chr11	87032215	rs7112344	T	C	3288.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr11	87846757	rs9144	C	T	3327.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr11	87846803	rs675578	G	A	1432.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:169,82:0.33:251
chr11	87847018	rs3740925	C	T	3947.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr11	87847063	rs1027027	C	A	1669.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:36,70:0.66:106
chr11	87847209	rs116071834	G	T	3466.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:75,159:0.68:234
chr11	87908448	rs302646	A	G	7233.77	.	AC=1;AF=0.500;AN=2;DB;DP=484;set=Intersection	GT:AD:AF:DP	0/1:155,320:0.67:475
chr11	87909673	rs35854553	T	A	228.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr11	88033661	rs217116	A	G	3388.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr11	88045583	rs217086	A	G	8453.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr11	88045815	rs5793312	C	CT	1026.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr11	88059683	rs217060	G	A	806.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr11	88061405	rs580743	A	C	4463.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr11	88068052	rs217076	G	T	1726.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr11	88068329	rs217077	T	A	1061.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr11	88068358	.	C	T	260.77	.	AC=1;AF=0.500;AN=2;DP=20;set=Intersection	GT:AD:AF:DP	0/1:8,11:0.58:19
chr11	88242024	rs2941563	T	G	11479.77	.	AC=2;AF=1.00;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	1/1:0,440:1.00:440
chr11	88258689	rs4753486	C	T	577.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:18,24:0.57:42
chr11	88338165	rs3816649	G	A	1886.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr11	88645129	rs626218	T	A	4737.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr11	88911696	rs1042602	C	A	14157.77	.	AC=2;AF=1.00;AN=2;DB;DP=535;set=Intersection	GT:AD:AF:DP	1/1:0,520:1.00:520
chr11	89133449	rs317139	C	T	17289.77	.	AC=2;AF=1.00;AN=2;DB;DP=648;set=Intersection	GT:AD:AF:DP	1/1:0,646:1.00:646
chr11	89221958	rs597046	G	C	408.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr11	89223616	rs490934	C	G	3121.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr11	89223931	rs2304500	G	A	3318.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr11	89224101	rs3816123	G	T	9168.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:2,338:0.99:340
chr11	89224131	rs34495256	T	TCTC	10695.73	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr11	89224229	rs35177439	G	GT	7605.73	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr11	89224326	rs10830279	G	A	8275.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr11	89224453	rs2289125	A	C	3835.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr11	89370552	rs72971036	G	C	166.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.569;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.12;ReadPosRankSum=-2.106;SOR=0.418;set=HC	GT:AD:AF:DP	0/1:6,9:0.60:15
chr11	89370598	rs12363392	T	C	1061.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:27,47:0.64:74
chr11	89370719	rs12363079	A	G	3063.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:99,146:0.60:245
chr11	89371726	rs10765221	G	A	1044.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:60,47:0.44:107
chr11	89372210	rs7924505	C	T	1454.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:35,62:0.64:97
chr11	89372292	rs7942274	T	C	2075.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:66,91:0.58:157
chr11	89372341	rs7942295	T	G	2854.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:94,124:0.57:218
chr11	89372524	rs7945304	T	C	2007.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:48,94:0.66:142
chr11	89378138	rs2072623	C	A	994.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:39,46:0.54:85
chr11	89378269	rs11018694	C	T	4103.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:105,187:0.64:292
chr11	89392653	rs10765230	A	G	459.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:30,24:0.44:54
chr11	89392799	rs10830330	G	A	3465.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:79,157:0.67:236
chr11	89402557	rs80292557	G	T	3569.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:89,159:0.64:248
chr11	89402687	rs11018718	T	C	3073.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:52,132:0.72:184
chr11	89402728	rs11018719	A	G	1475.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:13,55:0.81:68
chr11	89403414	rs10734120	C	T	1082.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr11	89404941	rs11325465	CT	C	319.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.925;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=4.375;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.66;ReadPosRankSum=2.067;SOR=1.426;set=HC	GT:AD:AF:DP	0/1:20,28:0.58:48
chr11	89405190	rs10047486	A	G	1533.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.122;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=4.583;MLEAC=1;MLEAF=0.500;MQ=58.37;MQRankSum=1.354;QD=12.37;ReadPosRankSum=1.313;SOR=1.146;set=HC	GT:AD:AF:DP	0/1:57,67:0.54:124
chr11	89407164	rs59743058	C	CT	1123.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.209;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.46;MQRankSum=-7.071;QD=8.64;ReadPosRankSum=0.611;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:56,74:0.57:130
chr11	89407391	rs2075536	A	C	2364.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:70,103:0.60:173
chr11	89409158	rs4753234	A	G	2373.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.168;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=2.792;MLEAC=1;MLEAF=0.500;MQ=53.11;MQRankSum=-4.985;QD=28.26;ReadPosRankSum=0.212;SOR=1.788;set=HC	GT:AD:AF:DP	0/1:26,58:0.69:84
chr11	89409166	rs4753235	G	C	2563.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.195;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.90;MQRankSum=-4.854;QD=26.43;ReadPosRankSum=-0.836;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:28,69:0.71:97
chr11	89413781	rs10830339	C	G	779.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:36,34:0.49:70
chr11	89413850	rs10830340	C	T	2734.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:64,74:0.54:138
chr11	89413867	rs7128813	G	A	2709.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:68,74:0.52:142
chr11	89413975	rs10830341	C	T	684.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:29,33:0.53:62
chr11	89424716	rs2035677	A	G	5955.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:28,169:0.86:197
chr11	89424736	rs6144434	GTGTGTATATATATATATATATATA	G	3902.73	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:21,113:0.84:134
chr11	89443429	rs10830355	G	A	2456.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:49,99:0.67:148
chr11	89443808	rs11018745	A	C	4495.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:103,188:0.65:291
chr11	89443939	rs10830356	C	A	781.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:18,31:0.63:49
chr11	89444754	rs7111680	G	A	2192.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:47,99:0.68:146
chr11	89447256	rs1967075	A	G	596.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:6,21:0.78:27
chr11	89447313	rs1967074	A	G	1366.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:18,52:0.74:70
chr11	89451057	rs3881253	A	G	6082.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:92,162:0.64:254
chr11	89451071	rs3881254	C	A	5688.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:80,143:0.64:223
chr11	89531540	rs12417980	C	T	8882.77	.	AC=1;AF=0.500;AN=2;DB;DP=622;set=Intersection	GT:AD:AF:DP	0/1:224,396:0.64:620
chr11	89531801	.	CA	C	318.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.192;ClippingRankSum=0.000;DP=242;ExcessHet=3.0103;FS=2.248;MLEAC=1;MLEAF=0.500;MQ=51.87;MQRankSum=-5.501;QD=1.48;ReadPosRankSum=0.619;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:155,60:0.28:215
chr11	89771844	rs374297173	CT	C	48.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.406;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=1.952;MLEAC=1;MLEAF=0.500;MQ=44.70;MQRankSum=1.037;QD=2.71;ReadPosRankSum=0.489;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:10,8:0.44:18
chr11	89774197	rs200350663	CT	C	1477.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.638;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=0.986;MLEAC=1;MLEAF=0.500;MQ=47.88;MQRankSum=-5.029;QD=11.19;ReadPosRankSum=2.422;SOR=0.559;set=HC	GT:AD:AF:DP	0/1:26,106:0.80:132
chr11	89774236	rs74584169	C	G	589.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.601;ClippingRankSum=0.000;DB;DP=221;ExcessHet=3.0103;FS=2.012;MLEAC=1;MLEAF=0.500;MQ=47.72;MQRankSum=-4.792;QD=2.72;ReadPosRankSum=-0.302;SOR=0.531;set=HC	GT:AD:AF:DP	0/1:167,50:0.23:217
chr11	89774397	rs150273819	T	C	146.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.363;ClippingRankSum=0.000;DB;DP=239;ExcessHet=3.0103;FS=2.509;MLEAC=1;MLEAF=0.500;MQ=54.38;MQRankSum=-7.770;QD=0.61;ReadPosRankSum=-1.047;SOR=0.953;set=HC	GT:AD:AF:DP	0/1:208,31:0.13:239
chr11	89774448	rs77759231	G	A	1054.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.252;ClippingRankSum=0.000;DB;DP=434;ExcessHet=3.0103;FS=3.187;MLEAC=1;MLEAF=0.500;MQ=56.44;MQRankSum=-15.639;QD=2.46;ReadPosRankSum=-1.969;SOR=1.007;set=HC	GT:AD:AF:DP	0/1:340,89:0.21:429
chr11	89867872	rs1892887	C	T	340.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:19,17:0.47:36
chr11	89868582	rs7125969	A	G	110.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:26,8:0.24:34
chr11	89868594	rs7129238	T	G	115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.662;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=4.632;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.52;ReadPosRankSum=-0.149;SOR=0.132;set=HC	GT:AD:AF:DP	0/1:36,10:0.22:46
chr11	89868614	rs7110402	C	T	197.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.113;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=4.249;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.60;ReadPosRankSum=-1.257;SOR=0.173;set=HC	GT:AD:AF:DP	0/1:42,13:0.24:55
chr11	89868692	rs7109578	G	A	853.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.195;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=0.610;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.57;ReadPosRankSum=0.225;SOR=0.759;set=HC	GT:AD:AF:DP	0/1:134,53:0.28:187
chr11	89868755	rs10734123	G	A	1378.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:242,91:0.27:333
chr11	89880469	rs2186748	T	C	815.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:83,42:0.34:125
chr11	89883595	rs5793433	GTT	G	143.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.427;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.45;MQRankSum=1.279;QD=6.53;ReadPosRankSum=0.537;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:14,8:0.36:22
chr11	89883885	rs113877304	C	CT	125.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.085;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.97;ReadPosRankSum=0.241;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:4,5:0.56:9
chr11	89883893	rs56341659	C	T	135.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:4,5:0.56:9
chr11	89892291	rs3740810	T	G	260.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:17,13:0.43:30
chr11	89896041	rs2187316	A	G	66.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:12,4:0.25:16
chr11	89896457	rs489009	C	T	980.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:147,58:0.28:205
chr11	89902154	rs10830430	A	G	49.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.206;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.46;ReadPosRankSum=0.066;SOR=1.055;set=HC	GT:AD:AF:DP	0/1:30,4:0.12:34
chr11	89902156	rs137872752	A	C	49.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.201;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.46;ReadPosRankSum=0.066;SOR=1.055;set=HC	GT:AD:AF:DP	0/1:30,4:0.12:34
chr11	89903334	rs3758754	C	T	1004.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:147,60:0.29:207
chr11	89903405	rs3758755	G	A	858.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:53,41:0.44:94
chr11	89909096	.	ATG	A	265.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.253;ClippingRankSum=0.000;DP=85;ExcessHet=3.0103;FS=1.161;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=2.618;QD=3.80;ReadPosRankSum=-0.206;SOR=0.460;set=HC	GT:AD:AF:DP	0/1:54,16:0.23:70
chr11	89914893	rs58524552	TTAAAAA	T	233.73	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr11	89914940	rs3740814	A	C	135.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr11	89916053	rs9804494	C	G	727.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:87,38:0.30:125
chr11	89916080	rs9804632	G	C	1121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.021;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=2.132;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.37;ReadPosRankSum=0.493;SOR=0.500;set=HC	GT:AD:AF:DP	0/1:146,63:0.30:209
chr11	89935586	rs1045861	G	T	156.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:13,8:0.38:21
chr11	89936093	rs3758757	T	C	258.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.610;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.40;ReadPosRankSum=-1.210;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:55,21:0.28:76
chr11	89938615	rs36109540	AAG	A	226.73	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:10,7:0.41:17
chr11	89939448	rs1943381	G	A	492.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.162;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.47;ReadPosRankSum=-1.356;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:106,36:0.25:142
chr11	89939569	rs723715	T	C	416.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:50,25:0.33:75
chr11	89943548	rs3832739	T	TCAGA	1083.73	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:46,30:0.39:76
chr11	89946502	rs199835809	CAAA	C	595.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.239;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.480;QD=7.54;ReadPosRankSum=-0.011;SOR=0.884;set=HC	GT:AD:AF:DP	0/1:47,32:0.41:79
chr11	89948505	rs34923920	GTA	G	1661.73	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:104,49:0.32:153
chr11	89951367	rs34787918	GA	G	410.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.491;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=0.818;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.340;QD=3.60;ReadPosRankSum=0.299;SOR=0.562;set=HC	GT:AD:AF:DP	0/1:71,43:0.38:114
chr11	89951510	rs10830446	G	A	68.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:7,4:0.36:11
chr11	91545212	rs4753345	C	G	2982.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr11	92497990	rs3847524	C	G	221.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:15,9:0.38:24
chr11	92531356	rs7949157	A	G	11850.77	.	AC=2;AF=1.00;AN=2;DB;DP=451;set=Intersection	GT:AD:AF:DP	1/1:3,444:0.99:447
chr11	92532677	rs12362722	T	C	14066.77	.	AC=2;AF=1.00;AN=2;DB;DP=508;set=Intersection	GT:AD:AF:DP	1/1:0,502:1.00:502
chr11	92534442	rs3847531	A	G	14639.77	.	AC=2;AF=1.00;AN=2;DB;DP=559;set=Intersection	GT:AD:AF:DP	1/1:0,547:1.00:547
chr11	92539384	rs4753415	A	G	364.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr11	92564767	rs6483189	T	G	5232.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr11	92570812	rs11020075	TC	AA	5931.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr11	92577031	rs4753068	C	T	4892.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:1,182:0.99:183
chr11	92577070	rs4753419	T	C	7856.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:2,285:0.99:287
chr11	92590448	rs4753069	A	G	3395.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr11	92599851	rs3847553	G	A	9692.77	.	AC=2;AF=1.00;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	1/1:2,353:0.99:355
chr11	92615715	rs12224637	C	T	263.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.31;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr11	92622244	rs73560556	G	T	1063.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.277;ClippingRankSum=0.000;DB;DP=281;ExcessHet=3.0103;FS=0.551;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.87;ReadPosRankSum=0.604;SOR=0.767;set=HC	GT:AD:AF:DP	0/1:210,65:0.24:275
chr11	92623877	rs12277422	G	A	5392.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:89,230:0.72:319
chr11	92718127	rs1447350	G	C	938.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:124,54:0.30:178
chr11	92718163	rs1447351	A	G	521.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:73,30:0.29:103
chr11	92915017	rs17631593	C	T	544.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:69,28:0.29:97
chr11	93085537	rs10831029	T	G	1630.77	.	AC=1;AF=0.500;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	0/1:267,103:0.28:370
chr11	93103419	rs12282978	C	G	107.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:7,5:0.42:12
chr11	93118413	rs140986877	AG	A	187.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:9,6:0.40:15
chr11	93118415	rs61919179	G	C	196.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:9,6:0.40:15
chr11	93118515	rs3020057	G	A	1963.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr11	93122326	rs12283758	G	A	1615.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr11	93122355	rs75547341	TA	T	893.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr11	93129483	rs12288277	GA	CG	4944.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr11	93129654	rs59065050	A	G	376.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:13,16:0.55:29
chr11	93141580	rs2259633	C	A	2905.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr11	93148371	rs12290433	C	T	3475.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr11	93170909	rs375443728	T	TCC	421.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.667;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.36;ReadPosRankSum=-1.084;SOR=2.448;set=HC	GT:AD:AF:DP	0/1:3,13:0.81:16
chr11	93212161	rs2605594	A	G	13870.77	.	AC=2;AF=1.00;AN=2;DB;DP=541;set=Intersection	GT:AD:AF:DP	1/1:3,530:0.99:533
chr11	93212254	rs2658797	C	T	18851.77	.	AC=2;AF=1.00;AN=2;DB;DP=714;set=Intersection	GT:AD:AF:DP	1/1:1,710:1.00:711
chr11	93400052	rs7123801	G	A	233.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr11	93402096	rs1944101	C	A	348.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:20,19:0.49:39
chr11	93402945	rs11020474	G	A	4648.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:84,207:0.71:291
chr11	93403067	rs1954994	G	A	57.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:21,5:0.19:26
chr11	93408831	rs10831088	G	A	1167.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:124,65:0.34:189
chr11	93408958	rs35646565	C	CA	115.73	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:23,9:0.28:32
chr11	93412774	rs1944100	A	G	370.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:67,22:0.25:89
chr11	93425159	rs4753495	C	A	1351.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:154,75:0.33:229
chr11	93454831	rs59894789	GGTGT	G	1154.82	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.323;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.06;ReadPosRankSum=0.000;SOR=1.078;set=HC	GT:AD:AF:DP	0/1:16,32:0.67:48
chr11	93462607	rs7131178	A	T	401.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:72,23:0.24:95
chr11	93463145	rs200136546	A	AT	1071.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.803;ClippingRankSum=0.000;DB;DP=273;ExcessHet=3.0103;FS=0.650;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=0.000;QD=5.44;ReadPosRankSum=1.762;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:103,94:0.48:197
chr11	93463332	rs7101779	A	G	418.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:75,28:0.27:103
chr11	93463666	rs7119918	C	A	2124.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr11	93463726	rs34898352	T	TAG	489.73	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:34,15:0.31:49
chr11	93466866	rs2155248	G	T	949.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:64,44:0.41:108
chr11	93469286	rs150792429	C	T	863.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:101,48:0.32:149
chr11	93472589	rs61921279	G	A	270.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:4,10:0.71:14
chr11	93474570	rs11280945	T	TGCGTGA	10991.73	.	AC=1;AF=0.500;AN=2;DB;DP=943;set=Intersection	GT:AD:AF:DP	0/1:634,298:0.32:932
chr11	93474678	rs630648	G	C	3907.77	.	AC=1;AF=0.500;AN=2;DB;DP=619;set=Intersection	GT:AD:AF:DP	0/1:396,206:0.34:602
chr11	93474791	rs623510	G	T	682.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:76,33:0.30:109
chr11	93474827	rs631116	T	C	346.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:47,17:0.27:64
chr11	93480708	rs624856	T	C	196.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:19,8:0.30:27
chr11	93480717	rs5793654	A	ATATCTTACT	193.73	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:16,8:0.33:24
chr11	93483346	rs681321	G	A	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.352;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=3.233;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.48;ReadPosRankSum=1.150;SOR=2.419;set=HC	GT:AD:AF:DP	0/1:7,3:0.30:10
chr11	93487008	rs623993	G	A	1927.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr11	93490682	rs604414	T	A	3147.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr11	93494878	rs72097212	AAG	A	1973.73	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:107,69:0.39:176
chr11	93517874	rs7116967	C	G	2045.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:74,58:0.44:132
chr11	93517886	rs2848477	G	C	1860.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:69,50:0.42:119
chr11	93521405	rs676586	C	T	457.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:65,26:0.29:91
chr11	93527219	rs657177	T	C	10012.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	1/1:0,377:1.00:377
chr11	93527282	rs5793656	GA	G	2796.73	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr11	93529655	rs34057693	G	A	3415.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:85,152:0.64:237
chr11	93534929	.	T	TGA	212.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.608;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=1.395;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.73;ReadPosRankSum=1.154;SOR=1.004;set=HC	GT:AD:AF:DP	0/1:32,13:0.29:45
chr11	93534930	.	TTC	GAC,GAT	403	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.39;FR=0.5000,0.5000;HP=3;HapScore=2;MGOF=8;MMLQ=24;MQ=60.0;NF=26,10;NR=10,2;PP=403,96;QD=12.6796631906;SC=TCATAAAATTTTCGAATCATT;SbPval=0.59;Source=Platypus;TC=38;TCF=27;TCR=11;TR=36,12;WE=93534940;WS=93534920;set=Platypus	GT:AF:DP	0/1:0.95:38
chr11	93534930	.	TTC	GTC,T	1918.73	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=39.97;SOR=1.708;set=HC	GT:AD:AF:DP	1/2:0,35,13:0.73,0.27:48
chr11	93534931	rs34875966	T	A	783.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.358;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=1.384;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.33;ReadPosRankSum=-1.800;SOR=0.372;set=HC	GT:AD:AF:DP	0/1:13,35:0.73:48
chr11	93534990	rs655699	G	A	617.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:68,35:0.34:103
chr11	93754508	rs2511403	G	A	1373.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr11	93797619	rs1945783	A	G	7819.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chr11	93801012	rs10765650	C	T	3277.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr11	93801062	rs10765651	C	T	1146.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr11	93803717	rs1878799	C	G	2639.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr11	93806416	rs1914725	T	C	8332.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr11	93806705	rs2949862	C	T	215.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:27,11:0.29:38
chr11	93834223	rs7927016	G	A	346.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:14,15:0.52:29
chr11	93844034	rs7925817	G	T	2276.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:49,99:0.67:148
chr11	93862493	rs1138800	A	C	4296.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:114,194:0.63:308
chr11	93886838	rs7928030	G	C	818.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:21,35:0.62:56
chr11	94113288	rs3740867	C	G	4661.77	.	AC=1;AF=0.500;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	0/1:118,215:0.65:333
chr11	94129628	rs55802933	G	A	1231.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:138,67:0.33:205
chr11	94179125	rs1014666	T	C	860.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:100,49:0.33:149
chr11	94197568	rs640627	C	T	313.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:26,16:0.38:42
chr11	94203868	rs610611	A	T	8943.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:0,335:1.00:335
chr11	94209348	rs13447623	T	C	234.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:3,9:0.75:12
chr11	94212048	rs535801	C	T	394.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.631;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=2.644;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.74;ReadPosRankSum=-0.055;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:113,31:0.22:144
chr11	94212154	rs680695	A	G	219.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:42,15:0.26:57
chr11	94223855	rs608452	A	G	281.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr11	94225807	rs496797	C	T	188.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:33,14:0.30:47
chr11	94225920	rs497763	C	T	510.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.311;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=1.786;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.43;ReadPosRankSum=-0.094;SOR=0.499;set=HC	GT:AD:AF:DP	0/1:63,31:0.33:94
chr11	94229665	rs540199	A	G	163.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:11,7:0.39:18
chr11	94231257	rs2509943	C	G	1410.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:33,60:0.65:93
chr11	94245740	rs2509324	A	G	248.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:5,12:0.71:17
chr11	94250684	rs582049	A	G	365.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:14,15:0.52:29
chr11	94250709	rs582077	T	A	626.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:19,29:0.60:48
chr11	94261255	rs647484	C	G	1671.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:38,78:0.67:116
chr11	94264927	rs595672	T	A	3139.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:68,143:0.68:211
chr11	94265043	.	C	CT	513.73	.	AC=1;AF=0.500;AN=2;DP=135;set=Intersection	GT:AD:AF:DP	0/1:72,41:0.36:113
chr11	94354019	rs504010	T	C	2158.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:70,95:0.58:165
chr11	94474044	rs11300560	GT	G	5660.73	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr11	94501849	rs2915239	G	A	2795.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr11	94602414	rs11020968	C	T	3670.77	.	AC=1;AF=0.500;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	0/1:274,195:0.42:469
chr11	94696474	rs58293261	G	GA	832.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.237;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=18.51;ReadPosRankSum=-0.695;SOR=1.358;set=HC	GT:AD:AF:DP	1/1:3,42:0.93:45
chr11	94699391	rs58215154	TACACACACAC	T	1330.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=40.33;SOR=0.997;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr11	94699507	rs34805065	A	AT	4758.73	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr11	94703049	rs7107185	T	C	397.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr11	94704037	rs3737505	C	G	1944.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr11	94704092	rs4753645	T	A	7618.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.46;SOR=1.538;set=HC	GT:AD:AF:DP	1/1:0,164:1.00:164
chr11	94704092	.	TAG	AAA	2947	.	AC=2;AF=1.00;AN=2;BRF=0.48;FR=1.0000;HP=3;HapScore=1;MGOF=8;MMLQ=25;MQ=60.0;NF=80;NR=37;PP=2947;QD=20;SC=TATTTTAGAATAGCATGGTAA;SbPval=0.52;Source=Platypus;TC=126;TCF=86;TCR=40;TR=117;WE=94704102;WS=94704082;set=Platypus	GT:AD:AF:DP	1/1:9,117:0.93:126
chr11	94704094	rs4753646	G	A	7618.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.54;SOR=1.491;set=HC	GT:AD:AF:DP	1/1:0,175:1.00:175
chr11	94704689	rs3831469	A	AAC	2840.73	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:9,93:0.91:102
chr11	94730403	rs11371511	C	CA	175.73	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=19.53;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr11	94759059	rs10752685	A	G	7555.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.25;QD=27.08;SOR=0.871;set=HC	GT:AD:AF:DP	1/1:0,279:1.00:279
chr11	94800902	rs5793709	G	GC	35356.73	.	AC=2;AF=1.00;AN=2;DB;DP=967;set=Intersection	GT:AD:AF:DP	1/1:0,945:1.00:945
chr11	94823448	rs3016947	A	T	2449.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr11	94862577	rs3740861	G	T	2272.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.104;ClippingRankSum=0.000;DB;DP=459;ExcessHet=3.0103;FS=1.944;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.06;ReadPosRankSum=-0.164;SOR=0.890;set=HC	GT:AD:AF:DP	0/1:316,133:0.30:449
chr11	95509037	rs3789960	C	G	1315.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr11	95512060	rs1150360	A	G	9719.77	.	AC=2;AF=1.00;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	1/1:2,364:0.99:366
chr11	95519195	rs3748252	A	T	2153.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr11	95519506	rs3748253	G	A	3349.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr11	95520695	rs1313288	T	C	1871.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr11	95521648	rs1727165	A	G	2149.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr11	95521855	.	A	C	1534.77	.	AC=1;AF=0.500;AN=2;DP=110;set=Intersection	GT:AD:AF:DP	0/1:48,61:0.56:109
chr11	95521953	rs3748256	A	G	5801.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr11	95524067	rs12272061	G	T	2260.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr11	95528663	rs5793747	C	CT,CTT	1169.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.769;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=3.418;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=17.20;ReadPosRankSum=-2.486;SOR=0.269;set=HC	GT:AD:AF:DP	1/2:8,35,25:0.51,0.37:68
chr11	95528714	rs522536	C	T	2230.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr11	95551136	rs666398	C	T	3072.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr11	95555841	rs56284050	G	GTGCCTTTACCAGTGTGTGGATCA	2679.73	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr11	95561265	rs34100857	TA	T	726.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr11	95562205	rs35650661	C	CA	62.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.247;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=3.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.14;ReadPosRankSum=-1.148;SOR=0.124;set=HC	GT:AD:AF:DP	0/1:12,8:0.40:20
chr11	95562327	rs534488	G	A	4337.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr11	95562535	rs5793749	G	GA	303.87	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.606;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=15.99;ReadPosRankSum=0.731;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:2,17:0.89:19
chr11	95564259	rs644799	A	G	2697.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr11	95569183	rs499637	G	A	2278.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr11	95569253	rs627568	A	C	6274.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr11	95580926	rs566204	G	A	4943.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr11	95598629	rs687559	A	G	5044.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr11	95657111	rs3824874	T	G	3713.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr11	95825374	.	TTGCTGCTGCTGC	T,TTGC	5248.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=377;set=Intersection	GT:AF:DP	1/2:0.15,0.79:258
chr11	95825797	rs7931870	A	G	1434.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:132,73:0.36:205
chr11	96092376	rs10765801	C	T	985.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr11	96106661	rs11021560	C	G	331.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:8,14:0.64:22
chr11	96116444	rs10831519	T	C	875.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:80,46:0.37:126
chr11	96123734	rs3842515	T	TG	461.73	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:16,16:0.50:32
chr11	96125435	rs10545425	CTT	C	398.73	.	AC=1;AF=0.500;AN=2;DB;DP=24;MQ=60.45;set=Intersection	GT:AD:AF:DP	0/1:9,12:0.57:21
chr11	99427091	rs2047166	A	G	1106.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr11	99428929	rs11375374	C	CT	2921.73	.	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.56;SOR=1.532;set=HC	GT:AD:AF:DP	1/1:0,124:1.00:124
chr11	99690428	rs7125822	T	G	1899.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.190;ClippingRankSum=0.000;DB;DP=425;ExcessHet=3.0103;FS=9.424;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.52;ReadPosRankSum=-2.163;SOR=1.279;set=HC	GT:AD:AF:DP	0/1:301,119:0.28:420
chr11	99690461	rs10893933	A	G	822.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.411;ClippingRankSum=0.000;DB;DP=335;ExcessHet=3.0103;FS=42.450;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.49;ReadPosRankSum=-7.758;SOR=1.848;set=HC	GT:AD:AF:DP	0/1:265,66:0.20:331
chr11	99932146	rs3758923	A	T	780.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:70,40:0.36:110
chr11	99941322	rs2059014	C	T	3610.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:1,140:0.99:141
chr11	100061827	rs3031278	G	GA	1249.73	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:24,67:0.74:91
chr11	100168289	rs1944178	C	T	7045.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr11	100168320	rs75986029	T	TC	14589.73	.	AC=2;AF=1.00;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	1/1:0,383:1.00:383
chr11	100169829	rs1944180	A	G	1637.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr11	100226773	rs10894795	A	G	1364.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:196,86:0.30:282
chr11	100641311	.	A	C	215.77	.	AC=1;AF=0.500;AN=2;DP=15;set=Intersection	GT:AD:AF:DP	0/1:5,10:0.67:15
chr11	100730213	rs646392	G	A	3155.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr11	100804088	rs626529	A	G	2469.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr11	100807130	rs581921	T	C	6329.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr11	100811574	rs35159175	CAT	C	3694.73	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr11	100811690	rs661973	G	T	567.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr11	100812338	rs151209547	A	AAC	772.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=51.52;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr11	100812342	rs370937549	CACTCTACCCTAT	C	805.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.57;QD=42.41;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr11	100812344	.	CTCTACCCTAT	C	2965	.	AC=2;AF=1.00;AN=2;BRF=0.32;FR=1.0000;HP=1;HapScore=2;MGOF=12;MMLQ=24;MQ=60.83;NF=3;NR=5;PP=2965;QD=20;SC=TTCTAAGACACTCTACCCTAT;SbPval=0.62;Source=Platypus;TC=8;TCF=3;TCR=5;TR=8;WE=100812361;WS=100812330;set=Platypus	GT:AD:AF:DP	1/1:0,8:1.00:8
chr11	100814409	rs619066	G	A	3420.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr11	100814609	rs618155	G	T	1221.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr11	100819305	rs633967	T	C	640.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr11	100819392	rs504081	A	G	374.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr11	100819430	rs482050	A	G	296.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr11	100819447	rs481991	C	A	238.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr11	100820725	rs694556	A	T	1883.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr11	100827326	rs151243237	AAATAT	A	15117.73	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:0,339:1.00:339
chr11	100830440	rs7950832	T	C	4903.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:2,170:0.99:172
chr11	100830579	rs6590829	G	A	8714.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chr11	100830693	rs563460	T	C	1333.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr11	100922404	rs578029	A	T	168.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr11	100933598	rs11571221	G	GAATGA	231.82	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr11	100996730	rs2020875	G	A	1259.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:115,64:0.36:179
chr11	100998105	rs11571153	C	T	376.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:18,21:0.54:39
chr11	100998623	rs1379130	G	A	3295.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:46,144:0.76:190
chr11	100999838	rs11437764	A	AG	2157.73	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr11	101323856	rs59743346	TAAG	T	3113.73	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:153,86:0.36:239
chr11	101325970	rs7105083	G	A	46.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.370;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.60;ReadPosRankSum=-1.476;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:9,4:0.31:13
chr11	101342958	rs61743044	G	A	364.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:44,22:0.33:66
chr11	101344177	rs12362848	G	A	574.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.308;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.56;ReadPosRankSum=2.634;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:89,37:0.29:126
chr11	101346892	rs76277340	A	C	32.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.473;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.26;ReadPosRankSum=-0.158;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:22,4:0.15:26
chr11	101347093	rs12366144	A	G	632.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:100,40:0.29:140
chr11	101354032	rs11826302	G	A	202.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.083;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=1.925;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.17;ReadPosRankSum=-0.570;SOR=0.277;set=HC	GT:AD:AF:DP	0/1:50,14:0.22:64
chr11	101362164	rs71056610	CA	C	139.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.095;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.82;ReadPosRankSum=0.576;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:15,14:0.48:29
chr11	101374626	rs4542378	G	A	1465.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr11	101375549	rs10501986	T	C	2636.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr11	101454192	rs3802829	G	A	1439.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:217,82:0.27:299
chr11	101771248	rs3858418	G	A	11277.77	.	AC=2;AF=1.00;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	1/1:0,426:1.00:426
chr11	101771381	rs3858419	G	A	1522.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:23,62:0.73:85
chr11	101775663	rs1661409	G	A	1326.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:51,60:0.54:111
chr11	101778710	rs1661410	A	G	406.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:19,21:0.53:40
chr11	101786014	rs117883580	G	A	2314.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:37,100:0.73:137
chr11	101818728	rs11225080	A	G	2192.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:71,99:0.58:170
chr11	101826949	rs930469	T	C	15973.77	.	AC=1;AF=0.500;AN=2;DB;DP=1123;set=Intersection	GT:AD:AF:DP	0/1:400,710:0.64:1110
chr11	101832478	rs7926728	G	T	1682.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr11	101833266	.	TAAA	T	5031.73	.	AC=1;AF=0.500;AN=2;DP=207;set=Intersection	GT:AD:AF:DP	0/1:72,130:0.64:202
chr11	101833644	rs7109233	C	T	4252.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr11	101848990	rs3740931	A	G	1279.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:28,54:0.66:82
chr11	101857758	rs6590942	G	A	908.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr11	101863706	rs1274901	C	T	721.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:16,31:0.66:47
chr11	101868415	rs1783742	C	T	4697.77	.	AC=1;AF=0.500;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	0/1:167,217:0.57:384
chr11	101918327	rs12804542	A	G	6018.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr11	101984718	rs2033082	A	G	885.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr11	102080325	.	G	GA	99.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.638;ClippingRankSum=0.000;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.506;QD=1.63;ReadPosRankSum=-0.206;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:46,15:0.25:61
chr11	102199608	rs60157696	TA	T	222.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.029;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.55;ReadPosRankSum=1.543;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:17,17:0.50:34
chr11	102199610	rs59068554	TA	T	195.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.838;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=3.079;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.76;ReadPosRankSum=2.419;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:18,16:0.47:34
chr11	102207024	rs7124969	C	T	666.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:15,30:0.67:45
chr11	102207851	rs1055088	G	A	836.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:19,37:0.66:56
chr11	102233746	rs2509319	T	C	118.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.919;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=1.556;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.76;ReadPosRankSum=-0.083;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:34,9:0.21:43
chr11	102269679	rs655139	T	G	176.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.807;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=8.523;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.21;ReadPosRankSum=0.300;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:29,13:0.31:42
chr11	102272460	rs139978855	AT	A	89.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.227;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=1.127;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.57;ReadPosRankSum=0.267;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:41,16:0.28:57
chr11	102323160	rs2436036	C	T	3161.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:89,142:0.61:231
chr11	102449650	rs7934921	T	A	1109.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:23,45:0.66:68
chr11	102449951	rs1940054	A	C	428.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:6,16:0.73:22
chr11	102465226	rs1711437	C	T	56.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:5,4:0.44:9
chr11	102465502	rs144425539	CAA	C	413.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.201;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.55;ReadPosRankSum=-0.889;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:5,20:0.80:25
chr11	102477377	rs1784424	G	T	1847.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:45,87:0.66:132
chr11	102477395	rs1784423	A	G	2022.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:47,87:0.65:134
chr11	102477515	rs3781787	T	C	388.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:43,22:0.34:65
chr11	102477556	rs3781788	C	T	192.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:20,10:0.33:30
chr11	102482738	rs1711416	G	A	1489.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:31,57:0.65:88
chr11	102495745	rs2509023	C	T	260.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr11	102495998	rs2245803	T	G	2994.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr11	102563739	rs1276289	C	T	3707.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:89,171:0.66:260
chr11	102567207	rs1276286	T	A	4619.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:85,212:0.71:297
chr11	102567626	rs1940480	C	G	2451.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:60,106:0.64:166
chr11	102573396	rs2701994	C	G	1231.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr11	102573451	rs3809017	T	C	2203.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:46,91:0.66:137
chr11	102576358	rs2846707	T	C	4203.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr11	102576375	rs1939015	G	A	4794.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr11	102576585	rs57861748	C	CTT	138.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.009;ClippingRankSum=-0.000;DB;DP=60;ExcessHet=3.0103;FS=2.596;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=-0.000;QD=6.94;ReadPosRankSum=0.775;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:9,11:0.55:20
chr11	102584023	rs1939018	T	A	11791.77	.	AC=2;AF=1.00;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	1/1:1,440:1.00:441
chr11	102584466	rs3832755	G	GT	4603.73	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:1,206:1.00:207
chr11	102584607	rs2509013	T	C	6713.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr11	102585493	rs36223553	TTATATATATA	T,TTA	711.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=37.46;SOR=2.948;set=HC	GT:AD:AF:DP	1/2:0,11,8:0.58,0.42:19
chr11	102587154	.	GAA	G	111.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.257;ClippingRankSum=0.000;DP=85;ExcessHet=3.0103;FS=1.337;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.54;ReadPosRankSum=1.464;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:32,12:0.27:44
chr11	102592049	rs113713628	T	TTG,TTGTG	2911.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=83;set=Intersection	GT:AF:DP	1/2:0.23,0.74:78
chr11	102593042	rs948218	T	A	683.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr11	102593053	rs1940474	G	T	934.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr11	102593248	rs1940475	T	C	14131.77	.	AC=2;AF=1.00;AN=2;DB;DP=524;set=Intersection	GT:AD:AF:DP	1/1:0,518:1.00:518
chr11	102594376	rs6590983	A	C	4715.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr11	102594427	rs6590984	T	C	4638.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr11	102595492	rs3765620	G	A	6171.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr11	102595666	rs2155052	C	G	3365.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr11	102623115	rs531335	A	G	661.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:8,25:0.76:33
chr11	102641452	rs470171	G	C	1554.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:162,77:0.32:239
chr11	102642716	rs17860997	A	AT	1156.73	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:94,43:0.31:137
chr11	102647310	rs470154	T	G	1064.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:63,54:0.46:117
chr11	102649543	rs470277	T	A	226.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:16,11:0.41:27
chr11	102661080	rs2239008	G	A	311.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:10,14:0.58:24
chr11	102661099	rs470215	T	C	246.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:22,15:0.41:37
chr11	102661595	rs470747	A	G	1145.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:98,56:0.36:154
chr11	102661665	rs1938901	G	A	564.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:16,21:0.57:37
chr11	102663476	rs17884110	A	AG	2190.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.052;ClippingRankSum=0.000;DB;DP=343;ExcessHet=3.0103;FS=3.773;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=3.289;QD=6.56;ReadPosRankSum=-0.757;SOR=0.484;set=HC	GT:AD:AF:DP	0/1:261,73:0.22:334
chr11	102663482	rs1144391	A	T	2161.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.025;ClippingRankSum=0.000;DB;DP=326;ExcessHet=3.0103;FS=4.736;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=1.905;QD=6.71;ReadPosRankSum=-0.625;SOR=0.451;set=HC	GT:AD:AF:DP	0/1:252,70:0.22:322
chr11	102663503	rs7125062	T	C	4636.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:51,191:0.79:242
chr11	102666043	rs491152	A	G	6306.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr11	102666316	rs470558	T	C	3874.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr11	102668603	.	CAA	C,CA	651.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=46;set=Intersection	GT:AF:DP	1/2:0.34,0.57:44
chr11	102668702	rs470358	T	C	834.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:91,49:0.35:140
chr11	102707305	rs569444	G	A	2856.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:94,128:0.58:222
chr11	102707339	rs639752	C	A	2454.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:84,116:0.58:200
chr11	102707366	rs563096	A	T	1972.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:71,95:0.57:166
chr11	102707914	rs575027	A	G	1486.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:27,58:0.68:85
chr11	102709425	rs520540	A	G	4023.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:77,178:0.70:255
chr11	102709522	rs646910	T	A	762.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:19,30:0.61:49
chr11	102710083	rs3025094	G	A	558.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:7,21:0.75:28
chr11	102711338	rs591058	T	C	639.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:13,30:0.70:43
chr11	102713046	rs3020919	C	T	1679.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:38,73:0.66:111
chr11	102713465	rs602128	A	G	6944.77	.	AC=1;AF=0.500;AN=2;DB;DP=510;set=Intersection	GT:AD:AF:DP	0/1:181,322:0.64:503
chr11	102713620	rs679620	T	C	5570.77	.	AC=1;AF=0.500;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	0/1:124,261:0.68:385
chr11	102713777	rs678815	G	C	341.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:13,13:0.50:26
chr11	102735103	rs476185	A	G	4145.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr11	102737192	rs28381684	A	T	5530.77	.	AC=1;AF=0.500;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	0/1:145,252:0.63:397
chr11	102737276	rs28381683	CTTTCCAT	C	4710.73	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:65,119:0.65:184
chr11	102737944	rs28381681	CA	C	388.73	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:51,29:0.36:80
chr11	102738075	rs17368582	T	C	5749.77	.	AC=1;AF=0.500;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	0/1:116,268:0.70:384
chr11	102738793	rs5794199	G	GT	10438.73	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr11	102738795	rs5003690	G	T	10447.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;MQ=60.09;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr11	102742761	rs17368659	G	T	1322.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:26,52:0.67:78
chr11	102745469	rs28360358	GCAAA	G	1743.73	.	AC=1;AF=0.500;AN=2;DB;DP=78;MQ=60.14;set=Intersection	GT:AD:AF:DP	0/1:25,46:0.65:71
chr11	102745791	rs2276109	T	C	346.81	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:2,13:0.87:15
chr11	102815970	rs61571704	CA	C	104.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.304;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.24;ReadPosRankSum=-0.776;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:8,12:0.60:20
chr11	102824826	rs478927	T	C	221.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:32,13:0.29:45
chr11	102825091	rs640198	T	G	1420.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:127,74:0.37:201
chr11	102954096	rs139214495	CAACATAA	C	1858.73	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:27,48:0.64:75
chr11	102960146	rs200511043	G	GT	63.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.349;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=3.011;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.89;ReadPosRankSum=2.166;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:58,14:0.19:72
chr11	102985018	rs2245404	A	G	223.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:2,9:0.82:11
chr11	102991516	rs116888435	A	G	414.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:12,18:0.60:30
chr11	102996095	.	CTT	C	58.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.540;ClippingRankSum=-0.000;DP=30;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.92;ReadPosRankSum=-1.924;SOR=0.086;set=HC	GT:AD:AF:DP	0/1:9,6:0.40:15
chr11	103004929	rs2450918	C	G	375.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.458;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=5.478;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.39;ReadPosRankSum=0.261;SOR=0.082;set=HC	GT:AD:AF:DP	0/1:24,16:0.40:40
chr11	103019443	rs2514000	C	G	155.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:19,10:0.34:29
chr11	103026040	rs5794210	CT	C	328.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.691;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=6.589;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.22;ReadPosRankSum=0.302;SOR=0.094;set=HC	GT:AD:AF:DP	0/1:16,24:0.60:40
chr11	103029373	rs688094	G	A	139.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chr11	103029516	rs688906	A	G	423.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:37,20:0.35:57
chr11	103033914	rs657936	A	T	1115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.870;ClippingRankSum=0.000;DB;DP=305;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.74;ReadPosRankSum=-0.421;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:223,75:0.25:298
chr11	103044038	rs11225578	A	G	741.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:63,40:0.39:103
chr11	103047007	rs585692	C	A	1430.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:107,76:0.42:183
chr11	103050028	rs632672	A	G	393.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:52,21:0.29:73
chr11	103057048	rs658804	A	G	2458.77	.	AC=1;AF=0.500;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	0/1:253,135:0.35:388
chr11	103058126	rs586592	C	T	2862.77	.	AC=1;AF=0.500;AN=2;DB;DP=505;set=Intersection	GT:AD:AF:DP	0/1:331,167:0.34:498
chr11	103074349	rs631712	C	T	137.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.338;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=1.708;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.75;ReadPosRankSum=-1.055;SOR=0.358;set=HC	GT:AD:AF:DP	0/1:20,9:0.31:29
chr11	103082590	rs589623	G	A	767.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:68,42:0.38:110
chr11	103086381	rs679691	G	T	277.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:28,15:0.35:43
chr11	103086399	rs78873690	G	GTA	498.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.042;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=1.640;QD=8.75;ReadPosRankSum=0.178;SOR=0.360;set=HC	GT:AD:AF:DP	0/1:41,16:0.28:57
chr11	103086725	rs635193	C	G	207.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:39,12:0.24:51
chr11	103091237	rs636510	A	G	174.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:15,8:0.35:23
chr11	103091546	rs670464	G	A	732.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:72,39:0.35:111
chr11	103092945	rs654061	A	G	186.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:16,8:0.33:24
chr11	103092968	rs669940	C	T	118.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:7,4:0.36:11
chr11	103104930	rs1784259	C	A	1625.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:151,85:0.36:236
chr11	103123999	rs648387	G	T	1541.73	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:64,85:0.57:149
chr11	103126296	rs633970	G	A	208.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:7,10:0.59:17
chr11	103128510	rs650238	C	T	2254.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:53,93:0.64:146
chr11	103153863	rs598845	A	G	1583.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:38,71:0.65:109
chr11	103174035	rs12362743	T	G	1702.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:65,77:0.54:142
chr11	103187169	rs72975657	T	C	345.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:7,14:0.67:21
chr11	103192039	rs313407	T	C	129.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:17,9:0.35:26
chr11	103229027	rs2566913	T	C	8559.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr11	103229110	rs2671333	G	A	11751.77	.	AC=2;AF=1.00;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	1/1:0,437:1.00:437
chr11	103229173	rs2514408	A	C	9088.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	1/1:0,352:1.00:352
chr11	103229188	rs2512128	G	C	8263.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr11	103229238	rs2512129	G	A	4003.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr11	103325908	rs11225812	C	T	3418.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:126,165:0.57:291
chr11	103327166	rs7121138	G	T	1773.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:36,73:0.67:109
chr11	103345030	rs11225822	A	C	317.85	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:2,14:0.88:16
chr11	103780455	rs10791649	A	G	739.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:116,47:0.29:163
chr11	103780610	rs4754997	C	T	651.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.463;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=2.483;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.56;ReadPosRankSum=-0.480;SOR=0.956;set=HC	GT:AD:AF:DP	0/1:104,39:0.27:143
chr11	103780695	rs4754998	G	A	85.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.577;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.60;ReadPosRankSum=-0.225;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:26,7:0.21:33
chr11	103814453	rs78383143	G	A	475.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:48,23:0.32:71
chr11	103818344	rs11226083	G	C	1449.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.697;ClippingRankSum=0.000;DB;DP=328;ExcessHet=3.0103;FS=1.466;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.45;ReadPosRankSum=0.557;SOR=0.791;set=HC	GT:AD:AF:DP	0/1:234,92:0.28:326
chr11	103818395	rs35045740	T	C	1225.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.808;ClippingRankSum=0.000;DB;DP=290;ExcessHet=3.0103;FS=5.371;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.24;ReadPosRankSum=-0.152;SOR=0.494;set=HC	GT:AD:AF:DP	0/1:210,79:0.27:289
chr11	103907956	rs7102675	G	A	17369.77	.	AC=2;AF=1.00;AN=2;DB;DP=640;set=Intersection	GT:AD:AF:DP	1/1:0,636:1.00:636
chr11	103908735	rs1052313	G	A	6607.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr11	104757836	rs5794352	T	TA	585.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	104758035	rs484438	G	A	2098.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr11	104761013	rs635846	T	G	1529.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr11	104761100	rs513131	T	C	6968.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr11	104761206	rs647039	C	T	6858.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr11	104761271	rs693506	A	C	3257.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:1,109:0.99:110
chr11	104762228	rs544216	G	A	966.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr11	104763117	rs497116	G	A	7832.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr11	104763716	rs617983	A	G	9062.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:0,326:1.00:326
chr11	104768000	rs693001	G	A	16102.77	.	AC=2;AF=1.00;AN=2;DB;DP=610;set=Intersection	GT:AD:AF:DP	1/1:0,605:1.00:605
chr11	104768098	rs555367	T	C	9631.77	.	AC=2;AF=1.00;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	1/1:0,347:1.00:347
chr11	104768909	rs650940	T	C	2146.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr11	104817679	.	A	G	344.77	.	AC=1;AF=0.500;AN=2;DP=56;set=Intersection	GT:AD:AF:DP	0/1:37,17:0.31:54
chr11	104819327	rs9507	T	C	5030.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr11	104819542	rs5794358	G	GAAAC,GAAACAGAC	2423.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=63;set=Intersection	GT:AF:DP	1/1:1.00:55
chr11	104819544	.	GAG	CAC	832	.	AC=2;AF=1.00;AN=2;BRF=0.42;FR=1.0000;HP=2;HapScore=1;MGOF=5;MMLQ=27;MQ=61.81;NF=6;NR=26;PP=832;QD=27.6708710894;SC=CACACAGAGAGAGACACACAC;SbPval=0.64;Source=Platypus;TC=39;TCF=8;TCR=31;TR=32;WE=104819554;WS=104819530;set=Platypus	GT:AD:AF:DP	1/1:7,32:0.82:39
chr11	104819544	rs33955446	G	GACAC	1367.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.242;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.64;MQRankSum=0.000;QD=39.08;ReadPosRankSum=-0.427;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:2,33:0.94:35
chr11	104819546	rs5004914	G	C	2315.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.64;QD=45.41;SOR=2.170;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr11	104820163	rs649739	A	C	3180.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr11	104872981	rs544211	C	T	3774.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:2,135:0.99:137
chr11	104877717	rs2282658	C	G	1014.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:33,39:0.54:72
chr11	104877803	rs2282657	A	G	3452.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:106,146:0.58:252
chr11	104877927	rs507879	T	C	5231.77	.	AC=1;AF=0.500;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	0/1:143,239:0.63:382
chr11	104878040	rs112680102	G	GT	70.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.173;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=1.028;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=2.328;QD=0.54;ReadPosRankSum=0.615;SOR=0.871;set=HC	GT:AD:AF:DP	0/1:108,23:0.18:131
chr11	104896375	rs2509648	G	T	379.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr11	104971210	rs1792771	C	T	4950.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:91,212:0.70:303
chr11	104971233	rs34491690	C	T	6450.77	.	AC=1;AF=0.500;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	0/1:127,274:0.68:401
chr11	104972190	rs1792773	C	T	8339.77	.	AC=1;AF=0.500;AN=2;DB;DP=618;set=Intersection	GT:AD:AF:DP	0/1:227,387:0.63:614
chr11	105836923	rs632549	G	A	1457.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr11	105836960	rs1939826	A	G	423.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:12,17:0.59:29
chr11	105842916	rs559190	C	T	639.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr11	105844923	rs509512	C	A	633.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:47,31:0.40:78
chr11	105929469	.	G	GT	108.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.146;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.36;ReadPosRankSum=-0.650;SOR=0.501;set=HC	GT:AD:AF:DP	0/1:33,13:0.28:46
chr11	105965214	rs72977065	T	G	214.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:10,9:0.47:19
chr11	106407855	rs10630927	A	AAT	310.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.209;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.42;ReadPosRankSum=0.535;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:17,16:0.48:33
chr11	106408031	rs11279851	TCAAATG	T	4401.73	.	AC=1;AF=0.500;AN=2;DB;DP=479;set=Intersection	GT:AD:AF:DP	0/1:339,130:0.28:469
chr11	106408071	rs1791468	C	T	1543.77	.	AC=1;AF=0.500;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	0/1:306,106:0.26:412
chr11	106408212	rs2852371	A	G	121.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:29,8:0.22:37
chr11	106647137	rs139329770	A	ACTCAAACT	882.73	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:57,24:0.30:81
chr11	106680653	rs141065153	CAATTT	C	256.73	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:28,9:0.24:37
chr11	106695514	.	AT	A	216.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.554;ClippingRankSum=0.000;DP=196;ExcessHet=3.0103;FS=2.402;MLEAC=1;MLEAF=0.500;MQ=55.93;MQRankSum=-10.332;QD=1.13;ReadPosRankSum=-1.962;SOR=0.478;set=HC	GT:AD:AF:DP	0/1:148,44:0.23:192
chr11	106695697	rs77535954	A	G	1456.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:122,74:0.38:196
chr11	106697172	rs61678754	T	C	1376.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:31,60:0.66:91
chr11	106807443	rs11331245	AT	A	3372.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;MQ=60.04;set=Intersection	GT:AD:AF:DP	0/1:35,219:0.86:254
chr11	106849520	rs10890630	T	C	458.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.217;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=2.818;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.41;ReadPosRankSum=0.522;SOR=0.445;set=HC	GT:AD:AF:DP	0/1:73,31:0.30:104
chr11	106888608	rs3107973	G	A	1328.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:51,61:0.54:112
chr11	107197536	rs630782	C	T	333.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:26,16:0.38:42
chr11	107197606	rs630693	G	C	1012.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:100,51:0.34:151
chr11	107197640	rs3758911	T	C	3742.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:90,161:0.64:251
chr11	107205426	rs10789620	C	T	197.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:8,9:0.53:17
chr11	107216388	rs474364	C	T	577.79	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.925;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=32.10;ReadPosRankSum=1.618;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:1,17:0.94:18
chr11	107216404	rs72990438	C	T	187.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr11	107224225	rs4576794	G	A	2211.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:59,96:0.62:155
chr11	107224415	rs35543671	A	G	4973.77	.	AC=1;AF=0.500;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	0/1:149,228:0.60:377
chr11	107286893	rs11439588	T	TG	579.73	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:37,20:0.35:57
chr11	107287139	rs520729	T	A	59.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:10,4:0.29:14
chr11	107304372	rs140789981	G	A	2289.77	.	AC=1;AF=0.500;AN=2;DB;DP=500;set=Intersection	GT:AD:AF:DP	0/1:344,142:0.29:486
chr11	107312175	rs11212239	G	A	313.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:39,19:0.33:58
chr11	107326340	rs618078	C	A	1822.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:169,96:0.36:265
chr11	107328544	rs2276271	G	A	2075.77	.	AC=1;AF=0.500;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	0/1:257,121:0.32:378
chr11	107381533	rs655009	G	A	990.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:34,44:0.56:78
chr11	107381765	rs654093	G	A	3594.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:83,160:0.66:243
chr11	107402995	rs589788	A	T	1664.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:39,70:0.64:109
chr11	107403202	rs5794554	TAG	T	2757.73	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:45,70:0.61:115
chr11	107420530	rs645056	A	G	14195.77	.	AC=2;AF=1.00;AN=2;DB;DP=540;set=Intersection	GT:AD:AF:DP	1/1:0,535:1.00:535
chr11	107422434	rs1269387	T	A	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.732;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.75;ReadPosRankSum=1.383;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:7,2:0.22:9
chr11	107422437	rs60431822	T	A	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.75;ReadPosRankSum=1.383;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:7,2:0.22:9
chr11	107422440	rs71488261	T	A	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.75;ReadPosRankSum=1.383;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:7,2:0.22:9
chr11	107462977	rs5794560	G	GT	843.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr11	107502123	rs10539761	ACCC	A	1525.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr11	107524968	rs17669207	T	C	1756.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.208;ClippingRankSum=0.000;DB;DP=378;ExcessHet=3.0103;FS=3.008;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.67;ReadPosRankSum=-0.177;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:264,112:0.30:376
chr11	107578721	rs583362	C	G	483.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.419;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=0.768;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.84;ReadPosRankSum=-0.035;SOR=0.832;set=HC	GT:AD:AF:DP	0/1:93,33:0.26:126
chr11	107643102	rs28695914	T	A	176.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr11	107643289	rs60511673	T	G	800.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.02;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr11	107646894	rs34492014	C	CA	424.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.286;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.89;ReadPosRankSum=1.251;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:10,29:0.74:39
chr11	107646918	rs484427	G	A	2025.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr11	107650473	rs650686	G	A	2243.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr11	107650505	rs519422	C	G	1948.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr11	107652394	rs11381266	GT	G	181.84	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.988;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.77;MQRankSum=0.577;QD=13.99;ReadPosRankSum=-1.209;SOR=0.223;set=HC	GT:AD:AF:DP	1/1:1,12:0.92:13
chr11	107663631	rs148577551	TTTTCTTTC	T	775.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.592;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=3.027;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.262;QD=14.10;ReadPosRankSum=0.238;SOR=0.326;set=HC	GT:AD:AF:DP	0/1:33,22:0.40:55
chr11	107673628	rs556153	T	C	1290.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr11	107675566	rs495836	C	T	2740.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr11	107677399	rs34066069	C	CA	11906.73	.	AC=2;AF=1.00;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	1/1:0,407:1.00:407
chr11	107686741	rs371223301	TAC	T	256.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.685;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=4.218;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.55;ReadPosRankSum=0.281;SOR=1.656;set=HC	GT:AD:AF:DP	0/1:20,14:0.41:34
chr11	107729205	rs11603925	C	G	469.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:37,20:0.35:57
chr11	107729561	rs3741065	T	C	349.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:39,20:0.34:59
chr11	107904512	.	C	CT	180.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.253;ClippingRankSum=0.000;DP=178;ExcessHet=3.0103;FS=2.634;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.09;ReadPosRankSum=0.565;SOR=0.459;set=HC	GT:AD:AF:DP	0/1:135,31:0.19:166
chr11	107904646	rs10890800	C	T	1616.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:204,94:0.32:298
chr11	107917087	rs7117111	A	G	891.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.328;ClippingRankSum=0.000;DB;DP=212;ExcessHet=3.0103;FS=0.583;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.53;ReadPosRankSum=0.966;SOR=0.762;set=HC	GT:AD:AF:DP	0/1:141,56:0.28:197
chr11	107925327	rs3847562	C	T	95.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.18;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr11	107925729	rs7125285	G	A	468.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:8,19:0.70:27
chr11	107965262	rs12792042	G	A	293.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:29,17:0.37:46
chr11	107969300	rs11302777	GT	G	280.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.919;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=1.566;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.02;ReadPosRankSum=-0.812;SOR=0.352;set=HC	GT:AD:AF:DP	0/1:12,28:0.70:40
chr11	107992312	rs3741054	C	G	3181.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:84,149:0.64:233
chr11	108004798	rs7931681	A	C	192.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:22,11:0.33:33
chr11	108004927	rs201199156	CT	C	1073.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.647;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=1.715;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.733;QD=8.80;ReadPosRankSum=0.137;SOR=0.521;set=HC	GT:AD:AF:DP	0/1:39,83:0.68:122
chr11	108006047	rs10890817	A	C	896.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.597;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=2.978;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.37;ReadPosRankSum=-0.981;SOR=0.968;set=HC	GT:AD:AF:DP	0/1:152,53:0.26:205
chr11	108009660	rs35188041	C	A	4134.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:118,192:0.62:310
chr11	108012510	rs34420529	A	AAAGT	488.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;MQ=60.83;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr11	108013006	rs55854804	T	A	1136.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:9,41:0.82:50
chr11	108044091	rs4144901	T	A	657.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:91,38:0.29:129
chr11	108055813	rs142719662	T	A	852.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:22,34:0.61:56
chr11	108058769	rs371572857	CT	C	112.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.114;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=1.342;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.34;ReadPosRankSum=1.769;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:58,26:0.31:84
chr11	108061379	rs659584	C	T	871.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr11	108068954	rs683312	T	C	379.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:57,25:0.30:82
chr11	108079315	rs34033921	T	TA	39.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.226;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.51;MQRankSum=1.532;QD=2.21;ReadPosRankSum=1.505;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:12,6:0.33:18
chr11	108114661	.	AT	A	42.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.774;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.85;ReadPosRankSum=2.655;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:38,12:0.24:50
chr11	108121410	.	CT	C	89.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.469;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;FS=6.167;MLEAC=1;MLEAF=0.500;MQ=60.48;MQRankSum=1.957;QD=2.14;ReadPosRankSum=-0.512;SOR=0.136;set=HC	GT:AD:AF:DP	0/1:27,15:0.36:42
chr11	108127089	rs3218692	A	C	1708.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:52,72:0.58:124
chr11	108127101	rs3218705	A	C	1328.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:43,56:0.57:99
chr11	108141955	rs373881770	CT	C	351.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.299;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=1.898;QD=2.91;ReadPosRankSum=-1.311;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:75,46:0.38:121
chr11	108183167	rs659243	A	G	2303.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr11	108188266	rs58978479	AT	A	66.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.647;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=0.941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.49;ReadPosRankSum=0.656;SOR=0.885;set=HC	GT:AD:AF:DP	0/1:106,30:0.22:136
chr11	108195976	rs11366542	GT	G	497.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.006;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=2.129;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=0.521;QD=12.76;ReadPosRankSum=0.040;SOR=1.426;set=HC	GT:AD:AF:DP	1/1:4,35:0.90:39
chr11	108224697	rs179108	G	A	2076.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr11	108276091	rs9667658	C	G	1350.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr11	108352160	rs3901850	C	T	1450.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr11	108353018	rs3765632	C	A	508.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	108380335	rs1943382	T	C	10579.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	1/1:0,383:1.00:383
chr11	108381247	rs2640779	C	T	3116.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:74,130:0.64:204
chr11	108384207	rs2846412	C	T	4435.77	.	AC=1;AF=0.500;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	0/1:123,198:0.62:321
chr11	108409784	rs2640785	T	A	5780.77	.	AC=1;AF=0.500;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	0/1:158,264:0.63:422
chr11	108546468	rs11212754	A	G	484.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:71,32:0.31:103
chr11	108549179	rs2306117	T	G	539.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.997;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=1.946;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.66;ReadPosRankSum=-2.058;SOR=1.033;set=HC	GT:AD:AF:DP	0/1:53,28:0.35:81
chr11	108577360	rs3214898	T	TA	212.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.275;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=3.975;MLEAC=1;MLEAF=0.500;MQ=60.37;MQRankSum=1.660;QD=7.60;ReadPosRankSum=-1.961;SOR=0.197;set=HC	GT:AD:AF:DP	0/1:20,8:0.29:28
chr11	108577646	rs61914000	C	T	135.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:30,10:0.25:40
chr11	108594237	rs11212765	G	A	728.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:62,36:0.37:98
chr11	109964079	rs7116552	C	A	2426.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr11	109964089	rs11395531	T	TG	2903.73	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr11	110023628	rs665013	C	T	2708.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr11	110033860	rs11213287	T	C	1677.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr11	110050502	rs11213291	C	T	2986.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr11	110050628	.	C	CTT	432.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.637;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.82;MQRankSum=-0.272;QD=14.92;ReadPosRankSum=2.468;SOR=1.230;set=HC	GT:AD:AF:DP	0/1:3,26:0.90:29
chr11	110103924	rs10450619	A	C	455.84	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:1,16:0.94:17
chr11	110118364	rs17110988	A	C	2055.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr11	110126197	rs2306085	A	G	2713.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr11	110128994	rs10789756	C	G	1442.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.76;SOR=0.841;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr11	110150486	rs61003001	TA	T	452.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:2,28:0.93:30
chr11	110306748	rs35520653	G	GT	964.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.408;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.92;ReadPosRankSum=2.231;SOR=1.127;set=HC	GT:AD:AF:DP	1/1:2,49:0.96:51
chr11	110333030	rs3831392	A	AAT	5788.73	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:3,152:0.98:155
chr11	110452999	rs2008772	C	A	2634.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.66;SOR=1.903;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr11	110453009	rs4079590	G	A	2786.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.59;SOR=1.508;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr11	110453250	rs4142632	C	G	1473.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr11	110462986	rs10891146	G	C	743.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	110479839	rs59458030	ATTT	A	3862.73	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr11	110697305	rs120434	C	G	4920.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr11	110697444	rs120436	G	A	1011.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr11	111152263	rs5794734	ACT	A	4889.73	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr11	111156836	rs3087967	T	C	3269.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:1,126:0.99:127
chr11	111167206	rs5794737	CA	C	225.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.217;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=0.791;QD=9.81;ReadPosRankSum=-1.382;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:4,19:0.83:23
chr11	111179054	rs3087587	A	G	1947.77	.	AC=1;AF=0.500;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	0/1:283,120:0.30:403
chr11	111229470	rs12282082	T	C	568.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:79,34:0.30:113
chr11	111230529	rs4938496	A	G	2126.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:45,97:0.68:142
chr11	111249785	rs11213863	C	G	331.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:31,19:0.38:50
chr11	111249819	rs10789825	A	G	674.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:50,36:0.42:86
chr11	111325007	rs61896868	C	T	2372.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:54,107:0.66:161
chr11	111326284	rs7925584	T	C	1885.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr11	111327213	rs11213913	G	A	7359.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr11	111327261	rs12270679	C	A	2858.77	.	AC=1;AF=0.500;AN=2;DB;DP=492;set=Intersection	GT:AD:AF:DP	0/1:326,160:0.33:486
chr11	111338328	rs12803406	A	G	1296.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:133,74:0.36:207
chr11	111338478	rs651882	T	C	1177.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:12,43:0.78:55
chr11	111368047	rs489078	G	T	5546.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr11	111383789	rs11606481	C	T	2259.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:37,105:0.74:142
chr11	111420364	rs634679	A	G	3854.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr11	111422217	rs663763	C	T	955.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:17,38:0.69:55
chr11	111487106	rs571462	C	G	2031.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:42,88:0.68:130
chr11	111575634	rs36106790	C	CT	147.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.292;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.48;ReadPosRankSum=-0.376;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:21,12:0.36:33
chr11	111623088	rs4936675	T	A	15096.77	.	AC=2;AF=1.00;AN=2;DB;DP=577;set=Intersection	GT:AD:AF:DP	1/1:0,573:1.00:573
chr11	111625085	rs4936678	C	T	56.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:6,4:0.40:10
chr11	111635655	rs7106104	T	C	484.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.622;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=0.870;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.25;ReadPosRankSum=0.158;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:85,29:0.25:114
chr11	111636203	rs45555631	G	T	788.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:8,29:0.78:37
chr11	111636627	rs643506	T	G	10081.77	.	AC=2;AF=1.00;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	1/1:0,358:1.00:358
chr11	111636863	.	G	A	2235.77	.	AC=1;AF=0.500;AN=2;DP=122;set=Intersection	GT:AD:AF:DP	0/1:30,89:0.75:119
chr11	111637117	rs139691367	T	TCCCGCCCCGCGCCCAGGC	3658.73	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr11	111659476	rs2554996	C	A	299.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr11	111724133	rs10502151	C	T	2875.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:56,128:0.70:184
chr11	111742145	rs10708475	CG	C	11263.73	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr11	111747427	rs634983	C	T	978.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:27,40:0.60:67
chr11	111749265	rs3802845	C	T	3971.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:110,179:0.62:289
chr11	111749349	rs611010	A	T	9082.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:0,343:1.00:343
chr11	111780104	rs68187136	TA	T	148.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.090;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=1.792;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.51;ReadPosRankSum=0.692;SOR=1.230;set=HC	GT:AD:AF:DP	0/1:11,16:0.59:27
chr11	111783767	.	A	G	1461.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.472;ClippingRankSum=0.000;DP=328;ExcessHet=3.0103;FS=0.566;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.81;ReadPosRankSum=-0.957;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:216,88:0.29:304
chr11	111795085	rs7124407	C	G	1461.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.090;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=4.762;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.72;ReadPosRankSum=-0.582;SOR=0.314;set=HC	GT:AD:AF:DP	0/1:24,69:0.74:93
chr11	111795148	rs7124433	C	G	2183.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:44,99:0.69:143
chr11	111800488	rs5794769	A	AT	1370.73	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:78,89:0.53:167
chr11	111848361	rs11364849	AG	A	2765.73	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr11	111848531	rs10891303	C	T	1683.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.881;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=1.515;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.58;ReadPosRankSum=-1.054;SOR=0.559;set=HC	GT:AD:AF:DP	0/1:40,84:0.68:124
chr11	111853106	rs11455434	G	GC	8608.73	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr11	111866442	rs3839945	GAC	G	187.73	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:9,6:0.40:15
chr11	111889635	rs650461	C	G	632.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:17,26:0.60:43
chr11	111889654	rs476581	C	T	713.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:16,32:0.67:48
chr11	111896324	rs2303436	C	T	5517.77	.	AC=1;AF=0.500;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	0/1:92,240:0.72:332
chr11	111897028	rs5794771	G	GT	107.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.328;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=3.369;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.337;QD=2.00;ReadPosRankSum=-0.379;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:37,17:0.31:54
chr11	111903995	rs478941	T	C	255.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:4,10:0.71:14
chr11	111908162	rs627441	T	C	4151.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:94,194:0.67:288
chr11	111909819	rs6589260	C	A	908.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:12,34:0.74:46
chr11	111915765	rs11455845	C	CA,CAA	1827.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.101;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=2.211;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=15.76;ReadPosRankSum=1.243;SOR=1.079;set=HC	GT:AD:AF:DP	1/2:18,57,41:0.49,0.35:116
chr11	111916001	rs11335731	AG	A	4269.73	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr11	111916647	rs10891314	G	A	1448.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:28,66:0.70:94
chr11	111930576	rs3882890	C	T	628.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:27,27:0.50:54
chr11	111933088	rs10891315	A	G	1083.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:29,46:0.61:75
chr11	111956989	rs14396	C	A	6712.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr11	111957143	rs487201	T	C	4010.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr11	111957819	rs7121782	G	T	1467.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:27,68:0.72:95
chr11	111963860	rs592626	A	G	301.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr11	112020916	rs549908	T	G	438.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:42,24:0.36:66
chr11	112025915	rs4988359	T	C	231.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:7,10:0.59:17
chr11	112025916	rs360721	G	C	143.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:10,7:0.41:17
chr11	112040027	rs360712	A	G	1781.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:166,97:0.37:263
chr11	112041293	rs200180264	A	G	608.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:54,32:0.37:86
chr11	112064431	rs7105056	T	C	6900.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr11	112065434	rs10891338	T	C	9875.77	.	AC=2;AF=1.00;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	1/1:0,388:1.00:388
chr11	112071294	rs12420140	G	A	1223.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:30,47:0.61:77
chr11	112071570	rs7948124	AA	TT	4078.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr11	112084617	.	T	TACA	546.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.362;ClippingRankSum=0.000;DP=133;ExcessHet=3.0103;FS=19.243;MLEAC=1;MLEAF=0.500;MQ=58.12;MQRankSum=-6.989;QD=4.71;ReadPosRankSum=-0.760;SOR=3.866;set=HC	GT:AD:AF:DP	0/1:95,21:0.18:116
chr11	112084618	.	G	GATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAA	548.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.956;ClippingRankSum=0.000;DP=118;ExcessHet=3.0103;FS=16.600;MLEAC=1;MLEAF=0.500;MQ=58.47;MQRankSum=-7.353;QD=4.81;ReadPosRankSum=-0.806;SOR=3.680;set=HC	GT:AD:AF:DP	0/1:95,19:0.17:114
chr11	112087101	rs2676377	T	A	2530.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:50,108:0.68:158
chr11	112088499	rs2217401	A	C	4713.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr11	112099294	.	C	CT	90.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.131;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=1.255;QD=2.11;ReadPosRankSum=-1.787;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:29,14:0.33:43
chr11	112123095	rs2564872	A	G	3670.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:93,170:0.65:263
chr11	112130987	rs2518361	G	C	805.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:8,29:0.78:37
chr11	112832307	rs11381910	G	GA	10238.73	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr11	112832339	rs11284059	GC	G	11448.73	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr11	112832353	rs7105734	T	C	11045.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.83;SOR=0.806;set=HC	GT:AD:AF:DP	1/1:0,241:1.00:241
chr11	112832358	rs6589347	T	C	10528.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.98;SOR=0.832;set=HC	GT:AD:AF:DP	1/1:0,229:1.00:229
chr11	112832391	.	AT	A	125.73	.	AC=1;AF=0.500;AN=2;DP=177;set=Intersection	GT:AD:AF:DP	0/1:110,33:0.23:143
chr11	112832405	rs73002342	T	A	2023.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.264;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=4.734;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.96;ReadPosRankSum=-0.893;SOR=1.159;set=HC	GT:AD:AF:DP	0/1:45,100:0.69:145
chr11	112832405	.	T	TA	1919	.	AC=1;AF=0.500;AN=2;BRF=0.4;FR=0.5000;HP=13;HapScore=1;MGOF=95;MMLQ=27;MQ=59.76;NF=3;NR=89;PP=1919;QD=20.902173913;SC=TTTTTTTTTTTAATTCTCAAT;SbPval=0.44;Source=Platypus;TC=112;TCF=3;TCR=109;TR=92;WE=112832413;WS=112832379;set=Platypus	GT:AD:AF:DP	1/0:20,92:0.82:112
chr11	112984037	rs1245087	G	A	1062.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr11	113073054	rs112087457	G	GT	643.73	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:86,45:0.34:131
chr11	113078756	rs12574998	T	C	236.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:29,14:0.33:43
chr11	113103996	rs584427	T	G	582.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:48,32:0.40:80
chr11	113105907	rs646558	C	A	2221.77	.	AC=1;AF=0.500;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	0/1:268,128:0.32:396
chr11	113111665	rs2303378	G	A	3404.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:73,137:0.65:210
chr11	113113515	rs635596	G	A	9534.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:0,353:1.00:353
chr11	113143557	rs2156485	C	T	860.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:67,38:0.36:105
chr11	113186879	rs7130072	C	T	285.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:33,18:0.35:51
chr11	113194168	rs723077	A	C	670.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:88,39:0.31:127
chr11	113195595	rs948178	A	G	239.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:20,11:0.35:31
chr11	113200558	rs7928978	A	G	538.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.711;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=1.591;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.05;ReadPosRankSum=0.096;SOR=0.530;set=HC	GT:AD:AF:DP	0/1:99,34:0.26:133
chr11	113200709	rs2303380	G	A	1120.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.082;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=3.507;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.75;ReadPosRankSum=0.886;SOR=0.476;set=HC	GT:AD:AF:DP	0/1:130,65:0.33:195
chr11	113211329	rs2288159	G	T	666.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.699;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=1.357;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.37;ReadPosRankSum=-0.770;SOR=0.555;set=HC	GT:AD:AF:DP	0/1:151,47:0.24:198
chr11	113212553	rs6589372	T	C	2020.77	.	AC=1;AF=0.500;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	0/1:272,121:0.31:393
chr11	113230600	rs2276070	C	T	211.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.108;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=5.721;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.71;ReadPosRankSum=-0.317;SOR=1.511;set=HC	GT:AD:AF:DP	0/1:62,16:0.21:78
chr11	113233059	rs2298490	G	A	439.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.112;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=0.779;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.66;ReadPosRankSum=-0.883;SOR=0.604;set=HC	GT:AD:AF:DP	0/1:90,30:0.25:120
chr11	113234466	rs713233	G	A	426.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.463;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.56;ReadPosRankSum=-0.266;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:11,12:0.52:23
chr11	113234471	rs719803	A	G	394.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.688;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.45;ReadPosRankSum=0.549;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:13,11:0.46:24
chr11	113234775	rs719804	A	G	868.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:22,36:0.62:58
chr11	113235419	rs2298489	A	G	1964.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr11	113235864	rs7949242	A	G	276.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:22,14:0.39:36
chr11	113239082	rs10891540	G	A	10794.77	.	AC=1;AF=0.500;AN=2;DB;DP=759;set=Intersection	GT:AD:AF:DP	0/1:245,501:0.67:746
chr11	113239111	rs117852026	C	T	3672.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.168;ClippingRankSum=0.000;DB;DP=742;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.02;ReadPosRankSum=-1.599;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:507,224:0.31:731
chr11	113264272	rs17115439	T	C	7620.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;MQ=59.96;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr11	113264470	rs4938013	A	C	6033.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:3,223:0.99:226
chr11	113264511	rs11214596	C	G	2063.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:40,92:0.70:132
chr11	113264521	rs4938014	G	A	542.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:79,32:0.29:111
chr11	113265292	rs10891546	T	C	885.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr11	113266702	rs11214598	T	C	3121.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:65,135:0.68:200
chr11	113268059	rs11604671	G	A	2234.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:50,94:0.65:144
chr11	113270015	rs4938016	G	C	6500.77	.	AC=1;AF=0.500;AN=2;DB;DP=491;set=Intersection	GT:AD:AF:DP	0/1:184,299:0.62:483
chr11	113270160	rs2734849	A	G	6172.77	.	AC=1;AF=0.500;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	0/1:161,281:0.64:442
chr11	113270374	rs2734848	C	T	9376.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chr11	113271065	rs2734847	T	G	676.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr11	113281397	rs6276	C	T	854.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:30,32:0.52:62
chr11	113283459	rs6277	G	A	2847.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:62,127:0.67:189
chr11	113283477	rs6275	A	G	2276.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:56,100:0.64:156
chr11	113283484	rs1801028	G	C	1019.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:98,53:0.35:151
chr11	113285299	rs2511521	G	A	1338.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:22,54:0.71:76
chr11	113294976	rs11608185	T	C	724.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:16,30:0.65:46
chr11	113294998	rs12808482	T	A	1013.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:30,46:0.61:76
chr11	113561054	rs7110736	A	G	14279.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.05;SOR=1.033;set=HC	GT:AD:AF:DP	1/1:0,317:1.00:317
chr11	113561057	rs7110738	A	G	14334.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.52;SOR=1.019;set=HC	GT:AD:AF:DP	1/1:0,322:1.00:322
chr11	113561247	rs11601435	T	C	1063.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.271;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=3.439;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.97;ReadPosRankSum=1.479;SOR=0.374;set=HC	GT:AD:AF:DP	0/1:64,33:0.34:97
chr11	113561256	rs11607591	G	A	956.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.180;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=4.103;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.11;ReadPosRankSum=1.911;SOR=0.304;set=HC	GT:AD:AF:DP	0/1:52,27:0.34:79
chr11	113561727	rs11607690	G	A	4776.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:105,211:0.67:316
chr11	113563688	rs11604602	A	G	473.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:12,22:0.65:34
chr11	113564012	rs11600570	G	A	725.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:15,29:0.66:44
chr11	113566207	rs4936279	C	A	2211.77	.	AC=1;AF=0.500;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	0/1:224,124:0.36:348
chr11	113569575	rs10891587	T	G	309.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:7,12:0.63:19
chr11	113569933	rs12797654	G	C	667.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.57;QD=27.82;SOR=2.124;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr11	113570385	rs11601425	C	T	6664.77	.	AC=1;AF=0.500;AN=2;DB;DP=442;set=Intersection	GT:AD:AF:DP	0/1:144,291:0.67:435
chr11	113570405	rs4936280	T	C	13049.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chr11	113570490	rs3802856	T	C	3159.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr11	113576932	rs7926267	A	G	3586.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:2,135:0.99:137
chr11	113609854	rs4351850	T	A	2787.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr11	113618470	rs2459977	T	A	1471.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr11	113618936	rs2271261	A	T	1866.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:52,75:0.59:127
chr11	113618968	rs2513584	G	C	7146.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr11	113631413	rs56870346	T	TA	256.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.426;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.46;ReadPosRankSum=-0.287;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:26,21:0.45:47
chr11	113670052	rs2459971	T	A	10558.77	.	AC=2;AF=1.00;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	1/1:1,398:1.00:399
chr11	113678924	rs2513582	G	T	2081.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr11	113679119	rs2465647	C	T	4010.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:122,187:0.61:309
chr11	113680018	rs2513581	G	C	2161.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr11	113688357	rs146489349	T	TA	1368.73	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:42,83:0.66:125
chr11	113712278	rs2513577	G	T	1527.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:36,63:0.64:99
chr11	113712526	rs7112957	T	C	356.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:32,17:0.35:49
chr11	113723144	rs17802653	G	A	560.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:44,28:0.39:72
chr11	113724943	rs2513590	T	C	4342.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:117,183:0.61:300
chr11	113802601	rs1176746	A	G	14882.77	.	AC=2;AF=1.00;AN=2;DB;DP=581;set=Intersection	GT:AD:AF:DP	1/1:0,572:1.00:572
chr11	113803028	rs1176744	A	C	4409.77	.	AC=1;AF=0.500;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	0/1:151,196:0.56:347
chr11	113803887	rs2276307	A	G	927.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:12,37:0.76:49
chr11	113813567	rs45519137	C	T	123.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.238;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=1.854;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.17;ReadPosRankSum=-0.133;SOR=0.321;set=HC	GT:AD:AF:DP	0/1:30,9:0.23:39
chr11	113846006	rs1062613	T	C	3119.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:51,134:0.72:185
chr11	113848184	rs4020460	G	GCT	5730.73	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr11	113848474	rs1176722	G	A	2113.77	.	AC=1;AF=0.500;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	0/1:238,118:0.33:356
chr11	113849753	rs1176720	G	C	514.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:35,23:0.40:58
chr11	113850006	rs61905785	A	C	2846.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:86,135:0.61:221
chr11	113851853	rs11607240	C	T	762.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:20,30:0.60:50
chr11	113852187	rs1176719	G	A	1141.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr11	113857886	rs1150220	G	A	2363.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr11	113860425	rs1176713	A	G	9513.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	1/1:0,347:1.00:347
chr11	114057944	rs682155	A	G	568.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:9,21:0.70:30
chr11	114120999	rs670984	C	T	573.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:51,28:0.35:79
chr11	114270604	rs3741302	C	A	1453.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:26,58:0.69:84
chr11	114273673	rs17547494	A	G	1034.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:26,52:0.67:78
chr11	114284645	rs3897612	CA	AG	2280.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;JOINED;set=Intersection	GT:AD:AF:DP	0/1:17,57:0.77:74
chr11	114284744	rs11214983	C	T	3887.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:70,166:0.70:236
chr11	114421646	rs79339030	A	G	1001.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:31,30:0.49:61
chr11	114421674	rs75026329	G	A	1591.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.205;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=1.027;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.12;ReadPosRankSum=0.216;SOR=0.932;set=HC	GT:AD:AF:DP	0/1:50,43:0.46:93
chr11	114421683	rs79413019	G	A	1680.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.496;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.48;ReadPosRankSum=1.416;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:60,42:0.41:102
chr11	114421698	rs75909356	A	G	2160.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.613;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=0.741;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.77;ReadPosRankSum=0.148;SOR=0.595;set=HC	GT:AD:AF:DP	0/1:79,58:0.42:137
chr11	114421705	rs78231204	A	G	2255.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.764;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=0.729;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.14;ReadPosRankSum=0.992;SOR=0.577;set=HC	GT:AD:AF:DP	0/1:90,59:0.40:149
chr11	114421711	rs77069178	C	T	2261.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.511;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=0.705;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.31;ReadPosRankSum=0.935;SOR=0.774;set=HC	GT:AD:AF:DP	0/1:97,61:0.39:158
chr11	114421713	rs112529011	GT	G	2473.73	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:104,61:0.37:165
chr11	114421721	rs78612878	G	A	2555.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:113,75:0.40:188
chr11	114421747	rs78105386	G	A	3883.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.107;ClippingRankSum=0.000;DB;DP=253;ExcessHet=3.0103;FS=3.919;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.41;ReadPosRankSum=-0.786;SOR=0.966;set=HC	GT:AD:AF:DP	0/1:151,101:0.40:252
chr11	114421754	rs73016111	G	A	4225.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.375;ClippingRankSum=0.000;DB;DP=271;ExcessHet=3.0103;FS=5.436;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.65;ReadPosRankSum=-1.123;SOR=1.031;set=HC	GT:AD:AF:DP	0/1:160,110:0.41:270
chr11	114421768	rs75860289	A	T	4912.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.075;ClippingRankSum=0.000;DB;DP=311;ExcessHet=3.0103;FS=5.603;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.85;ReadPosRankSum=-0.116;SOR=1.020;set=HC	GT:AD:AF:DP	0/1:185,125:0.40:310
chr11	114421769	rs76481835	C	G	4990.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.854;ClippingRankSum=0.000;DB;DP=315;ExcessHet=3.0103;FS=3.957;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.89;ReadPosRankSum=-0.554;SOR=0.944;set=HC	GT:AD:AF:DP	0/1:185,129:0.41:314
chr11	114421773	rs74572030	A	G	5090.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.153;ClippingRankSum=0.000;DB;DP=320;ExcessHet=3.0103;FS=4.615;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.96;ReadPosRankSum=-0.510;SOR=0.963;set=HC	GT:AD:AF:DP	0/1:187,132:0.41:319
chr11	114421789	rs113431368	A	AC	6067.73	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:193,154:0.44:347
chr11	114421799	rs79701489	C	T	5993.77	.	AC=1;AF=0.500;AN=2;DB;DP=358;MQ=60.03;set=Intersection	GT:AD:AF:DP	0/1:196,162:0.45:358
chr11	114421817	rs73568242	G	T	6028.77	.	AC=1;AF=0.500;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	0/1:215,190:0.47:405
chr11	114421857	rs78453693	T	C	10404.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.961;ClippingRankSum=0.000;DB;DP=532;ExcessHet=3.0103;FS=3.211;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=0.981;QD=19.71;ReadPosRankSum=0.768;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:258,270:0.51:528
chr11	114421861	rs76118887	G	A	10543.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.380;ClippingRankSum=0.000;DB;DP=538;ExcessHet=3.0103;FS=4.021;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=0.978;QD=19.74;ReadPosRankSum=0.599;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:260,274:0.51:534
chr11	114421895	rs78257939	G	A	7187.77	.	AC=1;AF=0.500;AN=2;DB;DP=611;set=Intersection	GT:AD:AF:DP	0/1:273,334:0.55:607
chr11	114421909	rs79082937	T	C	12705.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.605;ClippingRankSum=0.000;DB;DP=589;ExcessHet=3.0103;FS=3.223;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=0.901;QD=21.72;ReadPosRankSum=-0.143;SOR=0.513;set=HC	GT:AD:AF:DP	0/1:261,324:0.55:585
chr11	114421912	rs78658939	A	G	12713.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.511;ClippingRankSum=0.000;DB;DP=588;ExcessHet=3.0103;FS=3.253;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=0.898;QD=21.81;ReadPosRankSum=-0.204;SOR=0.489;set=HC	GT:AD:AF:DP	0/1:259,324:0.56:583
chr11	114421927	rs78842965	G	A	6626.77	.	AC=1;AF=0.500;AN=2;DB;DP=560;MQ=60.02;set=Intersection	GT:AD:AF:DP	0/1:251,304:0.55:555
chr11	114421962	rs75409523	G	A	9979.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.288;ClippingRankSum=0.000;DB;DP=456;ExcessHet=3.0103;FS=0.541;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.08;ReadPosRankSum=0.004;SOR=0.626;set=HC	GT:AD:AF:DP	0/1:196,256:0.57:452
chr11	114421967	rs79109814	A	G	9855.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.428;ClippingRankSum=0.000;DB;DP=439;ExcessHet=3.0103;FS=1.804;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.60;ReadPosRankSum=-0.439;SOR=0.563;set=HC	GT:AD:AF:DP	0/1:186,250:0.57:436
chr11	114422003	rs73568250	A	C	3699.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:112,156:0.58:268
chr11	114422016	rs76270589	T	A	4354.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.660;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.94;ReadPosRankSum=1.616;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:90,118:0.57:208
chr11	114422025	rs75158214	C	A	4170.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.921;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=1.498;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.97;ReadPosRankSum=0.818;SOR=0.541;set=HC	GT:AD:AF:DP	0/1:72,102:0.59:174
chr11	114422029	rs78778953	T	G	3998.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.940;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=1.548;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.09;ReadPosRankSum=0.713;SOR=0.531;set=HC	GT:AD:AF:DP	0/1:68,98:0.59:166
chr11	114422036	rs77481744	C	T	3560.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.862;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.08;ReadPosRankSum=1.158;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:59,83:0.58:142
chr11	114422052	rs10790022	G	C	1624.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:39,59:0.60:98
chr11	114422068	rs76698432	C	T	1841.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.750;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.61;ReadPosRankSum=0.737;SOR=0.462;set=HC	GT:AD:AF:DP	0/1:30,48:0.62:78
chr11	114422068	.	CTA	TTC	2235	.	AC=1;AF=0.500;AN=2;BRF=0.18;FR=0.5000;HP=1;HapScore=1;MGOF=157;MMLQ=28;MQ=60.0;NF=2;NR=40;PP=2235;QD=54.4873303539;SC=TTTCCCTCTGCTAACTAACAA;SbPval=0.5;Source=Platypus;TC=75;TCF=3;TCR=72;TR=42;WE=114422078;WS=114422058;set=Platypus	GT:AD:AF:DP	0/1:33,42:0.56:75
chr11	114422070	rs75429280	A	C	1847.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.126;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=2.748;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.78;ReadPosRankSum=0.160;SOR=0.265;set=HC	GT:AD:AF:DP	0/1:25,44:0.64:69
chr11	114550334	rs1612325	A	G	727.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr11	114569054	rs1712838	A	G	12447.77	.	AC=2;AF=1.00;AN=2;DB;DP=462;set=Intersection	GT:AD:AF:DP	1/1:0,458:1.00:458
chr11	114574819	rs12364744	C	T	7393.77	.	AC=1;AF=0.500;AN=2;DB;DP=572;set=Intersection	GT:AD:AF:DP	0/1:218,351:0.62:569
chr11	115049180	rs17304149	C	T	361.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr11	115061533	rs4936322	T	C	8240.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:3,311:0.99:314
chr11	115102224	rs11607928	A	G	3860.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr11	116629153	rs17519079	G	A	1224.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:12,47:0.80:59
chr11	116629734	rs67735092	T	TA,TAA	1902.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=2.338;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=5.533;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.22;MQRankSum=0.491;QD=13.40;ReadPosRankSum=-1.694;SOR=1.442;set=HC	GT:AD:AF:DP	1/2:26,80,36:0.56,0.25:142
chr11	116631391	rs3741301	T	C	2453.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr11	116631690	rs3741300	G	A	2776.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr11	116631707	rs3825041	T	C	2400.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr11	116635951	rs79610135	T	C	663.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:55,31:0.36:86
chr11	116640768	rs1269325	G	A	2626.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.43;SOR=1.497;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr11	116641028	rs1263151	C	T	1298.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr11	116652728	.	C	CA	107.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.020;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.69;ReadPosRankSum=-0.885;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:27,13:0.33:40
chr11	116654435	rs603446	C	T	5703.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr11	116661826	rs2072560	T	C	12740.77	.	AC=2;AF=1.00;AN=2;DB;DP=448;set=Intersection	GT:AD:AF:DP	1/1:0,444:1.00:444
chr11	116662579	rs651821	C	T	3454.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr11	116691554	rs371755440	G	A	102.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.650;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=-0.407;QD=1.41;ReadPosRankSum=0.418;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:61,12:0.16:73
chr11	116691634	rs5110	C	A	685.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.213;ClippingRankSum=0.000;DB;DP=267;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=-0.509;QD=2.64;ReadPosRankSum=0.047;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:205,55:0.21:260
chr11	116692334	rs5104	C	T	11962.77	.	AC=2;AF=1.00;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	1/1:0,422:1.00:422
chr11	116692694	rs5100	G	A	3122.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr11	116693464	rs5092	C	T	9275.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:0,332:1.00:332
chr11	116701153	rs2070668	T	G	1283.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr11	116701535	rs4520	T	C	8430.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr11	116703640	rs5128	G	C	2493.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr11	116703671	rs4225	G	T	1509.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr11	116707684	rs2070665	A	G	4581.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr11	116708020	rs5070	A	G	6236.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr11	116720089	rs2289893	T	C	2207.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:1,85:0.99:86
chr11	116732512	rs2075292	G	T	4303.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr11	116732856	rs484646	A	G	1733.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr11	116734545	rs11216164	G	A	5451.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr11	116824884	rs511676	T	G	6351.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr11	116969093	.	G	A	866.77	.	AC=1;AF=0.500;AN=2;DP=62;set=Intersection	GT:AD:AF:DP	0/1:27,34:0.56:61
chr11	117015189	rs113560866	G	C	748.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:26,36:0.58:62
chr11	117015195	rs2735183	C	T	505.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:32,25:0.44:57
chr11	117030581	rs1871757	T	A	809.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:1,29:0.97:30
chr11	117030624	rs35139041	AT	A	1256.73	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:4,69:0.95:73
chr11	117032125	rs3736120	G	T	647.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr11	117034388	rs3057863	CAAAAAA	C,CA	3130.73	.	AC=1,1;AF=0.500,0.500;AN=2;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=3.376;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.11;MQRankSum=0.247;QD=35.99;SOR=2.179;set=HC	GT:AD:AF:DP	1/2:2,70,15:0.80,0.17:87
chr11	117034619	rs7122944	G	T	8907.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr11	117034729	rs10790175	T	C	2324.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr11	117042238	rs10750103	C	T	376.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:46,21:0.31:67
chr11	117042254	.	GA	G	94.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.226;ClippingRankSum=0.000;DP=96;ExcessHet=3.0103;FS=1.124;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.841;QD=1.06;ReadPosRankSum=0.512;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:67,22:0.25:89
chr11	117042377	rs4936367	G	A	5772.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr11	117052069	rs35248926	GTCTCT	G	7928.73	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr11	117053165	rs7946257	A	G	3672.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr11	117059347	rs90192	C	T	3190.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr11	117059552	rs474339	G	A	15110.77	.	AC=2;AF=1.00;AN=2;DB;DP=579;set=Intersection	GT:AD:AF:DP	1/1:0,575:1.00:575
chr11	117064506	rs115787357	T	G	1127.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:31,45:0.59:76
chr11	117064693	rs521171	C	G	6317.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:2,239:0.99:241
chr11	117078338	rs199953984	A	T	179.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.282;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=0.737;MLEAC=1;MLEAF=0.500;MQ=47.91;MQRankSum=-7.405;QD=1.03;ReadPosRankSum=1.090;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:142,33:0.19:175
chr11	117078378	rs2269396	C	T	667.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.283;ClippingRankSum=0.000;DB;DP=334;ExcessHet=3.0103;FS=0.513;MLEAC=1;MLEAF=0.500;MQ=49.27;MQRankSum=-6.481;QD=2.00;ReadPosRankSum=0.685;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:269,65:0.19:334
chr11	117078604	rs192640086	C	T	91.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.326;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.50;MQRankSum=-1.086;QD=2.09;ReadPosRankSum=-1.501;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:36,8:0.18:44
chr11	117090545	rs3882895	T	C	2711.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:32,112:0.78:144
chr11	117090558	rs74830	C	T	2182.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:27,93:0.78:120
chr11	117095361	rs236919	C	T	3509.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:73,160:0.69:233
chr11	117096652	rs2277287	G	A	3044.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:34,136:0.80:170
chr11	117096857	rs11419279	C	CT	457.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.332;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=2.527;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.27;ReadPosRankSum=0.910;SOR=1.277;set=HC	GT:AD:AF:DP	0/1:31,32:0.51:63
chr11	117097952	rs2306473	C	T	2243.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:52,103:0.66:155
chr11	117100029	rs4938362	G	A	1487.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:19,63:0.77:82
chr11	117100594	rs500389	A	G	1379.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:19,61:0.76:80
chr11	117109270	rs678837	G	T	1241.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:35,53:0.60:88
chr11	117110417	rs73010409	T	C	266.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:11,11:0.50:22
chr11	117110764	rs139284124	TA	T	218.76	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:3,13:0.81:16
chr11	117151014	rs3832781	A	AGTTT	3298.73	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:32,81:0.72:113
chr11	117152540	rs505045	G	T	3024.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:51,125:0.71:176
chr11	117160347	rs539765	A	G	7474.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:1,283:1.00:284
chr11	117163765	rs490460	C	A	4186.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:125,193:0.61:318
chr11	117241760	rs2305826	T	A	400.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:65,26:0.29:91
chr11	117251143	rs2305828	A	G	107.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr11	117251521	rs2061293	G	C	334.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.90;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr11	117252489	rs897836	T	C	3075.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr11	117258198	rs501776	T	C	264.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:25,12:0.32:37
chr11	117266312	rs2305830	C	G	872.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:104,52:0.33:156
chr11	117266754	rs693147	A	C	5157.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr11	117267884	rs573455	A	G	7997.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr11	117281566	rs73016324	C	T	4583.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:125,207:0.62:332
chr11	117282800	rs522885	G	T	22870.77	.	AC=2;AF=1.00;AN=2;DB;DP=858;set=Intersection	GT:AD:AF:DP	1/1:2,845:1.00:847
chr11	117299015	rs2925768	T	C	2351.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:47,103:0.69:150
chr11	117299617	rs7935468	T	C	175.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:23,11:0.32:34
chr11	117303858	rs11216382	T	C	141.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.827;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.58;ReadPosRankSum=-0.062;SOR=0.555;set=HC	GT:AD:AF:DP	0/1:74,16:0.18:90
chr11	117306291	rs661789	G	T	1016.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr11	117309581	rs61905269	G	A	3165.77	.	AC=1;AF=0.500;AN=2;DB;DP=489;set=Intersection	GT:AD:AF:DP	0/1:305,177:0.37:482
chr11	117329630	rs117043085	C	T	4450.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.144;ClippingRankSum=0.000;DB;DP=914;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.92;ReadPosRankSum=0.950;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:638,267:0.30:905
chr11	117332352	rs588048	A	G	2457.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr11	117335722	rs538847	T	C	1086.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.311;ClippingRankSum=0.000;DB;DP=292;ExcessHet=3.0103;FS=0.497;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.77;ReadPosRankSum=-0.785;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:216,72:0.25:288
chr11	117335991	rs663191	C	T	384.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.581;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=0.878;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.01;ReadPosRankSum=0.323;SOR=0.828;set=HC	GT:AD:AF:DP	0/1:71,25:0.26:96
chr11	117340499	rs3216151	A	AG	136.73	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:22,7:0.24:29
chr11	117351353	rs577166	C	T	317.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:49,19:0.28:68
chr11	117395497	rs55642294	C	A	1605.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:42,72:0.63:114
chr11	117580254	rs2508559	T	C	1095.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr11	117580356	rs605500	C	T	2397.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr11	117580509	rs655086	A	G	1546.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr11	117580585	rs604245	A	G	411.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr11	117651600	rs75693006	G	A	621.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:16,26:0.62:42
chr11	117691386	rs869789	G	A	1222.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:155,73:0.32:228
chr11	117695340	rs3824943	C	T	13225.77	.	AC=1;AF=0.500;AN=2;DB;DP=870;MQ=59.99;set=Intersection	GT:AD:AF:DP	0/1:260,598:0.70:858
chr11	117698483	rs11216567	A	G	454.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:12,22:0.65:34
chr11	117698762	rs7117314	G	A	645.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:69,33:0.32:102
chr11	117704438	.	A	C	1525.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.080;ClippingRankSum=0.000;DP=275;ExcessHet=3.0103;FS=0.475;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.85;ReadPosRankSum=-1.705;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:171,90:0.34:261
chr11	117709028	rs516655	G	A	2517.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:66,113:0.63:179
chr11	117711232	rs496164	A	G	1195.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:22,50:0.69:72
chr11	117712887	rs473057	G	A	869.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:17,33:0.66:50
chr11	117713653	rs149530999	C	CT	99.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.707;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=0.915;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.69;ReadPosRankSum=-0.042;SOR=0.563;set=HC	GT:AD:AF:DP	0/1:115,29:0.20:144
chr11	117772787	rs3839950	GCACA	G	914.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.015;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=0.891;QD=22.31;ReadPosRankSum=0.906;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:17,24:0.59:41
chr11	117772848	rs491822	C	T	641.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.385;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=7.065;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=-0.784;QD=8.79;ReadPosRankSum=2.310;SOR=1.617;set=HC	GT:AD:AF:DP	0/1:44,29:0.40:73
chr11	117773110	rs494457	G	C	1276.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr11	117774291	rs2845712	A	C	12983.77	.	AC=2;AF=1.00;AN=2;DB;DP=485;set=Intersection	GT:AD:AF:DP	1/1:0,476:1.00:476
chr11	117776526	rs3802872	A	G	719.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:58,31:0.35:89
chr11	117780744	rs12801855	C	T	2050.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:54,93:0.63:147
chr11	117781435	rs2155194	A	G	5250.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr11	117784714	rs11216618	T	C	225.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:2,8:0.80:10
chr11	117785230	.	C	A	2310.77	.	AC=1;AF=0.500;AN=2;DP=495;set=Intersection	GT:AD:AF:DP	0/1:338,152:0.31:490
chr11	117789312	rs201746372	CGGGCTGGAGATGCCT	C	4003.73	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:49,103:0.68:152
chr11	117790658	rs10790220	C	G	3716.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr11	117790674	rs12418028	A	G	492.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:77,31:0.29:108
chr11	117799923	rs7928668	T	C	2452.77	.	AC=1;AF=0.500;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	0/1:272,140:0.34:412
chr11	117800083	rs10892196	T	C	773.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:112,43:0.28:155
chr11	117800169	rs11600129	C	T	220.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:30,12:0.29:42
chr11	117863829	rs2508450	T	C	702.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:62,33:0.35:95
chr11	117864047	rs2256111	A	G	1617.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.080;ClippingRankSum=0.000;DB;DP=319;ExcessHet=3.0103;FS=2.844;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.19;ReadPosRankSum=1.832;SOR=0.905;set=HC	GT:AD:AF:DP	0/1:222,90:0.29:312
chr11	117864063	rs3135932	A	G	4497.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:77,190:0.71:267
chr11	117869670	rs2229113	A	G	2187.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:183,112:0.38:295
chr11	117869878	rs2229114	C	T	1862.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:215,103:0.32:318
chr11	117965530	rs2276122	A	G	2836.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:81,127:0.61:208
chr11	117965595	rs2276123	C	T	1398.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:109,71:0.39:180
chr11	117965646	rs2276125	G	A	961.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:53,48:0.48:101
chr11	117973673	rs2276129	G	A	722.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:106,42:0.28:148
chr11	117979744	rs10892216	C	A	653.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:63,35:0.36:98
chr11	117982495	rs1941635	T	G	11692.77	.	AC=2;AF=1.00;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	1/1:0,431:1.00:431
chr11	117986152	rs7925897	A	C	295.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:8,14:0.64:22
chr11	117988082	rs642215	T	C	7541.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr11	117988223	rs643014	G	A	5923.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr11	117988539	rs671111	G	A	294.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:52,19:0.27:71
chr11	117996119	rs7944738	C	T	708.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:21,29:0.58:50
chr11	118011776	rs668468	G	A	66.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:8,4:0.33:12
chr11	118011805	rs644287	C	T	58.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.045;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.46;ReadPosRankSum=1.048;SOR=1.302;set=HC	GT:AD:AF:DP	0/1:12,5:0.29:17
chr11	118016068	rs1793137	C	T	116.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.811;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.59;ReadPosRankSum=-0.313;SOR=0.476;set=HC	GT:AD:AF:DP	0/1:35,10:0.22:45
chr11	118037813	rs8192613	G	T	5787.77	.	AC=1;AF=0.500;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	0/1:123,239:0.66:362
chr11	118067426	rs648947	A	G	2765.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr11	118067621	rs951657	A	G	8350.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:2,308:0.99:310
chr11	118068949	rs1617182	C	T	2936.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr11	118071097	rs1626649	T	C	774.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr11	118074117	rs1793173	A	G	1463.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr11	118074337	rs1793174	A	G	6189.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr11	118081345	rs17121881	A	T	6103.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr11	118081468	rs17121882	C	T	3432.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr11	118083664	rs1715429	A	G	10257.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	1/1:0,377:1.00:377
chr11	118107805	rs1793140	A	G	3513.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr11	118108003	rs1793141	G	A	4522.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr11	118110977	rs2853006	T	C	11004.77	.	AC=2;AF=1.00;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	1/1:1,406:1.00:407
chr11	118134597	rs4936426	C	T	982.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr11	118134785	rs1624780	T	G	8603.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;MQ=60.03;set=Intersection	GT:AD:AF:DP	1/1:0,326:1.00:326
chr11	118134794	rs201577748	A	AGCCC	1843.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.951;ClippingRankSum=0.000;DB;DP=328;ExcessHet=3.0103;FS=4.026;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=1.418;QD=6.11;ReadPosRankSum=1.597;SOR=0.546;set=HC	GT:AD:AF:DP	0/1:201,101:0.33:302
chr11	118175540	rs2231441	A	G	660.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:9,27:0.75:36
chr11	118178007	rs1126924	C	T	4602.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:111,212:0.66:323
chr11	118179197	rs1599810	A	G	1832.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.32;SOR=1.739;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr11	118179197	.	ATGG	GTGA,GTGG	479	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.34;FR=0.5000,0.5000;HP=2;HapScore=2;MGOF=3;MMLQ=28;MQ=60.0;NF=5,14;NR=11,33;PP=224,479;QD=17.3417421789;SC=GTTTTCAAATATGGAATGAAA;SbPval=0.52;Source=Platypus;TC=48;TCF=14;TCR=34;TR=16,47;WE=118179208;WS=118179187;set=Platypus	GT:AF:DP	0/1:0.33:48
chr11	118179200	rs1599809	G	A	382.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.356;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.22;ReadPosRankSum=0.251;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:34,19:0.36:53
chr11	118182801	rs1945764	G	A	1237.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr11	118182829	rs1945765	T	A	391.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:53,23:0.30:76
chr11	118183733	rs28423005	C	T	803.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:18,33:0.65:51
chr11	118185140	rs2298821	T	C	2578.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:58,120:0.67:178
chr11	118209960	rs2276424	A	C	774.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:56,38:0.40:94
chr11	118210106	rs2276423	G	C	856.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:88,45:0.34:133
chr11	118210424	rs67065773	TAC	T	827.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.762;ClippingRankSum=0.000;DB;DP=367;ExcessHet=3.0103;FS=1.249;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.732;QD=2.58;ReadPosRankSum=0.390;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:256,65:0.20:321
chr11	118215075	rs150376137	AGGCT	A	2258.73	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr11	118221137	rs3753060	C	T	695.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:26,29:0.53:55
chr11	118221349	rs3753059	TG	CT	5412.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;JOINED;set=Intersection	GT:AD:AF:DP	0/1:95,138:0.59:233
chr11	118221474	rs1561966	G	A	1353.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr11	118239266	rs2276421	G	A	1716.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:45,74:0.62:119
chr11	118240332	rs11216860	T	C	1863.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr11	118243700	rs34104337	TA	T	152.84	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.877;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=8.451;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=10.92;ReadPosRankSum=1.738;SOR=3.750;set=HC	GT:AD:AF:DP	1/1:1,13:0.93:14
chr11	118245971	rs143426471	C	CTG	1416.73	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:57,50:0.47:107
chr11	118250586	rs7949539	A	G	316.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:4,13:0.76:17
chr11	118255278	rs6589663	G	A	2002.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:25,84:0.77:109
chr11	118255662	rs370025001	TAA	T	579.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.748;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=4.076;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.216;QD=6.37;ReadPosRankSum=0.384;SOR=0.463;set=HC	GT:AD:AF:DP	0/1:53,38:0.42:91
chr11	118257048	rs3216092	G	GT	327.50	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:2,15:0.88:17
chr11	118267262	rs5795126	C	CT	152.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.484;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=3.310;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.55;ReadPosRankSum=0.984;SOR=1.931;set=HC	GT:AD:AF:DP	0/1:27,16:0.37:43
chr11	118301616	rs11288713	AT	A	307.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.120;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=1.001;QD=6.41;ReadPosRankSum=0.833;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:23,25:0.52:48
chr11	118309873	rs35067847	C	CA	572.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.768;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.31;ReadPosRankSum=1.877;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:81,52:0.39:133
chr11	118352460	.	C	A	6081.77	.	AC=1;AF=0.500;AN=2;DP=434;set=Intersection	GT:AD:AF:DP	0/1:149,274:0.65:423
chr11	118353037	rs59281381	G	GT	351.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.828;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=6.155;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.03;ReadPosRankSum=-1.874;SOR=1.458;set=HC	GT:AD:AF:DP	0/1:75,41:0.35:116
chr11	118359161	rs572126	G	A	392.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr11	118362414	rs562780	T	C	1962.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr11	118369265	.	TA	T	296.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.478;ClippingRankSum=0.000;DP=178;ExcessHet=3.0103;FS=0.727;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.03;ReadPosRankSum=0.338;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:100,46:0.32:146
chr11	118391375	rs576950	A	G	542.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:5,22:0.81:27
chr11	118401833	.	C	G	139.77	.	AC=1;AF=0.500;AN=2;DP=18;set=Intersection	GT:AD:AF:DP	0/1:11,7:0.39:18
chr11	118404804	rs6589664	G	A	2950.77	.	AC=1;AF=0.500;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	0/1:269,160:0.37:429
chr11	118405068	rs12289253	A	G	3493.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:96,156:0.62:252
chr11	118405305	rs45505501	G	A	7127.77	.	AC=1;AF=0.500;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	0/1:135,323:0.71:458
chr11	118405343	rs512849	G	A	11305.77	.	AC=2;AF=1.00;AN=2;DB;DP=436;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.23;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,431:1.00:431
chr11	118405377	rs45485302	C	A	4308.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:149,197:0.57:346
chr11	118405437	rs45548238	CA	TG	3095.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;JOINED;set=Intersection	GT:AD:AF:DP	0/1:78,80:0.51:158
chr11	118405453	rs45474901	T	C	1161.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:64,57:0.47:121
chr11	118406328	rs141837942	CAGTGTGGA	C	6532.73	.	AC=1;AF=0.500;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:138,168:0.55:306
chr11	118415847	rs3741320	GA	CC	828.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;JOINED;set=Intersection	GT:AD:AF:DP	0/1:12,21:0.64:33
chr11	118415931	rs368284513	CT	C	175.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:13,14:0.52:27
chr11	118416073	rs3825055	A	C	3138.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:72,146:0.67:218
chr11	118416253	rs2277295	C	T	981.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:26,44:0.63:70
chr11	118422385	.	C	CAA	187.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.094;ClippingRankSum=0.000;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.51;ReadPosRankSum=-1.026;SOR=1.460;set=HC	GT:AD:AF:DP	0/1:11,14:0.56:25
chr11	118422868	rs2277293	C	T	1924.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:35,81:0.70:116
chr11	118425051	rs56403966	G	A	581.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;MQ=59.25;set=Intersection	GT:AD:AF:DP	0/1:12,26:0.68:38
chr11	118425063	rs55857590	A	G	671.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;MQ=59.67;set=Intersection	GT:AD:AF:DP	0/1:13,32:0.71:45
chr11	118425419	rs2277292	G	T	505.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:8,20:0.71:28
chr11	118430519	rs11552421	C	T	3559.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:108,166:0.61:274
chr11	118444525	rs11216907	G	A	4650.77	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:123,212:0.63:335
chr11	118451901	rs11216911	T	C	2382.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:43,101:0.70:144
chr11	118454177	rs17842763	A	G	442.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:12,18:0.60:30
chr11	118471423	rs11216925	T	C	2359.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:54,105:0.66:159
chr11	118471996	rs11216926	C	T	99.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.494;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=2.463;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.31;ReadPosRankSum=1.207;SOR=1.144;set=HC	GT:AD:AF:DP	0/1:6,6:0.50:12
chr11	118472354	rs10892245	C	A	4490.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:96,193:0.67:289
chr11	118500744	rs10578316	GT	G	696.80	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.867;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=2.944;MLEAC=2;MLEAF=1.000;MQ=60.13;MQRankSum=0.487;QD=9.81;ReadPosRankSum=-1.305;SOR=0.568;set=HC	GT:AD:AF:DP	1/1:10,61:0.86:71
chr11	118505676	rs58507527	GT	G	3074.73	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr11	118518964	rs11314049	GC	G	650.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	118529017	rs6589669	T	G	1232.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr11	118529044	rs11448549	C	CG	1995.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr11	118529069	rs6589670	G	C	2011.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.79;SOR=0.739;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr11	118529078	rs6589671	G	C	1820.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.52;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr11	118622744	rs6589689	G	A	2489.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr11	118625609	rs580079	C	T	1697.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr11	118626286	rs11217014	T	C	1468.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr11	118627149	rs11217016	A	C	761.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr11	118629364	rs73001486	G	A	3289.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr11	118757056	.	GAA	G,GA	1856.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=2.350;ClippingRankSum=0.000;DP=155;ExcessHet=3.0103;FS=3.568;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=13.96;ReadPosRankSum=-0.658;SOR=0.359;set=HC	GT:AD:AF:DP	1/2:20,85,28:0.64,0.21:133
chr11	118757191	rs1790192	G	A	5044.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.04;SOR=1.123;set=HC	GT:AD:AF:DP	1/1:0,120:1.00:120
chr11	118757201	rs3176908	C	G	4846.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.06;SOR=1.220;set=HC	GT:AD:AF:DP	1/1:0,110:1.00:110
chr11	118769032	rs11217081	G	A	614.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr11	118781601	rs11376918	C	CA	18724.73	.	AC=2;AF=1.00;AN=2;DB;DP=616;set=Intersection	GT:AD:AF:DP	1/1:0,589:1.00:589
chr11	118781638	rs11376919	C	CG	16994.73	.	AC=2;AF=1.00;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	1/1:0,395:1.00:395
chr11	118781655	rs11376920	C	CG	15404.73	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:0,343:1.00:343
chr11	118828184	rs45586434	C	A	1747.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:41,72:0.64:113
chr11	118842745	rs36158515	A	AG	6477.73	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr11	118842780	.	A	AG	3806.73	.	AC=2;AF=1.00;AN=2;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr11	118851138	rs4456264	C	T	2643.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:75,109:0.59:184
chr11	118852081	rs4938606	A	G	1552.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:45,65:0.59:110
chr11	118867695	rs4938617	C	T	832.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:34,41:0.55:75
chr11	118867803	rs4938618	G	C	449.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:7,20:0.74:27
chr11	118868842	rs58467585	A	AG	598.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr11	118869447	rs12786333	T	C	266.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:24,13:0.35:37
chr11	118869460	rs3737504	A	G	453.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:10,19:0.66:29
chr11	118872404	rs6589713	T	C	1137.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:38,51:0.57:89
chr11	118884009	rs371143734	AT	A	142.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.280;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=1.670;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.20;ReadPosRankSum=0.517;SOR=1.140;set=HC	GT:AD:AF:DP	0/1:21,13:0.38:34
chr11	118886117	rs10111	C	T	5077.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:98,227:0.70:325
chr11	118886656	rs7131534	G	A	2690.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:56,119:0.68:175
chr11	118888619	rs11602764	A	G	1819.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:42,82:0.66:124
chr11	118888831	rs11820805	T	C	2516.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:46,100:0.68:146
chr11	118889114	rs10892321	A	G	8540.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr11	118889132	rs11217124	A	G	4155.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:67,172:0.72:239
chr11	118889185	rs11217125	T	C	1819.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:20,78:0.80:98
chr11	118889396	rs72350455	G	GAGGAGA	2169.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.015;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.23;ReadPosRankSum=0.574;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:29,57:0.66:86
chr11	118890085	rs4938619	C	T	427.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:19,18:0.49:37
chr11	118894287	rs569	A	G	809.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:9,31:0.78:40
chr11	118895686	rs8192696	C	T	4354.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:107,196:0.65:303
chr11	118896115	rs2276072	AA	GC	1315.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;JOINED;set=Intersection	GT:AD:AF:DP	0/1:22,34:0.61:56
chr11	118898319	rs741811	G	A	2903.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:71,125:0.64:196
chr11	118898435	rs56966114	AC	A	11979.73	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chr11	118899218	rs4936459	C	T	1831.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:53,79:0.60:132
chr11	118915757	rs11363127	TG	T	5381.73	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr11	118915944	rs1043314	A	G	3072.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr11	118917587	rs45510602	C	T	219.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:23,12:0.34:35
chr11	118919132	rs2276060	G	A	4218.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr11	118919206	rs568922	T	C	6578.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr11	118920112	rs670192	A	G	2965.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:1,112:0.99:113
chr11	118920453	rs673768	T	C	12929.77	.	AC=2;AF=1.00;AN=2;DB;DP=483;set=Intersection	GT:AD:AF:DP	1/1:0,481:1.00:481
chr11	118925341	rs538478	G	A	3735.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr11	118926720	rs470679	A	C	3103.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr11	118927013	rs57740718	T	TC	7193.73	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr11	118938880	rs584115	A	G	2501.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.89;SOR=3.729;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr11	118938880	.	ATC	GTT	2646	.	AC=2;AF=1.00;AN=2;BRF=0.37;FR=1.0000;HP=2;HapScore=1;MGOF=1;MMLQ=24;MQ=60.0;NF=5;NR=43;PP=2646;QD=20;SC=AAGGAAGTCCATCTCCTAACT;SbPval=0.52;Source=Platypus;TC=50;TCF=5;TCR=45;TR=48;WE=118938890;WS=118938870;set=Platypus	GT:AD:AF:DP	1/1:2,48:0.96:50
chr11	118938882	rs670526	C	T	2501.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.49;SOR=3.651;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr11	118939939	rs5795166	T	TC	3327.73	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr11	118947634	rs540261	C	T	10243.77	.	AC=2;AF=1.00;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	1/1:0,383:1.00:383
chr11	118955679	rs589925	C	T	21469.77	.	AC=2;AF=1.00;AN=2;DB;DP=801;set=Intersection	GT:AD:AF:DP	1/1:2,786:1.00:788
chr11	118955882	.	CTTTTTTTTTTTTT	C	3097.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.808;ClippingRankSum=0.000;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=0.422;QD=36.44;ReadPosRankSum=2.910;SOR=0.841;set=HC	GT:AD:AF:DP	1/1:5,80:0.94:85
chr11	118962230	rs1131488	G	T	4783.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:106,213:0.67:319
chr11	118962816	rs1784304	C	A	1367.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:30,64:0.68:94
chr11	118967758	rs643788	T	C	2616.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:43,117:0.73:160
chr11	118968959	rs10544271	TAG	T	853.73	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:14,24:0.63:38
chr11	118970875	rs10892330	T	C	1242.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.09;SOR=3.981;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr11	118970875	.	TGCA	CGCA,CGCC	320	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.18;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=1;MMLQ=24;MQ=60.0;NF=26,15;NR=3,1;PP=191,320;QD=7.78521422577;SC=ATAATTACTATGCATATTGCT;SbPval=0.55;Source=Platypus;TC=30;TCF=27;TCR=3;TR=29,16;WE=118970886;WS=118970865;set=Platypus	GT:AF:DP	0/1:0.97:30
chr11	118970878	rs603826	A	C	495.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.694;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=2.553;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.58;ReadPosRankSum=-0.561;SOR=1.845;set=HC	GT:AD:AF:DP	0/1:14,20:0.59:34
chr11	118971251	rs649870	A	G	1398.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:26,57:0.69:83
chr11	118973112	rs3825060	AA	GC	14072.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr11	118973133	rs10790282	G	A	1357.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:172,79:0.31:251
chr11	118978411	rs7940073	G	C	469.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr11	118981025	rs617948	A	G	560.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:70,31:0.31:101
chr11	118983681	rs682795	C	T	298.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:22,13:0.37:35
chr11	118984287	rs4938630	A	C	2124.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr11	118985151	rs595782	T	C	1650.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:27,71:0.72:98
chr11	118986630	rs608444	G	A	267.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:34,14:0.29:48
chr11	118986659	rs608793	C	T	540.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:57,26:0.31:83
chr11	118997869	rs547345	C	T	428.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.676;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=1.839;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.29;ReadPosRankSum=-0.011;SOR=0.909;set=HC	GT:AD:AF:DP	0/1:73,27:0.27:100
chr11	119002439	rs2298480	A	G	1080.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:16,38:0.70:54
chr11	119002768	rs73562872	G	T	1712.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:30,77:0.72:107
chr11	119004686	rs658922	T	A	982.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:33,40:0.55:73
chr11	119005088	rs512703	C	T	15235.77	.	AC=2;AF=1.00;AN=2;DB;DP=573;set=Intersection	GT:AD:AF:DP	1/1:0,568:1.00:568
chr11	119024931	rs4148167	A	G	3370.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:74,141:0.66:215
chr11	119027545	rs4148170	G	A	4170.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:109,189:0.63:298
chr11	119028813	rs626776	C	G	1048.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:11,35:0.76:46
chr11	119029058	rs192734017	G	A	4990.77	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:114,223:0.66:337
chr11	119031841	rs11383101	G	GC	3085.73	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr11	119043500	rs644252	T	G	2139.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:49,87:0.64:136
chr11	119043656	rs643423	C	T	3686.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:112,176:0.61:288
chr11	119050352	rs140191229	T	TGAACAGGCACATGGAAGGCC	2656.73	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:29,51:0.64:80
chr11	119052826	rs4245191	C	A	4086.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:78,181:0.70:259
chr11	119054208	rs45439091	G	T	1374.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:27,51:0.65:78
chr11	119056273	rs73564493	G	A	863.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:28,38:0.58:66
chr11	119056681	rs45612531	G	C	1376.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:115,72:0.39:187
chr11	119059404	rs1815811	G	A	4554.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:110,203:0.65:313
chr11	119060963	rs45535039	T	C	2808.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr11	119065484	rs60630529	A	AC	7475.73	.	AC=2;AF=1.00;AN=2;DB;DP=239;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.27;QD=33.52;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,223:1.00:223
chr11	119065709	rs10750139	G	C	10877.77	.	AC=2;AF=1.00;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	1/1:0,409:1.00:409
chr11	119145463	.	G	GT	67.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.351;ClippingRankSum=0.000;DP=172;ExcessHet=3.0103;FS=5.501;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.42;ReadPosRankSum=0.040;SOR=0.332;set=HC	GT:AD:AF:DP	0/1:133,29:0.18:162
chr11	119145705	rs3842642	G	GT	7649.73	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:1,245:1.00:246
chr11	119146659	rs2511854	G	C	2441.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr11	119148573	rs2510152	G	T	9876.77	.	AC=2;AF=1.00;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	1/1:0,361:1.00:361
chr11	119155618	rs2298650	G	T	1336.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr11	119181170	rs2249466	T	C	6411.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr11	119181674	rs2510146	G	C	11957.77	.	AC=1;AF=0.500;AN=2;DB;DP=805;set=Intersection	GT:AD:AF:DP	0/1:260,528:0.67:788
chr11	119206375	rs2511841	G	A	7196.77	.	AC=1;AF=0.500;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	0/1:142,295:0.68:437
chr11	119213303	rs11217241	C	T	4493.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:65,191:0.75:256
chr11	119214771	rs948413	A	G	1404.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:36,54:0.60:90
chr11	119215165	rs10790289	C	T	3056.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:62,134:0.68:196
chr11	119215253	rs2509388	G	C	2402.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.387;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=4.900;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.30;ReadPosRankSum=-0.931;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:22,60:0.73:82
chr11	119215256	rs10892350	C	T	2402.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.603;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=5.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=30.03;ReadPosRankSum=-0.732;SOR=0.407;set=HC	GT:AD:AF:DP	0/1:22,58:0.72:80
chr11	119216231	rs2510143	A	G	7248.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr11	119216279	rs36015759	G	A	4415.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:112,197:0.64:309
chr11	119217254	rs883247	C	T	255.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:47,17:0.27:64
chr11	119217311	rs883245	G	A	85.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:18,6:0.25:24
chr11	119227844	rs11217253	G	C	4311.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr11	119228547	rs45619639	TGA	T	1390.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.926;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.000;QD=9.15;ReadPosRankSum=-1.383;SOR=0.630;set=HC	GT:AD:AF:DP	0/1:108,44:0.29:152
chr11	119229374	rs7937208	T	C	4654.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr11	119229964	rs2241646	G	A	6842.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr11	119244095	rs587985	C	T	5749.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr11	119252151	rs565296	C	T	16743.77	.	AC=2;AF=1.00;AN=2;DB;DP=611;set=Intersection	GT:AD:AF:DP	1/1:0,609:1.00:609
chr11	119252199	rs670906	T	G	16002.77	.	AC=2;AF=1.00;AN=2;DB;DP=593;set=Intersection	GT:AD:AF:DP	1/1:1,590:1.00:591
chr11	119290034	rs1054735	G	C	6937.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr11	119291480	rs3138091	G	A	6583.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr11	119291688	rs3751026	A	G	2865.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr11	119509625	rs1022080	C	T	1911.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr11	119510644	rs7940667	A	C	10695.77	.	AC=2;AF=1.00;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	1/1:0,403:1.00:403
chr11	119548052	rs10892429	G	A	675.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.228;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=3.574;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.66;ReadPosRankSum=0.095;SOR=1.207;set=HC	GT:AD:AF:DP	0/1:44,34:0.44:78
chr11	119584506	rs4245205	T	C	800.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr11	119879327	rs17245368	C	T	528.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:15,24:0.62:39
chr11	119984202	rs506127	A	G	619.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr11	119986182	rs3216120	C	A	8119.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr11	119987576	rs488222	C	T	1603.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr11	119992839	.	AGTGT	A,AGT	2956.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-2.501;ClippingRankSum=0.000;DP=170;ExcessHet=3.0103;FS=2.405;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.06;MQRankSum=0.251;QD=28.71;ReadPosRankSum=1.325;SOR=0.202;set=HC	GT:AD:AF:DP	1/2:4,18,81:0.17,0.79:103
chr11	119992871	rs2508493	T	A	3319.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:3,106:0.97:109
chr11	119993897	rs66674912	CCT	C	28169.73	.	AC=2;AF=1.00;AN=2;DB;DP=660;set=Intersection	GT:AD:AF:DP	1/1:0,637:1.00:637
chr11	119999191	rs569044	A	G	2684.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr11	120041110	rs7949789	T	A	25179.77	.	AC=2;AF=1.00;AN=2;DB;DP=944;set=Intersection	GT:AD:AF:DP	1/1:4,927:1.00:931
chr11	120041444	rs4936509	C	T	3140.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr11	120097498	rs873059	T	C	2304.77	.	AC=1;AF=0.500;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	0/1:278,127:0.31:405
chr11	120099658	rs2508489	A	G	9570.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr11	120099679	rs2508490	G	A	10202.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr11	120099791	rs2465654	C	T	2707.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:91,128:0.58:219
chr11	120107411	rs882856	G	A	614.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:94,37:0.28:131
chr11	120111041	rs10790371	G	C	2756.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:68,124:0.65:192
chr11	120139700	rs6589803	C	T	605.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:15,24:0.62:39
chr11	120175749	rs7110845	A	G	1848.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:52,86:0.62:138
chr11	120186190	rs17245511	G	A	715.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:11,28:0.72:39
chr11	120187971	rs2282537	G	A	3194.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:45,142:0.76:187
chr11	120188964	rs61898345	A	C	984.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:21,39:0.65:60
chr11	120198093	rs1893261	G	A	1704.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr11	120276903	rs61900795	T	C	889.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:95,49:0.34:144
chr11	120278359	rs6589812	T	C	1081.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr11	120278688	rs7937612	T	C	875.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr11	120292477	rs76693355	T	C	2518.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:47,118:0.72:165
chr11	120292570	rs532006	T	A	2383.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr11	120300327	rs11217865	A	C	824.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:107,43:0.29:150
chr11	120310959	rs7108596	G	A	2030.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:183,101:0.36:284
chr11	120310978	rs9666435	A	C	1646.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:112,72:0.39:184
chr11	120311004	rs145278231	G	A	914.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:78,42:0.35:120
chr11	120312746	rs723937	G	A	2255.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr11	120313055	rs199708925	CT	C	64.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.337;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=0.950;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.49;ReadPosRankSum=-0.309;SOR=0.503;set=HC	GT:AD:AF:DP	0/1:106,25:0.19:131
chr11	120319064	rs2305008	A	C	6164.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr11	120328858	rs766894	T	C	2645.77	.	AC=1;AF=0.500;AN=2;DB;DP=497;set=Intersection	GT:AD:AF:DP	0/1:338,155:0.31:493
chr11	120330149	rs2305010	G	C	973.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr11	120340060	rs2305013	A	T	4610.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:99,213:0.68:312
chr11	120347886	rs111312404	T	TTGTTG	3499.73	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr11	120348128	.	G	GT	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.070;ClippingRankSum=0.000;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=2.245;QD=1.18;ReadPosRankSum=-0.257;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:31,13:0.30:44
chr11	120349142	rs7120040	A	G	652.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:68,32:0.32:100
chr11	120355791	rs9625	G	T	263.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:31,16:0.34:47
chr11	120382409	rs7952113	T	C	84.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.327;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=4.481;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.24;ReadPosRankSum=-1.123;SOR=0.595;set=HC	GT:AD:AF:DP	0/1:13,7:0.35:20
chr11	120385841	rs2243746	T	C	609.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:70,36:0.34:106
chr11	120530973	rs6589829	C	T	5643.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:1,210:1.00:211
chr11	120690372	rs56326825	T	C	1606.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:50,75:0.60:125
chr11	120707644	rs3934628	C	T	2220.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:57,100:0.64:157
chr11	120823528	rs10750178	A	G	8678.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr11	120823608	rs2298725	G	A	2530.77	.	AC=1;AF=0.500;AN=2;DB;DP=533;set=Intersection	GT:AD:AF:DP	0/1:381,151:0.28:532
chr11	120823721	rs2298724	A	G	660.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.531;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=0.672;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.00;ReadPosRankSum=0.774;SOR=0.618;set=HC	GT:AD:AF:DP	0/1:125,40:0.24:165
chr11	120827609	rs644057	A	G	7221.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:2,266:0.99:268
chr11	120831878	rs607142	C	T	1300.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:28,54:0.66:82
chr11	120837821	rs2276319	G	A	1206.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:109,66:0.38:175
chr11	120852961	rs499804	C	A	5448.77	.	AC=1;AF=0.500;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	0/1:145,240:0.62:385
chr11	120857051	rs11218092	G	A	1094.28	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:7,48:0.87:55
chr11	120989335	rs612969	A	G	9675.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:0,356:1.00:356
chr11	120996292	rs536069	A	G	12528.77	.	AC=2;AF=1.00;AN=2;DB;DP=483;set=Intersection	GT:AD:AF:DP	1/1:0,465:1.00:465
chr11	121000212	rs643744	T	G	3137.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr11	121000784	rs586473	T	C	13645.77	.	AC=2;AF=1.00;AN=2;DB;DP=495;set=Intersection	GT:AD:AF:DP	1/1:0,490:1.00:490
chr11	121016145	rs4936584	G	A	1587.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr11	121016818	rs12275038	G	A	3233.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:1,108:0.99:109
chr11	121016838	rs7130952	C	T	2282.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:1,74:0.99:75
chr11	121032978	rs526433	G	A	8149.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr11	121033105	rs662496	A	G	2768.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:2,93:0.98:95
chr11	121035860	rs546916	G	T	4968.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr11	121037530	rs489985	G	A	569.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:24,24:0.50:48
chr11	121037554	rs615697	T	C	380.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:15,15:0.50:30
chr11	121038810	rs2155369	C	T	2553.77	.	AC=1;AF=0.500;AN=2;DB;DP=552;set=Intersection	GT:AD:AF:DP	0/1:379,161:0.30:540
chr11	121178302	rs1061332	A	C	445.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr11	121348741	rs10549687	CA	C	155.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.673;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=1.561;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=0.798;QD=5.37;ReadPosRankSum=0.399;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:10,19:0.66:29
chr11	121360884	rs560573	T	A	6050.77	.	AC=1;AF=0.500;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	0/1:161,274:0.63:435
chr11	121361015	rs2298525	G	A	492.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:59,25:0.30:84
chr11	121393212	rs630813	C	G	3472.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr11	121403229	rs636588	T	C	11509.77	.	AC=2;AF=1.00;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	1/1:0,421:1.00:421
chr11	121403345	rs631232	T	C	4171.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr11	121437819	rs1699107	C	G	6106.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr11	121445084	rs1792126	T	C	3128.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr11	121447807	rs1790212	A	G	2365.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr11	121448090	rs2070045	T	G	6739.77	.	AC=1;AF=0.500;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	0/1:148,309:0.68:457
chr11	121448183	rs3824966	C	G	3305.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:81,140:0.63:221
chr11	121456962	rs1699102	C	T	578.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:105,36:0.26:141
chr11	121460664	rs1625828	G	A	765.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:72,38:0.35:110
chr11	121475798	rs1784929	T	A	2995.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr11	121475922	rs3824968	T	A	2575.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:65,116:0.64:181
chr11	121478958	rs2282649	C	T	940.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:31,39:0.56:70
chr11	121483401	rs1010159	C	T	721.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.631;ClippingRankSum=0.000;DB;DP=259;ExcessHet=3.0103;FS=1.885;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.86;ReadPosRankSum=-0.705;SOR=0.862;set=HC	GT:AD:AF:DP	0/1:197,55:0.22:252
chr11	121483651	rs1010158	G	A	186.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:12,9:0.43:21
chr11	121489416	rs1784933	G	A	2032.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr11	121491782	rs1792120	G	A	6837.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr11	121493001	rs1614735	T	G	393.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.740;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.13;ReadPosRankSum=0.530;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:97,29:0.23:126
chr11	121493072	rs11454566	T	TA	1231.73	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:4,61:0.94:65
chr11	122165766	rs532540	G	A	2785.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr11	122172113	rs558962	T	C	1067.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr11	122172318	rs615683	C	T	2200.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.15;SOR=1.848;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr11	122172321	rs693194	T	C	2151.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.78;SOR=1.814;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr11	122650172	rs4935813	C	G	1487.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:24,57:0.70:81
chr11	122709178	rs3134425	T	C	866.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:151,53:0.26:204
chr11	122738062	rs57365669	CAA	C	679.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=21.24;SOR=2.200;set=HC	GT:AD:AF:DP	1/1:6,26:0.81:32
chr11	122738261	rs2272094	A	G	1486.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:48,65:0.58:113
chr11	122742028	rs1916036	C	G	477.73	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:52,28:0.35:80
chr11	122775227	rs3107630	T	C	317.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr11	122776007	rs74695569	T	C	873.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.093;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=2.091;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.65;ReadPosRankSum=0.368;SOR=0.874;set=HC	GT:AD:AF:DP	0/1:139,49:0.26:188
chr11	122795688	rs11218891	T	C	2358.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:53,100:0.65:153
chr11	122795782	rs11218892	G	A	536.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:14,23:0.62:37
chr11	122805053	.	TAA	T	92.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.618;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.65;ReadPosRankSum=-0.978;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:28,7:0.20:35
chr11	122805057	.	TAAATAA	T	78.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.323;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.92;ReadPosRankSum=-1.014;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:34,7:0.17:41
chr11	122805910	rs4502006	C	A	1048.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:23,41:0.64:64
chr11	122805948	rs113946401	C	CT	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.219;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=2.205;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.35;ReadPosRankSum=2.511;SOR=0.255;set=HC	GT:AD:AF:DP	0/1:14,8:0.36:22
chr11	122827905	rs143794192	ATTAAC	A	150.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.464;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=2.172;QD=3.97;ReadPosRankSum=-0.421;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:31,7:0.18:38
chr11	122830214	rs7107502	G	A	5490.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:2,203:0.99:205
chr11	122830251	rs1057703	T	G	938.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:60,38:0.39:98
chr11	122830274	rs1057704	T	C	1806.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr11	122849816	rs7939002	G	A	1654.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:27,75:0.74:102
chr11	122852349	rs62624971	G	C	324.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.838;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=3.057;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.18;ReadPosRankSum=0.911;SOR=1.051;set=HC	GT:AD:AF:DP	0/1:78,24:0.24:102
chr11	122928622	rs4802	A	G	770.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:112,48:0.30:160
chr11	122928875	rs4936770	C	T	128.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.751;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=1.145;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.46;ReadPosRankSum=3.034;SOR=0.978;set=HC	GT:AD:AF:DP	0/1:71,17:0.19:88
chr11	122928934	rs71057327	G	GAA	407.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.472;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=0.000;QD=3.31;ReadPosRankSum=0.009;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:74,49:0.40:123
chr11	122929407	rs1064585	T	G	951.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:76,43:0.36:119
chr11	122929624	rs1461496	A	G	1542.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:142,81:0.36:223
chr11	122930108	rs76152311	T	TTG	2515.73	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:153,74:0.33:227
chr11	122931075	rs149047184	A	AC	688.73	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:69,37:0.35:106
chr11	122931213	rs1461497	C	T	1144.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.228;ClippingRankSum=0.000;DB;DP=255;ExcessHet=3.0103;FS=0.533;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.67;ReadPosRankSum=2.088;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:178,67:0.27:245
chr11	122931528	rs3057456	AAC	A	1179.73	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:70,36:0.34:106
chr11	122931625	rs41361350	G	A	153.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:9,7:0.44:16
chr11	122932123	rs10892958	C	G	189.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:16,10:0.38:26
chr11	122945667	.	G	GT	54.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.665;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.61;ReadPosRankSum=0.899;SOR=0.458;set=HC	GT:AD:AF:DP	0/1:25,9:0.26:34
chr11	123065683	rs2302605	C	T	5647.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:2,216:0.99:218
chr11	123154894	rs149387350	TTC	T	1773.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=68.31;QD=35.47;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr11	123306172	rs17671708	T	C	5522.77	.	AC=1;AF=0.500;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	0/1:126,252:0.67:378
chr11	123431391	rs71753637	CGTGTGTGT	C,CGTGT	2131.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.07;QD=38.07;SOR=1.179;set=HC	GT:AD:AF:DP	1/2:0,34,22:0.61,0.39:56
chr11	123455101	rs113013432	T	TG	1207.73	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:4,32:0.89:36
chr11	123455109	rs115338953	G	A	1132.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:7,27:0.79:34
chr11	123455124	rs116184013	G	A	370.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.547;ClippingRankSum=-0.000;DB;DP=25;ExcessHet=3.0103;FS=2.158;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.623;QD=24.72;ReadPosRankSum=-2.513;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:7,8:0.53:15
chr11	123464637	rs1148101	G	C	499.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:23,23:0.50:46
chr11	123464721	rs2271631	A	G	1308.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:83,69:0.45:152
chr11	123477352	rs2279519	G	A	539.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:61,29:0.32:90
chr11	123479150	rs1148088	G	A	871.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:72,45:0.38:117
chr11	123480981	rs10893053	T	C	1658.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:229,101:0.31:330
chr11	123485444	rs732211	T	C	1778.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.526;ClippingRankSum=0.000;DB;DP=314;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.76;ReadPosRankSum=0.107;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:208,101:0.33:309
chr11	123485561	rs1275061	T	C	1514.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:163,85:0.34:248
chr11	123504673	rs1148111	C	G	1295.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:34,49:0.59:83
chr11	123504959	rs1148110	C	G	1459.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:19,61:0.76:80
chr11	123524295	rs68105605	T	A	75.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:17,5:0.23:22
chr11	123596703	rs3183878	A	C	2747.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:37,117:0.76:154
chr11	123597804	rs679597	A	G	669.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:14,26:0.65:40
chr11	123598941	rs2282644	T	C	1434.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:148,80:0.35:228
chr11	123599044	rs675172	T	C	2461.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:50,106:0.68:156
chr11	123600475	rs1144507	A	G	3142.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:87,145:0.62:232
chr11	123676231	rs4936845	G	T	1526.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:190,82:0.30:272
chr11	123753937	rs1939927	A	G	3545.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr11	123754073	rs4587739	A	T	192.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.525;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.75;ReadPosRankSum=-0.737;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:54,16:0.23:70
chr11	123754844	rs10893099	T	C	7337.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr11	123777049	rs10750249	G	T	1840.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr11	123777302	rs17127947	T	G	2826.77	.	AC=1;AF=0.500;AN=2;DB;DP=453;set=Intersection	GT:AD:AF:DP	0/1:290,155:0.35:445
chr11	123777412	rs17127950	A	G	2164.77	.	AC=1;AF=0.500;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	0/1:271,124:0.31:395
chr11	123777497	rs10750250	G	A	9469.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:0,343:1.00:343
chr11	123777536	rs7926767	G	A	8943.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr11	123777861	rs61748875	T	C	2955.77	.	AC=1;AF=0.500;AN=2;DB;DP=495;set=Intersection	GT:AD:AF:DP	0/1:329,162:0.33:491
chr11	123777986	rs7942047	T	C	5390.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr11	123778031	rs7927385	G	A	2806.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr11	123811344	rs11219362	C	T	712.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:13,27:0.68:40
chr11	123813453	rs41364544	T	C	240.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:16,10:0.38:26
chr11	123847473	rs55944888	A	G	1851.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:24,83:0.78:107
chr11	123848121	rs17686210	T	C	3716.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:107,161:0.60:268
chr11	123848212	rs17759513	C	T	3597.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:116,152:0.57:268
chr11	123848516	rs35674999	C	A	4324.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:88,183:0.68:271
chr11	123886307	rs79057843	CA	TG	29244.77	.	AC=2;AF=1.00;AN=2;DB;DP=653;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,651:1.00:651
chr11	123886681	rs1893766	A	G	19336.77	.	AC=2;AF=1.00;AN=2;DB;DP=787;set=Intersection	GT:AD:AF:DP	1/1:25,762:0.97:787
chr11	123886865	rs4084209	T	A	24476.77	.	AC=2;AF=1.00;AN=2;DB;DP=878;set=Intersection	GT:AD:AF:DP	1/1:0,873:1.00:873
chr11	123886984	rs4936880	A	G	13102.77	.	AC=2;AF=1.00;AN=2;DB;DP=482;set=Intersection	GT:AD:AF:DP	1/1:3,471:0.99:474
chr11	123887164	rs4936881	A	C	13211.77	.	AC=2;AF=1.00;AN=2;DB;DP=494;set=Intersection	GT:AD:AF:DP	1/1:2,478:1.00:480
chr11	123887184	rs4936882	T	G	11046.77	.	AC=2;AF=1.00;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	1/1:0,392:1.00:392
chr11	123887314	rs517598	T	A	1374.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr11	123893987	rs142337884	G	A	777.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.406;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=4.742;MLEAC=1;MLEAF=0.500;MQ=39.96;MQRankSum=-1.029;QD=17.28;ReadPosRankSum=0.141;SOR=1.688;set=HC	GT:AD:AF:DP	0/1:16,29:0.64:45
chr11	123894119	rs12366219	A	G	3348.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.506;ClippingRankSum=0.000;DB;DP=226;ExcessHet=3.0103;FS=0.754;MLEAC=1;MLEAF=0.500;MQ=46.57;MQRankSum=-0.092;QD=15.08;ReadPosRankSum=-0.226;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:77,145:0.65:222
chr11	123894136	rs28499345	A	G	8999.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr11	123909627	rs11219420	T	C	13099.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.115;ClippingRankSum=0.000;DB;DP=293;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.12;MQRankSum=0.981;QD=45.02;ReadPosRankSum=-0.929;SOR=1.128;set=HC	GT:AD:AF:DP	1/1:2,289:0.99:291
chr11	123909637	rs4936889	G	T	13997.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.001;ClippingRankSum=0.000;DB;DP=339;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.94;MQRankSum=1.222;QD=41.54;ReadPosRankSum=-1.183;SOR=1.028;set=HC	GT:AD:AF:DP	1/1:2,335:0.99:337
chr11	123909695	rs3894197	G	C	12282.77	.	AC=2;AF=1.00;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	1/1:0,454:1.00:454
chr11	123994657	rs4144889	T	C	62.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr11	124007398	.	C	CCCTT	803.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.047;ClippingRankSum=0.000;DP=170;ExcessHet=3.0103;FS=2.889;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=0.850;QD=17.10;ReadPosRankSum=1.704;SOR=0.207;set=HC	GT:AD:AF:DP	0/1:23,24:0.51:47
chr11	124007456	rs139925476	A	C	40.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.468;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=-0.169;QD=0.93;ReadPosRankSum=1.861;SOR=0.202;set=HC	GT:AD:AF:DP	0/1:39,5:0.11:44
chr11	124007457	.	T	C	56.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.153;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=0.063;QD=1.26;ReadPosRankSum=0.957;SOR=0.193;set=HC	GT:AD:AF:DP	0/1:39,6:0.13:45
chr11	124007734	rs138354548	C	T	798.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:31,39:0.56:70
chr11	124015994	rs1056615	C	T	2032.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:212,120:0.36:332
chr11	124016366	rs2282505	C	T	191.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:16,9:0.36:25
chr11	124016740	rs9326269	A	T	896.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:49,44:0.47:93
chr11	124029037	rs4936895	G	A	2658.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr11	124029075	rs4935866	G	A	4656.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr11	124029541	rs4936896	A	G	15478.77	.	AC=2;AF=1.00;AN=2;DB;DP=594;set=Intersection	GT:AD:AF:DP	1/1:0,591:1.00:591
chr11	124056377	rs2512228	T	C	1279.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:198,76:0.28:274
chr11	124056566	rs7937809	G	A	2273.77	.	AC=1;AF=0.500;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	0/1:251,124:0.33:375
chr11	124056732	rs2512227	T	G	1429.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:170,80:0.32:250
chr11	124056787	rs2512226	G	A	1767.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.487;ClippingRankSum=0.000;DB;DP=251;ExcessHet=3.0103;FS=0.480;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.13;ReadPosRankSum=-0.175;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:157,91:0.37:248
chr11	124086175	rs2508890	T	C	5236.77	.	AC=1;AF=0.500;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	0/1:111,201:0.64:312
chr11	124095319	rs141204263	AG	A	5113.73	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:83,185:0.69:268
chr11	124095647	rs2466615	A	C	7962.77	.	AC=1;AF=0.500;AN=2;DB;DP=551;MQ=59.97;set=Intersection	GT:AD:AF:DP	0/1:206,336:0.62:542
chr11	124095884	rs2466614	A	G	10943.77	.	AC=1;AF=0.500;AN=2;DB;DP=778;set=Intersection	GT:AD:AF:DP	0/1:262,498:0.66:760
chr11	124096247	rs2466613	G	A	8430.77	.	AC=1;AF=0.500;AN=2;DB;DP=618;set=Intersection	GT:AD:AF:DP	0/1:240,373:0.61:613
chr11	124096275	rs2512268	T	C	16647.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.697;ClippingRankSum=0.000;DB;DP=702;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.86;MQRankSum=-5.899;QD=24.02;ReadPosRankSum=0.817;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:278,415:0.60:693
chr11	124096275	.	TTG	CTA	2944	.	AC=1;AF=0.500;AN=2;BRF=0.5;FR=0.5000;HP=1;HapScore=1;MGOF=14;MMLQ=24;MQ=58.02;NF=134;NR=143;PP=2944;QD=20;SC=TTTTATACTATTGTTGTGCCC;SbPval=0.53;Source=Platypus;TC=454;TCF=220;TCR=234;TR=277;WE=124096285;WS=124096265;set=Platypus	GT:AD:AF:DP	1/0:177,277:0.61:454
chr11	124096277	rs2466612	G	A	16647.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.371;ClippingRankSum=0.000;DB;DP=710;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.89;MQRankSum=-5.677;QD=23.75;ReadPosRankSum=1.025;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:280,421:0.60:701
chr11	124120302	rs2512239	A	G	467.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr11	124120338	rs2512240	A	C	539.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:6,21:0.78:27
chr11	124121199	rs4268525	G	C	8002.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr11	124134686	rs7931968	G	A	165.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:16,9:0.36:25
chr11	124134743	rs2466637	G	A	2153.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr11	124135009	rs2512168	G	A	8106.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr11	124135438	rs2512167	G	A	3681.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr11	124135481	rs2466701	C	T	3521.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr11	124135662	rs2512166	A	G	8880.77	.	AC=1;AF=0.500;AN=2;DB;DP=715;set=Intersection	GT:AD:AF:DP	0/1:299,408:0.58:707
chr11	124179656	rs4936917	G	T	63.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:16,5:0.24:21
chr11	124179835	rs4936918	C	T	875.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:140,57:0.29:197
chr11	124180082	rs4936919	A	G	1366.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:94,65:0.41:159
chr11	124180282	rs7107539	A	C	1684.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:170,83:0.33:253
chr11	124266912	rs28398895	A	G	3463.77	.	AC=1;AF=0.500;AN=2;DB;DP=583;set=Intersection	GT:AD:AF:DP	0/1:393,184:0.32:577
chr11	124267177	rs61910862	T	C	1008.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.158;ClippingRankSum=0.000;DB;DP=295;ExcessHet=3.0103;FS=16.357;MLEAC=1;MLEAF=0.500;MQ=56.08;MQRankSum=-13.880;QD=3.44;ReadPosRankSum=-0.022;SOR=1.561;set=HC	GT:AD:AF:DP	0/1:222,71:0.24:293
chr11	124267189	rs507335	T	C	772.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.342;ClippingRankSum=0.000;DB;DP=251;ExcessHet=3.0103;FS=6.906;MLEAC=1;MLEAF=0.500;MQ=55.62;MQRankSum=-12.181;QD=3.10;ReadPosRankSum=-0.255;SOR=1.206;set=HC	GT:AD:AF:DP	0/1:191,58:0.23:249
chr11	124293767	rs2188707	G	A	1734.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr11	124294236	rs4057749	A	G	2850.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:59,126:0.68:185
chr11	124294377	rs4057750	A	G	5679.77	.	AC=1;AF=0.500;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	0/1:134,246:0.65:380
chr11	124294703	rs10750270	T	C	1010.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:115,57:0.33:172
chr11	124309966	rs10893221	T	C	600.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:52,26:0.33:78
chr11	124310622	rs4296049	A	G	2030.77	.	AC=1;AF=0.500;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	0/1:252,115:0.31:367
chr11	124440362	rs55861866	C	G	1805.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:220,97:0.31:317
chr11	124440617	rs12792184	C	T	11122.77	.	AC=2;AF=1.00;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	1/1:2,400:1.00:402
chr11	124493199	rs678132	C	A	4854.77	.	AC=1;AF=0.500;AN=2;DB;DP=996;set=Intersection	GT:AD:AF:DP	0/1:696,291:0.29:987
chr11	124493411	rs679079	G	A	506.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:51,25:0.33:76
chr11	124494780	rs113773557	A	AT	825.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr11	124519664	rs77575510	G	A	2103.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:57,98:0.63:155
chr11	124539236	rs512225	C	T	1882.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:160,102:0.39:262
chr11	124610011	rs11399333	C	CG	970.73	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:84,44:0.34:128
chr11	124624705	.	T	TA	307.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.615;ClippingRankSum=0.000;DP=171;ExcessHet=3.0103;FS=4.637;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.23;ReadPosRankSum=1.702;SOR=0.337;set=HC	GT:AD:AF:DP	0/1:101,37:0.27:138
chr11	124631942	rs189252323	C	T	2168.77	.	AC=1;AF=0.500;AN=2;DB;DP=510;set=Intersection	GT:AD:AF:DP	0/1:363,144:0.28:507
chr11	124670069	rs183501631	G	A	858.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:71,47:0.40:118
chr11	124739332	rs11219820	A	C	266.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr11	124739988	rs4936957	T	C	2098.77	.	AC=1;AF=0.500;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	0/1:251,115:0.31:366
chr11	124740410	rs3923890	A	T	271.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:62,19:0.23:81
chr11	124740691	rs7925879	A	G	511.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:55,25:0.31:80
chr11	124746198	rs199932669	T	A	313.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:15,15:0.50:30
chr11	124747333	rs10790713	A	G	655.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:58,28:0.33:86
chr11	124747837	rs7933204	G	A	3066.77	.	AC=1;AF=0.500;AN=2;DB;DP=519;set=Intersection	GT:AD:AF:DP	0/1:345,167:0.33:512
chr11	124749584	rs3802905	C	G	1473.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:142,72:0.34:214
chr11	124750232	rs4366494	C	T	232.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:27,12:0.31:39
chr11	124766591	rs4078483	C	G	1929.77	.	AC=1;AF=0.500;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	0/1:272,112:0.29:384
chr11	124767290	rs11219832	C	T	387.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.046;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=-0.512;QD=2.94;ReadPosRankSum=0.470;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:103,29:0.22:132
chr11	124789755	rs3802904	T	C	422.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.699;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=1.732;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.58;ReadPosRankSum=1.358;SOR=0.889;set=HC	GT:AD:AF:DP	0/1:89,29:0.25:118
chr11	124790922	rs10893303	C	A	88.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:19,7:0.27:26
chr11	124792173	rs10893304	C	G	691.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:99,43:0.30:142
chr11	124793682	rs10790715	T	C	1327.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:195,82:0.30:277
chr11	124793716	rs10790716	G	A	1420.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:194,85:0.30:279
chr11	124794585	rs112797967	C	T	5521.77	.	AC=1;AF=0.500;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	0/1:101,242:0.71:343
chr11	124824839	rs12272437	T	C	1337.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:22,48:0.69:70
chr11	124829914	rs7482800	T	A	1217.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:22,54:0.71:76
chr11	124856563	rs146292043	CTG	C	926.87	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.413;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.79;MQRankSum=0.591;QD=19.31;ReadPosRankSum=-0.258;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:8,40:0.83:48
chr11	124856610	rs11219863	T	C	757.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.141;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=2.682;MLEAC=1;MLEAF=0.500;MQ=59.82;MQRankSum=0.000;QD=6.48;ReadPosRankSum=-2.553;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:84,33:0.28:117
chr11	124856951	rs4608089	C	T	1281.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr11	124857708	rs4936966	G	A	15210.77	.	AC=1;AF=0.500;AN=2;DB;DP=1026;set=Intersection	GT:AD:AF:DP	0/1:340,668:0.66:1008
chr11	124862514	rs6590113	A	G	2555.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:57,113:0.66:170
chr11	124863136	rs7951202	C	A	1360.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.706;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=2.611;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.84;ReadPosRankSum=1.994;SOR=0.468;set=HC	GT:AD:AF:DP	0/1:39,67:0.63:106
chr11	124863249	rs11219864	G	C	188.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:8,10:0.56:18
chr11	124873610	rs12793774	T	C	477.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:4,18:0.82:22
chr11	124873755	rs72518768	CT	C	5950.73	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:66,183:0.73:249
chr11	124874914	rs12286897	A	G	530.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:13,25:0.66:38
chr11	124875124	rs35971753	T	C	1151.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:32,54:0.63:86
chr11	124908352	rs7107487	T	C	194.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:14,9:0.39:23
chr11	124910335	rs4491235	G	A	1491.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr11	124933351	rs12791554	C	T	2713.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:60,124:0.67:184
chr11	124946809	rs61912692	C	T	1224.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:134,69:0.34:203
chr11	124946817	rs12276292	C	A	4281.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.301;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=4.733;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.92;ReadPosRankSum=-0.291;SOR=0.416;set=HC	GT:AD:AF:DP	0/1:65,114:0.64:179
chr11	124946822	rs75298200	TC	GT	2158.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.042;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=2.138;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.41;ReadPosRankSum=0.737;SOR=0.511;set=HC	GT:AD:AF:DP	0/1:64,97:0.60:161
chr11	124947149	rs12276567	G	A	1751.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:61,80:0.57:141
chr11	124947396	rs55752830	A	G	3018.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:83,139:0.63:222
chr11	124949044	rs33932952	C	T	1477.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:168,84:0.33:252
chr11	124949665	rs55889403	A	G	1285.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.919;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=0.558;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.06;ReadPosRankSum=-1.421;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:111,71:0.39:182
chr11	124949690	rs56367722	T	C	977.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:97,53:0.35:150
chr11	124951311	rs75801851	T	C	2355.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:50,105:0.68:155
chr11	124951467	rs4396301	C	G	336.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:19,15:0.44:34
chr11	124954282	rs948270	A	G	7461.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr11	124954369	rs948269	G	C	913.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:20,41:0.67:61
chr11	124954652	rs4936976	G	C	9289.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:0,330:1.00:330
chr11	124954849	rs144576745	G	C	5547.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:88,224:0.72:312
chr11	124955032	rs948268	T	C	7676.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr11	124955274	rs3824925	C	T	1305.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:136,69:0.34:205
chr11	124955977	rs3808995	C	T	6095.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr11	124957803	rs7929462	C	T	508.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:31,25:0.45:56
chr11	124958122	rs3802808	A	G	2726.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr11	124967487	rs1043821	T	A	4034.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr11	124967678	rs3737350	A	G	3250.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr11	124972208	rs14065	A	G	6444.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr11	124972377	rs2155663	C	T	1634.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr11	124972518	rs2155664	A	G	9968.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.70;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,223:1.00:223
chr11	124972522	rs2155665	T	C	10116.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.37;SOR=0.803;set=HC	GT:AD:AF:DP	1/1:0,228:1.00:228
chr11	124972691	rs2155666	T	C	1123.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr11	125009529	rs11219919	G	A	3004.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr11	125009543	rs74844643	G	A	1377.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:25,61:0.71:86
chr11	125280041	rs3824919	G	A	7451.77	.	AC=1;AF=0.500;AN=2;DB;DP=499;set=Intersection	GT:AD:AF:DP	0/1:169,324:0.66:493
chr11	125280318	rs3824917	G	A	1574.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:25,57:0.70:82
chr11	125298871	rs595849	A	G	12900.77	.	AC=2;AF=1.00;AN=2;DB;DP=484;set=Intersection	GT:AD:AF:DP	1/1:0,479:1.00:479
chr11	125299738	rs3740894	C	T	1941.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:32,73:0.70:105
chr11	125316073	rs34504992	T	A	1554.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:24,62:0.72:86
chr11	125323965	rs11220082	C	T	1086.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr11	125326026	rs2241514	C	T	2343.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.048;ClippingRankSum=0.000;DB;DP=456;ExcessHet=3.0103;FS=1.925;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.16;ReadPosRankSum=0.288;SOR=0.891;set=HC	GT:AD:AF:DP	0/1:313,141:0.31:454
chr11	125442503	rs369141998	CT	C	760.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.095;ClippingRankSum=0.000;DB;DP=386;ExcessHet=3.0103;FS=3.110;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=1.581;QD=2.22;ReadPosRankSum=-0.260;SOR=0.500;set=HC	GT:AD:AF:DP	0/1:240,102:0.30:342
chr11	125442621	rs7101969	A	G	1142.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:24,46:0.66:70
chr11	125443429	rs1284351	T	C	2058.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:59,96:0.62:155
chr11	125443473	rs1284352	A	C	2248.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.198;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=1.249;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.71;ReadPosRankSum=2.052;SOR=0.626;set=HC	GT:AD:AF:DP	0/1:63,101:0.62:164
chr11	125445680	rs61493355	A	AT	736.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.495;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=2.198;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.47;ReadPosRankSum=-0.844;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:31,56:0.64:87
chr11	125452221	rs71045107	C	CT	651.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.150;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=1.792;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.33;ReadPosRankSum=-0.560;SOR=0.465;set=HC	GT:AD:AF:DP	0/1:57,46:0.45:103
chr11	125452300	rs55912941	A	AC	7428.73	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr11	125452313	rs4627097	A	G	2518.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:54,118:0.69:172
chr11	125462162	rs573173	A	G	6280.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr11	125467144	rs513209	C	A	3631.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.376;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=21.49;ReadPosRankSum=-0.524;SOR=1.129;set=HC	GT:AD:AF:DP	1/1:3,166:0.98:169
chr11	125478209	rs6590153	C	T	1657.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr11	125479363	rs2241502	G	A	5719.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr11	125479496	rs2241501	C	T	5143.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr11	125489788	rs525186	A	C	3007.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:1,104:0.99:105
chr11	125490765	rs74957637	A	T	462.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.834;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=1.943;MLEAC=1;MLEAF=0.500;MQ=60.40;MQRankSum=2.265;QD=3.38;ReadPosRankSum=-1.109;SOR=0.984;set=HC	GT:AD:AF:DP	0/1:91,46:0.34:137
chr11	125497466	rs491528	G	T	483.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr11	125499429	.	T	C	395.77	.	AC=1;AF=0.500;AN=2;DP=29;set=Intersection	GT:AD:AF:DP	0/1:12,17:0.59:29
chr11	125514274	rs541725	T	A	1989.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr11	125525195	rs506504	A	G	6114.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr11	125616483	rs498803	G	T	3770.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr11	125616502	rs2553829	T	A	4203.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr11	125617376	rs5795459	CT	C	2178.73	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr11	125617610	rs2114084	A	G	1938.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr11	125617763	rs76255138	C	G	931.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:115,52:0.31:167
chr11	125617908	rs2282539	G	A	690.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	125618731	rs7939499	T	C	708.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:4,30:0.88:34
chr11	125647712	rs522690	T	C	4080.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr11	125647982	rs1365081	C	T	1868.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:39,85:0.69:124
chr11	125648216	rs517463	C	T	838.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr11	125648321	rs10893426	C	T	1484.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:54,65:0.55:119
chr11	125648503	rs494361	G	A	14192.77	.	AC=2;AF=1.00;AN=2;DB;DP=547;set=Intersection	GT:AD:AF:DP	1/1:0,535:1.00:535
chr11	125659423	rs495869	A	C	980.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.138;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=0.572;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.56;ReadPosRankSum=1.385;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:158,57:0.27:215
chr11	125707761	rs11220236	A	C	1313.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:163,76:0.32:239
chr11	125708198	rs10160391	C	T	3497.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr11	125763566	rs141738016	TC	T	615.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:2,19:0.90:21
chr11	125763581	rs80185627	T	C	505.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.185;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=1.095;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.37;ReadPosRankSum=-0.174;SOR=0.954;set=HC	GT:AD:AF:DP	0/1:29,25:0.46:54
chr11	125763610	rs35423925	A	AT	753.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.240;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=0.882;QD=7.46;ReadPosRankSum=-0.987;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:47,54:0.53:101
chr11	125766044	rs549990	C	A	7930.77	.	AC=1;AF=0.500;AN=2;DB;DP=540;set=Intersection	GT:AD:AF:DP	0/1:179,351:0.66:530
chr11	125766173	rs622756	A	C	6660.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:1,231:1.00:232
chr11	125766204	rs600761	G	C	7145.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.38;SOR=1.908;set=HC	GT:AD:AF:DP	1/1:0,161:1.00:161
chr11	125766207	rs471980	C	T	6993.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.83;SOR=1.884;set=HC	GT:AD:AF:DP	1/1:0,156:1.00:156
chr11	125776216	rs34692223	A	ATT	1565.73	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:1,58:0.98:59
chr11	125776259	rs681416	G	C	863.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr11	125778074	rs5795465	AT	A	486.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.466;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=1.748;QD=4.35;ReadPosRankSum=-0.563;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:69,43:0.38:112
chr11	125780194	rs2272104	C	T	414.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:28,18:0.39:46
chr11	125780537	rs80214587	G	T	298.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:14,12:0.46:26
chr11	125788678	rs683155	T	C	2349.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:175,125:0.42:300
chr11	125791017	rs635819	C	T	77.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.132;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.55;ReadPosRankSum=-1.151;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:9,5:0.36:14
chr11	125795451	rs551167	G	A	1361.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:140,73:0.34:213
chr11	125810663	rs35718120	CTT	C	50.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.066;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=2.161;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.11;ReadPosRankSum=-0.249;SOR=0.250;set=HC	GT:AD:AF:DP	0/1:19,5:0.21:24
chr11	125810714	rs643038	T	C	49.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.063;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.62;ReadPosRankSum=-0.056;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:16,3:0.16:19
chr11	125810721	rs643051	G	A	49.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.485;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.93;ReadPosRankSum=0.000;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:14,3:0.18:17
chr11	125812875	rs592545	G	A	900.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.933;ClippingRankSum=0.000;DB;DP=217;ExcessHet=3.0103;FS=0.557;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.35;ReadPosRankSum=-0.020;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:146,61:0.29:207
chr11	125813527	rs555333	G	A	821.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:109,47:0.30:156
chr11	125825708	rs627761	A	G	2671.77	.	AC=1;AF=0.500;AN=2;DB;DP=513;set=Intersection	GT:AD:AF:DP	0/1:348,161:0.32:509
chr11	125830970	rs684535	A	T	6476.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr11	125848419	rs636641	A	C	531.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.871;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=0.826;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.15;ReadPosRankSum=1.190;SOR=0.821;set=HC	GT:AD:AF:DP	0/1:92,36:0.28:128
chr11	125850881	rs611548	C	G	566.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:84,35:0.29:119
chr11	125851055	rs564214	A	G	1885.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:172,103:0.37:275
chr11	125851181	rs684805	G	A	1381.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:179,79:0.31:258
chr11	125851300	rs624070	T	C	572.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:65,35:0.35:100
chr11	125859783	rs1939985	T	C	349.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:16,17:0.52:33
chr11	125864972	rs138741332	AAAC	A	1218.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.619;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.34;MQRankSum=1.139;QD=22.99;ReadPosRankSum=0.794;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:20,33:0.62:53
chr11	125867039	rs140720667	TATATAA	T	724.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.290;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=1.118;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.28;ReadPosRankSum=0.486;SOR=0.498;set=HC	GT:AD:AF:DP	0/1:38,21:0.36:59
chr11	125867053	rs11220309	G	T	2352.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr11	125871735	rs516664	C	T	412.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:103,31:0.23:134
chr11	125873639	rs512761	G	T	343.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr11	126045830	rs7105310	C	G	1177.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:93,56:0.38:149
chr11	126074192	rs2276312	A	G	1093.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:143,65:0.31:208
chr11	126080757	rs608367	T	C	3894.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr11	126081336	rs587891	T	C	8727.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chr11	126081403	rs2282580	T	C	11139.77	.	AC=2;AF=1.00;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	1/1:3,426:0.99:429
chr11	126134698	rs638766	T	C	1890.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr11	126139100	rs1786702	T	C	2960.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr11	126139313	rs1786703	T	A	7140.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr11	126141370	rs148346044	A	C	1589.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:46,72:0.61:118
chr11	126142764	rs2298452	C	T	1168.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:37,50:0.57:87
chr11	126145931	rs2276025	T	C	2667.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:56,114:0.67:170
chr11	126146244	rs56321210	C	T	1855.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr11	126146800	rs73017360	C	G	885.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:20,39:0.66:59
chr11	126147713	rs594318	C	G	530.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:38,25:0.40:63
chr11	126161490	rs614700	T	C	3733.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr11	126162468	rs3802813	G	A	5264.77	.	AC=1;AF=0.500;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	0/1:138,239:0.63:377
chr11	126163124	rs609634	C	T	3610.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr11	126163691	rs611953	A	G	2732.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr11	126164349	rs625413	T	C	3595.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr11	126174038	rs3740915	C	T	4233.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:88,192:0.69:280
chr11	126174164	rs695029	C	T	1288.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.194;ClippingRankSum=0.000;DB;DP=272;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.583;QD=4.81;ReadPosRankSum=0.967;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:191,77:0.29:268
chr11	126176478	rs201095573	C	CTGGGGA	689.73	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:47,19:0.29:66
chr11	126176578	rs637462	G	A	3299.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:82,152:0.65:234
chr11	126213395	rs240536	T	C	4488.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:98,190:0.66:288
chr11	126228258	rs77137587	A	T	2454.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:59,113:0.66:172
chr11	126294817	rs948052	G	A	2560.77	.	AC=1;AF=0.500;AN=2;DB;DP=448;set=Intersection	GT:AD:AF:DP	0/1:298,144:0.33:442
chr11	126301449	rs3802816	T	C	901.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:94,51:0.35:145
chr11	126301481	rs3802817	T	A	448.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:57,22:0.28:79
chr11	126305279	rs4937132	C	G	980.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:102,52:0.34:154
chr11	126315024	rs3802819	T	C	12431.77	.	AC=2;AF=1.00;AN=2;DB;DP=488;set=Intersection	GT:AD:AF:DP	1/1:0,480:1.00:480
chr11	126316610	rs1574534	C	T	3260.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr11	126343135	rs12786235	A	C	717.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.15;SOR=6.932;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr11	126396674	rs674537	G	A	2455.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr11	126526181	rs523249	A	G	278.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:42,17:0.29:59
chr11	126858275	rs560163	C	T	131.18	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.887;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=16.40;ReadPosRankSum=-0.674;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:1,7:0.88:8
chr11	126858322	rs634571	C	G	252.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:4,13:0.76:17
chr11	126858392	rs670637	A	G	331.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chr11	126858406	rs634171	A	T	331.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chr11	126858484	rs558276	T	C	156.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:4,7:0.64:11
chr11	126873592	rs494442	C	T	8556.77	.	AC=1;AF=0.500;AN=2;DB;DP=622;MQ=60.09;set=Intersection	GT:AD:AF:DP	0/1:223,391:0.64:614
chr11	126873721	rs11377295	G	GC	6736.73	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr11	126968477	rs10893631	C	T	3675.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:99,163:0.62:262
chr11	128443083	rs7935676	G	C	3300.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr11	128443099	rs7935393	A	C	2782.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr11	128638216	rs35044982	TG	T	4704.73	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:66,177:0.73:243
chr11	128652012	rs639336	G	T	9832.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:0,348:1.00:348
chr11	128652053	rs3216814	A	AG	2060.73	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:119,66:0.36:185
chr11	128679211	rs630797	G	C	6022.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr11	128772452	rs11221503	C	T	1278.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:26,56:0.68:82
chr11	128773413	rs4937387	T	C	3162.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:59,144:0.71:203
chr11	128781339	rs6590357	T	C	14626.77	.	AC=2;AF=1.00;AN=2;DB;DP=554;set=Intersection	GT:AD:AF:DP	1/1:1,534:1.00:535
chr11	128781978	rs7118824	T	G	14194.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:0,339:1.00:339
chr11	128782002	rs7118833	T	C	13690.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.64;SOR=1.029;set=HC	GT:AD:AF:DP	1/1:0,300:1.00:300
chr11	128782012	rs7102584	C	G	12375.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.84;SOR=1.033;set=HC	GT:AD:AF:DP	1/1:0,270:1.00:270
chr11	128786139	rs61176061	A	AGATGGATG	680.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.38;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr11	128786294	rs4937391	G	A	3078.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:54,128:0.70:182
chr11	128804789	rs2155548	C	A	977.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr11	128805482	rs7947590	C	T	335.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:15,15:0.50:30
chr11	128805548	rs11601431	G	A	310.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:50,20:0.29:70
chr11	128846547	rs665619	C	A	4024.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:98,183:0.65:281
chr11	128857882	rs57177179	TAAG	T	3338.73	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:53,85:0.62:138
chr11	128868090	rs669678	G	A	415.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:15,16:0.52:31
chr11	128868239	rs670440	T	C	7355.77	.	AC=1;AF=0.500;AN=2;DB;DP=501;set=Intersection	GT:AD:AF:DP	0/1:166,330:0.67:496
chr11	128934033	rs61104154	T	TA	49.52	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.319;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.19;ReadPosRankSum=1.465;SOR=1.863;set=HC	GT:AD:AF:DP	0/1:2,6:0.75:8
chr11	129061849	rs2511810	G	T	932.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:8,32:0.80:40
chr11	129312660	rs3827487	C	T	525.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:68,31:0.31:99
chr11	129722553	rs558813	C	T	528.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:49,28:0.36:77
chr11	129734633	rs148264367	G	A	2447.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:63,111:0.64:174
chr11	129735677	rs3817614	G	T	323.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:30,19:0.39:49
chr11	129743012	rs1650826	A	G	1267.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:119,67:0.36:186
chr11	129743075	rs111642801	C	G	738.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:83,39:0.32:122
chr11	129752991	rs2293664	G	C	905.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:58,42:0.42:100
chr11	129753900	rs2303663	T	C	1645.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:129,80:0.38:209
chr11	129754103	rs3214551	T	TG	2075.73	.	AC=1;AF=0.500;AN=2;DB;DP=229;MQ=60.05;set=Intersection	GT:AD:AF:DP	0/1:150,69:0.32:219
chr11	129754627	rs12574106	G	T	282.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.454;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.66;ReadPosRankSum=-0.901;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:33,17:0.34:50
chr11	129754644	rs1131972	A	G	336.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:40,19:0.32:59
chr11	129755669	rs1783914	G	A	1131.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr11	129758327	rs1650823	G	A	868.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:93,46:0.33:139
chr11	129940806	rs112826009	A	G	1476.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr11	129998900	rs651935	T	C	4482.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr11	130060612	rs858704	A	G	3650.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr11	130064223	rs610005	A	G	6554.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr11	130064647	rs597661	G	A	12130.77	.	AC=2;AF=1.00;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	1/1:2,450:1.00:452
chr11	130064705	rs597576	A	G	5558.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr11	130064747	rs58417767	ATGTGTGTGTG	ATG,A	2557.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=88;set=Intersection	GT:AF:DP	1/1:0.98:66
chr11	130066335	rs476106	C	T	7927.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr11	130066372	rs858713	G	A	7818.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:2,303:0.99:305
chr11	130066452	rs11368852	G	GC	12594.73	.	AC=2;AF=1.00;AN=2;DB;DP=451;set=Intersection	GT:AD:AF:DP	1/1:1,418:1.00:419
chr11	130068554	rs11221995	C	T	2775.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr11	130069704	rs2276117	C	T	1539.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr11	130069790	rs613501	T	G	6977.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr11	130109936	.	ATTTTTTTT	A,ATTTTTTTTT	1197.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=54;set=Intersection	GT:AF:DP	1/2:0.72,0.23:39
chr11	130275749	rs11222085	T	C	1659.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:177,86:0.33:263
chr11	130278924	rs2291344	T	G	1205.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:20,48:0.71:68
chr11	130281488	rs2131535	G	A	7260.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr11	130284344	rs7106106	T	C	3758.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:77,158:0.67:235
chr11	130297948	rs7927048	C	G	1222.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.798;ClippingRankSum=0.000;DB;DP=250;ExcessHet=3.0103;FS=0.502;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.97;ReadPosRankSum=0.405;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:170,76:0.31:246
chr11	130297957	rs7942034	T	C	7994.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr11	130298117	rs10548872	GGCA	G,GGCAGCA	4703.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=173;set=Intersection	GT:AF:DP	1/2:0.25,0.70:131
chr11	130716157	rs7943757	C	T	3200.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:74,137:0.65:211
chr11	130731518	rs202084321	CCTT	C	978.73	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:7,25:0.78:32
chr11	130748131	rs3190331	A	G	897.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:17,33:0.66:50
chr11	130749715	rs2282528	A	G	4866.77	.	AC=1;AF=0.500;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:102,213:0.68:315
chr11	130750642	rs2298566	A	C	3672.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:96,176:0.65:272
chr11	130763772	rs3794143	C	T	3097.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:105,139:0.57:244
chr11	130773076	rs3751039	G	A	2443.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:73,117:0.62:190
chr11	130775688	rs3198419	C	T	2093.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:96,92:0.49:188
chr11	130775782	rs1865298	C	T	6732.77	.	AC=1;AF=0.500;AN=2;DB;DP=567;set=Intersection	GT:AD:AF:DP	0/1:241,319:0.57:560
chr11	130776524	rs4414223	T	C	972.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:23,38:0.62:61
chr11	130776613	rs4373936	A	G	3090.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:69,139:0.67:208
chr11	130776646	rs4586174	T	A	3307.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:70,154:0.69:224
chr11	130776690	rs6590536	C	T	2672.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:59,120:0.67:179
chr11	130776701	rs6590537	A	T	2287.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:52,101:0.66:153
chr11	130780015	rs1781	C	T	2538.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:58,111:0.66:169
chr11	130780225	rs681982	C	A	1912.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr11	130780270	rs1237478	C	A	999.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.25;SOR=3.477;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr11	130784754	rs3751037	C	G	3704.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:98,152:0.61:250
chr11	130784971	rs3751036	C	G	2663.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:57,96:0.63:153
chr11	131530083	rs2472253	G	C	2176.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr11	131531000	rs2739287	T	C	2931.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr11	131531015	rs2658857	T	G	2374.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr11	132081873	rs3824870	G	A	1610.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:29,68:0.70:97
chr11	132177563	rs2305272	C	T	4307.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:92,200:0.68:292
chr11	132177633	rs2305271	A	C	8891.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:0,341:1.00:341
chr11	132179950	rs71477755	CA	C	80.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.096;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.40;MQRankSum=1.083;QD=3.36;ReadPosRankSum=1.016;SOR=1.302;set=HC	GT:AD:AF:DP	0/1:12,12:0.50:24
chr11	132184394	rs730253	G	C	885.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:46,40:0.47:86
chr11	132200128	rs3837377	T	TA	1501.73	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:128,78:0.38:206
chr11	132204976	rs139579932	C	T	747.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.410;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=2.989;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.22;ReadPosRankSum=0.722;SOR=0.489;set=HC	GT:AD:AF:DP	0/1:129,48:0.27:177
chr11	132205215	rs8894	A	G	293.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:31,17:0.35:48
chr11	132306153	rs1940024	T	C	2119.77	.	AC=1;AF=0.500;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	0/1:293,121:0.29:414
chr11	132306403	rs2298479	G	A	207.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:34,13:0.28:47
chr11	132812642	rs12575270	G	A	161.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:27,9:0.25:36
chr11	133328729	.	T	C	42	.	AC=1;AF=0.500;AN=2;BRF=0.17;FR=0.5000;HP=2;HapScore=2;MGOF=11;MMLQ=26;MQ=60.0;NF=4;NR=0;PP=42;QD=19.1928031368;SC=TGTGTGTGTATATACACATAG;SbPval=1.0;Source=Platypus;TC=9;TCF=8;TCR=1;TR=4;WE=133328737;WS=133328719;set=Platypus	GT:AD:AF:DP	1/0:5,4:0.44:9
chr11	133788869	rs10791338	A	G	2895.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr11	133789013	.	C	CGGG	361.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.362;ClippingRankSum=-0.000;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=-0.000;QD=21.28;ReadPosRankSum=0.114;SOR=2.494;set=HC	GT:AD:AF:DP	0/1:4,13:0.76:17
chr11	133792021	rs596430	T	C	8030.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chr11	133794599	rs329670	TG	CT	8619.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr11	133800773	rs12796441	C	A	2071.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.04;SOR=2.461;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr11	133800773	.	CCG	ACA	1597	.	AC=2;AF=1.00;AN=2;BRF=0.38;FR=1.0000;HP=2;HapScore=1;MGOF=24;MMLQ=24;MQ=60.0;NF=29;NR=6;PP=1597;QD=47.1562249961;SC=GGAAGGGAGCCCGCAGAGTGC;SbPval=0.65;Source=Platypus;TC=37;TCF=30;TCR=7;TR=35;WE=133800783;WS=133800771;set=Platypus	GT:AD:AF:DP	1/1:2,35:0.95:37
chr11	133800775	rs11223628	G	A	2071.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.16;SOR=2.400;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr11	133814191	rs595986	A	G	6606.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr11	133815981	rs10894768	C	G	9059.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	1/1:0,334:1.00:334
chr11	133816224	rs10894769	C	T	1689.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr11	133940173	rs646763	G	C	1480.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:27,67:0.71:94
chr11	133940197	rs35590990	G	C	1186.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:18,53:0.75:71
chr11	134009860	rs2276266	T	C	5518.77	.	AC=1;AF=0.500;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	0/1:118,241:0.67:359
chr11	134010722	rs646998	A	G	1783.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:37,78:0.68:115
chr11	134013982	rs145515548	CAA	C	649.73	.	AC=1;AF=0.500;AN=2;DB;DP=23;MQ=60.47;set=Intersection	GT:AD:AF:DP	0/1:5,17:0.77:22
chr11	134014673	rs3216140	C	CCT	2070.73	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:29,53:0.65:82
chr11	134018656	rs610382	T	C	4154.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:118,185:0.61:303
chr11	134018850	.	AAC	A,AACACACAC	1902.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=98;set=Intersection	GT:AF:DP	1/2:0.45,0.49:78
chr11	134018980	rs12795060	G	A	5811.77	.	AC=1;AF=0.500;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	0/1:134,267:0.67:401
chr11	134019675	rs11223715	T	C	1150.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:120,65:0.35:185
chr11	134031836	rs3214800	C	CAA	424.73	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:10,13:0.57:23
chr11	134047243	rs2276265	T	C	3474.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;MQ=59.92;set=Intersection	GT:AD:AF:DP	0/1:76,151:0.67:227
chr11	134050868	rs3737446	C	T	1746.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:28,73:0.72:101
chr11	134054705	rs72431132	TACAC	T,TACACACAC	4248.73	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=196;set=Intersection	GT:AF:DP	0/1:0.77:160
chr11	134054711	rs80025556	C	T	1558.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:83,70:0.46:153
chr11	134064675	rs12573858	G	T	7939.77	.	AC=1;AF=0.500;AN=2;DB;DP=553;set=Intersection	GT:AD:AF:DP	0/1:195,356:0.65:551
chr11	134072616	.	G	GA	158.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.122;ClippingRankSum=0.000;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.467;QD=2.17;ReadPosRankSum=1.276;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:53,20:0.27:73
chr11	134072910	rs2305380	C	T	185.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:18,9:0.33:27
chr11	134073154	rs2305378	A	G	318.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:46,21:0.31:67
chr11	134074718	rs146098679	TCA	T	192.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.771;ClippingRankSum=0.000;DB;DP=555;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.37;ReadPosRankSum=-0.468;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:468,53:0.10:521
chr11	134093724	rs12803807	T	C	2773.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:60,118:0.66:178
chr11	134093888	rs11607699	G	C	10112.77	.	AC=1;AF=0.500;AN=2;DB;DP=654;set=Intersection	GT:AD:AF:DP	0/1:204,446:0.69:650
chr11	134105030	rs1259022	A	G	673.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:39,32:0.45:71
chr11	134128313	rs11223738	G	T	1982.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.815;ClippingRankSum=0.000;DB;DP=464;ExcessHet=3.0103;FS=0.591;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=1.626;QD=4.34;ReadPosRankSum=-1.056;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:331,126:0.28:457
chr11	134151975	rs472287	G	C	3180.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr11	134152030	rs10791352	G	A	4934.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr11	134161970	rs151242228	C	CT	828.73	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:94,49:0.34:143
chr11	134177275	rs2510356	C	T	1090.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr11	134180695	rs526507	G	C	1778.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr11	134181101	rs1144218	T	C	9035.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:0,318:1.00:318
chr11	134182135	rs751719	T	C	2354.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr11	134182375	rs2509062	G	A	2321.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr11	134182856	rs1144216	A	G	3532.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr11	134183450	rs1144215	T	C	668.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.450;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=3.554;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=19.67;ReadPosRankSum=1.487;SOR=0.707;set=HC	GT:AD:AF:DP	1/1:1,33:0.97:34
chr11	134184141	rs1144214	C	T	920.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr11	134188542	rs481252	T	C	9523.77	.	AC=2;AF=1.00;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	1/1:0,354:1.00:354
chr11	134188851	rs5795879	A	AT	734.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.071;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=2.155;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=0.934;QD=8.07;ReadPosRankSum=1.867;SOR=0.994;set=HC	GT:AD:AF:DP	0/1:35,56:0.62:91
chr11	134201864	rs3098651	T	C	1034.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr11	134217210	rs10894800	C	T	1853.77	.	AC=1;AF=0.500;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:211,108:0.34:319
chr11	134238518	rs78260611	C	T	3573.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;MQ=60.04;set=Intersection	GT:AD:AF:DP	0/1:91,157:0.63:248
chr11	134240142	rs10791358	T	C	3932.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:92,176:0.66:268
chr11	134241094	rs4937880	A	G	1545.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:37,62:0.63:99
chr11	134244426	rs876543	G	A	872.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:84,50:0.37:134
chr11	134244631	rs876542	T	C	1414.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:91,69:0.43:160
chr11	134251777	rs729687	C	A	2103.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:33,83:0.72:116
chr11	134252121	rs61908687	T	G	678.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:78,35:0.31:113
chr11	134856661	rs1971950	C	A	12349.77	.	AC=2;AF=1.00;AN=2;DB;DP=484;set=Intersection	GT:AD:AF:DP	1/1:3,470:0.99:473
chr12	235022	rs12822449	C	T	6387.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr12	235126	rs112633842	G	GC	4968.73	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr12	235143	rs11610983	G	C	3160.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr12	248202	rs56204927	C	G	1901.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:70,76:0.52:146
chr12	250130	rs12321262	T	C	825.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:50,35:0.41:85
chr12	250239	rs2291928	A	G	2475.77	.	AC=1;AF=0.500;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	0/1:196,135:0.41:331
chr12	271022	rs12579600	G	A	882.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr12	271373	rs4980805	A	G	1663.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr12	271386	rs11307485	CT	C	264.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.847;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.02;ReadPosRankSum=-1.681;SOR=0.474;set=HC	GT:AD:AF:DP	0/1:13,20:0.61:33
chr12	274568	.	T	C	2664.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.012;ClippingRankSum=0.000;DP=257;ExcessHet=3.0103;FS=0.982;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.37;ReadPosRankSum=-0.680;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:132,125:0.49:257
chr12	274572	rs11061700	G	C	9379.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.26;SOR=1.272;set=HC	GT:AD:AF:DP	1/1:0,266:1.00:266
chr12	274647	rs4980859	T	C	4045.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:171,189:0.53:360
chr12	274839	rs2291923	T	C	2374.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:89,111:0.56:200
chr12	275065	rs2291922	A	G	2793.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:118,129:0.52:247
chr12	280349	rs2291919	C	A	4535.77	.	AC=1;AF=0.500;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	0/1:236,215:0.48:451
chr12	283642	rs2291917	C	T	440.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:30,22:0.42:52
chr12	284058	rs216230	T	C	17262.77	.	AC=2;AF=1.00;AN=2;DB;DP=644;set=Intersection	GT:AD:AF:DP	1/1:0,637:1.00:637
chr12	301843	rs646569	A	G	4636.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr12	305415	.	CCACA	C,CCA	1710.73	.	AC=1,0;AF=0.500,0.00;ALERT;AN=2;DP=105;set=Intersection	GT:AF:DP	0/1:0.45:103
chr12	305419	.	AC	TT	1801	.	AC=1;AF=0.500;AN=2;BRF=0.49;FR=0.5000;HP=2;HapScore=3;MGOF=5;MMLQ=28;MQ=60.0;NF=11;NR=15;PP=1801;QD=71.3256874947;SC=GGCACTCCACACAGACAAACT;SbPval=0.62;Source=Platypus;TC=63;TCF=28;TCR=35;TR=26;WE=305428;WS=305405;set=Platypus	GT:AD:AF:DP	0/1:37,26:0.41:63
chr12	305420	.	C	CTT	1710.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.300;ClippingRankSum=0.000;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.77;ReadPosRankSum=-0.141;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:56,46:0.45:102
chr12	305566	rs79352163	C	T	191.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr12	309753	rs7967868	C	T	3762.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr12	310113	rs4980863	A	G	643.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:29,27:0.48:56
chr12	310901	rs216248	T	C	2240.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:127,109:0.46:236
chr12	311816	rs216249	C	T	209.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:10,9:0.47:19
chr12	311949	rs216250	A	G	2049.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:74,94:0.56:168
chr12	312200	rs216251	C	T	359.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:14,16:0.53:30
chr12	319111	rs526690	T	C	5077.77	.	AC=1;AF=0.500;AN=2;DB;DP=518;set=Intersection	GT:AD:AF:DP	0/1:258,255:0.50:513
chr12	319125	rs557881	A	G	4663.77	.	AC=1;AF=0.500;AN=2;DB;DP=469;set=Intersection	GT:AD:AF:DP	0/1:237,227:0.49:464
chr12	330315	rs570680	T	G	3532.77	.	AC=1;AF=0.500;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	0/1:201,176:0.47:377
chr12	347068	rs2289957	T	A	883.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:27,40:0.60:67
chr12	351711	rs525797	T	G	1464.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:63,64:0.50:127
chr12	406292	rs2229351	G	A	1775.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:88,88:0.50:176
chr12	416046	rs35042439	C	CT	462.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.604;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.58;ReadPosRankSum=0.134;SOR=0.841;set=HC	GT:AD:AF:DP	0/1:48,35:0.42:83
chr12	418916	rs4980877	C	T	2152.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:138,104:0.43:242
chr12	427165	.	CA	C	76.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.615;ClippingRankSum=0.000;DP=52;ExcessHet=3.0103;FS=1.569;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.53;ReadPosRankSum=0.887;SOR=0.378;set=HC	GT:AD:AF:DP	0/1:36,14:0.28:50
chr12	427575	rs11062385	A	G	2563.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:151,127:0.46:278
chr12	430075	rs79485732	T	A	1985.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:109,95:0.47:204
chr12	432654	rs3213750	T	A	312.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:14,14:0.50:28
chr12	432666	rs3213751	G	C	241.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:13,13:0.50:26
chr12	442620	rs4980885	C	T	4065.77	.	AC=1;AF=0.500;AN=2;DB;DP=491;set=Intersection	GT:AD:AF:DP	0/1:276,209:0.43:485
chr12	461269	.	CAAAA	C	152.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.437;ClippingRankSum=0.000;DP=60;ExcessHet=3.0103;FS=21.646;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=-0.570;QD=3.55;ReadPosRankSum=1.424;SOR=2.623;set=HC	GT:AD:AF:DP	0/1:31,12:0.28:43
chr12	464254	rs3759371	T	C	3619.77	.	AC=1;AF=0.500;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	0/1:182,174:0.49:356
chr12	495217	rs10774152	G	T	1004.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:28,42:0.60:70
chr12	496392	rs201508413	CA	C	121.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.049;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.90;ReadPosRankSum=-0.298;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:26,16:0.38:42
chr12	496439	rs7965303	A	T	321.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:31,18:0.37:49
chr12	496533	rs10848877	C	T	126.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr12	498267	.	CGG	C,CG	2871.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.682;ClippingRankSum=0.000;DP=273;ExcessHet=3.0103;FS=0.931;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=14.80;ReadPosRankSum=0.522;SOR=0.879;set=HC	GT:AD:AF:DP	1/2:30,109,55:0.56,0.28:194
chr12	527847	rs113437345	A	ACATT	838.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.106;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.64;ReadPosRankSum=2.386;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:23,22:0.49:45
chr12	537828	rs11062934	G	T	397.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.418;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=2.170;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.83;ReadPosRankSum=1.166;SOR=0.252;set=HC	GT:AD:AF:DP	0/1:14,17:0.55:31
chr12	537841	rs35713455	T	TA	1083.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.501;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.26;MQRankSum=0.375;QD=29.29;ReadPosRankSum=1.515;SOR=1.556;set=HC	GT:AD:AF:DP	1/1:2,35:0.95:37
chr12	539984	rs55854088	C	T	1920.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:83,82:0.50:165
chr12	540994	rs7310504	A	G	2942.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr12	547683	rs735295	T	C	674.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:59,37:0.39:96
chr12	550911	rs34054482	CT	C	1339.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.150;ClippingRankSum=0.000;DB;DP=318;ExcessHet=3.0103;FS=0.555;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=2.012;QD=4.98;ReadPosRankSum=0.591;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:123,146:0.54:269
chr12	619618	rs11830324	T	A	172.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:16,8:0.33:24
chr12	619660	.	AGGGAAACG	AGGGCTGGGCTGGGAAACG,A	553.73	.	AC=1,0;AF=0.500,0.00;AN=2;DP=43;set=Intersection	GT:AF:DP	0/1:0.38:42
chr12	619664	.	A	AGGG	885.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.552;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=14.606;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.60;ReadPosRankSum=1.232;SOR=3.760;set=HC	GT:AD:AF:DP	0/1:27,16:0.37:43
chr12	619665	.	A	AGTTGGCTGGGCTGGG	1221.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.839;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;FS=14.183;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.09;ReadPosRankSum=1.616;SOR=3.642;set=HC	GT:AD:AF:DP	0/1:27,15:0.36:42
chr12	619667	.	C	G	1523.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.851;ClippingRankSum=0.000;DP=60;ExcessHet=3.0103;FS=1.052;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.83;ReadPosRankSum=-2.395;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:28,31:0.53:59
chr12	619668	.	G	GGAGTTGGCTGGGCTGGGA	1513.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.185;ClippingRankSum=0.000;DP=60;ExcessHet=3.0103;FS=1.052;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.66;ReadPosRankSum=-2.486;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:28,31:0.53:59
chr12	619808	rs7306988	G	A	1230.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.876;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=11.066;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=0.675;QD=15.78;ReadPosRankSum=0.059;SOR=0.151;set=HC	GT:AD:AF:DP	0/1:23,55:0.71:78
chr12	655707	rs4980937	T	C	2145.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.048;ClippingRankSum=0.000;DB;DP=200;ExcessHet=3.0103;FS=1.152;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.00;ReadPosRankSum=-0.934;SOR=0.578;set=HC	GT:AD:AF:DP	0/1:92,103:0.53:195
chr12	658788	rs4980938	G	A	1664.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:90,71:0.44:161
chr12	658871	rs4980939	A	G	6015.77	.	AC=1;AF=0.500;AN=2;DB;DP=567;set=Intersection	GT:AD:AF:DP	0/1:278,276:0.50:554
chr12	660065	rs12423166	T	C	12993.77	.	AC=1;AF=0.500;AN=2;DB;DP=1137;set=Intersection	GT:AD:AF:DP	0/1:506,619:0.55:1125
chr12	661458	rs199821226	TACACACAC	T,TACACAC	2155.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=2.358;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.26;MQRankSum=0.506;QD=24.78;ReadPosRankSum=1.618;SOR=1.047;set=HC	GT:AD:AF:DP	1/2:4,51,32:0.59,0.37:87
chr12	661772	rs7314430	G	A	1758.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:52,73:0.58:125
chr12	662276	rs12423080	C	T	815.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:30,36:0.55:66
chr12	662448	rs758790	T	C	3982.77	.	AC=1;AF=0.500;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	0/1:205,184:0.47:389
chr12	663224	rs11063564	A	G	436.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:11,17:0.61:28
chr12	667910	rs12368256	A	G	4169.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.539;ClippingRankSum=0.000;DB;DP=200;ExcessHet=3.0103;FS=3.427;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.49;ReadPosRankSum=-0.562;SOR=0.491;set=HC	GT:AD:AF:DP	0/1:86,108:0.56:194
chr12	667915	rs61916654	C	T	4089.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.518;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=1.940;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.47;ReadPosRankSum=-1.637;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:78,104:0.57:182
chr12	668350	rs2072385	AC	CT	1315.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;JOINED;set=Intersection	GT:AD:AF:DP	0/1:54,36:0.40:90
chr12	675441	rs4980836	T	A	811.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:44,41:0.48:85
chr12	719663	rs2535404	C	T	1601.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:66,73:0.53:139
chr12	719681	rs2535405	G	A	2664.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr12	752327	rs6489690	C	A	11264.77	.	AC=2;AF=1.00;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	1/1:3,421:0.99:424
chr12	752998	rs9669247	G	A,T	4760.77	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=176;set=Intersection	GT:AF:DP	1/2:0.53,0.47:171
chr12	772458	rs3782851	C	T	3680.77	.	AC=1;AF=0.500;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	0/1:285,188:0.40:473
chr12	772673	rs4980959	C	A	1010.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:65,50:0.43:115
chr12	862641	rs3088353	T	G	1642.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr12	862989	rs3168640	T	C	15476.77	.	AC=2;AF=1.00;AN=2;DB;DP=580;set=Intersection	GT:AD:AF:DP	1/1:0,577:1.00:577
chr12	863152	rs11554421	G	A	3749.77	.	AC=1;AF=0.500;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	0/1:182,171:0.48:353
chr12	863517	rs3858703	G	A	5959.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr12	936468	rs2158502	C	G	5765.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr12	939302	rs10774466	A	G	7855.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:2,291:0.99:293
chr12	966208	rs2240284	G	A	941.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:28,36:0.56:64
chr12	968400	rs11064573	C	A	3072.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.760;ClippingRankSum=0.000;DB;DP=349;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.96;ReadPosRankSum=0.788;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:182,161:0.47:343
chr12	968489	rs2286006	T	C	4019.77	.	AC=1;AF=0.500;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	0/1:214,203:0.49:417
chr12	970093	rs11286613	CT	C	493.80	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.842;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.48;ReadPosRankSum=0.807;SOR=3.109;set=HC	GT:AD:AF:DP	0/1:7,36:0.84:43
chr12	974137	rs11441896	C	CA	986.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=21.45;SOR=4.743;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr12	974355	rs11441897	T	TC	13542.73	.	AC=1;AF=0.500;AN=2;DB;DP=874;set=Intersection	GT:AD:AF:DP	0/1:410,451:0.52:861
chr12	974404	rs7300829	T	C	10971.77	.	AC=1;AF=0.500;AN=2;DB;DP=951;set=Intersection	GT:AD:AF:DP	0/1:441,503:0.53:944
chr12	987482	rs1012729	G	A	11996.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.122;ClippingRankSum=0.000;DB;DP=457;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.42;ReadPosRankSum=1.908;SOR=0.814;set=HC	GT:AD:AF:DP	1/1:2,452:1.00:454
chr12	987533	rs5795952	C	CT	2365.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.074;ClippingRankSum=0.000;DB;DP=255;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.16;ReadPosRankSum=1.931;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:60,152:0.72:212
chr12	990912	rs956868	A	C	4009.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:157,184:0.54:341
chr12	993930	rs7300444	C	T	10372.77	.	AC=1;AF=0.500;AN=2;DB;DP=1085;set=Intersection	GT:AD:AF:DP	0/1:555,516:0.48:1071
chr12	994014	rs10849577	C	T	9041.77	.	AC=1;AF=0.500;AN=2;DB;DP=814;set=Intersection	GT:AD:AF:DP	0/1:391,415:0.51:806
chr12	994487	rs7955371	G	C	15532.77	.	AC=2;AF=1.00;AN=2;DB;DP=568;set=Intersection	GT:AD:AF:DP	1/1:0,556:1.00:556
chr12	995291	rs11450919	G	GT	566.73	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:42,37:0.47:79
chr12	999762	rs2255390	A	G	2581.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:157,125:0.44:282
chr12	1017197	rs4766334	C	T	5594.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr12	1022679	rs6413436	A	G	1034.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:54,50:0.48:104
chr12	1035947	rs6489763	C	A	1838.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr12	1040219	rs11571409	G	A	860.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.559;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.89;ReadPosRankSum=1.410;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:45,42:0.48:87
chr12	1040373	rs7303748	T	C	3018.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:173,153:0.47:326
chr12	1219286	rs7131703	T	C	2921.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr12	1221221	rs74679668	T	TAG	1150.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr12	1224917	rs7973282	A	G	888.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr12	1224972	rs7973392	A	C	4303.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.37;SOR=1.921;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr12	1224980	rs61912159	G	A	5002.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.34;SOR=1.788;set=HC	GT:AD:AF:DP	1/1:0,124:1.00:124
chr12	1290949	.	C	CA	190.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.291;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.54;ReadPosRankSum=-0.698;SOR=0.498;set=HC	GT:AD:AF:DP	0/1:25,17:0.40:42
chr12	1292399	rs111929784	CTA	C	4878.73	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:2,168:0.99:170
chr12	1313732	rs7977526	T	C	11975.77	.	AC=2;AF=1.00;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	1/1:0,451:1.00:451
chr12	1372114	rs2286031	A	G	1322.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr12	1589821	rs7315267	T	C	681.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:35,30:0.46:65
chr12	1589868	rs111377772	T	TGAA	2563.73	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:84,66:0.44:150
chr12	1589914	rs7315390	T	C	2686.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:154,128:0.45:282
chr12	1590013	rs11613546	C	T	4810.77	.	AC=1;AF=0.500;AN=2;DB;DP=488;MQ=60.04;set=Intersection	GT:AD:AF:DP	0/1:252,235:0.48:487
chr12	1590069	rs11609462	G	A	3878.77	.	AC=1;AF=0.500;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	0/1:174,184:0.51:358
chr12	1703322	.	A	AGCC	3569.73	.	AC=2;AF=1.00;AN=2;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr12	1748728	rs58317077	C	T	3320.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr12	1748766	rs6489313	G	A	4829.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr12	1748834	rs2270036	T	C	7566.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr12	1863728	rs11061971	A	T	729.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:36,35:0.49:71
chr12	1889823	rs767870	G	A	3531.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr12	1889920	rs10848575	TT	AA	1784.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.49;SOR=1.556;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr12	1902766	rs2058111	T	G	4721.77	.	AC=1;AF=0.500;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	0/1:204,224:0.52:428
chr12	1904726	rs3078853	G	GAC	1695.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr12	1905091	rs3815325	G	A	453.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:43,22:0.34:65
chr12	1919543	rs2286377	C	T	3869.77	.	AC=1;AF=0.500;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	0/1:155,168:0.52:323
chr12	1943384	rs79174514	G	A	1198.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:59,52:0.47:111
chr12	1949939	rs33972365	C	T	4347.77	.	AC=1;AF=0.500;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	0/1:211,204:0.49:415
chr12	1950011	rs58188909	A	AC	17529.73	.	AC=2;AF=1.00;AN=2;DB;DP=442;set=Intersection	GT:AD:AF:DP	1/1:0,437:1.00:437
chr12	1955664	rs7137553	G	T	1583.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.021;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.85;ReadPosRankSum=-0.526;SOR=0.750;set=HC	GT:AD:AF:DP	0/1:52,42:0.45:94
chr12	1955668	rs7138458	C	A	1693.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.195;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.61;ReadPosRankSum=-1.008;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:55,47:0.46:102
chr12	1955890	rs7137876	T	C	5387.77	.	AC=1;AF=0.500;AN=2;DB;DP=556;set=Intersection	GT:AD:AF:DP	0/1:281,272:0.49:553
chr12	1967900	.	T	C	1902.77	.	AC=1;AF=0.500;AN=2;DP=205;set=Intersection	GT:AD:AF:DP	0/1:104,96:0.48:200
chr12	1967947	rs2286369	C	G	866.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:47,35:0.43:82
chr12	1969435	rs2370057	G	C	2979.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr12	1983744	rs737102	T	C	1914.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:90,92:0.51:182
chr12	1983782	rs758160	C	T	2630.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:126,123:0.49:249
chr12	1988167	rs7966806	T	C	4473.77	.	AC=1;AF=0.500;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	0/1:211,219:0.51:430
chr12	1988912	rs73032440	G	A	2194.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:151,108:0.42:259
chr12	1989018	rs60945277	T	C	2029.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:139,106:0.43:245
chr12	1991971	rs55779143	A	G	2835.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:120,133:0.53:253
chr12	1993337	rs2429184	T	C	1296.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:51,52:0.50:103
chr12	1994363	rs60708075	G	C	344.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:18,13:0.42:31
chr12	1995042	rs10774003	A	G	395.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:24,16:0.40:40
chr12	1995118	rs61386831	C	T	1909.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:80,90:0.53:170
chr12	1995403	rs10735005	T	C	2574.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:106,124:0.54:230
chr12	2016550	rs112521420	A	ATTGTC	837.73	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:30,21:0.41:51
chr12	2016938	rs113797488	AGCCTGGTGAGTAT	A	1830.73	.	AC=1;AF=0.500;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	0/1:125,98:0.44:223
chr12	2019322	rs8181786	G	A	589.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:15,23:0.61:38
chr12	2022411	rs1558142	T	C	2009.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:90,97:0.52:187
chr12	2024092	rs73038195	T	C	4069.77	.	AC=1;AF=0.500;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	0/1:227,194:0.46:421
chr12	2024316	rs758157	A	G	6042.77	.	AC=1;AF=0.500;AN=2;DB;DP=673;set=Intersection	GT:AD:AF:DP	0/1:370,302:0.45:672
chr12	2038978	rs79802812	G	A	309.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.83;SOR=2.147;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr12	2039022	rs66541354	G	C	268.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.43;SOR=2.494;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr12	2039155	rs200831723	GGGGAGGAGGAGGAAGAGA	G	356.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.051;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.48;MQRankSum=3.495;QD=12.74;ReadPosRankSum=-0.795;SOR=0.460;set=HC	GT:AD:AF:DP	0/1:16,12:0.43:28
chr12	2039690	rs2429172	A	G	5542.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr12	2055266	rs7222	T	C	1250.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:66,57:0.46:123
chr12	2058245	rs2240612	T	C	1790.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:84,86:0.51:170
chr12	2062323	rs149912567	T	TTGC	5767.73	.	AC=1;AF=0.500;AN=2;DB;DP=505;set=Intersection	GT:AD:AF:DP	0/1:224,164:0.42:388
chr12	2077897	rs2470425	G	C	988.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:56,48:0.46:104
chr12	2100324	rs11062046	A	C	3744.77	.	AC=1;AF=0.500;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	0/1:225,188:0.46:413
chr12	2102623	rs12813534	A	G	622.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:30,28:0.48:58
chr12	2107036	rs2302098	T	C	486.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:46,28:0.38:74
chr12	2113348	rs7298333	A	C	21896.77	.	AC=2;AF=1.00;AN=2;DB;DP=809;set=Intersection	GT:AD:AF:DP	1/1:1,800:1.00:801
chr12	2224228	rs2299661	C	G	175.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:9,9:0.50:18
chr12	2659848	rs10848675	T	C	2931.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr12	2676683	rs2370602	C	T	2124.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr12	2690702	rs11832738	G	A	5390.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr12	2692186	rs3751254	T	G	1557.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr12	2706720	rs215983	G	C	9647.77	.	AC=2;AF=1.00;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	1/1:0,350:1.00:350
chr12	2721140	.	C	T	2289.77	.	AC=1;AF=0.500;AN=2;DP=247;set=Intersection	GT:AD:AF:DP	0/1:132,115:0.47:247
chr12	2743360	rs10713529	CT	C	247.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.492;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=3.233;MLEAC=1;MLEAF=0.500;MQ=60.47;MQRankSum=0.567;QD=11.26;ReadPosRankSum=-1.549;SOR=0.105;set=HC	GT:AD:AF:DP	1/1:2,20:0.91:22
chr12	2757756	rs2239127	T	C	3360.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr12	2757769	rs2239128	T	C	2396.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr12	2757782	rs2239129	C	T	2073.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr12	2760708	rs216045	G	A	9176.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:0,335:1.00:335
chr12	2760970	rs1990322	G	A	4034.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr12	2773855	rs7315556	G	A	1217.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr12	2774668	rs2302728	C	A	1327.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr12	2783476	rs7136355	T	C	2489.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr12	2788879	rs1051375	G	A	32575.77	.	AC=2;AF=1.00;AN=2;DB;DP=1202;set=Intersection	GT:AD:AF:DP	1/1:0,1188:1.00:1188
chr12	2791130	rs10848683	C	T	1632.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.65;SOR=4.863;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr12	2791130	.	CGA	TGG	707	.	AC=2;AF=1.00;AN=2;BRF=0.4;FR=1.0000;HP=1;HapScore=1;MGOF=10;MMLQ=24;MQ=60.0;NF=27;NR=2;PP=707;QD=26.2230301677;SC=AGGCACGTTCCGATGTGTGAG;SbPval=0.52;Source=Platypus;TC=33;TCF=31;TCR=2;TR=29;WE=2791140;WS=2791120;set=Platypus	GT:AD:AF:DP	1/1:4,29:0.88:33
chr12	2791132	rs10774053	A	G	1632.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.87;SOR=3.967;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr12	2791205	rs10774054	A	G	3810.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr12	2795255	rs2270373	C	T	7035.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:1,262:1.00:263
chr12	2851185	rs12319038	A	G	2731.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr12	2851259	rs12319097	A	G	4722.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr12	2851357	rs10774059	C	T	7828.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.79;QD=43.25;SOR=0.773;set=HC	GT:AD:AF:DP	1/1:0,181:1.00:181
chr12	2851365	rs4765989	T	C	7588.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.97;QD=44.90;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,169:1.00:169
chr12	2876636	rs4313632	A	G	3958.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr12	2968458	rs2215292	T	C	18214.77	.	AC=2;AF=1.00;AN=2;DB;DP=668;set=Intersection	GT:AD:AF:DP	1/1:0,662:1.00:662
chr12	2997058	.	C	CT	402.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.451;ClippingRankSum=0.000;DP=173;ExcessHet=3.0103;FS=0.747;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.52;ReadPosRankSum=-0.075;SOR=0.558;set=HC	GT:AD:AF:DP	0/1:114,46:0.29:160
chr12	3017219	rs10848733	A	G	2140.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:162,113:0.41:275
chr12	3018675	rs11305670	AT	A	1335.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.326;ClippingRankSum=0.000;DB;DP=224;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=0.994;QD=6.04;ReadPosRankSum=0.914;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:99,122:0.55:221
chr12	3018802	rs35490316	G	C	3337.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:162,152:0.48:314
chr12	3031358	rs2302283	T	C	1597.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:86,70:0.45:156
chr12	3039319	rs10848747	A	G	1025.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:32,43:0.57:75
chr12	3040029	rs10848749	C	T	1815.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:85,81:0.49:166
chr12	3046802	rs33973716	A	G	2994.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:121,147:0.55:268
chr12	3046964	rs35398310	A	AC	362.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=3.129;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.27;ReadPosRankSum=3.394;SOR=0.396;set=HC	GT:AD:AF:DP	0/1:54,31:0.36:85
chr12	3047466	rs2074987	G	A	1310.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:86,62:0.42:148
chr12	3049698	rs998814	T	C	6046.77	.	AC=1;AF=0.500;AN=2;DB;DP=569;set=Intersection	GT:AD:AF:DP	0/1:270,290:0.52:560
chr12	3049938	rs1047341	C	T	2937.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:112,125:0.53:237
chr12	3127652	rs2159411	A	G	6862.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr12	3130938	rs4759380	A	G	1549.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:63,73:0.54:136
chr12	3131206	rs3741952	T	C	3368.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:147,147:0.50:294
chr12	3131238	rs4759379	A	G	2323.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:77,98:0.56:175
chr12	3149483	rs7294804	A	G	10533.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:1,377:1.00:378
chr12	3310335	rs740777	C	T	1545.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:61,69:0.53:130
chr12	3310439	rs740776	C	T	2641.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.310;ClippingRankSum=0.000;DB;DP=283;ExcessHet=3.0103;FS=2.582;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.40;ReadPosRankSum=-0.953;SOR=0.559;set=HC	GT:AD:AF:DP	0/1:151,130:0.46:281
chr12	3310482	rs740775	C	G	2200.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:146,111:0.43:257
chr12	3315433	rs2058243	A	G	4496.77	.	AC=1;AF=0.500;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	0/1:221,219:0.50:440
chr12	3387521	rs651196	C	G	1343.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:54,51:0.49:105
chr12	3387555	rs651243	C	T	2054.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:90,97:0.52:187
chr12	3387697	rs16930370	T	C	5442.77	.	AC=1;AF=0.500;AN=2;DB;DP=648;set=Intersection	GT:AD:AF:DP	0/1:365,275:0.43:640
chr12	3389601	rs66501720	C	T	5153.77	.	AC=1;AF=0.500;AN=2;DB;DP=564;set=Intersection	GT:AD:AF:DP	0/1:305,255:0.46:560
chr12	3391032	rs564247	T	G	2810.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:182,141:0.44:323
chr12	3392118	rs11611152	C	G	1749.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:95,68:0.42:163
chr12	3392351	rs632887	A	G	4515.77	.	AC=1;AF=0.500;AN=2;DB;DP=466;set=Intersection	GT:AD:AF:DP	0/1:242,217:0.47:459
chr12	3409149	rs55979725	G	A	8929.77	.	AC=1;AF=0.500;AN=2;DB;DP=844;set=Intersection	GT:AD:AF:DP	0/1:399,434:0.52:833
chr12	3409277	rs7306401	C	T	11655.77	.	AC=2;AF=1.00;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	1/1:0,432:1.00:432
chr12	3490820	rs10848860	T	C	2279.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr12	3600967	rs757609	T	C	2424.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr12	3702219	rs4765741	A	G	1076.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:85,59:0.41:144
chr12	3736745	rs10848894	T	C	17411.77	.	AC=2;AF=1.00;AN=2;DB;DP=666;set=Intersection	GT:AD:AF:DP	1/1:0,652:1.00:652
chr12	3749874	rs7138453	T	C	3845.77	.	AC=1;AF=0.500;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	0/1:243,200:0.45:443
chr12	3750070	rs4766151	T	C	471.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:20,23:0.53:43
chr12	3751046	rs7297853	T	C	5568.77	.	AC=1;AF=0.500;AN=2;DB;DP=609;set=Intersection	GT:AD:AF:DP	0/1:325,276:0.46:601
chr12	3753975	rs7975304	T	G	767.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:28,33:0.54:61
chr12	3757548	rs887304	T	C	1183.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:63,57:0.47:120
chr12	3757923	rs758530	A	G	187.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr12	3787956	rs242019	A	C	3041.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr12	3789551	rs35179033	C	CA	1241.73	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:64,43:0.40:107
chr12	3948550	rs12319851	A	G	1839.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:52,73:0.58:125
chr12	3948718	rs3809251	G	A	12204.77	.	AC=2;AF=1.00;AN=2;DB;DP=462;set=Intersection	GT:AD:AF:DP	1/1:0,458:1.00:458
chr12	3950977	rs7295047	T	C	4128.77	.	AC=1;AF=0.500;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	0/1:241,193:0.44:434
chr12	3951721	rs202084919	G	C	3446.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:143,170:0.54:313
chr12	3982657	rs4766179	A	G	4714.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr12	4388084	rs3217805	C	G	4674.77	.	AC=1;AF=0.500;AN=2;DB;DP=548;set=Intersection	GT:AD:AF:DP	0/1:299,240:0.45:539
chr12	4430547	rs10774222	C	T	10382.77	.	AC=2;AF=1.00;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	1/1:0,390:1.00:390
chr12	4430561	rs11063080	C	G	3451.77	.	AC=1;AF=0.500;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:156,162:0.51:318
chr12	4446116	rs7296163	T	C	2093.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr12	4461485	rs7133330	G	A	8588.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr12	4461700	.	C	A	4524.77	.	AC=1;AF=0.500;AN=2;DP=507;set=Intersection	GT:AD:AF:DP	0/1:283,218:0.44:501
chr12	4479549	rs7955866	G	A	7219.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr12	4537658	rs2970806	G	A	3278.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr12	4554548	rs7358740	G	C	42399.77	.	AC=2;AF=1.00;AN=2;DB;DP=1601;set=Intersection	GT:AD:AF:DP	1/1:0,1586:1.00:1586
chr12	4662210	rs17850028	T	C	571.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:20,27:0.57:47
chr12	4671429	rs34206253	G	T	17021.77	.	AC=2;AF=1.00;AN=2;DB;DP=640;set=Intersection	GT:AD:AF:DP	1/1:0,634:1.00:634
chr12	4671490	rs740059	G	A	14910.77	.	AC=2;AF=1.00;AN=2;DB;DP=567;set=Intersection	GT:AD:AF:DP	1/1:0,566:1.00:566
chr12	4677255	rs2240766	T	C	3016.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:97,126:0.57:223
chr12	4682418	rs3815360	T	G	740.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:27,30:0.53:57
chr12	4697987	rs2041295	A	T	1006.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.907;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=4.279;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.49;ReadPosRankSum=-1.209;SOR=1.347;set=HC	GT:AD:AF:DP	0/1:39,26:0.40:65
chr12	4697991	rs2041294	AT	GG	997.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.145;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=3.953;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.05;ReadPosRankSum=-0.838;SOR=1.292;set=HC	GT:AD:AF:DP	0/1:43,28:0.39:71
chr12	4700221	rs2302248	G	T	1877.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:83,87:0.51:170
chr12	4705317	rs3741925	C	T	1533.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:77,71:0.48:148
chr12	4708150	rs3741926	T	A	1525.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:41,63:0.61:104
chr12	4708438	rs202029653	T	TTTG	804.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.119;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=7.005;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.87;ReadPosRankSum=-2.733;SOR=1.617;set=HC	GT:AD:AF:DP	0/1:36,38:0.51:74
chr12	4714008	rs2286576	T	G	2204.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:81,94:0.54:175
chr12	4725134	rs7301885	G	A	5227.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr12	4735737	rs2072358	A	G	3130.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:145,146:0.50:291
chr12	4736495	rs1990312	C	T	7450.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr12	4736631	rs11063265	A	G	14179.77	.	AC=2;AF=1.00;AN=2;DB;DP=532;set=Intersection	GT:AD:AF:DP	1/1:0,525:1.00:525
chr12	4736677	rs11063266	G	C	17234.77	.	AC=2;AF=1.00;AN=2;DB;DP=628;set=Intersection	GT:AD:AF:DP	1/1:0,618:1.00:618
chr12	4736690	rs10774251	A	G	18298.77	.	AC=2;AF=1.00;AN=2;DB;DP=653;set=Intersection	GT:AD:AF:DP	1/1:0,644:1.00:644
chr12	4737042	rs7972737	G	A	7231.77	.	AC=1;AF=0.500;AN=2;DB;DP=591;set=Intersection	GT:AD:AF:DP	0/1:251,328:0.57:579
chr12	4737318	rs7960207	A	G	11793.77	.	AC=2;AF=1.00;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	1/1:0,449:1.00:449
chr12	4737459	rs2072356	C	T	9046.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:3,322:0.99:325
chr12	4737715	rs2072355	C	T	11196.77	.	AC=2;AF=1.00;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	1/1:0,399:1.00:399
chr12	4758188	rs714621	G	C	8715.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr12	4762871	rs200108366	CT	C	39.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.867;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=1.872;QD=0.88;ReadPosRankSum=-1.179;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:33,12:0.27:45
chr12	4763780	rs3217056	GCA	G	3672.73	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr12	4768354	rs7972657	A	C	3051.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr12	4768437	rs7958182	C	T	1690.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr12	4771682	rs2267549	G	A	4380.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:2,160:0.99:162
chr12	4779087	rs1009633	A	G	570.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr12	4779128	rs78705685	C	T	173.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:4,7:0.64:11
chr12	4794351	rs2240760	A	G	1146.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:87,60:0.41:147
chr12	4830000	rs10849133	T	G	1129.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.271;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=1.372;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.43;ReadPosRankSum=-0.692;SOR=0.567;set=HC	GT:AD:AF:DP	0/1:74,60:0.45:134
chr12	4835882	rs2286578	T	G	9795.77	.	AC=2;AF=1.00;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	1/1:0,359:1.00:359
chr12	4853806	rs34776842	A	G	2599.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:110,125:0.53:235
chr12	4853915	rs12312983	T	G	3123.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr12	4870363	rs2191157	G	A	7083.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr12	4873163	rs1468556	G	T	9019.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:2,345:0.99:347
chr12	4874518	rs145166695	CTT	C	412.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.308;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.20;ReadPosRankSum=0.712;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:4,20:0.83:24
chr12	4881766	rs2286581	C	T	2957.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.25;SOR=1.712;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr12	4881775	rs2286582	T	C	2777.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.54;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr12	4959874	rs10774275	T	C	8659.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:0,326:1.00:326
chr12	4959904	rs34855288	G	GA	10583.73	.	AC=2;AF=1.00;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	1/1:0,399:1.00:399
chr12	4959987	rs10774276	C	T	20350.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.707;ClippingRankSum=0.000;DB;DP=468;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.23;MQRankSum=0.163;QD=43.77;ReadPosRankSum=-0.891;SOR=0.434;set=HC	GT:AD:AF:DP	1/1:1,464:1.00:465
chr12	4959993	rs3168377	C	A	20176.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.696;ClippingRankSum=0.000;DB;DP=458;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.24;MQRankSum=0.223;QD=44.34;ReadPosRankSum=0.224;SOR=0.849;set=HC	GT:AD:AF:DP	1/1:2,453:1.00:455
chr12	4960023	rs14054	C	A	9517.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:2,351:0.99:353
chr12	4960089	rs700480	T	C	3984.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:1,131:0.99:132
chr12	4960117	rs12336	T	C	2382.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:1,88:0.99:89
chr12	5021228	rs1048500	T	C	8285.77	.	AC=1;AF=0.500;AN=2;DB;DP=754;set=Intersection	GT:AD:AF:DP	0/1:367,377:0.51:744
chr12	5021348	rs2227910	G	C	5705.77	.	AC=1;AF=0.500;AN=2;DB;DP=479;set=Intersection	GT:AD:AF:DP	0/1:222,252:0.53:474
chr12	5021984	rs4766309	T	A	5775.77	.	AC=1;AF=0.500;AN=2;DB;DP=632;set=Intersection	GT:AD:AF:DP	0/1:347,281:0.45:628
chr12	5022041	rs4766310	G	A	5194.77	.	AC=1;AF=0.500;AN=2;DB;DP=596;set=Intersection	GT:AD:AF:DP	0/1:329,262:0.44:591
chr12	5154462	rs2359641	T	C	15275.77	.	AC=2;AF=1.00;AN=2;DB;DP=589;set=Intersection	GT:AD:AF:DP	1/1:0,574:1.00:574
chr12	5603632	rs6332	G	A	10270.77	.	AC=1;AF=0.500;AN=2;DB;DP=1079;set=Intersection	GT:AD:AF:DP	0/1:571,496:0.46:1067
chr12	5603935	rs10849277	C	T	3283.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:152,149:0.50:301
chr12	5674754	rs2277398	G	A	5468.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr12	5721962	rs3741837	A	G	4589.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr12	5756795	rs444834	T	G	3389.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr12	5756824	rs367978	C	T	5504.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr12	5756980	rs12825437	G	A	2197.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:101,105:0.51:206
chr12	5757029	rs367206	C	T	2837.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr12	5848963	rs57224730	ACT	A	4794.73	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:137,127:0.48:264
chr12	5848977	rs79853037	C	T	3673.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:150,163:0.52:313
chr12	5849004	rs79278925	C	A	4643.77	.	AC=1;AF=0.500;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	0/1:234,219:0.48:453
chr12	5916350	rs2277403	G	A	1493.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:46,64:0.58:110
chr12	5936762	rs66831021	C	A	1821.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:73,82:0.53:155
chr12	5961048	rs7485945	G	A	8966.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:0,333:1.00:333
chr12	6030154	rs3825331	G	A	3283.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:105,88:0.46:193
chr12	6030165	rs3825332	G	A	3449.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.807;ClippingRankSum=0.000;DB;DP=232;ExcessHet=3.0103;FS=1.085;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.54;ReadPosRankSum=0.748;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:125,97:0.44:222
chr12	6030302	rs3741902	T	C	4574.77	.	AC=1;AF=0.500;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	0/1:205,204:0.50:409
chr12	6030405	rs3741903	A	G	4884.77	.	AC=1;AF=0.500;AN=2;DB;DP=543;set=Intersection	GT:AD:AF:DP	0/1:294,241:0.45:535
chr12	6032129	rs12817045	A	G	398.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.675;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=16.163;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.29;ReadPosRankSum=0.217;SOR=4.332;set=HC	GT:AD:AF:DP	0/1:18,12:0.40:30
chr12	6032138	rs12817050	A	G	371.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.655;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=15.841;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.77;ReadPosRankSum=-0.136;SOR=4.174;set=HC	GT:AD:AF:DP	0/1:17,10:0.37:27
chr12	6054277	rs6416321	G	A	5902.77	.	AC=1;AF=0.500;AN=2;DB;DP=643;set=Intersection	GT:AD:AF:DP	0/1:337,296:0.47:633
chr12	6054395	rs6489680	A	G	12575.77	.	AC=2;AF=1.00;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	1/1:0,470:1.00:470
chr12	6055132	rs6489682	T	G	7612.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr12	6062853	rs3759320	C	T	2540.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:157,128:0.45:285
chr12	6062878	rs3759321	G	A	1889.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:101,87:0.46:188
chr12	6062889	rs12297442	A	G	1714.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:79,82:0.51:161
chr12	6078616	rs2270239	T	G	5032.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr12	6085445	rs3819540	G	A	4632.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.474;ClippingRankSum=0.000;DB;DP=277;ExcessHet=3.0103;FS=1.465;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.91;ReadPosRankSum=-3.359;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:149,125:0.46:274
chr12	6085445	.	GTG	ATA	2798	.	AC=1;AF=0.500;AN=2;BRF=0.43;FR=0.5000;HP=1;HapScore=1;MGOF=11;MMLQ=23;MQ=60.0;NF=30;NR=49;PP=2798;QD=20;SC=ATAAGTTTTCGTGAGTGAACT;SbPval=0.64;Source=Platypus;TC=194;TCF=78;TCR=116;TR=79;WE=6085455;WS=6085435;set=Platypus	GT:AD:AF:DP	1/0:115,79:0.41:194
chr12	6085447	rs3819539	G	A	4632.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.199;ClippingRankSum=0.000;DB;DP=271;ExcessHet=3.0103;FS=2.065;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.29;ReadPosRankSum=-2.676;SOR=0.825;set=HC	GT:AD:AF:DP	0/1:149,119:0.44:268
chr12	6085513	rs216855	A	G	3493.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr12	6090892	rs2286937	G	A	1141.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:64,54:0.46:118
chr12	6091000	rs216867	A	G	10580.77	.	AC=2;AF=1.00;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	1/1:1,405:1.00:406
chr12	6092562	rs2192205	G	A	846.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:32,35:0.52:67
chr12	6092567	rs138350612	G	GGATAGATA,GGATAGATAGATAGATA	1032.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=62;MQ=60.17;set=Intersection	GT:AF:DP	1/2:0.36,0.64:22
chr12	6092629	rs10535241	TGATA	T	150.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=16.75;ReadPosRankSum=-2.515;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:3,6:0.67:9
chr12	6094152	rs2070885	G	A	796.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:54,40:0.43:94
chr12	6094390	rs2070884	C	T	729.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:81,38:0.32:119
chr12	6094495	rs2070883	C	G	356.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:14,14:0.50:28
chr12	6094845	rs177702	G	A	3609.77	.	AC=1;AF=0.500;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	0/1:196,172:0.47:368
chr12	6094937	rs11063974	C	G	1594.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:52,67:0.56:119
chr12	6102907	rs10849376	G	A	364.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:13,15:0.54:28
chr12	6105143	rs3741906	C	T	369.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:17,15:0.47:32
chr12	6105387	rs216902	G	A	1320.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:56,64:0.53:120
chr12	6121078	rs216305	C	T	1319.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:66,57:0.46:123
chr12	6127943	rs216310	A	G	1505.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:179,82:0.31:261
chr12	6128170	rs1800383	C	G	4920.77	.	AC=1;AF=0.500;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	0/1:223,223:0.50:446
chr12	6128443	rs216311	T	C	3706.77	.	AC=1;AF=0.500;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	0/1:201,179:0.47:380
chr12	6128984	rs216312	T	C	331.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:13,17:0.57:30
chr12	6138385	rs12307335	T	C	1343.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:70,62:0.47:132
chr12	6138702	rs60831677	G	A	1135.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:44,51:0.54:95
chr12	6143984	rs216321	T	C	12568.77	.	AC=2;AF=1.00;AN=2;DB;DP=489;set=Intersection	GT:AD:AF:DP	1/1:0,482:1.00:482
chr12	6144164	rs499648	T	C	3391.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.40;SOR=3.042;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr12	6144169	rs669667	T	G	3092.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.16;SOR=3.360;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr12	6145529	rs216325	G	A	3257.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr12	6153659	rs216293	G	T	6129.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:1,227:1.00:228
chr12	6153750	rs216294	A	G	1648.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr12	6161963	rs10622633	G	GAGA	7829.73	.	AC=2;AF=1.00;AN=2;DB;DP=193;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.39;QD=44.24;SOR=1.334;set=HC	GT:AD:AF:DP	1/1:0,177:1.00:177
chr12	6172202	rs1800378	T	C	3768.77	.	AC=1;AF=0.500;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	0/1:211,190:0.47:401
chr12	6204902	rs5796209	CA	C	1733.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr12	6230288	rs6489694	A	G	4790.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr12	6232426	rs2286608	G	A	7099.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr12	6344600	rs2072372	C	A	12790.77	.	AC=2;AF=1.00;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	1/1:0,468:1.00:468
chr12	6345199	rs3181300	C	T	580.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr12	6352292	rs9668222	T	A	4453.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr12	6421495	rs740842	G	A	2247.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:101,114:0.53:215
chr12	6422272	rs10849440	T	C	6315.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr12	6424577	rs1003563	A	G	1220.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:73,58:0.44:131
chr12	6427052	rs1468603	C	T	10106.77	.	AC=2;AF=1.00;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	1/1:1,395:1.00:396
chr12	6428116	rs4764497	T	G	12587.77	.	AC=2;AF=1.00;AN=2;DB;DP=451;set=Intersection	GT:AD:AF:DP	1/1:2,443:1.00:445
chr12	6428621	rs12828469	A	T	3759.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.92;SOR=2.531;set=HC	GT:AD:AF:DP	1/1:0,130:1.00:130
chr12	6435474	rs141921783	AAAT	A	1815.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr12	6435571	rs10849441	A	G	8149.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.36;QD=46.04;SOR=1.231;set=HC	GT:AD:AF:DP	1/1:0,177:1.00:177
chr12	6435575	rs10849442	C	T	8249.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.34;QD=43.42;SOR=1.234;set=HC	GT:AD:AF:DP	1/1:0,190:1.00:190
chr12	6435753	rs2302350	G	A	2888.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr12	6437171	rs3067490	T	TGG	10099.73	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr12	6439255	rs10849443	A	G	5794.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr12	6440009	rs1800693	T	C	3307.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr12	6442346	rs1800692	A	G	10723.77	.	AC=2;AF=1.00;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	1/1:0,384:1.00:384
chr12	6450945	rs767455	T	C	8980.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:3,341:0.99:344
chr12	6457062	rs2228576	T	C	1152.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr12	6457865	rs72657548	T	A	1228.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:60,59:0.50:119
chr12	6458084	rs3764875	C	T	2460.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:98,115:0.54:213
chr12	6458274	rs3764874	G	C	1639.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:55,68:0.55:123
chr12	6459326	rs61918248	T	C	854.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.351;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.48;MQRankSum=1.170;QD=10.30;ReadPosRankSum=0.757;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:38,45:0.54:83
chr12	6463862	rs11614164	G	A	2486.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr12	6483463	rs3741914	T	C	1271.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:72,55:0.43:127
chr12	6484709	rs10849447	T	C	3083.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:124,148:0.54:272
chr12	6493901	rs2302256	G	A	1347.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:98,65:0.40:163
chr12	6495070	rs4020662	C	CAAA	725.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.690;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=1.456;MLEAC=1;MLEAF=0.500;MQ=56.73;MQRankSum=0.627;QD=12.96;ReadPosRankSum=1.291;SOR=0.402;set=HC	GT:AD:AF:DP	0/1:22,34:0.61:56
chr12	6495275	rs2364480	C	A	12615.77	.	AC=2;AF=1.00;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	1/1:0,459:1.00:459
chr12	6495635	rs5796232	C	CA	4760.73	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:1,129:0.99:130
chr12	6495770	rs202107932	TACAC	T	918.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=38.28;SOR=1.739;set=HC	GT:AD:AF:DP	1/1:1,23:0.96:24
chr12	6500105	rs12354	T	G	12249.77	.	AC=2;AF=1.00;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	1/1:0,444:1.00:444
chr12	6551618	rs5796236	CA	C	319.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.098;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=0.625;QD=10.66;ReadPosRankSum=-0.854;SOR=0.481;set=HC	GT:AD:AF:DP	1/1:4,26:0.87:30
chr12	6551899	rs2886090	C	T	702.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:36,31:0.46:67
chr12	6552154	rs3759341	A	G	194.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:4,12:0.75:16
chr12	6560473	rs2532502	A	G	8624.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:0,329:1.00:329
chr12	6562753	rs2532501	A	G	7392.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr12	6562810	rs2532500	A	G	4231.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr12	6565750	rs10774432	A	G	4336.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr12	6567541	.	T	TA	783.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.942;ClippingRankSum=0.000;DP=196;ExcessHet=3.0103;FS=1.470;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=0.000;QD=4.40;ReadPosRankSum=1.420;SOR=0.556;set=HC	GT:AD:AF:DP	0/1:98,80:0.45:178
chr12	6570163	rs2534710	C	T	8074.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr12	6572048	rs1045452	A	G	9551.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:0,358:1.00:358
chr12	6572191	rs12964	T	C	2180.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr12	6575191	rs2534718	A	T	8482.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:1,300:1.00:301
chr12	6579565	rs2534720	A	G	5002.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr12	6579757	rs2532489	T	C	12301.77	.	AC=2;AF=1.00;AN=2;DB;DP=480;set=Intersection	GT:AD:AF:DP	1/1:0,470:1.00:470
chr12	6579812	rs2072376	T	C	7444.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr12	6601743	rs1001127	A	C	3225.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr12	6604194	rs73042367	G	C	1231.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:53,54:0.50:107
chr12	6618871	rs7309414	C	T	14372.77	.	AC=2;AF=1.00;AN=2;DB;DP=547;set=Intersection	GT:AD:AF:DP	1/1:2,534:1.00:536
chr12	6619054	rs7298053	T	C	8108.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr12	6619284	rs714774	C	G	9163.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr12	6619402	rs714775	T	C	10173.77	.	AC=2;AF=1.00;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	1/1:1,367:1.00:368
chr12	6620226	rs73044244	C	T	2466.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:121,117:0.49:238
chr12	6620495	rs7358768	G	T	4105.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.850;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=5.286;MLEAC=2;MLEAF=1.000;MQ=60.07;MQRankSum=0.163;QD=27.01;ReadPosRankSum=-0.274;SOR=1.793;set=HC	GT:AD:AF:DP	1/1:1,151:0.99:152
chr12	6623389	rs4764605	T	C	5523.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:2,184:0.99:186
chr12	6626369	rs758739	G	C	1352.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr12	6631169	rs917634	C	A	9606.77	.	AC=2;AF=1.00;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	1/1:2,360:0.99:362
chr12	6631888	rs2072373	G	A	2671.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr12	6635567	rs7311174	A	T	21947.77	.	AC=2;AF=1.00;AN=2;DB;DP=884;set=Intersection	GT:AD:AF:DP	1/1:0,857:1.00:857
chr12	6637845	rs2072374	T	C	7527.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:2,277:0.99:279
chr12	6639088	rs1043262	A	G	11919.77	.	AC=2;AF=1.00;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	1/1:0,443:1.00:443
chr12	6639981	rs2240871	C	G	11893.77	.	AC=2;AF=1.00;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	1/1:0,425:1.00:425
chr12	6640267	rs10849485	G	A	1043.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:19,41:0.68:60
chr12	6640669	.	CT	C	47.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.808;ClippingRankSum=0.000;DP=68;ExcessHet=3.0103;FS=2.955;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.95;ReadPosRankSum=0.114;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:38,12:0.24:50
chr12	6640677	rs1127198	T	A	788.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:12,41:0.77:53
chr12	6643927	rs3741915	T	G	1391.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.637;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=6.426;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.19;ReadPosRankSum=-0.402;SOR=1.238;set=HC	GT:AD:AF:DP	0/1:101,69:0.41:170
chr12	6643991	rs1136666	C	G	2740.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:184,132:0.42:316
chr12	6644256	rs3741918	T	A	2867.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr12	6646320	rs1065691	T	C	12827.77	.	AC=2;AF=1.00;AN=2;DB;DP=508;set=Intersection	GT:AD:AF:DP	1/1:2,488:1.00:490
chr12	6647109	rs1803621	T	C	7126.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr12	6657538	rs2286724	T	G	1786.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:67,78:0.54:145
chr12	6659694	rs2286726	G	C	845.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:41,33:0.45:74
chr12	6660219	rs7312991	C	T	9129.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.273;ClippingRankSum=0.000;DB;DP=477;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.55;ReadPosRankSum=-1.448;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:227,240:0.51:467
chr12	6660225	rs7301426	T	C	4596.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.495;ClippingRankSum=0.000;DB;DP=462;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.15;ReadPosRankSum=-0.437;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:224,229:0.51:453
chr12	6671154	rs370604185	AT	A	47.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.342;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=13.116;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.567;QD=0.73;ReadPosRankSum=-0.088;SOR=2.978;set=HC	GT:AD:AF:DP	0/1:46,19:0.29:65
chr12	6709945	rs12816349	G	A	837.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:55,37:0.40:92
chr12	6711147	rs1639122	C	A	3343.77	.	AC=1;AF=0.500;AN=2;DB;DP=448;MQ=60.02;set=Intersection	GT:AD:AF:DP	0/1:215,172:0.44:387
chr12	6747578	rs1882553	G	C	13177.77	.	AC=2;AF=1.00;AN=2;DB;DP=492;set=Intersection	GT:AD:AF:DP	1/1:0,483:1.00:483
chr12	6749093	rs2365087	A	G	2297.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr12	6756240	rs3803130	A	G	1725.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr12	6762026	rs4764506	T	C	3577.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr12	6764831	rs4764616	G	A	2225.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr12	6777069	rs3835029	TTGC	T	4366.73	.	AC=1;AF=0.500;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	0/1:120,144:0.55:264
chr12	6804902	rs10849498	A	G	5414.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr12	6835068	rs7487866	A	G	5251.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:164,153:0.48:317
chr12	6835081	rs2365100	G	A	4689.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:146,122:0.46:268
chr12	6836852	rs7138427	A	G	5541.77	.	AC=1;AF=0.500;AN=2;DB;DP=596;set=Intersection	GT:AD:AF:DP	0/1:328,266:0.45:594
chr12	6836913	rs2178691	G	T	3990.77	.	AC=1;AF=0.500;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	0/1:198,189:0.49:387
chr12	6839453	rs871365	G	A	983.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:45,44:0.49:89
chr12	6840126	.	TTC	T	89.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.725;ClippingRankSum=0.000;DP=82;ExcessHet=3.0103;FS=3.415;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=0.000;QD=1.21;ReadPosRankSum=-2.030;SOR=0.243;set=HC	GT:AD:AF:DP	0/1:64,10:0.14:74
chr12	6840209	rs3168600	G	A	2176.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:141,107:0.43:248
chr12	6840371	rs11227	G	T	2732.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:165,134:0.45:299
chr12	6857898	rs35247189	C	A	649.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:30,30:0.50:60
chr12	6859308	rs2302370	T	C	12863.77	.	AC=1;AF=0.500;AN=2;DB;DP=1186;set=Intersection	GT:AD:AF:DP	0/1:574,591:0.51:1165
chr12	6859797	rs2302368	T	C	1550.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:58,58:0.50:116
chr12	6861043	rs2302367	T	C	7561.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr12	6879202	rs4764622	T	C	7554.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;MQ=59.98;set=Intersection	GT:AD:AF:DP	1/1:1,270:1.00:271
chr12	6879279	rs4764621	A	G	12104.77	.	AC=2;AF=1.00;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	1/1:0,453:1.00:453
chr12	6882120	rs3214312	AG	A	2521.73	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:71,89:0.56:160
chr12	6883670	rs2365094	G	C	1876.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:67,76:0.53:143
chr12	6887020	rs870849	T	C	4702.77	.	AC=1;AF=0.500;AN=2;DB;DP=493;set=Intersection	GT:AD:AF:DP	0/1:245,229:0.48:474
chr12	6909380	rs3216776	TG	T	11888.73	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr12	6909388	rs2365568	A	G	13372.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr12	6909442	rs2255301	T	C	7046.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;MQ=60.04;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr12	6924718	rs3782736	C	A	661.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:38,29:0.43:67
chr12	6925149	rs10744715	C	T	7958.77	.	AC=1;AF=0.500;AN=2;DB;DP=807;set=Intersection	GT:AD:AF:DP	0/1:418,382:0.48:800
chr12	6926363	rs1055141	T	C	2271.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:134,112:0.46:246
chr12	6927470	rs12226953	C	T	546.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:26,30:0.54:56
chr12	6928075	rs12821756	T	C	4279.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.803;ClippingRankSum=0.000;DB;DP=361;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.44;ReadPosRankSum=1.277;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:164,180:0.52:344
chr12	6928135	rs55764611	T	G	2875.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.86;SOR=4.294;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr12	6928136	rs2071077	A	G	1068.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.276;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=10.760;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.05;ReadPosRankSum=0.947;SOR=2.916;set=HC	GT:AD:AF:DP	0/1:32,39:0.55:71
chr12	6928586	rs7136817	CA	AG	5098.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr12	6933787	rs1051409	A	G	7111.77	.	AC=1;AF=0.500;AN=2;DB;DP=673;set=Intersection	GT:AD:AF:DP	0/1:341,320:0.48:661
chr12	6935631	rs2071081	A	C	1489.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:63,65:0.51:128
chr12	6935977	rs11612427	A	G	4927.77	.	AC=1;AF=0.500;AN=2;DB;DP=462;set=Intersection	GT:AD:AF:DP	0/1:231,220:0.49:451
chr12	6938023	rs57050687	C	CG	4979.73	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr12	6939850	rs10744716	A	G	3462.77	.	AC=1;AF=0.500;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	0/1:201,158:0.44:359
chr12	6940254	rs7305463	A	G	6528.77	.	AC=1;AF=0.500;AN=2;DB;DP=567;set=Intersection	GT:AD:AF:DP	0/1:280,277:0.50:557
chr12	6941021	rs1047771	G	A	3896.77	.	AC=1;AF=0.500;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	0/1:222,191:0.46:413
chr12	6942672	rs4963513	A	C	1259.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:66,60:0.48:126
chr12	6942823	rs4963512	A	G	5259.77	.	AC=1;AF=0.500;AN=2;DB;DP=551;set=Intersection	GT:AD:AF:DP	0/1:276,261:0.49:537
chr12	6946247	rs1129646	G	T	6927.77	.	AC=1;AF=0.500;AN=2;DB;DP=641;set=Intersection	GT:AD:AF:DP	0/1:303,333:0.52:636
chr12	6946545	rs4963510	C	A	1701.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:62,74:0.54:136
chr12	6948468	rs1129649	T	C	7713.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr12	6950403	rs28395781	G	A	1114.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:73,55:0.43:128
chr12	6954875	rs5443	C	T	5510.77	.	AC=1;AF=0.500;AN=2;DB;DP=652;set=Intersection	GT:AD:AF:DP	0/1:372,277:0.43:649
chr12	6955865	rs138991440	C	CCACA	2286.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.868;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=2.943;MLEAC=1;MLEAF=0.500;MQ=60.64;MQRankSum=4.203;QD=14.20;ReadPosRankSum=0.367;SOR=0.937;set=HC	GT:AD:AF:DP	0/1:98,63:0.39:161
chr12	6959095	rs367917525	AC	A	2183.73	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:41,77:0.65:118
chr12	6965194	rs2226955	A	G	3670.77	.	AC=1;AF=0.500;AN=2;DB;DP=439;set=Intersection	GT:AD:AF:DP	0/1:252,186:0.42:438
chr12	6965740	rs2238114	C	A	3043.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;MQ=60.04;set=Intersection	GT:AD:AF:DP	0/1:126,130:0.51:256
chr12	6965763	rs72181812	AAG	A	2705.73	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:81,82:0.50:163
chr12	6965805	rs66621175	T	C	2059.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:78,82:0.51:160
chr12	6969731	rs2071059	A	G	1449.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:72,61:0.46:133
chr12	6979010	rs2071069	G	A	11013.77	.	AC=1;AF=0.500;AN=2;DB;DP=1150;set=Intersection	GT:AD:AF:DP	0/1:609,537:0.47:1146
chr12	7014962	rs2071071	A	G	739.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.536;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=13.300;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.49;ReadPosRankSum=0.262;SOR=1.814;set=HC	GT:AD:AF:DP	0/1:72,42:0.37:114
chr12	7015748	.	A	C	4305.77	.	AC=1;AF=0.500;AN=2;DP=458;set=Intersection	GT:AD:AF:DP	0/1:251,204:0.45:455
chr12	7015915	rs1007924	A	G	787.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:40,34:0.46:74
chr12	7016449	rs3741921	C	T	751.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:46,37:0.45:83
chr12	7018949	rs2301137	C	T	681.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:44,33:0.43:77
chr12	7022085	rs1057077	T	A	6947.77	.	AC=1;AF=0.500;AN=2;DB;DP=653;set=Intersection	GT:AD:AF:DP	0/1:319,324:0.50:643
chr12	7023123	rs710415	A	G	3284.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:167,162:0.49:329
chr12	7026893	rs376463507	A	AG	1674.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr12	7044647	rs367827860	A	AG	3707.73	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr12	7045891	rs377147612	ACAGCAGCAGCAGCAG	A,ACAGCAGCAGCAGCAGCAGCAGCAGCAG	23792.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=962;set=Intersection	GT:AF:DP	1/2:0.55,0.45:651
chr12	7045936	.	G	GCAGCAGCAGCAT	2995	.	AC=1;AF=0.500;AN=2;BRF=0.48;FR=0.5000;HP=1;HapScore=1;MGOF=67;MMLQ=28;MQ=60.74;NF=73;NR=178;PP=2995;QD=20;SC=AGCAGCAGCAGCATCACGGAA;SbPval=0.91;Source=Platypus;TC=553;TCF=212;TCR=341;TR=251;WE=7045944;WS=7045926;set=Platypus	GT:AD:AF:DP	1/0:302,251:0.45:553
chr12	7047143	rs7969685	C	A	2347.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:86,106:0.55:192
chr12	7049999	rs2071076	C	T	1787.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:79,70:0.47:149
chr12	7052978	rs61917871	G	A	566.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:24,24:0.50:48
chr12	7053085	rs3087835	A	G	1320.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:49,47:0.49:96
chr12	7053149	rs1044189	A	C	3905.77	.	AC=1;AF=0.500;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	0/1:143,166:0.54:309
chr12	7053362	rs915997	A	G	12606.77	.	AC=2;AF=1.00;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	1/1:0,452:1.00:452
chr12	7054859	rs2019743	G	A	5719.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr12	7055860	rs2301262	T	C	5548.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr12	7065281	rs10744724	C	T	9856.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:0,362:1.00:362
chr12	7065406	rs7963446	G	A	11125.77	.	AC=2;AF=1.00;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	1/1:0,401:1.00:401
chr12	7065576	rs2110071	G	A	13292.77	.	AC=2;AF=1.00;AN=2;DB;DP=493;set=Intersection	GT:AD:AF:DP	1/1:0,489:1.00:489
chr12	7065635	rs2110072	T	C	14341.77	.	AC=2;AF=1.00;AN=2;DB;DP=534;set=Intersection	GT:AD:AF:DP	1/1:0,533:1.00:533
chr12	7069422	rs35119590	TG	T	554.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.064;ClippingRankSum=0.000;DB;DP=272;ExcessHet=3.0103;FS=8.707;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.41;ReadPosRankSum=0.665;SOR=0.286;set=HC	GT:AD:AF:DP	0/1:181,49:0.21:230
chr12	7069425	rs28579154	G	C	3400.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.129;ClippingRankSum=0.000;DB;DP=272;ExcessHet=3.0103;FS=0.594;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.72;ReadPosRankSum=0.057;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:72,159:0.69:231
chr12	7069426	.	G	C	520.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.396;ClippingRankSum=0.000;DP=278;ExcessHet=3.0103;FS=8.487;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.18;ReadPosRankSum=0.349;SOR=0.285;set=HC	GT:AD:AF:DP	0/1:193,46:0.19:239
chr12	7069620	rs759052	T	C	16112.77	.	AC=2;AF=1.00;AN=2;DB;DP=623;set=Intersection	GT:AD:AF:DP	1/1:0,611:1.00:611
chr12	7069654	rs759053	G	A	11438.77	.	AC=2;AF=1.00;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	1/1:0,406:1.00:406
chr12	7079062	.	C	CA	128.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.925;ClippingRankSum=0.000;DP=121;ExcessHet=3.0103;FS=3.272;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=2.366;QD=1.14;ReadPosRankSum=0.297;SOR=1.148;set=HC	GT:AD:AF:DP	0/1:87,26:0.23:113
chr12	7079215	rs7301709	T	G	9452.77	.	AC=2;AF=1.00;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	1/1:0,360:1.00:360
chr12	7080210	rs60117710	A	AG	6366.73	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:2,229:0.99:231
chr12	7080212	rs17857448	T	C	10390.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr12	7090659	rs60570787	A	AG	8066.73	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr12	7187784	.	G	GT	91.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.801;ClippingRankSum=0.000;DP=362;ExcessHet=3.0103;FS=2.740;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.27;ReadPosRankSum=-0.090;SOR=0.503;set=HC	GT:AD:AF:DP	0/1:285,52:0.15:337
chr12	7189642	.	AT	A	49.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.381;ClippingRankSum=0.000;DP=119;ExcessHet=3.0103;FS=2.482;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=2.612;QD=0.54;ReadPosRankSum=-0.852;SOR=0.334;set=HC	GT:AD:AF:DP	0/1:75,17:0.18:92
chr12	7241599	.	G	GT	67.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.447;ClippingRankSum=0.000;DP=282;ExcessHet=3.0103;FS=0.702;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.28;ReadPosRankSum=-0.512;SOR=0.783;set=HC	GT:AD:AF:DP	0/1:200,38:0.16:238
chr12	7242299	rs1801046	G	A	4994.77	.	AC=1;AF=0.500;AN=2;DB;DP=545;set=Intersection	GT:AD:AF:DP	0/1:301,238:0.44:539
chr12	7242950	rs4332595	A	G	332.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:10,13:0.57:23
chr12	7242953	rs4505141	A	G	200.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:12,9:0.43:21
chr12	7246581	.	TTG	T	145.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.296;ClippingRankSum=0.000;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.84;ReadPosRankSum=0.805;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:67,12:0.15:79
chr12	7248856	rs61917912	G	A	79.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:6,5:0.45:11
chr12	7249598	rs3742089	T	C	4917.77	.	AC=1;AF=0.500;AN=2;DB;DP=507;set=Intersection	GT:AD:AF:DP	0/1:261,241:0.48:502
chr12	7252597	rs61917913	G	A	3984.77	.	AC=1;AF=0.500;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	0/1:220,200:0.48:420
chr12	7254669	rs3742088	A	C	3221.77	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:186,157:0.46:343
chr12	7254787	rs1075425	C	T	688.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:24,28:0.54:52
chr12	7274573	rs2290240	A	T	600.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:41,29:0.41:70
chr12	7280185	rs61917920	T	C	299.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:14,13:0.48:27
chr12	7280880	rs7969705	C	G	7406.77	.	AC=1;AF=0.500;AN=2;DB;DP=718;set=Intersection	GT:AD:AF:DP	0/1:355,357:0.50:712
chr12	7281317	rs10963	C	T	1973.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:92,93:0.50:185
chr12	7284301	rs2167285	C	T	555.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:13,24:0.65:37
chr12	7284340	rs113297706	C	CGCCTCCTA	994.73	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:21,23:0.52:44
chr12	7284484	rs10772466	A	C	7914.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr12	7287914	rs2278822	C	T	5395.77	.	AC=1;AF=0.500;AN=2;DB;DP=537;set=Intersection	GT:AD:AF:DP	0/1:276,260:0.49:536
chr12	7287956	rs34933247	C	T	6899.77	.	AC=1;AF=0.500;AN=2;DB;DP=647;set=Intersection	GT:AD:AF:DP	0/1:313,331:0.51:644
chr12	7288686	rs61236883	C	A	844.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:23,34:0.60:57
chr12	7288734	rs2278823	G	A	1240.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:59,53:0.47:112
chr12	7290389	.	T	TGA	45.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.842;ClippingRankSum=-0.000;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=64.97;MQRankSum=-1.383;QD=4.57;ReadPosRankSum=2.189;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:6,4:0.40:10
chr12	7290391	rs28433214	T	A	589.73	.	AC=1;AF=0.500;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=65.02;QD=24.57;SOR=3.258;set=HC	GT:AD:AF:DP	0/1:5,19:0.79:24
chr12	7293796	rs2305341	C	G	11966.77	.	AC=2;AF=1.00;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	1/1:0,407:1.00:407
chr12	7294657	rs63110460	GT	G,GTT	1388.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.829;ClippingRankSum=0.000;DB;DP=298;ExcessHet=3.0103;FS=4.811;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=5.47;ReadPosRankSum=-0.265;SOR=0.755;set=HC	GT:AD:AF:DP	1/2:56,119,79:0.47,0.31:254
chr12	7295314	.	C	CT	47.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.219;ClippingRankSum=0.000;DP=22;ExcessHet=3.0103;FS=4.706;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.27;ReadPosRankSum=-0.178;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:12,9:0.43:21
chr12	7295928	rs113899462	G	A	1248.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:42,50:0.54:92
chr12	7309199	rs7296261	G	A	16555.77	.	AC=2;AF=1.00;AN=2;DB;DP=612;set=Intersection	GT:AD:AF:DP	1/1:0,600:1.00:600
chr12	7309471	rs1868799	C	A	8689.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.56;SOR=2.172;set=HC	GT:AD:AF:DP	1/1:0,195:1.00:195
chr12	7309471	.	CGG	AGC	2947	.	AC=2;AF=1.00;AN=2;BRF=0.43;FR=1.0000;HP=2;HapScore=1;MGOF=2;MMLQ=24;MQ=60.0;NF=26;NR=108;PP=2947;QD=20;SC=CCAGACGTCCCGGAGCCCCAA;SbPval=0.49;Source=Platypus;TC=141;TCF=27;TCR=114;TR=134;WE=7309481;WS=7309461;set=Platypus	GT:AD:AF:DP	1/1:7,134:0.95:141
chr12	7309473	rs1868800	G	C	8689.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.74;SOR=2.110;set=HC	GT:AD:AF:DP	1/1:0,190:1.00:190
chr12	7309613	rs11608952	C	T	261.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:10,11:0.52:21
chr12	7310774	rs80341359	G	C	5924.77	.	AC=1;AF=0.500;AN=2;DB;DP=515;set=Intersection	GT:AD:AF:DP	0/1:232,266:0.53:498
chr12	7351843	rs1839623	T	C	308.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr12	7355898	rs4883087	C	G	1360.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr12	7360143	rs3825405	C	A	1639.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr12	7362204	rs141721291	G	GCTGAGTCGGTGGAGTAATGTGCAGAGTTTGAT	5480.73	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr12	7459443	.	CAA	C,CA	361.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.646;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=13.91;ReadPosRankSum=-0.724;SOR=0.693;set=HC	GT:AD:AF:DP	1/2:2,12,12:0.46,0.46:26
chr12	7463241	rs7968241	A	T	4589.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr12	7463491	rs7962994	C	G	1376.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr12	7470534	rs7968312	A	T	994.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr12	7477298	rs10743732	G	A	1952.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:1,65:0.98:66
chr12	7519826	rs7974006	A	G	1556.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:68,75:0.52:143
chr12	7521563	.	TGA	T	1176	.	AC=1;AF=0.500;AN=2;BRF=0.33;FR=0.5000;HP=2;HapScore=3;MGOF=4;MMLQ=24;MQ=60.0;NF=1;NR=19;PP=1176;QD=59.0;SC=GCGACTGTCCTGAGAGAGAGA;SbPval=0.88;Source=Platypus;TC=47;TCF=5;TCR=42;TR=20;WE=7521583;WS=7521553;set=Platypus	GT:AD:AF:DP	0/1:27,20:0.43:47
chr12	7521572	.	GA	G	636.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.074;ClippingRankSum=0.000;DP=94;ExcessHet=3.0103;FS=2.821;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.92;ReadPosRankSum=-0.004;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:56,36:0.39:92
chr12	7521574	.	GA	G	586.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.077;ClippingRankSum=0.000;DP=92;ExcessHet=3.0103;FS=5.835;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.38;ReadPosRankSum=0.594;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:58,34:0.37:92
chr12	7525795	rs10845007	C	T	1107.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr12	7525865	rs11053518	G	C	3627.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:2,127:0.98:129
chr12	7551022	rs6488268	A	T	34340.77	.	AC=2;AF=1.00;AN=2;DB;DP=1297;set=Intersection	GT:AD:AF:DP	1/1:0,1280:1.00:1280
chr12	7551050	rs6488269	A	C	35826.77	.	AC=2;AF=1.00;AN=2;DB;DP=1321;set=Intersection	GT:AD:AF:DP	1/1:0,1308:1.00:1308
chr12	7585971	rs10845159	A	G	5260.77	.	AC=1;AF=0.500;AN=2;DB;DP=469;set=Intersection	GT:AD:AF:DP	0/1:208,253:0.55:461
chr12	7592035	rs10772330	G	T	5623.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:1,212:1.00:213
chr12	7592139	rs10772331	G	A	5278.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr12	7596855	rs7954905	T	C	6619.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr12	7638020	rs10743939	G	A	6600.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr12	7639315	rs147727599	G	A	12067.77	.	AC=1;AF=0.500;AN=2;DB;DP=1140;set=Intersection	GT:AD:AF:DP	0/1:536,582:0.52:1118
chr12	7649484	rs4883263	T	C	13380.77	.	AC=2;AF=1.00;AN=2;DB;DP=492;set=Intersection	GT:AD:AF:DP	1/1:0,484:1.00:484
chr12	7649653	rs4883264	T	C	14813.77	.	AC=2;AF=1.00;AN=2;DB;DP=542;set=Intersection	GT:AD:AF:DP	1/1:0,539:1.00:539
chr12	7655137	rs3210140	A	G	17972.77	.	AC=2;AF=1.00;AN=2;DB;DP=660;set=Intersection	GT:AD:AF:DP	1/1:0,653:1.00:653
chr12	7655278	rs11836971	T	A	13983.77	.	AC=2;AF=1.00;AN=2;DB;DP=523;set=Intersection	GT:AD:AF:DP	1/1:0,514:1.00:514
chr12	7803562	rs10431308	C	A	3918.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr12	7805236	rs2302515	C	G	9093.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:1,318:1.00:319
chr12	7805467	rs2080127	C	T	9755.77	.	AC=2;AF=1.00;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	1/1:1,362:1.00:363
chr12	7805511	rs5796282	T	TA	4435.73	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:3,121:0.98:124
chr12	7807138	rs10845624	G	A	5862.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr12	7818348	.	GACACAC	G,GACAC	2291.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.884;ClippingRankSum=0.000;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.13;MQRankSum=0.386;QD=26.34;ReadPosRankSum=-0.705;SOR=1.055;set=HC	GT:AD:AF:DP	1/2:4,33,50:0.38,0.57:87
chr12	7847940	rs6488591	C	T	444.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:13,19:0.59:32
chr12	7848202	rs17727707	G	C	3661.77	.	AC=1;AF=0.500;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	0/1:224,189:0.46:413
chr12	7864316	.	CTTTTTTTTTTTTT	C	2025.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.183;ClippingRankSum=0.000;DP=168;ExcessHet=3.0103;FS=44.846;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.645;QD=27.75;ReadPosRankSum=3.975;SOR=3.019;set=HC	GT:AD:AF:DP	0/1:20,53:0.73:73
chr12	7867847	rs2024320	G	C	3432.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:140,161:0.53:301
chr12	7868777	rs34619457	A	AT,ATT	2949.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=27.31;SOR=0.769;set=HC	GT:AD:AF:DP	1/2:0,45,63:0.42,0.58:108
chr12	7868865	rs34547953	C	CTT,CTTT	1094.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.69;QD=24.33;SOR=1.483;set=HC	GT:AD:AF:DP	1/2:3,20,22:0.44,0.49:45
chr12	7898824	rs7134479	A	G	585.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.498;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.49;ReadPosRankSum=3.477;SOR=0.861;set=HC	GT:AD:AF:DP	0/1:35,34:0.49:69
chr12	7899703	rs117041014	G	A	259.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:44,16:0.27:60
chr12	7945640	rs2889551	G	T	855.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:65,38:0.37:103
chr12	7945670	rs4354764	G	A	1448.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.882;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=11.264;MLEAC=1;MLEAF=0.500;MQ=45.12;MQRankSum=-5.754;QD=8.42;ReadPosRankSum=0.310;SOR=1.885;set=HC	GT:AD:AF:DP	0/1:110,62:0.36:172
chr12	7945757	rs4438116	C	T	6336.77	.	AC=1;AF=0.500;AN=2;DB;DP=681;set=Intersection	GT:AD:AF:DP	0/1:366,313:0.46:679
chr12	7945829	rs4242903	G	C	20019.77	.	AC=2;AF=1.00;AN=2;DB;DP=737;set=Intersection	GT:AD:AF:DP	1/1:0,736:1.00:736
chr12	7945871	rs11831829	C	T	4391.77	.	AC=1;AF=0.500;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	0/1:225,209:0.48:434
chr12	7945916	rs34261320	G	A	3214.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:101,94:0.48:195
chr12	7945927	rs58791167	A	G	2891.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:76,71:0.48:147
chr12	7947017	rs1860931	T	C	1719.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:86,76:0.47:162
chr12	7947304	rs4012939	T	C	4660.77	.	AC=1;AF=0.500;AN=2;DB;DP=537;set=Intersection	GT:AD:AF:DP	0/1:305,226:0.43:531
chr12	7966958	rs10845981	C	T	3341.77	.	AC=1;AF=0.500;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	0/1:310,171:0.36:481
chr12	7967135	rs11055945	T	A	1826.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:108,85:0.44:193
chr12	7970347	.	T	TATAGATAGATAGATAG	991.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.197;ClippingRankSum=0.000;DP=77;ExcessHet=3.0103;FS=11.862;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=2.602;QD=14.80;ReadPosRankSum=1.515;SOR=2.581;set=HC	GT:AD:AF:DP	0/1:43,24:0.36:67
chr12	7970721	rs10845990	T	G	1836.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr12	7980035	rs10846003	T	C	9058.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	1/1:0,341:1.00:341
chr12	7980306	rs56049529	T	TA	4017.73	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr12	7982753	rs202204123	CTT	C,CT	1032.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.736;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=2.223;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=15.65;ReadPosRankSum=-1.681;SOR=1.839;set=HC	GT:AD:AF:DP	1/2:7,32,27:0.48,0.41:66
chr12	7984447	rs10772787	G	A	5584.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr12	7985460	rs17728008	T	C	3011.77	.	AC=1;AF=0.500;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	0/1:195,150:0.43:345
chr12	8043688	rs7297809	G	C	2772.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr12	8088766	rs2541281	T	C	403.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr12	8090271	rs11056574	C	T	504.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr12	8090317	.	CAAA	C,CAA	410.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=17.86;SOR=0.784;set=HC	GT:AD:AF:DP	1/2:0,9,14:0.39,0.61:23
chr12	8090505	rs12321738	C	G	305.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr12	8090839	rs7309332	T	C	2517.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:1,81:0.99:82
chr12	8196445	rs2277414	T	G	2815.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:81,113:0.58:194
chr12	8203273	rs17801353	T	G	2873.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:122,132:0.52:254
chr12	8203400	rs61922169	G	C	622.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:20,26:0.57:46
chr12	8235172	rs66928724	GT	G	1667.73	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:19,100:0.84:119
chr12	8276432	rs7295783	C	T	5702.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr12	8278181	rs2024301	A	T	16940.77	.	AC=2;AF=1.00;AN=2;DB;DP=635;set=Intersection	GT:AD:AF:DP	1/1:1,631:1.00:632
chr12	8286762	rs7315526	G	C	6331.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr12	8287048	rs11043498	C	T	6984.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr12	8288098	rs10840746	T	C	1606.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr12	8288403	rs17728942	G	A	975.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:37,42:0.53:79
chr12	8289226	rs4322490	G	A	2250.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr12	8289300	rs4573763	T	C	6601.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr12	8374770	rs9668474	G	A	1888.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr12	8374781	rs71265055	C	CACG	3086.73	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr12	8509576	rs2859693	T	C	954.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.570;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=0.000;QD=9.09;ReadPosRankSum=-1.821;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:60,45:0.43:105
chr12	8509668	rs12578609	C	T	2926.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:163,146:0.47:309
chr12	8509793	rs12580094	T	G	1057.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:47,48:0.51:95
chr12	8543143	rs4403873	T	A	107.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.67;QD=35.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr12	8543152	rs149165389	C	A	107.28	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.67;QD=35.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr12	8543153	.	T	TG	98.25	.	AC=2;AF=1.00;ALERT;AN=2;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.67;QD=32.75;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr12	8543158	rs138583618	C	T	107.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.67;QD=35.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr12	8543323	rs9706467	A	C	101.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.89;QD=25.26;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr12	8543366	rs34978072	A	G	196.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.51;QD=39.38;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr12	8543389	rs9706468	A	G	196.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.51;QD=39.38;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr12	8543395	rs9705548	G	A	196.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.51;QD=39.38;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr12	8608482	.	G	GTTTT	45	.	AC=1;AF=0.500;AN=2;BRF=0.0;FR=0.5000;HP=12;HapScore=2;MGOF=30;MMLQ=28;MQ=60.0;NF=2;NR=0;PP=45;QD=31.0;SC=TTCCTCTTTTGTTTTTTTTAA;SbPval=1.0;Source=Platypus;TC=5;TCF=5;TCR=0;TR=2;WE=8608490;WS=8608475;set=Platypus	GT:AD:AF:DP	0/1:3,2:0.40:5
chr12	8608583	rs4528410	A	G	265.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:17,13:0.43:30
chr12	8612336	rs10770736	G	C	2096.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:127,109:0.46:236
chr12	8612481	rs12300621	A	G	379.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.564;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.56;ReadPosRankSum=1.858;SOR=1.096;set=HC	GT:AD:AF:DP	0/1:17,11:0.39:28
chr12	8617976	rs7302011	A	T	2946.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.04;SOR=5.010;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr12	8617982	rs7315873	G	A	2974.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.11;SOR=4.438;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr12	8757481	rs2028373	G	A	1394.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.427;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.61;ReadPosRankSum=-1.274;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:87,75:0.46:162
chr12	8757522	rs5796316	C	CA	805.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.336;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=4.836;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.21;ReadPosRankSum=-0.839;SOR=0.201;set=HC	GT:AD:AF:DP	0/1:15,51:0.77:66
chr12	8759445	rs2518144	C	T	1960.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:117,96:0.45:213
chr12	8765447	rs1345004	T	C	4684.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr12	8808006	rs11046589	T	C	3062.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:102,142:0.58:244
chr12	8808655	rs11359613	CT	C	176.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.070;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=7.147;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=0.798;QD=6.09;ReadPosRankSum=-3.061;SOR=2.324;set=HC	GT:AD:AF:DP	0/1:10,19:0.66:29
chr12	8813345	rs35362262	CT	C	82.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.288;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=1.238;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=1.393;QD=1.53;ReadPosRankSum=-0.771;SOR=0.954;set=HC	GT:AD:AF:DP	0/1:37,17:0.31:54
chr12	8850706	rs112263725	G	T	900.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:38,39:0.51:77
chr12	8926011	rs2969089	T	C	11944.77	.	AC=2;AF=1.00;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	1/1:0,450:1.00:450
chr12	8982250	.	CA	C	131.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.111;ClippingRankSum=0.000;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.266;QD=1.97;ReadPosRankSum=-0.990;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:41,26:0.39:67
chr12	8987417	rs17729632	A	G	1425.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:40,59:0.60:99
chr12	8988403	rs4883188	A	C	965.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr12	8988777	rs1894814	A	G	1063.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:40,40:0.50:80
chr12	8989077	.	CT	C	104.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.380;ClippingRankSum=0.000;DP=52;ExcessHet=3.0103;FS=9.037;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.74;ReadPosRankSum=-1.154;SOR=1.825;set=HC	GT:AD:AF:DP	0/1:13,15:0.54:28
chr12	8989916	rs11047510	A	G	965.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:32,44:0.58:76
chr12	8990813	rs10743504	A	G	848.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:35,33:0.49:68
chr12	8995694	rs7307991	A	G	3849.77	.	AC=1;AF=0.500;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	0/1:216,197:0.48:413
chr12	8995966	rs7136813	G	A	5617.77	.	AC=1;AF=0.500;AN=2;DB;DP=613;set=Intersection	GT:AD:AF:DP	0/1:331,278:0.46:609
chr12	8997841	rs7300139	G	T	2849.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:148,128:0.46:276
chr12	8998892	rs55906630	A	G	3060.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:85,122:0.59:207
chr12	9002932	rs6487407	A	G	450.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:23,24:0.51:47
chr12	9004512	rs1860927	G	A	4348.77	.	AC=1;AF=0.500;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	0/1:218,216:0.50:434
chr12	9004667	rs4882965	G	C	2936.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:121,127:0.51:248
chr12	9004892	rs1860926	C	A	8607.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr12	9007225	rs6144605	GAGTTCTTCTGAGCTTC	G	442.73	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:22,13:0.37:35
chr12	9007492	rs35075098	A	AT	64.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.406;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=2.031;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.16;ReadPosRankSum=2.169;SOR=1.214;set=HC	GT:AD:AF:DP	0/1:20,10:0.33:30
chr12	9008318	rs1468711	G	C	279.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:12,12:0.50:24
chr12	9009779	rs56179521	C	T	1340.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:44,60:0.58:104
chr12	9009999	rs3079157	T	TAA	2458.73	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:67,64:0.49:131
chr12	9010671	rs11612600	G	A	3129.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:115,138:0.55:253
chr12	9016318	rs73234371	T	C	883.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.335;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=1.995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.78;ReadPosRankSum=-0.680;SOR=0.483;set=HC	GT:AD:AF:DP	0/1:32,43:0.57:75
chr12	9016573	rs10219561	A	G	1908.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr12	9020328	rs7311897	T	C	804.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:27,32:0.54:59
chr12	9020489	rs7308811	A	G	4423.77	.	AC=1;AF=0.500;AN=2;DB;DP=548;set=Intersection	GT:AD:AF:DP	0/1:311,234:0.43:545
chr12	9020563	rs61749073	T	C	6793.77	.	AC=1;AF=0.500;AN=2;DB;DP=631;set=Intersection	GT:AD:AF:DP	0/1:305,315:0.51:620
chr12	9020680	rs16917857	G	A	2234.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:107,93:0.47:200
chr12	9020794	rs77655847	G	C	5788.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.253;ClippingRankSum=0.000;DB;DP=316;ExcessHet=3.0103;FS=11.958;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.79;ReadPosRankSum=0.795;SOR=1.240;set=HC	GT:AD:AF:DP	0/1:159,149:0.48:308
chr12	9020794	.	GTC	CTT	2944	.	AC=1;AF=0.500;AN=2;BRF=0.41;FR=0.5000;HP=2;HapScore=1;MGOF=12;MMLQ=27;MQ=60.0;NF=69;NR=33;PP=2944;QD=20;SC=TTCTTTCCAAGTCTGATTTGG;SbPval=0.81;Source=Platypus;TC=225;TCF=137;TCR=88;TR=102;WE=9020804;WS=9020784;set=Platypus	GT:AD:AF:DP	1/0:123,102:0.45:225
chr12	9020796	rs79655903	C	T	5788.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.136;ClippingRankSum=0.000;DB;DP=326;ExcessHet=3.0103;FS=11.611;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.26;ReadPosRankSum=0.750;SOR=1.197;set=HC	GT:AD:AF:DP	0/1:163,154:0.49:317
chr12	9020912	rs1476910	A	G	5292.77	.	AC=1;AF=0.500;AN=2;DB;DP=520;set=Intersection	GT:AD:AF:DP	0/1:266,248:0.48:514
chr12	9021021	rs73234380	T	C	1983.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:82,89:0.52:171
chr12	9021053	rs5796325	C	CGT,CGTGT	3221.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=139;set=Intersection	GT:AF:DP	1/2:0.51,0.37:117
chr12	9021256	rs12816475	C	T	1252.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:48,57:0.54:105
chr12	9021283	rs55776445	A	T	420.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:36,23:0.39:59
chr12	9021316	rs10664353	T	TAC	443.73	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:12,15:0.56:27
chr12	9068472	rs10771204	G	T	3479.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr12	9068813	rs7304121	C	T	2212.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.69;SOR=6.027;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr12	9068814	rs11431930	T	TG	499.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.818;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.09;ReadPosRankSum=3.646;SOR=1.387;set=HC	GT:AD:AF:DP	0/1:30,25:0.45:55
chr12	9070366	rs4883198	T	A	2852.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;MQ=59.35;set=Intersection	GT:AD:AF:DP	0/1:142,139:0.49:281
chr12	9074259	rs1805741	C	T	7060.77	.	AC=1;AF=0.500;AN=2;DB;DP=644;set=Intersection	GT:AD:AF:DP	0/1:306,326:0.52:632
chr12	9082855	rs1805778	A	G	2233.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr12	9083336	rs1805777	A	G	2387.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.83;QD=34.11;SOR=2.737;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr12	9085099	rs887783	G	A	4829.77	.	AC=1;AF=0.500;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	0/1:211,221:0.51:432
chr12	9086683	rs1805735	A	T	3347.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:162,144:0.47:306
chr12	9090668	rs3026261	C	T	8936.77	.	AC=1;AF=0.500;AN=2;DB;DP=818;set=Intersection	GT:AD:AF:DP	0/1:398,416:0.51:814
chr12	9095226	rs1805731	T	C	1862.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:75,82:0.52:157
chr12	9095268	rs1805730	A	T	772.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:31,31:0.50:62
chr12	9095905	rs113829875	T	TAC	2350.73	.	AC=1;AF=0.500;AN=2;DB;DP=164;MQ=59.94;set=Intersection	GT:AD:AF:DP	0/1:94,68:0.42:162
chr12	9097933	rs1805725	C	A	312.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:19,15:0.44:34
chr12	9098995	rs149871778	G	GAAC	5642.73	.	AC=1;AF=0.500;AN=2;DB;DP=364;MQ=60.03;set=Intersection	GT:AD:AF:DP	0/1:187,149:0.44:336
chr12	9099034	rs4140911	G	A	2353.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:91,102:0.53:193
chr12	9142385	rs76321618	A	G	4024.77	.	AC=1;AF=0.500;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	0/1:207,190:0.48:397
chr12	9205540	rs2216143	T	A	714.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr12	9220729	rs7955940	G	A	6955.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;MQ=60.04;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr12	9220823	.	G	GA	103.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.097;ClippingRankSum=0.000;DP=150;ExcessHet=3.0103;FS=1.891;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.897;QD=0.82;ReadPosRankSum=-0.021;SOR=0.990;set=HC	GT:AD:AF:DP	0/1:101,25:0.20:126
chr12	9222286	rs1805664	C	T	8902.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr12	9227058	rs1805660	T	A	1489.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr12	9230038	rs2377682	C	T	5228.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr12	9230131	rs1805653	G	A	3094.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr12	9230572	rs1805652	G	T	2106.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr12	9232268	rs669	T	C	3428.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr12	9242924	rs2193005	G	C	5028.77	.	AC=1;AF=0.500;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	0/1:203,238:0.54:441
chr12	9243017	rs55761427	G	A	4478.77	.	AC=1;AF=0.500;AN=2;DB;DP=487;set=Intersection	GT:AD:AF:DP	0/1:248,222:0.47:470
chr12	9246250	.	C	CA	231.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.586;ClippingRankSum=0.000;DP=204;ExcessHet=3.0103;FS=0.764;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.892;QD=1.38;ReadPosRankSum=0.615;SOR=0.564;set=HC	GT:AD:AF:DP	0/1:132,36:0.21:168
chr12	9248233	rs226405	T	C	8771.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	1/1:0,332:1.00:332
chr12	9248332	rs55933766	T	C	769.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.278;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=3.692;MLEAC=1;MLEAF=0.500;MQ=59.56;MQRankSum=0.260;QD=7.33;ReadPosRankSum=0.137;SOR=1.094;set=HC	GT:AD:AF:DP	0/1:62,43:0.41:105
chr12	9253894	rs226397	C	T	5030.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr12	9256708	rs226390	C	T	1064.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:42,41:0.49:83
chr12	9258821	rs12427063	A	G	3792.77	.	AC=1;AF=0.500;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	0/1:205,179:0.47:384
chr12	9260280	rs226388	T	C	1735.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:62,80:0.56:142
chr12	9262727	rs226386	T	G	687.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:26,27:0.51:53
chr12	9264946	rs226383	T	G	3493.77	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:194,169:0.47:363
chr12	9268473	rs226380	A	C	693.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:57,36:0.39:93
chr12	9268585	rs226379	T	C	130.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:13,7:0.35:20
chr12	9302313	rs2303615	A	G	622.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:17,24:0.59:41
chr12	9303296	rs10842971	A	T	6546.77	.	AC=1;AF=0.500;AN=2;DB;DP=679;set=Intersection	GT:AD:AF:DP	0/1:347,327:0.49:674
chr12	9305473	rs10771357	T	C	4365.77	.	AC=1;AF=0.500;AN=2;DB;DP=448;set=Intersection	GT:AD:AF:DP	0/1:229,212:0.48:441
chr12	9307373	rs2377741	T	G	6735.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr12	9309995	rs12822596	G	A	305.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:22,14:0.39:36
chr12	9310565	rs4882981	C	T	1375.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:64,66:0.51:130
chr12	9310576	rs10771364	T	G	3524.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr12	9310959	rs7298673	C	T	1380.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr12	9311251	rs7309811	C	G	682.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:37,30:0.45:67
chr12	9311265	rs3741850	A	C	2011.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr12	9311281	rs7309821	C	T	537.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:20,23:0.53:43
chr12	9313518	rs7972015	T	A	1793.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.825;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.18;MQRankSum=-0.899;QD=15.87;ReadPosRankSum=0.323;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:19,94:0.83:113
chr12	9315209	rs10771381	A	G	11815.77	.	AC=2;AF=1.00;AN=2;DB;DP=455;set=Intersection	GT:AD:AF:DP	1/1:2,444:1.00:446
chr12	9316773	rs3213831	T	C	11673.77	.	AC=2;AF=1.00;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	1/1:0,426:1.00:426
chr12	9316907	rs1863839	C	T	2182.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr12	9317885	rs2277412	G	A	8777.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chr12	9334728	rs3832849	G	GAGTGAGACAAAATGGTCATA	7521.73	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr12	9345273	rs10771407	A	G	11655.77	.	AC=2;AF=1.00;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	1/1:0,422:1.00:422
chr12	9352908	rs6487668	C	A	2845.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr12	9353828	rs3759275	A	T	340.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:23,15:0.39:38
chr12	9353875	rs3759274	T	C	257.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:30,15:0.33:45
chr12	9446417	.	GCAGGCACCC	G	4110.73	.	AC=2;AF=1.00;AN=2;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.03;QD=44.20;SOR=1.821;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr12	9446913	rs61916248	C	T	242.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.73;QD=26.98;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr12	9446932	rs61916249	G	C	247.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.57;QD=30.97;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr12	9446977	rs3874129	G	C	85.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.840;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=41.25;MQRankSum=-1.754;QD=8.58;ReadPosRankSum=0.514;SOR=1.911;set=HC	GT:AD:AF:DP	0/1:5,5:0.50:10
chr12	9447029	rs2432993	T	C	30.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=36.12;QD=15.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr12	9447347	.	C	T	68.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.376;ClippingRankSum=0.000;DP=51;ExcessHet=3.0103;FS=5.579;MLEAC=1;MLEAF=0.500;MQ=47.31;MQRankSum=-0.839;QD=1.38;ReadPosRankSum=-0.543;SOR=0.183;set=HC	GT:AD:AF:DP	0/1:40,10:0.20:50
chr12	9447484	rs77482466	C	T	2096.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.977;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=1.562;MLEAC=1;MLEAF=0.500;MQ=52.23;MQRankSum=-9.096;QD=19.78;ReadPosRankSum=-1.191;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:49,57:0.54:106
chr12	9447488	rs75114985	C	T	2012.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.231;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.66;MQRankSum=-8.846;QD=20.13;ReadPosRankSum=-1.967;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:46,54:0.54:100
chr12	9450357	rs375411540	A	G	959.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr12	9450594	rs61916255	C	T	1239.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.51;QD=41.33;SOR=4.548;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr12	9450603	rs142596611	T	C	1148.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.18;QD=45.95;SOR=6.518;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr12	9451370	rs200995345	T	C	1038.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.237;ClippingRankSum=0.000;DB;DP=317;ExcessHet=3.0103;FS=13.018;MLEAC=1;MLEAF=0.500;MQ=51.12;MQRankSum=-9.114;QD=3.29;ReadPosRankSum=1.661;SOR=0.303;set=HC	GT:AD:AF:DP	0/1:234,82:0.26:316
chr12	9451397	rs74390404	G	A	1009.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.459;ClippingRankSum=0.000;DB;DP=411;ExcessHet=3.0103;FS=5.230;MLEAC=1;MLEAF=0.500;MQ=52.98;MQRankSum=-10.771;QD=2.46;ReadPosRankSum=4.116;SOR=0.389;set=HC	GT:AD:AF:DP	0/1:318,93:0.23:411
chr12	9452062	rs75887043	A	C	155.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.15;QD=22.26;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr12	9453656	rs61917368	C	T	230.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.604;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=3.222;MLEAC=1;MLEAF=0.500;MQ=48.30;MQRankSum=1.735;QD=10.99;ReadPosRankSum=-1.366;SOR=0.160;set=HC	GT:AD:AF:DP	0/1:11,10:0.48:21
chr12	9453726	rs61917369	G	A	2172.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.018;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=5.697;MLEAC=1;MLEAF=0.500;MQ=46.05;MQRankSum=5.727;QD=28.22;ReadPosRankSum=-1.057;SOR=0.256;set=HC	GT:AD:AF:DP	0/1:25,52:0.68:77
chr12	9453743	rs28415351	C	A,G	3777.77	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=47.97;QD=32.57;SOR=2.033;set=HC	GT:AD:AF:DP	1/2:0,74,42:0.64,0.36:116
chr12	9453864	rs61917370	A	G	2684.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:151,137:0.48:288
chr12	9454868	rs200022321	C	T	1766.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.340;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=4.346;MLEAC=2;MLEAF=1.000;MQ=46.83;MQRankSum=-0.959;QD=25.98;ReadPosRankSum=1.313;SOR=1.208;set=HC	GT:AD:AF:DP	1/1:1,67:0.99:68
chr12	9455342	rs80134739	A	G	2421.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:177,120:0.40:297
chr12	9455428	rs11050141	A	G	2421.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr12	9456640	rs201046098	C	A	1211.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.79;QD=30.29;SOR=5.136;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr12	9456729	rs11050148	T	C	5800.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr12	9456838	rs10843357	G	A	8658.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,329:1.00:329
chr12	9458412	rs10743653	G	C	2161.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=5.617;MLEAC=2;MLEAF=1.000;MQ=45.01;MQRankSum=2.697;QD=31.79;ReadPosRankSum=1.619;SOR=3.545;set=HC	GT:AD:AF:DP	1/1:2,66:0.97:68
chr12	9458891	rs370295997	A	G	228.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.079;ClippingRankSum=0.000;DB;DP=457;ExcessHet=3.0103;FS=14.427;MLEAC=1;MLEAF=0.500;MQ=52.41;MQRankSum=-9.916;QD=0.50;ReadPosRankSum=-4.301;SOR=2.142;set=HC	GT:AD:AF:DP	0/1:400,54:0.12:454
chr12	9459854	rs9971685	G	C	3081.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.078;ClippingRankSum=0.000;DB;DP=388;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.24;MQRankSum=-9.537;QD=8.03;ReadPosRankSum=-4.123;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:232,152:0.40:384
chr12	9459898	rs2911825	G	T	1162.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:160,59:0.27:219
chr12	9462680	.	GTAA	G	2298.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.381;ClippingRankSum=0.000;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.69;MQRankSum=-5.713;QD=17.41;ReadPosRankSum=2.732;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:71,61:0.46:132
chr12	9462681	.	T	TGCC	2921	.	AC=1;AF=0.500;AN=2;BRF=0.27;FR=0.5000;HP=3;HapScore=1;MGOF=23;MMLQ=24;MQ=54.95;NF=12;NR=25;PP=2921;QD=20;SC=TTTCTGTGGGTAATACCTCAT;SbPval=0.33;Source=Platypus;TC=103;TCF=28;TCR=75;TR=37;WE=9462694;WS=9462671;set=Platypus	GT:AD:AF:DP	0/1:66,37:0.36:103
chr12	9462685	.	A	G	2394.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=5.300;ClippingRankSum=0.000;DP=129;ExcessHet=3.0103;FS=0.671;MLEAC=1;MLEAF=0.500;MQ=55.37;MQRankSum=-6.155;QD=18.71;ReadPosRankSum=3.000;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:67,61:0.48:128
chr12	9462686	.	C	CCGTTTT	2385.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.075;ClippingRankSum=0.000;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.44;MQRankSum=-6.360;QD=18.79;ReadPosRankSum=3.264;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:67,60:0.47:127
chr12	9462709	rs2889720	A	G	3817.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr12	9463010	rs4883234	C	G	20796.77	.	AC=2;AF=1.00;AN=2;DB;DP=782;set=Intersection	GT:AD:AF:DP	1/1:0,774:1.00:774
chr12	9463077	rs10771513	A	C	3372.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:145,158:0.52:303
chr12	9463105	rs11050177	A	G	2202.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:91,85:0.48:176
chr12	9463774	rs55809356	G	T	1922.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:136,106:0.44:242
chr12	9463806	rs10771515	T	C	4475.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr12	9464060	rs12822747	G	C	41.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.058;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.49;MQRankSum=-7.249;QD=0.54;ReadPosRankSum=0.406;SOR=0.305;set=HC	GT:AD:AF:DP	0/1:69,9:0.12:78
chr12	9464109	rs12824979	A	G	2323.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:176,99:0.36:275
chr12	9464126	rs201695391	A	G	3745.77	.	AC=1;AF=0.500;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	0/1:238,166:0.41:404
chr12	9464133	rs10843383	C	G	2399.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.733;ClippingRankSum=0.000;DB;DP=459;ExcessHet=3.0103;FS=0.638;MLEAC=1;MLEAF=0.500;MQ=56.75;MQRankSum=4.735;QD=5.27;ReadPosRankSum=0.801;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:327,128:0.28:455
chr12	9464178	rs112191067	G	A	3010.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.317;ClippingRankSum=0.000;DB;DP=885;ExcessHet=3.0103;FS=1.305;MLEAC=1;MLEAF=0.500;MQ=57.45;MQRankSum=-9.358;QD=3.42;ReadPosRankSum=0.168;SOR=0.544;set=HC	GT:AD:AF:DP	0/1:656,224:0.25:880
chr12	9464241	rs61917427	C	A	7123.77	.	AC=1;AF=0.500;AN=2;DB;DP=1257;set=Intersection	GT:AD:AF:DP	0/1:823,429:0.34:1252
chr12	9464253	rs182109965	G	A	764.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.425;ClippingRankSum=0.000;DB;DP=1279;ExcessHet=3.0103;FS=1.677;MLEAC=1;MLEAF=0.500;MQ=58.55;MQRankSum=-16.973;QD=0.60;ReadPosRankSum=2.940;SOR=0.872;set=HC	GT:AD:AF:DP	0/1:1100,176:0.14:1276
chr12	9464271	.	C	CGTT	8803.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.030;ClippingRankSum=0.000;DP=1190;ExcessHet=3.0103;FS=10.247;MLEAC=1;MLEAF=0.500;MQ=58.56;MQRankSum=-26.851;QD=7.74;ReadPosRankSum=-1.799;SOR=1.359;set=HC	GT:AD:AF:DP	0/1:861,276:0.24:1137
chr12	9464828	rs12581470	C	T	1515.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:139,81:0.37:220
chr12	9465424	rs200926727	A	AG	2490.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.785;ClippingRankSum=0.000;DB;DP=504;ExcessHet=3.0103;FS=2.041;MLEAC=1;MLEAF=0.500;MQ=57.70;MQRankSum=-19.250;QD=5.11;ReadPosRankSum=0.036;SOR=0.864;set=HC	GT:AD:AF:DP	0/1:362,125:0.26:487
chr12	9465872	rs4012572	G	A	103.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=25.76;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr12	9549634	rs11308534	AG	A	419.73	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:12,15:0.56:27
chr12	9554954	rs199562811	G	C	133.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.664;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.58;MQRankSum=-0.993;QD=4.78;ReadPosRankSum=1.172;SOR=0.869;set=HC	GT:AD:AF:DP	0/1:20,8:0.29:28
chr12	9555110	rs12821647	A	G	3402.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.10;QD=28.59;SOR=1.247;set=HC	GT:AD:AF:DP	1/1:0,119:1.00:119
chr12	9555185	rs72475431	A	G	2459.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:75,89:0.54:164
chr12	9570971	rs7487238	G	A	438.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr12	9571547	rs61916776	C	G	5399.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr12	9571599	rs73242993	C	A	4276.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr12	9571670	rs77617533	T	C	1454.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr12	9572244	rs7305608	A	G	3042.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr12	9572754	rs55665529	C	T	5419.77	.	AC=1;AF=0.500;AN=2;DB;DP=580;set=Intersection	GT:AD:AF:DP	0/1:318,262:0.45:580
chr12	9572788	rs145731114	C	CGCACCTGGAT	8456.73	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr12	9572819	rs10843740	C	T	1351.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.319;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=40.04;MQRankSum=-0.663;QD=13.94;ReadPosRankSum=0.342;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:42,55:0.57:97
chr12	9572871	rs10843741	T	C	1108.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.80;QD=30.80;SOR=1.547;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr12	9573130	rs7358608	C	T	685.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:56,33:0.37:89
chr12	9573224	rs7358609	C	T	5155.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:48,218:0.82:266
chr12	9573287	rs375873947	AAGGAAGGG	A	1238.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.554;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=2.129;MLEAC=1;MLEAF=0.500;MQ=62.55;MQRankSum=-7.047;QD=8.48;ReadPosRankSum=0.394;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:88,58:0.40:146
chr12	9573291	rs67766754	AAGGG	A	2542.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.785;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=0.601;MLEAC=1;MLEAF=0.500;MQ=62.58;MQRankSum=10.251;QD=16.62;ReadPosRankSum=3.596;SOR=0.596;set=HC	GT:AD:AF:DP	0/1:84,69:0.45:153
chr12	9573306	.	GGA	CCC	2934	.	AC=1;AF=0.500;AN=2;BRF=0.43;FR=0.5000;HP=2;HapScore=2;MGOF=35;MMLQ=27;MQ=61.57;NF=25;NR=32;PP=2934;QD=20;SC=AGGGAGGGAGGGAGCCCCCAT;SbPval=0.34;Source=Platypus;TC=121;TCF=47;TCR=74;TR=57;WE=9573317;WS=9573273;set=Platypus	GT:AD:AF:DP	1/0:64,57:0.47:121
chr12	9573308	.	AG	A	2971	.	AC=1;AF=0.500;AN=2;BRF=0.43;FR=0.5000;HP=4;HapScore=2;MGOF=35;MMLQ=27;MQ=60.48;NF=12;NR=65;PP=2971;QD=20;SC=GGAGGGAGGGAGCCCCCATGG;SbPval=0.46;Source=Platypus;TC=89;TCF=13;TCR=76;TR=77;WE=9573317;WS=9573273;set=Platypus	GT:AD:AF:DP	1/0:12,77:0.87:89
chr12	9573309	.	G	GCCC	2648.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.309;ClippingRankSum=0.000;DP=143;ExcessHet=3.0103;FS=3.170;MLEAC=1;MLEAF=0.500;MQ=63.09;MQRankSum=9.208;QD=20.37;ReadPosRankSum=1.127;SOR=0.460;set=HC	GT:AD:AF:DP	0/1:61,69:0.53:130
chr12	9573338	rs4763950	G	A	4006.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr12	9574002	rs10771709	C	T	20553.77	.	AC=2;AF=1.00;AN=2;DB;DP=772;set=Intersection	GT:AD:AF:DP	1/1:0,767:1.00:767
chr12	9574042	rs7298124	C	A	10264.77	.	AC=1;AF=0.500;AN=2;DB;DP=1048;set=Intersection	GT:AD:AF:DP	0/1:543,502:0.48:1045
chr12	9574119	rs4764050	A	G	21041.77	.	AC=2;AF=1.00;AN=2;DB;DP=767;set=Intersection	GT:AD:AF:DP	1/1:0,766:1.00:766
chr12	9574344	rs4237949	T	G	1929.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr12	9574480	rs7132464	T	C	2813.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.58;QD=29.62;SOR=1.109;set=HC	GT:AD:AF:DP	1/1:0,95:1.00:95
chr12	9577013	rs61914669	C	A	389.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:25,18:0.42:43
chr12	9577027	rs3825308	C	G	716.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:22,29:0.57:51
chr12	9577310	rs7296629	A	C	8813.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:1,318:1.00:319
chr12	9577992	rs201150453	C	T	807.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.291;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=3.648;MLEAC=1;MLEAF=0.500;MQ=45.94;MQRankSum=-1.905;QD=7.62;ReadPosRankSum=-1.862;SOR=1.657;set=HC	GT:AD:AF:DP	0/1:72,34:0.32:106
chr12	9578036	rs147150188	A	G	2468.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:176,114:0.39:290
chr12	9578197	rs76671194	A	T	8535.77	.	AC=1;AF=0.500;AN=2;DB;DP=935;set=Intersection	GT:AD:AF:DP	0/1:505,423:0.46:928
chr12	9580203	rs58705479	G	C	22146.77	.	AC=2;AF=1.00;AN=2;DB;DP=842;set=Intersection	GT:AD:AF:DP	1/1:2,827:1.00:829
chr12	9580293	rs200454162	A	G	981.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.120;ClippingRankSum=0.000;DB;DP=674;ExcessHet=3.0103;FS=27.686;MLEAC=1;MLEAF=0.500;MQ=57.72;MQRankSum=-17.909;QD=1.47;ReadPosRankSum=-3.085;SOR=3.418;set=HC	GT:AD:AF:DP	0/1:596,74:0.11:670
chr12	9580303	rs201526991	A	G	780.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=12.514;ClippingRankSum=0.000;DB;DP=603;ExcessHet=3.0103;FS=41.137;MLEAC=1;MLEAF=0.500;MQ=57.37;MQRankSum=-16.884;QD=1.31;ReadPosRankSum=-2.422;SOR=6.268;set=HC	GT:AD:AF:DP	0/1:538,60:0.10:598
chr12	9580395	rs61914681	C	G	4962.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.27;QD=42.06;SOR=5.892;set=HC	GT:AD:AF:DP	1/1:0,118:1.00:118
chr12	9581798	rs11050925	C	T	2006.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:84,90:0.52:174
chr12	9582052	.	G	A	1578.77	.	AC=1;AF=0.500;AN=2;DP=300;set=Intersection	GT:AD:AF:DP	0/1:205,95:0.32:300
chr12	9582244	rs201653123	G	A	924.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.129;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=43.23;MQRankSum=2.138;QD=24.34;ReadPosRankSum=3.217;SOR=0.523;set=HC	GT:AD:AF:DP	0/1:6,32:0.84:38
chr12	9583216	rs3864916	T	C	2161.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.38;QD=43.24;SOR=2.124;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr12	9583221	rs3864915	G	A	2219.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.41;QD=42.69;SOR=2.049;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr12	9583324	rs4012577	G	A	635.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.432;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.20;MQRankSum=1.751;QD=20.51;ReadPosRankSum=-1.086;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:4,27:0.87:31
chr12	9584916	rs3882934	C	T	449.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.53;QD=23.67;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr12	9584991	rs2553132	C	T	218.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.70;QD=24.31;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr12	9585573	rs71447582	C	T	677.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.510;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=1.643;MLEAC=1;MLEAF=0.500;MQ=47.88;MQRankSum=-1.750;QD=5.89;ReadPosRankSum=2.889;SOR=0.891;set=HC	GT:AD:AF:DP	0/1:77,38:0.33:115
chr12	9585598	rs200479049	T	C	1081.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.40;QD=27.74;SOR=5.943;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr12	9585631	rs75182719	C	T	210.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.070;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=38.97;MQRankSum=-0.692;QD=7.81;ReadPosRankSum=-0.703;SOR=0.317;set=HC	GT:AD:AF:DP	0/1:17,10:0.37:27
chr12	9585658	rs200040906	A	G	76.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.965;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=38.82;MQRankSum=0.875;QD=6.98;ReadPosRankSum=-0.908;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:7,4:0.36:11
chr12	9586591	rs61914695	G	C	2153.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.372;ClippingRankSum=0.000;DB;DP=437;ExcessHet=3.0103;FS=0.582;MLEAC=1;MLEAF=0.500;MQ=57.36;MQRankSum=0.563;QD=4.97;ReadPosRankSum=-1.489;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:305,128:0.30:433
chr12	9589580	rs12425701	C	T	1363.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr12	9589681	rs77571608	C	G	1021.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr12	9589717	.	G	T	596.77	.	AC=2;AF=1.00;AN=2;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.49;QD=27.13;SOR=1.931;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr12	9589821	.	A	G	30.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DP=3;ExcessHet=3.0103;FS=4.771;MLEAC=1;MLEAF=0.500;MQ=39.67;MQRankSum=0.967;QD=10.26;ReadPosRankSum=-0.431;SOR=2.225;set=HC	GT:AD:AF:DP	0/1:1,2:0.67:3
chr12	9590136	.	C	G	782.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.140;ClippingRankSum=0.000;DP=475;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.51;MQRankSum=-9.289;QD=1.65;ReadPosRankSum=-0.132;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:386,89:0.19:475
chr12	9590164	.	T	C	1027.77	.	AC=1;AF=0.500;AN=2;DP=335;set=Intersection	GT:AD:AF:DP	0/1:259,76:0.23:335
chr12	9590197	rs61914700	T	C	6179.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr12	9590500	rs200363665	G	GC	688.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.342;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=1.487;MLEAC=1;MLEAF=0.500;MQ=45.47;MQRankSum=-0.252;QD=9.06;ReadPosRankSum=-2.094;SOR=1.193;set=HC	GT:AD:AF:DP	0/1:50,26:0.34:76
chr12	9590505	rs201948852	G	A	2294.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.003;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=7.482;MLEAC=1;MLEAF=0.500;MQ=45.85;MQRankSum=-3.223;QD=23.42;ReadPosRankSum=-0.724;SOR=0.136;set=HC	GT:AD:AF:DP	0/1:22,76:0.78:98
chr12	9633258	rs4015230	A	G	3256.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr12	9633375	rs4015231	A	G	912.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr12	9664292	rs10843926	G	A	1259.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.10;QD=27.99;SOR=1.414;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr12	9688883	rs2536903	A	C	2376.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr12	9692918	rs199651672	G	T	181.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=30.31;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr12	9693196	rs138943288	G	A	260.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.47;QD=28.98;SOR=4.615;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr12	9697765	rs145716121	T	C	32.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.792;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.42;MQRankSum=-2.189;QD=4.68;ReadPosRankSum=-1.006;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr12	9706558	rs201297932	CT	C	100.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.780;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.06;MQRankSum=-3.754;QD=0.57;ReadPosRankSum=0.969;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:142,36:0.20:178
chr12	9707098	rs7309655	C	T	1517.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.31;QD=29.76;SOR=2.170;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr12	9711954	rs2536846	A	T	964.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.12;QD=30.15;SOR=3.545;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr12	9725847	rs78525383	T	G	266.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr12	9747744	rs3214342	T	TA	658.73	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:17,20:0.54:37
chr12	9750669	rs1135816	A	G	846.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:59,42:0.42:101
chr12	9751035	rs3072716	C	CAT	7010.73	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr12	9752576	rs67712680	TAAA	T	403.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.54;QD=26.92;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:1,14:0.93:15
chr12	9754221	rs3072720	A	AAAAC	11228.73	.	AC=2;AF=1.00;AN=2;DB;DP=351;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.40;QD=44.21;SOR=1.591;set=HC	GT:AD:AF:DP	1/1:0,254:1.00:254
chr12	9832822	rs2114872	C	T	1457.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr12	9832882	rs2114873	T	C	901.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr12	9833524	rs3764022	C	G	1425.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:52,67:0.56:119
chr12	9833628	rs3764021	C	T	1446.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:53,70:0.57:123
chr12	9840773	rs7310460	T	A	575.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.698;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=-0.924;QD=11.07;ReadPosRankSum=-0.442;SOR=0.781;set=HC	GT:AD:AF:DP	0/1:27,25:0.48:52
chr12	9846521	rs7968401	C	G	343.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:15,15:0.50:30
chr12	9869271	rs2268146	A	G	643.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:53,33:0.38:86
chr12	9885526	rs12304510	C	T	2940.77	.	AC=1;AF=0.500;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	0/1:190,143:0.43:333
chr12	9885707	rs71045297	A	ATAAGT	9367.73	.	AC=1;AF=0.500;AN=2;DB;DP=500;MQ=60.22;set=Intersection	GT:AD:AF:DP	0/1:223,240:0.52:463
chr12	9906067	rs1051065	T	C	1298.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr12	9906350	rs57931161	GA	G	520.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr12	9980243	rs2232543	A	G	4931.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr12	9994445	rs33911869	GTGT	G	4823.73	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr12	10014936	rs253148	A	T	111.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr12	10015082	rs253147	G	A	1257.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr12	10015177	rs253146	A	G	1421.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr12	10041364	rs1797517	G	A	9371.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:0,355:1.00:355
chr12	10045694	rs184171143	C	G	3580.77	.	AC=1;AF=0.500;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	0/1:188,171:0.48:359
chr12	10046052	rs576601	C	A	8394.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr12	10051433	rs1407899	A	T	2608.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr12	10069302	rs526680	C	T	6682.77	.	AC=1;AF=0.500;AN=2;DB;DP=675;set=Intersection	GT:AD:AF:DP	0/1:340,321:0.49:661
chr12	10078829	rs11053513	C	T	1538.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:96,75:0.44:171
chr12	10131684	rs607567	T	G	4086.77	.	AC=1;AF=0.500;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	0/1:217,187:0.46:404
chr12	10136672	rs2961544	G	A	550.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:19,24:0.56:43
chr12	10137557	rs479499	A	C	1620.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:62,75:0.55:137
chr12	10137645	rs588272	T	G	437.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:17,17:0.50:34
chr12	10138830	rs576031	C	T	357.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:5,14:0.74:19
chr12	10146005	rs11412323	C	CA,CAA	914.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.685;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=3.944;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=17.26;ReadPosRankSum=0.974;SOR=2.636;set=HC	GT:AD:AF:DP	1/2:5,36,12:0.68,0.23:53
chr12	10149851	rs583903	C	T	9145.77	.	AC=2;AF=1.00;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	1/1:0,349:1.00:349
chr12	10150961	rs2273987	G	A	4381.77	.	AC=1;AF=0.500;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	0/1:235,216:0.48:451
chr12	10150974	rs2273986	A	G	13890.77	.	AC=2;AF=1.00;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	1/1:0,390:1.00:390
chr12	10151642	rs612593	T	C	11243.77	.	AC=2;AF=1.00;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	1/1:0,420:1.00:420
chr12	10151762	rs11379994	T	TC	19715.73	.	AC=2;AF=1.00;AN=2;DB;DP=538;set=Intersection	GT:AD:AF:DP	1/1:0,515:1.00:515
chr12	10163375	rs1359082	C	A	5664.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.561;ClippingRankSum=0.000;DB;DP=341;ExcessHet=3.0103;FS=0.402;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.81;ReadPosRankSum=-0.259;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:188,149:0.44:337
chr12	10163379	rs1359083	C	T	5765.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.853;ClippingRankSum=0.000;DB;DP=357;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.33;ReadPosRankSum=-0.118;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:197,156:0.44:353
chr12	10165469	rs476474	A	G	3869.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr12	10165593	rs620449	T	G	1867.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:54,86:0.61:140
chr12	10167277	rs637790	G	C	11380.77	.	AC=2;AF=1.00;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	1/1:0,416:1.00:416
chr12	10205420	.	G	GT	355.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.393;ClippingRankSum=0.000;DP=221;ExcessHet=3.0103;FS=6.983;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.31;ReadPosRankSum=-1.090;SOR=0.276;set=HC	GT:AD:AF:DP	0/1:111,43:0.28:154
chr12	10206925	rs7315231	A	G	3829.77	.	AC=1;AF=0.500;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	0/1:173,188:0.52:361
chr12	10215582	rs10772230	G	A	705.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:25,28:0.53:53
chr12	10217326	rs10622534	C	CTT	11015.73	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr12	10241541	rs11376074	A	AT	813.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=33.91;SOR=5.670;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr12	10241553	rs5008763	C	A	1017.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.70;SOR=3.180;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr12	10241593	rs1352477	A	T	2114.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr12	10241829	rs2277416	G	T	7055.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr12	10245158	rs11347002	GA	G	887.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr12	10245237	rs11444183	G	GT	245.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr12	10251256	rs10706436	GA	G	915.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr12	10251287	rs6488257	C	T	1836.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr12	10251385	rs3816845	T	C	5626.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr12	10251445	rs2306894	C	G	7552.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr12	10271055	rs7959451	T	C	13457.77	.	AC=2;AF=1.00;AN=2;DB;DP=504;set=Intersection	GT:AD:AF:DP	1/1:0,499:1.00:499
chr12	10275684	rs11053608	T	G	216.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:10,11:0.52:21
chr12	10279513	rs35532667	T	TA	983.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.690;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=0.000;QD=10.81;ReadPosRankSum=1.677;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:25,66:0.73:91
chr12	10312648	rs13306593	C	A	2134.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.487;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=4.104;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.00;ReadPosRankSum=0.994;SOR=0.475;set=HC	GT:AD:AF:DP	0/1:87,107:0.55:194
chr12	10312691	rs17174597	T	C	1377.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:50,57:0.53:107
chr12	10312878	rs2634156	C	T	4252.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr12	10312914	rs3816844	G	A	2643.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:115,127:0.52:242
chr12	10313075	rs3736235	T	C	1381.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:76,68:0.47:144
chr12	10313134	rs3736234	G	A	868.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:35,37:0.51:72
chr12	10313358	rs3736232	C	G	2812.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:126,127:0.50:253
chr12	10339178	rs4764308	C	T	4281.77	.	AC=1;AF=0.500;AN=2;DB;DP=492;set=Intersection	GT:AD:AF:DP	0/1:266,224:0.46:490
chr12	10373324	rs7301041	T	A	1909.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr12	10460543	rs2302489	A	T	5550.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:1,197:0.99:198
chr12	10461883	rs10734825	A	G	4069.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr12	10462052	rs10772256	T	G	6586.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr12	10462431	rs7980604	G	A	1355.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr12	10467533	rs2537752	T	A	777.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr12	10511662	rs10743886	C	T	6079.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:2,232:0.99:234
chr12	10525644	rs1351113	A	G	8195.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr12	10525740	rs1049172	C	T	15153.77	.	AC=2;AF=1.00;AN=2;DB;DP=582;set=Intersection	GT:AD:AF:DP	1/1:2,574:1.00:576
chr12	10531896	rs2255364	C	T	348.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr12	10532111	rs2255353	T	G	1047.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr12	10532326	rs2255336	T	C	4162.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:2,161:0.99:163
chr12	10532434	rs2617151	A	G	2455.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr12	10560824	rs2617169	T	A	1306.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr12	10560957	rs2617170	T	C	4173.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr12	10561913	rs3214902	TA	T	3236.73	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:77,102:0.57:179
chr12	10562025	rs1841957	C	T	13509.77	.	AC=2;AF=1.00;AN=2;DB;DP=493;set=Intersection	GT:AD:AF:DP	1/1:0,488:1.00:488
chr12	10562089	rs1841958	A	C	16410.77	.	AC=2;AF=1.00;AN=2;DB;DP=612;set=Intersection	GT:AD:AF:DP	1/1:3,604:1.00:607
chr12	10565113	rs17548983	T	C	1617.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:109,85:0.44:194
chr12	10570965	rs2682495	C	G	14261.77	.	AC=2;AF=1.00;AN=2;DB;DP=533;set=Intersection	GT:AD:AF:DP	1/1:0,530:1.00:530
chr12	10571042	rs2741882	A	G	9579.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:0,348:1.00:348
chr12	10571091	rs2682494	T	G	6643.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr12	10571106	rs2682493	G	C	9086.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr12	10571158	rs10743890	C	T	7185.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr12	10571177	rs4394921	A	G	7631.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr12	10571504	rs4579992	C	T	3677.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.52;QD=44.85;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr12	10571514	rs4275705	C	G	3678.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.00;QD=44.32;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr12	10571536	rs33947579	A	AT	1869.73	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.38;QD=28.77;SOR=1.999;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr12	10571622	rs4093355	G	A	756.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=38.92;QD=31.53;SOR=6.439;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr12	10571650	rs28521176	G	C	198.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=36.67;QD=24.85;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr12	10572544	rs143188402	T	C	106.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=26.51;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr12	10572687	rs2682492	G	T	567.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr12	10572839	rs2253365	A	T	2541.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr12	10572982	rs2741881	A	G	13747.77	.	AC=2;AF=1.00;AN=2;DB;DP=513;set=Intersection	GT:AD:AF:DP	1/1:0,511:1.00:511
chr12	10573094	rs2682491	C	G	8150.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.041;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=6.284;MLEAC=2;MLEAF=1.000;MQ=55.92;MQRankSum=1.432;QD=43.59;ReadPosRankSum=1.990;SOR=2.394;set=HC	GT:AD:AF:DP	1/1:1,186:0.99:187
chr12	10573094	.	CA	GG	2944	.	AC=1;AF=0.500;AN=2;BRF=0.54;FR=0.5002;HP=1;HapScore=1;MGOF=18;MMLQ=24;MQ=40.93;NF=50;NR=119;PP=2944;QD=20;SC=CCTTTGCTGCCACTTTGGGTC;SbPval=0.83;Source=Platypus;TC=191;TCF=69;TCR=122;TR=169;WE=10573103;WS=10573084;set=Platypus	GT:AD:AF:DP	0/1:22,169:0.88:191
chr12	10573095	rs2682490	A	G	8150.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.251;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=6.508;MLEAC=2;MLEAF=1.000;MQ=55.58;MQRankSum=1.359;QD=45.54;ReadPosRankSum=2.040;SOR=2.526;set=HC	GT:AD:AF:DP	1/1:1,178:0.99:179
chr12	10573145	rs2682489	C	T	1490.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.144;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=61.716;MLEAC=1;MLEAF=0.500;MQ=43.89;MQRankSum=-4.454;QD=19.11;ReadPosRankSum=-3.754;SOR=6.593;set=HC	GT:AD:AF:DP	0/1:24,54:0.69:78
chr12	10573211	rs10734829	A	G	232.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.680;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=22.989;MLEAC=1;MLEAF=0.500;MQ=44.87;MQRankSum=-4.719;QD=7.05;ReadPosRankSum=0.433;SOR=4.977;set=HC	GT:AD:AF:DP	0/1:22,11:0.33:33
chr12	10579308	rs117236878	T	C	199.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:30,13:0.30:43
chr12	10583611	rs3003	C	T	1596.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr12	10583696	rs2981593	C	T	2387.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:124,115:0.48:239
chr12	10586921	.	C	T	339.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.044;ClippingRankSum=0.000;DP=178;ExcessHet=3.0103;FS=28.810;MLEAC=1;MLEAF=0.500;MQ=52.97;MQRankSum=-6.641;QD=1.91;ReadPosRankSum=-3.427;SOR=4.642;set=HC	GT:AD:AF:DP	0/1:163,15:0.08:178
chr12	10586946	rs113946028	C	T	3048.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.400;ClippingRankSum=0.000;DB;DP=313;ExcessHet=3.0103;FS=24.703;MLEAC=1;MLEAF=0.500;MQ=49.78;MQRankSum=-8.119;QD=9.74;ReadPosRankSum=-6.040;SOR=1.827;set=HC	GT:AD:AF:DP	0/1:227,86:0.27:313
chr12	10586956	rs72475445	C	G	3777.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.802;ClippingRankSum=0.000;DB;DP=395;ExcessHet=3.0103;FS=17.340;MLEAC=1;MLEAF=0.500;MQ=50.99;MQRankSum=-4.822;QD=9.56;ReadPosRankSum=-5.771;SOR=1.378;set=HC	GT:AD:AF:DP	0/1:268,127:0.32:395
chr12	10586961	rs1356930	T	C	6506.77	.	AC=1;AF=0.500;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	0/1:137,281:0.67:418
chr12	10586978	rs144149096	A	AT	3987.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.218;ClippingRankSum=0.000;DB;DP=554;ExcessHet=3.0103;FS=5.449;MLEAC=1;MLEAF=0.500;MQ=52.64;MQRankSum=-3.003;QD=7.21;ReadPosRankSum=-2.436;SOR=1.119;set=HC	GT:AD:AF:DP	0/1:357,196:0.35:553
chr12	10586989	rs5796394	AT	A	3728.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.060;ClippingRankSum=0.000;DB;DP=665;ExcessHet=3.0103;FS=1.966;MLEAC=1;MLEAF=0.500;MQ=53.58;MQRankSum=-0.642;QD=5.63;ReadPosRankSum=1.773;SOR=0.508;set=HC	GT:AD:AF:DP	0/1:464,198:0.30:662
chr12	10587111	rs61917677	A	G	17864.77	.	AC=2;AF=1.00;AN=2;DB;DP=667;set=Intersection	GT:AD:AF:DP	1/1:0,660:1.00:660
chr12	10587158	rs35801775	A	T	2969.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:157,131:0.45:288
chr12	10587631	rs144960284	C	T	1625.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:92,78:0.46:170
chr12	10588530	rs75545535	C	G	3012.77	.	AC=1;AF=0.500;AN=2;DB;DP=548;set=Intersection	GT:AD:AF:DP	0/1:359,185:0.34:544
chr12	10588581	rs28403159	T	C	3459.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:193,138:0.42:331
chr12	10588647	rs28730284	A	G	1680.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:49,70:0.59:119
chr12	10594848	rs78547237	C	A	555.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.09;QD=30.88;SOR=3.500;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr12	10599347	rs2682471	T	G	632.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:97,35:0.27:132
chr12	10599427	rs4763533	C	T	466.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:17,20:0.54:37
chr12	10602077	rs2734440	C	T	3049.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr12	10603670	rs2253849	T	C	9535.77	.	AC=2;AF=1.00;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	1/1:0,359:1.00:359
chr12	10658507	rs10845152	G	A	6207.77	.	AC=1;AF=0.500;AN=2;DB;DP=535;set=Intersection	GT:AD:AF:DP	0/1:240,289:0.55:529
chr12	10659228	rs11053826	A	T	7631.77	.	AC=1;AF=0.500;AN=2;DB;DP=834;set=Intersection	GT:AD:AF:DP	0/1:446,370:0.45:816
chr12	10659438	rs10772299	T	C	12842.77	.	AC=2;AF=1.00;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	1/1:0,454:1.00:454
chr12	10659964	rs10772300	C	G	4453.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr12	10675250	rs7980396	G	C	15309.77	.	AC=2;AF=1.00;AN=2;DB;DP=576;set=Intersection	GT:AD:AF:DP	1/1:0,574:1.00:574
chr12	10675295	rs10845155	G	A	5165.77	.	AC=1;AF=0.500;AN=2;DB;DP=505;set=Intersection	GT:AD:AF:DP	0/1:251,247:0.50:498
chr12	10746385	rs2244387	G	A	3261.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr12	10748314	rs2168749	C	T	2963.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr12	10748403	rs2682484	A	T	4932.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr12	10759032	rs10772333	T	C	2178.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr12	10760328	rs3947920	G	A	3092.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.18;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr12	10760335	rs2125090	T	A	3183.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.61;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr12	10760380	rs2125089	G	A	2626.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr12	10762069	rs7311796	G	A	2803.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr12	10763236	rs10845182	G	C	794.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr12	10763419	rs72054859	CTAGACATG	C	406.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr12	10763440	rs12811247	G	T	273.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr12	10766244	rs10772335	A	C	10765.77	.	AC=2;AF=1.00;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	1/1:0,407:1.00:407
chr12	10772983	rs1870194	A	G	589.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:16,21:0.57:37
chr12	10774698	rs2900467	A	G	374.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr12	10782115	rs3759259	T	C	4436.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr12	10784021	rs2168746	G	C	811.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr12	10786757	rs5796407	T	TGAA	10261.73	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr12	10786797	rs2252664	C	T	4482.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr12	10854625	rs10845205	G	A	2139.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:110,100:0.48:210
chr12	10854763	rs73044645	G	A	2849.77	.	AC=1;AF=0.500;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	0/1:183,141:0.44:324
chr12	10854878	rs3782670	A	G	374.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:21,17:0.45:38
chr12	10856219	rs2418102	C	T	2612.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:156,129:0.45:285
chr12	10856845	rs141466000	CA	C	841.73	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:43,39:0.48:82
chr12	10868142	.	T	TA	107.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.317;ClippingRankSum=0.000;DP=210;ExcessHet=3.0103;FS=4.040;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=0.000;QD=0.54;ReadPosRankSum=0.682;SOR=0.362;set=HC	GT:AD:AF:DP	0/1:163,35:0.18:198
chr12	10871667	rs33016	A	G	4038.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr12	10875488	rs1126501	T	C	5658.77	.	AC=1;AF=0.500;AN=2;DB;DP=708;MQ=59.98;set=Intersection	GT:AD:AF:DP	0/1:375,292:0.44:667
chr12	10958658	rs2537817	T	C	1192.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr12	10959031	rs1548803	C	T	11233.77	.	AC=2;AF=1.00;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	1/1:0,399:1.00:399
chr12	10962115	rs3741845	A	G	9611.77	.	AC=2;AF=1.00;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	1/1:0,363:1.00:363
chr12	10978402	rs597468	G	A	4448.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr12	10998556	rs71434160	C	CA	260.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.068;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=1.883;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.17;ReadPosRankSum=1.373;SOR=0.457;set=HC	GT:AD:AF:DP	0/1:88,32:0.27:120
chr12	10999708	rs1047699	T	C	5989.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr12	10999780	rs1063193	C	T	6161.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr12	11035274	rs28607516	G	T	2227.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.63;QD=30.10;SOR=2.864;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr12	11035368	rs11054060	T	G	3675.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr12	11035482	rs10845228	T	C	8449.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr12	11035533	rs10845229	G	A	13915.77	.	AC=2;AF=1.00;AN=2;DB;DP=525;set=Intersection	GT:AD:AF:DP	1/1:0,520:1.00:520
chr12	11061122	rs1015443	T	C	9372.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:0,330:1.00:330
chr12	11083356	rs116998526	A	G	1461.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.817;ClippingRankSum=0.000;DB;DP=582;ExcessHet=3.0103;FS=8.180;MLEAC=1;MLEAF=0.500;MQ=56.56;MQRankSum=-5.325;QD=2.57;ReadPosRankSum=-2.281;SOR=1.421;set=HC	GT:AD:AF:DP	0/1:457,112:0.20:569
chr12	11083677	rs10772391	T	C	1076.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr12	11091432	rs3741843	C	T	10537.77	.	AC=2;AF=1.00;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	1/1:0,361:1.00:361
chr12	11138683	rs10772397	C	T	15328.77	.	AC=2;AF=1.00;AN=2;DB;DP=587;set=Intersection	GT:AD:AF:DP	1/1:0,576:1.00:576
chr12	11138852	rs1376251	C	T	3326.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:135,151:0.53:286
chr12	11149532	rs1450839	A	G	3974.77	.	AC=1;AF=0.500;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	0/1:260,209:0.45:469
chr12	11149711	rs10845279	C	A	6880.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.767;ClippingRankSum=0.000;DB;DP=405;ExcessHet=3.0103;FS=7.316;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.29;ReadPosRankSum=0.783;SOR=0.458;set=HC	GT:AD:AF:DP	0/1:209,189:0.47:398
chr12	11149720	rs10845280	A	G	6792.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.787;ClippingRankSum=0.000;DB;DP=369;ExcessHet=3.0103;FS=6.180;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.71;ReadPosRankSum=1.272;SOR=0.470;set=HC	GT:AD:AF:DP	0/1:188,175:0.48:363
chr12	11149769	rs10845281	T	C	3230.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:136,142:0.51:278
chr12	11150033	rs12226919	G	T	6184.77	.	AC=1;AF=0.500;AN=2;DB;DP=682;set=Intersection	GT:AD:AF:DP	0/1:373,299:0.44:672
chr12	11150046	rs12226920	G	T	11468.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.815;ClippingRankSum=0.000;DB;DP=679;ExcessHet=3.0103;FS=0.523;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.07;ReadPosRankSum=-1.713;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:366,306:0.46:672
chr12	11150054	rs79420812	C	T	11460.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.555;ClippingRankSum=0.000;DB;DP=685;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.00;ReadPosRankSum=-2.126;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:364,310:0.46:674
chr12	11150319	rs11054143	T	C	2121.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:93,96:0.51:189
chr12	11150540	rs34965724	CA	C	2055.73	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:50,66:0.57:116
chr12	11150551	rs4388985	G	A	4041.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr12	11150579	rs1463237	C	T	1780.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr12	11174181	rs79561087	T	C	1862.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.181;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=18.299;MLEAC=1;MLEAF=0.500;MQ=59.07;MQRankSum=-7.795;QD=9.96;ReadPosRankSum=-0.882;SOR=2.507;set=HC	GT:AD:AF:DP	0/1:135,52:0.28:187
chr12	11174186	rs79057393	C	T	1985.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.783;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=24.213;MLEAC=1;MLEAF=0.500;MQ=59.16;MQRankSum=-7.950;QD=9.50;ReadPosRankSum=0.274;SOR=2.804;set=HC	GT:AD:AF:DP	0/1:153,56:0.27:209
chr12	11174202	.	G	C	2888.77	.	AC=1;AF=0.500;AN=2;DP=286;set=Intersection	GT:AD:AF:DP	0/1:203,82:0.29:285
chr12	11174213	rs114463974	G	A	3588.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.909;ClippingRankSum=0.000;DB;DP=359;ExcessHet=3.0103;FS=21.061;MLEAC=1;MLEAF=0.500;MQ=59.43;MQRankSum=-7.691;QD=10.05;ReadPosRankSum=0.932;SOR=1.706;set=HC	GT:AD:AF:DP	0/1:256,101:0.28:357
chr12	11174219	rs79407997	C	A	4283.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.330;ClippingRankSum=0.000;DB;DP=401;ExcessHet=3.0103;FS=13.663;MLEAC=1;MLEAF=0.500;MQ=59.45;MQRankSum=-7.977;QD=10.74;ReadPosRankSum=-0.584;SOR=1.300;set=HC	GT:AD:AF:DP	0/1:278,121:0.30:399
chr12	11174223	rs74363809	G	C	4403.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.003;ClippingRankSum=0.000;DB;DP=440;ExcessHet=3.0103;FS=2.982;MLEAC=1;MLEAF=0.500;MQ=59.47;MQRankSum=-8.298;QD=10.08;ReadPosRankSum=-0.419;SOR=1.023;set=HC	GT:AD:AF:DP	0/1:305,132:0.30:437
chr12	11174261	rs75441696	C	G	8599.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.445;ClippingRankSum=0.000;DB;DP=700;ExcessHet=3.0103;FS=2.684;MLEAC=1;MLEAF=0.500;MQ=59.49;MQRankSum=-8.418;QD=12.36;ReadPosRankSum=-1.042;SOR=0.920;set=HC	GT:AD:AF:DP	0/1:463,233:0.33:696
chr12	11174264	rs77074409	C	A	8724.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.753;ClippingRankSum=0.000;DB;DP=713;ExcessHet=3.0103;FS=3.515;MLEAC=1;MLEAF=0.500;MQ=59.52;MQRankSum=-8.189;QD=12.31;ReadPosRankSum=-1.317;SOR=0.940;set=HC	GT:AD:AF:DP	0/1:468,241:0.34:709
chr12	11174271	rs79475879	T	C	9554.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.093;ClippingRankSum=0.000;DB;DP=782;ExcessHet=3.0103;FS=2.653;MLEAC=1;MLEAF=0.500;MQ=59.53;MQRankSum=-8.536;QD=12.28;ReadPosRankSum=-0.209;SOR=0.889;set=HC	GT:AD:AF:DP	0/1:518,260:0.33:778
chr12	11174276	rs10772420	G	A	12325.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.387;ClippingRankSum=0.000;DB;DP=830;ExcessHet=3.0103;FS=2.607;MLEAC=1;MLEAF=0.500;MQ=59.56;MQRankSum=-4.413;QD=15.05;ReadPosRankSum=-0.114;SOR=0.883;set=HC	GT:AD:AF:DP	0/1:285,534:0.65:819
chr12	11174277	.	T	C	5106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.612;ClippingRankSum=0.000;DP=836;ExcessHet=3.0103;FS=3.542;MLEAC=1;MLEAF=0.500;MQ=59.56;MQRankSum=-8.701;QD=6.22;ReadPosRankSum=0.822;SOR=0.960;set=HC	GT:AD:AF:DP	0/1:554,267:0.33:821
chr12	11174282	rs74386164	T	C	11245.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.014;ClippingRankSum=0.000;DB;DP=888;ExcessHet=3.0103;FS=3.470;MLEAC=1;MLEAF=0.500;MQ=59.57;MQRankSum=-8.447;QD=12.74;ReadPosRankSum=-0.237;SOR=0.955;set=HC	GT:AD:AF:DP	0/1:579,304:0.34:883
chr12	11174286	rs77837442	C	A	11940.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.577;ClippingRankSum=0.000;DB;DP=931;ExcessHet=3.0103;FS=3.418;MLEAC=1;MLEAF=0.500;MQ=59.60;MQRankSum=-8.150;QD=12.89;ReadPosRankSum=-0.006;SOR=0.937;set=HC	GT:AD:AF:DP	0/1:605,321:0.35:926
chr12	11174302	rs72475480	A	G	8510.77	.	AC=1;AF=0.500;AN=2;DB;DP=1065;set=Intersection	GT:AD:AF:DP	0/1:672,386:0.36:1058
chr12	11174327	rs72475481	C	T	8887.77	.	AC=1;AF=0.500;AN=2;DB;DP=1139;set=Intersection	GT:AD:AF:DP	0/1:711,419:0.37:1130
chr12	11174372	rs74772077	C	G	11809.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.393;ClippingRankSum=0.000;DB;DP=940;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.06;MQRankSum=-10.342;QD=12.66;ReadPosRankSum=-0.895;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:580,353:0.38:933
chr12	11174380	rs76970958	C	T	12023.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.793;ClippingRankSum=0.000;DB;DP=867;ExcessHet=3.0103;FS=0.538;MLEAC=1;MLEAF=0.500;MQ=58.98;MQRankSum=-10.324;QD=13.96;ReadPosRankSum=-1.009;SOR=0.642;set=HC	GT:AD:AF:DP	0/1:537,324:0.38:861
chr12	11174390	rs74992161	G	A	10479.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.329;ClippingRankSum=0.000;DB;DP=810;ExcessHet=3.0103;FS=0.548;MLEAC=1;MLEAF=0.500;MQ=58.89;MQRankSum=-10.849;QD=13.03;ReadPosRankSum=0.436;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:519,285:0.35:804
chr12	11174397	rs76455106	T	A	9772.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.812;ClippingRankSum=0.000;DB;DP=763;ExcessHet=3.0103;FS=0.551;MLEAC=1;MLEAF=0.500;MQ=58.78;MQRankSum=-11.373;QD=12.91;ReadPosRankSum=0.632;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:495,262:0.35:757
chr12	11174416	rs112900131	A	G	4295.77	.	AC=1;AF=0.500;AN=2;DB;DP=604;set=Intersection	GT:AD:AF:DP	0/1:385,213:0.36:598
chr12	11174466	rs199592952	G	A	1847.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.512;ClippingRankSum=0.000;DB;DP=375;ExcessHet=3.0103;FS=66.792;MLEAC=1;MLEAF=0.500;MQ=57.90;MQRankSum=-16.330;QD=5.02;ReadPosRankSum=-0.116;SOR=3.156;set=HC	GT:AD:AF:DP	0/1:298,70:0.19:368
chr12	11174476	rs200081075	G	A	1481.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.216;ClippingRankSum=0.000;DB;DP=355;ExcessHet=3.0103;FS=86.789;MLEAC=1;MLEAF=0.500;MQ=57.93;MQRankSum=-17.990;QD=4.23;ReadPosRankSum=-0.237;SOR=4.549;set=HC	GT:AD:AF:DP	0/1:297,53:0.15:350
chr12	11174478	.	C	A	1292.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.816;ClippingRankSum=0.000;DP=347;ExcessHet=3.0103;FS=84.001;MLEAC=1;MLEAF=0.500;MQ=57.88;MQRankSum=-17.978;QD=3.78;ReadPosRankSum=-0.975;SOR=4.494;set=HC	GT:AD:AF:DP	0/1:290,52:0.15:342
chr12	11174753	rs1868769	G	A	13672.77	.	AC=2;AF=1.00;AN=2;DB;DP=488;set=Intersection	GT:AD:AF:DP	1/1:0,483:1.00:483
chr12	11175087	rs12313469	G	A	4985.77	.	AC=1;AF=0.500;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	0/1:200,210:0.51:410
chr12	11182989	rs11522329	T	C	1305.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.422;ClippingRankSum=0.000;DB;DP=1463;ExcessHet=3.0103;FS=2.573;MLEAC=1;MLEAF=0.500;MQ=57.91;MQRankSum=-23.974;QD=0.90;ReadPosRankSum=4.495;SOR=0.482;set=HC	GT:AD:AF:DP	0/1:1234,222:0.15:1456
chr12	11182998	rs200315131	CA	TC	17852.73	.	AC=1;AF=0.500;AN=2;DB;DP=1507;JOINED;set=Intersection	GT:AD:AF:DP	0/1:1000,500:0.33:1500
chr12	11183035	rs78820764	C	T	4589.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.561;ClippingRankSum=0.000;DB;DP=1502;ExcessHet=3.0103;FS=3.802;MLEAC=1;MLEAF=0.500;MQ=57.99;MQRankSum=-24.659;QD=3.08;ReadPosRankSum=1.518;SOR=0.905;set=HC	GT:AD:AF:DP	0/1:1276,215:0.14:1491
chr12	11183042	rs3759246	C	G	6409.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.436;ClippingRankSum=0.000;DB;DP=1482;ExcessHet=3.0103;FS=2.453;MLEAC=1;MLEAF=0.500;MQ=58.12;MQRankSum=-14.691;QD=4.37;ReadPosRankSum=1.087;SOR=0.806;set=HC	GT:AD:AF:DP	0/1:1220,248:0.17:1468
chr12	11183046	rs201730548	C	T	14988.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.065;ClippingRankSum=0.000;DB;DP=1466;ExcessHet=3.0103;FS=6.717;MLEAC=1;MLEAF=0.500;MQ=58.22;MQRankSum=-30.284;QD=10.32;ReadPosRankSum=1.936;SOR=0.868;set=HC	GT:AD:AF:DP	0/1:1027,425:0.29:1452
chr12	11183052	rs199894662	G	A	13812.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.766;ClippingRankSum=0.000;DB;DP=1438;ExcessHet=3.0103;FS=5.785;MLEAC=1;MLEAF=0.500;MQ=58.08;MQRankSum=-27.954;QD=9.70;ReadPosRankSum=1.877;SOR=0.956;set=HC	GT:AD:AF:DP	0/1:1034,390:0.27:1424
chr12	11183066	rs138895028	A	T	11435.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.899;ClippingRankSum=0.000;DB;DP=1415;ExcessHet=3.0103;FS=8.613;MLEAC=1;MLEAF=0.500;MQ=57.04;MQRankSum=-21.469;QD=8.15;ReadPosRankSum=-1.166;SOR=1.162;set=HC	GT:AD:AF:DP	0/1:1057,346:0.25:1403
chr12	11183107	.	T	C	2460.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.989;ClippingRankSum=0.000;DP=1240;ExcessHet=3.0103;FS=24.153;MLEAC=1;MLEAF=0.500;MQ=55.12;MQRankSum=-16.872;QD=2.01;ReadPosRankSum=-3.686;SOR=3.028;set=HC	GT:AD:AF:DP	0/1:1074,153:0.12:1227
chr12	11183108	rs12318612	G	C	8967.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.379;ClippingRankSum=0.000;DB;DP=1241;ExcessHet=3.0103;FS=1.800;MLEAC=1;MLEAF=0.500;MQ=55.12;MQRankSum=-1.992;QD=7.30;ReadPosRankSum=0.196;SOR=0.541;set=HC	GT:AD:AF:DP	0/1:749,479:0.39:1228
chr12	11183114	.	AT	GC	1809.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=15.806;ClippingRankSum=0.000;DP=1235;ExcessHet=3.0103;FS=37.906;JOINED;MLEAC=1;MLEAF=0.500;MQ=55.11;MQRankSum=-17.293;QD=1.48;ReadPosRankSum=-1.281;SOR=4.937;set=HC	GT:AD:AF:DP	0/1:1102,120:0.10:1222
chr12	11183121	.	G	A	1226.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=13.464;ClippingRankSum=0.000;DP=1244;ExcessHet=3.0103;FS=44.298;MLEAC=1;MLEAF=0.500;MQ=55.22;MQRankSum=-17.463;QD=1.00;ReadPosRankSum=-0.717;SOR=9.210;set=HC	GT:AD:AF:DP	0/1:1127,105:0.09:1232
chr12	11183123	rs201103714	T	C	894.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=18.903;ClippingRankSum=0.000;DB;DP=1242;ExcessHet=3.0103;FS=41.369;MLEAC=1;MLEAF=0.500;MQ=55.21;MQRankSum=-17.065;QD=0.73;ReadPosRankSum=-0.468;SOR=9.110;set=HC	GT:AD:AF:DP	0/1:1130,100:0.08:1230
chr12	11183133	.	T	C	149.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=17.165;ClippingRankSum=0.000;DP=1241;ExcessHet=3.0103;FS=35.012;MLEAC=1;MLEAF=0.500;MQ=55.19;MQRankSum=-16.356;QD=0.12;ReadPosRankSum=-1.608;SOR=8.791;set=HC	GT:AD:AF:DP	0/1:1146,86:0.07:1232
chr12	11183217	rs10772423	C	T	7770.77	.	AC=1;AF=0.500;AN=2;DB;DP=835;set=Intersection	GT:AD:AF:DP	0/1:468,361:0.44:829
chr12	11183255	rs10845293	G	A	6381.77	.	AC=1;AF=0.500;AN=2;DB;DP=669;set=Intersection	GT:AD:AF:DP	0/1:362,302:0.45:664
chr12	11183286	rs10845294	G	C	6316.77	.	AC=1;AF=0.500;AN=2;DB;DP=635;set=Intersection	GT:AD:AF:DP	0/1:354,274:0.44:628
chr12	11183451	rs10743938	A	T	20693.77	.	AC=2;AF=1.00;AN=2;DB;DP=748;set=Intersection	GT:AD:AF:DP	1/1:2,742:1.00:744
chr12	11183475	rs372544509	G	A	96.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.617;ClippingRankSum=0.000;DB;DP=724;ExcessHet=3.0103;FS=26.546;MLEAC=1;MLEAF=0.500;MQ=58.93;MQRankSum=-26.873;QD=0.13;ReadPosRankSum=-3.693;SOR=3.907;set=HC	GT:AD:AF:DP	0/1:678,46:0.06:724
chr12	11183484	.	CT	GA	609.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.937;ClippingRankSum=0.000;DP=711;ExcessHet=3.0103;FS=38.117;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.52;MQRankSum=-26.621;QD=0.86;ReadPosRankSum=-3.878;SOR=4.545;set=HC	GT:AD:AF:DP	0/1:649,62:0.09:711
chr12	11183496	rs199736450	T	C	1347.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.012;ClippingRankSum=0.000;DB;DP=684;ExcessHet=3.0103;FS=30.892;MLEAC=1;MLEAF=0.500;MQ=58.21;MQRankSum=-26.086;QD=1.97;ReadPosRankSum=-1.932;SOR=3.403;set=HC	GT:AD:AF:DP	0/1:609,75:0.11:684
chr12	11183506	rs115707514	T	A	1886.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.445;ClippingRankSum=0.000;DB;DP=689;ExcessHet=3.0103;FS=39.353;MLEAC=1;MLEAF=0.500;MQ=58.04;MQRankSum=-26.158;QD=2.74;ReadPosRankSum=0.060;SOR=3.407;set=HC	GT:AD:AF:DP	0/1:601,88:0.13:689
chr12	11183524	rs75159539	T	C	3429.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.307;ClippingRankSum=0.000;DB;DP=680;ExcessHet=3.0103;FS=22.025;MLEAC=1;MLEAF=0.500;MQ=57.87;MQRankSum=-21.552;QD=5.04;ReadPosRankSum=-0.053;SOR=1.743;set=HC	GT:AD:AF:DP	0/1:549,131:0.19:680
chr12	11183541	rs78152338	T	C	120.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.957;ClippingRankSum=0.000;DB;DP=697;ExcessHet=3.0103;FS=5.875;MLEAC=1;MLEAF=0.500;MQ=57.89;MQRankSum=-10.570;QD=0.17;ReadPosRankSum=-0.419;SOR=1.344;set=HC	GT:AD:AF:DP	0/1:614,82:0.12:696
chr12	11183576	rs72475488	T	C	4782.77	.	AC=1;AF=0.500;AN=2;DB;DP=727;set=Intersection	GT:AD:AF:DP	0/1:464,257:0.36:721
chr12	11183642	rs73049067	A	G	8793.77	.	AC=1;AF=0.500;AN=2;DB;DP=930;set=Intersection	GT:AD:AF:DP	0/1:514,412:0.44:926
chr12	11183676	rs73049072	C	T	12780.77	.	AC=1;AF=0.500;AN=2;DB;DP=910;set=Intersection	GT:AD:AF:DP	0/1:535,371:0.41:906
chr12	11183697	rs73049074	C	A	11802.77	.	AC=1;AF=0.500;AN=2;DB;DP=795;set=Intersection	GT:AD:AF:DP	0/1:478,313:0.40:791
chr12	11183708	rs80125932	T	C	1609.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.430;ClippingRankSum=0.000;DB;DP=743;ExcessHet=3.0103;FS=1.471;MLEAC=1;MLEAF=0.500;MQ=58.67;MQRankSum=-4.885;QD=2.18;ReadPosRankSum=1.072;SOR=0.873;set=HC	GT:AD:AF:DP	0/1:601,139:0.19:740
chr12	11183722	rs78562467	A	C	9445.77	.	AC=1;AF=0.500;AN=2;DB;DP=663;set=Intersection	GT:AD:AF:DP	0/1:405,255:0.39:660
chr12	11183752	rs72475489	T	C	3329.77	.	AC=1;AF=0.500;AN=2;DB;DP=488;set=Intersection	GT:AD:AF:DP	0/1:318,165:0.34:483
chr12	11183793	.	G	C	1115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.269;ClippingRankSum=0.000;DP=345;ExcessHet=3.0103;FS=61.503;MLEAC=1;MLEAF=0.500;MQ=58.03;MQRankSum=-16.002;QD=3.27;ReadPosRankSum=-0.002;SOR=3.729;set=HC	GT:AD:AF:DP	0/1:290,51:0.15:341
chr12	11183797	.	C	T	959.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.358;ClippingRankSum=0.000;DP=329;ExcessHet=3.0103;FS=66.439;MLEAC=1;MLEAF=0.500;MQ=57.99;MQRankSum=-17.237;QD=2.95;ReadPosRankSum=0.655;SOR=4.329;set=HC	GT:AD:AF:DP	0/1:282,43:0.13:325
chr12	11183809	.	A	G	475.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.159;ClippingRankSum=0.000;DP=318;ExcessHet=3.0103;FS=83.882;MLEAC=1;MLEAF=0.500;MQ=58.22;MQRankSum=-17.653;QD=1.52;ReadPosRankSum=0.547;SOR=6.839;set=HC	GT:AD:AF:DP	0/1:281,32:0.10:313
chr12	11183827	.	G	C	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.873;ClippingRankSum=0.000;DP=352;ExcessHet=3.0103;FS=67.841;MLEAC=1;MLEAF=0.500;MQ=58.74;MQRankSum=-18.491;QD=0.12;ReadPosRankSum=-1.425;SOR=6.418;set=HC	GT:AD:AF:DP	0/1:318,25:0.07:343
chr12	11183832	rs10845295	G	A	4581.77	.	AC=1;AF=0.500;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	0/1:161,189:0.54:350
chr12	11199734	rs2597984	T	C	4648.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr12	11201689	rs2597986	C	T	2653.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr12	11201846	rs199838132	A	C	2939.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.097;ClippingRankSum=0.000;DB;DP=297;ExcessHet=3.0103;FS=6.965;MLEAC=1;MLEAF=0.500;MQ=58.06;MQRankSum=-11.484;QD=9.97;ReadPosRankSum=2.392;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:208,87:0.29:295
chr12	11201850	.	TATC	T	2932.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.573;ClippingRankSum=0.000;DP=288;ExcessHet=3.0103;FS=7.985;MLEAC=1;MLEAF=0.500;MQ=58.00;MQRankSum=-11.261;QD=10.25;ReadPosRankSum=1.434;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:199,87:0.30:286
chr12	11201865	.	AAT	A	1422.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.683;ClippingRankSum=0.000;DP=242;ExcessHet=3.0103;FS=2.042;MLEAC=1;MLEAF=0.500;MQ=58.08;MQRankSum=-9.622;QD=6.05;ReadPosRankSum=2.118;SOR=0.518;set=HC	GT:AD:AF:DP	0/1:173,62:0.26:235
chr12	11201868	.	G	C	919.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.799;ClippingRankSum=0.000;DP=230;ExcessHet=3.0103;FS=2.045;MLEAC=1;MLEAF=0.500;MQ=58.09;MQRankSum=-8.559;QD=4.12;ReadPosRankSum=1.539;SOR=0.511;set=HC	GT:AD:AF:DP	0/1:174,49:0.22:223
chr12	11201872	.	AG	A	570.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.132;ClippingRankSum=0.000;DP=220;ExcessHet=3.0103;FS=1.337;MLEAC=1;MLEAF=0.500;MQ=58.12;MQRankSum=-8.505;QD=2.67;ReadPosRankSum=0.528;SOR=0.580;set=HC	GT:AD:AF:DP	0/1:162,52:0.24:214
chr12	11201889	rs72475501	C	G	1965.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.135;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=3.858;MLEAC=1;MLEAF=0.500;MQ=58.22;MQRankSum=-8.613;QD=10.57;ReadPosRankSum=-1.463;SOR=0.443;set=HC	GT:AD:AF:DP	0/1:131,55:0.30:186
chr12	11201928	rs74318546	C	A	312.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.007;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=2.442;MLEAC=1;MLEAF=0.500;MQ=58.62;MQRankSum=-6.389;QD=3.36;ReadPosRankSum=-3.926;SOR=0.395;set=HC	GT:AD:AF:DP	0/1:75,18:0.19:93
chr12	11201933	rs79649094	T	C	131.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.907;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=1.726;MLEAC=1;MLEAF=0.500;MQ=58.65;MQRankSum=-7.618;QD=1.63;ReadPosRankSum=-0.626;SOR=1.136;set=HC	GT:AD:AF:DP	0/1:73,8:0.10:81
chr12	11201934	rs75574044	G	T	81.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.993;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=1.730;MLEAC=1;MLEAF=0.500;MQ=58.60;MQRankSum=-7.469;QD=1.05;ReadPosRankSum=-0.833;SOR=1.117;set=HC	GT:AD:AF:DP	0/1:70,8:0.10:78
chr12	11201962	rs2597987	T	C	1370.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr12	11214025	rs372278369	A	T	883.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.450;ClippingRankSum=0.000;DB;DP=1168;ExcessHet=3.0103;FS=4.276;MLEAC=1;MLEAF=0.500;MQ=58.83;MQRankSum=-31.287;QD=0.76;ReadPosRankSum=-10.018;SOR=1.133;set=HC	GT:AD:AF:DP	0/1:1021,139:0.12:1160
chr12	11214066	.	T	C	7048.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.681;ClippingRankSum=0.000;DP=1488;ExcessHet=3.0103;FS=0.644;MLEAC=1;MLEAF=0.500;MQ=57.61;MQRankSum=-36.587;QD=4.76;ReadPosRankSum=0.100;SOR=0.791;set=HC	GT:AD:AF:DP	0/1:1158,322:0.22:1480
chr12	11214074	rs200528237	T	C	10877.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.910;ClippingRankSum=0.000;DB;DP=1502;ExcessHet=3.0103;FS=0.626;MLEAC=1;MLEAF=0.500;MQ=57.42;MQRankSum=-36.969;QD=7.28;ReadPosRankSum=2.949;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:1155,340:0.23:1495
chr12	11214080	.	G	A	11041.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.426;ClippingRankSum=0.000;DP=1509;ExcessHet=3.0103;FS=0.625;MLEAC=1;MLEAF=0.500;MQ=57.35;MQRankSum=-37.076;QD=7.35;ReadPosRankSum=4.874;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:1156,347:0.23:1503
chr12	11214082	.	T	C	11226.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.976;ClippingRankSum=0.000;DP=1514;ExcessHet=3.0103;FS=0.625;MLEAC=1;MLEAF=0.500;MQ=57.35;MQRankSum=-37.142;QD=7.44;ReadPosRankSum=5.548;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:1160,348:0.23:1508
chr12	11214091	.	G	C	11495.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-10.261;ClippingRankSum=0.000;DP=1500;ExcessHet=3.0103;FS=1.310;MLEAC=1;MLEAF=0.500;MQ=57.19;MQRankSum=-37.007;QD=7.70;ReadPosRankSum=6.490;SOR=0.626;set=HC	GT:AD:AF:DP	0/1:1135,358:0.24:1493
chr12	11214101	.	C	G	11538.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.193;ClippingRankSum=0.000;DP=1466;ExcessHet=3.0103;FS=1.310;MLEAC=1;MLEAF=0.500;MQ=57.21;MQRankSum=-36.570;QD=7.90;ReadPosRankSum=7.527;SOR=0.605;set=HC	GT:AD:AF:DP	0/1:1109,351:0.24:1460
chr12	11214133	rs76020872	C	T	9496.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.166;ClippingRankSum=0.000;DB;DP=1271;ExcessHet=3.0103;FS=1.304;MLEAC=1;MLEAF=0.500;MQ=57.20;MQRankSum=-33.901;QD=7.50;ReadPosRankSum=1.763;SOR=0.571;set=HC	GT:AD:AF:DP	0/1:959,308:0.24:1267
chr12	11214137	rs76147157	C	T	9328.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.502;ClippingRankSum=0.000;DB;DP=1222;ExcessHet=3.0103;FS=1.329;MLEAC=1;MLEAF=0.500;MQ=57.34;MQRankSum=-33.188;QD=7.66;ReadPosRankSum=1.630;SOR=0.570;set=HC	GT:AD:AF:DP	0/1:932,286:0.23:1218
chr12	11214153	.	C	T	7463.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.924;ClippingRankSum=0.000;DP=1039;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.33;MQRankSum=-31.056;QD=7.21;ReadPosRankSum=-1.981;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:812,223:0.22:1035
chr12	11214156	.	G	T	6672.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.856;ClippingRankSum=0.000;DP=1010;ExcessHet=3.0103;FS=1.399;MLEAC=1;MLEAF=0.500;MQ=57.35;MQRankSum=-31.059;QD=6.63;ReadPosRankSum=-1.834;SOR=0.834;set=HC	GT:AD:AF:DP	0/1:799,207:0.21:1006
chr12	11214161	.	TG	CA	5856.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.153;ClippingRankSum=0.000;DP=960;ExcessHet=3.0103;FS=0.664;JOINED;MLEAC=1;MLEAF=0.500;MQ=57.25;MQRankSum=-30.645;QD=6.13;ReadPosRankSum=-3.365;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:761,195:0.20:956
chr12	11214167	.	G	C	5551.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.799;ClippingRankSum=0.000;DP=906;ExcessHet=3.0103;FS=0.664;MLEAC=1;MLEAF=0.500;MQ=57.24;MQRankSum=-29.787;QD=6.15;ReadPosRankSum=-5.357;SOR=0.798;set=HC	GT:AD:AF:DP	0/1:720,183:0.20:903
chr12	11214199	rs200812670	G	A	990.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.027;ClippingRankSum=0.000;DB;DP=652;ExcessHet=3.0103;FS=7.880;MLEAC=1;MLEAF=0.500;MQ=58.04;MQRankSum=-25.424;QD=1.52;ReadPosRankSum=-5.968;SOR=1.761;set=HC	GT:AD:AF:DP	0/1:579,71:0.11:650
chr12	11214212	rs2708380	A	T	5997.77	.	AC=1;AF=0.500;AN=2;DB;DP=592;set=Intersection	GT:AD:AF:DP	0/1:311,278:0.47:589
chr12	11214299	rs376020270	T	C	2770.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.686;ClippingRankSum=0.000;DB;DP=784;ExcessHet=3.0103;FS=13.625;MLEAC=1;MLEAF=0.500;MQ=57.82;MQRankSum=-26.902;QD=3.55;ReadPosRankSum=-6.318;SOR=1.898;set=HC	GT:AD:AF:DP	0/1:668,112:0.14:780
chr12	11214324	.	C	T	4969.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.813;ClippingRankSum=0.000;DP=890;ExcessHet=3.0103;FS=9.816;MLEAC=1;MLEAF=0.500;MQ=57.87;MQRankSum=-26.357;QD=5.62;ReadPosRankSum=-3.924;SOR=1.449;set=HC	GT:AD:AF:DP	0/1:714,171:0.19:885
chr12	11214326	.	G	C	5191.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.768;ClippingRankSum=0.000;DP=885;ExcessHet=3.0103;FS=9.816;MLEAC=1;MLEAF=0.500;MQ=57.90;MQRankSum=-26.251;QD=5.90;ReadPosRankSum=-3.064;SOR=1.505;set=HC	GT:AD:AF:DP	0/1:711,169:0.19:880
chr12	11214330	.	G	A	5804.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.686;ClippingRankSum=0.000;DP=905;ExcessHet=3.0103;FS=8.092;MLEAC=1;MLEAF=0.500;MQ=57.86;MQRankSum=-26.682;QD=6.45;ReadPosRankSum=-2.184;SOR=1.396;set=HC	GT:AD:AF:DP	0/1:722,178:0.20:900
chr12	11214336	rs371367179	A	T	5898.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.500;ClippingRankSum=0.000;DB;DP=912;ExcessHet=3.0103;FS=9.464;MLEAC=1;MLEAF=0.500;MQ=57.85;MQRankSum=-27.302;QD=6.50;ReadPosRankSum=-1.302;SOR=1.400;set=HC	GT:AD:AF:DP	0/1:716,191:0.21:907
chr12	11214351	.	G	C	7109.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.336;ClippingRankSum=0.000;DP=944;ExcessHet=3.0103;FS=5.059;MLEAC=1;MLEAF=0.500;MQ=57.74;MQRankSum=-27.821;QD=7.57;ReadPosRankSum=2.016;SOR=1.104;set=HC	GT:AD:AF:DP	0/1:721,218:0.23:939
chr12	11214360	rs73260771	C	A,T	8033.77	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.691;ClippingRankSum=0.000;DB;DP=944;ExcessHet=3.0103;FS=1.132;MLEAC=1,1;MLEAF=0.500,0.500;MQ=57.55;MQRankSum=-12.455;QD=8.55;ReadPosRankSum=1.293;SOR=0.813;set=HC	GT:AD:AF:DP	1/2:354,234,352:0.25,0.37:940
chr12	11214363	.	T	C	8445.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.907;ClippingRankSum=0.000;DP=947;ExcessHet=3.0103;FS=2.862;MLEAC=1;MLEAF=0.500;MQ=57.41;MQRankSum=-27.767;QD=8.96;ReadPosRankSum=2.889;SOR=0.942;set=HC	GT:AD:AF:DP	0/1:698,245:0.26:943
chr12	11214368	.	T	C	9262.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.306;ClippingRankSum=0.000;DP=962;ExcessHet=3.0103;FS=1.988;MLEAC=1;MLEAF=0.500;MQ=57.33;MQRankSum=-27.166;QD=9.67;ReadPosRankSum=2.366;SOR=0.890;set=HC	GT:AD:AF:DP	0/1:693,265:0.28:958
chr12	11214386	rs200171449	T	G	9647.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.444;ClippingRankSum=0.000;DB;DP=965;ExcessHet=3.0103;FS=1.228;MLEAC=1;MLEAF=0.500;MQ=57.21;MQRankSum=-26.764;QD=10.04;ReadPosRankSum=5.499;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:683,278:0.29:961
chr12	11214392	rs200937291	G	A	9560.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.791;ClippingRankSum=0.000;DB;DP=960;ExcessHet=3.0103;FS=1.216;MLEAC=1;MLEAF=0.500;MQ=57.21;MQRankSum=-26.684;QD=10.00;ReadPosRankSum=6.456;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:678,278:0.29:956
chr12	11214437	rs72477410	T	C	7739.77	.	AC=1;AF=0.500;AN=2;DB;DP=878;set=Intersection	GT:AD:AF:DP	0/1:612,263:0.30:875
chr12	11214455	rs72477411	T	C	6575.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.067;ClippingRankSum=0.000;DB;DP=809;ExcessHet=3.0103;FS=9.987;MLEAC=1;MLEAF=0.500;MQ=57.60;MQRankSum=-23.030;QD=8.16;ReadPosRankSum=-1.707;SOR=1.353;set=HC	GT:AD:AF:DP	0/1:600,206:0.26:806
chr12	11214472	rs200936852	A	G	4376.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.179;ClippingRankSum=0.000;DB;DP=724;ExcessHet=3.0103;FS=19.525;MLEAC=1;MLEAF=0.500;MQ=57.58;MQRankSum=-23.338;QD=6.06;ReadPosRankSum=-2.889;SOR=2.017;set=HC	GT:AD:AF:DP	0/1:575,147:0.20:722
chr12	11214495	.	T	C	2152.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=11.214;ClippingRankSum=0.000;DP=641;ExcessHet=3.0103;FS=32.363;MLEAC=1;MLEAF=0.500;MQ=57.87;MQRankSum=-23.406;QD=3.38;ReadPosRankSum=-2.877;SOR=3.589;set=HC	GT:AD:AF:DP	0/1:549,87:0.14:636
chr12	11214498	.	T	C	1756.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=12.048;ClippingRankSum=0.000;DP=630;ExcessHet=3.0103;FS=44.477;MLEAC=1;MLEAF=0.500;MQ=57.93;MQRankSum=-23.428;QD=2.82;ReadPosRankSum=-2.464;SOR=4.370;set=HC	GT:AD:AF:DP	0/1:545,79:0.13:624
chr12	11214509	.	CA	TG	1048.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.092;ClippingRankSum=0.000;DP=597;ExcessHet=3.0103;FS=45.394;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.25;MQRankSum=-22.919;QD=1.78;ReadPosRankSum=-2.485;SOR=5.600;set=HC	GT:AD:AF:DP	0/1:530,60:0.10:590
chr12	11244001	rs201196515	T	C	91.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.316;ClippingRankSum=0.000;DB;DP=542;ExcessHet=3.0103;FS=25.308;MLEAC=1;MLEAF=0.500;MQ=56.63;MQRankSum=-12.887;QD=0.17;ReadPosRankSum=-3.345;SOR=3.855;set=HC	GT:AD:AF:DP	0/1:499,37:0.07:536
chr12	11244008	rs200479139	AT	GC	183.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.979;ClippingRankSum=0.000;DB;DP=548;ExcessHet=3.0103;FS=19.608;JOINED;MLEAC=1;MLEAF=0.500;MQ=56.51;MQRankSum=-13.208;QD=0.34;ReadPosRankSum=-4.018;SOR=2.946;set=HC	GT:AD:AF:DP	0/1:503,40:0.07:543
chr12	11244015	rs200533679	G	A	382.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.678;ClippingRankSum=0.000;DB;DP=553;ExcessHet=3.0103;FS=22.621;MLEAC=1;MLEAF=0.500;MQ=56.38;MQRankSum=-13.846;QD=0.70;ReadPosRankSum=-5.379;SOR=2.926;set=HC	GT:AD:AF:DP	0/1:504,45:0.08:549
chr12	11244017	rs201618803	T	C	403.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.647;ClippingRankSum=0.000;DB;DP=561;ExcessHet=3.0103;FS=25.253;MLEAC=1;MLEAF=0.500;MQ=56.42;MQRankSum=-14.033;QD=0.72;ReadPosRankSum=-5.234;SOR=3.252;set=HC	GT:AD:AF:DP	0/1:511,46:0.08:557
chr12	11244027	rs202101405	T	C	549.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.887;ClippingRankSum=0.000;DB;DP=565;ExcessHet=3.0103;FS=17.838;MLEAC=1;MLEAF=0.500;MQ=56.42;MQRankSum=-14.224;QD=0.98;ReadPosRankSum=-5.232;SOR=2.594;set=HC	GT:AD:AF:DP	0/1:513,48:0.09:561
chr12	11244036	rs200291442	T	G	668.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.631;ClippingRankSum=0.000;DB;DP=562;ExcessHet=3.0103;FS=8.000;MLEAC=1;MLEAF=0.500;MQ=56.34;MQRankSum=-13.286;QD=1.20;ReadPosRankSum=-5.875;SOR=1.399;set=HC	GT:AD:AF:DP	0/1:502,57:0.10:559
chr12	11244067	.	A	ATT	1655.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.594;ClippingRankSum=0.000;DP=542;ExcessHet=3.0103;FS=1.686;MLEAC=1;MLEAF=0.500;MQ=56.12;MQRankSum=-11.219;QD=3.08;ReadPosRankSum=-0.326;SOR=0.548;set=HC	GT:AD:AF:DP	0/1:465,73:0.14:538
chr12	11244070	.	TCC	T	1706.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.341;ClippingRankSum=0.000;DP=545;ExcessHet=3.0103;FS=0.772;MLEAC=1;MLEAF=0.500;MQ=56.16;MQRankSum=-11.311;QD=3.15;ReadPosRankSum=1.093;SOR=0.548;set=HC	GT:AD:AF:DP	0/1:467,75:0.14:542
chr12	11244091	rs199768488	C	T	2024.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.900;ClippingRankSum=0.000;DB;DP=499;ExcessHet=3.0103;FS=2.546;MLEAC=1;MLEAF=0.500;MQ=56.13;MQRankSum=-11.289;QD=4.07;ReadPosRankSum=5.146;SOR=0.520;set=HC	GT:AD:AF:DP	0/1:418,79:0.16:497
chr12	11244096	.	TG	CA	2300.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.673;ClippingRankSum=0.000;DP=485;ExcessHet=3.0103;FS=2.398;JOINED;MLEAC=1;MLEAF=0.500;MQ=56.19;MQRankSum=-12.134;QD=4.76;ReadPosRankSum=5.060;SOR=0.493;set=HC	GT:AD:AF:DP	0/1:399,84:0.17:483
chr12	11244102	rs199943442	G	C	2434.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.335;ClippingRankSum=0.000;DB;DP=456;ExcessHet=3.0103;FS=2.341;MLEAC=1;MLEAF=0.500;MQ=56.64;MQRankSum=-13.907;QD=5.36;ReadPosRankSum=5.131;SOR=0.504;set=HC	GT:AD:AF:DP	0/1:367,87:0.19:454
chr12	11244149	rs73064964	G	A	2638.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:227,85:0.27:312
chr12	11244166	rs35720106	G	C	5128.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:68,214:0.76:282
chr12	11244169	rs201144595	G	A	2149.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:219,65:0.23:284
chr12	11244190	rs202034865	A	G	1205.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.130;ClippingRankSum=0.000;DB;DP=268;ExcessHet=3.0103;FS=4.912;MLEAC=1;MLEAF=0.500;MQ=58.11;MQRankSum=-12.732;QD=4.55;ReadPosRankSum=0.195;SOR=1.073;set=HC	GT:AD:AF:DP	0/1:221,44:0.17:265
chr12	11244194	rs71443637	T	C	5493.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:41,234:0.85:275
chr12	11244356	rs200257456	A	T	219.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.778;ClippingRankSum=0.000;DB;DP=392;ExcessHet=3.0103;FS=8.559;MLEAC=1;MLEAF=0.500;MQ=58.61;MQRankSum=-16.708;QD=0.58;ReadPosRankSum=-3.504;SOR=0.978;set=HC	GT:AD:AF:DP	0/1:341,41:0.11:382
chr12	11244369	.	GC	AT	2287.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.520;ClippingRankSum=0.000;DP=449;ExcessHet=3.0103;FS=1.486;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.19;MQRankSum=-18.714;QD=5.19;ReadPosRankSum=-4.480;SOR=0.590;set=HC	GT:AD:AF:DP	0/1:364,77:0.17:441
chr12	11244378	rs201455884	C	G	2385.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.893;ClippingRankSum=0.000;DB;DP=486;ExcessHet=3.0103;FS=3.283;MLEAC=1;MLEAF=0.500;MQ=58.03;MQRankSum=-19.814;QD=4.97;ReadPosRankSum=-2.577;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:390,90:0.19:480
chr12	11244390	rs73064966	T	C	1381.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.738;ClippingRankSum=0.000;DB;DP=500;ExcessHet=3.0103;FS=3.302;MLEAC=1;MLEAF=0.500;MQ=58.01;MQRankSum=-19.824;QD=2.81;ReadPosRankSum=0.929;SOR=0.800;set=HC	GT:AD:AF:DP	0/1:399,93:0.19:492
chr12	11244432	rs111982292	A	G	1657.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.728;ClippingRankSum=0.000;DB;DP=474;ExcessHet=3.0103;FS=2.223;MLEAC=1;MLEAF=0.500;MQ=57.80;MQRankSum=-19.360;QD=3.54;ReadPosRankSum=-1.180;SOR=0.921;set=HC	GT:AD:AF:DP	0/1:371,97:0.21:468
chr12	11244470	rs201460452	T	C	229.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.062;ClippingRankSum=0.000;DB;DP=364;ExcessHet=3.0103;FS=2.038;MLEAC=1;MLEAF=0.500;MQ=58.33;MQRankSum=-18.622;QD=0.64;ReadPosRankSum=-5.503;SOR=0.913;set=HC	GT:AD:AF:DP	0/1:316,43:0.12:359
chr12	11244603	rs200999522	T	A	401.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.799;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=33.720;MLEAC=1;MLEAF=0.500;MQ=58.71;MQRankSum=-13.937;QD=1.96;ReadPosRankSum=-0.939;SOR=2.818;set=HC	GT:AD:AF:DP	0/1:177,28:0.14:205
chr12	11244634	rs200893955	G	A	515.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.616;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=21.032;MLEAC=1;MLEAF=0.500;MQ=57.96;MQRankSum=-11.941;QD=3.16;ReadPosRankSum=3.037;SOR=1.914;set=HC	GT:AD:AF:DP	0/1:127,36:0.22:163
chr12	11244646	rs201583586	T	C	886.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.052;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=20.244;MLEAC=1;MLEAF=0.500;MQ=57.58;MQRankSum=-11.838;QD=5.54;ReadPosRankSum=2.742;SOR=1.893;set=HC	GT:AD:AF:DP	0/1:121,39:0.24:160
chr12	11244687	rs113197337	G	C	847.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:131,53:0.29:184
chr12	11244721	rs201281372	G	C	1139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.105;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=4.216;MLEAC=1;MLEAF=0.500;MQ=57.23;MQRankSum=-13.780;QD=5.53;ReadPosRankSum=0.714;SOR=1.087;set=HC	GT:AD:AF:DP	0/1:166,40:0.19:206
chr12	11244723	rs191086711	A	C	1124.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.660;ClippingRankSum=0.000;DB;DP=208;ExcessHet=3.0103;FS=5.270;MLEAC=1;MLEAF=0.500;MQ=57.26;MQRankSum=-13.850;QD=5.41;ReadPosRankSum=0.494;SOR=1.119;set=HC	GT:AD:AF:DP	0/1:168,40:0.19:208
chr12	11244725	rs68157013	C	G	4004.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.460;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=5.275;MLEAC=1;MLEAF=0.500;MQ=57.31;MQRankSum=13.348;QD=19.44;ReadPosRankSum=-0.643;SOR=0.395;set=HC	GT:AD:AF:DP	0/1:40,166:0.81:206
chr12	11244730	rs199862459	AA	GG	899.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.990;ClippingRankSum=0.000;DB;DP=208;ExcessHet=3.0103;FS=3.592;JOINED;MLEAC=1;MLEAF=0.500;MQ=57.58;MQRankSum=-14.328;QD=4.33;ReadPosRankSum=2.585;SOR=1.021;set=HC	GT:AD:AF:DP	0/1:177,31:0.15:208
chr12	11244744	rs201819808	GT	AC	829.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.825;ClippingRankSum=0.000;DB;DP=234;ExcessHet=3.0103;FS=5.736;JOINED;MLEAC=1;MLEAF=0.500;MQ=57.58;MQRankSum=-15.206;QD=3.55;ReadPosRankSum=0.588;SOR=1.216;set=HC	GT:AD:AF:DP	0/1:200,34:0.15:234
chr12	11244793	rs368569282	C	T	3946.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.551;ClippingRankSum=0.000;DB;DP=395;ExcessHet=3.0103;FS=0.844;MLEAC=1;MLEAF=0.500;MQ=56.98;MQRankSum=-15.532;QD=10.09;ReadPosRankSum=-5.442;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:280,111:0.28:391
chr12	11244797	rs199777806	C	A	4078.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.028;ClippingRankSum=0.000;DB;DP=401;ExcessHet=3.0103;FS=2.943;MLEAC=1;MLEAF=0.500;MQ=57.05;MQRankSum=-15.407;QD=10.27;ReadPosRankSum=-4.734;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:282,115:0.29:397
chr12	11244805	.	A	T	4210.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.422;ClippingRankSum=0.000;DP=412;ExcessHet=3.0103;FS=2.686;MLEAC=1;MLEAF=0.500;MQ=57.12;MQRankSum=-15.048;QD=10.32;ReadPosRankSum=-2.872;SOR=0.921;set=HC	GT:AD:AF:DP	0/1:285,123:0.30:408
chr12	11244814	rs377076131	T	C	4106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.612;ClippingRankSum=0.000;DB;DP=398;ExcessHet=3.0103;FS=2.923;MLEAC=1;MLEAF=0.500;MQ=57.24;MQRankSum=-14.593;QD=10.42;ReadPosRankSum=0.812;SOR=0.852;set=HC	GT:AD:AF:DP	0/1:276,118:0.30:394
chr12	11244846	.	A	G	3962.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.312;ClippingRankSum=0.000;DP=332;ExcessHet=3.0103;FS=1.951;MLEAC=1;MLEAF=0.500;MQ=57.19;MQRankSum=-12.584;QD=12.08;ReadPosRankSum=9.182;SOR=0.830;set=HC	GT:AD:AF:DP	0/1:217,111:0.34:328
chr12	11244849	.	T	A	3959.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.479;ClippingRankSum=0.000;DP=333;ExcessHet=3.0103;FS=1.946;MLEAC=1;MLEAF=0.500;MQ=57.20;MQRankSum=-12.609;QD=12.04;ReadPosRankSum=9.247;SOR=0.821;set=HC	GT:AD:AF:DP	0/1:218,111:0.34:329
chr12	11244855	.	T	A	4004.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.337;ClippingRankSum=0.000;DP=310;ExcessHet=3.0103;FS=1.423;MLEAC=1;MLEAF=0.500;MQ=56.98;MQRankSum=-12.021;QD=13.09;ReadPosRankSum=7.873;SOR=0.781;set=HC	GT:AD:AF:DP	0/1:195,111:0.36:306
chr12	11244871	.	G	A	3963.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.069;ClippingRankSum=0.000;DP=269;ExcessHet=3.0103;FS=2.099;MLEAC=1;MLEAF=0.500;MQ=56.51;MQRankSum=-10.873;QD=14.96;ReadPosRankSum=3.996;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:154,111:0.42:265
chr12	11244878	rs369719862	A	G	4017.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.275;ClippingRankSum=0.000;DB;DP=249;ExcessHet=3.0103;FS=2.166;MLEAC=1;MLEAF=0.500;MQ=56.22;MQRankSum=-10.254;QD=16.40;ReadPosRankSum=1.773;SOR=0.835;set=HC	GT:AD:AF:DP	0/1:134,111:0.45:245
chr12	11244918	.	A	AG	1240.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.447;ClippingRankSum=0.000;DP=121;ExcessHet=3.0103;FS=37.293;MLEAC=1;MLEAF=0.500;MQ=57.79;MQRankSum=-5.643;QD=11.82;ReadPosRankSum=-2.146;SOR=4.448;set=HC	GT:AD:AF:DP	0/1:69,36:0.34:105
chr12	11244921	rs112869592	G	T	1249.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.423;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=25.747;MLEAC=1;MLEAF=0.500;MQ=58.36;MQRankSum=-5.844;QD=12.75;ReadPosRankSum=-2.729;SOR=3.918;set=HC	GT:AD:AF:DP	0/1:65,33:0.34:98
chr12	11244926	.	C	G	1089.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.690;ClippingRankSum=0.000;DP=87;ExcessHet=3.0103;FS=17.537;MLEAC=1;MLEAF=0.500;MQ=59.03;MQRankSum=-5.503;QD=12.53;ReadPosRankSum=-2.834;SOR=3.138;set=HC	GT:AD:AF:DP	0/1:60,27:0.31:87
chr12	11244930	.	T	G	792.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.635;ClippingRankSum=0.000;DP=83;ExcessHet=3.0103;FS=14.695;MLEAC=1;MLEAF=0.500;MQ=59.19;MQRankSum=-5.391;QD=9.55;ReadPosRankSum=-2.285;SOR=2.833;set=HC	GT:AD:AF:DP	0/1:60,23:0.28:83
chr12	11244936	.	T	TTG	663.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.956;ClippingRankSum=0.000;DP=78;ExcessHet=3.0103;FS=18.035;MLEAC=1;MLEAF=0.500;MQ=59.14;MQRankSum=-5.704;QD=8.51;ReadPosRankSum=-2.755;SOR=3.912;set=HC	GT:AD:AF:DP	0/1:58,20:0.26:78
chr12	11244938	.	ACG	A	624.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.584;ClippingRankSum=0.000;DP=68;ExcessHet=3.0103;FS=9.719;MLEAC=1;MLEAF=0.500;MQ=59.45;MQRankSum=-3.594;QD=9.19;ReadPosRankSum=-2.107;SOR=2.704;set=HC	GT:AD:AF:DP	0/1:55,13:0.19:68
chr12	11244944	.	AG	A	315.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.271;ClippingRankSum=0.000;DP=59;ExcessHet=3.0103;FS=7.261;MLEAC=1;MLEAF=0.500;MQ=59.42;MQRankSum=-2.793;QD=5.35;ReadPosRankSum=-3.028;SOR=2.257;set=HC	GT:AD:AF:DP	0/1:47,12:0.20:59
chr12	11285754	rs2600357	G	A	1162.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:38,46:0.55:84
chr12	11285802	rs2600356	G	T	3261.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:122,140:0.53:262
chr12	11286088	rs2599404	A	C	10352.77	.	AC=1;AF=0.500;AN=2;DB;DP=1035;set=Intersection	GT:AD:AF:DP	0/1:530,494:0.48:1024
chr12	11286249	rs77777159	T	C	1823.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.813;ClippingRankSum=0.000;DB;DP=863;ExcessHet=3.0103;FS=4.248;MLEAC=1;MLEAF=0.500;MQ=59.04;MQRankSum=-19.020;QD=2.12;ReadPosRankSum=4.535;SOR=1.156;set=HC	GT:AD:AF:DP	0/1:756,103:0.12:859
chr12	11286274	.	C	T	1209.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.029;ClippingRankSum=0.000;DP=945;ExcessHet=3.0103;FS=8.463;MLEAC=1;MLEAF=0.500;MQ=59.26;MQRankSum=-19.899;QD=1.29;ReadPosRankSum=4.680;SOR=1.391;set=HC	GT:AD:AF:DP	0/1:850,90:0.10:940
chr12	11286276	.	G	C	1089.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.281;ClippingRankSum=0.000;DP=943;ExcessHet=3.0103;FS=8.507;MLEAC=1;MLEAF=0.500;MQ=59.26;MQRankSum=-19.887;QD=1.16;ReadPosRankSum=4.174;SOR=1.388;set=HC	GT:AD:AF:DP	0/1:849,90:0.10:939
chr12	11286280	.	G	A	1038.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.074;ClippingRankSum=0.000;DP=959;ExcessHet=3.0103;FS=6.846;MLEAC=1;MLEAF=0.500;MQ=59.28;MQRankSum=-20.770;QD=1.09;ReadPosRankSum=3.604;SOR=1.324;set=HC	GT:AD:AF:DP	0/1:867,88:0.09:955
chr12	11286282	.	G	A	990.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.498;ClippingRankSum=0.000;DP=963;ExcessHet=3.0103;FS=6.784;MLEAC=1;MLEAF=0.500;MQ=59.29;MQRankSum=-20.816;QD=1.03;ReadPosRankSum=3.077;SOR=1.334;set=HC	GT:AD:AF:DP	0/1:871,88:0.09:959
chr12	11286289	.	A	T	897.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.618;ClippingRankSum=0.000;DP=969;ExcessHet=3.0103;FS=6.705;MLEAC=1;MLEAF=0.500;MQ=59.35;MQRankSum=-21.944;QD=0.93;ReadPosRankSum=1.134;SOR=1.289;set=HC	GT:AD:AF:DP	0/1:879,86:0.09:965
chr12	11286309	.	G	C	330.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.570;ClippingRankSum=0.000;DP=974;ExcessHet=3.0103;FS=5.486;MLEAC=1;MLEAF=0.500;MQ=59.41;MQRankSum=-23.092;QD=0.34;ReadPosRankSum=-3.226;SOR=1.391;set=HC	GT:AD:AF:DP	0/1:896,70:0.07:966
chr12	11286702	rs113026132	G	C	398.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.234;ClippingRankSum=0.000;DB;DP=500;ExcessHet=3.0103;FS=20.316;MLEAC=1;MLEAF=0.500;MQ=58.54;MQRankSum=-21.827;QD=0.81;ReadPosRankSum=3.151;SOR=2.821;set=HC	GT:AD:AF:DP	0/1:448,43:0.09:491
chr12	11286713	rs113799622	A	G	494.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.856;ClippingRankSum=0.000;DB;DP=512;ExcessHet=3.0103;FS=25.479;MLEAC=1;MLEAF=0.500;MQ=58.28;MQRankSum=-21.757;QD=0.98;ReadPosRankSum=2.490;SOR=2.730;set=HC	GT:AD:AF:DP	0/1:453,51:0.10:504
chr12	11286736	rs112605675	G	C	2645.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.481;ClippingRankSum=0.000;DB;DP=572;ExcessHet=3.0103;FS=5.924;MLEAC=1;MLEAF=0.500;MQ=56.49;MQRankSum=-19.629;QD=4.67;ReadPosRankSum=-0.338;SOR=0.889;set=HC	GT:AD:AF:DP	0/1:470,97:0.17:567
chr12	11286745	.	AA	GG	2782.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.713;ClippingRankSum=0.000;DP=582;ExcessHet=3.0103;FS=5.858;JOINED;MLEAC=1;MLEAF=0.500;MQ=56.14;MQRankSum=-18.870;QD=4.82;ReadPosRankSum=0.872;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:476,101:0.18:577
chr12	11286760	.	T	C	2982.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.201;ClippingRankSum=0.000;DP=571;ExcessHet=3.0103;FS=2.302;MLEAC=1;MLEAF=0.500;MQ=55.62;MQRankSum=-18.278;QD=5.27;ReadPosRankSum=0.317;SOR=0.517;set=HC	GT:AD:AF:DP	0/1:457,109:0.19:566
chr12	11286790	rs2600355	A	C	3326.77	.	AC=1;AF=0.500;AN=2;DB;DP=561;set=Intersection	GT:AD:AF:DP	0/1:386,171:0.31:557
chr12	11286797	.	A	G	2323.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.997;ClippingRankSum=0.000;DP=556;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.07;MQRankSum=-15.031;QD=4.20;ReadPosRankSum=3.308;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:460,93:0.17:553
chr12	11286807	rs113282241	T	C	2303.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.517;ClippingRankSum=0.000;DB;DP=541;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.63;MQRankSum=-13.439;QD=4.28;ReadPosRankSum=2.087;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:451,87:0.16:538
chr12	11286820	rs111958076	A	T	2084.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.344;ClippingRankSum=0.000;DB;DP=510;ExcessHet=3.0103;FS=1.605;MLEAC=1;MLEAF=0.500;MQ=54.14;MQRankSum=-11.807;QD=4.11;ReadPosRankSum=-0.588;SOR=0.902;set=HC	GT:AD:AF:DP	0/1:426,81:0.16:507
chr12	11338514	rs199861447	GAA	G,GA	2465.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.72;QD=43.26;SOR=5.376;set=HC	GT:AD:AF:DP	1/2:0,40,17:0.70,0.30:57
chr12	11338539	rs1650016	C	A	4174.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr12	11338555	rs1669409	A	T	4981.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr12	11338613	rs1650017	CA	GG	12054.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr12	11338781	rs1669413	C	A	7447.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr12	11338957	rs5020531	A	G	4361.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr12	11338983	rs1650019	T	C	4164.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr12	11339020	rs35969491	T	A	3689.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr12	11418954	rs1896551	A	G	1959.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr12	11421093	rs61463237	T	TGGG	7844.73	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr12	11461292	rs1052808	C	G	4314.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr12	11461706	rs12308381	G	T	658.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.050;ClippingRankSum=0.000;DB;DP=310;ExcessHet=3.0103;FS=7.158;MLEAC=1;MLEAF=0.500;MQ=58.36;MQRankSum=-11.289;QD=2.19;ReadPosRankSum=-1.774;SOR=0.581;set=HC	GT:AD:AF:DP	0/1:242,59:0.20:301
chr12	11461802	rs12829245	G	A	2524.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:167,131:0.44:298
chr12	11461836	rs6488386	T	C	8055.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:1,240:1.00:241
chr12	11462275	rs1834857	A	G	7978.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr12	11506183	rs141582973	G	A	1433.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:75,41:0.35:116
chr12	11506211	rs76504934	A	C	1568.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:98,50:0.34:148
chr12	11506749	.	T	C	279.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.929;ClippingRankSum=0.000;DP=232;ExcessHet=3.0103;FS=3.700;MLEAC=1;MLEAF=0.500;MQ=56.50;MQRankSum=-9.654;QD=1.23;ReadPosRankSum=-2.605;SOR=1.103;set=HC	GT:AD:AF:DP	0/1:199,29:0.13:228
chr12	11506893	rs10845341	C	T	5589.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.72;QD=24.84;SOR=0.795;set=HC	GT:AD:AF:DP	1/1:0,225:1.00:225
chr12	11507468	.	G	A	5130.77	.	AC=1;AF=0.500;AN=2;DP=470;set=Intersection	GT:AD:AF:DP	0/1:220,238:0.52:458
chr12	11546742	rs201044388	T	C	356.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.160;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=2.250;MLEAC=1;MLEAF=0.500;MQ=54.85;MQRankSum=-4.272;QD=1.99;ReadPosRankSum=3.542;SOR=0.502;set=HC	GT:AD:AF:DP	0/1:137,42:0.23:179
chr12	11546781	rs71443675	C	T	1457.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.123;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=1.602;MLEAC=1;MLEAF=0.500;MQ=55.18;MQRankSum=2.002;QD=11.76;ReadPosRankSum=0.112;SOR=0.871;set=HC	GT:AD:AF:DP	0/1:79,45:0.36:124
chr12	11546791	.	G	C	1435.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.177;ClippingRankSum=0.000;DP=128;ExcessHet=3.0103;FS=5.045;MLEAC=1;MLEAF=0.500;MQ=56.02;MQRankSum=2.792;QD=11.77;ReadPosRankSum=1.615;SOR=1.210;set=HC	GT:AD:AF:DP	0/1:79,43:0.35:122
chr12	11803220	rs2856305	A	C	1285.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.18;SOR=3.545;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr12	11903726	rs199664048	CTTTTTTTTTTTTTTT	C	2279.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.505;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=36.822;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=32.11;ReadPosRankSum=0.591;SOR=3.016;set=HC	GT:AD:AF:DP	0/1:12,59:0.83:71
chr12	11904752	rs2856338	T	C	1680.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:24,43:0.64:67
chr12	11904767	rs10845410	C	T	1758.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.179;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=1.842;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.26;ReadPosRankSum=0.654;SOR=0.506;set=HC	GT:AD:AF:DP	0/1:34,45:0.57:79
chr12	11904770	rs2724599	A	T	1780.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.195;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.850;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.26;ReadPosRankSum=0.625;SOR=0.563;set=HC	GT:AD:AF:DP	0/1:34,46:0.57:80
chr12	11904983	rs2724600	A	G	312.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:6,12:0.67:18
chr12	12044494	rs113420500	C	T	1272.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:66,61:0.48:127
chr12	12230938	rs1641721	C	G	2994.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr12	12240199	rs879732	C	T	3158.77	.	AC=1;AF=0.500;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	0/1:175,162:0.48:337
chr12	12247921	rs71435888	AT	A	331.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.566;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=4.073;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=2.761;QD=2.65;ReadPosRankSum=-0.208;SOR=0.385;set=HC	GT:AD:AF:DP	0/1:82,43:0.34:125
chr12	12251711	rs2448031	C	T	1509.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:50,64:0.56:114
chr12	12251761	rs1797646	C	G	2419.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:96,117:0.55:213
chr12	12252078	rs1797647	T	G	878.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:31,36:0.54:67
chr12	12265118	rs55833207	CA	C	1488.73	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.69;QD=22.22;SOR=5.105;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr12	12278468	rs2302684	A	T	267.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:21,14:0.40:35
chr12	12301898	rs2302685	C	T	1113.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:51,51:0.50:102
chr12	12397668	rs10219768	T	A	3739.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.49;SOR=3.365;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr12	12397668	.	TTA	ATT	2947	.	AC=2;AF=1.00;AN=2;BRF=0.32;FR=1.0000;HP=2;HapScore=1;MGOF=8;MMLQ=24;MQ=60.0;NF=9;NR=64;PP=2947;QD=20;SC=TCAAATCGGTTTAAGTGAGCA;SbPval=0.59;Source=Platypus;TC=77;TCF=10;TCR=67;TR=73;WE=12397678;WS=12397658;set=Platypus	GT:AD:AF:DP	1/1:4,73:0.95:77
chr12	12397670	rs10219748	A	T	3739.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.61;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr12	12483275	rs1861676	G	A	6510.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr12	12483318	rs3741801	C	T	2754.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:119,128:0.52:247
chr12	12483713	rs4763282	A	G	10281.77	.	AC=2;AF=1.00;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	1/1:0,356:1.00:356
chr12	12483764	rs17375215	C	T	4439.77	.	AC=1;AF=0.500;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	0/1:210,211:0.50:421
chr12	12483927	rs4763818	G	A	5003.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr12	12496011	rs3741799	G	T	1084.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:56,47:0.46:103
chr12	12510097	rs10772552	C	T	1391.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:48,56:0.54:104
chr12	12588791	rs16908059	A	G	2221.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:92,99:0.52:191
chr12	12588836	rs78877514	C	T	883.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:44,40:0.48:84
chr12	12618690	rs3751262	G	A	2972.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:126,127:0.50:253
chr12	12618715	rs967648	T	C	4281.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr12	12633360	rs78272409	G	C	2420.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:98,106:0.52:204
chr12	12790737	rs10845599	G	A	1138.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:51,49:0.49:100
chr12	12814738	rs4763861	G	A	3694.77	.	AC=1;AF=0.500;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	0/1:222,188:0.46:410
chr12	12814818	rs4763862	C	T	11041.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.56;SOR=0.869;set=HC	GT:AD:AF:DP	1/1:0,294:1.00:294
chr12	12814818	.	CCCAC	TCCAC,TCCAT	1940	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.39;FR=0.5000,0.5000;HP=2;HapScore=2;MGOF=6;MMLQ=24;MQ=60.0;NF=106,59;NR=126,61;PP=1607,1940;QD=7.07660005408;SC=GCATCAAAGACCCACGATGCC;SbPval=0.55;Source=Platypus;TC=233;TCF=107;TCR=126;TR=232,120;WE=12814830;WS=12814808;set=Platypus	GT:AF:DP	0/1:1.00:233
chr12	12814822	rs61745296	C	T	3584.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.725;ClippingRankSum=0.000;DB;DP=303;ExcessHet=3.0103;FS=1.394;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.15;ReadPosRankSum=0.810;SOR=0.603;set=HC	GT:AD:AF:DP	0/1:132,163:0.55:295
chr12	12878765	rs66561220	T	C	1380.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:44,59:0.57:103
chr12	12879057	rs34323	G	A	1166.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:45,46:0.51:91
chr12	12879254	rs7956514	T	G	2133.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:64,98:0.60:162
chr12	12938793	rs7297140	G	A	1020.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:36,43:0.54:79
chr12	12966967	rs7978823	A	G	3188.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:165,149:0.47:314
chr12	12967127	rs1051374	C	T	6247.77	.	AC=1;AF=0.500;AN=2;DB;DP=619;set=Intersection	GT:AD:AF:DP	0/1:317,297:0.48:614
chr12	12967264	rs3741826	C	G	1220.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:46,50:0.52:96
chr12	12977400	rs1010878	G	A	1018.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:44,47:0.52:91
chr12	12980326	rs12306594	T	A	6117.77	.	AC=1;AF=0.500;AN=2;DB;DP=579;set=Intersection	GT:AD:AF:DP	0/1:278,294:0.51:572
chr12	13028653	rs10845659	A	G	6030.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:2,228:0.99:230
chr12	13061294	rs2075288	C	T	6379.77	.	AC=1;AF=0.500;AN=2;DB;DP=573;set=Intersection	GT:AD:AF:DP	0/1:275,290:0.51:565
chr12	13101454	rs7294444	G	T	3391.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr12	13102605	rs4630382	G	A	6999.77	.	AC=1;AF=0.500;AN=2;DB;DP=622;set=Intersection	GT:AD:AF:DP	0/1:282,332:0.54:614
chr12	13136623	rs735689	T	C	15828.77	.	AC=2;AF=1.00;AN=2;DB;DP=601;set=Intersection	GT:AD:AF:DP	1/1:2,589:1.00:591
chr12	13142174	rs850918	C	G	2852.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr12	13153126	.	C	CGGCGGCAGGGCGGCAG	6217.73	.	AC=2;AF=1.00;AN=2;DP=599;set=Intersection	GT:AD:AF:DP	1/1:5,211:0.98:216
chr12	13153388	.	G	GGCAGCAGTCCAGCAGTGCAGCAGT	3208.73	.	AC=2;AF=1.00;AN=2;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr12	13153773	rs1291364	T	C	1717.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr12	13154077	rs67498669	C	T	415.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr12	13154105	rs9919709	A	T	505.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr12	13154123	rs61912779	G	C	518.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr12	13154582	rs59113920	CG	C	5866.73	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr12	13154790	rs1291363	G	C	17355.77	.	AC=2;AF=1.00;AN=2;DB;DP=622;set=Intersection	GT:AD:AF:DP	1/1:2,607:1.00:609
chr12	13154911	rs1291362	A	G	22600.77	.	AC=2;AF=1.00;AN=2;DB;DP=867;set=Intersection	GT:AD:AF:DP	1/1:5,849:0.99:854
chr12	13155166	rs1291361	G	T	13604.77	.	AC=2;AF=1.00;AN=2;DB;DP=494;set=Intersection	GT:AD:AF:DP	1/1:1,480:1.00:481
chr12	13211212	rs6488582	G	A	2201.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr12	13214537	rs3741818	A	G	3487.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr12	13215685	rs2200498	C	A	2053.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr12	13221606	rs1386005	T	C	13612.77	.	AC=2;AF=1.00;AN=2;DB;DP=505;set=Intersection	GT:AD:AF:DP	1/1:0,497:1.00:497
chr12	13248445	rs2291396	C	A	2583.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:153,127:0.45:280
chr12	13294280	rs7978768	C	A	7722.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr12	13369196	rs8885	C	T	379.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:24,16:0.40:40
chr12	13527882	rs12306769	G	A	4852.77	.	AC=1;AF=0.500;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	0/1:198,229:0.54:427
chr12	13716638	rs1806191	G	A	5184.77	.	AC=1;AF=0.500;AN=2;DB;DP=513;set=Intersection	GT:AD:AF:DP	0/1:267,241:0.47:508
chr12	13717508	rs1806201	G	A	6280.77	.	AC=1;AF=0.500;AN=2;DB;DP=566;set=Intersection	GT:AD:AF:DP	0/1:273,284:0.51:557
chr12	13720043	rs3026160	G	A	4133.77	.	AC=1;AF=0.500;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	0/1:214,205:0.49:419
chr12	13720272	rs4764010	A	G	2023.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr12	13764774	rs1805482	G	A	4872.77	.	AC=1;AF=0.500;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	0/1:214,237:0.53:451
chr12	13768354	rs1468845	C	T	7965.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr12	13769664	rs1805199	T	C	2958.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr12	14018777	rs7301328	G	C	1563.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:114,74:0.39:188
chr12	14579463	rs200611526	CT	C	124.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.541;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=1.323;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.351;QD=1.86;ReadPosRankSum=1.788;SOR=0.450;set=HC	GT:AD:AF:DP	0/1:44,23:0.34:67
chr12	14587301	rs3213764	A	G	2362.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr12	14590981	rs10734876	T	C	1082.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr12	14599904	.	C	CTT	805.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.875;ClippingRankSum=0.000;DP=56;ExcessHet=3.0103;FS=1.619;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=0.678;QD=14.92;ReadPosRankSum=2.466;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:8,46:0.85:54
chr12	14628705	rs7298275	A	G	1119.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr12	14628773	rs7313259	C	T	3128.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr12	14634392	rs140044044	C	CAGTT	862.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr12	14659849	rs145592446	G	C	2139.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:116,99:0.46:215
chr12	14688644	rs7957558	C	T	9236.77	.	AC=2;AF=1.00;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	1/1:0,349:1.00:349
chr12	14689449	rs35754761	T	G	1376.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:119,69:0.37:188
chr12	14694993	rs1862014	G	C	1079.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr12	14720366	rs10846023	C	T	362.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:11,15:0.58:26
chr12	14720554	rs147342083	GGCA	G,TGCA	3880.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=207;set=Intersection	GT:AF:DP	1/2:0.68,0.31:180
chr12	14720583	rs7954623	T	C	4823.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr12	14769468	rs1558795	G	A	2075.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr12	14774849	rs7302418	T	A	3016.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr12	14775214	rs2287538	T	C	432.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:9,15:0.62:24
chr12	14781503	rs4764105	A	T	608.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr12	14781678	rs3217210	G	GA	1897.73	.	AC=1;AF=0.500;AN=2;DB;DP=184;MQ=60.06;set=Intersection	GT:AD:AF:DP	0/1:73,105:0.59:178
chr12	14794062	rs10772800	G	A	3331.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr12	14804994	rs7313027	G	C	2966.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr12	14822855	rs7314345	G	A	1529.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr12	14827463	rs3217157	AATC	A	22402.73	.	AC=2;AF=1.00;AN=2;DB;DP=512;set=Intersection	GT:AD:AF:DP	1/1:0,501:1.00:501
chr12	14829893	rs1420635	A	C	8802.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,325:1.00:325
chr12	14832830	rs11336448	CT	C	537.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.363;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=17.35;ReadPosRankSum=2.309;SOR=5.353;set=HC	GT:AD:AF:DP	1/1:1,30:0.97:31
chr12	14834421	rs56944147	GA	G	13799.73	.	AC=2;AF=1.00;AN=2;DB;DP=551;MQ=60.04;set=Intersection	GT:AD:AF:DP	1/1:2,513:1.00:515
chr12	14834427	rs58911033	G	T	22952.77	.	AC=2;AF=1.00;AN=2;DB;DP=525;MQ=60.04;set=Intersection	GT:AD:AF:DP	1/1:0,521:1.00:521
chr12	14923522	rs12818627	T	C	746.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:12,29:0.71:41
chr12	14924028	rs16910259	A	G	8298.77	.	AC=1;AF=0.500;AN=2;DB;DP=794;set=Intersection	GT:AD:AF:DP	0/1:396,395:0.50:791
chr12	14928195	rs66661591	T	C	1294.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:53,57:0.52:110
chr12	14975721	rs11610238	C	T	205.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chr12	14976553	rs17761825	G	C	1927.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:89,86:0.49:175
chr12	15034996	rs2430735	T	A	4847.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:1,172:0.99:173
chr12	15067511	rs148149515	T	TGTGTGC	1780.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.554;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=8.151;MLEAC=1;MLEAF=0.500;MQ=60.89;MQRankSum=2.711;QD=13.59;ReadPosRankSum=1.447;SOR=1.483;set=HC	GT:AD:AF:DP	0/1:71,60:0.46:131
chr12	15073831	rs2445382	G	C	2057.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:82,93:0.53:175
chr12	15081897	rs2445371	A	C	17060.77	.	AC=2;AF=1.00;AN=2;DB;DP=505;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.12;SOR=0.820;set=HC	GT:AD:AF:DP	1/1:0,500:1.00:500
chr12	15081897	.	AG	CA,CG	2762	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.48;FR=0.5000,0.5000;HP=1;HapScore=1;MGOF=4;MMLQ=26;MQ=60.0;NF=58,141;NR=67,167;PP=1641,2762;QD=13.5557429989;SC=CCAGCTGGCAAGTCTCCTTCA;SbPval=0.47;Source=Platypus;TC=315;TCF=143;TCR=172;TR=125,308;WE=15081906;WS=15081887;set=Platypus	GT:AF:DP	0/1:0.40:315
chr12	15081898	rs11056243	G	A	4168.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.205;ClippingRankSum=0.000;DB;DP=502;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.39;ReadPosRankSum=0.793;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:281,216:0.43:497
chr12	15082004	rs11056244	T	A	1295.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:72,55:0.43:127
chr12	15090762	rs3748296	G	C	335.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:34,16:0.32:50
chr12	15090837	rs3748297	A	G	1037.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:74,52:0.41:126
chr12	15091221	rs11432737	A	AT	11247.73	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr12	15095558	rs4703	C	G	1889.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:108,93:0.46:201
chr12	15095707	rs10772822	T	C	871.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:30,39:0.57:69
chr12	15100684	rs7979291	C	T	203.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chr12	15101072	.	T	G	372	.	AC=1;AF=0.500;AN=2;BRF=0.07;FR=0.5000;HP=1;HapScore=2;MGOF=51;MMLQ=24;MQ=59.63;NF=1;NR=19;PP=372;QD=20.3385606274;SC=ACACACACACTTAATGCCTGA;SbPval=0.76;Source=Platypus;TC=42;TCF=3;TCR=39;TR=20;WE=15101080;WS=15101062;set=Platypus	GT:AD:AF:DP	1/0:22,20:0.48:42
chr12	15103605	rs2430711	A	G	6092.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr12	15131995	rs2233623	C	A	561.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr12	15273932	rs2247574	C	T	9179.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.24;SOR=1.407;set=HC	GT:AD:AF:DP	1/1:0,337:1.00:337
chr12	15273957	rs2247568	A	G	11976.77	.	AC=2;AF=1.00;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	1/1:0,450:1.00:450
chr12	15652330	rs4764197	T	C	780.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:31,33:0.52:64
chr12	15652636	rs3838355	AAT	A	849.73	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:28,26:0.48:54
chr12	15656832	rs4764199	T	A	4346.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr12	15661441	rs888163	A	G	1517.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr12	15702202	rs10541885	AAT	A	279.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.444;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.96;ReadPosRankSum=0.999;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:121,22:0.15:143
chr12	15731724	rs5796639	T	TG	8832.73	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr12	15731744	rs1024843	C	T	8525.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr12	15733669	rs3748299	G	A	3843.77	.	AC=1;AF=0.500;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	0/1:190,183:0.49:373
chr12	15742313	rs34222753	GA	G	1287.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.499;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=2.462;MLEAC=1;MLEAF=0.500;MQ=60.67;MQRankSum=1.211;QD=12.62;ReadPosRankSum=2.331;SOR=1.162;set=HC	GT:AD:AF:DP	0/1:15,87:0.85:102
chr12	15748020	rs1558787	C	T	3663.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr12	15776223	.	TA	T	321.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.255;ClippingRankSum=0.000;DP=393;ExcessHet=3.0103;FS=3.051;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.873;QD=1.05;ReadPosRankSum=0.712;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:234,71:0.23:305
chr12	15777486	rs4623959	T	C	335.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr12	15803992	rs4237955	T	C	4993.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr12	15818880	rs4363660	T	A	1298.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr12	15822229	rs4237957	A	C	3038.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr12	15822244	rs4237958	T	C	3844.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr12	16036261	rs10734889	C	G	2023.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr12	16050808	rs10772879	T	A	838.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr12	16055926	rs71042275	G	GT	1494.73	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr12	16064277	rs185593842	G	A	741.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.741;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=8.291;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.01;ReadPosRankSum=-0.653;SOR=0.164;set=HC	GT:AD:AF:DP	0/1:19,38:0.67:57
chr12	16109673	rs2306181	T	G	201.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:14,11:0.44:25
chr12	16185463	rs57961487	CTT	C	4513.73	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr12	16369828	rs1671511	A	T	9841.77	.	AC=2;AF=1.00;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	1/1:0,370:1.00:370
chr12	16377514	rs61915927	T	C	1586.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:53,76:0.59:129
chr12	16392545	rs11056836	C	T	903.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:25,37:0.60:62
chr12	16392788	rs139219535	T	C	1027.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:62,49:0.44:111
chr12	16397677	rs1527014	G	A	2036.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:106,104:0.50:210
chr12	16397746	rs1852451	C	T	4464.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr12	16430284	rs1671487	G	A	15570.77	.	AC=2;AF=1.00;AN=2;DB;DP=591;set=Intersection	GT:AD:AF:DP	1/1:0,580:1.00:580
chr12	16510395	rs2075239	T	G	1465.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:28,38:0.58:66
chr12	16510418	rs2075240	A	G	1930.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:34,56:0.62:90
chr12	16516994	rs11875	G	A	2553.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:121,112:0.48:233
chr12	16529036	rs71054810	AT	A	557.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.648;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.64;ReadPosRankSum=1.220;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:36,37:0.51:73
chr12	16529269	rs6488842	C	T	186.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr12	16743165	rs2058798	A	G	823.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr12	16743217	rs2058799	A	G	207.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr12	17142520	rs35949588	C	T	3122.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr12	17142546	rs7955087	T	C	2040.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr12	18234097	rs941047	T	C	968.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:58,43:0.43:101
chr12	18234256	rs941048	T	C	5690.77	.	AC=1;AF=0.500;AN=2;DB;DP=574;set=Intersection	GT:AD:AF:DP	0/1:292,270:0.48:562
chr12	18234422	rs11043839	C	A	4029.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.611;ClippingRankSum=0.000;DB;DP=415;ExcessHet=3.0103;FS=1.127;MLEAC=1;MLEAF=0.500;MQ=60.83;MQRankSum=-5.400;QD=9.85;ReadPosRankSum=0.553;SOR=0.817;set=HC	GT:AD:AF:DP	0/1:222,187:0.46:409
chr12	18234461	rs3054570	TAA	T	2350.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.695;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=13.339;MLEAC=1;MLEAF=0.500;MQ=62.19;MQRankSum=6.439;QD=17.28;ReadPosRankSum=-0.828;SOR=2.097;set=HC	GT:AD:AF:DP	0/1:60,76:0.56:136
chr12	18234476	.	AACAG	CACAG	696	.	AC=1;AF=0.500;AN=2;BRF=0.43;FR=0.5000,0.5000;HP=15;HapScore=2;MGOF=27;MMLQ=28;MQ=62.09;NF=1,7;NR=96,36;PP=696,662;QD=7.20618556701;SC=AAAAAAAAAAAACAGATTTAT;SbPval=0.51;Source=Platypus;TC=135;TCF=1;TCR=134;TR=97,43;WE=18234488;WS=18234451;set=Platypus	GT:AD:AF:DP	0/1:130,43:0.25:173
chr12	18234476	.	AACAG	A	696	.	AC=1;AF=0.500;AN=2;BRF=0.43;FR=0.5000,0.5000;HP=15;HapScore=2;MGOF=27;MMLQ=28;MQ=62.09;NF=1,7;NR=96,36;PP=696,662;QD=7.20618556701;SC=AAAAAAAAAAAACAGATTTAT;SbPval=0.51;Source=Platypus;TC=135;TCF=1;TCR=134;TR=97,43;WE=18234488;WS=18234451;set=Platypus	GT:AD:AF:DP	0/1:38,97:0.72:135
chr12	18234478	.	CAG	C	2862.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.774;ClippingRankSum=0.000;DP=142;ExcessHet=3.0103;FS=10.945;MLEAC=1;MLEAF=0.500;MQ=62.76;MQRankSum=6.216;QD=20.74;ReadPosRankSum=-0.326;SOR=1.640;set=HC	GT:AD:AF:DP	0/1:60,78:0.57:138
chr12	18237688	rs6486881	C	A	4493.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr12	18238782	.	CT	C	300.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.490;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;FS=3.682;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.57;ReadPosRankSum=-0.077;SOR=1.561;set=HC	GT:AD:AF:DP	0/1:13,13:0.50:26
chr12	18238788	.	T	C	306.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.629;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=3.565;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.36;ReadPosRankSum=-0.097;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:14,13:0.48:27
chr12	18238804	rs112896269	GAGCCAC	G	822.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.14;SOR=1.721;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr12	18243282	rs12303456	G	C	2003.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:58,82:0.59:140
chr12	18435398	rs35277916	GCCC	G	13118.73	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:1,295:1.00:296
chr12	18435452	rs11044004	C	T	5936.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:2,200:0.99:202
chr12	18473729	rs11044026	T	C	159.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:17,9:0.35:26
chr12	18491597	.	C	CTGTG,CTG	291.70	.	AC=1,0;AF=0.500,0.00;AN=2;DP=21;set=Intersection	GT:AF:DP	0/1:0.83:12
chr12	18496400	.	A	AAC	122	.	AC=1;AF=0.500;AN=2;BRF=0.39;FR=0.5000;HP=1;HapScore=3;MGOF=15;MMLQ=24;MQ=60.0;NF=0;NR=7;PP=122;QD=18.0;SC=GGTAACACACAACACACACAC;SbPval=1.0;Source=Platypus;TC=12;TCF=2;TCR=10;TR=7;WE=18496409;WS=18496390;set=Platypus	GT:AD:AF:DP	1/0:5,7:0.58:12
chr12	18499777	rs10770357	C	G	14708.77	.	AC=2;AF=1.00;AN=2;DB;DP=557;set=Intersection	GT:AD:AF:DP	1/1:0,542:1.00:542
chr12	18641326	rs7137852	T	C	2662.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr12	18720057	rs11044189	T	C	452.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:24,23:0.49:47
chr12	18747387	rs12827507	A	G	554.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:27,26:0.49:53
chr12	18747528	rs11044211	C	T	1127.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:41,54:0.57:95
chr12	18762450	rs2277328	A	C	2947.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:171,153:0.47:324
chr12	18801017	rs501379	T	C	1358.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr12	18840911	rs2306798	A	G	424.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:10,17:0.63:27
chr12	18841115	rs10505830	G	A	1148.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:62,58:0.48:120
chr12	18854540	rs11279217	ATCCTCCTCC	A,ATCCTCCTCCTCCTCC	3830.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.353;ClippingRankSum=0.000;DB;DP=285;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.11;MQRankSum=0.387;QD=36.83;ReadPosRankSum=0.766;SOR=0.678;set=HC	GT:AD:AF:DP	1/2:5,72,27:0.69,0.26:104
chr12	18872325	rs10841078	G	C	59.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.955;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.99;ReadPosRankSum=-0.485;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:15,5:0.25:20
chr12	18889517	rs144525318	A	AAATTTGAG	2887.73	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr12	18890472	rs5796766	GT	G	2820.73	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr12	19282670	rs28512290	C	T	5372.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr12	19283135	rs61913270	C	A	4359.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr12	19406863	rs6486942	C	T	5186.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr12	19418588	rs6486945	G	A	184.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr12	19418874	rs7316780	C	T	1301.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr12	19428009	rs2279537	T	A	1826.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr12	19512563	rs11044515	G	A	3681.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr12	19522484	rs113006194	A	AAAAG	1721.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr12	19592600	.	GGGAGGA	G,GGGA	2793.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.48;QD=39.91;SOR=1.418;set=HC	GT:AD:AF:DP	1/2:0,8,62:0.11,0.89:70
chr12	19626311	.	AT	A	3959.73	.	AC=2;AF=1.00;AN=2;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.23;QD=44.00;SOR=1.105;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr12	19626315	.	ATTT	A	3820.73	.	AC=2;AF=1.00;AN=2;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.23;QD=42.93;SOR=1.342;set=HC	GT:AD:AF:DP	1/1:0,89:1.00:89
chr12	19626322	rs11044583	T	A	2242.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.118;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.24;MQRankSum=0.382;QD=37.38;ReadPosRankSum=-0.238;SOR=0.814;set=HC	GT:AD:AF:DP	1/1:3,57:0.95:60
chr12	19626326	rs12370241	T	A	3977.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.25;QD=46.80;SOR=1.101;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr12	19626330	rs12818887	T	A	938.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.324;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=2.284;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=-1.899;QD=15.14;ReadPosRankSum=0.059;SOR=0.432;set=HC	GT:AD:AF:DP	0/1:22,40:0.65:62
chr12	19646943	rs66556640	CTGGTGTATTTCA	C	1963.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr12	19671152	rs57671944	C	CT	365.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.436;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=9.432;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.14;ReadPosRankSum=-1.746;SOR=0.039;set=HC	GT:AD:AF:DP	0/1:20,20:0.50:40
chr12	19873411	rs4301848	G	T	962.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr12	19873497	rs4369485	A	G	4049.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr12	20522114	rs138187101	A	AGCGT	455.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.596;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=1.382;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.76;ReadPosRankSum=-0.608;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:34,18:0.35:52
chr12	20709733	rs4762972	G	A	11122.77	.	AC=2;AF=1.00;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	1/1:0,400:1.00:400
chr12	20766559	rs10743380	C	T	15098.77	.	AC=2;AF=1.00;AN=2;DB;DP=559;set=Intersection	GT:AD:AF:DP	1/1:0,556:1.00:556
chr12	20766685	rs7308381	G	C	3174.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr12	20769026	rs68125264	TTAGA	T	772.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr12	20774464	rs10743381	A	G	6456.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr12	20774539	rs10734705	A	G	1845.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr12	20783099	rs7304499	A	C	1009.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:24,41:0.63:65
chr12	20786787	rs4265636	T	C	4940.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr12	20786807	rs3858661	T	G	1324.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.097;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=3.435;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.96;ReadPosRankSum=0.588;SOR=1.034;set=HC	GT:AD:AF:DP	0/1:74,59:0.44:133
chr12	20786813	rs78782960	G	A	1475.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.172;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=1.529;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.62;ReadPosRankSum=0.181;SOR=0.549;set=HC	GT:AD:AF:DP	0/1:59,68:0.54:127
chr12	20786822	rs10841580	C	T	1211.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.365;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=1.608;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.36;ReadPosRankSum=-0.210;SOR=0.898;set=HC	GT:AD:AF:DP	0/1:61,56:0.48:117
chr12	20786841	rs10743382	T	C	2191.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr12	20786880	rs10841581	C	T	540.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:21,22:0.51:43
chr12	20787783	rs151261214	GC	G	1126.73	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:46,44:0.49:90
chr12	20788137	rs11045352	G	A	493.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:25,22:0.47:47
chr12	20801855	rs9284155	C	T	4541.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.91;SOR=1.806;set=HC	GT:AD:AF:DP	1/1:0,138:1.00:138
chr12	20801861	rs71039963	C	CTTT	474.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.021;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.000;QD=8.33;ReadPosRankSum=0.858;SOR=0.460;set=HC	GT:AD:AF:DP	0/1:33,24:0.42:57
chr12	20803323	rs9804769	A	C	518.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr12	20803549	rs10743384	T	C	1840.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:53,84:0.61:137
chr12	20864356	rs7963279	C	T	14994.77	.	AC=2;AF=1.00;AN=2;DB;DP=578;set=Intersection	GT:AD:AF:DP	1/1:0,574:1.00:574
chr12	20864496	rs58482708	A	G	1520.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:48,65:0.58:113
chr12	20868247	rs34288910	C	T	2335.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:87,100:0.53:187
chr12	20870033	rs3983551	CTTTT	C	3329.73	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:73,87:0.54:160
chr12	20870265	rs2417862	T	C	859.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr12	20874599	rs75694248	TAA	T,TA	1198.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=3.531;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=11.652;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.37;MQRankSum=0.337;QD=20.67;ReadPosRankSum=-0.133;SOR=6.666;set=HC	GT:AD:AF:DP	1/2:2,31,25:0.53,0.43:58
chr12	20874990	rs11045408	C	G	1029.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:54,48:0.47:102
chr12	20875983	rs35653399	G	T	931.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:36,38:0.51:74
chr12	20876227	rs12820079	G	C	7772.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr12	20893052	rs2037154	C	A	1944.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:78,84:0.52:162
chr12	20968644	.	AATATTCACTTGGTATCTG	A	642.73	.	AC=1;AF=0.500;AN=2;DP=26;set=Intersection	GT:AD:AF:DP	0/1:10,16:0.62:26
chr12	20968665	rs4149158	GTTTA	G	633.73	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:13,17:0.57:30
chr12	20968828	rs10734710	C	T	1144.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr12	21011480	rs4149117	T	G	7766.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr12	21011581	rs4149118	G	A	2150.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:64,96:0.60:160
chr12	21013948	rs3764009	C	T	1264.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr12	21014139	rs3764008	C	G	2124.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr12	21014163	rs3764007	T	A	1426.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr12	21014178	rs7306033	A	G	555.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:14,21:0.60:35
chr12	21015610	rs1036261	A	G	5069.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr12	21015760	rs7311358	G	A	5612.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr12	21028208	rs60140950	G	C	1670.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:93,78:0.46:171
chr12	21031020	rs2417938	A	G	382.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr12	21032242	rs4149142	T	G	248.78	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr12	21036411	rs2053098	A	G	2880.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr12	21051489	rs4149153	C	T	661.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr12	21054369	rs3764006	G	A	1568.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr12	21054664	rs7970514	C	T	490.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:21,24:0.53:45
chr12	21054918	rs2082518	T	C	895.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:42,42:0.50:84
chr12	21065235	rs142241896	TTTTATTTATTTATTTA	T	1871.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.23;QD=42.54;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr12	21065365	rs10841706	C	A	2485.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:2,102:0.98:104
chr12	21065429	.	ATT	A,AT	724.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.498;ClippingRankSum=0.000;DP=65;ExcessHet=3.0103;FS=2.658;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=16.11;ReadPosRankSum=-0.228;SOR=0.146;set=HC	GT:AD:AF:DP	1/2:3,20,22:0.44,0.49:45
chr12	21168758	rs34168692	T	TA	382.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr12	21174496	rs12824121	C	T	726.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:41,38:0.48:79
chr12	21176135	rs1546308	T	C	11194.77	.	AC=2;AF=1.00;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	1/1:0,412:1.00:412
chr12	21176247	rs1546307	A	G	5760.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr12	21196424	rs11045676	T	A	2086.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:106,100:0.49:206
chr12	21200089	rs11045681	A	G	1072.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:44,51:0.54:95
chr12	21201544	.	GTA	G	147	.	AC=1;AF=0.500;AN=2;BRF=0.31;FR=0.5000;HP=2;HapScore=2;MGOF=59;MMLQ=26;MQ=58.84;NF=6;NR=2;PP=147;QD=21.375;SC=ATTTAAATGTGTATATATATT;SbPval=0.62;Source=Platypus;TC=8;TCF=6;TCR=2;TR=8;WE=21201553;WS=21201534;set=Platypus	GT:AD:AF:DP	0/1:0,8:1.00:8
chr12	21201663	rs11045689	G	A	661.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:35,31:0.47:66
chr12	21207389	rs11045699	T	C	350.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:11,15:0.58:26
chr12	21220349	rs1910163	A	T	557.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:68,32:0.32:100
chr12	21317668	rs10444413	T	C	50.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:16,4:0.20:20
chr12	21317791	rs4149032	C	T	918.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:49,46:0.48:95
chr12	21317810	rs4149033	A	G	2558.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr12	21317922	rs4149034	G	A	1250.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:78,65:0.45:143
chr12	21327652	rs34728625	T	TA	580.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.712;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=3.872;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.65;ReadPosRankSum=-0.976;SOR=0.377;set=HC	GT:AD:AF:DP	0/1:78,47:0.38:125
chr12	21329738	rs2306283	A	G	783.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:69,44:0.39:113
chr12	21329761	rs11045818	G	A	972.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:82,53:0.39:135
chr12	21329813	rs11045819	C	A	1073.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:74,58:0.44:132
chr12	21331389	rs61760242	TTACTTG	T	232.73	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr12	21331599	rs4149057	T	C	3537.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr12	21331625	rs2291075	C	T	961.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:77,50:0.39:127
chr12	21331987	rs2291076	C	T	1298.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:61,65:0.52:126
chr12	21375061	rs11045873	T	A	2807.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.29;SOR=1.430;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr12	21375061	.	TTG	ATC	2289	.	AC=2;AF=1.00;AN=2;BRF=0.34;FR=1.0000;HP=1;HapScore=1;MGOF=0;MMLQ=24;MQ=60.0;NF=36;NR=18;PP=2289;QD=43.3790347197;SC=ATTATTATTATTGCTCAAGTG;SbPval=0.58;Source=Platypus;TC=56;TCF=37;TCR=19;TR=54;WE=21375071;WS=21375051;set=Platypus	GT:AD:AF:DP	1/1:2,54:0.96:56
chr12	21375063	rs11045874	G	C	2807.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.87;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr12	21427608	rs3736080	G	T	447.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:21,20:0.49:41
chr12	21450250	rs4148999	C	G	2157.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:91,93:0.51:184
chr12	21457514	rs3833795	TA	T	1220.73	.	AC=1;AF=0.500;AN=2;DB;DP=190;MQ=60.06;set=Intersection	GT:AD:AF:DP	0/1:79,82:0.51:161
chr12	21467666	rs10841789	A	C	841.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:33,31:0.48:64
chr12	21487544	rs10841795	A	G	1938.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:122,98:0.45:220
chr12	21526472	rs12306121	A	G	1942.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:76,80:0.51:156
chr12	21526651	rs12319824	G	A	2440.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:136,120:0.47:256
chr12	21529150	rs17680787	G	T	667.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:48,35:0.42:83
chr12	21529212	rs12305367	T	C	1220.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:97,64:0.40:161
chr12	21531437	rs5484	C	T	671.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:37,28:0.43:65
chr12	21590621	rs2058464	T	C	668.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:30,26:0.46:56
chr12	21590788	rs2110165	C	A	4061.77	.	AC=1;AF=0.500;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	0/1:176,201:0.53:377
chr12	21593404	rs4762702	G	C	1634.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr12	21602792	rs71537701	CTTTTTTTTTTTT	C	605.73	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:10,16:0.62:26
chr12	21608891	rs2302500	T	C	578.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:24,28:0.54:52
chr12	21609127	rs4367993	T	C	1812.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr12	21609222	rs4388943	G	T	252.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:5,10:0.67:15
chr12	21609684	rs55861860	A	G	323.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:33,15:0.31:48
chr12	21609733	rs7964140	A	G	1372.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:72,63:0.47:135
chr12	21609761	rs34335650	C	CAACT	1911.73	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:113,92:0.45:205
chr12	21609907	rs7964568	G	A	2047.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:65,91:0.58:156
chr12	21609936	rs68030467	A	G	1163.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:36,51:0.59:87
chr12	21614141	rs151311552	CAATTT	C	1206.73	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:20,32:0.62:52
chr12	21614256	rs7297084	G	A	138.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr12	21615207	rs3213210	A	G	137.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:16,7:0.30:23
chr12	21615664	rs3782660	T	C	686.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:35,30:0.46:65
chr12	21615917	rs34595378	C	CAG	2964.73	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:101,81:0.45:182
chr12	21615935	rs10841819	A	T	577.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.128;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=5.110;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.81;ReadPosRankSum=1.726;SOR=1.247;set=HC	GT:AD:AF:DP	0/1:75,45:0.38:120
chr12	21621737	rs61926324	A	G	709.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:25,31:0.55:56
chr12	21623122	rs13035	T	G	2093.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:106,102:0.49:208
chr12	21623284	.	C	CAAA	876.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.245;ClippingRankSum=0.000;DP=156;ExcessHet=3.0103;FS=8.996;MLEAC=1;MLEAF=0.500;MQ=50.92;MQRankSum=-3.367;QD=6.64;ReadPosRankSum=0.510;SOR=1.296;set=HC	GT:AD:AF:DP	0/1:87,45:0.34:132
chr12	21624308	rs56736899	TA	T	1113.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:63,73:0.54:136
chr12	21624309	rs11046076	A	T	774.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:77,58:0.43:135
chr12	21626324	rs917852	A	C	1893.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.09;SOR=4.125;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr12	21626330	rs917853	C	A	2115.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.32;SOR=4.493;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr12	21627672	rs35159698	C	G	628.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:24,23:0.49:47
chr12	21627745	rs2159943	A	G	1427.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:95,73:0.43:168
chr12	21628320	rs10841831	C	T	1777.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:41,44:0.52:85
chr12	21628336	rs10841832	G	A	1970.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:45,56:0.55:101
chr12	21628791	rs3752648	T	C	2661.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:89,113:0.56:202
chr12	21628812	rs10160843	G	A	4157.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr12	21629987	rs917854	T	C	2836.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr12	21629993	rs5796903	A	AC	928.73	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:46,33:0.42:79
chr12	21639385	rs369525826	TA	T	601.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.047;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.93;ReadPosRankSum=1.423;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:67,55:0.45:122
chr12	21639528	.	G	GA	30.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.022;ClippingRankSum=0.000;DP=95;ExcessHet=3.0103;FS=1.147;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.42;ReadPosRankSum=0.353;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:60,14:0.19:74
chr12	21639591	rs7964104	G	C	437.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.36;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr12	21643398	rs4987216	C	T	293.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:14,12:0.46:26
chr12	21644428	rs140439673	CA	C	319.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.401;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=1.450;QD=3.95;ReadPosRankSum=0.407;SOR=0.561;set=HC	GT:AD:AF:DP	0/1:44,37:0.46:81
chr12	21644667	rs10841834	G	A	2300.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:111,102:0.48:213
chr12	21654831	rs1060126	G	T	8229.77	.	AC=1;AF=0.500;AN=2;DB;DP=776;set=Intersection	GT:AD:AF:DP	0/1:374,395:0.51:769
chr12	21657590	rs67392337	AT	A	8144.73	.	AC=1;AF=0.500;AN=2;DB;DP=524;set=Intersection	GT:AD:AF:DP	0/1:249,262:0.51:511
chr12	21659973	rs16923862	T	C	1258.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:60,60:0.50:120
chr12	21661241	rs61926330	A	G	274.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:5,10:0.67:15
chr12	21661508	rs11046091	A	G	1102.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:24,46:0.66:70
chr12	21665207	rs61926342	A	G	2044.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:82,94:0.53:176
chr12	21679652	rs10564739	CTT	C	1945.73	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:45,51:0.53:96
chr12	21680609	rs7966780	C	G	1493.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:71,73:0.51:144
chr12	21684029	rs3765093	G	A	124.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.299;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.30;ReadPosRankSum=2.531;SOR=0.511;set=HC	GT:AD:AF:DP	0/1:20,9:0.31:29
chr12	21689882	rs10431213	T	A	583.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:42,30:0.42:72
chr12	21692166	rs36023861	CA	C	379.73	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:17,25:0.60:42
chr12	21693243	rs1871129	AT	TA	355.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;JOINED;set=Intersection	GT:AD:AF:DP	0/1:12,10:0.45:22
chr12	21695584	rs3741841	A	G	1022.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:44,44:0.50:88
chr12	21711009	rs7967170	C	A	543.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:35,24:0.41:59
chr12	21711111	rs7977474	G	C	2767.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:163,134:0.45:297
chr12	21711385	rs7977846	G	C	755.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:22,27:0.55:49
chr12	21712545	rs1871136	A	G	811.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:55,43:0.44:98
chr12	21712574	rs1871137	C	T	1321.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:69,61:0.47:130
chr12	21712728	rs111250042	GACATTCTTTGAAATT	G	965.73	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:32,26:0.45:58
chr12	21713308	rs4639981	T	A	5960.77	.	AC=1;AF=0.500;AN=2;DB;DP=609;set=Intersection	GT:AD:AF:DP	0/1:303,294:0.49:597
chr12	21713402	rs2306180	T	C	6815.77	.	AC=1;AF=0.500;AN=2;DB;DP=685;set=Intersection	GT:AD:AF:DP	0/1:331,343:0.51:674
chr12	21715801	rs1473421	A	G	4169.77	.	AC=1;AF=0.500;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	0/1:212,194:0.48:406
chr12	21716055	rs1473422	A	C	1489.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:82,61:0.43:143
chr12	21716098	rs1473423	T	C	1210.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:67,51:0.43:118
chr12	21727315	rs7963756	C	A	3482.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr12	21733121	rs2126887	T	G	1667.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr12	21757272	rs153944	A	G	611.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr12	21789968	rs1677134	G	T	491.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr12	21791272	rs1650289	T	C	1005.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr12	21791410	rs71053332	TA	T	1089.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.920;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=3.602;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=0.474;QD=13.62;ReadPosRankSum=-2.139;SOR=1.559;set=HC	GT:AD:AF:DP	1/1:8,72:0.90:80
chr12	21791455	rs1427830	A	T	1553.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.18;QD=26.34;SOR=1.421;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr12	21791565	rs1677129	A	C	79.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr12	21794865	rs1626023	A	T	2895.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr12	21796814	rs4762862	G	A	6593.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr12	21797029	rs1650294	A	G	10026.77	.	AC=2;AF=1.00;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	1/1:1,371:1.00:372
chr12	21799999	rs1540405	G	C	13978.77	.	AC=2;AF=1.00;AN=2;DB;DP=520;set=Intersection	GT:AD:AF:DP	1/1:0,512:1.00:512
chr12	21807432	rs1677078	T	C	2296.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr12	21807640	rs1650315	G	A	4874.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr12	21807687	rs7953579	C	G	3018.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr12	21958998	.	C	CA	340.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.127;ClippingRankSum=0.000;DP=572;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.68;ReadPosRankSum=1.706;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:411,92:0.18:503
chr12	21968960	.	CTA	C	732.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.171;ClippingRankSum=0.000;DP=48;ExcessHet=3.0103;FS=3.123;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.79;ReadPosRankSum=0.437;SOR=0.096;set=HC	GT:AD:AF:DP	0/1:19,20:0.51:39
chr12	21968969	.	AGTTTTTTTTTTT	A	1181	.	AC=1;AF=0.500;AN=2;BRF=0.34;FR=0.5000;HP=1;HapScore=3;MGOF=19;MMLQ=23;MQ=53.47;NF=0;NR=25;PP=1181;QD=48.96;SC=ACTATGTGGCAGTTTTTTTTT;SbPval=1.0;Source=Platypus;TC=40;TCF=0;TCR=40;TR=25;WE=21969007;WS=21968950;set=Platypus	GT:AD:AF:DP	0/1:15,25:0.62:40
chr12	21995555	rs1643235	C	A	426.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:19,18:0.49:37
chr12	22005003	rs2307024	T	G	1620.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:52,72:0.58:124
chr12	22005258	rs117514003	G	T	3370.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:135,154:0.53:289
chr12	22005510	rs704183	A	G	4054.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr12	22014160	.	C	CA	133.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.762;ClippingRankSum=0.000;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.08;ReadPosRankSum=2.452;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:14,8:0.36:22
chr12	22014161	rs2418018	C	A	466.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.480;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.22;ReadPosRankSum=-1.239;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:8,14:0.64:22
chr12	22014162	.	C	T	142.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.480;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.49;ReadPosRankSum=1.897;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:14,8:0.36:22
chr12	22014163	rs2418019	C	T	466.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.254;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.22;ReadPosRankSum=-1.790;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:8,14:0.64:22
chr12	22014164	.	C	A	142.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.108;ClippingRankSum=0.000;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.49;ReadPosRankSum=1.606;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:14,8:0.36:22
chr12	22014165	rs2418020	C	A,T	1173.77	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=53.35;SOR=1.931;set=HC	GT:AD:AF:DP	1/2:0,14,8:0.64,0.36:22
chr12	22016004	rs4148670	GA	G	426.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.347;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.151;QD=4.31;ReadPosRankSum=0.153;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:62,37:0.37:99
chr12	22017422	rs697250	A	G	3519.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr12	22017486	rs697251	C	G	2226.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr12	22035873	rs1356368	C	T	2752.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:89,123:0.58:212
chr12	22035883	rs1283802	T	G	1338.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:100,65:0.39:165
chr12	22047151	rs704216	G	T	4254.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr12	22047174	rs704217	C	T	2857.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:1,99:0.99:100
chr12	22063115	rs10770865	A	G	19033.77	.	AC=2;AF=1.00;AN=2;DB;DP=696;set=Intersection	GT:AD:AF:DP	1/1:1,684:1.00:685
chr12	22063251	rs35857705	CA	C	383.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.799;ClippingRankSum=0.000;DB;DP=460;ExcessHet=3.0103;FS=0.578;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=0.000;QD=1.05;ReadPosRankSum=-0.950;SOR=0.618;set=HC	GT:AD:AF:DP	0/1:272,95:0.26:367
chr12	22063337	rs4148656	A	G	3074.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr12	22063737	rs4762719	G	T	4315.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr12	22063749	rs4762720	T	C	5343.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr12	22063971	rs4148654	A	G	3394.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:1,118:0.99:119
chr12	22065699	rs3835048	G	GA	940.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr12	22068849	rs3759236	G	T	3372.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr12	22078245	rs2900493	G	C	2383.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr12	22078556	rs2277404	T	C	889.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:30,38:0.56:68
chr12	22078571	rs2176394	T	A	1544.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr12	22078838	rs2277405	T	G	2044.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:3,67:0.96:70
chr12	22086938	rs71530933	A	C	1708.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:118,89:0.43:207
chr12	22086976	rs6487252	A	C	3451.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr12	22089348	rs4586220	G	A	170.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:13,8:0.38:21
chr12	22215194	rs375987416	CT	C	347.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.669;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=3.177;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=1.949;QD=3.41;ReadPosRankSum=-0.515;SOR=1.127;set=HC	GT:AD:AF:DP	0/1:61,41:0.40:102
chr12	22354921	rs704219	A	G	2617.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:114,124:0.52:238
chr12	22439322	rs3819878	T	C	2680.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:111,118:0.52:229
chr12	22439467	rs3819879	T	G	4593.77	.	AC=1;AF=0.500;AN=2;DB;DP=495;set=Intersection	GT:AD:AF:DP	0/1:266,223:0.46:489
chr12	22478425	rs4762904	A	G	9645.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	1/1:0,360:1.00:360
chr12	22478698	rs4762905	C	A	1234.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr12	22489150	rs3809202	A	G	8508.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr12	22602796	rs2063573	A	G	15309.77	.	AC=2;AF=1.00;AN=2;DB;DP=587;set=Intersection	GT:AD:AF:DP	1/1:0,582:1.00:582
chr12	22606738	rs12424580	G	C	4887.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr12	22612291	rs148077355	CA	C	679.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.357;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=0.891;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.149;QD=5.62;ReadPosRankSum=0.527;SOR=0.824;set=HC	GT:AD:AF:DP	0/1:64,57:0.47:121
chr12	22665486	rs142702191	T	C	472.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:30,23:0.43:53
chr12	22665633	rs200568343	T	TA	53.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.028;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=3.427;QD=0.47;ReadPosRankSum=-0.009;SOR=0.596;set=HC	GT:AD:AF:DP	0/1:93,21:0.18:114
chr12	22778633	rs2271099	C	T	2907.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:148,132:0.47:280
chr12	22796994	rs11429701	A	AT	7412.73	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr12	22837282	rs2271097	A	G	44.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:8,3:0.27:11
chr12	23737326	rs11046991	C	T	1371.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:45,56:0.55:101
chr12	23737566	rs11046992	G	A	3824.77	.	AC=1;AF=0.500;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	0/1:141,175:0.55:316
chr12	23737664	rs34653390	AGT	A	443.73	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:18,17:0.49:35
chr12	23757245	rs1479452	C	T	873.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:30,41:0.58:71
chr12	23915457	.	A	G	357.77	.	AC=1;AF=0.500;AN=2;DP=36;set=Intersection	GT:AD:AF:DP	0/1:19,16:0.46:35
chr12	23915547	rs71059921	G	GA	301.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.458;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=2.485;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.95;ReadPosRankSum=-1.932;SOR=1.136;set=HC	GT:AD:AF:DP	0/1:36,25:0.41:61
chr12	23998888	rs7980561	T	C	13500.77	.	AC=2;AF=1.00;AN=2;DB;DP=515;set=Intersection	GT:AD:AF:DP	1/1:0,505:1.00:505
chr12	24102665	rs141363242	CCT	C,CCTCT	1263.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.486;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.80;MQRankSum=0.000;QD=23.40;ReadPosRankSum=0.647;SOR=4.091;set=HC	GT:AD:AF:DP	1/2:5,28,21:0.52,0.39:54
chr12	24102700	.	GTC	G	98.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.071;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.59;MQRankSum=0.000;QD=6.17;ReadPosRankSum=1.249;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:10,6:0.38:16
chr12	24103911	rs35800209	GCA	G	632.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.704;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=2.152;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=1.061;QD=10.55;ReadPosRankSum=-0.457;SOR=0.319;set=HC	GT:AD:AF:DP	0/1:32,28:0.47:60
chr12	24982706	rs35406045	TA	T	3090.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.465;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=0.591;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.18;ReadPosRankSum=2.152;SOR=0.618;set=HC	GT:AD:AF:DP	0/1:90,80:0.47:170
chr12	24982721	rs7398085	A	G	3035.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.097;ClippingRankSum=0.000;DB;DP=239;ExcessHet=3.0103;FS=0.539;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.81;ReadPosRankSum=4.421;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:121,84:0.41:205
chr12	24982726	rs28678340	G	A	4414.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.066;ClippingRankSum=0.000;DB;DP=261;ExcessHet=3.0103;FS=0.529;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.38;ReadPosRankSum=4.956;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:132,122:0.48:254
chr12	25031449	rs6487436	A	G	9782.77	.	AC=2;AF=1.00;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	1/1:0,369:1.00:369
chr12	25047480	rs61127951	GA	G	1329.73	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:51,92:0.64:143
chr12	25147300	rs699030	G	C	3836.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr12	25147362	rs1846016	G	A	424.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:40,22:0.35:62
chr12	25148755	rs864161	C	G	20838.77	.	AC=2;AF=1.00;AN=2;DB;DP=791;set=Intersection	GT:AD:AF:DP	1/1:0,785:1.00:785
chr12	25149982	rs75288396	G	A	158.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:11,9:0.45:20
chr12	25240988	rs75911568	G	T	1185.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:64,58:0.48:122
chr12	25241224	rs859154	G	A	229.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:12,10:0.45:22
chr12	25242595	rs7969931	C	G	509.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:39,29:0.43:68
chr12	25242758	rs77453388	A	G	233.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:20,12:0.38:32
chr12	25242776	rs10743538	C	T	451.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:11,20:0.65:31
chr12	25243115	rs1908946	G	C	2821.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:102,123:0.55:225
chr12	25243893	rs1979522	C	T	377.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:25,18:0.42:43
chr12	25249785	rs10771166	T	C	1193.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:78,57:0.42:135
chr12	25253984	rs11047834	A	T	305.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:27,24:0.47:51
chr12	25254975	rs7303889	A	C	9922.77	.	AC=2;AF=1.00;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	1/1:0,349:1.00:349
chr12	25255034	rs10842467	C	T	1887.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:93,83:0.47:176
chr12	25257166	rs12828225	T	A	769.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:38,31:0.45:69
chr12	25257182	rs34133737	GA	G	2389.73	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr12	25261735	rs859146	G	T	7216.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr12	25272027	rs2291365	A	G	916.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:59,41:0.41:100
chr12	25274593	rs2220195	A	G	1483.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr12	25276351	rs3830289	TGCTCTACC	T	4959.73	.	AC=1;AF=0.500;AN=2;DB;DP=369;MQ=60.03;set=Intersection	GT:AD:AF:DP	0/1:211,135:0.39:346
chr12	25297713	rs7971062	C	T	414.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:14,17:0.55:31
chr12	25299921	rs11047863	G	A	16802.77	.	AC=2;AF=1.00;AN=2;DB;DP=634;set=Intersection	GT:AD:AF:DP	1/1:0,627:1.00:627
chr12	25302481	rs10842485	T	C	802.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr12	25311333	rs12367971	G	A	167.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:14,9:0.39:23
chr12	25311489	rs10842496	G	T	782.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.061;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=2.456;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.75;ReadPosRankSum=0.194;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:71,45:0.39:116
chr12	25343516	rs10842501	C	T	479.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:26,24:0.48:50
chr12	25343703	rs200099292	TTTCC	T	975.73	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:42,28:0.40:70
chr12	25362217	rs9266	A	G	504.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:44,30:0.41:74
chr12	25362777	rs1137282	A	G	906.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:78,52:0.40:130
chr12	25368462	rs4362222	C	T	12815.77	.	AC=2;AF=1.00;AN=2;DB;DP=469;set=Intersection	GT:AD:AF:DP	1/1:0,464:1.00:464
chr12	25380071	rs11836509	T	G	291.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.929;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.16;ReadPosRankSum=-0.874;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:6,11:0.65:17
chr12	25388290	rs7133635	G	T	2611.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr12	25388316	rs7133640	G	C	837.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:37,42:0.53:79
chr12	25656920	rs7306993	C	T	377.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:9,16:0.64:25
chr12	25671759	rs1479500	T	A	5206.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr12	25673073	rs373949438	GATATACAT	G	132.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.505;ClippingRankSum=-0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.81;ReadPosRankSum=0.451;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:12,5:0.29:17
chr12	25673075	rs63213562	TATAC	T	39.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.420;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.48;ReadPosRankSum=-0.426;SOR=0.138;set=HC	GT:AD:AF:DP	0/1:12,4:0.25:16
chr12	25673079	rs1382849	C	T	88.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.827;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.93;ReadPosRankSum=-0.247;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:13,5:0.28:18
chr12	25678995	rs199719770	T	TA	102.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.903;ClippingRankSum=0.000;DB;DP=211;ExcessHet=3.0103;FS=2.033;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.51;ReadPosRankSum=-0.926;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:167,35:0.17:202
chr12	25679932	rs1705419	G	A	717.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr12	25699523	rs278990	A	G	2787.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr12	26026988	rs11048315	G	A	3858.77	.	AC=1;AF=0.500;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	0/1:200,185:0.48:385
chr12	26221613	rs80259561	CTT	C	3645.73	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:65,93:0.59:158
chr12	26231843	rs7133685	G	T	4570.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr12	26231898	rs4963952	G	A	5566.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr12	26275555	rs11048413	G	A	2678.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.76;SOR=1.043;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr12	26492555	rs34679762	A	AT	203.73	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:31,15:0.33:46
chr12	26568456	rs66797056	TAAGAAAAGA	T	2007.73	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:80,55:0.41:135
chr12	26580814	rs1818135	T	C	1537.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:39,63:0.62:102
chr12	26581306	rs4963995	G	A	1876.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:79,88:0.53:167
chr12	26592288	rs2270960	G	A	2432.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:92,102:0.53:194
chr12	26596618	rs2220406	C	T	2107.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:136,116:0.46:252
chr12	26639346	rs36049222	T	TA	438.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.035;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=2.448;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.44;ReadPosRankSum=1.046;SOR=1.688;set=HC	GT:AD:AF:DP	0/1:26,33:0.56:59
chr12	26703459	rs11048575	T	G	469.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr12	26709495	rs201390438	T	G	331.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.495;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=1.579;MLEAC=1;MLEAF=0.500;MQ=61.31;MQRankSum=-2.262;QD=10.05;ReadPosRankSum=0.837;SOR=0.387;set=HC	GT:AD:AF:DP	0/1:19,14:0.42:33
chr12	26709497	rs199663645	T	G	562.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.997;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.37;MQRankSum=-2.409;QD=16.08;ReadPosRankSum=0.877;SOR=0.507;set=HC	GT:AD:AF:DP	0/1:19,16:0.46:35
chr12	26732987	rs2230376	G	A	995.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.649;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=2.369;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.51;ReadPosRankSum=0.525;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:64,53:0.45:117
chr12	26733062	rs2230375	T	C	762.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:48,37:0.44:85
chr12	26749831	rs2230377	G	A	2140.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:138,106:0.43:244
chr12	26752897	rs12832680	C	T	1707.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr12	26755546	rs3736185	C	T	3287.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:176,153:0.47:329
chr12	26784910	rs61757113	C	T	2880.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:176,142:0.45:318
chr12	26809177	rs2880877	C	T	1693.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:95,79:0.45:174
chr12	26810777	rs2291264	T	C	3685.77	.	AC=1;AF=0.500;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	0/1:223,188:0.46:411
chr12	26811045	rs12313993	T	C	1466.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:71,77:0.52:148
chr12	26816496	rs1375656	T	C	3498.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr12	26819095	rs34107444	A	ATAGATAGATAGAT,ATAGATAGATAGATAGAT	334.73	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=27;set=Intersection	GT:AF:DP	0/1:0.81:21
chr12	26834804	rs111626763	T	TACTC	9843.73	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr12	26848410	rs1982385	A	C	852.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr12	26848663	rs3830260	A	AT	2270.73	.	AC=2;AF=1.00;AN=2;DB;DP=64;MQ=60.17;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr12	26868322	rs1900941	T	C	4193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.318;ClippingRankSum=0.000;DB;DP=440;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.80;ReadPosRankSum=0.129;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:222,206:0.48:428
chr12	26869047	rs12812095	C	T	2947.77	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:176,144:0.45:320
chr12	26869233	rs7957289	C	T	3345.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:159,156:0.50:315
chr12	26874138	rs11407207	G	GT	382.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.119;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.598;QD=3.58;ReadPosRankSum=0.942;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:72,35:0.33:107
chr12	26875235	rs2291262	A	G	1641.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:70,63:0.47:133
chr12	26875565	rs2291261	G	A	1059.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:45,43:0.49:88
chr12	26943170	rs7314747	A	T	5362.77	.	AC=1;AF=0.500;AN=2;DB;DP=534;set=Intersection	GT:AD:AF:DP	0/1:258,263:0.50:521
chr12	26985537	rs11048706	G	C	5081.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr12	26985807	rs11048708	T	G	7069.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr12	27058563	rs7397665	A	G	204.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:7,9:0.56:16
chr12	27059149	rs1488053	C	T	843.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:31,40:0.56:71
chr12	27059224	rs1488052	G	A	4083.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr12	27059422	rs1488051	T	C	385.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:12,16:0.57:28
chr12	27064232	rs3210635	C	T	2381.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:141,114:0.45:255
chr12	27066350	rs3736227	C	T	3217.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:138,149:0.52:287
chr12	27067530	rs148835650	G	A	2327.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:96,101:0.51:197
chr12	27075705	rs7137176	A	T	452.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:13,21:0.62:34
chr12	27081566	rs2029309	C	G	1449.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr12	27087703	rs708158	T	C	606.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr12	27117382	rs11048788	G	C	281.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:9,12:0.57:21
chr12	27132691	rs143662680	C	CA	3210.73	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:137,144:0.51:281
chr12	27135669	rs74332145	T	G	3463.77	.	AC=1;AF=0.500;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	0/1:200,184:0.48:384
chr12	27152666	rs7314394	T	C	3811.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;MQ=60.07;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr12	27165684	rs12321522	G	A	3229.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:135,148:0.52:283
chr12	27175494	rs3963548	T	C	3507.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr12	27175561	rs369494261	A	T	2136.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:121,105:0.46:226
chr12	27175640	rs1872191	A	G	6799.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr12	27179551	rs145100138	CTTATT	C	1274.73	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:30,34:0.53:64
chr12	27181513	rs8628	T	G	1953.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:54,81:0.60:135
chr12	27182956	rs111936388	A	T	485.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.288;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.59;ReadPosRankSum=-0.820;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:39,25:0.39:64
chr12	27234200	rs708165	T	C	4240.77	.	AC=1;AF=0.500;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	0/1:157,196:0.56:353
chr12	27234505	rs34457591	A	T	708.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:42,35:0.45:77
chr12	27234999	rs708167	T	C	3888.77	.	AC=1;AF=0.500;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	0/1:185,177:0.49:362
chr12	27235381	rs708168	G	A	1936.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:93,94:0.50:187
chr12	27235547	rs138774709	C	CT	265.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.008;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=3.676;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.30;ReadPosRankSum=-0.703;SOR=0.243;set=HC	GT:AD:AF:DP	0/1:12,20:0.62:32
chr12	27300420	rs841618	T	C	1480.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr12	27461984	rs6487599	T	C	893.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr12	27470682	rs2242185	C	T	1128.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr12	27470866	rs6487601	G	A	6976.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr12	27486168	rs62758860	GA	G	1013.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr12	27533367	rs4964060	A	G	10352.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:0,382:1.00:382
chr12	27553788	rs144806597	G	GT	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.370;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.58;ReadPosRankSum=0.592;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:16,6:0.27:22
chr12	27553794	rs2927028	C	T	695.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr12	27569025	rs1256955	G	T	889.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr12	27623433	rs35052632	G	GT	2602.73	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr12	27623490	rs776199	A	G	6850.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr12	27625823	rs386428	A	T	11963.77	.	AC=2;AF=1.00;AN=2;DB;DP=462;set=Intersection	GT:AD:AF:DP	1/1:2,453:1.00:455
chr12	27625879	rs381905	G	A	10599.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.121;ClippingRankSum=0.000;DB;DP=255;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=41.90;ReadPosRankSum=-1.214;SOR=1.481;set=HC	GT:AD:AF:DP	1/1:2,251:0.99:253
chr12	27625887	rs401739	T	C	10040.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.127;ClippingRankSum=0.000;DB;DP=231;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=43.85;ReadPosRankSum=-1.054;SOR=1.589;set=HC	GT:AD:AF:DP	1/1:2,227:0.99:229
chr12	27627805	rs411816	G	A	10206.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	1/1:0,378:1.00:378
chr12	27647420	rs149908760	T	TTTA,TTTATTA	1070.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.042;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=3.411;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=34.54;ReadPosRankSum=-1.088;SOR=2.226;set=HC	GT:AD:AF:DP	1/2:2,5,24:0.16,0.77:31
chr12	27654898	rs61731840	C	T	587.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:35,27:0.44:62
chr12	27786115	rs3751231	C	T	895.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:41,39:0.49:80
chr12	27788021	rs2075378	G	A	2776.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:141,139:0.50:280
chr12	27799154	rs2303397	C	T	2982.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:127,140:0.52:267
chr12	27799341	rs59630572	CT	C	597.76	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.160;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=2.750;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.99;ReadPosRankSum=2.207;SOR=1.359;set=HC	GT:AD:AF:DP	1/1:3,23:0.88:26
chr12	27800576	rs34792131	C	CT	3494.73	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:3,146:0.98:149
chr12	27800746	rs2194816	G	T	4990.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr12	27807906	rs7979973	G	A	1698.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr12	27811649	rs10771354	G	T	916.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr12	27813754	rs7132997	A	G	1728.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr12	27813903	rs7133222	C	T	3274.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr12	27813961	rs7133231	A	G	3345.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr12	27813973	rs7133328	C	T	5519.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.81;SOR=0.791;set=HC	GT:AD:AF:DP	1/1:0,126:1.00:126
chr12	27813981	rs7133545	G	C	5405.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.05;SOR=0.833;set=HC	GT:AD:AF:DP	1/1:0,120:1.00:120
chr12	27814085	rs6487629	C	T	972.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr12	27817408	rs34613698	CT	C	7738.73	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:4,225:0.98:229
chr12	27820302	rs2033024	C	T	2928.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr12	27826780	rs2052673	T	G	6872.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.43;SOR=0.772;set=HC	GT:AD:AF:DP	1/1:0,260:1.00:260
chr12	27832308	rs10743607	G	A	854.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr12	27845924	rs3764010	C	T	4101.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr12	27849795	rs929948	CA	TG	8613.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;JOINED;set=Intersection	GT:AD:AF:DP	1/1:5,310:0.98:315
chr12	27867706	rs11049106	C	T	6834.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr12	27915718	rs10842975	A	T	3067.77	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:178,145:0.45:323
chr12	27944858	rs2288232	G	A	2333.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr12	28412397	rs199541046	G	GT	761.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.056;ClippingRankSum=0.000;DB;DP=239;ExcessHet=3.0103;FS=1.487;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.53;ReadPosRankSum=0.096;SOR=0.871;set=HC	GT:AD:AF:DP	0/1:95,73:0.43:168
chr12	28412398	rs7969414	G	T	3231.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.774;ClippingRankSum=0.000;DB;DP=237;ExcessHet=3.0103;FS=3.767;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.47;ReadPosRankSum=-0.864;SOR=0.396;set=HC	GT:AD:AF:DP	0/1:31,144:0.82:175
chr12	28457618	rs6487674	A	C	3974.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr12	28544464	rs3741760	G	A	1783.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr12	28605426	rs10771427	G	A	1232.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr12	28724216	rs6487691	T	C	4287.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr12	28726042	rs6487692	C	T	1897.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr12	28732873	.	CAA	C	92.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.807;ClippingRankSum=-0.000;DP=39;ExcessHet=3.0103;FS=1.957;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.45;ReadPosRankSum=-0.658;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:9,8:0.47:17
chr12	29586952	rs67142894	TTCTC	T	457.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr12	29593769	rs2304458	A	C	2664.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr12	29598373	rs7133304	T	C	6662.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr12	29618221	rs137940251	A	C	2186.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:94,97:0.51:191
chr12	29618273	rs10771537	G	C	1970.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr12	29630081	rs7975356	G	A	12185.77	.	AC=2;AF=1.00;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	1/1:0,444:1.00:444
chr12	29639186	rs3847680	T	C	3926.77	.	AC=1;AF=0.500;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	0/1:162,187:0.54:349
chr12	29642542	rs967182	C	T	1081.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:84,56:0.40:140
chr12	29642573	rs967181	A	C	1305.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:90,66:0.42:156
chr12	29648275	rs10843438	G	A	4290.77	.	AC=1;AF=0.500;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	0/1:183,203:0.53:386
chr12	29650361	rs10771544	A	C	627.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:25,26:0.51:51
chr12	29650702	rs822879	C	T	6136.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr12	29667659	rs299438	G	A	781.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:23,34:0.60:57
chr12	29667680	rs299437	A	G	635.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:18,27:0.60:45
chr12	29721945	rs2254945	C	T	2806.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr12	29813709	rs144268878	GTA	G	68.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.863;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.73;ReadPosRankSum=0.901;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:8,4:0.33:12
chr12	29813776	rs201029987	C	A	258.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:21,15:0.42:36
chr12	29921074	rs302316	A	G	1688.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr12	29936613	rs184221	T	G	1281.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr12	30783743	rs2278558	C	T	607.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:54,33:0.38:87
chr12	30809492	rs7974489	G	A	355.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr12	30814043	rs67741303	CTATTA	C	882.73	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:31,25:0.45:56
chr12	30814259	rs10771753	C	T	1735.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:100,85:0.46:185
chr12	30815157	rs2118780	A	T	3245.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr12	30818081	rs10843807	A	G	411.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:16,19:0.54:35
chr12	30818406	rs10843808	T	G	271.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:11,11:0.50:22
chr12	30822240	rs7955420	C	A	100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.384;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.16;ReadPosRankSum=0.471;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:66,21:0.24:87
chr12	30823971	rs1054426	A	G	6353.77	.	AC=1;AF=0.500;AN=2;DB;DP=601;set=Intersection	GT:AD:AF:DP	0/1:304,292:0.49:596
chr12	30827086	rs2289301	G	C	273.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:13,12:0.48:25
chr12	30841285	rs12809355	G	C	1087.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:86,56:0.39:142
chr12	30843377	rs2289302	T	C	1400.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.596;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=2.274;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.78;ReadPosRankSum=0.465;SOR=0.511;set=HC	GT:AD:AF:DP	0/1:64,66:0.51:130
chr12	30848675	rs12809335	C	T	5301.77	.	AC=1;AF=0.500;AN=2;DB;DP=491;set=Intersection	GT:AD:AF:DP	0/1:229,256:0.53:485
chr12	30867794	rs10843820	C	T	359.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:28,16:0.36:44
chr12	30868002	rs13656	C	T	4047.77	.	AC=1;AF=0.500;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	0/1:242,207:0.46:449
chr12	30877391	rs7299800	G	T	1980.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:101,97:0.49:198
chr12	30878859	rs7304879	G	C	648.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:26,28:0.52:54
chr12	30879088	rs10843822	T	C	1720.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:84,83:0.50:167
chr12	30881488	rs11406794	C	CA	577.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.221;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=4.819;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=1.517;QD=5.40;ReadPosRankSum=1.642;SOR=0.320;set=HC	GT:AD:AF:DP	0/1:57,50:0.47:107
chr12	30881809	rs2304630	T	C	3953.77	.	AC=1;AF=0.500;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	0/1:242,197:0.45:439
chr12	30888001	rs12146709	T	C	10522.77	.	AC=1;AF=0.500;AN=2;DB;DP=974;set=Intersection	GT:AD:AF:DP	0/1:489,478:0.49:967
chr12	30893875	rs10771762	T	C	1976.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:59,87:0.60:146
chr12	30948824	rs73082102	G	C	2785.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:148,129:0.47:277
chr12	30948848	rs256653	G	C	3723.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:172,173:0.50:345
chr12	30949206	rs256654	A	G	9438.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	1/1:0,330:1.00:330
chr12	31131712	rs35097	T	C	2838.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr12	31132479	rs35096	A	C	7989.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:1,278:1.00:279
chr12	31135418	rs2075332	C	A	2264.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:111,109:0.50:220
chr12	31135478	rs35089	T	C	6977.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr12	31135579	rs2075333	T	C	4606.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr12	31135905	rs888473	A	T	993.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr12	31135925	rs75495170	G	A	517.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:11,20:0.65:31
chr12	31144884	rs35076	A	G	5558.77	.	AC=1;AF=0.500;AN=2;DB;DP=633;set=Intersection	GT:AD:AF:DP	0/1:350,276:0.44:626
chr12	31237026	rs28559720	A	G	3701.77	.	AC=1;AF=0.500;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	0/1:184,175:0.49:359
chr12	31237372	rs3930906	A	T	1131.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:56,52:0.48:108
chr12	31237700	rs3881296	G	A	1150.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:70,59:0.46:129
chr12	31238075	rs4931428	G	A	523.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:11,24:0.69:35
chr12	31240862	rs7308754	A	T	1060.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:87,52:0.37:139
chr12	31240925	rs7308773	A	G	2642.77	.	AC=1;AF=0.500;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	0/1:206,143:0.41:349
chr12	31240960	rs7309189	G	A	2903.77	.	AC=1;AF=0.500;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	0/1:216,152:0.41:368
chr12	31242271	rs2005896	G	A	2074.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:131,96:0.42:227
chr12	31242314	rs2005897	T	C	3600.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.761;ClippingRankSum=0.000;DB;DP=377;ExcessHet=3.0103;FS=2.738;MLEAC=1;MLEAF=0.500;MQ=59.77;MQRankSum=-2.198;QD=9.55;ReadPosRankSum=-0.370;SOR=0.844;set=HC	GT:AD:AF:DP	0/1:206,171:0.45:377
chr12	31242399	rs3881298	T	C	5530.77	.	AC=1;AF=0.500;AN=2;DB;DP=633;set=Intersection	GT:AD:AF:DP	0/1:345,287:0.45:632
chr12	31242440	rs2075318	A	G	4612.77	.	AC=1;AF=0.500;AN=2;DB;DP=509;set=Intersection	GT:AD:AF:DP	0/1:275,233:0.46:508
chr12	31243131	rs2075319	G	A	83.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.691;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=48.89;MQRankSum=-2.065;QD=6.98;ReadPosRankSum=0.628;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:6,6:0.50:12
chr12	31244846	rs1808348	C	G	2695.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:121,126:0.51:247
chr12	31244924	rs1808349	G	A	861.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:27,32:0.54:59
chr12	31245741	rs2075321	A	G	1464.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:75,72:0.49:147
chr12	31245915	rs143697146	C	T	2086.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:130,104:0.44:234
chr12	31246371	rs10843882	C	T	1679.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:88,79:0.47:167
chr12	31246438	rs7970074	T	C	1239.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.226;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.30;MQRankSum=-1.314;QD=20.00;ReadPosRankSum=1.742;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:29,33:0.53:62
chr12	31249118	rs9788128	A	G	32.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.509;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.19;MQRankSum=-6.627;QD=0.36;ReadPosRankSum=0.705;SOR=0.470;set=HC	GT:AD:AF:DP	0/1:80,10:0.11:90
chr12	31249319	rs71455621	T	C	277.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.698;ClippingRankSum=0.000;DB;DP=221;ExcessHet=3.0103;FS=14.208;MLEAC=1;MLEAF=0.500;MQ=55.35;MQRankSum=-8.632;QD=1.27;ReadPosRankSum=2.014;SOR=1.088;set=HC	GT:AD:AF:DP	0/1:184,34:0.16:218
chr12	31249708	rs71455622	C	T	6189.77	.	AC=1;AF=0.500;AN=2;DB;DP=572;set=Intersection	GT:AD:AF:DP	0/1:284,284:0.50:568
chr12	31249861	rs2075322	C	G	6349.77	.	AC=1;AF=0.500;AN=2;DB;DP=607;set=Intersection	GT:AD:AF:DP	0/1:301,302:0.50:603
chr12	31250669	rs7971579	G	A	645.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:58,36:0.38:94
chr12	31250768	rs2909388	C	T	1527.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:250,83:0.25:333
chr12	31253995	rs1046456	C	T	10985.77	.	AC=1;AF=0.500;AN=2;DB;DP=1087;set=Intersection	GT:AD:AF:DP	0/1:535,545:0.50:1080
chr12	31254642	rs7952861	T	A	651.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:33,29:0.47:62
chr12	31254701	rs7966366	G	T	1624.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:65,73:0.53:138
chr12	31254752	rs7966272	C	T	2822.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.135;ClippingRankSum=0.000;DB;DP=264;ExcessHet=3.0103;FS=0.953;MLEAC=1;MLEAF=0.500;MQ=59.67;MQRankSum=-1.181;QD=10.86;ReadPosRankSum=-0.455;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:126,134:0.52:260
chr12	31255263	rs10771803	G	A	9852.77	.	AC=1;AF=0.500;AN=2;DB;DP=1000;set=Intersection	GT:AD:AF:DP	0/1:517,477:0.48:994
chr12	31255772	rs58740356	A	AG	1126.73	.	AC=1;AF=0.500;AN=2;DB;DP=80;MQ=59.81;set=Intersection	GT:AD:AF:DP	0/1:40,39:0.49:79
chr12	31256075	rs3825318	G	A	592.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:25,25:0.50:50
chr12	31256417	rs139488871	T	C	2433.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:138,118:0.46:256
chr12	31256517	rs140335402	C	T	3596.77	.	AC=1;AF=0.500;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	0/1:199,172:0.46:371
chr12	31256546	rs1046457	G	A	3356.77	.	AC=1;AF=0.500;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	0/1:194,162:0.46:356
chr12	31256905	rs1046458	T	C	1208.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:56,62:0.53:118
chr12	31256995	rs11545332	G	A	681.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:14,29:0.67:43
chr12	31264743	rs4930953	C	T	797.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:58,41:0.41:99
chr12	31264770	rs1053552	A	G	627.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:41,33:0.45:74
chr12	31265823	rs2302848	A	G	397.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:25,20:0.44:45
chr12	31265872	rs2302849	C	T	961.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:55,44:0.44:99
chr12	31265925	rs2302850	C	G	1780.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:119,89:0.43:208
chr12	31265983	rs1053534	G	A	2136.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:131,109:0.45:240
chr12	31266042	rs2302853	C	T	1480.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:92,76:0.45:168
chr12	31267744	rs7968684	A	C	1405.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:96,72:0.43:168
chr12	31269189	rs25559	C	CATCAT	900.73	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:68,26:0.28:94
chr12	31270076	rs58035829	A	C	635.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.471;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=15.633;MLEAC=1;MLEAF=0.500;MQ=57.65;MQRankSum=-13.719;QD=3.00;ReadPosRankSum=-0.352;SOR=2.033;set=HC	GT:AD:AF:DP	0/1:182,30:0.14:212
chr12	31270080	rs59046327	G	GAAA	561.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.227;ClippingRankSum=0.000;DB;DP=208;ExcessHet=3.0103;FS=12.200;MLEAC=1;MLEAF=0.500;MQ=57.70;MQRankSum=-14.009;QD=2.75;ReadPosRankSum=-0.252;SOR=1.817;set=HC	GT:AD:AF:DP	0/1:177,27:0.13:204
chr12	31270149	rs7316147	GC	CA	684.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.289;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=3.300;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.67;MQRankSum=-7.078;QD=5.95;ReadPosRankSum=0.692;SOR=0.352;set=HC	GT:AD:AF:DP	0/1:91,24:0.21:115
chr12	31270171	rs7301557	T	C	731.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.864;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.65;MQRankSum=-5.396;QD=8.41;ReadPosRankSum=3.282;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:63,24:0.28:87
chr12	31282765	rs2536839	A	T	443.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:89,31:0.26:120
chr12	31282784	rs35666624	A	G	774.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:83,44:0.35:127
chr12	31284251	rs28460499	A	C	920.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:44,38:0.46:82
chr12	31285101	rs2933405	A	G	1471.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:53,58:0.52:111
chr12	31285169	rs2287449	A	T	3208.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:173,158:0.48:331
chr12	31285991	rs3853618	A	C	384.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.944;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.52;MQRankSum=0.015;QD=9.87;ReadPosRankSum=-0.240;SOR=0.519;set=HC	GT:AD:AF:DP	0/1:22,17:0.44:39
chr12	31286189	rs3844571	T	C	4049.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr12	31288835	rs200865477	G	GA	670.73	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:89,34:0.28:123
chr12	31288884	rs4931444	G	T	6242.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:1,220:1.00:221
chr12	31288955	rs11051266	G	A	3506.73	.	AC=1;AF=0.500;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	0/1:165,165:0.50:330
chr12	31297722	rs55758709	C	T	473.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:25,20:0.44:45
chr12	31297871	rs12309295	G	C	2911.77	.	AC=1;AF=0.500;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	0/1:232,153:0.40:385
chr12	31300754	rs116358569	T	C	2019.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:164,102:0.38:266
chr12	31300838	rs145803469	G	T	4828.77	.	AC=1;AF=0.500;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	0/1:186,218:0.54:404
chr12	31300891	rs56144986	C	A	5126.77	.	AC=1;AF=0.500;AN=2;DB;DP=528;set=Intersection	GT:AD:AF:DP	0/1:282,243:0.46:525
chr12	31301888	rs11051274	T	C	2708.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:158,126:0.44:284
chr12	31302233	rs12308258	C	A	2335.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:115,108:0.48:223
chr12	31307173	rs4931449	A	T	992.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:64,50:0.44:114
chr12	31310983	rs7971718	G	A	3755.77	.	AC=1;AF=0.500;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	0/1:265,194:0.42:459
chr12	31311973	rs61733843	G	A	3195.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:168,150:0.47:318
chr12	31359083	rs61917095	C	T	3537.77	.	AC=1;AF=0.500;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	0/1:197,171:0.46:368
chr12	31359159	rs3065666	C	CAATGGTAA	1745.73	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:41,46:0.53:87
chr12	31359210	rs2164498	A	G	1452.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr12	31440813	rs145113039	AAAAAAG	A	154.73	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:6,5:0.45:11
chr12	31476881	rs78044110	C	A	4631.77	.	AC=1;AF=0.500;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	0/1:208,234:0.53:442
chr12	31478036	rs77154299	C	G	5842.77	.	AC=1;AF=0.500;AN=2;DB;DP=555;set=Intersection	GT:AD:AF:DP	0/1:287,259:0.47:546
chr12	31539122	rs3741877	A	G	2655.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:152,135:0.47:287
chr12	31539303	rs708200	G	T	586.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:18,23:0.56:41
chr12	31542191	rs10843937	A	G	1727.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:74,69:0.48:143
chr12	31545103	rs708218	T	C	811.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr12	31545381	rs792874	A	G	7497.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:2,274:0.99:276
chr12	31545682	rs7975761	A	G	3449.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:141,165:0.54:306
chr12	31551002	.	CT	C	49	.	AC=1;AF=0.500;AN=2;BRF=0.07;FR=0.5000;HP=7;HapScore=2;MGOF=1;MMLQ=26;MQ=60.0;NF=2;NR=1;PP=49;QD=26.0;SC=CAACTTTCTTCTTTTTAAAAT;SbPval=0.27;Source=Platypus;TC=10;TCF=9;TCR=1;TR=3;WE=31551010;WS=31550999;set=Platypus	GT:AD:AF:DP	1/0:7,3:0.30:10
chr12	31551350	rs1798769	C	T	4262.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr12	31568221	rs793159	C	T	6249.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr12	31577378	rs34764768	A	AT	1932.73	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:116,117:0.50:233
chr12	31586007	rs2682695	C	T	1185.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:61,56:0.48:117
chr12	31600400	rs7976644	G	A	694.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:41,32:0.44:73
chr12	31632449	rs3741878	T	C	935.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:38,41:0.52:79
chr12	31633258	rs113784337	G	GT	963.73	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:30,50:0.62:80
chr12	31648723	rs4931506	G	A	2664.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:163,134:0.45:297
chr12	31648728	rs143241018	GA	G	2216.73	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:177,142:0.45:319
chr12	31648826	rs4930979	C	T	3885.77	.	AC=1;AF=0.500;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	0/1:191,190:0.50:381
chr12	31648948	rs4931507	G	A	686.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:27,28:0.51:55
chr12	31693975	rs34225458	T	TA	1772.73	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:111,111:0.50:222
chr12	31814741	rs7959989	G	C	1420.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr12	31819262	rs75048934	G	A	193.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:20,9:0.31:29
chr12	31820564	rs201646763	CT	C	97.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.826;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=2.927;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.42;ReadPosRankSum=-0.942;SOR=1.281;set=HC	GT:AD:AF:DP	0/1:48,21:0.30:69
chr12	31826778	rs76930395	T	C	769.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:21,30:0.59:51
chr12	31850220	rs2388926	C	T	2064.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr12	31862107	.	T	TA	147.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.256;ClippingRankSum=0.000;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.719;QD=1.57;ReadPosRankSum=0.264;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:72,22:0.23:94
chr12	31908050	rs6488005	A	C	23224.77	.	AC=2;AF=1.00;AN=2;DB;DP=884;set=Intersection	GT:AD:AF:DP	1/1:2,878:1.00:880
chr12	31944691	rs3759294	A	C	4837.77	.	AC=1;AF=0.500;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	0/1:210,226:0.52:436
chr12	31944985	rs3759295	T	G	9368.77	.	AC=1;AF=0.500;AN=2;DB;DP=964;set=Intersection	GT:AD:AF:DP	0/1:507,452:0.47:959
chr12	32134207	rs2388981	C	A	20919.77	.	AC=2;AF=1.00;AN=2;DB;DP=759;set=Intersection	GT:AD:AF:DP	1/1:2,744:1.00:746
chr12	32134240	rs2388982	C	T	21122.77	.	AC=2;AF=1.00;AN=2;DB;DP=786;set=Intersection	GT:AD:AF:DP	1/1:0,772:1.00:772
chr12	32134638	rs2166807	T	C	16539.77	.	AC=2;AF=1.00;AN=2;DB;DP=581;set=Intersection	GT:AD:AF:DP	1/1:0,575:1.00:575
chr12	32134720	rs79406084	T	A	7029.77	.	AC=1;AF=0.500;AN=2;DB;DP=774;set=Intersection	GT:AD:AF:DP	0/1:418,337:0.45:755
chr12	32135186	rs3759302	T	A	8262.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr12	32135441	rs3759301	T	C	17742.77	.	AC=2;AF=1.00;AN=2;DB;DP=644;set=Intersection	GT:AD:AF:DP	1/1:0,642:1.00:642
chr12	32135829	rs147359180	A	G	6008.77	.	AC=1;AF=0.500;AN=2;DB;DP=559;set=Intersection	GT:AD:AF:DP	0/1:276,269:0.49:545
chr12	32137565	rs1057994	G	A	8312.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr12	32137852	rs3759297	C	G	13261.77	.	AC=2;AF=1.00;AN=2;DB;DP=513;set=Intersection	GT:AD:AF:DP	1/1:0,506:1.00:506
chr12	32138924	rs7302975	T	C	3965.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr12	32138974	rs35804480	CT	C	2493.73	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr12	32261435	rs1144715	A	G	156.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr12	32446835	rs261877	G	A	1173.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr12	32446901	rs261878	T	C	1453.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:64,67:0.51:131
chr12	32459070	rs41521147	T	G	1416.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:53,64:0.55:117
chr12	32480327	rs145320294	G	A	1312.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:85,66:0.44:151
chr12	32481093	rs3748275	G	C	10244.77	.	AC=1;AF=0.500;AN=2;DB;DP=1062;set=Intersection	GT:AD:AF:DP	0/1:578,470:0.45:1048
chr12	32481577	rs3748276	A	G	362.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:9,14:0.61:23
chr12	32487644	rs10844188	T	A	3520.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:151,157:0.51:308
chr12	32490348	rs2388988	G	A	662.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:31,29:0.48:60
chr12	32490369	rs2388987	G	A	4064.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.64;SOR=2.437;set=HC	GT:AD:AF:DP	1/1:0,108:1.00:108
chr12	32490369	.	GCTTAAC	ACTTAAC,ACTTAAG	1032	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.36;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=8;MMLQ=26;MQ=60.0;NF=74,39;NR=19,8;PP=752,1032;QD=8.45990551126;SC=TTACTTTTCAGCTTAACTCCC;SbPval=0.53;Source=Platypus;TC=93;TCF=74;TCR=19;TR=93,47;WE=32490383;WS=32490359;set=Platypus	GT:AF:DP	0/1:1.00:93
chr12	32490375	rs4604975	C	G	1570.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.847;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=2.875;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.31;ReadPosRankSum=-1.001;SOR=1.106;set=HC	GT:AD:AF:DP	0/1:55,63:0.53:118
chr12	32490764	rs2270786	G	A	2117.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:120,104:0.46:224
chr12	32490849	rs7309590	G	A	829.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.304;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=2.239;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.85;ReadPosRankSum=0.427;SOR=0.392;set=HC	GT:AD:AF:DP	0/1:33,37:0.53:70
chr12	32490850	rs1057779	C	G	2601.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.17;SOR=1.931;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr12	32491626	rs1471909	G	A	987.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr12	32491969	rs2291419	C	T	523.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:12,20:0.62:32
chr12	32520416	rs11351681	GA	G	241.25	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:2,16:0.89:18
chr12	32530257	rs7298381	G	T	1135.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:44,41:0.48:85
chr12	32530385	rs7298319	C	G	6305.77	.	AC=1;AF=0.500;AN=2;DB;DP=637;set=Intersection	GT:AD:AF:DP	0/1:331,302:0.48:633
chr12	32530580	rs11051966	G	A	4610.77	.	AC=1;AF=0.500;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	0/1:218,214:0.50:432
chr12	32639156	rs6488061	C	A	1877.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr12	32854210	rs373760863	CA	C	64.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.340;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=1.350;QD=1.90;ReadPosRankSum=-2.158;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:23,11:0.32:34
chr12	32854602	rs9737752	G	A	1393.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr12	32890685	rs2177704	C	T	5224.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr12	32903554	.	G	C	1787.77	.	AC=1;AF=0.500;AN=2;DP=104;set=Intersection	GT:AD:AF:DP	0/1:36,67:0.65:103
chr12	32945495	rs7956824	C	T	37425.77	.	AC=2;AF=1.00;AN=2;DB;DP=1420;set=Intersection	GT:AD:AF:DP	1/1:2,1406:1.00:1408
chr12	32945721	rs6488091	G	T	3568.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr12	32945769	rs6488092	G	C	1574.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr12	32955647	rs7975824	C	A	1318.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr12	32974245	rs10772008	C	T	3477.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr12	33049781	rs187291890	G	A	183.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.97;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr12	33578997	rs141090671	TCA	T	355.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.638;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.09;ReadPosRankSum=1.531;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:87,28:0.24:115
chr12	34175508	rs12367881	T	C	2165.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:117,100:0.46:217
chr12	34178732	rs149880150	TA	T	4267.73	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:65,122:0.65:187
chr12	34182369	rs10844778	G	A	520.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:20,22:0.52:42
chr12	38710583	rs7296576	C	T	754.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:18,27:0.60:45
chr12	38711020	rs11183276	T	C	238.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:16,10:0.38:26
chr12	38712142	rs6582584	C	G	27839.77	.	AC=2;AF=1.00;AN=2;DB;DP=1040;set=Intersection	GT:AD:AF:DP	1/1:0,1034:1.00:1034
chr12	38715000	rs35518352	A	G	5217.77	.	AC=1;AF=0.500;AN=2;DB;DP=486;set=Intersection	GT:AD:AF:DP	0/1:238,231:0.49:469
chr12	38717678	rs6582607	T	C	2062.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:102,93:0.48:195
chr12	39087609	rs3759139	G	A	3681.77	.	AC=1;AF=0.500;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	0/1:209,182:0.47:391
chr12	39087687	rs826877	A	C	5544.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr12	39096664	rs7960616	T	A	1244.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:67,64:0.49:131
chr12	39117384	rs844115	C	A	1044.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:41,42:0.51:83
chr12	39124173	rs5797589	G	GA	2171.73	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr12	39154492	rs12300353	G	C	1190.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:30,44:0.59:74
chr12	39233771	rs3803020	A	G	1689.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.85;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr12	39735348	rs79089655	C	A	4405.77	.	AC=1;AF=0.500;AN=2;DB;DP=622;set=Intersection	GT:AD:AF:DP	0/1:378,238:0.39:616
chr12	40001547	.	G	GT	471.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.533;ClippingRankSum=0.000;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.43;MQRankSum=1.814;QD=6.64;ReadPosRankSum=0.157;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:31,40:0.56:71
chr12	40010863	rs61736446	C	T	4086.77	.	AC=1;AF=0.500;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	0/1:230,205:0.47:435
chr12	40011025	rs66517223	CT	C	160.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.280;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.59;ReadPosRankSum=0.662;SOR=0.936;set=HC	GT:AD:AF:DP	0/1:20,15:0.43:35
chr12	40034699	rs11836770	G	A	1159.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.878;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.738;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.05;ReadPosRankSum=-0.939;SOR=0.600;set=HC	GT:AD:AF:DP	0/1:48,57:0.54:105
chr12	40037727	rs10735878	A	G	1953.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr12	40040059	rs151119934	G	GA	497.73	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:16,17:0.52:33
chr12	40040331	rs11172990	C	T	748.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:33,35:0.51:68
chr12	40040525	rs7971290	G	A	101.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:6,5:0.45:11
chr12	40077028	rs10047563	A	G	1219.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr12	40345255	rs73092276	T	A	257.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:19,12:0.39:31
chr12	40499347	rs7305377	G	A	5605.77	.	AC=1;AF=0.500;AN=2;DB;DP=478;set=Intersection	GT:AD:AF:DP	0/1:215,261:0.55:476
chr12	40499639	rs7305766	G	T	8478.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:1,317:1.00:318
chr12	40619082	rs2256408	G	A	5476.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr12	40619301	rs2723273	G	A	2973.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr12	40619542	rs2256286	A	G	4041.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr12	40626230	rs1352879	T	C	9844.77	.	AC=2;AF=1.00;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	1/1:0,353:1.00:353
chr12	40626285	rs1352878	C	T	5357.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr12	40629595	.	GTTT	G	216.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.556;ClippingRankSum=-0.000;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=0.566;QD=15.48;ReadPosRankSum=1.400;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:6,8:0.57:14
chr12	40631791	rs10878245	T	C	1166.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:78,59:0.43:137
chr12	40657537	rs10784461	A	G	639.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr12	40657771	rs10784462	C	G	1708.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr12	40681142	rs138343113	C	CT	4801.73	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr12	40702846	rs7305344	A	T	1222.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr12	40703087	rs10650388	C	CGT	2265.73	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:9,72:0.89:81
chr12	40708922	rs1427266	C	T	2407.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr12	40709185	rs721713	A	G	8160.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:1,295:1.00:296
chr12	40713759	rs1896252	T	C	619.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr12	40713834	rs1427263	C	A	1549.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.19;SOR=0.877;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr12	40713873	rs11176013	A	G	1636.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.98;SOR=0.724;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr12	40714009	rs11564205	A	G	781.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr12	40714785	rs10878368	A	T	9417.77	.	AC=2;AF=1.00;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	1/1:0,363:1.00:363
chr12	40715013	rs7307276	T	A	1399.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:1,47:0.98:48
chr12	40716015	rs7137665	C	T	7787.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr12	40716037	.	T	TA	1042.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.209;ClippingRankSum=0.000;DP=359;ExcessHet=3.0103;FS=1.022;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.000;QD=3.27;ReadPosRankSum=-1.195;SOR=0.769;set=HC	GT:AD:AF:DP	0/1:217,102:0.32:319
chr12	40716260	rs10878371	T	C	5366.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr12	40753044	rs111612315	C	CT	655.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.30;QD=21.15;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr12	40753303	rs3789330	A	G	556.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr12	40757114	rs10626458	A	ACATG	1304.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr12	40757186	rs11317573	AT	A	2398.73	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:3,114:0.97:117
chr12	40758652	rs3761863	T	C	5501.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr12	40761007	rs3789328	A	G	887.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr12	40761358	rs4768238	A	G	1028.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr12	40761663	rs66737902	T	C	594.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr12	40787385	rs7968721	C	A	1119.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr12	40802150	rs1019709	G	A	7618.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr12	40815548	rs6581732	T	A	485.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr12	40821176	rs7955308	G	A	11920.77	.	AC=2;AF=1.00;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	1/1:0,429:1.00:429
chr12	40822012	rs7960062	C	T	1209.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr12	40825487	rs2114567	G	A	7670.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr12	40827479	rs2162470	T	C	2882.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr12	40829824	.	C	CA	68.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.808;ClippingRankSum=0.000;DP=122;ExcessHet=3.0103;FS=1.250;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.000;QD=0.64;ReadPosRankSum=0.566;SOR=0.927;set=HC	GT:AD:AF:DP	0/1:86,22:0.20:108
chr12	40830583	rs11564168	T	C	4063.77	.	AC=1;AF=0.500;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	0/1:157,182:0.54:339
chr12	40830599	rs201817965	CGTGTGT	C	2614.73	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:90,93:0.51:183
chr12	40832126	rs10878584	C	T	4331.77	.	AC=1;AF=0.500;AN=2;DB;DP=468;set=Intersection	GT:AD:AF:DP	0/1:253,209:0.45:462
chr12	40832161	rs11176635	T	C	2960.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:194,138:0.42:332
chr12	40834376	rs10878592	C	G	1038.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:48,44:0.48:92
chr12	40834955	rs10784618	C	A	5267.77	.	AC=1;AF=0.500;AN=2;DB;DP=499;set=Intersection	GT:AD:AF:DP	0/1:243,254:0.51:497
chr12	40835596	rs4768263	T	G	564.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:33,24:0.42:57
chr12	40835734	rs7966110	C	G	3404.77	.	AC=1;AF=0.500;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	0/1:193,170:0.47:363
chr12	40838146	rs10784620	A	T	6145.77	.	AC=1;AF=0.500;AN=2;DB;DP=566;set=Intersection	GT:AD:AF:DP	0/1:274,285:0.51:559
chr12	40838216	rs10784621	T	C	4243.77	.	AC=1;AF=0.500;AN=2;DB;DP=470;set=Intersection	GT:AD:AF:DP	0/1:251,215:0.46:466
chr12	40839467	rs7972395	A	G	2428.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:145,117:0.45:262
chr12	40839521	rs1346307	T	C	1145.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:52,45:0.46:97
chr12	40840325	rs10878597	T	C	5505.77	.	AC=1;AF=0.500;AN=2;DB;DP=565;set=Intersection	GT:AD:AF:DP	0/1:292,267:0.48:559
chr12	40841781	rs1820547	A	G	815.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr12	40842167	rs6581750	C	T	205.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:10,10:0.50:20
chr12	40844667	rs10784623	A	C	292.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:11,11:0.50:22
chr12	40852398	rs1035811	T	C	492.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.557;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.73;ReadPosRankSum=1.241;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:17,25:0.60:42
chr12	40852535	rs17128233	A	G	1046.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:94,57:0.38:151
chr12	40857214	rs10878623	T	C	3967.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr12	40857943	rs2933353	A	C	5502.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr12	40859036	rs2131202	C	T	8647.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr12	40859551	rs2131203	T	A	1239.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr12	40868767	rs1444222	A	G	2386.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:91,97:0.52:188
chr12	40868879	rs60890556	C	CA	4964.73	.	AC=1;AF=0.500;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	0/1:213,163:0.43:376
chr12	40894745	rs111256342	A	ACTGAGAATAC	6901.73	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr12	40894964	rs719228	G	T	1370.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:88,67:0.43:155
chr12	40895026	rs719227	C	T	592.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:48,30:0.38:78
chr12	40895492	.	G	GA	243.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.010;ClippingRankSum=0.000;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.750;QD=1.77;ReadPosRankSum=-0.985;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:106,32:0.23:138
chr12	40912236	rs2588399	G	T	5872.77	.	AC=1;AF=0.500;AN=2;DB;DP=628;set=Intersection	GT:AD:AF:DP	0/1:324,292:0.47:616
chr12	40914061	rs55775102	A	G	429.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:16,16:0.50:32
chr12	40914826	rs10878731	G	T	1167.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:70,53:0.43:123
chr12	40915787	rs2920821	T	C	519.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:21,21:0.50:42
chr12	40916218	.	CTTTTTTTTTTTTTTT	C	974.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.558;ClippingRankSum=0.000;DP=51;ExcessHet=3.0103;FS=4.160;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.08;ReadPosRankSum=2.038;SOR=1.758;set=HC	GT:AD:AF:DP	0/1:9,27:0.75:36
chr12	40917312	rs2920820	C	T	2268.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:109,98:0.47:207
chr12	40918345	rs1492319	G	A	297.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:19,16:0.46:35
chr12	40918902	rs2933352	T	C	3804.77	.	AC=1;AF=0.500;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	0/1:200,182:0.48:382
chr12	40920110	rs2933351	T	C	3471.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:160,159:0.50:319
chr12	40920872	rs111826232	CT	C	115.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.427;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=7.278;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.05;ReadPosRankSum=-1.723;SOR=0.783;set=HC	GT:AD:AF:DP	0/1:80,30:0.27:110
chr12	40922104	rs1444220	A	C	4853.77	.	AC=1;AF=0.500;AN=2;DB;DP=488;set=Intersection	GT:AD:AF:DP	0/1:252,232:0.48:484
chr12	40924470	rs2588403	T	C	208.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr12	40925050	rs111332615	C	T	2840.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:139,136:0.49:275
chr12	40925908	rs7139187	A	C	2893.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:131,131:0.50:262
chr12	40926493	rs4768290	C	T	3148.77	.	AC=1;AF=0.500;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	0/1:192,153:0.44:345
chr12	40927890	rs7977973	T	G	630.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:30,28:0.48:58
chr12	40928587	.	CA	C	221.87	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.116;ClippingRankSum=0.000;DP=87;ExcessHet=3.0103;FS=1.348;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.52;ReadPosRankSum=-1.029;SOR=1.197;set=HC	GT:AD:AF:DP	0/1:32,31:0.49:63
chr12	40929425	rs113734402	TA	T	286.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.291;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=3.358;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=-1.029;QD=7.35;ReadPosRankSum=-1.799;SOR=1.942;set=HC	GT:AD:AF:DP	0/1:18,21:0.54:39
chr12	40929482	rs34442007	GT	G	603.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.025;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=12.159;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.669;QD=4.37;ReadPosRankSum=1.231;SOR=1.863;set=HC	GT:AD:AF:DP	0/1:85,53:0.38:138
chr12	40930709	rs7971316	G	C	6362.77	.	AC=1;AF=0.500;AN=2;DB;DP=628;set=Intersection	GT:AD:AF:DP	0/1:313,302:0.49:615
chr12	40938944	rs7133943	C	T	1494.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:109,80:0.42:189
chr12	40941507	rs73115378	G	A	1670.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:79,82:0.51:161
chr12	40942463	rs35702138	GT	G	2443.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.833;ClippingRankSum=0.000;DB;DP=332;ExcessHet=3.0103;FS=0.571;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.882;QD=8.76;ReadPosRankSum=0.860;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:81,198:0.71:279
chr12	40943970	rs1492316	G	A	2151.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:171,102:0.37:273
chr12	40950883	rs7487017	A	G	640.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.154;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=3.304;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.78;ReadPosRankSum=0.088;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:40,33:0.45:73
chr12	40950944	rs73115401	T	G	2027.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:86,94:0.52:180
chr12	40951950	rs3751172	G	A	12165.77	.	AC=1;AF=0.500;AN=2;DB;DP=650;set=Intersection	GT:AD:AF:DP	0/1:326,321:0.50:647
chr12	40951961	rs3751173	G	C	12127.77	.	AC=1;AF=0.500;AN=2;DB;DP=628;set=Intersection	GT:AD:AF:DP	0/1:309,316:0.51:625
chr12	40952934	rs1352938	A	G	3886.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.348;ClippingRankSum=0.000;DB;DP=225;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.75;ReadPosRankSum=-1.804;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:119,100:0.46:219
chr12	40952943	rs56322620	G	A	4066.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.216;ClippingRankSum=0.000;DB;DP=240;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-1.040;QD=17.45;ReadPosRankSum=-3.256;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:122,111:0.48:233
chr12	40954299	rs141832731	T	TA	1143.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.344;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=2.802;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.77;ReadPosRankSum=-1.545;SOR=0.504;set=HC	GT:AD:AF:DP	0/1:99,70:0.41:169
chr12	40957272	rs56080664	C	A	3778.77	.	AC=1;AF=0.500;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	0/1:210,176:0.46:386
chr12	40957450	rs10083205	A	G	4500.77	.	AC=1;AF=0.500;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	0/1:211,208:0.50:419
chr12	40957461	.	T	C	3797.77	.	AC=1;AF=0.500;AN=2;DP=384;set=Intersection	GT:AD:AF:DP	0/1:184,192:0.51:376
chr12	41303825	rs2304819	A	C	1560.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:74,73:0.50:147
chr12	41312365	rs10879356	A	T	458.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:17,20:0.54:37
chr12	41318265	rs7299744	C	T	737.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:20,28:0.58:48
chr12	41330531	rs2289522	T	C	969.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:56,48:0.46:104
chr12	41330611	rs935105	T	C	3755.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:135,178:0.57:313
chr12	41331612	rs1442193	T	C	493.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr12	41333049	rs74449088	T	TA	765.73	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:24,29:0.55:53
chr12	41333391	rs34686634	AT	A	385.73	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:19,27:0.59:46
chr12	41337435	rs1056019	C	T	4468.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr12	41374697	rs10784981	C	A	912.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:70,49:0.41:119
chr12	41423040	rs181426756	A	T	1832.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:117,92:0.44:209
chr12	41582590	rs10879830	G	C	1175.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:35,34:0.49:69
chr12	41582603	rs10879831	G	C	1041.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:26,26:0.50:52
chr12	41588124	rs3847980	A	G	334.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:10,14:0.58:24
chr12	41946315	rs11301675	TA	T	105.73	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:9,11:0.55:20
chr12	41946453	rs285585	T	C	3846.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr12	41957568	rs157971	C	T	645.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:18,28:0.61:46
chr12	41961535	rs12310084	A	G	1087.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:46,47:0.51:93
chr12	41961745	rs17582686	T	C	1725.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:82,80:0.49:162
chr12	41966306	rs12298745	G	A	2360.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:147,111:0.43:258
chr12	42481803	rs824722	G	A	114.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:11,7:0.39:18
chr12	42499538	rs61942483	TT	AC	1623.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;JOINED;set=Intersection	GT:AD:AF:DP	0/1:50,43:0.46:93
chr12	42503467	rs7312933	T	C	601.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.976;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.60;ReadPosRankSum=1.499;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:36,34:0.49:70
chr12	42503505	rs824695	T	A	1560.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:1,61:0.98:62
chr12	42513127	rs7977365	G	A	754.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:15,29:0.66:44
chr12	42538383	.	A	G	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.233;ClippingRankSum=0.000;DP=80;ExcessHet=3.0103;FS=3.514;MLEAC=1;MLEAF=0.500;MQ=59.31;MQRankSum=-4.533;QD=0.50;ReadPosRankSum=0.181;SOR=1.440;set=HC	GT:AD:AF:DP	0/1:72,7:0.09:79
chr12	42538386	.	G	A	45.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.480;ClippingRankSum=0.000;DP=80;ExcessHet=3.0103;FS=3.475;MLEAC=1;MLEAF=0.500;MQ=59.58;MQRankSum=-4.565;QD=0.57;ReadPosRankSum=0.136;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:73,7:0.09:80
chr12	42538395	.	C	G	72.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.809;ClippingRankSum=0.000;DP=69;ExcessHet=3.0103;FS=1.608;MLEAC=1;MLEAF=0.500;MQ=59.51;MQRankSum=-4.206;QD=1.05;ReadPosRankSum=-1.223;SOR=1.321;set=HC	GT:AD:AF:DP	0/1:62,7:0.10:69
chr12	42538406	.	C	T	102.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.335;ClippingRankSum=0.000;DP=59;ExcessHet=3.0103;FS=1.944;MLEAC=1;MLEAF=0.500;MQ=59.43;MQRankSum=-4.645;QD=1.74;ReadPosRankSum=-1.406;SOR=1.395;set=HC	GT:AD:AF:DP	0/1:54,5:0.08:59
chr12	42554505	rs1059360	A	G	4090.77	.	AC=1;AF=0.500;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	0/1:223,201:0.47:424
chr12	42599696	rs12370778	T	A	563.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.410;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=4.094;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.00;ReadPosRankSum=-0.343;SOR=1.314;set=HC	GT:AD:AF:DP	0/1:21,26:0.55:47
chr12	42606135	rs10880269	C	T	1039.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:31,47:0.60:78
chr12	42629550	rs7960176	T	C	811.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:43,36:0.46:79
chr12	42707437	rs3761677	C	G	204.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:20,10:0.33:30
chr12	42717724	rs199988703	G	GA	274.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.364;ClippingRankSum=0.000;DB;DP=251;ExcessHet=3.0103;FS=0.747;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=3.343;QD=1.22;ReadPosRankSum=0.376;SOR=0.768;set=HC	GT:AD:AF:DP	0/1:177,48:0.21:225
chr12	42717961	rs3747557	G	T	1065.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:136,73:0.35:209
chr12	42729891	rs7296357	T	G	1769.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:133,90:0.40:223
chr12	42768646	rs59428088	G	GT	71.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.095;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=2.222;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.60;ReadPosRankSum=0.212;SOR=0.974;set=HC	GT:AD:AF:DP	0/1:97,22:0.18:119
chr12	42778922	rs1669906	G	A	6398.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr12	42781178	rs2243465	A	T	212.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:18,10:0.36:28
chr12	42787579	rs1376931	A	G	534.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:21,22:0.51:43
chr12	42839836	rs1669885	A	C	14109.77	.	AC=2;AF=1.00;AN=2;DB;DP=530;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.08;SOR=1.924;set=HC	GT:AD:AF:DP	1/1:0,521:1.00:521
chr12	42853058	rs68074167	GT	G	1736.73	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:9,96:0.91:105
chr12	42853350	rs1043656	A	G	330.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:20,14:0.41:34
chr12	42853520	rs1043652	A	G	477.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:11,18:0.62:29
chr12	42854205	rs3747562	A	G	5302.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.620;ClippingRankSum=0.000;DB;DP=279;ExcessHet=3.0103;FS=5.669;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.35;ReadPosRankSum=-0.692;SOR=1.004;set=HC	GT:AD:AF:DP	0/1:138,136:0.50:274
chr12	42854208	rs3747563	A	G	5293.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.224;ClippingRankSum=0.000;DB;DP=287;ExcessHet=3.0103;FS=3.303;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.84;ReadPosRankSum=-0.790;SOR=0.908;set=HC	GT:AD:AF:DP	0/1:142,139:0.49:281
chr12	42859961	rs12230583	A	G	1919.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:97,90:0.48:187
chr12	42862750	rs2708062	T	G	980.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr12	43769718	rs7972295	A	G	2768.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr12	43777335	rs17093250	T	A	1700.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr12	43817445	rs6582463	C	T	586.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:20,24:0.55:44
chr12	43819298	rs10785430	G	A	5524.77	.	AC=1;AF=0.500;AN=2;DB;DP=602;set=Intersection	GT:AD:AF:DP	0/1:317,278:0.47:595
chr12	43824042	rs10880489	G	T	630.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:32,26:0.45:58
chr12	43824316	rs11182071	A	G	1982.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:82,87:0.51:169
chr12	43826277	rs201811876	T	TA	2257.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.203;ClippingRankSum=0.000;DB;DP=392;ExcessHet=3.0103;FS=2.018;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=0.000;QD=6.53;ReadPosRankSum=1.258;SOR=0.574;set=HC	GT:AD:AF:DP	0/1:178,168:0.49:346
chr12	43827506	rs10617078	AACACACAC	A,AACAC	583.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.83;QD=36.48;SOR=1.609;set=HC	GT:AD:AF:DP	1/2:0,10,6:0.62,0.38:16
chr12	43846272	rs7307955	C	T	3966.77	.	AC=1;AF=0.500;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	0/1:187,184:0.50:371
chr12	43847683	rs11182085	A	G	2075.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:100,92:0.48:192
chr12	43847929	rs11182086	C	T	1239.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:41,51:0.55:92
chr12	43847941	rs6582464	C	T	1009.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:34,43:0.56:77
chr12	43860526	rs11182088	A	G	2048.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:107,103:0.49:210
chr12	43886199	rs71091159	G	GAAAAA	243.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.537;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=7.903;MLEAC=1;MLEAF=0.500;MQ=61.50;MQRankSum=4.788;QD=6.59;ReadPosRankSum=-2.860;SOR=2.584;set=HC	GT:AD:AF:DP	0/1:27,10:0.27:37
chr12	43945603	rs275602	A	C	4607.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr12	44130123	rs113047505	GA	G	1419.73	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:59,70:0.54:129
chr12	44132250	rs10880558	T	A	739.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:36,34:0.49:70
chr12	44139805	rs11182246	A	T	495.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:26,26:0.50:52
chr12	44140080	rs59209906	C	T	85.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.497;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.53;ReadPosRankSum=-1.559;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:4,5:0.56:9
chr12	44148259	rs1057190	T	C	5204.77	.	AC=1;AF=0.500;AN=2;DB;DP=514;set=Intersection	GT:AD:AF:DP	0/1:262,247:0.49:509
chr12	44164689	rs1461567	G	A	1139.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:77,57:0.43:134
chr12	44171602	rs4251500	A	T	1598.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:62,74:0.54:136
chr12	44177354	rs4251529	G	A	255.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:15,12:0.44:27
chr12	44180295	rs4251545	G	A	1072.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:77,56:0.42:133
chr12	44192424	.	TA	T	191.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.239;ClippingRankSum=0.000;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.610;QD=1.60;ReadPosRankSum=-2.138;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:86,34:0.28:120
chr12	44194474	.	TA	T	663.73	.	AC=1;AF=0.500;AN=2;DP=39;set=Intersection	GT:AD:AF:DP	0/1:15,20:0.57:35
chr12	44196407	rs10880568	T	C	968.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr12	44338153	rs6582491	T	A	4747.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:1,180:0.99:181
chr12	44902573	rs1377002	A	G	451.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:14,20:0.59:34
chr12	44926334	rs2270479	T	A	1785.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:95,83:0.47:178
chr12	45004796	rs2305449	C	T	1581.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:48,64:0.57:112
chr12	45004824	rs2305448	G	A	1013.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:32,41:0.56:73
chr12	45059237	rs2290353	T	G	2934.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:133,129:0.49:262
chr12	45170006	rs4768572	T	C	8458.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr12	45621906	rs57127691	GT	G	408.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.681;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=3.452;MLEAC=1;MLEAF=0.500;MQ=59.79;MQRankSum=0.000;QD=8.01;ReadPosRankSum=0.597;SOR=0.250;set=HC	GT:AD:AF:DP	0/1:12,39:0.76:51
chr12	45664213	rs10748415	G	A	4379.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr12	45695735	rs4140756	C	A	9059.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr12	45771901	.	G	GT	417.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.659;ClippingRankSum=0.000;DP=165;ExcessHet=3.0103;FS=1.720;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.414;QD=3.29;ReadPosRankSum=0.142;SOR=0.936;set=HC	GT:AD:AF:DP	0/1:84,43:0.34:127
chr12	45772004	rs144076281	A	C	694.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:23,27:0.54:50
chr12	46287170	rs138252675	TTC	T	847.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.731;ClippingRankSum=0.000;DB;DP=304;ExcessHet=3.0103;FS=1.289;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.03;ReadPosRankSum=0.098;SOR=0.559;set=HC	GT:AD:AF:DP	0/1:227,53:0.19:280
chr12	46321514	rs7315731	A	T	4630.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr12	46322436	rs118114840	C	T	4601.77	.	AC=1;AF=0.500;AN=2;DB;DP=480;set=Intersection	GT:AD:AF:DP	0/1:258,220:0.46:478
chr12	46322449	rs10880868	C	T	5688.77	.	AC=1;AF=0.500;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	0/1:204,257:0.56:461
chr12	46322654	.	T	TA	88.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.634;ClippingRankSum=0.000;DP=197;ExcessHet=3.0103;FS=1.850;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.53;ReadPosRankSum=-2.110;SOR=0.924;set=HC	GT:AD:AF:DP	0/1:136,33:0.20:169
chr12	46367903	rs10880879	T	C	3192.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr12	46367939	rs11183268	G	T	5002.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr12	46385815	rs11574952	C	T	7052.77	.	AC=1;AF=0.500;AN=2;DB;DP=659;set=Intersection	GT:AD:AF:DP	0/1:324,331:0.51:655
chr12	46385848	rs12828693	C	T	4441.77	.	AC=1;AF=0.500;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	0/1:258,216:0.46:474
chr12	46582540	rs1045278	T	A	121.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:38,13:0.25:51
chr12	46591906	rs7954255	T	C	1120.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:49,54:0.52:103
chr12	46601056	rs2289768	C	T	1831.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:89,88:0.50:177
chr12	46633328	rs7959095	G	T	427.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:15,18:0.55:33
chr12	46662485	rs2242355	G	C	1524.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:95,65:0.41:160
chr12	46755112	rs7961994	A	T	674.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:24,27:0.53:51
chr12	46758494	rs2307061	A	G	3817.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:156,181:0.54:337
chr12	46759017	rs7968173	T	A	2334.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:113,105:0.48:218
chr12	46759057	rs12307969	G	C	1181.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:51,48:0.48:99
chr12	46761127	rs10880959	G	A	1464.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:77,71:0.48:148
chr12	47159123	rs4768756	A	G	2883.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr12	47162938	rs2216433	T	G	3170.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr12	47168898	rs180414	G	A	8122.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr12	47170621	rs12316767	C	A	4090.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr12	47173830	rs2287471	G	A	2920.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr12	47182279	rs2302855	C	T	6551.77	.	AC=1;AF=0.500;AN=2;DB;DP=731;set=Intersection	GT:AD:AF:DP	0/1:403,320:0.44:723
chr12	47182405	rs144734760	A	AAC	4670.73	.	AC=1;AF=0.500;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	0/1:184,156:0.46:340
chr12	47186770	rs2429467	C	T	9333.77	.	AC=1;AF=0.500;AN=2;DB;DP=908;set=Intersection	GT:AD:AF:DP	0/1:459,434:0.49:893
chr12	47581629	rs832733	T	C	1445.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:55,68:0.55:123
chr12	47758032	rs215383	A	G	1665.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:88,77:0.47:165
chr12	47761313	rs11419253	A	AT	2253.73	.	AC=1;AF=0.500;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	0/1:157,149:0.49:306
chr12	48063832	.	T	G	940.77	.	AC=1;AF=0.500;AN=2;DP=87;set=Intersection	GT:AD:AF:DP	0/1:46,40:0.47:86
chr12	48081539	rs7136422	C	T	1280.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:56,51:0.48:107
chr12	48081637	rs7136561	C	T	5228.77	.	AC=1;AF=0.500;AN=2;DB;DP=552;set=Intersection	GT:AD:AF:DP	0/1:287,253:0.47:540
chr12	48104746	rs1235152	G	C	2004.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr12	48106488	rs1234820	G	T	985.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:30,40:0.57:70
chr12	48110325	rs1235153	A	G	1377.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr12	48110608	rs2524318	A	G	670.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.92;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr12	48110608	.	ACATCG	GCATCA,GCATCG	175	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.4;FR=0.5000,0.5000;HP=1;HapScore=3;MGOF=22;MMLQ=24;MQ=60.0;NF=9,14;NR=1,1;PP=175,46;QD=22.8467874862;SC=AAAAGTCGAGACATCGAAAGA;SbPval=0.49;Source=Platypus;TC=15;TCF=14;TCR=1;TR=10,15;WE=48110621;WS=48110598;set=Platypus	GT:AF:DP	0/1:0.67:15
chr12	48110613	rs2524317	G	A	284.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.130;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.24;ReadPosRankSum=2.023;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:8,12:0.60:20
chr12	48131728	rs2072117	G	A	1088.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:73,56:0.43:129
chr12	48132451	rs2072116	T	C	6448.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr12	48132889	rs2074535	G	A	772.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:41,38:0.48:79
chr12	48134214	rs10875687	G	C	3380.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:185,171:0.48:356
chr12	48134360	rs10875688	G	T	1647.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:118,80:0.40:198
chr12	48134381	rs35703007	CG	C	2197.73	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:121,91:0.43:212
chr12	48134695	rs2074533	T	C	4437.77	.	AC=1;AF=0.500;AN=2;DB;DP=547;set=Intersection	GT:AD:AF:DP	0/1:321,224:0.41:545
chr12	48141798	rs56199059	T	C	1476.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:88,74:0.46:162
chr12	48142418	rs757281	C	G	5183.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr12	48143095	rs149061709	G	GCTCTGGT	22858.73	.	AC=2;AF=1.00;AN=2;DB;DP=497;set=Intersection	GT:AD:AF:DP	1/1:0,483:1.00:483
chr12	48143360	rs757280	T	C	2471.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr12	48144243	rs757279	A	C	2483.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr12	48144925	rs2016123	T	C	11003.77	.	AC=2;AF=1.00;AN=2;DB;DP=414;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.84;SOR=0.872;set=HC	GT:AD:AF:DP	1/1:0,410:1.00:410
chr12	48145368	rs2072115	A	G	4416.77	.	AC=1;AF=0.500;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	0/1:208,210:0.50:418
chr12	48178127	rs3192737	A	G	5737.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr12	48178465	rs3815138	T	C	8761.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:0,334:1.00:334
chr12	48178513	rs7972177	A	G	3028.77	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:188,155:0.45:343
chr12	48178604	rs11168236	T	C	1345.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:89,72:0.45:161
chr12	48181778	rs6580637	T	C	6253.77	.	AC=1;AF=0.500;AN=2;DB;DP=594;set=Intersection	GT:AD:AF:DP	0/1:298,286:0.49:584
chr12	48185167	rs11832133	G	C	4028.77	.	AC=1;AF=0.500;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	0/1:223,194:0.47:417
chr12	48195939	rs2525051	G	C	14823.77	.	AC=1;AF=0.500;AN=2;DB;DP=1475;set=Intersection	GT:AD:AF:DP	0/1:739,724:0.49:1463
chr12	48238757	rs731236	A	G	1841.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:97,81:0.46:178
chr12	48238837	rs7975232	C	A	599.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:38,36:0.49:74
chr12	48240126	rs187843998	A	G	3036.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:183,150:0.45:333
chr12	48249259	rs11168265	C	T	698.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:25,30:0.55:55
chr12	48251533	rs11168266	C	T	1309.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:58,59:0.50:117
chr12	48259126	rs12717991	C	T	1240.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:54,52:0.49:106
chr12	48272895	rs2228570	A	G	2239.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:112,112:0.50:224
chr12	48295118	rs138718965	G	A	10303.77	.	AC=1;AF=0.500;AN=2;DB;DP=945;set=Intersection	GT:AD:AF:DP	0/1:452,484:0.52:936
chr12	48358279	rs11609253	C	A	687.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:17,30:0.64:47
chr12	48359676	rs35000511	G	T	2945.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:164,146:0.47:310
chr12	48360620	rs2286024	A	G	648.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:21,29:0.58:50
chr12	48360947	.	T	TA	937.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.353;ClippingRankSum=0.000;DP=490;ExcessHet=3.0103;FS=0.958;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.15;ReadPosRankSum=1.582;SOR=0.611;set=HC	GT:AD:AF:DP	0/1:323,114:0.26:437
chr12	48367054	rs41272777	G	A	1196.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:45,53:0.54:98
chr12	48368128	rs12721425	G	C	1686.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:90,73:0.45:163
chr12	48368296	rs12721426	C	T	393.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:16,15:0.48:31
chr12	48368406	rs41272763	AAG	A	2053.73	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:87,64:0.42:151
chr12	48368541	rs12721427	C	T	4217.77	.	AC=1;AF=0.500;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	0/1:232,212:0.48:444
chr12	48369025	rs56196515	T	G	149.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:16,7:0.30:23
chr12	48371045	rs41272749	A	G	5101.77	.	AC=1;AF=0.500;AN=2;DB;DP=468;set=Intersection	GT:AD:AF:DP	0/1:221,232:0.51:453
chr12	48371595	rs1793949	G	A	3923.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:136,168:0.55:304
chr12	48373181	rs12368284	A	G	1655.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:87,85:0.49:172
chr12	48373718	rs11443755	A	AC	2627.73	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:2,85:0.98:87
chr12	48374011	rs57444859	A	G	3258.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:97,93:0.49:190
chr12	48374028	rs56387272	T	C	2761.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:82,71:0.46:153
chr12	48374513	rs1635554	A	G	4454.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr12	48374616	rs12300271	T	C	1391.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:112,73:0.39:185
chr12	48374826	rs2276458	T	G	198.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:12,10:0.45:22
chr12	48375258	rs79231959	G	T	662.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:27,35:0.56:62
chr12	48375437	rs41263865	C	CT	2090.73	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:51,67:0.57:118
chr12	48375451	rs75703301	G	A	1597.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:66,78:0.54:144
chr12	48375475	rs1793937	C	G	1769.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:101,84:0.45:185
chr12	48375568	rs1635553	A	G	5570.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;MQ=60.05;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr12	48375668	rs41263861	C	A	1599.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:70,69:0.50:139
chr12	48375822	rs79896080	C	T	4138.77	.	AC=1;AF=0.500;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	0/1:197,203:0.51:400
chr12	48375965	rs2276457	C	T	5485.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.967;ClippingRankSum=0.000;DB;DP=308;ExcessHet=3.0103;FS=1.389;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.99;ReadPosRankSum=1.049;SOR=0.795;set=HC	GT:AD:AF:DP	0/1:153,152:0.50:305
chr12	48375975	rs2276456	A	G	5021.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.984;ClippingRankSum=0.000;DB;DP=261;ExcessHet=3.0103;FS=1.535;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.39;ReadPosRankSum=0.695;SOR=0.816;set=HC	GT:AD:AF:DP	0/1:130,129:0.50:259
chr12	48376076	rs77813711	G	A	1187.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:42,47:0.53:89
chr12	48376137	rs2276455	G	A	1401.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:64,60:0.48:124
chr12	48376291	rs2276454	G	A	3095.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:138,146:0.51:284
chr12	48376443	rs3842680	A	AC	6180.73	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr12	48376447	rs3829737	A	G	6315.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr12	48376503	rs3829736	C	T	9613.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:2,330:0.99:332
chr12	48376530	rs11168337	C	A	13254.77	.	AC=2;AF=1.00;AN=2;DB;DP=484;set=Intersection	GT:AD:AF:DP	1/1:0,481:1.00:481
chr12	48376574	rs55967487	G	A	7282.77	.	AC=1;AF=0.500;AN=2;DB;DP=774;set=Intersection	GT:AD:AF:DP	0/1:398,369:0.48:767
chr12	48376869	rs17801742	T	C	5918.77	.	AC=1;AF=0.500;AN=2;DB;DP=532;set=Intersection	GT:AD:AF:DP	0/1:254,264:0.51:518
chr12	48377635	rs10219510	A	G	954.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:42,41:0.49:83
chr12	48377718	rs56010633	T	C	456.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:21,20:0.49:41
chr12	48377756	rs55744743	T	C	457.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:32,20:0.38:52
chr12	48377947	rs41263845	G	T	1589.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:119,83:0.41:202
chr12	48377970	rs1635550	A	G	5115.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr12	48378380	rs41317939	A	G	2807.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:142,136:0.49:278
chr12	48378900	rs41317933	A	G	2066.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:70,91:0.57:161
chr12	48378933	rs56006800	C	G	1173.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:52,50:0.49:102
chr12	48379408	rs41317929	C	T	3814.77	.	AC=1;AF=0.500;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	0/1:166,179:0.52:345
chr12	48379810	rs3829734	G	A	2192.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr12	48379961	rs1635547	A	C	5243.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.20;SOR=2.107;set=HC	GT:AD:AF:DP	1/1:0,116:1.00:116
chr12	48379964	rs1635546	A	G	5373.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.99;SOR=2.030;set=HC	GT:AD:AF:DP	1/1:0,125:1.00:125
chr12	48380031	rs1635544	A	G	7476.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr12	48380682	rs10875714	G	A	7095.77	.	AC=1;AF=0.500;AN=2;DB;DP=674;set=Intersection	GT:AD:AF:DP	0/1:337,331:0.50:668
chr12	48383235	rs1635537	A	G	1730.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr12	48386553	rs1635534	A	G	4207.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr12	48386577	rs1793915	G	T	5942.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr12	48387052	rs1793912	A	C	2262.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.14;SOR=3.352;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr12	48387057	rs1793911	G	C	2455.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.62;SOR=3.296;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr12	48388102	rs55921916	G	A	2154.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:74,101:0.58:175
chr12	48388995	rs3216168	TC	T	2005.73	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:53,73:0.58:126
chr12	48389232	rs55698101	G	C	1376.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:58,61:0.51:119
chr12	48389643	rs1034762	A	C	11931.77	.	AC=2;AF=1.00;AN=2;DB;DP=444;set=Intersection	GT:AD:AF:DP	1/1:0,437:1.00:437
chr12	48390585	rs2213163	T	A	528.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:25,22:0.47:47
chr12	48391416	rs3737548	G	T	3108.77	.	AC=1;AF=0.500;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	0/1:205,156:0.43:361
chr12	48392433	rs1793958	A	G	1407.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:71,61:0.46:132
chr12	48398002	rs3803184	G	C	5759.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:2,220:0.99:222
chr12	48398080	rs3803183	T	A	3853.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr12	48413789	rs113940474	A	ATATTGT	7303.73	.	AC=1;AF=0.500;AN=2;DB;DP=472;set=Intersection	GT:AD:AF:DP	0/1:278,188:0.40:466
chr12	48413875	rs17122567	G	A	8211.77	.	AC=1;AF=0.500;AN=2;DB;DP=848;set=Intersection	GT:AD:AF:DP	0/1:424,411:0.49:835
chr12	48413944	rs7299135	C	T	7863.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.623;ClippingRankSum=0.000;DB;DP=504;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=-1.094;QD=15.89;ReadPosRankSum=-0.927;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:276,219:0.44:495
chr12	48413950	rs28459711	A	C	7604.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.344;ClippingRankSum=0.000;DB;DP=458;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=-1.098;QD=16.94;ReadPosRankSum=-1.028;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:250,199:0.44:449
chr12	48413979	rs7299364	G	T	2453.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.056;ClippingRankSum=0.000;DB;DP=302;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=-1.000;QD=8.37;ReadPosRankSum=0.343;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:170,123:0.42:293
chr12	48414058	rs7299271	C	T	173.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:30,10:0.25:40
chr12	48441748	rs12297820	G	A	8512.77	.	AC=1;AF=0.500;AN=2;DB;DP=946;set=Intersection	GT:AD:AF:DP	0/1:500,433:0.46:933
chr12	48441920	rs113645512	G	GT	1345.73	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:82,69:0.46:151
chr12	48465559	rs138171426	TC	T	866.73	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:36,31:0.46:67
chr12	48468588	rs59901073	C	CA	363.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.386;ClippingRankSum=0.000;DB;DP=212;ExcessHet=3.0103;FS=0.745;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.05;ReadPosRankSum=0.827;SOR=0.768;set=HC	GT:AD:AF:DP	0/1:133,44:0.25:177
chr12	48468652	rs4258439	A	G	1906.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr12	48477422	rs886588	A	G	5947.77	.	AC=1;AF=0.500;AN=2;DB;DP=574;set=Intersection	GT:AD:AF:DP	0/1:286,281:0.50:567
chr12	48490243	rs63235460	AT	A	205.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.444;ClippingRankSum=0.000;DB;DP=234;ExcessHet=3.0103;FS=4.457;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.768;QD=1.14;ReadPosRankSum=-1.928;SOR=0.317;set=HC	GT:AD:AF:DP	0/1:135,46:0.25:181
chr12	48499131	rs2408955	G	T	1557.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:73,74:0.50:147
chr12	48499931	rs4760619	A	T	2637.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:131,139:0.51:270
chr12	48502100	rs725454	A	G	871.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:41,39:0.49:80
chr12	48512285	rs4760682	C	A	5108.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:1,186:0.99:187
chr12	48512331	rs11168414	C	T	1847.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:89,85:0.49:174
chr12	48512521	rs11168415	A	C	709.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr12	48516464	rs2269935	G	T	635.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:40,30:0.43:70
chr12	48525861	rs10875747	A	G	3661.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:164,167:0.50:331
chr12	48526659	rs2228501	G	A	2602.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:117,121:0.51:238
chr12	48526712	rs2228500	G	A	4474.77	.	AC=1;AF=0.500;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	0/1:239,217:0.48:456
chr12	48526892	rs41291961	G	A	2708.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:104,118:0.53:222
chr12	48526969	rs55682541	T	G	1273.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:55,49:0.47:104
chr12	48527059	rs2269933	G	A	5104.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr12	48534814	rs34700912	A	AG	1669.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr12	48536809	.	T	C	532.77	.	AC=1;AF=0.500;AN=2;DP=47;set=Intersection	GT:AD:AF:DP	0/1:22,23:0.51:45
chr12	48537624	rs4075913	A	G	18142.77	.	AC=2;AF=1.00;AN=2;DB;DP=528;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.16;SOR=0.807;set=HC	GT:AD:AF:DP	1/1:0,516:1.00:516
chr12	48537624	.	ATGAAG	GTGAAC,GTGAAG	2962	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.44;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=3;MMLQ=27;MQ=60.0;NF=68,161;NR=79,188;PP=2407,2962;QD=16.7378766997;SC=TTGTTCCTAAATGAAGAAGAA;SbPval=0.52;Source=Platypus;TC=350;TCF=161;TCR=189;TR=147,349;WE=48537637;WS=48537614;set=Platypus	GT:AF:DP	0/1:0.42:350
chr12	48537629	rs4075914	G	C	4818.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.602;ClippingRankSum=0.000;DB;DP=513;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.62;ReadPosRankSum=-0.563;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:266,235:0.47:501
chr12	48538979	rs11168427	A	G	4185.77	.	AC=1;AF=0.500;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	0/1:190,208:0.52:398
chr12	48539183	.	C	CT	236.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.085;ClippingRankSum=0.000;DP=60;ExcessHet=3.0103;FS=4.987;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=1.251;QD=4.93;ReadPosRankSum=0.840;SOR=1.644;set=HC	GT:AD:AF:DP	0/1:26,22:0.46:48
chr12	48539335	rs202008060	A	G	2114.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:175,115:0.40:290
chr12	48543584	rs3936179	G	C	3516.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:172,159:0.48:331
chr12	48543978	rs61918826	T	C	1653.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:83,82:0.50:165
chr12	48545245	rs56288528	A	G	868.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:25,35:0.58:60
chr12	48545553	rs10783230	G	T	5563.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr12	48545630	rs10875750	C	T	629.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:32,27:0.46:59
chr12	48577976	rs149687484	C	T	3921.77	.	AC=1;AF=0.500;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	0/1:226,187:0.45:413
chr12	48578325	rs10783231	A	C	3758.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.103;ClippingRankSum=0.000;DB;DP=385;ExcessHet=3.0103;FS=3.871;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.94;ReadPosRankSum=1.089;SOR=0.592;set=HC	GT:AD:AF:DP	0/1:197,181:0.48:378
chr12	48596118	rs78137938	C	T	220.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:19,10:0.34:29
chr12	48596241	rs11168459	A	G	1851.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:60,79:0.57:139
chr12	48596254	rs11830378	A	C	1409.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.291;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=3.885;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.34;ReadPosRankSum=0.192;SOR=1.029;set=HC	GT:AD:AF:DP	0/1:81,70:0.46:151
chr12	48596484	rs75413005	A	T	2114.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:86,96:0.53:182
chr12	48596546	rs75531856	C	T	2046.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:103,95:0.48:198
chr12	48596579	rs17224674	C	T	2164.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:130,104:0.44:234
chr12	48596641	rs75539159	A	G	2895.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:174,147:0.46:321
chr12	48596890	rs17823193	G	A	2771.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:130,127:0.49:257
chr12	48597053	rs17122812	A	G	1395.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:85,70:0.45:155
chr12	48597064	rs17224828	A	G	1538.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:69,74:0.52:143
chr12	48597094	.	G	A	2430.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.721;ClippingRankSum=0.000;DP=126;ExcessHet=3.0103;FS=3.326;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.45;ReadPosRankSum=1.365;SOR=1.021;set=HC	GT:AD:AF:DP	0/1:62,63:0.50:125
chr12	48597094	.	GGA	AGG	1673	.	AC=1;AF=0.500;AN=2;BRF=0.37;FR=0.5000;HP=1;HapScore=2;MGOF=19;MMLQ=26;MQ=60.0;NF=16;NR=32;PP=1673;QD=35.9680807263;SC=TGTTTGAGGAGGAAAGATGAT;SbPval=0.63;Source=Platypus;TC=88;TCF=31;TCR=57;TR=48;WE=48597104;WS=48597084;set=Platypus	GT:AD:AF:DP	1/0:40,48:0.55:88
chr12	48597096	rs78254156	A	G	2430.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.073;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=3.326;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.45;ReadPosRankSum=1.018;SOR=1.021;set=HC	GT:AD:AF:DP	0/1:62,63:0.50:125
chr12	48722899	rs192752762	GG	TT	1029.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;JOINED;set=Intersection	GT:AD:AF:DP	0/1:38,28:0.42:66
chr12	48723142	rs117292373	C	T	4212.77	.	AC=1;AF=0.500;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	0/1:172,182:0.51:354
chr12	48723595	rs1471997	G	A	1426.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:63,63:0.50:126
chr12	48738555	rs34591795	GA	G	1128.73	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr12	48740879	rs10875799	C	A	72.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.790;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.16;ReadPosRankSum=-0.921;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:18,5:0.22:23
chr12	48741219	rs901962	A	T	1433.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr12	48877056	rs7972785	T	C	4571.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr12	48879951	rs11168599	T	G	5538.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr12	48888594	rs11458	C	T	13853.77	.	AC=2;AF=1.00;AN=2;DB;DP=526;set=Intersection	GT:AD:AF:DP	1/1:2,515:1.00:517
chr12	48888689	rs9268	C	G	10982.77	.	AC=2;AF=1.00;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	1/1:0,404:1.00:404
chr12	48888763	rs2705132	A	G	4458.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr12	48919556	rs2731073	A	G	11945.77	.	AC=2;AF=1.00;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	1/1:1,450:1.00:451
chr12	48919659	rs4075258	TG	CA	15246.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,342:1.00:342
chr12	48919796	rs12425460	C	T	9492.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:0,349:1.00:349
chr12	48921533	rs7299323	C	T	921.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr12	48953504	rs11168637	G	A	855.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr12	48954040	rs1807757	A	G	6501.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:3,243:0.99:246
chr12	48954225	rs7312017	G	C	16244.77	.	AC=2;AF=1.00;AN=2;DB;DP=612;set=Intersection	GT:AD:AF:DP	1/1:0,597:1.00:597
chr12	48962869	rs2232566	A	G	1209.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:85,64:0.43:149
chr12	49048738	rs3741628	G	T	10306.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	1/1:0,380:1.00:380
chr12	49048985	rs6580690	G	A	2623.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr12	49050393	rs149545016	TA	T	525.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.597;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=6.559;MLEAC=1;MLEAF=0.500;MQ=60.36;MQRankSum=2.848;QD=3.25;ReadPosRankSum=0.478;SOR=0.242;set=HC	GT:AD:AF:DP	0/1:87,75:0.46:162
chr12	49054491	rs3741629	G	C	561.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr12	49065727	rs7303113	T	C	9889.77	.	AC=2;AF=1.00;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	1/1:2,384:0.99:386
chr12	49073358	rs3741630	A	T	1840.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr12	49073721	rs61942051	A	G	904.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr12	49075983	rs61942052	CT	GG	4203.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr12	49076036	rs10783277	T	C	1255.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr12	49086963	rs3741632	G	A	6320.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr12	49087656	rs3013	G	C	16814.77	.	AC=2;AF=1.00;AN=2;DB;DP=635;set=Intersection	GT:AD:AF:DP	1/1:1,622:1.00:623
chr12	49091972	rs11420004	G	GA	596.19	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.260;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=1.547;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=0.869;QD=11.47;ReadPosRankSum=1.251;SOR=1.244;set=HC	GT:AD:AF:DP	0/1:10,42:0.81:52
chr12	49093729	rs7308699	C	T	1072.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr12	49108488	rs7138930	C	T	2670.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr12	49110223	rs11168699	C	A	3705.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.65;SOR=3.126;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr12	49110223	.	CAC	AAA	1510	.	AC=2;AF=1.00;AN=2;BRF=0.34;FR=1.0000;HP=6;HapScore=1;MGOF=16;MMLQ=26;MQ=59.85;NF=58;NR=9;PP=1510;QD=23.3353414159;SC=TCGTCCCCCCCACAGAGCCTG;SbPval=0.46;Source=Platypus;TC=72;TCF=63;TCR=9;TR=67;WE=49110233;WS=49110213;set=Platypus	GT:AD:AF:DP	1/1:5,67:0.93:72
chr12	49110225	rs11168700	C	A	3705.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.60;SOR=3.030;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr12	49110248	rs1110432	G	A	3833.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr12	49167222	rs17123331	G	C	3373.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:140,151:0.52:291
chr12	49218171	rs2070615	A	G	3163.77	.	AC=1;AF=0.500;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	0/1:195,163:0.46:358
chr12	49218810	rs11379348	G	GT	2157.73	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:85,85:0.50:170
chr12	49219569	rs2453469	A	G	3220.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:140,144:0.51:284
chr12	49221622	rs1045340	G	A	24911.77	.	AC=2;AF=1.00;AN=2;DB;DP=950;set=Intersection	GT:AD:AF:DP	1/1:0,943:1.00:943
chr12	49228077	rs2453473	G	C	1720.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:81,78:0.49:159
chr12	49230035	rs1057908	T	G	4090.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr12	49237652	rs2446993	G	A	1248.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:52,56:0.52:108
chr12	49238024	rs2446994	G	A	981.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:35,37:0.51:72
chr12	49255798	rs1565933	G	C	2637.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:117,125:0.52:242
chr12	49259194	rs2453489	T	G	1606.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr12	49297720	rs4018506	A	AAAAT	497.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.33;QD=41.48;SOR=2.670;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr12	49298059	rs3809147	G	A	1472.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr12	49308284	rs10747556	A	G	10888.77	.	AC=2;AF=1.00;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	1/1:2,412:1.00:414
chr12	49310724	rs10875891	GA	AG	9177.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr12	49312432	rs10783294	C	T	724.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr12	49312593	rs10875893	A	G	5591.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr12	49314862	rs10875894	C	A	3763.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr12	49314994	rs4760600	A	G	7139.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr12	49315300	rs138566110	A	AT	709.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.583;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=0.000;QD=7.97;ReadPosRankSum=-0.985;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:31,58:0.65:89
chr12	49318546	rs2293449	G	A	1180.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr12	49319036	rs12829682	A	C	31558.77	.	AC=2;AF=1.00;AN=2;DB;DP=1177;set=Intersection	GT:AD:AF:DP	1/1:2,1158:1.00:1160
chr12	49319270	rs2272312	C	T	2110.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr12	49325142	rs11168794	G	A	1720.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr12	49332092	rs1054376	G	A	931.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr12	49332366	rs4760666	C	T	5842.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr12	49333896	rs5798094	G	GA	10791.73	.	AC=2;AF=1.00;AN=2;DB;DP=479;set=Intersection	GT:AD:AF:DP	1/1:0,455:1.00:455
chr12	49334044	rs708242	G	C	3018.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr12	49334762	rs12122	G	C	5480.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr12	49334982	rs10747557	G	C	3143.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr12	49359989	rs1051886	G	A	17307.77	.	AC=2;AF=1.00;AN=2;DB;DP=649;set=Intersection	GT:AD:AF:DP	1/1:0,630:1.00:630
chr12	49362779	rs833834	T	G	3367.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr12	49434074	rs10747559	C	A	2129.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:103,104:0.50:207
chr12	49439659	rs833818	C	T	3209.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr12	49460882	rs10715716	CT	C	96.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.108;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=7.988;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.073;QD=1.86;ReadPosRankSum=-0.078;SOR=2.237;set=HC	GT:AD:AF:DP	0/1:32,20:0.38:52
chr12	49488413	.	T	C	862.77	.	AC=1;AF=0.500;AN=2;DP=74;set=Intersection	GT:AD:AF:DP	0/1:33,36:0.52:69
chr12	49667103	rs9668136	A	T	3038.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr12	49863325	.	T	TAA	56.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.879;ClippingRankSum=0.000;DP=31;ExcessHet=3.0103;FS=4.771;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.34;ReadPosRankSum=-0.554;SOR=2.030;set=HC	GT:AD:AF:DP	0/1:11,6:0.35:17
chr12	49893815	.	CT	C	113.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.691;ClippingRankSum=0.000;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.69;ReadPosRankSum=-1.048;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:132,33:0.20:165
chr12	49937813	rs1150057	A	G	13244.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.117;ClippingRankSum=0.000;DB;DP=513;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.49;ReadPosRankSum=-1.026;SOR=0.519;set=HC	GT:AD:AF:DP	1/1:3,497:0.99:500
chr12	49943840	rs2278070	C	T	650.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.557;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=4.917;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.86;ReadPosRankSum=2.038;SOR=0.317;set=HC	GT:AD:AF:DP	0/1:28,38:0.58:66
chr12	49948105	rs3815832	A	G	1223.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:62,57:0.48:119
chr12	49950408	rs56743994	G	A	2641.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:150,122:0.45:272
chr12	49951232	rs2241418	T	C	4107.77	.	AC=1;AF=0.500;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	0/1:263,188:0.42:451
chr12	49951377	rs59261129	C	T	6251.77	.	AC=1;AF=0.500;AN=2;DB;DP=588;set=Intersection	GT:AD:AF:DP	0/1:288,293:0.50:581
chr12	49952394	rs13906	C	T	509.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:21,21:0.50:42
chr12	49952668	rs2303305	G	A	6022.77	.	AC=1;AF=0.500;AN=2;DB;DP=545;set=Intersection	GT:AD:AF:DP	0/1:252,284:0.53:536
chr12	49956971	rs61331732	CCT	C	7303.73	.	AC=1;AF=0.500;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	0/1:190,197:0.51:387
chr12	49957103	rs57965817	A	G	1277.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:59,51:0.46:110
chr12	49960551	rs13066	C	A	4009.77	.	AC=1;AF=0.500;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	0/1:189,189:0.50:378
chr12	49993678	rs52824916	C	T	4874.77	.	AC=1;AF=0.500;AN=2;DB;DP=473;set=Intersection	GT:AD:AF:DP	0/1:242,226:0.48:468
chr12	50026779	rs376648517	GC	G	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.266;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=6.532;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.96;ReadPosRankSum=-1.504;SOR=0.019;set=HC	GT:AD:AF:DP	0/1:28,8:0.22:36
chr12	50037071	rs115544158	G	A	2836.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:114,136:0.54:250
chr12	50038292	rs4073998	G	A	1705.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:75,78:0.51:153
chr12	50040811	rs3841320	A	AG	5144.73	.	AC=1;AF=0.500;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	0/1:214,200:0.48:414
chr12	50043884	rs61512987	C	T	176.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:16,9:0.36:25
chr12	50047182	rs4641552	C	A	1087.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:58,49:0.46:107
chr12	50146173	rs11401668	C	CT	539.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.179;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=0.783;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.062;QD=4.28;ReadPosRankSum=-1.050;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:79,47:0.37:126
chr12	50146950	rs1012874	T	C	1715.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:54,66:0.55:120
chr12	50149347	rs17123927	A	G	1445.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:65,63:0.49:128
chr12	50149544	rs74087188	T	C	3770.77	.	AC=1;AF=0.500;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	0/1:168,174:0.51:342
chr12	50149604	rs77056500	C	T	954.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.756;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.16;ReadPosRankSum=3.949;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:63,54:0.46:117
chr12	50149620	.	C	CT	61.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.119;ClippingRankSum=0.000;DP=103;ExcessHet=3.0103;FS=5.936;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.95;ReadPosRankSum=0.095;SOR=2.090;set=HC	GT:AD:AF:DP	0/1:50,15:0.23:65
chr12	50152193	rs4563	G	A	6501.77	.	AC=1;AF=0.500;AN=2;DB;DP=669;set=Intersection	GT:AD:AF:DP	0/1:352,309:0.47:661
chr12	50152601	.	C	CT	506.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.058;ClippingRankSum=0.000;DP=181;ExcessHet=3.0103;FS=1.368;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=0.000;QD=4.92;ReadPosRankSum=-0.195;SOR=1.194;set=HC	GT:AD:AF:DP	0/1:56,47:0.46:103
chr12	50153216	rs118119231	G	A	2755.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:140,127:0.48:267
chr12	50155400	rs6580721	A	G	1164.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:48,44:0.48:92
chr12	50156640	rs10506287	T	C	4563.77	.	AC=1;AF=0.500;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	0/1:191,206:0.52:397
chr12	50174307	.	C	CA	731.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.563;ClippingRankSum=0.000;DP=685;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=2.991;QD=1.19;ReadPosRankSum=0.885;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:481,136:0.22:617
chr12	50271372	rs1248263	G	T	560.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:29,26:0.47:55
chr12	50271497	rs73116304	C	T	2133.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:129,110:0.46:239
chr12	50284583	rs113855392	A	T	3554.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:170,150:0.47:320
chr12	50290728	rs297935	A	G	305.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:24,17:0.41:41
chr12	50291735	rs297937	G	C	3532.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr12	50297670	rs706795	T	C	706.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr12	50304588	rs487165	A	T	11361.77	.	AC=2;AF=1.00;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	1/1:0,419:1.00:419
chr12	50304949	rs450798	G	A	4123.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr12	50305007	rs394119	C	T	2189.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr12	50345079	rs3782319	G	A	1777.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr12	50348078	rs426496	T	C	14630.77	.	AC=2;AF=1.00;AN=2;DB;DP=541;set=Intersection	GT:AD:AF:DP	1/1:0,540:1.00:540
chr12	50348359	rs12372344	T	C	12664.77	.	AC=2;AF=1.00;AN=2;DB;DP=453;set=Intersection	GT:AD:AF:DP	1/1:0,443:1.00:443
chr12	50348674	rs402813	C	T	1594.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr12	50349090	rs410837	A	G	1542.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr12	50349143	rs403201	C	G	3694.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr12	50349411	rs457487	C	A	1771.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr12	50349765	rs467323	C	T	1218.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr12	50355888	rs139623970	G	A	6675.77	.	AC=1;AF=0.500;AN=2;DB;DP=671;set=Intersection	GT:AD:AF:DP	0/1:331,333:0.50:664
chr12	50356174	rs139560378	TGGG	T	2757.73	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr12	50358073	rs296753	C	G	8751.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr12	50358888	rs41308104	G	A	4953.77	.	AC=1;AF=0.500;AN=2;DB;DP=473;set=Intersection	GT:AD:AF:DP	0/1:220,245:0.53:465
chr12	50368013	rs296748	C	T	5822.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr12	50386015	rs296737	C	T	11549.77	.	AC=2;AF=1.00;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	1/1:4,434:0.99:438
chr12	50391055	rs59469579	CT	C	182.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.484;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.342;QD=2.12;ReadPosRankSum=-0.842;SOR=0.866;set=HC	GT:AD:AF:DP	0/1:54,32:0.37:86
chr12	50393372	rs378943	G	T	1518.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr12	50452708	rs653576	C	G	11439.77	.	AC=2;AF=1.00;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	1/1:0,427:1.00:427
chr12	50467644	rs706792	G	T	3547.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:148,156:0.51:304
chr12	50467769	rs706793	G	A	7959.77	.	AC=1;AF=0.500;AN=2;DB;DP=807;set=Intersection	GT:AD:AF:DP	0/1:412,384:0.48:796
chr12	50471630	rs2272391	A	G	1445.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:45,51:0.53:96
chr12	50473660	rs404751	A	G	4455.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr12	50482211	rs646782	T	C	1411.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:81,60:0.43:141
chr12	50498139	rs836178	T	G	2705.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr12	50503082	rs836179	A	G	734.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:27,35:0.56:62
chr12	50503269	rs836180	C	T	2935.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:131,140:0.52:271
chr12	50517454	rs113279297	CT	C	76.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.072;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=4.071;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.84;ReadPosRankSum=0.621;SOR=1.398;set=HC	GT:AD:AF:DP	0/1:68,23:0.25:91
chr12	50526814	rs2242507	G	A	1367.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.950;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=1.250;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.66;ReadPosRankSum=-1.312;SOR=0.563;set=HC	GT:AD:AF:DP	0/1:84,74:0.47:158
chr12	50529936	rs7136570	A	G	672.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:43,29:0.40:72
chr12	50535710	rs7131794	A	G	350.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.554;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.63;ReadPosRankSum=-1.690;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:15,18:0.55:33
chr12	50535722	rs35739493	C	CA	60.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.286;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=1.513;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=1.594;QD=1.38;ReadPosRankSum=0.450;SOR=0.343;set=HC	GT:AD:AF:DP	0/1:31,13:0.30:44
chr12	50535955	rs10747571	C	T	1627.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:131,82:0.38:213
chr12	50537060	rs2277355	C	G	3048.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:170,146:0.46:316
chr12	50537815	rs7302981	A	G	2893.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:139,139:0.50:278
chr12	50538625	rs2008537	A	G	415.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.899;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.03;ReadPosRankSum=-3.019;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:49,20:0.29:69
chr12	50589674	rs71824143	CA	C	140.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.912;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=1.157;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.31;ReadPosRankSum=-0.841;SOR=0.463;set=HC	GT:AD:AF:DP	0/1:37,24:0.39:61
chr12	50599984	rs1362984	T	A	797.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:38,37:0.49:75
chr12	50642314	rs3815671	A	G	2497.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:105,108:0.51:213
chr12	50727958	.	C	CT	137.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.027;ClippingRankSum=0.000;DP=85;ExcessHet=3.0103;FS=1.440;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.15;ReadPosRankSum=1.369;SOR=0.334;set=HC	GT:AD:AF:DP	0/1:47,17:0.27:64
chr12	50744094	rs7296277	G	A	4174.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr12	50744119	rs7296291	G	A	5974.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr12	50744171	rs7312252	T	C	8729.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:0,332:1.00:332
chr12	50744753	rs10506292	T	C	9960.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:0,352:1.00:352
chr12	50746348	rs7304951	A	G	9100.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:0,329:1.00:329
chr12	50746917	rs10876023	A	G	11972.77	.	AC=2;AF=1.00;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	1/1:0,441:1.00:441
chr12	50747005	rs10876024	T	C	10671.77	.	AC=2;AF=1.00;AN=2;DB;DP=415;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.97;QD=26.88;SOR=0.729;set=HC	GT:AD:AF:DP	1/1:0,397:1.00:397
chr12	50749221	rs4435082	G	C	12608.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.93;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:0,287:1.00:287
chr12	50749227	rs4625558	T	G	12457.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.33;SOR=0.774;set=HC	GT:AD:AF:DP	1/1:0,281:1.00:281
chr12	50750040	rs7964439	C	A	2447.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr12	50754563	rs12303082	T	G	6353.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr12	50821776	rs148662102	C	CT	117.70	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.379;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=6.008;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=0.000;QD=7.85;ReadPosRankSum=-1.488;SOR=0.075;set=HC	GT:AD:AF:DP	0/1:4,11:0.73:15
chr12	50824232	rs11612002	A	G	2021.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:74,97:0.57:171
chr12	50829263	rs113327207	T	TTATTC	637.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr12	50856259	rs5798139	C	CA	1433.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.841;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=2.619;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=1.460;QD=9.25;ReadPosRankSum=0.708;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:58,97:0.63:155
chr12	50898784	.	T	TGGCGGCGGCGGCGGCGGCGGCGGCGGCGGC	1210.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.008;ClippingRankSum=0.000;DP=128;ExcessHet=3.0103;FS=13.420;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.32;ReadPosRankSum=-0.923;SOR=2.448;set=HC	GT:AD:AF:DP	0/1:70,37:0.35:107
chr12	51019633	rs34609458	TC	T	644.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.113;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.12;ReadPosRankSum=0.987;SOR=1.236;set=HC	GT:AD:AF:DP	0/1:13,27:0.68:40
chr12	51034721	rs2731436	C	T	1602.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:3,68:0.96:71
chr12	51053873	.	CT	C	139.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.807;ClippingRankSum=0.000;DP=96;ExcessHet=3.0103;FS=0.995;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.561;QD=1.54;ReadPosRankSum=0.696;SOR=0.536;set=HC	GT:AD:AF:DP	0/1:65,26:0.29:91
chr12	51076844	rs2731447	C	T	1195.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr12	51089572	rs2684890	G	A	6019.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr12	51089616	rs2684891	T	C	11099.77	.	AC=2;AF=1.00;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	1/1:0,404:1.00:404
chr12	51093105	rs113950715	T	C	1486.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:49,63:0.56:112
chr12	51108283	rs151181050	C	A	6012.77	.	AC=1;AF=0.500;AN=2;DB;DP=636;set=Intersection	GT:AD:AF:DP	0/1:337,295:0.47:632
chr12	51135167	rs1975351	A	G	2088.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr12	51135275	rs1866422	T	C	7497.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr12	51173733	rs3809319	A	G	363.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr12	51182122	rs10747592	C	T	2320.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr12	51203226	rs4986837	GT	G	1124.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr12	51236802	rs10876100	T	C	18710.77	.	AC=2;AF=1.00;AN=2;DB;DP=703;set=Intersection	GT:AD:AF:DP	1/1:0,700:1.00:700
chr12	51236931	rs829121	G	A	5036.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:1,175:0.99:176
chr12	51319346	rs2359005	A	G	2528.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr12	51323672	.	GT	G	1262.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.210;ClippingRankSum=0.000;DP=162;ExcessHet=3.0103;FS=3.219;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=1.880;QD=8.20;ReadPosRankSum=1.076;SOR=0.999;set=HC	GT:AD:AF:DP	0/1:69,85:0.55:154
chr12	51354625	rs67646958	G	A	1725.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr12	51354692	rs141832341	G	GT	6397.73	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr12	51354694	rs79907213	C	T	6587.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.07;SOR=1.302;set=HC	GT:AD:AF:DP	1/1:0,143:1.00:143
chr12	51354694	.	CTC	TTT	2947	.	AC=2;AF=1.00;AN=2;BRF=0.45;FR=1.0000;HP=2;HapScore=1;MGOF=17;MMLQ=23;MQ=59.99;NF=64;NR=33;PP=2947;QD=20;SC=AACTCCTGGTCTCACACGATG;SbPval=0.63;Source=Platypus;TC=110;TCF=70;TCR=40;TR=97;WE=51354704;WS=51354682;set=Platypus	GT:AD:AF:DP	1/1:13,97:0.88:110
chr12	51354696	rs79534240	C	T	6586.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.91;SOR=1.248;set=HC	GT:AD:AF:DP	1/1:0,150:1.00:150
chr12	51354803	rs12306808	C	T	9664.77	.	AC=2;AF=1.00;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	1/1:0,367:1.00:367
chr12	51382232	rs161044	T	C	4684.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr12	51386527	rs224567	A	G	3634.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.806;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.96;MQRankSum=7.875;QD=40.39;ReadPosRankSum=1.109;SOR=0.669;set=HC	GT:AD:AF:DP	1/1:2,88:0.98:90
chr12	51386548	rs224568	A	G	4746.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.972;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.97;MQRankSum=11.181;QD=38.28;ReadPosRankSum=1.650;SOR=0.552;set=HC	GT:AD:AF:DP	1/1:1,123:0.99:124
chr12	51386839	rs224569	C	G	934.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr12	51386868	rs224570	T	C	457.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr12	51393116	rs224454	C	T	9808.77	.	AC=2;AF=1.00;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	1/1:0,360:1.00:360
chr12	51399050	rs224589	T	G	3210.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr12	51399997	rs224590	A	G	579.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:1,25:0.96:26
chr12	51400084	rs140582579	AAAAC	A	1223.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.70;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr12	51402905	rs445520	T	G	12546.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=6.396;ClippingRankSum=0.000;DB;DP=529;ExcessHet=3.0103;FS=14.457;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.94;ReadPosRankSum=1.113;SOR=0.595;set=HC	GT:AD:AF:DP	1/1:12,512:0.98:524
chr12	51442944	rs12379	G	A	6668.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645;ClippingRankSum=0.000;DB;DP=693;ExcessHet=3.0103;FS=1.101;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.71;ReadPosRankSum=-0.421;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:349,338:0.49:687
chr12	51447506	rs7971308	A	G	3602.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:168,153:0.48:321
chr12	51453366	rs3190077	A	C	533.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:32,23:0.42:55
chr12	51461425	rs4768956	C	G	3935.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr12	51461793	rs2029146	G	A	2717.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:94,118:0.56:212
chr12	51467596	rs11169696	A	C	3516.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr12	51502791	rs7134695	C	T	1089.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:27,42:0.61:69
chr12	51504799	rs7978782	T	C	6749.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr12	51504894	rs11308041	GT	G	451.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.010;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=1.636;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.51;ReadPosRankSum=-0.049;SOR=1.201;set=HC	GT:AD:AF:DP	0/1:11,32:0.74:43
chr12	51511244	rs10876138	G	A	35.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.960;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.96;ReadPosRankSum=-0.189;SOR=0.132;set=HC	GT:AD:AF:DP	0/1:3,3:0.50:6
chr12	51512637	rs3839987	CT	C	1465.73	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:41,51:0.55:92
chr12	51518787	rs3751275	C	G	3678.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:151,158:0.51:309
chr12	51519106	rs17122760	A	G	1758.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:83,79:0.49:162
chr12	51632507	rs7979728	G	A	762.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:26,31:0.54:57
chr12	51636259	rs1049467	C	T	1882.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;MQ=59.88;set=Intersection	GT:AD:AF:DP	0/1:63,74:0.54:137
chr12	51663215	rs2114876	T	C	1659.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.32;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr12	51681846	rs4611251	C	T	2224.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr12	51681903	rs7954976	T	C	3729.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr12	51685831	rs3210837	T	C	7700.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr12	51686204	rs7306505	T	C	6345.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr12	51686285	rs7135343	A	T	1615.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr12	51691149	rs3782469	A	G	2543.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr12	51707801	rs143416791	CTTATTTAT	C,CTTATTTATTTAT	1186.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=74;set=Intersection	GT:AF:DP	1/2:0.61,0.39:31
chr12	51722311	rs7138439	C	T	3115.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr12	51735022	rs934089	A	T	8480.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:1,319:1.00:320
chr12	51736596	.	A	AT	129.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.769;ClippingRankSum=0.000;DP=59;ExcessHet=3.0103;FS=1.792;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.71;ReadPosRankSum=0.371;SOR=0.346;set=HC	GT:AD:AF:DP	0/1:21,14:0.40:35
chr12	51739618	rs181750918	G	A	2696.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.432;ClippingRankSum=0.000;DB;DP=276;ExcessHet=3.0103;FS=0.439;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.88;ReadPosRankSum=-3.170;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:143,130:0.48:273
chr12	51740388	rs907354	C	A	11921.77	.	AC=2;AF=1.00;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	1/1:3,453:0.99:456
chr12	51748326	rs2288369	G	A	6445.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr12	51748395	rs7971653	G	A	2661.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr12	51752085	rs5798170	GT	G	278.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.440;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=1.491;QD=3.67;ReadPosRankSum=0.000;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:42,34:0.45:76
chr12	51752897	rs907347	G	A	5797.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr12	51796889	rs376258966	ATTAGGTAATAGGTATAAACTGCTCAGAACAGTGCTCAGAACATAATAAATGC	A	1656.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.138;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=9.197;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.500;QD=10.76;ReadPosRankSum=1.971;SOR=1.543;set=HC	GT:AD:AF:DP	0/1:106,48:0.31:154
chr12	51796904	rs907350	T	C	1497.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:48,66:0.58:114
chr12	51846090	rs1995691	G	A	612.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:42,28:0.40:70
chr12	51851126	rs4512904	G	A	2172.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:110,106:0.49:216
chr12	51852511	rs6580835	C	T	2762.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:179,135:0.43:314
chr12	51855984	rs2271149	G	A	483.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:29,22:0.43:51
chr12	51863643	rs4491281	T	C	3622.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr12	51864979	rs2292217	T	C	4354.77	.	AC=1;AF=0.500;AN=2;DB;DP=460;set=Intersection	GT:AD:AF:DP	0/1:225,208:0.48:433
chr12	51869098	rs868884	G	A	1192.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:53,44:0.45:97
chr12	51879826	rs10783445	G	T	2045.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr12	51882355	rs10706140	CT	C	64.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.863;ClippingRankSum=-0.000;DB;DP=19;ExcessHet=3.0103;FS=3.590;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.05;ReadPosRankSum=0.212;SOR=2.215;set=HC	GT:AD:AF:DP	0/1:7,9:0.56:16
chr12	51888998	rs2102376	G	T	371.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:19,17:0.47:36
chr12	51890721	rs10783448	G	A	1475.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:48,61:0.56:109
chr12	51898014	rs3896351	A	G	2194.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:98,104:0.51:202
chr12	51898108	rs3858636	G	A	695.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:24,25:0.51:49
chr12	51901390	rs7305599	A	G	462.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:18,19:0.51:37
chr12	52080965	rs4761829	C	T	18574.77	.	AC=2;AF=1.00;AN=2;DB;DP=697;set=Intersection	GT:AD:AF:DP	1/1:0,692:1.00:692
chr12	52099153	rs2291265	C	T	11685.77	.	AC=2;AF=1.00;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	1/1:0,421:1.00:421
chr12	52100566	rs10783474	G	A	1977.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr12	52139669	.	CT	C	142.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.081;ClippingRankSum=0.000;DP=213;ExcessHet=3.0103;FS=1.627;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.929;QD=0.69;ReadPosRankSum=-1.947;SOR=0.932;set=HC	GT:AD:AF:DP	0/1:163,43:0.21:206
chr12	52156255	rs303767	A	C	10573.77	.	AC=2;AF=1.00;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	1/1:1,386:1.00:387
chr12	52159438	rs56879517	G	GT	2941.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.570;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=0.307;QD=20.15;ReadPosRankSum=-1.288;SOR=1.263;set=HC	GT:AD:AF:DP	1/1:3,143:0.98:146
chr12	52163789	rs303808	G	A	2029.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr12	52173781	rs76315468	G	GTTC	1492.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr12	52184271	rs303815	T	C	5949.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.29;SOR=0.829;set=HC	GT:AD:AF:DP	1/1:0,218:1.00:218
chr12	52200028	rs303828	C	A	5958.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr12	52200742	rs60637	C	A	20825.77	.	AC=2;AF=1.00;AN=2;DB;DP=757;set=Intersection	GT:AD:AF:DP	1/1:0,747:1.00:747
chr12	52204246	rs172559	T	C	11700.77	.	AC=2;AF=1.00;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	1/1:0,437:1.00:437
chr12	52215102	rs303819	T	G	19054.77	.	AC=2;AF=1.00;AN=2;DB;DP=705;set=Intersection	GT:AD:AF:DP	1/1:1,701:1.00:702
chr12	52225638	rs633370	T	A	5054.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.33;SOR=1.138;set=HC	GT:AD:AF:DP	1/1:0,192:1.00:192
chr12	52284233	rs706832	T	C	21322.77	.	AC=2;AF=1.00;AN=2;DB;DP=795;set=Intersection	GT:AD:AF:DP	1/1:0,774:1.00:774
chr12	52307963	rs67833112	TCAGAATTGGAATTCTGCTGGG	T	2092.73	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:71,57:0.45:128
chr12	52308158	.	TG	T	1457.73	.	AC=1;AF=0.500;AN=2;DP=81;set=Intersection	GT:AD:AF:DP	0/1:41,37:0.47:78
chr12	52308164	.	G	T	1494.77	.	AC=1;AF=0.500;AN=2;DP=86;set=Intersection	GT:AD:AF:DP	0/1:44,41:0.48:85
chr12	52312944	rs706815	T	C	3427.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:110,102:0.48:212
chr12	52312964	rs706816	A	G	2960.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:84,80:0.49:164
chr12	52345497	rs10540557	TGCG	T	1293.73	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:49,37:0.43:86
chr12	52403110	rs10876227	G	A	1523.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:67,62:0.48:129
chr12	52404618	rs1298913	T	G	913.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:35,40:0.53:75
chr12	52408873	rs139529598	C	T	3303.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.964;ClippingRankSum=0.000;DB;DP=338;ExcessHet=3.0103;FS=3.741;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.976;QD=10.07;ReadPosRankSum=0.829;SOR=0.903;set=HC	GT:AD:AF:DP	0/1:169,159:0.48:328
chr12	52565322	rs3741737	G	T	13098.77	.	AC=2;AF=1.00;AN=2;DB;DP=504;set=Intersection	GT:AD:AF:DP	1/1:3,490:0.99:493
chr12	52566047	rs3741736	G	A	8087.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr12	52566650	rs73103470	A	C	1035.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr12	52574780	rs4762060	A	G	2073.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr12	52600033	rs10747632	T	C	2302.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:119,114:0.49:233
chr12	52602013	rs1902767	C	T	3817.77	.	AC=1;AF=0.500;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	0/1:186,181:0.49:367
chr12	52627215	rs7308888	A	G	5714.77	.	AC=1;AF=0.500;AN=2;DB;DP=527;set=Intersection	GT:AD:AF:DP	0/1:255,257:0.50:512
chr12	52631313	rs6580870	A	G	3663.77	.	AC=1;AF=0.500;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	0/1:225,187:0.45:412
chr12	52631394	rs10637094	C	CAT	7036.73	.	AC=1;AF=0.500;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	0/1:218,185:0.46:403
chr12	52631409	rs11170058	C	T	6545.77	.	AC=1;AF=0.500;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	0/1:208,176:0.46:384
chr12	52631510	rs10546862	ATGTG	A	512.73	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:25,23:0.48:48
chr12	52635241	rs2078201	G	C	2055.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:105,88:0.46:193
chr12	52635443	rs2243588	T	C	4600.77	.	AC=1;AF=0.500;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	0/1:237,214:0.47:451
chr12	52639302	rs2608009	G	C	3152.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:131,151:0.54:282
chr12	52645754	rs1894035	T	C	7234.77	.	AC=1;AF=0.500;AN=2;DB;DP=682;set=Intersection	GT:AD:AF:DP	0/1:336,338:0.50:674
chr12	52648297	rs9325150	T	G	2924.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr12	52649887	rs2168762	T	C	13106.77	.	AC=2;AF=1.00;AN=2;DB;DP=508;set=Intersection	GT:AD:AF:DP	1/1:0,492:1.00:492
chr12	52649954	rs2242139	T	C	5775.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr12	52661075	rs748040	C	T	8656.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,318:1.00:318
chr12	52661192	rs1870222	A	G	16801.77	.	AC=2;AF=1.00;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	1/1:0,400:1.00:400
chr12	52661209	rs1870223	T	C	15690.77	.	AC=2;AF=1.00;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	1/1:0,354:1.00:354
chr12	52661302	rs1870224	C	A	4692.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr12	52681056	rs4761856	C	T	6233.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr12	52681080	rs4761784	G	A	5943.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr12	52681714	rs6580872	T	C	10407.77	.	AC=2;AF=1.00;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	1/1:0,369:1.00:369
chr12	52681925	rs6580873	A	C	8294.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr12	52681968	rs6580874	T	C	3948.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.64;QD=34.04;SOR=3.592;set=HC	GT:AD:AF:DP	1/1:0,116:1.00:116
chr12	52685096	rs2071588	C	G	2011.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr12	52698931	rs10876274	G	T	1032.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:52,46:0.47:98
chr12	52711590	rs117028083	G	A	3163.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr12	52755097	rs1791627	A	T	2755.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr12	52755341	rs2298796	T	C	3278.77	.	AC=1;AF=0.500;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	0/1:166,166:0.50:332
chr12	52774235	rs951773	A	G	11579.77	.	AC=2;AF=1.00;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	1/1:1,441:1.00:442
chr12	52776679	rs1732297	A	G	1182.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr12	52778772	rs1732303	C	T	1877.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr12	52788928	rs2658658	G	A	10212.77	.	AC=2;AF=1.00;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	1/1:0,387:1.00:387
chr12	52789509	rs1732264	T	C	1558.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr12	52789597	rs1732265	A	G	8206.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.06;QD=44.36;SOR=0.944;set=HC	GT:AD:AF:DP	1/1:0,185:1.00:185
chr12	52789605	rs1732266	T	A	8132.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.12;QD=44.20;SOR=0.959;set=HC	GT:AD:AF:DP	1/1:0,184:1.00:184
chr12	52789691	rs34479712	A	C	6688.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr12	52789693	rs11304728	GT	G	6678.73	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr12	52790899	rs1791635	T	C	9659.77	.	AC=2;AF=1.00;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	1/1:0,355:1.00:355
chr12	52790940	rs2249384	C	T	5010.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:2,180:0.99:182
chr12	52866060	rs11608915	C	T	8843.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:2,323:0.99:325
chr12	52882410	rs144849815	T	TGAA	6890.73	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr12	52884623	rs372399609	G	A	10625.77	.	AC=1;AF=0.500;AN=2;DB;DP=985;set=Intersection	GT:AD:AF:DP	0/1:488,492:0.50:980
chr12	52913668	rs11170164	C	T	6476.77	.	AC=1;AF=0.500;AN=2;DB;DP=582;set=Intersection	GT:AD:AF:DP	0/1:281,289:0.51:570
chr12	52938364	rs2292507	T	C	11934.77	.	AC=2;AF=1.00;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	1/1:0,449:1.00:449
chr12	52938497	rs10783518	A	C	5099.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr12	52938535	rs10783519	A	G	2939.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr12	52939407	rs10580903	AGAG	A	7511.73	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr12	52939994	rs11170171	T	C	5345.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr12	52941529	rs4761929	T	C	1584.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr12	52941784	rs3839975	CAG	C	17066.73	.	AC=2;AF=1.00;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	1/1:0,387:1.00:387
chr12	52942235	rs12308719	G	T	2994.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr12	52942421	rs143253176	C	G	2607.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:135,122:0.47:257
chr12	52942998	rs635206	C	T	778.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr12	52943144	rs4761930	G	A	5047.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.43;SOR=0.861;set=HC	GT:AD:AF:DP	1/1:0,191:1.00:191
chr12	52944060	rs10747643	T	C	4260.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr12	52961305	rs76678410	A	T	496.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:25,19:0.43:44
chr12	52961318	rs74095143	C	T	604.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:32,25:0.44:57
chr12	52963169	rs7972909	C	A	237.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:12,11:0.48:23
chr12	52964718	rs597048	G	A	3211.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:144,144:0.50:288
chr12	52964934	rs669865	T	G	1122.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr12	52965173	rs670741	T	G	7020.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr12	52965722	rs673363	T	C	8351.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.03;SOR=0.739;set=HC	GT:AD:AF:DP	1/1:0,309:1.00:309
chr12	52965761	rs673449	C	T	13991.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:2,326:0.99:328
chr12	52965782	rs673476	T	C	13619.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:2,314:0.99:316
chr12	52965877	rs11170175	T	G	705.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:57,33:0.37:90
chr12	52966137	rs685720	T	A	5478.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr12	52966512	rs687127	C	A	3278.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:176,156:0.47:332
chr12	52967080	rs6580887	A	G	2146.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:83,87:0.51:170
chr12	52980078	rs17116392	T	C	572.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:10,20:0.67:30
chr12	52980902	rs71443262	T	G	1878.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:74,83:0.53:157
chr12	52981442	rs11170183	C	A	4186.77	.	AC=1;AF=0.500;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	0/1:191,189:0.50:380
chr12	52981627	rs7310138	A	T	8218.77	.	AC=1;AF=0.500;AN=2;DB;DP=792;set=Intersection	GT:AD:AF:DP	0/1:380,405:0.52:785
chr12	52981676	rs7310156	A	C	4654.77	.	AC=1;AF=0.500;AN=2;DB;DP=511;set=Intersection	GT:AD:AF:DP	0/1:268,239:0.47:507
chr12	52984620	rs12818575	C	T	1317.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:134,74:0.36:208
chr12	52985293	rs12824366	A	G	2894.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:140,141:0.50:281
chr12	52986132	rs617820	T	A	6197.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:1,239:1.00:240
chr12	52986187	rs12833456	T	C	3953.77	.	AC=1;AF=0.500;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	0/1:189,191:0.50:380
chr12	52992744	rs61740873	G	A	10129.77	.	AC=1;AF=0.500;AN=2;DB;DP=1038;set=Intersection	GT:AD:AF:DP	0/1:517,514:0.50:1031
chr12	52992812	rs11170187	T	C	7374.77	.	AC=1;AF=0.500;AN=2;DB;DP=643;set=Intersection	GT:AD:AF:DP	0/1:312,328:0.51:640
chr12	53002956	rs591636	T	C	4653.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr12	53004603	rs7302968	G	A	7910.77	.	AC=1;AF=0.500;AN=2;DB;DP=709;set=Intersection	GT:AD:AF:DP	0/1:331,377:0.53:708
chr12	53004654	rs595624	C	G	3799.77	.	AC=1;AF=0.500;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	0/1:244,188:0.44:432
chr12	53043636	rs632952	G	A	1825.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:106,84:0.44:190
chr12	53043663	rs150989489	A	C	3299.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:163,149:0.48:312
chr12	53045626	rs2634041	T	C	6606.77	.	AC=1;AF=0.500;AN=2;DB;DP=732;set=Intersection	GT:AD:AF:DP	0/1:382,331:0.46:713
chr12	53069222	.	CACCTCCGGAGCCGTAGCTGCT	C	4080.73	.	AC=1;AF=0.500;AN=2;DP=318;set=Intersection	GT:AD:AF:DP	0/1:176,115:0.40:291
chr12	53070121	rs698170	T	G	6680.77	.	AC=1;AF=0.500;AN=2;DB;DP=540;set=Intersection	GT:AD:AF:DP	0/1:235,299:0.56:534
chr12	53070145	rs936958	G	A	6980.77	.	AC=1;AF=0.500;AN=2;DB;DP=586;set=Intersection	GT:AD:AF:DP	0/1:259,322:0.55:581
chr12	53071338	rs626480	A	G	6269.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr12	53071560	rs2741158	A	G	2846.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:130,135:0.51:265
chr12	53073471	rs3837476	C	CA	2397.73	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:57,70:0.55:127
chr12	53085089	rs636127	T	C	4437.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr12	53088676	rs79612830	G	T	1799.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:98,87:0.47:185
chr12	53089460	rs5798218	GACCC	G	3994.73	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr12	53091730	rs12426129	C	T	3416.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr12	53096913	rs1625862	G	A	18654.77	.	AC=2;AF=1.00;AN=2;DB;DP=723;set=Intersection	GT:AD:AF:DP	1/1:0,705:1.00:705
chr12	53097263	rs73094689	C	A	6281.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr12	53162773	rs1464423	A	G	13560.77	.	AC=2;AF=1.00;AN=2;DB;DP=662;set=Intersection	GT:AD:AF:DP	1/1:30,562:0.95:592
chr12	53164848	rs7313832	G	A	12287.77	.	AC=2;AF=1.00;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	1/1:0,456:1.00:456
chr12	53165940	rs6580904	C	T	17827.77	.	AC=2;AF=1.00;AN=2;DB;DP=669;set=Intersection	GT:AD:AF:DP	1/1:0,653:1.00:653
chr12	53166192	rs6580905	G	A	3490.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr12	53167313	rs7399317	T	C	2459.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr12	53171001	rs11170272	G	A	6255.77	.	AC=1;AF=0.500;AN=2;DB;DP=560;set=Intersection	GT:AD:AF:DP	0/1:264,291:0.52:555
chr12	53184559	rs11834139	C	T	3201.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:170,158:0.48:328
chr12	53186088	rs3887954	G	C	6954.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr12	53186122	rs4432093	G	A	6594.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr12	53187150	rs4919750	C	T	9535.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:0,352:1.00:352
chr12	53202380	rs2307028	T	C	1430.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:86,60:0.41:146
chr12	53204614	rs2307027	C	T	1355.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:148,81:0.35:229
chr12	53204757	rs10783539	T	C	619.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:46,30:0.39:76
chr12	53207583	rs11267392	C	CCACCAAAGCCACCAGTGCCGAAACCAGCTCCGAAGCCGCCGG	5531.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.548;ClippingRankSum=0.000;DB;DP=804;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.000;QD=9.25;ReadPosRankSum=0.241;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:454,144:0.24:598
chr12	53216184	rs4415849	A	G	3893.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:2,146:0.99:148
chr12	53217056	rs10876353	G	A	2545.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:95,105:0.53:200
chr12	53217701	rs10876354	C	A	1927.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:124,94:0.43:218
chr12	53223661	rs7970710	C	T	585.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:16,25:0.61:41
chr12	53227803	rs2638497	A	G	16224.77	.	AC=2;AF=1.00;AN=2;DB;DP=617;set=Intersection	GT:AD:AF:DP	1/1:1,609:1.00:610
chr12	53242440	rs2013335	A	G	5998.77	.	AC=1;AF=0.500;AN=2;DB;DP=597;set=Intersection	GT:AD:AF:DP	0/1:300,291:0.49:591
chr12	53294381	rs8608	T	C	1100.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:34,46:0.57:80
chr12	53294821	rs4351899	T	G	857.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:40,44:0.52:84
chr12	53295917	rs2035875	A	G	912.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:42,44:0.51:86
chr12	53298769	rs1065306	A	G	2679.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:123,126:0.51:249
chr12	53298835	rs2070910	T	G	1278.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:63,58:0.48:121
chr12	53343461	rs17120866	A	AC	7598.73	.	AC=1;AF=0.500;AN=2;DB;DP=566;set=Intersection	GT:AD:AF:DP	0/1:268,277:0.51:545
chr12	53400440	rs61927957	T	G	10558.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.155;ClippingRankSum=0.000;DB;DP=407;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.73;ReadPosRankSum=-0.872;SOR=0.449;set=HC	GT:AD:AF:DP	1/1:1,394:1.00:395
chr12	53416119	rs7975725	T	C	9500.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	1/1:0,348:1.00:348
chr12	53416251	rs10506315	C	T	2216.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr12	53421746	rs59856997	CT	C	5556.73	.	AC=2;AF=1.00;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:15,282:0.95:297
chr12	53431298	rs146008363	T	A	2350.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:64,107:0.63:171
chr12	53432088	rs7968918	T	C	1748.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr12	53433089	rs1548204	C	A	7482.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr12	53433486	rs8916	C	T	5347.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:1,184:0.99:185
chr12	53433709	rs1356993	C	G	1789.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr12	53433788	rs1356994	A	G	5775.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr12	53442956	rs12369033	G	C	5170.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:1,198:0.99:199
chr12	53449735	rs2364153	T	C	4321.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr12	53470777	rs7977070	G	C	786.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:25,31:0.55:56
chr12	53471839	rs11170398	A	G	339.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:39,21:0.35:60
chr12	53471929	rs7302636	T	C	605.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:35,29:0.45:64
chr12	53472002	rs11170400	G	T	628.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:27,32:0.54:59
chr12	53498073	.	CT	C	413.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.355;ClippingRankSum=0.000;DP=264;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.000;QD=2.80;ReadPosRankSum=-1.172;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:86,62:0.42:148
chr12	53509072	.	G	T	752.77	.	AC=1;AF=0.500;AN=2;DP=61;set=Intersection	GT:AD:AF:DP	0/1:29,31:0.52:60
chr12	53571738	.	TA	T	32.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.257;ClippingRankSum=0.000;DP=81;ExcessHet=3.0103;FS=2.575;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.45;ReadPosRankSum=1.282;SOR=0.843;set=HC	GT:AD:AF:DP	0/1:58,14:0.19:72
chr12	53572108	.	C	CA	43.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.066;ClippingRankSum=0.000;DP=139;ExcessHet=3.0103;FS=0.897;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.33;ReadPosRankSum=0.519;SOR=0.556;set=HC	GT:AD:AF:DP	0/1:112,21:0.16:133
chr12	53573454	rs200549672	C	CA	131.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.141;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.20;ReadPosRankSum=-0.302;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:87,23:0.21:110
chr12	53581383	rs74796725	G	T	2650.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:138,130:0.49:268
chr12	53593972	.	T	TATACAC	4400.73	.	AC=1;AF=0.500;AN=2;DP=217;set=Intersection	GT:AD:AF:DP	0/1:96,108:0.53:204
chr12	53605496	rs61754163	C	T	1036.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:31,47:0.60:78
chr12	53647373	rs10876422	T	C	6558.77	.	AC=1;AF=0.500;AN=2;DB;DP=627;set=Intersection	GT:AD:AF:DP	0/1:321,301:0.48:622
chr12	53662624	rs6580942	C	A	1684.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:82,76:0.48:158
chr12	53662735	rs4758965	C	T	3878.77	.	AC=1;AF=0.500;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	0/1:233,187:0.45:420
chr12	53664148	rs4758963	G	A	2853.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:98,134:0.58:232
chr12	53664308	rs146243389	GTTTGGGGTTGCTCCACTGCCCTCAAACAGC	G	2467.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.174;ClippingRankSum=0.000;DB;DP=272;ExcessHet=3.0103;FS=1.981;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.361;QD=12.85;ReadPosRankSum=0.542;SOR=0.863;set=HC	GT:AD:AF:DP	0/1:124,68:0.35:192
chr12	53666713	rs4759086	A	G	374.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:10,15:0.60:25
chr12	53670545	rs1318648	C	A	8804.77	.	AC=1;AF=0.500;AN=2;DB;DP=823;set=Intersection	GT:AD:AF:DP	0/1:403,417:0.51:820
chr12	53671549	rs2272313	A	G	2167.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:84,96:0.53:180
chr12	53673424	rs77269929	T	TTGG,TTGGACC	2101.73	.	AC=1,0;AF=0.500,0.00;ALERT;AN=2;DB;DP=107;set=Intersection	GT:AF:DP	0/1:0.50:105
chr12	53673425	.	A	C	2647	.	AC=1;AF=0.500;AN=2;BRF=0.31;FR=0.5000;HP=1;HapScore=4;MGOF=1;MMLQ=27;MQ=60.0;NF=37;NR=10;PP=2647;QD=20;SC=AGGTCAAACTACAGTCCAAGG;SbPval=0.75;Source=Platypus;TC=104;TCF=77;TCR=27;TR=47;WE=53673433;WS=53673414;set=Platypus	GT:AD:AF:DP	0/1:57,47:0.45:104
chr12	53673425	rs370889472	A	ACCC	2101.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.494;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.46;ReadPosRankSum=0.418;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:54,54:0.50:108
chr12	53677072	rs1609473	T	G	10651.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	1/1:0,379:1.00:379
chr12	53677089	rs4454760	G	A	9948.77	.	AC=2;AF=1.00;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	1/1:0,368:1.00:368
chr12	53681683	rs1379610	A	G	301.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:17,13:0.43:30
chr12	53681883	rs1110719	A	T	2621.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr12	53682267	rs3080422	CAA	C	3259.73	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:105,87:0.45:192
chr12	53682326	rs1110720	G	A	2152.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:93,105:0.53:198
chr12	53682457	rs56358776	G	A	663.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:59,35:0.37:94
chr12	53682986	rs3214023	C	T	22366.77	.	AC=2;AF=1.00;AN=2;DB;DP=830;set=Intersection	GT:AD:AF:DP	1/1:2,823:1.00:825
chr12	53684619	rs61754164	A	G	665.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:39,36:0.48:75
chr12	53686703	rs1056685	G	A	5670.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr12	53689190	rs1870240	C	G	2979.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr12	53690188	rs59765323	CT	C	1415.73	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:4,71:0.95:75
chr12	53691962	rs2694861	C	A	2573.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr12	53692920	rs34165644	C	CA	639.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.648;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=3.223;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=0.860;QD=9.14;ReadPosRankSum=2.169;SOR=1.479;set=HC	GT:AD:AF:DP	0/1:22,48:0.69:70
chr12	53692955	rs1020745	G	A	5176.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr12	53693277	rs56249432	TG	T	1315.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr12	53693532	rs1534284	AA	GC	16081.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,357:1.00:357
chr12	53700848	rs1534282	C	T	14732.77	.	AC=2;AF=1.00;AN=2;DB;DP=541;set=Intersection	GT:AD:AF:DP	1/1:0,535:1.00:535
chr12	53700860	rs711316	A	G	12848.77	.	AC=2;AF=1.00;AN=2;DB;DP=460;set=Intersection	GT:AD:AF:DP	1/1:0,456:1.00:456
chr12	53702371	rs4759287	T	C	9780.77	.	AC=2;AF=1.00;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	1/1:0,354:1.00:354
chr12	53703021	rs1546808	G	A	6984.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr12	53708011	rs7953255	G	C	5680.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr12	53708092	rs80027466	A	G	2801.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:137,137:0.50:274
chr12	53709708	rs7960963	G	T	1509.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr12	53714290	rs4759232	T	G	1529.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr12	53714496	rs4759231	A	G	6817.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr12	53714509	rs7298879	T	G	6100.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr12	53714993	rs4759020	C	T	1953.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr12	53722098	rs7138938	A	G	13327.77	.	AC=2;AF=1.00;AN=2;DB;DP=506;set=Intersection	GT:AD:AF:DP	1/1:0,502:1.00:502
chr12	53722128	rs7139272	G	A	15449.77	.	AC=2;AF=1.00;AN=2;DB;DP=570;set=Intersection	GT:AD:AF:DP	1/1:0,566:1.00:566
chr12	53729492	rs74695556	G	T	210.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.988;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.78;ReadPosRankSum=0.421;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:11,13:0.54:24
chr12	53862701	rs11447052	C	CT	330.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.412;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=8.817;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=0.693;QD=8.27;ReadPosRankSum=-0.655;SOR=2.409;set=HC	GT:AD:AF:DP	0/1:17,23:0.57:40
chr12	53874824	.	G	T	112.77	.	AC=1;AF=0.500;AN=2;DP=12;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr12	53874892	.	C	CAT	138.73	.	AC=1;AF=0.500;AN=2;DP=27;set=Intersection	GT:AD:AF:DP	0/1:20,7:0.26:27
chr12	53877562	rs784565	C	T	2471.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr12	53880653	rs7958457	C	T	3179.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:109,147:0.57:256
chr12	53925371	rs4759015	G	A	69.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:7,4:0.36:11
chr12	53926889	rs12422400	G	A	552.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:24,28:0.54:52
chr12	53928591	.	C	T	319.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.782;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;FS=9.432;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.32;ReadPosRankSum=-1.694;SOR=0.039;set=HC	GT:AD:AF:DP	0/1:10,14:0.58:24
chr12	53946237	.	G	A	56.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.752;ClippingRankSum=0.000;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.03;ReadPosRankSum=1.541;SOR=0.061;set=HC	GT:AD:AF:DP	0/1:23,5:0.18:28
chr12	53946595	rs3741652	C	G	396.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:17,16:0.48:33
chr12	53994853	rs369709383	CA	C	206.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.246;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.40;ReadPosRankSum=0.447;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:55,31:0.36:86
chr12	54066271	rs10876480	C	G	335.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:22,17:0.44:39
chr12	54067544	rs2857000	A	G	866.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr12	54067603	.	C	CA	393.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.102;ClippingRankSum=0.000;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.71;ReadPosRankSum=0.126;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:34,35:0.51:69
chr12	54067827	rs12422531	C	T	372.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:11,14:0.56:25
chr12	54069803	rs916134	A	G	768.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:42,37:0.47:79
chr12	54070062	rs4020138	C	CTG	3604.73	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:85,93:0.52:178
chr12	54109659	rs3741659	C	T	4911.77	.	AC=1;AF=0.500;AN=2;DB;DP=539;set=Intersection	GT:AD:AF:DP	0/1:291,245:0.46:536
chr12	54109733	rs3741658	A	G	3224.77	.	AC=1;AF=0.500;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	0/1:234,162:0.41:396
chr12	54109927	rs2277370	C	T	1321.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:51,60:0.54:111
chr12	54117592	rs10783596	G	A	1458.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:68,59:0.46:127
chr12	54339052	rs4759058	C	A	9264.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:2,343:0.99:345
chr12	54348554	rs72049639	CGGGAT	C	1706.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr12	54348571	rs199806153	G	GA	768.73	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:23,21:0.48:44
chr12	54348578	rs55661050	G	A	828.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:25,23:0.48:48
chr12	54349365	rs10876524	C	T	2684.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr12	54367061	rs4759315	T	G	8047.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr12	54385599	rs11614913	C	T	1262.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:64,62:0.49:126
chr12	54394497	rs2241820	C	T	3689.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.55;SOR=0.767;set=HC	GT:AD:AF:DP	1/1:0,139:1.00:139
chr12	54428011	rs2071449	C	A	2202.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:95,98:0.51:193
chr12	54449069	rs72272573	AAT	A	317.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.516;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.59;ReadPosRankSum=-0.517;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:16,14:0.47:30
chr12	54496006	rs12308675	T	C	1064.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:50,42:0.46:92
chr12	54496166	rs3195797	G	T	5101.77	.	AC=1;AF=0.500;AN=2;DB;DP=474;set=Intersection	GT:AD:AF:DP	0/1:232,240:0.51:472
chr12	54496219	rs1133773	A	G	3484.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:142,156:0.52:298
chr12	54635846	rs2293602	G	T	244.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:12,10:0.45:22
chr12	54651471	rs1140681	A	G	1813.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:84,75:0.47:159
chr12	54677980	rs7967622	C	T	986.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:34,39:0.53:73
chr12	54687232	rs10506328	A	C	1058.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:65,52:0.44:117
chr12	54764618	rs2706248	T	C	3121.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr12	54764962	rs2244933	G	T	1444.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:60,74:0.55:134
chr12	54765005	rs3830651	TCTAA	T	1060.73	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:34,29:0.46:63
chr12	54767613	rs2706258	C	T	456.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:22,20:0.48:42
chr12	54767812	rs2887875	G	A	2294.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:148,113:0.43:261
chr12	54767981	rs3832831	C	CAG	999.73	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:32,29:0.48:61
chr12	54772755	rs2706256	C	A	802.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr12	54792599	.	GTC	G	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.828;ClippingRankSum=0.000;DP=48;ExcessHet=3.0103;FS=6.680;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=-0.483;QD=1.30;ReadPosRankSum=-1.949;SOR=1.506;set=HC	GT:AD:AF:DP	0/1:22,7:0.24:29
chr12	54796757	rs7306692	C	T	5482.77	.	AC=1;AF=0.500;AN=2;DB;DP=633;set=Intersection	GT:AD:AF:DP	0/1:342,282:0.45:624
chr12	54799450	rs1249378	A	G	10124.77	.	AC=2;AF=1.00;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	1/1:1,390:1.00:391
chr12	54805753	rs1922254	G	T	11440.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr12	54805765	rs1249181	C	T	11330.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr12	54905815	rs2458409	C	G	3804.77	.	AC=1;AF=0.500;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	0/1:181,181:0.50:362
chr12	54910837	rs1691630	G	A	3585.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:162,165:0.50:327
chr12	54911376	rs34286028	C	T	3236.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:115,155:0.57:270
chr12	54911768	rs1795838	C	T	2152.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:86,92:0.52:178
chr12	54913213	rs10686138	A	ATT	260.75	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.704;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.67;ReadPosRankSum=1.008;SOR=1.292;set=HC	GT:AD:AF:DP	0/1:16,18:0.53:34
chr12	54920566	rs12369172	T	C	1202.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:71,61:0.46:132
chr12	54920591	rs12367426	G	A	796.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:40,34:0.46:74
chr12	54925750	rs10747697	A	C	2154.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr12	54925871	rs59947538	CTT	C	2190.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.743;ClippingRankSum=0.000;DB;DP=226;ExcessHet=3.0103;FS=4.395;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.43;ReadPosRankSum=-0.187;SOR=0.409;set=HC	GT:AD:AF:DP	0/1:100,110:0.52:210
chr12	54932788	rs4758966	T	C	7984.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr12	54955324	rs10747699	T	C	2587.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr12	54955461	rs9668037	A	G	5022.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr12	54955545	rs71444858	CGT	C	2177.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.395;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=3.635;MLEAC=1;MLEAF=0.500;MQ=60.39;MQRankSum=0.675;QD=20.94;ReadPosRankSum=-1.144;SOR=1.122;set=HC	GT:AD:AF:DP	1/1:7,97:0.93:104
chr12	54955647	rs1552957	G	T	1048.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr12	54963491	rs71070829	C	CT	491.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.065;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=1.141;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.06;ReadPosRankSum=0.390;SOR=0.951;set=HC	GT:AD:AF:DP	0/1:26,35:0.57:61
chr12	54963907	rs1153138	T	C	1858.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:87,83:0.49:170
chr12	54968758	rs35584396	C	CA	421.76	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.945;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.38;MQRankSum=0.931;QD=5.62;ReadPosRankSum=1.800;SOR=0.814;set=HC	GT:AD:AF:DP	0/1:35,40:0.53:75
chr12	54975837	rs1249958	T	C	4735.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr12	54977925	rs2292490	T	G	891.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:2,30:0.94:32
chr12	55002014	rs1795819	C	T	1916.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr12	55002053	rs1795818	C	G	3680.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr12	55002065	rs1716356	G	A	3731.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.47;SOR=1.543;set=HC	GT:AD:AF:DP	1/1:0,141:1.00:141
chr12	55004150	rs937308	C	A	4290.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr12	55028808	rs11832807	C	A	595.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr12	55038408	rs11338265	AT	A	501.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.948;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.36;ReadPosRankSum=1.469;SOR=0.596;set=HC	GT:AD:AF:DP	0/1:13,47:0.78:60
chr12	55038704	rs7301225	G	T	496.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:24,23:0.49:47
chr12	55039035	rs36031159	C	T	4257.77	.	AC=1;AF=0.500;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	0/1:201,210:0.51:411
chr12	55041079	rs903768	T	A	1238.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:64,58:0.48:122
chr12	55248357	rs1048371	G	T	1860.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:78,89:0.53:167
chr12	55248739	rs10783684	T	C	893.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:46,38:0.45:84
chr12	55249002	rs7133564	A	G	5291.77	.	AC=1;AF=0.500;AN=2;DB;DP=547;set=Intersection	GT:AD:AF:DP	0/1:283,258:0.48:541
chr12	55250549	rs10783685	T	G	5225.77	.	AC=1;AF=0.500;AN=2;DB;DP=511;set=Intersection	GT:AD:AF:DP	0/1:266,238:0.47:504
chr12	55250612	rs1349910	A	G	24492.77	.	AC=2;AF=1.00;AN=2;DB;DP=946;set=Intersection	GT:AD:AF:DP	1/1:4,935:1.00:939
chr12	55250714	rs10876639	G	A	5354.77	.	AC=1;AF=0.500;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	0/1:224,246:0.52:470
chr12	55354876	.	T	TA	363.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.369;ClippingRankSum=0.000;DP=274;ExcessHet=3.0103;FS=0.622;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.946;QD=1.42;ReadPosRankSum=-1.226;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:201,55:0.21:256
chr12	55368125	rs35981884	C	T	605.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:39,29:0.43:68
chr12	55688267	rs7308594	G	A	11512.77	.	AC=2;AF=1.00;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	1/1:0,412:1.00:412
chr12	55714406	rs5798345	C	CA	5492.73	.	AC=1;AF=0.500;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	0/1:165,175:0.51:340
chr12	55714772	rs7132431	G	A	11199.77	.	AC=2;AF=1.00;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	1/1:0,412:1.00:412
chr12	55714876	rs7132347	C	G	9864.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:0,340:1.00:340
chr12	55715119	rs7132916	G	A	23978.77	.	AC=2;AF=1.00;AN=2;DB;DP=899;set=Intersection	GT:AD:AF:DP	1/1:0,887:1.00:887
chr12	55726450	rs7976828	A	T	3257.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:118,140:0.54:258
chr12	55758832	rs7962135	T	C	2447.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr12	55759851	rs7489047	A	G	1839.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:85,82:0.49:167
chr12	55759878	rs10876751	A	G	1357.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:47,56:0.54:103
chr12	55794264	rs7967395	A	G	2092.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr12	55794976	rs7971073	A	G	15976.77	.	AC=2;AF=1.00;AN=2;DB;DP=573;set=Intersection	GT:AD:AF:DP	1/1:0,564:1.00:564
chr12	55805499	rs61956295	G	A	1932.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.962;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=39.86;MQRankSum=-0.536;QD=13.90;ReadPosRankSum=-1.498;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:68,71:0.51:139
chr12	55805787	rs7300096	C	A	6006.77	.	AC=1;AF=0.500;AN=2;DB;DP=536;set=Intersection	GT:AD:AF:DP	0/1:275,252:0.48:527
chr12	55806238	rs7300594	A	G	21787.77	.	AC=2;AF=1.00;AN=2;DB;DP=838;set=Intersection	GT:AD:AF:DP	1/1:2,823:1.00:825
chr12	55807293	rs3887805	A	G	7118.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr12	55808469	rs7132076	C	G	6502.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr12	55819933	rs10876774	T	C	931.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:30,35:0.54:65
chr12	55820121	rs6581046	C	T	16544.77	.	AC=2;AF=1.00;AN=2;DB;DP=626;set=Intersection	GT:AD:AF:DP	1/1:0,604:1.00:604
chr12	55863224	rs60683621	C	G	2781.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:92,121:0.57:213
chr12	55863381	rs10747756	A	G	5895.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr12	55863398	rs12313730	G	A	2399.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:112,109:0.49:221
chr12	55886294	rs7133698	G	A	9414.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	1/1:0,349:1.00:349
chr12	55886489	rs7304753	T	A	4830.77	.	AC=1;AF=0.500;AN=2;DB;DP=455;set=Intersection	GT:AD:AF:DP	0/1:224,221:0.50:445
chr12	55887087	rs12579181	G	T	1317.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:42,59:0.58:101
chr12	55944926	rs7313959	G	A	2195.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr12	55945119	rs7313899	A	G	37835.77	.	AC=2;AF=1.00;AN=2;DB;DP=1404;set=Intersection	GT:AD:AF:DP	1/1:0,1387:1.00:1387
chr12	56030938	rs10876838	C	T	5426.77	.	AC=1;AF=0.500;AN=2;DB;DP=908;set=Intersection	GT:AD:AF:DP	0/1:607,289:0.32:896
chr12	56031273	rs7970885	G	A	8220.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.903;ClippingRankSum=0.000;DB;DP=1511;ExcessHet=3.0103;FS=1.193;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.54;ReadPosRankSum=0.334;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:1019,466:0.31:1485
chr12	56077599	rs73117273	A	T	1425.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:152,78:0.34:230
chr12	56077740	rs11615467	C	T	1596.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:174,92:0.35:266
chr12	56079084	rs3852533	C	G	8054.77	.	AC=1;AF=0.500;AN=2;DB;DP=472;set=Intersection	GT:AD:AF:DP	0/1:124,340:0.73:464
chr12	56080148	rs3782239	T	C	3180.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:58,122:0.68:180
chr12	56080164	rs7306191	T	G	2370.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:44,90:0.67:134
chr12	56082025	rs17117883	G	C	5435.77	.	AC=1;AF=0.500;AN=2;DB;DP=900;set=Intersection	GT:AD:AF:DP	0/1:573,313:0.35:886
chr12	56082506	rs35887029	CA	C	546.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.625;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=2.619;MLEAC=1;MLEAF=0.500;MQ=60.58;MQRankSum=1.476;QD=8.54;ReadPosRankSum=-1.772;SOR=0.320;set=HC	GT:AD:AF:DP	0/1:18,46:0.72:64
chr12	56082568	rs11613875	A	G	992.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:177,61:0.26:238
chr12	56082785	rs3782240	C	G	2169.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:52,89:0.63:141
chr12	56088206	rs7953669	T	C	13887.77	.	AC=1;AF=0.500;AN=2;DB;DP=878;set=Intersection	GT:AD:AF:DP	0/1:283,588:0.68:871
chr12	56088773	rs2293410	C	T	8738.77	.	AC=1;AF=0.500;AN=2;DB;DP=634;set=Intersection	GT:AD:AF:DP	0/1:210,418:0.67:628
chr12	56089357	rs1800974	C	T	4463.77	.	AC=1;AF=0.500;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	0/1:121,213:0.64:334
chr12	56089554	rs2293411	T	C	1588.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:32,61:0.66:93
chr12	56090038	rs7974721	C	T	1043.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:16,37:0.70:53
chr12	56091617	rs2293412	A	G	23604.77	.	AC=1;AF=0.500;AN=2;DB;DP=1785;set=Intersection	GT:AD:AF:DP	0/1:660,1103:0.63:1763
chr12	56093817	rs11171660	T	G	7253.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:2,261:0.99:263
chr12	56095367	rs11356595	CT	C	1346.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.152;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=7.033;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.442;QD=11.13;ReadPosRankSum=0.609;SOR=1.815;set=HC	GT:AD:AF:DP	0/1:20,101:0.83:121
chr12	56096600	rs138614852	A	AACACAC	3466.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.544;ClippingRankSum=0.000;DB;DP=419;ExcessHet=3.0103;FS=6.055;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.000;QD=9.12;ReadPosRankSum=1.122;SOR=1.037;set=HC	GT:AD:AF:DP	0/1:261,119:0.31:380
chr12	56096816	rs2293413	T	C	11779.77	.	AC=1;AF=0.500;AN=2;DB;DP=874;set=Intersection	GT:AD:AF:DP	0/1:319,544:0.63:863
chr12	56109786	rs4457792	G	C	942.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:58,44:0.43:102
chr12	56115585	rs3138142	C	T	4132.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:94,184:0.66:278
chr12	56115778	rs3138141	C	A	1095.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:32,48:0.60:80
chr12	56115785	rs3138140	C	T	507.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:44,25:0.36:69
chr12	56117700	rs13193	C	G	6285.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.940;ClippingRankSum=0.000;DB;DP=1091;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.84;ReadPosRankSum=-0.803;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:726,351:0.33:1077
chr12	56120589	rs2231464	C	T	2577.77	.	AC=1;AF=0.500;AN=2;DB;DP=486;set=Intersection	GT:AD:AF:DP	0/1:330,151:0.31:481
chr12	56182798	rs73119252	T	C	6193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.640;ClippingRankSum=0.000;DB;DP=1495;ExcessHet=3.0103;FS=0.588;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.19;ReadPosRankSum=0.856;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:1069,408:0.28:1477
chr12	56213297	rs56108400	G	T	4458.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:53,174:0.77:227
chr12	56213978	.	TA	T	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.442;ClippingRankSum=0.000;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=2.000;QD=0.62;ReadPosRankSum=-0.197;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:46,12:0.21:58
chr12	56220974	rs67133580	CA	C	1345.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.399;ClippingRankSum=0.000;DB;DP=233;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=1.229;QD=7.08;ReadPosRankSum=1.034;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:67,123:0.65:190
chr12	56236043	rs2291268	G	A	3961.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr12	56236318	rs7310325	T	C	2289.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr12	56236531	rs7294345	A	G	13393.77	.	AC=2;AF=1.00;AN=2;DB;DP=511;set=Intersection	GT:AD:AF:DP	1/1:0,504:1.00:504
chr12	56295544	rs147424544	GAAGT	G	1454.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.469;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=9.610;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=3.155;QD=7.10;ReadPosRankSum=-0.328;SOR=1.552;set=HC	GT:AD:AF:DP	0/1:157,48:0.23:205
chr12	56295734	rs7302270	A	G	21925.77	.	AC=2;AF=1.00;AN=2;DB;DP=785;set=Intersection	GT:AD:AF:DP	1/1:0,777:1.00:777
chr12	56297625	rs1701698	C	T	4347.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:60,168:0.74:228
chr12	56298115	rs61956424	T	C	2438.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.55;SOR=0.841;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr12	56298120	rs61956425	A	G	2405.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.39;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr12	56326493	rs57799285	GCA	G	735.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.851;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.74;ReadPosRankSum=-0.875;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:54,41:0.43:95
chr12	56330572	rs7297871	G	A	4562.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.545;ClippingRankSum=0.000;DB;DP=1065;ExcessHet=3.0103;FS=2.026;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.32;ReadPosRankSum=0.668;SOR=0.901;set=HC	GT:AD:AF:DP	0/1:775,281:0.27:1056
chr12	56335107	rs1136082	A	G	2977.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.592;ClippingRankSum=0.000;DB;DP=901;ExcessHet=3.0103;FS=0.633;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.37;ReadPosRankSum=-0.289;SOR=0.599;set=HC	GT:AD:AF:DP	0/1:681,202:0.23:883
chr12	56348028	rs1052206	G	A	1319.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.591;ClippingRankSum=0.000;DB;DP=417;ExcessHet=3.0103;FS=1.327;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.22;ReadPosRankSum=-0.502;SOR=0.581;set=HC	GT:AD:AF:DP	0/1:313,97:0.24:410
chr12	56354995	.	G	GA	84.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.649;ClippingRankSum=0.000;DP=140;ExcessHet=3.0103;FS=1.037;MLEAC=1;MLEAF=0.500;MQ=59.29;MQRankSum=0.736;QD=0.67;ReadPosRankSum=-0.291;SOR=0.893;set=HC	GT:AD:AF:DP	0/1:101,25:0.20:126
chr12	56355618	.	A	AT	128.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.774;ClippingRankSum=0.000;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.000;QD=1.40;ReadPosRankSum=-1.127;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:67,25:0.27:92
chr12	56385709	rs74520422	CAA	C	83.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.011;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=1.705;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.74;ReadPosRankSum=1.107;SOR=0.291;set=HC	GT:AD:AF:DP	0/1:38,10:0.21:48
chr12	56398454	rs773115	G	C	14343.77	.	AC=2;AF=1.00;AN=2;DB;DP=532;set=Intersection	GT:AD:AF:DP	1/1:0,525:1.00:525
chr12	56417403	rs2658479	T	C	11382.77	.	AC=2;AF=1.00;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	1/1:2,424:1.00:426
chr12	56426577	rs1619653	A	G	7380.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr12	56427128	rs73123262	G	T	1584.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.354;ClippingRankSum=0.000;DB;DP=472;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.44;ReadPosRankSum=-3.651;SOR=0.649;set=HC	GT:AD:AF:DP	0/1:349,112:0.24:461
chr12	56428344	rs2452822	G	C	23829.77	.	AC=2;AF=1.00;AN=2;DB;DP=847;set=Intersection	GT:AD:AF:DP	1/1:0,835:1.00:835
chr12	56435929	rs1131017	C	G	21999.77	.	AC=2;AF=1.00;AN=2;DB;DP=833;set=Intersection	GT:AD:AF:DP	1/1:0,816:1.00:816
chr12	56436472	rs705706	T	G	3236.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr12	56477694	rs2271194	A	T	12696.77	.	AC=2;AF=1.00;AN=2;DB;DP=474;set=Intersection	GT:AD:AF:DP	1/1:0,466:1.00:466
chr12	56478658	rs7971751	A	C	6973.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.98;QD=29.80;SOR=2.697;set=HC	GT:AD:AF:DP	1/1:0,234:1.00:234
chr12	56482180	rs2292239	T	G	1866.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr12	56488913	rs705708	G	A	580.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:102,39:0.28:141
chr12	56492195	rs375692480	CA	C	94.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.406;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.93;ReadPosRankSum=-0.106;SOR=0.834;set=HC	GT:AD:AF:DP	0/1:77,25:0.25:102
chr12	56500502	.	TA	T	238.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.123;ClippingRankSum=0.000;DP=237;ExcessHet=3.0103;FS=0.641;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=0.000;QD=1.08;ReadPosRankSum=0.365;SOR=0.767;set=HC	GT:AD:AF:DP	0/1:172,49:0.22:221
chr12	56510922	.	CT	C	808.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.698;ClippingRankSum=0.000;DP=331;ExcessHet=3.0103;FS=9.015;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.902;QD=2.67;ReadPosRankSum=0.903;SOR=1.216;set=HC	GT:AD:AF:DP	0/1:188,115:0.38:303
chr12	56528385	rs36091576	A	AT	171.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.604;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=6.951;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.04;ReadPosRankSum=1.666;SOR=0.111;set=HC	GT:AD:AF:DP	0/1:59,25:0.30:84
chr12	56532894	.	C	CT	150.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.748;ClippingRankSum=0.000;DP=182;ExcessHet=3.0103;FS=12.930;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.648;QD=1.44;ReadPosRankSum=0.983;SOR=0.090;set=HC	GT:AD:AF:DP	0/1:79,26:0.25:105
chr12	56551173	.	C	CA	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.251;ClippingRankSum=0.000;DP=177;ExcessHet=3.0103;FS=0.853;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.25;ReadPosRankSum=-0.866;SOR=0.525;set=HC	GT:AD:AF:DP	0/1:142,26:0.15:168
chr12	56551339	rs28365930	C	CAAA	15405.73	.	AC=1;AF=0.500;AN=2;DB;DP=544;set=Intersection	GT:AD:AF:DP	0/1:112,388:0.78:500
chr12	56556167	.	T	TA	613.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.168;ClippingRankSum=0.000;DP=1226;ExcessHet=3.0103;FS=1.450;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=0.000;QD=0.61;ReadPosRankSum=1.673;SOR=0.519;set=HC	GT:AD:AF:DP	0/1:825,175:0.17:1000
chr12	56564056	rs60041436	CTTTT	C	2735.73	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:9,136:0.94:145
chr12	56572452	.	TGAAAGG	T	2454.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.288;ClippingRankSum=0.000;DP=384;ExcessHet=3.0103;FS=5.893;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.56;ReadPosRankSum=-1.323;SOR=1.021;set=HC	GT:AD:AF:DP	0/1:294,80:0.21:374
chr12	56572460	.	TCAGAGTTTTGAACAA	T	2285.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;ClippingRankSum=0.000;DP=451;ExcessHet=3.0103;FS=3.369;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.14;ReadPosRankSum=-1.226;SOR=1.064;set=HC	GT:AD:AF:DP	0/1:363,82:0.18:445
chr12	56575742	rs773644	T	G	13067.77	.	AC=2;AF=1.00;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	1/1:0,449:1.00:449
chr12	56601237	rs703823	A	G	7197.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr12	56604416	rs10532115	GAT	G	10903.73	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr12	56604420	rs79677444	T	C	10911.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr12	56606989	.	G	GT	117.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.955;ClippingRankSum=0.000;DP=101;ExcessHet=3.0103;FS=1.360;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.71;ReadPosRankSum=1.107;SOR=0.420;set=HC	GT:AD:AF:DP	0/1:50,19:0.28:69
chr12	56607017	rs142653337	C	T	385.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:46,24:0.34:70
chr12	56607927	rs4759218	C	T	12488.77	.	AC=2;AF=1.00;AN=2;DB;DP=455;set=Intersection	GT:AD:AF:DP	1/1:0,449:1.00:449
chr12	56625045	rs1274497	T	C	15799.77	.	AC=2;AF=1.00;AN=2;DB;DP=562;set=Intersection	GT:AD:AF:DP	1/1:0,556:1.00:556
chr12	56629276	rs901073	A	C	7891.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr12	56647911	rs808919	G	C	16491.77	.	AC=2;AF=1.00;AN=2;DB;DP=618;set=Intersection	GT:AD:AF:DP	1/1:0,614:1.00:614
chr12	56649601	rs1274490	A	G	3592.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr12	56650742	rs1274491	C	T	3777.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr12	56664041	rs11543260	G	A	4266.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.926;ClippingRankSum=0.000;DB;DP=1073;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.01;ReadPosRankSum=0.007;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:777,286:0.27:1063
chr12	56693822	.	C	T	1032.77	.	AC=1;AF=0.500;AN=2;DP=58;set=Intersection	GT:AD:AF:DP	0/1:11,47:0.81:58
chr12	56713844	rs9645801	G	A	3737.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:52,134:0.72:186
chr12	56717466	rs773665	C	T	6024.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr12	56719305	.	C	G	757.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.341;ClippingRankSum=0.000;DP=255;ExcessHet=3.0103;FS=4.788;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.04;ReadPosRankSum=0.299;SOR=0.405;set=HC	GT:AD:AF:DP	0/1:195,54:0.22:249
chr12	56722060	rs1918496	T	G	15050.77	.	AC=2;AF=1.00;AN=2;DB;DP=555;set=Intersection	GT:AD:AF:DP	1/1:0,553:1.00:553
chr12	56726518	rs2643626	G	A	7569.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr12	56744033	.	G	GA	350.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.625;ClippingRankSum=0.000;DP=300;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=3.771;QD=1.43;ReadPosRankSum=-0.036;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:194,52:0.21:246
chr12	56744091	rs4759016	A	C	1350.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:166,67:0.29:233
chr12	56814256	rs10631263	G	GGAT	10242.73	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr12	56814563	rs66491720	G	A	1330.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.469;ClippingRankSum=0.000;DB;DP=468;ExcessHet=3.0103;FS=0.659;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.87;ReadPosRankSum=0.825;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:371,93:0.20:464
chr12	56814570	rs812279	T	G	8256.77	.	AC=1;AF=0.500;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	0/1:93,348:0.79:441
chr12	56814653	rs2291739	G	A	2073.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.958;ClippingRankSum=0.000;DB;DP=563;ExcessHet=3.0103;FS=1.312;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.74;ReadPosRankSum=-1.270;SOR=0.867;set=HC	GT:AD:AF:DP	0/1:421,134:0.24:555
chr12	56815281	rs2291738	T	C	2937.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.205;ClippingRankSum=0.000;DB;DP=750;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.97;ReadPosRankSum=-0.418;SOR=0.768;set=HC	GT:AD:AF:DP	0/1:548,192:0.26:740
chr12	56815922	rs774047	C	T	7004.77	.	AC=1;AF=0.500;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	0/1:103,296:0.74:399
chr12	56818982	rs12824030	G	C	6911.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr12	56818983	rs35382350	C	CT	3136.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:26,124:0.83:150
chr12	56821998	rs774026	A	G	1888.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:18,75:0.81:93
chr12	56822378	rs774027	T	A	7753.77	.	AC=1;AF=0.500;AN=2;DB;DP=492;set=Intersection	GT:AD:AF:DP	0/1:145,339:0.70:484
chr12	56822641	rs774028	G	C	2051.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr12	56825311	rs774033	C	T	11218.77	.	AC=1;AF=0.500;AN=2;DB;DP=711;set=Intersection	GT:AD:AF:DP	0/1:195,506:0.72:701
chr12	56825981	rs774039	A	G	1665.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:19,58:0.75:77
chr12	56826061	rs774040	G	A	6852.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr12	56826737	rs67816652	C	CA	103.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.353;ClippingRankSum=0.000;DB;DP=215;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.475;QD=0.80;ReadPosRankSum=-0.910;SOR=0.806;set=HC	GT:AD:AF:DP	0/1:94,36:0.28:130
chr12	56826758	rs11171845	A	G	340.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.547;ClippingRankSum=0.000;DB;DP=370;ExcessHet=3.0103;FS=0.943;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=-0.425;QD=0.97;ReadPosRankSum=5.086;SOR=0.855;set=HC	GT:AD:AF:DP	0/1:291,61:0.17:352
chr12	56827694	rs2279665	C	G	917.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.884;ClippingRankSum=0.000;DB;DP=273;ExcessHet=3.0103;FS=6.001;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.50;ReadPosRankSum=1.637;SOR=1.136;set=HC	GT:AD:AF:DP	0/1:209,53:0.20:262
chr12	56827974	rs2638312	C	T	17343.77	.	AC=2;AF=1.00;AN=2;DB;DP=684;set=Intersection	GT:AD:AF:DP	1/1:0,668:1.00:668
chr12	56828056	rs11171846	C	T	4290.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:44,175:0.80:219
chr12	56845296	rs2643622	T	C	4200.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.82;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,128:1.00:128
chr12	56845296	.	TAGCAACG	CAGCAACA,CAGCAACG	1257	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.33;FR=0.5000,0.5000;HP=1;HapScore=1;MGOF=12;MMLQ=30;MQ=60.0;NF=8,38;NR=19,69;PP=356,1257;QD=15.1654768467;SC=GGGGACAGAGTAGCAACGCTG;SbPval=0.75;Source=Platypus;TC=108;TCF=38;TCR=70;TR=27,107;WE=56845311;WS=56845286;set=Platypus	GT:AF:DP	0/1:0.25:108
chr12	56845303	rs2088155	G	A	588.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.293;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=0.805;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.12;ReadPosRankSum=-0.053;SOR=0.872;set=HC	GT:AD:AF:DP	0/1:82,33:0.29:115
chr12	56845358	rs7953824	T	C	1011.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:12,38:0.76:50
chr12	56862886	rs2657881	T	C	11793.77	.	AC=2;AF=1.00;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	1/1:0,440:1.00:440
chr12	56863068	rs117958275	C	T	4074.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.480;ClippingRankSum=0.000;DB;DP=1218;ExcessHet=3.0103;FS=0.619;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.41;ReadPosRankSum=-0.552;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:912,283:0.24:1195
chr12	56866669	.	C	CT	81.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.199;ClippingRankSum=0.000;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=0.000;QD=0.95;ReadPosRankSum=3.030;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:63,23:0.27:86
chr12	56866962	rs2657878	C	T	1060.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.288;ClippingRankSum=0.000;DB;DP=314;ExcessHet=3.0103;FS=1.082;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.000;QD=3.49;ReadPosRankSum=-0.914;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:234,70:0.23:304
chr12	56869577	rs5798384	C	CT	13226.73	.	AC=2;AF=1.00;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	1/1:0,355:1.00:355
chr12	56869949	rs34325581	C	CT	2700.73	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:4,118:0.97:122
chr12	56869971	rs79174190	TTTGTCACCC	T	3647.73	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr12	56872770	rs34646954	GA	G	493.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.890;ClippingRankSum=0.000;DB;DP=208;ExcessHet=3.0103;FS=2.548;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.297;QD=2.64;ReadPosRankSum=0.529;SOR=0.443;set=HC	GT:AD:AF:DP	0/1:112,75:0.40:187
chr12	56915761	rs374537234	TTC	T	46.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.232;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=1.873;MLEAC=1;MLEAF=0.500;MQ=57.91;MQRankSum=-0.307;QD=1.23;ReadPosRankSum=1.259;SOR=0.260;set=HC	GT:AD:AF:DP	0/1:32,6:0.16:38
chr12	56915782	rs808929	G	A	2090.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr12	56933651	rs2657902	G	A	14342.77	.	AC=2;AF=1.00;AN=2;DB;DP=547;set=Intersection	GT:AD:AF:DP	1/1:0,541:1.00:541
chr12	56933722	rs2657903	G	A	5803.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr12	56956213	rs3759091	T	C	4248.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr12	56956416	rs116982837	G	T	1502.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.888;ClippingRankSum=0.000;DB;DP=471;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=0.000;QD=3.23;ReadPosRankSum=0.136;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:359,106:0.23:465
chr12	56982290	rs2470385	C	T	1661.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr12	56992630	rs2242497	C	G	10001.77	.	AC=2;AF=1.00;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	1/1:2,365:0.99:367
chr12	56993714	rs2256341	C	T	31781.77	.	AC=2;AF=1.00;AN=2;DB;DP=1154;set=Intersection	GT:AD:AF:DP	1/1:0,1148:1.00:1148
chr12	56999549	rs202234970	CT	C	327.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.413;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=4.788;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.488;QD=2.17;ReadPosRankSum=0.063;SOR=0.360;set=HC	GT:AD:AF:DP	0/1:109,42:0.28:151
chr12	57030026	rs2255074	T	C	23564.77	.	AC=2;AF=1.00;AN=2;DB;DP=907;set=Intersection	GT:AD:AF:DP	1/1:2,892:1.00:894
chr12	57033680	rs12229457	T	A	3272.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr12	57034015	.	A	AT	416.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.781;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=2.988;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=0.751;QD=8.68;ReadPosRankSum=-0.077;SOR=1.417;set=HC	GT:AD:AF:DP	0/1:16,32:0.67:48
chr12	57123039	rs63335961	C	CA	61.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.065;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=3.396;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=0.000;QD=1.44;ReadPosRankSum=0.000;SOR=0.209;set=HC	GT:AD:AF:DP	0/1:29,14:0.33:43
chr12	57139722	.	C	CA	138.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.513;ClippingRankSum=0.000;DP=59;ExcessHet=3.0103;FS=6.474;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.72;ReadPosRankSum=0.670;SOR=0.114;set=HC	GT:AD:AF:DP	0/1:35,16:0.31:51
chr12	57140410	.	TCACACA	T,TCA	4302.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.708;ClippingRankSum=0.000;DP=191;ExcessHet=3.0103;FS=2.957;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.14;MQRankSum=0.136;QD=35.56;ReadPosRankSum=0.509;SOR=2.035;set=HC	GT:AD:AF:DP	1/2:6,46,69:0.38,0.57:121
chr12	57180855	rs4277148	C	T	2369.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr12	57346828	rs4319546	C	T	1351.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:76,65:0.46:141
chr12	57486647	rs324019	A	G	2773.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:118,130:0.52:248
chr12	57492996	rs841718	G	A	639.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:51,30:0.37:81
chr12	57559809	rs1800174	G	A	8281.77	.	AC=1;AF=0.500;AN=2;DB;DP=797;set=Intersection	GT:AD:AF:DP	0/1:398,380:0.49:778
chr12	57561379	rs1800175	G	T	2494.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:133,111:0.45:244
chr12	57561451	rs1800176	C	T	990.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:29,38:0.57:67
chr12	57567180	rs1800177	G	T	3291.77	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:181,160:0.47:341
chr12	57567762	rs1800194	C	T	2407.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:119,112:0.48:231
chr12	57569513	rs1800180	G	A	4924.77	.	AC=1;AF=0.500;AN=2;DB;DP=439;set=Intersection	GT:AD:AF:DP	0/1:221,206:0.48:427
chr12	57578288	rs1800181	C	T	850.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:32,37:0.54:69
chr12	57579727	rs1800182	A	T	4285.77	.	AC=1;AF=0.500;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	0/1:249,197:0.44:446
chr12	57581028	rs6581127	C	G	11718.77	.	AC=2;AF=1.00;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	1/1:0,412:1.00:412
chr12	57585144	rs1800139	C	T	2813.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:137,136:0.50:273
chr12	57587839	rs1800187	C	T	844.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:54,42:0.44:96
chr12	57588977	rs1799739	CG	C	16297.73	.	AC=1;AF=0.500;AN=2;DB;DP=997;set=Intersection	GT:AD:AF:DP	0/1:469,516:0.52:985
chr12	57589659	rs1800154	C	T	6525.77	.	AC=1;AF=0.500;AN=2;DB;DP=651;set=Intersection	GT:AD:AF:DP	0/1:347,299:0.46:646
chr12	57589784	rs7397167	A	C	23320.77	.	AC=2;AF=1.00;AN=2;DB;DP=845;set=Intersection	GT:AD:AF:DP	1/1:0,841:1.00:841
chr12	57589865	rs1800189	C	T	6542.77	.	AC=1;AF=0.500;AN=2;DB;DP=720;set=Intersection	GT:AD:AF:DP	0/1:390,322:0.45:712
chr12	57590735	rs7308552	T	C	2968.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr12	57590758	rs1800191	C	T	1808.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:82,82:0.50:164
chr12	57590797	rs1800156	C	T	3500.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:158,165:0.51:323
chr12	57590869	rs7308698	T	C	17796.77	.	AC=2;AF=1.00;AN=2;DB;DP=668;set=Intersection	GT:AD:AF:DP	1/1:0,664:1.00:664
chr12	57591226	rs1800165	T	C	6789.77	.	AC=1;AF=0.500;AN=2;DB;DP=638;set=Intersection	GT:AD:AF:DP	0/1:328,303:0.48:631
chr12	57591458	rs1800166	C	T	2468.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:98,110:0.53:208
chr12	57592557	rs1800168	C	T	1716.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:109,83:0.43:192
chr12	57593101	rs1140648	G	A	6949.77	.	AC=1;AF=0.500;AN=2;DB;DP=651;set=Intersection	GT:AD:AF:DP	0/1:317,326:0.51:643
chr12	57593894	rs1800159	A	G	916.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:29,37:0.56:66
chr12	57594980	rs34949484	C	T	3912.77	.	AC=1;AF=0.500;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	0/1:179,185:0.51:364
chr12	57595066	rs9669595	G	A	1133.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:60,49:0.45:109
chr12	57602815	rs7956957	C	G	1132.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:65,54:0.45:119
chr12	57603417	rs1800162	A	G	2819.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:125,139:0.53:264
chr12	57604802	rs1800164	A	G	1941.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:59,82:0.58:141
chr12	57605168	rs10783814	T	C	13798.77	.	AC=2;AF=1.00;AN=2;DB;DP=520;set=Intersection	GT:AD:AF:DP	1/1:0,512:1.00:512
chr12	57606386	rs7304504	A	G	4329.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr12	57610616	.	GCCGCCGCTC	G	447.73	.	AC=2;AF=1.00;AN=2;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.90;QD=40.70;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr12	57614958	rs7134826	G	T	12608.77	.	AC=2;AF=1.00;AN=2;DB;DP=494;set=Intersection	GT:AD:AF:DP	1/1:0,481:1.00:481
chr12	57618619	rs61736007	G	A	1126.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:51,54:0.51:105
chr12	57619209	rs7979061	C	G	10267.77	.	AC=2;AF=1.00;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	1/1:2,362:0.99:364
chr12	57619362	rs10783816	G	A	9181.77	.	AC=1;AF=0.500;AN=2;DB;DP=870;set=Intersection	GT:AD:AF:DP	0/1:409,448:0.52:857
chr12	57627717	rs34095989	G	A	3989.77	.	AC=1;AF=0.500;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	0/1:246,186:0.43:432
chr12	57637854	rs150268069	T	A	3057.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:108,132:0.55:240
chr12	57639190	rs7139342	C	T	668.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr12	57643318	rs35971501	G	GC	707.73	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:43,31:0.42:74
chr12	57649840	rs4075325	C	T	5061.77	.	AC=1;AF=0.500;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	0/1:232,241:0.51:473
chr12	57652093	.	T	TTTTA	140.06	.	AC=2;AF=1.00;AN=2;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr12	57652963	rs6581131	G	A	271.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:9,11:0.55:20
chr12	57691990	rs34608793	AC	A	736.73	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:33,25:0.43:58
chr12	57693060	rs4760126	G	A	3985.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr12	57703935	rs7139302	G	A	1050.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:37,47:0.56:84
chr12	57704005	rs57612216	GA	G	3022.73	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:9,162:0.95:171
chr12	57829129	rs560048	C	T	531.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:23,23:0.50:46
chr12	57843014	rs776037	C	T	4334.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr12	57843711	rs2229357	G	A	2207.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:115,96:0.45:211
chr12	57845706	rs2280139	G	A	787.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.466;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=3.540;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.71;ReadPosRankSum=0.111;SOR=0.868;set=HC	GT:AD:AF:DP	0/1:27,35:0.56:62
chr12	57848639	rs3809114	G	A	1126.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:46,53:0.54:99
chr12	57848708	rs3809113	C	G	4796.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr12	57857354	rs10876987	T	C	2005.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:106,88:0.45:194
chr12	57858414	rs3817475	A	G	3944.77	.	AC=1;AF=0.500;AN=2;DB;DP=453;set=Intersection	GT:AD:AF:DP	0/1:237,207:0.47:444
chr12	57858835	rs3817474	G	A	3099.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:173,153:0.47:326
chr12	57859431	rs2228225	G	A	5686.77	.	AC=1;AF=0.500;AN=2;DB;DP=484;set=Intersection	GT:AD:AF:DP	0/1:208,260:0.56:468
chr12	57859932	rs2292657	G	A	2090.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:73,91:0.55:164
chr12	57865321	rs2228224	G	A	4355.77	.	AC=1;AF=0.500;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	0/1:230,203:0.47:433
chr12	57865821	rs2228226	G	C	4051.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:131,165:0.56:296
chr12	57865928	rs474058	A	C	1763.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr12	57869241	rs527226	T	C	6483.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr12	57869447	rs2277318	T	C	2355.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:123,106:0.46:229
chr12	57869476	rs2277317	G	A	2873.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.473;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=4.462;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.117;QD=16.81;ReadPosRankSum=0.006;SOR=1.025;set=HC	GT:AD:AF:DP	0/1:94,77:0.45:171
chr12	57869486	rs2277316	A	G	2881.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.365;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=6.682;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.099;QD=17.15;ReadPosRankSum=0.455;SOR=1.136;set=HC	GT:AD:AF:DP	0/1:91,77:0.46:168
chr12	57869500	rs524522	A	C	5267.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr12	57869530	rs3216740	CA	C	2943.73	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:92,96:0.51:188
chr12	57869582	rs2277315	T	C	3251.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:166,150:0.47:316
chr12	57870121	rs486699	A	C	4823.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr12	57870155	rs11544238	A	C	2432.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:151,114:0.43:265
chr12	57870463	rs10706671	AG	A	6565.73	.	AC=1;AF=0.500;AN=2;DB;DP=389;MQ=60.06;set=Intersection	GT:AD:AF:DP	0/1:188,193:0.51:381
chr12	57870648	rs512490	A	G	1863.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr12	57871555	rs3825080	A	G	4286.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr12	57882764	.	CT	C	153.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.043;ClippingRankSum=0.000;DP=147;ExcessHet=3.0103;FS=0.800;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.807;QD=1.09;ReadPosRankSum=-1.054;SOR=0.580;set=HC	GT:AD:AF:DP	0/1:111,30:0.21:141
chr12	57883801	rs899653	G	A	6352.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr12	57891804	rs537161	T	C	5251.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr12	57905687	rs1284467	A	G	11011.77	.	AC=2;AF=1.00;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	1/1:0,394:1.00:394
chr12	57908449	rs190740773	G	A	1225.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:60,49:0.45:109
chr12	57920262	rs2127318	T	G	5208.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr12	57940728	.	G	T	287.77	.	AC=1;AF=0.500;AN=2;DP=54;set=Intersection	GT:AD:AF:DP	0/1:32,20:0.38:52
chr12	57940749	rs775325	C	T	1599.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.24;SOR=0.957;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr12	57958313	rs775322	A	G	1695.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:88,84:0.49:172
chr12	57968738	rs11172254	G	A	691.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:14,28:0.67:42
chr12	57969558	rs192960012	C	T	4127.77	.	AC=1;AF=0.500;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	0/1:205,194:0.49:399
chr12	57975570	rs775247	A	G	1427.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr12	57976829	rs189141503	T	C	2660.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:120,127:0.51:247
chr12	57979190	rs1678536	C	G	3465.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:157,167:0.52:324
chr12	57985204	rs11537654	C	T	8270.77	.	AC=1;AF=0.500;AN=2;DB;DP=767;set=Intersection	GT:AD:AF:DP	0/1:377,387:0.51:764
chr12	57994743	rs775235	T	G	10308.77	.	AC=2;AF=1.00;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	1/1:0,375:1.00:375
chr12	57995089	rs812873	T	C	8129.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr12	57995168	rs374429413	A	G	2837.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:157,135:0.46:292
chr12	58000378	rs703834	G	A	8366.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr12	58002599	rs2306390	C	T	8494.77	.	AC=1;AF=0.500;AN=2;DB;DP=821;set=Intersection	GT:AD:AF:DP	0/1:412,400:0.49:812
chr12	58003922	rs10437954	G	A	1411.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr12	58008952	rs703833	C	T	5148.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr12	58009202	rs2277322	T	C	3146.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:173,152:0.47:325
chr12	58010163	rs1564374	A	G	3465.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:163,174:0.52:337
chr12	58013175	rs2277324	G	A	525.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:23,23:0.50:46
chr12	58015494	rs923828	G	A	2714.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:127,137:0.52:264
chr12	58017701	rs7314152	T	G	4526.77	.	AC=1;AF=0.500;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	0/1:201,208:0.51:409
chr12	58018979	rs1871417	C	T	4715.77	.	AC=1;AF=0.500;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	0/1:211,215:0.50:426
chr12	58019472	rs774895	T	G	7808.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr12	58026001	rs2307095	G	A	5011.77	.	AC=1;AF=0.500;AN=2;DB;DP=475;set=Intersection	GT:AD:AF:DP	0/1:220,236:0.52:456
chr12	58089413	rs3825078	A	T	4376.77	.	AC=1;AF=0.500;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	0/1:221,205:0.48:426
chr12	58090232	rs72303843	AGTCGG	A	678.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.277;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=1.025;MLEAC=1;MLEAF=0.500;MQ=60.58;MQRankSum=2.950;QD=10.61;ReadPosRankSum=1.270;SOR=0.492;set=HC	GT:AD:AF:DP	0/1:43,21:0.33:64
chr12	58090245	rs67496996	GC	G	103.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.188;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=1.552;MLEAC=1;MLEAF=0.500;MQ=60.92;MQRankSum=0.814;QD=2.73;ReadPosRankSum=0.946;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:28,10:0.26:38
chr12	58090301	rs12426511	G	A	329.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:14,17:0.55:31
chr12	58110062	rs141328077	T	TG	53.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.472;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.17;ReadPosRankSum=0.739;SOR=0.202;set=HC	GT:AD:AF:DP	0/1:38,8:0.17:46
chr12	58112189	rs799265	A	G	1081.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:37,46:0.55:83
chr12	58124534	rs2301551	C	G	863.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:50,45:0.47:95
chr12	58124803	rs238523	C	T	3272.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.50;SOR=1.512;set=HC	GT:AD:AF:DP	1/1:0,119:1.00:119
chr12	58126234	rs17852479	C	A	6536.77	.	AC=1;AF=0.500;AN=2;DB;DP=626;set=Intersection	GT:AD:AF:DP	0/1:297,305:0.51:602
chr12	58127766	rs238526	T	C	1819.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr12	58129302	rs149789274	A	AC	415.73	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:22,21:0.49:43
chr12	58129330	rs374323061	G	A	387.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:17,16:0.48:33
chr12	58135659	rs238530	T	C	9051.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	1/1:1,335:1.00:336
chr12	58142854	rs2069506	C	A	2186.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:126,102:0.45:228
chr12	58144665	rs2069502	C	T	2640.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:154,129:0.46:283
chr12	58145156	rs2270777	C	T	2161.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:118,100:0.46:218
chr12	58149446	rs1689582	C	T	1580.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr12	58150989	rs35101706	CCA	C	5583.73	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr12	58157988	rs4646536	A	G	1506.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:58,60:0.51:118
chr12	58163304	rs3216815	CT	C	15046.73	.	AC=1;AF=0.500;AN=2;DB;DP=863;set=Intersection	GT:AD:AF:DP	0/1:413,441:0.52:854
chr12	58165085	rs10877013	C	T	1916.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.370;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=3.843;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.13;ReadPosRankSum=-2.294;SOR=0.438;set=HC	GT:AD:AF:DP	0/1:76,82:0.52:158
chr12	58174306	rs923829	T	C	3201.77	.	AC=1;AF=0.500;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	0/1:171,161:0.48:332
chr12	58176614	rs10747783	T	C	4639.77	.	AC=1;AF=0.500;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	0/1:221,213:0.49:434
chr12	58177379	rs5798416	CT	C	880.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.998;ClippingRankSum=0.000;DB;DP=256;ExcessHet=3.0103;FS=1.299;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.923;QD=4.32;ReadPosRankSum=-0.844;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:113,91:0.45:204
chr12	58177437	rs2014886	C	T	1018.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:43,49:0.53:92
chr12	58177943	rs1599932	G	A	721.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:37,34:0.48:71
chr12	58196447	rs10783847	G	A	4855.77	.	AC=1;AF=0.500;AN=2;DB;DP=496;set=Intersection	GT:AD:AF:DP	0/1:256,232:0.48:488
chr12	58196528	rs10783848	G	A	1290.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:75,57:0.43:132
chr12	58202419	rs2277326	C	A	335.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:8,13:0.62:21
chr12	58203354	rs3825079	C	T	4488.77	.	AC=1;AF=0.500;AN=2;DB;DP=486;set=Intersection	GT:AD:AF:DP	0/1:252,221:0.47:473
chr12	58204283	rs2172521	T	C	4876.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr12	58208164	rs1021469	G	A	866.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:35,42:0.55:77
chr12	58335626	rs3751325	A	T	2663.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:161,132:0.45:293
chr12	59197223	rs1148531	A	G	597.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr12	59199648	rs1497232	A	G	805.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:30,38:0.56:68
chr12	59282702	rs17533647	T	C	7088.77	.	AC=1;AF=0.500;AN=2;DB;DP=708;set=Intersection	GT:AD:AF:DP	0/1:344,354:0.51:698
chr12	60127590	rs2706309	A	T	1178.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:67,60:0.47:127
chr12	60127612	rs2711672	G	A	757.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:43,37:0.46:80
chr12	60129896	rs2706306	A	T	398.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:14,17:0.55:31
chr12	60161941	rs35166468	G	GA	1383.73	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:68,66:0.49:134
chr12	60173356	rs3763980	A	T	4611.77	.	AC=1;AF=0.500;AN=2;DB;DP=519;set=Intersection	GT:AD:AF:DP	0/1:283,229:0.45:512
chr12	62104219	rs7399207	A	C	3136.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:122,138:0.53:260
chr12	62114671	rs7485027	T	C	5307.77	.	AC=1;AF=0.500;AN=2;DB;DP=510;set=Intersection	GT:AD:AF:DP	0/1:248,250:0.50:498
chr12	62261077	rs34255534	G	GA	1470.73	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:119,105:0.47:224
chr12	62705960	rs17120331	A	G	363.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:18,17:0.49:35
chr12	62708442	rs10877825	G	A	177.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:12,9:0.43:21
chr12	62778065	rs2044846	A	G	1048.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:44,48:0.52:92
chr12	62783843	rs17097891	C	T	1122.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:51,53:0.51:104
chr12	62785524	rs1532435	T	C	189.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:21,10:0.32:31
chr12	62810962	rs10459254	G	A	2130.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:89,112:0.56:201
chr12	62861111	rs6581450	T	C	2874.77	.	AC=1;AF=0.500;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	0/1:179,147:0.45:326
chr12	62883990	rs11393430	C	CT	998.73	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:54,36:0.40:90
chr12	62888729	rs7135893	C	T	71.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:9,4:0.31:13
chr12	62892905	rs4025987	C	G	840.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:85,43:0.34:128
chr12	62894780	rs140022963	GTAT	G	202.73	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr12	62902420	rs7294404	C	T	659.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:14,25:0.64:39
chr12	62926398	rs7957417	G	A	5241.77	.	AC=1;AF=0.500;AN=2;DB;DP=536;set=Intersection	GT:AD:AF:DP	0/1:279,250:0.47:529
chr12	62928633	rs10219555	G	A	2500.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:159,126:0.44:285
chr12	62928747	rs11364534	TA	T	4713.73	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr12	62931846	rs147032464	ATTTGT	A	857.73	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:55,59:0.52:114
chr12	62943371	rs10877874	G	A	614.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:38,30:0.44:68
chr12	62959137	rs11174549	A	G	2354.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:142,117:0.45:259
chr12	62959184	rs77837648	A	T	1118.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:62,51:0.45:113
chr12	62972210	rs5798648	G	GT	148.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.412;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.97;ReadPosRankSum=1.653;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:35,15:0.30:50
chr12	62986620	rs12357	G	A	1711.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:69,73:0.51:142
chr12	62996678	.	T	G	4853.77	.	AC=1;AF=0.500;AN=2;DP=458;MQ=60.02;set=Intersection	GT:AD:AF:DP	0/1:232,223:0.49:455
chr12	62997180	rs10877887	T	C	369.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:7,17:0.71:24
chr12	63083521	rs11174604	G	A	2467.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:162,127:0.44:289
chr12	63087901	rs2270482	C	T	2784.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:107,129:0.55:236
chr12	63113828	rs342170	T	C	1326.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr12	63114156	rs2270484	A	G	1594.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:72,70:0.49:142
chr12	63359011	rs699595	A	T	2238.73	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.07;SOR=2.964;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr12	63359549	rs143590555	ACTGCTG	A	12468.73	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:1,282:1.00:283
chr12	63359803	rs67148667	T	TAAAAAAAA	2890.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.201;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.40;MQRankSum=-0.158;QD=33.61;ReadPosRankSum=-1.578;SOR=0.365;set=HC	GT:AD:AF:DP	1/1:2,84:0.98:86
chr12	63543552	.	TC	T	56.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.889;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;FS=7.691;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.29;ReadPosRankSum=0.753;SOR=2.904;set=HC	GT:AD:AF:DP	0/1:33,11:0.25:44
chr12	63543553	rs10747984	C	T	663.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.492;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=10.951;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.59;ReadPosRankSum=-1.023;SOR=0.041;set=HC	GT:AD:AF:DP	0/1:11,29:0.72:40
chr12	63543554	.	TC	T	49.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.030;ClippingRankSum=0.000;DP=51;ExcessHet=3.0103;FS=7.718;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.08;ReadPosRankSum=0.622;SOR=2.765;set=HC	GT:AD:AF:DP	0/1:35,11:0.24:46
chr12	63543557	rs139122077	C	T	73.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.560;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=4.927;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.48;ReadPosRankSum=-0.689;SOR=2.080;set=HC	GT:AD:AF:DP	0/1:42,8:0.16:50
chr12	63543578	rs10784341	T	A	586.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.020;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.15;ReadPosRankSum=1.135;SOR=0.302;set=HC	GT:AD:AF:DP	0/1:81,33:0.29:114
chr12	63543578	.	TCA	ACA	736	.	AC=1;AF=0.500;AN=2;BRF=0.34;FR=1.0000,0.5000;HP=2;HapScore=1;MGOF=35;MMLQ=23;MQ=59.17;NF=40,29;NR=7,3;PP=736,569;QD=16.399387501;SC=TCTCTCTCTCTCACACACACA;SbPval=0.69;Source=Platypus;TC=161;TCF=133;TCR=28;TR=47,32;WE=63543589;WS=63543566;set=Platypus	GT:AD:AF:DP	0/1:114,47:0.29:161
chr12	63543578	.	TCA	T	736	.	AC=1;AF=0.500;AN=2;BRF=0.34;FR=1.0000,0.5000;HP=2;HapScore=1;MGOF=35;MMLQ=23;MQ=59.17;NF=40,29;NR=7,3;PP=736,569;QD=16.399387501;SC=TCTCTCTCTCTCACACACACA;SbPval=0.69;Source=Platypus;TC=161;TCF=133;TCR=28;TR=47,32;WE=63543589;WS=63543566;set=Platypus	GT:AD:AF:DP	0/1:96,32:0.25:128
chr12	63544209	rs1042615	A	G	6303.77	.	AC=1;AF=0.500;AN=2;DB;DP=643;set=Intersection	GT:AD:AF:DP	0/1:332,296:0.47:628
chr12	64011062	rs4105524	A	G	6197.77	.	AC=1;AF=0.500;AN=2;DB;DP=663;set=Intersection	GT:AD:AF:DP	0/1:356,307:0.46:663
chr12	64041195	.	C	CATAATAATA	417.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.308;ClippingRankSum=0.000;DP=69;ExcessHet=3.0103;FS=1.364;MLEAC=1;MLEAF=0.500;MQ=57.23;MQRankSum=-5.494;QD=11.29;ReadPosRankSum=-0.671;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:24,13:0.35:37
chr12	64055347	rs112964973	G	GA	277.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.134;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=4.337;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.11;ReadPosRankSum=0.551;SOR=2.694;set=HC	GT:AD:AF:DP	0/1:7,18:0.72:25
chr12	64057447	rs35598493	CAGA	C	5224.73	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:151,138:0.48:289
chr12	64061745	rs11175110	C	G	673.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:22,32:0.59:54
chr12	64078548	rs61935227	G	A	3541.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.416;ClippingRankSum=0.000;DB;DP=247;ExcessHet=3.0103;FS=1.008;MLEAC=1;MLEAF=0.500;MQ=56.61;MQRankSum=-0.749;QD=14.64;ReadPosRankSum=-0.395;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:145,97:0.40:242
chr12	64078557	rs61935228	C	T	3700.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.465;ClippingRankSum=0.000;DB;DP=267;ExcessHet=3.0103;FS=0.969;MLEAC=1;MLEAF=0.500;MQ=56.78;MQRankSum=-1.334;QD=14.13;ReadPosRankSum=-0.142;SOR=0.618;set=HC	GT:AD:AF:DP	0/1:159,103:0.39:262
chr12	64078612	rs61935229	G	A	2784.77	.	AC=1;AF=0.500;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	0/1:207,140:0.40:347
chr12	64118558	rs3864455	A	G	1922.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:122,89:0.42:211
chr12	64383670	rs3741607	T	C	9232.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:0,343:1.00:343
chr12	64472803	rs789710	A	T	10205.77	.	AC=2;AF=1.00;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	1/1:1,380:1.00:381
chr12	64474023	.	C	CA	42.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.634;ClippingRankSum=0.000;DP=118;ExcessHet=3.0103;FS=4.733;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.000;QD=0.41;ReadPosRankSum=2.030;SOR=1.529;set=HC	GT:AD:AF:DP	0/1:85,20:0.19:105
chr12	64485593	rs5798729	A	ACC	3279.73	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr12	64491002	rs72161524	GT	G	250.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.533;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=0.863;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.93;ReadPosRankSum=-2.046;SOR=0.883;set=HC	GT:AD:AF:DP	0/1:90,40:0.31:130
chr12	64519806	rs789722	T	C	4449.77	.	AC=1;AF=0.500;AN=2;DB;DP=476;set=Intersection	GT:AD:AF:DP	0/1:247,222:0.47:469
chr12	64521567	rs10878106	C	G	8502.77	.	AC=1;AF=0.500;AN=2;DB;DP=724;set=Intersection	GT:AD:AF:DP	0/1:339,379:0.53:718
chr12	64587633	rs699638	C	A	5223.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr12	64609562	rs2335390	C	T	5240.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr12	64661209	rs1657057	AT	CC	691.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr12	64668659	rs6581534	G	T	1849.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:142,95:0.40:237
chr12	64669018	rs5798743	AT	A	468.73	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:10,15:0.60:25
chr12	64669090	rs1002392	C	A	949.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:55,45:0.45:100
chr12	64669270	rs10878132	C	G	384.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:47,20:0.30:67
chr12	64671412	rs10624687	C	CTA,CTATA	7521.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-2.101;ClippingRankSum=0.000;DB;DP=298;ExcessHet=3.0103;FS=1.467;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=28.07;ReadPosRankSum=0.514;SOR=0.375;set=HC	GT:AD:AF:DP	1/2:19,128,121:0.48,0.45:268
chr12	64678416	rs12581905	G	A	5761.77	.	AC=1;AF=0.500;AN=2;DB;DP=544;set=Intersection	GT:AD:AF:DP	0/1:262,273:0.51:535
chr12	64679694	.	C	CA	184.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.181;ClippingRankSum=0.000;DP=288;ExcessHet=3.0103;FS=6.848;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=3.014;QD=0.68;ReadPosRankSum=0.443;SOR=0.323;set=HC	GT:AD:AF:DP	0/1:224,47:0.17:271
chr12	64697635	rs10878142	T	G	349.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:15,14:0.48:29
chr12	64712511	rs7955105	A	G	9828.77	.	AC=2;AF=1.00;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	1/1:0,374:1.00:374
chr12	64803798	rs11175383	A	C	1862.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:132,96:0.42:228
chr12	64819222	.	C	T	1954.77	.	AC=1;AF=0.500;AN=2;DP=170;set=Intersection	GT:AD:AF:DP	0/1:75,92:0.55:167
chr12	64838752	rs71092967	TA	T	1130.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.233;ClippingRankSum=0.000;DB;DP=211;ExcessHet=3.0103;FS=0.689;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=1.752;QD=6.61;ReadPosRankSum=2.393;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:67,104:0.61:171
chr12	64858100	rs57810028	A	AT	1014.73	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:46,57:0.55:103
chr12	64879903	rs7487627	A	G	623.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:20,28:0.58:48
chr12	64891401	rs71092972	C	CT	488.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.176;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=5.105;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.04;ReadPosRankSum=0.967;SOR=1.146;set=HC	GT:AD:AF:DP	0/1:51,46:0.47:97
chr12	65004316	rs3741747	T	C	1290.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:61,53:0.46:114
chr12	65004387	rs3741748	C	T	4085.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.040;ClippingRankSum=0.000;DB;DP=403;ExcessHet=3.0103;FS=0.364;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.29;ReadPosRankSum=0.449;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:200,197:0.50:397
chr12	65004520	rs77813527	A	G	3927.77	.	AC=1;AF=0.500;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	0/1:208,186:0.47:394
chr12	65004550	rs117122731	G	A	2263.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:131,109:0.45:240
chr12	65134536	rs1690277	C	G	258.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:29,13:0.31:42
chr12	65146532	rs1147096	C	T	1677.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:52,77:0.60:129
chr12	65146676	rs1147095	T	C	1158.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:58,53:0.48:111
chr12	65150485	rs2620733	C	T	2804.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:197,145:0.42:342
chr12	65222347	rs1144426	C	G	1103.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:63,49:0.44:112
chr12	65225826	.	C	CA	377.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.025;ClippingRankSum=0.000;DP=86;ExcessHet=3.0103;FS=3.693;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.66;ReadPosRankSum=-1.561;SOR=1.244;set=HC	GT:AD:AF:DP	0/1:51,30:0.37:81
chr12	65232699	rs3741740	C	T	1512.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:57,64:0.53:121
chr12	65269047	rs939875	G	A	6237.77	.	AC=1;AF=0.500;AN=2;DB;DP=585;set=Intersection	GT:AD:AF:DP	0/1:284,295:0.51:579
chr12	65449071	rs1026025	A	G	1597.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:47,70:0.60:117
chr12	65460368	rs3782498	A	G	1675.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:54,64:0.54:118
chr12	65462429	rs72205564	ATGTGTGTGTG	A,ATGTGTGTG	3073.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.586;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.24;MQRankSum=0.353;QD=26.96;ReadPosRankSum=-0.118;SOR=1.456;set=HC	GT:AD:AF:DP	1/2:3,49,62:0.43,0.54:114
chr12	65477560	.	C	CCCTTT	581.73	.	AC=2;AF=1.00;AN=2;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.82;QD=41.55;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr12	65477609	.	C	CTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTT	419.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.542;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=16.646;MLEAC=1;MLEAF=0.500;MQ=59.45;MQRankSum=0.000;QD=11.99;ReadPosRankSum=-1.841;SOR=3.906;set=HC	GT:AD:AF:DP	0/1:29,6:0.17:35
chr12	65477613	rs150722125	TTTC	T	1115.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.352;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=6.109;MLEAC=1;MLEAF=0.500;MQ=58.04;MQRankSum=3.126;QD=22.77;ReadPosRankSum=2.536;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:20,29:0.59:49
chr12	65514266	rs7301320	T	C	4088.77	.	AC=1;AF=0.500;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	0/1:182,207:0.53:389
chr12	65609675	rs67170565	G	GT	149.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.667;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.43;MQRankSum=0.000;QD=7.49;ReadPosRankSum=0.076;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:10,10:0.50:20
chr12	65609707	rs34604927	G	GT	328.73	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:29,23:0.44:52
chr12	65612499	rs11610822	G	A	139.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr12	65633880	rs34562240	GTGAT	G	2985.73	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:112,81:0.42:193
chr12	65639615	rs3217456	ATTTT	A	1376.73	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:61,39:0.39:100
chr12	65762703	rs57910895	AC	A	368.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.340;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=1.462;QD=5.50;ReadPosRankSum=-1.381;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:45,22:0.33:67
chr12	65856899	rs61921506	C	T	2891.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr12	65881702	rs11175783	C	T	8986.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.78;SOR=1.040;set=HC	GT:AD:AF:DP	1/1:0,292:1.00:292
chr12	66232173	rs60377295	CA	C	578.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.250;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=1.985;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=1.782;QD=6.09;ReadPosRankSum=-0.376;SOR=0.476;set=HC	GT:AD:AF:DP	0/1:48,47:0.49:95
chr12	66232355	rs73115423	T	A	2517.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:152,120:0.44:272
chr12	66245568	rs17101839	C	T	2559.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:189,140:0.43:329
chr12	66260716	rs73119894	G	A	5553.77	.	AC=1;AF=0.500;AN=2;DB;DP=598;set=Intersection	GT:AD:AF:DP	0/1:315,273:0.46:588
chr12	66346121	rs1480469	A	G	3069.77	.	AC=1;AF=0.500;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	0/1:222,162:0.42:384
chr12	66357211	rs3741427	G	T	74.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.562;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.80;ReadPosRankSum=-0.533;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:4,7:0.64:11
chr12	66517828	rs2464304	T	A	4970.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr12	66522628	rs71096072	CA	C	579.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.613;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=3.459;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.98;ReadPosRankSum=-0.101;SOR=1.194;set=HC	GT:AD:AF:DP	0/1:32,65:0.67:97
chr12	66531694	rs1185629	A	G	3122.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr12	66533329	rs11176056	A	G	1606.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:2,64:0.97:66
chr12	66546100	rs8793	A	G	14391.77	.	AC=2;AF=1.00;AN=2;DB;DP=553;set=Intersection	GT:AD:AF:DP	1/1:0,549:1.00:549
chr12	66597419	rs1185630	T	A	700.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:33,30:0.48:63
chr12	66605228	rs1152888	A	G	691.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:48,36:0.43:84
chr12	66696255	rs3741605	T	C	1911.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:92,87:0.49:179
chr12	66696410	rs3741604	C	T	5939.77	.	AC=1;AF=0.500;AN=2;DB;DP=601;set=Intersection	GT:AD:AF:DP	0/1:296,293:0.50:589
chr12	66698438	rs2118139	G	A	737.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:42,32:0.43:74
chr12	66698461	rs2118140	A	G	1315.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:65,55:0.46:120
chr12	66698895	rs4430553	T	C	2466.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:78,112:0.59:190
chr12	66698954	rs1971302	C	G	2768.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr12	66716345	rs68047161	CAAA	C	2282.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.131;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=5.355;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=0.369;QD=26.86;ReadPosRankSum=-0.274;SOR=3.442;set=HC	GT:AD:AF:DP	1/1:6,79:0.93:85
chr12	66717692	rs7969887	T	G	2891.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr12	66717716	rs7957877	C	T	3842.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr12	66725137	rs17180665	C	T	5041.77	.	AC=1;AF=0.500;AN=2;DB;DP=526;set=Intersection	GT:AD:AF:DP	0/1:283,239:0.46:522
chr12	66725160	rs1185244	C	T	5709.77	.	AC=1;AF=0.500;AN=2;DB;DP=607;set=Intersection	GT:AD:AF:DP	0/1:327,274:0.46:601
chr12	66731864	rs1168329	C	A	1410.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:70,69:0.50:139
chr12	66732057	rs1183274	C	G	265.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:7,10:0.59:17
chr12	66771108	rs35635542	AT	A	1020.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.864;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=1.554;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.41;ReadPosRankSum=-1.058;SOR=0.461;set=HC	GT:AD:AF:DP	0/1:15,35:0.70:50
chr12	66771121	rs148141593	T	C	601.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.441;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.57;ReadPosRankSum=-0.398;SOR=0.840;set=HC	GT:AD:AF:DP	0/1:27,25:0.48:52
chr12	66786073	rs7970076	A	G	8087.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr12	66786091	rs13277	G	C	10285.77	.	AC=2;AF=1.00;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	1/1:0,377:1.00:377
chr12	66786341	rs7970771	G	A	3576.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr12	66786644	rs2270594	G	A	3507.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr12	66814466	rs7397861	C	G	3217.77	.	AC=1;AF=0.500;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	0/1:252,169:0.40:421
chr12	66814487	rs7397862	C	A	3187.77	.	AC=1;AF=0.500;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	0/1:259,171:0.40:430
chr12	66826527	rs143524823	GAAGT	G	1038.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr12	66826555	rs6581694	A	G	495.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr12	66838243	rs10878422	A	G	403.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:19,19:0.50:38
chr12	66838272	rs63070262	C	CAA	545.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.370;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.92;MQRankSum=0.037;QD=7.37;ReadPosRankSum=1.037;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:34,40:0.54:74
chr12	66849062	rs11613371	C	T	1124.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:76,56:0.42:132
chr12	66849408	rs1038923	T	C	386.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr12	66849908	rs4913434	G	A	808.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.245;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=2.174;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.84;ReadPosRankSum=1.091;SOR=1.027;set=HC	GT:AD:AF:DP	0/1:24,39:0.62:63
chr12	66849926	rs4913435	A	G	1022.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:30,47:0.61:77
chr12	66856667	rs4913301	G	A	256.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:19,12:0.39:31
chr12	66909389	rs12316942	C	T	3363.77	.	AC=1;AF=0.500;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	0/1:201,162:0.45:363
chr12	66933149	rs10219689	C	T	610.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:35,27:0.44:62
chr12	66935833	rs10878446	A	G	787.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:35,35:0.50:70
chr12	67197669	.	T	G	759.77	.	AC=1;AF=0.500;AN=2;DP=82;set=Intersection	GT:AD:AF:DP	0/1:48,32:0.40:80
chr12	67197686	rs12302592	G	A	1384.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:53,62:0.54:115
chr12	67701103	rs812325	G	A	3361.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:104,147:0.59:251
chr12	67706466	rs1060350	G	A	2467.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:137,123:0.47:260
chr12	68045403	rs10878641	G	A	1368.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:78,65:0.45:143
chr12	68045455	rs7307918	C	T	1054.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:33,47:0.59:80
chr12	68052178	rs3741644	G	T	2283.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:125,104:0.45:229
chr12	68552041	rs2234686	TA	T	1003.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.799;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=1.614;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.83;ReadPosRankSum=-0.156;SOR=0.870;set=HC	GT:AD:AF:DP	0/1:64,83:0.56:147
chr12	68552073	.	T	A	1184.77	.	AC=1;AF=0.500;AN=2;DP=104;set=Intersection	GT:AD:AF:DP	0/1:51,53:0.51:104
chr12	68646521	rs2227491	T	C	6598.77	.	AC=1;AF=0.500;AN=2;DB;DP=801;set=Intersection	GT:AD:AF:DP	0/1:445,348:0.44:793
chr12	68688939	rs7958232	C	T	3068.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr12	68696661	rs35426557	CA	C	328.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.780;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.98;ReadPosRankSum=2.120;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:25,30:0.55:55
chr12	68707287	rs2306392	G	A	1841.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:96,85:0.47:181
chr12	68707576	rs4575357	G	A	735.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:51,32:0.39:83
chr12	68708761	rs2306393	C	T	26825.77	.	AC=2;AF=1.00;AN=2;DB;DP=1009;set=Intersection	GT:AD:AF:DP	1/1:0,1002:1.00:1002
chr12	68715417	rs7964052	G	A	287.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:21,14:0.40:35
chr12	68717038	rs80219525	T	C	1070.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:50,48:0.49:98
chr12	68719216	rs2870812	G	A	2225.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr12	68720335	rs17224845	C	T	1114.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:64,54:0.46:118
chr12	68720627	rs962976	G	A	11885.77	.	AC=2;AF=1.00;AN=2;DB;DP=455;set=Intersection	GT:AD:AF:DP	1/1:0,440:1.00:440
chr12	68721040	rs962977	A	G	2767.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr12	68724951	rs3741808	G	T	11082.77	.	AC=2;AF=1.00;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	1/1:0,409:1.00:409
chr12	69042454	.	CT	C	463.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.087;ClippingRankSum=0.000;DP=365;ExcessHet=3.0103;FS=0.545;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.32;ReadPosRankSum=1.928;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:265,87:0.25:352
chr12	69042690	rs3213921	T	G	5836.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:1,206:1.00:207
chr12	69084541	rs11608404	A	G	6798.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr12	69090573	rs35640989	C	CT	583.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.841;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.42;ReadPosRankSum=-2.428;SOR=0.533;set=HC	GT:AD:AF:DP	0/1:22,40:0.65:62
chr12	69119617	.	G	GTTT	141.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.266;ClippingRankSum=-0.000;DP=32;ExcessHet=3.0103;FS=2.447;MLEAC=1;MLEAF=0.500;MQ=60.34;MQRankSum=0.623;QD=9.45;ReadPosRankSum=-1.252;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:7,8:0.53:15
chr12	69128684	rs74839420	G	A	1036.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:63,50:0.44:113
chr12	69202164	rs937283	A	G	2254.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:49,99:0.67:148
chr12	69202326	rs2870820	C	T	2983.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:95,138:0.59:233
chr12	69207162	rs1470383	G	A	991.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr12	69214081	.	A	AT	223.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.654;ClippingRankSum=0.000;DP=108;ExcessHet=3.0103;FS=0.869;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.19;ReadPosRankSum=1.040;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:76,26:0.25:102
chr12	69218038	rs2291857	T	G	421.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:17,19:0.53:36
chr12	69250548	rs3741598	C	T	5376.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr12	69263979	rs2291693	A	G	1096.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:120,58:0.33:178
chr12	69279736	rs2701085	A	G	1163.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:83,49:0.37:132
chr12	69633379	rs2305642	A	G	7154.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr12	69645864	rs490872	A	G	2515.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr12	69646914	rs2305641	G	A	2722.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.715;ClippingRankSum=0.000;DB;DP=226;ExcessHet=3.0103;FS=0.496;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.21;ReadPosRankSum=-0.029;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:99,124:0.56:223
chr12	69652336	rs5798930	G	GT	4035.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.003;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.06;MQRankSum=0.151;QD=22.80;ReadPosRankSum=0.313;SOR=0.970;set=HC	GT:AD:AF:DP	1/1:1,176:0.99:177
chr12	69653146	rs2231700	T	C	8110.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chr12	69667075	rs1463335	T	A	4806.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr12	69753595	rs622656	C	T	464.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:18,20:0.53:38
chr12	69753830	rs623853	G	A	2723.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.263;ClippingRankSum=0.000;DB;DP=253;ExcessHet=3.0103;FS=1.533;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.90;ReadPosRankSum=-0.956;SOR=0.583;set=HC	GT:AD:AF:DP	0/1:119,131:0.52:250
chr12	69753847	rs554591	T	C	2135.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.072;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=1.714;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.32;ReadPosRankSum=0.754;SOR=0.564;set=HC	GT:AD:AF:DP	0/1:103,104:0.50:207
chr12	69756762	rs10784775	G	A	2398.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.45;QD=26.65;SOR=1.295;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr12	69759551	rs11286051	AT	A	1159.73	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:92,75:0.45:167
chr12	69764388	rs2291005	A	G	469.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:26,19:0.42:45
chr12	69980447	.	C	CA	136.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.821;ClippingRankSum=0.000;DP=90;ExcessHet=3.0103;FS=2.715;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.67;ReadPosRankSum=-0.730;SOR=0.339;set=HC	GT:AD:AF:DP	0/1:61,21:0.26:82
chr12	70037520	rs61747221	G	A	3703.77	.	AC=1;AF=0.500;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	0/1:202,181:0.47:383
chr12	70065126	rs5798946	CT	C	776.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.222;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=3.009;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.40;ReadPosRankSum=-0.103;SOR=0.435;set=HC	GT:AD:AF:DP	0/1:44,61:0.58:105
chr12	70066856	rs2277389	C	T	725.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:53,35:0.40:88
chr12	70070942	rs710718	A	G	9302.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	1/1:0,354:1.00:354
chr12	70078172	rs710714	C	T	498.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:14,18:0.56:32
chr12	70088085	rs3050191	AGT	A	4737.73	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:107,122:0.53:229
chr12	70091356	rs710710	G	T	527.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr12	70091432	rs775429	T	C	1457.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr12	70178374	rs1602954	T	C	316.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:10,12:0.55:22
chr12	70190408	rs17120917	A	C	827.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:55,39:0.41:94
chr12	70195293	rs10879014	T	G	1361.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:1,44:0.98:45
chr12	70195341	rs111879916	A	ATATTTTT	2128.73	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:70,54:0.44:124
chr12	70273303	rs1240286	C	G	4360.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr12	70273985	rs7295793	T	G	3919.77	.	AC=1;AF=0.500;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	0/1:207,192:0.48:399
chr12	70274101	rs7310544	G	A	2015.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:84,90:0.52:174
chr12	70274160	rs1240287	G	A	1838.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr12	70280797	rs1612447	T	C	3734.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr12	70289124	rs139690592	G	GT	91.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.542;ClippingRankSum=0.000;DB;DP=239;ExcessHet=3.0103;FS=3.246;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.41;ReadPosRankSum=-0.082;SOR=0.991;set=HC	GT:AD:AF:DP	0/1:186,40:0.18:226
chr12	70321450	rs1239822	C	T	637.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr12	70330087	rs813147	A	G	5266.77	.	AC=1;AF=0.500;AN=2;DB;DP=531;set=Intersection	GT:AD:AF:DP	0/1:270,253:0.48:523
chr12	70747693	.	TA	T	179.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.070;ClippingRankSum=0.000;DP=222;ExcessHet=3.0103;FS=4.249;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=0.000;QD=3.00;ReadPosRankSum=-0.085;SOR=0.298;set=HC	GT:AD:AF:DP	0/1:32,28:0.47:60
chr12	70913818	rs630608	A	G	1889.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:54,74:0.58:128
chr12	70914045	rs142936338	A	AAAGT	5517.73	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:127,142:0.53:269
chr12	70915347	rs369876	A	G	8690.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;MQ=60.03;set=Intersection	GT:AD:AF:DP	1/1:0,326:1.00:326
chr12	70915486	.	TTC	T	1785.73	.	AC=1;AF=0.500;AN=2;DP=119;set=Intersection	GT:AD:AF:DP	0/1:60,48:0.44:108
chr12	70918141	rs1025407	T	G	530.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:35,30:0.46:65
chr12	70918185	rs1025408	A	G	1421.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:69,64:0.48:133
chr12	70928616	rs3752703	G	A	2268.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:165,112:0.40:277
chr12	70928724	rs582954	A	G	5502.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr12	70933687	rs919595	A	G	4557.77	.	AC=1;AF=0.500;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	0/1:199,214:0.52:413
chr12	70938176	rs4761221	G	A	911.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:55,42:0.43:97
chr12	70948833	rs2278342	A	C	771.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:30,34:0.53:64
chr12	70956475	rs59726208	C	T	1035.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:45,43:0.49:88
chr12	70956515	rs58922294	TA	T	2146.73	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:92,77:0.46:169
chr12	70984042	rs1465933	G	A	4658.77	.	AC=1;AF=0.500;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	0/1:195,204:0.51:399
chr12	70990134	.	C	CA	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.054;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.96;ReadPosRankSum=-2.398;SOR=0.926;set=HC	GT:AD:AF:DP	0/1:43,11:0.20:54
chr12	71002865	rs2717430	T	A	4265.77	.	AC=1;AF=0.500;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	0/1:238,214:0.47:452
chr12	71002893	rs2252784	C	T	4264.77	.	AC=1;AF=0.500;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	0/1:240,208:0.46:448
chr12	71003360	rs2717431	T	C	3025.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:112,131:0.54:243
chr12	71003515	rs2252674	C	T	12608.77	.	AC=1;AF=0.500;AN=2;DB;DP=724;set=Intersection	GT:AD:AF:DP	0/1:382,340:0.47:722
chr12	71003524	rs3217500	CTT	C	12331.73	.	AC=1;AF=0.500;AN=2;DB;DP=692;set=Intersection	GT:AD:AF:DP	0/1:368,322:0.47:690
chr12	71016157	rs74343147	C	T	293.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:9,11:0.55:20
chr12	71078135	rs7958846	G	C	4264.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr12	71139664	rs3803036	T	C	3072.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr12	71148135	rs143322105	C	T	1282.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:66,61:0.48:127
chr12	71158270	rs3751287	T	C	897.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.226;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.22;ReadPosRankSum=-1.108;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:32,27:0.46:59
chr12	71509607	.	ACT	A	100.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.078;ClippingRankSum=0.000;DP=141;ExcessHet=3.0103;FS=3.935;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.78;ReadPosRankSum=0.565;SOR=1.227;set=HC	GT:AD:AF:DP	0/1:114,15:0.12:129
chr12	71509836	rs1796329	C	T	1449.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr12	71511971	rs11178616	G	C	661.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:33,32:0.49:65
chr12	71522953	rs1796330	G	C	863.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr12	71523043	rs1705263	C	A	2130.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr12	71523199	.	T	TA	164.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.606;ClippingRankSum=0.000;DP=130;ExcessHet=3.0103;FS=5.188;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.000;QD=1.77;ReadPosRankSum=1.142;SOR=0.296;set=HC	GT:AD:AF:DP	0/1:70,23:0.25:93
chr12	71526677	rs1397566	A	G	3117.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr12	71531889	rs1798093	T	C	10273.77	.	AC=2;AF=1.00;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	1/1:0,376:1.00:376
chr12	71532922	rs2971392	A	C	14784.77	.	AC=1;AF=0.500;AN=2;DB;DP=1497;set=Intersection	GT:AD:AF:DP	0/1:750,718:0.49:1468
chr12	71947173	rs1148985	G	A	1848.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:54,69:0.56:123
chr12	71953540	rs3765015	G	C	472.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.150;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.13;ReadPosRankSum=-0.312;SOR=0.599;set=HC	GT:AD:AF:DP	0/1:22,14:0.39:36
chr12	71953542	rs3765016	T	G	472.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.152;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.51;ReadPosRankSum=0.037;SOR=0.825;set=HC	GT:AD:AF:DP	0/1:22,13:0.37:35
chr12	71955394	rs1280603	T	C	257.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr12	71960208	rs1797372	G	A	2660.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr12	71960329	rs1797373	G	A	3867.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr12	71960533	rs1797374	G	A	18521.77	.	AC=2;AF=1.00;AN=2;DB;DP=687;set=Intersection	GT:AD:AF:DP	1/1:2,682:1.00:684
chr12	71960584	rs1726469	T	C	20680.77	.	AC=2;AF=1.00;AN=2;DB;DP=787;set=Intersection	GT:AD:AF:DP	1/1:3,776:1.00:779
chr12	71965171	rs3816060	A	G	102.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:9,5:0.36:14
chr12	71966836	rs11178860	G	A	2858.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:102,130:0.56:232
chr12	72004091	rs17227269	T	C	292.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:36,16:0.31:52
chr12	72007084	rs7305505	G	A	1534.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:97,78:0.45:175
chr12	72013832	rs1298463	A	G	2550.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:139,121:0.47:260
chr12	72019989	rs55719302	T	TAC	5297.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.517;ClippingRankSum=0.000;DB;DP=239;ExcessHet=3.0103;FS=1.630;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=0.748;QD=24.53;ReadPosRankSum=-2.503;SOR=0.919;set=HC	GT:AD:AF:DP	0/1:32,184:0.85:216
chr12	72022556	rs1148996	C	G	684.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:27,32:0.54:59
chr12	72023336	rs66937800	TACAC	T,TACACACACAC	2171.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.429;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=28.96;ReadPosRankSum=-1.329;SOR=0.677;set=HC	GT:AD:AF:DP	1/2:4,34,37:0.45,0.49:75
chr12	72026872	rs1011331	T	C	1394.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:57,64:0.53:121
chr12	72028607	rs34399921	TA	T	483.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.997;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=1.064;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.11;ReadPosRankSum=1.359;SOR=0.452;set=HC	GT:AD:AF:DP	0/1:28,40:0.59:68
chr12	72030252	rs1149006	T	C	1249.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:82,58:0.41:140
chr12	72058416	rs3741691	G	T	1499.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:43,66:0.61:109
chr12	72067966	rs5799053	A	AT	720.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.773;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=0.897;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.61;ReadPosRankSum=-0.758;SOR=0.519;set=HC	GT:AD:AF:DP	0/1:55,54:0.50:109
chr12	72080272	rs2304269	T	C	1031.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:33,41:0.55:74
chr12	72091025	rs3741690	T	G	1096.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:64,52:0.45:116
chr12	72094530	.	T	TA	437.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.095;ClippingRankSum=0.000;DP=150;ExcessHet=3.0103;FS=1.769;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.248;QD=3.10;ReadPosRankSum=2.046;SOR=0.946;set=HC	GT:AD:AF:DP	0/1:98,43:0.30:141
chr12	72163723	rs34630382	C	CT	76.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.876;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=1.496;MLEAC=1;MLEAF=0.500;MQ=60.36;MQRankSum=2.327;QD=1.83;ReadPosRankSum=1.453;SOR=0.385;set=HC	GT:AD:AF:DP	0/1:31,11:0.26:42
chr12	72372601	rs4760816	C	T	1760.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:39,70:0.64:109
chr12	72372862	rs7305115	A	G	5843.77	.	AC=1;AF=0.500;AN=2;DB;DP=682;set=Intersection	GT:AD:AF:DP	0/1:377,300:0.44:677
chr12	72388374	rs1007023	G	T	3108.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:112,139:0.55:251
chr12	72416235	rs4290270	A	T	4476.77	.	AC=1;AF=0.500;AN=2;DB;DP=475;set=Intersection	GT:AD:AF:DP	0/1:258,216:0.46:474
chr12	73012649	rs111312234	CT	C	196.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.516;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=1.828;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.60;ReadPosRankSum=0.656;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:90,33:0.27:123
chr12	74932159	rs590352	G	C	5006.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr12	75435999	rs7969026	A	T	1443.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.796;ClippingRankSum=0.000;DB;DP=351;ExcessHet=3.0103;FS=3.230;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.31;ReadPosRankSum=4.424;SOR=0.519;set=HC	GT:AD:AF:DP	0/1:226,109:0.33:335
chr12	75687185	rs7967562	G	A	2438.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr12	75692607	rs7485576	G	A	4887.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr12	75706720	rs60971359	T	C	5119.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:2,193:0.99:195
chr12	75710004	rs10879900	C	T	2742.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr12	75710297	rs146669701	G	A	1766.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:70,70:0.50:140
chr12	75760742	rs12366348	G	A	6300.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr12	75784773	rs7978856	C	T	619.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.103;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=6.548;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.07;ReadPosRankSum=-1.191;SOR=0.189;set=HC	GT:AD:AF:DP	0/1:29,27:0.48:56
chr12	75785100	rs11180483	C	T	5909.77	.	AC=1;AF=0.500;AN=2;DB;DP=532;set=Intersection	GT:AD:AF:DP	0/1:247,283:0.53:530
chr12	75785468	rs4393363	G	A	895.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:55,41:0.43:96
chr12	75796721	rs7135440	G	T	2502.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:72,100:0.58:172
chr12	75816612	rs1543946	C	G	1063.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:53,44:0.45:97
chr12	75816814	rs144850646	G	GACA	2425.73	.	AC=1;AF=0.500;AN=2;DB;DP=133;MQ=60.08;set=Intersection	GT:AD:AF:DP	0/1:57,63:0.53:120
chr12	75874913	rs2242435	G	A	569.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:22,24:0.52:46
chr12	75875576	rs1909979	C	T	3529.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:164,161:0.50:325
chr12	75892481	rs144968885	A	T	2465.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:87,115:0.57:202
chr12	75900396	rs201846221	CA	C,CAA	463.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.234;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=3.239;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.27;MQRankSum=0.597;QD=7.60;ReadPosRankSum=-0.196;SOR=0.272;set=HC	GT:AD:AF:DP	1/2:10,32,19:0.52,0.31:61
chr12	75900702	rs2704766	G	A	3697.77	.	AC=1;AF=0.500;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	0/1:171,171:0.50:342
chr12	75901961	rs371285294	TA	T	114.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.019;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=1.159;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=2.312;QD=1.64;ReadPosRankSum=-0.569;SOR=0.453;set=HC	GT:AD:AF:DP	0/1:49,21:0.30:70
chr12	76424937	rs71716769	TTGC	T	8117.73	.	AC=2;AF=1.00;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	1/1:24,305:0.93:329
chr12	76447792	rs35076461	AT	A	637.73	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:31,41:0.57:72
chr12	76449900	rs1059143	T	C	997.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:51,48:0.48:99
chr12	76450465	rs113043714	TA	T	204.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.598;ClippingRankSum=0.000;DB;DP=282;ExcessHet=3.0103;FS=0.679;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.91;ReadPosRankSum=0.156;SOR=0.794;set=HC	GT:AD:AF:DP	0/1:172,52:0.23:224
chr12	76451696	rs2163913	T	C	1812.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:98,94:0.49:192
chr12	76461145	rs7972289	C	T	210.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:13,10:0.43:23
chr12	76762923	rs10656017	A	AAAT	626.73	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:14,16:0.53:30
chr12	76763092	rs11459293	G	GA	336.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.232;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=1.092;QD=5.81;ReadPosRankSum=-1.752;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:30,28:0.48:58
chr12	76767065	rs71311107	A	AT	1095.73	.	AC=1;AF=0.500;AN=2;DB;DP=129;MQ=60.08;set=Intersection	GT:AD:AF:DP	0/1:58,66:0.53:124
chr12	76769209	rs7299563	G	A	201.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:17,9:0.35:26
chr12	76780051	rs72247585	T	TA	245.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.307;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.31;ReadPosRankSum=-0.460;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:32,25:0.44:57
chr12	76780471	rs73137003	A	T	1966.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:69,94:0.58:163
chr12	76786349	rs4761423	G	A	4251.77	.	AC=1;AF=0.500;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	0/1:210,200:0.49:410
chr12	76804168	rs35236201	G	A	386.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:11,16:0.59:27
chr12	76804493	rs34492199	T	C	369.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:13,18:0.58:31
chr12	76805983	rs12814818	T	C	1362.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:76,62:0.45:138
chr12	76852809	rs34838249	C	T	855.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:57,43:0.43:100
chr12	77158402	.	G	A	261.77	.	AC=1;AF=0.500;AN=2;DP=44;set=Intersection	GT:AD:AF:DP	0/1:28,15:0.35:43
chr12	77158419	rs1017784	T	C	1589.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr12	77199250	rs140164197	AACTTG	A	1112.73	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:79,33:0.29:112
chr12	77202798	rs10778920	A	G	1179.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.09;SOR=1.259;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr12	77209613	.	G	GT	52.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.155;ClippingRankSum=0.000;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.50;ReadPosRankSum=-0.137;SOR=0.580;set=HC	GT:AD:AF:DP	0/1:86,19:0.18:105
chr12	77214681	rs1477748	G	A	605.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr12	77214788	rs2306142	G	A	3961.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr12	77216281	rs17813975	G	A	3918.77	.	AC=1;AF=0.500;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	0/1:253,199:0.44:452
chr12	77216330	.	ATTT	A,ATT	1277.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.571;ClippingRankSum=0.000;DP=202;ExcessHet=3.0103;FS=2.575;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.11;MQRankSum=0.771;QD=11.72;ReadPosRankSum=0.250;SOR=1.165;set=HC	GT:AD:AF:DP	1/2:16,39,54:0.36,0.50:109
chr12	77236968	rs1979743	G	A	1597.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr12	77239420	rs143729859	AAAAT	A	5937.73	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr12	77243103	.	C	CAA	341.73	.	AC=2;AF=1.00;AN=2;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.57;QD=24.41;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr12	77254207	rs35557984	GA	G	7764.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.313;ClippingRankSum=0.000;DB;DP=389;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.17;MQRankSum=0.238;QD=21.27;ReadPosRankSum=-0.610;SOR=0.414;set=HC	GT:AD:AF:DP	1/1:3,362:0.99:365
chr12	77256477	rs2047226	T	C	1829.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr12	77256681	rs2047227	T	G	14637.77	.	AC=2;AF=1.00;AN=2;DB;DP=563;set=Intersection	GT:AD:AF:DP	1/1:1,553:1.00:554
chr12	77438607	rs2242383	T	C	3742.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:131,162:0.55:293
chr12	77439696	rs80231138	A	G	928.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:49,38:0.44:87
chr12	77449790	rs310791	A	G	9244.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:0,337:1.00:337
chr12	77965811	rs17791640	C	G	902.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:31,42:0.58:73
chr12	77965859	rs17043896	G	A	4142.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.26;SOR=1.360;set=HC	GT:AD:AF:DP	1/1:0,152:1.00:152
chr12	77966076	rs17791730	T	G	794.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:49,37:0.43:86
chr12	78225374	rs10735309	A	G	10525.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	1/1:0,380:1.00:380
chr12	78334053	rs1731740	G	C	5832.77	.	AC=1;AF=0.500;AN=2;DB;DP=574;set=Intersection	GT:AD:AF:DP	0/1:293,276:0.49:569
chr12	78391958	rs11107763	A	C	351.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:8,15:0.65:23
chr12	78510374	rs2694680	T	C	542.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:24,23:0.49:47
chr12	78511755	rs300442	T	C	2049.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:64,91:0.59:155
chr12	78538648	rs411935	T	C	226.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:10,9:0.47:19
chr12	78562687	rs1726431	A	G	3369.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr12	78569059	rs2442134	G	A	3861.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr12	78570914	rs1020462	G	C	9663.77	.	AC=2;AF=1.00;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	1/1:0,351:1.00:351
chr12	78571186	rs1020461	T	C	1187.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:39,47:0.55:86
chr12	78571490	rs958836	T	C	5107.77	.	AC=1;AF=0.500;AN=2;DB;DP=516;set=Intersection	GT:AD:AF:DP	0/1:262,244:0.48:506
chr12	78573604	rs2305974	A	T	767.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:30,30:0.50:60
chr12	78582362	rs300513	T	C	2593.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr12	78582566	rs400289	A	G	4310.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr12	78590946	rs300498	A	C	1229.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr12	78590983	rs300497	A	G	1053.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:43,44:0.51:87
chr12	78591249	rs981213	C	A	474.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:10,19:0.66:29
chr12	78592992	rs11272983	ATGGGAACATTATTAC	A	2997.73	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:109,81:0.43:190
chr12	78593070	rs140965470	AAATTT	A	2458.73	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:61,64:0.51:125
chr12	78594405	rs3214044	T	A	236.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.571;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.84;ReadPosRankSum=-1.358;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:8,12:0.60:20
chr12	78598891	rs9971904	G	A	2663.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:158,129:0.45:287
chr12	79611374	rs2037743	C	T	14044.77	.	AC=2;AF=1.00;AN=2;DB;DP=534;set=Intersection	GT:AD:AF:DP	1/1:0,525:1.00:525
chr12	79611536	rs2400390	T	C	2209.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr12	79747487	rs1732664	T	C	1504.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:56,64:0.53:120
chr12	79842707	.	G	A	4605.77	.	AC=1;AF=0.500;AN=2;DP=503;set=Intersection	GT:AD:AF:DP	0/1:274,224:0.45:498
chr12	80014907	rs2307223	A	T	3393.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr12	80169497	rs5799439	TA	T	1012.74	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:8,63:0.89:71
chr12	80169697	rs369362742	CT	C	570.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.476;ClippingRankSum=0.000;DB;DP=305;ExcessHet=3.0103;FS=0.552;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.538;QD=2.23;ReadPosRankSum=-0.134;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:181,75:0.29:256
chr12	80175764	rs2111687	G	A	567.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr12	80201271	rs34190005	TTA	T	598.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr12	80216060	rs3849223	C	A	2995.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr12	80602001	rs1244908	T	C	1511.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:75,74:0.50:149
chr12	80603406	rs4842344	A	T	109.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:3,5:0.62:8
chr12	80613570	rs71717494	C	CT	191.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.093;ClippingRankSum=0.000;DB;DP=260;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.79;ReadPosRankSum=0.621;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:197,47:0.19:244
chr12	80626970	rs1451105	T	G	977.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr12	80632596	rs143126749	TTG	T	113.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.634;ClippingRankSum=0.000;DB;DP=276;ExcessHet=3.0103;FS=3.211;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.45;ReadPosRankSum=-0.715;SOR=1.121;set=HC	GT:AD:AF:DP	0/1:222,31:0.12:253
chr12	80645734	rs11438265	A	AT	2265.73	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:2,95:0.98:97
chr12	80645799	rs2100258	A	T	7029.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.08;QD=28.01;SOR=1.351;set=HC	GT:AD:AF:DP	1/1:0,251:1.00:251
chr12	80647155	rs10862083	A	G	2208.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr12	80648399	rs7295623	C	T	1530.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr12	80650276	rs147846753	T	TCAAA	2194.73	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr12	80655692	rs10778721	G	A	6305.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr12	80660499	rs7313132	T	C	430.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr12	80661189	rs11114377	T	A	1135.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.156;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.43;ReadPosRankSum=-1.494;SOR=0.631;set=HC	GT:AD:AF:DP	1/1:4,49:0.92:53
chr12	80663825	rs11324174	GA	G	1629.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.272;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=3.463;MLEAC=1;MLEAF=0.500;MQ=60.54;MQRankSum=1.275;QD=12.63;ReadPosRankSum=1.205;SOR=0.377;set=HC	GT:AD:AF:DP	0/1:22,107:0.83:129
chr12	80665397	rs4483657	A	G	4714.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:1,159:0.99:160
chr12	80672064	rs1376384	A	G	4657.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr12	80707153	rs1037335	C	T	427.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr12	80712307	rs7963215	A	C	3084.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.37;SOR=1.066;set=HC	GT:AD:AF:DP	1/1:0,117:1.00:117
chr12	80712420	rs10778725	G	A	4231.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr12	80722385	rs71094975	C	CT	1940.73	.	AC=1;AF=0.500;AN=2;DB;DP=135;MQ=60.08;set=Intersection	GT:AD:AF:DP	0/1:21,107:0.84:128
chr12	80722563	rs117040479	T	A	4001.77	.	AC=1;AF=0.500;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	0/1:201,193:0.49:394
chr12	80729948	.	CT	C	363.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.406;ClippingRankSum=0.000;DP=201;ExcessHet=3.0103;FS=1.720;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.939;QD=2.62;ReadPosRankSum=-0.963;SOR=0.965;set=HC	GT:AD:AF:DP	0/1:90,49:0.35:139
chr12	80730664	rs10862093	G	A	2662.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:2,105:0.98:107
chr12	80733078	.	G	GTTT	759.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.625;ClippingRankSum=0.000;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=0.000;QD=24.51;ReadPosRankSum=-0.582;SOR=0.477;set=HC	GT:AD:AF:DP	1/1:1,30:0.97:31
chr12	80735771	rs10778727	T	C	1729.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr12	80746234	rs147703967	G	GAAT	5078.73	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr12	80747242	rs7297767	A	G	8997.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	1/1:0,330:1.00:330
chr12	80749392	rs6539501	A	T	829.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr12	80750741	rs5799468	G	GA	3641.73	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:1,150:0.99:151
chr12	80752421	rs191027717	C	T	1587.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:104,80:0.43:184
chr12	80752660	rs2034528	A	G	1012.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr12	80760291	rs35874282	T	TTATATATATA	1506.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.85;QD=36.75;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr12	80760470	rs34113015	GT	G	2208.73	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr12	80761430	rs1551118	G	A	2590.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr12	80761465	rs2717482	G	A	3073.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr12	80762163	rs57527553	T	TC,TCC	5370.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=359;set=Intersection	GT:AF:DP	1/2:0.21,0.75:276
chr12	80762246	rs10778730	G	A	3471.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr12	80765683	rs5799469	TGAA	TAA,T	862.73	.	AC=2,0;AF=1.00,0.00;ALERT;AN=2;DB;DP=20;set=Intersection	GT:AF:DP	1/1:1.00:20
chr12	80765685	rs201680829	AAG	A	862.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.14;SOR=4.615;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr12	80765687	.	G	A	407	.	AC=2;AF=1.00;AN=2;BRF=0.15;FR=1.0000;HP=2;HapScore=2;MGOF=13;MMLQ=26;MQ=60.0;NF=16;NR=1;PP=407;QD=25.9865419145;SC=TTTCTATGAAGGCTTTGTGGT;SbPval=0.59;Source=Platypus;TC=19;TCF=18;TCR=1;TR=17;WE=80765695;WS=80765673;set=Platypus	GT:AD:AF:DP	1/1:2,17:0.89:19
chr12	80765741	rs1037336	C	T	1435.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr12	80765800	rs1551122	A	G	2890.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr12	80765933	rs10862100	C	G	1418.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr12	80765945	rs10778734	G	A	1300.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr12	80771813	rs2717477	G	A	8089.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr12	80816492	rs4482093	C	T	3385.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:145,164:0.53:309
chr12	80818204	rs185724030	C	T	3363.77	.	AC=1;AF=0.500;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	0/1:192,164:0.46:356
chr12	80818876	rs10746164	A	G	1621.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:96,80:0.45:176
chr12	80818964	rs10746165	G	T	911.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:35,41:0.54:76
chr12	80821391	rs61127339	C	CT	3216.73	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:13,151:0.92:164
chr12	80821446	rs7294514	T	C	2219.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr12	80828629	rs4128302	T	C	849.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr12	80828679	rs4128303	C	G	1116.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr12	80838012	rs10746166	T	C	973.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr12	80849328	rs4482094	G	A	2747.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr12	80855597	rs4499068	T	C	6525.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr12	80855803	rs7137294	G	A	8672.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:0,318:1.00:318
chr12	80862722	rs11614073	C	T	487.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:11,19:0.63:30
chr12	80878174	rs7311413	T	A	4817.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr12	80878181	rs56351124	C	CT	5005.73	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr12	80889165	rs145970310	T	TTTG	2262.73	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr12	80889829	rs10778752	T	A	3688.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:2,137:0.99:139
chr12	80890325	rs56929349	T	TG	10290.73	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr12	80899901	rs11114486	C	A	3294.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr12	80900397	rs12824064	C	G	4914.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr12	80933465	rs2222752	G	A	522.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr12	80933734	rs34318090	A	G	697.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:42,33:0.44:75
chr12	80935300	rs11114502	A	T	2776.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr12	81009858	.	T	TTA	44	.	AC=1;AF=0.500;AN=2;BRF=0.2;FR=0.5000;HP=3;HapScore=2;MGOF=13;MMLQ=21;MQ=60.0;NF=3;NR=0;PP=44;QD=17.6666666667;SC=ATAATCAGTTTTATATATATA;SbPval=1.0;Source=Platypus;TC=15;TCF=14;TCR=1;TR=3;WE=81009866;WS=81009848;set=Platypus	GT:AD:AF:DP	0/1:12,3:0.20:15
chr12	81072638	rs138726139	ACTTTTCTCTAATC	A	983.73	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:38,27:0.42:65
chr12	81239721	.	GA	G	104.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.030;ClippingRankSum=0.000;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.05;ReadPosRankSum=-1.306;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:32,19:0.37:51
chr12	81329536	rs2682818	A	C	9465.77	.	AC=2;AF=1.00;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	1/1:0,356:1.00:356
chr12	81528503	rs73359349	C	T	683.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:48,32:0.40:80
chr12	81528625	rs61745251	C	T	3101.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:166,152:0.48:318
chr12	81533096	rs3741980	A	G	501.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:34,22:0.39:56
chr12	81552338	rs11835646	C	T	4446.77	.	AC=1;AF=0.500;AN=2;DB;DP=515;set=Intersection	GT:AD:AF:DP	0/1:274,229:0.46:503
chr12	81624964	rs2293651	A	T	317.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:12,15:0.56:27
chr12	81627238	rs1921038	C	T	4523.77	.	AC=1;AF=0.500;AN=2;DB;DP=592;set=Intersection	GT:AD:AF:DP	0/1:341,239:0.41:580
chr12	81647065	rs2895868	G	A	3096.77	.	AC=1;AF=0.500;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	0/1:216,159:0.42:375
chr12	81647471	rs2400895	T	A	860.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:37,35:0.49:72
chr12	81653313	rs11114808	C	G	2296.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:69,101:0.59:170
chr12	81655861	rs2272501	G	C	2939.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:161,138:0.46:299
chr12	81655913	rs10862276	C	T	1811.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:60,82:0.58:142
chr12	81660963	rs35647579	C	CA	1710.73	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.76;SOR=1.276;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr12	81660977	.	CT	C	53.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.282;ClippingRankSum=0.000;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.81;ReadPosRankSum=-0.345;SOR=0.554;set=HC	GT:AD:AF:DP	0/1:49,17:0.26:66
chr12	81661039	rs12826016	G	A	1200.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:21,51:0.71:72
chr12	81661915	rs12304688	T	C	95.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.938;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=2.547;MLEAC=1;MLEAF=0.500;MQ=59.34;MQRankSum=-0.597;QD=1.77;ReadPosRankSum=4.812;SOR=0.541;set=HC	GT:AD:AF:DP	0/1:37,17:0.31:54
chr12	81661945	rs6539566	A	T	541.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr12	81671207	.	T	TA	99.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.996;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.99;ReadPosRankSum=-0.163;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:36,14:0.28:50
chr12	81688958	rs1882188	C	G	507.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr12	81688970	rs1882187	A	G	135.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:8,6:0.43:14
chr12	81695836	rs10862288	G	A	618.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr12	81696399	rs1921053	G	A	8095.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr12	81696487	rs1921052	G	A	1945.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:115,92:0.44:207
chr12	81733266	rs147870788	G	GT	73.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.090;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.05;ReadPosRankSum=3.143;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:26,10:0.28:36
chr12	81760844	rs76940768	AT	A	272.73	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:47,25:0.35:72
chr12	81769581	rs10862301	C	T	5679.77	.	AC=1;AF=0.500;AN=2;DB;DP=575;set=Intersection	GT:AD:AF:DP	0/1:287,277:0.49:564
chr12	82617279	rs7304928	G	C	2328.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr12	82751955	rs6539662	A	G	4929.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;MQ=59.91;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr12	82752633	rs4882530	G	A	6009.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr12	82783668	rs10778908	C	T	5162.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr12	82792787	rs4296098	C	A	5839.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr12	82828426	rs10683876	T	TATAAG	5671.73	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr12	82832418	rs2717448	G	A	1349.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr12	82850427	rs2731290	A	G	500.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.82;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr12	83424455	rs11115554	A	T	957.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.937;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.66;ReadPosRankSum=1.603;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:65,60:0.48:125
chr12	85257445	rs3782370	A	G	194.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,8:0.67:12
chr12	85285920	rs5799712	TA	T	325.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.370;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=3.513;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.13;ReadPosRankSum=-0.304;SOR=1.276;set=HC	GT:AD:AF:DP	0/1:63,41:0.39:104
chr12	86198594	rs11831336	A	G	12419.77	.	AC=2;AF=1.00;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	1/1:5,456:0.99:461
chr12	86198935	rs7397266	C	T	16374.77	.	AC=2;AF=1.00;AN=2;DB;DP=602;set=Intersection	GT:AD:AF:DP	1/1:0,590:1.00:590
chr12	86229843	rs1349061	C	T	1793.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:1,65:0.98:66
chr12	86229880	rs144771248	GAC	G	56.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.422;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=1.113;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.41;ReadPosRankSum=0.025;SOR=0.467;set=HC	GT:AD:AF:DP	0/1:126,14:0.10:140
chr12	86268015	rs2234762	C	G	1523.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr12	86270609	rs112838319	G	GA	1606.73	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr12	86270629	rs35124959	GT	G	2171.73	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr12	86272378	rs58553548	A	T	2730.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr12	88177722	rs1796320	G	A	7038.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr12	88177791	rs1675574	C	T	13634.77	.	AC=2;AF=1.00;AN=2;DB;DP=521;set=Intersection	GT:AD:AF:DP	1/1:0,509:1.00:509
chr12	88178271	rs112316052	TGCC	T	12248.73	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:2,283:0.99:285
chr12	88379566	rs10858676	A	G	356.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr12	88379788	rs11104703	C	T	1408.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:87,70:0.45:157
chr12	88380094	rs10777084	T	C	2011.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:68,96:0.59:164
chr12	88381506	rs11104705	T	C	603.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:25,25:0.50:50
chr12	88390284	rs10858678	G	C	1193.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:70,58:0.45:128
chr12	88391758	rs7957000	A	G	871.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:31,37:0.54:68
chr12	88422926	.	G	GT	250.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.642;ClippingRankSum=0.000;DP=146;ExcessHet=3.0103;FS=2.911;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.96;ReadPosRankSum=-0.523;SOR=1.072;set=HC	GT:AD:AF:DP	0/1:96,32:0.25:128
chr12	88440676	rs9262	G	C	4811.77	.	AC=1;AF=0.500;AN=2;DB;DP=505;set=Intersection	GT:AD:AF:DP	0/1:268,234:0.47:502
chr12	88453608	rs2471512	C	T	1101.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr12	88454594	rs11405846	T	TA	2145.73	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr12	88473049	rs2468245	C	T	4446.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr12	88478316	rs11356711	TA	T	1000.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr12	88483272	rs10717563	TA	T	7884.73	.	AC=2;AF=1.00;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	1/1:2,351:0.99:353
chr12	88496838	rs2471532	C	G	775.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr12	88505078	rs2468255	T	C	2874.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr12	88522823	rs71082425	A	AC	5966.73	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr12	88522936	rs79458642	C	CTTA	1103.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr12	88525048	rs59949315	AT	A	349.87	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.657;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=2.621;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=0.572;QD=9.72;ReadPosRankSum=-0.906;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:7,29:0.81:36
chr12	88546982	rs2468229	A	G	133.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:10,6:0.38:16
chr12	88547277	rs2468230	T	C	2765.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr12	88900246	rs10506953	G	T	286.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:17,12:0.41:29
chr12	88910307	rs2291557	C	T	98.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:12,6:0.33:18
chr12	88926072	rs4842477	C	T	319.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:17,14:0.45:31
chr12	88926290	rs11428619	C	CA	507.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.860;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=1.998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.51;ReadPosRankSum=0.710;SOR=0.421;set=HC	GT:AD:AF:DP	0/1:42,36:0.46:78
chr12	89743223	rs704075	G	A	10875.77	.	AC=2;AF=1.00;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	1/1:0,414:1.00:414
chr12	89745477	rs2279574	C	A	7701.77	.	AC=1;AF=0.500;AN=2;DB;DP=757;set=Intersection	GT:AD:AF:DP	0/1:373,381:0.51:754
chr12	89745557	rs61734372	G	A	6947.77	.	AC=1;AF=0.500;AN=2;DB;DP=637;set=Intersection	GT:AD:AF:DP	0/1:312,322:0.51:634
chr12	89819166	rs76714924	C	T	1685.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:130,83:0.39:213
chr12	89853387	.	CA	C	131.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.103;ClippingRankSum=0.000;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.46;ReadPosRankSum=0.061;SOR=0.767;set=HC	GT:AD:AF:DP	0/1:61,29:0.32:90
chr12	89853408	rs4842658	G	A	860.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:59,43:0.42:102
chr12	89853694	rs7953615	G	A	548.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:31,28:0.47:59
chr12	89861265	rs9308287	C	G	1282.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:60,54:0.47:114
chr12	89861529	rs10506972	T	C	649.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:41,34:0.45:75
chr12	89864432	rs10777167	T	A	242.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:13,11:0.46:24
chr12	89865545	rs10665702	C	CTTT	452.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.486;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.121;QD=8.71;ReadPosRankSum=-1.475;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:32,20:0.38:52
chr12	89885923	rs6538189	C	A	720.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:28,29:0.51:57
chr12	89885942	rs6538190	T	C	467.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:15,18:0.55:33
chr12	89917518	rs2230281	A	G	4868.77	.	AC=1;AF=0.500;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	0/1:206,219:0.52:425
chr12	89918677	rs11105310	C	A	225.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.271;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.10;ReadPosRankSum=1.543;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:23,14:0.38:37
chr12	89919630	rs67346689	ACC	A	785.73	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:21,24:0.53:45
chr12	90015270	rs17381270	G	A	70.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.362;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.90;ReadPosRankSum=-0.718;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:8,4:0.33:12
chr12	90015579	rs35089871	C	CA	1261.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.915;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=5.924;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.574;QD=12.02;ReadPosRankSum=2.283;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:23,82:0.78:105
chr12	90024549	.	A	AATATATAAATAT,AATATATAAATATATATATTATATAAATAT	1144.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.85;QD=40.88;SOR=3.258;set=HC	GT:AD:AF:DP	1/2:0,16,12:0.57,0.43:28
chr12	90028901	rs1050395	T	C	15292.77	.	AC=1;AF=0.500;AN=2;DB;DP=1377;set=Intersection	GT:AD:AF:DP	0/1:644,709:0.52:1353
chr12	90049367	rs17191974	C	T	464.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:16,19:0.54:35
chr12	91334194	rs4520662	T	C	144.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:21,8:0.28:29
chr12	91445303	rs2701166	G	A	1530.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:66,71:0.52:137
chr12	91449990	rs2735333	C	T	6577.77	.	AC=1;AF=0.500;AN=2;DB;DP=694;set=Intersection	GT:AD:AF:DP	0/1:364,320:0.47:684
chr12	91540128	.	C	CT	97.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.140;ClippingRankSum=-0.000;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.52;ReadPosRankSum=0.140;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:5,8:0.62:13
chr12	92539344	rs709223	T	C	1529.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:69,75:0.52:144
chr12	92539378	rs1049979	G	A	835.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:42,41:0.49:83
chr12	92539430	.	AG	A	508.73	.	AC=1;AF=0.500;AN=2;DP=35;MQ=60.31;set=Intersection	GT:AD:AF:DP	0/1:15,19:0.56:34
chr12	92816525	rs73222027	G	C	208.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:26,13:0.33:39
chr12	92818482	rs12580153	C	T	3210.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:170,155:0.48:325
chr12	92818786	rs1515565	A	G	1113.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:65,51:0.44:116
chr12	92821674	rs61935211	A	G	608.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:27,26:0.49:53
chr12	92821860	rs11284604	CT	C	4569.73	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:150,136:0.48:286
chr12	93100366	rs17020629	G	A	2158.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:114,106:0.48:220
chr12	93131203	rs2036553	A	C	5273.77	.	AC=1;AF=0.500;AN=2;DB;DP=570;set=Intersection	GT:AD:AF:DP	0/1:308,258:0.46:566
chr12	93147907	rs9669519	A	T	1074.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:56,49:0.47:105
chr12	93150102	rs924326	T	C	2222.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:90,99:0.52:189
chr12	93155399	rs200925190	GAAGAAAGAAAGAAAGA	G,GAAGA	1293.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=62.55;QD=35.94;SOR=3.026;set=HC	GT:AD:AF:DP	1/2:0,23,13:0.64,0.36:36
chr12	93155535	rs1504907	G	A	1501.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:67,74:0.52:141
chr12	93170480	.	G	A	811.77	.	AC=1;AF=0.500;AN=2;DP=46;set=Intersection	GT:AD:AF:DP	0/1:16,29:0.64:45
chr12	93196422	rs10745623	T	G	2833.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr12	93202801	rs7970286	C	T	2584.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:158,132:0.46:290
chr12	93206878	rs3925797	G	A	1873.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr12	93236402	rs7300619	C	T	1085.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.02;SOR=1.148;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr12	93236419	rs7316894	T	G	157.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.653;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.07;ReadPosRankSum=2.325;SOR=0.963;set=HC	GT:AD:AF:DP	0/1:16,10:0.38:26
chr12	93247775	rs3065021	G	GATA	1896.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr12	93258498	rs11106721	A	G	884.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:31,34:0.52:65
chr12	93289284	rs56326442	GA	G	787.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.878;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=2.683;MLEAC=1;MLEAF=0.500;MQ=60.39;MQRankSum=0.483;QD=13.58;ReadPosRankSum=1.320;SOR=0.208;set=HC	GT:AD:AF:DP	1/1:6,52:0.90:58
chr12	93609340	rs7305552	A	C	782.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr12	93721801	rs7976742	A	G	927.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:52,44:0.46:96
chr12	93721949	rs11380531	A	AC	1067.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr12	93862989	rs4761720	G	A	734.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:40,35:0.47:75
chr12	93863162	rs4761721	C	G	903.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.030;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=2.429;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.43;ReadPosRankSum=-0.293;SOR=1.109;set=HC	GT:AD:AF:DP	0/1:30,25:0.45:55
chr12	93863170	rs4761722	C	G	844.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.967;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.25;ReadPosRankSum=0.673;SOR=0.861;set=HC	GT:AD:AF:DP	0/1:29,23:0.44:52
chr12	93864474	rs1552861	A	G	710.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:30,33:0.52:63
chr12	93873089	rs34328828	C	CA	123.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.511;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.19;ReadPosRankSum=0.153;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:9,11:0.55:20
chr12	93881574	rs139138639	C	CT	214.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:12,14:0.54:26
chr12	93894779	rs6538424	A	T	55.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.064;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=2.869;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.49;ReadPosRankSum=1.742;SOR=2.165;set=HC	GT:AD:AF:DP	0/1:12,4:0.25:16
chr12	93894823	rs6538425	G	C	126.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:13,8:0.38:21
chr12	93897779	rs35963955	C	CT	871.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.393;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=5.087;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.14;ReadPosRankSum=-1.082;SOR=0.272;set=HC	GT:AD:AF:DP	0/1:33,53:0.62:86
chr12	93898249	rs7971966	A	G	488.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:11,23:0.68:34
chr12	93965032	rs41475949	G	A	839.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:31,35:0.53:66
chr12	93967035	rs930316	A	G	658.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:32,29:0.48:61
chr12	93968353	rs148353066	C	CT	675.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr12	93968378	rs35259505	CT	C	439.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:3,28:0.90:31
chr12	94543506	rs2230754	C	T	9987.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.383;ClippingRankSum=0.000;DB;DP=1049;ExcessHet=3.0103;FS=1.094;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.59;ReadPosRankSum=2.146;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:530,511:0.49:1041
chr12	94562802	rs2361358	G	A	849.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:31,37:0.54:68
chr12	94562875	rs2361359	C	G	2689.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:108,113:0.51:221
chr12	94563134	rs3214968	A	AT	1019.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.033;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.39;MQRankSum=2.225;QD=9.53;ReadPosRankSum=0.773;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:52,55:0.51:107
chr12	94575142	rs3794221	G	A	163.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:6,7:0.54:13
chr12	94603249	rs2610671	G	A	1867.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr12	94620264	rs62973962	A	AT	513.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.916;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=6.007;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.25;ReadPosRankSum=0.106;SOR=1.414;set=HC	GT:AD:AF:DP	0/1:76,45:0.37:121
chr12	94621058	rs2291333	T	C	1695.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:88,84:0.49:172
chr12	94621138	rs2291332	G	A	655.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:25,29:0.54:54
chr12	94634187	rs66824619	T	C	1074.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:48,48:0.50:96
chr12	94637557	rs864106	C	T	466.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr12	94641745	.	C	T	3617.77	.	AC=1;AF=0.500;AN=2;DP=379;set=Intersection	GT:AD:AF:DP	0/1:205,174:0.46:379
chr12	94642023	rs2230756	C	T	6956.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr12	94645255	rs2230757	A	G	12855.77	.	AC=2;AF=1.00;AN=2;DB;DP=500;set=Intersection	GT:AD:AF:DP	1/1:0,494:1.00:494
chr12	94648103	rs11107483	C	G	687.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:34,29:0.46:63
chr12	94648493	rs7980141	A	G	6228.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:1,232:1.00:233
chr12	94649103	rs865569	T	C	12905.77	.	AC=2;AF=1.00;AN=2;DB;DP=494;set=Intersection	GT:AD:AF:DP	1/1:0,488:1.00:488
chr12	94653227	rs2306664	T	C	1835.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:77,86:0.53:163
chr12	94671565	rs832507	A	G	3349.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:141,164:0.54:305
chr12	94671743	rs832506	G	C	3935.77	.	AC=1;AF=0.500;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	0/1:183,191:0.51:374
chr12	94671922	rs11341959	CA	C	4544.73	.	AC=1;AF=0.500;AN=2;DB;DP=655;set=Intersection	GT:AD:AF:DP	0/1:342,288:0.46:630
chr12	94673509	rs10713724	GC	G	2155.73	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:113,89:0.44:202
chr12	94688232	rs1880934	C	A	1351.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:46,63:0.58:109
chr12	94692628	rs144449115	AAAAG	A	3431.73	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:83,90:0.52:173
chr12	94694872	rs55787485	T	G	5051.77	.	AC=1;AF=0.500;AN=2;DB;DP=483;set=Intersection	GT:AD:AF:DP	0/1:234,237:0.50:471
chr12	94697508	.	CTT	C	228.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.612;ClippingRankSum=0.000;DP=76;ExcessHet=3.0103;FS=6.869;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.57;ReadPosRankSum=1.427;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:46,18:0.28:64
chr12	94698880	rs3803071	C	T	463.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:33,21:0.39:54
chr12	94729286	rs56215078	A	T	135.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr12	94763899	rs117829816	C	T	1336.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:58,66:0.53:124
chr12	94769758	rs4761611	A	G	1074.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:111,64:0.37:175
chr12	94769769	rs74340001	G	A	992.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.967;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=0.595;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.91;ReadPosRankSum=0.333;SOR=0.777;set=HC	GT:AD:AF:DP	0/1:109,59:0.35:168
chr12	94769945	rs10507037	A	G	44.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.204;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=5.051;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.80;ReadPosRankSum=1.759;SOR=0.042;set=HC	GT:AD:AF:DP	0/1:11,5:0.31:16
chr12	94955546	rs7297315	T	A	558.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:17,25:0.60:42
chr12	94955644	rs12307230	G	T	1284.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:69,63:0.48:132
chr12	94972290	rs2270893	C	T	3273.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:100,147:0.60:247
chr12	94975799	rs3747553	G	A	6091.77	.	AC=1;AF=0.500;AN=2;DB;DP=563;set=Intersection	GT:AD:AF:DP	0/1:283,277:0.49:560
chr12	94976084	rs3747552	T	C	4968.77	.	AC=1;AF=0.500;AN=2;DB;DP=491;set=Intersection	GT:AD:AF:DP	0/1:244,242:0.50:486
chr12	94976159	rs3747551	T	C	5088.77	.	AC=1;AF=0.500;AN=2;DB;DP=496;set=Intersection	GT:AD:AF:DP	0/1:252,238:0.49:490
chr12	94976383	rs3747550	T	A	810.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:31,34:0.52:65
chr12	95044161	rs1274523	A	C	4561.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr12	95044268	rs1274524	T	C	1938.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:86,98:0.53:184
chr12	95228007	rs2289031	T	G	1890.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr12	95322133	rs2033092	C	T	1467.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr12	95390595	rs10654978	C	CAA	1061.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.150;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.23;ReadPosRankSum=-0.503;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:3,47:0.94:50
chr12	95390810	rs7973115	G	T	817.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:28,35:0.56:63
chr12	95396669	rs6538588	A	T	2228.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr12	95397275	rs17321986	G	T	4935.77	.	AC=1;AF=0.500;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	0/1:232,242:0.51:474
chr12	95397552	rs835044	T	C	2885.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr12	95434452	rs11107870	C	T	720.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:29,34:0.54:63
chr12	95475461	.	A	AT	1178.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.571;ClippingRankSum=0.000;DP=134;ExcessHet=3.0103;FS=1.512;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=0.000;QD=13.87;ReadPosRankSum=0.552;SOR=1.312;set=HC	GT:AD:AF:DP	1/1:13,72:0.85:85
chr12	95488339	rs55905327	GA	G	675.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.780;ClippingRankSum=0.000;DB;DP=274;ExcessHet=3.0103;FS=6.957;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=2.834;QD=2.63;ReadPosRankSum=-0.924;SOR=0.362;set=HC	GT:AD:AF:DP	0/1:169,88:0.34:257
chr12	95498747	rs200852853	GAA	G,GA	4194.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.166;ClippingRankSum=0.000;DB;DP=259;ExcessHet=3.0103;FS=1.517;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.71;MQRankSum=1.021;QD=19.51;ReadPosRankSum=-0.062;SOR=1.212;set=HC	GT:AD:AF:DP	1/2:10,171,34:0.80,0.16:215
chr12	95500698	rs200338940	CAA	C	3718.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.483;ClippingRankSum=0.000;DB;DP=363;ExcessHet=3.0103;FS=1.796;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=0.000;QD=17.96;ReadPosRankSum=1.393;SOR=0.855;set=HC	GT:AD:AF:DP	0/1:84,123:0.59:207
chr12	95500700	rs10694512	A	AAAC	3071.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.251;ClippingRankSum=0.000;DB;DP=363;ExcessHet=3.0103;FS=1.796;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=0.000;QD=14.84;ReadPosRankSum=-1.057;SOR=0.554;set=HC	GT:AD:AF:DP	0/1:123,84:0.41:207
chr12	95500727	rs7138545	C	G	4547.77	.	AC=1;AF=0.500;AN=2;DB;DP=530;set=Intersection	GT:AD:AF:DP	0/1:303,224:0.43:527
chr12	95500918	rs80190035	T	C	1511.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:42,58:0.58:100
chr12	95502064	rs55931865	A	G	727.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:13,28:0.68:41
chr12	95510811	rs6419371	T	G	1477.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr12	95637137	rs34891631	CA	C	785.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.409;ClippingRankSum=0.000;DB;DP=332;ExcessHet=3.0103;FS=6.437;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=3.622;QD=3.11;ReadPosRankSum=0.562;SOR=1.142;set=HC	GT:AD:AF:DP	0/1:147,106:0.42:253
chr12	95639261	rs7979908	G	A	3446.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:130,158:0.55:288
chr12	95651888	rs6538624	T	C	222.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:15,10:0.40:25
chr12	95668406	rs73376208	T	C	1580.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:71,69:0.49:140
chr12	95693943	rs17344738	G	A	631.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:46,31:0.40:77
chr12	95694394	rs14121	G	A	1889.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:81,83:0.51:164
chr12	95702385	rs11107973	T	C	2475.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:151,129:0.46:280
chr12	95771236	rs2727663	T	C	874.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:45,43:0.49:88
chr12	95876908	rs55909014	G	A	3587.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:123,155:0.56:278
chr12	95878579	rs111254343	A	AT	1321.73	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:84,82:0.49:166
chr12	95878751	rs301036	T	G	195.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:10,8:0.44:18
chr12	95889033	rs68079125	T	C	1357.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:45,54:0.55:99
chr12	95890064	rs139217604	T	TTTTG	669.73	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:9,18:0.67:27
chr12	95897997	rs2769469	T	C	825.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr12	95927762	rs3812813	T	C	7600.77	.	AC=1;AF=0.500;AN=2;DB;DP=748;set=Intersection	GT:AD:AF:DP	0/1:351,372:0.51:723
chr12	95966944	rs4762567	A	G	1415.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:76,72:0.49:148
chr12	96076350	rs78734480	T	C	596.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:24,25:0.51:49
chr12	96106943	rs4129599	T	C	2882.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:129,127:0.50:256
chr12	96131895	rs17288108	A	G	4946.77	.	AC=1;AF=0.500;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	0/1:213,231:0.52:444
chr12	96217159	rs10777742	C	T	723.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:28,30:0.52:58
chr12	96253003	rs66876037	A	AG	1465.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr12	96260947	rs7960706	A	G	347.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:28,20:0.42:48
chr12	96263119	rs145166335	CAG	C	809.73	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:14,22:0.61:36
chr12	96263437	rs10735335	G	A	878.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=-0.890;QD=11.12;ReadPosRankSum=1.243;SOR=0.800;set=HC	GT:AD:AF:DP	0/1:43,36:0.46:79
chr12	96263437	.	GAC	AAA	2169	.	AC=1;AF=0.500;AN=2;BRF=0.35;FR=0.5000;HP=1;HapScore=4;MGOF=1;MMLQ=28;MQ=60.12;NF=3;NR=24;PP=2169;QD=82.3136249949;SC=TGAGCCATGTGACTAGAAGAC;SbPval=0.7;Source=Platypus;TC=67;TCF=9;TCR=58;TR=27;WE=96263466;WS=96263427;set=Platypus	GT:AD:AF:DP	1/0:40,27:0.40:67
chr12	96263439	rs10735336	C	A	2803.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr12	96263453	rs142067399	TTAAAGG	T	1041.73	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:28,28:0.50:56
chr12	96273291	rs10507067	A	T	231.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:6,11:0.65:17
chr12	96282427	rs77783810	T	A	889.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.289;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=4.150;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.97;ReadPosRankSum=-0.273;SOR=1.042;set=HC	GT:AD:AF:DP	0/1:94,55:0.37:149
chr12	96284650	rs6538681	A	G	3289.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr12	96292170	rs75959092	C	G	4085.77	.	AC=1;AF=0.500;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	0/1:216,192:0.47:408
chr12	96297159	rs6538683	T	C	76.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr12	96300053	rs11611425	A	T	1386.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:62,63:0.50:125
chr12	96312570	rs10777750	C	T	1350.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr12	96312686	rs12368787	C	A	2275.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:109,107:0.50:216
chr12	96313248	rs11108335	G	T	957.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:26,39:0.60:65
chr12	96337164	rs7955759	G	A	455.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr12	96337183	rs7955450	A	G	793.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr12	96337225	rs1436121	C	T	1440.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr12	96346594	rs1982138	T	C	3728.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr12	96346717	rs59309593	C	A	455.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:12,19:0.61:31
chr12	96354455	rs2043608	G	C	2448.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:102,107:0.51:209
chr12	96355949	rs3751266	T	C	244.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:16,11:0.41:27
chr12	96356048	rs112878109	A	AAC	5687.73	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr12	96356060	rs3751265	G	A	1688.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:73,77:0.51:150
chr12	96356280	rs5800239	A	AC	7656.73	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr12	96359301	rs4762657	T	G	6198.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.78;SOR=3.319;set=HC	GT:AD:AF:DP	1/1:0,152:1.00:152
chr12	96359301	.	TGGATTATATAT	GGGATAATATAC,GGGATTATATAT	2934	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.3;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=7;MMLQ=28;MQ=60.0;NF=73,121;NR=11,18;PP=2934,2447;QD=20;SC=CAGGAGTCCTTGGATTATATA;SbPval=0.61;Source=Platypus;TC=141;TCF=121;TCR=20;TR=84,139;WE=96359320;WS=96359291;set=Platypus	GT:AF:DP	0/1:0.60:141
chr12	96359306	rs112942131	T	A	3894.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.274;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.34;ReadPosRankSum=-1.756;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:61,99:0.62:160
chr12	96359312	rs112322394	T	C	4065.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.834;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=3.731;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.10;ReadPosRankSum=-1.415;SOR=0.385;set=HC	GT:AD:AF:DP	0/1:69,107:0.61:176
chr12	96359426	rs4762658	C	G	19396.77	.	AC=2;AF=1.00;AN=2;DB;DP=745;set=Intersection	GT:AD:AF:DP	1/1:0,741:1.00:741
chr12	96361514	rs10715708	GT	G	156.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.648;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=5.534;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.15;ReadPosRankSum=-0.615;SOR=1.199;set=HC	GT:AD:AF:DP	0/1:49,24:0.33:73
chr12	96371670	rs3764038	G	A	1013.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:52,47:0.47:99
chr12	96371894	rs4762659	C	T	3618.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr12	96372026	rs11454735	A	AT	361.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;MQ=62.13;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr12	96374554	rs6538693	G	A	17865.77	.	AC=2;AF=1.00;AN=2;DB;DP=412;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.79;SOR=0.703;set=HC	GT:AD:AF:DP	1/1:0,408:1.00:408
chr12	96374563	rs6538694	T	C	17655.77	.	AC=2;AF=1.00;AN=2;DB;DP=400;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.47;SOR=0.698;set=HC	GT:AD:AF:DP	1/1:0,397:1.00:397
chr12	96374614	rs7297245	C	T	9758.77	.	AC=2;AF=1.00;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	1/1:0,370:1.00:370
chr12	96374672	rs6538695	T	C	5256.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr12	96374683	rs6538696	C	T	4925.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr12	96374750	rs2270318	G	A	766.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:30,30:0.50:60
chr12	96379806	rs3213737	G	A	4634.77	.	AC=1;AF=0.500;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	0/1:226,224:0.50:450
chr12	96384063	rs55634581	A	G	2424.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:98,109:0.53:207
chr12	96384122	rs60881496	T	C	3869.77	.	AC=1;AF=0.500;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	0/1:173,186:0.52:359
chr12	96384139	rs57822148	T	C	4122.77	.	AC=1;AF=0.500;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	0/1:181,196:0.52:377
chr12	96384249	rs36014288	T	C	2391.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:165,124:0.43:289
chr12	96384345	rs17676826	T	C	533.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:45,24:0.35:69
chr12	96386630	rs76668867	T	C	3267.77	.	AC=1;AF=0.500;AN=2;DB;DP=337;MQ=60.03;set=Intersection	GT:AD:AF:DP	0/1:181,152:0.46:333
chr12	96386646	rs111580568	G	GCCCT	2611.73	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:116,72:0.38:188
chr12	96387328	rs76340566	G	A	5581.77	.	AC=1;AF=0.500;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	0/1:164,252:0.61:416
chr12	96387621	rs2302629	A	G	1974.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:98,84:0.46:182
chr12	96410677	rs201954724	CA	C	52.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.088;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=5.815;MLEAC=1;MLEAF=0.500;MQ=60.54;MQRankSum=1.279;QD=2.78;ReadPosRankSum=0.790;SOR=0.072;set=HC	GT:AD:AF:DP	0/1:11,8:0.42:19
chr12	96617304	rs2302902	C	T	700.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:26,27:0.51:53
chr12	96653501	rs4762144	C	T	6091.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr12	96660711	rs7974921	A	G	1211.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:38,44:0.54:82
chr12	96676330	rs35751611	C	A	6454.77	.	AC=1;AF=0.500;AN=2;DB;DP=670;set=Intersection	GT:AD:AF:DP	0/1:339,320:0.49:659
chr12	96677225	rs66560167	GTT	G	531.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.83;MQRankSum=0.532;QD=21.27;ReadPosRankSum=-0.050;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:2,23:0.92:25
chr12	96683173	rs11108454	G	A	491.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:18,21:0.54:39
chr12	96688732	rs11835965	C	T	380.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:30,20:0.40:50
chr12	96691355	rs5800246	T	TA	948.73	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:36,31:0.46:67
chr12	96693965	rs12230179	A	G	406.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:19,21:0.53:40
chr12	96694162	rs10777781	G	T	1168.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.18;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr12	96704958	rs11285567	TA	T	545.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.093;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=2.938;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.131;QD=4.70;ReadPosRankSum=0.947;SOR=1.026;set=HC	GT:AD:AF:DP	0/1:62,54:0.47:116
chr12	96704979	rs3759366	C	A	1618.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:46,61:0.57:107
chr12	96883245	rs3825265	G	C	1033.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr12	96894453	rs7959697	A	C	1068.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr12	96912598	rs11108564	G	A	1902.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr12	96912880	.	G	GT	260.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.143;ClippingRankSum=0.000;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.78;ReadPosRankSum=0.181;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:42,27:0.39:69
chr12	96927498	rs2160500	T	C	658.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr12	96927778	rs5800251	GT	G	2718.73	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:6,137:0.96:143
chr12	96927817	rs2111146	C	T	5138.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr12	96927972	rs2160501	A	G	3693.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr12	96927986	rs2160502	A	T	2230.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.31;SOR=1.540;set=HC	GT:AD:AF:DP	1/1:0,100:1.00:100
chr12	96929200	rs11453356	A	AT	2254.73	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr12	96958190	rs3825266	A	G	653.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:22,29:0.57:51
chr12	96974472	rs17025569	G	A	3424.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:182,167:0.48:349
chr12	96983402	rs1972587	C	T	64.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:21,6:0.22:27
chr12	96986190	rs2052293	G	A	1105.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:41,53:0.56:94
chr12	96986229	rs7311111	C	A	1199.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:86,62:0.42:148
chr12	96988037	rs815896	C	G	5281.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr12	96992494	rs815890	C	T	1303.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:79,68:0.46:147
chr12	97020673	rs10507074	T	C	830.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:49,41:0.46:90
chr12	97023937	rs9919717	A	C	680.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.908;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=2.209;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.54;ReadPosRankSum=-0.214;SOR=0.521;set=HC	GT:AD:AF:DP	0/1:26,33:0.56:59
chr12	97023991	rs1362949	C	T	416.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:12,18:0.60:30
chr12	97024016	rs35205059	TG	T	444.73	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:7,14:0.67:21
chr12	97051632	rs10710617	AT	A	166.73	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:11,13:0.54:24
chr12	97078749	rs7306382	A	G	2401.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:89,102:0.53:191
chr12	97079040	rs79677423	C	T	537.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.896;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.54;ReadPosRankSum=0.154;SOR=0.460;set=HC	GT:AD:AF:DP	0/1:39,24:0.38:63
chr12	97079041	rs7974435	C	G	2725.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.96;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr12	97079041	.	CCG	GCA	643	.	AC=2;AF=1.00;AN=2;BRF=0.24;FR=0.5000;HP=3;HapScore=2;MGOF=11;MMLQ=24;MQ=60.0;NF=3;NR=48;PP=643;QD=13.6562328404;SC=GGAAGGATCCCCGTACTAGCT;SbPval=0.52;Source=Platypus;TC=55;TCF=3;TCR=52;TR=51;WE=97079051;WS=97079030;set=Platypus	GT:AD:AF:DP	1/1:4,51:0.93:55
chr12	97079043	rs7974634	G	A	2725.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.00;SOR=3.767;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr12	97085107	rs4762319	A	C	7807.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.940;ClippingRankSum=0.000;DB;DP=283;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=28.29;ReadPosRankSum=1.179;SOR=0.715;set=HC	GT:AD:AF:DP	1/1:1,275:1.00:276
chr12	97098415	rs10860069	C	T	523.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr12	97098549	rs11108643	T	C	2212.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr12	97102578	rs7968231	G	A	5749.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr12	97102700	rs10581594	TTATA	T	1518.73	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:35,41:0.54:76
chr12	97133737	rs17326839	T	G	498.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:29,25:0.46:54
chr12	97136218	rs7978894	T	C	416.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:17,20:0.54:37
chr12	97136239	rs1990828	G	A	1448.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.87;SOR=1.009;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr12	97147503	rs1420649	G	C	2475.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:194,125:0.39:319
chr12	97151077	rs1019336	C	G	214.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:6,10:0.62:16
chr12	97158126	rs10860094	T	C	353.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:13,18:0.58:31
chr12	97158772	rs58414715	C	CT	119.73	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr12	97180430	rs11108696	C	G	1290.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:38,56:0.60:94
chr12	97211399	rs369211137	CATGTT	C	454.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.199;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.67;ReadPosRankSum=1.118;SOR=0.502;set=HC	GT:AD:AF:DP	0/1:18,13:0.42:31
chr12	97211407	.	C	CTAA	542.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.881;ClippingRankSum=0.000;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.51;ReadPosRankSum=1.024;SOR=0.502;set=HC	GT:AD:AF:DP	0/1:18,13:0.42:31
chr12	97211410	rs142077887	G	T	551.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.625;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.23;ReadPosRankSum=0.190;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:18,16:0.47:34
chr12	97211528	rs970620	A	G	1048.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:33,51:0.61:84
chr12	97254620	rs1420653	G	A	5844.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr12	97303522	rs11108735	A	G	2125.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:89,92:0.51:181
chr12	97306603	.	AT	A	119.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.446;ClippingRankSum=0.000;DP=125;ExcessHet=3.0103;FS=1.981;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.23;ReadPosRankSum=0.055;SOR=0.780;set=HC	GT:AD:AF:DP	0/1:73,24:0.25:97
chr12	97311376	rs11333833	CT	C	80.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.737;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=4.165;MLEAC=1;MLEAF=0.500;MQ=60.47;MQRankSum=2.560;QD=1.28;ReadPosRankSum=0.039;SOR=1.315;set=HC	GT:AD:AF:DP	0/1:46,17:0.27:63
chr12	97311541	rs4762339	T	C	705.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:20,33:0.62:53
chr12	97328714	rs1610921	TGCTTATAA	T	2745.73	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:71,72:0.50:143
chr12	97331219	rs67367047	GT	G	1174.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.218;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=0.703;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.028;QD=8.27;ReadPosRankSum=0.257;SOR=0.798;set=HC	GT:AD:AF:DP	0/1:72,70:0.49:142
chr12	97337199	rs249579	G	A	827.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:20,34:0.63:54
chr12	97338696	rs249585	G	A	1332.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:44,56:0.56:100
chr12	97339388	rs249589	G	C	855.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:25,35:0.58:60
chr12	97345955	rs2304697	A	G	1565.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr12	97639049	rs1012314	T	C	6125.77	.	AC=1;AF=0.500;AN=2;DB;DP=602;set=Intersection	GT:AD:AF:DP	0/1:295,292:0.50:587
chr12	97639144	rs1012315	A	G	7571.77	.	AC=1;AF=0.500;AN=2;DB;DP=733;set=Intersection	GT:AD:AF:DP	0/1:377,352:0.48:729
chr12	98332667	rs1349300	C	A	3317.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr12	98332704	rs1349299	C	G	5629.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:2,208:0.99:210
chr12	98332904	rs3072891	TCA	T	4268.73	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr12	98389204	rs146169041	C	T	4770.77	.	AC=1;AF=0.500;AN=2;DB;DP=505;set=Intersection	GT:AD:AF:DP	0/1:269,220:0.45:489
chr12	98389341	rs1477006	A	T	851.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:39,34:0.47:73
chr12	98850409	rs138528234	C	T	6924.77	.	AC=1;AF=0.500;AN=2;DB;DP=677;set=Intersection	GT:AD:AF:DP	0/1:342,329:0.49:671
chr12	98925650	rs3213901	G	T	2232.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr12	98927830	rs17459334	C	G	2449.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:113,99:0.47:212
chr12	98938416	rs34340378	G	GT	236.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.692;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.60;MQRankSum=0.000;QD=15.78;ReadPosRankSum=1.408;SOR=3.442;set=HC	GT:AD:AF:DP	1/1:1,14:0.93:15
chr12	98941223	rs10860342	A	G	1320.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:26,48:0.65:74
chr12	98985056	rs934930	T	C	3992.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr12	98993270	.	G	GT	106.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.953;ClippingRankSum=0.000;DP=76;ExcessHet=3.0103;FS=5.750;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.46;ReadPosRankSum=0.779;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:57,16:0.22:73
chr12	99020688	rs148210292	TGACA	T	143.73	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:16,6:0.27:22
chr12	99056125	rs10745833	T	A	660.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr12	99116919	rs11109582	A	G	2522.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:157,122:0.44:279
chr12	99119340	rs2304006	G	A	2213.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:130,107:0.45:237
chr12	99129497	rs10860361	G	A	3025.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr12	99129541	rs7300187	G	T	1338.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr12	99145357	rs77210491	G	A	2609.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:152,124:0.45:276
chr12	99166805	rs2287574	G	T	4021.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr12	99175091	.	AAC	A	605.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.421;ClippingRankSum=0.000;DP=284;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=0.000;QD=2.46;ReadPosRankSum=1.519;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:198,48:0.20:246
chr12	99175840	rs7954506	A	G	1463.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:90,74:0.45:164
chr12	99447139	rs3794799	C	A	1314.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:41,53:0.56:94
chr12	99478626	rs3803094	C	T	3482.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:168,164:0.49:332
chr12	99478889	rs7970088	G	A	1589.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr12	99638276	rs2712643	C	A	41.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:6,3:0.33:9
chr12	99639930	rs923724	G	C	2070.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:100,96:0.49:196
chr12	99639944	rs35408837	CT	C	1794.73	.	AC=1;AF=0.500;AN=2;DB;DP=251;MQ=60.09;set=Intersection	GT:AD:AF:DP	0/1:122,120:0.50:242
chr12	99640557	rs1552759	T	C	2809.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:188,145:0.44:333
chr12	100041939	rs34319076	AT	A	3646.73	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:132,94:0.42:226
chr12	100041942	rs79915291	T	A	3655.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:133,101:0.43:234
chr12	100042040	rs11109968	C	G	3251.77	.	AC=1;AF=0.500;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	0/1:218,159:0.42:377
chr12	100042163	rs11109969	A	G	4812.77	.	AC=1;AF=0.500;AN=2;DB;DP=529;set=Intersection	GT:AD:AF:DP	0/1:289,226:0.44:515
chr12	100169519	rs10778023	A	G	714.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:28,32:0.53:60
chr12	100173822	rs116442602	C	G	257.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.439;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.36;ReadPosRankSum=0.512;SOR=0.472;set=HC	GT:AD:AF:DP	0/1:21,14:0.40:35
chr12	100219207	rs7138513	A	G	5249.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:2,200:0.99:202
chr12	100433633	rs11110208	T	C	810.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:41,33:0.45:74
chr12	100451234	rs1388441	G	A	137.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:9,7:0.44:16
chr12	100452832	rs11832216	C	T	7461.77	.	AC=1;AF=0.500;AN=2;DB;DP=860;set=Intersection	GT:AD:AF:DP	0/1:478,372:0.44:850
chr12	100464068	rs145821926	A	ATT	460.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.903;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=2.125;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.03;ReadPosRankSum=-0.772;SOR=1.436;set=HC	GT:AD:AF:DP	0/1:21,30:0.59:51
chr12	100477080	rs74348118	T	C	202.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:9,8:0.47:17
chr12	100478156	rs142449467	TCACACACACACACACACA	T,TCACACACACA	2614.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.82;QD=32.28;SOR=1.649;set=HC	GT:AD:AF:DP	1/2:0,39,42:0.48,0.52:81
chr12	100478197	.	CACACACAG	C	2988	.	AC=1;AF=0.500;AN=2;BRF=0.27;FR=0.5000;HP=2;HapScore=1;MGOF=55;MMLQ=22;MQ=59.64;NF=18;NR=18;PP=2988;QD=20;SC=CACACACACACACACACAGAG;SbPval=0.5;Source=Platypus;TC=104;TCF=54;TCR=50;TR=36;WE=100478212;WS=100478187;set=Platypus	GT:AD:AF:DP	0/1:68,36:0.35:104
chr12	100480161	rs11338951	GA	G	127.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.447;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.53;MQRankSum=1.985;QD=6.72;ReadPosRankSum=-0.635;SOR=0.321;set=HC	GT:AD:AF:DP	0/1:12,7:0.37:19
chr12	100482866	rs17851246	G	A	2564.77	.	AC=1;AF=0.500;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	0/1:228,145:0.39:373
chr12	100496478	.	CTT	C	971.27	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.620;ClippingRankSum=0.000;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.30;ReadPosRankSum=-0.560;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:80,53:0.40:133
chr12	100502062	rs11110244	C	G	680.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:19,30:0.61:49
chr12	100522321	rs35645378	GA	G	385.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.591;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=4.479;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.28;ReadPosRankSum=0.308;SOR=1.429;set=HC	GT:AD:AF:DP	0/1:19,34:0.64:53
chr12	100550838	rs150871002	T	TGGAG	2587.73	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:107,69:0.39:176
chr12	100550905	.	T	TCCACCCTCCACCCCC	2824.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.409;ClippingRankSum=0.000;DP=321;ExcessHet=3.0103;FS=63.478;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.42;ReadPosRankSum=5.277;SOR=6.090;set=HC	GT:AD:AF:DP	0/1:207,64:0.24:271
chr12	100552813	rs17030005	C	T	3097.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:157,154:0.50:311
chr12	100598625	rs78843973	C	T	1265.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:57,56:0.50:113
chr12	100604221	rs7970382	T	G	746.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:19,32:0.63:51
chr12	100613964	rs7973815	A	G	3419.77	.	AC=1;AF=0.500;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	0/1:181,162:0.47:343
chr12	100635627	rs56098115	GAA	G	2019.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.200;ClippingRankSum=0.000;DB;DP=271;ExcessHet=3.0103;FS=3.318;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.122;QD=9.85;ReadPosRankSum=0.126;SOR=1.045;set=HC	GT:AD:AF:DP	0/1:106,99:0.48:205
chr12	100636485	rs7958895	T	C	1857.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:84,87:0.51:171
chr12	100646134	rs66721214	CA	C	1075.73	.	AC=1;AF=0.500;AN=2;DB;DP=178;MQ=60.06;set=Intersection	GT:AD:AF:DP	0/1:89,74:0.45:163
chr12	100655307	rs10860569	G	C	55.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.443;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.23;ReadPosRankSum=-0.160;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:20,5:0.20:25
chr12	100676960	rs7965910	C	A	3546.77	.	AC=1;AF=0.500;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	0/1:162,171:0.51:333
chr12	100709313	rs7968030	T	A	2501.73	.	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.06;SOR=2.862;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr12	100709420	rs10860577	C	T	3475.77	.	AC=1;AF=0.500;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	0/1:206,172:0.46:378
chr12	100713129	.	T	C	398.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.179;ClippingRankSum=0.000;DP=209;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.94;ReadPosRankSum=-1.531;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:170,36:0.17:206
chr12	100717260	rs11110340	A	T	560.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:18,25:0.58:43
chr12	100732327	rs10860580	C	T	1091.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:95,58:0.38:153
chr12	100787095	rs1998925	T	C	1422.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:62,56:0.47:118
chr12	100795794	rs11110366	A	G	374.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.533;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=4.821;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.49;ReadPosRankSum=2.499;SOR=2.376;set=HC	GT:AD:AF:DP	0/1:15,15:0.50:30
chr12	100806411	rs138819500	T	TA	351.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.010;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=1.623;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.96;ReadPosRankSum=-1.001;SOR=0.302;set=HC	GT:AD:AF:DP	0/1:33,26:0.44:59
chr12	100806503	rs11568536	C	T	2970.77	.	AC=1;AF=0.500;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	0/1:198,146:0.42:344
chr12	100811727	rs11110371	C	T	1922.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:76,87:0.53:163
chr12	100811749	rs61941805	A	C	2892.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:103,130:0.56:233
chr12	100813487	rs7967828	A	G	897.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:28,40:0.59:68
chr12	100813976	rs11568537	A	C	297.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:21,15:0.42:36
chr12	100930213	rs17030285	C	G	10046.77	.	AC=2;AF=1.00;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	1/1:0,394:1.00:394
chr12	101012490	rs7961640	G	A	2953.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr12	101017445	rs1469385	T	C	11558.77	.	AC=2;AF=1.00;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	1/1:0,418:1.00:418
chr12	101018014	rs1045602	T	C	9132.77	.	AC=1;AF=0.500;AN=2;DB;DP=859;set=Intersection	GT:AD:AF:DP	0/1:417,419:0.50:836
chr12	101018161	rs1045603	C	T	8417.77	.	AC=1;AF=0.500;AN=2;DB;DP=788;set=Intersection	GT:AD:AF:DP	0/1:383,392:0.51:775
chr12	101133912	rs4764751	G	A	2471.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:99,99:0.50:198
chr12	101381516	rs78259827	C	T	610.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:37,26:0.41:63
chr12	101381523	rs116965114	G	A	779.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:25,31:0.55:56
chr12	101433990	rs665071	A	G	1379.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr12	101473109	rs34514121	AC	A	13542.73	.	AC=2;AF=1.00;AN=2;DB;DP=501;set=Intersection	GT:AD:AF:DP	1/1:5,466:0.99:471
chr12	101473272	rs651784	G	A	1284.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr12	101491375	rs1842888	G	A	2069.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr12	101491517	rs76554907	G	A	10422.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	1/1:0,377:1.00:377
chr12	101510371	rs349661	T	G	3225.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:1,119:0.99:120
chr12	101520648	rs3832861	C	CTG	6623.73	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:3,247:0.99:250
chr12	101520689	rs1055734	A	G	6951.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:1,265:1.00:266
chr12	101520875	rs3741954	G	A	841.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr12	101552075	rs2671444	G	A	3361.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr12	101596039	rs371509538	T	C	525.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:51,24:0.32:75
chr12	101683929	rs703715	C	T	1031.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:32,48:0.60:80
chr12	101687043	rs2290720	C	T	996.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:60,49:0.45:109
chr12	101701930	rs7975348	T	C	2215.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:87,97:0.53:184
chr12	101705433	rs11405013	T	TC	849.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.235;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=2.290;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.88;ReadPosRankSum=1.614;SOR=1.136;set=HC	GT:AD:AF:DP	0/1:47,39:0.45:86
chr12	101713141	rs2290719	C	T	74.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:8,4:0.33:12
chr12	101715202	rs55721648	C	A	214.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:10,11:0.52:21
chr12	101728166	rs2002895	A	G	1763.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:100,87:0.47:187
chr12	101732655	rs56265469	C	T	1516.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:81,77:0.49:158
chr12	101734277	rs7963896	T	C	2929.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:157,141:0.47:298
chr12	101734452	rs7977402	C	T	5118.77	.	AC=1;AF=0.500;AN=2;DB;DP=527;set=Intersection	GT:AD:AF:DP	0/1:269,247:0.48:516
chr12	101736381	rs2270861	A	G	848.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:52,45:0.46:97
chr12	101750814	rs10082778	T	A	13211.77	.	AC=2;AF=1.00;AN=2;DB;DP=497;set=Intersection	GT:AD:AF:DP	1/1:0,496:1.00:496
chr12	101755683	rs7313312	T	C	3517.77	.	AC=1;AF=0.500;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	0/1:190,173:0.48:363
chr12	101757530	rs2305862	G	A	2023.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:72,85:0.54:157
chr12	101761516	rs2305859	T	G	653.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:46,29:0.39:75
chr12	101761867	rs1457564	G	T	1528.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:56,68:0.55:124
chr12	101779964	rs4764794	T	C	1634.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.530;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=-0.980;QD=10.83;ReadPosRankSum=-0.233;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:75,76:0.50:151
chr12	101790373	rs73159756	T	C	887.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:36,42:0.54:78
chr12	101873596	.	CT	C	166.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.611;ClippingRankSum=0.000;DP=191;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.45;ReadPosRankSum=1.113;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:82,33:0.29:115
chr12	101876864	.	G	GT	167.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.170;ClippingRankSum=0.000;DP=66;ExcessHet=3.0103;FS=1.972;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.41;ReadPosRankSum=4.630;SOR=1.154;set=HC	GT:AD:AF:DP	0/1:21,17:0.45:38
chr12	102008087	.	GGT	G	109	.	AC=1;AF=0.500;AN=2;BRF=0.21;FR=0.5000;HP=2;HapScore=2;MGOF=12;MMLQ=28;MQ=60.0;NF=3;NR=4;PP=109;QD=16.8571428571;SC=GATGCAGTAGGGTGTGTGTGT;SbPval=0.33;Source=Platypus;TC=17;TCF=10;TCR=7;TR=7;WE=102008096;WS=102008077;set=Platypus	GT:AD:AF:DP	1/0:10,7:0.41:17
chr12	102008103	rs825079	T	A	231.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.465;ClippingRankSum=-0.000;DB;DP=30;ExcessHet=3.0103;FS=5.315;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.91;ReadPosRankSum=0.801;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:14,12:0.46:26
chr12	102008103	.	TGA	AGA	90	.	AC=1;AF=0.500;AN=2;BRF=0.32;FR=0.5001,0.5000;HP=2;HapScore=4;MGOF=9;MMLQ=7;MQ=59.54;NF=7,3;NR=2,4;PP=27,90;QD=6.8634680608;SC=TGTGTGTGTGTGAGAGAGAGA;SbPval=0.8;Source=Platypus;TC=23;TCF=16;TCR=7;TR=9,7;WE=102008112;WS=102008093;set=Platypus	GT:AD:AF:DP	0/1:14,9:0.39:23
chr12	102008103	.	TGA	T	90	.	AC=1;AF=0.500;AN=2;BRF=0.32;FR=0.5001,0.5000;HP=2;HapScore=4;MGOF=9;MMLQ=7;MQ=59.54;NF=7,3;NR=2,4;PP=27,90;QD=6.8634680608;SC=TGTGTGTGTGTGAGAGAGAGA;SbPval=0.8;Source=Platypus;TC=23;TCF=16;TCR=7;TR=9,7;WE=102008112;WS=102008093;set=Platypus	GT:AD:AF:DP	0/1:15,7:0.32:22
chr12	102020488	rs825073	A	T	714.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:23,29:0.56:52
chr12	102046303	.	CCT	C	162.73	.	AC=1;AF=0.500;AN=2;DP=65;set=Intersection	GT:AD:AF:DP	0/1:45,11:0.20:56
chr12	102046394	rs1997205	C	T	5945.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr12	102046595	rs1997204	T	C	9533.77	.	AC=2;AF=1.00;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	1/1:0,368:1.00:368
chr12	102054812	rs10778135	C	T	217.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr12	102057166	rs2254631	T	C	1947.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr12	102061793	rs147564199	GTTAATGCT	G	1483.73	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr12	102063715	.	AAAG	A	436.73	.	AC=2;AF=1.00;AN=2;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.20;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr12	102063901	rs58177042	C	CCACA,CCACACACA	1418.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=78;set=Intersection	GT:AF:DP	1/2:0.54,0.35:37
chr12	102064118	rs7139095	T	C	13865.77	.	AC=2;AF=1.00;AN=2;DB;DP=522;set=Intersection	GT:AD:AF:DP	1/1:0,518:1.00:518
chr12	102108301	rs2066920	T	C	4194.77	.	AC=1;AF=0.500;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	0/1:183,207:0.53:390
chr12	102111173	rs1544921	G	C	3286.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;MQ=60.03;set=Intersection	GT:AD:AF:DP	0/1:169,160:0.49:329
chr12	102117589	rs11082	C	T	944.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:45,47:0.51:92
chr12	102120363	rs8181675	C	T	364.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.548;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.51;ReadPosRankSum=1.201;SOR=0.287;set=HC	GT:AD:AF:DP	0/1:12,15:0.56:27
chr12	102120363	.	CA	TG	182	.	AC=1;AF=0.500;AN=2;BRF=0.11;FR=0.5000;HP=4;HapScore=2;MGOF=2;MMLQ=28;MQ=60.0;NF=1;NR=11;PP=182;QD=19.6223229052;SC=ATGAAGCCCCCATTGTATCAT;SbPval=0.38;Source=Platypus;TC=25;TCF=1;TCR=24;TR=12;WE=102120372;WS=102120353;set=Platypus	GT:AD:AF:DP	0/1:13,12:0.48:25
chr12	102120364	rs222508	A	G	972.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.91;SOR=5.058;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr12	102131090	rs11306325	TA	T	402.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.689;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=4.985;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.081;QD=4.20;ReadPosRankSum=-0.041;SOR=0.547;set=HC	GT:AD:AF:DP	0/1:49,47:0.49:96
chr12	102147088	rs11110997	T	C	1099.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:59,49:0.45:108
chr12	102150878	rs3736475	G	C	278.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:7,11:0.61:18
chr12	102154900	rs759935	A	G	2335.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:135,120:0.47:255
chr12	102158763	rs10778148	T	C	5125.77	.	AC=1;AF=0.500;AN=2;DB;DP=538;set=Intersection	GT:AD:AF:DP	0/1:280,249:0.47:529
chr12	102182181	rs2108694	G	A	276.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:17,13:0.43:30
chr12	102183938	rs11111024	C	A	1804.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:87,80:0.48:167
chr12	102224436	rs4764655	C	T	1969.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:96,95:0.50:191
chr12	102224491	rs76300806	AGCC	A	2253.73	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:59,60:0.50:119
chr12	102295218	rs7295569	T	C	3077.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:160,146:0.48:306
chr12	102301000	rs111710026	GA	G	362.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.560;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=1.800;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.51;ReadPosRankSum=-3.280;SOR=1.356;set=HC	GT:AD:AF:DP	0/1:16,9:0.36:25
chr12	102301019	rs61936567	G	A	564.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.068;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.86;ReadPosRankSum=-0.046;SOR=0.833;set=HC	GT:AD:AF:DP	0/1:30,22:0.42:52
chr12	102301257	rs61936568	G	A	343.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:25,19:0.43:44
chr12	102301910	rs61936574	T	C	984.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.354;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.41;ReadPosRankSum=-2.354;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:33,27:0.45:60
chr12	102301915	rs61936575	T	C	1035.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.850;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.46;ReadPosRankSum=-1.833;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:38,29:0.43:67
chr12	102304685	rs56695970	T	C	1667.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:86,87:0.50:173
chr12	102305523	rs61134285	AT	A	85.73	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:11,7:0.39:18
chr12	102308095	rs7955730	C	T	5157.77	.	AC=1;AF=0.500;AN=2;DB;DP=504;set=Intersection	GT:AD:AF:DP	0/1:249,247:0.50:496
chr12	102308263	rs66919603	C	CT	147.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.106;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=5.403;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.48;ReadPosRankSum=1.608;SOR=0.095;set=HC	GT:AD:AF:DP	0/1:19,14:0.42:33
chr12	102433811	rs4237982	T	C	1007.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:77,56:0.42:133
chr12	102468734	.	TA	T	410.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.048;ClippingRankSum=0.000;DP=221;ExcessHet=3.0103;FS=4.295;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=2.864;QD=1.93;ReadPosRankSum=-0.380;SOR=0.396;set=HC	GT:AD:AF:DP	0/1:156,57:0.27:213
chr12	102576307	.	CT	C	161.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.341;ClippingRankSum=0.000;DP=138;ExcessHet=3.0103;FS=2.795;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.761;QD=1.23;ReadPosRankSum=1.529;SOR=0.420;set=HC	GT:AD:AF:DP	0/1:101,30:0.23:131
chr12	102872155	rs67214112	C	CT	1025.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:9,57:0.86:66
chr12	103234479	rs798709	A	G	1922.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr12	103237468	rs772897	G	C	6610.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr12	103240630	rs1522306	C	A	2313.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr12	103248924	rs1126758	C	T	7245.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr12	103249164	rs2251905	C	T	3745.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr12	103260608	rs2247836	T	C	1753.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr12	103271193	rs1718301	G	A	4839.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:1,176:0.99:177
chr12	103298587	rs185113258	G	A	6331.77	.	AC=1;AF=0.500;AN=2;DB;DP=697;set=Intersection	GT:AD:AF:DP	0/1:374,320:0.46:694
chr12	103352171	rs71438488	C	CGCA	1947.73	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:97,94:0.49:191
chr12	103352649	rs731682	C	G	13252.77	.	AC=1;AF=0.500;AN=2;DB;DP=1283;set=Intersection	GT:AD:AF:DP	0/1:642,638:0.50:1280
chr12	103558235	rs11111476	G	A	2099.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:123,102:0.45:225
chr12	103561786	rs3061447	C	CTA	1590.73	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:42,42:0.50:84
chr12	103561973	rs145528404	ACCAATCCAT	A	6986.73	.	AC=1;AF=0.500;AN=2;DB;DP=520;set=Intersection	GT:AD:AF:DP	0/1:290,194:0.40:484
chr12	103670917	rs12311525	A	G	4288.77	.	AC=1;AF=0.500;AN=2;DB;DP=533;set=Intersection	GT:AD:AF:DP	0/1:300,225:0.43:525
chr12	103699685	rs7488867	C	T	1925.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:107,94:0.47:201
chr12	103762084	rs138043759	G	GTC	123.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.173;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.06;MQRankSum=0.000;QD=4.42;ReadPosRankSum=2.012;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:20,8:0.29:28
chr12	103762638	rs12317808	C	G	631.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:39,26:0.40:65
chr12	103872172	rs10778257	T	G	5244.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr12	104014148	rs184552127	C	T	105.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:12,6:0.33:18
chr12	104014402	.	AAC	A	415.73	.	AC=1;AF=0.500;AN=2;DP=48;set=Intersection	GT:AD:AF:DP	0/1:16,18:0.53:34
chr12	104015999	rs703612	T	C	6143.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr12	104025219	rs10668571	T	TA,TAA	1029.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.079;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.41;MQRankSum=0.395;QD=20.59;ReadPosRankSum=-0.814;SOR=2.004;set=HC	GT:AD:AF:DP	1/2:2,22,26:0.44,0.52:50
chr12	104032074	rs1582876	A	G	509.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:18,21:0.54:39
chr12	104042736	rs697199	T	C	665.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:13,29:0.69:42
chr12	104044241	rs12829198	G	A	2264.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:111,113:0.50:224
chr12	104048592	rs831425	C	T	2647.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr12	104053955	rs11111705	A	G	1069.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:25,37:0.60:62
chr12	104067812	rs11614418	C	T	3424.77	.	AC=1;AF=0.500;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	0/1:189,174:0.48:363
chr12	104069836	rs35874368	CT	C	59.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.162;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.30;ReadPosRankSum=2.237;SOR=1.075;set=HC	GT:AD:AF:DP	0/1:15,11:0.42:26
chr12	104071158	rs72177976	TTCTC	T	2556.73	.	AC=1;AF=0.500;AN=2;DB;DP=131;MQ=60.17;set=Intersection	GT:AD:AF:DP	0/1:64,67:0.51:131
chr12	104077109	.	T	TA	283.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.312;ClippingRankSum=0.000;DP=67;ExcessHet=3.0103;FS=3.966;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.35;ReadPosRankSum=0.313;SOR=1.292;set=HC	GT:AD:AF:DP	0/1:29,24:0.45:53
chr12	104081793	rs697206	A	G	1127.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:84,57:0.40:141
chr12	104086631	rs703651	C	T	3899.77	.	AC=1;AF=0.500;AN=2;DB;DP=510;set=Intersection	GT:AD:AF:DP	0/1:295,207:0.41:502
chr12	104092996	rs697210	T	C	2822.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:119,130:0.52:249
chr12	104100617	rs697212	C	T	16211.77	.	AC=2;AF=1.00;AN=2;DB;DP=610;set=Intersection	GT:AD:AF:DP	1/1:1,607:1.00:608
chr12	104100776	.	T	C	1919.77	.	AC=1;AF=0.500;AN=2;DP=151;set=Intersection	GT:AD:AF:DP	0/1:74,74:0.50:148
chr12	104111687	rs703653	C	A	3268.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr12	104124061	rs4981042	A	G	4269.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr12	104129471	rs1946820	G	A	165.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:16,8:0.33:24
chr12	104131352	rs147914018	T	TTC	409.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.256;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=1.377;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.42;ReadPosRankSum=-1.318;SOR=1.058;set=HC	GT:AD:AF:DP	0/1:16,17:0.52:33
chr12	104131384	.	CTTT	C	823.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.572;ClippingRankSum=0.000;DP=62;ExcessHet=3.0103;FS=2.847;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.84;ReadPosRankSum=0.637;SOR=1.284;set=HC	GT:AD:AF:DP	0/1:14,38:0.73:52
chr12	104133305	.	CTG	C	171.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.297;ClippingRankSum=0.000;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.13;ReadPosRankSum=-1.118;SOR=1.302;set=HC	GT:AD:AF:DP	0/1:16,12:0.43:28
chr12	104133350	.	T	TGTGTGTGTGTGC	47.73	.	AC=1;AF=0.500;AN=2;DP=36;set=Intersection	GT:AD:AF:DP	0/1:25,6:0.19:31
chr12	104138918	rs2292687	C	T	1770.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:96,87:0.48:183
chr12	104140517	rs2056128	A	G	2063.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr12	104147207	rs3751198	A	G	3887.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr12	104149022	rs11111748	G	A	17317.77	.	AC=2;AF=1.00;AN=2;DB;DP=641;set=Intersection	GT:AD:AF:DP	1/1:0,639:1.00:639
chr12	104149251	rs7296626	C	T	15745.77	.	AC=2;AF=1.00;AN=2;DB;DP=578;set=Intersection	GT:AD:AF:DP	1/1:0,569:1.00:569
chr12	104149520	rs7313163	T	G	1638.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:79,76:0.49:155
chr12	104152856	rs3817303	G	T	1805.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:142,93:0.40:235
chr12	104153004	rs2271637	C	G	3273.77	.	AC=1;AF=0.500;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	0/1:216,163:0.43:379
chr12	104159667	rs11111755	G	A	427.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:19,19:0.50:38
chr12	104159716	rs10861094	C	A	759.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:30,31:0.51:61
chr12	104171941	rs141837728	CTT	C	511.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.274;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=2.143;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.88;ReadPosRankSum=1.980;SOR=1.080;set=HC	GT:AD:AF:DP	0/1:52,35:0.40:87
chr12	104171946	.	T	TA	561	.	AC=1;AF=0.500;AN=2;BRF=0.35;FR=0.5000;HP=6;HapScore=4;MGOF=13;MMLQ=22;MQ=60.0;NF=1;NR=36;PP=561;QD=15.7297297297;SC=CACTTCTTTTTTTAAAAAAAA;SbPval=0.62;Source=Platypus;TC=76;TCF=2;TCR=74;TR=37;WE=104171956;WS=104171931;set=Platypus	GT:AD:AF:DP	1/0:39,37:0.49:76
chr12	104171947	.	TT	AA	2026	.	AC=1;AF=0.500;AN=2;BRF=0.35;FR=0.5000;HP=6;HapScore=4;MGOF=13;MMLQ=23;MQ=60.0;NF=9;NR=41;PP=2026;QD=41.5893574972;SC=ACTTCTTTTTTTAAAAAAAAA;SbPval=0.59;Source=Platypus;TC=85;TCF=16;TCR=69;TR=50;WE=104171956;WS=104171931;set=Platypus	GT:AD:AF:DP	1/0:35,50:0.59:85
chr12	104171948	.	T	TAAA	1709.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.599;ClippingRankSum=0.000;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.38;ReadPosRankSum=0.566;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:39,54:0.58:93
chr12	104174192	rs1866292	C	T	3051.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:140,144:0.51:284
chr12	104179271	rs11111771	G	A	5744.77	.	AC=1;AF=0.500;AN=2;DB;DP=534;set=Intersection	GT:AD:AF:DP	0/1:257,267:0.51:524
chr12	104179529	rs201632707	TAAAAAAAAAAAAA	T,TA	4428.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.563;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=3.846;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=33.30;ReadPosRankSum=1.495;SOR=0.861;set=HC	GT:AD:AF:DP	1/2:4,70,59:0.53,0.44:133
chr12	104181420	rs4964823	A	T	583.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:12,22:0.65:34
chr12	104182458	rs2888792	T	C	2030.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:95,89:0.48:184
chr12	104186946	rs1866295	G	T	3766.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:160,165:0.51:325
chr12	104187092	rs1866296	G	A	7508.77	.	AC=1;AF=0.500;AN=2;DB;DP=796;set=Intersection	GT:AD:AF:DP	0/1:421,359:0.46:780
chr12	104187440	rs11111781	C	T	1579.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:39,61:0.61:100
chr12	104190523	rs12425205	G	A	2104.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr12	104190854	rs73192052	CA	TG	1353.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;JOINED;set=Intersection	GT:AD:AF:DP	0/1:27,35:0.56:62
chr12	104192506	rs10082821	A	G	1711.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:55,74:0.57:129
chr12	104235229	rs34187551	C	G	3699.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:134,158:0.54:292
chr12	104235308	rs116314589	C	G	7140.77	.	AC=1;AF=0.500;AN=2;DB;DP=686;MQ=60.06;set=Intersection	GT:AD:AF:DP	0/1:331,344:0.51:675
chr12	104237512	rs1370784	T	C	543.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:22,21:0.49:43
chr12	104237829	rs1370780	T	G	3684.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:126,157:0.55:283
chr12	104237882	rs2576974	G	A	3423.77	.	AC=1;AF=0.500;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	0/1:206,165:0.44:371
chr12	104237896	rs7966100	G	A	3922.77	.	AC=1;AF=0.500;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	0/1:228,192:0.46:420
chr12	104254753	rs11111816	G	A	539.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:27,26:0.49:53
chr12	104254932	rs11111817	G	A	1754.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:97,84:0.46:181
chr12	104260208	rs11612613	C	T	1759.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:142,92:0.39:234
chr12	104309428	rs7295489	G	C	4564.77	.	AC=1;AF=0.500;AN=2;DB;DP=486;set=Intersection	GT:AD:AF:DP	0/1:262,218:0.45:480
chr12	104309712	rs2583273	C	T	2651.77	.	AC=1;AF=0.500;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	0/1:227,137:0.38:364
chr12	104324148	rs2722187	G	A	1798.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.85;SOR=2.070;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr12	104324182	rs2070908	C	G	847.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.363;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.89;ReadPosRankSum=0.296;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:76,47:0.38:123
chr12	104325459	rs17034931	G	C	5493.77	.	AC=1;AF=0.500;AN=2;DB;DP=577;set=Intersection	GT:AD:AF:DP	0/1:286,278:0.49:564
chr12	104325649	rs2722188	T	G	949.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:45,37:0.45:82
chr12	104335750	rs58392270	TAA	T	10924.73	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr12	104359931	rs4135039	T	A	3405.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr12	104359982	rs4135040	C	A	1453.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr12	104366864	rs10627502	A	ATTTTTTT,ATTTTTTTT	3148.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.773;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.01;MQRankSum=0.000;QD=44.35;ReadPosRankSum=1.656;SOR=0.800;set=HC	GT:AD:AF:DP	1/2:2,34,35:0.48,0.49:71
chr12	104373600	rs3751209	G	A	817.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:41,43:0.51:84
chr12	104373728	rs151041931	G	GA	88.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.000;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=20.108;MLEAC=1;MLEAF=0.500;MQ=58.55;MQRankSum=-5.263;QD=1.29;ReadPosRankSum=2.748;SOR=1.428;set=HC	GT:AD:AF:DP	0/1:56,13:0.19:69
chr12	104378762	rs35589874	C	CAT	1013.73	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:44,34:0.44:78
chr12	104378826	rs4135122	C	T	362.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:12,15:0.56:27
chr12	104391473	rs4964435	G	T	497.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:22,21:0.49:43
chr12	104408955	rs73177961	T	C	2319.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:91,92:0.50:183
chr12	104459811	rs34011860	A	G	639.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:18,24:0.57:42
chr12	104459905	rs35879815	T	G	3514.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:133,153:0.53:286
chr12	104461937	rs6539123	C	T	2420.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:116,108:0.48:224
chr12	104482010	rs3763999	T	A	162.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:10,9:0.47:19
chr12	104489120	rs2272477	T	C	2815.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:113,128:0.53:241
chr12	104496724	rs35223676	C	T	1849.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:19,72:0.79:91
chr12	104515108	rs115044997	G	A	618.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:128,58:0.31:186
chr12	104529395	rs74241079	T	G	155.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.322;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=1.740;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.42;ReadPosRankSum=0.976;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:11,10:0.48:21
chr12	104618454	rs6539128	A	G	3392.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr12	104645363	rs7960443	G	A	11623.77	.	AC=2;AF=1.00;AN=2;DB;DP=439;set=Intersection	GT:AD:AF:DP	1/1:0,432:1.00:432
chr12	104645405	rs7975161	T	C	8662.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	1/1:0,332:1.00:332
chr12	104684773	rs11111981	A	C	1152.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:50,52:0.51:102
chr12	104698582	rs11111987	A	G	4865.77	.	AC=1;AF=0.500;AN=2;DB;DP=509;set=Intersection	GT:AD:AF:DP	0/1:265,234:0.47:499
chr12	104703836	rs7134193	A	G	4280.77	.	AC=1;AF=0.500;AN=2;DB;DP=502;set=Intersection	GT:AD:AF:DP	0/1:276,215:0.44:491
chr12	104703957	rs35882028	T	A	2345.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.26;SOR=3.570;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr12	104703957	.	TCT	AGA	2168	.	AC=2;AF=1.00;AN=2;BRF=0.23;FR=1.0000;HP=2;HapScore=1;MGOF=20;MMLQ=28;MQ=59.81;NF=5;NR=23;PP=2168;QD=79.6952812451;SC=GGAGTCTCACTCTGTGAGACT;SbPval=0.55;Source=Platypus;TC=34;TCF=6;TCR=28;TR=28;WE=104703980;WS=104703947;set=Platypus	GT:AD:AF:DP	1/1:6,28:0.82:34
chr12	104703958	rs34794131	C	G	2345.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.11;SOR=3.528;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr12	104703959	rs34873076	T	A	2344.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.09;SOR=3.528;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr12	104703965	rs66665385	ACTCCCAGG	A	2122.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr12	104703991	rs10861190	A	G	526.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.955;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=1.960;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.46;ReadPosRankSum=-0.884;SOR=0.235;set=HC	GT:AD:AF:DP	0/1:11,21:0.66:32
chr12	104707151	rs5018287	A	G	716.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:46,35:0.43:81
chr12	104707180	rs6539137	A	T	1326.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr12	104709559	rs4964287	C	T	3936.77	.	AC=1;AF=0.500;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	0/1:185,192:0.51:377
chr12	104714847	.	CT	C	296.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.816;ClippingRankSum=0.000;DP=386;ExcessHet=3.0103;FS=0.557;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=2.023;QD=0.82;ReadPosRankSum=0.758;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:270,93:0.26:363
chr12	104718959	rs10861201	C	A	534.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:25,23:0.48:48
chr12	104733165	rs10861202	A	G	2960.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:115,128:0.53:243
chr12	104741958	rs11112003	C	T	1047.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:40,41:0.51:81
chr12	104985289	rs1615960	A	G	1145.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr12	104985655	rs313323	C	T	1835.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr12	104995800	rs5800627	A	AT	2963.73	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:44,180:0.80:224
chr12	105260159	rs201865798	TACACACAC	T,TAC	3367.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=38.71;SOR=2.419;set=HC	GT:AD:AF:DP	1/2:0,33,54:0.38,0.62:87
chr12	105260365	rs61036188	TAA	T,TA	1477.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.722;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.06;MQRankSum=0.458;QD=10.63;ReadPosRankSum=2.063;SOR=0.807;set=HC	GT:AD:AF:DP	1/2:28,68,43:0.49,0.31:139
chr12	105380152	rs1129593	A	C	5019.77	.	AC=1;AF=0.500;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	0/1:181,231:0.56:412
chr12	105380311	rs7964906	T	C	994.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:26,38:0.59:64
chr12	105431835	rs10861315	T	G	2494.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:173,128:0.43:301
chr12	105432038	.	T	TCTCTCA	2180	.	AC=1;AF=0.500;AN=2;BRF=0.38;FR=0.5000;HP=2;HapScore=2;MGOF=25;MMLQ=28;MQ=59.03;NF=1;NR=49;PP=2180;QD=43.72;SC=TCTCTCTCTCTCACACACACA;SbPval=0.91;Source=Platypus;TC=123;TCF=6;TCR=117;TR=50;WE=105432073;WS=105432028;set=Platypus	GT:AD:AF:DP	0/1:73,50:0.41:123
chr12	105432040	rs11112328	A	T	1001.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.566;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=52.338;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.38;ReadPosRankSum=5.213;SOR=4.803;set=HC	GT:AD:AF:DP	0/1:54,34:0.39:88
chr12	105432042	rs73179912	A	T	293.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.441;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=46.731;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.91;ReadPosRankSum=4.820;SOR=5.927;set=HC	GT:AD:AF:DP	0/1:79,22:0.22:101
chr12	105432045	.	CACACACACACAA	C	688	.	AC=1;AF=0.500;AN=2;BRF=0.38;FR=0.5000;HP=2;HapScore=2;MGOF=25;MMLQ=15;MQ=58.96;NF=1;NR=49;PP=688;QD=13.94;SC=CTCTCACACACACACACACAC;SbPval=0.83;Source=Platypus;TC=111;TCF=4;TCR=107;TR=50;WE=105432073;WS=105432028;set=Platypus	GT:AD:AF:DP	0/1:61,50:0.45:111
chr12	105432047	.	CACACACACAA	C	221.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.643;ClippingRankSum=0.000;DP=145;ExcessHet=3.0103;FS=37.818;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.67;ReadPosRankSum=4.529;SOR=5.474;set=HC	GT:AD:AF:DP	0/1:65,18:0.22:83
chr12	105432075	rs188231679	C	A	516.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.274;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=24.002;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.28;ReadPosRankSum=4.142;SOR=3.758;set=HC	GT:AD:AF:DP	0/1:48,23:0.32:71
chr12	105433463	rs4964120	C	T	2948.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:176,147:0.46:323
chr12	105433523	rs4964317	T	A	5450.77	.	AC=1;AF=0.500;AN=2;DB;DP=618;set=Intersection	GT:AD:AF:DP	0/1:335,281:0.46:616
chr12	105433607	rs4964318	G	A	4373.77	.	AC=1;AF=0.500;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	0/1:230,213:0.48:443
chr12	105433702	rs7315784	A	T	1144.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:55,46:0.46:101
chr12	105434467	rs11112330	C	T	3155.77	.	AC=1;AF=0.500;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	0/1:230,160:0.41:390
chr12	105434533	rs10861316	C	A	2825.77	.	AC=1;AF=0.500;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	0/1:227,151:0.40:378
chr12	105440421	rs10861324	T	G	808.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:45,35:0.44:80
chr12	105445798	rs61938827	C	A	1376.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:50,58:0.54:108
chr12	105446092	rs140372840	AT	A	1905.73	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:67,83:0.55:150
chr12	105446552	rs56188643	T	C	3567.77	.	AC=1;AF=0.500;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	0/1:228,181:0.44:409
chr12	105446719	rs56118650	G	T	3639.77	.	AC=1;AF=0.500;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	0/1:202,178:0.47:380
chr12	105454605	rs10674036	G	GAAAA	326.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.886;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=3.299;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.20;ReadPosRankSum=0.139;SOR=2.179;set=HC	GT:AD:AF:DP	0/1:5,14:0.74:19
chr12	105455651	rs6539183	A	G	2168.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr12	105477951	rs11112362	C	T	2162.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr12	105478327	rs7303961	C	T	455.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr12	105504764	rs1196839	G	A	1602.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr12	105504787	rs1196838	G	A	946.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:35,40:0.53:75
chr12	105508241	rs61418036	ACAT	A	279.73	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:4,8:0.67:12
chr12	105509160	rs1196801	G	T	434.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr12	105514480	rs1196837	A	G	394.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:28,20:0.42:48
chr12	105514786	rs1196836	G	T	1351.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:43,61:0.59:104
chr12	105519873	rs35267264	G	A	1184.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:98,63:0.39:161
chr12	105527385	rs1211276	G	C	642.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr12	105534025	rs1196808	G	A	4460.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:1,161:0.99:162
chr12	105534603	rs151106726	TAATC	T	1829.73	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:34,47:0.58:81
chr12	105534709	.	A	C	6012.77	.	AC=1;AF=0.500;AN=2;DP=546;set=Intersection	GT:AD:AF:DP	0/1:252,279:0.53:531
chr12	105536430	rs5800652	C	CTA	1075.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.36;QD=43.03;SOR=5.058;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr12	105538270	rs370837338	CT	C	356.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.801;ClippingRankSum=0.000;DB;DP=212;ExcessHet=3.0103;FS=1.995;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=0.000;QD=2.19;ReadPosRankSum=-0.022;SOR=0.960;set=HC	GT:AD:AF:DP	0/1:100,63:0.39:163
chr12	105538417	rs148267591	AGTT	A	1771.73	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:45,47:0.51:92
chr12	105538478	.	A	AT	155.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.716;ClippingRankSum=0.000;DP=197;ExcessHet=3.0103;FS=1.566;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.84;ReadPosRankSum=0.249;SOR=0.865;set=HC	GT:AD:AF:DP	0/1:151,35:0.19:186
chr12	105538665	rs139265089	G	GT	1326.73	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:88,76:0.46:164
chr12	105538758	rs11112386	A	G	630.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:25,24:0.49:49
chr12	105540322	rs199922129	A	AT	1039.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.180;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.126;QD=6.66;ReadPosRankSum=1.908;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:78,78:0.50:156
chr12	105543326	rs1196802	T	G	432.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr12	105546172	rs1663564	G	A	11922.77	.	AC=2;AF=1.00;AN=2;DB;DP=453;set=Intersection	GT:AD:AF:DP	1/1:0,451:1.00:451
chr12	105568122	rs935241	G	A	8835.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr12	105568176	rs935240	G	A	10446.77	.	AC=2;AF=1.00;AN=2;DB;DP=412;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.73;SOR=0.703;set=HC	GT:AD:AF:DP	1/1:0,406:1.00:406
chr12	105568359	rs11112396	T	G	624.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:30,28:0.48:58
chr12	105568381	rs11112397	T	C	493.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:19,19:0.50:38
chr12	105570041	rs10861360	C	T	1052.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:32,45:0.58:77
chr12	105582245	rs1196852	A	G	11017.77	.	AC=2;AF=1.00;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	1/1:0,410:1.00:410
chr12	105591569	rs12303948	G	A	2578.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:147,119:0.45:266
chr12	105629865	rs1196785	C	G	400.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:19,20:0.51:39
chr12	106460938	rs3741883	G	C	4945.77	.	AC=1;AF=0.500;AN=2;DB;DP=442;set=Intersection	GT:AD:AF:DP	0/1:196,239:0.55:435
chr12	106461857	rs3741885	G	C	744.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:43,36:0.46:79
chr12	106464785	rs4964437	G	C	948.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:44,43:0.49:87
chr12	106466490	rs73193828	A	C	2131.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.353;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=10.806;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.11;ReadPosRankSum=1.162;SOR=1.427;set=HC	GT:AD:AF:DP	0/1:84,92:0.52:176
chr12	106480450	rs2251027	A	G	456.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:22,17:0.44:39
chr12	106500160	rs11338561	TA	T	454.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.321;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=2.202;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.36;ReadPosRankSum=2.485;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:133,60:0.31:193
chr12	106532072	rs1215597	C	A	3345.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr12	106704974	rs4964460	G	A	2366.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:138,116:0.46:254
chr12	106706035	rs142380836	ATT	A	1772.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.270;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=12.410;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=0.000;QD=16.57;ReadPosRankSum=1.535;SOR=1.511;set=HC	GT:AD:AF:DP	1/1:24,83:0.78:107
chr12	106708278	rs2253838	T	G	1646.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:96,79:0.45:175
chr12	106708354	rs138352358	TGAGAGAGA	T,TGA	261.73	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=51;set=Intersection	GT:AF:DP	0/1:0.47:30
chr12	106717224	rs12424952	C	A	853.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:43,35:0.45:78
chr12	106717490	rs200010594	TTTAAA	T	679.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.719;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.93;ReadPosRankSum=-0.970;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:36,21:0.37:57
chr12	106717517	rs71843294	TA	T	1365.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.261;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.96;ReadPosRankSum=-2.364;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:22,35:0.61:57
chr12	106717522	.	T	A	1374.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.862;ClippingRankSum=0.000;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.12;ReadPosRankSum=-2.324;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:22,35:0.61:57
chr12	106717525	rs72143923	TA	T	1365.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.272;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.96;ReadPosRankSum=-2.996;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:22,35:0.61:57
chr12	106723190	rs11112940	A	G	956.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:37,42:0.53:79
chr12	106751805	rs61943670	G	A	709.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:21,32:0.60:53
chr12	106763013	rs7134881	C	T	1989.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:116,93:0.44:209
chr12	106763268	rs7135054	A	G	2939.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:184,138:0.43:322
chr12	106773676	rs7310703	A	C	519.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:24,21:0.47:45
chr12	106820957	.	C	CT	1105.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.198;ClippingRankSum=0.000;DP=241;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.313;QD=4.98;ReadPosRankSum=1.749;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:131,91:0.41:222
chr12	106831283	rs11112993	G	A	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.148;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=3.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.20;ReadPosRankSum=1.068;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:5,4:0.44:9
chr12	106838340	rs10861607	T	C	4844.77	.	AC=1;AF=0.500;AN=2;DB;DP=557;set=Intersection	GT:AD:AF:DP	0/1:307,240:0.44:547
chr12	106840195	rs10654233	C	CAA	147.76	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.142;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.16;ReadPosRankSum=1.087;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:12,12:0.50:24
chr12	106852841	.	G	C	369.77	.	AC=1;AF=0.500;AN=2;DP=44;set=Intersection	GT:AD:AF:DP	0/1:28,16:0.36:44
chr12	106890059	rs721438	C	T	1985.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr12	106890135	rs2288270	A	G	673.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr12	106890151	rs2288269	G	A	293.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:9,11:0.55:20
chr12	106893863	rs7137638	G	T	5088.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr12	106893930	rs7137444	A	T	6904.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr12	106903321	rs13561	T	C	2582.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:140,133:0.49:273
chr12	106994965	rs7311507	T	C	1000.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:42,50:0.54:92
chr12	106995136	rs7295853	G	C	1002.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:54,54:0.50:108
chr12	107002558	rs55993073	CT	C	1777.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.453;ClippingRankSum=0.000;DB;DP=291;ExcessHet=3.0103;FS=5.056;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=0.887;QD=6.66;ReadPosRankSum=0.614;SOR=1.054;set=HC	GT:AD:AF:DP	0/1:120,147:0.55:267
chr12	107033047	rs10861641	A	G	2628.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:132,120:0.48:252
chr12	107078448	rs10467029	C	T	850.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:36,37:0.51:73
chr12	107078562	rs5800715	A	AAAG	3797.73	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:111,96:0.46:207
chr12	107080617	rs56287989	CTTT	C	2866.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.695;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=3.480;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.11;ReadPosRankSum=-0.095;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:70,80:0.53:150
chr12	107080638	rs55658229	TCC	T	3556.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.266;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=4.939;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.61;ReadPosRankSum=-0.050;SOR=0.443;set=HC	GT:AD:AF:DP	0/1:99,103:0.51:202
chr12	107083031	rs9804754	G	A	3988.77	.	AC=1;AF=0.500;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	0/1:186,192:0.51:378
chr12	107090201	rs10778502	T	C	2535.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:161,131:0.45:292
chr12	107126065	rs7307472	A	G	3682.77	.	AC=1;AF=0.500;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	0/1:199,167:0.46:366
chr12	107144328	rs12424114	A	G	1728.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.540;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=6.706;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.29;ReadPosRankSum=0.187;SOR=0.334;set=HC	GT:AD:AF:DP	0/1:87,81:0.48:168
chr12	107237614	.	G	GT	358.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.552;ClippingRankSum=0.000;DP=174;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.15;ReadPosRankSum=-0.240;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:125,42:0.25:167
chr12	107364873	rs10778520	C	T	2072.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:120,98:0.45:218
chr12	107395106	rs8192440	A	G	3365.77	.	AC=1;AF=0.500;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	0/1:239,178:0.43:417
chr12	107398862	.	TA	T	380.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.894;ClippingRankSum=0.000;DP=275;ExcessHet=3.0103;FS=3.099;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.818;QD=1.46;ReadPosRankSum=1.627;SOR=0.992;set=HC	GT:AD:AF:DP	0/1:190,70:0.27:260
chr12	107713511	rs961498	G	C	1774.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:116,92:0.44:208
chr12	107713696	rs111260184	G	A	3415.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:150,164:0.52:314
chr12	107713963	rs71442718	A	G	920.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:73,41:0.36:114
chr12	107714310	rs11383016	T	TC	1564.73	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:44,59:0.57:103
chr12	107714450	rs7358583	G	T	2997.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:152,146:0.49:298
chr12	108003911	rs4964599	T	C	8285.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr12	108013724	rs183023509	C	G	936.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:39,44:0.53:83
chr12	108035805	rs9919699	T	C	3380.77	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:161,162:0.50:323
chr12	108035903	rs9919712	T	C	4710.77	.	AC=1;AF=0.500;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	0/1:226,236:0.51:462
chr12	108045292	rs2241186	T	C	954.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.125;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=3.079;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.16;ReadPosRankSum=0.221;SOR=0.377;set=HC	GT:AD:AF:DP	0/1:52,42:0.45:94
chr12	108045336	rs2241185	T	C	2341.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:147,112:0.43:259
chr12	108045392	rs2241184	T	C	5486.77	.	AC=1;AF=0.500;AN=2;DB;DP=542;set=Intersection	GT:AD:AF:DP	0/1:276,257:0.48:533
chr12	108051406	rs12303478	G	A	3678.77	.	AC=1;AF=0.500;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	0/1:183,172:0.48:355
chr12	108086697	rs2287216	T	C	2215.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:93,102:0.52:195
chr12	108090518	rs2287214	A	G	81.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:3,4:0.57:7
chr12	108127965	rs17306603	A	G	753.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:57,34:0.37:91
chr12	108135042	rs191205892	T	A	914.73	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:70,55:0.44:125
chr12	108136172	rs2302734	A	G	3352.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:148,158:0.52:306
chr12	108140032	rs3803120	T	C	2511.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:114,119:0.51:233
chr12	108140266	.	G	GT	192.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.175;ClippingRankSum=0.000;DP=73;ExcessHet=3.0103;FS=9.768;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.71;ReadPosRankSum=1.397;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:34,18:0.35:52
chr12	108147982	rs4964617	C	T	309.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:9,13:0.59:22
chr12	108150758	rs1814335	C	A	525.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:33,25:0.43:58
chr12	108154199	rs2302733	A	G	7571.77	.	AC=1;AF=0.500;AN=2;DB;DP=811;set=Intersection	GT:AD:AF:DP	0/1:435,365:0.46:800
chr12	108169187	.	G	A	272.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.445;ClippingRankSum=0.000;DP=168;ExcessHet=3.0103;FS=2.719;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.68;ReadPosRankSum=-0.679;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:134,28:0.17:162
chr12	108600237	rs1106752	A	G	2504.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:105,115:0.52:220
chr12	108675724	rs12816282	A	G	4145.77	.	AC=1;AF=0.500;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	0/1:215,197:0.48:412
chr12	108686008	rs1057401	C	G	12196.77	.	AC=2;AF=1.00;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	1/1:0,425:1.00:425
chr12	108687449	rs59925321	GA	G	774.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.408;ClippingRankSum=0.000;DB;DP=311;ExcessHet=3.0103;FS=7.985;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=-1.431;QD=3.04;ReadPosRankSum=-0.245;SOR=1.128;set=HC	GT:AD:AF:DP	0/1:149,106:0.42:255
chr12	108687451	.	A	G	374.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-7.728;ClippingRankSum=0.000;DP=302;ExcessHet=3.0103;FS=9.305;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=-0.814;QD=1.42;ReadPosRankSum=0.616;SOR=1.166;set=HC	GT:AD:AF:DP	0/1:197,66:0.25:263
chr12	108913377	rs5800830	GT	G	69.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.759;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.52;ReadPosRankSum=2.050;SOR=1.002;set=HC	GT:AD:AF:DP	0/1:33,13:0.28:46
chr12	108917520	rs34982944	G	GA	988.90	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:11,56:0.84:67
chr12	108918146	rs2303633	C	T	2706.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr12	108918330	rs2303632	G	T	1067.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:37,50:0.57:87
chr12	108919390	rs7963063	T	C	2771.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:115,131:0.53:246
chr12	108923950	rs1549096	A	G	14302.77	.	AC=2;AF=1.00;AN=2;DB;DP=565;set=Intersection	GT:AD:AF:DP	1/1:2,554:1.00:556
chr12	108924904	rs2287549	C	T	3280.77	.	AC=1;AF=0.500;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	0/1:205,160:0.44:365
chr12	108929365	rs118063542	C	T	854.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:50,39:0.44:89
chr12	108931779	rs2287550	C	A	3647.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:168,171:0.50:339
chr12	108932053	rs2287551	C	T	1585.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr12	108932916	rs7133076	C	T	4945.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr12	108936428	rs11113982	T	C	262.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:18,13:0.42:31
chr12	108936516	rs888556	T	G	3996.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.958;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=42.52;ReadPosRankSum=-0.164;SOR=0.982;set=HC	GT:AD:AF:DP	1/1:2,92:0.98:94
chr12	108936519	rs888557	C	T	4045.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.768;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=42.59;ReadPosRankSum=-0.299;SOR=0.901;set=HC	GT:AD:AF:DP	1/1:2,93:0.98:95
chr12	108943028	rs2052423	G	A	3020.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr12	108954502	rs1160332	G	A	3728.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr12	108954823	rs1063936	C	T	25224.77	.	AC=2;AF=1.00;AN=2;DB;DP=924;set=Intersection	GT:AD:AF:DP	1/1:0,919:1.00:919
chr12	108956357	rs2287554	C	T	371.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:28,16:0.36:44
chr12	108956417	rs10778647	TT	GG	6075.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr12	108956433	rs2287555	C	T	6938.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr12	108956526	rs60547936	A	AG	10320.73	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr12	108956610	rs2287556	C	G	4363.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr12	108960906	rs10861945	G	T	1373.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr12	108961293	rs888546	C	T	2732.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr12	108961354	rs888547	T	C	3643.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr12	108961383	rs888548	A	G	4123.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr12	108985945	rs7975237	A	G	3197.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:163,153:0.48:316
chr12	108986031	rs74504010	C	T	1304.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:63,62:0.50:125
chr12	109017650	rs63748999	GGAGTGGTCTGTGCCTCCGTGGGCACTGGTT	G	10422.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.226;ClippingRankSum=0.000;DB;DP=976;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.68;MQRankSum=8.863;QD=15.11;ReadPosRankSum=-0.523;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:407,283:0.41:690
chr12	109025432	rs8179115	T	C	3315.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.58;SOR=3.976;set=HC	GT:AD:AF:DP	1/1:0,105:1.00:105
chr12	109095137	rs3741782	A	G	8119.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:1,296:1.00:297
chr12	109183144	rs60314156	C	CT	1707.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr12	109205189	rs11114060	C	T	1800.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr12	109217007	rs34849596	G	GT	4022.73	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr12	109221013	rs10861970	C	A	4829.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:2,182:0.99:184
chr12	109270506	rs7136681	A	G	6109.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr12	109293109	rs11420034	G	GA	7984.73	.	AC=2;AF=1.00;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	1/1:20,359:0.95:379
chr12	109293320	rs3918347	A	G	2790.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:1,90:0.99:91
chr12	109309424	rs4964773	T	C	5083.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:2,182:0.99:184
chr12	109330915	rs10861986	G	A	1823.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:91,82:0.47:173
chr12	109331162	rs3918305	C	T	3059.77	.	AC=1;AF=0.500;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	0/1:176,149:0.46:325
chr12	109338835	rs36131538	C	T	872.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:38,39:0.51:77
chr12	109339023	rs36191519	C	T	880.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:83,45:0.35:128
chr12	109354632	rs36181716	T	C	4155.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr12	109371381	rs149284306	C	A	2302.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:126,115:0.48:241
chr12	109371442	rs36182807	G	T	1042.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:41,47:0.53:88
chr12	109458559	rs138861157	A	AC,ACC	1308.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.363;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.94;MQRankSum=0.000;QD=22.18;ReadPosRankSum=0.487;SOR=3.729;set=HC	GT:AD:AF:DP	1/2:7,21,31:0.36,0.53:59
chr12	109490401	rs2304266	C	T	675.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:47,34:0.42:81
chr12	109490426	rs140371213	C	CCGGCGG	2299.73	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:46,56:0.55:102
chr12	109490601	rs2304267	C	T	1082.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:51,54:0.51:105
chr12	109510086	rs111762860	G	GT	413.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.339;ClippingRankSum=0.000;DB;DP=321;ExcessHet=3.0103;FS=7.356;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.39;ReadPosRankSum=0.949;SOR=1.092;set=HC	GT:AD:AF:DP	0/1:232,65:0.22:297
chr12	109511144	rs7967182	T	C	2645.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr12	109511256	rs7967322	T	C	9705.77	.	AC=2;AF=1.00;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	1/1:0,360:1.00:360
chr12	109530278	rs145676752	G	GCA	8667.73	.	AC=1;AF=0.500;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	0/1:64,285:0.82:349
chr12	109530382	.	T	C	8215.77	.	AC=1;AF=0.500;AN=2;DP=853;set=Intersection	GT:AD:AF:DP	0/1:427,415:0.49:842
chr12	109536559	rs3219211	A	C	760.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:26,32:0.55:58
chr12	109540613	rs3219235	G	GT	2147.73	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:90,106:0.54:196
chr12	109547568	.	C	CAAAAAA	471.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.285;ClippingRankSum=0.000;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.35;ReadPosRankSum=-0.924;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:112,29:0.21:141
chr12	109547586	rs2878959	A	T	2905.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.774;ClippingRankSum=0.000;DB;DP=238;ExcessHet=3.0103;FS=3.478;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.26;ReadPosRankSum=7.250;SOR=0.971;set=HC	GT:AD:AF:DP	0/1:103,134:0.57:237
chr12	109577735	rs2878960	C	T	6677.77	.	AC=1;AF=0.500;AN=2;DB;DP=678;set=Intersection	GT:AD:AF:DP	0/1:358,316:0.47:674
chr12	109577952	rs4766494	T	C	991.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:60,51:0.46:111
chr12	109605730	rs4766516	C	T	4220.77	.	AC=1;AF=0.500;AN=2;DB;DP=466;set=Intersection	GT:AD:AF:DP	0/1:252,212:0.46:464
chr12	109605898	rs34285	C	T	3507.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr12	109609528	rs12821387	T	C	3082.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:159,143:0.47:302
chr12	109617865	rs11065772	T	C	1718.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr12	109623516	rs2300455	G	A	6998.77	.	AC=1;AF=0.500;AN=2;DB;DP=610;set=Intersection	GT:AD:AF:DP	0/1:274,333:0.55:607
chr12	109625976	.	CTCCTTCCT	C,CTCCTTCCTTCCT	2199.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=217;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.10;QD=40.74;SOR=5.747;set=HC	GT:AD:AF:DP	1/2:0,33,21:0.61,0.39:54
chr12	109629457	rs7135947	C	T	3028.77	.	AC=1;AF=0.500;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	0/1:217,152:0.41:369
chr12	109635031	rs2268393	A	G	2053.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:90,92:0.51:182
chr12	109635076	rs2268392	T	C	922.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:46,44:0.49:90
chr12	109637188	rs7299171	G	C	4732.77	.	AC=1;AF=0.500;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	0/1:140,214:0.60:354
chr12	109644447	rs12818490	G	A	1154.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr12	109650546	rs2300454	T	C	895.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:47,42:0.47:89
chr12	109665242	rs60293430	G	A	4894.77	.	AC=1;AF=0.500;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	0/1:191,229:0.55:420
chr12	109670468	rs3742027	T	C	18926.77	.	AC=2;AF=1.00;AN=2;DB;DP=699;set=Intersection	GT:AD:AF:DP	1/1:0,695:1.00:695
chr12	109675029	rs2241220	T	C	13711.77	.	AC=2;AF=1.00;AN=2;DB;DP=511;set=Intersection	GT:AD:AF:DP	1/1:0,507:1.00:507
chr12	109679136	rs113178544	G	T	1821.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:90,82:0.48:172
chr12	109683575	rs10744772	A	G	4611.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr12	109683871	rs118115444	C	T	961.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:54,44:0.45:98
chr12	109685545	rs2284689	A	G	3547.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr12	109691991	rs2075259	A	G	19327.77	.	AC=2;AF=1.00;AN=2;DB;DP=707;set=Intersection	GT:AD:AF:DP	1/1:0,702:1.00:702
chr12	109692053	rs17848835	C	T	8513.77	.	AC=1;AF=0.500;AN=2;DB;DP=894;set=Intersection	GT:AD:AF:DP	0/1:458,424:0.48:882
chr12	109696838	rs2075260	G	A	23360.77	.	AC=2;AF=1.00;AN=2;DB;DP=891;set=Intersection	GT:AD:AF:DP	1/1:0,883:1.00:883
chr12	109697796	rs2075261	A	G	7356.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr12	109701959	rs35795929	CA	C	454.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.459;ClippingRankSum=0.000;DB;DP=333;ExcessHet=3.0103;FS=1.176;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=2.251;QD=1.49;ReadPosRankSum=-0.458;SOR=0.800;set=HC	GT:AD:AF:DP	0/1:225,81:0.26:306
chr12	109704177	rs2075262	G	A	6005.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:2,215:0.99:217
chr12	109717697	rs10774641	A	G	4877.77	.	AC=1;AF=0.500;AN=2;DB;DP=503;set=Intersection	GT:AD:AF:DP	0/1:270,225:0.45:495
chr12	109717820	rs75265740	G	A	3347.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:135,152:0.53:287
chr12	109719559	rs61741949	C	T	524.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:27,28:0.51:55
chr12	109723079	.	TGC	T	93.73	.	AC=1;AF=0.500;AN=2;DP=49;set=Intersection	GT:AD:AF:DP	0/1:34,6:0.15:40
chr12	109725601	rs66482033	G	T	297.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:12,15:0.56:27
chr12	109725688	rs7959782	G	A	826.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:47,41:0.47:88
chr12	109728112	.	C	T	3215.77	.	AC=1;AF=0.500;AN=2;DP=319;set=Intersection	GT:AD:AF:DP	0/1:166,151:0.48:317
chr12	109728175	rs11066130	G	A	1554.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:50,68:0.58:118
chr12	109831344	.	T	TCATCCAACCATTCATCCATCCATCCATC	2234	.	AC=1;AF=0.500;AN=2;BRF=0.45;FR=0.5000;HP=1;HapScore=2;MGOF=3;MMLQ=28;MQ=63.61;NF=2;NR=44;PP=2234;QD=48.6956521739;SC=GTCCATCCATTCATCCATCCA;SbPval=0.68;Source=Platypus;TC=117;TCF=6;TCR=111;TR=46;WE=109831364;WS=109831329;set=Platypus	GT:AD:AF:DP	1/0:71,46:0.39:117
chr12	109831348	.	C	CCAACCATT	858.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.770;ClippingRankSum=0.000;DP=213;ExcessHet=3.0103;FS=21.568;MLEAC=1;MLEAF=0.500;MQ=63.88;MQRankSum=8.125;QD=7.04;ReadPosRankSum=3.511;SOR=3.065;set=HC	GT:AD:AF:DP	0/1:93,29:0.24:122
chr12	109831356	.	C	CCATCCATCCATCCATCCATT	780.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.157;ClippingRankSum=0.000;DP=204;ExcessHet=3.0103;FS=16.477;MLEAC=1;MLEAF=0.500;MQ=63.39;MQRankSum=5.999;QD=6.10;ReadPosRankSum=4.975;SOR=2.703;set=HC	GT:AD:AF:DP	0/1:101,27:0.21:128
chr12	109835590	rs11611358	A	G	6710.77	.	AC=1;AF=0.500;AN=2;DB;DP=619;set=Intersection	GT:AD:AF:DP	0/1:292,317:0.52:609
chr12	109843594	rs9888353	G	A	737.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:36,31:0.46:67
chr12	109844432	rs11066505	A	G	766.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:31,34:0.52:65
chr12	109844702	rs12425103	C	T	988.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:42,43:0.51:85
chr12	109845778	rs75978659	C	CATT	7117.73	.	AC=1;AF=0.500;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	0/1:147,182:0.55:329
chr12	109847946	.	A	AT	645.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.056;ClippingRankSum=0.000;DP=75;ExcessHet=3.0103;FS=0.961;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=0.886;QD=10.09;ReadPosRankSum=0.367;SOR=0.572;set=HC	GT:AD:AF:DP	0/1:27,37:0.58:64
chr12	109848000	rs7967632	C	G	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.066;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.39;MQRankSum=-0.373;QD=1.35;ReadPosRankSum=1.382;SOR=0.332;set=HC	GT:AD:AF:DP	0/1:23,5:0.18:28
chr12	109848567	rs7315991	T	C	4438.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr12	109849535	rs2196612	A	G	2074.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.713;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=2.264;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.61;ReadPosRankSum=-0.318;SOR=1.031;set=HC	GT:AD:AF:DP	0/1:42,54:0.56:96
chr12	109849540	rs7316486	A	G	2063.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.508;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.975;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.04;ReadPosRankSum=0.595;SOR=0.867;set=HC	GT:AD:AF:DP	0/1:48,55:0.53:103
chr12	109849552	rs5800859	C	CCT	2566.73	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:65,67:0.51:132
chr12	109853306	rs4766598	A	G	1456.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:93,70:0.43:163
chr12	109853349	rs73194218	A	G	1722.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:124,91:0.42:215
chr12	109853462	rs4766471	G	A	670.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:35,31:0.47:66
chr12	109859032	rs5800861	G	GC	315.73	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:7,13:0.65:20
chr12	109863721	rs67083809	TTC	T	2533.73	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:94,86:0.48:180
chr12	109865121	rs34644066	CA	C	278.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.645;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.38;MQRankSum=1.167;QD=5.16;ReadPosRankSum=1.308;SOR=0.809;set=HC	GT:AD:AF:DP	0/1:24,30:0.56:54
chr12	109872909	rs34725387	C	T	1383.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:78,70:0.47:148
chr12	109874230	rs2075432	A	G	4634.77	.	AC=1;AF=0.500;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	0/1:165,210:0.56:375
chr12	109883254	rs3742020	T	C	491.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:31,22:0.42:53
chr12	109883374	rs3825393	T	C	6498.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:2,252:0.99:254
chr12	109883577	rs7969719	C	T	642.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:30,30:0.50:60
chr12	109927687	rs2241214	A	T	1631.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:78,72:0.48:150
chr12	109937534	rs7298565	G	A	2572.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:120,122:0.50:242
chr12	109955708	rs10850308	A	C	1501.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:83,74:0.47:157
chr12	109971481	rs12303137	C	G	5989.77	.	AC=1;AF=0.500;AN=2;DB;DP=548;set=Intersection	GT:AD:AF:DP	0/1:260,278:0.52:538
chr12	109994870	rs9593	A	T	1773.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:110,89:0.45:199
chr12	109995097	rs888192	A	G	600.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:24,24:0.50:48
chr12	109999048	rs12309115	C	T	3015.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:163,139:0.46:302
chr12	110002819	rs10850380	A	G	1129.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:30,42:0.58:72
chr12	110004960	rs874170	C	T	402.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:29,19:0.40:48
chr12	110006512	rs11836136	A	G	4411.77	.	AC=1;AF=0.500;AN=2;DB;DP=453;set=Intersection	GT:AD:AF:DP	0/1:223,220:0.50:443
chr12	110006724	.	G	GT	77.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.427;ClippingRankSum=0.000;DP=180;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=2.202;QD=0.58;ReadPosRankSum=1.133;SOR=0.522;set=HC	GT:AD:AF:DP	0/1:107,26:0.20:133
chr12	110011229	rs10774774	GC	TT	3970.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;JOINED;set=Intersection	GT:AD:AF:DP	0/1:139,108:0.44:247
chr12	110012467	rs3759387	G	T	82.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.612;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=4.472;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.91;ReadPosRankSum=-2.266;SOR=0.061;set=HC	GT:AD:AF:DP	0/1:9,5:0.36:14
chr12	110012510	rs66616264	C	G	198.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:17,11:0.39:28
chr12	110013879	rs7957619	G	A	6140.77	.	AC=1;AF=0.500;AN=2;DB;DP=654;set=Intersection	GT:AD:AF:DP	0/1:340,308:0.48:648
chr12	110014055	rs3752662	C	T	1712.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:79,77:0.49:156
chr12	110016947	rs7296044	T	A	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.005;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=1.623;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.82;ReadPosRankSum=0.047;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:20,9:0.31:29
chr12	110221631	rs10774894	G	C	4345.77	.	AC=1;AF=0.500;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	0/1:195,195:0.50:390
chr12	110231717	rs10850750	C	G	1892.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.493;ClippingRankSum=0.000;DB;DP=241;ExcessHet=3.0103;FS=43.800;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.05;ReadPosRankSum=-2.325;SOR=2.747;set=HC	GT:AD:AF:DP	0/1:139,96:0.41:235
chr12	110240838	rs3825394	T	G	2773.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:161,138:0.46:299
chr12	110293678	rs3782893	G	C	538.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:12,25:0.68:37
chr12	110296095	rs4766488	G	C	627.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:21,30:0.59:51
chr12	110418635	rs7960775	A	G	2249.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr12	110426653	.	CAA	C	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.026;ClippingRankSum=-0.000;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.23;ReadPosRankSum=0.344;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:10,6:0.38:16
chr12	110454085	.	CT	C	333.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.777;ClippingRankSum=0.000;DP=173;ExcessHet=3.0103;FS=1.571;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.97;ReadPosRankSum=1.754;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:117,52:0.31:169
chr12	110463769	.	C	CT	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.575;ClippingRankSum=0.000;DP=142;ExcessHet=3.0103;FS=9.783;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.000;QD=0.39;ReadPosRankSum=-0.363;SOR=2.434;set=HC	GT:AD:AF:DP	0/1:79,18:0.19:97
chr12	110489134	rs77981767	C	A	3549.77	.	AC=1;AF=0.500;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	0/1:168,169:0.50:337
chr12	110618235	rs16940805	A	G	835.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:67,40:0.37:107
chr12	110720351	.	CT	C	244.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.259;ClippingRankSum=0.000;DP=281;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.90;ReadPosRankSum=0.404;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:213,58:0.21:271
chr12	110729807	rs35235621	G	A	3087.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:159,152:0.49:311
chr12	110780107	rs56243033	G	A	2809.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:155,136:0.47:291
chr12	110820521	rs28713182	T	C	504.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:24,25:0.51:49
chr12	110834030	.	C	CA	275.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.916;ClippingRankSum=0.000;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.36;MQRankSum=2.699;QD=2.12;ReadPosRankSum=-1.039;SOR=0.617;set=HC	GT:AD:AF:DP	0/1:89,41:0.32:130
chr12	110873127	.	C	CT	360.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.365;ClippingRankSum=0.000;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-1.137;QD=4.94;ReadPosRankSum=-0.089;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:38,35:0.48:73
chr12	110874502	rs28615662	T	A	262.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.723;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.38;ReadPosRankSum=0.504;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:10,18:0.64:28
chr12	110874504	rs201277439	T	A	792.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.740;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.71;ReadPosRankSum=0.583;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:46,28:0.38:74
chr12	110874516	rs375877607	TAC	T	54.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.463;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.33;ReadPosRankSum=3.438;SOR=0.909;set=HC	GT:AD:AF:DP	0/1:33,8:0.20:41
chr12	110897558	rs11541440	G	A	5427.77	.	AC=1;AF=0.500;AN=2;DB;DP=535;set=Intersection	GT:AD:AF:DP	0/1:267,262:0.50:529
chr12	110905869	rs7958683	G	A	39021.77	.	AC=2;AF=1.00;AN=2;DB;DP=1451;set=Intersection	GT:AD:AF:DP	1/1:0,1434:1.00:1434
chr12	110930685	rs141732041	GA	TT	4485.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;JOINED;MQ=59.98;set=Intersection	GT:AD:AF:DP	0/1:124,118:0.49:242
chr12	110937445	.	C	CA	88.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.613;ClippingRankSum=0.000;DP=136;ExcessHet=3.0103;FS=3.088;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.81;ReadPosRankSum=0.221;SOR=0.292;set=HC	GT:AD:AF:DP	0/1:89,21:0.19:110
chr12	110939421	rs6606687	T	C	22527.77	.	AC=2;AF=1.00;AN=2;DB;DP=827;set=Intersection	GT:AD:AF:DP	1/1:0,818:1.00:818
chr12	110944299	rs61942603	G	C	1319.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:42,58:0.58:100
chr12	110950775	.	AT	A	127.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.087;ClippingRankSum=0.000;DP=115;ExcessHet=3.0103;FS=1.089;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=2.352;QD=1.49;ReadPosRankSum=-1.340;SOR=0.929;set=HC	GT:AD:AF:DP	0/1:62,24:0.28:86
chr12	110974890	rs10849900	T	C	5532.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr12	111290871	rs886132	G	C	1662.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:84,79:0.48:163
chr12	111296332	rs4766432	T	C	159.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:10,7:0.41:17
chr12	111342278	rs147402383	C	G	551.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:31,27:0.47:58
chr12	111351963	rs377450331	GAC	G	332.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.143;ClippingRankSum=0.000;DB;DP=501;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=6.357;QD=0.71;ReadPosRankSum=0.335;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:408,59:0.13:467
chr12	111651876	rs73197969	T	G	1312.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:24,52:0.68:76
chr12	111651949	rs3825398	G	A	1197.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:55,51:0.48:106
chr12	111651977	rs11338501	CT	C	916.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.086;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=0.793;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.949;QD=5.95;ReadPosRankSum=0.308;SOR=0.590;set=HC	GT:AD:AF:DP	0/1:56,98:0.64:154
chr12	111701486	rs56249976	GA	G	2081.73	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:176,143:0.45:319
chr12	111733292	rs73199852	G	A	2562.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:167,125:0.43:292
chr12	111742222	rs1362006	T	C	1328.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:54,65:0.55:119
chr12	111747809	rs201270698	C	CGTCT	2999.73	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:129,83:0.39:212
chr12	111748524	rs66783848	C	T	875.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:71,46:0.39:117
chr12	111758620	rs4766505	A	G	1640.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.553;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=1.295;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.17;ReadPosRankSum=-1.434;SOR=1.058;set=HC	GT:AD:AF:DP	0/1:29,45:0.61:74
chr12	111758629	rs150114230	G	C	1492.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.541;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=1.527;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.08;ReadPosRankSum=-2.173;SOR=1.220;set=HC	GT:AD:AF:DP	0/1:25,37:0.60:62
chr12	111785586	rs3803167	T	C	7135.77	.	AC=1;AF=0.500;AN=2;DB;DP=636;set=Intersection	GT:AD:AF:DP	0/1:297,330:0.53:627
chr12	111786082	rs6490073	G	C	17106.77	.	AC=2;AF=1.00;AN=2;DB;DP=632;set=Intersection	GT:AD:AF:DP	1/1:0,621:1.00:621
chr12	111799524	rs11576045	C	CTGT	975.73	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:26,25:0.49:51
chr12	111799681	rs874286	T	C	4456.77	.	AC=1;AF=0.500;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	0/1:199,205:0.51:404
chr12	111800826	rs139032867	TGCCACCCCC	T	3163.73	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:95,83:0.47:178
chr12	111884608	rs3184504	T	C	6425.77	.	AC=1;AF=0.500;AN=2;DB;DP=645;set=Intersection	GT:AD:AF:DP	0/1:332,306:0.48:638
chr12	111947310	.	T	A	418.77	.	AC=1;AF=0.500;AN=2;DP=50;set=Intersection	GT:AD:AF:DP	0/1:28,21:0.43:49
chr12	112036753	rs10560189	GGCT	G	6274.73	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:7,235:0.97:242
chr12	112036776	.	CTGCTGT	C	1241	.	AC=1;AF=0.500;AN=2;BRF=0.51;FR=0.5000;HP=1;HapScore=2;MGOF=40;MMLQ=28;MQ=60.17;NF=28;NR=63;PP=1241;QD=13.7252747253;SC=GCTGCTGCTGCTGCTGTTGCT;SbPval=0.79;Source=Platypus;TC=135;TCF=50;TCR=85;TR=91;WE=112036792;WS=112036766;set=Platypus	GT:AD:AF:DP	1/0:44,91:0.67:135
chr12	112036797	rs4098854	C	T	7245.77	.	AC=1;AF=0.500;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	0/1:32,204:0.86:236
chr12	112036929	rs695872	G	A	3528.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr12	112037000	rs695871	G	C	2868.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr12	112119387	rs368877992	CA	C	103.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.394;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=17.573;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.92;ReadPosRankSum=-1.594;SOR=0.022;set=HC	GT:AD:AF:DP	0/1:34,20:0.37:54
chr12	112148301	rs34767337	AT	A	462.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.245;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=2.024;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.538;QD=4.49;ReadPosRankSum=0.245;SOR=0.439;set=HC	GT:AD:AF:DP	0/1:54,49:0.48:103
chr12	112193508	.	G	A	2324.77	.	AC=1;AF=0.500;AN=2;DP=213;set=Intersection	GT:AD:AF:DP	0/1:103,109:0.51:212
chr12	112306512	.	CT	C	243.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.396;ClippingRankSum=0.000;DP=187;ExcessHet=3.0103;FS=0.804;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.35;ReadPosRankSum=-1.028;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:126,54:0.30:180
chr12	112308111	rs199721843	A	C	4867.77	.	AC=1;AF=0.500;AN=2;DB;DP=514;set=Intersection	GT:AD:AF:DP	0/1:266,241:0.48:507
chr12	112579878	.	G	GT	56.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.129;ClippingRankSum=0.000;DP=253;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.24;ReadPosRankSum=-1.008;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:205,35:0.15:240
chr12	112610714	rs11066188	G	A	1242.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:73,61:0.46:134
chr12	112638688	rs35054697	CGT	C	1298.73	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:51,67:0.57:118
chr12	112647772	rs11611847	T	C	897.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:36,36:0.50:72
chr12	113269736	rs11829717	A	G	3564.77	.	AC=1;AF=0.500;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	0/1:175,160:0.48:335
chr12	113313470	rs2891411	C	T	5641.77	.	AC=1;AF=0.500;AN=2;DB;DP=532;set=Intersection	GT:AD:AF:DP	0/1:256,266:0.51:522
chr12	113319471	rs886476	G	A	389.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:29,18:0.38:47
chr12	113319600	rs2240194	C	T	3598.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:172,164:0.49:336
chr12	113319778	rs10850088	G	A	6771.77	.	AC=1;AF=0.500;AN=2;DB;DP=629;set=Intersection	GT:AD:AF:DP	0/1:292,323:0.53:615
chr12	113325460	rs7979186	T	C	720.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:38,28:0.42:66
chr12	113325629	rs4141253	T	C	6117.77	.	AC=1;AF=0.500;AN=2;DB;DP=604;set=Intersection	GT:AD:AF:DP	0/1:303,298:0.50:601
chr12	113328981	rs3741982	G	A	780.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:21,31:0.60:52
chr12	113348870	rs1131454	G	A	4592.77	.	AC=1;AF=0.500;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	0/1:202,219:0.52:421
chr12	113357193	rs10774671	G	A	5832.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr12	113357209	rs1131476	G	A	6600.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:1,244:1.00:245
chr12	113357237	rs1051042	G	C	8819.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	1/1:2,337:0.99:339
chr12	113357442	rs2660	G	A	6101.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr12	113369644	rs7968145	C	T	3463.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;MQ=60.33;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr12	113369715	rs11352835	TA	T	7148.73	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr12	113369759	rs7967461	G	C	3624.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr12	113376320	rs3815178	C	T	2047.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr12	113376331	rs1859331	C	A	2460.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr12	113376388	rs1859330	G	A	3408.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr12	113376452	rs1859329	C	T	4290.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr12	113376543	rs3038120	C	CCAAAGGG	8325.73	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr12	113385918	rs7961861	C	T	8985.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:0,330:1.00:330
chr12	113386624	rs7965570	C	T	8092.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr12	113386779	rs2285933	C	G	23875.77	.	AC=2;AF=1.00;AN=2;DB;DP=904;set=Intersection	GT:AD:AF:DP	1/1:4,885:1.00:889
chr12	113386950	rs2285932	T	C	9964.77	.	AC=2;AF=1.00;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	1/1:0,369:1.00:369
chr12	113387034	rs3214199	A	AG	4978.73	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:3,165:0.98:168
chr12	113403684	rs2240188	C	T	11126.77	.	AC=2;AF=1.00;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	1/1:0,411:1.00:411
chr12	113405181	rs1557866	A	C	5999.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr12	113416653	rs2384075	G	A	1839.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr12	113424893	rs2072138	C	G	8257.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:2,320:0.99:322
chr12	113425154	rs1293767	C	G	3019.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr12	113433150	rs45565242	C	T	5518.77	.	AC=1;AF=0.500;AN=2;DB;DP=534;set=Intersection	GT:AD:AF:DP	0/1:262,260:0.50:522
chr12	113435293	rs1293756	C	A	10159.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:2,382:0.99:384
chr12	113435450	rs1293755	A	T	9594.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	1/1:0,348:1.00:348
chr12	113440921	rs2072137	T	C	12301.77	.	AC=2;AF=1.00;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	1/1:2,448:1.00:450
chr12	113444418	rs929291	T	C	9566.77	.	AC=2;AF=1.00;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	1/1:0,351:1.00:351
chr12	113448288	rs15895	A	G	9280.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	1/1:2,340:0.99:342
chr12	113496313	rs1732785	C	T	2086.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:140,114:0.45:254
chr12	113515924	rs71445596	CA	C	824.73	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:32,27:0.46:59
chr12	113530845	rs3217697	C	CAG	5864.73	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr12	113530899	rs1628639	A	G	6059.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr12	113531295	rs1625170	T	C	1862.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.76;SOR=5.084;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr12	113531305	rs1674095	A	T	2276.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.25;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr12	113532051	rs71086142	C	CT	925.73	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:32,37:0.54:69
chr12	113533050	rs2243397	C	T	44198.77	.	AC=2;AF=1.00;AN=2;DB;DP=1693;set=Intersection	GT:AD:AF:DP	1/1:0,1672:1.00:1672
chr12	113533124	rs2243396	C	T	39897.77	.	AC=2;AF=1.00;AN=2;DB;DP=1489;set=Intersection	GT:AD:AF:DP	1/1:1,1476:1.00:1477
chr12	113539822	rs1674101	A	G	7588.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr12	113541940	rs1613480	C	T	6890.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:1,251:1.00:252
chr12	113541999	rs148186900	C	T	5548.77	.	AC=1;AF=0.500;AN=2;DB;DP=474;set=Intersection	GT:AD:AF:DP	0/1:209,256:0.55:465
chr12	113544874	rs2468355	C	T	16795.77	.	AC=2;AF=1.00;AN=2;DB;DP=644;set=Intersection	GT:AD:AF:DP	1/1:0,628:1.00:628
chr12	113545393	rs736285	A	G	6302.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr12	113553408	rs1284878	C	T	2038.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr12	113553481	rs1284879	C	T	5127.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr12	113559531	.	AT	A	203.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.846;ClippingRankSum=0.000;DP=189;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=2.418;QD=1.58;ReadPosRankSum=-1.745;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:95,34:0.26:129
chr12	113566050	rs60280118	GAC	G	1360.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.079;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=2.433;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=0.543;QD=24.30;ReadPosRankSum=-1.865;SOR=0.351;set=HC	GT:AD:AF:DP	1/1:5,51:0.91:56
chr12	113607502	rs2384207	T	C	935.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:38,38:0.50:76
chr12	113612574	rs12811662	G	A	5526.77	.	AC=1;AF=0.500;AN=2;DB;DP=542;set=Intersection	GT:AD:AF:DP	0/1:260,274:0.51:534
chr12	113640906	rs34508212	C	G	458.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:29,23:0.44:52
chr12	113715251	rs7955036	T	G	3552.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:105,152:0.59:257
chr12	113724945	rs2241544	A	G	2640.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:161,129:0.44:290
chr12	113740442	rs7953252	A	G	5418.77	.	AC=1;AF=0.500;AN=2;DB;DP=648;set=Intersection	GT:AD:AF:DP	0/1:374,269:0.42:643
chr12	113740467	rs7966103	G	A	6441.77	.	AC=1;AF=0.500;AN=2;DB;DP=748;set=Intersection	GT:AD:AF:DP	0/1:409,331:0.45:740
chr12	113756706	rs2288364	C	G	1291.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:33,47:0.59:80
chr12	113796566	rs7965471	A	C	775.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:46,39:0.46:85
chr12	113825679	rs12425042	C	T	4004.77	.	AC=1;AF=0.500;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	0/1:229,195:0.46:424
chr12	113826442	rs78927955	C	G	5388.77	.	AC=1;AF=0.500;AN=2;DB;DP=633;set=Intersection	GT:AD:AF:DP	0/1:351,279:0.44:630
chr12	113836715	rs73194896	C	T	1862.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.950;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=5.540;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.63;ReadPosRankSum=0.220;SOR=1.300;set=HC	GT:AD:AF:DP	0/1:51,49:0.49:100
chr12	113836721	rs73194898	C	T	1833.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.338;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=5.475;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.52;ReadPosRankSum=0.248;SOR=1.261;set=HC	GT:AD:AF:DP	0/1:51,48:0.48:99
chr12	113874594	rs143959006	G	A	2474.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:135,113:0.46:248
chr12	114261053	rs11066773	G	A	7174.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr12	114261237	rs2059598	A	C	2859.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr12	114261286	rs930004	T	G	1373.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr12	114296745	rs10744803	C	T	1970.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:105,95:0.47:200
chr12	114356357	rs10774721	T	C	625.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:24,29:0.55:53
chr12	114362483	rs3782456	C	T	4457.77	.	AC=1;AF=0.500;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	0/1:207,207:0.50:414
chr12	114362621	rs1458713	A	G	16368.77	.	AC=2;AF=1.00;AN=2;DB;DP=620;set=Intersection	GT:AD:AF:DP	1/1:0,610:1.00:610
chr12	114362632	rs3782458	A	G	5825.77	.	AC=1;AF=0.500;AN=2;DB;DP=575;set=Intersection	GT:AD:AF:DP	0/1:276,289:0.51:565
chr12	114362699	rs10774723	G	T	2737.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:108,122:0.53:230
chr12	114377885	rs2290790	G	C	2678.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:104,130:0.56:234
chr12	114377899	rs7299217	G	C	6710.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr12	114379991	rs2290791	T	C	1745.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:77,80:0.51:157
chr12	114383559	rs898081	A	G	722.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:36,29:0.45:65
chr12	114384426	rs11066842	G	A	433.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:20,20:0.50:40
chr12	114392971	rs71443069	C	CGGT	2807.73	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:105,77:0.42:182
chr12	114393028	rs1037747	C	G	1326.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:108,72:0.40:180
chr12	114395571	rs2290786	C	T	815.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:35,34:0.49:69
chr12	114793240	rs883079	C	T	4319.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr12	114832510	rs2236017	C	A	4371.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:1,151:0.99:152
chr12	114837219	.	T	TA	285.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.196;ClippingRankSum=0.000;DP=203;ExcessHet=3.0103;FS=12.662;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=0.000;QD=1.53;ReadPosRankSum=1.226;SOR=1.908;set=HC	GT:AD:AF:DP	0/1:139,48:0.26:187
chr12	114839537	.	C	T	3169.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.971;ClippingRankSum=0.000;DP=382;ExcessHet=3.0103;FS=5.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.71;ReadPosRankSum=0.353;SOR=0.476;set=HC	GT:AD:AF:DP	0/1:202,162:0.45:364
chr12	115110241	rs55865934	GT	G	380.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.214;ClippingRankSum=-0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.37;MQRankSum=-0.000;QD=25.38;ReadPosRankSum=1.200;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:3,12:0.80:15
chr12	115110252	rs1532691	T	G	162.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.027;ClippingRankSum=-0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.60;MQRankSum=-0.000;QD=12.52;ReadPosRankSum=2.522;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:5,8:0.62:13
chr12	115112444	rs62640916	C	A	3267.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:152,152:0.50:304
chr12	115118997	rs515746	G	A	1227.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:66,56:0.46:122
chr12	115802115	.	G	GT	373.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.992;ClippingRankSum=0.000;DP=405;ExcessHet=3.0103;FS=1.136;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=2.012;QD=1.10;ReadPosRankSum=0.623;SOR=0.585;set=HC	GT:AD:AF:DP	0/1:273,66:0.19:339
chr12	116412921	rs1992068	AT	TC	6280.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr12	116586433	.	TATAC	T	60.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.292;ClippingRankSum=0.000;DP=23;ExcessHet=3.0103;FS=2.066;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.64;ReadPosRankSum=-0.224;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:18,5:0.22:23
chr12	116586435	rs34380284	TAC	T	174.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.465;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.94;ReadPosRankSum=1.052;SOR=0.409;set=HC	GT:AD:AF:DP	0/1:11,11:0.50:22
chr12	116586437	.	C	T	41.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.117;ClippingRankSum=0.000;DP=23;ExcessHet=3.0103;FS=2.105;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.90;ReadPosRankSum=-0.886;SOR=1.536;set=HC	GT:AD:AF:DP	0/1:16,6:0.27:22
chr12	116714113	.	T	TTGTG	202.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.319;ClippingRankSum=-0.000;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=25.34;ReadPosRankSum=0.792;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:2,6:0.75:8
chr12	116866112	rs202127912	CCA	C	366.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.712;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=10.719;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=0.000;QD=5.56;ReadPosRankSum=0.747;SOR=0.098;set=HC	GT:AD:AF:DP	0/1:43,23:0.35:66
chr12	116866113	rs370202370	CA	C	475.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.953;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=0.000;QD=7.32;ReadPosRankSum=0.107;SOR=0.640;set=HC	GT:AD:AF:DP	0/1:39,26:0.40:65
chr12	116866114	rs11068023	A	C	104.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.265;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=7.205;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=0.000;QD=1.59;ReadPosRankSum=-0.629;SOR=2.584;set=HC	GT:AD:AF:DP	0/1:53,13:0.20:66
chr12	117013730	rs7303998	G	C	10242.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	1/1:0,374:1.00:374
chr12	117186316	rs1532395	A	G	1940.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr12	117191693	rs4767444	G	A	2582.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:108,110:0.50:218
chr12	117217141	rs4767452	T	C	7319.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr12	117286981	rs4767461	C	T	3630.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:1,129:0.99:130
chr12	117289613	rs903775	G	C	5150.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr12	117290601	rs903772	T	C	4907.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr12	117349014	rs11068230	C	G	1488.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr12	117383320	rs4076700	G	A	4008.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr12	117402755	rs6490101	T	C	262.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr12	117423264	rs7131746	G	A	3295.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr12	117465857	rs4529958	T	C	8034.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:2,299:0.99:301
chr12	117486478	rs2291911	C	T	6694.77	.	AC=1;AF=0.500;AN=2;DB;DP=749;set=Intersection	GT:AD:AF:DP	0/1:413,323:0.44:736
chr12	117486642	rs2291910	T	A	8643.77	.	AC=1;AF=0.500;AN=2;DB;DP=800;set=Intersection	GT:AD:AF:DP	0/1:382,400:0.51:782
chr12	117494543	rs2173654	A	G	215.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:33,14:0.30:47
chr12	117593216	rs4767506	C	A	578.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:19,25:0.57:44
chr12	117593387	rs79478437	G	A	3219.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.589;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=1.957;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.00;ReadPosRankSum=1.988;SOR=0.632;set=HC	GT:AD:AF:DP	0/1:79,82:0.51:161
chr12	117593391	rs4767507	A	G	3207.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.113;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=2.722;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.44;ReadPosRankSum=1.733;SOR=0.594;set=HC	GT:AD:AF:DP	0/1:81,84:0.51:165
chr12	117595930	rs2279765	G	A	1155.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:37,50:0.57:87
chr12	117595978	rs2279766	A	C	429.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:18,19:0.51:37
chr12	117603161	rs2270791	T	C	167.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:4,7:0.64:11
chr12	117603561	rs4767511	G	A	488.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:20,21:0.51:41
chr12	117611934	rs57632063	C	T	297.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:26,14:0.35:40
chr12	117612357	rs3817015	T	C	934.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:32,37:0.54:69
chr12	117646196	.	CGT	C	65.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.086;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=0.081;QD=2.86;ReadPosRankSum=0.189;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:16,7:0.30:23
chr12	117660467	rs816363	C	G	1130.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:59,50:0.46:109
chr12	117681353	rs34385734	A	ACCAT	754.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.93;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr12	117691727	rs2682822	T	A	376.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:37,18:0.33:55
chr12	117696164	rs1093329	G	A	2005.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:138,101:0.42:239
chr12	117701714	rs2293054	A	G	12645.77	.	AC=2;AF=1.00;AN=2;DB;DP=499;set=Intersection	GT:AD:AF:DP	1/1:0,487:1.00:487
chr12	117705774	rs3741480	C	T	758.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr12	117715724	rs3215291	AC	A	2464.73	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:120,102:0.46:222
chr12	117718473	rs11282297	G	GGGTAAAA	8831.73	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:3,318:0.99:321
chr12	117718686	rs2293051	G	C	3164.77	.	AC=1;AF=0.500;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	0/1:199,161:0.45:360
chr12	117724225	rs9658354	A	T	257.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:20,12:0.38:32
chr12	117768105	rs111326073	G	GCA,GCACA	4222.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=151;set=Intersection	GT:AF:DP	1/2:0.10,0.81:125
chr12	117905636	rs36058871	T	TA	1059.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.205;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=1.427;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.97;ReadPosRankSum=1.594;SOR=0.871;set=HC	GT:AD:AF:DP	0/1:76,76:0.50:152
chr12	117905716	rs111919379	A	AGGGTTTCTG	1204.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.630;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=10.947;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.51;ReadPosRankSum=1.044;SOR=2.494;set=HC	GT:AD:AF:DP	0/1:24,32:0.57:56
chr12	117905724	.	G	GTTT	916.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.579;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;FS=3.536;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.19;ReadPosRankSum=0.198;SOR=1.483;set=HC	GT:AD:AF:DP	0/1:17,18:0.51:35
chr12	117965131	rs368841425	GAC	G	70.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.257;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.63;MQRankSum=0.535;QD=1.81;ReadPosRankSum=-1.578;SOR=0.311;set=HC	GT:AD:AF:DP	0/1:32,7:0.18:39
chr12	117996471	rs73405365	G	A	2012.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:73,86:0.54:159
chr12	118017201	rs4767569	C	T	1801.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr12	118020045	rs12369419	C	G	2592.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:111,125:0.53:236
chr12	118020115	rs11068551	G	A	5465.77	.	AC=1;AF=0.500;AN=2;DB;DP=537;set=Intersection	GT:AD:AF:DP	0/1:264,266:0.50:530
chr12	118199286	rs617641	C	G	2653.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:129,127:0.50:256
chr12	118406110	rs10651702	A	AG	147.82	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.56;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr12	118406112	rs7309205	A	G	156.85	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.14;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr12	118455480	.	A	AT	57.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.429;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.80;ReadPosRankSum=-0.394;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:23,9:0.28:32
chr12	118455759	rs2393374	T	G	23046.77	.	AC=2;AF=1.00;AN=2;DB;DP=871;set=Intersection	GT:AD:AF:DP	1/1:0,866:1.00:866
chr12	118456825	rs5745811	A	G	806.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:49,38:0.44:87
chr12	118460186	rs5745824	C	T	4387.77	.	AC=1;AF=0.500;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	0/1:152,203:0.57:355
chr12	118464688	rs5745870	A	G	1413.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:54,62:0.53:116
chr12	118465820	rs5745873	T	C	2960.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:166,139:0.46:305
chr12	118467369	rs4766894	T	A	689.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:32,29:0.48:61
chr12	118467553	rs4767654	A	G	7960.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:1,306:1.00:307
chr12	118467645	rs5745879	C	T	1428.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;MQ=60.06;set=Intersection	GT:AD:AF:DP	0/1:101,70:0.41:171
chr12	118480874	rs7312586	G	A	2605.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:84,117:0.58:201
chr12	118506327	rs72125532	TTCCTCC	T	5507.73	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:123,147:0.54:270
chr12	118508796	rs7135008	A	G	3113.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:161,154:0.49:315
chr12	118509086	rs7135400	A	T	1342.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:47,51:0.52:98
chr12	118509148	rs7308222	C	T	5453.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.071;ClippingRankSum=0.000;DB;DP=281;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.62;ReadPosRankSum=0.125;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:137,141:0.51:278
chr12	118509157	rs7296643	T	C	5773.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.928;ClippingRankSum=0.000;DB;DP=331;ExcessHet=3.0103;FS=1.412;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.60;ReadPosRankSum=0.855;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:168,160:0.49:328
chr12	118509191	rs7307331	G	A	5953.77	.	AC=1;AF=0.500;AN=2;DB;DP=551;set=Intersection	GT:AD:AF:DP	0/1:269,277:0.51:546
chr12	118519822	.	TAA	T	57.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.076;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.62;ReadPosRankSum=0.777;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:16,6:0.27:22
chr12	118520170	rs7488309	G	A	1857.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:95,87:0.48:182
chr12	118520240	rs6490164	G	A	787.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:19,30:0.61:49
chr12	118541188	rs35800761	G	C	681.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:21,25:0.54:46
chr12	118589069	rs2249624	G	A	2788.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr12	118589092	rs140297022	GCGCACA	GCA,G	518.84	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=43;set=Intersection	GT:AF:DP	0/1:0.84:31
chr12	118619415	rs77139493	G	A	6333.77	.	AC=1;AF=0.500;AN=2;DB;DP=638;set=Intersection	GT:AD:AF:DP	0/1:317,309:0.49:626
chr12	118650917	rs353886	C	T	1128.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr12	118673483	rs5801274	G	GA	1933.73	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:40,110:0.73:150
chr12	118681158	rs708862	T	A	2113.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr12	118682751	rs428073	C	T	7515.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:2,296:0.99:298
chr12	118828755	rs492939	G	A	1403.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr12	119563084	rs7296134	C	G	6900.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr12	119568691	rs4298970	A	G	9023.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr12	119588962	rs2723880	G	A	13433.77	.	AC=2;AF=1.00;AN=2;DB;DP=506;set=Intersection	GT:AD:AF:DP	1/1:0,500:1.00:500
chr12	119591176	rs34002484	A	AC	2041.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr12	119866533	rs1064319	A	G	4124.77	.	AC=1;AF=0.500;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	0/1:225,199:0.47:424
chr12	119871387	rs1716471	A	G	6174.77	.	AC=1;AF=0.500;AN=2;DB;DP=676;set=Intersection	GT:AD:AF:DP	0/1:354,318:0.47:672
chr12	119871493	rs1716470	G	A	2254.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:129,97:0.43:226
chr12	119871533	rs1727388	T	C	1162.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:57,45:0.44:102
chr12	119937983	rs482802	A	C	867.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:70,40:0.36:110
chr12	119958068	rs573590	T	C	1339.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:51,63:0.55:114
chr12	120067561	rs2301653	T	C	1269.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:68,61:0.47:129
chr12	120067727	rs2301654	C	T	4313.77	.	AC=1;AF=0.500;AN=2;DB;DP=490;set=Intersection	GT:AD:AF:DP	0/1:272,216:0.44:488
chr12	120067864	rs2893805	G	A	2284.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:118,101:0.46:219
chr12	120078577	rs2301655	T	C	5974.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr12	120078664	rs111558498	A	AAG	164.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.438;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=63.51;MQRankSum=0.000;QD=6.10;ReadPosRankSum=1.586;SOR=0.963;set=HC	GT:AD:AF:DP	0/1:12,15:0.56:27
chr12	120126074	rs10669112	A	AAGG	6136.73	.	AC=1;AF=0.500;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	0/1:141,158:0.53:299
chr12	120146164	rs79581232	G	A	2746.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:132,133:0.50:265
chr12	120146292	rs73412189	T	A	353.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.364;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=6.488;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.72;ReadPosRankSum=-1.524;SOR=0.132;set=HC	GT:AD:AF:DP	0/1:17,16:0.48:33
chr12	120148326	rs78839595	G	A	1436.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:40,57:0.59:97
chr12	120148363	rs35490437	C	T	1856.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:82,83:0.50:165
chr12	120150904	rs2285594	T	C	264.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:7,10:0.59:17
chr12	120151493	rs7311975	T	C	2555.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:129,125:0.49:254
chr12	120156001	rs77841771	C	T	1536.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:126,78:0.38:204
chr12	120158203	rs7299963	C	T	7012.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr12	120171995	rs278109	T	C	13518.77	.	AC=2;AF=1.00;AN=2;DB;DP=499;set=Intersection	GT:AD:AF:DP	1/1:0,488:1.00:488
chr12	120189879	rs904655	A	G	2408.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.80;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr12	120189888	rs904654	T	C	2620.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.27;SOR=1.647;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr12	120220282	rs440299	A	G	1434.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr12	120220589	rs385959	C	T	1404.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr12	120260872	.	C	CTT	447.73	.	AC=1;AF=0.500;AN=2;DP=87;set=Intersection	GT:AD:AF:DP	0/1:37,26:0.41:63
chr12	120263003	rs55707601	G	C	4370.77	.	AC=1;AF=0.500;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	0/1:192,202:0.51:394
chr12	120270528	rs4767849	T	C	2109.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:100,93:0.48:193
chr12	120270638	rs17442937	G	A	6022.77	.	AC=1;AF=0.500;AN=2;DB;DP=612;set=Intersection	GT:AD:AF:DP	0/1:309,290:0.48:599
chr12	120295225	rs7304029	G	A	2582.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:153,119:0.44:272
chr12	120306805	rs17588941	G	A	824.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:28,39:0.58:67
chr12	120567406	rs2240312	C	A	1563.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:42,67:0.61:109
chr12	120575549	rs3864938	A	C	17828.77	.	AC=2;AF=1.00;AN=2;DB;DP=655;set=Intersection	GT:AD:AF:DP	1/1:0,640:1.00:640
chr12	120582709	rs200082489	G	C	6700.77	.	AC=1;AF=0.500;AN=2;DB;DP=674;set=Intersection	GT:AD:AF:DP	0/1:343,307:0.47:650
chr12	120588852	rs4503602	A	G	6021.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr12	120589160	rs2286046	A	G	4279.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr12	120591251	rs10735071	C	T	15416.77	.	AC=2;AF=1.00;AN=2;DB;DP=590;set=Intersection	GT:AD:AF:DP	1/1:0,581:1.00:581
chr12	120606163	rs6490286	T	C	5173.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr12	120628027	rs34357352	C	CA	262.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.135;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=4.896;MLEAC=1;MLEAF=0.500;MQ=60.36;MQRankSum=2.948;QD=2.15;ReadPosRankSum=0.008;SOR=1.332;set=HC	GT:AD:AF:DP	0/1:84,38:0.31:122
chr12	120637199	rs1045110	G	A	4898.77	.	AC=1;AF=0.500;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	0/1:217,221:0.50:438
chr12	120661977	rs4767884	T	C	3844.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr12	120720038	rs7960743	T	C	7699.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr12	120741313	.	G	GA	118.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.906;ClippingRankSum=0.000;DP=256;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=5.860;QD=0.49;ReadPosRankSum=1.672;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:204,40:0.16:244
chr12	120750239	rs2261612	A	G	1415.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:88,73:0.45:161
chr12	120783527	rs1076205	G	A	1207.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:60,58:0.49:118
chr12	120783561	rs1076206	T	C	783.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:42,37:0.47:79
chr12	120791042	rs1007469	G	A	630.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:28,31:0.53:59
chr12	120794653	rs1179441	T	C	2692.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:96,105:0.52:201
chr12	120796703	rs1179445	T	A	1560.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:64,64:0.50:128
chr12	120800823	rs757123	A	G	4052.77	.	AC=1;AF=0.500;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	0/1:203,203:0.50:406
chr12	120801064	rs34243955	GC	G	238.73	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:7,13:0.65:20
chr12	120806129	rs111293994	C	CT	2146.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.723;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=1.367;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=1.270;QD=16.90;ReadPosRankSum=1.388;SOR=0.400;set=HC	GT:AD:AF:DP	0/1:56,71:0.56:127
chr12	120882835	rs3858722	TAC	T	1025.73	.	AC=1;AF=0.500;AN=2;DB;DP=63;MQ=60.17;set=Intersection	GT:AD:AF:DP	0/1:28,31:0.53:59
chr12	120884328	rs2235217	C	T	5491.77	.	AC=1;AF=0.500;AN=2;DB;DP=536;set=Intersection	GT:AD:AF:DP	0/1:268,261:0.49:529
chr12	120897652	rs28390349	T	C	2938.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr12	120907271	rs11548262	G	T	5527.77	.	AC=1;AF=0.500;AN=2;DB;DP=508;set=Intersection	GT:AD:AF:DP	0/1:246,256:0.51:502
chr12	120934407	rs1563333	C	T	7122.77	.	AC=1;AF=0.500;AN=2;DB;DP=681;set=Intersection	GT:AD:AF:DP	0/1:336,336:0.50:672
chr12	120941927	rs7136951	C	T	498.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:20,20:0.50:40
chr12	120942911	rs4766966	G	C	960.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:26,37:0.59:63
chr12	120947788	rs4766968	G	C	3253.77	.	AC=1;AF=0.500;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	0/1:213,158:0.43:371
chr12	120947948	rs500003	G	A	14591.77	.	AC=2;AF=1.00;AN=2;DB;DP=551;set=Intersection	GT:AD:AF:DP	1/1:0,531:1.00:531
chr12	120954490	rs3742049	C	T	8584.77	.	AC=1;AF=0.500;AN=2;DB;DP=911;set=Intersection	GT:AD:AF:DP	0/1:474,417:0.47:891
chr12	120966659	rs55848094	G	A	3155.77	.	AC=1;AF=0.500;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	0/1:198,144:0.42:342
chr12	120966921	rs3742052	A	G	3232.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:151,138:0.48:289
chr12	120990582	rs12309824	A	C	264.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:9,10:0.53:19
chr12	120992401	rs3213565	C	T	1554.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:75,66:0.47:141
chr12	120994932	rs7956998	G	A	2001.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr12	120995332	rs2292681	G	A	6141.77	.	AC=1;AF=0.500;AN=2;DB;DP=651;set=Intersection	GT:AD:AF:DP	0/1:352,293:0.45:645
chr12	120998443	rs603574	A	G	1328.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:61,58:0.49:119
chr12	120998481	rs787949	G	A	5004.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr12	121004564	rs35194242	CAA	C	971.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.347;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=7.476;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=1.398;QD=14.29;ReadPosRankSum=-1.039;SOR=2.093;set=HC	GT:AD:AF:DP	0/1:29,39:0.57:68
chr12	121004590	rs546417	C	A	2012.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:42,66:0.61:108
chr12	121008958	rs2280168	G	A	3479.77	.	AC=1;AF=0.500;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	0/1:186,168:0.47:354
chr12	121009198	rs651627	C	T	835.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:34,36:0.51:70
chr12	121012456	rs11611781	C	T	472.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:21,20:0.49:41
chr12	121014987	.	G	GT	405.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.248;ClippingRankSum=0.000;DP=280;ExcessHet=3.0103;FS=1.263;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.57;ReadPosRankSum=0.298;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:197,61:0.24:258
chr12	121017171	rs7174	A	G	6153.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:1,218:1.00:219
chr12	121017243	rs509445	A	C	3254.77	.	AC=1;AF=0.500;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	0/1:184,160:0.47:344
chr12	121017439	rs563920	A	G	9348.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chr12	121017474	rs3833953	GT	G	4976.73	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:142,147:0.51:289
chr12	121019323	rs591992	T	C	1467.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr12	121093629	rs112935060	CGTGCGT	C	2760.73	.	AC=1;AF=0.500;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	0/1:246,158:0.39:404
chr12	121094110	rs569499	T	C	490.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:10,23:0.70:33
chr12	121097622	rs529584	G	A	7410.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr12	121133037	rs504403	G	C	2119.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr12	121151062	rs3833788	CTCTCTTG	C	15502.73	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:0,348:1.00:348
chr12	121157535	rs56179458	GC	AA	3489.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr12	121157851	rs3752531	A	G	7495.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr12	121163518	rs2239760	C	A	1024.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr12	121174899	rs3914	T	C	9570.77	.	AC=2;AF=1.00;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	1/1:0,369:1.00:369
chr12	121175562	rs117636828	G	A	2763.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr12	121175610	rs117000908	G	A	5313.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr12	121175799	rs371550264	C	T	4245.77	.	AC=1;AF=0.500;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	0/1:190,197:0.51:387
chr12	121175984	rs555404	T	C	10656.77	.	AC=2;AF=1.00;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	1/1:0,389:1.00:389
chr12	121176679	rs3915	C	T	9809.77	.	AC=2;AF=1.00;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	1/1:0,370:1.00:370
chr12	121202917	rs74887195	G	A	1856.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:105,96:0.48:201
chr12	121202952	rs6490303	A	T	847.73	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:73,50:0.41:123
chr12	121204368	rs3213571	G	C	381.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.985;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=3.893;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.60;ReadPosRankSum=-0.867;SOR=0.199;set=HC	GT:AD:AF:DP	0/1:17,19:0.53:36
chr12	121220375	rs2393717	G	C	494.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:25,20:0.44:45
chr12	121221628	rs7137504	C	T	366.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:19,18:0.49:37
chr12	121222411	rs3213570	C	G	2423.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:131,118:0.47:249
chr12	121222469	rs3213569	T	C	1591.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:53,67:0.56:120
chr12	121222496	rs3213568	C	T	899.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:20,37:0.65:57
chr12	121222556	rs3213567	T	C	117.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:17,6:0.26:23
chr12	121248584	rs674021	G	A	9029.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:2,341:0.99:343
chr12	121341762	rs7966446	C	T	459.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:27,22:0.45:49
chr12	121341849	rs2686458	A	G	681.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr12	121416622	rs1169289	C	G	12987.77	.	AC=2;AF=1.00;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	1/1:0,469:1.00:469
chr12	121416650	rs1169288	A	C	3891.77	.	AC=1;AF=0.500;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	0/1:259,185:0.42:444
chr12	121416988	rs2244608	A	G	915.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:16,34:0.68:50
chr12	121426594	rs1169294	G	A	2479.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:103,104:0.50:207
chr12	121432299	rs55783344	C	T	1449.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:65,67:0.51:132
chr12	121434302	rs3751156	G	T	6169.77	.	AC=1;AF=0.500;AN=2;DB;DP=636;set=Intersection	GT:AD:AF:DP	0/1:326,295:0.48:621
chr12	121434630	rs55853809	C	CTCATTCAT	2340.73	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:77,61:0.44:138
chr12	121437221	rs1169304	T	C	9518.77	.	AC=1;AF=0.500;AN=2;DB;DP=974;set=Intersection	GT:AD:AF:DP	0/1:494,470:0.49:964
chr12	121437382	rs1169305	A	G	6721.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr12	121440410	rs71845478	GCACCCA	G	732.73	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:31,22:0.42:53
chr12	121442064	rs3751152	G	A	5108.77	.	AC=1;AF=0.500;AN=2;DB;DP=517;set=Intersection	GT:AD:AF:DP	0/1:265,249:0.48:514
chr12	121442959	rs139431288	TAAAA	T	2863.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.352;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=1.257;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=2.078;QD=18.12;ReadPosRankSum=-0.397;SOR=0.564;set=HC	GT:AD:AF:DP	0/1:81,77:0.49:158
chr12	121443004	rs140903629	CGAAA	C	1103.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.888;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=4.154;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.83;ReadPosRankSum=-0.279;SOR=1.362;set=HC	GT:AD:AF:DP	0/1:23,30:0.57:53
chr12	121443030	.	CA	C	445	.	AC=1;AF=0.500;AN=2;BRF=0.35;FR=0.5000;HP=13;HapScore=2;MGOF=74;MMLQ=23;MQ=60.0;NF=2;NR=23;PP=445;QD=18.28;SC=TAAAGAGAAACAAAAAAAAAA;SbPval=0.97;Source=Platypus;TC=42;TCF=9;TCR=33;TR=25;WE=121443038;WS=121443020;set=Platypus	GT:AD:AF:DP	0/1:17,25:0.60:42
chr12	121454257	rs2258227	T	A	9491.77	.	AC=1;AF=0.500;AN=2;DB;DP=1016;set=Intersection	GT:AD:AF:DP	0/1:544,462:0.46:1006
chr12	121458400	rs12819210	C	T	2144.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:94,102:0.52:196
chr12	121593019	rs1718125	C	T	1688.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:88,71:0.45:159
chr12	121593355	rs1653585	C	A	1073.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:60,48:0.44:108
chr12	121594056	rs208290	G	A	366.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:28,17:0.38:45
chr12	121598565	rs1794887	G	A	1314.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:43,58:0.57:101
chr12	121598652	rs1653583	G	A	3093.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:154,153:0.50:307
chr12	121600180	rs208293	C	T	1618.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:148,88:0.37:236
chr12	121600238	rs28360447	G	A	3607.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:109,167:0.61:276
chr12	121600253	rs208294	T	C	1931.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:159,101:0.39:260
chr12	121603053	rs208304	T	C	1162.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:57,45:0.44:102
chr12	121603118	rs507085	T	C	5762.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.486;ClippingRankSum=0.000;DB;DP=301;ExcessHet=3.0103;FS=1.428;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.40;ReadPosRankSum=-0.394;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:149,148:0.50:297
chr12	121603122	rs654856	C	A	5931.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.756;ClippingRankSum=0.000;DB;DP=323;ExcessHet=3.0103;FS=3.082;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.59;ReadPosRankSum=0.987;SOR=0.879;set=HC	GT:AD:AF:DP	0/1:160,159:0.50:319
chr12	121603745	rs208306	T	G	637.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:36,26:0.42:62
chr12	121603825	rs36144485	ATGTT	A	2893.73	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:120,80:0.40:200
chr12	121603856	rs208307	C	G	2861.77	.	AC=1;AF=0.500;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:181,137:0.43:318
chr12	121605599	rs686638	C	T	442.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:24,19:0.44:43
chr12	121613046	rs7137837	C	T	492.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:42,23:0.35:65
chr12	121613113	.	C	CAAAAAAAAA	296.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.487;ClippingRankSum=0.000;DP=140;ExcessHet=3.0103;FS=17.946;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=0.000;QD=3.33;ReadPosRankSum=-0.418;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:72,17:0.19:89
chr12	121615103	rs1718119	G	A	1693.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:86,83:0.49:169
chr12	121615283	rs1653598	T	C	445.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:19,22:0.54:41
chr12	121618278	.	C	CT	55.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.068;ClippingRankSum=0.000;DP=223;ExcessHet=3.0103;FS=4.015;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=4.140;QD=0.32;ReadPosRankSum=0.030;SOR=0.376;set=HC	GT:AD:AF:DP	0/1:146,28:0.16:174
chr12	121622007	rs12815078	A	G	574.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:33,23:0.41:56
chr12	121622023	rs1626329	C	T	720.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:46,31:0.40:77
chr12	121622304	rs3751143	A	C	6066.77	.	AC=1;AF=0.500;AN=2;DB;DP=596;set=Intersection	GT:AD:AF:DP	0/1:301,289:0.49:590
chr12	121622520	rs1653624	A	T	7978.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr12	121622563	rs1621388	G	A	1757.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:111,85:0.43:196
chr12	121647870	rs28360466	G	T	147.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chr12	121659999	rs1629287	G	A	8098.77	.	AC=1;AF=0.500;AN=2;DB;DP=716;set=Intersection	GT:AD:AF:DP	0/1:337,373:0.53:710
chr12	121660461	rs6489800	C	T	1554.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:66,71:0.52:137
chr12	121660508	rs145935941	C	A	5100.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:133,128:0.49:261
chr12	121660524	rs141792991	ATTC	A	5733.73	.	AC=1;AF=0.500;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	0/1:195,151:0.44:346
chr12	121660787	rs25643	T	C	2446.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:135,124:0.48:259
chr12	121666258	.	G	GTA	234.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.446;ClippingRankSum=0.000;DP=21;ExcessHet=3.0103;FS=6.767;MLEAC=1;MLEAF=0.500;MQ=61.02;MQRankSum=1.611;QD=12.35;ReadPosRankSum=-0.082;SOR=3.258;set=HC	GT:AD:AF:DP	0/1:10,9:0.47:19
chr12	121670276	rs28360472	A	G	6494.77	.	AC=1;AF=0.500;AN=2;DB;DP=667;set=Intersection	GT:AD:AF:DP	0/1:350,306:0.47:656
chr12	121682051	rs2686340	T	C	383.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:9,18:0.67:27
chr12	121690305	rs112943694	T	TCTGGTGATCCGC	306.73	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:11,9:0.45:20
chr12	121690548	rs2686344	T	C	3766.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.008;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.25;ReadPosRankSum=-1.385;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:84,102:0.55:186
chr12	121690555	rs2686345	T	C	3589.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.004;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=0.563;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.63;ReadPosRankSum=-0.655;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:82,92:0.53:174
chr12	121701433	rs117211511	G	A	961.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.705;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=2.381;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.45;ReadPosRankSum=0.115;SOR=1.075;set=HC	GT:AD:AF:DP	0/1:44,40:0.48:84
chr12	121706533	rs1718120	T	G	1647.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:84,80:0.49:164
chr12	121707321	rs1109453	G	A	1311.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:81,61:0.43:142
chr12	121712077	rs3817190	T	A	5085.77	.	AC=1;AF=0.500;AN=2;DB;DP=494;set=Intersection	GT:AD:AF:DP	0/1:249,235:0.49:484
chr12	121735660	.	CTTT	C	46.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.609;ClippingRankSum=0.000;DP=29;ExcessHet=3.0103;FS=2.754;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.46;ReadPosRankSum=2.073;SOR=1.675;set=HC	GT:AD:AF:DP	0/1:15,4:0.21:19
chr12	121764799	rs4980993	A	C	2989.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr12	121768248	rs2280067	C	T	1997.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr12	121773552	rs3751162	T	C	2272.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr12	121785795	rs1169961	C	A	1079.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:54,48:0.47:102
chr12	121789927	rs1799525	C	A	2146.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:112,92:0.45:204
chr12	121790178	rs11541850	G	A	2784.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:167,133:0.44:300
chr12	121853164	rs11065565	T	C	336.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:20,17:0.46:37
chr12	121870922	rs12427382	G	A	2523.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:111,115:0.51:226
chr12	121871006	rs11065575	A	C	2389.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:135,120:0.47:255
chr12	121878659	rs1064951	C	T	3801.77	.	AC=1;AF=0.500;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	0/1:185,185:0.50:370
chr12	121879111	rs2288154	G	C	870.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:36,35:0.49:71
chr12	121880520	rs3751131	G	A	3361.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:131,151:0.54:282
chr12	121881848	rs10849885	G	A	3374.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:168,165:0.50:333
chr12	121882098	rs3817551	T	G	7046.77	.	AC=1;AF=0.500;AN=2;DB;DP=824;set=Intersection	GT:AD:AF:DP	0/1:430,367:0.46:797
chr12	121954670	rs11433051	G	GA	276.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.340;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=2.861;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=0.955;QD=5.77;ReadPosRankSum=0.324;SOR=1.302;set=HC	GT:AD:AF:DP	0/1:26,22:0.46:48
chr12	122064773	rs141919534	CCCGCCA	C	11829.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.883;ClippingRankSum=0.000;DB;DP=445;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.22;MQRankSum=0.219;QD=27.58;ReadPosRankSum=-1.392;SOR=1.008;set=HC	GT:AD:AF:DP	1/1:2,427:1.00:429
chr12	122079441	rs3825175	T	C	9804.77	.	AC=1;AF=0.500;AN=2;DB;DP=985;set=Intersection	GT:AD:AF:DP	0/1:495,480:0.49:975
chr12	122097043	rs63632160	GCACA	G,GCACACACA	4552.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.720;ClippingRankSum=0.000;DB;DP=225;ExcessHet=3.0103;FS=1.871;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.10;MQRankSum=0.355;QD=30.35;ReadPosRankSum=-1.865;SOR=1.358;set=HC	GT:AD:AF:DP	1/2:7,67,76:0.45,0.51:150
chr12	122097305	rs2720032	G	C	4727.77	.	AC=1;AF=0.500;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	0/1:179,225:0.56:404
chr12	122186268	rs28651018	C	T	3512.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:156,165:0.51:321
chr12	122186317	rs28655666	G	A	3675.77	.	AC=1;AF=0.500;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	0/1:188,174:0.48:362
chr12	122208968	rs11608693	G	A	1508.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:82,64:0.44:146
chr12	122209333	rs12299238	G	A	4120.77	.	AC=1;AF=0.500;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	0/1:148,192:0.56:340
chr12	122212752	rs7314742	G	T	1794.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:72,82:0.53:154
chr12	122217856	rs59641582	G	GGT	6325.73	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr12	122218489	rs7136373	C	G	4639.77	.	AC=1;AF=0.500;AN=2;DB;DP=473;set=Intersection	GT:AD:AF:DP	0/1:255,211:0.45:466
chr12	122231368	rs2707067	C	A	1971.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:104,97:0.48:201
chr12	122231573	rs2707066	C	T	284.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:18,14:0.44:32
chr12	122243905	rs1168666	C	T	6821.77	.	AC=1;AF=0.500;AN=2;DB;DP=658;set=Intersection	GT:AD:AF:DP	0/1:325,327:0.50:652
chr12	122248582	rs895952	C	G	13496.77	.	AC=1;AF=0.500;AN=2;DB;DP=1468;set=Intersection	GT:AD:AF:DP	0/1:795,655:0.45:1450
chr12	122252200	.	A	C	532.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.543;ClippingRankSum=0.000;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.58;ReadPosRankSum=-0.847;SOR=0.780;set=HC	GT:AD:AF:DP	0/1:22,24:0.52:46
chr12	122257890	rs11043202	G	A	738.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:50,33:0.40:83
chr12	122261456	rs3741593	G	A	6950.77	.	AC=1;AF=0.500;AN=2;DB;DP=696;set=Intersection	GT:AD:AF:DP	0/1:341,331:0.49:672
chr12	122281575	rs1795963	A	G	826.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:36,41:0.53:77
chr12	122284715	rs2247291	T	C	6765.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr12	122287132	rs3832816	CT	C	987.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr12	122295335	rs1154510	T	C	15498.77	.	AC=2;AF=1.00;AN=2;DB;DP=603;set=Intersection	GT:AD:AF:DP	1/1:0,592:1.00:592
chr12	122296784	rs3741591	C	T	885.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:28,39:0.58:67
chr12	122326812	rs2230681	T	C	8163.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr12	122348666	rs34301662	C	CA	137.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.585;ClippingRankSum=0.000;DB;DP=251;ExcessHet=3.0103;FS=0.729;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=2.907;QD=0.61;ReadPosRankSum=1.243;SOR=0.577;set=HC	GT:AD:AF:DP	0/1:186,39:0.17:225
chr12	122348746	rs4069666	A	G	10057.77	.	AC=1;AF=0.500;AN=2;DB;DP=1010;MQ=60.02;set=Intersection	GT:AD:AF:DP	0/1:499,498:0.50:997
chr12	122348938	rs142734893	T	TTTTTG	1527.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.447;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.118;QD=17.36;ReadPosRankSum=5.754;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:48,40:0.45:88
chr12	122353796	rs14259	A	G	1437.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:130,84:0.39:214
chr12	122359172	rs6486782	T	C	1693.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:71,80:0.53:151
chr12	122359397	rs142042908	G	GGAGGAGGAGGAGAAA	8754.73	.	AC=2;AF=1.00;AN=2;DB;DP=202;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.90;QD=53.06;SOR=1.278;set=HC	GT:AD:AF:DP	1/1:0,165:1.00:165
chr12	122359698	rs10675519	C	CTT,CTTT	782.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.456;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=27.95;ReadPosRankSum=-0.225;SOR=1.609;set=HC	GT:AD:AF:DP	1/2:2,11,15:0.39,0.54:28
chr12	122361929	rs34885077	CT	C	1298.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr12	122369762	rs7313748	C	T	1736.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:107,92:0.46:199
chr12	122386807	rs76025563	A	G	252.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.020;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=3.854;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.87;ReadPosRankSum=-0.459;SOR=2.387;set=HC	GT:AD:AF:DP	0/1:7,10:0.59:17
chr12	122389248	rs1185260	A	G	1815.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr12	122391963	rs1154513	A	G	3868.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr12	122394921	rs11043271	A	C	1160.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:53,44:0.45:97
chr12	122396395	rs17852561	C	T	4779.77	.	AC=1;AF=0.500;AN=2;DB;DP=499;set=Intersection	GT:AD:AF:DP	0/1:265,226:0.46:491
chr12	122405912	rs1169081	G	T	5165.77	.	AC=1;AF=0.500;AN=2;DB;DP=498;set=Intersection	GT:AD:AF:DP	0/1:248,248:0.50:496
chr12	122409664	rs658957	T	C	1750.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:1,66:0.99:67
chr12	122439369	rs1182927	T	C	10954.77	.	AC=2;AF=1.00;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	1/1:0,406:1.00:406
chr12	122468756	rs59397548	A	G	956.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:65,48:0.42:113
chr12	122481641	rs111943468	C	CA	169.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.369;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=1.692;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.37;ReadPosRankSum=-0.548;SOR=1.004;set=HC	GT:AD:AF:DP	0/1:96,28:0.23:124
chr12	122497001	rs28629903	T	C	5998.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr12	122516897	rs147186759	G	A	2735.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:94,120:0.56:214
chr12	122611620	rs75503016	A	G	431.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:11,21:0.66:32
chr12	122611641	rs78324047	C	T	527.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:16,22:0.58:38
chr12	122612625	rs10847611	C	G	1051.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:36,44:0.55:80
chr12	122613599	rs10847853	A	G	2122.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:84,95:0.53:179
chr12	122614209	rs5801481	CT	C	8696.73	.	AC=1;AF=0.500;AN=2;DB;DP=582;set=Intersection	GT:AD:AF:DP	0/1:248,301:0.55:549
chr12	122614335	rs7487286	G	A	1453.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:56,58:0.51:114
chr12	122615515	rs4758654	C	G	8603.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr12	122616759	rs7955571	G	A	11795.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.02;SOR=1.214;set=HC	GT:AD:AF:DP	1/1:0,262:1.00:262
chr12	122616766	rs7955575	G	A	12118.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.75;SOR=1.191;set=HC	GT:AD:AF:DP	1/1:0,277:1.00:277
chr12	122617989	rs7978353	A	G	14998.77	.	AC=2;AF=1.00;AN=2;DB;DP=558;set=Intersection	GT:AD:AF:DP	1/1:0,546:1.00:546
chr12	122618131	rs36045144	A	G	5489.77	.	AC=1;AF=0.500;AN=2;DB;DP=758;set=Intersection	GT:AD:AF:DP	0/1:372,341:0.48:713
chr12	122618573	rs181814758	G	A	7210.77	.	AC=1;AF=0.500;AN=2;DB;DP=726;set=Intersection	GT:AD:AF:DP	0/1:383,339:0.47:722
chr12	122618752	rs370257177	G	GT	217.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.136;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=0.000;QD=4.35;ReadPosRankSum=-1.247;SOR=0.450;set=HC	GT:AD:AF:DP	0/1:28,22:0.44:50
chr12	122619528	rs11287019	CT	C	2518.73	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr12	122622207	rs11307581	CT	C	22226.73	.	AC=2;AF=1.00;AN=2;DB;DP=644;set=Intersection	GT:AD:AF:DP	1/1:0,614:1.00:614
chr12	122622637	rs74527410	C	T	436.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:18,17:0.49:35
chr12	122623000	rs4758686	T	C	10291.77	.	AC=2;AF=1.00;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	1/1:0,387:1.00:387
chr12	122623595	rs9668430	A	G	1768.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:104,85:0.45:189
chr12	122625212	rs7488857	A	G	1699.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr12	122626381	rs11057509	G	A	1788.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:89,83:0.48:172
chr12	122626842	rs4758685	G	A	21093.77	.	AC=2;AF=1.00;AN=2;DB;DP=812;set=Intersection	GT:AD:AF:DP	1/1:0,806:1.00:806
chr12	122658383	rs6489173	A	G	7007.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr12	122667631	rs77165791	T	G	2253.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:98,111:0.53:209
chr12	122674032	rs10847725	C	T	5869.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr12	122674143	rs11060051	G	C	1532.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:74,73:0.50:147
chr12	122674758	rs4758651	G	A	27357.77	.	AC=2;AF=1.00;AN=2;DB;DP=1032;set=Intersection	GT:AD:AF:DP	1/1:2,1012:1.00:1014
chr12	122684966	rs11060679	G	C	4970.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr12	122691738	rs4758675	C	A	16737.77	.	AC=2;AF=1.00;AN=2;DB;DP=608;set=Intersection	GT:AD:AF:DP	1/1:0,599:1.00:599
chr12	122710554	rs202028496	G	C	2593.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:142,125:0.47:267
chr12	122723317	.	TAC	T	788.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.332;ClippingRankSum=0.000;DP=256;ExcessHet=3.0103;FS=6.119;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=2.107;QD=5.80;ReadPosRankSum=1.928;SOR=0.291;set=HC	GT:AD:AF:DP	0/1:88,48:0.35:136
chr12	122738097	.	CA	C	30.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.790;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;FS=8.141;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.71;ReadPosRankSum=0.534;SOR=1.739;set=HC	GT:AD:AF:DP	0/1:10,8:0.44:18
chr12	122760929	.	CCA	C	1130.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.349;ClippingRankSum=0.000;DP=433;ExcessHet=3.0103;FS=1.704;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=0.000;QD=2.94;ReadPosRankSum=0.078;SOR=0.553;set=HC	GT:AD:AF:DP	0/1:308,77:0.20:385
chr12	122762763	rs3066171	G	GA	162.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.923;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=6.088;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=2.821;QD=1.00;ReadPosRankSum=0.736;SOR=1.047;set=HC	GT:AD:AF:DP	0/1:125,37:0.23:162
chr12	122804034	rs3825097	A	G	612.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:22,26:0.54:48
chr12	122812503	rs1129167	G	C	4205.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr12	122817507	rs7956480	A	G	3699.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr12	122838956	rs4997380	A	G	1592.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.69;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr12	122864789	.	CA	C	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.120;ClippingRankSum=0.000;DP=63;ExcessHet=3.0103;FS=5.854;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.54;ReadPosRankSum=-1.445;SOR=1.911;set=HC	GT:AD:AF:DP	0/1:45,14:0.24:59
chr12	122962337	rs145158700	C	CA	243.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.631;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=1.897;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=2.530;QD=2.05;ReadPosRankSum=0.774;SOR=0.925;set=HC	GT:AD:AF:DP	0/1:85,34:0.29:119
chr12	122964708	rs10846978	T	C	1758.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr12	122965020	rs63098963	C	CT	395.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.917;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.77;ReadPosRankSum=-0.912;SOR=0.495;set=HC	GT:AD:AF:DP	1/1:5,26:0.84:31
chr12	122966016	rs57144421	T	TA	1213.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.413;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=7.074;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=0.000;QD=16.18;ReadPosRankSum=1.393;SOR=1.230;set=HC	GT:AD:AF:DP	1/1:9,66:0.88:75
chr12	122966373	rs4758692	T	C	2359.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr12	122968149	rs11354559	GA	G	1510.73	.	AC=1;AF=0.500;AN=2;DB;DP=194;MQ=60.06;set=Intersection	GT:AD:AF:DP	0/1:82,87:0.51:169
chr12	122974107	.	T	C	1216.77	.	AC=1;AF=0.500;AN=2;DP=153;set=Intersection	GT:AD:AF:DP	0/1:89,63:0.41:152
chr12	122983460	rs7314638	A	G	4560.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr12	122991478	rs9988963	C	G	2910.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr12	122993011	rs10773230	C	T	2111.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr12	122995468	rs10709275	GA	G	1637.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr12	122999109	rs139913874	G	T	104.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.322;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.55;ReadPosRankSum=0.319;SOR=0.814;set=HC	GT:AD:AF:DP	0/1:9,7:0.44:16
chr12	122999358	rs11322682	CA	C	973.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.507;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=19.09;ReadPosRankSum=0.442;SOR=0.293;set=HC	GT:AD:AF:DP	1/1:1,50:0.98:51
chr12	122999535	rs6489056	C	T	2329.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr12	123001737	rs57311174	G	A	3628.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr12	123003317	rs11058562	T	C	956.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:37,42:0.53:79
chr12	123024332	rs35303600	C	CT	75.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.042;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=1.146;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.674;QD=1.13;ReadPosRankSum=0.019;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:52,15:0.22:67
chr12	123030788	rs7968222	G	T	1161.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:71,58:0.45:129
chr12	123031330	rs78620163	A	G	1018.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.261;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=3.667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.70;ReadPosRankSum=0.693;SOR=0.422;set=HC	GT:AD:AF:DP	0/1:54,51:0.49:105
chr12	123061352	rs145299175	A	AT	363.73	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:10,20:0.67:30
chr12	123067587	rs7398861	G	A	1248.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:50,57:0.53:107
chr12	123069590	rs11420082	C	CT	61.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.060;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=4.709;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.01;ReadPosRankSum=-0.357;SOR=0.510;set=HC	GT:AD:AF:DP	0/1:48,13:0.21:61
chr12	123071365	rs7311684	A	T	782.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.588;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=2.893;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.02;ReadPosRankSum=-1.330;SOR=0.274;set=HC	GT:AD:AF:DP	0/1:23,23:0.50:46
chr12	123071366	rs7315477	T	A,TTTTA	1866.73	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=45.53;SOR=2.038;set=HC	GT:AD:AF:DP	1/2:0,21,20:0.51,0.49:41
chr12	123079020	rs10847242	T	G	729.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:27,35:0.56:62
chr12	123079035	rs4319547	A	G	1760.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr12	123087442	rs7307735	A	G	10368.77	.	AC=2;AF=1.00;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	1/1:0,368:1.00:368
chr12	123087819	.	T	TA	289.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.977;ClippingRankSum=0.000;DP=135;ExcessHet=3.0103;FS=4.215;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.000;QD=2.76;ReadPosRankSum=-0.657;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:70,35:0.33:105
chr12	123102921	rs11837038	T	G	4502.77	.	AC=1;AF=0.500;AN=2;DB;DP=468;set=Intersection	GT:AD:AF:DP	0/1:247,217:0.47:464
chr12	123103016	rs7301589	G	T	1974.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.694;ClippingRankSum=0.000;DB;DP=488;ExcessHet=3.0103;FS=7.994;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.32;ReadPosRankSum=0.861;SOR=1.305;set=HC	GT:AD:AF:DP	0/1:319,138:0.30:457
chr12	123106893	rs1014188	G	A	96.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:8,5:0.38:13
chr12	123107165	.	T	TA	107.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.954;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.29;ReadPosRankSum=-0.195;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:32,15:0.32:47
chr12	123110654	rs3803005	T	C	1045.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr12	123186880	rs28682471	C	T	816.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.277;ClippingRankSum=0.000;DB;DP=614;ExcessHet=3.0103;FS=38.226;MLEAC=1;MLEAF=0.500;MQ=51.23;MQRankSum=-9.961;QD=1.33;ReadPosRankSum=-2.254;SOR=3.250;set=HC	GT:AD:AF:DP	0/1:525,88:0.14:613
chr12	123200099	rs61955034	T	C	2778.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:148,132:0.47:280
chr12	123200247	rs56308926	G	C	11407.77	.	AC=2;AF=1.00;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	1/1:0,412:1.00:412
chr12	123200334	rs116821988	T	C	400.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=12.893;ClippingRankSum=0.000;DB;DP=442;ExcessHet=3.0103;FS=53.753;MLEAC=1;MLEAF=0.500;MQ=46.88;MQRankSum=-11.250;QD=0.91;ReadPosRankSum=0.184;SOR=7.548;set=HC	GT:AD:AF:DP	0/1:391,50:0.11:441
chr12	123200693	rs17884481	A	G	2889.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:179,137:0.43:316
chr12	123200768	rs1798192	T	G	4893.77	.	AC=1;AF=0.500;AN=2;DB;DP=499;set=Intersection	GT:AD:AF:DP	0/1:258,239:0.48:497
chr12	123200937	rs1696352	T	G	5982.77	.	AC=1;AF=0.500;AN=2;DB;DP=560;MQ=59.87;set=Intersection	GT:AD:AF:DP	0/1:282,269:0.49:551
chr12	123201291	rs3825156	A	G	4388.77	.	AC=1;AF=0.500;AN=2;DB;DP=540;set=Intersection	GT:AD:AF:DP	0/1:314,216:0.41:530
chr12	123201445	rs56239404	TAA	T	184.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.258;ClippingRankSum=-0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.26;ReadPosRankSum=-2.559;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:7,11:0.61:18
chr12	123246693	.	A	G	1318.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.766;ClippingRankSum=0.000;DP=142;ExcessHet=3.0103;FS=0.617;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.29;ReadPosRankSum=0.297;SOR=0.762;set=HC	GT:AD:AF:DP	0/1:76,66:0.46:142
chr12	123265952	rs1798563	A	G	1981.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:104,87:0.46:191
chr12	123281967	rs10744394	G	A	9258.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	1/1:0,352:1.00:352
chr12	123282110	rs139377064	C	T	469.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:12,20:0.62:32
chr12	123286287	rs75175797	G	A	2254.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:89,104:0.54:193
chr12	123290951	rs34775544	GTT	G,GTTT	2379.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.827;ClippingRankSum=0.000;DB;DP=292;ExcessHet=3.0103;FS=2.320;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.11;MQRankSum=0.755;QD=11.96;ReadPosRankSum=-0.116;SOR=1.140;set=HC	GT:AD:AF:DP	1/2:47,107,45:0.54,0.23:199
chr12	123297718	rs4759391	T	A	675.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:25,29:0.54:54
chr12	123297902	rs55716280	C	T	1739.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:94,87:0.48:181
chr12	123307754	rs7954285	C	T	480.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.521;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=1.932;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.03;ReadPosRankSum=-0.185;SOR=1.519;set=HC	GT:AD:AF:DP	0/1:11,19:0.63:30
chr12	123307754	.	CA	TG	243	.	AC=1;AF=0.500;AN=2;BRF=0.36;FR=0.5000;HP=2;HapScore=2;MGOF=1;MMLQ=24;MQ=60.0;NF=12;NR=2;PP=243;QD=21.1762767759;SC=GTGATCCGCCCACCCTGGCCT;SbPval=0.71;Source=Platypus;TC=23;TCF=19;TCR=4;TR=14;WE=123307763;WS=123307744;set=Platypus	GT:AD:AF:DP	0/1:9,14:0.61:23
chr12	123307755	rs2604851	A	G	1166.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.64;SOR=2.694;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr12	123307863	rs78108054	A	C	1520.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:65,69:0.51:134
chr12	123319647	rs112066678	A	C	961.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.723;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=1.922;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.77;ReadPosRankSum=-1.248;SOR=1.519;set=HC	GT:AD:AF:DP	0/1:26,35:0.57:61
chr12	123320194	.	AGCGGGCGGCGGGCG	A	2262.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.903;ClippingRankSum=0.000;DP=143;ExcessHet=3.0103;FS=1.658;MLEAC=1;MLEAF=0.500;MQ=60.68;MQRankSum=2.639;QD=22.86;ReadPosRankSum=0.052;SOR=0.939;set=HC	GT:AD:AF:DP	0/1:41,58:0.59:99
chr12	123333065	rs2135014	C	T	6158.77	.	AC=1;AF=0.500;AN=2;DB;DP=662;set=Intersection	GT:AD:AF:DP	0/1:354,306:0.46:660
chr12	123334929	.	G	T	148	.	AC=1;AF=0.500;AN=2;BRF=0.34;FR=0.5000;HP=7;HapScore=1;MGOF=27;MMLQ=28;MQ=55.69;NF=9;NR=9;PP=148;QD=10.1539562526;SC=GCCGCTGGGTGGGGGGGGCCC;SbPval=0.29;Source=Platypus;TC=58;TCF=23;TCR=35;TR=18;WE=123334937;WS=123334919;set=Platypus	GT:AD:AF:DP	0/1:40,18:0.31:58
chr12	123335240	.	T	TG	118	.	AC=1;AF=0.500;AN=2;BRF=0.52;FR=0.5000;HP=6;HapScore=2;MGOF=46;MMLQ=23;MQ=52.18;NF=6;NR=0;PP=118;QD=23.8333333333;SC=GCCGCTGGGTTGGGGGGCCCT;SbPval=1.0;Source=Platypus;TC=19;TCF=17;TCR=2;TR=6;WE=123335248;WS=123335230;set=Platypus	GT:AD:AF:DP	0/1:13,6:0.32:19
chr12	123335287	rs12369846	A	G	325.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.806;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.83;MQRankSum=0.039;QD=8.80;ReadPosRankSum=-0.192;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:18,19:0.51:37
chr12	123335325	rs77455920	C	T	490.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.487;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=8.433;MLEAC=1;MLEAF=0.500;MQ=59.56;MQRankSum=0.842;QD=6.13;ReadPosRankSum=1.182;SOR=1.888;set=HC	GT:AD:AF:DP	0/1:48,32:0.40:80
chr12	123335483	rs2271048	A	G	7543.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.737;ClippingRankSum=0.000;DB;DP=220;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=35.58;ReadPosRankSum=2.290;SOR=0.834;set=HC	GT:AD:AF:DP	1/1:2,210:0.99:212
chr12	123335483	.	AGCCAG	GGCCAA,GGCCAG	1033	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.48;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=8;MMLQ=23;MQ=60.0;NF=35,59;NR=40,73;PP=1033,864;QD=14.4862383315;SC=ATGGCTACATAGCCAGTTCCC;SbPval=0.47;Source=Platypus;TC=132;TCF=59;TCR=73;TR=75,132;WE=123335496;WS=123335473;set=Platypus	GT:AF:DP	0/1:0.57:132
chr12	123335488	rs2271049	G	A	2248.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.640;ClippingRankSum=0.000;DB;DP=208;ExcessHet=3.0103;FS=1.075;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.81;ReadPosRankSum=1.279;SOR=0.599;set=HC	GT:AD:AF:DP	0/1:97,111:0.53:208
chr12	123335527	rs2271050	C	T	1571.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:57,77:0.57:134
chr12	123339344	rs2292136	A	C,G	2723.77	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=109;set=Intersection	GT:AF:DP	1/2:0.49,0.51:106
chr12	123339712	rs2292138	A	G	7268.77	.	AC=1;AF=0.500;AN=2;DB;DP=643;set=Intersection	GT:AD:AF:DP	0/1:307,328:0.52:635
chr12	123340453	rs11418615	G	GC	1698.73	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:63,58:0.48:121
chr12	123341289	rs897386	A	C	690.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.015;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.01;ReadPosRankSum=-0.161;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:47,22:0.32:69
chr12	123341297	rs897385	A	G	652.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.982;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.45;ReadPosRankSum=-0.852;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:38,19:0.33:57
chr12	123341833	rs7138398	G	C	4387.77	.	AC=1;AF=0.500;AN=2;DB;DP=469;set=Intersection	GT:AD:AF:DP	0/1:252,211:0.46:463
chr12	123341863	rs2343109	G	C	3076.77	.	AC=1;AF=0.500;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	0/1:210,162:0.44:372
chr12	123342597	rs200827046	TCCTTGG	T	5037.73	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:77,127:0.62:204
chr12	123342628	rs34131980	CCTCTT	C	3666.73	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:169,102:0.38:271
chr12	123342885	rs12313006	C	T	2956.77	.	AC=1;AF=0.500;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	0/1:207,153:0.42:360
chr12	123343571	rs2343110	T	G	11915.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=599;set=Intersection	GT:AD:AF:DP	0/1:286,309:0.52:595
chr12	123343572	rs5801491	G	GGC	6566.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=597;set=Intersection	GT:AD:AF:DP	0/1:292,274:0.48:566
chr12	123344021	rs2271051	G	A	8355.77	.	AC=1;AF=0.500;AN=2;DB;DP=841;set=Intersection	GT:AD:AF:DP	0/1:414,415:0.50:829
chr12	123344910	rs937765	A	C	8078.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:1,295:1.00:296
chr12	123345347	rs7306948	G	A	10026.77	.	AC=2;AF=1.00;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	1/1:0,358:1.00:358
chr12	123345360	rs7298176	T	C	9809.77	.	AC=2;AF=1.00;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	1/1:0,359:1.00:359
chr12	123345736	rs10847910	C	G	25689.77	.	AC=2;AF=1.00;AN=2;DB;DP=750;set=Intersection	GT:AD:AF:DP	1/1:0,743:1.00:743
chr12	123345756	rs3215148	G	GC	8908.73	.	AC=1;AF=0.500;AN=2;DB;DP=669;set=Intersection	GT:AD:AF:DP	0/1:304,332:0.52:636
chr12	123352179	rs3825143	C	T	1387.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:89,67:0.43:156
chr12	123425575	rs4148866	C	T	3911.77	.	AC=1;AF=0.500;AN=2;DB;DP=439;set=Intersection	GT:AD:AF:DP	0/1:237,195:0.45:432
chr12	123433137	rs10848106	T	C	2280.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr12	123460297	rs148367749	TAGAG	T	8771.73	.	AC=1;AF=0.500;AN=2;DB;DP=491;set=Intersection	GT:AD:AF:DP	0/1:253,232:0.48:485
chr12	123460823	rs883563	A	G	4660.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr12	123460962	rs884956	T	C	10493.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	1/1:0,377:1.00:377
chr12	123466111	rs55742290	C	T	6029.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr12	123471402	rs2049506	T	C	5402.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr12	123473254	rs1463877	T	C	5301.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr12	123476586	rs7135296	G	A	4371.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr12	123477311	rs937564	T	C	528.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr12	123480996	rs111787219	C	T	2428.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:105,116:0.52:221
chr12	123485188	rs883263	A	G	9756.77	.	AC=2;AF=1.00;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	1/1:0,362:1.00:362
chr12	123492112	rs3897102	C	T	532.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:12,20:0.62:32
chr12	123645803	rs1051431	G	A	18995.77	.	AC=2;AF=1.00;AN=2;DB;DP=727;set=Intersection	GT:AD:AF:DP	1/1:0,720:1.00:720
chr12	123647725	rs1727296	G	C	7259.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr12	123651162	rs1716167	A	G	3517.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr12	123664514	rs1727301	G	A	1201.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:54,59:0.52:113
chr12	123665695	rs1727306	A	G	6455.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr12	123679171	.	A	ATT,ATTT	657.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.493;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=3.385;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=24.36;ReadPosRankSum=1.344;SOR=2.215;set=HC	GT:AD:AF:DP	1/2:2,15,10:0.56,0.37:27
chr12	123682594	rs11610710	G	A	961.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr12	123682630	.	CA	C	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.757;ClippingRankSum=0.000;DP=55;ExcessHet=3.0103;FS=8.507;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.78;ReadPosRankSum=-0.569;SOR=0.118;set=HC	GT:AD:AF:DP	0/1:38,14:0.27:52
chr12	123694724	rs2682434	C	T	6869.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr12	123699200	rs77954523	GTTT	G	2746.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr12	123699520	rs1727322	A	G	4536.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr12	123703103	rs2851451	T	C	1522.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr12	123707527	rs34047404	GTA	G	3989.73	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:24,135:0.85:159
chr12	123707552	rs36043549	TA	T	7088.73	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr12	123710835	rs1626703	A	C	1355.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr12	123715113	rs941306	C	T	786.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr12	123738678	rs1568427	A	G	1026.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr12	123746357	rs4759416	C	G	19518.77	.	AC=2;AF=1.00;AN=2;DB;DP=719;set=Intersection	GT:AD:AF:DP	1/1:0,713:1.00:713
chr12	123746510	rs4759417	C	T	6309.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr12	123751726	rs2271976	A	C	2674.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr12	123756001	rs185878457	G	A	879.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr12	123782483	.	A	AT	1259.73	.	AC=1;AF=0.500;AN=2;DP=179;set=Intersection	GT:AD:AF:DP	0/1:100,71:0.42:171
chr12	123782803	rs111488882	ATTTCT	A	1589.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.585;ClippingRankSum=0.000;DB;DP=215;ExcessHet=3.0103;FS=1.583;MLEAC=1;MLEAF=0.500;MQ=61.30;MQRankSum=0.136;QD=13.47;ReadPosRankSum=0.515;SOR=1.410;set=HC	GT:AD:AF:DP	0/1:22,96:0.81:118
chr12	123794022	rs6488867	T	C	11933.77	.	AC=2;AF=1.00;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	1/1:0,416:1.00:416
chr12	123798074	rs10846513	A	G	715.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr12	123801672	rs10846515	T	G	10141.77	.	AC=2;AF=1.00;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	1/1:0,383:1.00:383
chr12	123810662	rs111400678	A	AC	7685.73	.	AC=2;AF=1.00;AN=2;DB;DP=248;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.31;QD=31.50;SOR=2.026;set=HC	GT:AD:AF:DP	1/1:0,244:1.00:244
chr12	123812207	rs7959415	C	T	10640.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:0,379:1.00:379
chr12	123812611	rs10846517	A	G	1435.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr12	123813493	rs7301163	C	A	2567.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr12	123815146	rs369148541	TA	T	346.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.336;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=-2.453;QD=11.96;ReadPosRankSum=-1.098;SOR=1.255;set=HC	GT:AD:AF:DP	1/1:3,26:0.90:29
chr12	123815668	rs6488869	A	C	2348.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr12	123816007	rs11282939	T	TATGTTG	5105.73	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr12	123818738	rs145199462	T	C	3477.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:143,170:0.54:313
chr12	123818853	rs201726534	CAT	C	2440.73	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr12	123821234	rs7486223	T	A	1861.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr12	123832710	rs11325003	TA	T	14097.73	.	AC=2;AF=1.00;AN=2;DB;DP=521;set=Intersection	GT:AD:AF:DP	1/1:0,493:1.00:493
chr12	123832746	rs10846523	G	A	10001.77	.	AC=2;AF=1.00;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	1/1:0,369:1.00:369
chr12	123879975	rs28655516	T	C	3027.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr12	123907750	rs71085902	G	GT	89.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.519;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.534;QD=1.21;ReadPosRankSum=-0.866;SOR=0.906;set=HC	GT:AD:AF:DP	0/1:57,17:0.23:74
chr12	123960444	rs375190049	ATTTTTT	A	560.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=32.98;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:1,16:0.94:17
chr12	123960474	rs28971833	A	G	572.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr12	124008073	rs2292500	A	G	9026.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:0,336:1.00:336
chr12	124069111	rs71088937	GGGC	G	5485.73	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:1,126:0.99:127
chr12	124069213	rs786446	T	C	6084.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr12	124072268	rs35178369	G	T	644.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:22,29:0.57:51
chr12	124086620	rs786427	G	C	948.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr12	124086998	rs786428	C	G	1354.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr12	124090453	rs786436	A	G	5344.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr12	124090605	rs4047521	ACT	A	9061.73	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr12	124102562	.	G	GT	209.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.643;ClippingRankSum=0.000;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=-1.338;QD=2.59;ReadPosRankSum=1.169;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:54,27:0.33:81
chr12	124144572	rs3215246	CT	C	55.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.507;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=1.775;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=2.998;QD=0.31;ReadPosRankSum=1.328;SOR=0.498;set=HC	GT:AD:AF:DP	0/1:148,30:0.17:178
chr12	124172760	.	CT	C	309.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.425;ClippingRankSum=0.000;DP=163;ExcessHet=3.0103;FS=1.162;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.95;ReadPosRankSum=0.722;SOR=0.919;set=HC	GT:AD:AF:DP	0/1:60,45:0.43:105
chr12	124207098	rs7301641	T	C	3701.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr12	124209332	rs1139789	T	C	9477.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr12	124209352	rs11837144	C	T	8858.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr12	124210782	rs1399961	T	C	5682.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr12	124218359	rs10744159	T	G	2682.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr12	124220055	rs2271660	T	C	10456.77	.	AC=2;AF=1.00;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	1/1:0,395:1.00:395
chr12	124220354	rs2333838	A	C	733.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr12	124229429	rs7135542	T	C	11869.77	.	AC=2;AF=1.00;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	1/1:0,450:1.00:450
chr12	124242458	rs370511382	CT	C	69.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.286;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.43;ReadPosRankSum=-0.200;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:128,35:0.21:163
chr12	124246910	rs116918834	G	A	1068.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:96,58:0.38:154
chr12	124258887	rs7131750	T	C	1740.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr12	124265687	rs11057353	T	C	14240.77	.	AC=2;AF=1.00;AN=2;DB;DP=542;set=Intersection	GT:AD:AF:DP	1/1:1,532:1.00:533
chr12	124267638	rs11057354	A	G	4715.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr12	124267703	rs11057355	T	C	6635.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr12	124268458	rs7303002	A	G	2578.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr12	124274474	rs10846559	A	G	3753.77	.	AC=1;AF=0.500;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	0/1:168,175:0.51:343
chr12	124274758	rs35056478	C	CT	277.73	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:23,19:0.45:42
chr12	124281419	.	A	AT	183.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.484;ClippingRankSum=0.000;DP=145;ExcessHet=3.0103;FS=9.208;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=2.156;QD=1.82;ReadPosRankSum=0.821;SOR=0.143;set=HC	GT:AD:AF:DP	0/1:75,26:0.26:101
chr12	124315027	.	T	A	72.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.072;ClippingRankSum=0.000;DP=98;ExcessHet=3.0103;FS=5.295;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.76;ReadPosRankSum=-0.715;SOR=0.121;set=HC	GT:AD:AF:DP	0/1:83,13:0.14:96
chr12	124315342	.	AT	A	1347	.	AC=1;AF=0.500;AN=2;BRF=0.32;FR=0.5000;HP=14;HapScore=2;MGOF=15;MMLQ=26;MQ=59.81;NF=1;NR=49;PP=1347;QD=27.0;SC=AAAAAAAAAAATTAGCTGAGC;SbPval=0.86;Source=Platypus;TC=146;TCF=6;TCR=140;TR=50;WE=124315351;WS=124315317;set=Platypus	GT:AD:AF:DP	1/0:96,50:0.34:146
chr12	124315343	rs7976816	T	A	487.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.123;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=0.856;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.43;ReadPosRankSum=0.557;SOR=0.558;set=HC	GT:AD:AF:DP	0/1:99,43:0.30:142
chr12	124319864	rs4930730	T	G	1316.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:77,67:0.47:144
chr12	124325977	rs4930729	T	G	6839.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr12	124330440	rs4930728	G	A	5979.77	.	AC=1;AF=0.500;AN=2;DB;DP=603;set=Intersection	GT:AD:AF:DP	0/1:310,284:0.48:594
chr12	124332702	rs10846561	A	G	1001.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:45,42:0.48:87
chr12	124333519	rs7960854	C	T	1077.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:36,45:0.56:81
chr12	124350360	rs7313897	G	C	455.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:12,18:0.60:30
chr12	124350444	rs7314963	C	T	2016.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:69,91:0.57:160
chr12	124350704	rs10773043	T	C	367.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:11,17:0.61:28
chr12	124352338	rs10846565	T	G	977.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:36,37:0.51:73
chr12	124360117	rs10846567	G	T	993.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:62,44:0.42:106
chr12	124362256	rs113178558	T	TG	676.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.044;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.96;ReadPosRankSum=1.295;SOR=0.642;set=HC	GT:AD:AF:DP	0/1:53,32:0.38:85
chr12	124363724	rs72053758	GTGTC	G	2079.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr12	124364131	rs1317312	G	C	1041.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:62,49:0.44:111
chr12	124366150	rs34756279	CT	C	1697.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.760;ClippingRankSum=0.000;DB;DP=240;ExcessHet=3.0103;FS=6.321;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.565;QD=7.55;ReadPosRankSum=0.955;SOR=0.383;set=HC	GT:AD:AF:DP	0/1:90,135:0.60:225
chr12	124799387	rs904647	G	A	792.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:17,32:0.65:49
chr12	124809879	rs77571124	T	C	46.77	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:2,3:0.60:5
chr12	124809925	.	C	CCG	127.82	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.524;ClippingRankSum=-0.000;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=25.56;ReadPosRankSum=1.282;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:1,4:0.80:5
chr12	124810174	rs10846657	G	A	365.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:23,18:0.44:41
chr12	124810968	rs1006100	C	T	4099.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr12	124815504	rs12367963	C	T	1936.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:121,100:0.45:221
chr12	124820013	rs1106317	A	G	1782.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:32,77:0.71:109
chr12	124821696	rs2229842	C	T	3883.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:105,161:0.61:266
chr12	124824721	rs143952466	C	CGCCGCTGCT	6662.73	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr12	124825447	rs1702334	A	G	915.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr12	124829234	rs1263992	C	T	7930.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr12	124829255	rs1244085	A	G	8753.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr12	124831062	rs11370026	C	CG	290.73	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:15,10:0.40:25
chr12	124832474	rs1244065	G	A	2182.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:129,109:0.46:238
chr12	124832492	rs1244064	C	G	6197.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr12	124832606	rs1244063	A	G	2213.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:99,102:0.51:201
chr12	124838619	rs117746471	C	A	2067.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:86,89:0.51:175
chr12	124838621	rs147695745	G	A	1976.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:89,90:0.50:179
chr12	124838772	rs1244082	C	G	15011.77	.	AC=2;AF=1.00;AN=2;DB;DP=558;set=Intersection	GT:AD:AF:DP	1/1:0,554:1.00:554
chr12	124838897	rs1244081	A	G	6219.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr12	124839867	rs870050	A	G	4360.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr12	124848137	rs1794956	T	C	1029.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.40;SOR=2.613;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr12	124856660	rs3741513	T	A	25405.77	.	AC=2;AF=1.00;AN=2;DB;DP=977;set=Intersection	GT:AD:AF:DP	1/1:6,958:0.99:964
chr12	124857234	rs1702329	C	G	1889.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr12	124859045	rs2695993	A	G	11374.77	.	AC=2;AF=1.00;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	1/1:0,434:1.00:434
chr12	124859135	rs11057606	G	A	3889.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr12	124873079	rs7960906	T	G	4281.77	.	AC=1;AF=0.500;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:141,171:0.55:312
chr12	124885249	rs2293514	C	T	4246.77	.	AC=1;AF=0.500;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	0/1:187,198:0.51:385
chr12	124885290	rs2293513	T	C	3122.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:123,150:0.55:273
chr12	124887058	rs35831183	G	GGCT	1576.73	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:106,83:0.44:189
chr12	124907105	rs61751356	C	T	6914.77	.	AC=1;AF=0.500;AN=2;DB;DP=692;set=Intersection	GT:AD:AF:DP	0/1:354,332:0.48:686
chr12	124922325	rs1702322	C	T	1247.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr12	124934459	rs1147284	C	G	7112.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr12	124968349	rs747443	T	C	3394.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:137,155:0.53:292
chr12	124979833	rs872224	C	G	2554.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr12	125263204	rs701104	A	C	1059.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr12	125271176	.	C	A	1233.77	.	AC=1;AF=0.500;AN=2;DP=95;set=Intersection	GT:AD:AF:DP	0/1:48,47:0.49:95
chr12	125284748	rs5888	A	G	5498.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:2,214:0.99:216
chr12	125323593	rs112622075	A	G	2957.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:104,124:0.54:228
chr12	125324570	.	C	T	2965	.	AC=2;AF=1.00;AN=2;BRF=0.65;FR=1.0000;HP=2;HapScore=1;MGOF=31;MMLQ=21;MQ=48.46;NF=164;NR=155;PP=2965;QD=20;SC=CCCAACGGCACACATGGGCCC;SbPval=0.57;Source=Platypus;TC=338;TCF=172;TCR=166;TR=319;WE=125324578;WS=125324560;set=Platypus	GT:AD:AF:DP	1/1:19,319:0.94:338
chr12	125324731	.	A	AT	828.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.969;ClippingRankSum=0.000;DP=152;ExcessHet=3.0103;FS=2.010;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.000;QD=7.47;ReadPosRankSum=-1.283;SOR=0.450;set=HC	GT:AD:AF:DP	0/1:51,60:0.54:111
chr12	125398039	rs1071862	G	C	15709.77	.	AC=2;AF=1.00;AN=2;DB;DP=578;set=Intersection	GT:AD:AF:DP	1/1:2,570:1.00:572
chr12	125400206	rs6488957	A	G	532.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr12	125432618	rs10846782	G	A	5842.77	.	AC=1;AF=0.500;AN=2;DB;DP=661;set=Intersection	GT:AD:AF:DP	0/1:357,298:0.45:655
chr12	125434434	rs4562928	C	G	889.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:36,37:0.51:73
chr12	125434580	rs4447263	C	T	5683.77	.	AC=1;AF=0.500;AN=2;DB;DP=480;set=Intersection	GT:AD:AF:DP	0/1:215,259:0.55:474
chr12	125436850	rs4375522	G	A	1013.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:47,42:0.47:89
chr12	125436897	rs4502074	A	G	2040.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:107,100:0.48:207
chr12	125437019	rs4429156	T	C	4601.77	.	AC=1;AF=0.500;AN=2;DB;DP=487;set=Intersection	GT:AD:AF:DP	0/1:248,233:0.48:481
chr12	125437160	rs74403469	G	A	2065.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:104,96:0.48:200
chr12	125437236	rs6488960	A	G	728.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:35,29:0.45:64
chr12	125438414	rs12367953	A	G	1916.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:52,90:0.63:142
chr12	125438516	rs4516060	T	C	7812.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.645;ClippingRankSum=0.000;DB;DP=419;ExcessHet=3.0103;FS=0.520;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.78;ReadPosRankSum=-1.623;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:209,207:0.50:416
chr12	125438523	rs4258464	C	T	7819.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.076;ClippingRankSum=0.000;DB;DP=438;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.98;ReadPosRankSum=-1.360;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:227,208:0.48:435
chr12	125438549	rs4606565	A	G	4488.77	.	AC=1;AF=0.500;AN=2;DB;DP=465;set=Intersection	GT:AD:AF:DP	0/1:253,209:0.45:462
chr12	125438616	rs11831506	A	C	6082.77	.	AC=1;AF=0.500;AN=2;DB;DP=505;set=Intersection	GT:AD:AF:DP	0/1:223,276:0.55:499
chr12	125441159	rs7973725	T	C	1399.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:53,40:0.43:93
chr12	125441182	rs12298675	A	G	1727.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;MQ=59.97;set=Intersection	GT:AD:AF:DP	0/1:85,60:0.41:145
chr12	125441347	rs12300199	T	C	4071.77	.	AC=1;AF=0.500;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	0/1:176,195:0.53:371
chr12	125441359	rs10773127	T	C	9492.77	.	AC=2;AF=1.00;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	1/1:0,353:1.00:353
chr12	125441459	rs12304873	G	C	2676.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:106,114:0.52:220
chr12	125441856	rs11057932	G	A	1286.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:69,56:0.45:125
chr12	125444975	rs4765007	T	C	4503.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr12	125445096	rs4765008	C	G	660.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:22,27:0.55:49
chr12	125445124	rs73229559	G	T	303.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:15,13:0.46:28
chr12	125448960	rs4076777	C	T	3130.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:107,126:0.54:233
chr12	125449470	rs73229567	G	A	2977.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:127,139:0.52:266
chr12	125450416	rs73229568	G	T	2378.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:117,108:0.48:225
chr12	125451767	rs60252902	G	A	6583.77	.	AC=1;AF=0.500;AN=2;DB;DP=669;set=Intersection	GT:AD:AF:DP	0/1:328,330:0.50:658
chr12	125453232	rs10773130	A	G	9103.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.144;ClippingRankSum=0.000;DB;DP=307;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=30.25;ReadPosRankSum=0.130;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:2,299:0.99:301
chr12	125453235	rs11057940	C	A	8523.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.054;ClippingRankSum=0.000;DB;DP=305;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=28.13;ReadPosRankSum=-0.547;SOR=1.037;set=HC	GT:AD:AF:DP	1/1:2,301:0.99:303
chr12	125456004	rs4542508	C	A	3997.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr12	125456048	rs73229579	A	T	1237.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:47,62:0.57:109
chr12	125456911	rs6488966	A	G	435.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:47,24:0.34:71
chr12	125457151	rs12320413	T	C	3461.77	.	AC=1;AF=0.500;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	0/1:188,174:0.48:362
chr12	125460093	rs371217725	G	A	5786.77	.	AC=1;AF=0.500;AN=2;DB;DP=566;set=Intersection	GT:AD:AF:DP	0/1:283,278:0.50:561
chr12	125462177	rs140881522	ACCAGGAGCCATGGT	A	619.73	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:39,19:0.33:58
chr12	125465023	rs4072887	C	T	435.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:32,24:0.43:56
chr12	125466987	rs11057949	C	T	735.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:32,33:0.51:65
chr12	125467158	rs11558556	C	T	1678.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:102,84:0.45:186
chr12	125467238	rs12424339	G	C	1257.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:53,54:0.50:107
chr12	125478381	.	C	CCTG	2190.73	.	AC=1;AF=0.500;AN=2;DP=155;set=Intersection	GT:AD:AF:DP	0/1:67,60:0.47:127
chr12	125509502	rs7303493	C	T	5480.77	.	AC=1;AF=0.500;AN=2;DB;DP=569;set=Intersection	GT:AD:AF:DP	0/1:290,273:0.48:563
chr12	125561151	rs11549081	A	G	1718.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:71,76:0.52:147
chr12	125562809	rs7303092	G	A	8566.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chr12	125562892	rs77481673	C	T	1166.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:70,57:0.45:127
chr12	125562966	rs4765025	T	G	1276.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr12	125587706	rs7138557	T	C	2267.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr12	125591569	rs77193533	G	A	605.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:26,26:0.50:52
chr12	125614125	rs78804268	C	T	780.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:37,32:0.46:69
chr12	125619308	rs2291248	C	T	4061.77	.	AC=1;AF=0.500;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	0/1:182,198:0.52:380
chr12	125621419	rs41473449	A	G	3633.77	.	AC=1;AF=0.500;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	0/1:267,188:0.41:455
chr12	125810958	rs551601	T	C	829.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr12	125811056	rs550677	A	G	4049.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:2,121:0.98:123
chr12	125833964	rs7971264	C	T	4267.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr12	125834095	rs1491893	C	A	13653.77	.	AC=2;AF=1.00;AN=2;DB;DP=569;set=Intersection	GT:AD:AF:DP	1/1:3,541:0.99:544
chr12	125834395	rs3803155	T	C	26383.77	.	AC=2;AF=1.00;AN=2;DB;DP=1029;set=Intersection	GT:AD:AF:DP	1/1:0,1007:1.00:1007
chr12	126003934	rs964998	T	C	5173.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr12	126068417	rs6489006	T	C	1696.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:91,77:0.46:168
chr12	126128476	rs11610291	A	G	414.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:16,17:0.52:33
chr12	126128871	rs12305906	T	C	2650.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr12	126135195	rs3803152	A	G	5060.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr12	126136863	rs3825381	C	T	163.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:14,8:0.36:22
chr12	126136998	rs147741654	G	A	1259.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:44,57:0.56:101
chr12	126137060	rs61021440	C	T	1380.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:92,65:0.41:157
chr12	126932624	rs758564	G	A	1453.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:97,73:0.43:170
chr12	126932764	rs758565	C	G	412.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:9,16:0.64:25
chr12	126947430	rs1019149	G	T	3061.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr12	127229254	rs10847207	A	G	783.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:40,36:0.47:76
chr12	127229327	rs10773323	T	A	3400.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:117,146:0.56:263
chr12	127229506	rs10847208	T	C	6767.77	.	AC=1;AF=0.500;AN=2;DB;DP=675;set=Intersection	GT:AD:AF:DP	0/1:334,333:0.50:667
chr12	128108780	rs3803151	T	C	3146.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr12	128778470	rs1709695	C	T	846.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:67,40:0.37:107
chr12	128778532	rs1683710	G	A	2174.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:159,110:0.41:269
chr12	128778575	rs1709696	G	T	2919.77	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:190,145:0.43:335
chr12	128778703	rs1683709	G	A	1792.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:133,89:0.40:222
chr12	128899673	rs11059681	A	G	9405.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:0,346:1.00:346
chr12	129028586	rs73426420	C	T	1672.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:72,80:0.53:152
chr12	129028708	rs11610490	G	C	290.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.795;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=3.056;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.54;ReadPosRankSum=-0.915;SOR=1.949;set=HC	GT:AD:AF:DP	0/1:12,8:0.40:20
chr12	129028712	rs12812251	G	C	230.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.297;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.54;ReadPosRankSum=-1.382;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:12,8:0.40:20
chr12	129181625	rs902058	A	G	922.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr12	129181701	rs902059	A	G	3303.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr12	129181810	rs885546	A	G	3480.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:154,171:0.53:325
chr12	129181834	rs902060	A	G	9205.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:0,338:1.00:338
chr12	129182009	rs191109983	T	C	636.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:34,31:0.48:65
chr12	129189556	rs902061	T	C	453.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:27,19:0.41:46
chr12	129189591	rs4533104	A	G	1270.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:28,52:0.65:80
chr12	129189702	rs12426596	C	G	1982.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:145,93:0.39:238
chr12	129189941	rs12424159	G	A	6265.77	.	AC=1;AF=0.500;AN=2;DB;DP=546;set=Intersection	GT:AD:AF:DP	0/1:256,287:0.53:543
chr12	129190021	rs11059841	A	G	14242.77	.	AC=2;AF=1.00;AN=2;DB;DP=508;set=Intersection	GT:AD:AF:DP	1/1:0,507:1.00:507
chr12	129190474	rs3812792	G	A	7687.77	.	AC=1;AF=0.500;AN=2;DB;DP=682;set=Intersection	GT:AD:AF:DP	0/1:317,354:0.53:671
chr12	129190913	rs7980709	G	A	730.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:36,31:0.46:67
chr12	129190937	.	C	T	490.77	.	AC=1;AF=0.500;AN=2;DP=50;set=Intersection	GT:AD:AF:DP	0/1:28,21:0.43:49
chr12	129278864	rs1059312	A	G	1557.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.076;ClippingRankSum=0.000;DB;DP=235;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.92;ReadPosRankSum=0.063;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:132,93:0.41:225
chr12	129283711	rs2291350	G	A	557.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:25,23:0.48:48
chr12	129293267	rs7311875	A	G	374.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:18,18:0.50:36
chr12	129293346	rs11059924	C	T	1666.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:84,76:0.47:160
chr12	129298468	rs10688448	C	CAATA	1023.73	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:20,25:0.56:45
chr12	129298564	rs73149855	G	C	1771.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:98,85:0.46:183
chr12	129298735	.	C	G	2428	.	AC=1;AF=0.500;AN=2;BRF=0.55;FR=0.5000;HP=1;HapScore=1;MGOF=26;MMLQ=21;MQ=55.95;NF=114;NR=75;PP=2428;QD=13.0305355161;SC=ACAGACCTGACCGCCGTATGA;SbPval=0.69;Source=Platypus;TC=481;TCF=276;TCR=205;TR=189;WE=129298743;WS=129298725;set=Platypus	GT:AD:AF:DP	0/1:292,189:0.39:481
chr12	129298775	.	C	CCACCGTATGATGGACCTGACCGCTGTATGATGGACCTGAG	1414.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.446;ClippingRankSum=0.000;DP=642;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.77;MQRankSum=-7.448;QD=4.12;ReadPosRankSum=-2.261;SOR=0.568;set=HC	GT:AD:AF:DP	0/1:341,2:0.01:343
chr12	129298779	.	C	CGTATGATGGACCTGACCGCT	5238.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.258;ClippingRankSum=0.000;DP=697;ExcessHet=3.0103;FS=0.947;MLEAC=1;MLEAF=0.500;MQ=58.77;MQRankSum=-0.366;QD=9.31;ReadPosRankSum=12.748;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:336,227:0.40:563
chr12	129298819	.	C	T	2962	.	AC=1;AF=0.500;AN=2;BRF=0.54;FR=0.5000;HP=1;HapScore=2;MGOF=26;MMLQ=21;NF=157;NR=150;PP=2962;QD=20;SC=ACCTGACCGCCGTATGATGGA;SbPval=0.4;Source=Platypus;TC=603;TCF=292;TCR=311;TR=307;WE=129298827;WS=129298809;set=Platypus	GT:AD:AF:DP	0/1:296,307:0.51:603
chr12	129298819	.	C	CGTATGATGGACCTGACCGCTGTATGATGGACCTGACCGCT	7425.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.084;ClippingRankSum=0.000;DP=827;ExcessHet=3.0103;FS=4.742;MLEAC=1;MLEAF=0.500;MQ=59.26;MQRankSum=-2.132;QD=10.27;ReadPosRankSum=2.895;SOR=0.918;set=HC	GT:AD:AF:DP	0/1:416,307:0.42:723
chr12	129299675	rs2306683	C	G	1967.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:86,90:0.51:176
chr12	129338293	rs10847702	A	T	315.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr12	129360367	.	CA	C	46.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.696;ClippingRankSum=0.000;DP=86;ExcessHet=3.0103;FS=4.172;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.56;ReadPosRankSum=-0.438;SOR=0.294;set=HC	GT:AD:AF:DP	0/1:66,17:0.20:83
chr12	129383717	rs66757130	GTTTC	G	796.73	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:16,21:0.57:37
chr12	129383723	rs188637203	T	A	805.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:16,21:0.57:37
chr12	129410738	rs141839609	CAAT	C	2140.73	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:3,57:0.95:60
chr12	129410789	rs12425716	G	A	2194.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:135,105:0.44:240
chr12	129411117	rs11609238	A	G	1956.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:75,75:0.50:150
chr12	129559421	rs73159540	C	T	3292.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:182,153:0.46:335
chr12	129559557	rs10773594	C	T	2622.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:167,128:0.43:295
chr12	129566284	.	A	AT	456.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.251;ClippingRankSum=0.000;DP=237;ExcessHet=3.0103;FS=3.348;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.14;ReadPosRankSum=-4.734;SOR=1.017;set=HC	GT:AD:AF:DP	0/1:153,60:0.28:213
chr12	130015535	rs71082733	G	GA	1345.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.536;ClippingRankSum=0.000;DB;DP=353;ExcessHet=3.0103;FS=2.937;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=3.285;QD=4.10;ReadPosRankSum=1.803;SOR=0.518;set=HC	GT:AD:AF:DP	0/1:205,123:0.38:328
chr12	130521184	rs611963	G	A	933.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr12	130521207	rs622000	C	T	988.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr12	130521234	rs34472041	C	CAAA	1435.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.53;QD=37.78;SOR=2.235;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr12	130521306	rs600949	G	C	4896.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr12	130647709	rs10848026	G	C	7718.77	.	AC=1;AF=0.500;AN=2;DB;DP=655;set=Intersection	GT:AD:AF:DP	0/1:299,346:0.54:645
chr12	130838987	rs2173082	C	T	1756.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:107,83:0.44:190
chr12	130839645	rs1874521	A	C	1364.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:49,57:0.54:106
chr12	130847389	rs2242363	A	G	2366.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:130,116:0.47:246
chr12	130883554	rs79117967	CT	C	258.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.920;ClippingRankSum=0.000;DB;DP=240;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.15;ReadPosRankSum=0.453;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:165,60:0.27:225
chr12	130884347	rs756186	A	G	1366.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:104,71:0.41:175
chr12	130916685	rs7966010	T	C	2288.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr12	130935710	rs2398519	C	G	8195.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr12	130935921	rs118081608	T	C	2943.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:106,140:0.57:246
chr12	130941150	rs2277361	G	C	4184.77	.	AC=1;AF=0.500;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	0/1:194,195:0.50:389
chr12	130941338	rs1356081	G	A	2731.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:118,127:0.52:245
chr12	131276448	rs4759786	G	T	8025.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr12	131280714	rs10848205	T	C	10355.77	.	AC=2;AF=1.00;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	1/1:0,366:1.00:366
chr12	131285663	rs1881060	T	C	4239.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr12	131296908	rs9668291	C	G	1360.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.17;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr12	131297348	rs4759794	T	G	727.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr12	131306314	rs17564	C	G	5801.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr12	131311629	rs112850087	G	A	839.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.295;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.50;MQRankSum=0.000;QD=28.96;ReadPosRankSum=1.990;SOR=5.353;set=HC	GT:AD:AF:DP	1/1:1,28:0.97:29
chr12	131323708	rs10848214	T	G	3477.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.95;SOR=0.754;set=HC	GT:AD:AF:DP	1/1:0,134:1.00:134
chr12	131356731	rs116897340	T	C	1899.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:76,89:0.54:165
chr12	131358552	rs7136324	C	T	57.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:16,5:0.24:21
chr12	131358701	rs59236418	A	AT	421.73	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:30,24:0.44:54
chr12	131359298	rs7958223	C	A	987.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.740;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.52;ReadPosRankSum=-0.265;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:63,53:0.46:116
chr12	131360360	rs73461299	G	T	2803.77	.	AC=1;AF=0.500;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	0/1:220,146:0.40:366
chr12	131439239	rs10848261	T	C	1073.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr12	131453378	rs7309920	T	C	4041.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr12	131466562	rs4759534	T	C	2969.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr12	131471608	rs1547577	T	C	4517.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr12	131476665	rs5801945	CAA	C,CA	1451.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.822;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=6.532;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.24;MQRankSum=0.488;QD=17.70;ReadPosRankSum=0.551;SOR=2.602;set=HC	GT:AD:AF:DP	1/2:6,60,16:0.73,0.20:82
chr12	131488566	rs10773836	C	T	2227.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.52;SOR=3.370;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr12	131488568	.	CT	C	210.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.806;ClippingRankSum=0.000;DP=66;ExcessHet=3.0103;FS=6.041;MLEAC=1;MLEAF=0.500;MQ=60.49;MQRankSum=2.452;QD=3.24;ReadPosRankSum=-1.205;SOR=0.134;set=HC	GT:AD:AF:DP	0/1:36,29:0.45:65
chr12	131498946	rs1212936	C	T	1486.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:99,72:0.42:171
chr12	131498995	rs1195923	G	A	676.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:49,29:0.37:78
chr12	131555329	rs10744491	C	A	3927.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:1,148:0.99:149
chr12	131590404	rs4759544	G	A	11486.77	.	AC=2;AF=1.00;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	1/1:0,424:1.00:424
chr12	131593506	rs11061329	G	A	2781.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr12	131620578	rs884522	C	T	6488.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.087;ClippingRankSum=0.000;DB;DP=348;ExcessHet=3.0103;FS=1.276;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.75;ReadPosRankSum=1.084;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:180,166:0.48:346
chr12	131620588	rs868158	A	G	7229.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.847;ClippingRankSum=0.000;DB;DP=398;ExcessHet=3.0103;FS=2.114;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.26;ReadPosRankSum=-2.420;SOR=0.805;set=HC	GT:AD:AF:DP	0/1:190,206:0.52:396
chr12	131620738	rs2280683	A	G	1908.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:93,89:0.49:182
chr12	131622735	rs7302341	T	C	5500.77	.	AC=1;AF=0.500;AN=2;DB;DP=615;set=Intersection	GT:AD:AF:DP	0/1:328,283:0.46:611
chr12	131622833	rs2277337	T	C	2442.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:87,116:0.57:203
chr12	131687263	rs61937058	C	T	7269.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr12	131687287	rs7486559	G	C	8813.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:1,331:1.00:332
chr12	131692116	rs11061381	T	C	2686.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.85;QD=31.24;SOR=2.414;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr12	132209932	rs138640311	ATG	A	12379.73	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr12	132237848	rs1982528	T	C	24700.77	.	AC=2;AF=1.00;AN=2;DB;DP=918;set=Intersection	GT:AD:AF:DP	1/1:0,911:1.00:911
chr12	132241229	rs7136191	A	G	1410.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr12	132269830	rs66665803	G	GA	6014.73	.	AC=2;AF=1.00;AN=2;DB;DP=265;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.49;QD=25.93;SOR=1.144;set=HC	GT:AD:AF:DP	1/1:0,232:1.00:232
chr12	132271113	rs7136643	T	C	3122.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr12	132283436	.	G	GA	126.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.281;ClippingRankSum=0.000;DP=69;ExcessHet=3.0103;FS=8.867;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.04;ReadPosRankSum=0.149;SOR=0.134;set=HC	GT:AD:AF:DP	0/1:44,18:0.29:62
chr12	132313098	.	G	GGCTGCCGCT	1368.73	.	AC=2;AF=1.00;AN=2;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.07;QD=45.62;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr12	132322812	rs143543400	C	A	3094.77	.	AC=1;AF=0.500;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	0/1:188,158:0.46:346
chr12	132323082	rs7971187	A	G	2222.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.46;SOR=0.952;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr12	132323089	rs7965611	C	G	2188.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.67;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr12	132323294	rs4964884	T	C	1897.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr12	132325239	rs6598163	G	A	33854.77	.	AC=2;AF=1.00;AN=2;DB;DP=1256;set=Intersection	GT:AD:AF:DP	1/1:1,1238:1.00:1239
chr12	132326051	rs4964929	C	T	1749.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr12	132329553	rs61942397	A	C	888.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:65,38:0.37:103
chr12	132335477	rs7975920	C	G	3966.77	.	AC=1;AF=0.500;AN=2;DB;DP=468;set=Intersection	GT:AD:AF:DP	0/1:253,211:0.45:464
chr12	132392171	rs61395612	G	C	590.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:29,25:0.46:54
chr12	132395052	rs7295593	G	C	954.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:47,41:0.47:88
chr12	132396343	rs11615995	C	T	870.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:36,39:0.52:75
chr12	132396603	rs11616018	C	T	3148.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:178,155:0.47:333
chr12	132398255	rs68126752	AC	A	701.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.676;ClippingRankSum=0.000;DB;DP=247;ExcessHet=3.0103;FS=0.532;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-2.361;QD=3.37;ReadPosRankSum=-0.423;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:135,73:0.35:208
chr12	132398256	rs4964880	C	A	1400.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.573;ClippingRankSum=0.000;DB;DP=246;ExcessHet=3.0103;FS=1.090;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=1.467;QD=6.73;ReadPosRankSum=-0.077;SOR=0.797;set=HC	GT:AD:AF:DP	0/1:122,86:0.41:208
chr12	132399065	rs12303764	T	G	3993.77	.	AC=1;AF=0.500;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	0/1:184,182:0.50:366
chr12	132400028	rs79589607	C	G	832.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:31,32:0.51:63
chr12	132400420	rs75464840	G	A	4079.77	.	AC=1;AF=0.500;AN=2;DB;DP=453;set=Intersection	GT:AD:AF:DP	0/1:245,200:0.45:445
chr12	132400814	rs116841412	C	A	3678.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:158,150:0.49:308
chr12	132401834	.	TGTGGGACGGGGGTTGGGGGGAGCTCGGAGGCC	T	910.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.831;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=2.758;MLEAC=1;MLEAF=0.500;MQ=58.06;MQRankSum=5.258;QD=32.53;ReadPosRankSum=2.800;SOR=1.863;set=HC	GT:AD:AF:DP	0/1:3,25:0.89:28
chr12	132402020	rs4964918	T	C	6359.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr12	132402044	rs55693180	C	A	2791.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:103,134:0.57:237
chr12	132403161	rs11609348	A	G	11949.77	.	AC=2;AF=1.00;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	1/1:0,438:1.00:438
chr12	132403305	.	A	ATAGGGTGTGTGGGGTG	1133.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.183;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;FS=6.399;MLEAC=1;MLEAF=0.500;MQ=66.17;MQRankSum=4.081;QD=33.35;ReadPosRankSum=2.064;SOR=2.621;set=HC	GT:AD:AF:DP	0/1:4,30:0.88:34
chr12	132404212	rs7299195	A	G	4105.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr12	132405820	rs117908448	G	A	6018.77	.	AC=1;AF=0.500;AN=2;DB;DP=523;set=Intersection	GT:AD:AF:DP	0/1:237,281:0.54:518
chr12	132405879	rs11546872	G	A	4062.77	.	AC=1;AF=0.500;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	0/1:192,188:0.49:380
chr12	132406275	rs7311029	A	C	9408.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr12	132416633	rs118123901	C	T	868.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:40,43:0.52:83
chr12	132416813	rs76655496	G	A	1193.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:47,56:0.54:103
chr12	132423893	rs116950634	T	C	1396.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:57,65:0.53:122
chr12	132427909	rs7961398	A	G	1114.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr12	132428250	rs117705819	C	T	503.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:26,22:0.46:48
chr12	132446448	rs62635809	G	A	4657.77	.	AC=1;AF=0.500;AN=2;DB;DP=489;set=Intersection	GT:AD:AF:DP	0/1:234,234:0.50:468
chr12	132447943	rs58728522	C	T	604.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:15,22:0.59:37
chr12	132464375	rs117969578	C	T	1161.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:91,58:0.39:149
chr12	132464393	rs79902211	C	T	705.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:63,34:0.35:97
chr12	132472512	rs61944564	G	C	511.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.108;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=1.072;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.03;ReadPosRankSum=0.506;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:28,23:0.45:51
chr12	132490820	rs117463303	G	A	2099.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:91,99:0.52:190
chr12	132491322	rs117739120	A	G	3074.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:169,143:0.46:312
chr12	132497538	rs143524919	CCT	C	1101.73	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:37,32:0.46:69
chr12	132498260	rs11831366	T	C	2027.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:99,98:0.50:197
chr12	132502057	rs117373277	C	T	1391.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:41,53:0.56:94
chr12	132504513	rs117527807	G	C	2074.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:62,87:0.58:149
chr12	132505556	rs7305807	A	G	2519.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:124,126:0.50:250
chr12	132508250	rs117585773	G	A	1147.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:47,54:0.53:101
chr12	132508389	rs7133119	A	G	2330.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:121,112:0.48:233
chr12	132510506	rs138949888	A	G	1176.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:55,51:0.48:106
chr12	132512261	rs35569693	T	A	499.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:25,23:0.48:48
chr12	132514490	rs7315548	C	T	3328.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:138,151:0.52:289
chr12	132527986	rs117982214	G	A	1025.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:80,53:0.40:133
chr12	132529707	rs78801584	A	G	987.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:52,48:0.48:100
chr12	132535055	rs118028070	G	A	5056.77	.	AC=1;AF=0.500;AN=2;DB;DP=455;set=Intersection	GT:AD:AF:DP	0/1:220,230:0.51:450
chr12	132537576	rs6422000	A	G	648.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:29,31:0.52:60
chr12	132537798	rs117079082	T	G	4965.77	.	AC=1;AF=0.500;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	0/1:212,234:0.52:446
chr12	132539458	rs145099527	G	C	2057.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:141,95:0.40:236
chr12	132539500	.	A	AT	1813.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.120;ClippingRankSum=0.000;DP=364;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.000;QD=5.23;ReadPosRankSum=-1.160;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:213,134:0.39:347
chr12	132547068	rs60930033	G	GGCA	2720.73	.	AC=1;AF=0.500;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	0/1:211,138:0.40:349
chr12	132547093	.	A	ACAG	2114.73	.	AC=1;AF=0.500;AN=2;DP=646;set=Intersection	GT:AD:AF:DP	0/1:255,120:0.32:375
chr12	132549362	rs56003133	G	A	4808.77	.	AC=1;AF=0.500;AN=2;DB;DP=488;set=Intersection	GT:AD:AF:DP	0/1:250,234:0.48:484
chr12	132551274	rs76665196	G	A	2638.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:96,126:0.57:222
chr12	132552130	rs113713452	T	C	84.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:10,6:0.38:16
chr12	132588463	rs138569033	A	C	420.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:28,20:0.42:48
chr12	132589430	rs148493427	G	A	374.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.817;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=2.320;MLEAC=1;MLEAF=0.500;MQ=47.28;MQRankSum=-5.807;QD=7.07;ReadPosRankSum=-0.350;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:30,23:0.43:53
chr12	132589466	rs372765176	G	A	290.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.522;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=1.550;MLEAC=1;MLEAF=0.500;MQ=46.94;MQRankSum=-3.851;QD=10.03;ReadPosRankSum=1.076;SOR=1.215;set=HC	GT:AD:AF:DP	0/1:15,14:0.48:29
chr12	132589649	rs34521142	C	T	972.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:73,43:0.37:116
chr12	132593360	rs10902497	G	A	1345.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:64,61:0.49:125
chr12	132598922	rs76993126	G	A	428.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:12,18:0.60:30
chr12	132598995	rs7136649	C	T	1482.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:78,66:0.46:144
chr12	132623660	rs75289754	C	T	1706.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:57,77:0.57:134
chr12	132624252	rs61729151	G	A	4386.77	.	AC=1;AF=0.500;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	0/1:212,201:0.49:413
chr12	132625105	rs9788169	G	A	7099.77	.	AC=1;AF=0.500;AN=2;DB;DP=653;set=Intersection	GT:AD:AF:DP	0/1:309,332:0.52:641
chr12	132625318	rs9787982	T	C	5888.77	.	AC=1;AF=0.500;AN=2;DB;DP=544;set=Intersection	GT:AD:AF:DP	0/1:272,260:0.49:532
chr12	132625643	rs57037358	C	T	911.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:34,38:0.53:72
chr12	132626425	rs60927391	G	A	2701.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:135,131:0.49:266
chr12	132626668	rs1133690	T	C	1747.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:110,82:0.43:192
chr12	132627365	rs61760237	G	A	4023.77	.	AC=1;AF=0.500;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	0/1:255,203:0.44:458
chr12	132627552	rs145508857	G	A	943.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:43,38:0.47:81
chr12	132628281	rs78871841	C	T	5418.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.030;ClippingRankSum=0.000;DB;DP=357;ExcessHet=3.0103;FS=4.091;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.31;ReadPosRankSum=1.146;SOR=0.810;set=HC	GT:AD:AF:DP	0/1:205,149:0.42:354
chr12	132628285	rs191101265	G	A	5438.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.138;ClippingRankSum=0.000;DB;DP=339;ExcessHet=3.0103;FS=3.572;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.19;ReadPosRankSum=1.159;SOR=0.834;set=HC	GT:AD:AF:DP	0/1:195,141:0.42:336
chr12	132628495	rs371187736	G	C	3348.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:138,161:0.54:299
chr12	132629625	rs116505899	C	G	942.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:47,43:0.48:90
chr12	132630074	rs149998274	C	T	1870.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:69,88:0.56:157
chr12	132630822	rs10794454	C	T	4802.77	.	AC=1;AF=0.500;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	0/1:234,226:0.49:460
chr12	132632145	rs116596143	C	T	2560.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:116,108:0.48:224
chr12	132633435	.	ACCTCGGTGAGTGCCGCCGCCTCGCTCACACCACACCCCTAATCC	A	542.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.189;ClippingRankSum=0.000;DP=241;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.82;MQRankSum=-0.747;QD=3.31;ReadPosRankSum=-1.652;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:121,43:0.26:164
chr12	132633447	.	GCCGCCGC	G	931.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.700;ClippingRankSum=0.000;DP=225;ExcessHet=3.0103;FS=3.953;MLEAC=1;MLEAF=0.500;MQ=59.81;MQRankSum=-0.452;QD=5.90;ReadPosRankSum=-6.166;SOR=1.028;set=HC	GT:AD:AF:DP	0/1:103,55:0.35:158
chr12	132633456	.	TCGCTCACACCACACCCCTAATCCCCTCGGTGAGTGCC	T	928.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.548;ClippingRankSum=0.000;DP=215;ExcessHet=3.0103;FS=3.968;MLEAC=1;MLEAF=0.500;MQ=59.72;MQRankSum=0.038;QD=5.84;ReadPosRankSum=-6.161;SOR=1.054;set=HC	GT:AD:AF:DP	0/1:104,55:0.35:159
chr12	132635521	rs7397057	T	C	3793.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:137,178:0.57:315
chr12	132635581	rs77081180	C	T	3411.77	.	AC=1;AF=0.500;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	0/1:254,177:0.41:431
chr12	132635779	rs12818246	C	T	3748.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:118,172:0.59:290
chr12	132682481	rs12308155	T	G	18815.77	.	AC=2;AF=1.00;AN=2;DB;DP=440;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.27;SOR=0.867;set=HC	GT:AD:AF:DP	1/1:0,425:1.00:425
chr12	132682484	rs12306514	A	G	18832.77	.	AC=2;AF=1.00;AN=2;DB;DP=431;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.05;SOR=0.880;set=HC	GT:AD:AF:DP	1/1:0,418:1.00:418
chr12	132683632	rs4074045	A	C	1978.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr12	132683690	rs4074046	G	A	1583.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:71,78:0.52:149
chr12	132683862	rs6598205	G	A	9809.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:0,363:1.00:363
chr12	132683961	rs6598206	T	C	2975.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr12	132685566	rs7953158	C	T	518.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:36,22:0.38:58
chr12	132685826	rs11246988	T	C	3167.77	.	AC=1;AF=0.500;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	0/1:240,167:0.41:407
chr12	132685837	rs10794457	A	G	10082.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:0,348:1.00:348
chr12	132685899	rs11246989	G	C	994.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:85,49:0.37:134
chr12	132685940	rs61329617	A	AGGCCCCATCC	950.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.423;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=2.948;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.85;ReadPosRankSum=-1.097;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:34,26:0.43:60
chr12	132685953	rs59310537	T	G	547.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:33,25:0.43:58
chr12	132685958	rs35906641	A	ACC	577.73	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:27,19:0.41:46
chr12	132688115	rs11246991	C	T	7684.77	.	AC=1;AF=0.500;AN=2;DB;DP=732;set=Intersection	GT:AD:AF:DP	0/1:366,366:0.50:732
chr12	132688137	rs7486927	A	G	6766.77	.	AC=1;AF=0.500;AN=2;DB;DP=700;set=Intersection	GT:AD:AF:DP	0/1:361,336:0.48:697
chr12	132688279	rs10902510	A	G	5257.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr12	132839265	rs28431148	A	G	779.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:34,31:0.48:65
chr12	132852957	rs28561974	C	A	11386.77	.	AC=1;AF=0.500;AN=2;DB;DP=1102;set=Intersection	GT:AD:AF:DP	0/1:552,547:0.50:1099
chr12	132862976	rs28503969	G	A	3482.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:190,165:0.46:355
chr12	132911861	rs28672358	G	C	499.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:17,24:0.59:41
chr12	132911891	rs28683048	G	A	559.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:24,26:0.52:50
chr12	132911948	rs28722154	T	C	658.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:38,35:0.48:73
chr12	132912181	.	C	T	626.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.176;ClippingRankSum=0.000;DP=74;ExcessHet=3.0103;FS=0.951;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.83;ReadPosRankSum=-0.529;SOR=0.829;set=HC	GT:AD:AF:DP	0/1:49,22:0.31:71
chr12	132912183	.	T	C	626.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.547;ClippingRankSum=0.000;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.71;ReadPosRankSum=-0.591;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:50,22:0.31:72
chr12	133031898	rs10870487	A	G	6019.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr12	133032047	.	T	TGTGTGTGCATGTTGAC,TGTGTGTGCGTGTTGAC	10714.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=331;set=Intersection	GT:AF:DP	1/2:0.49,0.51:259
chr12	133032110	rs9706362	T	C	2408.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr12	133032132	rs113386371	C	CGT	2094.73	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr12	133067343	.	A	G	1208.77	.	AC=2;AF=1.00;AN=2;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr12	133084973	rs61952075	G	A	269.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:6,10:0.62:16
chr12	133102403	rs61529021	C	T	2481.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:94,113:0.55:207
chr12	133104461	rs4883566	A	G	1819.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:137,92:0.40:229
chr12	133104735	rs4883565	T	C	4604.77	.	AC=1;AF=0.500;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	0/1:149,187:0.56:336
chr12	133124504	rs117025821	C	T	1200.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:59,54:0.48:113
chr12	133127964	rs74914049	G	A	2463.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:116,112:0.49:228
chr12	133128069	rs77800373	G	A	5756.77	.	AC=1;AF=0.500;AN=2;DB;DP=510;set=Intersection	GT:AD:AF:DP	0/1:239,264:0.52:503
chr12	133144164	rs11146939	G	A	5232.77	.	AC=1;AF=0.500;AN=2;DB;DP=495;set=Intersection	GT:AD:AF:DP	0/1:234,255:0.52:489
chr12	133146416	rs7312710	A	G	3932.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr12	133146457	rs3751316	G	A	6349.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr12	133146701	rs3751315	C	T	4481.77	.	AC=1;AF=0.500;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	0/1:176,207:0.54:383
chr12	133146732	rs3751314	G	A	3408.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:140,165:0.54:305
chr12	133147142	rs3751313	A	G	1257.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:96,69:0.42:165
chr12	133147165	rs3833800	T	TG	697.73	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:54,25:0.32:79
chr12	133147182	rs3751312	C	T	482.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:46,16:0.26:62
chr12	133149085	rs3829336	C	A	9495.77	.	AC=1;AF=0.500;AN=2;DB;DP=848;set=Intersection	GT:AD:AF:DP	0/1:396,446:0.53:842
chr12	133149168	rs117416619	C	T	8118.77	.	AC=1;AF=0.500;AN=2;DB;DP=745;set=Intersection	GT:AD:AF:DP	0/1:358,382:0.52:740
chr12	133153281	rs10870473	A	T	3274.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr12	133157835	rs140655645	ACCT	A	2209.73	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:44,55:0.56:99
chr12	133157848	rs3751308	T	C	2454.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:47,67:0.59:114
chr12	133158097	rs11146955	T	C	3377.77	.	AC=1;AF=0.500;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	0/1:197,167:0.46:364
chr12	133158632	rs3751304	C	T	1551.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:61,59:0.49:120
chr12	133158650	rs3751303	C	T	1932.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:77,74:0.49:151
chr12	133159004	rs7308900	C	G	2169.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.17;QD=36.78;SOR=5.926;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr12	133159733	rs11550079	C	T	1709.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:45,82:0.65:127
chr12	133160155	.	T	G	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.703;ClippingRankSum=-0.000;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.97;ReadPosRankSum=-2.369;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:5,3:0.38:8
chr12	133233705	rs5744889	T	C	5650.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr12	133252796	rs4077170	C	G	8206.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr12	133252947	rs5744759	T	C	1162.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr12	133253310	rs5744757	A	G	1710.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr12	133253887	rs112156123	G	A	2506.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:142,121:0.46:263
chr12	133254083	rs5744750	T	C	12138.77	.	AC=2;AF=1.00;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	1/1:0,428:1.00:428
chr12	133256904	rs5744738	C	T	2194.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr12	133263743	rs111877885	A	C	739.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr12	133263825	rs2075784	G	A	2768.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr12	133264332	rs11538534	C	T	480.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr12	133267164	rs34659814	CT	C	222.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.56;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr12	133272380	rs10781627	G	C	1522.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr12	133277983	rs7958567	T	C	2691.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr12	133281462	rs10007	G	A	6634.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr12	133287459	rs7486453	C	T	267.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr12	133287721	rs7973452	A	G	1147.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr12	133294826	rs149250932	G	GC	1234.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr12	133295161	.	G	GT	1848	.	AC=1;AF=0.500;AN=2;BRF=0.52;FR=0.5000;HP=5;HapScore=1;MGOF=22;MMLQ=28;MQ=51.33;NF=49;NR=0;PP=1848;QD=38.3469387755;SC=CTGGGTGGGGGGTCCTGGGTG;SbPval=1.0;Source=Platypus;TC=75;TCF=73;TCR=2;TR=49;WE=133295169;WS=133295151;set=Platypus	GT:AD:AF:DP	0/1:26,49:0.65:75
chr12	133295501	rs11147015	T	C	1758.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:62,79:0.56:141
chr12	133297103	rs10781631	T	C	1884.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr12	133297182	rs10870498	A	G	5050.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr12	133304146	rs10437912	C	T	6378.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.97;QD=41.97;SOR=3.228;set=HC	GT:AD:AF:DP	1/1:0,152:1.00:152
chr12	133304149	rs10437913	G	C	6160.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.97;QD=44.97;SOR=3.595;set=HC	GT:AD:AF:DP	1/1:0,137:1.00:137
chr12	133304891	rs10870499	T	C	1583.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr12	133306589	rs10781634	C	T	10340.77	.	AC=2;AF=1.00;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	1/1:2,392:0.99:394
chr12	133306920	.	CCCATCCATGACCAACTGCCGTGACCCCAGCAACAGCAACTCTTATACCCAAAACCTCCCCACT	C	3772.73	.	AC=2;AF=1.00;AN=2;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr12	133310659	rs372085055	TA	T	376.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.402;ClippingRankSum=0.000;DB;DP=264;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.616;QD=1.95;ReadPosRankSum=-0.981;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:135,58:0.30:193
chr12	133311888	rs10781636	C	G	3027.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr12	133311944	rs10747081	T	C	4946.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:2,189:0.99:191
chr12	133312191	rs10781637	T	C	952.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr12	133327470	rs7304425	A	T	1283.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr12	133331537	rs1132375	G	A	14008.77	.	AC=2;AF=1.00;AN=2;DB;DP=525;set=Intersection	GT:AD:AF:DP	1/1:0,512:1.00:512
chr12	133349620	rs3741483	C	G	1778.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:72,88:0.55:160
chr12	133349893	rs3741484	A	G	509.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.98;SOR=2.712;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr12	133353168	.	C	T	1175	.	AC=2;AF=1.00;AN=2;BRF=0.29;FR=1.0000;HP=1;HapScore=1;MGOF=13;MMLQ=28;MQ=57.36;NF=45;NR=1;PP=1175;QD=26.2993741858;SC=GCCCCTCCAGCTCCTTCCTCC;SbPval=0.63;Source=Platypus;TC=46;TCF=45;TCR=1;TR=46;WE=133353176;WS=133353166;set=Platypus	GT:AD:AF:DP	1/1:0,46:1.00:46
chr12	133353190	.	G	A	779	.	AC=1;AF=0.500;AN=2;BRF=0.34;FR=0.5000;HP=5;HapScore=2;MGOF=17;MMLQ=28;MQ=59.52;NF=37;NR=5;PP=779;QD=19.3755050606;SC=TGCTGCTCCCGCCTGTGCCCA;SbPval=0.45;Source=Platypus;TC=76;TCF=68;TCR=8;TR=42;WE=133353198;WS=133353180;set=Platypus	GT:AD:AF:DP	1/0:34,42:0.55:76
chr12	133353539	rs61951323	G	A	1733.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:75,74:0.50:149
chr12	133353682	rs61951347	G	A	3900.77	.	AC=1;AF=0.500;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	0/1:207,189:0.48:396
chr12	133357412	rs2291260	T	C	1279.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.649;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=3.179;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.41;ReadPosRankSum=-0.811;SOR=0.440;set=HC	GT:AD:AF:DP	0/1:73,63:0.46:136
chr12	133357645	rs35956026	CA	C	283.73	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:27,17:0.39:44
chr12	133358870	rs2306546	G	A	822.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:55,38:0.41:93
chr12	133360530	rs11147073	T	C	4081.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr12	133360964	rs1009320	G	A	1422.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:52,56:0.52:108
chr12	133363006	rs12823938	G	A	3769.77	.	AC=1;AF=0.500;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	0/1:171,184:0.52:355
chr12	133363212	rs144581238	GCCTCCCCCCCGGCCCCCGCA	G	12759.73	.	AC=1;AF=0.500;AN=2;DB;DP=545;set=Intersection	GT:AD:AF:DP	0/1:172,324:0.65:496
chr12	133363376	rs7976379	G	T	10236.77	.	AC=2;AF=1.00;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	1/1:1,372:1.00:373
chr12	133365497	rs968522	A	C	714.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr12	133365507	rs148112035	A	ACCCCGCCCCAGACACAGG	2445.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.14;QD=101.91;SOR=6.439;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr12	133365914	rs77794360	C	T	893.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:33,39:0.54:72
chr12	133372395	rs4758905	A	C	3692.77	.	AC=1;AF=0.500;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	0/1:219,178:0.45:397
chr12	133373375	rs2242292	C	T	1708.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:70,77:0.52:147
chr12	133383923	rs10781653	T	C	4950.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr12	133385188	rs3741488	A	T	1635.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:80,77:0.49:157
chr12	133398395	rs11147096	A	G	3075.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr12	133398406	rs77502219	G	C	307.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.131;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=3.308;MLEAC=1;MLEAF=0.500;MQ=59.40;MQRankSum=-6.539;QD=2.30;ReadPosRankSum=-0.266;SOR=1.373;set=HC	GT:AD:AF:DP	0/1:117,17:0.13:134
chr12	133398421	rs74721187	A	C	314.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.517;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=7.702;MLEAC=1;MLEAF=0.500;MQ=59.55;MQRankSum=-6.743;QD=1.79;ReadPosRankSum=1.196;SOR=1.711;set=HC	GT:AD:AF:DP	0/1:155,21:0.12:176
chr12	133398439	rs66472368	CA	C	2930.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.984;ClippingRankSum=0.000;DB;DP=315;ExcessHet=3.0103;FS=3.267;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=3.898;QD=11.45;ReadPosRankSum=0.996;SOR=1.005;set=HC	GT:AD:AF:DP	0/1:64,192:0.75:256
chr12	133398451	rs7298097	A	C	3996.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.308;ClippingRankSum=0.000;DB;DP=422;ExcessHet=3.0103;FS=3.279;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=3.163;QD=10.83;ReadPosRankSum=3.945;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:104,265:0.72:369
chr12	133417982	rs375411000	T	TAA	2251.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr12	133419418	rs2306544	G	A	702.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:38,33:0.46:71
chr12	133423866	rs10747087	G	A	1067.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr12	133428242	rs2306541	G	A	4363.77	.	AC=1;AF=0.500;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	0/1:180,214:0.54:394
chr12	133433173	rs2062163	T	C	8268.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr12	133433240	rs11147110	C	T	2053.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.952;ClippingRankSum=0.000;DB;DP=230;ExcessHet=3.0103;FS=1.022;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.97;ReadPosRankSum=2.312;SOR=0.611;set=HC	GT:AD:AF:DP	0/1:125,104:0.45:229
chr12	133433300	rs11147111	C	T	1188.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:55,57:0.51:112
chr12	133437981	rs12578891	A	C	1891.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:74,86:0.54:160
chr12	133438274	rs2306542	C	G	741.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:48,36:0.43:84
chr12	133439115	rs9943858	G	A	1333.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr12	133447195	rs12821502	G	A	2510.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:90,118:0.57:208
chr12	133447242	rs12832244	T	C	4550.77	.	AC=1;AF=0.500;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	0/1:208,224:0.52:432
chr12	133448815	rs2291254	G	A	2051.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:79,93:0.54:172
chr12	133682655	rs710945	A	G	4875.77	.	AC=1;AF=0.500;AN=2;DB;DP=476;set=Intersection	GT:AD:AF:DP	0/1:248,227:0.48:475
chr12	133683280	rs905225	A	T	3392.77	.	AC=1;AF=0.500;AN=2;DB;DP=351;MQ=60.03;set=Intersection	GT:AD:AF:DP	0/1:144,178:0.55:322
chr12	133696743	rs144074942	G	GAAC	1161.73	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:30,30:0.50:60
chr12	133696785	rs11147239	C	G	1504.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:51,64:0.56:115
chr12	133697760	rs7953400	C	T	1746.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:86,79:0.48:165
chr12	133721407	rs12310822	C	A	2221.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:129,112:0.46:241
chr12	133732512	rs11147259	A	G	2086.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:130,108:0.45:238
chr12	133732624	rs3763151	C	T	1303.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:74,61:0.45:135
chr12	133761207	rs137892024	ATTTG	A	277.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.148;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.19;MQRankSum=2.397;QD=10.29;ReadPosRankSum=-1.860;SOR=0.951;set=HC	GT:AD:AF:DP	0/1:17,10:0.37:27
chr12	133764701	rs11427950	C	CT	76.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.298;ClippingRankSum=-0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.48;ReadPosRankSum=1.067;SOR=1.828;set=HC	GT:AD:AF:DP	0/1:7,7:0.50:14
chr12	133767966	rs11147291	C	T	520.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:17,23:0.57:40
chr12	133768273	rs10870589	G	C	1124.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:53,46:0.46:99
chr12	133770306	rs7960924	C	T	276.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:7,12:0.63:19
chr12	133778684	rs7963812	G	A	372.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:24,18:0.43:42
chr12	133778796	rs7975069	C	T	1475.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:88,74:0.46:162
chr12	133787329	rs138369699	A	G	1144.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:50,58:0.54:108
chr12	133795418	rs142613020	C	G	2661.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:199,132:0.40:331
chr12	133795885	rs144454089	G	A	1147.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:42,49:0.54:91
chr12	133795960	rs36140725	A	G	1854.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:78,88:0.53:166
chr12	133796033	rs36130280	C	T	919.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:64,47:0.42:111
chr12	133797649	rs147515371	T	G	3140.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr13	19752625	rs605109	A	G	1349.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr13	19756026	rs783595	C	G	639.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr13	19775652	rs66950030	CA	C	377.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.027;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=3.226;MLEAC=1;MLEAF=0.500;MQ=53.04;MQRankSum=2.071;QD=11.80;ReadPosRankSum=0.730;SOR=2.165;set=HC	GT:AD:AF:DP	0/1:6,26:0.81:32
chr13	19775755	rs115152530	A	G	4001.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:3,152:0.98:155
chr13	19775867	rs114445450	G	A	2510.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.68;QD=41.16;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr13	19775875	rs138429293	T	C	2291.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.16;QD=46.77;SOR=4.935;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr13	19778601	rs141790008	G	A	299.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.64;QD=29.98;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr13	19782646	rs9512066	G	A	6270.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr13	19933372	rs4771142	G	A	2577.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:2,94:0.98:96
chr13	19941233	rs3002090	C	A	2862.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr13	19949111	rs71197092	TC	T	57.25	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr13	19949155	rs34247662	T	G	520.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr13	19949218	rs35633897	C	T	1795.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.01;QD=44.89;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr13	19949227	rs34936230	C	T	1795.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.28;QD=43.80;SOR=0.843;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr13	19949262	rs34280326	G	A	1069.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr13	19949287	rs34088473	G	T	1018.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr13	19961851	rs79520815	A	G	240.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:33,16:0.33:49
chr13	19961894	.	A	G	252.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.178;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=25.865;MLEAC=1;MLEAF=0.500;MQ=56.95;MQRankSum=-7.354;QD=3.61;ReadPosRankSum=-0.305;SOR=3.425;set=HC	GT:AD:AF:DP	0/1:59,11:0.16:70
chr13	19961897	.	G	A	237.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.888;ClippingRankSum=0.000;DP=75;ExcessHet=3.0103;FS=26.169;MLEAC=1;MLEAF=0.500;MQ=57.12;MQRankSum=-7.529;QD=3.26;ReadPosRankSum=-0.617;SOR=3.425;set=HC	GT:AD:AF:DP	0/1:62,11:0.15:73
chr13	19961903	.	C	T	228.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.903;ClippingRankSum=0.000;DP=79;ExcessHet=3.0103;FS=24.962;MLEAC=1;MLEAF=0.500;MQ=57.27;MQRankSum=-7.755;QD=2.97;ReadPosRankSum=-1.354;SOR=3.428;set=HC	GT:AD:AF:DP	0/1:66,11:0.14:77
chr13	19962055	rs9512903	G	A	1202.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr13	20000630	rs2497218	T	C	7971.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr13	20000702	rs4408395	G	C	3399.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr13	20004762	rs7139692	T	C	3452.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr13	20004798	rs2497068	C	T	1930.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr13	20038584	rs7339103	A	G	5682.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:2,213:0.99:215
chr13	20039289	rs2497079	A	T	2945.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr13	20039774	.	A	G	1860.77	.	AC=2;AF=1.00;AN=2;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr13	20041323	rs2497251	G	T	495.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr13	20041493	rs71092363	TA	T	668.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.969;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=3.488;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=0.667;QD=11.53;ReadPosRankSum=0.566;SOR=0.396;set=HC	GT:AD:AF:DP	0/1:9,49:0.84:58
chr13	20041563	rs2492391	C	T	682.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr13	20066994	rs78472618	T	C	1427.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.014;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=0.650;MLEAC=1;MLEAF=0.500;MQ=50.02;MQRankSum=-8.573;QD=7.98;ReadPosRankSum=-3.619;SOR=0.800;set=HC	GT:AD:AF:DP	0/1:135,44:0.25:179
chr13	20067011	rs76437836	A	C	1614.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.214;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=1.215;MLEAC=1;MLEAF=0.500;MQ=50.51;MQRankSum=-7.636;QD=7.69;ReadPosRankSum=-2.119;SOR=0.568;set=HC	GT:AD:AF:DP	0/1:153,57:0.27:210
chr13	20067081	rs76668072	A	G	1002.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:100,61:0.38:161
chr13	20067140	rs76824079	T	G	476.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.370;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.49;MQRankSum=-4.740;QD=8.22;ReadPosRankSum=-1.578;SOR=0.783;set=HC	GT:AD:AF:DP	0/1:42,16:0.28:58
chr13	20067145	rs112509877	T	C	438.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.927;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.16;MQRankSum=-4.814;QD=8.28;ReadPosRankSum=-1.682;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:39,14:0.26:53
chr13	20067148	rs77396540	G	A	444.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=1.521;MLEAC=1;MLEAF=0.500;MQ=56.85;MQRankSum=-4.574;QD=8.90;ReadPosRankSum=-1.241;SOR=1.076;set=HC	GT:AD:AF:DP	0/1:38,12:0.24:50
chr13	20233804	.	CA	C	177.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.250;ClippingRankSum=0.000;DP=217;ExcessHet=3.0103;FS=3.740;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.89;ReadPosRankSum=2.129;SOR=0.416;set=HC	GT:AD:AF:DP	0/1:153,47:0.23:200
chr13	20240743	rs9508812	T	C	1816.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr13	20247171	rs4769866	A	G	997.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr13	20247226	rs10706287	CG	C	2566.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.749;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=2.920;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=21.21;ReadPosRankSum=-0.400;SOR=0.847;set=HC	GT:AD:AF:DP	1/1:9,112:0.93:121
chr13	20247238	rs10531847	GTT	G	5211.73	.	AC=2;AF=1.00;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.24;QD=38.89;SOR=0.907;set=HC	GT:AD:AF:DP	1/1:2,132:0.99:134
chr13	20251791	rs2290810	T	C	1774.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr13	20252093	rs9508836	G	A	524.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr13	20277188	rs140475170	CA	C	188.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.204;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=2.645;MLEAC=1;MLEAF=0.500;MQ=53.46;MQRankSum=-2.128;QD=8.99;ReadPosRankSum=-1.521;SOR=2.179;set=HC	GT:AD:AF:DP	0/1:6,15:0.71:21
chr13	20277413	rs75085951	T	C	3195.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.938;ClippingRankSum=0.000;DB;DP=465;ExcessHet=3.0103;FS=6.102;MLEAC=1;MLEAF=0.500;MQ=49.43;MQRankSum=-5.441;QD=6.89;ReadPosRankSum=2.729;SOR=0.505;set=HC	GT:AD:AF:DP	0/1:281,183:0.39:464
chr13	20325625	rs2340650	C	G	4637.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr13	20356941	rs9508887	T	A	1730.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr13	20398669	rs9508907	T	C	3152.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr13	20398742	rs9508908	C	T	3129.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr13	20601004	rs7981272	T	C	626.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr13	20608354	rs11272380	T	TTTTCTTGAGGTG	1491.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr13	20633470	rs11432433	T	TA	271.52	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:3,16:0.84:19
chr13	20656138	rs11344087	CT	C	568.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.648;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.97;ReadPosRankSum=-0.818;SOR=0.334;set=HC	GT:AD:AF:DP	1/1:4,34:0.89:38
chr13	20657188	rs9509028	T	G	3449.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr13	20716411	rs11617415	C	T	3666.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:1,136:0.99:137
chr13	20716533	rs968566	G	T	2809.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr13	20978504	rs4638418	C	T	421.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr13	20978664	rs3737036	T	C	570.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr13	21006475	rs7983215	T	C	3529.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr13	21086599	rs7139733	G	A	1795.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:2,67:0.97:69
chr13	21099828	rs9315667	A	C	2270.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr13	21148408	rs4326897	G	A	785.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr13	21156999	rs9509289	G	A	1933.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr13	21157257	rs35700311	GA	G	1569.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr13	21170193	rs149283826	G	GTAAAA	249.73	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr13	21205124	rs35290473	TG	T	7170.73	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr13	21205140	rs1329519	A	T	5059.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr13	21205192	rs9509307	G	A	3118.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr13	21358061	rs17318617	A	G	2012.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr13	21361513	rs4146442	T	C	2666.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr13	21416945	rs2762995	G	A	1917.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr13	21429874	rs61737207	T	C	2430.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr13	21442945	rs9509410	G	A	545.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr13	21476997	rs7326480	A	G	990.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr13	21562482	rs10658032	C	CGGGGCG	885.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.403;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.56;MQRankSum=0.781;QD=40.26;ReadPosRankSum=0.711;SOR=0.365;set=HC	GT:AD:AF:DP	1/1:1,21:0.95:22
chr13	21562832	rs2770928	C	T	2620.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr13	21562948	rs558614	G	A	1949.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr13	21565572	.	G	A	2272.77	.	AC=2;AF=1.00;AN=2;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr13	21620085	rs7317471	T	C	7659.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr13	21729064	rs9552370	A	G	519.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:11,20:0.65:31
chr13	21729252	rs11147976	T	C	2109.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.555;ClippingRankSum=0.000;DB;DP=242;ExcessHet=3.0103;FS=1.049;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.72;ReadPosRankSum=0.781;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:161,81:0.33:242
chr13	21729267	rs11147977	G	A	1963.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.330;ClippingRankSum=0.000;DB;DP=224;ExcessHet=3.0103;FS=3.210;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.77;ReadPosRankSum=-0.297;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:150,74:0.33:224
chr13	21729289	.	T	TCAGTTTTCTTTGTTGCTGACATCTCGGATGTTCTGTCCATGTTTAAGGAACCTTTTACTGGGTGGCA	1174.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.521;ClippingRankSum=0.000;DP=194;ExcessHet=3.0103;FS=11.878;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.75;ReadPosRankSum=-2.027;SOR=1.611;set=HC	GT:AD:AF:DP	0/1:135,39:0.22:174
chr13	21729952	rs11446085	T	TA,TGG	1484.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=2.634;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=1.434;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=15.63;ReadPosRankSum=-1.064;SOR=1.267;set=HC	GT:AD:AF:DP	1/2:16,52,27:0.55,0.28:95
chr13	21729954	rs200964909	A	G	824.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.114;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=4.759;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.17;ReadPosRankSum=-0.508;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:76,25:0.25:101
chr13	21729957	.	A	T	747.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.275;ClippingRankSum=0.000;DP=101;ExcessHet=3.0103;FS=3.386;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.55;ReadPosRankSum=-0.257;SOR=1.123;set=HC	GT:AD:AF:DP	0/1:76,23:0.23:99
chr13	21729958	.	A	ATCTTCTGG	696.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.738;ClippingRankSum=0.000;DP=99;ExcessHet=3.0103;FS=3.372;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.18;ReadPosRankSum=-0.556;SOR=1.101;set=HC	GT:AD:AF:DP	0/1:74,23:0.24:97
chr13	21729960	.	A	ATTTTAGTTACTTCTGGAGGTGTAGGTGTTCTGAGCAGATTCTC	705.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.016;ClippingRankSum=0.000;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.67;ReadPosRankSum=-2.378;SOR=0.786;set=HC	GT:AD:AF:DP	0/1:72,20:0.22:92
chr13	21729962	.	A	T	594.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.793;ClippingRankSum=0.000;DP=78;ExcessHet=3.0103;FS=9.017;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.83;ReadPosRankSum=-2.643;SOR=1.449;set=HC	GT:AD:AF:DP	0/1:72,4:0.05:76
chr13	21732028	rs10700757	C	CAAA	480.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.857;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=1.999;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=20.03;ReadPosRankSum=0.889;SOR=0.352;set=HC	GT:AD:AF:DP	1/1:5,19:0.79:24
chr13	21732094	rs4770121	C	T	2985.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr13	21736133	rs4561294	C	T	897.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr13	21742311	rs61950353	C	T	2143.77	.	AC=1;AF=0.500;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	0/1:261,120:0.31:381
chr13	21746453	rs2026600	T	C	2037.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.81;SOR=1.121;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr13	21746600	rs151272242	TG	T	537.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.177;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=2.049;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.25;ReadPosRankSum=-0.971;SOR=0.952;set=HC	GT:AD:AF:DP	0/1:65,21:0.24:86
chr13	21750538	rs61950356	G	A	276.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.330;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=3.331;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.71;ReadPosRankSum=-0.275;SOR=0.373;set=HC	GT:AD:AF:DP	0/1:79,23:0.23:102
chr13	21751005	rs9550717	G	C	2421.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr13	21949267	rs3759473	T	C	1008.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr13	21951016	rs9509669	A	G	228.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.60;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr13	21952990	rs4770149	T	C	254.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr13	21974399	rs79578210	C	CT	297.74	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr13	22033122	rs57438463	G	C	6554.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:1,222:1.00:223
chr13	22096611	rs1359190	T	G	486.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr13	22096843	rs1200028	T	C	561.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr13	22140911	rs66467009	TA	T	86.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.135;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=3.751;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.747;QD=1.03;ReadPosRankSum=0.201;SOR=0.496;set=HC	GT:AD:AF:DP	0/1:65,19:0.23:84
chr13	22178308	rs2761924	G	A	339.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr13	22255167	rs3818460	C	T	1337.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr13	22255301	rs2274296	C	T	3367.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr13	22275394	rs9509841	A	G	7976.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:1,309:1.00:310
chr13	22275583	rs9509842	G	A	9906.77	.	AC=2;AF=1.00;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	1/1:0,361:1.00:361
chr13	23238308	rs56308927	CT	C	275.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.591;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=5.740;MLEAC=1;MLEAF=0.500;MQ=60.36;MQRankSum=0.996;QD=10.61;ReadPosRankSum=0.066;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:4,22:0.85:26
chr13	23251016	rs35856253	CT	C	713.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr13	23253313	rs9506904	T	C	5397.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr13	23279254	rs314874	G	A	4850.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr13	23279279	rs314873	T	C	6035.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr13	23894744	rs1536725	T	G	3166.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.90;SOR=1.576;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr13	23894746	rs1536726	T	G	3256.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.87;SOR=1.451;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr13	23894748	rs1536727	T	G	3346.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.85;SOR=1.340;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr13	23894750	rs1536728	T	G	3364.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.86;SOR=1.240;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr13	23894752	rs1536729	T	G	3364.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.951;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=43.14;ReadPosRankSum=2.287;SOR=0.431;set=HC	GT:AD:AF:DP	1/1:1,77:0.99:78
chr13	23898454	rs9510700	C	T	2218.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr13	23898509	rs1800353	T	C	3038.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr13	23898664	rs1800354	A	G	1329.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr13	23907677	rs2737701	C	T	4077.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr13	23908034	rs2737700	A	G	7818.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr13	23949252	rs3751368	G	A	6984.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr13	24234369	rs3751366	G	T	681.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.45;SOR=1.911;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr13	24234375	rs3751365	A	T	748.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.60;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr13	24234517	rs3751364	A	G	3738.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr13	24242801	rs7329483	A	G	1753.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr13	24243200	rs3751363	T	C	2046.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr13	24410278	rs7982516	G	A	4662.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr13	24411772	rs7333040	T	C	3471.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr13	24436230	rs1886972	C	T	226.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr13	24449166	rs10595689	AACAC	A	368.74	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr13	24465743	rs3864971	A	G	11474.77	.	AC=2;AF=1.00;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	1/1:0,425:1.00:425
chr13	24823928	rs80073311	T	C	4961.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:2,175:0.99:177
chr13	24825754	rs17080537	C	T	855.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr13	24845130	rs376881335	CCT	C	209.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.604;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=1.213;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.08;ReadPosRankSum=-1.803;SOR=0.875;set=HC	GT:AD:AF:DP	0/1:56,12:0.18:68
chr13	24845159	.	ACT	A	52.73	.	AC=1;AF=0.500;AN=2;DP=55;set=Intersection	GT:AD:AF:DP	0/1:36,6:0.14:42
chr13	24860240	rs9507300	A	G	454.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr13	24868752	rs34017703	TA	T	3365.73	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr13	24869025	rs7993660	A	G	1513.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr13	24869048	rs9553233	T	C	962.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr13	24876752	rs33990382	T	C	4385.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr13	24877151	rs9580929	A	G	1469.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr13	24877179	rs9578699	G	A	1190.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr13	24877308	rs9578700	A	G	3272.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr13	24877442	rs9580930	G	A	6749.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.41;SOR=1.091;set=HC	GT:AD:AF:DP	1/1:0,152:1.00:152
chr13	24877445	rs11149059	T	C	6716.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.78;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,150:1.00:150
chr13	24877550	rs9580931	G	C	576.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr13	24890337	rs9511193	C	G	489.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.09;QD=40.81;SOR=2.670;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr13	24890339	rs9511194	A	G	489.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.04;QD=48.98;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr13	24890354	rs28661531	C	A	407.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.21;QD=37.07;SOR=2.494;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr13	24890385	rs9511196	A	G	424.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr13	24892841	rs9580939	G	C	3921.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:2,137:0.99:139
chr13	24895240	rs200205073	G	A	168.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.28;QD=28.14;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr13	24895559	rs3751357	A	G	5202.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=4.251;MLEAC=2;MLEAF=1.000;MQ=45.54;MQRankSum=-2.536;QD=30.25;ReadPosRankSum=2.467;SOR=2.726;set=HC	GT:AD:AF:DP	1/1:2,170:0.99:172
chr13	24895684	rs2862239	A	G	14354.77	.	AC=2;AF=1.00;AN=2;DB;DP=526;set=Intersection	GT:AD:AF:DP	1/1:0,523:1.00:523
chr13	25000617	rs7571	C	G	1827.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr13	25005720	rs7996670	C	G	379.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr13	25008588	rs1372085	A	G	1318.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr13	25008630	rs1822135	A	G	2123.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr13	25008903	rs9318536	G	T	762.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.66;QD=28.25;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr13	25009099	rs9511259	A	C	1619.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr13	25009297	rs1050112	G	T	3251.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr13	25009441	rs13428	C	G	946.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:1,34:0.97:35
chr13	25009485	rs1050110	C	G	1001.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.893;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.69;ReadPosRankSum=0.401;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:2,37:0.95:39
chr13	25015967	rs61614647	C	T	1374.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr13	25016008	rs59195808	C	T	1675.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr13	25016092	rs55888616	C	T	1419.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr13	25016142	rs56259964	T	C	747.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr13	25016163	rs56092924	C	T	431.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.74;QD=26.99;SOR=2.049;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr13	25016202	rs57197471	T	C	66.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.87;QD=22.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr13	25016585	rs3816226	G	A	544.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr13	25016598	rs3816225	A	G	620.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr13	25016620	rs3816224	C	A	997.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:1,38:0.97:39
chr13	25016632	rs3816223	T	C	1307.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:1,46:0.98:47
chr13	25016677	rs3816222	T	C	3416.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.822;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=42.71;ReadPosRankSum=-0.285;SOR=1.108;set=HC	GT:AD:AF:DP	1/1:2,78:0.97:80
chr13	25016687	rs4770683	C	T	3672.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.083;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.92;MQRankSum=0.000;QD=40.36;ReadPosRankSum=-1.000;SOR=1.080;set=HC	GT:AD:AF:DP	1/1:2,89:0.98:91
chr13	25016853	rs41288260	C	T	222.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.252;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=7.336;MLEAC=1;MLEAF=0.500;MQ=59.54;MQRankSum=-3.541;QD=2.62;ReadPosRankSum=3.329;SOR=0.203;set=HC	GT:AD:AF:DP	0/1:64,21:0.25:85
chr13	25016870	rs3816221	C	A	1838.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr13	25016924	rs112553634	C	T	146.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:10,8:0.44:18
chr13	25016940	rs113302724	C	T	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.362;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.03;MQRankSum=-2.838;QD=2.81;ReadPosRankSum=-0.295;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:9,3:0.25:12
chr13	25020757	rs9511273	T	C	1276.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr13	25020782	rs9318553	C	G	1519.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr13	25020863	rs9318554	G	A	1577.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr13	25020910	rs9507346	G	A	1056.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr13	25021144	rs78060735	GTCT	G	3636.73	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr13	25021200	rs9318558	A	C	3076.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.53;QD=28.23;SOR=1.049;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr13	25021200	.	AG	CA,CG	1945	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.42;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=36;MMLQ=28;MQ=49.25;NF=10,54;NR=1,38;PP=227,1945;QD=25.4970795329;SC=TCGATCATTGAGAAACAAGGA;SbPval=1.0;Source=Platypus;TC=93;TCF=54;TCR=39;TR=11,92;WE=25021219;WS=25021190;set=Platypus	GT:AF:DP	0/1:0.12:93
chr13	25021211	rs7333856	C	T	2447.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:18,107:0.86:125
chr13	25021245	rs7334587	A	G	1977.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:32,87:0.73:119
chr13	25021263	rs77269056	T	C	496.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.674;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=5.223;MLEAC=1;MLEAF=0.500;MQ=55.81;MQRankSum=-2.037;QD=4.52;ReadPosRankSum=2.516;SOR=0.460;set=HC	GT:AD:AF:DP	0/1:77,33:0.30:110
chr13	25021323	rs73172125	A	G	626.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:42,35:0.45:77
chr13	25027744	rs4770684	A	G	9396.77	.	AC=2;AF=1.00;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	1/1:0,358:1.00:358
chr13	25029083	rs3818938	G	A	558.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr13	25029218	rs2275660	C	T	3411.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr13	25059023	rs4769362	C	T	728.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr13	25073399	rs34014909	G	GT	125.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.567;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=2.214;QD=2.29;ReadPosRankSum=0.117;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:40,15:0.27:55
chr13	25280753	rs2289905	C	T	578.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr13	25338586	rs9578783	A	G	356.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr13	25355965	rs5802305	GT	G	603.90	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.708;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=1.602;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.08;ReadPosRankSum=-2.504;SOR=1.132;set=HC	GT:AD:AF:DP	0/1:7,43:0.86:50
chr13	25363776	rs6490979	C	T	576.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr13	25368481	.	CTGA	C	58.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.521;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;FS=2.404;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.37;ReadPosRankSum=-0.303;SOR=0.140;set=HC	GT:AD:AF:DP	0/1:38,5:0.12:43
chr13	25370255	rs1446294	A	G	1191.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr13	25378476	rs9511451	A	G	1644.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.55;SOR=0.723;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr13	25399752	rs2121253	A	G	1330.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr13	25404743	rs4769382	T	C	792.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr13	25418996	rs9511472	T	G	2926.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr13	25419176	rs6490984	A	G	1655.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr13	25424369	rs9511476	A	G	417.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr13	25440318	rs9507425	G	A	1604.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.31;SOR=0.725;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr13	25440496	rs9511482	T	C	191.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr13	25442631	rs113369387	A	G	661.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.520;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=67.23;MQRankSum=5.005;QD=26.47;ReadPosRankSum=2.273;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:2,23:0.92:25
chr13	25444934	rs2305368	C	T	365.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr13	25448120	rs8001764	G	A	578.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr13	25448423	rs58383812	CT	C	143.75	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr13	25451097	rs9553460	G	A	2368.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr13	25457207	rs9318911	T	C	966.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr13	25458650	rs1530876	G	A	2449.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr13	25459713	rs34888101	G	GTT	2918.73	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr13	25460428	rs9511502	A	G	5796.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr13	25466774	rs9318917	T	C	1578.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr13	25467020	rs375905817	AAAC	A	767.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.391;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=2.838;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=1.384;QD=7.68;ReadPosRankSum=-0.578;SOR=0.453;set=HC	GT:AD:AF:DP	0/1:35,65:0.65:100
chr13	25479541	rs17402892	A	C	5663.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:1,208:1.00:209
chr13	25486911	rs9511510	G	T	5824.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:3,222:0.99:225
chr13	25670767	rs79159999	A	G	222.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.617;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=9.638;MLEAC=1;MLEAF=0.500;MQ=59.09;MQRankSum=-8.907;QD=1.59;ReadPosRankSum=-3.086;SOR=1.382;set=HC	GT:AD:AF:DP	0/1:125,15:0.11:140
chr13	25670776	rs78432860	C	T	470.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.674;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=6.560;MLEAC=1;MLEAF=0.500;MQ=58.98;MQRankSum=-8.218;QD=3.22;ReadPosRankSum=-1.429;SOR=1.079;set=HC	GT:AD:AF:DP	0/1:128,18:0.12:146
chr13	25670777	rs76472384	A	G	467.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.289;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=4.499;MLEAC=1;MLEAF=0.500;MQ=58.99;MQRankSum=-7.576;QD=3.16;ReadPosRankSum=-2.163;SOR=0.876;set=HC	GT:AD:AF:DP	0/1:127,21:0.14:148
chr13	25670780	rs79494472	C	G	476.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.711;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=4.465;MLEAC=1;MLEAF=0.500;MQ=59.02;MQRankSum=-7.510;QD=3.12;ReadPosRankSum=-1.274;SOR=1.002;set=HC	GT:AD:AF:DP	0/1:131,22:0.14:153
chr13	25670797	rs75760907	C	G	723.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.532;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=5.383;MLEAC=1;MLEAF=0.500;MQ=58.93;MQRankSum=-6.572;QD=4.83;ReadPosRankSum=0.812;SOR=1.279;set=HC	GT:AD:AF:DP	0/1:123,27:0.18:150
chr13	25670801	.	T	TG	698.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.185;ClippingRankSum=0.000;DP=157;ExcessHet=3.0103;FS=5.344;MLEAC=1;MLEAF=0.500;MQ=58.95;MQRankSum=-6.649;QD=4.57;ReadPosRankSum=1.952;SOR=1.257;set=HC	GT:AD:AF:DP	0/1:126,27:0.18:153
chr13	25670803	rs76858651	A	G	710.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.058;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=5.332;MLEAC=1;MLEAF=0.500;MQ=58.98;MQRankSum=-6.749;QD=4.53;ReadPosRankSum=2.404;SOR=1.259;set=HC	GT:AD:AF:DP	0/1:130,27:0.17:157
chr13	25670813	rs3002212	C	T	862.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.627;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=6.210;MLEAC=1;MLEAF=0.500;MQ=58.84;MQRankSum=-6.378;QD=5.39;ReadPosRankSum=1.742;SOR=1.284;set=HC	GT:AD:AF:DP	0/1:127,33:0.21:160
chr13	25670851	rs75475407	A	G	2155.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:144,64:0.31:208
chr13	25670868	rs200859889	G	A	2545.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.003;ClippingRankSum=0.000;DB;DP=246;ExcessHet=3.0103;FS=4.882;MLEAC=1;MLEAF=0.500;MQ=57.67;MQRankSum=-10.609;QD=10.52;ReadPosRankSum=0.312;SOR=1.019;set=HC	GT:AD:AF:DP	0/1:169,73:0.30:242
chr13	25670873	rs77142265	A	G	2607.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.772;ClippingRankSum=0.000;DB;DP=259;ExcessHet=3.0103;FS=3.933;MLEAC=1;MLEAF=0.500;MQ=57.82;MQRankSum=-11.010;QD=10.23;ReadPosRankSum=0.711;SOR=0.991;set=HC	GT:AD:AF:DP	0/1:181,74:0.29:255
chr13	25670877	rs112107735	G	A	2523.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.398;ClippingRankSum=0.000;DB;DP=263;ExcessHet=3.0103;FS=1.674;MLEAC=1;MLEAF=0.500;MQ=57.99;MQRankSum=-10.804;QD=9.74;ReadPosRankSum=0.715;SOR=0.814;set=HC	GT:AD:AF:DP	0/1:185,74:0.29:259
chr13	25670907	rs76264750	C	A	2163.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:193,68:0.26:261
chr13	25670919	rs76861216	A	G	2202.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:195,69:0.26:264
chr13	25670953	rs74040928	G	A	2241.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.846;ClippingRankSum=0.000;DB;DP=261;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.10;MQRankSum=-12.495;QD=8.62;ReadPosRankSum=0.530;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:191,69:0.27:260
chr13	25670955	rs79397892	C	T	2271.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.614;ClippingRankSum=0.000;DB;DP=262;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.13;MQRankSum=-12.449;QD=8.70;ReadPosRankSum=1.165;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:194,67:0.26:261
chr13	25670978	.	C	T	2347.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.880;ClippingRankSum=0.000;DP=266;ExcessHet=3.0103;FS=1.080;MLEAC=1;MLEAF=0.500;MQ=58.31;MQRankSum=-11.825;QD=8.86;ReadPosRankSum=0.788;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:196,69:0.26:265
chr13	25670981	rs77476965	G	C	2320.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.287;ClippingRankSum=0.000;DB;DP=260;ExcessHet=3.0103;FS=1.071;MLEAC=1;MLEAF=0.500;MQ=58.27;MQRankSum=-11.551;QD=8.96;ReadPosRankSum=0.002;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:189,70:0.27:259
chr13	25670984	rs11619791	C	T	2368.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.366;ClippingRankSum=0.000;DB;DP=257;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.45;MQRankSum=-11.318;QD=9.25;ReadPosRankSum=0.393;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:189,67:0.26:256
chr13	25670988	rs74564616	T	G	2332.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.442;ClippingRankSum=0.000;DB;DP=253;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.63;MQRankSum=-10.596;QD=9.26;ReadPosRankSum=-0.169;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:184,68:0.27:252
chr13	25671008	rs76447065	C	T	2547.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.866;ClippingRankSum=0.000;DB;DP=262;ExcessHet=3.0103;FS=3.097;MLEAC=1;MLEAF=0.500;MQ=59.08;MQRankSum=-9.278;QD=9.80;ReadPosRankSum=-0.923;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:187,73:0.28:260
chr13	25671015	rs75314628	A	G	2334.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.484;ClippingRankSum=0.000;DB;DP=246;ExcessHet=3.0103;FS=3.243;MLEAC=1;MLEAF=0.500;MQ=59.33;MQRankSum=-7.941;QD=9.61;ReadPosRankSum=-0.836;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:176,67:0.28:243
chr13	25671027	rs78826513	A	G	2166.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.171;ClippingRankSum=0.000;DB;DP=247;ExcessHet=3.0103;FS=0.535;MLEAC=1;MLEAF=0.500;MQ=59.47;MQRankSum=-7.428;QD=8.92;ReadPosRankSum=0.484;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:180,63:0.26:243
chr13	25671062	rs78534836	A	G	1770.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.267;ClippingRankSum=0.000;DB;DP=289;ExcessHet=3.0103;FS=5.169;MLEAC=1;MLEAF=0.500;MQ=59.74;MQRankSum=-7.315;QD=6.17;ReadPosRankSum=2.447;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:229,58:0.20:287
chr13	25671080	rs76241879	A	G	2008.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.937;ClippingRankSum=0.000;DB;DP=304;ExcessHet=3.0103;FS=3.999;MLEAC=1;MLEAF=0.500;MQ=59.47;MQRankSum=-8.937;QD=6.61;ReadPosRankSum=0.271;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:240,64:0.21:304
chr13	25671089	rs75281454	G	T	1981.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.738;ClippingRankSum=0.000;DB;DP=310;ExcessHet=3.0103;FS=2.407;MLEAC=1;MLEAF=0.500;MQ=59.52;MQRankSum=-8.550;QD=6.39;ReadPosRankSum=-0.728;SOR=0.642;set=HC	GT:AD:AF:DP	0/1:246,64:0.21:310
chr13	25671097	rs140090397	A	AT	1993.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.650;ClippingRankSum=0.000;DB;DP=320;ExcessHet=3.0103;FS=2.386;MLEAC=1;MLEAF=0.500;MQ=59.53;MQRankSum=-8.189;QD=6.23;ReadPosRankSum=-1.391;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:256,64:0.20:320
chr13	25671122	rs79072440	C	T	1911.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.620;ClippingRankSum=0.000;DB;DP=358;ExcessHet=3.0103;FS=1.049;MLEAC=1;MLEAF=0.500;MQ=59.62;MQRankSum=-8.591;QD=5.34;ReadPosRankSum=-1.926;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:292,66:0.18:358
chr13	25671143	rs78671990	A	G	2179.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.974;ClippingRankSum=0.000;DB;DP=396;ExcessHet=3.0103;FS=2.849;MLEAC=1;MLEAF=0.500;MQ=59.51;MQRankSum=-12.795;QD=5.50;ReadPosRankSum=-1.386;SOR=0.873;set=HC	GT:AD:AF:DP	0/1:323,73:0.18:396
chr13	25671149	rs368285293	ACGG	A	1815.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.839;ClippingRankSum=0.000;DB;DP=405;ExcessHet=3.0103;FS=1.613;MLEAC=1;MLEAF=0.500;MQ=59.52;MQRankSum=-13.434;QD=4.54;ReadPosRankSum=0.245;SOR=0.822;set=HC	GT:AD:AF:DP	0/1:332,68:0.17:400
chr13	25671154	rs371971190	AGACGGAACT	A	1839.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.655;ClippingRankSum=0.000;DB;DP=415;ExcessHet=3.0103;FS=1.522;MLEAC=1;MLEAF=0.500;MQ=59.54;MQRankSum=-13.576;QD=4.44;ReadPosRankSum=0.266;SOR=0.862;set=HC	GT:AD:AF:DP	0/1:345,69:0.17:414
chr13	25671168	rs78552667	C	T	1890.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.639;ClippingRankSum=0.000;DB;DP=400;ExcessHet=3.0103;FS=3.712;MLEAC=1;MLEAF=0.500;MQ=59.52;MQRankSum=-13.629;QD=4.74;ReadPosRankSum=0.826;SOR=0.939;set=HC	GT:AD:AF:DP	0/1:331,68:0.17:399
chr13	25671172	rs79593984	C	A	2148.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.075;ClippingRankSum=0.000;DB;DP=406;ExcessHet=3.0103;FS=2.421;MLEAC=1;MLEAF=0.500;MQ=59.50;MQRankSum=-13.685;QD=5.31;ReadPosRankSum=0.633;SOR=0.944;set=HC	GT:AD:AF:DP	0/1:333,72:0.18:405
chr13	25671195	rs201411821	A	G	2508.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.918;ClippingRankSum=0.000;DB;DP=410;ExcessHet=3.0103;FS=0.656;MLEAC=1;MLEAF=0.500;MQ=59.11;MQRankSum=-15.117;QD=6.13;ReadPosRankSum=2.309;SOR=0.845;set=HC	GT:AD:AF:DP	0/1:325,84:0.21:409
chr13	25671200	rs76111404	C	T	2640.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.586;ClippingRankSum=0.000;DB;DP=402;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.08;MQRankSum=-15.112;QD=6.59;ReadPosRankSum=2.812;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:317,84:0.21:401
chr13	25671206	rs76614854	A	G	2889.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.190;ClippingRankSum=0.000;DB;DP=398;ExcessHet=3.0103;FS=0.436;MLEAC=1;MLEAF=0.500;MQ=59.02;MQRankSum=-14.685;QD=7.28;ReadPosRankSum=2.247;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:307,90:0.23:397
chr13	25671210	rs80062522	C	T	2814.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.523;ClippingRankSum=0.000;DB;DP=401;ExcessHet=3.0103;FS=0.914;MLEAC=1;MLEAF=0.500;MQ=59.03;MQRankSum=-14.855;QD=7.04;ReadPosRankSum=2.839;SOR=0.759;set=HC	GT:AD:AF:DP	0/1:311,89:0.22:400
chr13	25671214	rs201081849	T	G	2845.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.636;ClippingRankSum=0.000;DB;DP=409;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.09;MQRankSum=-14.300;QD=6.97;ReadPosRankSum=2.664;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:315,93:0.23:408
chr13	25671271	rs79246694	A	G	4620.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.750;ClippingRankSum=0.000;DB;DP=497;ExcessHet=3.0103;FS=2.759;MLEAC=1;MLEAF=0.500;MQ=58.72;MQRankSum=-14.496;QD=9.51;ReadPosRankSum=0.113;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:350,136:0.28:486
chr13	25671272	rs376589131	AG	A	4919.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.681;ClippingRankSum=0.000;DB;DP=499;ExcessHet=3.0103;FS=2.759;MLEAC=1;MLEAF=0.500;MQ=58.72;MQRankSum=-14.534;QD=10.08;ReadPosRankSum=0.146;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:352,136:0.28:488
chr13	25671274	rs76994938	C	T	2018.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.541;ClippingRankSum=0.000;DB;DP=502;ExcessHet=3.0103;FS=1.988;MLEAC=1;MLEAF=0.500;MQ=58.73;MQRankSum=-14.807;QD=4.10;ReadPosRankSum=-0.352;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:357,135:0.27:492
chr13	25671292	rs80261016	C	T	4841.77	.	AC=1;AF=0.500;AN=2;DB;DP=487;set=Intersection	GT:AD:AF:DP	0/1:343,138:0.29:481
chr13	25671310	rs371130768	TTATGA	T	4127.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.960;ClippingRankSum=0.000;DB;DP=483;ExcessHet=3.0103;FS=5.903;MLEAC=1;MLEAF=0.500;MQ=57.94;MQRankSum=-11.723;QD=8.64;ReadPosRankSum=1.857;SOR=1.034;set=HC	GT:AD:AF:DP	0/1:354,124:0.26:478
chr13	25671320	.	A	G	4136.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.168;ClippingRankSum=0.000;DP=466;ExcessHet=3.0103;FS=5.797;MLEAC=1;MLEAF=0.500;MQ=57.69;MQRankSum=-10.707;QD=8.97;ReadPosRankSum=1.559;SOR=1.080;set=HC	GT:AD:AF:DP	0/1:337,124:0.27:461
chr13	25671332	rs371570689	CA	C	3905.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.600;ClippingRankSum=0.000;DB;DP=466;ExcessHet=3.0103;FS=7.136;MLEAC=1;MLEAF=0.500;MQ=57.14;MQRankSum=-8.663;QD=8.47;ReadPosRankSum=2.035;SOR=1.106;set=HC	GT:AD:AF:DP	0/1:343,118:0.26:461
chr13	25671369	rs76804900	G	T	994.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.941;ClippingRankSum=0.000;DB;DP=433;ExcessHet=3.0103;FS=11.359;MLEAC=1;MLEAF=0.500;MQ=56.88;MQRankSum=-9.077;QD=2.33;ReadPosRankSum=0.638;SOR=1.553;set=HC	GT:AD:AF:DP	0/1:341,86:0.20:427
chr13	25671398	rs77306665	C	T	358.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.553;ClippingRankSum=0.000;DB;DP=369;ExcessHet=3.0103;FS=28.471;MLEAC=1;MLEAF=0.500;MQ=56.80;MQRankSum=-10.204;QD=0.98;ReadPosRankSum=-2.128;SOR=2.170;set=HC	GT:AD:AF:DP	0/1:314,52:0.14:366
chr13	25802491	rs4770813	A	G	1688.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr13	25808286	rs9551188	A	C	1717.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr13	25823441	rs62619824	C	T	9648.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.06;SOR=0.721;set=HC	GT:AD:AF:DP	1/1:0,219:1.00:219
chr13	25823451	rs17082035	A	G	9556.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.24;SOR=0.712;set=HC	GT:AD:AF:DP	1/1:0,216:1.00:216
chr13	25828354	rs116994084	G	A	570.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr13	25832082	rs142779718	AAAAT	A	1662.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr13	25832831	rs149367120	CTAAAAT	C	1795.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr13	25836053	rs41290732	G	A	1260.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr13	25840496	rs75290152	T	A	325.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr13	25848404	rs4387458	A	C	800.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr13	25886932	rs4341628	A	G	2161.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr13	25893363	rs59567333	GTTTATA	G	1597.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr13	25901781	rs7997070	A	C	485.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr13	26104547	rs9581376	G	A	841.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr13	26107591	rs45451496	A	C	3545.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.32;SOR=1.387;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr13	26107595	rs7319869	CT	TG	3481.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.64;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr13	26107606	rs7319993	C	T	3191.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.33;SOR=1.394;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr13	26108557	rs4257084	G	A	1186.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr13	26125651	rs34018109	G	A	940.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr13	26125731	rs9581389	T	C	321.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr13	26127821	rs9740054	G	C	1403.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr13	26128128	rs7331675	CA	AG	4322.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr13	26133009	rs12862551	C	T	276.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr13	26273385	rs6491088	G	C	5203.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr13	26273538	rs2296003	C	T	1710.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr13	26279524	rs147687554	A	G	604.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr13	26411561	rs72194516	CCACA	C	302.74	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.57;QD=37.84;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr13	26434282	rs34288901	G	A	4214.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:2,161:0.99:163
chr13	26436425	rs34674796	A	G	1596.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:2,59:0.97:61
chr13	26445248	.	G	GT	59.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.142;ClippingRankSum=0.000;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.52;ReadPosRankSum=-0.117;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:93,21:0.18:114
chr13	26501227	rs1185907	C	T	3992.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr13	26535625	rs9511998	G	A	728.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr13	26586775	rs2274135	C	T	1828.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr13	26624935	rs111516934	C	T	1939.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr13	26959593	rs7327769	T	G	163.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr13	26974562	rs998692	G	A	4075.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr13	27239161	rs977351	A	G	4289.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr13	27250823	rs3764108	T	C	3304.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr13	27256728	rs9507763	C	G	6994.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:2,267:0.99:269
chr13	27664139	rs41300570	A	T	405.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr13	27829310	rs3094293	G	A	3533.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr13	27845284	rs9507866	C	A	2079.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr13	27998074	rs371044297	C	CTT	162.74	.	AC=1;AF=0.500;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.43;QD=16.27;SOR=4.407;set=HC	GT:AD:AF:DP	0/1:2,8:0.80:10
chr13	28009031	rs7323	G	C	5042.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:2,185:0.99:187
chr13	28009920	rs1218825	G	C	1949.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr13	28133956	rs373436911	TA	T	165.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.344;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=5.527;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.10;ReadPosRankSum=0.403;SOR=1.281;set=HC	GT:AD:AF:DP	0/1:112,39:0.26:151
chr13	28197436	rs7097	C	T	1084.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr13	28239940	rs11029	G	C	8616.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:2,315:0.99:317
chr13	28239970	rs14105	G	A	9378.77	.	AC=2;AF=1.00;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	1/1:2,350:0.99:352
chr13	28367061	rs1231058	A	G	8787.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,326:1.00:326
chr13	28367275	rs3742112	G	C	4383.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr13	28498323	rs9805632	G	C	409.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr13	28519354	rs2504220	A	C	2561.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr13	28537242	rs1805108	A	C	1818.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr13	28537317	rs1805107	G	A	4645.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr13	28537537	rs2504212	T	G	3024.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr13	28539185	rs2481953	T	A	3593.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr13	28541583	rs2481967	T	G	3309.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr13	28562605	rs3897926	T	G	3178.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr13	28578427	rs371173567	TTTTG	T	638.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr13	28589495	rs9579142	C	G	1494.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr13	28589509	rs9579143	C	T	1285.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr13	28589662	rs4497507	C	G	587.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.61;SOR=5.136;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr13	28602226	rs60462219	AAG	A	1139.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.86;MQRankSum=0.642;QD=26.51;ReadPosRankSum=-0.720;SOR=0.883;set=HC	GT:AD:AF:DP	1/1:3,40:0.93:43
chr13	28607916	rs2491222	T	A	1319.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr13	28607989	rs2491223	T	G	4955.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr13	28609825	rs2491227	A	G	5622.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr13	28609846	rs2491228	A	T	4140.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr13	28609991	rs2491229	T	C	1476.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.908;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=41.02;ReadPosRankSum=0.684;SOR=0.516;set=HC	GT:AD:AF:DP	1/1:1,35:0.97:36
chr13	28609997	rs2491230	T	C	1688.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.716;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=39.27;ReadPosRankSum=0.122;SOR=0.569;set=HC	GT:AD:AF:DP	1/1:1,42:0.98:43
chr13	28610183	rs2491231	A	G	3555.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr13	28611394	rs372040990	G	A	1732.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr13	28622356	rs2153000	G	A	2785.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr13	28624294	rs1933437	G	A	9069.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:4,350:0.99:354
chr13	28636084	rs7338903	G	A	3103.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr13	28644510	rs2387350	C	A	791.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr13	28647489	rs35318238	GA	G	815.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.972;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=0.998;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=1.208;QD=8.50;ReadPosRankSum=1.899;SOR=0.523;set=HC	GT:AD:AF:DP	0/1:22,74:0.77:96
chr13	28835527	rs5802469	T	TC	1485.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr13	28854692	.	A	ATT	412.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.286;ClippingRankSum=0.000;DP=91;ExcessHet=3.0103;FS=2.702;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=0.000;QD=13.31;ReadPosRankSum=0.463;SOR=2.030;set=HC	GT:AD:AF:DP	0/1:8,23:0.74:31
chr13	28885672	rs4771238	C	T	586.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.88;SOR=2.419;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr13	28886113	rs7328692	A	G	764.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr13	28893484	rs2296188	T	C	440.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr13	28942840	rs11374493	C	CT	312.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.628;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=1.257;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.45;ReadPosRankSum=0.062;SOR=0.936;set=HC	GT:AD:AF:DP	0/1:15,27:0.64:42
chr13	28970917	rs7990486	C	T	981.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr13	28980150	rs5802481	A	AG	1204.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr13	29236489	rs1340815	C	T	2136.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr13	29238576	rs3737528	T	C	1729.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr13	29275102	rs947027	T	C	771.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr13	29275129	rs705423	C	T	714.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr13	29674840	rs1536720	T	C	1308.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr13	29674855	rs1536719	A	G	1260.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr13	30014373	rs7337496	C	T	1093.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr13	30071310	rs2258198	G	T	723.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.85;SOR=0.997;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr13	30075114	rs882953	C	T	2855.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr13	30077088	rs2482096	C	T	2654.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr13	30090404	rs2989592	T	C	2654.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr13	30091516	rs2490267	T	C	4099.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr13	30091714	rs2482089	G	A	3585.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr13	30091819	rs2482090	G	C	4302.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr13	30098215	rs2776957	C	T	662.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr13	30098226	rs2776958	A	G	757.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr13	30346392	rs140223719	CTATAT	C	3428.73	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr13	30351248	rs35681461	T	TA	4370.73	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr13	30805627	rs202087	A	G	1859.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr13	30814787	rs3803272	C	T	1332.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr13	30815010	rs9550538	G	A	1150.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr13	30829757	rs11348486	CA	C	448.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.504;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.37;MQRankSum=0.605;QD=14.96;ReadPosRankSum=0.820;SOR=1.493;set=HC	GT:AD:AF:DP	1/1:2,28:0.93:30
chr13	31036681	rs1929606	A	G	4411.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr13	31195409	.	G	GT	129.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.223;ClippingRankSum=0.000;DP=116;ExcessHet=3.0103;FS=3.670;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.884;QD=1.35;ReadPosRankSum=-0.684;SOR=0.351;set=HC	GT:AD:AF:DP	0/1:76,20:0.21:96
chr13	31287979	rs147763360	G	GTA	4777.73	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:11,140:0.93:151
chr13	31309571	rs61105798	TA	T	66.76	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.34;QD=8.34;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr13	31330284	rs12721458	G	C	289.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr13	31480827	rs9531945	A	G	2906.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr13	31531009	rs12857479	G	A	3948.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:1,147:0.99:148
chr13	31531195	rs6560988	T	C	2731.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr13	31722620	rs35594388	TA	T	857.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.148;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=6.747;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=0.796;QD=10.72;ReadPosRankSum=-0.980;SOR=0.433;set=HC	GT:AD:AF:DP	0/1:13,67:0.84:80
chr13	31725260	rs11556147	A	G	2536.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr13	31725617	rs2146895	C	T	482.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr13	31725732	rs4941772	A	C	4422.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr13	31728657	rs4943165	T	C	2248.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.137;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=44.09;ReadPosRankSum=0.368;SOR=2.753;set=HC	GT:AD:AF:DP	1/1:1,50:0.98:51
chr13	31728666	rs2274018	G	A	2312.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.236;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=40.57;ReadPosRankSum=-0.064;SOR=2.985;set=HC	GT:AD:AF:DP	1/1:1,56:0.98:57
chr13	31729729	rs1047086	A	G	2819.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr13	31789169	rs35344913	CT	C	562.82	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:10,44:0.81:54
chr13	31796969	rs2147515	G	C	3648.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr13	31821256	rs9542307	C	G	5171.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:4,204:0.98:208
chr13	31821992	rs4943266	T	C	1239.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr13	31835268	rs34409451	AC	A	1743.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr13	31843598	rs1924817	A	G	1074.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr13	31848535	rs912600	G	A	1194.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr13	31850714	rs1028751	G	C	772.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr13	31850989	rs4065552	G	A	562.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr13	31891561	rs1041074	T	C	983.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr13	31891746	rs1041073	G	A	4618.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr13	31898038	rs200460848	G	T	2993.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr13	31903834	rs1060709	G	T	1278.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.63;SOR=2.985;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr13	31903841	rs112937254	A	G	1211.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.88;SOR=3.180;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr13	32340193	rs35564049	T	TA	1132.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:1,49:0.98:50
chr13	32349017	rs3848100	A	G	323.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr13	32360547	rs7325513	A	G	7523.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr13	32360691	rs140904878	T	TAA	1897.73	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:3,72:0.96:75
chr13	32676096	rs12428144	C	T	4261.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:2,161:0.99:163
chr13	32723799	rs204558	C	T	812.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr13	32731667	rs11409421	T	TA	115.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr13	32747468	rs2073998	C	T	396.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr13	32758834	rs798971	A	G	5372.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr13	32776253	rs2520704	A	T	2640.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr13	32776306	rs2762035	A	C	1114.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr13	32776318	rs2762036	T	C	1061.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr13	32776603	rs2428249	T	C	2782.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr13	32785086	rs798981	G	A	5095.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr13	32786416	rs798983	T	A	8726.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:0,329:1.00:329
chr13	32786614	rs798984	A	G	925.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr13	32813818	rs45467296	T	C	1726.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr13	32823882	rs2806630	G	A	2152.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr13	32825913	rs2806632	A	G	3663.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr13	32825941	rs2806633	C	A	4883.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr13	32828553	rs2157961	A	G	1012.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr13	32832149	rs2520686	T	C	2247.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr13	32832350	rs2806636	A	G	415.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr13	32834538	rs5802640	C	CTATCT	1135.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr13	32849359	.	C	CA	52.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.254;ClippingRankSum=-0.000;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.39;ReadPosRankSum=-0.921;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:6,6:0.50:12
chr13	32866221	rs6561216	A	G	338.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr13	32882912	rs34528008	G	GT	2344.73	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:4,111:0.97:115
chr13	32883052	rs206103	G	A	2050.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.29;SOR=1.252;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr13	32884653	rs206110	G	T	967.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr13	32884771	rs206111	T	C	4697.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.26;SOR=0.829;set=HC	GT:AD:AF:DP	1/1:0,186:1.00:186
chr13	32885654	rs445909	T	C	8430.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.61;SOR=0.839;set=HC	GT:AD:AF:DP	1/1:0,189:1.00:189
chr13	32885658	rs371193	G	A	8389.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.63;SOR=0.852;set=HC	GT:AD:AF:DP	1/1:0,188:1.00:188
chr13	32890683	.	T	C	2694.77	.	AC=2;AF=1.00;AN=2;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.98;SOR=1.906;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr13	32905265	rs206073	G	A	180.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr13	32912299	rs543304	T	C	1343.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr13	32913055	rs206075	A	G	5889.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr13	32915005	rs206076	G	C	2435.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr13	32920844	rs206080	T	C	172.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr13	32929387	rs169547	T	C	2907.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr13	33052294	rs380627	C	T	1201.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr13	33095620	rs621450	G	A	960.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr13	33101731	rs391612	T	C	1800.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr13	33315186	rs2320469	C	T	1546.78	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.932;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=39.66;ReadPosRankSum=1.434;SOR=1.432;set=HC	GT:AD:AF:DP	1/1:2,37:0.95:39
chr13	33315188	.	G	GT	33.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.020;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;FS=1.575;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.86;ReadPosRankSum=0.183;SOR=0.333;set=HC	GT:AD:AF:DP	0/1:30,9:0.23:39
chr13	33315189	rs2320470	G	T	1546.78	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=1.031;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=39.66;ReadPosRankSum=1.497;SOR=1.432;set=HC	GT:AD:AF:DP	1/1:2,37:0.95:39
chr13	33329954	rs9562937	G	T	1326.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.08;SOR=1.225;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr13	33590851	rs2772364	T	C	8609.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr13	33627825	rs9536312	C	T	4145.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.56;SOR=1.688;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr13	33627829	rs570875	T	G	4186.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.16;SOR=1.337;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr13	33627858	rs9536313	C	G	3885.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr13	33628138	rs9536314	T	G	7547.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr13	33628193	rs9527025	G	C	8975.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr13	33628239	rs9527026	G	A	10097.77	.	AC=2;AF=1.00;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	1/1:0,371:1.00:371
chr13	33629657	rs9527029	C	T	1035.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr13	33635463	rs648202	T	C	3565.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr13	33635835	rs649964	T	C	3533.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr13	33635939	rs650439	T	A	2241.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr13	33637913	rs34137141	C	CA	129.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.373;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=1.091;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.31;ReadPosRankSum=-1.297;SOR=0.971;set=HC	GT:AD:AF:DP	0/1:76,23:0.23:99
chr13	33680854	rs642899	T	G	1743.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr13	33686844	rs34128539	G	GA	2548.73	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr13	33700374	rs1980781	T	G	2578.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr13	33701347	rs2764617	C	T	796.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr13	33703656	rs495680	T	C	11403.77	.	AC=2;AF=1.00;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	1/1:0,420:1.00:420
chr13	33704065	rs3742321	T	C	6784.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:2,242:0.99:244
chr13	33739629	rs797232	G	A	746.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr13	33741559	rs797229	C	T	1678.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.52;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr13	34098232	rs1329344	A	C	1423.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:1,49:0.98:50
chr13	35618991	rs7996448	A	G	1632.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr13	35619588	rs73491592	C	A	2525.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:2,93:0.98:95
chr13	35622640	rs17051829	C	G	2113.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:1,83:0.99:84
chr13	35630082	rs74051228	C	T	609.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr13	35730195	rs41292193	A	T	1447.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr13	35735976	rs17051895	A	G	3885.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr13	35739382	rs74048925	T	C	2564.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:2,90:0.98:92
chr13	35747681	rs41292197	A	G	4743.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr13	35758287	rs17051909	C	A	2684.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr13	35806549	rs9565113	T	G	335.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.52;SOR=2.494;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr13	36049080	rs9565317	T	G	1701.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr13	36141009	rs9544667	G	A	2441.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr13	36220292	rs3818424	T	C	1356.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:1,46:0.98:47
chr13	36224051	rs200267946	TACTGGG	T	368.74	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr13	36402325	rs2296644	T	A	1711.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr13	36402475	rs2296646	G	A	595.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr13	36443324	rs7986427	G	A	1708.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:2,67:0.97:69
chr13	36521433	rs1936004	T	G	4399.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr13	36521460	rs1936003	A	G	5971.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr13	36686138	rs3748308	T	C	3346.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr13	36745029	rs1328641	C	T	2190.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr13	36747798	rs1410633	C	G	788.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr13	36788758	rs3762117	C	T	1278.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr13	36805549	rs2296532	G	A	2278.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:2,87:0.98:89
chr13	36940028	rs1041140	G	A	2807.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr13	37007040	rs4245378	A	G	313.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr13	37007491	rs71438101	A	G	1374.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr13	37007494	rs145868841	GTTGA	G	1333.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr13	37401917	rs11285105	GT	G	2808.73	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr13	37524255	rs3818380	A	C	1087.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr13	37526560	rs6563506	G	A	1151.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr13	37563791	rs2243710	C	T	901.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr13	37569200	rs2323165	A	G	1112.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr13	37581051	rs9576154	T	G	2209.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr13	37584838	rs7317750	G	A	987.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr13	37598113	rs4943441	A	G	1602.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr13	37600199	rs4941856	A	G	155.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.97;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr13	37618442	rs34587536	CA	C	189.74	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr13	37621528	rs1199983	A	G	656.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr13	37625601	rs1543738	T	C	1462.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.60;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr13	37625770	rs5802853	A	AG	734.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr13	37804353	rs1408229	A	C	3953.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr13	38154959	rs9576307	G	C	1848.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr13	38156706	rs2274082	T	G	1469.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:1,48:0.98:49
chr13	38161230	rs186000107	C	T	1500.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr13	38164445	rs1006416	G	A	1127.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr13	38166357	rs9603229	T	G	701.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr13	38237872	rs2985171	A	G	2845.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:1,98:0.99:99
chr13	38266000	rs7329237	G	T	527.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr13	38320594	rs35278654	TAA	TA,T	232.75	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=28;set=Intersection	GT:AF:DP	0/1:0.82:22
chr13	38924117	rs2231331	C	G	11133.77	.	AC=2;AF=1.00;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	1/1:0,401:1.00:401
chr13	38930783	rs2455410	G	A	146.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr13	38930838	.	CAA	C	72.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.869;ClippingRankSum=-0.000;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.20;ReadPosRankSum=1.868;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:8,6:0.43:14
chr13	38931650	rs140175582	GT	G	1302.73	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:1,65:0.98:66
chr13	38932174	.	TTGTG	T	60	.	AC=1;AF=0.500;AN=2;BRF=0.33;FR=0.5000;HP=3;HapScore=2;MGOF=12;MMLQ=23;MQ=60.0;NF=0;NR=2;PP=60;QD=33.0;SC=TCTTATAGTTTTGTGTGTGTG;SbPval=1.0;Source=Platypus;TC=6;TCF=1;TCR=5;TR=2;WE=38932185;WS=38932164;set=Platypus	GT:AD:AF:DP	1/0:4,2:0.33:6
chr13	38932545	rs11381230	G	GT	382.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr13	39262057	rs1868464	G	A	7731.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr13	39263714	rs2496423	T	C	21821.77	.	AC=2;AF=1.00;AN=2;DB;DP=813;set=Intersection	GT:AD:AF:DP	1/1:0,809:1.00:809
chr13	39338612	rs2442370	T	C	602.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr13	39430314	rs9548509	C	T	5027.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr13	39448455	rs9548518	A	G	270.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr13	39450583	rs67517056	T	TA	437.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.382;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=1.356;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.96;ReadPosRankSum=-0.708;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:24,31:0.56:55
chr13	39452235	rs1540131	T	C	1271.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr13	39452538	.	T	TGGCC	876.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.064;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=20.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=35.07;ReadPosRankSum=2.552;SOR=6.272;set=HC	GT:AD:AF:DP	0/1:3,22:0.88:25
chr13	39452934	rs9532296	C	T	6573.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr13	39546530	rs8000175	C	G	1107.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr13	39598698	rs67984592	TA	T	155.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.204;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.90;ReadPosRankSum=2.135;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:56,26:0.32:82
chr13	39603384	.	TAA	T	130.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.491;ClippingRankSum=-0.000;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.54;ReadPosRankSum=-0.707;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:8,12:0.60:20
chr13	39608335	.	T	TA	96.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.503;ClippingRankSum=0.000;DP=271;ExcessHet=3.0103;FS=0.661;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.39;ReadPosRankSum=0.193;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:208,39:0.16:247
chr13	39618366	.	TTG	T	253.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.598;ClippingRankSum=0.000;DP=143;ExcessHet=3.0103;FS=3.174;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.45;ReadPosRankSum=-2.413;SOR=0.254;set=HC	GT:AD:AF:DP	0/1:39,18:0.32:57
chr13	39622075	rs9532318	T	C	1697.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr13	39952791	rs41286955	C	T	640.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr13	40229744	rs9603589	C	T	7702.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr13	40230365	rs148177150	A	C	2356.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:1,86:0.99:87
chr13	40230921	.	T	C	2862.77	.	AC=2;AF=1.00;AN=2;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr13	40254100	rs11414752	A	AT	522.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.919;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=19.36;ReadPosRankSum=-0.695;SOR=1.136;set=HC	GT:AD:AF:DP	1/1:2,25:0.93:27
chr13	40261945	rs4129745	A	G	1266.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr13	40264066	rs9603593	T	C	240.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr13	40268685	rs9603594	T	C	125.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr13	40293288	rs5803008	AT	A	1402.73	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr13	40297472	.	C	T	1555.77	.	AC=2;AF=1.00;AN=2;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr13	40297684	rs7985075	C	T	2573.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr13	40298620	rs58666375	CT	C	219.82	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.670;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.85;ReadPosRankSum=2.300;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:6,22:0.79:28
chr13	40298805	rs9532421	C	T	380.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr13	41302147	rs9549273	C	G	266.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr13	41323397	rs13508	C	T	1087.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr13	41515286	rs1056820	T	A	9426.77	.	AC=2;AF=1.00;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	1/1:4,354:0.99:358
chr13	41517985	rs3764056	A	G	1718.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.91;SOR=0.910;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr13	41525586	rs3736953	A	G	2664.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr13	41533052	rs7799	T	C	11826.77	.	AC=2;AF=1.00;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	1/1:0,442:1.00:442
chr13	41639425	.	TA	T	106.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.462;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=3.722;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.95;ReadPosRankSum=0.935;SOR=0.184;set=HC	GT:AD:AF:DP	0/1:12,15:0.56:27
chr13	41675332	.	TA	T	47.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.631;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.51;ReadPosRankSum=0.450;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:10,9:0.47:19
chr13	41705495	rs584594	A	G	5653.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr13	41706800	rs9566703	A	G	284.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr13	41767338	rs2039134	A	G	5644.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.98;QD=44.45;SOR=0.954;set=HC	GT:AD:AF:DP	1/1:0,127:1.00:127
chr13	41767341	rs2039135	A	G	5668.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.56;QD=44.99;SOR=0.899;set=HC	GT:AD:AF:DP	1/1:0,126:1.00:126
chr13	41791440	rs2274903	T	A	1284.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr13	41797601	rs2026469	A	T	722.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr13	41807950	rs3751344	T	C	2000.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr13	41834578	rs66465270	GT	G	576.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr13	41834744	rs2297555	C	T	7326.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr13	41835076	rs3215932	T	TA	1147.73	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:3,53:0.95:56
chr13	41835089	rs1332940	T	G	1576.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr13	41837220	rs3818721	C	T	216.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr13	41893105	rs2065498	T	G	892.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr13	41902939	rs3812896	T	C	1335.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr13	41910692	rs11842833	A	G	557.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr13	41948051	rs9525478	G	C	2004.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr13	41949804	rs6560982	G	T	2191.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr13	42032572	rs7136	T	C	5445.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.513;ClippingRankSum=0.000;DB;DP=217;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.21;ReadPosRankSum=1.768;SOR=0.731;set=HC	GT:AD:AF:DP	1/1:2,214:0.99:216
chr13	42043086	rs2324791	C	G	1236.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr13	42044508	rs396963	A	G	2757.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr13	42164634	.	CT	C	134.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.293;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.81;ReadPosRankSum=-0.046;SOR=0.567;set=HC	GT:AD:AF:DP	0/1:12,16:0.57:28
chr13	42185696	rs3814782	T	C	5672.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:2,216:0.99:218
chr13	42189232	rs3862741	C	G	2773.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr13	42267148	.	CT	C	54.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.914;ClippingRankSum=0.000;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.49;ReadPosRankSum=2.843;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:12,10:0.45:22
chr13	42275473	rs7322461	A	G	929.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr13	42361743	rs112297676	T	TAC	502.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.310;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=0.000;QD=12.57;ReadPosRankSum=-0.735;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:18,22:0.55:40
chr13	42361770	.	A	ACT	359	.	AC=1;AF=0.500;AN=2;BRF=0.21;FR=0.5000;HP=2;HapScore=2;MGOF=24;MMLQ=28;MQ=60.22;NF=1;NR=22;PP=359;QD=15.7391304348;SC=ACACACACACACACTCCTTAC;SbPval=0.45;Source=Platypus;TC=39;TCF=1;TCR=38;TR=23;WE=42361778;WS=42361760;set=Platypus	GT:AD:AF:DP	0/1:16,23:0.59:39
chr13	42390740	rs78527162	G	C	3451.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr13	42390761	rs75585975	T	C	4661.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr13	42393618	rs2274812	A	G	606.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr13	42439498	rs76291279	G	A	658.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr13	42465490	rs7332372	C	T	1225.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr13	42481712	rs2003064	C	T	3714.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr13	42486399	rs2875457	C	T	680.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr13	42701717	rs605371	A	G	4540.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr13	42701739	rs670676	A	T	3371.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:1,129:0.99:130
chr13	42701803	rs957255	G	A	1247.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr13	42703682	rs3742261	T	C	2591.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr13	42748118	.	TG	CG	1169	.	AC=1;AF=0.500;AN=2;BRF=0.42;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=20;MMLQ=13;MQ=60.0;NF=12,13;NR=12,11;PP=29,1169;QD=2.65713385613;SC=TGTGTGTGTGTGCGCGTTTAT;SbPval=0.18;Source=Platypus;TC=63;TCF=40;TCR=23;TR=24,24;WE=42748126;WS=42748108;set=Platypus	GT:AD:AF:DP	0/1:39,24:0.38:63
chr13	42748118	.	TG	TGCG	1169	.	AC=1;AF=0.500;AN=2;BRF=0.42;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=20;MMLQ=13;MQ=60.0;NF=12,13;NR=12,11;PP=29,1169;QD=2.65713385613;SC=TGTGTGTGTGTGCGCGTTTAT;SbPval=0.18;Source=Platypus;TC=63;TCF=40;TCR=23;TR=24,24;WE=42748126;WS=42748108;set=Platypus	GT:AD:AF:DP	0/1:28,24:0.46:52
chr13	42748118	rs74243127	T	C,TGC	3507.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=56.58;SOR=1.234;set=HC	GT:AD:AF:DP	1/2:0,9,53:0.15,0.85:62
chr13	42748136	rs9590674	T	C	4406.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr13	42761399	rs17598471	A	G	2370.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr13	42763533	rs55656510	A	T	560.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr13	42764439	rs1170119	T	C	1192.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr13	42764564	rs7324235	C	G	5144.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:2,206:0.99:208
chr13	42773629	rs4942097	A	G	76.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr13	42780398	rs9594704	T	C	1043.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr13	42783012	rs168329	G	A	286.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr13	42794004	rs347382	G	A	3574.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr13	42882762	rs238314	A	G	833.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr13	43148565	rs2296533	T	C	1578.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr13	43155168	rs2277438	G	A	482.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr13	43155443	rs2277439	G	A	3273.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:2,126:0.98:128
chr13	43358309	.	C	CTTTTTT	175.94	.	AC=2;AF=1.00;AN=2;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.19;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr13	43360772	rs57301416	T	TA	99.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.571;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.41;MQRankSum=2.057;QD=1.96;ReadPosRankSum=-0.965;SOR=0.603;set=HC	GT:AD:AF:DP	0/1:36,15:0.29:51
chr13	43462422	rs1044856	A	T	4844.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:2,183:0.99:185
chr13	43474371	rs4942174	C	T	4018.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr13	43491778	rs61066479	G	GAA	370.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.298;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=0.668;QD=14.26;ReadPosRankSum=0.957;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:5,21:0.81:26
chr13	43491871	rs17621929	C	T	2039.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr13	43491940	rs12864209	C	T	950.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr13	43537240	rs1054813	A	G	916.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.66;SOR=4.712;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr13	43537246	rs9562444	C	T	916.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.66;SOR=4.712;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr13	43537287	rs41288321	G	A	1019.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.56;SOR=2.012;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr13	43544964	rs9567077	G	T	195.80	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr13	43566373	rs3825511	A	C	1287.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr13	43597706	rs17553284	C	T	1919.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr13	43597865	rs12015	A	G	11536.77	.	AC=2;AF=1.00;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	1/1:2,426:1.00:428
chr13	43597932	rs2281777	C	G	13189.77	.	AC=2;AF=1.00;AN=2;DB;DP=518;set=Intersection	GT:AD:AF:DP	1/1:2,510:1.00:512
chr13	43597977	rs2281778	C	G	16128.77	.	AC=2;AF=1.00;AN=2;DB;DP=372;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.83;SOR=0.974;set=HC	GT:AD:AF:DP	1/1:0,368:1.00:368
chr13	43597980	rs2281779	G	A	15968.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.76;SOR=1.058;set=HC	GT:AD:AF:DP	1/1:0,349:1.00:349
chr13	43597995	rs2281780	G	T	7728.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr13	43660044	rs141024500	C	CATT	762.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr13	43681427	rs1047775	G	A	1245.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.095;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=4.102;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.39;ReadPosRankSum=-0.831;SOR=0.814;set=HC	GT:AD:AF:DP	0/1:14,62:0.82:76
chr13	43788036	rs703206	T	G	1990.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr13	43788158	rs703207	G	A	7491.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr13	43798348	rs2289774	T	C	925.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr13	43839494	rs4306408	G	A	8048.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr13	43843569	rs41288327	G	A	7614.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:2,281:0.99:283
chr13	43843812	rs730210	A	G	1163.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr13	43872419	rs4451860	C	T	1014.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.70;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr13	43872451	rs141332734	C	CA,CAA	738.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.064;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=17.18;ReadPosRankSum=-0.378;SOR=0.693;set=HC	GT:AD:AF:DP	1/2:4,13,26:0.30,0.60:43
chr13	43930337	rs2281713	A	G	3205.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr13	43935405	rs1535580	C	T	2657.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr13	43986771	rs2296041	G	A	290.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr13	44433700	rs1562216	G	A	437.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.36;SOR=2.049;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr13	44434281	rs142300402	TAATG	T	501.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr13	44443039	rs4942252	C	T	103.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr13	44455493	rs9562519	T	A	2861.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr13	44456286	rs9567298	G	A	983.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:2,35:0.95:37
chr13	44464519	.	T	TA	349.73	.	AC=1;AF=0.500;AN=2;DP=43;set=Intersection	GT:AD:AF:DP	0/1:9,24:0.73:33
chr13	44948295	rs201663302	T	TG	1911.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.393;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=3.090;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=34.76;ReadPosRankSum=1.136;SOR=0.339;set=HC	GT:AD:AF:DP	1/1:1,54:0.98:55
chr13	44948302	rs199705926	GA	G	2076.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.885;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=44.19;ReadPosRankSum=1.699;SOR=0.223;set=HC	GT:AD:AF:DP	1/1:1,46:0.98:47
chr13	44964723	rs2281848	C	T	1206.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr13	44969907	rs1467624	G	A	6326.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr13	45010283	rs1555781	T	G	2152.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr13	45010616	rs7997320	G	A	3188.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr13	45090478	rs1336163	A	C	4435.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr13	45090580	rs1336164	C	T	754.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr13	45517486	.	A	AAC	849.86	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.701;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.61;ReadPosRankSum=1.223;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:6,30:0.83:36
chr13	45524083	rs1175384	A	C	3464.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;MQ=59.98;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr13	45539879	rs1175391	A	G	1145.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr13	45540136	rs1175392	G	A	321.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr13	45973231	.	G	GA	267.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.536;ClippingRankSum=0.000;DP=83;ExcessHet=3.0103;FS=4.541;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.298;QD=3.94;ReadPosRankSum=-0.144;SOR=0.241;set=HC	GT:AD:AF:DP	0/1:41,27:0.40:68
chr13	46108853	rs3014902	T	C	4878.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr13	46148943	rs140782618	TG	T	164.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.394;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.50;ReadPosRankSum=2.040;SOR=0.540;set=HC	GT:AD:AF:DP	0/1:52,14:0.21:66
chr13	46170609	rs3014939	C	T	14900.77	.	AC=2;AF=1.00;AN=2;DB;DP=554;set=Intersection	GT:AD:AF:DP	1/1:0,550:1.00:550
chr13	46170719	rs142875900	CCCAGATACTCTTCCTCCT	C	15589.73	.	AC=2;AF=1.00;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	1/1:0,364:1.00:364
chr13	46287153	rs9316154	A	C	915.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr13	46288145	rs7317245	A	G	3418.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr13	46541673	rs9534264	T	A	2875.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr13	46550061	rs11428563	G	GT	689.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr13	46562935	rs1134071	A	G	4429.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr13	46619026	rs962694	T	C	2121.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr13	46619316	rs3736944	T	C	885.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr13	46627677	rs1049669	T	C	2668.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr13	46629944	rs1926447	A	G	4406.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr13	46629995	rs1926446	C	A	3306.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:1,120:0.99:121
chr13	46641324	rs34583549	T	TA	995.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr13	46641481	rs7337140	T	C	7095.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:1,275:1.00:276
chr13	46656412	rs3818477	T	G	733.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr13	46656669	rs2296642	A	G	1797.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr13	46705068	rs11558762	C	A	4803.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr13	46708291	rs4941543	T	C	7322.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr13	46717246	rs2182485	T	C	879.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr13	46722703	rs10631906	C	CTTAA	983.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr13	46728771	rs4258501	T	C	773.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr13	46836201	rs2764598	A	G	485.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr13	46917428	rs41284169	C	A	2035.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr13	46917469	rs2478046	G	A	3413.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr13	46919092	rs259738	A	T	575.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr13	46919095	rs10682466	T	TTG	566.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr13	46919762	rs259735	T	G	2401.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr13	46928784	rs259697	G	A	2544.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr13	46930536	rs181977	C	A	7957.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:2,300:0.99:302
chr13	46936789	rs41284171	G	A	149.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr13	46937074	rs4941554	G	T	119.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.57;QD=23.98;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr13	46942081	rs2476664	A	G	2105.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr13	46942835	rs41284175	T	C	3623.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr13	46946157	rs1408184	C	T	6927.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr13	47256065	rs45439193	C	G	759.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr13	47260054	rs842381	T	C	4572.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr13	47261970	rs842375	T	C	2485.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr13	47273458	rs706621	G	C	3445.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr13	47279375	rs11483731	C	CT	1588.73	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:3,71:0.96:74
chr13	47279454	rs842387	A	G	3927.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr13	47279680	rs3832915	A	AT	1084.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr13	47297352	rs7319836	G	A	4125.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr13	47302934	rs3742273	T	A	3280.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr13	47308109	rs2298086	A	G	1669.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr13	47315984	rs3742274	T	C	1751.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr13	47358540	rs8192889	T	C	3058.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr13	47408902	rs58145637	A	AT	153.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.218;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=2.403;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.67;ReadPosRankSum=1.892;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:72,20:0.22:92
chr13	47470824	rs6312	C	T	4023.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:1,148:0.99:149
chr13	48563246	rs6561425	A	G	704.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr13	48571213	rs8001509	C	T	3836.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr13	48575207	rs11316376	GA	G	5072.73	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr13	48653957	rs138539860	AAC	A	5034.73	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr13	48660380	rs41287449	T	C	444.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr13	48664556	.	T	TA	305.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.098;ClippingRankSum=0.000;DP=260;ExcessHet=3.0103;FS=2.836;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.22;ReadPosRankSum=2.191;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:200,50:0.20:250
chr13	48671081	rs1571256	A	G	7356.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr13	48878271	rs2854351	T	C	545.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr13	48878292	rs2252544	G	A	465.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr13	48919358	rs198617	T	G	945.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr13	48921884	rs198616	A	G	913.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr13	48947469	rs185587	G	T	907.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr13	48953655	rs11449461	C	CA	236.70	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.615;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.10;ReadPosRankSum=1.546;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:7,19:0.73:26
chr13	48955676	rs2804086	T	A	346.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr13	49033747	rs198580	G	A	1918.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr13	49034022	.	A	AT	3000	.	AC=2;AF=1.00;AN=2;BRF=0.44;FR=1.0000;HP=2;HapScore=1;MGOF=38;MMLQ=26;MQ=59.78;NF=3;NR=102;PP=3000;QD=20;SC=TTGTTAACTGATTCTTTCTTT;SbPval=0.53;Source=Platypus;TC=111;TCF=3;TCR=108;TR=105;WE=49034030;WS=49034011;set=Platypus	GT:AD:AF:DP	1/1:6,105:0.95:111
chr13	49051012	rs3020646	C	T	5536.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr13	49107241	rs7997110	T	C	12665.77	.	AC=2;AF=1.00;AN=2;DB;DP=495;set=Intersection	GT:AD:AF:DP	1/1:0,484:1.00:484
chr13	49684436	.	CA	C	342.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.475;ClippingRankSum=0.000;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.52;ReadPosRankSum=1.500;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:91,45:0.33:136
chr13	49752915	rs1407826	A	G	610.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr13	49776080	rs9316430	A	G	3589.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:2,136:0.99:138
chr13	49840024	rs6561512	A	G	5129.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr13	49852430	rs2274149	T	G	3314.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr13	49865748	rs6561514	A	G	1928.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr13	49866869	rs3751418	G	C	1534.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr13	49885216	rs912547	A	G	3370.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr13	49934045	rs9535208	T	C	255.78	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr13	49951027	rs111664849	G	GTAGATAGATAGATAGATAGA	2338.73	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr13	49951142	rs8002829	T	C	5213.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr13	49951193	rs8002858	T	C	5168.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:2,203:0.99:205
chr13	49951310	rs8002153	G	T	1766.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr13	50007393	rs7998660	C	T	1583.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr13	50008112	rs3764091	G	A	3194.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr13	50008301	rs3764090	A	G	8863.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr13	50035151	rs721457	G	C	480.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr13	50035208	rs2077848	G	A	1238.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.81;SOR=1.067;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr13	50038080	rs12429813	G	A	621.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr13	50050620	rs7998427	A	G	2498.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr13	50080847	rs2031532	A	G	4735.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:3,180:0.98:183
chr13	50092127	rs66480424	TACTC	T	1897.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr13	50095127	rs3765526	A	G	1228.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr13	50096127	rs2274277	C	G	334.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr13	50098407	rs144805189	TAAAAC	T	593.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.41;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr13	50100090	rs7322908	T	A	934.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr13	50100320	rs7321952	A	G	701.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.19;QD=38.99;SOR=1.493;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr13	50100389	rs7323493	T	C	1026.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr13	50100627	rs10546233	GTT	G	1991.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr13	50100637	rs371713260	ATATT	A	1706.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr13	50100647	rs61960012	C	T	1714.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr13	50100667	rs6561533	G	A	787.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr13	50102810	rs1046295	G	A	7834.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr13	50108252	rs7317982	T	C	4192.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:2,156:0.99:158
chr13	50115669	rs1536195	C	T	508.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr13	50121211	rs1570883	G	A	819.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr13	50121311	rs3039280	C	CA,CAA	1662.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.629;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=1.327;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.10;MQRankSum=0.000;QD=18.27;ReadPosRankSum=1.084;SOR=0.999;set=HC	GT:AD:AF:DP	1/2:12,22,57:0.24,0.63:91
chr13	50121511	rs1570884	A	G	2655.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr13	50123622	rs3751384	G	C	4184.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr13	50126382	rs2274278	G	A	2284.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr13	50129615	rs2274284	A	G	4101.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr13	50134358	rs12146924	T	C	1883.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr13	50141345	rs4942848	G	A	1157.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr13	50205025	rs3803185	T	C	7505.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr13	50242696	rs7999786	C	T	399.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.31;QD=23.52;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr13	50244041	rs9535292	T	C	3844.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr13	50260905	rs6561552	T	C	2541.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:1,83:0.99:84
chr13	50296026	rs9535310	T	C	2427.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr13	50296115	rs1127021	C	T	4708.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr13	50299677	rs2273817	T	C	2172.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr13	50306823	rs11342957	GA	G	1182.73	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:5,68:0.93:73
chr13	50366717	.	GGA	G	1229.73	.	AC=2;AF=1.00;AN=2;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.40;SOR=0.906;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr13	50366723	.	GGGGGAGAGCGGGAGGGGGGA	G	1224.73	.	AC=2;AF=1.00;AN=2;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.36;SOR=0.922;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr13	50464697	rs34893433	T	TG	1550.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr13	50467124	rs7316930	T	C	7221.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr13	51522081	.	AT	A	43.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.576;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.29;ReadPosRankSum=1.722;SOR=0.489;set=HC	GT:AD:AF:DP	0/1:24,10:0.29:34
chr13	51594741	rs1328361	T	G	3836.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr13	51603768	rs9568497	T	C	5872.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr13	51796468	rs7320388	T	C	42.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr13	51929359	rs6145055	T	TTCCACAGAGCCTTCAGTGGTAAACAA	3295.73	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr13	51936272	rs2408363	G	A	626.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:3,30:0.91:33
chr13	51956122	rs9526753	T	C	754.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr13	51969696	rs3825524	C	T	3481.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr13	51997092	rs9535663	C	T	266.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr13	52277693	rs9535738	G	T	351.28	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:1,14:0.93:15
chr13	52293532	rs912097	T	C	679.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr13	52313195	rs1885854	C	T	4036.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr13	52333955	rs147876825	TTTAACCCAAATCA	T	3765.73	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:1,87:0.99:88
chr13	52342206	rs1058142	G	A	1484.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr13	52345637	rs2296028	G	C	3121.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr13	52351037	rs2296026	C	T	769.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr13	52365407	rs71085098	C	CA	86.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.620;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=1.918;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=1.336;QD=3.34;ReadPosRankSum=-0.347;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:17,9:0.35:26
chr13	52373814	rs9535761	G	C	3158.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr13	52391341	rs975504	C	T	4001.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:2,145:0.99:147
chr13	52425546	.	CAAG	C	105.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.385;ClippingRankSum=0.000;DP=140;ExcessHet=3.0103;FS=1.154;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.80;ReadPosRankSum=0.725;SOR=0.940;set=HC	GT:AD:AF:DP	0/1:120,12:0.09:132
chr13	52425587	rs36141261	A	AT,ATT	2225.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.093;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=14.94;ReadPosRankSum=3.148;SOR=0.709;set=HC	GT:AD:AF:DP	1/2:24,99,26:0.66,0.17:149
chr13	52425658	rs71842329	CTT	C	646.90	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.300;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=1.976;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.38;ReadPosRankSum=0.953;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:11,34:0.76:45
chr13	52482399	rs35577493	CAG	C	3593.73	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr13	52515510	rs377284993	CA	C	121.75	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr13	52520719	rs41292784	C	T	747.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr13	52542796	rs2147363	T	G	693.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr13	52585548	rs2277448	G	T	6144.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:1,230:1.00:231
chr13	52585591	rs148013251	T	TCGGCG	2631.73	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:3,102:0.97:105
chr13	52602919	rs3825528	A	C	2029.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:1,74:0.99:75
chr13	52603194	rs3742289	G	T	6057.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr13	52603775	rs3742291	C	T	6107.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr13	52649974	.	CA	C	64.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.373;ClippingRankSum=0.000;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.51;ReadPosRankSum=-1.063;SOR=0.578;set=HC	GT:AD:AF:DP	0/1:29,14:0.33:43
chr13	52657287	rs9563091	A	G	1323.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr13	52657689	rs12585654	T	G	914.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.49;SOR=2.985;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr13	52657689	.	T	TG	317	.	AC=2;AF=1.00;AN=2;BRF=0.38;FR=1.0000;HP=12;HapScore=3;MGOF=1;MMLQ=28;MQ=60.0;NF=1;NR=3;PP=317;QD=80.5;SC=TTTTTTTTTTTTGAGATGGAG;SbPval=0.29;Source=Platypus;TC=24;TCF=2;TCR=22;TR=4;WE=52657697;WS=52657667;set=Platypus	GT:AD:AF:DP	1/1:20,4:0.17:24
chr13	52663491	rs9535861	A	G	2410.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr13	52684801	rs71665641	TAC	T	2353.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.132;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.43;MQRankSum=0.413;QD=30.57;ReadPosRankSum=1.871;SOR=1.300;set=HC	GT:AD:AF:DP	1/1:3,74:0.96:77
chr13	52701490	rs3076657	A	ACTT	6127.73	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr13	52701637	rs1886544	T	G	7619.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr13	52701782	rs1886543	T	C	1145.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr13	52707240	rs3368	C	G	5261.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr13	52707751	rs3831081	T	TCACA,TCACACA	2022.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=51;set=Intersection	GT:AF:DP	1/2:0.25,0.69:48
chr13	52709742	rs2408611	G	A	780.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr13	52710044	rs2296350	T	C	2833.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr13	52710058	rs2296349	T	G	2251.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr13	52717950	rs3783242	C	T	404.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr13	52718050	rs3837575	C	CT	1732.73	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr13	52726707	.	CT	C	54.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.516;ClippingRankSum=0.000;DP=48;ExcessHet=3.0103;FS=1.425;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=1.733;QD=1.16;ReadPosRankSum=-0.243;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:36,11:0.23:47
chr13	52952928	rs113543720	CA	C	619.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr13	52971893	rs3803264	G	A	7816.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:1,286:1.00:287
chr13	52989863	rs1056335	C	T	1953.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr13	53009048	rs11148252	C	T	1164.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr13	53010353	.	A	AACACACACACACAC	210.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.792;ClippingRankSum=-0.000;DP=10;ExcessHet=3.0103;FS=5.441;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=30.10;ReadPosRankSum=0.792;SOR=2.225;set=HC	GT:AD:AF:DP	0/1:1,6:0.86:7
chr13	53029770	rs72440971	CGCGGTGGCGGTGGCGGTG	C	7085.73	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr13	53030565	rs9536079	G	A	756.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr13	53035783	rs7337054	T	C	6897.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr13	53035925	rs7335867	A	G	7152.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr13	53036398	rs3803262	A	G	1093.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr13	53233194	rs9536223	A	T	183.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr13	53239754	.	C	CT	98.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.966;ClippingRankSum=0.000;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.60;ReadPosRankSum=-0.032;SOR=0.536;set=HC	GT:AD:AF:DP	0/1:27,11:0.29:38
chr13	53240884	rs9316580	G	C	557.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr13	53254082	rs4539485	T	C	583.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr13	53254296	rs7986540	A	G	351.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr13	53278067	rs3742297	T	C	364.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr13	53287023	rs2147692	G	C	873.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr13	53297962	rs61959657	G	A	354.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr13	55748673	rs1572687	T	C	454.78	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:1,19:0.95:20
chr13	60385060	rs10665848	A	ATTAC	1716.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr13	60407054	rs341514	G	A	70.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr13	61084936	rs370448567	CT	C	72.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.608;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=1.447;QD=2.27;ReadPosRankSum=-0.655;SOR=0.400;set=HC	GT:AD:AF:DP	0/1:21,11:0.34:32
chr13	61986918	rs3812872	C	A	9573.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	1/1:0,347:1.00:347
chr13	61988107	rs4281600	T	G	6603.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr13	61989235	rs114633084	C	T	1285.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr13	63745832	rs298898	G	A	1139.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:1,43:0.98:44
chr13	66878799	.	C	T	3525.77	.	AC=2;AF=1.00;AN=2;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr13	70314433	rs1559465	A	G	145.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr13	70314807	rs7331253	A	T	499.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:1,17:0.94:18
chr13	70370853	rs17727950	A	G	2268.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr13	70535347	rs41283976	A	T	1281.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.65;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr13	70535355	rs9592668	T	A	1520.73	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.53;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr13	70549942	rs144583054	CCA	C	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.414;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=5.191;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.86;ReadPosRankSum=0.191;SOR=2.409;set=HC	GT:AD:AF:DP	0/1:33,6:0.15:39
chr13	72038653	rs915052	C	A	601.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr13	72440658	.	TGCCGCC	T	2286.73	.	AC=2;AF=1.00;AN=2;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr13	73293249	rs67282069	CA	C	342.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.564;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.57;ReadPosRankSum=1.257;SOR=0.957;set=HC	GT:AD:AF:DP	0/1:13,27:0.68:40
chr13	73301655	rs1465897	A	C	5063.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr13	73301728	rs1465896	T	C	3108.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr13	73302157	rs11350390	CT	C	10903.73	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:1,318:1.00:319
chr13	73302378	rs150384029	T	C	6349.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:2,238:0.99:240
chr13	73302481	rs4885034	G	A	2636.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr13	73309347	rs9543106	C	T	2970.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr13	73317585	rs9600019	C	T	485.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr13	73329358	rs10887	G	A	8971.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:0,340:1.00:340
chr13	73343039	rs2196979	C	T	1255.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr13	73349359	rs7332388	G	C	3148.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr13	73366801	rs77614879	T	G	91.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.76;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr13	73372202	rs9543124	G	A	3491.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:2,135:0.99:137
chr13	73467847	rs141172083	GAAGT	G	322.75	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr13	73638121	rs67730943	C	CT	816.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=63.02;QD=29.17;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr13	73638125	rs4885061	G	T	873.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=63.02;QD=31.21;SOR=1.382;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr13	73650108	rs148760123	C	CA	647.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.840;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=17.51;ReadPosRankSum=1.220;SOR=1.038;set=HC	GT:AD:AF:DP	1/1:3,34:0.92:37
chr13	73650112	rs9573097	C	A	1749.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.68;SOR=3.664;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr13	74289799	rs6562780	A	T	1932.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr13	74339104	rs3764134	G	T	5421.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr13	75860804	rs534538	C	A	956.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr13	75863315	rs7332292	G	C	2572.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr13	75873787	rs2297207	G	A	2412.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr13	75876389	rs2297208	G	A	3587.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr13	75880667	rs2297209	G	A	1210.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr13	75884216	rs1062087	C	T	3132.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:2,118:0.98:120
chr13	75887127	rs2274757	T	C	566.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr13	75894015	rs2274758	T	C	943.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr13	75898596	rs2297210	C	A	1174.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr13	75901749	rs2297206	G	T	608.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr13	75910909	rs693134	C	A	1467.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr13	75910950	rs9573525	T	G	3318.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.66;SOR=1.532;set=HC	GT:AD:AF:DP	1/1:0,120:1.00:120
chr13	75915215	rs80163254	T	C	4732.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.10;QD=45.51;SOR=1.146;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr13	75915215	.	TAT	CCA	2937	.	AC=2;AF=1.00;AN=2;BRF=0.44;FR=1.0000;HP=1;HapScore=1;MGOF=31;MMLQ=28;MQ=60.09;NF=42;NR=22;PP=2937;QD=20;SC=TTAACAAAATTATTAAACAAC;SbPval=0.67;Source=Platypus;TC=69;TCF=43;TCR=26;TR=64;WE=75915225;WS=75915205;set=Platypus	GT:AD:AF:DP	1/1:5,64:0.93:69
chr13	75915216	rs80143047	A	C	4732.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.10;QD=45.51;SOR=1.146;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr13	75915217	rs76964739	T	A	4732.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.10;QD=44.65;SOR=1.136;set=HC	GT:AD:AF:DP	1/1:0,106:1.00:106
chr13	75915250	rs35018625	T	TA	4911.73	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr13	75915859	rs9888477	C	A	513.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr13	75923536	rs3831188	T	TA	308.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr13	75936519	rs7983969	C	G	5394.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr13	76055321	rs144814586	T	C	116.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr13	76055397	rs9573565	C	T	1403.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr13	76055820	rs7327548	G	C	6781.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr13	76101863	rs1408042	T	C	623.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr13	76102137	rs57959582	GCACA	G	344.74	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.77;QD=38.30;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr13	76124151	rs8192738	C	T	7336.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr13	76135028	rs4884008	T	A	1600.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr13	76140814	rs56945758	CT	C	617.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.550;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.62;MQRankSum=0.381;QD=18.72;ReadPosRankSum=1.419;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:1,32:0.97:33
chr13	76169234	rs7330411	G	A	603.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr13	76210742	rs2224797	A	C	1353.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr13	76370755	.	A	AT	163.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.094;ClippingRankSum=0.000;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.09;ReadPosRankSum=-0.080;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:120,30:0.20:150
chr13	76378459	rs625033	T	C	6187.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr13	76409436	rs2273997	A	G	2481.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr13	76410725	rs2273996	A	G	723.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr13	76417101	rs920701	C	T	1388.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr13	76419421	rs3832886	AT	A	1024.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr13	76423248	rs7986131	T	C	1595.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr13	76429619	rs4885354	C	A	364.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr13	76445155	rs9544057	G	C	3063.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr13	76445189	rs9600566	A	G	3805.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr13	76445316	rs9600567	C	T	3003.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr13	76457148	rs7987971	A	G	1471.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr13	76457183	rs9530477	T	C	2240.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr13	77522925	rs588702	T	C	1190.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr13	77531361	rs41287034	C	T	4189.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr13	77565972	rs654196	A	G	1728.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr13	77569901	rs605153	G	A	2853.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr13	77574518	rs58575113	TA	T	68.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.146;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=7.952;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.75;ReadPosRankSum=0.291;SOR=2.833;set=HC	GT:AD:AF:DP	0/1:13,12:0.48:25
chr13	77589725	rs599115	A	C	2663.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:2,110:0.98:112
chr13	77725106	rs9574006	C	A	2543.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr13	77732333	rs3861128	G	A	822.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr13	77739291	rs9318468	A	T	1700.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr13	77751892	rs4885445	C	T	5681.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:1,204:1.00:205
chr13	77792099	rs374242789	TA	T	94.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.597;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=1.080;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.10;ReadPosRankSum=1.048;SOR=0.951;set=HC	GT:AD:AF:DP	0/1:64,22:0.26:86
chr13	77818100	rs35429706	C	CA	1347.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.060;ClippingRankSum=0.000;DB;DP=232;ExcessHet=3.0103;FS=1.730;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=0.687;QD=8.64;ReadPosRankSum=0.306;SOR=0.924;set=HC	GT:AD:AF:DP	0/1:54,102:0.65:156
chr13	77835520	rs11436373	T	TA	1261.73	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:15,73:0.83:88
chr13	77900913	.	TCGC	T	56	.	AC=1;AF=0.500;AN=2;BRF=0.56;FR=0.5000;HP=3;HapScore=2;MGOF=5;MMLQ=24;MQ=60.0;NF=1;NR=1;PP=56;QD=32.0;SC=ATCATCATCCTCGCCGCCGCC;SbPval=0.12;Source=Platypus;TC=16;TCF=1;TCR=15;TR=2;WE=77900923;WS=77900903;set=Platypus	GT:AD:AF:DP	0/1:14,2:0.12:16
chr13	78146301	rs678047	C	T	3407.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr13	78191824	rs4142585	G	T	1481.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr13	78272267	rs201380414	T	TGG	1354.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr13	78272276	rs71102772	G	GC	1221.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr13	78477674	rs5348	A	G	4092.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr13	79194750	rs35712557	TGA	T	6166.73	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr13	79209382	rs9805409	A	C	652.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:1,24:0.96:25
chr13	79216178	rs9601108	G	A	339.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr13	79216356	.	GA	G	84.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.723;ClippingRankSum=0.000;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.63;ReadPosRankSum=-0.273;SOR=0.520;set=HC	GT:AD:AF:DP	0/1:37,15:0.29:52
chr13	79216418	rs7327732	A	G	825.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr13	79766100	.	C	G	3247.77	.	AC=2;AF=1.00;AN=2;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr13	79894877	rs34668220	C	CA	226.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.094;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=1.657;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.56;ReadPosRankSum=-1.777;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:12,18:0.60:30
chr13	79916792	rs374223990	T	TA	992.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr13	79918323	rs2274555	T	C	773.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr13	79928477	rs9574411	A	G	969.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr13	79932617	rs7994560	A	G	961.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr13	79939606	rs7319252	C	A	1043.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr13	79939921	rs11279869	TAAGAGA	T	1223.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr13	79946163	rs7325232	G	C	723.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr13	80910786	rs4728	C	A	1349.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr13	80910851	rs11911	A	C	1554.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:1,56:0.98:57
chr13	80911525	rs504122	G	A	7378.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr13	83597934	rs2639486	A	T	119.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr13	83598060	rs2807479	C	T	55.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr13	86369120	rs3825413	C	T	5244.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr13	88270840	rs4036976	CTGT	C	3545.73	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr13	88270860	rs956960	A	G	4312.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr13	92345387	rs554857	G	A	1656.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr13	92345579	rs553717	C	T	5851.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr13	93142362	rs722178	C	T	3142.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr13	94938785	rs1409174	A	G	1010.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr13	94938808	rs56210803	GAT	G	1224.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr13	94958100	rs10492630	T	A	391.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr13	95090692	rs1540979	T	A	742.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr13	95096505	rs7339198	G	A	426.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr13	95097956	rs755684	C	T	5966.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr13	95227128	.	C	CA	96.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.609;ClippingRankSum=0.000;DP=58;ExcessHet=3.0103;FS=5.071;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.06;ReadPosRankSum=-0.586;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:35,12:0.26:47
chr13	95243270	rs9301979	G	A	8429.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr13	95364046	rs1060474	C	G	4400.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr13	95364337	rs2253604	T	G	6586.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr13	95673791	rs3742106	A	C	5814.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:4,219:0.98:223
chr13	95673939	rs9524765	A	G	1680.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:5,77:0.94:82
chr13	95695837	rs9302041	A	T	2452.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:1,86:0.99:87
chr13	95705453	rs11568643	T	C	8128.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr13	95714976	rs1751034	C	T	1923.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr13	95715147	rs201160973	AAAAAG	A	198.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.067;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=1.758;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.89;ReadPosRankSum=1.504;SOR=0.897;set=HC	GT:AD:AF:DP	0/1:74,31:0.30:105
chr13	95715148	rs202097426	AAAAG	A	658.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.442;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.749;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.27;ReadPosRankSum=-1.360;SOR=0.563;set=HC	GT:AD:AF:DP	0/1:51,54:0.51:105
chr13	95726541	rs1189466	A	G	10366.77	.	AC=2;AF=1.00;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	1/1:0,391:1.00:391
chr13	95727780	rs1678339	T	C	3381.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr13	95735604	rs1189437	G	T	2396.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr13	95829870	rs1751005	T	C	1036.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr13	95847020	rs2274403	A	G	3475.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:2,132:0.99:134
chr13	95858686	rs3818493	G	A	1116.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr13	95858704	rs3818494	G	C	1607.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr13	95858978	rs2274405	T	C	4190.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr13	95858996	rs2274406	T	C	4279.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr13	95859974	rs2274408	T	C	381.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr13	95860288	rs2274410	C	A	1187.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr13	95861804	rs899494	A	G	3064.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr13	95861981	rs1678403	C	G	291.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr13	95862873	rs4148472	G	A	1176.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr13	95862896	rs899496	A	G	1913.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr13	95863143	rs899497	A	G	1781.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:2,66:0.97:68
chr13	95921690	rs1970476	T	A	161.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.150;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=4.771;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=17.97;ReadPosRankSum=0.637;SOR=3.126;set=HC	GT:AD:AF:DP	0/1:3,6:0.67:9
chr13	95921692	rs1970475	T	A	82.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.712;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.20;ReadPosRankSum=-0.819;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:5,4:0.44:9
chr13	96506664	rs11070154	A	G	5959.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr13	96529376	rs10601193	TCTGC	T	232.80	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr13	96539977	rs11842395	T	G	152.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.01;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr13	96539979	rs11842396	T	C	152.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.01;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr13	96540141	rs9525075	T	C	1288.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.57;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr13	96540143	rs9525076	T	C	1288.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.44;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr13	96540204	rs12876018	T	G	1043.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.85;SOR=0.788;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr13	96578189	rs7985727	G	A	182.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr13	96599271	rs7986005	C	T	1024.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr13	96599433	rs9556512	A	C	1134.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr13	96599445	rs9556513	C	T	1038.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr13	96636170	rs9562008	G	C	984.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr13	96638636	rs816142	A	C	1554.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr13	96641695	rs555120	T	G	1738.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr13	97999000	.	G	A	2961.77	.	AC=2;AF=1.00;AN=2;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.76;SOR=2.235;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr13	98629334	rs9517155	G	C	6100.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:1,233:1.00:234
chr13	98632349	rs555647	A	G	837.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr13	98634572	rs11620106	T	A	579.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr13	98634737	rs182994654	AT	A	89.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.732;ClippingRankSum=0.000;DB;DP=231;ExcessHet=3.0103;FS=1.507;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=2.196;QD=0.41;ReadPosRankSum=-0.830;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:177,40:0.18:217
chr13	98637917	rs11366582	CT	C	1353.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:4,34:0.89:38
chr13	98637931	rs60936969	T	A	1419.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:3,36:0.92:39
chr13	98640318	rs592246	C	T	1869.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr13	98640386	rs588144	A	G	1056.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr13	98645580	rs56411106	G	A	1627.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr13	98650024	rs651241	G	T	1423.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr13	98658358	rs633161	G	A	4144.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr13	98666549	rs6491395	T	C	1170.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr13	98670641	rs528546	G	C	1510.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr13	98829176	rs628778	T	C	7633.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr13	98860660	rs285108	A	G	104.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.98;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr13	99061556	rs5806061	C	CT	3574.73	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:9,167:0.95:176
chr13	99090040	rs35861926	T	G	1385.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr13	99090166	rs59023150	TG	T	1564.73	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr13	99093094	rs2146998	T	C	2870.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr13	99098318	rs2274053	C	T	3281.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr13	99098470	rs2274054	C	T	1603.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr13	99098882	rs2281766	A	C	8702.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr13	99100474	rs9517310	C	T	2413.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr13	99105395	rs8481	G	A	1113.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.90;SOR=1.455;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr13	99109319	rs2031237	C	A	450.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr13	99112468	rs112280830	T	TGCCTGAC	5086.73	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr13	99112680	rs4771305	C	T	6043.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr13	99112754	rs4772083	TT	GC	2784.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr13	99115838	rs56325686	TA	T	707.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.327;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=1.133;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.86;ReadPosRankSum=0.298;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:31,59:0.66:90
chr13	99115927	rs2296149	A	G	6417.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:1,248:1.00:249
chr13	99127252	rs9513430	C	G	6075.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr13	99338238	rs36004561	CA	C	83.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.154;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.99;ReadPosRankSum=1.653;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:16,12:0.43:28
chr13	99354931	rs1768042	C	T	237.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr13	99356612	rs1339067	A	G	4021.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr13	99361221	rs61087152	CT	C	52.87	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.90;QD=10.57;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr13	99361959	rs2297319	G	A	4224.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr13	99363919	rs6145194	GGTTTT	G	701.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr13	99404743	rs4646208	T	A	1579.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr13	99404761	rs4646207	C	T	1791.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr13	99447005	rs812808	T	C	2928.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr13	99448441	rs9554522	T	A	1920.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr13	99448608	rs9554523	C	A	3141.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr13	99448623	rs9554524	A	G	2590.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr13	99449579	rs1289314	T	C	6729.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr13	99449755	rs1289315	G	A	3710.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr13	99457552	rs7990741	T	A	1966.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr13	99459891	rs9557078	A	C	3933.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr13	99461532	rs371432796	GTTTTT	G	5617.73	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr13	99462593	rs2282134	C	T	1349.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr13	99482030	rs9517459	G	C	2901.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr13	99483856	rs2296986	C	T	5841.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr13	99497760	rs2183093	G	T	1399.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr13	99534048	rs6491461	G	A	1527.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr13	99537431	rs2026024	G	A	1579.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr13	99538711	rs6491465	C	G	2222.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr13	99607581	rs9513518	T	A	577.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.89;SOR=2.531;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr13	99607911	rs8002389	A	G	1068.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr13	99629961	rs34071102	C	CTTGA	412.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr13	99630263	rs9513522	G	A	1427.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr13	99667961	rs7330438	G	A	1698.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr13	99667982	rs4772168	T	C	1114.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr13	99738372	rs61970775	G	T	1036.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr13	99853225	rs7332516	C	G	6924.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:1,257:1.00:258
chr13	99853443	rs7338947	T	G	2905.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr13	99895965	rs4771326	G	A	560.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr13	99970429	rs56695114	CT	C	1390.73	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:1,66:0.99:67
chr13	100181915	rs4772217	A	G	519.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr13	100201640	rs3803255	A	G	177.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr13	100622667	rs71114653	TGGC	T	540.73	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.59;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr13	100638090	rs34544768	G	GT	141.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=1.152;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.25;ReadPosRankSum=0.799;SOR=0.929;set=HC	GT:AD:AF:DP	0/1:45,18:0.29:63
chr13	100921056	rs4306370	A	G	2778.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr13	100945533	rs9300598	G	A	4559.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr13	100962046	.	A	AAT	113	.	AC=1;AF=0.500;AN=2;BRF=0.49;FR=0.5000;HP=2;HapScore=1;MGOF=3;MMLQ=21;MQ=60.0;NF=3;NR=1;PP=113;QD=31.0;SC=CATAGTTCTAAATATATATAT;SbPval=0.68;Source=Platypus;TC=24;TCF=18;TCR=6;TR=4;WE=100962054;WS=100962036;set=Platypus	GT:AD:AF:DP	1/0:20,4:0.17:24
chr13	101020695	rs9518061	A	G	2372.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:2,88:0.98:90
chr13	101143782	rs4772295	A	G	469.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.72;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr13	101144031	rs4772296	A	G	962.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr13	101182211	rs3059677	CGGTGG	C	1608.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:2,39:0.95:41
chr13	101264633	rs1572641	C	T	2697.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr13	101266751	.	T	TA	59.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.047;ClippingRankSum=0.000;DP=115;ExcessHet=3.0103;FS=2.283;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.777;QD=0.66;ReadPosRankSum=0.887;SOR=0.384;set=HC	GT:AD:AF:DP	0/1:72,19:0.21:91
chr13	101286924	rs1890861	T	C	579.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr13	101287340	rs946837	C	T	5819.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr13	101287365	rs946838	T	C	3981.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr13	101288992	rs3803256	C	T	5092.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr13	101289998	rs7985718	C	A	4408.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr13	101294428	rs9585476	C	G	2311.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr13	101308796	.	C	CTTT	72.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.227;ClippingRankSum=-0.000;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.61;ReadPosRankSum=-0.349;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:5,6:0.55:11
chr13	101308836	rs11315434	AC	A	317.74	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr13	101316313	rs1298168	C	T	920.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr13	101316378	rs1283208	A	G	2018.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr13	101318136	rs945962	C	T	517.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr13	101321067	rs2791680	T	C	1340.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr13	101322622	rs1283201	G	C	2514.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr13	101712426	rs2274085	G	T	587.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr13	101727043	.	CAG	C	607.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.702;ClippingRankSum=0.000;DP=203;ExcessHet=3.0103;FS=1.890;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.67;ReadPosRankSum=0.991;SOR=0.929;set=HC	GT:AD:AF:DP	0/1:92,38:0.29:130
chr13	101735026	rs12430032	T	A	959.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr13	101735211	rs17677552	G	A	5789.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr13	101736075	rs686141	A	G	2601.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr13	101753023	rs113145864	C	CTG	3280.73	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr13	101753025	rs57703343	GT	G	3280.73	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr13	101755480	rs9300647	G	T	2475.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr13	101755813	rs7331375	C	A	919.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr13	101795160	rs660622	C	A	202.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr13	101795317	rs673213	A	C	1700.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:4,65:0.94:69
chr13	101795373	rs17484928	C	A	3184.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:4,123:0.97:127
chr13	101795422	rs661585	A	G	4320.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr13	101833386	rs9582462	A	C	820.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr13	101833450	rs896560	C	T	2572.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr13	101890040	rs9518352	A	G	341.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr13	102021517	.	ATGTG	A	70.73	.	AC=1;AF=0.500;AN=2;DP=34;set=Intersection	GT:AD:AF:DP	0/1:20,4:0.17:24
chr13	102106276	rs2297700	G	C	1612.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr13	102344867	rs981073	A	G	816.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr13	102368056	rs1436266	G	T	2621.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr13	103257297	.	AT	A	111.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.572;ClippingRankSum=0.000;DP=111;ExcessHet=3.0103;FS=3.909;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.26;ReadPosRankSum=0.233;SOR=1.312;set=HC	GT:AD:AF:DP	0/1:66,23:0.26:89
chr13	103289409	rs9518799	A	G	1756.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr13	103301537	rs664660	G	T	1461.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr13	103346659	rs7981120	G	A	1395.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.85;SOR=0.931;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr13	103346806	rs2390760	C	G	2410.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.20;SOR=0.829;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr13	103384824	rs9300756	G	A	2185.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr13	103385015	rs6491707	A	G	7903.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr13	103385299	rs7335290	A	C	3191.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr13	103385798	rs7983175	T	C	5601.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr13	103386116	rs7982465	C	G	7038.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr13	103386283	rs7982670	A	G	6441.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr13	103388220	rs9300758	A	G	4504.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr13	103391634	rs7322112	C	T	3360.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr13	103394003	rs1449707	G	A	8115.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr13	103394613	rs9585986	T	G	5909.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr13	103394716	rs9585987	T	C	3163.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr13	103395819	rs1375720	C	T	2644.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr13	103396716	rs6491708	C	G	2956.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr13	103397583	rs9582626	C	G	5943.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr13	103400083	rs1026158	G	A	10214.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:1,377:1.00:378
chr13	103400729	rs12583104	G	A	6026.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr13	103402522	rs9300760	C	T	6919.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr13	103402772	rs9284197	T	C	361.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr13	103410782	rs1375719	T	C	1415.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr13	103410914	rs12855785	A	T	1999.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr13	103445609	rs11441956	G	GT	855.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr13	103474031	rs2148449	C	T	2789.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr13	103484060	rs2181676	G	A	2850.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr13	103484107	rs3825519	C	T	1083.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr13	103491172	rs2281886	G	A	2474.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr13	103491223	rs7337774	C	G	1200.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr13	103504517	rs1047768	T	C	7127.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:3,269:0.99:272
chr13	103506509	rs1535729	A	C	925.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr13	103510896	rs3736865	C	T	715.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:1,24:0.96:25
chr13	103511301	rs4150299	T	C	6928.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr13	103514091	rs7982448	T	C	1927.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.77;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr13	103518769	rs6491716	T	C	1633.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr13	103524762	rs4150360	C	T	2612.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr13	103527849	rs9514066	G	C	6607.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr13	103527930	rs9514067	G	C	4662.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr13	103528337	rs873601	G	A	393.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr13	103698363	rs2301157	A	G	1257.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr13	103698436	rs199939905	G	A	5204.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:1,191:0.99:192
chr13	103698630	rs279940	C	T	4020.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr13	103703579	rs8000956	T	C	4266.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr13	103705044	rs188096	A	C	8092.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr13	106142235	rs778294	C	T	2535.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr13	107145463	rs7995379	G	C	6119.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr13	107145829	rs3742160	A	T	2415.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr13	107145904	rs3742159	C	T	513.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr13	107209378	rs9587157	T	C	2948.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:1,114:0.99:115
chr13	108183631	rs912446	A	G	847.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr13	108955464	rs1224145	C	G	330.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.56;SOR=2.670;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr13	108959080	rs11381410	A	AT	480.82	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:4,27:0.87:31
chr13	109458889	rs9514920	A	G	494.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr13	109459020	rs9301323	G	A	2792.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr13	109472601	rs2146327	G	C	1246.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr13	109472849	rs9521065	A	G	2641.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr13	109472933	rs9514924	T	C	831.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr13	109496928	rs7989802	C	T	1928.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr13	109540969	rs7139741	G	T	677.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr13	109550561	rs7322768	A	G	4290.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr13	109717874	.	G	GA	58.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.252;ClippingRankSum=0.000;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.59;ReadPosRankSum=-0.127;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:82,17:0.17:99
chr13	109717928	rs1431267	A	G	7064.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr13	109793474	rs28705148	T	C	9010.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:0,330:1.00:330
chr13	109793720	rs7986595	A	C	8577.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,327:1.00:327
chr13	109831849	rs2038707	G	C	5319.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:1,195:0.99:196
chr13	109832084	rs1033870	G	A	2557.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr13	110408608	rs1865434	C	T	3075.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr13	110435914	rs12853546	G	A	4162.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr13	110807474	rs615742	T	C	2301.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:1,80:0.99:81
chr13	110807496	rs616089	T	C	2924.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr13	110813523	rs2275842	C	T	1063.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.32;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr13	110813532	rs2275843	G	A	1146.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.96;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr13	110817171	rs1816884	G	C	2016.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr13	110819457	rs652572	A	G	1640.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.58;SOR=2.712;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr13	110819460	rs1778817	G	A	1640.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.18;SOR=2.554;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr13	110819586	rs589985	G	A	4039.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:2,153:0.99:155
chr13	110821844	rs3832901	A	AAC	679.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.391;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=3.838;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=0.000;QD=16.58;ReadPosRankSum=-0.471;SOR=1.789;set=HC	GT:AD:AF:DP	0/1:10,31:0.76:41
chr13	110839550	rs536174	T	G	2692.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr13	110843985	rs1373744	T	C	1587.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr13	110844721	rs2241967	C	T	2436.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr13	110845314	rs685884	G	A	2160.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr13	110847227	rs505050	G	T	466.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.43;SOR=3.442;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr13	110856085	rs648263	A	G	660.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr13	110857823	rs482757	C	T	6022.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:1,229:1.00:230
chr13	110857895	rs677877	A	G	4214.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr13	110859316	.	G	GA	154.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.604;ClippingRankSum=0.000;DP=78;ExcessHet=3.0103;FS=1.009;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.24;ReadPosRankSum=0.337;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:49,20:0.29:69
chr13	110859690	rs598819	A	G	4009.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr13	110859743	rs598893	C	T	6073.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr13	110861785	rs645114	C	G	2337.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr13	110864225	rs532625	A	T	2706.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr13	110864396	rs626444	T	C	2427.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr13	110959356	rs9515185	C	G	336.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr13	111077197	rs4238272	G	A	4557.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:1,165:0.99:166
chr13	111077400	rs58151684	AT	A	1794.73	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr13	111077450	rs7326522	G	A	986.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr13	111082157	rs3929758	C	A	1076.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr13	111091157	.	C	CCTCCACA	450.73	.	AC=2;AF=1.00;AN=2;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.83;QD=40.98;SOR=4.977;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr13	111091995	rs7991229	T	G	515.82	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:1,17:0.94:18
chr13	111098110	rs7489705	C	T	2459.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr13	111098226	rs4103	C	T	2638.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr13	111098338	rs7988186	A	T	643.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr13	111099057	rs45612833	G	A	1149.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr13	111099122	rs7326449	G	A	2346.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr13	111099338	rs35275552	T	TA	741.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.18;SOR=1.681;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr13	111102183	rs34734302	A	G	999.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:2,40:0.95:42
chr13	111110384	rs71440063	G	C	5364.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr13	111118580	rs1927352	G	A	977.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr13	111130226	rs9559818	G	A	1861.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr13	111130519	rs2281974	C	T	1033.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr13	111132820	rs1475438	G	A	2010.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr13	111137167	rs1983930	T	C	1503.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr13	111137465	rs2296852	G	A	849.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr13	111137488	rs11839527	G	A	628.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr13	111138255	rs2296851	G	A	1099.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr13	111142009	rs409345	A	C	8037.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.92;SOR=0.704;set=HC	GT:AD:AF:DP	1/1:0,183:1.00:183
chr13	111142016	rs368115	G	A	8138.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.52;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,187:1.00:187
chr13	111142227	rs749077	A	T	1033.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr13	111143755	rs413756	T	C	2813.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr13	111143851	rs402661	G	C	797.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr13	111144321	rs403839	G	A	1850.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr13	111145427	.	TG	CA	1100	.	AC=1;AF=0.500;AN=2;BRF=0.48;FR=0.5000;HP=3;HapScore=2;MGOF=22;MMLQ=28;MQ=56.49;NF=12;NR=10;PP=1100;QD=52.4303579483;SC=GACACCCCCATGGGTGAAATA;SbPval=0.07;Source=Platypus;TC=56;TCF=41;TCR=15;TR=22;WE=111145436;WS=111145424;set=Platypus	GT:AD:AF:DP	1/0:34,22:0.39:56
chr13	111145676	rs2391833	G	C	2541.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:3,101:0.97:104
chr13	111145779	rs9559826	C	T	383.74	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:2,17:0.89:19
chr13	111153934	rs378601	G	A	611.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr13	111154058	rs439831	T	A	5094.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.49;SOR=0.970;set=HC	GT:AD:AF:DP	1/1:0,112:1.00:112
chr13	111154061	rs409858	T	C	5225.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.55;SOR=0.910;set=HC	GT:AD:AF:DP	1/1:0,120:1.00:120
chr13	111154159	rs388222	C	T	2115.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr13	111155363	rs406174	G	A	1985.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr13	111155428	rs401316	C	T	5380.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr13	111155773	rs438758	T	C	3055.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr13	111156411	rs414881	G	A	1296.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr13	111156499	rs4771683	C	T	3216.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr13	111156773	rs4771684	A	G	280.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr13	111158874	rs445348	A	G	6762.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr13	111176393	rs419244	A	G	6644.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:2,250:0.99:252
chr13	111277810	rs330561	C	A	853.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:1,32:0.97:33
chr13	111293585	rs10709696	TG	T	372.73	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr13	111294920	rs11414164	G	GC	11488.73	.	AC=2;AF=1.00;AN=2;DB;DP=392;MQ=60.06;set=Intersection	GT:AD:AF:DP	1/1:0,362:1.00:362
chr13	111315249	rs7989346	G	A	2754.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:3,105:0.97:108
chr13	111315405	rs7993933	G	A	4394.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr13	111315489	rs2296659	A	G	1381.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr13	111315506	rs376834	A	C	970.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr13	111319754	rs4628819	T	C	9295.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chr13	111340038	.	A	G	59.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.262;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;FS=6.908;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.49;ReadPosRankSum=2.024;SOR=0.916;set=HC	GT:AD:AF:DP	0/1:16,8:0.33:24
chr13	111340039	.	G	GA	380.73	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=-1.026;ClippingRankSum=-0.000;DP=35;ExcessHet=3.0103;FS=2.757;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.69;ReadPosRankSum=2.239;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:4,26:0.87:30
chr13	111340101	rs72661692	T	A	2386.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr13	111364877	.	A	AGG	157.74	.	AC=2;AF=1.00;AN=2;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr13	111368164	rs7338333	T	G	2429.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr13	111545198	rs10664568	A	AGT	592.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr13	111562803	rs35930208	T	C	1312.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr13	111566989	rs59070384	A	G	947.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr13	111567039	rs56924528	G	C	2153.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:2,83:0.98:85
chr13	111893710	rs57317822	G	A	2684.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr13	111933098	rs2296353	C	G	1251.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr13	111953299	.	C	CT	70.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.469;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;FS=3.542;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.91;ReadPosRankSum=0.497;SOR=0.232;set=HC	GT:AD:AF:DP	0/1:26,11:0.30:37
chr13	111953317	rs145135139	C	T	1075.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr13	111953903	rs3742181	T	C	5661.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr13	111955465	rs1555751	T	C	762.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr13	111968680	rs7991693	C	T	892.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr13	111973342	rs57892141	T	TG	275.90	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:1,12:0.92:13
chr13	111973353	rs56975726	A	G	522.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.21;SOR=3.767;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr13	112278338	rs7992732	G	A	3792.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr13	112278521	rs7992659	C	G	3802.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr13	112297403	rs8000950	C	T	4992.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:2,192:0.99:194
chr13	113032915	rs7324712	A	G	659.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.44;SOR=2.387;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr13	113032962	rs9550063	G	C	1736.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr13	113052388	rs2296895	A	G	9753.77	.	AC=2;AF=1.00;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	1/1:0,361:1.00:361
chr13	113052562	rs2296894	T	C	3190.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr13	113053470	rs10816	T	A	4255.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr13	113055295	rs3742225	A	G	809.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr13	113153114	rs9549532	T	C	1952.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr13	113158861	.	CAT	C	146.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.562;ClippingRankSum=0.000;DP=42;ExcessHet=3.0103;FS=7.917;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.67;ReadPosRankSum=0.642;SOR=0.066;set=HC	GT:AD:AF:DP	0/1:31,9:0.23:40
chr13	113333684	rs7338610	C	T	1433.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr13	113512331	rs9549575	C	T	1686.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:1,59:0.98:60
chr13	113525952	rs1765767	A	G	1046.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr13	113534907	rs9577174	T	C	4604.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr13	113534984	rs9577395	C	G	8523.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:4,316:0.99:320
chr13	113563351	rs2993328	A	G	793.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr13	113639862	rs2993287	G	A	3606.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.94;SOR=1.423;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr13	113639869	rs3011543	A	G	3435.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.81;SOR=1.488;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr13	113639872	rs3011542	A	G	3346.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.62;SOR=1.488;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr13	113681243	rs9549343	C	A	5002.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr13	113699488	rs3814266	T	C	6153.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr13	113733009	rs35155188	C	T	7458.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr13	113735390	rs494129	T	C	2226.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr13	113738175	rs491455	G	A	1071.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr13	113739518	rs546818	G	A	1011.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr13	113740706	rs1745949	A	G	1395.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr13	113741851	rs514181	C	A	1994.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr13	113742805	rs7986589	C	G	9989.77	.	AC=2;AF=1.00;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	1/1:0,379:1.00:379
chr13	113743768	.	T	C	989	.	AC=2;AF=1.00;AN=2;BRF=0.38;FR=1.0000;HP=2;HapScore=1;MGOF=15;MMLQ=24;MQ=59.15;NF=32;NR=7;PP=989;QD=26.2505439115;SC=TCTCATCCAGTCCGTCCGGGT;SbPval=0.6;Source=Platypus;TC=42;TCF=34;TCR=8;TR=39;WE=113743776;WS=113743758;set=Platypus	GT:AD:AF:DP	1/1:3,39:0.93:42
chr13	113744139	rs4907483	G	A	8115.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr13	113744370	rs4907484	C	T	3282.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr13	113745611	rs4907485	T	G	3197.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr13	113776947	rs563964	T	C	2005.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.65;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr13	113776947	.	TGC	CGA	1758	.	AC=2;AF=1.00;AN=2;BRF=0.26;FR=1.0000;HP=1;HapScore=1;MGOF=2;MMLQ=24;MQ=60.0;NF=33;NR=6;PP=1758;QD=46.4478942272;SC=GATGAGGTTCTGCGGGGCCTC;SbPval=0.74;Source=Platypus;TC=42;TCF=34;TCR=8;TR=39;WE=113776957;WS=113776941;set=Platypus	GT:AD:AF:DP	1/1:3,39:0.93:42
chr13	113776949	rs3211717	C	A	2005.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.60;SOR=2.985;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr13	113801737	rs5960	C	T	3481.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr13	113801843	rs2031184	A	G	2666.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr13	113812962	rs2273971	G	A	1266.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr13	113818707	.	AAC	A	2966.73	.	AC=2;AF=1.00;AN=2;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr13	113818713	.	T	C	3061.77	.	AC=2;AF=1.00;AN=2;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr13	113818817	rs150762485	T	TC	4809.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.861;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=29.33;ReadPosRankSum=1.771;SOR=0.814;set=HC	GT:AD:AF:DP	1/1:2,162:0.99:164
chr13	113818900	rs564081	A	G	4396.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr13	113833499	rs486407	G	A	785.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr13	113852425	rs546686	C	T	4097.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr13	113854600	rs3751412	T	C	1398.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr13	113854715	rs3751413	C	T	5262.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr13	113862801	rs9549692	G	A	2968.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr13	113882221	rs34413442	C	CA	131.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.786;ClippingRankSum=-0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.32;ReadPosRankSum=-0.979;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:6,12:0.67:18
chr13	113888201	rs2146408	T	C	3478.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr13	113889474	rs2287250	C	T	8176.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr13	113891075	rs2287253	G	A	2075.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr13	113891359	rs2287254	A	G	179.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr13	113899004	rs3932499	C	A	696.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr13	113900197	rs2302756	G	A	1221.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr13	113917767	rs4907602	T	C	1968.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr13	113951722	rs7983578	C	T	169.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr13	113965176	rs9577503	C	A	3632.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr13	113978969	rs912010	G	A	1911.73	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr13	113999051	rs4406954	C	A	1070.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.24;QD=25.49;SOR=1.005;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr13	114018038	rs9549753	C	A	884.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr13	114083473	rs74520894	C	T	2182.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr13	114150356	.	GGA	G	61.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.166;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.43;ReadPosRankSum=0.535;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:14,4:0.22:18
chr13	114240067	rs113638790	CT	C	122.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.330;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=1.626;QD=2.23;ReadPosRankSum=-0.743;SOR=0.887;set=HC	GT:AD:AF:DP	0/1:35,20:0.36:55
chr13	114312354	rs9285616	T	G	3088.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr13	114453605	.	C	CTGTGTGCACG	9385.73	.	AC=2;AF=1.00;AN=2;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr13	114537517	rs8191974	C	T	2241.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr13	114751040	rs71449038	G	A	1404.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.01;SOR=0.767;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr13	114751359	rs10781677	A	G	2042.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr13	115002439	.	G	A	446.78	.	AC=2;AF=1.00;AN=2;DP=20;set=Intersection	GT:AD:AF:DP	1/1:1,19:0.95:20
chr13	115010254	rs3211416	C	T	2927.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr14	19685614	.	C	T	152.03	.	AC=2;AF=1.00;AN=2;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.00;QD=38.01;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr14	19685620	.	C	A	152.03	.	AC=2;AF=1.00;AN=2;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.00;QD=38.01;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr14	19685626	.	C	T	152.03	.	AC=2;AF=1.00;AN=2;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.00;QD=38.01;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr14	20201972	rs4391979	A	C	6415.77	.	AC=1;AF=0.500;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	0/1:106,264:0.71:370
chr14	20202040	rs8011997	T	A	5449.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:79,211:0.73:290
chr14	20215929	rs138558904	T	C	10409.77	.	AC=1;AF=0.500;AN=2;DB;DP=626;set=Intersection	GT:AD:AF:DP	0/1:178,444:0.71:622
chr14	20216298	rs12896533	T	C	13154.77	.	AC=1;AF=0.500;AN=2;DB;DP=790;set=Intersection	GT:AD:AF:DP	0/1:224,557:0.71:781
chr14	20295510	rs7145672	C	T	1341.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:16,49:0.75:65
chr14	20295763	rs11621854	C	T	4875.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:88,198:0.69:286
chr14	20295778	rs11621883	CC	AG	7088.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;JOINED;set=Intersection	GT:AD:AF:DP	0/1:77,177:0.70:254
chr14	20295834	rs2801164	T	C	6620.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr14	20296004	rs2318279	C	T	15498.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.586;ClippingRankSum=0.000;DB;DP=602;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.30;MQRankSum=-9.132;QD=25.79;ReadPosRankSum=0.050;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:210,391:0.65:601
chr14	20296010	rs17114261	G	C	15560.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.519;ClippingRankSum=0.000;DB;DP=590;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.47;MQRankSum=-9.348;QD=26.42;ReadPosRankSum=-0.283;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:205,384:0.65:589
chr14	20296541	rs56930122	C	CAA	2817.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.816;ClippingRankSum=0.000;DB;DP=276;ExcessHet=3.0103;FS=2.488;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=0.010;QD=13.75;ReadPosRankSum=0.689;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:58,147:0.72:205
chr14	20296658	rs10140079	A	G	830.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:10,28:0.74:38
chr14	20344373	rs142226597	CTT	C,CT	844.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=2.031;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=8.631;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.21;MQRankSum=0.775;QD=8.89;ReadPosRankSum=1.488;SOR=1.169;set=HC	GT:AD:AF:DP	1/2:21,40,34:0.42,0.36:95
chr14	20345346	rs12883767	A	T	5469.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:79,231:0.75:310
chr14	20403909	rs2792148	T	C	16161.77	.	AC=2;AF=1.00;AN=2;DB;DP=620;set=Intersection	GT:AD:AF:DP	1/1:0,605:1.00:605
chr14	20404736	rs2792146	G	A	13804.77	.	AC=2;AF=1.00;AN=2;DB;DP=528;set=Intersection	GT:AD:AF:DP	1/1:2,517:1.00:519
chr14	20404767	rs2792145	A	G	11609.77	.	AC=2;AF=1.00;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	1/1:0,433:1.00:433
chr14	20404874	rs2792144	C	T	2922.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr14	20444490	rs11158071	C	T	17558.77	.	AC=2;AF=1.00;AN=2;DB;DP=651;set=Intersection	GT:AD:AF:DP	1/1:1,643:1.00:644
chr14	20470399	rs7493807	G	A	16273.77	.	AC=2;AF=1.00;AN=2;DB;DP=622;set=Intersection	GT:AD:AF:DP	1/1:4,604:0.99:608
chr14	20482471	rs12590785	C	T	3871.77	.	AC=1;AF=0.500;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	0/1:130,181:0.58:311
chr14	20501962	rs2775261	G	C	132.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr14	20502044	rs17277025	G	T	402.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:38,23:0.38:61
chr14	20528207	rs1958715	G	A	2471.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr14	20528250	rs45584133	G	T	1814.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:100,84:0.46:184
chr14	20528321	rs1958716	A	G	10757.77	.	AC=2;AF=1.00;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	1/1:0,393:1.00:393
chr14	20528359	rs1959630	G	T	23224.77	.	AC=2;AF=1.00;AN=2;DB;DP=532;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.16;QD=44.84;SOR=0.942;set=HC	GT:AD:AF:DP	1/1:0,518:1.00:518
chr14	20528362	rs1958717	A	G	23343.77	.	AC=2;AF=1.00;AN=2;DB;DP=543;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.16;QD=44.13;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,529:1.00:529
chr14	20528448	rs112192573	TCATAGATTTGCTCACTGAC	T	21250.73	.	AC=2;AF=1.00;AN=2;DB;DP=527;set=Intersection	GT:AD:AF:DP	1/1:0,479:1.00:479
chr14	20528505	rs2775253	T	A	6377.77	.	AC=1;AF=0.500;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	0/1:150,268:0.64:418
chr14	20528528	rs2775254	G	A	5551.77	.	AC=1;AF=0.500;AN=2;DB;DP=373;MQ=60.09;set=Intersection	GT:AD:AF:DP	0/1:143,227:0.61:370
chr14	20528682	rs45585336	T	C	3010.77	.	AC=1;AF=0.500;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	0/1:234,147:0.39:381
chr14	20529019	rs1959629	C	T	4833.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:90,135:0.60:225
chr14	20529043	rs1959628	C	G	4690.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:85,128:0.60:213
chr14	20529148	rs56327453	A	C	385.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:68,25:0.27:93
chr14	20529177	rs1959627	C	T	1252.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:11,56:0.84:67
chr14	20665887	rs4981823	G	C	11956.77	.	AC=2;AF=1.00;AN=2;DB;DP=434;MQ=59.99;set=Intersection	GT:AD:AF:DP	1/1:0,426:1.00:426
chr14	20666175	rs55781225	C	CA	16521.73	.	AC=2;AF=1.00;AN=2;DB;DP=678;set=Intersection	GT:AD:AF:DP	1/1:4,643:0.99:647
chr14	20697600	rs12434822	T	G	9557.77	.	AC=2;AF=1.00;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	1/1:0,349:1.00:349
chr14	20757804	rs3737220	C	A	1629.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:125,82:0.40:207
chr14	20760066	rs1953549	T	A	1271.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.754;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=1.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.25;ReadPosRankSum=0.176;SOR=0.558;set=HC	GT:AD:AF:DP	0/1:54,59:0.52:113
chr14	20760349	rs11625081	GC	AA	1003.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;JOINED;set=Intersection	GT:AD:AF:DP	0/1:39,28:0.42:67
chr14	20763446	rs1953551	T	C	6293.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr14	20763824	.	T	TA	87.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.125;ClippingRankSum=0.000;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.99;ReadPosRankSum=0.194;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:69,20:0.22:89
chr14	20764031	rs4981148	C	T	400.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:57,23:0.29:80
chr14	20764094	rs4981951	G	C	163.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:31,9:0.23:40
chr14	20764585	rs1953552	A	C	4179.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:99,196:0.66:295
chr14	20767618	rs2318864	G	A	3063.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:93,145:0.61:238
chr14	20767706	rs945459	C	T	1830.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:39,82:0.68:121
chr14	20769870	rs3825766	G	A	385.82	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:2,15:0.88:17
chr14	20770036	rs3742945	T	C	2452.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:44,113:0.72:157
chr14	20784117	rs12889262	A	G	953.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:32,44:0.58:76
chr14	20784718	rs1132644	G	T	295.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:36,17:0.32:53
chr14	20788652	rs11292211	TA	T	138.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.906;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=3.670;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.10;ReadPosRankSum=0.898;SOR=1.532;set=HC	GT:AD:AF:DP	0/1:50,16:0.24:66
chr14	20794509	rs884368	A	G	700.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:42,35:0.45:77
chr14	20813289	rs2297616	G	A	593.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:60,30:0.33:90
chr14	20813672	rs3093890	A	G	831.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:89,44:0.33:133
chr14	20815013	rs1713430	C	T	1857.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:207,101:0.33:308
chr14	20818602	rs3093902	C	G	783.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:35,37:0.51:72
chr14	20819112	rs3093904	T	A	608.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:29,26:0.47:55
chr14	20820537	rs1760919	A	G	551.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:42,30:0.42:72
chr14	20824181	rs3093930	T	C	9686.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	1/1:0,377:1.00:377
chr14	20824415	rs3093933	G	T	1428.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:126,75:0.37:201
chr14	20825013	rs878157	C	T	351.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:16,14:0.47:30
chr14	20825321	rs10625811	T	TTTCAC	1988.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.036;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=0.639;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=2.734;QD=12.35;ReadPosRankSum=1.137;SOR=0.783;set=HC	GT:AD:AF:DP	0/1:104,57:0.35:161
chr14	20825323	rs200223594	T	G	1997.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.630;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.72;ReadPosRankSum=1.123;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:104,53:0.34:157
chr14	20825362	rs3093939	G	A	512.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:62,29:0.32:91
chr14	20825965	rs2700	A	C	1510.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:64,62:0.49:126
chr14	20836923	rs10677311	GCACA	GCACACACA,G	854.73	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=74;set=Intersection	GT:AF:DP	0/1:0.43:60
chr14	20836940	.	CA	C	1118.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.834;ClippingRankSum=0.000;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=2.562;QD=11.78;ReadPosRankSum=1.739;SOR=0.597;set=HC	GT:AD:AF:DP	0/1:57,38:0.40:95
chr14	20836942	.	CACA	C	703.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.399;ClippingRankSum=0.000;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=2.648;QD=8.00;ReadPosRankSum=1.471;SOR=0.607;set=HC	GT:AD:AF:DP	0/1:61,27:0.31:88
chr14	20836945	.	A	C	414	.	AC=1;AF=0.500;AN=2;BRF=0.39;FR=0.5000;HP=2;HapScore=2;MGOF=38;MMLQ=24;MQ=60.16;NF=16;NR=15;PP=414;QD=14.4764907273;SC=ACACACACACACACACACTTA;SbPval=0.42;Source=Platypus;TC=77;TCF=43;TCR=34;TR=31;WE=20836953;WS=20836935;set=Platypus	GT:AD:AF:DP	0/1:46,31:0.40:77
chr14	20837033	rs2104978	T	C	1273.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:106,67:0.39:173
chr14	20837169	.	CT	C	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.094;ClippingRankSum=0.000;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.77;MQRankSum=-1.372;QD=1.63;ReadPosRankSum=1.899;SOR=0.392;set=HC	GT:AD:AF:DP	0/1:17,8:0.32:25
chr14	20844383	rs2228042	C	T	1825.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:170,102:0.38:272
chr14	20845374	.	TA	T	43.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.491;ClippingRankSum=0.000;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.62;ReadPosRankSum=-0.469;SOR=0.814;set=HC	GT:AD:AF:DP	0/1:53,17:0.24:70
chr14	20845521	rs2229101	A	C	2708.77	.	AC=1;AF=0.500;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	0/1:263,145:0.36:408
chr14	20846521	rs2297615	A	T	4635.77	.	AC=1;AF=0.500;AN=2;DB;DP=672;set=Intersection	GT:AD:AF:DP	0/1:422,241:0.36:663
chr14	20846950	rs8022805	C	T	1652.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:127,78:0.38:205
chr14	20848718	rs142580077	ACAATAGTAAGTCT	A	190.73	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:22,7:0.24:29
chr14	20849169	rs2228039	G	A	901.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:84,49:0.37:133
chr14	20849854	rs12433941	G	A	1308.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:104,69:0.40:173
chr14	20849940	rs12436041	G	A	1912.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:135,96:0.42:231
chr14	20850093	rs1713456	C	T	3861.77	.	AC=1;AF=0.500;AN=2;DB;DP=488;set=Intersection	GT:AD:AF:DP	0/1:284,192:0.40:476
chr14	20852029	rs1760904	A	G	3373.77	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:207,156:0.43:363
chr14	20852267	rs2228041	C	T	2194.77	.	AC=1;AF=0.500;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	0/1:272,120:0.31:392
chr14	20852817	rs1760903	G	A	2976.77	.	AC=1;AF=0.500;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	0/1:239,154:0.39:393
chr14	20854734	rs945011	A	G	4407.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:2,171:0.99:173
chr14	20856327	rs76575764	C	T	681.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:55,34:0.38:89
chr14	20857306	rs201527652	T	TA	70.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.529;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=2.291;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.66;ReadPosRankSum=-0.738;SOR=1.049;set=HC	GT:AD:AF:DP	0/1:87,20:0.19:107
chr14	20857600	rs111751048	A	G	829.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:50,38:0.43:88
chr14	20858944	rs4981171	T	C	2613.77	.	AC=1;AF=0.500;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	0/1:229,141:0.38:370
chr14	20859013	rs872072	G	A	10265.77	.	AC=2;AF=1.00;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	1/1:0,372:1.00:372
chr14	20859084	rs872073	T	C	9757.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:2,340:0.99:342
chr14	20859205	rs872074	C	T	4420.77	.	AC=1;AF=0.500;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	0/1:182,203:0.53:385
chr14	20864049	rs2228026	A	G	1311.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:133,74:0.36:207
chr14	20864720	rs77610051	G	A	1247.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:116,67:0.37:183
chr14	20864995	rs75786003	T	C	1165.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:49,36:0.42:85
chr14	20865008	rs4982042	C	G	938.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:41,26:0.39:67
chr14	20869019	.	A	AAATCGTTTTCAGT	372.73	.	AC=1;AF=0.500;AN=2;DP=41;set=Intersection	GT:AD:AF:DP	0/1:31,9:0.23:40
chr14	20871645	rs8009925	C	A	740.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:115,44:0.28:159
chr14	20871846	rs55790286	A	G	922.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:58,40:0.41:98
chr14	20871973	rs2228035	T	C	5052.77	.	AC=1;AF=0.500;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	0/1:133,221:0.62:354
chr14	20873524	rs3762146	A	G	243.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:4,11:0.73:15
chr14	20876253	rs1760897	A	G	5160.77	.	AC=1;AF=0.500;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	0/1:132,223:0.63:355
chr14	20903349	rs1713408	T	C	13844.77	.	AC=2;AF=1.00;AN=2;DB;DP=523;set=Intersection	GT:AD:AF:DP	1/1:0,515:1.00:515
chr14	20903543	rs112366857	A	T	11515.77	.	AC=1;AF=0.500;AN=2;DB;DP=836;set=Intersection	GT:AD:AF:DP	0/1:306,516:0.63:822
chr14	20903906	rs8017603	C	T	2392.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:115,108:0.48:223
chr14	20916249	rs2275008	T	C	5654.77	.	AC=1;AF=0.500;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	0/1:161,248:0.61:409
chr14	20916958	rs938883	T	C	3446.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:115,153:0.57:268
chr14	20916987	rs938882	G	A	2814.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:97,128:0.57:225
chr14	20917442	rs938881	A	T	3283.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:109,155:0.59:264
chr14	20919551	rs3120068	C	T	187.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:23,12:0.34:35
chr14	20919623	rs3120067	T	C	342.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:25,18:0.42:43
chr14	20919667	rs3120066	C	T	175.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:14,12:0.46:26
chr14	20919712	rs3120065	C	T	134.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:9,8:0.47:17
chr14	20920043	rs1320150	C	T	420.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:13,19:0.59:32
chr14	20920250	rs2275007	T	C	1097.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:21,48:0.70:69
chr14	20920340	rs2275006	A	G	639.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:21,29:0.58:50
chr14	20920360	rs3215948	A	AG	781.73	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:18,25:0.58:43
chr14	20920749	rs1878703	C	G	357.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:17,17:0.50:34
chr14	20925154	rs1130409	T	G	12086.77	.	AC=2;AF=1.00;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	1/1:2,435:1.00:437
chr14	20928359	rs35567022	C	A	690.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:79,39:0.33:118
chr14	20978531	rs2319198	G	A	3410.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr14	21024605	rs8014474	G	A	2321.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:77,104:0.57:181
chr14	21024619	rs1243647	A	G	2775.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:88,124:0.58:212
chr14	21024786	rs12590446	A	G	4176.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:117,176:0.60:293
chr14	21026773	rs891297	C	T	1210.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:99,66:0.40:165
chr14	21058902	rs41317318	G	A	2014.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:71,87:0.55:158
chr14	21074683	rs1243595	C	T	2468.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr14	21109141	rs17277522	C	T	9728.77	.	AC=2;AF=1.00;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	1/1:0,352:1.00:352
chr14	21109170	rs11628297	T	A	10561.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:0,381:1.00:381
chr14	21167576	rs3748338	A	T	2041.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:57,91:0.61:148
chr14	21215692	rs10136680	C	T	1046.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:50,50:0.50:100
chr14	21215728	rs10135976	G	C	1751.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:61,81:0.57:142
chr14	21215923	rs34552133	G	T	3784.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:117,173:0.60:290
chr14	21238318	rs3827905	G	A	2517.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:87,116:0.57:203
chr14	21250366	rs7156801	T	C	1628.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr14	21360216	rs2073342	C	G	4632.77	.	AC=1;AF=0.500;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	0/1:148,198:0.57:346
chr14	21360344	rs2233860	G	C	3724.77	.	AC=1;AF=0.500;AN=2;DB;DP=525;set=Intersection	GT:AD:AF:DP	0/1:316,203:0.39:519
chr14	21387994	rs10459477	A	G	5387.77	.	AC=1;AF=0.500;AN=2;DB;DP=467;set=Intersection	GT:AD:AF:DP	0/1:209,252:0.55:461
chr14	21388266	rs3748340	G	C	10373.77	.	AC=1;AF=0.500;AN=2;DB;DP=693;set=Intersection	GT:AD:AF:DP	0/1:240,446:0.65:686
chr14	21388302	rs3748341	G	A	10631.77	.	AC=1;AF=0.500;AN=2;DB;DP=789;set=Intersection	GT:AD:AF:DP	0/1:286,494:0.63:780
chr14	21388397	rs12147654	C	T	3746.77	.	AC=1;AF=0.500;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	0/1:256,185:0.42:441
chr14	21458131	rs2741733	G	A	2077.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr14	21460160	rs2741737	C	T	1542.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr14	21463430	rs2741739	G	T	7634.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr14	21463474	rs2783801	G	A	4669.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr14	21467913	rs2234632	T	G	1023.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:66,54:0.45:120
chr14	21468156	rs2149666	T	G	549.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:56,31:0.36:87
chr14	21469151	rs2234636	T	C	515.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:60,30:0.33:90
chr14	21486054	rs1243444	T	C	8746.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr14	21486137	rs1243445	G	C	10752.77	.	AC=2;AF=1.00;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	1/1:0,391:1.00:391
chr14	21486442	rs1243446	A	G	4255.77	.	AC=1;AF=0.500;AN=2;DB;DP=509;set=Intersection	GT:AD:AF:DP	0/1:292,209:0.42:501
chr14	21488046	rs1243448	G	C	4199.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr14	21490125	rs1243449	A	C	2358.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr14	21499561	rs1243460	G	A	248.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:17,11:0.39:28
chr14	21500121	rs9624	G	T	1993.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:139,104:0.43:243
chr14	21500395	rs1243462	A	G	917.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:95,51:0.35:146
chr14	21500426	rs1754340	G	A	1505.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:134,83:0.38:217
chr14	21503743	rs1243463	G	A	2290.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr14	21504447	rs1243464	A	G	8578.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:2,313:0.99:315
chr14	21511458	rs1263872	G	C	24575.77	.	AC=2;AF=1.00;AN=2;DB;DP=895;set=Intersection	GT:AD:AF:DP	1/1:0,883:1.00:883
chr14	21511497	rs1243469	C	T	19628.77	.	AC=2;AF=1.00;AN=2;DB;DP=743;set=Intersection	GT:AD:AF:DP	1/1:1,732:1.00:733
chr14	21526044	rs12435011	T	C	5524.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr14	21526079	rs12437266	C	T	8389.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr14	21542037	rs4982405	C	T	6644.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr14	21544056	rs7140850	C	T	1066.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr14	21544842	rs11483416	T	TG	7156.73	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr14	21549893	rs7143633	G	C	9014.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr14	21551058	rs1958395	G	A	4798.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr14	21551069	rs1958396	T	C	5010.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr14	21555066	.	GA	G	122.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.584;ClippingRankSum=0.000;DP=145;ExcessHet=3.0103;FS=4.660;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.96;ReadPosRankSum=-1.347;SOR=1.254;set=HC	GT:AD:AF:DP	0/1:95,33:0.26:128
chr14	21555087	rs145744937	AAATC	A	8478.73	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr14	21556963	rs35186993	A	AT	5208.73	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr14	21562560	rs7149011	T	C	6434.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:1,237:1.00:238
chr14	21570273	rs745696	T	C	12786.77	.	AC=2;AF=1.00;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	1/1:0,459:1.00:459
chr14	21570614	rs4982408	A	C	4072.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr14	21571119	rs12432043	A	G	908.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:1,28:0.97:29
chr14	21571208	rs12880628	G	T	2355.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:1,89:0.99:90
chr14	21623010	rs8007993	T	C	4815.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr14	21623053	rs45468597	G	T	2340.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:170,120:0.41:290
chr14	21623290	rs7145814	T	C	10690.77	.	AC=2;AF=1.00;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	1/1:0,398:1.00:398
chr14	21623303	rs45603634	G	T	2582.77	.	AC=1;AF=0.500;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	0/1:243,132:0.35:375
chr14	21623648	rs7161544	G	A	5189.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr14	21623836	rs4982419	G	A	7677.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr14	21624197	rs10135366	T	C	915.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:28,36:0.56:64
chr14	21679756	rs80073450	G	A	3406.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:105,155:0.60:260
chr14	21770730	rs6571751	A	G	7873.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr14	21775816	rs8005773	G	C	1147.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr14	21788088	.	T	C	509.77	.	AC=1;AF=0.500;AN=2;DP=82;set=Intersection	GT:AD:AF:DP	0/1:53,27:0.34:80
chr14	21790040	rs10151259	G	T	3794.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr14	21792811	rs9322965	G	A	8451.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr14	21793236	rs7157052	G	A	5448.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr14	21796784	rs3748361	G	C	1099.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr14	21821821	rs3736824	A	C	773.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.034;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=5.240;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.02;ReadPosRankSum=-0.289;SOR=0.919;set=HC	GT:AD:AF:DP	0/1:105,49:0.32:154
chr14	21825924	rs3762156	T	C	497.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr14	21826718	rs3762157	T	G	1567.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr14	21828520	rs927412	T	A	2415.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr14	21829129	rs3762158	C	G	3541.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr14	21829404	rs1543494	T	C	12154.77	.	AC=2;AF=1.00;AN=2;DB;DP=464;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.77;SOR=0.702;set=HC	GT:AD:AF:DP	1/1:0,454:1.00:454
chr14	21830635	rs1983768	C	T	610.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr14	21831052	rs10138699	T	C	5767.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:1,214:1.00:215
chr14	21831112	rs10146717	G	A	7837.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr14	21831419	rs61746713	C	T	3977.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:131,180:0.58:311
chr14	21831692	rs10139379	T	A	467.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr14	21833147	rs2295866	G	A	2491.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr14	21834815	.	C	CTT	150.75	.	AC=2;AF=1.00;AN=2;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.90;QD=18.84;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr14	21836400	rs8008670	T	C	1961.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr14	21837879	rs17197100	C	G	1665.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:27,64:0.70:91
chr14	21838160	rs2181125	A	G	2161.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr14	21838781	rs4982445	C	T	700.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr14	21859536	rs3762159	T	C	2469.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr14	21860360	rs1998332	G	A	12528.77	.	AC=2;AF=1.00;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	1/1:0,474:1.00:474
chr14	21861211	rs7152833	C	A	918.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr14	21864124	rs10134108	C	A	885.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr14	21869705	rs113076568	C	CT	1082.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.387;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.88;ReadPosRankSum=-1.072;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:14,64:0.82:78
chr14	21871653	rs8022395	C	T	7571.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr14	21874068	rs7155123	G	C	3469.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr14	21882581	.	A	AG	3753.73	.	AC=1;AF=0.500;AN=2;DP=233;set=Intersection	GT:AD:AF:DP	0/1:77,140:0.65:217
chr14	21882649	rs17792659	G	T	1626.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:33,69:0.68:102
chr14	21930361	rs60977608	TA	T	214.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.125;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.399;QD=1.99;ReadPosRankSum=0.956;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:69,39:0.36:108
chr14	21930596	rs10143000	G	A	9071.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	1/1:0,329:1.00:329
chr14	21936762	rs35440295	G	GA	32.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.819;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=1.861;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=3.019;QD=0.22;ReadPosRankSum=0.016;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:125,23:0.16:148
chr14	21944955	rs17516362	G	C	1676.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:142,84:0.37:226
chr14	21945415	rs2282046	A	G	1354.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:129,78:0.38:207
chr14	21950836	rs6571850	T	G	1985.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:53,84:0.61:137
chr14	21955930	rs1061031	G	A	394.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:14,18:0.56:32
chr14	21960408	rs3737050	A	G	952.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.444;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=7.422;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.32;ReadPosRankSum=1.351;SOR=1.919;set=HC	GT:AD:AF:DP	0/1:20,35:0.64:55
chr14	21960424	rs59860769	TG	T	291.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.574;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=2.399;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.94;ReadPosRankSum=0.251;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:52,22:0.30:74
chr14	21960816	rs1060722	T	C	1345.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:34,52:0.60:86
chr14	21960969	rs7617	G	A	5049.77	.	AC=1;AF=0.500;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	0/1:176,226:0.56:402
chr14	21967133	rs1061027	C	A	1897.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:206,103:0.33:309
chr14	21967438	rs3168880	G	A	2217.77	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:200,111:0.36:311
chr14	21967916	rs1139130	A	G	4409.77	.	AC=1;AF=0.500;AN=2;DB;DP=715;set=Intersection	GT:AD:AF:DP	0/1:467,245:0.34:712
chr14	21970154	rs35058794	C	CT	71.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.772;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=7.375;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=1.230;QD=2.66;ReadPosRankSum=0.719;SOR=0.044;set=HC	GT:AD:AF:DP	0/1:16,11:0.41:27
chr14	21971729	rs2242526	C	G	2272.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:185,105:0.36:290
chr14	21993498	rs1263811	G	A	8069.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr14	22037876	rs80231832	C	T	158.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:30,11:0.27:41
chr14	22037905	rs8009501	G	A	1885.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr14	22038210	rs17792766	G	T	3961.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:137,179:0.57:316
chr14	22038450	rs11626669	G	A	1706.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:189,91:0.33:280
chr14	22038562	rs45612332	T	C	3753.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:103,164:0.61:267
chr14	22038659	rs17792778	T	C	8846.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr14	22038915	rs4982462	A	G	6021.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr14	22070146	rs10134340	C	T	3427.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:134,153:0.53:287
chr14	22070509	rs11157069	G	A	5832.77	.	AC=1;AF=0.500;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	0/1:171,255:0.60:426
chr14	22070595	rs35103338	AC	A	5287.73	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:165,169:0.51:334
chr14	22090208	rs8016939	A	G	1951.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr14	22090594	rs1063365	C	G	5515.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr14	22101945	rs4982475	G	A	478.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:26,20:0.43:46
chr14	22102374	rs12894405	T	C	3845.77	.	AC=1;AF=0.500;AN=2;DB;DP=678;set=Intersection	GT:AD:AF:DP	0/1:447,218:0.33:665
chr14	22102592	rs10138694	T	C	875.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.136;ClippingRankSum=0.000;DB;DP=326;ExcessHet=3.0103;FS=14.949;MLEAC=1;MLEAF=0.500;MQ=57.28;MQRankSum=-14.349;QD=2.75;ReadPosRankSum=-0.954;SOR=1.209;set=HC	GT:AD:AF:DP	0/1:275,43:0.14:318
chr14	22102612	rs10138704	T	C	1225.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.913;ClippingRankSum=0.000;DB;DP=321;ExcessHet=3.0103;FS=12.356;MLEAC=1;MLEAF=0.500;MQ=57.62;MQRankSum=-11.049;QD=3.92;ReadPosRankSum=-2.977;SOR=0.954;set=HC	GT:AD:AF:DP	0/1:255,58:0.19:313
chr14	22102800	rs10146821	G	A	1336.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:116,68:0.37:184
chr14	22133416	rs12717305	A	G	15086.77	.	AC=2;AF=1.00;AN=2;DB;DP=579;set=Intersection	GT:AD:AF:DP	1/1:0,573:1.00:573
chr14	22133648	rs2874103	G	A	15839.77	.	AC=2;AF=1.00;AN=2;DB;DP=591;set=Intersection	GT:AD:AF:DP	1/1:0,586:1.00:586
chr14	22133997	rs970382	A	G	6059.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr14	22134018	rs61732411	C	T	3083.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:73,129:0.64:202
chr14	22167296	rs6572018	G	C	9333.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chr14	22217356	rs2075477	G	A	818.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:28,36:0.56:64
chr14	22218051	rs2075478	C	T	852.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:18,36:0.67:54
chr14	22236597	rs766737	A	C	260.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:23,13:0.36:36
chr14	22236756	rs766738	G	C	740.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:101,45:0.31:146
chr14	22236771	rs11623408	C	T	2236.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:36,99:0.73:135
chr14	22236776	rs34634018	C	T	507.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.120;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=0.738;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.79;ReadPosRankSum=0.385;SOR=0.835;set=HC	GT:AD:AF:DP	0/1:99,35:0.26:134
chr14	22237070	rs2075486	C	T	777.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:83,39:0.32:122
chr14	22237127	rs760008	C	T	4956.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr14	22237187	rs4329837	C	T	3124.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:78,137:0.64:215
chr14	22237317	.	G	A	1402.77	.	AC=1;AF=0.500;AN=2;DP=198;set=Intersection	GT:AD:AF:DP	0/1:117,78:0.40:195
chr14	22251145	rs35615365	A	C	482.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:53,24:0.31:77
chr14	22265500	rs34668860	G	A	1675.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr14	22279817	rs7156201	G	A	6050.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr14	22293510	rs2178782	T	C	2053.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr14	22293554	rs35339724	G	GC	4791.73	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr14	22309829	rs61745097	C	G	3685.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:109,174:0.61:283
chr14	22315479	rs7151170	G	A	6972.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr14	22320728	rs2017224	T	C	4113.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr14	22320876	rs2017238	A	G	14679.77	.	AC=2;AF=1.00;AN=2;DB;DP=572;set=Intersection	GT:AD:AF:DP	1/1:2,566:1.00:568
chr14	22321124	rs2017263	T	C	8225.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr14	22321261	rs2017432	C	T	5870.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.724;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=41.93;ReadPosRankSum=-0.923;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:1,139:0.99:140
chr14	22321269	rs2072609	T	C	5545.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.842;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=45.09;ReadPosRankSum=-1.112;SOR=0.824;set=HC	GT:AD:AF:DP	1/1:1,122:0.99:123
chr14	22321331	rs12892111	G	A	1295.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr14	22322168	rs760003	A	G	1789.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr14	22322369	rs11626323	T	C	4316.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:1,161:0.99:162
chr14	22322411	rs11629404	G	C	3819.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:1,133:0.99:134
chr14	22322523	rs11629446	G	A	3100.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr14	22322563	rs11620886	C	T	5618.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr14	22322690	rs12878216	G	A	14748.77	.	AC=2;AF=1.00;AN=2;DB;DP=557;set=Intersection	GT:AD:AF:DP	1/1:0,549:1.00:549
chr14	22322794	rs12879611	C	T	4999.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr14	22322856	rs12884453	T	C	1797.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr14	22392250	rs17182937	C	T	380.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:32,20:0.38:52
chr14	22392283	rs28501628	G	A	507.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:68,30:0.31:98
chr14	22392304	rs34365759	G	A	489.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.690;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=0.763;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.86;ReadPosRankSum=1.969;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:93,34:0.27:127
chr14	22392366	rs12437316	C	T	587.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:108,38:0.26:146
chr14	22392499	rs12435124	T	C	640.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:107,40:0.27:147
chr14	22392626	rs10140810	A	C	1316.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:143,70:0.33:213
chr14	22392703	rs8021861	G	C	1773.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:204,97:0.32:301
chr14	22392807	rs8008040	T	C	1609.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:133,84:0.39:217
chr14	22409532	rs3045130	TC	T	192.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.273;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=1.199;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.47;ReadPosRankSum=2.237;SOR=0.881;set=HC	GT:AD:AF:DP	0/1:61,17:0.22:78
chr14	22409571	rs2178779	A	G	868.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:79,48:0.38:127
chr14	22446888	rs2075483	C	T	1125.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:81,55:0.40:136
chr14	22447248	rs2075484	A	G	6341.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.383;ClippingRankSum=0.000;DB;DP=595;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.77;ReadPosRankSum=-1.156;SOR=0.642;set=HC	GT:AD:AF:DP	0/1:405,184:0.31:589
chr14	22447251	rs2075485	G	A	6366.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.561;ClippingRankSum=0.000;DB;DP=594;ExcessHet=3.0103;FS=0.568;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.83;ReadPosRankSum=-0.872;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:407,181:0.31:588
chr14	22470693	rs5807105	T	TA	6448.73	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr14	22470913	rs34215246	CT	C	181.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.902;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.56;ReadPosRankSum=0.465;SOR=0.789;set=HC	GT:AD:AF:DP	0/1:34,17:0.33:51
chr14	22471333	rs3811327	C	T	805.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:36,34:0.49:70
chr14	22509188	rs4982545	T	C	2440.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr14	22534039	rs111573054	C	T	9803.77	.	AC=2;AF=1.00;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	1/1:2,369:0.99:371
chr14	22573582	rs2075498	A	C	8279.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chr14	22573824	rs112427980	T	TA	1330.73	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=-1.336;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=3.832;MLEAC=2;MLEAF=1.000;MQ=67.61;MQRankSum=4.360;QD=22.18;ReadPosRankSum=0.179;SOR=0.866;set=HC	GT:AD:AF:DP	1/1:2,58:0.97:60
chr14	22573825	rs11408894	T	A	2258.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=67.70;QD=34.22;SOR=1.092;set=HC	GT:AD:AF:DP	1/1:1,65:0.98:66
chr14	22573825	.	TA	AA	1615	.	AC=1;AF=0.500;AN=2;FR=1.0000,1.0000;HP=7;HapScore=1;MGOF=3;MMLQ=28;MQ=68.16;NF=25,18;NR=38,34;PP=1615,882;QD=26.1868446436;SC=GACTCTTTTTTAAAAAAACAG;SbPval=0.61;Source=Platypus;TC=65;TCF=27;TCR=38;TR=63,52;WE=22573833;WS=22573814;set=Platypus	GT:AD:AF:DP	0/1:2,63:0.97:65
chr14	22573825	.	TA	TAA	1615	.	AC=1;AF=0.500;AN=2;FR=1.0000,1.0000;HP=7;HapScore=1;MGOF=3;MMLQ=28;MQ=68.16;NF=25,18;NR=38,34;PP=1615,882;QD=26.1868446436;SC=GACTCTTTTTTAAAAAAACAG;SbPval=0.61;Source=Platypus;TC=65;TCF=27;TCR=38;TR=63,52;WE=22573833;WS=22573814;set=Platypus	GT:AD:AF:DP	0/1:11,52:0.83:63
chr14	22580570	rs1040301	C	G	3384.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr14	22580623	rs1040302	G	T	4213.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.568;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=28.28;ReadPosRankSum=0.169;SOR=1.500;set=HC	GT:AD:AF:DP	1/1:2,147:0.99:149
chr14	22591984	rs200083527	G	GC	2030.73	.	AC=1;AF=0.500;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	0/1:222,98:0.31:320
chr14	22600490	rs8014493	C	T	3951.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:138,182:0.57:320
chr14	22600863	rs3811291	G	A	2689.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:189,135:0.42:324
chr14	22670643	rs2075495	G	A	1217.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:80,61:0.43:141
chr14	22689740	.	CAA	C	126.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.878;ClippingRankSum=0.000;DP=21;ExcessHet=3.0103;FS=2.702;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.34;ReadPosRankSum=0.909;SOR=0.141;set=HC	GT:AD:AF:DP	0/1:12,8:0.40:20
chr14	22690209	rs2272551	A	C	890.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:91,49:0.35:140
chr14	22694777	rs2242544	A	G	1280.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:86,59:0.41:145
chr14	22694926	rs2075496	C	T	1682.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:150,89:0.37:239
chr14	22695058	rs186036960	T	A	3806.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:91,163:0.64:254
chr14	22695084	rs4982579	C	T	1564.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:174,88:0.34:262
chr14	22695128	rs12889091	A	G	948.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.982;ClippingRankSum=0.000;DB;DP=241;ExcessHet=3.0103;FS=1.142;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.97;ReadPosRankSum=1.225;SOR=0.574;set=HC	GT:AD:AF:DP	0/1:176,63:0.26:239
chr14	22733490	rs7147374	A	G	236.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:9,9:0.50:18
chr14	22733509	rs190928324	A	T	385.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:10,17:0.63:27
chr14	22733655	rs7145658	G	C	2698.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.572;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.14;ReadPosRankSum=-1.514;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:64,70:0.52:134
chr14	22733655	.	GCT	CCC	2044	.	AC=1;AF=0.500;AN=2;BRF=0.39;FR=0.5000;HP=1;HapScore=1;MGOF=12;MMLQ=24;MQ=60.0;NF=31;NR=26;PP=2044;QD=36.7976820151;SC=TGAGCACTCTGCTGCTGCTCC;SbPval=0.65;Source=Platypus;TC=94;TCF=49;TCR=45;TR=57;WE=22733665;WS=22733645;set=Platypus	GT:AD:AF:DP	1/0:37,57:0.61:94
chr14	22733657	rs7152255	T	C	2698.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.394;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.29;ReadPosRankSum=-1.286;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:64,69:0.52:133
chr14	22733694	rs7147116	C	G	1642.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:60,72:0.55:132
chr14	22733758	rs7145836	G	T	1373.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:46,63:0.58:109
chr14	22733893	rs12589879	C	T	314.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:8,14:0.64:22
chr14	22745836	rs148970619	T	TGAGGA	975.73	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:12,23:0.66:35
chr14	22749282	rs2075503	G	C	3360.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:107,139:0.57:246
chr14	22783027	rs66584005	TACA	T	4496.73	.	AC=1;AF=0.500;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	0/1:289,129:0.31:418
chr14	22924194	rs2242545	G	A	1558.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:129,78:0.38:207
chr14	22924531	rs760020	C	G	411.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:23,17:0.42:40
chr14	22925724	rs139871530	C	T	6279.77	.	AC=1;AF=0.500;AN=2;DB;DP=523;set=Intersection	GT:AD:AF:DP	0/1:228,293:0.56:521
chr14	22930038	rs1882705	C	T	1115.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:153,65:0.30:218
chr14	22942890	rs2254272	G	T	820.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:68,44:0.39:112
chr14	22947814	rs227858	G	A	3742.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr14	22948471	rs227859	T	C	11492.77	.	AC=2;AF=1.00;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	1/1:0,420:1.00:420
chr14	22952088	rs227861	G	A	3806.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:141,172:0.55:313
chr14	22957488	rs1483971	G	T	2600.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:82,113:0.58:195
chr14	22958350	rs3833810	ATGCC	A	1638.73	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:55,44:0.44:99
chr14	22961854	rs17255862	A	G	3088.77	.	AC=1;AF=0.500;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	0/1:236,162:0.41:398
chr14	22963632	rs11372266	G	GC	745.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr14	22964840	rs137998884	T	TG	4764.73	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr14	22965118	rs11334443	TC	T	2075.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr14	22965144	rs11334442	AC	A	1504.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr14	22972622	rs226990	A	G	3159.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr14	22972742	rs2170810	G	A	9321.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:0,348:1.00:348
chr14	22972783	rs5807141	AC	A	8410.73	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:2,321:0.99:323
chr14	22972815	rs2170811	C	T	6732.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr14	22972844	rs5020726	A	G	4189.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr14	22973923	rs4343183	T	C	830.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr14	22973960	rs4343184	T	C	1678.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.97;SOR=2.780;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr14	22973960	.	TGGAC	CGGAA,CGGAC	402	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.37;FR=0.5000,0.5000;HP=2;HapScore=2;MGOF=34;MMLQ=22;MQ=60.0;NF=14,32;NR=6,9;PP=402,332;QD=22.7733937431;SC=CACTCCAGCCTGGACAACAAA;SbPval=0.28;Source=Platypus;TC=41;TCF=32;TCR=9;TR=20,41;WE=22973972;WS=22973950;set=Platypus	GT:AF:DP	0/1:0.49:41
chr14	22973964	rs4536381	C	A	580.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.106;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=5.699;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.91;ReadPosRankSum=-1.212;SOR=0.185;set=HC	GT:AD:AF:DP	0/1:20,25:0.56:45
chr14	22974041	rs4343185	T	G	5577.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;MQ=60.16;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr14	22974150	rs11324184	TC	T	10396.73	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chr14	22974256	rs3811207	A	C	2842.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr14	22975700	rs969914	T	G	7964.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:1,295:1.00:296
chr14	22975728	rs3794450	G	A	5562.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr14	22975755	rs3794451	T	C	5059.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.17;QD=39.22;SOR=1.335;set=HC	GT:AD:AF:DP	1/1:0,129:1.00:129
chr14	22975756	.	G	GCACACA,GCACACACACACACACA	4014.73	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;DP=126;set=Intersection	GT:AF:DP	1/2:0.52,0.48:81
chr14	22976559	rs1872160	A	T	2212.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr14	22976790	rs170543	C	T	726.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr14	22977669	rs1010116	G	A	3034.77	.	AC=1;AF=0.500;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	0/1:222,157:0.41:379
chr14	22978335	rs226997	C	T	3207.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr14	22978451	rs11443893	G	GC	3089.73	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr14	22978516	rs226998	G	A	1061.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr14	22979847	rs5807144	G	GA	817.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.001;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=3.234;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.20;ReadPosRankSum=1.302;SOR=1.371;set=HC	GT:AD:AF:DP	0/1:15,58:0.79:73
chr14	22982069	rs11444527	A	AG	919.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr14	22984499	rs227027	C	T	2455.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr14	22984500	rs144430862	G	GGTT	2446.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr14	22985463	rs227029	G	A	2621.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr14	22985487	rs11453171	A	AC	2170.73	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr14	22988022	rs227009	C	G	423.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:30,22:0.42:52
chr14	22988748	rs227010	G	A	1221.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr14	22990930	rs11380759	A	AT	7936.73	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr14	22993278	rs5807151	A	AG	2971.73	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr14	22993491	rs227015	A	G	598.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:35,28:0.44:63
chr14	22994289	rs74038934	C	T	2572.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:109,121:0.53:230
chr14	22994810	rs33919257	T	TC	210.77	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr14	22995752	rs74038935	C	A	1869.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:52,83:0.61:135
chr14	22997408	rs74038936	A	C	3377.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:117,153:0.57:270
chr14	22997524	rs227024	A	G	9515.77	.	AC=2;AF=1.00;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	1/1:0,351:1.00:351
chr14	22998590	rs5807161	AG	A	5472.73	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr14	22998619	rs5807162	AC	A	4400.73	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr14	22999179	rs11412657	T	TC	6669.73	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr14	22999202	rs11412658	A	AG	8300.73	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr14	23000062	rs227003	T	C	8783.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr14	23000185	rs227004	C	T	7724.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr14	23001388	rs227006	T	A	2348.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr14	23001613	.	T	TTATCAA	2575.73	.	AC=1;AF=0.500;AN=2;DP=152;set=Intersection	GT:AD:AF:DP	0/1:66,67:0.50:133
chr14	23002265	rs11289756	GC	G	1874.73	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr14	23005041	rs5807163	A	AG	14354.73	.	AC=2;AF=1.00;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	1/1:0,385:1.00:385
chr14	23006663	rs11396434	G	GC	2204.73	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr14	23018665	rs1263653	C	G	1038.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:53,53:0.50:106
chr14	23019657	rs1263658	C	G	1338.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:32,56:0.64:88
chr14	23020489	rs371247	T	C	3262.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr14	23020638	rs15795	T	C	10079.77	.	AC=2;AF=1.00;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	1/1:0,371:1.00:371
chr14	23020688	rs11462449	G	GC	15584.73	.	AC=2;AF=1.00;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	1/1:0,418:1.00:418
chr14	23020820	rs5807168	G	GC	18002.73	.	AC=2;AF=1.00;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	1/1:0,395:1.00:395
chr14	23020825	rs3699	G	C	18121.77	.	AC=2;AF=1.00;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	1/1:0,406:1.00:406
chr14	23020919	rs3700	C	T	4378.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:137,196:0.59:333
chr14	23020970	rs3702	G	T	2942.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:131,138:0.51:269
chr14	23021039	rs9125	G	A	2682.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:118,130:0.52:248
chr14	23025758	rs10873025	G	A	55.80	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.16;ReadPosRankSum=0.524;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:1,4:0.80:5
chr14	23025932	rs12888861	A	T	222.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:15,12:0.44:27
chr14	23026369	rs33982989	C	CG	881.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr14	23027743	rs4982639	G	C	3058.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:69,125:0.64:194
chr14	23072194	rs8023110	G	T	733.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:10,29:0.74:39
chr14	23102969	rs1753430	G	A	2127.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:70,96:0.58:166
chr14	23235697	rs1957373	C	T	3306.77	.	AC=1;AF=0.500;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	0/1:255,165:0.39:420
chr14	23235808	rs1957374	G	A	3962.77	.	AC=1;AF=0.500;AN=2;DB;DP=583;set=Intersection	GT:AD:AF:DP	0/1:354,217:0.38:571
chr14	23236524	rs8572	C	T	10082.77	.	AC=2;AF=1.00;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	1/1:1,384:1.00:385
chr14	23239512	rs2075846	A	G	3709.77	.	AC=1;AF=0.500;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	0/1:262,188:0.42:450
chr14	23239880	rs1957502	G	A	2674.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr14	23240328	rs8786	T	A	5090.77	.	AC=1;AF=0.500;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	0/1:140,223:0.61:363
chr14	23240713	rs148216086	T	TAGC	12997.73	.	AC=1;AF=0.500;AN=2;DB;DP=765;set=Intersection	GT:AD:AF:DP	0/1:325,334:0.51:659
chr14	23242828	rs1061040	T	C	5829.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr14	23244929	rs3751485	A	T	454.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:28,22:0.44:50
chr14	23245301	rs3850290	T	C	3630.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr14	23249292	rs11568429	A	G	1210.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:122,57:0.32:179
chr14	23282712	.	G	A	927.77	.	AC=1;AF=0.500;AN=2;DP=75;set=Intersection	GT:AD:AF:DP	0/1:30,42:0.58:72
chr14	23286343	rs10130537	T	A	1193.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.48;QD=44.21;SOR=2.753;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr14	23286350	rs111507412	T	TATTTTTTA	1226.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.90;QD=47.18;SOR=2.670;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr14	23286528	rs150800938	TTTTTA	T	3224.73	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr14	23299135	rs1135641	G	T	2095.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:72,96:0.57:168
chr14	23299286	rs4982685	T	C	5192.77	.	AC=1;AF=0.500;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	0/1:146,233:0.61:379
chr14	23300095	rs9646148	T	G	4244.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:107,182:0.63:289
chr14	23302585	rs12050397	T	A	1314.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:31,59:0.66:90
chr14	23306048	rs1042703	C	T	9024.77	.	AC=1;AF=0.500;AN=2;DB;DP=683;set=Intersection	GT:AD:AF:DP	0/1:247,423:0.63:670
chr14	23311042	rs17879412	CT	C	1646.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:36,43:0.54:79
chr14	23311044	rs57542488	T	C	1655.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:36,43:0.54:79
chr14	23312869	rs2236305	G	T	2868.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.047;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=1.954;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.92;ReadPosRankSum=-1.058;SOR=1.051;set=HC	GT:AD:AF:DP	0/1:72,72:0.50:144
chr14	23312875	rs2236306	G	C	3085.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.027;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=0.717;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.94;ReadPosRankSum=-0.593;SOR=0.798;set=HC	GT:AD:AF:DP	0/1:85,87:0.51:172
chr14	23312923	rs2236307	T	C	6215.77	.	AC=1;AF=0.500;AN=2;DB;DP=490;MQ=60.02;set=Intersection	GT:AD:AF:DP	0/1:198,279:0.58:477
chr14	23314675	rs911912	C	T	2063.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr14	23315260	rs56258625	G	A	609.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:19,29:0.60:48
chr14	23315331	rs743257	T	C	154.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:14,9:0.39:23
chr14	23342735	.	C	CT	118.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.286;ClippingRankSum=0.000;DP=325;ExcessHet=3.0103;FS=3.942;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.000;QD=0.54;ReadPosRankSum=-1.402;SOR=0.387;set=HC	GT:AD:AF:DP	0/1:173,48:0.22:221
chr14	23354066	rs8014119	G	C	2626.77	.	AC=1;AF=0.500;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	0/1:288,145:0.33:433
chr14	23371055	rs1127066	G	C	6977.77	.	AC=1;AF=0.500;AN=2;DB;DP=545;set=Intersection	GT:AD:AF:DP	0/1:227,302:0.57:529
chr14	23371268	rs56708790	A	G	7147.77	.	AC=1;AF=0.500;AN=2;DB;DP=783;set=Intersection	GT:AD:AF:DP	0/1:329,332:0.50:661
chr14	23373986	rs1043209	G	A	2032.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:53,88:0.62:141
chr14	23374435	rs2295680	G	A	3994.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:123,172:0.58:295
chr14	23374862	rs2295682	C	T	4707.77	.	AC=1;AF=0.500;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	0/1:137,220:0.62:357
chr14	23391533	rs144411999	C	CACAA	2170.73	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:42,55:0.57:97
chr14	23391913	rs8007089	T	C	3411.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr14	23394007	rs1956880	T	C	1129.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:19,41:0.68:60
chr14	23394069	rs1956881	A	C	1248.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:25,50:0.67:75
chr14	23394375	rs147925144	TAA	T	391.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.909;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.55;ReadPosRankSum=-0.995;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:23,18:0.44:41
chr14	23396680	rs12589539	T	C	529.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:15,23:0.61:38
chr14	23396916	.	CTT	C	149.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.471;ClippingRankSum=-0.000;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=-0.566;QD=10.70;ReadPosRankSum=-0.374;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:6,8:0.57:14
chr14	23415990	rs11414358	C	CT	216.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.097;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=1.489;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=0.000;QD=4.33;ReadPosRankSum=0.956;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:26,24:0.48:50
chr14	23416252	rs2008951	C	G	881.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:25,42:0.63:67
chr14	23424186	rs2016392	A	G	2778.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr14	23426182	rs2273626	C	A	5255.77	.	AC=1;AF=0.500;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	0/1:128,243:0.65:371
chr14	23456315	rs1043675	T	C	550.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:42,28:0.40:70
chr14	23459156	rs11624528	G	A	1909.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:141,94:0.40:235
chr14	23496860	.	GA	G	245.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.475;ClippingRankSum=0.000;DP=258;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.859;QD=1.02;ReadPosRankSum=0.159;SOR=0.605;set=HC	GT:AD:AF:DP	0/1:193,47:0.20:240
chr14	23504238	rs4144360	G	A	846.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr14	23511357	rs4981456	G	C	665.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:21,25:0.54:46
chr14	23512343	rs57362684	A	G	1158.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:43,50:0.54:93
chr14	23518791	rs2295689	A	G	1568.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.644;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=3.082;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.69;ReadPosRankSum=-1.591;SOR=0.398;set=HC	GT:AD:AF:DP	0/1:30,64:0.68:94
chr14	23523244	rs11625828	C	G	1948.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:54,81:0.60:135
chr14	23524137	rs11418548	T	TG	857.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.476;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=3.065;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=0.976;QD=11.00;ReadPosRankSum=-0.976;SOR=1.135;set=HC	GT:AD:AF:DP	0/1:37,41:0.53:78
chr14	23530908	rs56402910	C	T	1112.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:34,49:0.59:83
chr14	23532865	rs57315948	A	G	1058.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:37,49:0.57:86
chr14	23548783	rs148403158	A	AGAACGT	5698.73	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:92,140:0.60:232
chr14	23549285	rs3751501	G	A	1661.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:52,74:0.59:126
chr14	23549319	rs1885097	A	G	1753.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:48,80:0.62:128
chr14	23549379	rs941719	C	G	5220.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.11;SOR=0.933;set=HC	GT:AD:AF:DP	1/1:0,137:1.00:137
chr14	23549379	.	CGGGG	GGGGG,GGGGT	974	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.39;FR=0.5000,0.5000;HP=6;HapScore=2;MGOF=12;MMLQ=27;MQ=60.0;NF=55,33;NR=42,27;PP=530,974;QD=5.82238363451;SC=ATGAGGACAGCGGGGGCTGGG;SbPval=0.53;Source=Platypus;TC=97;TCF=55;TCR=42;TR=97,60;WE=23549391;WS=23549369;set=Platypus	GT:AF:DP	0/1:1.00:97
chr14	23549383	rs45510791	G	T	1910.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.355;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.65;ReadPosRankSum=1.183;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:55,85:0.61:140
chr14	23549785	rs3811182	T	C	6892.77	.	AC=1;AF=0.500;AN=2;DB;DP=547;set=Intersection	GT:AD:AF:DP	0/1:231,312:0.57:543
chr14	23549878	rs3841035	TTCC	T	5152.73	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:96,135:0.58:231
chr14	23550126	rs4982727	T	C	1251.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:30,50:0.62:80
chr14	23550887	rs717984	C	A	3329.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:148,158:0.52:306
chr14	23559950	rs79721426	A	G	262.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:5,11:0.69:16
chr14	23559973	rs8020434	T	C	48.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:6,3:0.33:9
chr14	23562832	rs2273395	A	T	1839.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:46,78:0.63:124
chr14	23571671	rs4444236	A	T	12887.77	.	AC=2;AF=1.00;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	1/1:0,471:1.00:471
chr14	23571771	rs2236136	C	G	3427.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:92,141:0.61:233
chr14	23572776	rs148655160	T	TAAAAC,TAAAACAAAAC	2527.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=63;set=Intersection	GT:AF:DP	1/2:0.43,0.57:54
chr14	23574095	rs142154188	GGCAGCAGCAGCAGCA	G	1232.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.243;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=3.291;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.12;ReadPosRankSum=-1.269;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:39,33:0.46:72
chr14	23574112	rs57331962	CA	C	1381.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.384;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=3.198;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.67;ReadPosRankSum=0.569;SOR=0.391;set=HC	GT:AD:AF:DP	0/1:35,39:0.53:74
chr14	23574114	rs55686792	GCA	G	1382.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.581;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=3.198;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.69;ReadPosRankSum=0.661;SOR=0.391;set=HC	GT:AD:AF:DP	0/1:35,39:0.53:74
chr14	23586795	rs55722931	G	A	2941.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:84,132:0.61:216
chr14	23596320	rs761874	A	G	774.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:23,34:0.60:57
chr14	23598952	rs7157021	A	G	3769.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:128,182:0.59:310
chr14	23600662	rs12436035	G	T	1819.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:67,86:0.56:153
chr14	23607246	rs1015089	C	A	1998.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:59,93:0.61:152
chr14	23607271	rs1569951	C	T	1199.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:93,61:0.40:154
chr14	23609916	rs10151002	A	T	725.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr14	23612489	rs2273394	C	G	971.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr14	23624583	rs8011016	C	T	2019.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr14	23727639	.	T	C	733.77	.	AC=1;AF=0.500;AN=2;DP=51;set=Intersection	GT:AD:AF:DP	0/1:18,32:0.64:50
chr14	23727902	rs35193725	CTT	C	1247.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.188;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=10.821;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.60;ReadPosRankSum=0.919;SOR=1.444;set=HC	GT:AD:AF:DP	0/1:33,47:0.59:80
chr14	23727919	rs8015556	T	C	1488.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.057;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=7.591;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.38;ReadPosRankSum=1.508;SOR=1.514;set=HC	GT:AD:AF:DP	0/1:34,47:0.58:81
chr14	23729750	rs2064483	G	A	704.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:109,44:0.29:153
chr14	23732091	rs11625337	AT	GC	5626.77	.	AC=1;AF=0.500;AN=2;DB;DP=519;JOINED;set=Intersection	GT:AD:AF:DP	0/1:349,161:0.32:510
chr14	23732300	rs34260336	G	GT	284.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.412;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=7.291;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.90;ReadPosRankSum=-0.802;SOR=0.093;set=HC	GT:AD:AF:DP	0/1:45,28:0.38:73
chr14	23744800	rs148005528	ACAT	A	1210.73	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:60,36:0.38:96
chr14	23744826	rs67447855	TTCC	T	1696.73	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:52,47:0.47:99
chr14	23745533	rs10131813	C	T	1573.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:115,78:0.40:193
chr14	23777099	rs2231301	G	A	2653.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:191,129:0.40:320
chr14	23777374	rs910332	A	G	3934.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr14	23789096	rs10640563	C	CTT	7776.73	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr14	23792019	rs8020117	T	C	1435.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr14	23794543	.	G	GA	88.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.140;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.86;ReadPosRankSum=-1.045;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:22,9:0.29:31
chr14	23816998	rs12896494	T	C	1378.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:59,59:0.50:118
chr14	23844979	rs79877597	C	A	7269.77	.	AC=1;AF=0.500;AN=2;DB;DP=568;set=Intersection	GT:AD:AF:DP	0/1:230,330:0.59:560
chr14	23845244	rs3811178	G	A	599.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:18,24:0.57:42
chr14	23848311	rs723840	C	T	4771.77	.	AC=1;AF=0.500;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	0/1:177,228:0.56:405
chr14	23851400	rs453361	C	T	237.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:15,12:0.44:27
chr14	23851874	rs178636	A	G	2360.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:42,92:0.69:134
chr14	23854155	rs8004990	G	A	1077.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:30,49:0.62:79
chr14	23854324	rs178638	A	G	832.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:22,40:0.65:62
chr14	23854352	rs178639	A	T	406.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:12,18:0.60:30
chr14	23855320	rs382872	G	A	8537.77	.	AC=1;AF=0.500;AN=2;DB;DP=671;set=Intersection	GT:AD:AF:DP	0/1:265,403:0.60:668
chr14	23855426	rs45520434	C	T	2586.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:105,122:0.54:227
chr14	23855478	rs396024	C	G	1322.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:56,52:0.48:108
chr14	23855569	rs178640	A	G	2114.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:56,95:0.63:151
chr14	23856896	rs178642	A	G	9017.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.901;ClippingRankSum=0.000;DB;DP=717;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.77;ReadPosRankSum=2.452;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:300,406:0.58:706
chr14	23858232	rs451794	C	T	1347.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.655;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=3.253;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=0.923;QD=15.86;ReadPosRankSum=1.057;SOR=0.370;set=HC	GT:AD:AF:DP	0/1:25,60:0.71:85
chr14	23858271	rs368353621	AGG	A	1321.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.898;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=18.353;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=0.715;QD=28.12;ReadPosRankSum=-1.743;SOR=0.014;set=HC	GT:AD:AF:DP	0/1:8,39:0.83:47
chr14	23861811	rs365990	A	G	2146.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.747;ClippingRankSum=0.000;DB;DP=234;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.000;QD=9.89;ReadPosRankSum=1.624;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:107,110:0.51:217
chr14	23865885	rs452036	G	A	7503.77	.	AC=1;AF=0.500;AN=2;DB;DP=581;set=Intersection	GT:AD:AF:DP	0/1:210,363:0.63:573
chr14	23866713	rs412768	A	G	945.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:32,44:0.58:76
chr14	23872666	rs434273	T	C	2974.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:103,143:0.58:246
chr14	23873092	rs388914	G	A	2062.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:52,85:0.62:137
chr14	23874117	rs440466	T	C	8835.77	.	AC=1;AF=0.500;AN=2;DB;DP=698;set=Intersection	GT:AD:AF:DP	0/1:269,415:0.61:684
chr14	23874523	rs2277474	C	T	4655.77	.	AC=1;AF=0.500;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	0/1:157,215:0.58:372
chr14	23881920	rs12147570	G	T	486.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:5,20:0.80:25
chr14	23882144	rs2284651	T	C	1547.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:58,76:0.57:134
chr14	23882186	rs7149517	T	G	1203.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:40,54:0.57:94
chr14	23883184	rs3729833	C	T	3738.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:141,169:0.55:310
chr14	23885997	rs3729828	G	A	532.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:20,21:0.51:41
chr14	23886264	rs3729825	C	T	6566.77	.	AC=1;AF=0.500;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	0/1:171,281:0.62:452
chr14	23887110	rs45618635	G	A	697.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:66,37:0.36:103
chr14	23887134	rs45489294	G	T	2030.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:53,91:0.63:144
chr14	23887645	rs7159367	T	C	707.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:30,36:0.55:66
chr14	23888323	rs34598192	T	TG	5914.73	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:150,173:0.54:323
chr14	23888665	rs2277475	A	T	1599.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:34,71:0.68:105
chr14	23892645	rs10545532	AAC	A,AACACAC	1797.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.206;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=1.710;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.94;MQRankSum=-0.328;QD=21.66;ReadPosRankSum=1.097;SOR=1.437;set=HC	GT:AD:AF:DP	1/2:10,34,39:0.41,0.47:83
chr14	23892888	rs7157716	A	G	4037.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:124,176:0.59:300
chr14	23899027	rs735711	C	T	1589.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:51,73:0.59:124
chr14	23902753	rs2069540	G	A	898.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:116,52:0.31:168
chr14	23924704	rs2331984	G	A	532.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr14	23924744	.	T	TAA	172.75	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.196;ClippingRankSum=0.000;DP=16;ExcessHet=3.0103;FS=4.973;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.40;ReadPosRankSum=0.216;SOR=3.258;set=HC	GT:AD:AF:DP	0/1:2,10:0.83:12
chr14	23924767	rs60519724	AT	A	634.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.67;SOR=0.997;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr14	23924818	rs8005802	C	A	2626.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr14	23924830	rs10131038	A	G	2709.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr14	23938813	rs8015781	A	G	5295.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr14	23939927	rs5807217	GT	G	174.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.999;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=3.096;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.74;ReadPosRankSum=1.234;SOR=2.049;set=HC	GT:AD:AF:DP	0/1:5,15:0.75:20
chr14	23940081	rs1028587	A	G	6721.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.36;SOR=1.058;set=HC	GT:AD:AF:DP	1/1:0,145:1.00:145
chr14	23940086	rs1028588	A	G	6841.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.31;SOR=1.149;set=HC	GT:AD:AF:DP	1/1:0,151:1.00:151
chr14	23940089	rs3215682	AC	A	7071.73	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr14	23944505	rs2236260	G	A	10902.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.59;SOR=1.161;set=HC	GT:AD:AF:DP	1/1:0,256:1.00:256
chr14	23944514	rs2236261	C	A	10415.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.09;SOR=1.288;set=HC	GT:AD:AF:DP	1/1:0,226:1.00:226
chr14	23945366	rs2295706	A	G	8700.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr14	23947374	rs1956950	G	A	771.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr14	23991105	rs223122	G	A	294.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:39,18:0.32:57
chr14	23992296	rs223123	T	C	635.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:19,27:0.59:46
chr14	23992742	rs223124	T	G	5935.77	.	AC=1;AF=0.500;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	0/1:162,276:0.63:438
chr14	23994517	rs4982766	A	G	3957.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:110,172:0.61:282
chr14	23996772	rs8016202	A	G	4520.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:115,204:0.64:319
chr14	23999306	rs3742488	G	A	478.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:85,29:0.25:114
chr14	23999520	rs7150257	A	G	3934.77	.	AC=1;AF=0.500;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	0/1:141,176:0.56:317
chr14	23999627	rs35092523	TA	T	6176.73	.	AC=1;AF=0.500;AN=2;DB;DP=349;MQ=60.03;set=Intersection	GT:AD:AF:DP	0/1:139,197:0.59:336
chr14	24000990	.	C	CT	167.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.744;ClippingRankSum=0.000;DP=199;ExcessHet=3.0103;FS=2.039;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=0.000;QD=1.19;ReadPosRankSum=0.311;SOR=0.935;set=HC	GT:AD:AF:DP	0/1:111,30:0.21:141
chr14	24002459	rs142802231	GGAGGA	G	1164.73	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:9,30:0.77:39
chr14	24002887	rs3742489	G	T	9256.77	.	AC=1;AF=0.500;AN=2;DB;DP=625;set=Intersection	GT:AD:AF:DP	0/1:213,405:0.66:618
chr14	24026493	rs34015250	A	G	2602.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:88,122:0.58:210
chr14	24408679	rs77147457	G	A	3328.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:87,148:0.63:235
chr14	24408866	rs1885810	G	A	2795.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:58,116:0.67:174
chr14	24410092	rs8003627	G	A	377.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:9,15:0.62:24
chr14	24410262	rs58941536	C	G	2561.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:68,118:0.63:186
chr14	24410417	rs57901513	A	G	789.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:30,37:0.55:67
chr14	24422733	rs1951736	A	G	205.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:7,10:0.59:17
chr14	24422778	rs3049857	C	CGCTTTGA	391.73	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:11,9:0.45:20
chr14	24422795	rs1951737	A	G	251.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:15,11:0.42:26
chr14	24422915	rs78299733	T	G	1831.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:91,84:0.48:175
chr14	24422936	rs112883733	C	G	2371.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:133,120:0.47:253
chr14	24422946	rs113357631	A	ACT	4306.73	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:148,124:0.46:272
chr14	24422995	rs4457918	T	G	3069.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:175,150:0.46:325
chr14	24423007	rs17099455	G	A	2961.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:175,148:0.46:323
chr14	24423090	rs2273944	A	G	1253.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:71,56:0.44:127
chr14	24424367	rs12147221	G	A	2272.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:75,93:0.55:168
chr14	24429093	rs11158474	A	C	956.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:162,57:0.26:219
chr14	24429298	rs3742492	C	G	1472.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:29,57:0.66:86
chr14	24429334	rs3742493	G	A	990.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:13,38:0.75:51
chr14	24435672	rs200547090	A	C	3523.77	.	AC=1;AF=0.500;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	0/1:194,158:0.45:352
chr14	24436511	rs200393732	T	C	1401.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:56,69:0.55:125
chr14	24437922	rs61999779	A	C	4309.77	.	AC=1;AF=0.500;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	0/1:190,213:0.53:403
chr14	24439151	rs61999781	C	T	737.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:14,32:0.70:46
chr14	24439455	rs117274371	A	T	198.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.529;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=13.320;MLEAC=1;MLEAF=0.500;MQ=49.71;MQRankSum=-2.260;QD=1.76;ReadPosRankSum=-1.630;SOR=1.516;set=HC	GT:AD:AF:DP	0/1:94,19:0.17:113
chr14	24439588	rs4048584	G	A	441.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:12,20:0.62:32
chr14	24457990	rs111695788	G	C	675.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:49,32:0.40:81
chr14	24458013	rs117487342	G	A	1600.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:48,67:0.58:115
chr14	24458162	rs2273946	G	C	6417.77	.	AC=1;AF=0.500;AN=2;DB;DP=517;set=Intersection	GT:AD:AF:DP	0/1:214,303:0.59:517
chr14	24459493	rs60865462	G	A	2465.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:80,103:0.56:183
chr14	24459520	rs45583341	T	C	1654.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:58,77:0.57:135
chr14	24470138	rs1811890	C	T	4085.77	.	AC=1;AF=0.500;AN=2;DB;DP=517;set=Intersection	GT:AD:AF:DP	0/1:305,205:0.40:510
chr14	24470231	rs79847141	T	G	5018.77	.	AC=1;AF=0.500;AN=2;DB;DP=748;set=Intersection	GT:AD:AF:DP	0/1:482,265:0.35:747
chr14	24470690	.	T	TA	4627.73	.	AC=1;AF=0.500;AN=2;DP=413;set=Intersection	GT:AD:AF:DP	0/1:262,146:0.36:408
chr14	24473478	.	TA	T	162.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.498;ClippingRankSum=0.000;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.77;MQRankSum=0.000;QD=1.51;ReadPosRankSum=-0.229;SOR=0.595;set=HC	GT:AD:AF:DP	0/1:72,36:0.33:108
chr14	24475265	rs200340620	T	C	361.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.185;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=3.291;MLEAC=1;MLEAF=0.500;MQ=42.63;MQRankSum=-3.219;QD=11.31;ReadPosRankSum=-1.442;SOR=1.911;set=HC	GT:AD:AF:DP	0/1:15,17:0.53:32
chr14	24505537	rs2332130	C	G	1275.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:23,45:0.66:68
chr14	24505722	rs8005834	C	G	9450.77	.	AC=1;AF=0.500;AN=2;DB;DP=764;MQ=59.99;set=Intersection	GT:AD:AF:DP	0/1:316,444:0.58:760
chr14	24507010	rs12587718	C	A	4333.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:120,191:0.61:311
chr14	24512962	rs12894919	C	T	879.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.49;SOR=1.681;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr14	24517254	rs113794500	G	A	3398.77	.	AC=1;AF=0.500;AN=2;DB;DP=430;MQ=59.99;set=Intersection	GT:AD:AF:DP	0/1:247,169:0.41:416
chr14	24522911	rs35809913	C	G	6885.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr14	24525081	rs45455891	T	A	686.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:69,36:0.34:105
chr14	24525634	rs4982851	C	A	23583.77	.	AC=2;AF=1.00;AN=2;DB;DP=893;set=Intersection	GT:AD:AF:DP	1/1:1,890:1.00:891
chr14	24525782	rs4982852	A	G	16287.77	.	AC=2;AF=1.00;AN=2;DB;DP=597;set=Intersection	GT:AD:AF:DP	1/1:0,589:1.00:589
chr14	24526206	rs45484702	T	C	8767.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chr14	24526287	rs7161473	G	C	12286.77	.	AC=2;AF=1.00;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	1/1:0,433:1.00:433
chr14	24526478	rs12879859	A	G	10770.77	.	AC=2;AF=1.00;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	1/1:4,400:0.99:404
chr14	24526593	rs12431698	A	G	1971.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:1,65:0.98:66
chr14	24528698	rs143975492	C	T	1234.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:21,49:0.70:70
chr14	24529820	rs1951636	C	G	2400.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:2,92:0.98:94
chr14	24529890	rs1951635	A	G	6323.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr14	24533302	.	CAA	C	377.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.517;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=17.99;ReadPosRankSum=0.762;SOR=0.551;set=HC	GT:AD:AF:DP	1/1:4,17:0.81:21
chr14	24534270	rs117833529	C	T	4735.77	.	AC=1;AF=0.500;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	0/1:138,210:0.60:348
chr14	24534781	rs12590548	G	A	2072.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr14	24534916	rs79328356	G	T	1267.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:61,61:0.50:122
chr14	24535117	rs74917851	G	A	304.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:5,15:0.75:20
chr14	24542458	rs3742497	T	A	1439.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr14	24543158	rs75415848	C	T	1082.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:30,42:0.58:72
chr14	24543808	rs2070343	G	C	3533.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:120,163:0.58:283
chr14	24543873	rs2025256	G	A	9386.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:0,346:1.00:346
chr14	24544248	rs2073350	C	T	834.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:56,37:0.40:93
chr14	24545366	rs2070342	T	C	2096.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:43,85:0.66:128
chr14	24545375	rs2070341	C	T	831.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:98,46:0.32:144
chr14	24545835	rs45621931	C	T	8336.77	.	AC=1;AF=0.500;AN=2;DB;DP=711;set=Intersection	GT:AD:AF:DP	0/1:279,418:0.60:697
chr14	24545984	rs2070345	G	C	2385.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:72,104:0.59:176
chr14	24563212	rs4982856	T	C	2217.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:187,121:0.39:308
chr14	24563339	rs4982857	A	G	2863.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr14	24567304	rs2759409	C	A	907.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:50,40:0.44:90
chr14	24567498	rs3021119	A	C	13636.77	.	AC=2;AF=1.00;AN=2;DB;DP=518;set=Intersection	GT:AD:AF:DP	1/1:4,502:0.99:506
chr14	24587515	rs2277480	G	A	2630.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:68,112:0.62:180
chr14	24587545	rs2277481	A	G	3437.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:104,155:0.60:259
chr14	24587639	rs3825584	G	A	4743.77	.	AC=1;AF=0.500;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	0/1:143,225:0.61:368
chr14	24587667	rs17101367	C	T	4901.77	.	AC=1;AF=0.500;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	0/1:133,233:0.64:366
chr14	24587795	rs2277482	C	T	2055.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:37,80:0.68:117
chr14	24600390	rs927494	T	A	1604.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:47,63:0.57:110
chr14	24601318	rs11574503	G	C	612.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:12,24:0.67:36
chr14	24614361	rs7146672	T	G	9971.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:1,368:1.00:369
chr14	24624741	rs2295979	C	G	5147.77	.	AC=1;AF=0.500;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	0/1:149,208:0.58:357
chr14	24625031	rs4982862	C	G	658.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:15,27:0.64:42
chr14	24646406	rs10690822	G	GGAA	6950.73	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr14	24679877	rs2295322	C	T	5991.77	.	AC=1;AF=0.500;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	0/1:163,270:0.62:433
chr14	24686480	rs149980708	TTTG	T	725.73	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:22,23:0.51:45
chr14	24701598	.	ACCCCC	A	234.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.116;ClippingRankSum=0.000;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=0.000;QD=13.81;ReadPosRankSum=0.109;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:7,10:0.59:17
chr14	24702987	rs11158615	A	G	8591.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr14	24718379	rs41294726	TCTCCGGGAGCCCTGGACTCCCC	T	3796.73	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr14	24718515	rs2229463	G	A	12796.77	.	AC=2;AF=1.00;AN=2;DB;DP=472;MQ=60.87;set=Intersection	GT:AD:AF:DP	1/1:0,470:1.00:470
chr14	24734645	rs2180196	G	A	600.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr14	24735624	rs2877612	A	G	3525.77	.	AC=1;AF=0.500;AN=2;DB;DP=549;set=Intersection	GT:AD:AF:DP	0/1:358,190:0.35:548
chr14	24736027	rs14193	G	A	1536.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:156,84:0.35:240
chr14	24736961	rs729421	T	C	1083.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:81,52:0.39:133
chr14	24737203	rs941502	A	T	654.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:66,31:0.32:97
chr14	24738379	rs59227799	T	C	2950.77	.	AC=1;AF=0.500;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	0/1:225,144:0.39:369
chr14	24739055	rs2295313	T	G	1108.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:28,40:0.59:68
chr14	24739363	rs58050348	A	AG	848.73	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:117,49:0.30:166
chr14	24740272	rs78807053	G	A	1589.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:134,83:0.38:217
chr14	24761690	rs1051883	C	T	744.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:17,29:0.63:46
chr14	24765622	rs2295307	G	A	620.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:21,27:0.56:48
chr14	24765684	rs2295306	G	A	1550.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:47,66:0.58:113
chr14	24769849	rs113258190	A	AGAGGAG	4664.73	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:80,121:0.60:201
chr14	24771137	rs4247000	G	A	1345.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:29,59:0.67:88
chr14	24771256	rs4247001	T	C	3136.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:76,138:0.64:214
chr14	24772822	rs4982894	G	A	1526.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:30,61:0.67:91
chr14	24772922	rs4982895	C	T	4694.77	.	AC=1;AF=0.500;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	0/1:120,214:0.64:334
chr14	24784911	rs3742511	T	C	5548.77	.	AC=1;AF=0.500;AN=2;DB;DP=837;set=Intersection	GT:AD:AF:DP	0/1:523,300:0.36:823
chr14	24788220	rs2295303	G	A	1927.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:90,87:0.49:177
chr14	24791136	rs4981504	A	G	1737.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr14	24793600	rs1884366	G	A	8729.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr14	24795115	rs11622527	G	T	4337.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr14	24795231	rs67156008	CCA	C	14988.73	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:0,330:1.00:330
chr14	24795237	rs55970272	T	C	15818.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:0,342:1.00:342
chr14	24795258	rs11622863	C	T	17970.77	.	AC=2;AF=1.00;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	1/1:0,441:1.00:441
chr14	24800879	rs3181256	G	A	2004.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr14	24801635	rs1950502	A	C	1107.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr14	24801956	rs2332322	G	C	5959.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr14	24802263	rs8003158	A	G	2910.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr14	24803956	rs1124644	A	C	615.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr14	24806229	rs724165	G	A	13130.77	.	AC=2;AF=1.00;AN=2;DB;DP=503;set=Intersection	GT:AD:AF:DP	1/1:0,488:1.00:488
chr14	24806800	rs1950501	G	C	5108.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr14	24808168	rs3181248	G	A	7361.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:2,280:0.99:282
chr14	24834971	rs55726184	G	A	788.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:84,43:0.34:127
chr14	24835017	rs11362560	CG	C	1819.73	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr14	24839083	rs2229309	G	C	11555.77	.	AC=2;AF=1.00;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	1/1:0,431:1.00:431
chr14	24840902	.	C	CT	30.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.242;ClippingRankSum=-0.000;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.84;ReadPosRankSum=2.025;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chr14	24843620	rs2295298	T	C	4512.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:2,176:0.99:178
chr14	24843699	rs12890614	C	T	3685.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:2,146:0.99:148
chr14	24845154	rs12880769	C	A	2619.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr14	24845841	rs7149586	T	C	13153.77	.	AC=2;AF=1.00;AN=2;DB;DP=479;set=Intersection	GT:AD:AF:DP	1/1:0,472:1.00:472
chr14	24846757	rs2243891	A	G	8209.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr14	24882373	rs3818251	G	A	2739.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr14	24882440	rs4982909	G	C	3286.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr14	24882805	rs10146609	T	C	1526.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr14	24883887	rs8017377	G	A	5102.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr14	24887462	rs3814811	T	C	3234.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr14	24898558	rs2273632	C	T	6446.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:1,243:1.00:244
chr14	24898693	rs2273631	C	T	12304.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.058;ClippingRankSum=0.000;DB;DP=292;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=42.87;ReadPosRankSum=0.692;SOR=0.354;set=HC	GT:AD:AF:DP	1/1:1,286:1.00:287
chr14	24898696	rs2273630	T	C	12206.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.302;ClippingRankSum=0.000;DB;DP=284;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=43.75;ReadPosRankSum=0.856;SOR=0.368;set=HC	GT:AD:AF:DP	1/1:1,278:1.00:279
chr14	24898751	rs2273629	G	A	3663.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr14	24898780	rs5025771	C	G	2396.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr14	24900209	rs1956905	C	G	4572.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr14	24901249	rs3742520	A	C	5771.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr14	24901276	rs7151995	G	T	5582.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr14	24901844	rs2255591	A	G	10465.77	.	AC=2;AF=1.00;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	1/1:1,365:1.00:366
chr14	24905533	rs2277488	G	A	10812.77	.	AC=2;AF=1.00;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	1/1:0,393:1.00:393
chr14	24905548	rs2277489	G	A	12504.77	.	AC=2;AF=1.00;AN=2;DB;DP=467;set=Intersection	GT:AD:AF:DP	1/1:0,458:1.00:458
chr14	24909281	rs1043839	C	T	4315.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr14	24909362	rs1043831	T	C	7231.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr14	24909475	rs3211056	C	G	11578.77	.	AC=2;AF=1.00;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	1/1:0,434:1.00:434
chr14	24909731	rs2273628	C	T	14047.77	.	AC=2;AF=1.00;AN=2;DB;DP=518;set=Intersection	GT:AD:AF:DP	1/1:0,508:1.00:508
chr14	24910210	rs712487	C	A	7019.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr14	24910317	rs10668100	C	CTT	4524.73	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr14	24910846	rs11628143	C	T	643.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr14	24910876	rs11158703	G	A	1327.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr14	24910973	rs11625819	TT	GA	8350.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr14	24911116	rs11158704	C	T	3460.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr14	24911169	rs11158705	C	T	3090.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr14	24911764	rs1956903	G	A	4160.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr14	24911852	rs12897925	C	G	8163.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr14	24970942	rs4600392	A	G	5802.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr14	24971008	rs4519248	C	T	2603.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr14	24975435	rs5249	G	T	7123.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr14	24975509	rs1885108	T	C	2820.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr14	25043068	rs1885597	T	G	1679.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr14	25044089	rs2070697	C	T	671.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr14	25044712	rs1957523	C	T	4692.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:1,167:0.99:168
chr14	25045589	rs12878578	A	G	289.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr14	25076303	rs190749747	C	G	2185.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:73,104:0.59:177
chr14	25078914	rs1957526	A	C	638.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr14	25102160	rs8192917	C	T	8195.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr14	25281843	rs712491	C	T	220.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.396;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.79;ReadPosRankSum=0.302;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:62,17:0.22:79
chr14	25287095	rs854398	T	C	848.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr14	25287224	rs8007336	C	T	3174.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:73,136:0.65:209
chr14	25288227	rs749594	T	C	1545.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:32,67:0.68:99
chr14	25347877	rs74347688	C	T	1877.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:82,92:0.53:174
chr14	26939474	rs1245213	T	A	286.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr14	28733843	rs10135219	A	C	607.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.829;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=2.688;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=0.000;QD=7.69;ReadPosRankSum=0.163;SOR=1.275;set=HC	GT:AD:AF:DP	0/1:60,19:0.24:79
chr14	28733847	rs10145670	G	A	598.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.761;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=4.214;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=0.000;QD=7.04;ReadPosRankSum=0.500;SOR=1.317;set=HC	GT:AD:AF:DP	0/1:65,20:0.24:85
chr14	29242271	rs35069942	AT	A	112.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.808;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=1.977;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=1.185;QD=3.32;ReadPosRankSum=-0.017;SOR=0.257;set=HC	GT:AD:AF:DP	0/1:19,15:0.44:34
chr14	29247047	rs11316936	AT	A	87.94	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:1,7:0.88:8
chr14	29247285	rs11358643	CT	C	131.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.738;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.69;ReadPosRankSum=-0.489;SOR=0.762;set=HC	GT:AD:AF:DP	0/1:55,23:0.29:78
chr14	29261305	.	A	AAAC	2980	.	AC=1;AF=0.500;AN=2;BRF=0.5;FR=0.5000;HP=7;HapScore=1;MGOF=4;MMLQ=27;MQ=60.34;NF=30;NR=61;PP=2980;QD=20;SC=CTTCAGCACTAAAAAAAACAA;SbPval=0.56;Source=Platypus;TC=220;TCF=74;TCR=146;TR=91;WE=29261317;WS=29261294;set=Platypus	GT:AD:AF:DP	0/1:129,91:0.41:220
chr14	29261307	rs56363493	A	AC	5253.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.453;ClippingRankSum=0.000;DB;DP=457;ExcessHet=3.0103;FS=1.836;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=0.443;QD=12.57;ReadPosRankSum=2.832;SOR=0.833;set=HC	GT:AD:AF:DP	0/1:271,147:0.35:418
chr14	29261309	.	A	C	2962	.	AC=1;AF=0.500;AN=2;BRF=0.5;FR=0.5000;HP=7;HapScore=1;MGOF=4;MMLQ=24;MQ=60.19;NF=67;NR=58;PP=2962;QD=20;SC=AGCACTAAAAAAAACAAACAA;SbPval=0.62;Source=Platypus;TC=302;TCF=155;TCR=147;TR=125;WE=29261317;WS=29261294;set=Platypus	GT:AD:AF:DP	0/1:177,125:0.41:302
chr14	29261309	rs56025822	A	AAC	6692.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.135;ClippingRankSum=0.000;DB;DP=464;ExcessHet=3.0103;FS=2.534;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=0.404;QD=14.74;ReadPosRankSum=3.183;SOR=0.835;set=HC	GT:AD:AF:DP	0/1:264,190:0.42:454
chr14	30047580	rs2273815	C	T	1619.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr14	30047690	rs11365023	CA	C	44	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr14	30063202	rs2273814	A	G	937.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:96,46:0.32:142
chr14	30066929	rs2230505	A	G	5056.77	.	AC=1;AF=0.500;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	0/1:191,229:0.55:420
chr14	30066976	rs3783299	A	T	4240.77	.	AC=1;AF=0.500;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	0/1:151,199:0.57:350
chr14	30068194	rs2273813	T	G	4250.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:137,192:0.58:329
chr14	30095924	.	C	CTT	71.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.160;ClippingRankSum=0.000;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.54;MQRankSum=0.000;QD=4.22;ReadPosRankSum=2.538;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:11,6:0.35:17
chr14	30098349	rs1191601	T	C	921.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:72,46:0.39:118
chr14	30102025	rs1209180	T	C	1378.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:87,70:0.45:157
chr14	30103441	rs1191599	T	C	756.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr14	30125660	rs6571317	A	G	4046.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:159,195:0.55:354
chr14	30194899	rs11626603	T	C	2511.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:101,125:0.55:226
chr14	31050215	rs58049	A	T	256.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:32,16:0.33:48
chr14	31074804	.	A	T	854.77	.	AC=1;AF=0.500;AN=2;DP=98;set=Intersection	GT:AD:AF:DP	0/1:55,43:0.44:98
chr14	31091758	rs229143	T	A	2208.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:105,103:0.50:208
chr14	31099603	rs117482355	A	T	84.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:22,6:0.21:28
chr14	31099738	rs229150	A	G	907.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.313;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=5.458;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.77;ReadPosRankSum=-1.509;SOR=0.585;set=HC	GT:AD:AF:DP	0/1:83,51:0.38:134
chr14	31103434	rs179287	A	G	46.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:8,4:0.33:12
chr14	31103871	rs17362475	G	T	226.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr14	31103891	rs229155	A	G	257.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:13,9:0.41:22
chr14	31107564	rs229162	T	G	596.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:60,32:0.35:92
chr14	31171727	rs73254548	G	A	127.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr14	31175237	rs72090370	G	GT	354.73	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:18,23:0.56:41
chr14	31204721	rs73254580	C	A	65.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:18,6:0.25:24
chr14	31348876	rs7140538	G	T	605.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:16,25:0.61:41
chr14	31349968	rs10706771	TA	T	1001.73	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:40,64:0.62:104
chr14	31354296	rs28362773	T	G	3016.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:89,136:0.60:225
chr14	31355096	rs1045644	C	G	3910.77	.	AC=1;AF=0.500;AN=2;DB;DP=542;set=Intersection	GT:AD:AF:DP	0/1:330,201:0.38:531
chr14	31355527	rs17097458	C	A	2535.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:46,105:0.70:151
chr14	31364099	.	CT	C	209.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.428;ClippingRankSum=0.000;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.714;QD=1.37;ReadPosRankSum=1.548;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:112,41:0.27:153
chr14	31380191	rs3736742	T	G	840.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:50,38:0.43:88
chr14	31380215	rs3830860	TA	T	1101.73	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:53,66:0.55:119
chr14	31381351	rs2273171	T	C	4434.77	.	AC=1;AF=0.500;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	0/1:153,199:0.57:352
chr14	31404277	rs9322868	T	C	4979.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr14	31424661	rs2378813	A	G	163.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr14	31424790	rs56235217	TA	T	129.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.193;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.16;ReadPosRankSum=-1.511;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:26,15:0.37:41
chr14	31483761	rs179724	G	T	330.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:10,14:0.58:24
chr14	31535603	rs6571386	G	C	10643.77	.	AC=2;AF=1.00;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	1/1:0,405:1.00:405
chr14	31538984	rs7155228	C	G	3482.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr14	31582380	rs1315794	A	G	2496.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr14	31582526	rs2273483	T	C	8352.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:2,305:0.99:307
chr14	31583512	rs61976859	C	T	2246.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr14	31597685	rs7157007	C	G	2872.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr14	31610939	rs12888959	T	C	1696.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr14	31625994	rs35553721	CA	C	683.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.744;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=3.579;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=0.903;QD=7.05;ReadPosRankSum=0.744;SOR=1.281;set=HC	GT:AD:AF:DP	0/1:33,64:0.66:97
chr14	31647241	rs2274201	G	A	7962.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr14	31647448	rs34666986	G	A	7483.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr14	31778080	rs144369949	C	CA	101.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.685;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=10.482;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.26;ReadPosRankSum=-1.077;SOR=2.973;set=HC	GT:AD:AF:DP	0/1:32,13:0.29:45
chr14	31793053	rs57656564	GAT	G	2039.73	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:3,60:0.95:63
chr14	31795361	rs3736917	A	G	3268.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr14	31806943	rs4595710	T	C	3042.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr14	31809486	rs8012940	C	T	1062.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr14	31809568	rs11408327	G	GA	5236.73	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr14	31819047	rs3736918	C	T	7740.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr14	31819913	rs7158257	A	G	4494.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;MQ=60.06;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr14	31819966	rs10602248	TTTTG	T	1827.73	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr14	31828076	rs942907	A	C	5839.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr14	31841162	rs5025288	T	C	4846.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr14	31849524	rs4981841	T	A	1873.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr14	31858025	rs3887865	C	T	4083.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr14	31864300	rs7142126	T	C	2073.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr14	31864485	rs7141532	G	C	12880.77	.	AC=2;AF=1.00;AN=2;DB;DP=484;set=Intersection	GT:AD:AF:DP	1/1:0,473:1.00:473
chr14	31922408	rs34278949	G	A	4686.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:1,177:0.99:178
chr14	32032129	rs10143899	C	T	1215.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.32;SOR=0.773;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr14	32032214	rs10144137	G	A	292.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr14	32034147	rs3759779	A	T	840.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr14	32142544	rs35659584	A	AT	89.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.180;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.41;ReadPosRankSum=-0.132;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:6,8:0.57:14
chr14	32296018	rs1540425	A	G	2393.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr14	32315901	rs8006872	A	G	2508.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr14	32414145	rs1278926	C	A	420.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:39,21:0.35:60
chr14	32414386	rs1278927	C	A	1002.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:89,54:0.38:143
chr14	32414463	rs1278928	T	C	1521.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr14	32419235	rs1278941	A	G	3251.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr14	32419331	rs1278942	C	T	7615.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr14	32419398	rs2236532	G	A	6182.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr14	32419548	rs1278943	C	T	686.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr14	32438484	rs1952966	G	A	2250.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:78,102:0.57:180
chr14	32476068	rs2378955	G	A	2433.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:80,113:0.59:193
chr14	32563640	rs8004384	A	G	1308.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr14	32623804	rs145969946	G	GT	830.73	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:122,54:0.31:176
chr14	33014869	rs3742926	C	T	2033.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:170,98:0.37:268
chr14	33015014	rs7150894	G	A	13689.77	.	AC=2;AF=1.00;AN=2;DB;DP=512;set=Intersection	GT:AD:AF:DP	1/1:0,507:1.00:507
chr14	33015082	rs17099240	A	G	3140.77	.	AC=1;AF=0.500;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	0/1:249,152:0.38:401
chr14	33046388	rs1950703	A	G	11844.77	.	AC=2;AF=1.00;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	1/1:0,441:1.00:441
chr14	33046471	rs768787	T	G	8281.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr14	33147414	rs1950697	C	G	340.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:17,13:0.43:30
chr14	33147765	rs2273417	C	A	392.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:18,15:0.45:33
chr14	33165084	rs3742927	A	T	77.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:7,4:0.36:11
chr14	33165182	rs3742929	C	T	203.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:35,14:0.29:49
chr14	33165374	.	GTC	G	43.73	.	AC=1;AF=0.500;AN=2;DP=60;set=Intersection	GT:AD:AF:DP	0/1:43,6:0.12:49
chr14	33201982	rs57844406	A	AT	50.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.098;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=2.793;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.21;ReadPosRankSum=1.341;SOR=1.828;set=HC	GT:AD:AF:DP	0/1:16,7:0.30:23
chr14	33408360	.	ACGGCCC	A	339.73	.	AC=1;AF=0.500;AN=2;DP=24;set=Intersection	GT:AD:AF:DP	0/1:10,11:0.52:21
chr14	33525317	rs35719018	G	GAA	292.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.300;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=1.292;QD=7.70;ReadPosRankSum=2.186;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:23,15:0.39:38
chr14	33836599	rs1609948	A	G	323.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:14,13:0.48:27
chr14	34029215	rs61587557	C	CA	204.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.660;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.45;MQRankSum=0.625;QD=8.90;ReadPosRankSum=-0.160;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:7,16:0.70:23
chr14	34149916	rs2297118	T	C	2905.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:76,131:0.63:207
chr14	34149997	rs2297117	T	C	921.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:33,44:0.57:77
chr14	34243477	rs8019077	T	A	1968.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr14	34263034	rs36025922	TAAA	T	3543.73	.	AC=2;AF=1.00;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.37;QD=33.43;SOR=2.245;set=HC	GT:AD:AF:DP	1/1:0,106:1.00:106
chr14	34263098	rs8010728	G	A	2453.77	.	AC=1;AF=0.500;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:191,129:0.40:320
chr14	34269167	rs12434716	G	C	9682.77	.	AC=1;AF=0.500;AN=2;DB;DP=719;set=Intersection	GT:AD:AF:DP	0/1:291,415:0.59:706
chr14	34269721	rs10141940	C	T	1847.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:65,78:0.55:143
chr14	34269775	rs10142034	C	G	862.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:33,38:0.54:71
chr14	34395148	rs3832940	GA	G	12036.73	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr14	34396358	rs145933066	G	GATTTATTT	757.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.31;QD=39.88;SOR=2.419;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr14	34419451	rs992898	G	A	2720.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:59,126:0.68:185
chr14	34985645	rs7797	G	A	3860.77	.	AC=1;AF=0.500;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	0/1:263,197:0.43:460
chr14	34993822	.	C	CA	1116	.	AC=1;AF=0.500;AN=2;BRF=0.51;FR=0.5000;HP=12;HapScore=1;MGOF=82;MMLQ=23;MQ=58.66;NF=27;NR=8;PP=1116;QD=32.0571428571;SC=ACTCTGACTTCAAAAAAAAAA;SbPval=0.35;Source=Platypus;TC=53;TCF=43;TCR=10;TR=35;WE=34993830;WS=34993812;set=Platypus	GT:AD:AF:DP	1/0:18,35:0.66:53
chr14	34993859	rs111420332	A	ATGTGTGTGTG	439.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.650;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=2.186;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=-2.105;QD=5.05;ReadPosRankSum=1.600;SOR=0.996;set=HC	GT:AD:AF:DP	0/1:61,26:0.30:87
chr14	34993863	rs61981524	A	G,ATGTGTGTGTGTGTGTG	3763.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.70;QD=42.29;SOR=0.941;set=HC	GT:AD:AF:DP	1/2:0,55,34:0.62,0.38:89
chr14	34998705	rs12147949	T	C	796.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.464;ClippingRankSum=0.000;DB;DP=217;ExcessHet=3.0103;FS=0.585;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.72;ReadPosRankSum=-1.463;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:158,56:0.26:214
chr14	35037008	rs11156848	T	C	736.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:84,42:0.33:126
chr14	35045136	.	G	GTT	66.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.824;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=2.128;MLEAC=1;MLEAF=0.500;MQ=59.65;MQRankSum=1.848;QD=3.03;ReadPosRankSum=3.182;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:15,7:0.32:22
chr14	35050586	rs4403967	G	T	456.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr14	35062166	rs12435717	T	C	603.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:12,27:0.69:39
chr14	35062312	rs12432539	C	T	2736.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr14	35075022	rs7151774	G	T	6860.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr14	35099099	rs11847568	A	G	1676.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.698;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=1.375;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.33;ReadPosRankSum=-1.918;SOR=0.567;set=HC	GT:AD:AF:DP	0/1:58,78:0.57:136
chr14	35099329	.	T	G	380.77	.	AC=1;AF=0.500;AN=2;DP=59;set=Intersection	GT:AD:AF:DP	0/1:39,19:0.33:58
chr14	35099391	rs201601692	A	AGCGGG	363.73	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:6,10:0.62:16
chr14	35182348	rs35515423	GA	G	596.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.226;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=0.752;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=1.853;QD=5.23;ReadPosRankSum=0.894;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:65,49:0.43:114
chr14	35183888	rs117211470	C	G	1044.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.992;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=6.962;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.59;ReadPosRankSum=-0.912;SOR=0.234;set=HC	GT:AD:AF:DP	0/1:23,44:0.66:67
chr14	35222732	rs61754296	C	T	2081.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:190,108:0.36:298
chr14	35222996	rs140179317	A	G	293.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:21,13:0.38:34
chr14	35223956	rs8005659	A	G	361.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:10,9:0.47:19
chr14	35223970	rs60879255	CA	TG	430.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;JOINED;set=Intersection	GT:AD:AF:DP	0/1:12,12:0.50:24
chr14	35224294	rs8010579	C	T	67.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.329;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.82;ReadPosRankSum=0.335;SOR=0.247;set=HC	GT:AD:AF:DP	0/1:18,6:0.25:24
chr14	35227880	rs61981201	G	T	955.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:117,52:0.31:169
chr14	35230906	rs17526787	G	A	144.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:30,9:0.23:39
chr14	35231527	rs10150630	C	T	516.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:38,23:0.38:61
chr14	35238045	rs10150083	G	C	134.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:13,7:0.35:20
chr14	35242828	rs2275145	G	A	753.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:97,44:0.31:141
chr14	35243006	rs2275146	G	A	261.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:36,15:0.29:51
chr14	35245728	.	TTAAAA	T	2428.73	.	AC=1;AF=0.500;AN=2;DP=110;set=Intersection	GT:AD:AF:DP	0/1:38,62:0.62:100
chr14	35343629	rs2145031	A	C	572.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.291;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.82;ReadPosRankSum=0.882;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:52,32:0.38:84
chr14	35465784	rs2273158	T	A	1606.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr14	35468893	rs12433712	T	A	2676.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr14	35469991	rs8017191	G	A	3874.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:1,126:0.99:127
chr14	35470019	rs8018114	T	C	5912.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr14	35470049	rs8017225	G	A	9882.77	.	AC=2;AF=1.00;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	1/1:1,370:1.00:371
chr14	35476673	rs28456062	G	A	348.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr14	35477785	rs1712351	G	A	820.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr14	35482797	rs2383692	A	G	4060.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr14	35488309	rs17102982	A	G	1697.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr14	35515606	rs4007475	TGG	T	1017.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr14	35550467	.	G	GT	53.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.559;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.79;ReadPosRankSum=-1.081;SOR=0.960;set=HC	GT:AD:AF:DP	0/1:22,8:0.27:30
chr14	35566040	rs75741665	A	T	513.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.34;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr14	35591174	rs1056879	T	C	22400.77	.	AC=2;AF=1.00;AN=2;DB;DP=843;set=Intersection	GT:AD:AF:DP	1/1:2,828:1.00:830
chr14	35591316	rs28365850	G	A	6313.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr14	35592538	rs941653	C	G	5243.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr14	35761675	rs1048990	C	G	2913.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr14	35779397	rs33988739	CT	C	377.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.560;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.99;ReadPosRankSum=-1.355;SOR=1.075;set=HC	GT:AD:AF:DP	0/1:10,32:0.76:42
chr14	35782253	rs4665	A	G	1747.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:39,76:0.66:115
chr14	35871407	rs1022714	A	G	1423.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr14	35871441	rs70937092	A	AGTAAGCTATTAAAAAAAGG	1200.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.46;QD=57.18;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr14	35872765	rs2233416	G	A	1304.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:33,56:0.63:89
chr14	35872792	rs2233415	A	G	1049.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:82,52:0.39:134
chr14	35872835	rs11569599	ACT	A	2563.73	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:122,71:0.37:193
chr14	36003618	rs144835486	C	T	1506.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:98,76:0.44:174
chr14	36004075	rs1958260	A	G	9200.77	.	AC=2;AF=1.00;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	1/1:0,340:1.00:340
chr14	36044337	rs61622892	G	GA	449.70	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.483;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=1.817;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=12.85;ReadPosRankSum=-0.110;SOR=0.404;set=HC	GT:AD:AF:DP	1/1:6,29:0.83:35
chr14	36096255	rs34349314	G	GA	1237.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.709;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.75;ReadPosRankSum=-0.299;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:40,87:0.69:127
chr14	36121087	rs35892589	CA	C	615.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr14	36217611	.	G	A	93	.	AC=1;AF=0.500;AN=2;BRF=0.32;FR=0.5000;HP=1;HapScore=2;MGOF=38;MMLQ=27;MQ=60.0;NF=5;NR=1;PP=93;QD=21.2952020912;SC=TAAGAGATGCGGTCTCTCCAT;SbPval=0.57;Source=Platypus;TC=15;TCF=13;TCR=2;TR=6;WE=36217619;WS=36217602;set=Platypus	GT:AD:AF:DP	1/0:9,6:0.40:15
chr14	36231816	rs11847872	G	A	870.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr14	36334030	rs12890607	G	C	860.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr14	36334905	.	CT	C	253.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.654;ClippingRankSum=0.000;DP=93;ExcessHet=3.0103;FS=3.473;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.552;QD=2.99;ReadPosRankSum=0.553;SOR=1.168;set=HC	GT:AD:AF:DP	0/1:51,34:0.40:85
chr14	36768276	rs4900833	T	C	2888.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr14	36781037	rs7154340	C	T	2205.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr14	36789729	rs3168891	T	G	6288.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr14	36789775	rs2899849	A	T	8116.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr14	36789795	rs11558802	G	A	8000.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr14	36840650	rs3742592	A	T	11927.77	.	AC=2;AF=1.00;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	1/1:0,444:1.00:444
chr14	36840695	rs3742593	A	G	3230.77	.	AC=1;AF=0.500;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	0/1:278,166:0.37:444
chr14	36944188	rs1012914	G	A	5282.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr14	36947081	rs12435251	C	T	1311.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:37,59:0.61:96
chr14	36988928	rs149047715	A	AAG	1058.73	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:128,48:0.27:176
chr14	37051427	rs11624339	C	T	1388.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr14	37051634	rs35669843	G	C	1635.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr14	37131993	rs12883298	G	C	928.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:33,38:0.54:71
chr14	37132048	rs12882923	A	G	2392.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:77,111:0.59:188
chr14	37132061	rs12883049	A	G	2832.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:96,132:0.58:228
chr14	37132769	rs2236007	G	A	5430.77	.	AC=1;AF=0.500;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	0/1:109,238:0.69:347
chr14	37135752	rs12881240	C	T	1528.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:67,75:0.53:142
chr14	37140504	rs8004187	C	T	267.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:5,11:0.69:16
chr14	37194681	rs58321507	AAAAT	A	1226.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.103;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.37;MQRankSum=0.840;QD=29.21;ReadPosRankSum=-0.711;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:10,32:0.76:42
chr14	37203617	rs3061575	T	TTA	2752.73	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:2,104:0.98:106
chr14	37203642	rs5807904	TA	T	5490.73	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr14	37344229	rs5807914	A	AG	9531.73	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr14	37344275	rs712384	C	T	4936.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:1,184:0.99:185
chr14	37344347	rs2021404	C	T	1484.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:21,58:0.73:79
chr14	37641880	rs1403	C	A	7543.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr14	37739846	rs66866056	C	CT	105.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.628;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.34;MQRankSum=0.904;QD=6.61;ReadPosRankSum=0.545;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:6,10:0.62:16
chr14	37838604	rs35277854	C	CA	691.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.653;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.74;ReadPosRankSum=-0.766;SOR=1.236;set=HC	GT:AD:AF:DP	1/1:3,36:0.92:39
chr14	38016044	rs10151200	C	G	332.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:7,15:0.68:22
chr14	38061742	rs7144658	C	T	3719.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:126,174:0.58:300
chr14	38064009	rs762083	G	C	2527.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:40,98:0.71:138
chr14	38064215	rs79519281	G	C	4764.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.067;ClippingRankSum=0.000;DB;DP=370;ExcessHet=3.0103;FS=4.820;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.27;ReadPosRankSum=0.011;SOR=0.497;set=HC	GT:AD:AF:DP	0/1:140,219:0.61:359
chr14	38165784	rs960787	A	G	61.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:6,4:0.40:10
chr14	38205027	rs1570399	T	C	990.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr14	38206818	rs4901157	G	A	812.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr14	38207008	rs11439106	A	AT	897.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:3,46:0.94:49
chr14	38207018	rs17107021	A	T	1145.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr14	38218343	rs12586727	A	G	8061.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chr14	38218872	rs17768594	T	G	664.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr14	38222291	rs4901176	G	C	1986.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr14	38256944	rs12586423	T	C	419.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:42,21:0.33:63
chr14	38259876	rs12590844	G	A	650.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:14,25:0.64:39
chr14	38260034	rs17107106	T	C	1948.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:53,89:0.63:142
chr14	38260089	rs7153624	C	T	1720.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr14	38264358	rs969446	C	T	310.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:20,15:0.43:35
chr14	38265344	rs1951639	T	A	439.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.41;SOR=5.421;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr14	38266074	rs9805910	C	T	1981.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:195,106:0.35:301
chr14	38276433	rs66496750	G	A	473.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:6,17:0.74:23
chr14	38295646	rs10483494	T	C	835.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr14	38310606	rs10151474	G	A	477.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr14	38678356	rs12437095	G	A	845.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:58,43:0.43:101
chr14	38678492	rs12434340	T	C	591.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:32,30:0.48:62
chr14	38679763	.	C	CGCTCTGAGCCCGGGCCACGCAGGG	1066.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.590;ClippingRankSum=0.000;DP=171;ExcessHet=3.0103;FS=5.553;MLEAC=1;MLEAF=0.500;MQ=61.81;MQRankSum=6.942;QD=16.93;ReadPosRankSum=-0.897;SOR=1.591;set=HC	GT:AD:AF:DP	0/1:30,33:0.52:63
chr14	39502539	rs11418467	G	GA	2221.73	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr14	39502626	rs11283010	A	AAATAGAAC	771.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr14	39510173	rs62001129	T	C	277.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.078;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=4.151;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.92;ReadPosRankSum=-1.752;SOR=0.138;set=HC	GT:AD:AF:DP	0/1:14,14:0.50:28
chr14	39511952	rs3837584	CT	C	482.73	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:42,20:0.32:62
chr14	39512122	rs4902326	T	A	193.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:44,14:0.24:58
chr14	39514231	rs1884384	T	A	1210.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr14	39516714	.	C	CA	135.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.908;ClippingRankSum=0.000;DP=114;ExcessHet=3.0103;FS=13.434;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.930;QD=1.32;ReadPosRankSum=-1.349;SOR=0.083;set=HC	GT:AD:AF:DP	0/1:79,24:0.23:103
chr14	39517691	rs4902344	T	A	320.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:15,14:0.48:29
chr14	39524257	.	G	A	823.77	.	AC=1;AF=0.500;AN=2;DP=58;set=Intersection	GT:AD:AF:DP	0/1:21,36:0.63:57
chr14	39524614	rs11301994	AT	A	114.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.082;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=2.282;MLEAC=1;MLEAF=0.500;MQ=60.90;MQRankSum=1.718;QD=5.74;ReadPosRankSum=-1.299;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:9,11:0.55:20
chr14	39543814	rs147995893	T	TAAG	587.73	.	AC=1;AF=0.500;AN=2;DB;DP=45;MQ=60.24;set=Intersection	GT:AD:AF:DP	0/1:26,17:0.40:43
chr14	39554893	.	TACACACACACAC	T,TACACACACAC	2081.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.344;ClippingRankSum=0.000;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.14;MQRankSum=3.015;QD=26.69;ReadPosRankSum=0.706;SOR=0.941;set=HC	GT:AD:AF:DP	1/2:2,45,31:0.58,0.40:78
chr14	39556185	rs8018720	G	C	6659.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr14	39565403	rs3818163	T	A	594.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:22,23:0.51:45
chr14	39583481	rs2277458	A	G	2436.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr14	39587348	rs10136536	A	G	435.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:26,23:0.47:49
chr14	39591082	rs10132073	A	G	78.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:14,6:0.30:20
chr14	39591613	rs60205535	G	GT	500.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.330;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=1.009;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.238;QD=5.69;ReadPosRankSum=-1.634;SOR=0.474;set=HC	GT:AD:AF:DP	0/1:47,41:0.47:88
chr14	39605542	rs9322993	T	C	2347.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr14	39620788	rs8003485	A	T	426.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr14	39620936	rs8003807	C	T	4451.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr14	39623533	rs12147991	T	C	627.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:73,36:0.33:109
chr14	39627695	rs9322994	C	T	376.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:56,25:0.31:81
chr14	39627747	rs761804	A	G	1060.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr14	39644498	rs1061583	G	A	1158.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:126,63:0.33:189
chr14	39645863	rs2252040	G	A	1659.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr14	39645921	rs35814032	GC	G,GCC	465.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=23;set=Intersection	GT:AF:DP	1/2:0.53,0.47:19
chr14	39647153	rs5808025	TTTAAG	T	563.73	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:17,16:0.48:33
chr14	39648629	rs11558739	C	T	1093.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:41,49:0.54:90
chr14	39650234	rs2180792	A	T	4686.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr14	39703324	rs7141840	A	G	6009.77	.	AC=1;AF=0.500;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	0/1:178,280:0.61:458
chr14	39703498	rs7143646	T	C	3129.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:83,137:0.62:220
chr14	39703548	rs76790306	G	T	1485.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:33,61:0.65:94
chr14	39716808	rs3825549	T	C	1578.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:98,72:0.42:170
chr14	39736680	rs7140561	T	C	3007.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr14	39748480	rs7158558	G	A	668.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr14	39763006	rs956109	T	C	311.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr14	39773639	rs2274398	G	T	1035.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.89;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr14	39777676	rs1950952	G	C	444.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr14	39784010	.	A	ATGTG	1209.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.126;ClippingRankSum=0.000;DP=131;ExcessHet=3.0103;FS=3.720;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.43;ReadPosRankSum=3.002;SOR=1.236;set=HC	GT:AD:AF:DP	0/1:50,66:0.57:116
chr14	39784012	rs12436164	A	G,ATGTGTGTGTG	2840.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.626;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=29.59;ReadPosRankSum=0.045;SOR=0.908;set=HC	GT:AD:AF:DP	1/2:2,69,25:0.72,0.26:96
chr14	39784014	rs2415539	A	G	3919.73	.	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.59;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:1,98:0.99:99
chr14	39784042	rs2415540	A	G	1993.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.92;SOR=1.697;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr14	39784042	.	ATA	GTA,GTG	681	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.5;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=90;MMLQ=27;MQ=58.05;NF=16,9;NR=35,18;PP=72,681;QD=2.0935531872;SC=GTGTGTGTGTATATATATATA;SbPval=0.5;Source=Platypus;TC=56;TCF=17;TCR=39;TR=51,27;WE=39784052;WS=39784030;set=Platypus	GT:AF:DP	0/1:0.91:56
chr14	39784044	rs112379214	A	G	907.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.944;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=1.098;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.93;ReadPosRankSum=1.469;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:22,35:0.61:57
chr14	39784700	rs45449400	C	T	303.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:7,13:0.65:20
chr14	39784965	rs10150863	G	T	1253.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr14	39796048	rs36031495	GT	G	2624.73	.	AC=2;AF=1.00;AN=2;DB;DP=133;MQ=60.16;set=Intersection	GT:AD:AF:DP	1/1:1,123:0.99:124
chr14	39815250	rs141233863	TTTC	T	1446.73	.	AC=1;AF=0.500;AN=2;DB;DP=99;MQ=60.11;set=Intersection	GT:AD:AF:DP	0/1:58,40:0.41:98
chr14	39818145	rs1060878	G	A	657.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:68,34:0.33:102
chr14	39818222	rs7156249	G	T	1450.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr14	39856043	rs10146207	G	C	4171.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr14	39870296	rs10146622	T	C	362.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:37,20:0.35:57
chr14	39871017	rs7156962	T	C	3108.77	.	AC=1;AF=0.500;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	0/1:285,164:0.37:449
chr14	39871742	rs7158282	T	C	385.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:55,22:0.29:77
chr14	39900836	rs45453296	A	G	4372.77	.	AC=1;AF=0.500;AN=2;DB;DP=565;set=Intersection	GT:AD:AF:DP	0/1:341,217:0.39:558
chr14	39901157	rs61999077	C	A	3406.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:168,153:0.48:321
chr14	42355771	rs721222	C	T	655.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:33,28:0.46:61
chr14	42360633	rs6572117	T	C	4299.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:115,184:0.62:299
chr14	42997963	rs9323070	A	G	1973.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.920;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=1.200;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.61;ReadPosRankSum=1.255;SOR=0.805;set=HC	GT:AD:AF:DP	0/1:77,93:0.55:170
chr14	42998026	rs10148466	T	C	2854.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr14	44974966	rs1959379	G	A	1677.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:50,71:0.59:121
chr14	44975052	rs3825630	A	G	2971.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:86,129:0.60:215
chr14	44975606	rs3809429	G	T	3863.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:115,175:0.60:290
chr14	45565498	.	ATT	A	265.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.592;ClippingRankSum=0.000;DP=128;ExcessHet=3.0103;FS=1.097;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=-1.024;QD=4.09;ReadPosRankSum=2.130;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:46,19:0.29:65
chr14	45571012	.	C	CT	190.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.092;ClippingRankSum=0.000;DP=97;ExcessHet=3.0103;FS=1.056;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.69;ReadPosRankSum=0.441;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:49,22:0.31:71
chr14	45575202	rs72672919	C	A	1918.77	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:224,115:0.34:339
chr14	45590026	.	C	T	1932.77	.	AC=1;AF=0.500;AN=2;DP=147;set=Intersection	GT:AD:AF:DP	0/1:57,90:0.61:147
chr14	45673260	rs11626440	A	C	1581.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:35,71:0.67:106
chr14	45700232	rs34842824	A	C	518.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:8,20:0.71:28
chr14	47121018	rs139502430	G	GC	1312.73	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:27,49:0.64:76
chr14	47314938	rs1388568	C	T	6913.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr14	47315127	rs1388567	G	A	5036.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr14	47324127	rs3007133	G	A	563.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr14	47341131	rs2933208	C	G	1285.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr14	47426637	rs12590500	C	A	668.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:115,43:0.27:158
chr14	47426880	rs17117844	T	C	557.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:65,34:0.34:99
chr14	47528470	rs8009302	T	C	8880.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:0,338:1.00:338
chr14	47528551	rs10144183	T	A	8009.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr14	47530841	rs7147260	A	C	1074.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.578;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.79;ReadPosRankSum=0.702;SOR=0.581;set=HC	GT:AD:AF:DP	0/1:53,31:0.37:84
chr14	47530845	rs7147741	G	C	1045.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.730;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.75;ReadPosRankSum=0.621;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:52,30:0.37:82
chr14	47582348	rs8006750	T	C	187.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:36,14:0.28:50
chr14	47687187	rs8011854	A	C	1284.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr14	50033049	rs35919176	G	A	222.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:4,11:0.73:15
chr14	50044392	rs2883438	T	C	3207.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr14	50065359	rs2281837	C	G	25832.77	.	AC=2;AF=1.00;AN=2;DB;DP=965;set=Intersection	GT:AD:AF:DP	1/1:0,955:1.00:955
chr14	50065444	rs12884574	G	A	11687.73	.	AC=1;AF=0.500;AN=2;DB;DP=874;set=Intersection	GT:AD:AF:DP	0/1:339,526:0.61:865
chr14	50065717	rs2281836	G	C	4744.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr14	50068299	rs11625804	C	G	945.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:60,49:0.45:109
chr14	50069282	rs2354444	A	T	333.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:32,16:0.33:48
chr14	50070384	rs7146398	T	C	240.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:21,14:0.40:35
chr14	50074014	rs2354445	G	T	639.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:36,28:0.44:64
chr14	50074122	rs17121605	T	A	4004.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:135,186:0.58:321
chr14	50074520	rs7148147	C	T	6754.77	.	AC=1;AF=0.500;AN=2;DB;DP=505;set=Intersection	GT:AD:AF:DP	0/1:187,307:0.62:494
chr14	50080871	rs6572592	G	A	780.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr14	50087753	rs7519	T	C	1121.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:95,62:0.39:157
chr14	50092471	rs9989177	T	C	1362.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:86,65:0.43:151
chr14	50094639	rs6572594	G	A	263.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:4,11:0.73:15
chr14	50094913	rs2985696	C	A	358.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr14	50100386	rs2985687	T	C	13572.77	.	AC=2;AF=1.00;AN=2;DB;DP=510;set=Intersection	GT:AD:AF:DP	1/1:0,503:1.00:503
chr14	50100683	rs2985686	C	G	3822.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr14	50101370	rs2985685	G	A	7425.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr14	50101682	rs2985684	C	G	15080.77	.	AC=2;AF=1.00;AN=2;DB;DP=572;set=Intersection	GT:AD:AF:DP	1/1:0,565:1.00:565
chr14	50110319	rs3218801	T	C	525.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:23,25:0.52:48
chr14	50110494	rs3218796	C	T	205.28	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:1,8:0.89:9
chr14	50113915	rs7155238	T	G	351.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:6,13:0.68:19
chr14	50114117	rs3218792	CT	C	487.73	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:10,28:0.74:38
chr14	50120858	rs3212323	C	T	924.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:20,41:0.67:61
chr14	50122280	rs10678863	C	CAG	649.73	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:9,17:0.65:26
chr14	50129941	rs41415347	C	T	340.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:20,16:0.44:36
chr14	50175792	rs11157703	T	C	768.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr14	50195679	rs4301946	A	G	6596.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr14	50199337	rs60013005	A	AT	752.73	.	AC=1;AF=0.500;AN=2;DB;DP=51;MQ=60.21;set=Intersection	GT:AD:AF:DP	0/1:7,43:0.86:50
chr14	50199375	rs10146753	A	C	2684.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr14	50206702	rs4898631	G	A	152.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr14	50241258	rs4499141	A	C	5195.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr14	50244835	rs4900949	C	T	3759.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr14	50245374	rs6572613	C	A	324.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr14	50247290	rs4900952	G	T	1350.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr14	50251369	rs10143621	A	G	3403.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr14	50251888	rs8009346	C	T	7313.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr14	50272950	.	G	GTATATATATATATATA	89.19	.	AC=2;AF=1.00;AN=2;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.73;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr14	50280577	rs3126194	T	C	511.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr14	50280688	rs3126195	T	A	1877.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr14	50298153	rs11365862	AT	A	543.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr14	50298962	rs3100906	T	A	5049.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;MQ=60.11;set=Intersection	GT:AD:AF:DP	1/1:3,192:0.98:195
chr14	50299051	rs56170989	CT	C	457.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.168;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=6.134;MLEAC=1;MLEAF=0.500;MQ=60.34;MQRankSum=0.630;QD=10.17;ReadPosRankSum=0.248;SOR=2.517;set=HC	GT:AD:AF:DP	0/1:9,36:0.80:45
chr14	50300310	rs3100904	A	G	1558.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr14	50300780	.	A	AT	75.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.042;ClippingRankSum=0.000;DP=172;ExcessHet=3.0103;FS=1.891;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.53;ReadPosRankSum=0.025;SOR=1.003;set=HC	GT:AD:AF:DP	0/1:119,24:0.17:143
chr14	50319327	rs3126160	T	C	12471.77	.	AC=2;AF=1.00;AN=2;DB;DP=466;set=Intersection	GT:AD:AF:DP	1/1:0,457:1.00:457
chr14	50319499	rs3100887	G	T	7858.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:1,291:1.00:292
chr14	50459609	rs10134002	T	C	5113.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr14	50459673	rs10134096	T	C	2412.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr14	50469628	rs7155104	C	A	3082.77	.	AC=1;AF=0.500;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	0/1:226,157:0.41:383
chr14	50472405	rs6572635	G	A	1807.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:104,89:0.46:193
chr14	50474062	rs11623184	C	G	1075.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:121,59:0.33:180
chr14	50477578	rs8012757	G	A	61.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.112;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=2.090;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.57;ReadPosRankSum=-1.055;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:18,6:0.25:24
chr14	50477634	rs8012384	A	G	365.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.574;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.46;ReadPosRankSum=-0.087;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:44,23:0.34:67
chr14	50477643	rs4900978	G	C	2726.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr14	50477811	rs12589730	C	T	630.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:51,34:0.40:85
chr14	50555664	rs2883738	G	T	619.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr14	50585574	rs10658395	C	CA,CAA	1131.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.215;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=5.235;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=19.51;ReadPosRankSum=-1.735;SOR=0.141;set=HC	GT:AD:AF:DP	1/2:4,37,17:0.64,0.29:58
chr14	50585616	.	T	TA	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.634;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.74;ReadPosRankSum=0.598;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:17,7:0.29:24
chr14	50596862	rs3759597	T	C	466.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr14	50605267	rs35961944	A	AT	98.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.985;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.60;ReadPosRankSum=-0.512;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:26,12:0.32:38
chr14	50611845	rs2064667	C	T	2036.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr14	50612401	rs1014879	T	C	603.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr14	50612414	rs726797	C	T	578.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr14	50616878	rs2229869	G	A	8620.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:2,326:0.99:328
chr14	50619927	rs11628935	A	G	320.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:69,23:0.25:92
chr14	50623657	rs3736759	G	A	3365.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:8,127:0.94:135
chr14	50623679	rs3736760	G	A	3980.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.117;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.42;ReadPosRankSum=-1.310;SOR=0.771;set=HC	GT:AD:AF:DP	1/1:8,155:0.95:163
chr14	50623683	rs3736761	A	G	3980.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.405;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.13;ReadPosRankSum=-0.596;SOR=0.847;set=HC	GT:AD:AF:DP	1/1:10,155:0.94:165
chr14	50626836	rs4900992	C	T	1209.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr14	50628013	rs113097888	C	CA	162.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.010;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.06;ReadPosRankSum=0.282;SOR=0.320;set=HC	GT:AD:AF:DP	0/1:57,22:0.28:79
chr14	50641347	rs10782418	T	G	6206.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr14	50647251	rs28699670	T	A	1038.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.64;SOR=2.891;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr14	50647490	rs28734119	G	A	247.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:10,12:0.55:22
chr14	50655146	rs139780957	CTATT	C	607.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:23,17:0.42:40
chr14	50666263	rs1955924	C	T	200.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr14	50670965	rs1075537	G	C	2142.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr14	50671133	rs12888783	A	G	926.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.433;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=0.670;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.02;ReadPosRankSum=0.865;SOR=0.601;set=HC	GT:AD:AF:DP	0/1:80,52:0.39:132
chr14	50704331	rs4901000	C	T	9685.77	.	AC=2;AF=1.00;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	1/1:0,363:1.00:363
chr14	50750779	rs10135842	G	A	1670.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:124,85:0.41:209
chr14	50768699	rs41299197	T	C	6078.77	.	AC=1;AF=0.500;AN=2;DB;DP=442;set=Intersection	GT:AD:AF:DP	0/1:165,272:0.62:437
chr14	50778268	rs72473098	C	CT	1072.73	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:68,40:0.37:108
chr14	50796881	rs9323183	G	C	4528.77	.	AC=1;AF=0.500;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	0/1:167,215:0.56:382
chr14	50802972	rs10136242	G	A	852.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:20,34:0.63:54
chr14	50807624	rs11570840	C	T	196.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:20,9:0.31:29
chr14	50808802	rs7142237	G	T	578.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:32,28:0.47:60
chr14	50808965	rs11570836	A	C	507.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:33,26:0.44:59
chr14	50809873	rs3049935	C	CTTTT	78.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.176;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=11.389;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.94;ReadPosRankSum=-1.618;SOR=0.601;set=HC	GT:AD:AF:DP	0/1:15,5:0.25:20
chr14	50809895	.	G	C	138	.	AC=1;AF=0.500;AN=2;BRF=0.27;FR=0.5000;HP=2;HapScore=2;MGOF=37;MMLQ=23;MQ=60.32;NF=1;NR=8;PP=138;QD=19.1968013941;SC=TTTTTTTTGAGTTGGGTCAAA;SbPval=0.63;Source=Platypus;TC=28;TCF=3;TCR=25;TR=9;WE=50809903;WS=50809885;set=Platypus	GT:AD:AF:DP	1/0:19,9:0.32:28
chr14	50824839	rs11157737	G	A	1645.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:114,84:0.42:198
chr14	50824954	rs11157738	T	C	1463.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:117,81:0.41:198
chr14	50825033	rs11570816	T	C	461.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:42,22:0.34:64
chr14	50828838	rs10137638	A	G	90.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.902;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.16;MQRankSum=-1.389;QD=6.48;ReadPosRankSum=-0.691;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:8,6:0.43:14
chr14	50844119	rs10143848	T	C	1029.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr14	50844367	rs59930863	G	GA	3544.73	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr14	50844856	rs1890978	A	G	2399.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr14	50856927	rs10131126	A	G	2646.77	.	AC=1;AF=0.500;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	0/1:212,130:0.38:342
chr14	50863716	rs10136595	C	G	236.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:24,13:0.35:37
chr14	50877491	rs1265878	C	A	1009.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:1,34:0.97:35
chr14	50929508	rs11624731	C	A	7541.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr14	50942047	rs12717408	C	T	491.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr14	50943034	rs200978623	T	TA	68.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.711;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.68;ReadPosRankSum=2.222;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:29,12:0.29:41
chr14	50949196	rs11364906	TA	T	724.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr14	50971446	rs7146431	C	T	3160.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr14	51054598	rs35014209	A	G	1787.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:139,98:0.41:237
chr14	51057727	rs1060197	G	A	8229.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr14	51058234	rs2934684	G	T	9070.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:0,323:1.00:323
chr14	51060452	rs2291672	A	G	460.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr14	51062236	.	TTCTC	T,TTC	3373.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.828;ClippingRankSum=0.000;DP=110;ExcessHet=3.0103;FS=3.468;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.10;MQRankSum=0.209;QD=32.13;ReadPosRankSum=-1.243;SOR=2.235;set=HC	GT:AD:AF:DP	1/2:2,25,78:0.24,0.74:105
chr14	51062357	rs3759588	G	A	2795.77	.	AC=1;AF=0.500;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	0/1:248,150:0.38:398
chr14	51062455	rs10131107	G	A	2157.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:35,89:0.72:124
chr14	51087263	rs11157759	A	G	301.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:15,15:0.50:30
chr14	51089727	rs3736307	G	T	138.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr14	51096610	rs3080579	G	GTTCTT	1939.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr14	51096644	rs138369461	G	GAAT	1376.73	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:40,37:0.48:77
chr14	51097536	rs2934692	G	A	1868.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr14	51107452	rs871643	T	C	5337.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr14	51107737	rs4075253	G	A	685.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:14,24:0.63:38
chr14	51134038	rs45479904	C	G	1492.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:97,67:0.41:164
chr14	51192659	rs1983764	G	A	4828.77	.	AC=1;AF=0.500;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	0/1:132,215:0.62:347
chr14	51196142	rs2984274	T	C	1013.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr14	51204996	rs11376	C	T	12352.77	.	AC=2;AF=1.00;AN=2;DB;DP=470;set=Intersection	GT:AD:AF:DP	1/1:0,467:1.00:467
chr14	51206021	rs3015485	A	G	10236.77	.	AC=2;AF=1.00;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	1/1:0,369:1.00:369
chr14	51206145	rs12717411	A	T	3930.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:105,172:0.62:277
chr14	51208236	rs76858548	T	TGTA	7064.73	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr14	51223106	rs2295846	G	T	532.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:26,24:0.48:50
chr14	51223789	rs2073347	C	T	14300.77	.	AC=2;AF=1.00;AN=2;DB;DP=523;set=Intersection	GT:AD:AF:DP	1/1:2,512:1.00:514
chr14	51224374	rs12882191	T	G	12369.77	.	AC=2;AF=1.00;AN=2;DB;DP=465;set=Intersection	GT:AD:AF:DP	1/1:0,460:1.00:460
chr14	51224658	rs2073348	T	A	1896.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:199,96:0.33:295
chr14	51225132	rs2073349	G	T	2047.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:180,106:0.37:286
chr14	51226439	rs12892462	C	G	147.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:24,9:0.27:33
chr14	51227000	rs4901055	A	G	4916.77	.	AC=1;AF=0.500;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	0/1:151,229:0.60:380
chr14	51228682	rs6572694	G	A	1317.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr14	51230428	rs139832186	ATTCT	A	1611.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:31,54:0.64:85
chr14	51230431	rs150650334	CTT	C	463.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.848;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.59;ReadPosRankSum=-2.288;SOR=0.542;set=HC	GT:AD:AF:DP	0/1:57,26:0.31:83
chr14	51237701	rs17793018	A	G	1576.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:172,89:0.34:261
chr14	51239067	rs8020503	C	G	8484.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chr14	51245666	rs7143959	T	C	549.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:48,29:0.38:77
chr14	51289873	.	G	GT	303.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.806;ClippingRankSum=0.000;DP=224;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.42;ReadPosRankSum=0.748;SOR=0.649;set=HC	GT:AD:AF:DP	0/1:166,48:0.22:214
chr14	51289874	rs1547077	G	T	3949.41	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=-1.743;ClippingRankSum=0.000;DB;DP=221;ExcessHet=3.0103;FS=0.745;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=18.46;ReadPosRankSum=1.329;SOR=0.590;set=HC	GT:AD:AF:DP	1/1:31,183:0.86:214
chr14	51290141	rs9672090	A	G	4180.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr14	51297448	rs201889202	G	GC	441.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.55;SOR=2.985;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr14	51324884	rs2027343	A	G	3962.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:85,173:0.67:258
chr14	51324894	rs72242050	AAG	A	4785.73	.	AC=1;AF=0.500;AN=2;DB;DP=231;MQ=60.33;set=Intersection	GT:AD:AF:DP	0/1:73,138:0.65:211
chr14	51338875	rs11850408	A	C	768.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.80;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr14	51344584	rs10672040	C	CAA,CAAA	1749.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.19;QD=31.81;SOR=2.059;set=HC	GT:AD:AF:DP	1/2:0,21,34:0.38,0.62:55
chr14	51345599	rs76391304	T	C	1120.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:82,60:0.42:142
chr14	51345654	rs141630356	G	A	867.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:24,34:0.59:58
chr14	51347023	rs12889998	T	C	617.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr14	51347107	rs2185300	G	A	3071.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr14	51348281	.	C	CT	764.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.859;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.65;ReadPosRankSum=1.387;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:2,39:0.95:41
chr14	51353493	rs7158183	T	C	373.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr14	51355517	rs10144606	C	A	3971.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.30;SOR=1.094;set=HC	GT:AD:AF:DP	1/1:0,157:1.00:157
chr14	51368495	rs17123103	G	A	158.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.369;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.67;ReadPosRankSum=0.759;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:23,11:0.32:34
chr14	51368610	rs28564871	A	G	709.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:74,39:0.35:113
chr14	51368756	rs28485307	T	A	352.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:23,18:0.44:41
chr14	51370784	rs4901064	G	C	3410.77	.	AC=1;AF=0.500;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	0/1:239,171:0.42:410
chr14	51371121	rs4901065	C	T	1995.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.070;ClippingRankSum=0.000;DB;DP=234;ExcessHet=3.0103;FS=2.581;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.57;ReadPosRankSum=-0.272;SOR=0.521;set=HC	GT:AD:AF:DP	0/1:171,62:0.27:233
chr14	51371130	rs11157780	C	T	1985.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.019;ClippingRankSum=0.000;DB;DP=225;ExcessHet=3.0103;FS=2.624;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.87;ReadPosRankSum=-0.555;SOR=0.524;set=HC	GT:AD:AF:DP	0/1:164,60:0.27:224
chr14	51371150	rs11157781	C	T	779.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:128,49:0.28:177
chr14	51372098	rs3216001	CA	C	2620.73	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:92,70:0.43:162
chr14	51372103	rs1042266	C	G	2732.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:99,75:0.43:174
chr14	51372333	rs1959527	A	G	1970.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:162,95:0.37:257
chr14	51375699	rs11414268	T	TA	445.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.613;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=1.116;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.18;ReadPosRankSum=-0.014;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:57,29:0.34:86
chr14	51375797	rs8004768	T	G	336.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:35,18:0.34:53
chr14	51375826	rs8004788	T	C	209.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:15,10:0.40:25
chr14	51378590	rs11356035	CT	C	4824.73	.	AC=1;AF=0.500;AN=2;DB;DP=455;set=Intersection	GT:AD:AF:DP	0/1:258,179:0.41:437
chr14	51381286	rs4901066	T	C	400.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:25,19:0.43:44
chr14	51382292	rs192486872	T	C	2641.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:59,113:0.66:172
chr14	51382358	rs1890701	T	C	2007.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr14	51383432	rs2075643	G	A	1023.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:82,54:0.40:136
chr14	51446216	rs2275462	T	G	1216.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:139,68:0.33:207
chr14	51448413	rs10150121	T	C	625.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:29,25:0.46:54
chr14	51475794	rs2297889	A	T	1724.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:49,77:0.61:126
chr14	51491956	rs11848681	T	C	2384.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:148,118:0.44:266
chr14	51492135	rs11268748	C	CCACACAGGTGTTTT	7135.73	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr14	51710508	rs35110538	T	TA	1834.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr14	51710551	rs10131881	A	T	1539.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.58;QD=22.00;SOR=2.173;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr14	51710551	.	AA	TA,TT	718	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.37;FR=0.5000,0.5000;HP=8;HapScore=3;MGOF=26;MMLQ=27;MQ=60.53;NF=51,18;NR=16,5;PP=718,378;QD=11.235391232;SC=AACTTTTTTTAAAAAAAAATC;SbPval=0.54;Source=Platypus;TC=67;TCF=51;TCR=16;TR=67,23;WE=51710560;WS=51710533;set=Platypus	GT:AF:DP	0/1:1.00:67
chr14	51710552	rs45482399	A	T	380.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.777;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=1.029;MLEAC=1;MLEAF=0.500;MQ=60.58;MQRankSum=-1.664;QD=5.29;ReadPosRankSum=1.535;SOR=0.459;set=HC	GT:AD:AF:DP	0/1:43,29:0.40:72
chr14	51713995	rs146927855	A	ATAT	835.73	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:27,23:0.46:50
chr14	51716161	rs59489282	GT	G	722.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.493;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=7.092;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.30;ReadPosRankSum=0.925;SOR=1.333;set=HC	GT:AD:AF:DP	0/1:47,52:0.53:99
chr14	51716188	rs7161242	T	G	3205.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr14	51716467	rs7160810	G	A	1577.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr14	51720906	rs11157811	T	G	215.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr14	52165083	rs6572784	T	G	825.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr14	52182081	rs731715	T	A	14956.77	.	AC=2;AF=1.00;AN=2;DB;DP=567;set=Intersection	GT:AD:AF:DP	1/1:0,559:1.00:559
chr14	52186966	rs2277495	G	A	21294.77	.	AC=2;AF=1.00;AN=2;DB;DP=786;set=Intersection	GT:AD:AF:DP	1/1:0,781:1.00:781
chr14	52294397	rs6572795	G	A	1808.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr14	52383138	rs151056512	T	C	1076.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:102,62:0.38:164
chr14	52383228	rs11322270	GA	G	2666.73	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:13,145:0.92:158
chr14	52384014	rs1693198	G	A	2259.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:162,111:0.41:273
chr14	52384093	rs2275459	G	C	3488.77	.	AC=1;AF=0.500;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	0/1:246,174:0.41:420
chr14	52417337	.	G	A	1860.77	.	AC=1;AF=0.500;AN=2;DP=151;set=Intersection	GT:AD:AF:DP	0/1:60,84:0.58:144
chr14	52418655	rs3825601	G	A	9542.77	.	AC=2;AF=1.00;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	1/1:1,367:1.00:368
chr14	52468332	rs61971509	A	G	95.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:5,5:0.50:10
chr14	52478315	rs1051069	A	G	1179.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.751;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=2.569;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.99;ReadPosRankSum=-2.124;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:126,71:0.36:197
chr14	52481917	rs946615	C	T	2997.77	.	AC=1;AF=0.500;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	0/1:223,146:0.40:369
chr14	52486961	rs77091361	C	T	316.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:36,18:0.33:54
chr14	52495354	rs74049344	T	G	1358.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:79,65:0.45:144
chr14	52495375	rs7144352	C	T	5562.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:1,168:0.99:169
chr14	52496387	rs2273430	C	A	4999.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr14	52496407	rs2273431	C	T	4515.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr14	52505360	rs753051	A	G	1100.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:42,51:0.55:93
chr14	52505375	rs753050	A	G	1309.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:54,62:0.53:116
chr14	52505771	rs2029978	TT	AG	3107.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr14	52505811	rs2029976	C	T	688.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:12,28:0.70:40
chr14	52507429	rs3742536	A	G	1511.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:46,68:0.60:114
chr14	52509101	rs1982963	G	A	5061.77	.	AC=1;AF=0.500;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	0/1:114,231:0.67:345
chr14	52509483	rs56834750	TG	CA	5875.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;JOINED;set=Intersection	GT:AD:AF:DP	0/1:103,148:0.59:251
chr14	52509601	rs111989036	C	T	1893.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:184,100:0.35:284
chr14	52509788	rs3818187	A	G	270.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:12,12:0.50:24
chr14	52520368	rs2101919	C	T	8260.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr14	52520853	rs904059	A	G	8137.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr14	52527082	.	GA	G	131.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.382;ClippingRankSum=0.000;DP=62;ExcessHet=3.0103;FS=1.342;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.86;ReadPosRankSum=0.157;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:26,20:0.43:46
chr14	52534997	rs7151874	T	C	1088.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr14	52535387	rs984051	A	C	5703.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr14	52535415	rs984050	G	A	8287.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr14	52535648	rs3920038	G	T	6138.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr14	52536512	rs1497082	T	C	10249.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	1/1:0,380:1.00:380
chr14	52781195	rs1254598	G	A	2325.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr14	52794234	rs708502	T	C	3472.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr14	52906081	rs2249922	T	G	9267.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:2,346:0.99:348
chr14	52906179	rs2249925	C	T	2310.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr14	52907353	rs1952254	C	T	1353.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr14	52957731	.	GAA	G	156.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.011;ClippingRankSum=0.000;DP=118;ExcessHet=3.0103;FS=1.352;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=-0.489;QD=2.34;ReadPosRankSum=0.120;SOR=1.130;set=HC	GT:AD:AF:DP	0/1:51,16:0.24:67
chr14	53004157	rs10150229	T	C	1289.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr14	53019944	rs147785041	A	G	1205.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr14	53080591	rs35832722	A	G	541.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:39,26:0.40:65
chr14	53197042	rs2277493	G	C	483.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:52,24:0.32:76
chr14	53235545	rs2274274	A	T	404.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.655;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.43;ReadPosRankSum=-1.221;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:26,22:0.46:48
chr14	53250293	rs2296494	G	C	577.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:12,26:0.68:38
chr14	53325090	rs6572868	C	T	6627.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr14	53326454	rs3818453	C	A	7192.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr14	53345266	rs2357946	G	C	10100.77	.	AC=2;AF=1.00;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	1/1:0,384:1.00:384
chr14	53345378	rs2357947	G	A	8623.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr14	53348540	rs62003529	T	G	2683.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:80,124:0.61:204
chr14	53385733	rs35536399	T	TAC	308.73	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:16,11:0.41:27
chr14	53386172	rs5808695	A	ATAAT	180.73	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr14	53409584	rs7157315	C	G	253.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.802;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.86;ReadPosRankSum=-2.140;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:22,15:0.41:37
chr14	53513478	rs10599915	AAG	A	4692.73	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:93,126:0.58:219
chr14	53522324	rs5808701	T	TA	1577.73	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:30,50:0.62:80
chr14	53525392	rs915436	C	T	3568.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr14	53525427	rs12882412	C	T	1091.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:28,44:0.61:72
chr14	53529669	rs4898778	A	T	3102.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.443;ClippingRankSum=0.000;DB;DP=248;ExcessHet=3.0103;FS=0.484;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.93;ReadPosRankSum=0.551;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:100,140:0.58:240
chr14	53539471	rs875663	A	G	1125.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:29,52:0.64:81
chr14	53619463	rs2358188	G	A	2542.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:88,109:0.55:197
chr14	53619480	rs140904345	T	TGCCGCC	3191.73	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:64,80:0.56:144
chr14	53619544	rs2358189	G	A	2156.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:73,103:0.59:176
chr14	54417522	rs17563	A	G	4210.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr14	54418986	rs2761880	T	C	6983.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr14	54863577	rs2235961	G	A	1038.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:33,46:0.58:79
chr14	54868922	rs202192816	CA	C	193.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.043;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=2.125;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.36;ReadPosRankSum=-0.542;SOR=1.098;set=HC	GT:AD:AF:DP	0/1:55,27:0.33:82
chr14	54869027	rs35529322	C	CGT	794.73	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:43,34:0.44:77
chr14	54875276	rs4251623	C	A	213.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr14	54875514	rs2179896	A	G	1212.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:46,57:0.55:103
chr14	54875591	rs4251625	GT	G	155.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.379;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=1.768;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.87;ReadPosRankSum=0.042;SOR=0.250;set=HC	GT:AD:AF:DP	0/1:19,13:0.41:32
chr14	54877819	rs2143958	C	G	121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.573;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.61;ReadPosRankSum=-1.863;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:9,7:0.44:16
chr14	54879473	rs2268332	G	T	3177.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:76,142:0.65:218
chr14	55154053	rs11626473	C	T	911.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:88,51:0.37:139
chr14	55168673	rs1022754	A	G	1131.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr14	55203703	rs10133272	G	T	999.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:90,52:0.37:142
chr14	55218161	rs2295820	A	C	1042.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:33,44:0.57:77
chr14	55218435	rs2295822	A	G	801.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:32,34:0.52:66
chr14	55221345	rs911612	G	A	152.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr14	55221543	rs11627203	T	C	2020.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:63,95:0.60:158
chr14	55241531	.	CAA	C	508.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.069;ClippingRankSum=0.000;DP=85;ExcessHet=3.0103;FS=4.384;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.07;ReadPosRankSum=-0.042;SOR=1.814;set=HC	GT:AD:AF:DP	0/1:39,33:0.46:72
chr14	55241558	rs72713435	G	A	1842.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.927;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=2.275;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.53;ReadPosRankSum=0.615;SOR=0.906;set=HC	GT:AD:AF:DP	0/1:119,56:0.32:175
chr14	55241559	rs72713436	A	C	1842.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.365;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=2.288;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.53;ReadPosRankSum=0.320;SOR=0.948;set=HC	GT:AD:AF:DP	0/1:118,57:0.33:175
chr14	55255673	rs11431	C	T	15471.77	.	AC=2;AF=1.00;AN=2;DB;DP=593;set=Intersection	GT:AD:AF:DP	1/1:0,586:1.00:586
chr14	55344901	rs28477407	C	T	677.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:76,41:0.35:117
chr14	55368986	rs2183080	G	C	506.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:71,30:0.30:101
chr14	55408294	rs41309252	C	T	2698.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:57,122:0.68:179
chr14	55429902	.	AGG	A	87.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.876;ClippingRankSum=-0.000;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.53;ReadPosRankSum=1.981;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:2,5:0.71:7
chr14	55454155	rs139807986	C	CATATAT	668.73	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:44,23:0.34:67
chr14	55473900	rs9323275	T	C	41.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:17,4:0.19:21
chr14	55473949	.	T	TA	62.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.207;ClippingRankSum=0.000;DP=64;ExcessHet=3.0103;FS=1.280;MLEAC=1;MLEAF=0.500;MQ=60.51;MQRankSum=2.454;QD=1.31;ReadPosRankSum=-1.585;SOR=1.087;set=HC	GT:AD:AF:DP	0/1:33,15:0.31:48
chr14	55493350	rs1187878	T	C	2717.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:80,112:0.58:192
chr14	55493408	rs1201378	T	C	6438.77	.	AC=1;AF=0.500;AN=2;DB;DP=482;set=Intersection	GT:AD:AF:DP	0/1:185,290:0.61:475
chr14	55530120	rs3742564	T	C	347.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:46,21:0.31:67
chr14	55604935	rs4644	C	A	2965.77	.	AC=1;AF=0.500;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	0/1:259,155:0.37:414
chr14	55605036	rs4652	A	C	2777.77	.	AC=1;AF=0.500;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	0/1:278,155:0.36:433
chr14	55609234	rs2075601	C	T	647.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:45,31:0.41:76
chr14	55612006	rs71659941	TA	T	131.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.414;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=2.162;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.93;ReadPosRankSum=-0.182;SOR=0.448;set=HC	GT:AD:AF:DP	0/1:106,36:0.25:142
chr14	55617578	rs35448900	CA	C	324.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.586;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.70;ReadPosRankSum=-0.202;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:33,24:0.42:57
chr14	55619311	rs15870	A	G	487.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:32,26:0.45:58
chr14	55629650	.	T	TA	66.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.159;ClippingRankSum=0.000;DP=55;ExcessHet=3.0103;FS=6.331;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.28;ReadPosRankSum=1.579;SOR=2.062;set=HC	GT:AD:AF:DP	0/1:38,14:0.27:52
chr14	55636060	rs34824914	TA	T	76.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.861;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=2.840;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.65;ReadPosRankSum=-1.528;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:16,13:0.45:29
chr14	55647575	rs11351178	CA	C	1175.73	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:53,40:0.43:93
chr14	55647840	rs11622636	C	T	419.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:48,22:0.31:70
chr14	55817708	rs10144418	T	C	1385.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:125,73:0.37:198
chr14	55818517	rs1045002	T	A	4976.77	.	AC=1;AF=0.500;AN=2;DB;DP=662;set=Intersection	GT:AD:AF:DP	0/1:397,256:0.39:653
chr14	55818706	rs3742569	T	C	1962.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:139,98:0.41:237
chr14	55836773	rs10136596	A	G	306.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:26,15:0.37:41
chr14	55847466	rs946059	A	G	1878.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:145,90:0.38:235
chr14	55848972	rs3783650	A	C	919.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:58,44:0.43:102
chr14	55862741	rs147302124	T	C	445.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:32,22:0.41:54
chr14	55864130	rs8003279	A	G	1126.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:140,63:0.31:203
chr14	55864146	rs61743178	G	A	886.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:112,49:0.30:161
chr14	55880918	rs946055	A	G	1039.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr14	55881276	rs1890256	C	T	671.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr14	56078739	rs1138345	T	G	2012.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr14	56086190	rs7154548	T	C	592.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr14	56100160	rs10135907	G	T	906.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr14	56101164	rs139496974	AAACT	A	3031.73	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr14	56101212	rs34111199	C	T	4461.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:1,162:0.99:163
chr14	56104095	rs200929648	C	CT	268.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.239;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=1.019;MLEAC=1;MLEAF=0.500;MQ=60.69;MQRankSum=3.278;QD=3.58;ReadPosRankSum=0.371;SOR=0.515;set=HC	GT:AD:AF:DP	0/1:50,25:0.33:75
chr14	56106031	rs3831052	TGAC	T	4912.73	.	AC=2;AF=1.00;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.66;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,110:1.00:110
chr14	56106080	rs369782699	CT	C	376.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.56;ReadPosRankSum=-1.514;SOR=0.446;set=HC	GT:AD:AF:DP	1/1:3,27:0.90:30
chr14	56108007	rs10483649	G	A	1934.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr14	56108033	rs2341890	G	A	1481.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr14	56108520	rs1951890	A	G	737.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr14	56108586	rs45599941	G	C	257.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:2,9:0.82:11
chr14	56111278	rs34100965	CT	C	293.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.559;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.79;ReadPosRankSum=-0.298;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:5,25:0.83:30
chr14	56113917	rs17684916	A	C	1228.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr14	56114866	rs17128657	A	T	1948.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:2,75:0.97:77
chr14	56116576	rs71448463	AT	A	1208.73	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:3,63:0.95:66
chr14	56119454	rs17684959	C	T	555.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr14	56122689	rs35094494	G	A	716.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr14	56126456	rs7160678	C	A	4363.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr14	56133942	rs7150285	C	T	3112.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr14	56139313	rs3215766	GT	G	4001.73	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr14	56146228	rs12587735	T	G	1944.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:1,59:0.98:60
chr14	56147540	rs10483651	G	T	1789.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr14	56168011	rs117740297	C	T	920.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:103,52:0.34:155
chr14	56755425	rs34574403	C	CA	428.73	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:11,24:0.69:35
chr14	56763886	rs1152466	G	A	4785.77	.	AC=1;AF=0.500;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	0/1:150,219:0.59:369
chr14	56958173	rs1889382	C	G	268.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:21,15:0.42:36
chr14	56958328	rs12894026	G	A	2176.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:67,104:0.61:171
chr14	57046829	rs2275025	C	A	3004.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr14	57052511	rs3737171	G	T	8640.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr14	57070501	rs10782433	A	G	5355.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr14	57072203	rs3818777	T	A	364.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr14	57092038	rs2274706	A	G	5012.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr14	57099859	rs1041316	G	A	529.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.198;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=6.584;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.78;ReadPosRankSum=-1.609;SOR=1.376;set=HC	GT:AD:AF:DP	0/1:106,34:0.24:140
chr14	57101560	rs112611071	C	CA	329.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.744;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=2.926;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.215;QD=2.70;ReadPosRankSum=-0.262;SOR=1.068;set=HC	GT:AD:AF:DP	0/1:82,40:0.33:122
chr14	57101682	rs913742	A	G	12624.77	.	AC=2;AF=1.00;AN=2;DB;DP=479;MQ=60.02;set=Intersection	GT:AD:AF:DP	1/1:0,473:1.00:473
chr14	57113904	.	G	GA	88.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.154;ClippingRankSum=0.000;DP=120;ExcessHet=3.0103;FS=0.950;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.78;ReadPosRankSum=0.181;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:92,22:0.19:114
chr14	57116979	rs1958530	A	G	257.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr14	57196766	rs10151357	C	T	1123.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:33,51:0.61:84
chr14	57863385	rs12894584	C	T	1278.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:22,51:0.70:73
chr14	57866623	rs2152360	A	G	1111.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.087;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=3.913;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.95;ReadPosRankSum=-0.110;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:39,54:0.58:93
chr14	57876265	rs11620639	G	A	10117.77	.	AC=2;AF=1.00;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	1/1:0,382:1.00:382
chr14	57938124	rs1152531	C	T	1774.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:69,82:0.54:151
chr14	57938260	rs1152530	T	C	1992.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr14	57945689	rs1152525	G	A	4124.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr14	57948380	rs1152522	T	C	1036.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:30,48:0.62:78
chr14	57957654	rs1203339	T	C	695.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.331;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=3.163;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.99;ReadPosRankSum=1.129;SOR=2.066;set=HC	GT:AD:AF:DP	1/1:2,27:0.93:29
chr14	57957664	rs1203338	T	A	1352.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.79;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr14	58036494	rs2297113	G	A	280.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:20,14:0.41:34
chr14	58038544	rs725048	T	G	1933.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:115,85:0.42:200
chr14	58056257	rs1190313	G	T	2611.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:49,118:0.71:167
chr14	58060586	rs180872	C	T	216.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:12,10:0.45:22
chr14	58060598	rs238377	C	G	371.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:18,16:0.47:34
chr14	58060862	rs17724076	G	A	1991.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:60,92:0.61:152
chr14	58471445	rs17094192	C	G	2609.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:69,125:0.64:194
chr14	58471699	rs727203	T	C	2662.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:73,105:0.59:178
chr14	58478834	rs150566056	T	C	407.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:39,23:0.37:62
chr14	58478873	rs3837616	GA	G	383.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:15,23:0.61:38
chr14	58478997	rs72714763	A	G	53.77	.	AC=1;AF=0.500;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	0/1:2,3:0.60:5
chr14	58563694	rs2273442	G	C	494.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:46,25:0.35:71
chr14	58600107	rs2180520	T	A	95.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.234;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=1.670;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.99;ReadPosRankSum=0.165;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:24,8:0.25:32
chr14	58605790	rs3829765	G	A	2454.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:184,124:0.40:308
chr14	58666812	rs112877891	C	G	491.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.040;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.96;ReadPosRankSum=0.610;SOR=0.452;set=HC	GT:AD:AF:DP	0/1:9,20:0.69:29
chr14	58667068	rs149639887	C	T	2028.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:74,92:0.55:166
chr14	58674823	rs34557633	CA	C	145.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.619;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.08;ReadPosRankSum=2.324;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:45,25:0.36:70
chr14	58690427	rs111531986	T	TA	1144.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.078;ClippingRankSum=0.000;DB;DP=226;ExcessHet=3.0103;FS=0.576;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=2.058;QD=5.84;ReadPosRankSum=0.180;SOR=0.761;set=HC	GT:AD:AF:DP	0/1:107,89:0.45:196
chr14	58697795	rs111932447	C	CAG	411.73	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:16,12:0.43:28
chr14	58724817	rs35486640	C	CTT	1556.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr14	58727859	.	CT	C	50.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.005;ClippingRankSum=-0.000;DP=22;ExcessHet=3.0103;FS=6.864;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.54;ReadPosRankSum=-1.629;SOR=0.030;set=HC	GT:AD:AF:DP	0/1:11,9:0.45:20
chr14	58730626	rs2348071	A	G	1348.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr14	58737766	rs8005100	A	T	1054.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr14	58758279	rs149972156	TAC	T	109.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.033;ClippingRankSum=0.000;DB;DP=331;ExcessHet=3.0103;FS=2.588;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=-0.806;QD=0.36;ReadPosRankSum=-0.760;SOR=0.949;set=HC	GT:AD:AF:DP	0/1:266,39:0.13:305
chr14	58758331	rs11461912	G	GT	10454.73	.	AC=2;AF=1.00;AN=2;DB;DP=295;MQ=60.26;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr14	58766617	rs1957038	A	G	8366.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:1,304:1.00:305
chr14	58770389	rs10145481	C	G	3857.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr14	58771632	rs7155580	A	G	805.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr14	58785637	.	C	T	187.77	.	AC=1;AF=0.500;AN=2;DP=30;set=Intersection	GT:AD:AF:DP	0/1:20,9:0.31:29
chr14	58796940	rs116956305	A	T	738.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:62,38:0.38:100
chr14	58832185	rs71107938	C	CTT	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.503;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=2.884;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.99;ReadPosRankSum=0.704;SOR=2.179;set=HC	GT:AD:AF:DP	0/1:12,6:0.33:18
chr14	58838668	rs1051860	A	G	5558.77	.	AC=1;AF=0.500;AN=2;DB;DP=453;set=Intersection	GT:AD:AF:DP	0/1:187,265:0.59:452
chr14	58838701	rs1051861	C	T	5384.77	.	AC=1;AF=0.500;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	0/1:170,247:0.59:417
chr14	58869510	rs7153357	T	C	1407.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr14	58875135	rs372466195	CA	C	786.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.294;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=1.651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.98;ReadPosRankSum=2.424;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:83,75:0.47:158
chr14	58907006	rs138818880	TTC	T	345.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.187;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.20;ReadPosRankSum=0.500;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:85,23:0.21:108
chr14	58907825	rs71107948	AT	A	120.77	.	AC=2;AF=1.00;AN=2;DB;DP=7;QD=17.25;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr14	58907908	.	CTTT	C	310.86	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.398;ClippingRankSum=0.000;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.52;ReadPosRankSum=-0.171;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:5,18:0.78:23
chr14	58917225	rs1748970	C	G	2267.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr14	58917454	rs1748971	G	A	6880.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr14	58920240	rs1748975	A	C	1354.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr14	58923395	rs1743721	G	A	3537.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr14	58926527	rs1748980	C	T	349.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr14	58932772	rs1743716	A	G	5530.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr14	58934371	rs1632390	G	A	1827.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr14	58937416	rs1748986	T	C	11013.77	.	AC=2;AF=1.00;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	1/1:0,404:1.00:404
chr14	58953617	rs1743702	T	C	851.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr14	58953746	rs1617510	C	G	7108.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr14	58954588	rs5808973	T	TA	2846.73	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:9,137:0.94:146
chr14	58956845	.	C	CT	74.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.116;ClippingRankSum=0.000;DP=215;ExcessHet=3.0103;FS=0.775;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.35;ReadPosRankSum=1.395;SOR=0.796;set=HC	GT:AD:AF:DP	0/1:179,32:0.15:211
chr14	59010649	rs28535751	T	C	2195.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;MQ=59.98;set=Intersection	GT:AD:AF:DP	0/1:89,108:0.55:197
chr14	59105188	rs2003021	C	T	1006.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:22,51:0.70:73
chr14	59112677	rs34015825	G	A	2198.77	.	AC=1;AF=0.500;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	0/1:296,125:0.30:421
chr14	59112732	rs17832998	C	T	6812.77	.	AC=1;AF=0.500;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	0/1:125,294:0.70:419
chr14	59113537	rs61755641	C	G	1598.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.489;ClippingRankSum=0.000;DB;DP=315;ExcessHet=3.0103;FS=2.132;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.19;ReadPosRankSum=-0.725;SOR=0.550;set=HC	GT:AD:AF:DP	0/1:214,94:0.31:308
chr14	59730422	rs67718668	AAGG	A	6036.73	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr14	59730453	rs1253006	G	A	918.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:47,43:0.48:90
chr14	59781871	rs3818289	C	T	2527.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:52,105:0.67:157
chr14	59787325	.	G	GT	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.699;ClippingRankSum=0.000;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=3.338;QD=0.23;ReadPosRankSum=-0.266;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:119,25:0.17:144
chr14	59787480	rs12147707	T	C	287.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:2,10:0.83:12
chr14	59789586	rs8021976	A	G	7768.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr14	59790749	.	G	GA	83.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.037;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.28;MQRankSum=0.000;QD=3.35;ReadPosRankSum=1.287;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:15,10:0.40:25
chr14	59790813	rs6573250	C	T	1359.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.159;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=1.820;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.78;ReadPosRankSum=0.700;SOR=0.516;set=HC	GT:AD:AF:DP	0/1:30,62:0.67:92
chr14	59798473	rs2146012	C	G	1378.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:34,51:0.60:85
chr14	59814502	rs941886	C	A	487.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:20,24:0.55:44
chr14	59931931	rs1752428	T	G	110.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:5,7:0.58:12
chr14	59931982	rs141719647	C	T	93.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.213;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.38;ReadPosRankSum=-0.385;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:3,7:0.70:10
chr14	59939727	rs8660	T	C	6101.77	.	AC=1;AF=0.500;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	0/1:155,282:0.65:437
chr14	59942953	rs10634233	T	TCAAC	627.73	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:23,18:0.44:41
chr14	59946099	rs1752436	T	C	3444.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:138,169:0.55:307
chr14	59978366	rs10635523	A	ATG	9707.73	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr14	59993663	rs8011271	A	G	107.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr14	59993855	rs17834184	A	G	830.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:17,40:0.70:57
chr14	60004844	rs4261431	C	T	4673.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr14	60005330	rs74059550	C	T	75.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:5,4:0.44:9
chr14	60030295	rs150853755	AACC	A	82.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.21;MQRankSum=-1.036;QD=16.55;ReadPosRankSum=-1.645;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr14	60031996	rs1980580	G	A	1627.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:134,84:0.39:218
chr14	60032046	rs1980579	A	G	3293.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr14	60034840	rs982862	G	C	2770.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr14	60043422	rs4898996	A	G	1380.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr14	60063472	rs6573275	A	G	6819.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr14	60071972	rs1950787	T	C	559.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:53,29:0.35:82
chr14	60072023	rs1950786	G	A	5214.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr14	60073935	rs1956372	A	G	991.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:31,42:0.58:73
chr14	60076783	rs1998111	G	C	2878.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:79,132:0.63:211
chr14	60411549	rs35724288	AT	A	1055.73	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:15,31:0.67:46
chr14	60444652	rs219328	A	T	560.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr14	60451770	rs219341	G	A	1055.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr14	60451816	rs219342	G	A	1650.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr14	60468661	rs219369	C	T	2479.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr14	60483598	rs219388	C	T	370.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr14	60484931	rs219391	C	T	673.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr14	60485240	rs219392	G	A	818.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr14	60498876	rs219409	C	T	739.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr14	60519920	rs95425	C	T	5496.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr14	60530160	rs201841893	TA	T	181.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.536;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.684;QD=2.04;ReadPosRankSum=0.871;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:56,33:0.37:89
chr14	60574539	rs12465	A	G	11592.77	.	AC=2;AF=1.00;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	1/1:2,418:1.00:420
chr14	60581673	rs35459418	CT	C	3322.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.509;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.22;MQRankSum=0.396;QD=18.67;ReadPosRankSum=0.071;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:8,170:0.96:178
chr14	60581863	rs219314	G	A	11283.77	.	AC=2;AF=1.00;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	1/1:0,400:1.00:400
chr14	60581935	rs150687	C	T	12014.77	.	AC=2;AF=1.00;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	1/1:0,442:1.00:442
chr14	60582053	rs150688	G	A	6973.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr14	60616914	.	CA	C	382.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.117;ClippingRankSum=0.000;DP=294;ExcessHet=3.0103;FS=1.444;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.608;QD=1.76;ReadPosRankSum=-0.647;SOR=0.866;set=HC	GT:AD:AF:DP	0/1:154,64:0.29:218
chr14	60712755	rs368341783	T	A	325.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:50,18:0.26:68
chr14	60921673	rs1262175	T	C	551.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr14	60923783	rs11625921	C	T	1552.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr14	60928201	rs1956549	G	A	2034.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr14	60932569	rs10529202	AACACACACACACACACACACAC	A	2449.73	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr14	60935281	rs12878738	C	T	2235.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr14	60944910	rs368009262	G	A	46.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.04;MQRankSum=-0.000;QD=9.35;ReadPosRankSum=-0.524;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:3,2:0.40:5
chr14	60944959	rs11845369	A	G	479.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr14	60945203	rs11158285	G	A	929.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr14	60975956	rs1956558	T	C	5020.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr14	60976537	rs33912345	C	A	19804.77	.	AC=2;AF=1.00;AN=2;DB;DP=736;set=Intersection	GT:AD:AF:DP	1/1:2,722:1.00:724
chr14	60978071	rs1061108	C	G	3531.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr14	61118783	rs4899014	C	T	3251.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr14	61124940	rs10143202	A	G	9436.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	1/1:0,360:1.00:360
chr14	61180657	rs3742636	T	G	1652.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:176,83:0.32:259
chr14	61186509	.	C	A	1589.77	.	AC=1;AF=0.500;AN=2;DP=182;set=Intersection	GT:AD:AF:DP	0/1:99,76:0.43:175
chr14	61285352	rs973063	A	G	834.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:15,30:0.67:45
chr14	61441898	rs147405788	G	A	665.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:18,30:0.62:48
chr14	61445967	rs7142228	A	G	8270.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:1,298:1.00:299
chr14	61448510	rs2296924	A	G	1501.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr14	61449167	rs2296923	T	C	2123.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr14	61449328	rs976272	T	A	5988.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr14	61451329	rs2182985	G	A	1941.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr14	61451589	rs2149303	C	T	1810.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr14	61453739	rs33922839	C	CT	5976.73	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr14	61453942	rs12891495	C	T	231.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:37,14:0.27:51
chr14	61497058	rs1465147	T	C	100.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:11,6:0.35:17
chr14	61497147	rs1465146	A	T	1384.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr14	61497285	rs1465145	T	C	2592.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr14	61509924	rs2296921	T	C	1742.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr14	61747594	rs137950125	G	A	4522.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:107,194:0.64:301
chr14	61747644	rs3196765	A	G	8617.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr14	61789318	rs1886466	C	G	788.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr14	61915751	rs2296273	G	A	1032.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:86,53:0.38:139
chr14	61952429	rs1536016	T	C	11472.77	.	AC=2;AF=1.00;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	1/1:0,427:1.00:427
chr14	61995673	rs2463117	C	T	621.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.47;QD=27.03;SOR=1.708;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr14	61995691	.	C	CGTGTGT,CGTGTGTGTGT	660.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.878;ClippingRankSum=0.000;DP=31;ExcessHet=3.0103;FS=2.682;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.35;MQRankSum=0.000;QD=26.43;ReadPosRankSum=0.000;SOR=1.814;set=HC	GT:AD:AF:DP	1/2:3,13,9:0.52,0.36:25
chr14	61997226	rs1088680	C	T	3886.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr14	61997393	rs1088679	T	C	2549.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr14	62037297	rs798792	C	A	1108.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr14	62204748	rs372062450	TA	T	197.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.926;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=3.289;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.19;ReadPosRankSum=-0.740;SOR=0.291;set=HC	GT:AD:AF:DP	0/1:37,25:0.40:62
chr14	62205175	rs10138153	T	C	1419.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr14	62207557	rs11549465	C	T	7803.77	.	AC=1;AF=0.500;AN=2;DB;DP=570;set=Intersection	GT:AD:AF:DP	0/1:221,341:0.61:562
chr14	62208005	rs4902080	T	C	1680.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr14	62213848	rs2057482	T	C	1177.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:123,67:0.35:190
chr14	62213929	rs5809121	A	AT	136.73	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:24,10:0.29:34
chr14	62229113	rs17099207	G	A	621.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:45,27:0.38:72
chr14	62229138	.	A	AGAGGCGTGCGGGCTTCGGAGGCGTGCGGGCTTCGGAGGCGTGCGGGCTTCG	856.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.341;ClippingRankSum=0.000;DP=98;ExcessHet=3.0103;FS=12.904;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.60;ReadPosRankSum=-2.737;SOR=3.239;set=HC	GT:AD:AF:DP	0/1:60,8:0.12:68
chr14	62229434	rs7151978	G	C	1396.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:26,49:0.65:75
chr14	62233569	rs73324981	A	T	600.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.491;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.34;ReadPosRankSum=-2.056;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:22,31:0.58:53
chr14	62233806	rs1254677	A	G	303.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:17,13:0.43:30
chr14	62234159	rs10145554	A	G	439.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:9,19:0.68:28
chr14	62462766	rs8019076	T	C	2634.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr14	62463214	rs1889806	C	T	2161.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:217,115:0.35:332
chr14	62550877	rs2353778	G	A	2196.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr14	63174616	rs7161127	T	C	12159.77	.	AC=2;AF=1.00;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	1/1:0,443:1.00:443
chr14	63174960	rs4902176	C	T	1120.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:112,63:0.36:175
chr14	63179333	rs12435381	C	T	4186.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:104,189:0.65:293
chr14	63269189	rs114074278	G	T	2305.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:174,112:0.39:286
chr14	63269317	rs12588427	T	C	1998.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:58,96:0.62:154
chr14	63779846	rs5809192	G	GA	5671.73	.	AC=2;AF=1.00;AN=2;DB;DP=207;MQ=60.05;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr14	63784407	rs11382440	A	AG	16070.73	.	AC=2;AF=1.00;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	1/1:0,436:1.00:436
chr14	64009436	rs10142811	C	T	602.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.284;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=3.582;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.22;ReadPosRankSum=1.351;SOR=0.928;set=HC	GT:AD:AF:DP	0/1:26,33:0.56:59
chr14	64009489	rs1271563	T	G	926.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.360;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=6.415;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.52;ReadPosRankSum=-0.260;SOR=1.464;set=HC	GT:AD:AF:DP	0/1:28,46:0.62:74
chr14	64009521	rs1255720	A	G	1079.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.943;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=1.001;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.43;ReadPosRankSum=0.014;SOR=0.884;set=HC	GT:AD:AF:DP	0/1:21,49:0.70:70
chr14	64375985	rs2275018	G	T	4828.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr14	64407165	rs28365778	TA	T	1080.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.480;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=0.916;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.40;ReadPosRankSum=-0.536;SOR=0.548;set=HC	GT:AD:AF:DP	0/1:83,32:0.28:115
chr14	64407171	rs28365779	AC	A	1397.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.487;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=1.728;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.98;ReadPosRankSum=-0.986;SOR=0.907;set=HC	GT:AD:AF:DP	0/1:101,39:0.28:140
chr14	64407173	rs199901633	TA	T	1401.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.038;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=3.804;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.34;ReadPosRankSum=-1.636;SOR=1.080;set=HC	GT:AD:AF:DP	0/1:108,42:0.28:150
chr14	64407175	rs3742619	C	G	1410.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.964;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=3.804;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.41;ReadPosRankSum=-1.376;SOR=1.080;set=HC	GT:AD:AF:DP	0/1:108,42:0.28:150
chr14	64421392	rs1255874	G	A	3316.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:1,118:0.99:119
chr14	64423187	rs2792201	C	A	6235.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr14	64423316	rs34939365	G	A	377.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:54,22:0.29:76
chr14	64428154	rs1255884	A	G	2803.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr14	64447776	rs9944035	T	C	1375.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:96,71:0.43:167
chr14	64449237	rs368442429	C	CA	206.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.283;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=1.566;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.806;QD=3.50;ReadPosRankSum=0.592;SOR=1.207;set=HC	GT:AD:AF:DP	0/1:37,22:0.37:59
chr14	64457079	rs1255907	G	A	167.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:15,9:0.38:24
chr14	64457441	rs1273193	G	A	73.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:13,5:0.28:18
chr14	64460536	rs60596461	A	AT	142.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.630;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.74;ReadPosRankSum=-0.283;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:34,18:0.35:52
chr14	64462007	rs1255912	A	C	106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.446;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.37;ReadPosRankSum=-1.499;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:36,9:0.20:45
chr14	64476680	rs7146588	T	A	185.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:7,10:0.59:17
chr14	64491695	rs4902264	T	C	8660.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:0,334:1.00:334
chr14	64494278	rs10151127	C	T	2620.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr14	64494487	rs138272705	C	T	1503.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:127,81:0.39:208
chr14	64496749	rs4027402	C	T	5137.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr14	64496872	rs3866737	G	C	902.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr14	64497930	rs4027404	G	A	5877.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr14	64498037	rs4027405	G	A	6815.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr14	64501192	rs9783605	G	A	783.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr14	64519035	rs1890908	A	G	10965.77	.	AC=2;AF=1.00;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	1/1:0,397:1.00:397
chr14	64519455	rs3829767	A	G	4561.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr14	64520416	rs10138253	G	A	1300.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr14	64522550	rs10676670	T	TAATAA	1493.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.77;QD=53.35;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr14	64522674	rs8010911	G	C	7308.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr14	64522843	rs8010699	A	G	4889.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:1,178:0.99:179
chr14	64523094	rs7153376	G	A	609.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr14	64532107	rs1255972	A	G	1497.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr14	64537295	rs1255965	T	G	896.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr14	64537657	rs1255964	G	A	2182.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr14	64542872	rs1255960	G	A	726.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr14	64551688	rs1255953	C	T	4972.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr14	64551790	.	A	AT	36.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.541;ClippingRankSum=0.000;DP=125;ExcessHet=3.0103;FS=5.675;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.38;ReadPosRankSum=0.707;SOR=1.456;set=HC	GT:AD:AF:DP	0/1:81,16:0.16:97
chr14	64564527	rs8007972	C	T	368.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:16,14:0.47:30
chr14	64565582	rs9323444	T	C	2312.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr14	64568797	rs12587140	G	A	339.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:26,16:0.38:42
chr14	64612845	rs11629287	C	T	1386.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:121,73:0.38:194
chr14	64612858	rs10151658	C	A	1689.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:140,88:0.39:228
chr14	64637147	rs7161192	C	A	2435.77	.	AC=1;AF=0.500;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	0/1:226,132:0.37:358
chr14	64640665	rs7148122	C	G	517.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.804;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.93;ReadPosRankSum=0.479;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:29,29:0.50:58
chr14	64655161	rs1255986	C	T	302.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:51,19:0.27:70
chr14	64656682	rs11423254	A	AT	247.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.481;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=2.795;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=1.163;QD=3.54;ReadPosRankSum=-0.686;SOR=1.241;set=HC	GT:AD:AF:DP	0/1:43,27:0.39:70
chr14	64656855	rs2256191	T	C	2066.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:203,110:0.35:313
chr14	64657684	rs1255988	C	A	1725.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:156,92:0.37:248
chr14	64674981	rs1152595	T	C	877.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:29,34:0.54:63
chr14	64676098	rs1152592	A	G	758.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:140,50:0.26:190
chr14	64680848	rs1152591	A	G	4505.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr14	64681193	rs1152590	C	T	588.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:55,33:0.38:88
chr14	64681849	rs141530850	G	GA	1166.73	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:22,60:0.73:82
chr14	64686125	rs35648226	G	T	1231.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:80,66:0.45:146
chr14	64686207	rs915057	A	G	1278.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr14	64688175	rs1152588	G	C	2173.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr14	64691644	rs59086977	ATT	A,AT	1260.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.202;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=3.249;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.34;MQRankSum=0.535;QD=13.85;ReadPosRankSum=-0.941;SOR=1.419;set=HC	GT:AD:AF:DP	1/2:10,23,58:0.25,0.64:91
chr14	64694195	rs928554	C	T	8998.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,325:1.00:325
chr14	64699816	rs4986938	C	T	2259.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr14	64746933	rs34967796	G	GA	816.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:6,45:0.88:51
chr14	64805385	.	T	C	427	.	AC=1;AF=0.500;AN=2;BRF=0.42;FR=0.5000;HP=11;HapScore=3;MGOF=41;MMLQ=23;MQ=60.0;NF=0;NR=14;PP=427;QD=32.9836580391;SC=CCGCCCCCCCTCCCCGCAGAC;SbPval=1.0;Source=Platypus;TC=37;TCF=0;TCR=37;TR=14;WE=64805393;WS=64805374;set=Platypus	GT:AD:AF:DP	1/0:23,14:0.38:37
chr14	64814311	rs1256112	C	T	2743.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr14	64855041	rs1076991	T	C	1595.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:124,83:0.40:207
chr14	64879352	rs10678665	A	AT,ATT	552.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.015;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=2.494;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=13.48;ReadPosRankSum=-1.004;SOR=0.253;set=HC	GT:AD:AF:DP	1/2:8,15,18:0.37,0.44:41
chr14	64882380	rs1950902	A	G	2339.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:168,116:0.41:284
chr14	64891803	rs145807792	G	A	813.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:25,35:0.58:60
chr14	64908845	rs2236225	G	A	6874.77	.	AC=1;AF=0.500;AN=2;DB;DP=529;set=Intersection	GT:AD:AF:DP	0/1:212,306:0.59:518
chr14	64909151	rs2236224	G	A	1249.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:33,49:0.60:82
chr14	64911627	rs1256143	T	C	1827.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr14	64920665	rs1256146	G	A	1784.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:128,92:0.42:220
chr14	64926433	rs75480958	GTGCT	G	502.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr14	64935720	rs1256149	C	T	12530.77	.	AC=2;AF=1.00;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	1/1:0,444:1.00:444
chr14	64947181	rs8003790	C	T	569.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:66,33:0.33:99
chr14	64988114	rs10624421	C	CAA	1829.73	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:25,44:0.64:69
chr14	64988830	rs45512391	C	A	7543.77	.	AC=1;AF=0.500;AN=2;DB;DP=567;set=Intersection	GT:AD:AF:DP	0/1:222,338:0.60:560
chr14	65008251	rs1063391	C	T	7437.77	.	AC=1;AF=0.500;AN=2;DB;DP=591;set=Intersection	GT:AD:AF:DP	0/1:235,349:0.60:584
chr14	65009534	rs35270454	C	CT	818.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.877;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=1.767;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=0.000;QD=8.62;ReadPosRankSum=0.645;SOR=0.486;set=HC	GT:AD:AF:DP	0/1:44,51:0.54:95
chr14	65016702	rs7156953	T	G	3927.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:108,179:0.62:287
chr14	65028728	rs2038271	C	G	806.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:14,32:0.70:46
chr14	65031534	rs6573560	C	T	4929.77	.	AC=1;AF=0.500;AN=2;DB;DP=498;set=Intersection	GT:AD:AF:DP	0/1:258,236:0.48:494
chr14	65031572	rs4902293	A	G	4759.77	.	AC=1;AF=0.500;AN=2;DB;DP=476;set=Intersection	GT:AD:AF:DP	0/1:243,228:0.48:471
chr14	65032226	rs8007313	C	T	4361.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:136,194:0.59:330
chr14	65068221	rs11158545	C	A	5333.77	.	AC=1;AF=0.500;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	0/1:181,242:0.57:423
chr14	65068330	rs372346293	CTG	C	5140.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	0/1:208,133:0.39:341
chr14	65068333	.	T	C	5191.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=6.897;ClippingRankSum=0.000;DP=344;ExcessHet=3.0103;FS=0.836;MLEAC=1;MLEAF=0.500;MQ=58.06;MQRankSum=-2.928;QD=15.18;ReadPosRankSum=-0.075;SOR=0.764;set=HC	GT:AD:AF:DP	0/1:206,136:0.40:342
chr14	65068336	rs369006858	G	A	5277.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.798;ClippingRankSum=0.000;DB;DP=342;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.97;MQRankSum=-3.041;QD=15.52;ReadPosRankSum=-0.389;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:203,137:0.40:340
chr14	65068341	rs377267839	TTCTC	T	5192.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	0/1:204,138:0.40:342
chr14	65068346	.	G	A	5124.77	.	AC=1;AF=0.500;ALERT;AN=2;DP=343;set=Intersection	GT:AD:AF:DP	0/1:203,138:0.40:341
chr14	65204695	rs375352128	TGGA	T	32.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.119;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=4.688;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.88;ReadPosRankSum=0.882;SOR=1.550;set=HC	GT:AD:AF:DP	0/1:33,4:0.11:37
chr14	65268404	rs45539331	G	T	1226.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:13,46:0.78:59
chr14	65289978	rs179338	A	G	929.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr14	65453493	rs3215788	TG	T	712.73	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:33,30:0.48:63
chr14	65470831	rs12587546	A	G	829.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:77,48:0.38:125
chr14	65472874	rs56964460	C	CT	493.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.920;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.25;ReadPosRankSum=0.545;SOR=0.583;set=HC	GT:AD:AF:DP	0/1:37,42:0.53:79
chr14	65544367	rs762810	C	A	3546.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr14	65550816	rs7159443	T	A	1977.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr14	65568215	rs2781373	G	A	6217.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.46;SOR=0.790;set=HC	GT:AD:AF:DP	1/1:0,235:1.00:235
chr14	65733748	.	CTTCTTTCTTTCT	C	1378.73	.	AC=2;AF=1.00;AN=2;DP=278;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.09;SOR=5.549;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr14	65801811	rs12881755	A	G	2070.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.654;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.95;ReadPosRankSum=0.422;SOR=0.768;set=HC	GT:AD:AF:DP	1/1:2,81:0.98:83
chr14	65878807	rs1953416	C	T	10885.77	.	AC=2;AF=1.00;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	1/1:0,400:1.00:400
chr14	66028446	rs2229677	A	G	7770.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr14	66028505	rs3825639	T	C	4952.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr14	66082573	rs8012278	A	G	1248.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr14	66209190	rs1054218	C	G	1327.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr14	66424605	rs7141711	C	A	4288.77	.	AC=1;AF=0.500;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	0/1:136,191:0.58:327
chr14	66455502	rs17827111	A	G	186.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.899;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.78;ReadPosRankSum=1.507;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:12,12:0.50:24
chr14	66456464	.	C	CA	184.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.482;ClippingRankSum=0.000;DP=62;ExcessHet=3.0103;FS=3.081;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=1.197;QD=4.02;ReadPosRankSum=-0.382;SOR=2.080;set=HC	GT:AD:AF:DP	0/1:27,19:0.41:46
chr14	66479652	rs10130914	G	T	3942.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr14	66480197	rs3888365	G	A	3027.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:132,142:0.52:274
chr14	66480247	rs1807442	CA	TC	8257.77	.	AC=1;AF=0.500;AN=2;DB;DP=362;JOINED;set=Intersection	GT:AD:AF:DP	0/1:151,209:0.58:360
chr14	66480334	rs1807440	C	T	1635.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:170,89:0.34:259
chr14	67525263	rs193278294	A	C	278.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:29,13:0.31:42
chr14	67555878	rs12323748	A	G	363.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr14	67578727	rs41301475	A	G	2854.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:50,122:0.71:172
chr14	67769213	.	T	G	3607.77	.	AC=1;AF=0.500;AN=2;DP=306;set=Intersection	GT:AD:AF:DP	0/1:126,170:0.57:296
chr14	67807242	rs33973037	TA	T	3352.73	.	AC=1;AF=0.500;AN=2;DB;DP=345;MQ=60.03;set=Intersection	GT:AD:AF:DP	0/1:90,211:0.70:301
chr14	67814219	rs71129819	C	CT	474.86	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.678;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=10.79;ReadPosRankSum=0.503;SOR=0.927;set=HC	GT:AD:AF:DP	1/1:8,36:0.82:44
chr14	67819567	rs10718799	CA	C	843.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.861;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=3.263;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=15.92;ReadPosRankSum=0.533;SOR=2.215;set=HC	GT:AD:AF:DP	1/1:4,49:0.92:53
chr14	67848479	.	C	CT	49.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.040;ClippingRankSum=0.000;DP=266;ExcessHet=3.0103;FS=0.818;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.25;ReadPosRankSum=-0.153;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:162,34:0.17:196
chr14	67878717	rs12888674	A	G	8631.77	.	AC=1;AF=0.500;AN=2;DB;DP=709;set=Intersection	GT:AD:AF:DP	0/1:311,391:0.56:702
chr14	67878765	rs115017102	G	A	6518.77	.	AC=1;AF=0.500;AN=2;DB;DP=759;set=Intersection	GT:AD:AF:DP	0/1:416,336:0.45:752
chr14	68022410	rs3742868	C	T	2727.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr14	68028538	rs11628043	A	G	386.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.17;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr14	68035879	rs3825725	A	G	5176.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:2,203:0.99:205
chr14	68038697	rs2236234	C	G	2275.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr14	68038729	rs2236233	A	G	2480.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr14	68038779	rs2236232	T	G	1002.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:89,46:0.34:135
chr14	68039027	rs2236231	A	G	7591.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr14	68040193	rs55856716	G	T	196.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:23,11:0.32:34
chr14	68040389	rs11625701	T	C	1413.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:34,59:0.63:93
chr14	68040838	rs3742872	G	A	1426.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:96,73:0.43:169
chr14	68040925	rs3742873	G	A	3872.77	.	AC=1;AF=0.500;AN=2;DB;DP=548;set=Intersection	GT:AD:AF:DP	0/1:337,207:0.38:544
chr14	68041124	rs1555400	G	C	717.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:48,30:0.38:78
chr14	68042255	rs4902490	A	G	2467.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:51,109:0.68:160
chr14	68042496	rs4902491	A	G	2784.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr14	68042574	rs11158685	A	G	2649.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:141,133:0.49:274
chr14	68044005	rs4902492	C	T	6359.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr14	68045753	rs7152499	T	C	1780.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:43,76:0.64:119
chr14	68045840	rs10635755	C	CTTCT	10840.73	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr14	68045935	rs6573781	G	A	4232.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:1,159:0.99:160
chr14	68053124	rs749270	T	A	2807.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.548;ClippingRankSum=0.000;DB;DP=278;ExcessHet=3.0103;FS=0.476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.17;ReadPosRankSum=-1.345;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:187,89:0.32:276
chr14	68053149	rs749271	A	G	2449.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:145,71:0.33:216
chr14	68053802	rs734028	T	C	6743.77	.	AC=1;AF=0.500;AN=2;DB;DP=535;set=Intersection	GT:AD:AF:DP	0/1:223,306:0.58:529
chr14	68053977	rs6573783	A	C	11234.77	.	AC=2;AF=1.00;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	1/1:0,406:1.00:406
chr14	68056914	rs6573785	G	A	561.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:88,36:0.29:124
chr14	68057031	rs8010574	G	A	89.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.366;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.04;MQRankSum=0.000;QD=4.27;ReadPosRankSum=0.801;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:15,6:0.29:21
chr14	68060574	rs45474396	G	A	2831.77	.	AC=1;AF=0.500;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	0/1:230,145:0.39:375
chr14	68066949	rs11547225	G	A	7522.77	.	AC=1;AF=0.500;AN=2;DB;DP=581;set=Intersection	GT:AD:AF:DP	0/1:230,346:0.60:576
chr14	68066979	rs7154825	C	T	9950.77	.	AC=2;AF=1.00;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	1/1:0,363:1.00:363
chr14	68086657	rs17185182	C	G	2326.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:45,102:0.69:147
chr14	68113293	rs742869	G	A	6191.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr14	68115001	rs3742879	A	G	1401.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr14	68191109	rs11331653	GT	G	777.52	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.738;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=0.945;MLEAC=1;MLEAF=0.500;MQ=60.49;MQRankSum=1.606;QD=7.78;ReadPosRankSum=2.634;SOR=0.878;set=HC	GT:AD:AF:DP	0/1:26,74:0.74:100
chr14	68191368	rs61991867	G	A	2622.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr14	68192653	rs7156725	G	C	2238.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr14	68196636	rs718212	C	T	1770.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr14	68234539	rs3742883	T	C	11624.77	.	AC=2;AF=1.00;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	1/1:0,427:1.00:427
chr14	68236522	rs2295111	G	A	2152.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr14	68241648	rs200033000	C	CAA	507.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.272;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=8.451;MLEAC=1;MLEAF=0.500;MQ=60.67;MQRankSum=0.000;QD=16.38;ReadPosRankSum=0.851;SOR=1.414;set=HC	GT:AD:AF:DP	0/1:4,27:0.87:31
chr14	68249499	rs2235967	C	T	8023.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:2,301:0.99:303
chr14	68252979	.	C	CA	1366.73	.	AC=1;AF=0.500;AN=2;DP=147;set=Intersection	GT:AD:AF:DP	0/1:38,86:0.69:124
chr14	68257485	rs7143196	C	T	5195.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr14	68280848	rs181563	A	C	1891.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr14	68290372	rs17783124	T	G	4784.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:2,169:0.99:171
chr14	68290426	rs28604984	T	C	1337.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr14	68290464	rs28623567	G	A	657.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr14	68301767	rs34564590	G	GA	3810.73	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr14	68331437	rs961700	G	A	2914.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:2,104:0.98:106
chr14	68331675	rs1474939	A	T	3014.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.297;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=35.344;MLEAC=2;MLEAF=1.000;MQ=56.81;MQRankSum=-1.210;QD=24.31;ReadPosRankSum=2.514;SOR=3.010;set=HC	GT:AD:AF:DP	1/1:5,119:0.96:124
chr14	68773296	rs3837659	AC	A	8728.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	0/1:155,220:0.59:375
chr14	68773298	rs60593979	C	G	8737.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	0/1:156,220:0.59:376
chr14	68773353	rs2180770	G	A	3719.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:107,165:0.61:272
chr14	68773469	rs3784104	A	G	1143.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:20,46:0.70:66
chr14	68878369	rs10146772	C	A	192.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:9,10:0.53:19
chr14	68934690	rs2074562	A	G	416.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr14	68935789	rs2525505	T	C	3655.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr14	68944321	.	AT	A	822.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.646;ClippingRankSum=0.000;DP=189;ExcessHet=3.0103;FS=1.221;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.47;ReadPosRankSum=1.178;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:116,68:0.37:184
chr14	68944343	rs67962762	CT	C	538.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.467;ClippingRankSum=0.000;DB;DP=268;ExcessHet=3.0103;FS=2.997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.13;ReadPosRankSum=1.012;SOR=0.548;set=HC	GT:AD:AF:DP	0/1:163,90:0.36:253
chr14	68963913	rs45568038	C	T	2087.77	.	AC=1;AF=0.500;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	0/1:229,119:0.34:348
chr14	69012355	rs2525529	C	G	3118.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:94,142:0.60:236
chr14	69077627	rs17106015	G	A	566.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:15,16:0.52:31
chr14	69117298	rs79769103	G	A	304.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:22,13:0.37:35
chr14	69117387	rs8021657	A	G	919.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:87,48:0.36:135
chr14	69117450	rs74506607	T	C	1425.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:124,76:0.38:200
chr14	69117512	rs8023214	T	C	1383.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:119,74:0.38:193
chr14	69259502	rs11851414	T	C	466.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:33,24:0.42:57
chr14	69259533	rs3215689	T	TG	857.73	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:47,36:0.43:83
chr14	69259662	rs1051533	C	A	1125.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:80,58:0.42:138
chr14	69262441	rs3742887	A	G	2766.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr14	69263074	rs6573857	G	A	671.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr14	69328441	rs393673	A	G	6409.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr14	69328594	rs412638	G	A	8220.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr14	69328613	rs440689	C	T	7963.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr14	69328777	rs143969515	C	CTT	207.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.384;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.69;ReadPosRankSum=0.957;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:9,18:0.67:27
chr14	69329116	rs424806	T	C	482.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:15,20:0.57:35
chr14	69329149	rs1742501	C	T	1634.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr14	69345647	rs12586591	C	T	4297.77	.	AC=1;AF=0.500;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	0/1:151,198:0.57:349
chr14	69352230	rs15993	G	A	2763.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:82,128:0.61:210
chr14	69376658	rs743128	A	C	4711.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr14	69392264	rs4899272	T	G	6124.77	.	AC=1;AF=0.500;AN=2;DB;DP=488;set=Intersection	GT:AD:AF:DP	0/1:201,283:0.58:484
chr14	69444517	rs35512297	T	TC	75.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.360;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=2.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.83;ReadPosRankSum=-1.264;SOR=0.204;set=HC	GT:AD:AF:DP	0/1:7,6:0.46:13
chr14	69444661	rs11628773	G	A	4153.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:92,179:0.66:271
chr14	69445057	rs11620922	G	C	3423.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.858;ClippingRankSum=0.000;DB;DP=251;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.92;ReadPosRankSum=0.635;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:88,158:0.64:246
chr14	69445118	rs1983700	C	T	1100.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:30,46:0.61:76
chr14	69445616	rs59714290	C	CGGGGCTG	1263.73	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:28,30:0.52:58
chr14	69445646	rs4902685	A	G	2929.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr14	69521345	rs61741172	G	A	1320.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:97,64:0.40:161
chr14	69529031	rs72718277	T	C	1013.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:26,40:0.61:66
chr14	69676541	rs199733370	TA	T	150.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.393;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=3.261;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.71;ReadPosRankSum=0.076;SOR=0.284;set=HC	GT:AD:AF:DP	0/1:15,17:0.53:32
chr14	69695792	rs3742899	G	A	2490.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:60,109:0.64:169
chr14	69697453	rs1013762	C	G	587.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:20,22:0.52:42
chr14	69704553	rs8007859	G	T	2873.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:83,126:0.60:209
chr14	69798284	rs1147461	G	A	1359.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:132,72:0.35:204
chr14	69799756	rs141209603	C	G	2415.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:67,117:0.64:184
chr14	69799806	rs2274440	C	T	3133.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:99,147:0.60:246
chr14	69799892	rs1275677	A	G	2224.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:71,102:0.59:173
chr14	69813678	rs11625928	A	G	1615.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:44,70:0.61:114
chr14	69818891	rs76571673	G	A	816.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:41,35:0.46:76
chr14	69921479	rs2232057	A	G	764.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:52,36:0.41:88
chr14	69921674	rs2232058	T	C	1089.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:66,57:0.46:123
chr14	69988954	rs10146531	T	G	12348.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,326:1.00:326
chr14	69988973	rs144771865	T	C	4994.77	.	AC=1;AF=0.500;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	0/1:148,226:0.60:374
chr14	69992873	rs8004574	A	G	1886.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr14	69994473	rs1885400	C	G	4654.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr14	69995112	rs55727771	G	A	1825.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:51,84:0.62:135
chr14	70171418	rs2275124	T	C	1472.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:188,88:0.32:276
chr14	70245877	rs113692047	TA	T	140.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.577;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=0.924;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.14;ReadPosRankSum=1.907;SOR=0.865;set=HC	GT:AD:AF:DP	0/1:91,32:0.26:123
chr14	70459370	rs227419	T	C	587.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr14	70478173	rs139924326	CA	C	3909.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.286;ClippingRankSum=0.000;DB;DP=295;ExcessHet=3.0103;FS=17.676;MLEAC=1;MLEAF=0.500;MQ=64.63;MQRankSum=13.359;QD=14.11;ReadPosRankSum=-0.955;SOR=0.191;set=HC	GT:AD:AF:DP	0/1:116,161:0.58:277
chr14	70478175	.	AC	TC	2980	.	AC=1;AF=0.500;AN=2;BRF=0.44;FR=0.5000,0.5000;HP=8;HapScore=3;MGOF=9;MMLQ=21;MQ=63.17;NF=21,32;NR=86,86;PP=2980,2962;QD=20;SC=GCCCCTCCCAACCCCCCCCAT;SbPval=0.39;Source=Platypus;TC=224;TCF=40;TCR=184;TR=107,118;WE=70478192;WS=70478155;set=Platypus	GT:AD:AF:DP	0/1:181,118:0.39:299
chr14	70478175	.	AC	A	2980	.	AC=1;AF=0.500;AN=2;BRF=0.44;FR=0.5000,0.5000;HP=8;HapScore=3;MGOF=9;MMLQ=21;MQ=63.17;NF=21,32;NR=86,86;PP=2980,2962;QD=20;SC=GCCCCTCCCAACCCCCCCCAT;SbPval=0.39;Source=Platypus;TC=224;TCF=40;TCR=184;TR=107,118;WE=70478192;WS=70478155;set=Platypus	GT:AD:AF:DP	0/1:117,107:0.48:224
chr14	70478176	rs116375526	C	T	3918.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.803;ClippingRankSum=0.000;DB;DP=288;ExcessHet=3.0103;FS=17.676;MLEAC=1;MLEAF=0.500;MQ=64.74;MQRankSum=13.359;QD=14.15;ReadPosRankSum=-0.643;SOR=0.191;set=HC	GT:AD:AF:DP	0/1:116,161:0.58:277
chr14	70480215	rs1885482	T	A	509.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:50,30:0.38:80
chr14	70490264	rs2281663	A	G	585.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:9,23:0.72:32
chr14	70496867	rs227402	C	T	1239.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.728;ClippingRankSum=0.000;DB;DP=249;ExcessHet=3.0103;FS=1.711;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=-0.631;QD=5.00;ReadPosRankSum=0.120;SOR=0.825;set=HC	GT:AD:AF:DP	0/1:176,72:0.29:248
chr14	70496919	rs59217337	CT	C	1794.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.634;ClippingRankSum=0.000;DB;DP=269;ExcessHet=3.0103;FS=4.076;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=0.725;QD=8.27;ReadPosRankSum=1.413;SOR=0.537;set=HC	GT:AD:AF:DP	0/1:51,166:0.76:217
chr14	70515779	rs61977411	G	A	4763.77	.	AC=1;AF=0.500;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	0/1:153,219:0.59:372
chr14	70517985	rs61977412	T	A	649.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:19,26:0.58:45
chr14	70522353	rs998919	T	G	880.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr14	70522484	rs1000521	A	G	1078.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.545;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.92;ReadPosRankSum=1.714;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:100,56:0.36:156
chr14	70522684	rs10142899	A	C	1967.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr14	70530378	rs41285486	G	C	358.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.631;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.81;ReadPosRankSum=1.949;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:11,17:0.61:28
chr14	70530706	rs150956	C	G	897.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr14	70634087	rs2114024	A	G	11864.77	.	AC=2;AF=1.00;AN=2;DB;DP=448;set=Intersection	GT:AD:AF:DP	1/1:0,442:1.00:442
chr14	70634801	rs17765575	T	C	4332.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:128,198:0.61:326
chr14	70712880	rs2296918	A	C	13754.77	.	AC=2;AF=1.00;AN=2;DB;DP=483;set=Intersection	GT:AD:AF:DP	1/1:0,474:1.00:474
chr14	70713858	rs61979492	T	C	14058.77	.	AC=2;AF=1.00;AN=2;DB;DP=517;set=Intersection	GT:AD:AF:DP	1/1:2,508:1.00:510
chr14	70713992	rs4902799	C	A	5934.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:3,214:0.99:217
chr14	70714162	rs4899340	A	G	1825.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.64;QD=42.46;SOR=0.739;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr14	70714172	rs4899341	T	C	1793.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.15;QD=42.71;SOR=1.005;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr14	70793004	rs4749	A	G	773.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.409;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=1.047;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.09;ReadPosRankSum=0.244;SOR=0.919;set=HC	GT:AD:AF:DP	0/1:28,36:0.56:64
chr14	70795756	rs7157430	G	T	68.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.826;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.91;ReadPosRankSum=0.787;SOR=0.188;set=HC	GT:AD:AF:DP	0/1:10,4:0.29:14
chr14	70795769	rs56128802	T	A	313.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.269;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.51;ReadPosRankSum=-0.786;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:11,8:0.42:19
chr14	70795772	rs10648369	T	TAC	332.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.962;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.84;ReadPosRankSum=-0.783;SOR=0.465;set=HC	GT:AD:AF:DP	0/1:12,9:0.43:21
chr14	70924237	rs3751520	C	A	103.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.770;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=1.185;MLEAC=1;MLEAF=0.500;MQ=51.19;MQRankSum=-4.705;QD=1.13;ReadPosRankSum=-0.971;SOR=0.960;set=HC	GT:AD:AF:DP	0/1:80,12:0.13:92
chr14	70924249	rs3751521	A	G	2793.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr14	70924450	rs58247196	C	T	195.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.276;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.25;MQRankSum=-5.409;QD=2.00;ReadPosRankSum=1.177;SOR=0.761;set=HC	GT:AD:AF:DP	0/1:77,21:0.21:98
chr14	70924462	rs3751523	A	G	878.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:50,41:0.45:91
chr14	70924501	rs8010994	C	G	1938.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:17,70:0.80:87
chr14	70924566	rs3829452	CA	GT	3110.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;JOINED;set=Intersection	GT:AD:AF:DP	0/1:64,80:0.56:144
chr14	70924693	rs45480894	T	C	3573.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.897;ClippingRankSum=0.000;DB;DP=310;ExcessHet=3.0103;FS=4.069;MLEAC=1;MLEAF=0.500;MQ=56.79;MQRankSum=-13.458;QD=11.72;ReadPosRankSum=-0.676;SOR=0.504;set=HC	GT:AD:AF:DP	0/1:206,99:0.32:305
chr14	70924696	rs77892318	GA	AG	3672.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.294;ClippingRankSum=0.000;DB;DP=309;ExcessHet=3.0103;FS=2.041;JOINED;MLEAC=1;MLEAF=0.500;MQ=56.61;MQRankSum=-13.840;QD=12.04;ReadPosRankSum=-1.061;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:205,100:0.33:305
chr14	70924852	rs3829455	A	C	1771.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:235,96:0.29:331
chr14	70924955	rs114864695	A	C	4892.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:140,202:0.59:342
chr14	70925257	rs12436346	A	G	5482.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.675;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.23;MQRankSum=-2.015;QD=32.83;ReadPosRankSum=-1.032;SOR=1.553;set=HC	GT:AD:AF:DP	1/1:2,165:0.99:167
chr14	70925818	rs2022624	T	C	5472.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.723;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=4.620;MLEAC=2;MLEAF=1.000;MQ=40.17;MQRankSum=-3.797;QD=33.58;ReadPosRankSum=-0.964;SOR=2.951;set=HC	GT:AD:AF:DP	1/1:2,161:0.99:163
chr14	70936714	rs2293873	T	C	1514.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:42,68:0.62:110
chr14	70937121	rs7152848	T	C	2323.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:86,109:0.56:195
chr14	70937413	rs7153448	T	A	10216.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.134;ClippingRankSum=0.000;DB;DP=423;ExcessHet=3.0103;FS=1.133;MLEAC=1;MLEAF=0.500;MQ=59.73;MQRankSum=-2.229;QD=24.38;ReadPosRankSum=-0.745;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:159,260:0.62:419
chr14	70937420	rs7153459	T	C	10190.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.130;ClippingRankSum=0.000;DB;DP=426;ExcessHet=3.0103;FS=0.537;MLEAC=1;MLEAF=0.500;MQ=59.82;MQRankSum=-1.574;QD=24.15;ReadPosRankSum=-0.928;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:161,261:0.62:422
chr14	70937494	rs8015742	T	G	10681.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:0,380:1.00:380
chr14	70937725	rs10467821	T	C	5631.77	.	AC=1;AF=0.500;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	0/1:192,261:0.58:453
chr14	70937988	rs28473545	G	A	1112.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:17,45:0.73:62
chr14	70991650	rs74062730	A	C	1161.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.246;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.794;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.49;ReadPosRankSum=0.557;SOR=0.575;set=HC	GT:AD:AF:DP	0/1:38,55:0.59:93
chr14	71050892	rs11158867	A	G	1303.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr14	71051088	rs45523543	A	G	814.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr14	71052278	rs112233021	T	TTTTTC	2814.73	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.10;QD=41.39;SOR=1.877;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr14	71064314	rs1007402	C	T	726.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:5,30:0.86:35
chr14	71067156	rs5809489	GA	G	956.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.266;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.37;MQRankSum=1.786;QD=6.98;ReadPosRankSum=1.557;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:65,72:0.53:137
chr14	71067483	rs150061450	GGGCAGGAGAGAGGCAGGGGGT	G	156.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.847;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.72;MQRankSum=0.674;QD=15.67;ReadPosRankSum=-1.383;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:5,5:0.50:10
chr14	71109153	rs4902834	C	G	4920.77	.	AC=1;AF=0.500;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	0/1:236,236:0.50:472
chr14	71109276	rs3742852	G	T	4940.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.009;ClippingRankSum=0.000;DB;DP=442;ExcessHet=3.0103;FS=4.101;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.63;ReadPosRankSum=-0.294;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:193,232:0.55:425
chr14	71109352	rs3742851	G	C	1354.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:83,58:0.41:141
chr14	71197755	rs1476610	T	G	1655.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr14	71200551	.	GT	G	784.73	.	AC=1;AF=0.500;AN=2;DP=93;set=Intersection	GT:AD:AF:DP	0/1:60,31:0.34:91
chr14	71202650	rs4141095	C	T	4577.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr14	71208996	rs4899368	A	G	1888.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr14	71215526	rs5809495	G	GT	553.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.448;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.32;ReadPosRankSum=0.465;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:67,37:0.36:104
chr14	71215822	rs79518608	T	C	282.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:8,11:0.58:19
chr14	71216863	rs10630067	C	CAT	5721.73	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr14	71227913	rs3814872	A	C	7521.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr14	71232147	rs55941560	C	T	514.73	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:68,33:0.33:101
chr14	71275773	rs3832971	GCCT	G	55.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.754;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=1.365;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.05;ReadPosRankSum=1.306;SOR=0.428;set=HC	GT:AD:AF:DP	0/1:43,10:0.19:53
chr14	71374702	rs2526882	G	A	8118.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr14	71485692	rs1859914	A	T	2225.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr14	71517327	.	G	GT	261.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.351;ClippingRankSum=0.000;DP=242;ExcessHet=3.0103;FS=0.700;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.12;ReadPosRankSum=0.534;SOR=0.796;set=HC	GT:AD:AF:DP	0/1:181,53:0.23:234
chr14	72040525	rs6574016	G	A	992.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr14	72055468	rs1859643	A	C	11491.77	.	AC=2;AF=1.00;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	1/1:0,411:1.00:411
chr14	72117156	rs8017465	T	C	4474.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:2,165:0.99:167
chr14	72151980	.	T	C	1624.77	.	AC=1;AF=0.500;AN=2;DP=124;set=Intersection	GT:AD:AF:DP	0/1:50,70:0.58:120
chr14	72932330	.	G	GTGGA,GTGGATGGATGGA	2926.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.585;ClippingRankSum=0.000;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=61.45;MQRankSum=0.773;QD=41.81;ReadPosRankSum=0.755;SOR=1.201;set=HC	GT:AD:AF:DP	1/2:3,30,37:0.43,0.53:70
chr14	72936954	rs8012037	T	C	652.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr14	72939495	rs10131300	C	A	3893.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr14	72941206	rs141283571	G	GA	519.80	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:6,28:0.82:34
chr14	72941207	rs8008067	G	A	1409.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr14	72945012	rs2302143	T	C	948.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:63,50:0.44:113
chr14	73006729	rs72106336	CT	C	87.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.213;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=4.964;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.43;ReadPosRankSum=2.704;SOR=0.950;set=HC	GT:AD:AF:DP	0/1:163,40:0.20:203
chr14	73006865	rs56953388	CT	C	500.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.453;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=6.307;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.96;ReadPosRankSum=-0.609;SOR=0.317;set=HC	GT:AD:AF:DP	0/1:105,64:0.38:169
chr14	73007198	rs113373446	GA	G	512.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.201;ClippingRankSum=0.000;DB;DP=265;ExcessHet=3.0103;FS=3.830;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=2.854;QD=2.09;ReadPosRankSum=0.176;SOR=0.449;set=HC	GT:AD:AF:DP	0/1:165,80:0.33:245
chr14	73014033	rs184519961	G	C	1808.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.299;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=3.837;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.95;ReadPosRankSum=2.136;SOR=0.376;set=HC	GT:AD:AF:DP	0/1:38,83:0.69:121
chr14	73079291	rs10649920	G	GAA	17274.73	.	AC=2;AF=1.00;AN=2;DB;DP=478;set=Intersection	GT:AD:AF:DP	1/1:0,453:1.00:453
chr14	73138189	rs1060570	C	A	7092.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr14	73181428	rs4903049	T	G	2405.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr14	73190444	rs35285137	G	GA	995.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.915;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=2.567;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.97;ReadPosRankSum=1.358;SOR=0.485;set=HC	GT:AD:AF:DP	0/1:61,64:0.51:125
chr14	73198506	rs6574094	T	C	6084.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:2,234:0.99:236
chr14	73220020	rs3742836	A	G	5494.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr14	73220153	rs3742835	C	T	2714.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr14	73220188	rs41314521	A	G	1835.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr14	73240509	rs12433339	C	T	340.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:4,16:0.80:20
chr14	73358945	rs11158986	A	C	1943.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:180,105:0.37:285
chr14	73360819	rs5809598	T	TTGTC	21896.73	.	AC=2;AF=1.00;AN=2;DB;DP=547;set=Intersection	GT:AD:AF:DP	1/1:0,489:1.00:489
chr14	73360842	rs78898062	G	T	2545.77	.	AC=1;AF=0.500;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	0/1:269,138:0.34:407
chr14	73360949	rs2215901	A	G	748.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:57,32:0.36:89
chr14	73408355	rs3742832	G	A	699.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:51,34:0.40:85
chr14	73418732	rs3214336	GT	G	107.73	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:25,11:0.31:36
chr14	73440864	rs12931	C	T	15241.77	.	AC=2;AF=1.00;AN=2;DB;DP=582;set=Intersection	GT:AD:AF:DP	1/1:0,577:1.00:577
chr14	73491270	rs80259615	C	T	1539.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:82,75:0.48:157
chr14	73491307	rs3742828	C	A	1040.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:37,43:0.54:80
chr14	73538246	.	G	A	878.77	.	AC=1;AF=0.500;AN=2;DP=108;set=Intersection	GT:AD:AF:DP	0/1:67,41:0.38:108
chr14	73626905	rs8011335	T	A	338.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:20,16:0.44:36
chr14	73664853	rs165932	G	T	2902.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr14	73675703	rs28532025	G	A	570.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:10,25:0.71:35
chr14	73712973	rs142277220	C	CAT	106.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.097;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.30;ReadPosRankSum=0.197;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:70,12:0.15:82
chr14	73716774	rs177393	G	A	7912.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr14	73717901	rs12432062	G	A	1637.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:71,70:0.50:141
chr14	73718514	rs146906766	G	A	2852.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:86,124:0.59:210
chr14	73718879	rs2242610	A	G	949.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:54,43:0.44:97
chr14	73719303	rs8017937	G	A	1127.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:84,53:0.39:137
chr14	73719323	rs11159011	G	A	1242.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:127,64:0.34:191
chr14	73721162	rs2293796	G	A	571.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:64,30:0.32:94
chr14	73725659	rs2293797	C	A	1610.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:184,94:0.34:278
chr14	73727509	rs177389	T	C,G	3911.77	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=176;set=Intersection	GT:AF:DP	1/2:0.67,0.33:172
chr14	73728014	rs177388	C	T	4081.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:141,181:0.56:322
chr14	73728957	rs177387	G	A	3586.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr14	73730290	rs177385	C	A	10451.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	1/1:1,380:1.00:381
chr14	73732302	rs177383	C	G	3875.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr14	73735366	rs4903104	C	T	3637.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:127,176:0.58:303
chr14	73957682	rs10144461	C	G	1854.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr14	73957772	rs10144469	A	G	7720.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr14	73957981	rs150704374	G	GC	6957.73	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr14	73958375	rs758109	T	C	10621.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	1/1:0,378:1.00:378
chr14	73958812	rs3813563	T	C	29316.77	.	AC=2;AF=1.00;AN=2;DB;DP=1085;set=Intersection	GT:AD:AF:DP	1/1:4,1065:1.00:1069
chr14	73959703	rs10631979	C	CTT	1951.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.583;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=3.010;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=0.000;QD=12.84;ReadPosRankSum=0.993;SOR=1.082;set=HC	GT:AD:AF:DP	0/1:44,108:0.71:152
chr14	73961765	rs11365617	CA	C	616.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.453;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.33;MQRankSum=0.354;QD=18.69;ReadPosRankSum=-0.626;SOR=2.242;set=HC	GT:AD:AF:DP	1/1:1,32:0.97:33
chr14	73961821	rs4519287	T	C	3766.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr14	73961841	rs1019056	T	C	4988.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr14	73963383	rs8014577	T	C	2250.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr14	73989859	rs1074501	C	T	2421.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr14	74004595	rs72738342	C	T	20138.77	.	AC=2;AF=1.00;AN=2;DB;DP=770;set=Intersection	GT:AD:AF:DP	1/1:0,768:1.00:768
chr14	74004639	.	CTG	C	341.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.033;ClippingRankSum=0.000;DP=627;ExcessHet=3.0103;FS=0.882;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.68;ReadPosRankSum=-0.692;SOR=0.833;set=HC	GT:AD:AF:DP	0/1:440,62:0.12:502
chr14	74036674	rs34765603	G	GC	631.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.828;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=21.793;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=3.382;QD=4.51;ReadPosRankSum=-0.244;SOR=4.005;set=HC	GT:AD:AF:DP	0/1:103,37:0.26:140
chr14	74040341	rs34585397	T	C	2032.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:196,104:0.35:300
chr14	74042189	rs7494	A	G	133.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.417;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=1.418;MLEAC=1;MLEAF=0.500;MQ=49.18;MQRankSum=0.090;QD=2.73;ReadPosRankSum=0.444;SOR=0.405;set=HC	GT:AD:AF:DP	0/1:37,12:0.24:49
chr14	74058832	rs3742819	C	T	1193.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:96,61:0.39:157
chr14	74061968	rs2010070	T	C	3073.77	.	AC=1;AF=0.500;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	0/1:207,154:0.43:361
chr14	74083846	rs12891009	C	T	1199.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:118,68:0.37:186
chr14	74086623	rs67656337	C	CT	97.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.400;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.25;ReadPosRankSum=0.563;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:13,10:0.43:23
chr14	74121535	rs185924269	T	C	570.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.558;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=2.197;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.51;ReadPosRankSum=0.411;SOR=1.049;set=HC	GT:AD:AF:DP	0/1:26,34:0.57:60
chr14	74179340	.	CCTT	C	2506.73	.	AC=1;AF=0.500;AN=2;DP=423;set=Intersection	GT:AD:AF:DP	0/1:271,141:0.34:412
chr14	74192165	rs10136165	T	C	503.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:23,21:0.48:44
chr14	74192968	rs143224767	AGGG	A	1644.73	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:52,45:0.46:97
chr14	74192994	rs2336074	A	G	971.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:39,39:0.50:78
chr14	74193427	rs887508	A	G	1851.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:176,103:0.37:279
chr14	74196686	rs2075025	T	C	2165.77	.	AC=1;AF=0.500;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	0/1:226,120:0.35:346
chr14	74196792	rs8019058	T	C	2137.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:147,103:0.41:250
chr14	74196844	rs6574140	T	C	1505.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:103,73:0.41:176
chr14	74196872	rs76529453	G	C	952.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:67,48:0.42:115
chr14	74203789	rs17782124	G	A	1801.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:112,81:0.42:193
chr14	74205198	rs72365435	GCAGCCGCC	G	598.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:26,17:0.40:43
chr14	74205878	rs17782128	C	T	1291.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:152,75:0.33:227
chr14	74206481	rs758774	T	C	2736.77	.	AC=1;AF=0.500;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	0/1:223,140:0.39:363
chr14	74206658	rs758773	G	A	2387.77	.	AC=1;AF=0.500;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	0/1:231,131:0.36:362
chr14	74206847	rs758772	A	G	495.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:71,29:0.29:100
chr14	74225354	.	G	C	1053.77	.	AC=1;AF=0.500;AN=2;DP=152;set=Intersection	GT:AD:AF:DP	0/1:95,53:0.36:148
chr14	74340797	rs11159042	A	T	2044.77	.	AC=1;AF=0.500;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	0/1:220,121:0.35:341
chr14	74343981	rs45542836	T	A	327.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:13,16:0.55:29
chr14	74349227	rs8005140	G	A	422.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:34,22:0.39:56
chr14	74358703	rs140665239	CCT	C	1751.73	.	AC=1;AF=0.500;AN=2;DB;DP=121;MQ=60.36;set=Intersection	GT:AD:AF:DP	0/1:64,54:0.46:118
chr14	74361126	.	C	CT	120.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.883;ClippingRankSum=0.000;DP=84;ExcessHet=3.0103;FS=1.419;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.37;ReadPosRankSum=0.633;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:35,16:0.31:51
chr14	74371467	rs35370876	TA	T	124.73	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:11,7:0.39:18
chr14	74375956	rs2302136	A	C	741.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:39,31:0.44:70
chr14	74388908	rs1127392	T	C	773.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:84,46:0.35:130
chr14	74399212	rs6574155	C	T	1676.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:107,85:0.44:192
chr14	74399291	rs2336547	G	A	597.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:45,29:0.39:74
chr14	74404756	rs28927675	T	C	3368.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.122;ClippingRankSum=0.000;DB;DP=462;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.40;ReadPosRankSum=0.163;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:269,186:0.41:455
chr14	74409032	rs740506	G	A	429.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:44,23:0.34:67
chr14	74413129	rs7146634	C	G	2397.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:194,118:0.38:312
chr14	74413420	rs7148485	T	C	80.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:11,5:0.31:16
chr14	74416600	rs11621743	T	C	753.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:90,38:0.30:128
chr14	74422201	rs148540645	C	T	1990.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:155,102:0.40:257
chr14	74424938	rs3180946	T	C	2229.77	.	AC=1;AF=0.500;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	0/1:243,123:0.34:366
chr14	74425056	rs3764859	C	A	611.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:85,33:0.28:118
chr14	74428286	rs7141392	A	G	1877.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:128,88:0.41:216
chr14	74428445	rs8500	G	A	2678.77	.	AC=1;AF=0.500;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	0/1:217,140:0.39:357
chr14	74433552	rs13743	A	T	225.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:8,10:0.56:18
chr14	74433859	rs3742813	T	C	1260.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:165,70:0.30:235
chr14	74439495	rs11623794	G	A	639.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:83,38:0.31:121
chr14	74441537	rs2074933	T	C	1688.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:133,87:0.40:220
chr14	74441684	rs2074932	G	A	1913.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:89,88:0.50:177
chr14	74443298	.	GT	G	55.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.415;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;FS=1.909;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.74;ReadPosRankSum=-1.293;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:22,10:0.31:32
chr14	74444090	rs201751093	G	GA	280.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.927;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=1.139;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.07;ReadPosRankSum=-0.283;SOR=0.927;set=HC	GT:AD:AF:DP	0/1:41,28:0.41:69
chr14	74449664	rs12431489	A	G	890.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:33,41:0.55:74
chr14	74454819	rs12434581	T	A	249.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:14,11:0.44:25
chr14	74525978	rs186963818	T	C	1407.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.839;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=4.608;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.53;ReadPosRankSum=-0.824;SOR=0.420;set=HC	GT:AD:AF:DP	0/1:90,75:0.45:165
chr14	74527203	rs8017248	G	A	1755.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr14	74545063	.	C	CT	107.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.953;ClippingRankSum=0.000;DP=120;ExcessHet=3.0103;FS=3.947;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.10;ReadPosRankSum=-0.207;SOR=1.325;set=HC	GT:AD:AF:DP	0/1:78,20:0.20:98
chr14	74665543	rs10145171	G	A	2990.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr14	74711883	rs35435463	C	T	5626.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr14	74726515	rs11383441	G	GC	3255.73	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr14	74753278	rs929449	T	C	23095.77	.	AC=2;AF=1.00;AN=2;DB;DP=862;set=Intersection	GT:AD:AF:DP	1/1:0,858:1.00:858
chr14	74767128	rs7158118	G	A	353.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:24,17:0.41:41
chr14	74874540	rs11621669	A	G	4174.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr14	74874707	rs2884545	A	G	7496.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr14	74875955	.	A	AT	149.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.065;ClippingRankSum=0.000;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.44;ReadPosRankSum=0.618;SOR=0.579;set=HC	GT:AD:AF:DP	0/1:80,24:0.23:104
chr14	74876181	rs12590672	T	G	7536.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr14	74876501	rs4026651	G	C	1412.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr14	74969167	rs2286412	C	T	1599.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr14	74969268	rs77172932	C	T	8221.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:2,301:0.99:303
chr14	74970448	rs5809669	G	GC	835.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr14	74973556	.	ATG	A	1704.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.224;ClippingRankSum=0.000;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.05;MQRankSum=1.422;QD=23.04;ReadPosRankSum=1.812;SOR=0.509;set=HC	GT:AD:AF:DP	0/1:8,66:0.89:74
chr14	74973740	rs3815329	A	G	2806.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:1,106:0.99:107
chr14	75016482	rs2196861	T	C	5096.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr14	75017650	rs934999	G	C	3017.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr14	75139936	rs11844127	C	G	1316.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr14	75151047	rs9671386	G	A	190.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr14	75159007	rs2270424	G	A	2427.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr14	75179734	rs2270425	C	G	8474.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:1,298:1.00:299
chr14	75182937	rs2287400	G	A	1481.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr14	75200653	rs3784021	C	T	7167.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr14	75200697	rs3825708	G	A	10533.77	.	AC=2;AF=1.00;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	1/1:1,396:1.00:397
chr14	75245368	rs57404741	C	T	987.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:24,39:0.62:63
chr14	75248669	rs2287401	G	T	16068.77	.	AC=1;AF=0.500;AN=2;DB;DP=1257;set=Intersection	GT:AD:AF:DP	0/1:498,743:0.60:1241
chr14	75276079	rs957345	C	G	1533.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:127,75:0.37:202
chr14	75278302	rs8022046	G	A	3089.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr14	75279395	rs2302834	T	A	6967.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr14	75282873	rs200535544	ATT	A,AT	1739.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.865;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.08;MQRankSum=0.363;QD=14.14;ReadPosRankSum=0.782;SOR=0.819;set=HC	GT:AD:AF:DP	1/2:12,34,77:0.28,0.63:123
chr14	75287730	rs79860790	CT	C	124.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.399;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=4.374;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.23;ReadPosRankSum=0.869;SOR=0.242;set=HC	GT:AD:AF:DP	0/1:38,18:0.32:56
chr14	75349432	rs8007114	T	C	315.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:35,20:0.36:55
chr14	75355767	rs57898381	TA	T	133.80	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr14	75355900	rs377574623	T	C	285.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:16,16:0.50:32
chr14	75359670	rs2230237	G	A	11516.77	.	AC=2;AF=1.00;AN=2;DB;DP=442;set=Intersection	GT:AD:AF:DP	1/1:0,441:1.00:441
chr14	75359730	rs3742788	C	T	3570.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:115,167:0.59:282
chr14	75359757	rs58288168	ACT	A	2322.73	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:108,67:0.38:175
chr14	75361177	rs2070599	C	G	9864.77	.	AC=2;AF=1.00;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	1/1:0,373:1.00:373
chr14	75365387	rs10136839	C	T	280.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:16,13:0.45:29
chr14	75367740	rs1799900	G	A	2541.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr14	75373112	.	T	TGGG	532.73	.	AC=2;AF=1.00;AN=2;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=38.05;SOR=5.421;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr14	75373210	rs74064442	G	A	1246.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:77,59:0.43:136
chr14	75373245	rs3742784	A	G	2512.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:71,108:0.60:179
chr14	75373475	rs10134885	T	C	1746.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr14	75374013	rs4899538	A	G	586.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:10,22:0.69:32
chr14	75376013	rs60635665	A	C	468.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:36,16:0.31:52
chr14	75376036	rs10131976	C	T	454.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:28,14:0.33:42
chr14	75378296	rs3081755	GTGTGTA	G	4049.73	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr14	75378331	rs759057	T	C	6312.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr14	75378347	rs3213717	C	T	3157.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:61,139:0.69:200
chr14	75412908	rs8005277	A	G	6070.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr14	75415194	rs2159907	G	C	4986.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr14	75470446	rs175041	C	A	5211.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr14	75471392	rs376012405	ATTTTTTT	A	654.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=40.92;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr14	75471399	.	T	A	100.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.464;ClippingRankSum=-0.000;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.20;ReadPosRankSum=-0.063;SOR=0.905;set=HC	GT:AD:AF:DP	0/1:9,5:0.36:14
chr14	75471401	rs200354660	T	A	736.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.34;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr14	75471403	rs371500682	T	A	826.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=48.63;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr14	75471405	rs201252172	T	A	866.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.62;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr14	75471408	rs71426992	T	A	869.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.53;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr14	75483812	rs13712	T	C	4370.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr14	75485406	rs175052	G	A	866.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr14	75485489	rs175053	A	G	4302.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr14	75497130	rs175070	C	A	2974.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr14	75505008	rs3742780	G	C	14394.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.03;QD=44.98;SOR=1.286;set=HC	GT:AD:AF:DP	1/1:0,320:1.00:320
chr14	75505016	rs175075	A	G	14986.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.03;QD=42.82;SOR=1.208;set=HC	GT:AD:AF:DP	1/1:0,350:1.00:350
chr14	75513883	rs175081	T	C	10542.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:0,360:1.00:360
chr14	75528580	rs10129657	G	A	653.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr14	75537381	rs11546525	C	T	7376.77	.	AC=1;AF=0.500;AN=2;DB;DP=533;set=Intersection	GT:AD:AF:DP	0/1:198,333:0.63:531
chr14	75538217	rs3742778	G	T	7777.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr14	75544101	rs12589815	C	T	713.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr14	75544189	rs12589876	G	A	2506.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr14	75551254	rs175487	C	T	4065.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr14	75551442	rs175486	A	C	9838.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	1/1:1,357:1.00:358
chr14	75553655	rs175485	T	C	2891.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr14	75572559	rs119077	T	C	1057.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr14	75574087	rs10146482	C	T	12994.77	.	AC=2;AF=1.00;AN=2;DB;DP=503;set=Intersection	GT:AD:AF:DP	1/1:0,499:1.00:499
chr14	75580152	rs175464	G	A	3451.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr14	75587351	rs175454	T	C	3004.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.08;SOR=1.632;set=HC	GT:AD:AF:DP	1/1:0,107:1.00:107
chr14	75590822	rs8017642	G	A	9567.77	.	AC=2;AF=1.00;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	1/1:0,361:1.00:361
chr14	75601663	rs4649	G	A	1655.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:185,89:0.32:274
chr14	75601737	rs12435391	A	G	5863.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr14	75601862	rs876402	A	G	1368.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr14	75605792	rs1047418	A	G	5349.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:2,198:0.99:200
chr14	75614504	rs3832966	A	ACCCG	3634.73	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr14	75735859	rs4903300	G	A	4414.77	.	AC=1;AF=0.500;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	0/1:150,204:0.58:354
chr14	75745551	rs2239615	T	A	1042.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:31,47:0.60:78
chr14	75745626	rs7101	C	T	4201.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:120,180:0.60:300
chr14	75746690	rs1046117	C	T	8134.77	.	AC=1;AF=0.500;AN=2;DB;DP=581;set=Intersection	GT:AD:AF:DP	0/1:199,366:0.65:565
chr14	75747407	rs3216792	AG	A	4097.73	.	AC=1;AF=0.500;AN=2;DB;DP=251;MQ=60.17;set=Intersection	GT:AD:AF:DP	0/1:98,143:0.59:241
chr14	75758770	rs3742770	G	A	1823.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:164,97:0.37:261
chr14	75758885	rs3742769	A	G	8673.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chr14	75759060	rs3742768	C	T	1508.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:209,87:0.29:296
chr14	75759172	rs11159133	T	C	1233.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:25,56:0.69:81
chr14	75760855	rs3742767	G	C	3007.77	.	AC=1;AF=0.500;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	0/1:280,162:0.37:442
chr14	75904660	rs3625	A	G	1027.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:94,56:0.37:150
chr14	75989286	rs175722	G	T	492.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:29,21:0.42:50
chr14	76129287	rs2302592	C	G	1796.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:2,59:0.97:61
chr14	76150119	rs11406886	C	CT	311.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.577;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=0.793;QD=8.43;ReadPosRankSum=-1.052;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:13,24:0.65:37
chr14	76156609	rs2303345	C	T	20528.77	.	AC=2;AF=1.00;AN=2;DB;DP=791;set=Intersection	GT:AD:AF:DP	1/1:0,785:1.00:785
chr14	76173860	rs1005224	T	A	977.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;MQ=60.34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr14	76175565	rs1981898	C	A	3336.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:2,124:0.98:126
chr14	76175594	rs1981899	G	A	2312.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr14	76175666	rs8007792	C	A	843.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr14	76198818	rs5809726	CT	C	2034.73	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:24,130:0.84:154
chr14	76201482	rs2288141	G	T	7015.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr14	76203747	rs967889	A	T	1144.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:1,38:0.97:39
chr14	76224153	rs2113577	T	A	6091.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:2,229:0.99:231
chr14	76232398	rs2359870	T	C	3159.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr14	76238254	.	ATT	A,AT	1264.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.169;ClippingRankSum=0.000;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.35;MQRankSum=0.664;QD=12.91;ReadPosRankSum=0.659;SOR=0.582;set=HC	GT:AD:AF:DP	1/2:9,26,63:0.27,0.64:98
chr14	76242089	rs1035614	A	T	1625.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr14	76287061	rs12206	T	C	5417.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.56;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,212:1.00:212
chr14	76349013	.	C	CT	30.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.333;ClippingRankSum=0.000;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.79;ReadPosRankSum=-0.457;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:31,8:0.21:39
chr14	76352929	rs1882827	C	T	2232.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr14	76368544	rs1133834	T	C	4744.77	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:132,211:0.62:343
chr14	76370545	.	CA	C	367.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.628;ClippingRankSum=0.000;DP=189;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=2.094;QD=2.42;ReadPosRankSum=0.311;SOR=0.623;set=HC	GT:AD:AF:DP	0/1:100,52:0.34:152
chr14	76432136	rs3917187	T	C	1300.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:97,58:0.37:155
chr14	76488551	rs2058941	A	G	1279.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr14	76524970	.	C	CT	96.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.087;ClippingRankSum=0.000;DP=66;ExcessHet=3.0103;FS=1.351;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.56;ReadPosRankSum=-0.592;SOR=0.967;set=HC	GT:AD:AF:DP	0/1:47,15:0.24:62
chr14	76548783	rs137916626	GGACCTT	G	541.73	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:59,18:0.23:77
chr14	76549377	rs7161722	G	A	330.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:23,16:0.41:39
chr14	76549752	rs8536	G	A	1170.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:73,61:0.46:134
chr14	76619167	rs3813547	A	C	3794.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr14	76638466	rs3783997	A	G	2215.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr14	76644623	rs2121069	G	A	6434.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr14	76662446	rs1900127	C	T	3049.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr14	76720417	rs11846524	C	G	2293.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr14	76777257	rs72729677	C	T	1094.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:35,53:0.60:88
chr14	76948262	rs11480158	C	CT	3447.73	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:75,109:0.59:184
chr14	76948862	rs10134248	T	C	2301.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:41,94:0.70:135
chr14	76957887	rs2361293	T	C	3358.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr14	76964655	rs61742642	C	T	3524.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.343;ClippingRankSum=0.000;DB;DP=255;ExcessHet=3.0103;FS=3.277;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.27;ReadPosRankSum=-0.480;SOR=0.963;set=HC	GT:AD:AF:DP	0/1:93,154:0.62:247
chr14	76966093	rs71429960	A	G	759.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:14,32:0.70:46
chr14	77229539	rs2270324	G	A	2277.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr14	77236147	rs7142166	G	A	910.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:26,35:0.57:61
chr14	77236380	rs3815550	C	T	5411.77	.	AC=1;AF=0.500;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	0/1:125,246:0.66:371
chr14	77239567	rs2075772	A	G	3148.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:87,147:0.63:234
chr14	77239738	rs61992271	C	T	171.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr14	77274227	rs57281781	G	C	387.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:8,17:0.68:25
chr14	77275630	rs34270005	C	A	4093.77	.	AC=1;AF=0.500;AN=2;DB;DP=591;set=Intersection	GT:AD:AF:DP	0/1:366,216:0.37:582
chr14	77279064	rs8008004	A	G	5994.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr14	77292992	rs926120	C	T	1255.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:182,74:0.29:256
chr14	77294950	rs2142189	C	T	3439.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:96,151:0.61:247
chr14	77295101	rs60415199	T	C	956.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:77,45:0.37:122
chr14	77295192	rs2067007	G	A	985.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:32,39:0.55:71
chr14	77305508	rs11628619	T	C	593.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:12,24:0.67:36
chr14	77305833	rs12893724	C	T	849.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:22,34:0.61:56
chr14	77311296	rs12896621	A	G	4739.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr14	77311445	rs11620630	T	C	436.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:4,16:0.80:20
chr14	77318518	rs11629409	T	G	507.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:9,20:0.69:29
chr14	77319773	rs61011979	G	GGTGTGT,GGTGTGTGTGT	1430.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.505;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=32.52;ReadPosRankSum=0.266;SOR=4.174;set=HC	GT:AD:AF:DP	1/2:6,24,14:0.55,0.32:44
chr14	77327254	rs45536531	T	G	2364.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:51,104:0.67:155
chr14	77332367	rs1882844	C	T	5014.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr14	77333630	rs141501598	T	TG	221.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.392;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.92;ReadPosRankSum=-0.770;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:18,10:0.36:28
chr14	77333834	rs61989437	G	A	321.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:26,17:0.40:43
chr14	77493415	rs199502327	T	G	3889.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:108,174:0.62:282
chr14	77493647	rs61991619	A	G	2131.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:3,84:0.97:87
chr14	77493761	.	TTGCTGCTGC	T,TTGC	3576.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=157;set=Intersection	GT:AF:DP	1/2:0.09,0.88:99
chr14	77493785	.	CTGCTGCTGT	C	1033	.	AC=1;AF=0.500;AN=2;FR=0.5000;HP=1;HapScore=1;MMLQ=27;NF=22;NR=45;PP=1033;QD=15.5074626866;SC=GCTGCTGCTGCTGCTGCTGTT;SbPval=0.8;Source=Platypus;TC=84;TCF=33;TCR=51;TR=67;WE=77493801;WS=77493775;set=Platypus	GT:AD:AF:DP	1/0:17,67:0.80:84
chr14	77600344	rs7141511	G	T	609.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:43,29:0.40:72
chr14	77685357	rs6574361	G	A	721.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:15,26:0.63:41
chr14	77686303	rs2287377	A	C	2706.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr14	77697810	rs11295791	TA	T	198.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.543;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.52;ReadPosRankSum=0.107;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:15,21:0.58:36
chr14	77697967	rs375566	A	G	9384.77	.	AC=2;AF=1.00;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	1/1:0,357:1.00:357
chr14	77703057	rs403291	A	G	2684.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:88,126:0.59:214
chr14	77704974	rs8010477	G	C	10333.77	.	AC=2;AF=1.00;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	1/1:0,380:1.00:380
chr14	77708804	rs61731611	C	T	1480.77	.	AC=1;AF=0.500;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	0/1:242,96:0.28:338
chr14	77709120	rs2287380	A	G	2532.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr14	77709450	rs409109	T	G	2129.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:43,83:0.66:126
chr14	77733117	rs28909968	CT	C	1485.73	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:49,77:0.61:126
chr14	77737088	rs4903565	G	A	2104.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:151,111:0.42:262
chr14	77743644	rs1055592	G	A	816.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:19,31:0.62:50
chr14	77745193	rs3209079	A	C	9312.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	1/1:0,333:1.00:333
chr14	77745376	rs61990291	G	A	4329.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr14	77751925	rs2270419	C	T	8769.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr14	77766025	rs2287389	G	A	2878.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.62;SOR=2.035;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr14	77766025	.	GGA	AGG	2347	.	AC=2;AF=1.00;AN=2;BRF=0.44;FR=1.0000;HP=1;HapScore=1;MGOF=5;MMLQ=28;MQ=60.0;NF=12;NR=39;PP=2347;QD=47.0679975463;SC=ATGGCCAAGAGGAGAGAGAAG;SbPval=0.56;Source=Platypus;TC=54;TCF=13;TCR=41;TR=51;WE=77766035;WS=77766015;set=Platypus	GT:AD:AF:DP	1/1:3,51:0.94:54
chr14	77766027	rs2287390	A	G	2878.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.69;SOR=2.056;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr14	77767382	rs2287392	A	G	3687.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr14	77775153	.	A	AT	374.73	.	AC=1;AF=0.500;AN=2;DP=39;set=Intersection	GT:AD:AF:DP	0/1:13,20:0.61:33
chr14	77794192	rs2287396	C	T	6610.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:1,240:1.00:241
chr14	77794283	rs1046428	T	C	11395.77	.	AC=2;AF=1.00;AN=2;DB;DP=444;set=Intersection	GT:AD:AF:DP	1/1:2,438:1.00:440
chr14	77795311	rs5809824	CT	C	3270.73	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr14	77809939	rs3815628	C	T	3489.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr14	77843353	rs10141317	G	T	1428.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:35,67:0.66:102
chr14	77843384	rs3742737	G	T	1824.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:40,84:0.68:124
chr14	77843814	rs11844594	T	C	2211.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:66,99:0.60:165
chr14	77844869	rs4903576	A	G	4856.77	.	AC=1;AF=0.500;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	0/1:144,226:0.61:370
chr14	77845121	rs2193595	A	G	3331.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:68,148:0.69:216
chr14	77857672	rs34048381	C	CT	299.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.889;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=2.122;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=0.957;QD=5.99;ReadPosRankSum=2.065;SOR=0.267;set=HC	GT:AD:AF:DP	0/1:27,23:0.46:50
chr14	77872509	rs13379432	T	G	977.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:28,42:0.60:70
chr14	77872933	rs139730228	TACACACACACAC	T,TACACACACAC	779.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.686;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=31.19;ReadPosRankSum=-1.064;SOR=1.358;set=HC	GT:AD:AF:DP	1/2:1,15,9:0.60,0.36:25
chr14	77872977	rs80329306	C	G	609.73	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:27,27:0.50:54
chr14	77880493	rs8005759	C	T	444.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.747;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=6.657;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.670;QD=3.62;ReadPosRankSum=1.319;SOR=0.404;set=HC	GT:AD:AF:DP	0/1:90,33:0.27:123
chr14	77880524	rs10592368	CTT	C	691.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.051;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=1.585;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=0.745;QD=16.47;ReadPosRankSum=0.967;SOR=1.140;set=HC	GT:AD:AF:DP	1/1:9,33:0.79:42
chr14	77880593	rs11159258	T	C	59.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:18,6:0.25:24
chr14	77889040	rs8017215	T	C	3989.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:92,177:0.66:269
chr14	77900490	rs67370165	T	G	2470.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:79,102:0.56:181
chr14	77901758	rs113558496	G	GA	405.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.614;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=0.676;QD=11.27;ReadPosRankSum=1.578;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:7,29:0.81:36
chr14	77902418	rs2063997	A	G	1474.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:59,67:0.53:126
chr14	77914752	rs2091916	A	G	1182.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:174,71:0.29:245
chr14	77919587	rs2364158	T	C	11408.77	.	AC=2;AF=1.00;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	1/1:0,406:1.00:406
chr14	77926011	rs1061629	C	T	2064.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:139,102:0.42:241
chr14	77928476	rs12436593	C	T	1346.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:105,73:0.41:178
chr14	77928525	rs1061638	A	G	6960.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr14	77928735	rs11159262	A	G	263.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:22,13:0.37:35
chr14	77930752	rs11624314	G	A	528.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:33,24:0.42:57
chr14	77932017	rs7146595	A	C	1605.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:133,81:0.38:214
chr14	77932111	rs7146784	A	G	266.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:28,12:0.30:40
chr14	77934758	rs4903584	A	G	475.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:50,27:0.35:77
chr14	77934905	rs11419661	A	AT	277.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.647;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=4.821;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.17;ReadPosRankSum=0.312;SOR=0.243;set=HC	GT:AD:AF:DP	0/1:19,26:0.58:45
chr14	77935239	rs5809831	T	TG	561.73	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:37,22:0.37:59
chr14	77935520	rs7250	G	A	2768.77	.	AC=1;AF=0.500;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	0/1:250,150:0.38:400
chr14	77948566	rs8010861	A	G	1067.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:30,40:0.57:70
chr14	77950585	rs73316987	A	G	1527.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:49,63:0.56:112
chr14	77951124	rs3742728	C	T	1401.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:184,83:0.31:267
chr14	77951143	rs77534020	T	C	3090.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:64,138:0.68:202
chr14	77978621	rs73319080	A	C	890.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:30,37:0.55:67
chr14	77984573	rs926114	C	T	3216.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr14	77987958	rs2072672	C	A	2779.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr14	78002223	rs28628767	G	A	6309.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:2,226:0.99:228
chr14	78018614	rs2178876	C	T	2447.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr14	78021952	rs79502009	G	A	847.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr14	78028803	rs2364602	A	G	7130.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr14	78036899	rs11344772	AG	A	4099.73	.	AC=1;AF=0.500;AN=2;DB;DP=247;MQ=60.09;set=Intersection	GT:AD:AF:DP	0/1:96,148:0.61:244
chr14	78036935	rs4903606	A	G	1782.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:55,74:0.57:129
chr14	78063440	rs12435993	A	C	429.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:29,18:0.38:47
chr14	78063823	rs34670650	AT	A	177.73	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:22,11:0.33:33
chr14	78170896	rs8021036	C	G	1935.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:53,86:0.62:139
chr14	78174473	rs11159286	A	C	1754.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:41,82:0.67:123
chr14	78183706	rs176959	C	T	1831.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr14	78184566	rs176960	C	A	8546.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr14	78187316	rs176965	A	C	553.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr14	78188878	rs176967	T	C	1137.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:106,62:0.37:168
chr14	78197365	rs114763	C	T	5645.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr14	78198786	rs17752628	T	C	1602.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:41,68:0.62:109
chr14	78198996	rs45553938	G	A	1374.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:105,72:0.41:177
chr14	78200392	rs10134425	G	T	2992.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr14	78201079	rs5809849	CA	C	253.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.67;QD=21.14;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr14	78204986	rs11851588	G	A	468.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:11,18:0.62:29
chr14	78226850	rs1477264	G	A	556.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:48,28:0.37:76
chr14	78285461	rs3214433	GT	G	875.73	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:112,53:0.32:165
chr14	78288709	rs9323652	A	G	2439.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:90,119:0.57:209
chr14	78325675	rs28498552	C	T	656.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:51,31:0.38:82
chr14	78366967	rs734654	A	G	5085.77	.	AC=1;AF=0.500;AN=2;DB;DP=807;set=Intersection	GT:AD:AF:DP	0/1:519,279:0.35:798
chr14	78374292	rs17106595	C	T	5912.77	.	AC=1;AF=0.500;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	0/1:177,276:0.61:453
chr14	78390631	rs150422608	TAAACTC	T	199.73	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:5,6:0.55:11
chr14	78390677	rs17753382	C	T	314.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:14,14:0.50:28
chr14	78392008	rs11850022	C	T	1464.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:18,58:0.76:76
chr14	78392012	rs28545798	A	T	256.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.883;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.17;ReadPosRankSum=0.706;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:63,18:0.22:81
chr14	78709814	rs1882821	T	C	10634.77	.	AC=2;AF=1.00;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	1/1:3,402:0.99:405
chr14	78744823	rs10134857	G	A	1503.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr14	78748366	rs10147289	C	T	4297.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr14	78766814	rs4903742	A	G	771.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr14	78993170	rs12882387	A	C	2431.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:56,108:0.66:164
chr14	79176021	rs71414707	A	T	1443.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:45,64:0.59:109
chr14	79176133	rs12147248	G	T	367.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr14	79181046	rs1465481	A	T	6980.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr14	79276720	rs33967572	T	TA	260.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.636;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=2.635;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.66;ReadPosRankSum=1.204;SOR=0.382;set=HC	GT:AD:AF:DP	0/1:30,26:0.46:56
chr14	79276732	.	AC	A	340	.	AC=2;AF=1.00;AN=2;BRF=0.46;FR=1.0000;HP=11;HapScore=4;MGOF=23;MMLQ=28;MQ=59.42;NF=1;NR=27;PP=340;QD=12.3571428571;SC=AAAAAAAAAAACAAAACTGAC;SbPval=0.4;Source=Platypus;TC=55;TCF=1;TCR=54;TR=28;WE=79276741;WS=79276709;set=Platypus	GT:AD:AF:DP	1/1:27,28:0.51:55
chr14	79276733	rs4133797	C	A	2110.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.18;SOR=1.355;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr14	79433527	.	G	GT	187.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.589;ClippingRankSum=0.000;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.50;ReadPosRankSum=2.022;SOR=0.632;set=HC	GT:AD:AF:DP	0/1:97,28:0.22:125
chr14	80290425	rs932265	A	G	1030.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr14	80669580	rs225014	T	C	3093.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.317;ClippingRankSum=0.000;DB;DP=234;ExcessHet=3.0103;FS=2.280;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.410;QD=13.28;ReadPosRankSum=-0.650;SOR=0.536;set=HC	GT:AD:AF:DP	0/1:92,141:0.61:233
chr14	80993330	rs34838656	G	GA	999.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.102;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.53;MQRankSum=0.691;QD=14.92;ReadPosRankSum=-1.472;SOR=0.558;set=HC	GT:AD:AF:DP	1/1:10,57:0.85:67
chr14	80993774	rs11159467	A	T	356.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.44;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr14	81025522	rs1530771	C	A	2322.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:64,106:0.62:170
chr14	81259078	rs4523859	G	A	4624.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:1,164:0.99:165
chr14	81297385	rs7156572	G	A	2036.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr14	81307218	rs7142753	T	G	590.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr14	81574687	rs3837640	T	TTCTC	1292.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=44.58;SOR=1.302;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr14	81574845	.	T	TTTTTTTCTTTTTAC,TTTTTTTTCTTTTTAC	5695.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=63.30;QD=56.39;SOR=0.965;set=HC	GT:AD:AF:DP	1/2:0,78,23:0.77,0.23:101
chr14	81574959	rs3783942	A	G	8672.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr14	81575005	rs3783941	C	A	5790.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr14	81610583	rs1991517	G	C	10661.77	.	AC=2;AF=1.00;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	1/1:1,384:1.00:385
chr14	81667852	rs8019633	A	T	1595.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr14	81670558	rs8006015	A	G	1046.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:17,47:0.73:64
chr14	81676360	rs201118427	C	CT	1109.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.185;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=11.906;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=0.000;QD=11.32;ReadPosRankSum=0.830;SOR=2.247;set=HC	GT:AD:AF:DP	0/1:66,32:0.33:98
chr14	81676361	.	A	AC	1110.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.012;ClippingRankSum=0.000;DP=121;ExcessHet=3.0103;FS=11.906;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.33;ReadPosRankSum=0.769;SOR=2.247;set=HC	GT:AD:AF:DP	0/1:66,32:0.33:98
chr14	81676362	rs199721074	G	T	1119.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.818;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=11.906;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.43;ReadPosRankSum=0.667;SOR=2.247;set=HC	GT:AD:AF:DP	0/1:66,32:0.33:98
chr14	81676370	rs368782223	CTTTATCATACA	C	1102.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.092;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=7.849;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.25;ReadPosRankSum=0.746;SOR=1.845;set=HC	GT:AD:AF:DP	0/1:66,32:0.33:98
chr14	81676382	rs372189020	GAATGGTCCCACAAGAAATAT	G	1134.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.109;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=6.333;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.35;ReadPosRankSum=1.229;SOR=1.683;set=HC	GT:AD:AF:DP	0/1:53,32:0.38:85
chr14	81686922	.	C	CA	636.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.028;ClippingRankSum=0.000;DP=201;ExcessHet=3.0103;FS=1.391;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=-0.718;QD=3.88;ReadPosRankSum=0.821;SOR=0.542;set=HC	GT:AD:AF:DP	0/1:109,55:0.34:164
chr14	81686938	rs145594822	A	AT	1916.73	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:86,62:0.42:148
chr14	81686978	rs113271579	GA	G	652.73	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:32,36:0.53:68
chr14	81712638	rs59453808	T	G	329.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:20,14:0.41:34
chr14	81728288	rs11459332	T	TA	341.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.166;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.26;ReadPosRankSum=-0.708;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:28,37:0.57:65
chr14	81737076	rs2241621	A	C	1157.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:92,63:0.41:155
chr14	81744736	rs3813535	A	G	6465.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr14	81745152	rs12887344	G	A	167.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chr14	83159052	rs71418905	C	T	1676.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr14	85995608	rs12590399	T	G	2799.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.07;SOR=1.999;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr14	85995614	rs12587861	G	A	2664.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.17;SOR=2.041;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr14	86088056	rs10141266	T	C	7997.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr14	88400353	rs412915	C	T	2375.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:71,108:0.60:179
chr14	88400367	rs45572135	T	G	1437.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:96,71:0.43:167
chr14	88400449	rs413750	T	C	1683.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.68;SOR=3.442;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr14	88400449	.	TG	CA,CG	545	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.23;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=34;MMLQ=28;MQ=60.0;NF=2,6;NR=13,37;PP=215,545;QD=17.8978583241;SC=TATCTATTACTGCAGAAATAG;SbPval=0.62;Source=Platypus;TC=44;TCF=6;TCR=38;TR=15,43;WE=88400458;WS=88400439;set=Platypus	GT:AF:DP	0/1:0.34:44
chr14	88400450	rs432946	G	A	476.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.465;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=1.911;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.14;ReadPosRankSum=-0.161;SOR=0.281;set=HC	GT:AD:AF:DP	0/1:26,21:0.45:47
chr14	88400486	rs1042029	A	G	442.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:12,18:0.60:30
chr14	88401213	rs421262	T	C	6147.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr14	88406120	rs45626938	C	T	1457.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.697;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=4.553;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.56;ReadPosRankSum=0.411;SOR=0.341;set=HC	GT:AD:AF:DP	0/1:45,38:0.46:83
chr14	88406127	rs45567441	G	C	1526.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.237;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=2.921;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.24;ReadPosRankSum=0.196;SOR=0.410;set=HC	GT:AD:AF:DP	0/1:51,43:0.46:94
chr14	88406404	rs417276	T	C	1062.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr14	88407716	rs34752717	T	TA	373.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.327;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=1.732;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.434;QD=3.09;ReadPosRankSum=1.382;SOR=0.517;set=HC	GT:AD:AF:DP	0/1:85,36:0.30:121
chr14	88407734	rs448805	G	C	5560.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr14	88407875	rs421466	T	A	7117.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr14	88407888	rs398607	A	G	3319.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:76,150:0.66:226
chr14	88407917	rs12432149	G	A	1078.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:92,54:0.37:146
chr14	88411803	rs444902	T	C	1011.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr14	88411837	rs366615	G	A	838.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:29,38:0.57:67
chr14	88411947	rs367327	T	C	4402.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr14	88414211	rs398076	G	A	1666.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:71,82:0.54:153
chr14	88414283	rs398343	G	A	2846.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr14	88416390	rs440426	A	G	1377.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr14	88416441	rs451073	C	T	617.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr14	88417095	rs11300320	GA	G	1038.73	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:11,63:0.85:74
chr14	88417161	rs431748	C	T	1550.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr14	88417244	rs443019	C	T	407.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr14	88429690	rs17687109	A	G	1278.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:110,68:0.38:178
chr14	88431704	rs17760463	T	C	219.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:16,10:0.38:26
chr14	88434893	rs17687364	G	A	1328.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:90,62:0.41:152
chr14	88442582	rs76114917	G	A	981.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:52,45:0.46:97
chr14	88442646	rs76521220	A	G	1717.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:164,95:0.37:259
chr14	88442712	rs34362748	C	T	3218.77	.	AC=1;AF=0.500;AN=2;DB;DP=524;set=Intersection	GT:AD:AF:DP	0/1:345,174:0.34:519
chr14	88448486	.	A	T	22	.	AC=1;AF=0.500;AN=2;BRF=0.47;FR=0.5000;HP=2;HapScore=2;MGOF=7;MMLQ=28;MQ=60.0;NF=4;NR=0;PP=22;QD=14.1928031368;SC=TTTCTGTGTTAGGAACCATAA;SbPval=1.0;Source=Platypus;TC=23;TCF=19;TCR=4;TR=4;WE=88448494;WS=88448476;set=Platypus	GT:AD:AF:DP	0/1:19,4:0.17:23
chr14	88448525	rs45568734	A	G	134.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.437;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.28;ReadPosRankSum=-0.825;SOR=0.649;set=HC	GT:AD:AF:DP	0/1:47,12:0.20:59
chr14	88448643	rs79515863	C	T	400.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.883;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=0.802;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.64;ReadPosRankSum=0.501;SOR=0.594;set=HC	GT:AD:AF:DP	0/1:81,29:0.26:110
chr14	88448695	rs17797993	C	A	225.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.026;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=4.369;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.96;ReadPosRankSum=1.196;SOR=0.252;set=HC	GT:AD:AF:DP	0/1:41,16:0.28:57
chr14	88450639	rs17798011	G	A	196.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:24,12:0.33:36
chr14	88450928	rs77468347	C	T	757.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:57,37:0.39:94
chr14	88452981	rs77466023	C	T	866.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:95,49:0.34:144
chr14	88453424	rs2119703	G	A	878.73	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:102,58:0.36:160
chr14	88454469	rs74337989	A	T	2346.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:202,124:0.38:326
chr14	88454910	rs2289511	G	A	370.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:23,20:0.47:43
chr14	88454937	rs74689143	C	T	257.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:22,14:0.39:36
chr14	88458573	rs78557856	A	G	1292.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:120,69:0.37:189
chr14	88458745	rs78187751	C	T	931.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:101,52:0.34:153
chr14	88459280	rs143228205	C	A	195.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:17,10:0.37:27
chr14	88459434	rs111976362	G	T	1668.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:166,94:0.36:260
chr14	88459448	rs111887056	C	G	1713.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:176,98:0.36:274
chr14	88459467	rs112992946	C	G	1989.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:184,108:0.37:292
chr14	88459575	.	A	C	1085.77	.	AC=1;AF=0.500;AN=2;DP=197;set=Intersection	GT:AD:AF:DP	0/1:130,64:0.33:194
chr14	88459656	rs76999174	A	G	1331.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:132,66:0.33:198
chr14	88477413	rs6574978	C	T	3627.77	.	AC=1;AF=0.500;AN=2;DB;DP=558;set=Intersection	GT:AD:AF:DP	0/1:359,191:0.35:550
chr14	88651826	rs144490234	A	AAC	4404.73	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:46,188:0.80:234
chr14	88651962	rs17762463	C	T	2517.77	.	AC=1;AF=0.500;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	0/1:236,131:0.36:367
chr14	88652389	rs3742692	C	T	2844.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:73,124:0.63:197
chr14	88654235	rs424752	A	G	376.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:16,19:0.54:35
chr14	88658764	rs12898054	G	C	1307.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:139,72:0.34:211
chr14	88729931	rs761971	G	T	791.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:35,36:0.51:71
chr14	88737193	rs1298237	T	C	4125.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:125,180:0.59:305
chr14	88792816	rs3742690	T	G	2941.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr14	88852031	rs709886	A	G	518.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr14	88852279	rs5810413	TG	T	1537.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr14	88862529	rs3179969	G	A	1122.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr14	88894210	rs2295135	T	G	827.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:2,32:0.94:34
chr14	88895669	rs386579	T	G	3545.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.83;SOR=1.648;set=HC	GT:AD:AF:DP	1/1:0,123:1.00:123
chr14	88895941	rs61975260	C	G	1460.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr14	88934651	rs366476	G	A	441.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr14	88935925	rs2297129	A	G	8581.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,328:1.00:328
chr14	88936254	rs2297128	A	G	19099.77	.	AC=2;AF=1.00;AN=2;DB;DP=706;set=Intersection	GT:AD:AF:DP	1/1:3,690:1.00:693
chr14	88938652	rs2274736	A	G	7086.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:2,263:0.99:265
chr14	88945591	rs879932	A	G	5296.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr14	88946622	rs2401751	G	A	7151.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr14	88967280	rs45446997	T	C	5478.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr14	88970925	rs1998670	C	T	12137.77	.	AC=2;AF=1.00;AN=2;DB;DP=469;set=Intersection	GT:AD:AF:DP	1/1:1,452:1.00:453
chr14	88971758	rs2274735	T	G	1448.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr14	88974131	rs34965888	GAT	G	367.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr14	88974417	rs10143744	T	C	725.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr14	88983670	rs10150986	G	A	3778.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr14	89037482	rs10682918	C	CAT	3368.73	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr14	89042180	rs1469602	T	G	2166.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr14	89063167	rs2297124	A	G	15610.77	.	AC=2;AF=1.00;AN=2;DB;DP=616;set=Intersection	GT:AD:AF:DP	1/1:3,596:0.99:599
chr14	89082396	rs61173654	A	AT	2677.73	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr14	89088266	rs4635267	C	T	11229.77	.	AC=2;AF=1.00;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	1/1:4,421:0.99:425
chr14	89088357	rs56144430	G	A	13514.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.963;ClippingRankSum=0.000;DB;DP=568;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.98;MQRankSum=0.000;QD=24.26;ReadPosRankSum=-0.120;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:3,554:0.99:557
chr14	89088388	rs2983488	G	C	10146.77	.	AC=2;AF=1.00;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	1/1:1,410:1.00:411
chr14	89089149	rs11382327	C	CT	1303.73	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:9,70:0.89:79
chr14	89094243	rs1144916	G	C	2564.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr14	89105287	rs1152383	T	A	714.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr14	89148486	rs17260380	C	T	929.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr14	89151392	rs17204164	C	A	1014.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:48,51:0.52:99
chr14	89205265	rs17188228	T	C	3309.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr14	89258877	rs61982739	G	A	970.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr14	89307320	rs17700296	T	C	9334.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:0,344:1.00:344
chr14	89341293	.	C	CA	64.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.357;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=1.316;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.01;ReadPosRankSum=-0.568;SOR=0.454;set=HC	GT:AD:AF:DP	0/1:52,12:0.19:64
chr14	89591829	rs17777553	G	T	3381.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr14	89647259	rs140257053	G	GGCAGAGAACATGCATGGA	4269.73	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr14	89647297	.	TA	CA	823	.	AC=1;AF=0.500;AN=2;BRF=0.44;FR=0.5000,1.0000;HP=2;HapScore=2;MGOF=275;MMLQ=24;MQ=59.91;NF=0,1;NR=4,31;PP=159,823;QD=48.4428031368;SC=CACGTGCACATACACACACAC;SbPval=1.0;Source=Platypus;TC=38;TCF=4;TCR=34;TR=4,32;WE=89647305;WS=89647285;set=Platypus	GT:AD:AF:DP	0/1:34,4:0.11:38
chr14	89647297	rs34338248	TA	TACA	743.73	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AF:DP	0/1:0.77:31
chr14	89747473	rs7147341	T	C	4343.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr14	89867978	rs12147030	T	C	17978.77	.	AC=2;AF=1.00;AN=2;DB;DP=689;set=Intersection	GT:AD:AF:DP	1/1:0,677:1.00:677
chr14	89868077	.	G	A	4506.77	.	AC=1;AF=0.500;AN=2;DP=358;set=Intersection	GT:AD:AF:DP	0/1:147,208:0.59:355
chr14	89878232	.	T	TA	89.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.324;ClippingRankSum=0.000;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.45;ReadPosRankSum=0.769;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:17,9:0.35:26
chr14	89878926	rs3825664	C	A	589.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:12,22:0.65:34
chr14	89884022	rs7422	A	C	680.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:77,36:0.32:113
chr14	89885466	rs10136170	T	C	3267.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:108,145:0.57:253
chr14	90263525	rs1555616	C	A	2564.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:74,109:0.60:183
chr14	90303065	rs8021113	T	C	3213.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.48;SOR=2.115;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr14	90303113	rs8019848	A	T	1403.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr14	90303383	rs8020323	A	G	1705.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr14	90303435	rs12437204	T	A	3035.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.37;SOR=0.811;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr14	90303445	rs12437206	T	C	2879.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.63;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr14	90451303	rs1296406	A	G	485.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr14	90456188	rs2401863	G	T	973.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:36,45:0.56:81
chr14	90528967	rs12878088	C	A	1493.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:31,65:0.68:96
chr14	90651357	rs12147332	G	A	617.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:52,34:0.40:86
chr14	90722824	rs2277516	G	C	676.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:20,26:0.57:46
chr14	90723000	rs2277515	A	G	1466.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:64,69:0.52:133
chr14	90723059	rs2277514	T	C	818.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:33,36:0.52:69
chr14	90723109	rs6575119	T	G	967.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr14	90723152	rs3825662	A	G	277.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chr14	90726676	rs11844225	G	A	2633.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:55,115:0.68:170
chr14	90729931	rs8022531	T	C	659.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:11,25:0.69:36
chr14	90729984	rs8015510	C	T	438.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:13,16:0.55:29
chr14	90730071	rs4811	C	T	1165.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:35,47:0.57:82
chr14	90730265	rs2282030	G	A	1227.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:38,55:0.59:93
chr14	90734826	rs11624246	A	G	1260.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:77,61:0.44:138
chr14	90736770	rs188528911	G	C	1237.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:51,60:0.54:111
chr14	90740324	rs34512486	ATCT	A	8586.73	.	AC=1;AF=0.500;AN=2;DB;DP=656;MQ=60.02;set=Intersection	GT:AD:AF:DP	0/1:373,233:0.38:606
chr14	90740588	rs10140761	G	C	769.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:148,44:0.23:192
chr14	90744672	rs10184	G	A	1979.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:177,106:0.37:283
chr14	90745422	rs3737035	T	C	2618.77	.	AC=1;AF=0.500;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	0/1:195,133:0.41:328
chr14	90752908	rs7160304	G	T	479.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:16,19:0.54:35
chr14	90754538	rs17799226	C	T	1672.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:47,71:0.60:118
chr14	90756503	rs3742672	G	A	147.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:13,8:0.38:21
chr14	90767607	rs3825661	C	T	1811.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:159,96:0.38:255
chr14	90767746	rs3742669	C	A	1172.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:93,61:0.40:154
chr14	90767759	rs3742668	G	A	911.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:84,48:0.36:132
chr14	90767856	rs3742667	T	C	525.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:31,25:0.45:56
chr14	90769539	rs2149647	C	T	2154.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:201,113:0.36:314
chr14	90770210	rs4904670	C	G	962.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr14	90863489	rs12886342	G	A	1147.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:126,58:0.32:184
chr14	90865283	rs2300497	T	C	525.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:28,23:0.45:51
chr14	90865462	rs2300498	C	G	789.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.067;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.54;ReadPosRankSum=1.740;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:125,49:0.28:174
chr14	90866346	rs2268433	C	T	743.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:46,37:0.45:83
chr14	91007618	rs1294572	T	C	1410.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr14	91007944	rs145392805	CAG	C	242.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.390;ClippingRankSum=0.000;DB;DP=426;ExcessHet=3.0103;FS=7.964;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.66;ReadPosRankSum=0.634;SOR=1.334;set=HC	GT:AD:AF:DP	0/1:331,38:0.10:369
chr14	91068663	rs61987022	G	A	882.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:20,36:0.64:56
chr14	91071898	rs75461778	G	A	287.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:8,13:0.62:21
chr14	91071925	rs78244935	G	A	533.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:12,25:0.68:37
chr14	91110601	.	G	GCACA	187.73	.	AC=1;AF=0.500;AN=2;DP=43;set=Intersection	GT:AD:AF:DP	0/1:17,7:0.29:24
chr14	91113537	rs1286422	A	G	528.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:17,24:0.59:41
chr14	91123575	rs3742660	T	C	10936.77	.	AC=2;AF=1.00;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	1/1:0,420:1.00:420
chr14	91142779	rs1077697	C	T	563.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:56,30:0.35:86
chr14	91144341	rs35336897	AG	A	585.73	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:11,21:0.66:32
chr14	91156151	rs942738	G	A	1951.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr14	91161862	rs10146731	C	T	9487.77	.	AC=2;AF=1.00;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	1/1:2,363:0.99:365
chr14	91162063	rs12893100	C	T	369.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:17,15:0.47:32
chr14	91165572	rs1749699	G	A	13419.77	.	AC=2;AF=1.00;AN=2;DB;DP=512;set=Intersection	GT:AD:AF:DP	1/1:0,503:1.00:503
chr14	91165606	rs1742100	G	A	10249.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	1/1:0,378:1.00:378
chr14	91360733	rs77438853	G	GT	2581.73	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:202,95:0.32:297
chr14	91365646	rs61587732	GAA	G,GAAA	3617.73	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;BaseQRankSum=0.887;ClippingRankSum=0.000;DB;DP=258;ExcessHet=3.0103;FS=0.725;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.04;MQRankSum=0.562;QD=15.39;ReadPosRankSum=1.603;SOR=0.794;set=HC	GT:AD:AF:DP	1/2:45,113,77:0.48,0.33:235
chr14	91365649	rs117599685	A	G	378.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.314;ClippingRankSum=0.000;DB;DP=250;ExcessHet=3.0103;FS=1.843;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=-0.568;QD=1.58;ReadPosRankSum=-0.133;SOR=0.853;set=HC	GT:AD:AF:DP	0/1:180,60:0.25:240
chr14	91389737	rs76800977	C	T	475.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:23,25:0.52:48
chr14	91409615	rs111743702	A	AT	411.94	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.612;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.58;MQRankSum=0.723;QD=14.20;ReadPosRankSum=-0.145;SOR=0.399;set=HC	GT:AD:AF:DP	1/1:5,24:0.83:29
chr14	91467567	rs1286147	A	C	1369.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:98,71:0.42:169
chr14	91518809	rs147133961	TA	T	80.92	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.046;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.74;ReadPosRankSum=-0.794;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:3,9:0.75:12
chr14	91592748	rs57615276	C	CTTCTT	3093.73	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr14	91626761	.	TAA	T	417.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.732;ClippingRankSum=0.000;DP=102;ExcessHet=3.0103;FS=1.882;MLEAC=1;MLEAF=0.500;MQ=60.42;MQRankSum=0.000;QD=9.28;ReadPosRankSum=0.234;SOR=0.438;set=HC	GT:AD:AF:DP	0/1:22,23:0.51:45
chr14	91636464	.	C	T	526.77	.	AC=1;AF=0.500;AN=2;DP=97;set=Intersection	GT:AD:AF:DP	0/1:66,30:0.31:96
chr14	91639611	rs11340262	AT	A	293.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.909;ClippingRankSum=0.000;DB;DP=306;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.97;ReadPosRankSum=0.895;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:227,75:0.25:302
chr14	91642234	rs2295528	A	G	2953.77	.	AC=1;AF=0.500;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	0/1:243,157:0.39:400
chr14	91681623	rs11622036	C	T	307.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:26,16:0.38:42
chr14	91681921	rs45465092	G	A	3568.77	.	AC=1;AF=0.500;AN=2;DB;DP=466;set=Intersection	GT:AD:AF:DP	0/1:279,183:0.40:462
chr14	91690000	.	C	CT	132.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.471;ClippingRankSum=0.000;DP=248;ExcessHet=3.0103;FS=0.706;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.57;ReadPosRankSum=-1.018;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:192,42:0.18:234
chr14	91690287	rs75775892	A	G	229.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:23,11:0.32:34
chr14	91710562	rs71656519	GAC	G	470.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.221;ClippingRankSum=-0.000;DB;DP=31;ExcessHet=3.0103;FS=6.532;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=0.140;QD=36.21;ReadPosRankSum=1.221;SOR=2.788;set=HC	GT:AD:AF:DP	1/1:1,12:0.92:13
chr14	91717214	rs11852149	C	T	3764.77	.	AC=1;AF=0.500;AN=2;DB;DP=475;set=Intersection	GT:AD:AF:DP	0/1:284,191:0.40:475
chr14	91739081	rs941920	A	G	3678.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr14	91744233	rs17796691	G	C	589.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:89,35:0.28:124
chr14	91751788	rs11341843	TC	T	11972.73	.	AC=2;AF=1.00;AN=2;DB;DP=384;MQ=60.06;set=Intersection	GT:AD:AF:DP	1/1:4,373:0.99:377
chr14	91763637	rs3742656	C	T	2106.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:32,90:0.74:122
chr14	91763971	rs5810533	CT	C	334.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.026;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=0.934;QD=7.44;ReadPosRankSum=-1.578;SOR=0.954;set=HC	GT:AD:AF:DP	0/1:18,27:0.60:45
chr14	91773494	rs1970911	G	A	2274.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:137,116:0.46:253
chr14	91773568	rs1970912	T	C	1815.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:60,79:0.57:139
chr14	91776434	rs2277507	G	A	1130.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:8,47:0.85:55
chr14	91806204	rs12883434	C	A	752.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:22,32:0.59:54
chr14	91874956	rs2295882	T	C	2830.77	.	AC=1;AF=0.500;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	0/1:227,143:0.39:370
chr14	91883129	rs45437097	G	A	2928.77	.	AC=1;AF=0.500;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	0/1:246,161:0.40:407
chr14	91883267	rs1285844	A	C	2089.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:1,65:0.98:66
chr14	91883499	rs1742546	G	A	4194.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:64,193:0.75:257
chr14	91884116	rs3742653	C	A	1706.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:34,72:0.68:106
chr14	91928933	rs4904784	T	C	595.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr14	91942342	rs10145724	T	A	3136.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr14	91942407	rs10145809	T	G	1251.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr14	91943454	rs66932962	C	CT	37.37	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.876;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.19;MQRankSum=0.366;QD=5.34;ReadPosRankSum=0.180;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:2,5:0.71:7
chr14	91948643	rs6575195	G	A	2122.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr14	91957236	rs10131200	T	A	273.78	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.42;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr14	92041075	rs1704614	C	G	305.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:19,13:0.41:32
chr14	92053362	rs61991980	C	T	2769.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:57,103:0.64:160
chr14	92053395	rs2295789	G	C	1760.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:175,97:0.36:272
chr14	92058445	rs1285637	G	A	1457.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:80,65:0.45:145
chr14	92074545	rs1743159	T	A	118.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:20,8:0.29:28
chr14	92084004	rs1620238	C	G	974.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:92,52:0.36:144
chr14	92088016	rs1296082	G	A	1561.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:127,74:0.37:201
chr14	92091243	.	C	T	627.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.203;ClippingRankSum=0.000;DP=91;ExcessHet=3.0103;FS=0.819;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.98;ReadPosRankSum=0.344;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:56,34:0.38:90
chr14	92102759	rs17127484	A	G	3355.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:1,131:0.99:132
chr14	92103033	rs140647574	AC	A	780.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr14	92126456	rs200431786	TCTCTCACA	TCA,T	734.73	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=58;set=Intersection	GT:AF:DP	0/1:0.75:44
chr14	92140428	rs1285655	G	A	1215.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr14	92159697	rs183059485	C	T	2090.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:46,92:0.67:138
chr14	92174343	rs4605095	C	T	1000.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr14	92189548	rs35078318	G	GA,GAA	789.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.043;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.66;MQRankSum=0.616;QD=18.37;ReadPosRankSum=0.063;SOR=1.096;set=HC	GT:AD:AF:DP	1/2:4,25,14:0.58,0.33:43
chr14	92264080	rs71120197	TA	T	1256.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.980;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=4.005;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.13;ReadPosRankSum=-1.197;SOR=1.129;set=HC	GT:AD:AF:DP	0/1:33,91:0.73:124
chr14	92268615	rs2402073	T	G	5721.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr14	92280037	rs10134181	T	C	3631.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:1,134:0.99:135
chr14	92343764	rs2430341	C	T	6349.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr14	92344244	rs2430342	T	C	10982.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.692;ClippingRankSum=0.000;DB;DP=484;ExcessHet=3.0103;FS=1.782;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.83;ReadPosRankSum=0.735;SOR=0.837;set=HC	GT:AD:AF:DP	0/1:193,288:0.60:481
chr14	92344249	rs10147178	T	G	10998.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.197;ClippingRankSum=0.000;DB;DP=457;ExcessHet=3.0103;FS=1.787;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.23;ReadPosRankSum=0.083;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:181,273:0.60:454
chr14	92344300	rs2498847	A	G	3504.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:113,155:0.58:268
chr14	92347680	rs2430347	A	G	7230.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr14	92403660	rs2474028	T	C	1065.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr14	92413222	rs117567118	A	C	2396.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:62,101:0.62:163
chr14	92420861	rs2430336	C	T	179.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:21,10:0.32:31
chr14	92461963	rs34736578	CT	C	93.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.618;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=1.157;QD=2.76;ReadPosRankSum=2.498;SOR=1.071;set=HC	GT:AD:AF:DP	0/1:22,12:0.35:34
chr14	92477168	rs2277526	A	G	1663.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:117,68:0.37:185
chr14	92478198	rs7151632	A	G	271.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:26,13:0.33:39
chr14	92491853	rs2295171	T	C	176.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:35,11:0.24:46
chr14	92491860	.	C	CCCG	275.73	.	AC=1;AF=0.500;AN=2;DP=49;set=Intersection	GT:AD:AF:DP	0/1:35,11:0.24:46
chr14	92530912	rs150082297	A	G	271.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:9,11:0.55:20
chr14	92537088	rs11370562	C	CT	59.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.038;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.60;ReadPosRankSum=0.389;SOR=0.922;set=HC	GT:AD:AF:DP	0/1:15,8:0.35:23
chr14	92549586	rs16999141	G	A	2541.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.715;ClippingRankSum=0.000;DB;DP=289;ExcessHet=3.0103;FS=2.017;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.92;ReadPosRankSum=1.644;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:160,125:0.44:285
chr14	92559678	rs4904834	G	C	73.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.280;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=1.999;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.51;ReadPosRankSum=-1.123;SOR=0.260;set=HC	GT:AD:AF:DP	0/1:15,6:0.29:21
chr14	92560311	rs2402108	A	G	76.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:21,7:0.25:28
chr14	92563254	rs35079962	A	AT	138.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.510;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=2.395;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.56;ReadPosRankSum=0.087;SOR=0.233;set=HC	GT:AD:AF:DP	0/1:23,16:0.41:39
chr14	92588155	rs34343740	AT	A	661.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.968;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=0.610;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.927;QD=3.34;ReadPosRankSum=0.480;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:124,74:0.37:198
chr14	92792030	rs77385755	G	C	465.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:33,20:0.38:53
chr14	92792255	rs941646	G	A	8563.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr14	92792432	rs941645	T	C	1392.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr14	92905817	rs4900122	A	G	5884.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr14	92909073	rs941650	T	C	9492.77	.	AC=2;AF=1.00;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	1/1:0,366:1.00:366
chr14	92909700	rs74073080	C	T	3193.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:157,148:0.49:305
chr14	92909979	rs72631612	C	T	404.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:57,22:0.28:79
chr14	92915625	rs36228701	TACACACACAC	T	1848.73	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;QD=42.02;SOR=2.765;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr14	92920423	rs17783624	C	A	4836.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:3,184:0.98:187
chr14	92922681	rs7156906	A	G	1399.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr14	92922713	rs7158400	T	C	3293.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:2,119:0.98:121
chr14	92922900	rs77671856	G	A	6644.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr14	92958522	rs45587635	A	C	710.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:69,38:0.36:107
chr14	92959216	rs11623883	G	A	2234.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr14	92960025	rs4904942	T	C	2865.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr14	93118198	rs3814830	C	T	7270.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr14	93118668	rs3742717	C	T	16954.77	.	AC=2;AF=1.00;AN=2;DB;DP=619;set=Intersection	GT:AD:AF:DP	1/1:3,607:1.00:610
chr14	93154537	rs71698059	TGGC	T	15351.73	.	AC=2;AF=1.00;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	1/1:0,350:1.00:350
chr14	93170741	rs2250672	T	C	7125.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr14	93170901	rs2402189	A	C	4293.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr14	93170993	rs9791	C	T	2564.77	.	AC=1;AF=0.500;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	0/1:211,131:0.38:342
chr14	93173010	rs17128502	C	T	2830.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:78,131:0.63:209
chr14	93178191	rs1951708	A	G	21283.77	.	AC=2;AF=1.00;AN=2;DB;DP=803;set=Intersection	GT:AD:AF:DP	1/1:0,796:1.00:796
chr14	93182466	rs1242119	G	A	1884.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:121,92:0.43:213
chr14	93183565	rs2295987	C	T	456.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:16,19:0.54:35
chr14	93185297	rs78143291	C	CCT	1288.73	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:38,35:0.48:73
chr14	93199203	rs1613441	T	A	2930.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:65,124:0.66:189
chr14	93276654	rs1040835	T	C	3209.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:104,145:0.58:249
chr14	93276806	rs1040833	C	T	1225.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:21,50:0.70:71
chr14	93282872	rs142530146	T	TCTTCG	271.73	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr14	93285962	rs12880298	G	A	539.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:12,23:0.66:35
chr14	93286291	rs10716250	AC	A	1359.73	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:35,50:0.59:85
chr14	93290723	rs3818256	A	G	1015.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:44,42:0.49:86
chr14	93290856	rs2273646	T	C	6310.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.981;ClippingRankSum=0.000;DB;DP=329;ExcessHet=3.0103;FS=0.829;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.24;ReadPosRankSum=1.023;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:165,163:0.50:328
chr14	93290859	rs2273645	C	T	6261.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.608;ClippingRankSum=0.000;DB;DP=323;ExcessHet=3.0103;FS=0.843;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.45;ReadPosRankSum=1.397;SOR=0.769;set=HC	GT:AD:AF:DP	0/1:160,162:0.50:322
chr14	93303604	rs4904994	C	T	2407.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:39,94:0.71:133
chr14	93303850	rs113573267	T	TG	3642.73	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:38,93:0.71:131
chr14	93303854	rs74598769	T	C	3549.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.295;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=0.904;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.34;ReadPosRankSum=-0.652;SOR=0.574;set=HC	GT:AD:AF:DP	0/1:35,86:0.71:121
chr14	93303855	rs34061602	G	T	3527.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.171;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=2.036;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.40;ReadPosRankSum=-0.929;SOR=0.466;set=HC	GT:AD:AF:DP	0/1:34,86:0.72:120
chr14	93389403	rs7159323	A	C	2237.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr14	93389435	rs9658638	C	T	2970.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr14	93392834	rs7146118	C	A	4467.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr14	93398144	rs11851859	A	G	2989.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:57,125:0.69:182
chr14	93398849	rs9658664	G	A	2244.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:47,91:0.66:138
chr14	93399101	rs729940	C	T	1788.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:197,96:0.33:293
chr14	93401178	rs941581	A	G	8551.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:2,313:0.99:315
chr14	93401316	rs7610	T	C	885.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr14	93404674	rs6575304	T	C	394.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:37,19:0.34:56
chr14	93404737	rs8006516	C	T	1072.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:97,54:0.36:151
chr14	93407062	rs1043542	A	G	2375.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:171,128:0.43:299
chr14	93407195	rs142097656	T	TA	2053.73	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:124,73:0.37:197
chr14	93407248	rs11446	A	G	802.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:75,40:0.35:115
chr14	93407301	rs13316	C	A	823.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:24,38:0.61:62
chr14	93532665	rs370298561	ATG	A	3367.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.832;ClippingRankSum=0.000;DB;DP=259;ExcessHet=3.0103;FS=1.770;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=1.361;QD=19.13;ReadPosRankSum=0.002;SOR=1.008;set=HC	GT:AD:AF:DP	0/1:56,120:0.68:176
chr14	93649501	rs1046099	A	G	837.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:14,37:0.73:51
chr14	93651992	rs1268371	T	C	616.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:21,30:0.59:51
chr14	93655420	.	C	T	407.77	.	AC=1;AF=0.500;AN=2;DP=26;set=Intersection	GT:AD:AF:DP	0/1:10,16:0.62:26
chr14	93673580	rs2255370	A	G	243.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:13,13:0.50:26
chr14	93681725	rs1263395	G	A	1712.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:43,75:0.64:118
chr14	93686568	.	CTTTTT	C	94.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.347;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;FS=2.207;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=-0.350;QD=2.37;ReadPosRankSum=-0.156;SOR=0.204;set=HC	GT:AD:AF:DP	0/1:34,6:0.15:40
chr14	93693422	rs2905	C	T	1951.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:155,104:0.40:259
chr14	93712290	rs61991737	C	A	3415.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:133,160:0.55:293
chr14	93933974	rs34277584	C	CTTTTTTT	202.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.068;ClippingRankSum=-0.000;DB;DP=28;ExcessHet=3.0103;FS=8.451;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=28.96;ReadPosRankSum=1.309;SOR=1.850;set=HC	GT:AD:AF:DP	0/1:2,5:0.71:7
chr14	93943998	rs61992606	G	A	2641.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:116,128:0.52:244
chr14	93953904	rs61992611	G	A	623.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.130;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=2.167;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.91;ReadPosRankSum=3.283;SOR=0.422;set=HC	GT:AD:AF:DP	0/1:39,31:0.44:70
chr14	93953907	rs33942732	A	AT	1268.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.061;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=17.87;ReadPosRankSum=1.237;SOR=0.530;set=HC	GT:AD:AF:DP	1/1:5,66:0.93:71
chr14	93954192	rs12884458	C	T	1006.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:32,41:0.56:73
chr14	93962691	rs8006093	G	A	522.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr14	93963402	rs6575337	A	G	246.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chr14	93994870	rs17094893	A	G	545.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:82,35:0.30:117
chr14	93994954	rs28420706	G	A	646.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:79,40:0.34:119
chr14	93998806	rs942068	C	A	2836.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr14	94007075	rs1951716	C	T	783.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:67,43:0.39:110
chr14	94008753	rs12893237	A	G	2324.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr14	94088369	rs28670114	T	C	2942.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:101,122:0.55:223
chr14	94088587	rs4905081	G	A	2406.77	.	AC=1;AF=0.500;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	0/1:262,132:0.34:394
chr14	94097287	rs2148563	G	A	10157.77	.	AC=2;AF=1.00;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	1/1:0,382:1.00:382
chr14	94103602	rs4905082	G	A	12504.77	.	AC=2;AF=1.00;AN=2;DB;DP=473;set=Intersection	GT:AD:AF:DP	1/1:0,471:1.00:471
chr14	94109829	rs943318	G	A	630.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr14	94113018	.	C	A	2555.77	.	AC=1;AF=0.500;AN=2;DP=312;set=Intersection	GT:AD:AF:DP	0/1:172,132:0.43:304
chr14	94152768	rs2296686	C	G	525.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:43,23:0.35:66
chr14	94160521	rs943323	C	A	1931.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr14	94160611	rs960888	G	A	5241.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr14	94172980	rs45557238	G	A	787.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:89,41:0.32:130
chr14	94187832	rs1887197	C	T	3833.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr14	94192137	rs10873436	C	T	1496.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr14	94245452	rs34914817	A	G	164.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:15,9:0.38:24
chr14	94245649	rs4905087	A	G	5666.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.178;ClippingRankSum=0.000;DB;DP=410;ExcessHet=3.0103;FS=0.552;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.92;ReadPosRankSum=0.957;SOR=0.623;set=HC	GT:AD:AF:DP	0/1:255,152:0.37:407
chr14	94245652	rs4900195	C	T	5632.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.280;ClippingRankSum=0.000;DB;DP=425;ExcessHet=3.0103;FS=0.552;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.32;ReadPosRankSum=1.023;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:267,156:0.37:423
chr14	94391699	rs10141024	G	A	3045.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:103,143:0.58:246
chr14	94400394	rs113402958	C	T	347.03	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:1,14:0.93:15
chr14	94400431	rs11625548	T	C	471.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:7,20:0.74:27
chr14	94400906	rs12370	G	A	209.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:17,11:0.39:28
chr14	94403973	rs56003871	C	T	364.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:44,20:0.31:64
chr14	94404217	rs34365480	G	C	1356.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:154,69:0.31:223
chr14	94405871	rs10873442	G	C	9708.77	.	AC=2;AF=1.00;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	1/1:0,368:1.00:368
chr14	94406096	rs7155320	A	C	625.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr14	94410275	rs35894364	CA	C	984.73	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:80,49:0.38:129
chr14	94410447	rs10134105	T	C	1639.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr14	94414452	rs12888439	G	A	535.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:26,25:0.49:51
chr14	94417218	rs185681424	G	A	2792.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:96,126:0.57:222
chr14	94417421	rs7147919	G	A	6658.77	.	AC=1;AF=0.500;AN=2;DB;DP=455;set=Intersection	GT:AD:AF:DP	0/1:152,299:0.66:451
chr14	94417541	rs4277287	A	G	4015.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr14	94417586	rs4483793	G	A	1195.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:30,49:0.62:79
chr14	94419665	rs68087715	G	T	1500.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:143,82:0.36:225
chr14	94419888	rs4243701	A	G	1019.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr14	94421279	rs138190444	G	GA	812.73	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:34,43:0.56:77
chr14	94421488	rs7161588	C	T	1985.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:206,108:0.34:314
chr14	94464432	rs733166	A	G	7655.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:2,281:0.99:283
chr14	94464489	rs10142728	G	A	3521.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:135,168:0.55:303
chr14	94466081	rs4905137	C	G	1899.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr14	94467549	rs60333700	C	T	3374.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:100,163:0.62:263
chr14	94469801	rs12890024	A	G	206.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:28,15:0.35:43
chr14	94492867	rs60927226	TGGC	T	1695.73	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:52,45:0.46:97
chr14	94505283	rs2295216	C	G	5154.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.096;ClippingRankSum=0.000;DB;DP=378;ExcessHet=3.0103;FS=0.385;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.78;ReadPosRankSum=0.781;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:146,228:0.61:374
chr14	94510275	rs79811936	C	T	2454.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:64,111:0.63:175
chr14	94510964	rs2273226	T	C	9771.77	.	AC=2;AF=1.00;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	1/1:0,363:1.00:363
chr14	94512415	rs8021300	T	C	2261.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr14	94517533	rs112814907	C	CCACGG,CCAGGG	1086.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=26;set=Intersection	GT:AF:DP	1/2:0.50,0.50:26
chr14	94519199	rs3790045	C	T	991.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr14	94521263	rs11624586	C	T	1915.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:160,95:0.37:255
chr14	94524216	rs1056810	T	C	1596.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:78,79:0.50:157
chr14	94524333	rs11628346	G	C	538.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:18,21:0.54:39
chr14	94527041	.	AAC	A	112.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.172;ClippingRankSum=0.000;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.17;ReadPosRankSum=-1.303;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:43,9:0.17:52
chr14	94527525	rs11846519	C	T	3859.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.16;SOR=2.282;set=HC	GT:AD:AF:DP	1/1:0,113:1.00:113
chr14	94527525	.	CCTAGAGCAT	TCTAGAGCAC,TCTAGAGCAT	1026	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.26;FR=0.5000,0.5000;HP=2;HapScore=2;MGOF=3;MMLQ=28;MQ=60.0;NF=5,23;NR=30,79;PP=667,1026;QD=20.5847964246;SC=AGTGTAATGCCCTAGAGCATT;SbPval=0.89;Source=Platypus;TC=102;TCF=23;TCR=79;TR=35,102;WE=94527542;WS=94527515;set=Platypus	GT:AF:DP	0/1:0.34:102
chr14	94527534	rs77450541	T	C	932.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.522;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.03;ReadPosRankSum=0.637;SOR=0.820;set=HC	GT:AD:AF:DP	0/1:55,38:0.41:93
chr14	94546194	rs11624943	G	A	914.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:56,41:0.42:97
chr14	94554550	rs998518	T	G	3775.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:2,135:0.99:137
chr14	94563064	rs56294923	T	C	549.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.960;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=-1.873;QD=18.96;ReadPosRankSum=-2.141;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:6,23:0.79:29
chr14	94563193	rs7157940	T	C	6425.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr14	94564035	rs2896258	A	G	5891.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.55;SOR=0.704;set=HC	GT:AD:AF:DP	1/1:0,181:1.00:181
chr14	94564035	.	ATTCA	GTTCA,GTTCG	1192	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.4;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=6;MMLQ=24;MQ=60.0;NF=60,24;NR=59,19;PP=1192,505;QD=10.3090017861;SC=GTGAATAAGCATTCACGGATA;SbPval=0.54;Source=Platypus;TC=121;TCF=61;TCR=60;TR=119,43;WE=94564047;WS=94564025;set=Platypus	GT:AF:DP	0/1:0.98:121
chr14	94564039	rs2402407	A	G	1126.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.359;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=1.918;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.19;ReadPosRankSum=-2.100;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:117,65:0.36:182
chr14	94564058	rs2402408	G	A	1180.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:113,66:0.37:179
chr14	94566967	rs3818118	G	T	905.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:27,40:0.60:67
chr14	94567032	rs3818119	C	T	6252.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.08;SOR=1.018;set=HC	GT:AD:AF:DP	1/1:0,189:1.00:189
chr14	94567032	.	CC	TC,TT	1475	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.48;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=6;MMLQ=22;MQ=60.0;NF=75,25;NR=55,19;PP=1475,528;QD=11.6136247119;SC=GTACCCACTCCCATAGGTTTG;SbPval=0.52;Source=Platypus;TC=133;TCF=77;TCR=56;TR=130,44;WE=94567041;WS=94567022;set=Platypus	GT:AF:DP	0/1:0.98:133
chr14	94567033	rs58664992	C	T	1197.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.376;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=1.850;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.17;ReadPosRankSum=1.146;SOR=0.835;set=HC	GT:AD:AF:DP	0/1:125,69:0.36:194
chr14	94568776	rs2295217	C	T	1239.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:31,54:0.64:85
chr14	94578162	rs2239644	G	T	1201.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:35,53:0.60:88
chr14	94578188	rs1243080	C	A	926.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:29,38:0.57:67
chr14	94582130	rs3833507	T	TGGCCATGGC	2438.73	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:141,64:0.31:205
chr14	94594768	rs958187	T	G	7261.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr14	94595989	rs2273514	T	C	2403.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:102,110:0.52:212
chr14	94696808	rs3833506	CAT	C	274.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:18,9:0.33:27
chr14	94697192	rs35773091	G	A	148.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:32,10:0.24:42
chr14	94700138	rs4905172	C	G	1828.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr14	94708494	rs12431501	C	T	1022.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:81,45:0.36:126
chr14	94716388	rs4905173	G	A	399.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:22,18:0.45:40
chr14	94722748	rs6575402	T	C	270.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:13,12:0.48:25
chr14	94722764	rs6575403	C	A	363.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:15,16:0.52:31
chr14	94724949	rs2180399	T	C	222.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:14,12:0.46:26
chr14	94731910	rs1107110	A	G	1120.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:72,48:0.40:120
chr14	94732107	rs3827899	T	C	860.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:99,49:0.33:148
chr14	94733474	rs1950644	A	T	108.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:4,5:0.56:9
chr14	94745083	rs5810667	G	GT	1117.73	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:104,83:0.44:187
chr14	94750292	rs1950641	G	A	1649.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:144,88:0.38:232
chr14	94750314	rs41313509	C	A	1908.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:166,104:0.39:270
chr14	94756119	rs2232704	C	T	783.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:54,36:0.40:90
chr14	94756450	rs2232700	T	A	1892.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:183,98:0.35:281
chr14	94756750	rs941591	T	C	2486.77	.	AC=1;AF=0.500;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	0/1:216,133:0.38:349
chr14	94756794	rs941590	T	C	2358.77	.	AC=1;AF=0.500;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:197,119:0.38:316
chr14	94756943	rs45505795	G	C	1739.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:44,80:0.65:124
chr14	94772504	rs1042394	G	A	2906.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:88,134:0.60:222
chr14	94776219	rs2228542	C	T	6336.77	.	AC=1;AF=0.500;AN=2;DB;DP=476;set=Intersection	GT:AD:AF:DP	0/1:180,291:0.62:471
chr14	94776221	rs2228541	A	C	3143.77	.	AC=1;AF=0.500;AN=2;DB;DP=467;set=Intersection	GT:AD:AF:DP	0/1:287,175:0.38:462
chr14	94776387	rs2281520	A	G	1683.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:48,73:0.60:121
chr14	94776401	rs11160168	T	C	3126.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr14	94776441	rs11160169	C	A	466.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:36,21:0.37:57
chr14	94831028	rs34362280	G	C	1478.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr14	94833033	rs1956172	T	C	8953.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:2,326:0.99:328
chr14	94844947	rs28929474	C	T	2268.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:95,107:0.53:202
chr14	94847415	rs6647	A	G	1719.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:51,77:0.60:128
chr14	94909630	rs3818257	C	T	1490.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:46,69:0.60:115
chr14	94914455	rs10129672	A	T	857.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:13,31:0.70:44
chr14	94929367	rs2295652	G	T	1521.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:43,67:0.61:110
chr14	94929541	rs2224418	G	A	2129.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:81,99:0.55:180
chr14	94929660	rs11624364	G	A	321.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:14,13:0.48:27
chr14	94930984	rs13379439	G	T	1581.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:20,60:0.75:80
chr14	94931016	rs8020984	T	G	2510.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:43,103:0.71:146
chr14	94931105	rs11628722	A	G	4345.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:123,195:0.61:318
chr14	94933473	rs28618118	C	A	1503.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:53,70:0.57:123
chr14	94933640	rs28583900	A	T	2354.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:93,108:0.54:201
chr14	94933695	rs17090921	G	A	1868.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:104,89:0.46:193
chr14	94935566	rs4900231	G	A	2134.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:134,107:0.44:241
chr14	94936107	rs4905204	G	A	1264.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:99,66:0.40:165
chr14	94942391	rs10146263	G	A	1045.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:63,48:0.43:111
chr14	94956134	rs3736803	G	A	512.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:57,30:0.34:87
chr14	95029852	rs5508	G	T	3640.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:80,142:0.64:222
chr14	95033275	rs1005348	T	G	651.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:48,30:0.38:78
chr14	95033356	rs5510	C	T	1558.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:140,88:0.39:228
chr14	95033595	rs5511	A	T	500.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:49,26:0.35:75
chr14	95033671	rs3827893	A	T	240.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.626;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=7.858;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.67;ReadPosRankSum=-0.667;SOR=0.037;set=HC	GT:AD:AF:DP	0/1:11,8:0.42:19
chr14	95033681	rs10133253	A	G	185.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.465;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.38;ReadPosRankSum=-0.489;SOR=0.086;set=HC	GT:AD:AF:DP	0/1:9,6:0.40:15
chr14	95033708	rs17091071	A	C	153.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:7,7:0.50:14
chr14	95034342	rs2070777	T	A	891.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:49,39:0.44:88
chr14	95053890	rs6115	G	A	7008.77	.	AC=1;AF=0.500;AN=2;DB;DP=524;set=Intersection	GT:AD:AF:DP	0/1:200,314:0.61:514
chr14	95054176	rs6112	T	C	9748.77	.	AC=1;AF=0.500;AN=2;DB;DP=663;set=Intersection	GT:AD:AF:DP	0/1:241,416:0.63:657
chr14	95057270	rs6107	G	A	1058.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:42,49:0.54:91
chr14	95057401	.	T	C	119	.	AC=1;AF=0.500;AN=2;BRF=0.69;FR=0.5000;HP=2;HapScore=2;MGOF=42;MMLQ=24;MQ=60.0;NF=1;NR=6;PP=119;QD=21.9673160782;SC=CCAGTTCACTTTATTCAATTC;SbPval=0.68;Source=Platypus;TC=13;TCF=2;TCR=11;TR=7;WE=95057409;WS=95057391;set=Platypus	GT:AD:AF:DP	1/0:6,7:0.54:13
chr14	95058360	rs6109	A	G	847.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:18,34:0.65:52
chr14	95058462	rs6116	A	C	2644.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:62,110:0.64:172
chr14	95058631	rs6108	A	T	2011.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:54,87:0.62:141
chr14	95078677	rs1884082	G	T	6396.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr14	95080803	rs4934	G	A	7989.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr14	95110017	rs1884084	G	T	900.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:97,47:0.33:144
chr14	95566068	.	T	TAC	102.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.019;ClippingRankSum=0.000;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=-0.452;QD=1.32;ReadPosRankSum=-0.153;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:64,14:0.18:78
chr14	95574594	rs34975585	G	GT	129.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.503;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=14.291;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.88;ReadPosRankSum=1.338;SOR=2.694;set=HC	GT:AD:AF:DP	0/1:51,18:0.26:69
chr14	95581899	rs2275182	G	A	2403.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:66,99:0.60:165
chr14	95596619	rs117349874	A	C	291.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:12,13:0.52:25
chr14	95682152	rs377356751	CTGTGTGTGTGTGTGTG	CTGTG,CTG,C	1345.73	.	AC=1,1,0;AF=0.500,0.500,0.00;AN=2;DB;DP=109;set=Intersection	GT:AF:DP	2/1:0.61,0.27:56
chr14	95688959	rs945456	C	G	4424.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:2,171:0.99:173
chr14	95690355	rs41286556	A	G	218.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:24,11:0.31:35
chr14	95696275	rs72710126	G	A	1962.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:49,83:0.63:132
chr14	95884323	rs12434757	G	A	549.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:19,27:0.59:46
chr14	95898487	rs1187747	G	A	873.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.512;ClippingRankSum=0.000;DB;DP=228;ExcessHet=3.0103;FS=1.918;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.92;ReadPosRankSum=-0.612;SOR=0.883;set=HC	GT:AD:AF:DP	0/1:158,65:0.29:223
chr14	95899477	rs10139523	T	C	667.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:34,26:0.43:60
chr14	95903027	rs729667	G	C	451.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr14	95905840	rs17092236	C	T	612.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:47,30:0.39:77
chr14	95906321	rs9671369	G	A	2989.77	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:196,146:0.43:342
chr14	95906441	rs910791	A	G	997.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:75,50:0.40:125
chr14	95906476	rs910790	C	T	449.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.735;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=1.091;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.69;ReadPosRankSum=0.732;SOR=0.971;set=HC	GT:AD:AF:DP	0/1:54,25:0.32:79
chr14	95910969	rs36019358	CAG	C	3366.73	.	AC=1;AF=0.500;AN=2;DB;DP=285;MQ=60.08;set=Intersection	GT:AD:AF:DP	0/1:185,97:0.34:282
chr14	95918466	rs7144636	A	G	1176.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.290;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=11.693;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.65;ReadPosRankSum=1.743;SOR=2.104;set=HC	GT:AD:AF:DP	0/1:68,33:0.33:101
chr14	95918473	rs7144641	A	G	1302.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.153;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=9.983;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.04;ReadPosRankSum=0.839;SOR=1.821;set=HC	GT:AD:AF:DP	0/1:78,40:0.34:118
chr14	95918548	rs11362194	AC	A	4077.73	.	AC=1;AF=0.500;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	0/1:246,154:0.39:400
chr14	95918625	rs4905318	T	C	3595.77	.	AC=1;AF=0.500;AN=2;DB;DP=495;set=Intersection	GT:AD:AF:DP	0/1:298,193:0.39:491
chr14	95918741	rs4905319	G	A	1966.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.527;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.95;ReadPosRankSum=0.428;SOR=0.623;set=HC	GT:AD:AF:DP	0/1:63,53:0.46:116
chr14	95918745	rs4905320	C	T	1940.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.779;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.97;ReadPosRankSum=-0.505;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:57,51:0.47:108
chr14	95918759	rs4905321	C	T	939.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:44,38:0.46:82
chr14	95921741	rs4905324	C	T	1601.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:176,90:0.34:266
chr14	95923421	rs375479710	CAA	C	716.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.623;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=1.049;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=0.871;QD=5.64;ReadPosRankSum=-0.468;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:77,50:0.39:127
chr14	95923470	rs146162422	ACTGTC	A	4693.73	.	AC=1;AF=0.500;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	0/1:244,131:0.35:375
chr14	95923670	rs2024863	A	C	2271.77	.	AC=1;AF=0.500;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	0/1:253,121:0.32:374
chr14	95923756	rs10610273	GGT	G	106.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.656;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=4.729;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.78;ReadPosRankSum=-0.458;SOR=1.683;set=HC	GT:AD:AF:DP	0/1:50,10:0.17:60
chr14	95999820	rs3825546	T	C	2759.77	.	AC=1;AF=0.500;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	0/1:219,137:0.38:356
chr14	96000090	rs45528633	G	A	300.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:29,15:0.34:44
chr14	96010424	rs11628901	G	A	2494.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:84,111:0.57:195
chr14	96103031	rs7144328	G	A	609.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:47,31:0.40:78
chr14	96103099	rs4905366	A	G	1621.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:55,76:0.58:131
chr14	96103184	rs7144361	C	T	1288.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:125,71:0.36:196
chr14	96103269	rs11160283	G	A	1615.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:41,71:0.63:112
chr14	96103335	rs151170628	G	A	431.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:18,20:0.53:38
chr14	96129023	rs71415006	C	T	376.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:37,20:0.35:57
chr14	96131432	rs1743491	A	G	3583.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr14	96131575	rs59088277	T	G	49.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:9,4:0.31:13
chr14	96134589	rs7151040	C	T	2569.77	.	AC=1;AF=0.500;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	0/1:213,128:0.38:341
chr14	96136775	rs2296310	C	A	2064.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:183,109:0.37:292
chr14	96136794	rs2249778	A	G	2383.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:201,125:0.38:326
chr14	96137935	rs911678	G	A	71.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.820;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.49;ReadPosRankSum=-1.249;SOR=0.188;set=HC	GT:AD:AF:DP	0/1:11,5:0.31:16
chr14	96152728	rs11160284	T	C	2579.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr14	96157187	rs1064017	G	A	5408.77	.	AC=1;AF=0.500;AN=2;DB;DP=439;set=Intersection	GT:AD:AF:DP	0/1:158,267:0.63:425
chr14	96157331	rs2075770	G	T	819.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:78,43:0.36:121
chr14	96157482	rs1743530	C	T	563.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:7,23:0.77:30
chr14	96157698	rs1748958	A	G	2225.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr14	96179118	.	G	GA	258.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.317;ClippingRankSum=0.000;DP=277;ExcessHet=3.0103;FS=3.756;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=2.775;QD=0.99;ReadPosRankSum=0.253;SOR=0.623;set=HC	GT:AD:AF:DP	0/1:214,48:0.18:262
chr14	96556828	rs2369421	C	T	2706.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr14	96556914	rs2093722	T	C	8385.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr14	96557121	rs10148419	T	C	8561.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr14	96671139	rs1799722	C	T	2089.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:62,100:0.62:162
chr14	96671222	rs5223	G	T	1379.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:40,63:0.61:103
chr14	96703347	rs2069577	C	A	540.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:64,30:0.32:94
chr14	96704284	rs885818	C	T	834.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:25,38:0.60:63
chr14	96706640	rs11627456	C	T	802.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:30,34:0.53:64
chr14	96707457	rs5224	A	G	13590.77	.	AC=2;AF=1.00;AN=2;DB;DP=510;set=Intersection	GT:AD:AF:DP	1/1:0,503:1.00:503
chr14	96728926	rs145455564	T	TTC	84.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.579;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.10;ReadPosRankSum=-0.000;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr14	96728959	rs138084614	TTTTTG	T	180.74	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.94;QD=18.07;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr14	96728992	rs11625093	C	T	376.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:6,19:0.76:25
chr14	96730142	rs2071084	A	G	7889.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr14	96731117	rs11620928	A	G	1788.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:49,75:0.60:124
chr14	96734584	rs11160324	T	A	165.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:29,10:0.26:39
chr14	96742603	rs12893091	G	A	3539.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:91,157:0.63:248
chr14	96757361	rs10454690	T	A	644.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:15,27:0.64:42
chr14	96758160	rs2275022	C	T	556.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:12,20:0.62:32
chr14	96761557	rs1770547	A	C	1825.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:46,73:0.61:119
chr14	96768394	.	C	T	1784.77	.	AC=1;AF=0.500;AN=2;DP=388;set=Intersection	GT:AD:AF:DP	0/1:273,112:0.29:385
chr14	96768514	rs3215949	G	GA	759.73	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:38,46:0.55:84
chr14	96770720	rs8007718	T	G	1341.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:84,59:0.41:143
chr14	96770952	rs34674555	CAA	C,CAAA	2052.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.017;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=7.071;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=16.69;ReadPosRankSum=1.535;SOR=1.230;set=HC	GT:AD:AF:DP	1/2:14,62,47:0.50,0.38:123
chr14	96771959	rs2289622	A	G	7425.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr14	96772330	rs2289623	A	C	130.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:5,6:0.55:11
chr14	96776008	rs2289628	A	G	263.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:33,13:0.28:46
chr14	96777408	rs3759602	T	C	2104.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:41,91:0.69:132
chr14	96777468	rs3759601	G	C	3812.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:97,164:0.63:261
chr14	96778095	rs7359066	T	G	224.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:38,15:0.28:53
chr14	96779865	rs7155874	C	T	201.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:15,11:0.42:26
chr14	96779895	rs1890914	A	G	166.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr14	96781912	rs9323945	T	C	5201.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr14	96797724	rs1822372	G	A	6095.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr14	96813703	rs4905483	A	T	2565.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr14	96829290	rs12434329	G	A	6183.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr14	96848565	.	CT	C	240.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.645;ClippingRankSum=0.000;DP=78;ExcessHet=3.0103;FS=7.802;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.349;QD=3.21;ReadPosRankSum=0.069;SOR=1.778;set=HC	GT:AD:AF:DP	0/1:46,29:0.39:75
chr14	96848899	rs4905486	A	G	556.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:35,28:0.44:63
chr14	96852071	rs1545280	T	C	1380.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:34,58:0.63:92
chr14	96864309	rs8019939	A	G	506.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr14	96871104	rs2275554	G	A	310.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.506;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=1.858;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.63;ReadPosRankSum=1.286;SOR=0.998;set=HC	GT:AD:AF:DP	0/1:93,25:0.21:118
chr14	96871337	rs8009774	CC	TT	82.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.369;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=4.260;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.35;ReadPosRankSum=0.732;SOR=0.061;set=HC	GT:AD:AF:DP	0/1:5,3:0.38:8
chr14	96916228	rs10444759	C	T	1407.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.728;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.844;MLEAC=1;MLEAF=0.500;MQ=60.39;MQRankSum=0.304;QD=17.17;ReadPosRankSum=0.918;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:34,48:0.59:82
chr14	96916232	rs11424079	G	GT	226.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.184;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=2.681;MLEAC=1;MLEAF=0.500;MQ=60.42;MQRankSum=0.718;QD=3.60;ReadPosRankSum=1.679;SOR=1.322;set=HC	GT:AD:AF:DP	0/1:38,25:0.40:63
chr14	96922752	rs2369679	C	G	4955.77	.	AC=1;AF=0.500;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	0/1:180,226:0.56:406
chr14	96939108	rs60920648	T	C	430.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:52,25:0.32:77
chr14	96944878	rs76293597	G	A	1387.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:178,87:0.33:265
chr14	96953412	rs80304258	A	T	693.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:152,58:0.28:210
chr14	96987154	.	GTA	G	45	.	AC=1;AF=0.500;AN=2;BRF=0.17;FR=0.5000;HP=2;HapScore=2;MGOF=4;MMLQ=20;MQ=60.0;NF=1;NR=2;PP=45;QD=20.0;SC=AACAGTGCCTGTATATATATA;SbPval=0.5;Source=Platypus;TC=14;TCF=7;TCR=7;TR=3;WE=96987163;WS=96987144;set=Platypus	GT:AD:AF:DP	1/0:11,3:0.21:14
chr14	96987303	rs45604538	A	T	253.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:25,14:0.36:39
chr14	96987437	rs10139164	A	G	83.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:20,6:0.23:26
chr14	96993995	rs7146883	A	G	55.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:14,4:0.22:18
chr14	96997773	rs76515935	G	A	497.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:33,25:0.43:58
chr14	96998641	rs185780744	G	T	490.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.383;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=2.483;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.55;ReadPosRankSum=1.419;SOR=1.127;set=HC	GT:AD:AF:DP	0/1:48,17:0.26:65
chr14	96998643	rs45581934	G	T	624.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.664;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=2.454;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.68;ReadPosRankSum=1.594;SOR=1.106;set=HC	GT:AD:AF:DP	0/1:51,21:0.29:72
chr14	97022168	.	A	AT	312.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.287;ClippingRankSum=0.000;DP=225;ExcessHet=3.0103;FS=5.416;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.42;ReadPosRankSum=0.446;SOR=0.359;set=HC	GT:AD:AF:DP	0/1:176,44:0.20:220
chr14	97312642	rs1951311	G	A	285.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:3,11:0.79:14
chr14	97321689	rs2230532	C	T	3873.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.198;ClippingRankSum=0.000;DB;DP=587;ExcessHet=3.0103;FS=1.814;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.70;ReadPosRankSum=0.056;SOR=0.519;set=HC	GT:AD:AF:DP	0/1:361,217:0.38:578
chr14	97342500	rs45457797	C	G	5154.77	.	AC=1;AF=0.500;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	0/1:155,236:0.60:391
chr14	98217929	rs12893126	T	C	375.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr14	98435696	rs2124843	T	C	12399.77	.	AC=2;AF=1.00;AN=2;DB;DP=501;set=Intersection	GT:AD:AF:DP	1/1:2,484:1.00:486
chr14	98444253	rs8015127	C	A	3205.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr14	98444369	rs8016584	T	C	3647.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr14	99392468	rs200318	C	G	415.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:26,18:0.41:44
chr14	99642647	rs2487507	T	A	1287.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:82,60:0.42:142
chr14	99879233	.	G	A	124.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.977;ClippingRankSum=0.000;DP=88;ExcessHet=3.0103;FS=5.461;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.45;ReadPosRankSum=-1.118;SOR=0.199;set=HC	GT:AD:AF:DP	0/1:72,14:0.16:86
chr14	99961830	rs2069492	T	C	1523.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr14	99981858	rs11621993	G	A	2738.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr14	99988724	rs2400681	A	G	554.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr14	100002473	rs12882209	A	G	7157.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr14	100046271	rs34139518	T	TC	16067.73	.	AC=2;AF=1.00;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	1/1:0,417:1.00:417
chr14	100046280	rs111299803	T	C	4333.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.024;ClippingRankSum=0.000;DB;DP=481;ExcessHet=3.0103;FS=1.300;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.277;QD=9.07;ReadPosRankSum=-1.012;SOR=0.874;set=HC	GT:AD:AF:DP	0/1:352,126:0.26:478
chr14	100046287	rs113574307	T	C	4655.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.570;ClippingRankSum=0.000;DB;DP=527;ExcessHet=3.0103;FS=2.942;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.278;QD=8.89;ReadPosRankSum=-0.588;SOR=0.967;set=HC	GT:AD:AF:DP	0/1:386,138:0.26:524
chr14	100046311	rs112761781	C	G	6962.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.072;ClippingRankSum=0.000;DB;DP=727;ExcessHet=3.0103;FS=1.967;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=0.223;QD=9.62;ReadPosRankSum=0.390;SOR=0.856;set=HC	GT:AD:AF:DP	0/1:524,200:0.28:724
chr14	100046322	rs114885538	C	T	7571.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.339;ClippingRankSum=0.000;DB;DP=797;ExcessHet=3.0103;FS=3.692;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=0.204;QD=9.54;ReadPosRankSum=0.348;SOR=0.975;set=HC	GT:AD:AF:DP	0/1:571,223:0.28:794
chr14	100046325	rs116180933	A	G	8129.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.997;ClippingRankSum=0.000;DB;DP=821;ExcessHet=3.0103;FS=3.668;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=0.216;QD=9.95;ReadPosRankSum=0.903;SOR=1.013;set=HC	GT:AD:AF:DP	0/1:590,227:0.28:817
chr14	100046330	rs114496181	C	A	8277.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.777;ClippingRankSum=0.000;DB;DP=846;ExcessHet=3.0103;FS=4.632;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=0.182;QD=9.83;ReadPosRankSum=0.425;SOR=1.073;set=HC	GT:AD:AF:DP	0/1:601,241:0.29:842
chr14	100046331	.	A	G	8277.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=6.194;ClippingRankSum=0.000;DP=850;ExcessHet=3.0103;FS=4.632;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=0.188;QD=9.78;ReadPosRankSum=0.703;SOR=1.091;set=HC	GT:AD:AF:DP	0/1:605,241:0.28:846
chr14	100046373	rs78395743	A	T	5732.77	.	AC=1;AF=0.500;AN=2;DB;DP=905;set=Intersection	GT:AD:AF:DP	0/1:583,313:0.35:896
chr14	100069742	rs8007401	G	A	2128.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr14	100125721	rs7145262	C	T	2259.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr14	100129327	rs34890784	G	A	10684.77	.	AC=2;AF=1.00;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	1/1:0,411:1.00:411
chr14	100135306	rs12436072	G	A	6454.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr14	100158241	rs4900442	C	T	3816.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr14	100158310	rs117491281	G	A	348.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:24,16:0.40:40
chr14	100161941	.	T	TTTATTATTATTA	294.73	.	AC=2;AF=1.00;AN=2;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr14	100166228	rs3742377	G	A	12077.77	.	AC=2;AF=1.00;AN=2;DB;DP=509;set=Intersection	GT:AD:AF:DP	1/1:0,457:1.00:457
chr14	100174092	.	AT	A	198.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.739;ClippingRankSum=0.000;DP=99;ExcessHet=3.0103;FS=2.194;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.458;QD=2.31;ReadPosRankSum=0.670;SOR=0.382;set=HC	GT:AD:AF:DP	0/1:60,26:0.30:86
chr14	100182082	rs3752957	T	C	2304.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr14	100341430	rs1191121	A	G	7822.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr14	100344698	rs1191118	T	C	730.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr14	100357643	rs1191100	C	T	6549.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:6,251:0.98:257
chr14	100360855	rs1191098	A	G	651.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr14	100438325	.	C	CCCG	284.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;ClippingRankSum=-0.000;DP=17;ExcessHet=3.0103;FS=2.616;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=23.73;ReadPosRankSum=1.517;SOR=1.863;set=HC	GT:AD:AF:DP	0/1:4,8:0.67:12
chr14	100563682	rs140837823	TG	T	432.73	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:16,14:0.47:30
chr14	100592959	rs726514	G	A	469.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:52,27:0.34:79
chr14	100599164	rs941897	G	A	1970.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr14	100607360	rs1951486	T	C	1403.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:94,63:0.40:157
chr14	100608274	rs4905933	T	C	185.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:18,9:0.33:27
chr14	100615665	rs4905936	T	C	2414.77	.	AC=1;AF=0.500;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	0/1:223,127:0.36:350
chr14	100625902	rs7157599	C	T	9471.77	.	AC=2;AF=1.00;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	1/1:0,360:1.00:360
chr14	100625964	rs61165113	G	A	1335.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:101,64:0.39:165
chr14	100758502	rs11557208	G	A	1791.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.090;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=1.240;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.20;ReadPosRankSum=0.184;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:71,89:0.56:160
chr14	100759046	rs3825555	C	A	13381.77	.	AC=2;AF=1.00;AN=2;DB;DP=492;set=Intersection	GT:AD:AF:DP	1/1:0,483:1.00:483
chr14	100759277	rs3742379	C	T	3092.77	.	AC=1;AF=0.500;AN=2;DB;DP=448;set=Intersection	GT:AD:AF:DP	0/1:272,161:0.37:433
chr14	100792093	rs9324019	C	G	1252.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:112,59:0.35:171
chr14	100792220	rs7155877	C	T	19002.77	.	AC=2;AF=1.00;AN=2;DB;DP=729;set=Intersection	GT:AD:AF:DP	1/1:0,718:1.00:718
chr14	100792482	rs1951519	C	A	11860.77	.	AC=2;AF=1.00;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	1/1:0,442:1.00:442
chr14	100795139	rs35007880	G	T	8895.77	.	AC=1;AF=0.500;AN=2;DB;DP=612;set=Intersection	GT:AD:AF:DP	0/1:210,395:0.65:605
chr14	100795630	rs4905950	C	T	527.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:53,27:0.34:80
chr14	100795663	rs10147903	G	A	782.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:84,43:0.34:127
chr14	100801423	rs2234532	T	C	2033.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:2,76:0.97:78
chr14	100803364	rs2234530	A	G	5456.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr14	100803655	rs2234528	C	A	2457.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr14	100808493	rs5810992	G	GA	4482.73	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:1,188:0.99:189
chr14	100808510	rs1373	T	A	6628.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr14	100808845	rs9453	G	A	2153.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr14	100813077	rs941923	T	C	5180.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:1,181:0.99:182
chr14	100820980	rs1009812	G	A	1412.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr14	100826773	rs2234524	C	G	1449.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr14	100831835	rs1998902	C	T	806.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr14	100832065	rs200760783	CTT	C	208.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.111;ClippingRankSum=-0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.28;ReadPosRankSum=1.501;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:9,8:0.47:17
chr14	100832252	rs724392	C	T	777.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:65,40:0.38:105
chr14	100832282	rs2146105	C	G	3785.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr14	100832391	rs724391	T	C	5728.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr14	100847523	rs2181170	T	C	8523.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr14	100847707	rs2273800	A	G	4368.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:124,196:0.61:320
chr14	100847930	rs3742387	A	G	3792.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:114,174:0.60:288
chr14	100934602	rs4905966	C	T	732.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:58,39:0.40:97
chr14	101007072	rs6575788	C	G	3678.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr14	101034190	rs61993005	G	A	1135.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:139,68:0.33:207
chr14	101034419	rs58030748	T	C	229.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:30,11:0.27:41
chr14	101036052	rs7141087	T	C	1984.77	.	AC=1;AF=0.500;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	0/1:272,120:0.31:392
chr14	101138230	rs8011237	A	C	8551.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr14	101194944	rs10151914	T	G	302.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr14	101194952	rs200239189	T	TG	196.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.11;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr14	101194960	.	G	GGC	118	.	AC=2;AF=1.00;AN=2;BRF=0.5;FR=1.0000;HP=7;HapScore=4;MGOF=78;MMLQ=24;MQ=60.0;NF=2;NR=0;PP=118;QD=69.5;SC=GATGGGGGGGGCGGGGGGGGG;SbPval=1.0;Source=Platypus;TC=2;TCF=2;TCR=0;TR=2;WE=101194969;WS=101194950;set=Platypus	GT:AD:AF:DP	1/1:0,2:1.00:2
chr14	101194961	.	C	G	139	.	AC=2;AF=1.00;AN=2;BRF=0.5;FR=1.0000;HP=18;HapScore=4;MGOF=78;MMLQ=24;MQ=60.0;NF=4;NR=0;PP=139;QD=43.4428031368;SC=ATGGGGGGGGCGGGGGGGGGG;SbPval=1.0;Source=Platypus;TC=5;TCF=4;TCR=1;TR=4;WE=101194969;WS=101194950;set=Platypus	GT:AD:AF:DP	1/1:1,4:0.80:5
chr14	101194961	.	C	CG	98.25	.	AC=2;AF=1.00;AN=2;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.75;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr14	101198417	rs6575799	A	G	6771.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr14	101280767	.	T	C	1343.77	.	AC=1;AF=0.500;AN=2;DP=103;set=Intersection	GT:AD:AF:DP	0/1:40,63:0.61:103
chr14	101301038	rs3194464	C	G	4745.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:2,184:0.99:186
chr14	101311729	rs56363527	C	T	8255.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr14	101311747	rs144425654	C	T	2054.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:186,112:0.38:298
chr14	101347355	rs76090066	C	T	3223.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:65,134:0.67:199
chr14	101349017	rs6575805	A	G	2799.77	.	AC=1;AF=0.500;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	0/1:252,147:0.37:399
chr14	101391354	rs34857222	G	T	2245.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr14	101396148	rs35436326	G	A	1138.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr14	101403072	rs1956732	T	C	455.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.43;SOR=3.442;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr14	101403075	rs1956731	C	A	455.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.43;SOR=3.442;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr14	101406011	rs1951026	G	A	2367.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr14	101406022	rs1951025	T	A	2145.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr14	101409763	rs35829821	A	G	6053.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr14	101409886	rs117958441	C	T	1789.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:51,77:0.60:128
chr14	101412173	rs11847325	G	C	718.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr14	101418192	rs10713875	TG	T	2298.73	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr14	101420572	rs8015089	G	A	389.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr14	101423634	rs12887775	T	C	2772.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr14	101429287	rs34448411	G	A	646.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr14	101429459	rs72700530	G	C	3190.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr14	101429568	rs16791	G	A	1524.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr14	101429659	rs17172	G	A	327.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr14	101431194	rs4547276	A	G	6370.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr14	101431216	rs34144313	C	G	4952.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr14	101432440	rs111435301	C	CAGA	13586.73	.	AC=2;AF=1.00;AN=2;DB;DP=319;MQ=60.07;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr14	101433552	rs2145502	C	T	2587.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr14	101434356	rs4143956	A	T	1320.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr14	101435167	rs34991312	A	C	449.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr14	101435371	rs12432302	A	G	4523.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr14	101435515	rs35820579	T	C	338.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr14	101436435	rs61991083	T	C	2628.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr14	101439870	rs1956727	G	T	2517.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr14	101439916	rs1956726	T	G	5840.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:1,201:1.00:202
chr14	101442218	rs12893444	A	G	10272.77	.	AC=2;AF=1.00;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	1/1:2,378:0.99:380
chr14	101442793	rs12895798	T	C	3300.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr14	101447373	rs34158896	T	C	8335.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr14	101447517	rs10131435	A	G	3158.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr14	101453344	rs3742401	G	A	3783.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr14	101454403	rs35097045	G	C	2670.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr14	101459660	rs12880424	C	T	3915.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr14	101489858	rs12892719	C	T	535.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:14,22:0.61:36
chr14	101492224	rs7141987	T	C	3070.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr14	101492548	rs12586258	C	T	1948.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:49,87:0.64:136
chr14	101495787	rs4906031	G	A	1174.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr14	101496145	rs9324030	A	G	1848.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr14	101496574	rs12435041	C	T	1317.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.310;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.86;ReadPosRankSum=-0.691;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:18,35:0.66:53
chr14	101496579	rs12435042	C	G	1290.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.192;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.46;ReadPosRankSum=-0.409;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:15,32:0.68:47
chr14	101498483	rs8018238	C	T	2260.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.143;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=4.711;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=1.673;QD=24.31;ReadPosRankSum=-0.310;SOR=1.333;set=HC	GT:AD:AF:DP	0/1:25,68:0.73:93
chr14	101498503	rs117345379	T	C	1838.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.066;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=7.727;MLEAC=1;MLEAF=0.500;MQ=59.79;MQRankSum=1.623;QD=27.44;ReadPosRankSum=1.663;SOR=1.705;set=HC	GT:AD:AF:DP	0/1:19,48:0.72:67
chr14	101498559	.	C	T	30	.	AC=1;AF=0.500;AN=2;BRF=0.25;FR=0.5000;HP=2;HapScore=2;MGOF=67;MMLQ=24;MQ=58.97;NF=0;NR=4;PP=30;QD=16.1928031368;SC=TATGAAAGCTCCCGTCTTCCC;SbPval=1.0;Source=Platypus;TC=16;TCF=1;TCR=15;TR=4;WE=101498567;WS=101498549;set=Platypus	GT:AD:AF:DP	0/1:12,4:0.25:16
chr14	101507727	rs12894467	C	T	3642.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr14	101509287	rs7147329	A	G	1182.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:65,49:0.43:114
chr14	101512972	rs11160618	C	T	1338.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.447;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=2.587;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.28;ReadPosRankSum=0.120;SOR=0.476;set=HC	GT:AD:AF:DP	0/1:71,38:0.35:109
chr14	101512972	.	CCA	TCG	1310	.	AC=1;AF=0.500;AN=2;BRF=0.28;FR=0.5000;HP=2;HapScore=1;MGOF=2;MMLQ=24;MQ=60.0;NF=18;NR=16;PP=1310;QD=40.1019963195;SC=CGTGCTGTGCCCATTGTCTCA;SbPval=0.49;Source=Platypus;TC=98;TCF=54;TCR=44;TR=34;WE=101512982;WS=101512962;set=Platypus	GT:AD:AF:DP	0/1:64,34:0.35:98
chr14	101512974	rs10140057	A	G	1338.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.663;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=2.645;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.28;ReadPosRankSum=0.357;SOR=0.455;set=HC	GT:AD:AF:DP	0/1:72,37:0.34:109
chr14	101514371	rs10132916	T	C	1127.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:114,64:0.36:178
chr14	101514950	rs10144193	A	T	437.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:39,22:0.36:61
chr14	101518760	rs1951032	G	A	941.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:33,43:0.57:76
chr14	101518910	rs4906032	A	G	1583.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:102,79:0.44:181
chr14	101520527	rs28752084	A	C	223.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:23,12:0.34:35
chr14	101522556	rs56103835	T	C	416.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:48,24:0.33:72
chr14	101526300	rs41286574	G	A	87.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.613;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.25;ReadPosRankSum=1.627;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:21,6:0.22:27
chr14	102229418	rs142105397	G	GT	47.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.131;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=1.236;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.76;ReadPosRankSum=-0.193;SOR=0.462;set=HC	GT:AD:AF:DP	0/1:51,12:0.19:63
chr14	102252650	.	G	GT	130.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.353;ClippingRankSum=0.000;DP=29;ExcessHet=3.0103;FS=2.318;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.03;ReadPosRankSum=-0.330;SOR=0.155;set=HC	GT:AD:AF:DP	0/1:15,11:0.42:26
chr14	102302490	.	G	GT	74.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.069;ClippingRankSum=0.000;DP=107;ExcessHet=3.0103;FS=0.992;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.73;ReadPosRankSum=0.532;SOR=0.844;set=HC	GT:AD:AF:DP	0/1:84,18:0.18:102
chr14	102446161	rs3818188	G	A	3705.77	.	AC=1;AF=0.500;AN=2;DB;DP=603;set=Intersection	GT:AD:AF:DP	0/1:393,204:0.34:597
chr14	102496394	rs3830916	AGT	A	1058.73	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:71,41:0.37:112
chr14	102507065	rs17541540	G	C	4518.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:113,204:0.64:317
chr14	102548224	rs2298877	T	C	5149.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr14	102548384	rs6575895	C	T	3359.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr14	102549262	rs10782495	A	G	1845.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr14	102550069	.	T	TA	387.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.427;ClippingRankSum=0.000;DP=157;ExcessHet=3.0103;FS=1.785;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.03;ReadPosRankSum=1.433;SOR=0.901;set=HC	GT:AD:AF:DP	0/1:83,45:0.35:128
chr14	102550569	rs3742429	G	A	1488.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr14	102550803	rs4947	G	A	5784.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:3,219:0.99:222
chr14	102551795	rs35308930	T	TTAA	7544.73	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr14	102552773	rs8004640	A	G	38493.77	.	AC=2;AF=1.00;AN=2;DB;DP=873;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.98;QD=44.55;SOR=1.072;set=HC	GT:AD:AF:DP	1/1:0,864:1.00:864
chr14	102552773	.	AAT	GAG	2947	.	AC=2;AF=1.00;AN=2;BRF=0.5;FR=1.0000;HP=2;HapScore=1;MGOF=2;MMLQ=24;MQ=60.01;NF=198;NR=334;PP=2947;QD=20;SC=GGCAACACGAAATTCCATCGC;SbPval=0.49;Source=Platypus;TC=547;TCF=202;TCR=345;TR=532;WE=102552783;WS=102552763;set=Platypus	GT:AD:AF:DP	1/1:15,532:0.97:547
chr14	102552775	rs3736807	T	G	38493.77	.	AC=2;AF=1.00;AN=2;DB;DP=857;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;QD=45.34;SOR=1.083;set=HC	GT:AD:AF:DP	1/1:0,849:1.00:849
chr14	102568296	rs10873531	G	A	4310.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr14	102568367	rs8005905	T	A	4942.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr14	102675350	rs6575900	G	C	4661.77	.	AC=1;AF=0.500;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	0/1:152,212:0.58:364
chr14	102808554	rs34220197	CGTGGA	C	1133.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr14	102808562	rs56144634	C	G	1141.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr14	102815042	rs7011	C	T	5980.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr14	102891646	rs4906197	A	G	4098.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:1,152:0.99:153
chr14	102894593	rs1309353	G	A	3815.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.44;SOR=1.027;set=HC	GT:AD:AF:DP	1/1:0,150:1.00:150
chr14	102901201	rs10149146	A	G	12845.77	.	AC=2;AF=1.00;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	1/1:0,469:1.00:469
chr14	102904551	rs142320181	CCCCGCTCCCTGCT	C	1179.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr14	102918686	rs1190554	T	C	13450.77	.	AC=2;AF=1.00;AN=2;DB;DP=504;set=Intersection	GT:AD:AF:DP	1/1:0,502:1.00:502
chr14	102919047	rs2295976	C	T	1087.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr14	102963128	rs11626608	T	C	1425.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:13,51:0.80:64
chr14	102964359	rs146599191	C	CGCCCAAGCTCCCAGCTCCATCTGT	3812.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:1,61:0.98:62
chr14	102964654	rs2403058	A	G	2264.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:1,78:0.99:79
chr14	103059220	rs1057881	G	A	982.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:21,46:0.69:67
chr14	103177420	rs3783383	G	C	1147.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:99,58:0.37:157
chr14	103188738	rs61739374	C	T	4261.77	.	AC=1;AF=0.500;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	0/1:148,201:0.58:349
chr14	103192774	rs372942415	CT	C	186.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.893;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.32;ReadPosRankSum=-0.612;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:99,42:0.30:141
chr14	103341865	rs10668366	G	GT	683.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.691;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.99;ReadPosRankSum=-0.430;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:2,36:0.95:38
chr14	103388887	.	C	G	993.77	.	AC=1;AF=0.500;AN=2;DP=68;set=Intersection	GT:AD:AF:DP	0/1:21,44:0.68:65
chr14	103396706	rs148815688	C	G	1869.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr14	103397055	rs1190233	G	C	4664.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr14	103412268	rs2403107	T	C	1075.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr14	103413941	rs8007924	T	C	759.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr14	103432715	rs149830517	G	A	3782.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:112,176:0.61:288
chr14	103434530	rs2093414	T	A	3765.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.97;SOR=2.531;set=HC	GT:AD:AF:DP	1/1:0,130:1.00:130
chr14	103440282	rs1018550	G	T	14627.77	.	AC=2;AF=1.00;AN=2;DB;DP=529;set=Intersection	GT:AD:AF:DP	1/1:0,516:1.00:516
chr14	103440473	rs8009219	G	C	5685.77	.	AC=1;AF=0.500;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	0/1:148,223:0.60:371
chr14	103449863	rs36061149	C	CA	2423.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.187;ClippingRankSum=0.000;DB;DP=313;ExcessHet=3.0103;FS=4.019;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=1.327;QD=9.11;ReadPosRankSum=-0.003;SOR=1.064;set=HC	GT:AD:AF:DP	0/1:88,178:0.67:266
chr14	103523598	rs34302315	T	C	385.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:22,20:0.48:42
chr14	103566785	rs2297067	C	T	2307.77	.	AC=1;AF=0.500;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	0/1:253,122:0.33:375
chr14	103566835	rs2297066	C	G	2121.77	.	AC=1;AF=0.500;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	0/1:228,109:0.32:337
chr14	103567020	rs61418148	T	C	910.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:55,42:0.43:97
chr14	103568614	rs10131298	T	A	2338.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:138,113:0.45:251
chr14	103568729	rs10142200	A	G	2146.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:152,111:0.42:263
chr14	103568981	rs77071436	A	C	949.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:109,53:0.33:162
chr14	103570130	.	C	CGTGT	277.73	.	AC=1;AF=0.500;AN=2;DP=93;set=Intersection	GT:AD:AF:DP	0/1:68,13:0.16:81
chr14	103570132	rs151184170	C	T	650.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.625;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=3.464;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.745;QD=7.48;ReadPosRankSum=2.312;SOR=1.128;set=HC	GT:AD:AF:DP	0/1:65,22:0.25:87
chr14	103570132	.	CGC	TGT	1372	.	AC=1;AF=0.500;AN=2;BRF=0.32;FR=0.5000;HP=2;HapScore=1;MGOF=28;MMLQ=24;MQ=59.9;NF=19;NR=7;PP=1372;QD=54.8256874947;SC=GAGGCGCGCGCGCGTGTGTGT;SbPval=0.74;Source=Platypus;TC=88;TCF=60;TCR=28;TR=26;WE=103570145;WS=103570114;set=Platypus	GT:AD:AF:DP	0/1:62,26:0.30:88
chr14	103570134	rs147121761	C	T	975.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.078;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=7.467;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.127;QD=11.90;ReadPosRankSum=1.411;SOR=1.675;set=HC	GT:AD:AF:DP	0/1:51,31:0.38:82
chr14	103574714	rs10144543	C	T	1463.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:142,75:0.35:217
chr14	103576292	rs28418471	G	A	466.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:59,28:0.32:87
chr14	103576415	rs729184	A	G	5336.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr14	103576803	rs11355422	CG	C	901.73	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:62,42:0.40:104
chr14	103593950	rs1132339	C	G	12790.77	.	AC=2;AF=1.00;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	1/1:1,472:1.00:473
chr14	103595997	rs2234130	G	C	5090.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr14	103596488	rs2234131	G	A	2665.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:79,118:0.60:197
chr14	103596609	rs2234133	T	A	4525.77	.	AC=1;AF=0.500;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	0/1:121,220:0.65:341
chr14	103597565	rs749206	G	A	2856.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr14	103599005	rs8176366	TGTGTCTGC	T	2595.73	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:198,130:0.40:328
chr14	103599938	rs2234143	C	T	5882.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr14	103602278	rs710100	A	G	2025.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr14	103802918	rs11326883	CA	C	404.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.825;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=0.882;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.155;QD=3.89;ReadPosRankSum=1.781;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:62,42:0.40:104
chr14	103804417	rs2274191	C	T	394.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:30,19:0.39:49
chr14	103805947	rs34222936	ATTG	A	1135.73	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:50,32:0.39:82
chr14	103806219	rs3783393	G	A	468.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:34,23:0.40:57
chr14	103806850	rs1804617	G	A	2389.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:77,110:0.59:187
chr14	103852607	rs12436956	G	T	1552.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:35,62:0.64:97
chr14	103852725	rs3825566	C	T	9236.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	1/1:2,355:0.99:357
chr14	103915215	rs56683493	GTGTT	G	831.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.711;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.05;ReadPosRankSum=1.576;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:45,24:0.35:69
chr14	103915225	rs58490269	GA	G	921.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.380;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.67;ReadPosRankSum=0.403;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:49,30:0.38:79
chr14	103915242	.	G	GT	54.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.188;ClippingRankSum=0.000;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.63;ReadPosRankSum=1.306;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:72,15:0.17:87
chr14	103918182	rs2273702	G	C	650.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:107,40:0.27:147
chr14	103923421	rs74866951	G	A	245.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:9,12:0.57:21
chr14	103928657	rs4906326	T	A	2168.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr14	103931879	rs1116095	A	G	2815.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:71,119:0.63:190
chr14	103932888	rs1951393	C	T	2639.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr14	103933556	rs8010247	A	G	995.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:29,46:0.61:75
chr14	103934488	rs10137161	T	C	7098.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr14	103934654	rs12892292	T	C	184.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.254;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=2.192;MLEAC=1;MLEAF=0.500;MQ=60.47;MQRankSum=-1.052;QD=8.03;ReadPosRankSum=-0.259;SOR=0.264;set=HC	GT:AD:AF:DP	0/1:10,13:0.57:23
chr14	103946636	rs8014010	A	G	1519.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr14	103964807	.	AT	A	238.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.594;ClippingRankSum=0.000;DP=91;ExcessHet=3.0103;FS=7.102;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.342;QD=2.71;ReadPosRankSum=0.585;SOR=0.229;set=HC	GT:AD:AF:DP	0/1:58,30:0.34:88
chr14	103986255	rs1803283	C	T	6298.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr14	103987078	rs2071408	G	A	2224.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:43,83:0.66:126
chr14	103987482	.	CCCT	C	43.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.905;ClippingRankSum=0.000;DP=58;ExcessHet=3.0103;FS=1.816;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=2.709;QD=0.91;ReadPosRankSum=1.316;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:42,6:0.12:48
chr14	103988180	rs1136165	G	T	1785.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr14	103995489	rs2765038	C	G	1054.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr14	103996396	rs2765037	G	A	5632.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr14	103996733	rs2756138	C	G	3090.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr14	104000802	rs11350625	AG	A	1961.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr14	104001517	rs2756119	G	A	8384.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr14	104136394	rs77849213	A	G	945.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:1,36:0.97:37
chr14	104136469	rs11333716	CT	C	4909.73	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr14	104136676	.	G	GT	164.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.062;ClippingRankSum=0.000;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.107;QD=3.83;ReadPosRankSum=0.588;SOR=1.528;set=HC	GT:AD:AF:DP	0/1:25,18:0.42:43
chr14	104139342	rs117937559	T	C	3311.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:121,154:0.56:275
chr14	104139570	rs11160757	G	T	5607.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr14	104143928	rs4906357	A	C	8340.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:1,289:1.00:290
chr14	104172877	rs3212061	C	T	2759.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr14	104174825	rs1799795	G	A	1366.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr14	104177190	.	A	AACACACAC,AACACACACAC	3239.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=92;set=Intersection	GT:AF:DP	1/2:0.54,0.44:84
chr14	104193024	rs79445108	G	A	877.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:64,46:0.42:110
chr14	104193099	rs2295151	C	G	3090.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:108,142:0.57:250
chr14	104194196	rs1535100	C	G	7638.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr14	104194278	rs1535099	C	T	1357.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:80,65:0.45:145
chr14	104195610	rs2295148	T	C	872.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:22,38:0.63:60
chr14	104199356	rs2295146	C	T	4496.77	.	AC=1;AF=0.500;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	0/1:197,221:0.53:418
chr14	104199580	rs8548	A	C	603.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:12,23:0.66:35
chr14	104202304	rs2295145	G	A	1516.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:39,56:0.59:95
chr14	104203938	rs8004408	G	A	1348.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:28,53:0.65:81
chr14	104212949	rs2295141	T	C	1027.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:26,39:0.60:65
chr14	104216293	rs2295140	C	T	3818.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:117,173:0.60:290
chr14	104251006	rs4900594	C	T	513.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:7,23:0.77:30
chr14	104251276	rs3742369	T	C	2912.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:76,127:0.63:203
chr14	104261002	.	TA	T	366.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.520;ClippingRankSum=0.000;DP=247;ExcessHet=3.0103;FS=2.047;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.57;ReadPosRankSum=-2.160;SOR=0.863;set=HC	GT:AD:AF:DP	0/1:173,61:0.26:234
chr14	104394835	rs9324065	T	C	3399.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr14	104394850	rs9324066	C	T	1683.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.698;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=0.612;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.23;ReadPosRankSum=0.443;SOR=0.803;set=HC	GT:AD:AF:DP	0/1:66,84:0.56:150
chr14	104429302	rs140667603	A	AGTGT,AGT	755.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=24;set=Intersection	GT:AF:DP	1/1:1.00:17
chr14	104429453	rs6576013	A	G	3763.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr14	104436931	rs11851097	C	T	4322.77	.	AC=1;AF=0.500;AN=2;DB;DP=355;MQ=60.03;set=Intersection	GT:AD:AF:DP	0/1:136,205:0.60:341
chr14	104441925	rs10147923	C	T	760.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:18,31:0.63:49
chr14	104452405	rs10143030	C	G	1625.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:50,74:0.60:124
chr14	104452640	rs10143389	G	A	3179.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:85,139:0.62:224
chr14	104465037	rs10133836	T	C	4415.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr14	104470686	rs28391043	G	A	1243.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:39,50:0.56:89
chr14	104470698	rs151098927	GTTTATTTATTTA	G,GTTTATTTA	1409.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=65;set=Intersection	GT:AF:DP	1/2:0.71,0.29:35
chr14	104471857	rs12147828	C	T	956.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:33,43:0.57:76
chr14	104473253	rs4900607	A	G	776.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:19,34:0.64:53
chr14	104475034	rs4906401	A	G	343.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:6,13:0.68:19
chr14	104481016	rs7150795	G	A	2537.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr14	104481083	rs11160779	T	C	4049.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:91,181:0.67:272
chr14	104481200	rs59025288	A	AT	3738.73	.	AC=1;AF=0.500;AN=2;DB;DP=363;MQ=60.09;set=Intersection	GT:AD:AF:DP	0/1:134,202:0.60:336
chr14	104484346	rs34317359	G	A	263.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:11,12:0.52:23
chr14	104484646	rs12589669	T	C	833.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:79,47:0.37:126
chr14	104491086	rs72042212	TACACACACACAC	T	745.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.355;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=0.000;QD=29.83;ReadPosRankSum=-0.619;SOR=1.101;set=HC	GT:AD:AF:DP	0/1:6,19:0.76:25
chr14	104497543	rs10135507	C	T	3374.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:114,159:0.58:273
chr14	104498472	rs4906405	G	A	1277.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr14	104498530	.	ATCTTT	A	190	.	AC=1;AF=0.500;AN=2;BRF=0.21;FR=0.5000;HP=3;HapScore=2;MGOF=28;MMLQ=23;MQ=60.34;NF=0;NR=5;PP=190;QD=40.2;SC=GGAATGTGTTATCTTTTCTTT;SbPval=1.0;Source=Platypus;TC=15;TCF=0;TCR=15;TR=5;WE=104498542;WS=104498520;set=Platypus	GT:AD:AF:DP	0/1:10,5:0.33:15
chr14	104500427	rs10150865	A	G	8112.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr14	104500530	rs10151066	C	T	683.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.32;SOR=1.101;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr14	104501551	rs3830999	AT	A	508.73	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:21,19:0.47:40
chr14	104518453	rs7150461	A	G	1034.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:65,47:0.42:112
chr14	104569801	rs8012482	C	G	422.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr14	104570904	rs1744299	T	C	5036.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:1,190:0.99:191
chr14	104571054	rs8012505	C	G	2639.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr14	104571820	rs2282377	C	G	5132.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.13;SOR=3.395;set=HC	GT:AD:AF:DP	1/1:0,119:1.00:119
chr14	104571826	rs1744300	A	G	4990.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.79;SOR=3.892;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr14	104573690	rs1744301	A	G	3861.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr14	104575466	rs1771012	C	T	2638.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr14	104640011	rs2275593	T	C	463.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:36,22:0.38:58
chr14	104640481	rs2254205	G	C	3813.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:109,172:0.61:281
chr14	104641612	rs4906422	T	C	6925.73	.	AC=1;AF=0.500;AN=2;DB;DP=991;set=Intersection	GT:AD:AF:DP	0/1:606,366:0.38:972
chr14	104641792	rs2487305	C	T	4224.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:124,184:0.60:308
chr14	104642341	rs2487304	A	G	15760.77	.	AC=2;AF=1.00;AN=2;DB;DP=593;set=Intersection	GT:AD:AF:DP	1/1:0,589:1.00:589
chr14	104642422	rs3742947	A	G	3026.77	.	AC=1;AF=0.500;AN=2;DB;DP=504;set=Intersection	GT:AD:AF:DP	0/1:326,174:0.35:500
chr14	104643409	rs2487303	A	G	7929.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr14	104643421	rs2487302	T	C	4379.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:106,201:0.65:307
chr14	104643721	rs2487301	C	A	2365.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:69,103:0.60:172
chr14	104643859	rs2487300	A	G	1441.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:18,55:0.75:73
chr14	104644147	rs11621644	C	T	1129.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:116,61:0.34:177
chr14	104647224	rs884996	C	T	670.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr14	104710505	rs7142555	T	G	1303.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr14	104710651	rs7141507	C	T	1918.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:85,90:0.51:175
chr14	104940930	rs28453989	C	T	11340.77	.	AC=2;AF=1.00;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	1/1:0,419:1.00:419
chr14	104940967	rs28699424	G	A	3786.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:150,178:0.54:328
chr14	104941016	rs28715110	G	A	2615.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:80,114:0.59:194
chr14	105052640	rs35246301	A	G	709.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:7,26:0.79:33
chr14	105054260	rs9788527	A	G	2434.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:65,102:0.61:167
chr14	105054709	rs9788432	T	A	3785.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:82,181:0.69:263
chr14	105054934	rs12880814	A	G	923.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:20,42:0.68:62
chr14	105055118	rs111285011	TGACGGGCAG	T	2575.73	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:33,66:0.67:99
chr14	105055171	.	CG	C	2100	.	AC=1;AF=0.500;AN=2;BRF=0.48;FR=0.5000;HP=5;HapScore=2;MGOF=83;MMLQ=24;MQ=60.0;NF=6;NR=18;PP=2100;QD=88.5833333333;SC=TCAAGCACTCCGGGGGCTCCG;SbPval=0.69;Source=Platypus;TC=63;TCF=18;TCR=45;TR=24;WE=105055179;WS=105055161;set=Platypus	GT:AD:AF:DP	1/0:39,24:0.38:63
chr14	105055304	rs11160811	A	G	436.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:36,22:0.38:58
chr14	105057948	rs3803317	C	T	1705.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:61,83:0.58:144
chr14	105059573	rs28656783	C	T	1190.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:36,54:0.60:90
chr14	105060024	rs12879330	A	G	2177.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.545;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=5.349;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.30;ReadPosRankSum=-1.455;SOR=0.319;set=HC	GT:AD:AF:DP	0/1:59,60:0.50:119
chr14	105060029	rs12880651	T	C	2077.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.526;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=5.628;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.06;ReadPosRankSum=-1.131;SOR=0.318;set=HC	GT:AD:AF:DP	0/1:55,54:0.50:109
chr14	105063253	rs11629201	C	T	516.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:30,23:0.43:53
chr14	105070791	rs3803313	G	T	599.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:43,29:0.40:72
chr14	105150273	rs7153053	C	T	2627.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:58,115:0.66:173
chr14	105167807	rs4983530	C	T	5077.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr14	105175141	.	C	T	1010.77	.	AC=1;AF=0.500;AN=2;DP=67;set=Intersection	GT:AD:AF:DP	0/1:22,45:0.67:67
chr14	105177351	rs3840006	CA	C	14559.73	.	AC=2;AF=1.00;AN=2;DB;DP=392;MQ=60.39;set=Intersection	GT:AD:AF:DP	1/1:0,376:1.00:376
chr14	105178089	rs4983531	T	C	2888.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.48;SOR=1.644;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr14	105178098	rs4983532	G	C	2630.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.85;SOR=1.942;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr14	105179043	rs4497619	G	C	2068.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr14	105179081	rs10144190	G	A	2490.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr14	105179194	rs10133301	T	C	6433.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr14	105180484	rs9672043	C	T	3123.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr14	105180565	rs4983535	T	C	7047.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr14	105180706	rs1128840	A	C	12141.77	.	AC=2;AF=1.00;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	1/1:2,455:1.00:457
chr14	105196230	rs80097179	A	C	3675.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.85;QD=45.38;SOR=1.124;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr14	105196235	rs34672588	G	A	3790.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.59;SOR=0.965;set=HC	GT:AD:AF:DP	1/1:0,89:1.00:89
chr14	105196365	rs33958252	T	C	6294.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:2,237:0.99:239
chr14	105201596	rs7149183	T	C	1229.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr14	105207134	rs3803307	A	G	8586.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chr14	105207642	rs45463395	C	T	3133.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr14	105208037	rs4983539	A	C	2985.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr14	105208057	rs4983384	C	T	3249.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:1,112:0.99:113
chr14	105211426	rs7155192	G	A	982.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.08;SOR=3.321;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr14	105213343	rs6644	A	G	7072.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr14	105219467	rs3809453	A	G	1545.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:1,59:0.98:60
chr14	105219976	rs12889167	T	C	5188.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr14	105220210	rs7151424	G	A	4633.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:2,170:0.99:172
chr14	105221996	rs141296448	G	A	1261.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:82,64:0.44:146
chr14	105222037	rs1132975	C	T	5680.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:2,212:0.99:214
chr14	105223194	rs34992074	C	CAT	4178.73	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr14	105223525	rs12590163	T	C	2009.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr14	105233095	rs2498804	C	A	5419.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr14	105238591	rs55839843	CCTGAG	C	3145.73	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr14	105238604	rs2498800	C	T	3280.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr14	105238636	rs17846832	G	C	4196.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:1,152:0.99:153
chr14	105239192	rs2494732	T	C	1130.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr14	105242228	rs2498797	T	C	4802.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr14	105242831	rs3001371	C	T	1429.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:1,53:0.98:54
chr14	105242966	rs2494735	T	C	8584.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:2,322:0.99:324
chr14	105246325	rs2494737	T	A	2548.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr14	105246686	rs2494738	G	A	426.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:25,21:0.46:46
chr14	105246692	rs12588965	T	A	518.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:19,22:0.54:41
chr14	105258892	rs2494748	C	T	9450.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.733;ClippingRankSum=0.000;DB;DP=646;ExcessHet=3.0103;FS=1.181;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.81;ReadPosRankSum=-0.503;SOR=0.794;set=HC	GT:AD:AF:DP	0/1:219,419:0.66:638
chr14	105258892	.	CA	TG	2944	.	AC=1;AF=0.500;AN=2;BRF=0.53;FR=0.5000;HP=4;HapScore=1;MGOF=2;MMLQ=27;MQ=60.0;NF=159;NR=104;PP=2944;QD=20;SC=CTACTACCCCCATCTCTCCCT;SbPval=0.57;Source=Platypus;TC=414;TCF=247;TCR=167;TR=263;WE=105258901;WS=105258882;set=Platypus	GT:AD:AF:DP	0/1:151,263:0.64:414
chr14	105258893	rs2494749	A	G	24970.77	.	AC=2;AF=1.00;AN=2;DB;DP=663;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.12;SOR=1.058;set=HC	GT:AD:AF:DP	1/1:0,655:1.00:655
chr14	105267579	rs12878684	A	G	5490.77	.	AC=1;AF=0.500;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	0/1:137,242:0.64:379
chr14	105268228	rs4983387	G	A	3739.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:127,167:0.57:294
chr14	105309252	rs12895703	T	C	1493.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.103;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=1.687;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.96;ReadPosRankSum=-2.446;SOR=0.477;set=HC	GT:AD:AF:DP	0/1:66,41:0.38:107
chr14	105309256	rs12894371	A	T	1556.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.501;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=1.569;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.19;ReadPosRankSum=-1.980;SOR=0.523;set=HC	GT:AD:AF:DP	0/1:73,45:0.38:118
chr14	105309608	rs12878750	C	T	610.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:39,27:0.41:66
chr14	105335049	rs12431850	C	T	173.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chr14	105344111	rs78118267	G	A	123.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:3,7:0.70:10
chr14	105344157	rs75824199	G	A	257.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.588;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.72;ReadPosRankSum=0.952;SOR=1.721;set=HC	GT:AD:AF:DP	0/1:7,15:0.68:22
chr14	105344182	rs2304759	C	T	103.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.426;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.71;ReadPosRankSum=-0.120;SOR=0.289;set=HC	GT:AD:AF:DP	0/1:18,10:0.36:28
chr14	105344188	rs370824172	TCCCC	T	747.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.352;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=3.003;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.99;ReadPosRankSum=0.387;SOR=0.164;set=HC	GT:AD:AF:DP	0/1:14,20:0.59:34
chr14	105344293	rs61995995	C	T	6814.77	.	AC=1;AF=0.500;AN=2;DB;DP=600;set=Intersection	GT:AD:AF:DP	0/1:389,198:0.34:587
chr14	105344318	rs2304758	G	A	7023.77	.	AC=1;AF=0.500;AN=2;DB;DP=630;set=Intersection	GT:AD:AF:DP	0/1:406,214:0.35:620
chr14	105344347	rs2304757	C	G	3269.77	.	AC=1;AF=0.500;AN=2;DB;DP=568;set=Intersection	GT:AD:AF:DP	0/1:367,191:0.34:558
chr14	105344419	rs34009344	A	G	1398.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:142,71:0.33:213
chr14	105344603	rs41310934	C	T	334.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:46,18:0.28:64
chr14	105344761	rs41317300	C	T	3184.77	.	AC=1;AF=0.500;AN=2;DB;DP=488;set=Intersection	GT:AD:AF:DP	0/1:307,174:0.36:481
chr14	105344872	rs61995998	C	T	1500.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:127,79:0.38:206
chr14	105349220	rs2028415	T	G	1178.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:68,54:0.44:122
chr14	105349388	rs2028414	A	C	2486.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:204,127:0.38:331
chr14	105349877	rs10145119	C	T	1804.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.600;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.69;ReadPosRankSum=3.814;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:54,48:0.47:102
chr14	105349886	rs10145122	C	T	1876.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.454;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=1.963;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.33;ReadPosRankSum=0.922;SOR=0.450;set=HC	GT:AD:AF:DP	0/1:40,48:0.55:88
chr14	105349891	rs10145270	G	A	1701.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.714;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=3.453;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.27;ReadPosRankSum=0.780;SOR=0.345;set=HC	GT:AD:AF:DP	0/1:36,44:0.55:80
chr14	105349897	rs10145031	A	G	1719.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.689;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=2.103;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.56;ReadPosRankSum=-0.723;SOR=0.478;set=HC	GT:AD:AF:DP	0/1:30,43:0.59:73
chr14	105350235	rs2582555	T	C	4540.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:104,190:0.65:294
chr14	105350355	rs2841236	A	G	3126.77	.	AC=1;AF=0.500;AN=2;DB;DP=648;set=Intersection	GT:AD:AF:DP	0/1:452,188:0.29:640
chr14	105350799	rs9788593	C	T	1588.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:188,96:0.34:284
chr14	105350868	rs9788594	C	T	1551.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:155,84:0.35:239
chr14	105351637	rs2582549	A	G	722.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:59,39:0.40:98
chr14	105351673	rs894038	C	T	1277.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:99,67:0.40:166
chr14	105352255	rs2251389	T	A	1378.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:213,81:0.28:294
chr14	105354293	rs2582548	A	G	1890.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:139,99:0.42:238
chr14	105356137	rs2919629	G	C	2407.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:203,117:0.37:320
chr14	105359306	rs3742939	G	C	1225.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:126,64:0.34:190
chr14	105359827	rs2247712	T	C	1666.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:130,80:0.38:210
chr14	105360746	rs2841244	T	C	2236.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:134,108:0.45:242
chr14	105363157	rs7152667	A	G	470.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.480;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=2.346;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.24;ReadPosRankSum=-0.844;SOR=0.380;set=HC	GT:AD:AF:DP	0/1:40,25:0.38:65
chr14	105363202	rs10147348	A	G	358.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:24,18:0.43:42
chr14	105393707	rs879448	C	T	1703.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr14	105398787	rs2582533	G	C	1664.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr14	105404384	rs1048257	T	C	3430.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr14	105405599	rs3742935	G	C	6719.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr14	105405942	rs28454709	G	A	8443.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:1,300:1.00:301
chr14	105406238	rs2819419	A	C	12470.77	.	AC=2;AF=1.00;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	1/1:1,451:1.00:452
chr14	105406372	rs61421370	C	T	8951.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr14	105407031	rs11623422	A	G	9744.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	1/1:0,351:1.00:351
chr14	105407208	rs11851053	T	C	8457.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chr14	105407798	rs4465542	T	C	11459.77	.	AC=2;AF=1.00;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	1/1:2,433:1.00:435
chr14	105408182	rs9672139	T	G	6892.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr14	105408315	rs28600075	T	C	14595.77	.	AC=2;AF=1.00;AN=2;DB;DP=540;set=Intersection	GT:AD:AF:DP	1/1:0,533:1.00:533
chr14	105408811	rs2819421	A	G	15663.77	.	AC=2;AF=1.00;AN=2;DB;DP=590;set=Intersection	GT:AD:AF:DP	1/1:0,582:1.00:582
chr14	105408955	rs2819422	A	G	14362.77	.	AC=2;AF=1.00;AN=2;DB;DP=536;set=Intersection	GT:AD:AF:DP	1/1:2,530:1.00:532
chr14	105409907	rs10141053	T	C	15222.77	.	AC=2;AF=1.00;AN=2;DB;DP=594;set=Intersection	GT:AD:AF:DP	1/1:4,577:0.99:581
chr14	105410183	rs10438246	T	C	6967.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr14	105410411	rs11160825	C	T	15549.77	.	AC=2;AF=1.00;AN=2;DB;DP=575;set=Intersection	GT:AD:AF:DP	1/1:0,565:1.00:565
chr14	105410775	rs2819424	A	G	14159.77	.	AC=2;AF=1.00;AN=2;DB;DP=534;set=Intersection	GT:AD:AF:DP	1/1:0,533:1.00:533
chr14	105410827	rs28380382	C	T	16292.77	.	AC=2;AF=1.00;AN=2;DB;DP=580;set=Intersection	GT:AD:AF:DP	1/1:0,576:1.00:576
chr14	105411153	rs34499888	G	A	9846.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:0,356:1.00:356
chr14	105411700	rs4264326	A	G	12563.77	.	AC=2;AF=1.00;AN=2;DB;DP=465;set=Intersection	GT:AD:AF:DP	1/1:0,462:1.00:462
chr14	105411781	rs10438247	G	A	15997.77	.	AC=2;AF=1.00;AN=2;DB;DP=576;set=Intersection	GT:AD:AF:DP	1/1:0,572:1.00:572
chr14	105411957	rs373797895	G	A	6234.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:1,155:0.99:156
chr14	105411971	rs28737397	T	C	5433.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:1,119:0.99:120
chr14	105412005	rs28564728	A	G	2385.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.849;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=6.337;MLEAC=2;MLEAF=1.000;MQ=42.47;MQRankSum=-2.700;QD=41.86;ReadPosRankSum=1.542;SOR=3.952;set=HC	GT:AD:AF:DP	1/1:2,55:0.96:57
chr14	105412009	rs28714612	A	G	2385.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.874;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=6.408;MLEAC=2;MLEAF=1.000;MQ=42.63;MQRankSum=-2.679;QD=41.13;ReadPosRankSum=1.643;SOR=3.990;set=HC	GT:AD:AF:DP	1/1:2,56:0.97:58
chr14	105412066	rs77154428	C	T	1909.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:1,66:0.99:67
chr14	105412138	rs200384326	A	G	179.41	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.593;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.53;MQRankSum=-0.967;QD=19.93;ReadPosRankSum=0.282;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:1,8:0.89:9
chr14	105412347	.	C	T	1345	.	AC=2;AF=1.00;AN=2;BRF=0.65;FR=1.0000;HP=2;HapScore=1;MGOF=8;MMLQ=28;MQ=43.58;NF=54;NR=5;PP=1345;QD=23.385952755;SC=GCATCTTGAACTTGGGCATTT;SbPval=0.54;Source=Platypus;TC=60;TCF=55;TCR=5;TR=59;WE=105412355;WS=105412337;set=Platypus	GT:AD:AF:DP	1/1:1,59:0.98:60
chr14	105412541	rs12433837	CA	TG	7457.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr14	105412554	rs12436986	T	G	5924.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.17;QD=48.97;SOR=1.236;set=HC	GT:AD:AF:DP	1/1:0,121:1.00:121
chr14	105412561	rs3000771	C	T	5427.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.39;QD=43.08;SOR=1.057;set=HC	GT:AD:AF:DP	1/1:0,126:1.00:126
chr14	105413204	rs2582514	G	T	17143.77	.	AC=2;AF=1.00;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	1/1:0,391:1.00:391
chr14	105413223	rs55797226	A	G	18361.77	.	AC=2;AF=1.00;AN=2;DB;DP=448;set=Intersection	GT:AD:AF:DP	1/1:0,443:1.00:443
chr14	105413790	rs11848564	G	A	18974.77	.	AC=2;AF=1.00;AN=2;DB;DP=715;set=Intersection	GT:AD:AF:DP	1/1:1,709:1.00:710
chr14	105414238	rs60754080	C	A	19557.77	.	AC=2;AF=1.00;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	1/1:0,439:1.00:439
chr14	105414252	rs60106058	C	T	21043.77	.	AC=2;AF=1.00;AN=2;DB;DP=505;set=Intersection	GT:AD:AF:DP	1/1:0,504:1.00:504
chr14	105414280	rs2819429	T	G	16867.77	.	AC=2;AF=1.00;AN=2;DB;DP=633;set=Intersection	GT:AD:AF:DP	1/1:0,629:1.00:629
chr14	105414629	rs72702027	G	A	8548.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr14	105414790	rs2582513	A	G	15908.77	.	AC=2;AF=1.00;AN=2;DB;DP=578;set=Intersection	GT:AD:AF:DP	1/1:0,568:1.00:568
chr14	105414810	rs10145032	C	G	16120.77	.	AC=2;AF=1.00;AN=2;DB;DP=584;set=Intersection	GT:AD:AF:DP	1/1:0,570:1.00:570
chr14	105415200	rs10145566	G	C	6503.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr14	105415229	rs10134675	T	C	4790.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr14	105415279	rs201127689	T	C	1986.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.13;QD=42.27;SOR=3.033;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr14	105415281	rs146449084	G	C	1986.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.27;QD=48.46;SOR=3.312;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr14	105415290	.	A	C	1456.77	.	AC=2;AF=1.00;AN=2;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.70;QD=53.95;SOR=5.211;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr14	105415293	rs57414669	C	T	871.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=38.92;QD=45.88;SOR=5.994;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr14	105415299	rs59107644	A	G	736.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=38.19;QD=49.12;SOR=5.549;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr14	105415745	rs117379881	C	G	13785.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.51;QD=45.35;SOR=1.094;set=HC	GT:AD:AF:DP	1/1:0,304:1.00:304
chr14	105415748	rs118171013	G	A	13874.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.56;QD=44.05;SOR=1.087;set=HC	GT:AD:AF:DP	1/1:0,315:1.00:315
chr14	105416010	rs2582511	T	C	9451.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chr14	105416220	rs2819435	T	A	15633.77	.	AC=2;AF=1.00;AN=2;DB;DP=601;set=Intersection	GT:AD:AF:DP	1/1:1,577:1.00:578
chr14	105417222	rs2013274	C	T	10922.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.982;ClippingRankSum=0.000;DB;DP=256;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.76;MQRankSum=-1.988;QD=43.34;ReadPosRankSum=0.599;SOR=1.498;set=HC	GT:AD:AF:DP	1/1:2,250:0.99:252
chr14	105417225	rs2894635	C	G	10755.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.052;ClippingRankSum=0.000;DB;DP=246;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.31;MQRankSum=-2.058;QD=44.45;ReadPosRankSum=0.452;SOR=1.570;set=HC	GT:AD:AF:DP	1/1:2,240:0.99:242
chr14	105417228	rs2248960	C	T	10566.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.165;ClippingRankSum=0.000;DB;DP=237;ExcessHet=3.0103;FS=2.621;MLEAC=2;MLEAF=1.000;MQ=47.87;MQRankSum=-2.126;QD=45.35;ReadPosRankSum=0.242;SOR=1.662;set=HC	GT:AD:AF:DP	1/1:2,231:0.99:233
chr14	105417243	rs77111827	T	C	4918.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:2,186:0.99:188
chr14	105417285	rs76453246	C	T	2088.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.887;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=6.013;MLEAC=2;MLEAF=1.000;MQ=43.02;MQRankSum=-2.425;QD=27.85;ReadPosRankSum=-0.016;SOR=3.767;set=HC	GT:AD:AF:DP	1/1:2,73:0.97:75
chr14	105417313	rs80275639	T	C	249.22	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.282;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=41.01;MQRankSum=-1.645;QD=24.92;ReadPosRankSum=-1.645;SOR=3.258;set=HC	GT:AD:AF:DP	0/1:1,9:0.90:10
chr14	105418149	rs147978925	A	T	4275.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.18;QD=46.48;SOR=5.376;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr14	105418155	rs141600524	G	C	4963.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.47;QD=46.39;SOR=5.363;set=HC	GT:AD:AF:DP	1/1:0,107:1.00:107
chr14	105418166	rs78116894	T	C	6495.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr14	105418194	rs78447535	A	G	8622.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chr14	105418643	rs201734069	G	C	3035.77	.	AC=1;AF=0.500;AN=2;DB;DP=510;set=Intersection	GT:AD:AF:DP	0/1:337,163:0.33:500
chr14	105420927	rs879210	A	G	10963.77	.	AC=2;AF=1.00;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	1/1:0,401:1.00:401
chr14	105421050	rs879209	T	G	7281.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr14	105421236	rs66540327	CAGCCAGCAGGGTAGTGA	C	3073.73	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr14	105423891	rs149134261	G	A	4339.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:82,188:0.70:270
chr14	105452035	rs10150682	A	G	641.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr14	105457771	rs2247140	A	G	3354.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr14	105461067	rs894039	C	T	4572.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr14	105478102	rs3803294	G	A	18641.77	.	AC=2;AF=1.00;AN=2;DB;DP=708;set=Intersection	GT:AD:AF:DP	1/1:2,697:1.00:699
chr14	105523663	rs7147439	G	A	2484.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr14	105609335	rs10149229	A	G	10462.77	.	AC=2;AF=1.00;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	1/1:0,398:1.00:398
chr14	105611282	rs2272591	A	G	7993.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:1,304:1.00:305
chr14	105614032	rs2242636	C	G	1762.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr14	105615026	rs2242634	A	G	1192.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr14	105617042	rs1057744	C	T	9288.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chr14	105617550	rs3830678	C	CGCAGCCCCA	6145.73	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr14	105618670	rs2238287	T	C	4052.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr14	105622056	rs2816679	A	G	17428.77	.	AC=2;AF=1.00;AN=2;DB;DP=642;MQ=59.98;set=Intersection	GT:AD:AF:DP	1/1:0,624:1.00:624
chr14	105634663	.	ACCCCCGCCG	A	207	.	AC=1;AF=0.500;AN=2;BRF=0.67;FR=0.5000;HP=5;HapScore=1;MGOF=6;MMLQ=24;MQ=60.0;NF=0;NR=1;PP=207;QD=224.0;SC=CCCGTCCGCGACCCCCGCCGC;SbPval=1.0;Source=Platypus;TC=8;TCF=0;TCR=8;TR=1;WE=105634679;WS=105634653;set=Platypus	GT:AD:AF:DP	0/1:7,1:0.12:8
chr14	105643619	rs10139596	G	A	3138.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr14	105643652	rs10139450	A	C	1648.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr14	105644151	rs1882848	T	C	2527.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr14	105647562	rs67388067	GGCGGGGGCCGCGAGCTCT	G	586.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.91;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr14	105676048	rs3087836	G	C	1793.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr14	105686570	rs8005486	T	C	5408.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr14	105688082	rs28406206	C	T	639.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:44,31:0.41:75
chr14	105692697	rs12883636	G	C	4597.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr14	105695262	rs118003663	C	T	5990.77	.	AC=1;AF=0.500;AN=2;DB;DP=470;set=Intersection	GT:AD:AF:DP	0/1:189,272:0.59:461
chr14	105695364	rs77453682	C	T	823.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:50,36:0.42:86
chr14	105858840	.	G	A	1589.77	.	AC=1;AF=0.500;AN=2;DP=116;set=Intersection	GT:AD:AF:DP	0/1:44,70:0.61:114
chr14	105905126	rs4983620	C	T	2380.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.45;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr14	105911639	rs6576102	G	A	4659.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr14	105916420	rs4983409	C	T	16505.77	.	AC=2;AF=1.00;AN=2;DB;DP=615;set=Intersection	GT:AD:AF:DP	1/1:0,607:1.00:607
chr14	105924538	rs7492915	G	A	2000.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr14	105924786	rs4074001	G	A	4848.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr14	105929443	rs7143366	C	T	5806.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr14	105930406	rs4983413	G	A	7336.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.502;ClippingRankSum=0.000;DB;DP=639;ExcessHet=3.0103;FS=0.526;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.52;ReadPosRankSum=-0.811;SOR=0.785;set=HC	GT:AD:AF:DP	0/1:273,364:0.57:637
chr14	105930923	rs11845995	G	A	7627.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr14	105931585	rs4983339	A	G	1420.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr14	105935721	rs10150545	A	G	4172.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr14	105935824	rs13707	G	A	10197.77	.	AC=2;AF=1.00;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	1/1:0,378:1.00:378
chr14	105936064	rs10150915	A	G	2903.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr14	105936100	rs144496498	A	ACCTTGGCTGGTGGCC	6511.73	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr14	105944781	.	G	A	3343.77	.	AC=1;AF=0.500;AN=2;DP=559;set=Intersection	GT:AD:AF:DP	0/1:369,189:0.34:558
chr14	105945891	rs11849001	C	T	18749.77	.	AC=2;AF=1.00;AN=2;DB;DP=712;set=Intersection	GT:AD:AF:DP	1/1:0,703:1.00:703
chr14	105953474	rs7160858	G	T	397.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr14	105953595	rs7140395	T	C	2016.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr14	105954705	rs55633823	C	T	2637.77	.	AC=1;AF=0.500;AN=2;DB;DP=480;set=Intersection	GT:AD:AF:DP	0/1:318,153:0.32:471
chr14	105960319	rs61641418	A	G	319.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.666;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.83;ReadPosRankSum=1.236;SOR=2.948;set=HC	GT:AD:AF:DP	0/1:3,16:0.84:19
chr14	105962234	rs7494350	T	C	5652.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr14	105962369	rs7494717	A	G	5985.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr14	105963944	rs4983426	CT	TC	1218.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;JOINED;set=Intersection	GT:AD:AF:DP	0/1:32,32:0.50:64
chr14	105996049	rs10569304	TGCC	T	3503.73	.	AC=1;AF=0.500;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	0/1:156,98:0.39:254
chr14	106054428	rs9972103	C	G	3200.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.98;QD=32.66;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,98:1.00:98
chr14	106054456	rs61984162	A	G	4842.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr14	106054748	rs74519992	G	A	60.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.817;ClippingRankSum=0.000;DB;DP=1172;ExcessHet=3.0103;FS=1.842;MLEAC=1;MLEAF=0.500;MQ=59.68;MQRankSum=-10.289;QD=0.05;ReadPosRankSum=4.166;SOR=0.494;set=HC	GT:AD:AF:DP	0/1:1027,132:0.11:1159
chr14	106054791	rs73357622	G	T	3410.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.902;ClippingRankSum=0.000;DB;DP=679;ExcessHet=3.0103;FS=5.984;MLEAC=1;MLEAF=0.500;MQ=59.47;MQRankSum=-11.157;QD=5.06;ReadPosRankSum=6.070;SOR=0.338;set=HC	GT:AD:AF:DP	0/1:550,124:0.18:674
chr14	106054796	rs74091253	A	G	3478.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.262;ClippingRankSum=0.000;DB;DP=622;ExcessHet=3.0103;FS=7.071;MLEAC=1;MLEAF=0.500;MQ=59.42;MQRankSum=-10.745;QD=5.64;ReadPosRankSum=5.175;SOR=0.315;set=HC	GT:AD:AF:DP	0/1:496,121:0.20:617
chr14	106054812	rs111444508	C	T	1412.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.293;ClippingRankSum=0.000;DB;DP=468;ExcessHet=3.0103;FS=11.555;MLEAC=1;MLEAF=0.500;MQ=59.62;MQRankSum=-7.913;QD=3.04;ReadPosRankSum=2.852;SOR=0.247;set=HC	GT:AD:AF:DP	0/1:363,102:0.22:465
chr14	106054854	.	A	T	1381.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.533;ClippingRankSum=0.000;DP=210;ExcessHet=3.0103;FS=27.010;MLEAC=1;MLEAF=0.500;MQ=59.45;MQRankSum=-5.581;QD=6.64;ReadPosRankSum=-2.872;SOR=0.093;set=HC	GT:AD:AF:DP	0/1:160,48:0.23:208
chr14	106054858	.	T	C	1243.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.146;ClippingRankSum=0.000;DP=191;ExcessHet=3.0103;FS=26.158;MLEAC=1;MLEAF=0.500;MQ=59.40;MQRankSum=-5.911;QD=6.58;ReadPosRankSum=-2.474;SOR=0.074;set=HC	GT:AD:AF:DP	0/1:149,40:0.21:189
chr14	106066454	rs4983454	T	C	6698.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr14	106067618	rs12884681	G	A	5025.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr14	106091329	rs8015545	G	C	913.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:83,49:0.37:132
chr14	106091504	rs1042306	A	G	1220.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:146,65:0.31:211
chr14	106091555	rs35035896	C	T	1113.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:162,65:0.29:227
chr14	106091697	rs56210451	T	C	1994.77	.	AC=1;AF=0.500;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	0/1:288,121:0.30:409
chr14	106091743	rs35171885	CA	C	3617.73	.	AC=1;AF=0.500;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	0/1:240,119:0.33:359
chr14	106110137	rs8009156	C	T	1165.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:46,52:0.53:98
chr14	106110330	rs8014709	T	C	6688.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr14	106173808	rs371291470	G	A	5050.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=6.487;MLEAC=2;MLEAF=1.000;MQ=43.89;MQRankSum=-2.165;QD=30.06;ReadPosRankSum=-1.004;SOR=4.021;set=HC	GT:AD:AF:DP	1/1:2,166:0.99:168
chr14	106173971	rs10220590	T	C	870.78	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.505;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=21.928;MLEAC=2;MLEAF=1.000;MQ=43.32;MQRankSum=1.620;QD=26.39;ReadPosRankSum=0.038;SOR=3.375;set=HC	GT:AD:AF:DP	1/1:3,30:0.91:33
chr14	106174261	rs1407	C	G	2619.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr14	106174518	rs12433324	A	G	1467.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr14	106174654	.	C	G	811.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.566;ClippingRankSum=0.000;DP=100;ExcessHet=3.0103;FS=3.719;MLEAC=1;MLEAF=0.500;MQ=53.80;MQRankSum=-7.973;QD=8.20;ReadPosRankSum=-2.001;SOR=0.416;set=HC	GT:AD:AF:DP	0/1:53,46:0.46:99
chr14	106175037	rs58621233	C	CATGCCATG	3709.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.965;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.78;MQRankSum=-0.626;QD=43.14;ReadPosRankSum=1.512;SOR=2.560;set=HC	GT:AD:AF:DP	1/1:1,85:0.99:86
chr14	106175040	rs59809572	C	CCCAGGAGGACAG	3394.73	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.25;QD=47.15;SOR=3.737;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr14	106175044	rs57258431	A	G	2401.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.62;QD=49.02;SOR=3.398;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr14	106175045	.	T	TG	2302.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.04;QD=50.06;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr14	106175046	.	A	C	2176.77	.	AC=2;AF=1.00;ALERT;AN=2;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.83;QD=48.37;SOR=3.209;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr14	106188045	rs11624491	C	T	398.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.757;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.18;ReadPosRankSum=-0.135;SOR=0.814;set=HC	GT:AD:AF:DP	0/1:55,22:0.29:77
chr14	106188230	rs1134590	C	T	723.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:163,50:0.23:213
chr14	106188309	rs11624581	C	T	659.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:96,37:0.28:133
chr14	106208082	rs11621259	G	T	583.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.108;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=9.634;MLEAC=1;MLEAF=0.500;MQ=52.91;MQRankSum=-5.290;QD=16.68;ReadPosRankSum=1.328;SOR=3.375;set=HC	GT:AD:AF:DP	0/1:19,16:0.46:35
chr14	106208086	rs1045853	A	C	574.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.926;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=11.803;MLEAC=1;MLEAF=0.500;MQ=53.68;MQRankSum=-5.670;QD=14.74;ReadPosRankSum=2.482;SOR=3.395;set=HC	GT:AD:AF:DP	0/1:23,16:0.41:39
chr14	106209340	rs11552998	T	C	1726.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr14	106235485	rs112228168	T	C	190.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.149;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.24;MQRankSum=-0.839;QD=5.45;ReadPosRankSum=-1.698;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:29,6:0.17:35
chr14	106235489	rs15979	C	T	240.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:26,12:0.32:38
chr14	106235504	rs8082	C	G	244.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:33,11:0.25:44
chr14	106235528	rs368273969	C	T	416.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.427;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.71;MQRankSum=-2.792;QD=7.19;ReadPosRankSum=1.726;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:45,13:0.22:58
chr14	106235535	rs371721170	C	G	457.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.461;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.12;MQRankSum=-3.293;QD=6.73;ReadPosRankSum=0.536;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:50,18:0.26:68
chr14	106235567	rs139488657	G	A	1455.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.766;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=3.987;MLEAC=1;MLEAF=0.500;MQ=53.06;MQRankSum=-3.166;QD=16.54;ReadPosRankSum=0.017;SOR=0.885;set=HC	GT:AD:AF:DP	0/1:49,39:0.44:88
chr14	106235567	.	GTC	ATG	899	.	AC=1;AF=0.500;AN=2;BRF=0.57;FR=0.5000;HP=2;HapScore=2;MGOF=39;MMLQ=24;MQ=47.05;NF=15;NR=12;PP=899;QD=35.2765879579;SC=CTTGCCGGCCGTCGCACTCAT;SbPval=0.35;Source=Platypus;TC=60;TCF=29;TCR=31;TR=27;WE=106235577;WS=106235557;set=Platypus	GT:AD:AF:DP	1/0:33,27:0.45:60
chr14	106235569	rs4042058	C	G	1455.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.702;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=2.800;MLEAC=1;MLEAF=0.500;MQ=53.28;MQRankSum=-3.091;QD=16.36;ReadPosRankSum=0.058;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:49,40:0.45:89
chr14	106235611	rs1051112	A	T	1638.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.835;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.927;MLEAC=1;MLEAF=0.500;MQ=54.27;MQRankSum=-5.062;QD=19.06;ReadPosRankSum=-0.479;SOR=0.505;set=HC	GT:AD:AF:DP	0/1:23,63:0.73:86
chr14	106235614	rs4042056	C	T	38.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.861;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=1.172;MLEAC=1;MLEAF=0.500;MQ=54.35;MQRankSum=-4.616;QD=0.46;ReadPosRankSum=-2.464;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:71,13:0.15:84
chr14	106236035	rs201027762	G	C	485.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:60,27:0.31:87
chr14	106236128	rs12890621	T	A	415.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:23,18:0.44:41
chr14	106236143	rs74093865	G	A	535.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:18,21:0.54:39
chr14	106236451	rs12895160	T	G	2623.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.175;ClippingRankSum=0.000;DB;DP=228;ExcessHet=3.0103;FS=0.505;MLEAC=1;MLEAF=0.500;MQ=55.79;MQRankSum=2.100;QD=11.51;ReadPosRankSum=0.451;SOR=0.742;set=HC	GT:AD:AF:DP	0/1:147,81:0.36:228
chr14	106236458	rs11628528	C	T	2526.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.592;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=1.123;MLEAC=1;MLEAF=0.500;MQ=55.05;MQRankSum=2.351;QD=11.86;ReadPosRankSum=-1.310;SOR=0.796;set=HC	GT:AD:AF:DP	0/1:140,73:0.34:213
chr14	106237105	rs2753552	A	G	5940.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr14	106237642	rs2983777	T	G	1318.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr14	106237811	rs11621054	C	T	150.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:14,8:0.36:22
chr14	106303325	rs3764172	A	G	455.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.060;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=3.013;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.42;ReadPosRankSum=0.236;SOR=0.418;set=HC	GT:AD:AF:DP	0/1:74,29:0.28:103
chr14	106303699	rs10139433	G	A	424.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:40,22:0.35:62
chr14	106303846	rs1005582	C	T	7764.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr14	106303948	rs1005581	A	G	6507.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr14	106304899	rs762807	G	T	483.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:48,28:0.37:76
chr14	106306841	rs709589	C	T	1173.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:113,61:0.35:174
chr14	106307054	rs2753491	C	G	1259.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr14	106307418	rs2753492	G	A	2805.77	.	AC=1;AF=0.500;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	0/1:284,157:0.36:441
chr14	106310962	rs3751509	C	T	609.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr14	106311374	rs2856940	A	G	428.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr14	106318342	rs2256593	T	C	6784.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr14	106318440	rs2256589	T	C	6433.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.68;SOR=1.079;set=HC	GT:AD:AF:DP	1/1:0,144:1.00:144
chr14	106318450	rs2753504	G	A	6469.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.56;SOR=0.923;set=HC	GT:AD:AF:DP	1/1:0,152:1.00:152
chr14	106321590	rs12365	C	A	4066.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:1,149:0.99:150
chr14	106321913	rs1136534	G	A	7126.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr14	106322388	rs2753506	G	A	765.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:21,28:0.57:49
chr14	106329287	rs13379369	G	A	159.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:27,9:0.25:36
chr14	106329435	rs1950943	T	G	8009.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:120,197:0.62:317
chr14	106329449	.	ATG	A	9071.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.791;ClippingRankSum=0.000;DP=367;ExcessHet=3.0103;FS=1.762;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.79;ReadPosRankSum=-0.910;SOR=0.595;set=HC	GT:AD:AF:DP	0/1:140,226:0.62:366
chr14	106329451	.	GTA	ACC	2934	.	AC=1;AF=0.500;AN=2;BRF=0.5;FR=0.5000;HP=2;HapScore=1;MGOF=12;MMLQ=22;MQ=60.0;NF=57;NR=57;PP=2934;QD=20;SC=AGACGTCCATGTAGTAGTAGT;SbPval=0.32;Source=Platypus;TC=224;TCF=124;TCR=100;TR=114;WE=106329461;WS=106329440;set=Platypus	GT:AD:AF:DP	1/0:110,114:0.51:224
chr14	106329453	.	A	ACC	9309.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.794;ClippingRankSum=0.000;DP=364;ExcessHet=3.0103;FS=1.769;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.65;ReadPosRankSum=-1.153;SOR=0.601;set=HC	GT:AD:AF:DP	0/1:138,225:0.62:363
chr14	106329919	rs3752943	G	A	2163.77	.	AC=1;AF=0.500;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	0/1:235,119:0.34:354
chr14	106330117	rs3752944	G	A	915.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.798;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=1.646;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.98;ReadPosRankSum=0.657;SOR=0.875;set=HC	GT:AD:AF:DP	0/1:60,42:0.41:102
chr14	106330126	rs3752945	C	A	1654.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.863;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.749;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.55;ReadPosRankSum=-0.808;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:54,46:0.46:100
chr14	106330178	rs61126474	G	A	1102.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:67,45:0.40:112
chr14	106330197	rs60847425	T	C	1289.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:70,51:0.42:121
chr14	106330320	rs2857385	A	C	19329.77	.	AC=2;AF=1.00;AN=2;DB;DP=707;set=Intersection	GT:AD:AF:DP	1/1:2,702:1.00:704
chr14	106330355	rs74678017	C	G	6090.77	.	AC=1;AF=0.500;AN=2;DB;DP=907;set=Intersection	GT:AD:AF:DP	0/1:570,332:0.37:902
chr14	106330370	rs2857384	G	A	24373.77	.	AC=2;AF=1.00;AN=2;DB;DP=938;set=Intersection	GT:AD:AF:DP	1/1:0,928:1.00:928
chr14	106330880	rs2236228	C	T	1446.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:102,75:0.42:177
chr14	106346740	rs2244932	A	G	2012.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr14	106346795	rs2244930	G	T	1925.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:58,87:0.60:145
chr14	106346990	rs2244917	G	C	2123.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:2,81:0.98:83
chr14	106347371	rs112800624	T	A	4527.77	.	AC=1;AF=0.500;AN=2;DB;DP=527;set=Intersection	GT:AD:AF:DP	0/1:301,225:0.43:526
chr14	106347420	rs72481504	T	C	6173.77	.	AC=1;AF=0.500;AN=2;DB;DP=716;set=Intersection	GT:AD:AF:DP	0/1:408,306:0.43:714
chr14	106347467	rs2516984	A	C	20965.77	.	AC=2;AF=1.00;AN=2;DB;DP=767;set=Intersection	GT:AD:AF:DP	1/1:2,762:1.00:764
chr14	106349827	rs188955129	G	A	186.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.709;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.79;MQRankSum=0.622;QD=3.59;ReadPosRankSum=1.715;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:39,13:0.25:52
chr14	106350569	rs2516978	C	T	1968.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:85,88:0.51:173
chr14	106350623	rs2753523	G	C	5192.77	.	AC=1;AF=0.500;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	0/1:184,239:0.57:423
chr14	106350696	rs2857368	A	G	7873.77	.	AC=1;AF=0.500;AN=2;DB;DP=636;set=Intersection	GT:AD:AF:DP	0/1:256,377:0.60:633
chr14	106354353	rs2516972	C	T	2115.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:45,87:0.66:132
chr14	106354418	rs12894229	G	A	2407.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:165,116:0.41:281
chr14	106354450	rs113647906	A	G	3299.77	.	AC=1;AF=0.500;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	0/1:269,154:0.36:423
chr14	106354474	rs199550558	TACAGGAG	T	6838.73	.	AC=1;AF=0.500;AN=2;DB;DP=541;set=Intersection	GT:AD:AF:DP	0/1:343,191:0.36:534
chr14	106354495	rs200584328	A	AG	7750.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.385;ClippingRankSum=0.000;DB;DP=578;ExcessHet=3.0103;FS=1.819;MLEAC=1;MLEAF=0.500;MQ=57.38;MQRankSum=-16.637;QD=13.50;ReadPosRankSum=0.338;SOR=0.854;set=HC	GT:AD:AF:DP	0/1:367,207:0.36:574
chr14	106354498	rs202197703	CT	C	7870.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.574;ClippingRankSum=0.000;DB;DP=585;ExcessHet=3.0103;FS=1.832;MLEAC=1;MLEAF=0.500;MQ=57.41;MQRankSum=-16.438;QD=13.50;ReadPosRankSum=-0.001;SOR=0.839;set=HC	GT:AD:AF:DP	0/1:370,213:0.37:583
chr14	106354503	rs111599611	C	T	8049.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.363;ClippingRankSum=0.000;DB;DP=605;ExcessHet=3.0103;FS=1.144;MLEAC=1;MLEAF=0.500;MQ=57.50;MQRankSum=-16.103;QD=13.35;ReadPosRankSum=-0.508;SOR=0.817;set=HC	GT:AD:AF:DP	0/1:378,225:0.37:603
chr14	106354531	rs112554218	T	C	4481.77	.	AC=1;AF=0.500;AN=2;DB;DP=605;set=Intersection	GT:AD:AF:DP	0/1:365,237:0.39:602
chr14	106354666	rs188457056	C	T	1974.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.222;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=4.476;MLEAC=1;MLEAF=0.500;MQ=58.89;MQRankSum=-4.074;QD=15.55;ReadPosRankSum=-0.287;SOR=1.554;set=HC	GT:AD:AF:DP	0/1:74,53:0.42:127
chr14	106354668	rs190753651	T	C	1974.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.314;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=6.289;MLEAC=1;MLEAF=0.500;MQ=58.87;MQRankSum=-4.022;QD=15.80;ReadPosRankSum=-0.811;SOR=1.603;set=HC	GT:AD:AF:DP	0/1:72,53:0.42:125
chr14	106356790	.	T	C	76	.	AC=1;AF=0.500;AN=2;BRF=0.32;FR=0.5000;HP=2;HapScore=2;MGOF=40;MMLQ=28;MQ=60.0;NF=5;NR=0;PP=76;QD=22.1542425094;SC=ATCCCTGTCTTTCTGAGGACA;SbPval=1.0;Source=Platypus;TC=13;TCF=12;TCR=1;TR=5;WE=106356798;WS=106356788;set=Platypus	GT:AD:AF:DP	1/0:8,5:0.38:13
chr14	106356922	rs192882575	G	A	1493.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:77,80:0.51:157
chr14	106356974	rs2753529	G	C	1888.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:83,92:0.53:175
chr14	106357467	rs191478264	G	A	4564.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.988;ClippingRankSum=0.000;DB;DP=285;ExcessHet=3.0103;FS=1.684;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.24;ReadPosRankSum=0.790;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:163,118:0.42:281
chr14	106357470	rs113407144	C	T	4589.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.661;ClippingRankSum=0.000;DB;DP=296;ExcessHet=3.0103;FS=2.262;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.72;ReadPosRankSum=-0.067;SOR=0.556;set=HC	GT:AD:AF:DP	0/1:167,125:0.43:292
chr14	106357527	rs190681079	G	C	5593.77	.	AC=1;AF=0.500;AN=2;DB;DP=661;set=Intersection	GT:AD:AF:DP	0/1:368,282:0.43:650
chr14	106357644	rs149695294	T	C	6071.77	.	AC=1;AF=0.500;AN=2;DB;DP=913;set=Intersection	GT:AD:AF:DP	0/1:571,336:0.37:907
chr14	106357673	rs145534823	T	G	4869.77	.	AC=1;AF=0.500;AN=2;DB;DP=677;set=Intersection	GT:AD:AF:DP	0/1:428,245:0.36:673
chr14	106357749	rs2254707	C	T	8343.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.12;SOR=2.864;set=HC	GT:AD:AF:DP	1/1:0,231:1.00:231
chr14	106357749	.	CACCTCACAA	TACCTCACAA,TGCCTCACAG	2962	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.29;FR=0.5000,0.5000;HP=1;HapScore=1;MGOF=14;MMLQ=28;MQ=60.0;NF=31,15;NR=168,58;PP=2962,2934;QD=20;SC=AGAGGCCAGCCACCTCACAAC;SbPval=0.54;Source=Platypus;TC=201;TCF=32;TCR=169;TR=199,73;WE=106357766;WS=106357739;set=Platypus	GT:AF:DP	0/1:0.99:201
chr14	106357750	rs181471980	A	G	3392.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.175;ClippingRankSum=0.000;DB;DP=229;ExcessHet=3.0103;FS=12.744;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.01;ReadPosRankSum=0.673;SOR=0.220;set=HC	GT:AD:AF:DP	0/1:132,94:0.42:226
chr14	106357758	rs143569449	A	G	3277.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.181;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=12.468;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.31;ReadPosRankSum=1.110;SOR=0.214;set=HC	GT:AD:AF:DP	0/1:116,85:0.42:201
chr14	106359218	rs185679996	A	G	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.951;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.74;MQRankSum=-2.682;QD=2.41;ReadPosRankSum=1.083;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:11,3:0.21:14
chr14	106359259	rs2857366	A	G	721.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr14	106359285	rs181750527	A	G	212.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:20,12:0.38:32
chr14	106359348	rs184135818	A	G	179.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.023;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=3.247;MLEAC=1;MLEAF=0.500;MQ=56.23;MQRankSum=-1.161;QD=5.62;ReadPosRankSum=-0.702;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:20,12:0.38:32
chr14	106359388	rs369242089	A	G	123.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.204;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.26;MQRankSum=0.423;QD=4.95;ReadPosRankSum=-1.286;SOR=0.392;set=HC	GT:AD:AF:DP	0/1:17,8:0.32:25
chr14	106359404	.	C	T	55.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.883;ClippingRankSum=0.000;DP=17;ExcessHet=3.0103;FS=2.667;MLEAC=1;MLEAF=0.500;MQ=52.89;MQRankSum=-0.825;QD=3.28;ReadPosRankSum=0.758;SOR=1.460;set=HC	GT:AD:AF:DP	0/1:14,3:0.18:17
chr14	106359406	.	A	G	55.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.502;ClippingRankSum=0.000;DP=17;ExcessHet=3.0103;FS=2.667;MLEAC=1;MLEAF=0.500;MQ=52.89;MQRankSum=-0.825;QD=3.28;ReadPosRankSum=0.758;SOR=1.460;set=HC	GT:AD:AF:DP	0/1:14,3:0.18:17
chr14	106359409	.	G	GCCA	46.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.922;ClippingRankSum=0.000;DP=15;ExcessHet=3.0103;FS=2.869;MLEAC=1;MLEAF=0.500;MQ=51.87;MQRankSum=-0.615;QD=3.12;ReadPosRankSum=0.435;SOR=1.781;set=HC	GT:AD:AF:DP	0/1:12,3:0.20:15
chr14	106359416	.	C	T	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.854;ClippingRankSum=-0.000;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=43.52;MQRankSum=-0.566;QD=4.35;ReadPosRankSum=-0.319;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:6,2:0.25:8
chr14	106359495	rs34536736	C	G	56.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.67;QD=18.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr14	106360217	rs150427734	CG	TA	2521.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;JOINED;set=Intersection	GT:AD:AF:DP	0/1:132,69:0.34:201
chr14	106360231	rs149611346	G	A	1690.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:152,86:0.36:238
chr14	106360281	rs144346910	T	C	3008.77	.	AC=1;AF=0.500;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	0/1:259,161:0.38:420
chr14	106360292	rs3838842	GA	G	5395.73	.	AC=1;AF=0.500;AN=2;DB;DP=444;set=Intersection	GT:AD:AF:DP	0/1:273,168:0.38:441
chr14	106361376	rs190627972	T	C	834.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:96,47:0.33:143
chr14	106361418	rs2753533	T	C	6834.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr14	106361515	rs143676405	C	T	2597.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:147,134:0.48:281
chr14	106361561	rs61993631	GC	AT	8721.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=58.81;QD=44.73;SOR=1.173;set=HC	GT:AD:AF:DP	1/1:0,195:1.00:195
chr14	106361564	rs61993633	A	T	8721.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.78;QD=45.90;SOR=1.143;set=HC	GT:AD:AF:DP	1/1:0,190:1.00:190
chr14	106361605	rs192568966	G	A	1058.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:56,46:0.45:102
chr14	106368526	rs200686094	C	T	117.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.581;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.88;MQRankSum=-5.177;QD=1.51;ReadPosRankSum=1.278;SOR=0.545;set=HC	GT:AD:AF:DP	0/1:63,15:0.19:78
chr14	106368542	rs201662702	T	C	378.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.298;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=2.807;MLEAC=1;MLEAF=0.500;MQ=58.56;MQRankSum=-4.810;QD=6.42;ReadPosRankSum=1.951;SOR=0.331;set=HC	GT:AD:AF:DP	0/1:46,13:0.22:59
chr14	106368544	rs200115395	G	C	378.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.516;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=2.815;MLEAC=1;MLEAF=0.500;MQ=58.48;MQRankSum=-4.656;QD=6.76;ReadPosRankSum=1.680;SOR=0.335;set=HC	GT:AD:AF:DP	0/1:43,13:0.23:56
chr14	106368551	rs201130584	A	G	345.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.189;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=1.367;MLEAC=1;MLEAF=0.500;MQ=58.70;MQRankSum=-4.280;QD=6.52;ReadPosRankSum=1.884;SOR=0.347;set=HC	GT:AD:AF:DP	0/1:41,12:0.23:53
chr14	106369395	rs139933477	T	C	3885.77	.	AC=1;AF=0.500;AN=2;DB;DP=488;set=Intersection	GT:AD:AF:DP	0/1:291,196:0.40:487
chr14	106369433	rs112597211	T	C	4402.77	.	AC=1;AF=0.500;AN=2;DB;DP=641;set=Intersection	GT:AD:AF:DP	0/1:398,240:0.38:638
chr14	106369534	rs2516960	A	G	2526.77	.	AC=1;AF=0.500;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	0/1:234,129:0.36:363
chr14	106370370	rs141575023	C	T	661.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:77,37:0.32:114
chr14	106370603	rs2857350	G	C	904.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:87,48:0.36:135
chr14	106373085	rs139694830	TT	CC	3599.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;JOINED;set=Intersection	GT:AD:AF:DP	0/1:177,99:0.36:276
chr14	106373208	rs146631355	T	G	2738.77	.	AC=1;AF=0.500;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	0/1:257,150:0.37:407
chr14	106375551	rs2857348	C	A	757.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.353;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=7.971;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.94;ReadPosRankSum=2.944;SOR=0.123;set=HC	GT:AD:AF:DP	0/1:18,20:0.53:38
chr14	106375555	rs2516957	A	G	757.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.532;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=7.971;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.94;ReadPosRankSum=2.610;SOR=0.123;set=HC	GT:AD:AF:DP	0/1:18,20:0.53:38
chr14	106375560	rs112674522	C	T	757.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.052;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=7.971;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.94;ReadPosRankSum=1.661;SOR=0.123;set=HC	GT:AD:AF:DP	0/1:18,20:0.53:38
chr14	106375721	rs111736413	G	A	1175.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:94,65:0.41:159
chr14	106376354	rs2516955	A	G	4079.77	.	AC=1;AF=0.500;AN=2;DB;DP=595;set=Intersection	GT:AD:AF:DP	0/1:366,220:0.38:586
chr14	106378962	rs11160893	C	T	1890.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:168,94:0.36:262
chr14	106379020	rs113166883	G	A	3265.77	.	AC=1;AF=0.500;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	0/1:292,168:0.37:460
chr14	106380073	rs2856850	A	G	98.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.335;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.29;ReadPosRankSum=-1.167;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:22,8:0.27:30
chr14	106380171	rs3794478	C	T	809.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.795;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=3.943;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.90;ReadPosRankSum=0.005;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:49,42:0.46:91
chr14	106380174	rs2157630	C	A	3213.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr14	106385233	rs2857334	AC	GT	571.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.453;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.82;ReadPosRankSum=0.303;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:10,14:0.58:24
chr14	106385245	rs2857332	C	G	599.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.599;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=1.527;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.21;ReadPosRankSum=0.031;SOR=0.832;set=HC	GT:AD:AF:DP	0/1:11,16:0.59:27
chr14	106385332	rs2250700	G	C	405.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.838;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.45;ReadPosRankSum=0.172;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:26,22:0.46:48
chr14	106386996	rs59137576	T	C	3483.77	.	AC=1;AF=0.500;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	0/1:277,178:0.39:455
chr14	106387171	rs56082637	T	C	1175.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:81,63:0.44:144
chr14	106388588	rs2516944	A	T	433.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:45,22:0.33:67
chr14	106436780	rs67875134	A	G	1295.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:191,81:0.30:272
chr14	106437036	rs71405043	TCATGGTTTCGTTATACACAGGAGCAAGTGTTTCAAAAA	T	2435.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.618;ClippingRankSum=0.000;DB;DP=477;ExcessHet=3.0103;FS=4.509;MLEAC=1;MLEAF=0.500;MQ=58.36;MQRankSum=-4.742;QD=5.22;ReadPosRankSum=2.550;SOR=1.115;set=HC	GT:AD:AF:DP	0/1:381,86:0.18:467
chr14	106452628	rs7144717	T	G	2222.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:189,105:0.36:294
chr14	106452817	rs1065059	A	G	7264.77	.	AC=1;AF=0.500;AN=2;DB;DP=1085;set=Intersection	GT:AD:AF:DP	0/1:681,399:0.37:1080
chr14	106471268	rs1143505	A	G	9890.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.273;ClippingRankSum=0.000;DB;DP=713;ExcessHet=3.0103;FS=0.554;MLEAC=1;MLEAF=0.500;MQ=59.61;MQRankSum=-11.224;QD=13.95;ReadPosRankSum=-1.861;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:442,267:0.38:709
chr14	106471273	rs77346190	C	T	10057.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.434;ClippingRankSum=0.000;DB;DP=743;ExcessHet=3.0103;FS=0.554;MLEAC=1;MLEAF=0.500;MQ=59.67;MQRankSum=-11.000;QD=13.61;ReadPosRankSum=-1.380;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:460,279:0.38:739
chr14	106471353	rs34069216	C	T	9412.77	.	AC=1;AF=0.500;AN=2;DB;DP=1159;set=Intersection	GT:AD:AF:DP	0/1:679,473:0.41:1152
chr14	106471388	rs34874585	C	A	9836.77	.	AC=1;AF=0.500;AN=2;DB;DP=1185;set=Intersection	GT:AD:AF:DP	0/1:677,501:0.43:1178
chr14	106471528	rs35966079	C	A	5272.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.965;ClippingRankSum=0.000;DB;DP=509;ExcessHet=3.0103;FS=3.659;MLEAC=1;MLEAF=0.500;MQ=58.54;MQRankSum=-10.900;QD=10.40;ReadPosRankSum=0.899;SOR=1.021;set=HC	GT:AD:AF:DP	0/1:352,155:0.31:507
chr14	106471534	rs36065697	A	G	5369.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.475;ClippingRankSum=0.000;DB;DP=494;ExcessHet=3.0103;FS=3.604;MLEAC=1;MLEAF=0.500;MQ=58.35;MQRankSum=-12.487;QD=10.91;ReadPosRankSum=-0.299;SOR=0.993;set=HC	GT:AD:AF:DP	0/1:340,152:0.31:492
chr14	106471547	rs1143496	A	G	2863.77	.	AC=1;AF=0.500;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	0/1:309,138:0.31:447
chr14	106471580	rs56320742	GC	TT	3783.77	.	AC=1;AF=0.500;AN=2;DB;DP=371;JOINED;set=Intersection	GT:AD:AF:DP	0/1:259,112:0.30:371
chr14	106471595	rs34652473	T	C	2056.77	.	AC=1;AF=0.500;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	0/1:243,104:0.30:347
chr14	106471685	rs34315295	G	A	1665.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:166,91:0.35:257
chr14	106494269	rs12895651	T	C	3125.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;MQ=59.97;set=Intersection	GT:AD:AF:DP	0/1:158,150:0.49:308
chr14	106494503	rs17705658	G	A	3785.77	.	AC=1;AF=0.500;AN=2;DB;DP=500;set=Intersection	GT:AD:AF:DP	0/1:290,197:0.40:487
chr14	106518400	rs113404618	T	C	1684.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.443;ClippingRankSum=0.000;DB;DP=445;ExcessHet=3.0103;FS=0.632;MLEAC=1;MLEAF=0.500;MQ=54.97;MQRankSum=-0.540;QD=3.81;ReadPosRankSum=-0.255;SOR=0.600;set=HC	GT:AD:AF:DP	0/1:333,109:0.25:442
chr14	106518565	rs113460079	C	T	6046.77	.	AC=1;AF=0.500;AN=2;DB;DP=1021;set=Intersection	GT:AD:AF:DP	0/1:677,332:0.33:1009
chr14	106518738	rs112149134	C	A	5934.77	.	AC=1;AF=0.500;AN=2;DB;DP=1058;set=Intersection	GT:AD:AF:DP	0/1:708,333:0.32:1041
chr14	106518848	rs2073679	T	C	5875.77	.	AC=1;AF=0.500;AN=2;DB;DP=826;set=Intersection	GT:AD:AF:DP	0/1:497,302:0.38:799
chr14	106518930	rs112920599	C	T	2289.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:206,114:0.36:320
chr14	106578952	rs11160922	A	T	3575.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr14	106579356	rs17549886	A	G	603.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:28,27:0.49:55
chr14	106586290	rs10431755	C	T	2702.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.171;ClippingRankSum=0.000;DB;DP=592;ExcessHet=3.0103;FS=1.236;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.60;ReadPosRankSum=-1.848;SOR=0.585;set=HC	GT:AD:AF:DP	0/1:419,168:0.29:587
chr14	106622076	rs12433709	G	A	7153.77	.	AC=1;AF=0.500;AN=2;DB;DP=1001;set=Intersection	GT:AD:AF:DP	0/1:625,369:0.37:994
chr14	106641761	rs72695948	A	G	12423.77	.	AC=1;AF=0.500;AN=2;DB;DP=924;set=Intersection	GT:AD:AF:DP	0/1:340,568:0.63:908
chr14	106667592	rs3751514	G	A	4203.77	.	AC=1;AF=0.500;AN=2;DB;DP=476;set=Intersection	GT:AD:AF:DP	0/1:265,205:0.44:470
chr14	106667902	rs58794564	A	AC	28740.73	.	AC=2;AF=1.00;AN=2;DB;DP=1051;set=Intersection	GT:AD:AF:DP	1/1:2,1019:1.00:1021
chr14	106691778	rs4470054	T	A	3686.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.910;ClippingRankSum=0.000;DB;DP=1147;ExcessHet=3.0103;FS=2.662;MLEAC=1;MLEAF=0.500;MQ=57.63;MQRankSum=-28.490;QD=3.23;ReadPosRankSum=6.808;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:972,168:0.15:1140
chr14	106691796	.	GTAA	G	2058.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.691;ClippingRankSum=0.000;DP=1243;ExcessHet=3.0103;FS=2.049;MLEAC=1;MLEAF=0.500;MQ=58.36;MQRankSum=-29.220;QD=1.70;ReadPosRankSum=5.427;SOR=0.878;set=HC	GT:AD:AF:DP	0/1:1082,128:0.11:1210
chr14	106691800	.	C	G	1457.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.446;ClippingRankSum=0.000;DP=1190;ExcessHet=3.0103;FS=2.049;MLEAC=1;MLEAF=0.500;MQ=58.36;MQRankSum=-28.836;QD=1.24;ReadPosRankSum=4.899;SOR=0.875;set=HC	GT:AD:AF:DP	0/1:1059,113:0.10:1172
chr14	106725482	rs56069819	A	C	6620.77	.	AC=1;AF=0.500;AN=2;DB;DP=709;set=Intersection	GT:AD:AF:DP	0/1:409,295:0.42:704
chr14	106725517	rs140098248	A	G	872.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.774;ClippingRankSum=0.000;DB;DP=745;ExcessHet=3.0103;FS=4.976;MLEAC=1;MLEAF=0.500;MQ=57.06;MQRankSum=-7.435;QD=1.18;ReadPosRankSum=-1.923;SOR=1.057;set=HC	GT:AD:AF:DP	0/1:672,65:0.09:737
chr14	106725521	rs143792912	A	C	1051.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.258;ClippingRankSum=0.000;DB;DP=736;ExcessHet=3.0103;FS=8.135;MLEAC=1;MLEAF=0.500;MQ=57.05;MQRankSum=-6.510;QD=1.43;ReadPosRankSum=-2.540;SOR=1.167;set=HC	GT:AD:AF:DP	0/1:660,73:0.10:733
chr14	106725523	rs146848049	C	A	1087.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.551;ClippingRankSum=0.000;DB;DP=751;ExcessHet=3.0103;FS=6.118;MLEAC=1;MLEAF=0.500;MQ=57.11;MQRankSum=-6.211;QD=1.45;ReadPosRankSum=-2.361;SOR=1.132;set=HC	GT:AD:AF:DP	0/1:671,77:0.10:748
chr14	106725538	rs71416657	G	T	1655.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.733;ClippingRankSum=0.000;DB;DP=785;ExcessHet=3.0103;FS=4.360;MLEAC=1;MLEAF=0.500;MQ=57.19;MQRankSum=-7.652;QD=2.12;ReadPosRankSum=0.862;SOR=0.974;set=HC	GT:AD:AF:DP	0/1:694,88:0.11:782
chr14	106725545	rs184685096	GT	AA	1832.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.325;ClippingRankSum=0.000;DB;DP=807;ExcessHet=3.0103;FS=4.176;JOINED;MLEAC=1;MLEAF=0.500;MQ=57.22;MQRankSum=-7.732;QD=2.28;ReadPosRankSum=2.643;SOR=0.869;set=HC	GT:AD:AF:DP	0/1:707,96:0.12:803
chr14	106725558	.	C	A	361.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.573;ClippingRankSum=0.000;DP=815;ExcessHet=3.0103;FS=2.885;MLEAC=1;MLEAF=0.500;MQ=57.51;MQRankSum=-9.835;QD=0.45;ReadPosRankSum=3.779;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:707,104:0.13:811
chr14	106725574	rs12433829	T	C	687.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.181;ClippingRankSum=0.000;DB;DP=802;ExcessHet=3.0103;FS=1.638;MLEAC=1;MLEAF=0.500;MQ=58.57;MQRankSum=-15.290;QD=0.87;ReadPosRankSum=4.017;SOR=0.523;set=HC	GT:AD:AF:DP	0/1:680,114:0.14:794
chr14	106733216	rs201747581	T	C	5955.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.771;ClippingRankSum=0.000;DB;DP=1160;ExcessHet=3.0103;FS=1.450;MLEAC=1;MLEAF=0.500;MQ=59.23;MQRankSum=-17.126;QD=5.24;ReadPosRankSum=5.110;SOR=0.543;set=HC	GT:AD:AF:DP	0/1:923,213:0.19:1136
chr14	106733223	rs200123370	T	G	5780.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.578;ClippingRankSum=0.000;DB;DP=1176;ExcessHet=3.0103;FS=0.696;MLEAC=1;MLEAF=0.500;MQ=59.27;MQRankSum=-17.641;QD=5.01;ReadPosRankSum=4.873;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:948,206:0.18:1154
chr14	106733228	rs201071498	C	T	5519.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.564;ClippingRankSum=0.000;DB;DP=1205;ExcessHet=3.0103;FS=0.722;MLEAC=1;MLEAF=0.500;MQ=59.31;MQRankSum=-18.068;QD=4.67;ReadPosRankSum=4.811;SOR=0.559;set=HC	GT:AD:AF:DP	0/1:983,200:0.17:1183
chr14	106733254	rs200146986	G	C	3444.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.077;ClippingRankSum=0.000;DB;DP=1262;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.43;MQRankSum=-19.846;QD=2.77;ReadPosRankSum=-0.972;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:1073,171:0.14:1244
chr14	106733261	.	G	T	3127.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.365;ClippingRankSum=0.000;DP=1248;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.42;MQRankSum=-20.948;QD=2.54;ReadPosRankSum=-1.787;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:1078,152:0.12:1230
chr14	106733287	.	A	C	293.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.458;ClippingRankSum=0.000;DP=1206;ExcessHet=3.0103;FS=1.060;MLEAC=1;MLEAF=0.500;MQ=59.35;MQRankSum=-28.191;QD=0.25;ReadPosRankSum=-3.431;SOR=1.003;set=HC	GT:AD:AF:DP	0/1:1102,89:0.07:1191
chr14	106733289	.	CC	AG	272.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.575;ClippingRankSum=0.000;DP=1195;ExcessHet=3.0103;FS=2.445;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.35;MQRankSum=-28.812;QD=0.23;ReadPosRankSum=-3.401;SOR=1.074;set=HC	GT:AD:AF:DP	0/1:1099,85:0.07:1184
chr14	106733380	rs200914519	CC	TT	70.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.453;ClippingRankSum=0.000;DB;DP=596;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.35;MQRankSum=-16.611;QD=0.12;ReadPosRankSum=2.867;SOR=0.475;set=HC	GT:AD:AF:DP	0/1:543,41:0.07:584
chr14	106733389	rs200188513	AG	TA	347.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.147;ClippingRankSum=0.000;DB;DP=543;ExcessHet=3.0103;FS=2.219;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.28;MQRankSum=-14.511;QD=0.65;ReadPosRankSum=1.895;SOR=0.371;set=HC	GT:AD:AF:DP	0/1:485,48:0.09:533
chr14	106733437	rs112335453	G	C	760.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.526;ClippingRankSum=0.000;DB;DP=343;ExcessHet=3.0103;FS=18.274;MLEAC=1;MLEAF=0.500;MQ=59.32;MQRankSum=-7.821;QD=2.28;ReadPosRankSum=0.653;SOR=0.207;set=HC	GT:AD:AF:DP	0/1:269,64:0.19:333
chr14	106733458	rs116600694	G	A	2186.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.882;ClippingRankSum=0.000;DB;DP=325;ExcessHet=3.0103;FS=14.061;MLEAC=1;MLEAF=0.500;MQ=59.52;MQRankSum=-5.999;QD=6.94;ReadPosRankSum=0.559;SOR=0.258;set=HC	GT:AD:AF:DP	0/1:245,70:0.22:315
chr14	106733461	rs78432605	C	G	2222.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.178;ClippingRankSum=0.000;DB;DP=322;ExcessHet=3.0103;FS=15.196;MLEAC=1;MLEAF=0.500;MQ=59.58;MQRankSum=-5.963;QD=7.12;ReadPosRankSum=0.695;SOR=0.258;set=HC	GT:AD:AF:DP	0/1:242,70:0.22:312
chr14	106733463	rs116472681	G	A	2176.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.560;ClippingRankSum=0.000;DB;DP=319;ExcessHet=3.0103;FS=13.802;MLEAC=1;MLEAF=0.500;MQ=59.58;MQRankSum=-5.927;QD=7.04;ReadPosRankSum=0.963;SOR=0.266;set=HC	GT:AD:AF:DP	0/1:239,70:0.23:309
chr14	106733520	rs2338199	C	A	4060.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:137,137:0.50:274
chr14	106733532	rs116710349	G	A	1523.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.308;ClippingRankSum=0.000;DB;DP=274;ExcessHet=3.0103;FS=0.542;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=-3.319;QD=5.64;ReadPosRankSum=0.661;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:212,58:0.21:270
chr14	106733555	rs8013154	A	G	1506.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.622;ClippingRankSum=0.000;DB;DP=255;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.79;MQRankSum=-3.884;QD=6.00;ReadPosRankSum=-1.244;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:198,53:0.21:251
chr14	106733593	rs4511432	G	T	393.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.289;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=0.711;MLEAC=1;MLEAF=0.500;MQ=59.62;MQRankSum=-5.185;QD=2.09;ReadPosRankSum=-0.350;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:153,35:0.19:188
chr14	106733638	rs8013719	G	C	517.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.705;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.36;MQRankSum=-5.509;QD=4.39;ReadPosRankSum=0.071;SOR=0.742;set=HC	GT:AD:AF:DP	0/1:95,23:0.19:118
chr14	106733653	rs114563889	A	C	458.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.394;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.00;MQRankSum=-6.126;QD=5.04;ReadPosRankSum=0.961;SOR=0.762;set=HC	GT:AD:AF:DP	0/1:74,17:0.19:91
chr14	106733679	rs116541104	G	C	309.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.593;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.24;MQRankSum=-5.835;QD=5.96;ReadPosRankSum=0.474;SOR=0.351;set=HC	GT:AD:AF:DP	0/1:41,11:0.21:52
chr14	106733682	rs114939362	G	C	309.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.835;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=1.853;MLEAC=1;MLEAF=0.500;MQ=58.09;MQRankSum=-5.574;QD=6.45;ReadPosRankSum=-0.169;SOR=0.313;set=HC	GT:AD:AF:DP	0/1:37,11:0.23:48
chr14	106758201	rs2073677	G	T	676.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:57,33:0.37:90
chr14	106780634	rs34629512	G	A	1871.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:166,102:0.38:268
chr14	106780757	.	G	GTC	2660.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.033;ClippingRankSum=0.000;DP=243;ExcessHet=3.0103;FS=1.073;MLEAC=1;MLEAF=0.500;MQ=59.33;MQRankSum=-6.919;QD=11.32;ReadPosRankSum=2.007;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:159,76:0.32:235
chr14	106780760	.	TCC	T	2628.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.170;ClippingRankSum=0.000;DP=237;ExcessHet=3.0103;FS=1.722;MLEAC=1;MLEAF=0.500;MQ=59.26;MQRankSum=-7.289;QD=11.23;ReadPosRankSum=2.594;SOR=0.572;set=HC	GT:AD:AF:DP	0/1:161,73:0.31:234
chr14	106780817	rs8009554	A	C	1322.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:86,61:0.41:147
chr14	106791006	rs10148365	C	T	7725.77	.	AC=1;AF=0.500;AN=2;DB;DP=472;set=Intersection	GT:AD:AF:DP	0/1:158,311:0.66:469
chr14	106791119	rs4502119	A	G	6669.77	.	AC=1;AF=0.500;AN=2;DB;DP=905;set=Intersection	GT:AD:AF:DP	0/1:540,356:0.40:896
chr14	106791164	rs138007967	C	T	6879.77	.	AC=1;AF=0.500;AN=2;DB;DP=879;set=Intersection	GT:AD:AF:DP	0/1:524,349:0.40:873
chr14	106791200	rs8017285	GC	AG	11147.77	.	AC=1;AF=0.500;AN=2;DB;DP=733;JOINED;set=Intersection	GT:AD:AF:DP	0/1:433,298:0.41:731
chr14	106805303	rs145562667	C	A	1884.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:158,97:0.38:255
chr14	106805440	rs6576153	A	G	11090.77	.	AC=2;AF=1.00;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	1/1:0,402:1.00:402
chr14	106805508	rs4462488	G	A	5924.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr14	106845193	rs10129987	C	G	2061.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.62;QD=34.95;SOR=8.189;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr14	106845209	rs10129994	C	G	2855.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr14	106858786	rs12588563	C	A	662.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:32,30:0.48:62
chr14	106859131	.	G	C	49	.	AC=1;AF=0.500;AN=2;BRF=0.24;FR=0.5000;HP=1;HapScore=2;MGOF=20;MMLQ=28;MQ=54.73;NF=0;NR=4;PP=49;QD=20.9428031368;SC=TATGAATATCGTAGGGCTGCC;SbPval=0.05;Source=Platypus;TC=22;TCF=12;TCR=10;TR=4;WE=106859139;WS=106859121;set=Platypus	GT:AD:AF:DP	1/0:18,4:0.18:22
chr14	106859191	rs61997354	G	C	210.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:40,12:0.23:52
chr14	106859351	rs1008525	G	C	2697.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.00;QD=26.71;SOR=1.431;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chr14	106859421	rs11160957	A	C	76.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=25.43;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr14	106877551	rs8020298	A	C	5605.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr14	106922052	rs10782500	T	G	661.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:48,27:0.36:75
chr14	106922368	rs6576168	C	T	1513.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:118,75:0.39:193
chr14	106926107	rs7401587	T	C	969.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:99,49:0.33:148
chr14	106926328	rs61999676	A	C	9582.77	.	AC=1;AF=0.500;AN=2;DB;DP=1346;set=Intersection	GT:AD:AF:DP	0/1:831,499:0.38:1330
chr14	106926362	rs61999677	C	T	8535.77	.	AC=1;AF=0.500;AN=2;DB;DP=1288;set=Intersection	GT:AD:AF:DP	0/1:821,455:0.36:1276
chr14	106926388	rs2467910	T	C	7675.77	.	AC=1;AF=0.500;AN=2;DB;DP=1140;set=Intersection	GT:AD:AF:DP	0/1:735,398:0.35:1133
chr14	106926456	rs79008247	A	C	5597.77	.	AC=1;AF=0.500;AN=2;DB;DP=791;set=Intersection	GT:AD:AF:DP	0/1:513,273:0.35:786
chr14	106937400	rs10134807	T	A	698.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:59,35:0.37:94
chr14	106937467	.	G	GC	551.73	.	AC=2;AF=1.00;AN=2;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr14	106940351	rs142032068	C	T	426.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.683;ClippingRankSum=0.000;DB;DP=409;ExcessHet=3.0103;FS=12.684;MLEAC=1;MLEAF=0.500;MQ=58.27;MQRankSum=-19.662;QD=1.06;ReadPosRankSum=-6.560;SOR=1.949;set=HC	GT:AD:AF:DP	0/1:347,55:0.14:402
chr14	106963101	rs7141669	C	T	4720.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.021;ClippingRankSum=0.000;DB;DP=763;ExcessHet=3.0103;FS=1.156;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.29;ReadPosRankSum=0.259;SOR=0.823;set=HC	GT:AD:AF:DP	0/1:485,265:0.35:750
chr14	107013129	rs2073674	A	C	7474.77	.	AC=1;AF=0.500;AN=2;DB;DP=908;set=Intersection	GT:AD:AF:DP	0/1:533,370:0.41:903
chr14	107013201	rs2073673	G	T	11089.77	.	AC=1;AF=0.500;AN=2;DB;DP=786;set=Intersection	GT:AD:AF:DP	0/1:303,470:0.61:773
chr14	107034659	.	A	G	489.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.809;ClippingRankSum=0.000;DP=123;ExcessHet=3.0103;FS=0.961;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=-3.950;QD=3.98;ReadPosRankSum=0.244;SOR=0.514;set=HC	GT:AD:AF:DP	0/1:103,20:0.16:123
chr14	107034665	.	TCA	T	573.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.925;ClippingRankSum=0.000;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=-4.089;QD=4.19;ReadPosRankSum=0.473;SOR=0.585;set=HC	GT:AD:AF:DP	0/1:116,21:0.15:137
chr14	107034668	.	T	TCC	579.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.156;ClippingRankSum=0.000;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=-4.089;QD=4.23;ReadPosRankSum=-1.201;SOR=0.585;set=HC	GT:AD:AF:DP	0/1:116,21:0.15:137
chr14	107034679	rs370585113	C	T	508.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.109;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=-4.146;QD=3.46;ReadPosRankSum=0.433;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:125,22:0.15:147
chr14	107034681	.	G	C	508.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.835;ClippingRankSum=0.000;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=-4.150;QD=3.30;ReadPosRankSum=0.388;SOR=0.626;set=HC	GT:AD:AF:DP	0/1:131,23:0.15:154
chr14	107034705	rs200210193	G	A	525.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.214;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=0.848;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.15;ReadPosRankSum=0.379;SOR=0.781;set=HC	GT:AD:AF:DP	0/1:143,24:0.14:167
chr14	107034707	rs201053767	G	T	525.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.001;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.04;ReadPosRankSum=0.628;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:149,24:0.14:173
chr14	107034789	rs72686840	G	A	2536.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.110;ClippingRankSum=0.000;DB;DP=399;ExcessHet=3.0103;FS=2.124;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.39;ReadPosRankSum=0.391;SOR=0.853;set=HC	GT:AD:AF:DP	0/1:316,81:0.20:397
chr14	107034807	rs72686841	G	A	3329.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.694;ClippingRankSum=0.000;DB;DP=469;ExcessHet=3.0103;FS=2.141;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-2.641;QD=7.13;ReadPosRankSum=-0.062;SOR=0.868;set=HC	GT:AD:AF:DP	0/1:363,104:0.22:467
chr14	107034822	rs199503234	C	G	3692.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.738;ClippingRankSum=0.000;DB;DP=520;ExcessHet=3.0103;FS=3.037;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-2.603;QD=7.13;ReadPosRankSum=0.037;SOR=0.963;set=HC	GT:AD:AF:DP	0/1:400,118:0.23:518
chr14	107034846	rs199610746	TC	GT	4042.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.412;ClippingRankSum=0.000;DB;DP=591;ExcessHet=3.0103;FS=2.245;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-2.724;QD=6.86;ReadPosRankSum=1.462;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:464,125:0.21:589
chr14	107034854	rs201350766	C	A	4404.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.056;ClippingRankSum=0.000;DB;DP=639;ExcessHet=3.0103;FS=3.123;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-2.686;QD=6.93;ReadPosRankSum=0.934;SOR=0.935;set=HC	GT:AD:AF:DP	0/1:498,138:0.22:636
chr14	107034863	rs199809351	C	T	4581.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.512;ClippingRankSum=0.000;DB;DP=642;ExcessHet=3.0103;FS=5.147;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-2.645;QD=7.17;ReadPosRankSum=0.259;SOR=1.116;set=HC	GT:AD:AF:DP	0/1:497,142:0.22:639
chr14	107034869	rs200774123	AG	CA	4860.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.678;ClippingRankSum=0.000;DB;DP=664;ExcessHet=3.0103;FS=4.108;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.35;ReadPosRankSum=0.270;SOR=1.019;set=HC	GT:AD:AF:DP	0/1:515,146:0.22:661
chr14	107034873	rs199524561	GA	CC	4786.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.253;ClippingRankSum=0.000;DB;DP=688;ExcessHet=3.0103;FS=3.149;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.98;ReadPosRankSum=0.515;SOR=0.997;set=HC	GT:AD:AF:DP	0/1:536,150:0.22:686
chr14	107034920	rs72686843	C	T	3704.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.532;ClippingRankSum=0.000;DB;DP=874;ExcessHet=3.0103;FS=0.592;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.26;ReadPosRankSum=0.188;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:635,234:0.27:869
chr14	107034967	rs72686844	T	C	4125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.018;ClippingRankSum=0.000;DB;DP=976;ExcessHet=3.0103;FS=1.256;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-2.352;QD=4.26;ReadPosRankSum=1.387;SOR=0.574;set=HC	GT:AD:AF:DP	0/1:711,257:0.27:968
chr14	107035020	rs75660488	C	T	3830.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.208;ClippingRankSum=0.000;DB;DP=1053;ExcessHet=3.0103;FS=0.615;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.67;ReadPosRankSum=-2.043;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:795,250:0.24:1045
chr14	107035038	rs201745085	GG	AT	6168.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.382;ClippingRankSum=0.000;DB;DP=975;ExcessHet=3.0103;FS=1.402;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.37;ReadPosRankSum=0.483;SOR=0.854;set=HC	GT:AD:AF:DP	0/1:766,203:0.21:969
chr14	107035042	rs200794686	G	A	6131.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.366;ClippingRankSum=0.000;DB;DP=958;ExcessHet=3.0103;FS=0.648;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.44;ReadPosRankSum=0.770;SOR=0.792;set=HC	GT:AD:AF:DP	0/1:756,196:0.21:952
chr14	107035064	rs113207564	G	A	5188.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.259;ClippingRankSum=0.000;DB;DP=874;ExcessHet=3.0103;FS=0.657;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=-1.977;QD=5.96;ReadPosRankSum=0.088;SOR=0.816;set=HC	GT:AD:AF:DP	0/1:694,177:0.20:871
chr14	107035066	.	C	T	5252.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.440;ClippingRankSum=0.000;DP=860;ExcessHet=3.0103;FS=0.660;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=-2.000;QD=6.13;ReadPosRankSum=0.478;SOR=0.809;set=HC	GT:AD:AF:DP	0/1:686,171:0.20:857
chr14	107035068	.	C	G	5150.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.166;ClippingRankSum=0.000;DP=858;ExcessHet=3.0103;FS=0.660;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=-2.004;QD=6.02;ReadPosRankSum=0.537;SOR=0.794;set=HC	GT:AD:AF:DP	0/1:685,170:0.20:855
chr14	107035140	rs200467136	G	C	2227.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.471;ClippingRankSum=0.000;DB;DP=556;ExcessHet=3.0103;FS=0.757;MLEAC=1;MLEAF=0.500;MQ=59.58;MQRankSum=-9.616;QD=4.03;ReadPosRankSum=1.189;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:465,88:0.16:553
chr14	107035142	rs61732461	G	A	2227.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.689;ClippingRankSum=0.000;DB;DP=544;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.57;MQRankSum=-9.625;QD=4.12;ReadPosRankSum=0.987;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:455,86:0.16:541
chr14	107035163	rs201950873	GA	CC	1390.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.296;ClippingRankSum=0.000;DB;DP=466;ExcessHet=3.0103;FS=0.813;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.51;MQRankSum=-10.338;QD=3.00;ReadPosRankSum=-0.234;SOR=0.910;set=HC	GT:AD:AF:DP	0/1:401,62:0.13:463
chr14	107035168	.	T	A	1202.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.818;ClippingRankSum=0.000;DP=446;ExcessHet=3.0103;FS=4.200;MLEAC=1;MLEAF=0.500;MQ=59.49;MQRankSum=-10.805;QD=2.72;ReadPosRankSum=-0.105;SOR=1.070;set=HC	GT:AD:AF:DP	0/1:388,55:0.12:443
chr14	107035182	.	T	G	565.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.966;ClippingRankSum=0.000;DP=397;ExcessHet=3.0103;FS=8.681;MLEAC=1;MLEAF=0.500;MQ=59.44;MQRankSum=-10.979;QD=1.44;ReadPosRankSum=-1.466;SOR=1.372;set=HC	GT:AD:AF:DP	0/1:349,45:0.11:394
chr14	107035206	.	CA	TG	242.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.739;ClippingRankSum=0.000;DP=277;ExcessHet=3.0103;FS=22.489;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.20;MQRankSum=-12.413;QD=0.88;ReadPosRankSum=-2.601;SOR=3.026;set=HC	GT:AD:AF:DP	0/1:252,24:0.09:276
chr14	107035212	.	G	A	139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.723;ClippingRankSum=0.000;DP=247;ExcessHet=3.0103;FS=20.310;MLEAC=1;MLEAF=0.500;MQ=59.18;MQRankSum=-12.770;QD=0.57;ReadPosRankSum=-2.560;SOR=3.147;set=HC	GT:AD:AF:DP	0/1:227,19:0.08:246
chr14	107048690	rs201933735	G	A	474.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.426;ClippingRankSum=0.000;DB;DP=562;ExcessHet=3.0103;FS=7.129;MLEAC=1;MLEAF=0.500;MQ=56.83;MQRankSum=-14.940;QD=0.85;ReadPosRankSum=-7.552;SOR=1.503;set=HC	GT:AD:AF:DP	0/1:485,76:0.14:561
chr14	107048767	rs200617568	G	T	5803.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.993;ClippingRankSum=0.000;DB;DP=1394;ExcessHet=3.0103;FS=3.716;MLEAC=1;MLEAF=0.500;MQ=51.82;MQRankSum=-15.095;QD=4.17;ReadPosRankSum=0.860;SOR=1.034;set=HC	GT:AD:AF:DP	0/1:1010,383:0.27:1393
chr14	107048885	rs200064890	C	T	4103.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.707;ClippingRankSum=0.000;DB;DP=648;ExcessHet=3.0103;FS=0.570;MLEAC=1;MLEAF=0.500;MQ=47.05;MQRankSum=-8.326;QD=6.43;ReadPosRankSum=-0.495;SOR=0.742;set=HC	GT:AD:AF:DP	0/1:418,220:0.34:638
chr14	107048929	rs35608607	T	C	1288.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.231;ClippingRankSum=0.000;DB;DP=215;ExcessHet=3.0103;FS=31.371;MLEAC=1;MLEAF=0.500;MQ=43.99;MQRankSum=-0.418;QD=6.02;ReadPosRankSum=-2.639;SOR=2.559;set=HC	GT:AD:AF:DP	0/1:162,52:0.24:214
chr14	107048939	rs199574916	T	C	834.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.326;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=56.592;MLEAC=1;MLEAF=0.500;MQ=42.25;MQRankSum=1.779;QD=5.32;ReadPosRankSum=-3.684;SOR=4.476;set=HC	GT:AD:AF:DP	0/1:128,29:0.18:157
chr14	107048944	rs35850880	A	T	1189.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.213;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=20.877;MLEAC=1;MLEAF=0.500;MQ=40.92;MQRankSum=-0.963;QD=8.44;ReadPosRankSum=0.152;SOR=1.635;set=HC	GT:AD:AF:DP	0/1:90,51:0.36:141
chr14	107078567	rs2516904	T	C	5498.77	.	AC=1;AF=0.500;AN=2;DB;DP=697;set=Intersection	GT:AD:AF:DP	0/1:422,267:0.39:689
chr14	107078790	rs1858692	C	T	17275.77	.	AC=2;AF=1.00;AN=2;DB;DP=647;set=Intersection	GT:AD:AF:DP	1/1:0,639:1.00:639
chr14	107082871	rs144729059	A	ATGC	2667.73	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr14	107082879	rs59681319	C	CG	2437.73	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.82;QD=45.14;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr14	107082880	.	T	G	367	.	AC=2;AF=1.00;AN=2;BRF=0.56;FR=1.0000;HP=1;HapScore=2;MGOF=9;MMLQ=20;MQ=55.88;NF=13;NR=10;PP=367;QD=17.468313589;SC=GATGAGAAGCTTGATATATAT;SbPval=0.45;Source=Platypus;TC=30;TCF=18;TCR=12;TR=23;WE=107082905;WS=107082861;set=Platypus	GT:AD:AF:DP	1/1:7,23:0.77:30
chr14	107082881	rs59072447	T	TA,TTAG	2437.73	.	AC=2,0;AF=1.00,0.00;ALERT;AN=2;DB;DP=53;set=Intersection	GT:AF:DP	1/1:1.00:53
chr14	107082882	rs61261254	G	GA	2437.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.78;QD=45.99;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr14	107082889	rs4043174	A	ATTT	2174.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr14	107082897	rs2337902	T	A	2174.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr14	107113780	rs200164853	G	A	1869.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.002;ClippingRankSum=0.000;DB;DP=521;ExcessHet=3.0103;FS=0.757;MLEAC=1;MLEAF=0.500;MQ=59.41;MQRankSum=-12.060;QD=3.60;ReadPosRankSum=-5.608;SOR=0.791;set=HC	GT:AD:AF:DP	0/1:437,82:0.16:519
chr14	107113785	rs201264785	C	T	1988.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.883;ClippingRankSum=0.000;DB;DP=554;ExcessHet=3.0103;FS=0.731;MLEAC=1;MLEAF=0.500;MQ=59.45;MQRankSum=-11.819;QD=3.60;ReadPosRankSum=-4.662;SOR=0.802;set=HC	GT:AD:AF:DP	0/1:462,90:0.16:552
chr14	107113846	rs201523378	A	G	7155.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.193;ClippingRankSum=0.000;DB;DP=932;ExcessHet=3.0103;FS=0.622;MLEAC=1;MLEAF=0.500;MQ=59.67;MQRankSum=-9.312;QD=7.69;ReadPosRankSum=4.024;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:711,219:0.24:930
chr14	107113851	rs2072045	C	T	7448.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.753;ClippingRankSum=0.000;DB;DP=946;ExcessHet=3.0103;FS=1.115;MLEAC=1;MLEAF=0.500;MQ=59.68;MQRankSum=4.308;QD=7.89;ReadPosRankSum=-2.689;SOR=0.596;set=HC	GT:AD:AF:DP	0/1:557,387:0.41:944
chr14	107113855	rs111637096	A	G	7428.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.295;ClippingRankSum=0.000;DB;DP=970;ExcessHet=3.0103;FS=1.312;MLEAC=1;MLEAF=0.500;MQ=59.69;MQRankSum=-9.253;QD=7.67;ReadPosRankSum=4.788;SOR=0.800;set=HC	GT:AD:AF:DP	0/1:738,230:0.24:968
chr14	107113858	rs111853090	A	G	7499.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.596;ClippingRankSum=0.000;DB;DP=978;ExcessHet=3.0103;FS=0.612;MLEAC=1;MLEAF=0.500;MQ=59.69;MQRankSum=-9.146;QD=7.68;ReadPosRankSum=4.407;SOR=0.790;set=HC	GT:AD:AF:DP	0/1:740,236:0.24:976
chr14	107113968	rs113324720	C	A	2069.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.688;ClippingRankSum=0.000;DB;DP=812;ExcessHet=3.0103;FS=11.452;MLEAC=1;MLEAF=0.500;MQ=58.04;MQRankSum=-4.323;QD=2.56;ReadPosRankSum=1.799;SOR=0.885;set=HC	GT:AD:AF:DP	0/1:648,160:0.20:808
chr14	107114009	rs11846079	T	C	13793.77	.	AC=1;AF=0.500;AN=2;DB;DP=959;set=Intersection	GT:AD:AF:DP	0/1:376,573:0.60:949
chr14	107114193	rs2073670	A	G	11019.77	.	AC=1;AF=0.500;AN=2;DB;DP=791;set=Intersection	GT:AD:AF:DP	0/1:282,501:0.64:783
chr14	107131063	rs2583286	A	G	1812.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:231,105:0.31:336
chr14	107131128	rs10143945	G	T	760.77	.	AC=1;AF=0.500;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	0/1:361,71:0.16:432
chr14	107131246	rs141606676	C	T	395.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.396;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=3.778;MLEAC=1;MLEAF=0.500;MQ=45.36;MQRankSum=-7.628;QD=2.08;ReadPosRankSum=0.643;SOR=0.401;set=HC	GT:AD:AF:DP	0/1:160,30:0.16:190
chr14	107131290	rs149638514	T	C	1661.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.052;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=29.712;MLEAC=1;MLEAF=0.500;MQ=41.75;MQRankSum=-4.316;QD=13.85;ReadPosRankSum=1.437;SOR=2.495;set=HC	GT:AD:AF:DP	0/1:74,46:0.38:120
chr14	107131300	rs34376395	T	C	1758.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.476;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=23.171;MLEAC=1;MLEAF=0.500;MQ=40.68;MQRankSum=-2.604;QD=16.14;ReadPosRankSum=0.598;SOR=2.433;set=HC	GT:AD:AF:DP	0/1:61,48:0.44:109
chr14	107170005	rs1141720	T	C	5978.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.952;ClippingRankSum=0.000;DB;DP=1240;ExcessHet=3.0103;FS=1.212;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=4.85;ReadPosRankSum=-1.649;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:869,363:0.29:1232
chr14	107170055	rs8009570	G	A	19988.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.877;ClippingRankSum=0.000;DB;DP=1320;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.19;ReadPosRankSum=0.853;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:775,541:0.41:1316
chr14	107170062	rs55891010	A	G	20022.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.148;ClippingRankSum=0.000;DB;DP=1317;ExcessHet=3.0103;FS=0.527;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.25;ReadPosRankSum=0.636;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:768,545:0.42:1313
chr14	107170077	rs11845244	C	T	10541.77	.	AC=1;AF=0.500;AN=2;DB;DP=1292;set=Intersection	GT:AD:AF:DP	0/1:744,542:0.42:1286
chr14	107170219	rs2187989	C	G	5370.77	.	AC=1;AF=0.500;AN=2;DB;DP=534;set=Intersection	GT:AD:AF:DP	0/1:284,244:0.46:528
chr14	107170398	rs4448834	C	T	3562.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:58,150:0.72:208
chr14	107170410	rs10220412	G	C	1643.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:107,75:0.41:182
chr14	107178795	rs10144331	A	G	7997.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr14	107178832	rs10144402	A	G	8880.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:1,311:1.00:312
chr14	107178941	rs10133751	T	A	2109.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.811;ClippingRankSum=0.000;DB;DP=633;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=3.39;ReadPosRankSum=-0.681;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:480,143:0.23:623
chr14	107178965	rs2073669	A	C	9481.77	.	AC=1;AF=0.500;AN=2;DB;DP=604;set=Intersection	GT:AD:AF:DP	0/1:178,423:0.70:601
chr14	107179017	rs61732209	A	G	1897.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.230;ClippingRankSum=0.000;DB;DP=526;ExcessHet=3.0103;FS=0.615;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.62;ReadPosRankSum=0.102;SOR=0.617;set=HC	GT:AD:AF:DP	0/1:398,126:0.24:524
chr14	107179106	rs10144703	C	T	1744.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.862;ClippingRankSum=0.000;DB;DP=414;ExcessHet=3.0103;FS=2.046;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.30;ReadPosRankSum=0.849;SOR=0.544;set=HC	GT:AD:AF:DP	0/1:303,103:0.25:406
chr14	107179268	rs10144801	A	G	3189.77	.	AC=1;AF=0.500;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	0/1:221,161:0.42:382
chr14	107198866	rs1987970	T	G	4429.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr14	107211211	rs2073668	G	A	9793.77	.	AC=1;AF=0.500;AN=2;DB;DP=733;set=Intersection	GT:AD:AF:DP	0/1:288,439:0.60:727
chr14	107259782	rs201707042	A	G	538.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.111;ClippingRankSum=0.000;DB;DP=276;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.34;MQRankSum=-10.705;QD=1.97;ReadPosRankSum=1.031;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:242,31:0.11:273
chr14	107259787	rs199655081	A	C	565.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.565;ClippingRankSum=0.000;DB;DP=260;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.30;MQRankSum=-10.361;QD=2.20;ReadPosRankSum=1.667;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:226,31:0.12:257
chr14	107259830	rs78693499	A	G	786.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.836;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.71;MQRankSum=-9.129;QD=4.35;ReadPosRankSum=3.767;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:148,33:0.18:181
chr14	107259850	rs78504059	G	A	964.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.022;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=0.823;MLEAC=1;MLEAF=0.500;MQ=58.51;MQRankSum=-7.670;QD=6.84;ReadPosRankSum=1.658;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:110,31:0.22:141
chr14	107259865	rs76113443	A	C	920.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.897;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=0.930;MLEAC=1;MLEAF=0.500;MQ=58.24;MQRankSum=-7.091;QD=7.80;ReadPosRankSum=0.301;SOR=0.518;set=HC	GT:AD:AF:DP	0/1:90,28:0.24:118
chr14	107259887	rs72692489	G	A	779.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.833;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=2.453;MLEAC=1;MLEAF=0.500;MQ=58.09;MQRankSum=-6.438;QD=8.57;ReadPosRankSum=-1.912;SOR=0.390;set=HC	GT:AD:AF:DP	0/1:67,24:0.26:91
chr14	107259908	rs72692491	A	G	213.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.835;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=1.834;MLEAC=1;MLEAF=0.500;MQ=58.97;MQRankSum=-4.952;QD=3.82;ReadPosRankSum=0.266;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:46,10:0.18:56
chr14	107282809	rs201928713	T	C	144.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.961;ClippingRankSum=0.000;DB;DP=438;ExcessHet=3.0103;FS=13.344;MLEAC=1;MLEAF=0.500;MQ=59.36;MQRankSum=-17.497;QD=0.34;ReadPosRankSum=0.270;SOR=2.690;set=HC	GT:AD:AF:DP	0/1:399,33:0.08:432
chr14	107282813	rs199801132	CA	AG	246.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.172;ClippingRankSum=0.000;DB;DP=437;ExcessHet=3.0103;FS=15.618;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.34;MQRankSum=-17.660;QD=0.57;ReadPosRankSum=0.521;SOR=2.859;set=HC	GT:AD:AF:DP	0/1:396,35:0.08:431
chr14	107282846	rs200859769	G	A	1877.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.176;ClippingRankSum=0.000;DB;DP=467;ExcessHet=3.0103;FS=9.616;MLEAC=1;MLEAF=0.500;MQ=59.05;MQRankSum=-13.955;QD=4.06;ReadPosRankSum=0.457;SOR=1.559;set=HC	GT:AD:AF:DP	0/1:389,73:0.16:462
chr14	107282852	rs201336503	T	C	1965.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.254;ClippingRankSum=0.000;DB;DP=457;ExcessHet=3.0103;FS=9.149;MLEAC=1;MLEAF=0.500;MQ=59.03;MQRankSum=-13.352;QD=4.35;ReadPosRankSum=0.444;SOR=1.441;set=HC	GT:AD:AF:DP	0/1:375,77:0.17:452
chr14	107282859	rs201095197	G	A	1961.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.496;ClippingRankSum=0.000;DB;DP=470;ExcessHet=3.0103;FS=10.859;MLEAC=1;MLEAF=0.500;MQ=59.09;MQRankSum=-13.248;QD=4.22;ReadPosRankSum=1.994;SOR=1.614;set=HC	GT:AD:AF:DP	0/1:387,78:0.17:465
chr14	107282872	rs61741319	T	A	541.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.199;ClippingRankSum=0.000;DB;DP=495;ExcessHet=3.0103;FS=21.641;MLEAC=1;MLEAF=0.500;MQ=58.93;MQRankSum=-13.889;QD=1.16;ReadPosRankSum=4.231;SOR=2.775;set=HC	GT:AD:AF:DP	0/1:412,56:0.12:468
chr14	107282909	rs202202987	T	C	1534.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.716;ClippingRankSum=0.000;DB;DP=568;ExcessHet=3.0103;FS=1.384;MLEAC=1;MLEAF=0.500;MQ=58.69;MQRankSum=-15.128;QD=2.70;ReadPosRankSum=2.980;SOR=0.592;set=HC	GT:AD:AF:DP	0/1:451,117:0.21:568
chr14	107282910	rs201114243	G	A	3030.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.379;ClippingRankSum=0.000;DB;DP=574;ExcessHet=3.0103;FS=0.559;MLEAC=1;MLEAF=0.500;MQ=58.70;MQRankSum=5.185;QD=5.28;ReadPosRankSum=-0.158;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:395,179:0.31:574
chr14	107282926	rs149038822	A	T	2924.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.544;ClippingRankSum=0.000;DB;DP=595;ExcessHet=3.0103;FS=2.274;MLEAC=1;MLEAF=0.500;MQ=58.71;MQRankSum=-15.525;QD=4.92;ReadPosRankSum=2.531;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:477,117:0.20:594
chr14	107282935	rs201762529	A	T	2828.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.401;ClippingRankSum=0.000;DB;DP=618;ExcessHet=3.0103;FS=4.397;MLEAC=1;MLEAF=0.500;MQ=58.81;MQRankSum=-15.630;QD=4.58;ReadPosRankSum=2.907;SOR=0.786;set=HC	GT:AD:AF:DP	0/1:503,114:0.18:617
chr14	107282988	.	C	G	361.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.687;ClippingRankSum=0.000;DP=573;ExcessHet=3.0103;FS=11.032;MLEAC=1;MLEAF=0.500;MQ=59.26;MQRankSum=-17.861;QD=0.64;ReadPosRankSum=-2.396;SOR=1.934;set=HC	GT:AD:AF:DP	0/1:515,51:0.09:566
chr14	107282994	.	G	C	325.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.050;ClippingRankSum=0.000;DP=543;ExcessHet=3.0103;FS=16.174;MLEAC=1;MLEAF=0.500;MQ=59.24;MQRankSum=-18.775;QD=0.60;ReadPosRankSum=-2.649;SOR=2.563;set=HC	GT:AD:AF:DP	0/1:496,43:0.08:539
chr14	107282996	.	G	A	235.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.507;ClippingRankSum=0.000;DP=547;ExcessHet=3.0103;FS=16.108;MLEAC=1;MLEAF=0.500;MQ=59.25;MQRankSum=-19.339;QD=0.43;ReadPosRankSum=-2.512;SOR=2.718;set=HC	GT:AD:AF:DP	0/1:502,41:0.08:543
chr14	107283002	.	A	G	115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.727;ClippingRankSum=0.000;DP=544;ExcessHet=3.0103;FS=18.781;MLEAC=1;MLEAF=0.500;MQ=59.25;MQRankSum=-20.381;QD=0.21;ReadPosRankSum=-2.894;SOR=3.236;set=HC	GT:AD:AF:DP	0/1:503,37:0.07:540
chr15	20170150	rs10431885	C	T	6119.77	.	AC=1;AF=0.500;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	0/1:142,258:0.65:400
chr15	20230038	rs200882580	A	G	365.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.821;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=1.907;MLEAC=1;MLEAF=0.500;MQ=51.33;MQRankSum=-3.045;QD=3.93;ReadPosRankSum=-1.220;SOR=0.465;set=HC	GT:AD:AF:DP	0/1:67,26:0.28:93
chr15	20279438	rs55830676	C	T	286.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.158;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=49.69;MQRankSum=-4.494;QD=2.22;ReadPosRankSum=0.310;SOR=0.774;set=HC	GT:AD:AF:DP	0/1:102,27:0.21:129
chr15	20279469	.	A	G	264.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.801;ClippingRankSum=0.000;DP=126;ExcessHet=3.0103;FS=2.870;MLEAC=1;MLEAF=0.500;MQ=49.63;MQRankSum=-5.180;QD=2.10;ReadPosRankSum=1.821;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:100,26:0.21:126
chr15	20433755	rs4114043	G	A	1749.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:71,74:0.51:145
chr15	20434090	rs4401027	G	T	4002.77	.	AC=1;AF=0.500;AN=2;DB;DP=639;set=Intersection	GT:AD:AF:DP	0/1:409,221:0.35:630
chr15	20444794	rs2722084	C	T	1973.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.774;ClippingRankSum=0.000;DB;DP=1007;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.13;MQRankSum=-15.816;QD=1.99;ReadPosRankSum=-1.226;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:814,180:0.18:994
chr15	20446043	rs1823751	T	A	4424.77	.	AC=1;AF=0.500;AN=2;DB;DP=783;set=Intersection	GT:AD:AF:DP	0/1:523,252:0.33:775
chr15	20447987	rs8024775	A	G	253.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:58,14:0.19:72
chr15	20448056	rs8024950	A	G	425.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:221,41:0.16:262
chr15	20448077	rs3963874	T	C	5147.77	.	AC=1;AF=0.500;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	0/1:163,230:0.59:393
chr15	20448164	rs55697731	T	C	110.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.374;ClippingRankSum=0.000;DB;DP=878;ExcessHet=3.0103;FS=1.861;MLEAC=1;MLEAF=0.500;MQ=52.23;MQRankSum=-2.776;QD=0.13;ReadPosRankSum=0.474;SOR=1.053;set=HC	GT:AD:AF:DP	0/1:771,103:0.12:874
chr15	20448306	rs12593272	G	A	808.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.062;ClippingRankSum=0.000;DB;DP=228;ExcessHet=3.0103;FS=0.659;MLEAC=1;MLEAF=0.500;MQ=59.62;MQRankSum=0.574;QD=3.56;ReadPosRankSum=-0.191;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:178,49:0.22:227
chr15	20450242	rs2444187	G	C	6321.77	.	AC=1;AF=0.500;AN=2;DB;DP=997;set=Intersection	GT:AD:AF:DP	0/1:640,344:0.35:984
chr15	20450376	rs59373601	G	A	1788.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.762;ClippingRankSum=0.000;DB;DP=617;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.000;QD=2.96;ReadPosRankSum=0.193;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:472,133:0.22:605
chr15	20450433	rs60793038	G	T	561.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.440;ClippingRankSum=0.000;DB;DP=270;ExcessHet=3.0103;FS=1.540;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.08;ReadPosRankSum=-0.043;SOR=0.828;set=HC	GT:AD:AF:DP	0/1:224,46:0.17:270
chr15	20453896	rs2601517	G	C	773.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:111,42:0.27:153
chr15	20453913	rs2601516	C	T	883.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:120,54:0.31:174
chr15	20454025	rs4931913	A	G	282.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.945;ClippingRankSum=0.000;DB;DP=224;ExcessHet=3.0103;FS=19.945;MLEAC=1;MLEAF=0.500;MQ=56.47;MQRankSum=-2.900;QD=1.27;ReadPosRankSum=2.336;SOR=1.418;set=HC	GT:AD:AF:DP	0/1:193,30:0.13:223
chr15	20454100	rs12324192	TT	AA	848.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.008;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=57.77;MQRankSum=3.031;QD=7.72;ReadPosRankSum=-1.067;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:82,28:0.25:110
chr15	20454162	rs4931914	C	A	297.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:32,14:0.30:46
chr15	20456517	rs12593833	T	C	242.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:44,18:0.29:62
chr15	20456640	rs8041606	A	G	370.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.035;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.59;MQRankSum=-10.888;QD=2.13;ReadPosRankSum=-1.326;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:140,34:0.20:174
chr15	20456665	rs8026258	T	A	1128.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.620;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=3.305;MLEAC=1;MLEAF=0.500;MQ=58.25;MQRankSum=-12.070;QD=5.97;ReadPosRankSum=-1.387;SOR=1.053;set=HC	GT:AD:AF:DP	0/1:150,39:0.21:189
chr15	20456673	rs8033709	C	G	1268.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.014;ClippingRankSum=0.000;DB;DP=205;ExcessHet=3.0103;FS=4.109;MLEAC=1;MLEAF=0.500;MQ=58.39;MQRankSum=-12.043;QD=6.19;ReadPosRankSum=-0.620;SOR=1.044;set=HC	GT:AD:AF:DP	0/1:163,42:0.20:205
chr15	20456677	rs8037872	G	A	1341.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.046;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=2.138;MLEAC=1;MLEAF=0.500;MQ=58.51;MQRankSum=-11.492;QD=6.48;ReadPosRankSum=-0.562;SOR=0.876;set=HC	GT:AD:AF:DP	0/1:164,43:0.21:207
chr15	20456682	rs58201907	G	C	45.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.588;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=2.747;MLEAC=1;MLEAF=0.500;MQ=58.44;MQRankSum=-8.741;QD=0.21;ReadPosRankSum=-0.010;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:188,26:0.12:214
chr15	20456740	rs2954579	A	G	4428.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:70,202:0.74:272
chr15	20456787	rs60265308	C	T	383.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.596;ClippingRankSum=0.000;DB;DP=247;ExcessHet=3.0103;FS=1.326;MLEAC=1;MLEAF=0.500;MQ=58.76;MQRankSum=-3.795;QD=1.55;ReadPosRankSum=0.199;SOR=0.554;set=HC	GT:AD:AF:DP	0/1:204,43:0.17:247
chr15	20457155	rs11856094	A	C	829.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.951;ClippingRankSum=0.000;DB;DP=282;ExcessHet=3.0103;FS=6.079;MLEAC=1;MLEAF=0.500;MQ=57.97;MQRankSum=-11.150;QD=2.95;ReadPosRankSum=1.477;SOR=1.189;set=HC	GT:AD:AF:DP	0/1:225,56:0.20:281
chr15	20457157	rs11854770	C	T	3878.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.998;ClippingRankSum=0.000;DB;DP=294;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.82;MQRankSum=-7.737;QD=13.24;ReadPosRankSum=-0.071;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:157,136:0.46:293
chr15	20457244	rs2060872	G	C	2275.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.844;ClippingRankSum=0.000;DB;DP=690;ExcessHet=3.0103;FS=2.136;MLEAC=1;MLEAF=0.500;MQ=54.73;MQRankSum=-2.512;QD=3.30;ReadPosRankSum=0.021;SOR=0.518;set=HC	GT:AD:AF:DP	0/1:528,161:0.23:689
chr15	20457291	rs6599891	T	C	15988.77	.	AC=1;AF=0.500;AN=2;DB;DP=940;set=Intersection	GT:AD:AF:DP	0/1:253,683:0.73:936
chr15	20457319	rs8038741	C	A	3776.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.806;ClippingRankSum=0.000;DB;DP=1031;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.12;MQRankSum=-7.539;QD=3.68;ReadPosRankSum=0.399;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:776,250:0.24:1026
chr15	20462690	rs6422224	T	G	8503.77	.	AC=1;AF=0.500;AN=2;DB;DP=526;set=Intersection	GT:AD:AF:DP	0/1:147,377:0.72:524
chr15	20462792	rs62009635	T	G	233.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.137;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=3.718;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=3.878;QD=1.46;ReadPosRankSum=-1.734;SOR=0.335;set=HC	GT:AD:AF:DP	0/1:141,19:0.12:160
chr15	20462793	rs77195941	ATTT	A	223.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.620;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=1.148;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=4.197;QD=1.44;ReadPosRankSum=-0.818;SOR=0.435;set=HC	GT:AD:AF:DP	0/1:139,16:0.10:155
chr15	20462810	rs28679605	T	A	429.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.595;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=0.000;QD=3.98;ReadPosRankSum=0.011;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:81,27:0.25:108
chr15	20464736	rs200136673	CA	C	889.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.523;ClippingRankSum=0.000;DB;DP=376;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=0.000;QD=2.75;ReadPosRankSum=-0.703;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:207,116:0.36:323
chr15	20464860	rs7177447	G	T	4125.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:124,168:0.58:292
chr15	20465167	rs10794632	A	T	257.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.882;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=0.884;MLEAC=1;MLEAF=0.500;MQ=59.42;MQRankSum=-2.066;QD=1.36;ReadPosRankSum=3.394;SOR=0.838;set=HC	GT:AD:AF:DP	0/1:170,20:0.11:190
chr15	20465178	rs2722114	A	T	241.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.167;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=0.721;MLEAC=1;MLEAF=0.500;MQ=59.50;MQRankSum=1.386;QD=1.41;ReadPosRankSum=-0.606;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:139,33:0.19:172
chr15	20465181	rs67892369	T	TA	633.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.012;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=1.373;MLEAC=1;MLEAF=0.500;MQ=59.49;MQRankSum=-1.410;QD=3.60;ReadPosRankSum=0.051;SOR=0.731;set=HC	GT:AD:AF:DP	0/1:132,44:0.25:176
chr15	20465182	rs10794633	T	A	299.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.345;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=0.900;MLEAC=1;MLEAF=0.500;MQ=59.64;MQRankSum=-2.735;QD=1.71;ReadPosRankSum=2.698;SOR=0.882;set=HC	GT:AD:AF:DP	0/1:155,20:0.11:175
chr15	20465278	rs71466665	G	A	239.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.215;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.52;MQRankSum=0.831;QD=3.63;ReadPosRankSum=-0.370;SOR=0.526;set=HC	GT:AD:AF:DP	0/1:50,16:0.24:66
chr15	20466352	rs4983837	T	C	1446.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:104,67:0.39:171
chr15	20466516	rs4983836	C	T	3028.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:127,136:0.52:263
chr15	20466604	rs4983834	A	G	344.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:33,12:0.27:45
chr15	20476906	rs4983827	T	C	460.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.228;ClippingRankSum=0.000;DB;DP=614;ExcessHet=3.0103;FS=0.894;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=0.76;ReadPosRankSum=1.726;SOR=0.774;set=HC	GT:AD:AF:DP	0/1:528,81:0.13:609
chr15	20476942	rs4983659	C	T	125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.160;ClippingRankSum=0.000;DB;DP=1126;ExcessHet=3.0103;FS=2.013;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=0.11;ReadPosRankSum=-1.552;SOR=1.001;set=HC	GT:AD:AF:DP	0/1:994,120:0.11:1114
chr15	20477005	rs4248783	G	C	14706.77	.	AC=1;AF=0.500;AN=2;DB;DP=2291;set=Intersection	GT:AD:AF:DP	0/1:1488,787:0.35:2275
chr15	20477090	rs4931940	T	C	1001.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.609;ClippingRankSum=0.000;DB;DP=1861;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.54;ReadPosRankSum=0.147;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:1595,251:0.14:1846
chr15	20481817	rs61468854	CA	C	220.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.287;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=7.608;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.87;ReadPosRankSum=1.632;SOR=1.967;set=HC	GT:AD:AF:DP	0/1:63,14:0.18:77
chr15	20482021	rs28602347	C	G	505.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.146;ClippingRankSum=0.000;DB;DP=633;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.57;MQRankSum=0.695;QD=0.81;ReadPosRankSum=0.077;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:538,89:0.14:627
chr15	20482083	rs28576026	G	A	629.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.898;ClippingRankSum=0.000;DB;DP=563;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.74;MQRankSum=-5.267;QD=1.13;ReadPosRankSum=1.433;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:474,85:0.15:559
chr15	20482111	rs11629632	G	A	284.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.740;ClippingRankSum=0.000;DB;DP=424;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=0.705;QD=0.68;ReadPosRankSum=-0.076;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:362,59:0.14:421
chr15	20482115	rs28702675	A	G	555.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.356;ClippingRankSum=0.000;DB;DP=412;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=-0.768;QD=1.36;ReadPosRankSum=-0.626;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:341,68:0.17:409
chr15	20482142	rs60748331	A	C	285.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.388;ClippingRankSum=0.000;DB;DP=310;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.82;MQRankSum=-0.854;QD=0.93;ReadPosRankSum=-0.784;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:260,47:0.15:307
chr15	20614036	rs11454064	A	AT	1882.73	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:179,115:0.39:294
chr15	20874846	rs7497024	G	A	2838.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.196;ClippingRankSum=0.000;DB;DP=753;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=0.000;QD=3.83;ReadPosRankSum=-1.019;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:551,190:0.26:741
chr15	20874897	rs7497658	A	G	18296.77	.	AC=1;AF=0.500;AN=2;DB;DP=1085;set=Intersection	GT:AD:AF:DP	0/1:242,830:0.77:1072
chr15	20875055	rs7496378	C	G	1055.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.371;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=0.707;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.98;ReadPosRankSum=-0.902;SOR=0.791;set=HC	GT:AD:AF:DP	0/1:157,55:0.26:212
chr15	20875100	rs7497715	A	G	216.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.990;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=1.226;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.21;ReadPosRankSum=0.981;SOR=0.933;set=HC	GT:AD:AF:DP	0/1:82,16:0.16:98
chr15	20875126	rs7497743	A	G	152.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.742;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=1.645;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.46;ReadPosRankSum=-0.204;SOR=0.298;set=HC	GT:AD:AF:DP	0/1:51,11:0.18:62
chr15	20876423	rs10902996	A	G	125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.553;ClippingRankSum=0.000;DB;DP=626;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.21;ReadPosRankSum=1.775;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:541,71:0.12:612
chr15	20876515	rs6422240	A	G	18198.77	.	AC=1;AF=0.500;AN=2;DB;DP=1075;set=Intersection	GT:AD:AF:DP	0/1:275,793:0.74:1068
chr15	21145503	rs74912473	G	T	208.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:13,10:0.43:23
chr15	21145789	rs76524194	C	T	3225.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;MQ=59.94;set=Intersection	GT:AD:AF:DP	0/1:170,96:0.36:266
chr15	21145805	rs79921246	A	G	3060.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:120,84:0.41:204
chr15	22156928	rs150801989	G	C	2536.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.126;ClippingRankSum=0.000;DB;DP=367;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=0.000;QD=7.05;ReadPosRankSum=-2.330;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:223,137:0.38:360
chr15	22318824	rs35131467	AC	A	2065.73	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:51,63:0.55:114
chr15	22318963	rs1429506	A	T	18018.77	.	AC=2;AF=1.00;AN=2;DB;DP=678;set=Intersection	GT:AD:AF:DP	1/1:0,673:1.00:673
chr15	22319166	rs1429505	G	T	5220.77	.	AC=1;AF=0.500;AN=2;DB;DP=768;set=Intersection	GT:AD:AF:DP	0/1:493,271:0.35:764
chr15	22319174	rs6602966	T	C	6920.77	.	AC=1;AF=0.500;AN=2;DB;DP=797;set=Intersection	GT:AD:AF:DP	0/1:456,336:0.42:792
chr15	22319177	.	G	A	2345.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.660;ClippingRankSum=0.000;DP=812;ExcessHet=3.0103;FS=2.173;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=0.744;QD=2.91;ReadPosRankSum=0.541;SOR=0.862;set=HC	GT:AD:AF:DP	0/1:633,174:0.22:807
chr15	22319253	rs6602967	A	G	5915.77	.	AC=1;AF=0.500;AN=2;DB;DP=741;set=Intersection	GT:AD:AF:DP	0/1:443,294:0.40:737
chr15	22319295	rs4779264	T	C	4639.77	.	AC=1;AF=0.500;AN=2;DB;DP=540;set=Intersection	GT:AD:AF:DP	0/1:319,218:0.41:537
chr15	22319389	rs8025521	T	A	3133.77	.	AC=1;AF=0.500;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	0/1:234,139:0.37:373
chr15	22319410	rs8029027	G	A	3967.77	.	AC=1;AF=0.500;AN=2;DB;DP=470;set=Intersection	GT:AD:AF:DP	0/1:284,183:0.39:467
chr15	22319445	rs6602968	G	A	6039.77	.	AC=1;AF=0.500;AN=2;DB;DP=767;set=Intersection	GT:AD:AF:DP	0/1:452,308:0.41:760
chr15	22319483	rs995427	G	A	1571.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.651;ClippingRankSum=0.000;DB;DP=1012;ExcessHet=3.0103;FS=0.700;MLEAC=1;MLEAF=0.500;MQ=58.52;MQRankSum=5.275;QD=1.57;ReadPosRankSum=-0.812;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:830,174:0.17:1004
chr15	22319497	rs1366875	G	C	1573.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.336;ClippingRankSum=0.000;DB;DP=1044;ExcessHet=3.0103;FS=0.707;MLEAC=1;MLEAF=0.500;MQ=58.61;MQRankSum=5.449;QD=1.52;ReadPosRankSum=-0.499;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:862,173:0.17:1035
chr15	22332751	rs930109	T	C	17913.77	.	AC=2;AF=1.00;AN=2;DB;DP=675;set=Intersection	GT:AD:AF:DP	1/1:0,653:1.00:653
chr15	22332859	rs62004745	G	T	6442.77	.	AC=1;AF=0.500;AN=2;DB;DP=774;set=Intersection	GT:AD:AF:DP	0/1:443,321:0.42:764
chr15	22344871	rs28571003	A	G	1474.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.290;ClippingRankSum=0.000;DB;DP=673;ExcessHet=3.0103;FS=0.669;MLEAC=1;MLEAF=0.500;MQ=56.02;MQRankSum=1.822;QD=2.21;ReadPosRankSum=-0.881;SOR=0.815;set=HC	GT:AD:AF:DP	0/1:536,131:0.20:667
chr15	22344879	rs1366870	C	G	19795.77	.	AC=2;AF=1.00;AN=2;DB;DP=646;set=Intersection	GT:AD:AF:DP	1/1:0,641:1.00:641
chr15	22344951	rs1366871	T	C	10761.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.25;QD=32.41;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,332:1.00:332
chr15	22345097	rs12440831	C	T	6141.77	.	AC=1;AF=0.500;AN=2;DB;DP=579;set=Intersection	GT:AD:AF:DP	0/1:293,284:0.49:577
chr15	22345158	rs1529528	T	C	4433.77	.	AC=1;AF=0.500;AN=2;DB;DP=489;set=Intersection	GT:AD:AF:DP	0/1:267,219:0.45:486
chr15	22345306	rs12438744	A	C	2563.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:191,119:0.38:310
chr15	22368862	rs1835183	G	A	43669.77	.	AC=2;AF=1.00;AN=2;DB;DP=1597;MQ=59.95;set=Intersection	GT:AD:AF:DP	1/1:4,1557:1.00:1561
chr15	22368905	rs1835182	G	A	45616.77	.	AC=2;AF=1.00;AN=2;DB;DP=1670;set=Intersection	GT:AD:AF:DP	1/1:3,1648:1.00:1651
chr15	22369248	rs491208	T	C	25577.77	.	AC=2;AF=1.00;AN=2;DB;DP=876;set=Intersection	GT:AD:AF:DP	1/1:0,875:1.00:875
chr15	22369290	rs12593418	A	G	2786.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.022;ClippingRankSum=0.000;DB;DP=996;ExcessHet=3.0103;FS=0.632;MLEAC=1;MLEAF=0.500;MQ=51.39;MQRankSum=-0.762;QD=2.85;ReadPosRankSum=1.426;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:768,211:0.22:979
chr15	22369426	rs4087943	G	A	2280.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.389;ClippingRankSum=0.000;DB;DP=1027;ExcessHet=3.0103;FS=1.441;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=1.214;QD=2.25;ReadPosRankSum=0.047;SOR=0.918;set=HC	GT:AD:AF:DP	0/1:816,199:0.20:1015
chr15	22382655	rs535034	A	C	1822.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:145,80:0.36:225
chr15	22382704	rs62006708	G	C	1420.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.946;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=1.277;MLEAC=1;MLEAF=0.500;MQ=46.24;MQRankSum=-0.658;QD=8.56;ReadPosRankSum=-0.356;SOR=0.829;set=HC	GT:AD:AF:DP	0/1:108,58:0.35:166
chr15	22382728	rs2808136	C	T	1731.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.539;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=2.685;MLEAC=1;MLEAF=0.500;MQ=45.34;MQRankSum=0.998;QD=9.11;ReadPosRankSum=-0.721;SOR=0.922;set=HC	GT:AD:AF:DP	0/1:118,72:0.38:190
chr15	22382739	rs2671839	A	G	6722.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr15	22382821	rs12438969	G	C	5551.77	.	AC=1;AF=0.500;AN=2;DB;DP=606;set=Intersection	GT:AD:AF:DP	0/1:340,264:0.44:604
chr15	22382897	rs62006710	A	G	4368.77	.	AC=1;AF=0.500;AN=2;DB;DP=666;set=Intersection	GT:AD:AF:DP	0/1:434,230:0.35:664
chr15	22383064	rs12441468	C	A	3270.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.027;ClippingRankSum=0.000;DB;DP=415;ExcessHet=3.0103;FS=1.112;MLEAC=1;MLEAF=0.500;MQ=58.56;MQRankSum=-3.051;QD=8.00;ReadPosRankSum=-0.264;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:245,164:0.40:409
chr15	22383064	.	CTA	ATG	2091	.	AC=1;AF=0.500;AN=2;BRF=0.42;FR=0.5000;HP=3;HapScore=1;MGOF=8;MMLQ=26;MQ=58.2;NF=65;NR=57;PP=2091;QD=17.5776055317;SC=GGTGGAGCTTCTAATGGTCTT;SbPval=0.46;Source=Platypus;TC=308;TCF=169;TCR=139;TR=122;WE=22383074;WS=22383054;set=Platypus	GT:AD:AF:DP	1/0:186,122:0.40:308
chr15	22383066	rs559754	A	G	9034.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.112;ClippingRankSum=0.000;DB;DP=417;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.60;MQRankSum=-5.627;QD=22.04;ReadPosRankSum=-0.255;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:147,263:0.64:410
chr15	22383189	rs1820851	G	A	1045.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.613;ClippingRankSum=0.000;DB;DP=534;ExcessHet=3.0103;FS=1.485;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.99;ReadPosRankSum=-0.492;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:430,95:0.18:525
chr15	22383482	rs3841636	GA	G	2220.73	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:83,67:0.45:150
chr15	22413700	rs267612	A	G	2490.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:104,92:0.47:196
chr15	22413825	rs267613	C	T	387.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.577;ClippingRankSum=0.000;DB;DP=851;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.31;MQRankSum=-0.660;QD=0.46;ReadPosRankSum=-0.937;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:732,108:0.13:840
chr15	22413954	rs1810247	C	T	3543.77	.	AC=1;AF=0.500;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	0/1:223,157:0.41:380
chr15	22414005	rs59278647	C	T	3737.77	.	AC=1;AF=0.500;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	0/1:251,167:0.40:418
chr15	22414190	rs28695837	T	C	11342.77	.	AC=1;AF=0.500;AN=2;DB;DP=1381;set=Intersection	GT:AD:AF:DP	0/1:796,566:0.42:1362
chr15	22414393	rs200221521	C	CA	1142.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.440;ClippingRankSum=0.000;DB;DP=238;ExcessHet=3.0103;FS=4.014;MLEAC=1;MLEAF=0.500;MQ=59.83;MQRankSum=0.000;QD=6.05;ReadPosRankSum=0.907;SOR=1.153;set=HC	GT:AD:AF:DP	0/1:94,95:0.50:189
chr15	22440816	rs4505267	A	G	4116.77	.	AC=1;AF=0.500;AN=2;DB;DP=547;set=Intersection	GT:AD:AF:DP	0/1:327,213:0.39:540
chr15	22448436	rs62007810	G	A	10279.77	.	AC=1;AF=0.500;AN=2;DB;DP=1424;set=Intersection	GT:AD:AF:DP	0/1:875,536:0.38:1411
chr15	22466002	rs4779314	C	T	3946.77	.	AC=1;AF=0.500;AN=2;DB;DP=512;set=Intersection	GT:AD:AF:DP	0/1:313,195:0.38:508
chr15	22466126	rs1985064	A	C	28689.77	.	AC=1;AF=0.500;AN=2;DB;DP=1551;set=Intersection	GT:AD:AF:DP	0/1:324,1199:0.79:1523
chr15	22466392	rs199822529	G	A	4502.73	.	AC=1;AF=0.500;AN=2;DB;DP=638;set=Intersection	GT:AD:AF:DP	0/1:399,231:0.37:630
chr15	22482858	rs1807224	A	G	16108.77	.	AC=1;AF=0.500;AN=2;DB;DP=1279;set=Intersection	GT:AD:AF:DP	0/1:499,752:0.60:1251
chr15	22483277	rs753259	A	G	1884.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:39,81:0.68:120
chr15	22489826	.	A	T	75.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.461;ClippingRankSum=0.000;DP=55;ExcessHet=3.0103;FS=4.095;MLEAC=1;MLEAF=0.500;MQ=59.06;MQRankSum=-5.846;QD=1.38;ReadPosRankSum=-1.465;SOR=1.688;set=HC	GT:AD:AF:DP	0/1:49,6:0.11:55
chr15	22489842	rs368258155	G	C	111.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.314;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=3.258;MLEAC=1;MLEAF=0.500;MQ=59.26;MQRankSum=-5.667;QD=1.60;ReadPosRankSum=-0.362;SOR=1.267;set=HC	GT:AD:AF:DP	0/1:62,8:0.11:70
chr15	22489847	rs372456640	C	A	90.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.064;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=3.377;MLEAC=1;MLEAF=0.500;MQ=59.35;MQRankSum=-6.094;QD=1.13;ReadPosRankSum=0.603;SOR=1.426;set=HC	GT:AD:AF:DP	0/1:72,8:0.10:80
chr15	22489900	rs113115466	T	C	61.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.751;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=1.028;MLEAC=1;MLEAF=0.500;MQ=59.63;MQRankSum=-5.778;QD=0.45;ReadPosRankSum=1.481;SOR=0.852;set=HC	GT:AD:AF:DP	0/1:123,15:0.11:138
chr15	22489921	rs76846225	G	A	42.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.716;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=0.999;MLEAC=1;MLEAF=0.500;MQ=59.78;MQRankSum=-5.126;QD=0.28;ReadPosRankSum=1.168;SOR=0.890;set=HC	GT:AD:AF:DP	0/1:139,16:0.10:155
chr15	22489958	rs111826301	C	T	171.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.707;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=-2.910;QD=1.19;ReadPosRankSum=-1.172;SOR=0.615;set=HC	GT:AD:AF:DP	0/1:129,15:0.10:144
chr15	22489966	rs72687799	A	C	164.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.439;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.24;ReadPosRankSum=-2.057;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:119,14:0.11:133
chr15	22835964	.	C	T	689.77	.	AC=1;AF=0.500;AN=2;DP=46;set=Intersection	GT:AD:AF:DP	0/1:26,19:0.42:45
chr15	22835982	rs145308777	G	A	685.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:30,20:0.40:50
chr15	22862067	rs371870854	CT	C	48.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.210;ClippingRankSum=-0.000;DB;DP=20;ExcessHet=3.0103;FS=2.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.75;ReadPosRankSum=-2.166;SOR=0.204;set=HC	GT:AD:AF:DP	0/1:7,6:0.46:13
chr15	22869804	rs2251602	A	G	743.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:92,44:0.32:136
chr15	22925851	rs4134802	C	T	2724.77	.	AC=1;AF=0.500;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	0/1:313,139:0.31:452
chr15	22926229	rs2289824	G	A	7301.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr15	22926307	rs7403459	A	G	10204.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	1/1:0,383:1.00:383
chr15	22927952	rs2289823	C	T	655.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:62,32:0.34:94
chr15	22928533	rs12148589	G	C	611.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:89,39:0.30:128
chr15	22928537	rs79791617	G	C	2095.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:39,90:0.70:129
chr15	22929905	rs2305094	CA	GG	5549.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr15	22933456	rs56238917	G	T	46.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:7,3:0.30:10
chr15	22933528	rs2084063	G	A	825.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.798;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=11.139;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.51;ReadPosRankSum=-0.007;SOR=0.905;set=HC	GT:AD:AF:DP	0/1:26,40:0.61:66
chr15	22933691	rs1109036	G	A	6137.77	.	AC=1;AF=0.500;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	0/1:142,272:0.66:414
chr15	22939192	rs11633474	G	A	3221.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;MQ=60.05;set=Intersection	GT:AD:AF:DP	0/1:53,144:0.73:197
chr15	22939321	rs202081636	CG	C	1786.73	.	AC=1;AF=0.500;AN=2;DB;DP=195;MQ=60.06;set=Intersection	GT:AD:AF:DP	0/1:126,66:0.34:192
chr15	22940670	rs3751566	C	T	1923.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:37,79:0.68:116
chr15	22940866	rs45464395	C	T	1733.77	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:251,108:0.30:359
chr15	22945314	rs8029108	C	T	1301.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr15	22945350	rs141360543	T	TA	132.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.697;ClippingRankSum=-0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=63.21;MQRankSum=3.390;QD=7.37;ReadPosRankSum=1.146;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:8,10:0.56:18
chr15	22945351	rs185003380	T	A	266.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.158;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=63.21;MQRankSum=2.709;QD=14.82;ReadPosRankSum=0.680;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:8,10:0.56:18
chr15	22955013	rs2289816	T	G	1308.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr15	22955307	rs3217548	AC	A	962.73	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:22,33:0.60:55
chr15	22962359	rs72698053	C	T	2834.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:71,126:0.64:197
chr15	22963733	rs72698056	C	T	3022.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:60,124:0.67:184
chr15	22969232	rs7170637	G	A	2439.77	.	AC=1;AF=0.500;AN=2;DB;DP=544;set=Intersection	GT:AD:AF:DP	0/1:390,149:0.28:539
chr15	22991234	rs7171025	C	T	1511.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.117;ClippingRankSum=0.000;DB;DP=332;ExcessHet=3.0103;FS=1.461;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.58;ReadPosRankSum=1.007;SOR=0.596;set=HC	GT:AD:AF:DP	0/1:236,94:0.28:330
chr15	22993170	rs3751568	A	C	284.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:62,20:0.24:82
chr15	22993214	rs3751569	G	T	143.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.522;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.34;ReadPosRankSum=-0.488;SOR=0.854;set=HC	GT:AD:AF:DP	0/1:32,11:0.26:43
chr15	22999940	rs11307802	TG	T	898.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr15	23049369	rs12592629	G	A	871.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:69,44:0.39:113
chr15	23052632	rs11263683	T	C	3462.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr15	23059394	rs1991922	C	T	9408.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	1/1:0,353:1.00:353
chr15	23086364	.	GGCC	G	2479.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.296;ClippingRankSum=0.000;DP=418;ExcessHet=3.0103;FS=1.731;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=3.019;QD=10.33;ReadPosRankSum=2.097;SOR=0.843;set=HC	GT:AD:AF:DP	0/1:166,74:0.31:240
chr15	23131705	rs144278477	CA	C	520.73	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:32,19:0.37:51
chr15	23131745	rs7181884	G	A	2153.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr15	23132075	rs56264744	G	GA	796.73	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:42,51:0.55:93
chr15	23138992	rs202076313	G	A	555.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=30.88;SOR=5.892;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr15	23181922	rs1994761	T	C	785.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.769;ClippingRankSum=0.000;DB;DP=376;ExcessHet=3.0103;FS=18.483;MLEAC=1;MLEAF=0.500;MQ=54.98;MQRankSum=1.269;QD=2.11;ReadPosRankSum=2.031;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:297,76:0.20:373
chr15	23182267	rs12050782	G	A	8153.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:13,307:0.96:320
chr15	23200698	rs58552405	A	T	2011.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.70;QD=28.74;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr15	23259270	rs200991698	A	G	872.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.982;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=7.082;MLEAC=1;MLEAF=0.500;MQ=47.46;MQRankSum=-5.198;QD=8.91;ReadPosRankSum=0.942;SOR=0.267;set=HC	GT:AD:AF:DP	0/1:53,45:0.46:98
chr15	23685004	rs34879341	G	GCAT	11816.73	.	AC=2;AF=1.00;AN=2;DB;DP=276;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.61;QD=44.59;SOR=1.504;set=HC	GT:AD:AF:DP	1/1:0,265:1.00:265
chr15	23685343	rs74203443	T	C	268.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.94;QD=22.40;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr15	23685517	rs372380699	C	T	3109.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.403;ClippingRankSum=0.000;DB;DP=694;ExcessHet=3.0103;FS=1.279;MLEAC=1;MLEAF=0.500;MQ=59.08;MQRankSum=1.700;QD=4.51;ReadPosRankSum=6.014;SOR=0.549;set=HC	GT:AD:AF:DP	0/1:480,209:0.30:689
chr15	23685541	rs375981990	CT	C	31428.73	.	AC=2;AF=1.00;AN=2;DB;DP=765;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.21;QD=41.41;SOR=1.469;set=HC	GT:AD:AF:DP	1/1:0,759:1.00:759
chr15	23685581	rs199662028	C	G	2210.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.104;ClippingRankSum=0.000;DB;DP=789;ExcessHet=3.0103;FS=2.246;MLEAC=1;MLEAF=0.500;MQ=59.23;MQRankSum=-1.727;QD=2.81;ReadPosRankSum=3.527;SOR=0.472;set=HC	GT:AD:AF:DP	0/1:604,182:0.23:786
chr15	23685583	rs368496365	T	C	7332.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.004;ClippingRankSum=0.000;DB;DP=789;ExcessHet=3.0103;FS=2.835;MLEAC=1;MLEAF=0.500;MQ=59.24;MQRankSum=-0.433;QD=9.34;ReadPosRankSum=-8.545;SOR=0.894;set=HC	GT:AD:AF:DP	0/1:549,236:0.30:785
chr15	23685604	.	TC	T	3775.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=5.090;ClippingRankSum=0.000;DP=734;ExcessHet=3.0103;FS=3.793;MLEAC=1;MLEAF=0.500;MQ=59.29;MQRankSum=1.548;QD=5.19;ReadPosRankSum=-12.455;SOR=0.987;set=HC	GT:AD:AF:DP	0/1:521,207:0.28:728
chr15	23685606	.	TCTTCCTGCTCCCACATCTTCTCCTCCTGCTCCCGCATCTTC	T	3459.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.804;ClippingRankSum=0.000;DP=767;ExcessHet=3.0103;FS=3.888;MLEAC=1;MLEAF=0.500;MQ=59.30;MQRankSum=1.360;QD=4.56;ReadPosRankSum=-12.535;SOR=1.054;set=HC	GT:AD:AF:DP	0/1:557,201:0.27:758
chr15	23685639	rs374969803	C	T	8273.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=549;set=Intersection	GT:AD:AF:DP	0/1:201,339:0.63:540
chr15	23685895	rs111853398	C	T	7784.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.347;ClippingRankSum=0.000;DB;DP=982;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.87;MQRankSum=-12.512;QD=7.98;ReadPosRankSum=-0.269;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:542,434:0.44:976
chr15	23685922	.	C	CCCGCATCTTCTCCTCCTGCTT	19428.73	.	AC=1;AF=0.500;AN=2;DP=1127;set=Intersection	GT:AD:AF:DP	0/1:535,431:0.45:966
chr15	23686010	.	T	TCTC	9727.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.195;ClippingRankSum=0.000;DP=1079;ExcessHet=3.0103;FS=10.648;MLEAC=1;MLEAF=0.500;MQ=59.29;MQRankSum=-10.408;QD=10.14;ReadPosRankSum=3.691;SOR=1.440;set=HC	GT:AD:AF:DP	0/1:673,286:0.30:959
chr15	23686019	.	G	C	9009.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.283;ClippingRankSum=0.000;DP=968;ExcessHet=3.0103;FS=10.937;MLEAC=1;MLEAF=0.500;MQ=59.37;MQRankSum=-11.006;QD=9.43;ReadPosRankSum=-0.470;SOR=1.409;set=HC	GT:AD:AF:DP	0/1:692,263:0.28:955
chr15	23686031	rs75983100	T	C	7174.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.496;ClippingRankSum=0.000;DB;DP=903;ExcessHet=3.0103;FS=7.388;MLEAC=1;MLEAF=0.500;MQ=59.36;MQRankSum=-11.960;QD=8.03;ReadPosRankSum=-3.886;SOR=1.226;set=HC	GT:AD:AF:DP	0/1:679,214:0.24:893
chr15	23686045	.	A	ATCTTCTCCTCCTGGCCCCACATCT	6379.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.307;ClippingRankSum=0.000;DP=874;ExcessHet=3.0103;FS=4.290;MLEAC=1;MLEAF=0.500;MQ=59.29;MQRankSum=-14.657;QD=7.37;ReadPosRankSum=-8.433;SOR=1.076;set=HC	GT:AD:AF:DP	0/1:689,177:0.20:866
chr15	23686062	rs202194865	T	C	575.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.284;ClippingRankSum=0.000;DB;DP=737;ExcessHet=3.0103;FS=2.365;MLEAC=1;MLEAF=0.500;MQ=59.31;MQRankSum=-25.023;QD=0.79;ReadPosRankSum=-4.821;SOR=1.056;set=HC	GT:AD:AF:DP	0/1:675,54:0.07:729
chr15	23686067	.	TCTC	T	72.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.951;ClippingRankSum=0.000;DP=762;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.32;MQRankSum=-27.092;QD=0.10;ReadPosRankSum=-2.107;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:706,47:0.06:753
chr15	23686348	.	T	TTCTCCACCTGCTCCCACATCTTCTCCTGCTCCCGCATCCTCTCCTCCTTCTCCCGTAGCCTCTCGTCCTGCTCCCACATCC	1810.73	.	AC=1;AF=0.500;AN=2;DP=174;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=603.58;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:3,0:0:3
chr15	23686598	rs35708006	T	C	10656.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	1/1:0,380:1.00:380
chr15	23686673	rs59122400	G	A	9093.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:0,340:1.00:340
chr15	23686914	rs57504140	T	A	1632.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.390;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=3.616;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.37;ReadPosRankSum=-1.032;SOR=2.336;set=HC	GT:AD:AF:DP	1/1:2,71:0.97:73
chr15	23686924	rs58446506	T	C	2809.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.06;SOR=2.419;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr15	23687812	rs2344891	T	G	5538.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr15	23687818	rs72495057	CT	C	1730.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.403;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=1.891;MLEAC=2;MLEAF=1.000;MQ=60.17;MQRankSum=0.314;QD=17.31;ReadPosRankSum=0.790;SOR=1.412;set=HC	GT:AD:AF:DP	1/1:7,93:0.93:100
chr15	23688944	rs4778531	A	G	5875.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr15	23689510	rs12902150	C	G	6118.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr15	23932467	rs3743340	G	A	145.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:24,9:0.27:33
chr15	24921771	rs1563102	G	C	8712.77	.	AC=1;AF=0.500;AN=2;DB;DP=631;set=Intersection	GT:AD:AF:DP	0/1:238,389:0.62:627
chr15	25222783	rs200156917	C	CA	42.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.735;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.66;ReadPosRankSum=1.362;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:53,12:0.18:65
chr15	25231988	rs59131251	C	G	1243.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:33,48:0.59:81
chr15	25307562	rs7402542	A	G	14165.77	.	AC=2;AF=1.00;AN=2;DB;DP=557;set=Intersection	GT:AD:AF:DP	1/1:0,548:1.00:548
chr15	25310440	rs6576402	A	G	2372.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr15	25319287	.	G	GT	49.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.983;ClippingRankSum=0.000;DP=129;ExcessHet=3.0103;FS=1.109;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.43;ReadPosRankSum=-1.357;SOR=0.855;set=HC	GT:AD:AF:DP	0/1:91,25:0.22:116
chr15	25326425	rs1972694	A	T	7860.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr15	25415693	rs2739837	T	C	1428.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.82;SOR=5.728;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr15	25415693	.	TG	CA,CG	448	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.16;FR=0.5000,0.5000;HP=2;HapScore=2;MGOF=29;MMLQ=28;MQ=60.0;NF=22,31;NR=0,0;PP=448,83;QD=22.7939943119;SC=ATGGTGACCATGGAGGAAGAC;SbPval=1.0;Source=Platypus;TC=33;TCF=33;TCR=0;TR=22,31;WE=25415702;WS=25415692;set=Platypus	GT:AF:DP	0/1:0.67:33
chr15	25415694	rs1883008	G	A	679.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.886;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.42;ReadPosRankSum=0.142;SOR=0.990;set=HC	GT:AD:AF:DP	0/1:9,26:0.74:35
chr15	25415759	rs2714734	G	A	2328.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr15	25415809	rs2739838	C	T	3656.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr15	25415825	rs1883009	C	T	665.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.796;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=2.458;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=0.000;QD=4.16;ReadPosRankSum=-0.372;SOR=0.934;set=HC	GT:AD:AF:DP	0/1:121,39:0.24:160
chr15	25434690	rs72546349	T	G	2430.77	.	AC=1;AF=0.500;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	0/1:255,139:0.35:394
chr15	25434755	rs72486633	A	T	1261.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:157,71:0.31:228
chr15	25434817	rs2714770	T	C	531.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:53,24:0.31:77
chr15	25438493	rs7172888	A	G	2429.77	.	AC=1;AF=0.500;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	0/1:226,129:0.36:355
chr15	25442971	rs143462088	G	T	3096.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:60,126:0.68:186
chr15	25449614	rs2739779	T	G	1678.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:94,84:0.47:178
chr15	25449737	rs2739780	G	A	319.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:48,20:0.29:68
chr15	25455187	rs2739782	A	G	1732.77	.	AC=1;AF=0.500;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	0/1:235,106:0.31:341
chr15	25470422	rs72546393	G	A	1303.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:162,74:0.31:236
chr15	25472438	rs8032143	T	G	1553.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;MQ=59.79;set=Intersection	GT:AD:AF:DP	0/1:172,85:0.33:257
chr15	25476179	rs72546362	A	G	1241.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:113,67:0.37:180
chr15	25479172	rs74005459	C	T	760.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:49,31:0.39:80
chr15	25479337	rs2714758	A	G	4170.77	.	AC=1;AF=0.500;AN=2;DB;DP=695;set=Intersection	GT:AD:AF:DP	0/1:462,230:0.33:692
chr15	25487091	rs150167652	G	A	1067.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:139,62:0.31:201
chr15	25488786	rs2719918	T	G	3235.77	.	AC=1;AF=0.500;AN=2;DB;DP=479;set=Intersection	GT:AD:AF:DP	0/1:292,173:0.37:465
chr15	25490865	rs56319444	G	A	1106.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:120,53:0.31:173
chr15	25494450	rs11856820	G	A	5565.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.027;ClippingRankSum=0.000;DB;DP=441;ExcessHet=3.0103;FS=0.549;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=-2.705;QD=12.74;ReadPosRankSum=-0.551;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:282,155:0.35:437
chr15	25494450	.	GGA	AGG	2944	.	AC=1;AF=0.500;AN=2;BRF=0.4;FR=0.5000;HP=2;HapScore=1;MGOF=10;MMLQ=24;MQ=59.92;NF=49;NR=57;PP=2944;QD=20;SC=ATTTTGGAAGGGAGCGCTGGG;SbPval=0.58;Source=Platypus;TC=304;TCF=143;TCR=161;TR=106;WE=25494460;WS=25494440;set=Platypus	GT:AD:AF:DP	1/0:198,106:0.35:304
chr15	25494452	rs11853765	A	G	5565.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.586;ClippingRankSum=0.000;DB;DP=440;ExcessHet=3.0103;FS=0.539;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=-2.700;QD=12.77;ReadPosRankSum=-0.518;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:281,155:0.36:436
chr15	25494501	rs2739804	A	G	2048.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:207,115:0.36:322
chr15	25494566	rs140298300	G	A	1123.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:62,50:0.45:112
chr15	25523705	rs1977036	C	T	85.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.986;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=2.183;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.82;ReadPosRankSum=-1.373;SOR=0.200;set=HC	GT:AD:AF:DP	0/1:38,9:0.19:47
chr15	25584556	rs17115485	A	G	149.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:7,7:0.50:14
chr15	25620975	rs71418040	TATC	T	1782.73	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:93,50:0.35:143
chr15	25650695	rs35086186	C	CA	336.73	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:50,26:0.34:76
chr15	25652101	rs8032479	C	G	1030.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr15	25652326	rs8179187	T	G	6727.77	.	AC=1;AF=0.500;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	0/1:120,302:0.72:422
chr15	25937004	rs2066705	C	T	10719.77	.	AC=2;AF=1.00;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	1/1:2,401:1.00:403
chr15	25953068	rs2291355	G	A	1652.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr15	25961964	rs10873607	A	G	10395.77	.	AC=2;AF=1.00;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	1/1:0,394:1.00:394
chr15	25963599	rs8024374	A	G	3628.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr15	25967085	rs1564828	T	C	8007.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr15	25972202	rs33946132	C	CAAAA	792.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.917;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=9.294;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=39.64;ReadPosRankSum=-1.272;SOR=5.549;set=HC	GT:AD:AF:DP	1/1:2,18:0.90:20
chr15	25981190	rs7173593	A	G	4287.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr15	25981367	rs7177724	C	T	742.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr15	26026139	rs8038726	A	G	57.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.164;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.65;ReadPosRankSum=-0.046;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:28,7:0.20:35
chr15	26260450	rs12440137	C	T	4129.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.85;SOR=1.688;set=HC	GT:AD:AF:DP	1/1:0,122:1.00:122
chr15	26260456	rs370137954	CT	C	131.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.115;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=2.043;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.05;ReadPosRankSum=-1.053;SOR=0.991;set=HC	GT:AD:AF:DP	0/1:93,33:0.26:126
chr15	26260477	rs12437822	T	C	5528.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.89;SOR=1.204;set=HC	GT:AD:AF:DP	1/1:0,185:1.00:185
chr15	26828328	rs375967621	GTC	G	65.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.166;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=4.946;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.27;ReadPosRankSum=-1.399;SOR=0.042;set=HC	GT:AD:AF:DP	0/1:24,5:0.17:29
chr15	26866738	rs45542840	C	T	1509.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr15	26887814	rs754186	A	G	7136.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.66;SOR=2.194;set=HC	GT:AD:AF:DP	1/1:0,258:1.00:258
chr15	26887879	rs754185	T	C	4209.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr15	27018187	.	TGCC	T	733.73	.	AC=2;AF=1.00;AN=2;DP=28;MQ=60.77;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr15	27019040	rs4906901	C	A	1694.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr15	27061412	rs12910508	T	C	598.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:8,25:0.76:33
chr15	27061564	.	G	GA	513.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.524;ClippingRankSum=0.000;DP=136;ExcessHet=3.0103;FS=1.573;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.14;ReadPosRankSum=-1.037;SOR=0.764;set=HC	GT:AD:AF:DP	0/1:81,43:0.35:124
chr15	27182357	rs140682	T	C	16130.77	.	AC=2;AF=1.00;AN=2;DB;DP=601;set=Intersection	GT:AD:AF:DP	1/1:0,593:1.00:593
chr15	27184435	rs12910925	C	T	6910.77	.	AC=1;AF=0.500;AN=2;DB;DP=484;set=Intersection	GT:AD:AF:DP	0/1:166,315:0.65:481
chr15	27184482	rs34560927	C	T	5960.77	.	AC=1;AF=0.500;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	0/1:152,266:0.64:418
chr15	27184517	rs17647384	G	A	4233.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:116,184:0.61:300
chr15	27188335	rs140683	T	A	894.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:89,50:0.36:139
chr15	27188353	rs140684	C	A	5596.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr15	27188459	rs140685	C	T	5275.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:109,239:0.69:348
chr15	27216746	rs2288694	C	T	1021.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:96,56:0.37:152
chr15	27271789	rs35270520	G	T	1408.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:173,75:0.30:248
chr15	27516740	rs76888516	GAGTC	G	5110.73	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:71,128:0.64:199
chr15	27772676	rs140679	C	T	8650.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr15	27772892	rs2303879	G	A	2585.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr15	27890491	rs1871017	G	T	2805.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:72,127:0.64:199
chr15	27890571	rs5811500	GT	G	1635.73	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:32,46:0.59:78
chr15	27890589	rs1871018	A	G	1615.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:27,41:0.60:68
chr15	28096453	rs8025804	A	G	73.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.456;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=1.827;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.72;ReadPosRankSum=-0.246;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:34,9:0.21:43
chr15	28096538	rs1800419	A	G	490.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.612;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.21;ReadPosRankSum=1.483;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:117,36:0.24:153
chr15	28116173	rs12594397	C	T	379.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.605;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.58;ReadPosRankSum=0.868;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:49,19:0.28:68
chr15	28116275	rs7175046	G	C	2550.77	.	AC=1;AF=0.500;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	0/1:279,147:0.35:426
chr15	28171147	rs2594928	T	C	101.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:16,7:0.30:23
chr15	28195534	rs11632387	C	T	1201.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:18,50:0.74:68
chr15	28196821	rs7173419	T	C	1976.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:35,78:0.69:113
chr15	28200408	rs7170989	T	C	2083.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:45,96:0.68:141
chr15	28211758	rs4778218	A	G	459.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:13,19:0.59:32
chr15	28211921	rs1800411	G	A	1011.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:19,46:0.71:65
chr15	28228644	rs12910433	G	A	3174.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:67,140:0.68:207
chr15	28230097	rs1900758	C	T	1003.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:16,37:0.70:53
chr15	28231793	rs10852218	T	C	4682.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:90,208:0.70:298
chr15	28235773	rs1800404	C	T	1633.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:201,92:0.31:293
chr15	28267533	rs113044747	G	GTGGGTGAGAA	502.73	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:31,14:0.31:45
chr15	28273350	rs2290100	T	C	221.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:12,11:0.48:23
chr15	28356859	rs1129038	C	T	1076.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:16,45:0.74:61
chr15	28357230	rs4778245	T	C	2491.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr15	28359744	rs7495441	G	A	1251.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr15	28360081	rs7497014	T	C	801.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr15	28360888	rs5811542	C	CT	1629.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr15	28361764	rs4778247	C	T	999.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr15	28362459	rs7495875	G	A	6988.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr15	28370389	rs61585051	C	T	1092.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:77,55:0.42:132
chr15	28375872	rs6416603	A	G	1588.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr15	28377196	rs10627923	C	CCT	4371.73	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr15	28377772	rs8025035	C	T	1023.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:18,35:0.66:53
chr15	28378122	rs4778141	T	G	724.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr15	28386626	rs11636232	C	T	5140.77	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:115,228:0.66:343
chr15	28397812	rs7165158	A	G	91.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.441;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.91;ReadPosRankSum=1.035;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:38,10:0.21:48
chr15	28414665	rs7494786	T	C	1358.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr15	28419566	rs201182375	T	C	99.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.310;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=1.456;MLEAC=1;MLEAF=0.500;MQ=59.45;MQRankSum=-3.243;QD=1.45;ReadPosRankSum=0.000;SOR=1.007;set=HC	GT:AD:AF:DP	0/1:58,11:0.16:69
chr15	28419619	rs141441362	C	T	321.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.136;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=4.725;MLEAC=1;MLEAF=0.500;MQ=59.27;MQRankSum=-2.907;QD=1.89;ReadPosRankSum=0.598;SOR=0.383;set=HC	GT:AD:AF:DP	0/1:136,34:0.20:170
chr15	28419695	rs149592795	T	C	435.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.205;ClippingRankSum=0.000;DB;DP=199;ExcessHet=3.0103;FS=1.410;MLEAC=1;MLEAF=0.500;MQ=58.34;MQRankSum=-0.714;QD=2.21;ReadPosRankSum=-1.822;SOR=0.883;set=HC	GT:AD:AF:DP	0/1:157,40:0.20:197
chr15	28422609	rs61756153	C	T	2697.77	.	AC=1;AF=0.500;AN=2;DB;DP=545;set=Intersection	GT:AD:AF:DP	0/1:380,160:0.30:540
chr15	28422819	rs58164482	C	T	727.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:61,35:0.36:96
chr15	28441817	rs2525936	G	T	669.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:14,27:0.66:41
chr15	28443658	rs8041209	G	T	708.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:71,36:0.34:107
chr15	28491744	.	T	TA	48.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.609;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=3.531;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.52;ReadPosRankSum=-0.479;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:24,8:0.25:32
chr15	28502279	rs11631797	A	G	5228.77	.	AC=1;AF=0.500;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	0/1:127,225:0.64:352
chr15	28510895	rs2240202	G	A	2114.77	.	AC=1;AF=0.500;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	0/1:250,118:0.32:368
chr15	28517258	.	C	G	445.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.453;ClippingRankSum=0.000;DP=22;ExcessHet=3.0103;FS=2.262;MLEAC=1;MLEAF=0.500;MQ=52.49;MQRankSum=-3.028;QD=20.26;ReadPosRankSum=-0.360;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:10,12:0.55:22
chr15	28517261	rs374453464	G	A	439.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.665;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=2.291;MLEAC=1;MLEAF=0.500;MQ=52.72;MQRankSum=-3.274;QD=18.32;ReadPosRankSum=0.525;SOR=0.160;set=HC	GT:AD:AF:DP	0/1:12,12:0.50:24
chr15	28517282	.	TG	GC	754.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.246;ClippingRankSum=0.000;DP=42;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=55.45;MQRankSum=-3.078;QD=20.40;ReadPosRankSum=-0.199;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:17,20:0.54:37
chr15	28517287	.	T	A	919.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.501;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=1.317;MLEAC=1;MLEAF=0.500;MQ=55.95;MQRankSum=-3.142;QD=21.90;ReadPosRankSum=0.303;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:20,22:0.52:42
chr15	28517291	.	T	C	945.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.756;ClippingRankSum=0.000;DP=53;ExcessHet=3.0103;FS=1.217;MLEAC=1;MLEAF=0.500;MQ=56.42;MQRankSum=-3.123;QD=19.70;ReadPosRankSum=0.363;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:23,25:0.52:48
chr15	28517295	.	A	G	939.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.883;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=1.210;MLEAC=1;MLEAF=0.500;MQ=57.36;MQRankSum=-2.980;QD=19.18;ReadPosRankSum=1.535;SOR=0.409;set=HC	GT:AD:AF:DP	0/1:26,23:0.47:49
chr15	28517303	.	T	G	963.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.164;ClippingRankSum=0.000;DP=64;ExcessHet=3.0103;FS=2.327;MLEAC=1;MLEAF=0.500;MQ=57.78;MQRankSum=-3.127;QD=16.34;ReadPosRankSum=1.860;SOR=0.407;set=HC	GT:AD:AF:DP	0/1:33,26:0.44:59
chr15	28517305	.	T	A	957.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.961;ClippingRankSum=0.000;DP=63;ExcessHet=3.0103;FS=2.408;MLEAC=1;MLEAF=0.500;MQ=57.74;MQRankSum=-3.082;QD=16.51;ReadPosRankSum=1.931;SOR=0.347;set=HC	GT:AD:AF:DP	0/1:32,26:0.45:58
chr15	28517310	rs199951842	G	A	957.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.366;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=2.244;MLEAC=1;MLEAF=0.500;MQ=57.91;MQRankSum=-3.215;QD=15.70;ReadPosRankSum=2.484;SOR=0.438;set=HC	GT:AD:AF:DP	0/1:35,26:0.43:61
chr15	28517436	rs75181529	T	C	1637.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:142,89:0.39:231
chr15	28517539	rs80340439	G	A	1232.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.939;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=9.125;MLEAC=1;MLEAF=0.500;MQ=58.85;MQRankSum=-5.041;QD=6.77;ReadPosRankSum=-3.790;SOR=1.371;set=HC	GT:AD:AF:DP	0/1:135,47:0.26:182
chr15	28517546	rs79819039	G	C	1012.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.664;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=12.061;MLEAC=1;MLEAF=0.500;MQ=58.62;MQRankSum=-5.980;QD=6.53;ReadPosRankSum=-2.859;SOR=1.816;set=HC	GT:AD:AF:DP	0/1:124,31:0.20:155
chr15	28517555	rs112104080	T	TC	377.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.658;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=22.138;MLEAC=1;MLEAF=0.500;MQ=58.48;MQRankSum=-6.757;QD=2.84;ReadPosRankSum=-2.517;SOR=3.112;set=HC	GT:AD:AF:DP	0/1:111,22:0.17:133
chr15	28517577	rs141410978	C	T	55.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.083;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=13.130;MLEAC=1;MLEAF=0.500;MQ=58.64;MQRankSum=-9.300;QD=0.63;ReadPosRankSum=-3.007;SOR=3.331;set=HC	GT:AD:AF:DP	0/1:80,8:0.09:88
chr15	28517969	rs2016277	A	G	100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.229;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.30;ReadPosRankSum=0.898;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:9,7:0.44:16
chr15	28518102	rs75893088	C	T	121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.845;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.69;MQRankSum=-5.357;QD=2.21;ReadPosRankSum=-0.114;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:48,7:0.13:55
chr15	28518112	rs200859595	C	A	123.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.167;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.64;MQRankSum=-5.249;QD=2.34;ReadPosRankSum=-1.867;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:46,7:0.13:53
chr15	28518114	.	TC	T	117.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.201;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.64;MQRankSum=-5.249;QD=2.22;ReadPosRankSum=-2.182;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:46,7:0.13:53
chr15	28518217	.	C	G	193	.	AC=1;AF=0.500;AN=2;BRF=0.34;FR=0.5000;HP=1;HapScore=4;MGOF=40;MMLQ=28;MQ=57.05;NF=0;NR=3;PP=193;QD=75.9237375157;SC=TACAATCACACTAACACATTT;SbPval=1.0;Source=Platypus;TC=15;TCF=3;TCR=12;TR=3;WE=28518252;WS=28518207;set=Platypus	GT:AD:AF:DP	0/1:12,3:0.20:15
chr15	28518244	.	A	C	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.981;ClippingRankSum=-0.000;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.19;MQRankSum=-1.068;QD=5.82;ReadPosRankSum=1.465;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:5,2:0.29:7
chr15	28518259	.	T	C	127	.	AC=1;AF=0.500;AN=2;BRF=0.0;FR=0.5000;HP=4;HapScore=4;MGOF=57;MMLQ=28;MQ=56.03;NF=0;NR=2;PP=127;QD=80.8856062736;SC=AAGGATGTATTTTTAATATTT;SbPval=1.0;Source=Platypus;TC=5;TCF=0;TCR=5;TR=2;WE=28518294;WS=28518249;set=Platypus	GT:AD:AF:DP	1/0:3,2:0.40:5
chr15	28518272	.	G	A	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.22;MQRankSum=-0.431;QD=17.59;ReadPosRankSum=-0.000;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:1,2:0.67:3
chr15	28769191	.	GGGT	G	495.73	.	AC=2;AF=1.00;AN=2;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.56;QD=38.13;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr15	29008641	rs372586219	GCCCCTCCATGGATCACCGGCA	G	2143.73	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:29,54:0.65:83
chr15	29008851	rs145357312	C	T	560.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.632;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=10.880;MLEAC=1;MLEAF=0.500;MQ=48.84;MQRankSum=-7.145;QD=7.19;ReadPosRankSum=0.343;SOR=2.023;set=HC	GT:AD:AF:DP	0/1:53,25:0.32:78
chr15	29009050	rs112804410	A	AC	13918.73	.	AC=1;AF=0.500;AN=2;DB;DP=698;set=Intersection	GT:AD:AF:DP	0/1:285,407:0.59:692
chr15	29009311	rs142374134	A	G	1476.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:108,77:0.42:185
chr15	29043336	rs11630550	C	T	764.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:8,33:0.80:41
chr15	29043486	rs11630596	C	T	826.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:22,41:0.65:63
chr15	29043511	rs1877706	T	G	687.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:14,30:0.68:44
chr15	29052021	rs4036877	A	T	1468.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:39,61:0.61:100
chr15	29347019	rs8040932	T	C	1244.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:142,74:0.34:216
chr15	29368221	rs2279498	A	G	1278.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:83,63:0.43:146
chr15	29385149	rs4779760	A	G	1365.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr15	29385204	rs4779761	A	G	3772.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr15	29386593	rs8037972	G	A	2559.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr15	29390858	rs57100286	G	A	701.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:81,41:0.34:122
chr15	29390915	rs59616706	C	T	314.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:42,19:0.31:61
chr15	29394009	rs73370275	C	T	1858.77	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:233,105:0.31:338
chr15	29398781	rs3816857	C	T	96.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.249;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=1.183;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.27;ReadPosRankSum=0.572;SOR=0.863;set=HC	GT:AD:AF:DP	0/1:63,13:0.17:76
chr15	29399148	rs2306935	G	T	452.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:72,27:0.27:99
chr15	29415560	rs3751562	G	A	18116.77	.	AC=2;AF=1.00;AN=2;DB;DP=676;set=Intersection	GT:AD:AF:DP	1/1:0,673:1.00:673
chr15	29415698	rs3751563	A	G	10364.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	1/1:0,376:1.00:376
chr15	29416901	rs2279482	A	G	3905.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:109,182:0.63:291
chr15	29417099	rs12438521	G	C	4255.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr15	29417146	rs2279481	G	A	1677.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.057;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.22;ReadPosRankSum=-1.051;SOR=0.536;set=HC	GT:AD:AF:DP	0/1:21,43:0.67:64
chr15	29417146	.	GTG	ATC	1349	.	AC=1;AF=0.500;AN=2;BRF=0.36;FR=0.5000;HP=2;HapScore=1;MGOF=26;MMLQ=24;MQ=60.0;NF=5;NR=27;PP=1349;QD=43.8271210894;SC=CAGGCCTGCCGTGGGTCAAGT;SbPval=0.51;Source=Platypus;TC=54;TCF=8;TCR=46;TR=32;WE=29417156;WS=29417136;set=Platypus	GT:AD:AF:DP	1/0:22,32:0.59:54
chr15	29417148	rs2279480	G	C	1677.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.844;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=1.348;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.50;ReadPosRankSum=-0.727;SOR=0.467;set=HC	GT:AD:AF:DP	0/1:21,40:0.66:61
chr15	29418520	rs2256273	C	T	299.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:37,17:0.31:54
chr15	29418573	rs2672680	AT	GC	725.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;JOINED;set=Intersection	GT:AD:AF:DP	0/1:53,22:0.29:75
chr15	29418745	rs968476	G	T	374.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:74,27:0.27:101
chr15	29428556	rs8023368	C	G	2265.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr15	29444130	rs59230279	GC	G	3591.73	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr15	29544523	rs11071669	A	C	2054.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:170,105:0.38:275
chr15	29544656	rs4583203	T	C	3059.77	.	AC=1;AF=0.500;AN=2;DB;DP=453;set=Intersection	GT:AD:AF:DP	0/1:274,171:0.38:445
chr15	29862654	rs111717681	C	G	294.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr15	30008856	rs7166878	C	A	4946.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr15	30008889	rs2229518	G	A	5268.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:2,193:0.99:195
chr15	30010328	rs72143374	TA	T	284.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.914;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=4.184;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.110;QD=2.69;ReadPosRankSum=1.354;SOR=1.236;set=HC	GT:AD:AF:DP	0/1:67,39:0.37:106
chr15	30011427	rs11073215	C	T	856.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr15	30018553	rs4073316	A	T	6901.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr15	30033645	rs145191256	G	GA	2468.73	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:81,147:0.64:228
chr15	30064495	rs1383315	C	T	913.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr15	30069920	rs34542662	AT	A	1431.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr15	30070198	rs1904812	A	C	1683.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr15	30336803	.	G	A	847.77	.	AC=1;AF=0.500;AN=2;DP=81;set=Intersection	GT:AD:AF:DP	0/1:43,36:0.46:79
chr15	30700159	rs62016504	A	G	1100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.076;ClippingRankSum=0.000;DB;DP=457;ExcessHet=3.0103;FS=5.370;MLEAC=1;MLEAF=0.500;MQ=57.96;MQRankSum=-18.291;QD=2.41;ReadPosRankSum=1.917;SOR=1.238;set=HC	GT:AD:AF:DP	0/1:396,60:0.13:456
chr15	30700168	.	C	CTTG	932.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.692;ClippingRankSum=0.000;DP=425;ExcessHet=3.0103;FS=4.276;MLEAC=1;MLEAF=0.500;MQ=57.94;MQRankSum=-17.565;QD=2.20;ReadPosRankSum=4.979;SOR=1.205;set=HC	GT:AD:AF:DP	0/1:374,50:0.12:424
chr15	30700263	rs2564642	T	C	3641.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr15	30700278	rs62016505	C	T	2512.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr15	30927867	rs141692578	A	G	4222.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr15	31048067	rs116457401	T	C	703.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.66;QD=41.40;SOR=2.712;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr15	31048088	rs61998400	T	C	903.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.43;QD=36.15;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr15	31048241	rs11633095	A	G	1853.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr15	31060115	rs4779494	T	C	1272.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:198,80:0.29:278
chr15	31119861	rs3829484	G	A	785.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:13,35:0.73:48
chr15	31129037	rs11070624	G	A	2944.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:81,132:0.62:213
chr15	31197564	rs4779794	G	A	4276.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:100,184:0.65:284
chr15	31203093	rs3794594	C	T	882.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:20,36:0.64:56
chr15	31218164	rs2959037	T	C	1754.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:66,83:0.56:149
chr15	31220709	rs61136501	T	TTGTG	1286.73	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:34,39:0.53:73
chr15	31221745	rs10152143	C	A	406.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:6,15:0.71:21
chr15	31229420	rs2955795	T	C	2063.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:60,100:0.62:160
chr15	31233220	rs2955792	C	T	1021.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr15	31233352	rs3840035	GTGAC	G	2294.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.727;ClippingRankSum=0.000;DB;DP=267;ExcessHet=3.0103;FS=4.871;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.669;QD=8.73;ReadPosRankSum=-0.962;SOR=1.035;set=HC	GT:AD:AF:DP	0/1:193,70:0.27:263
chr15	31234981	rs11293	G	A	140.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:12,8:0.40:20
chr15	31235005	rs3512	G	C	219.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:12,11:0.48:23
chr15	31235357	rs2293319	C	T	665.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr15	31238783	rs11637469	T	C	954.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:107,50:0.32:157
chr15	31244083	rs2955790	T	G	2847.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:75,132:0.64:207
chr15	31244263	rs2955789	C	T	5459.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr15	31245880	rs1404467	C	T	792.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr15	31246840	rs34294266	A	G	111.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.100;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=1.970;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.30;ReadPosRankSum=-2.666;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:18,8:0.31:26
chr15	31251333	rs11340006	GA	G	1662.73	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:47,101:0.68:148
chr15	31251366	rs2949573	G	A	1674.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:35,73:0.68:108
chr15	31267147	rs1133642	C	T	1406.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:32,62:0.66:94
chr15	31283844	rs28564430	T	C	416.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:32,20:0.38:52
chr15	31294702	rs61734298	G	T	2209.77	.	AC=1;AF=0.500;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	0/1:204,113:0.36:317
chr15	31330280	rs2288242	A	G	6098.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr15	31339151	rs11636121	A	C	1547.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr15	31341461	rs10851487	G	A	1623.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr15	31341516	rs2288241	C	T	3790.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr15	31341642	rs377520227	A	G	1367.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:85,64:0.43:149
chr15	31342744	rs1035705	C	T	8485.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chr15	31354775	rs374335070	C	G	718.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:79,37:0.32:116
chr15	31357138	rs919001	A	G	3187.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr15	31359457	rs3784599	T	G	4161.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr15	31362352	rs2241493	C	T	3235.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr15	31368915	rs2241497	C	G	1957.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr15	31369123	rs4779816	A	G	7911.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr15	31369223	rs4779817	C	T	7229.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr15	31369258	rs4779818	C	T	5233.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr15	31373727	rs4779504	T	C	1162.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr15	31453147	rs75638145	G	A	2666.77	.	AC=1;AF=0.500;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	0/1:268,152:0.36:420
chr15	31515933	rs28718174	G	C	4159.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:123,185:0.60:308
chr15	31521505	rs3835087	CGG	C	2929.73	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:6,81:0.93:87
chr15	31523008	rs2304507	T	C	3130.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:86,146:0.63:232
chr15	31619607	rs11537749	G	A	751.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:18,35:0.66:53
chr15	31776210	rs199744400	TGGC	T	2413.73	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.98;QD=43.10;SOR=2.066;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr15	31779595	rs62004065	G	A	4185.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr15	31779838	rs16956777	C	G	4123.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:2,144:0.99:146
chr15	31793930	rs7164569	A	G	1500.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:123,81:0.40:204
chr15	31862437	rs12915326	C	T	1056.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.371;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=4.882;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.39;ReadPosRankSum=-0.736;SOR=1.222;set=HC	GT:AD:AF:DP	0/1:106,37:0.26:143
chr15	31862448	rs1459198	C	T	887.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.032;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=11.001;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.40;ReadPosRankSum=-0.026;SOR=1.759;set=HC	GT:AD:AF:DP	0/1:90,30:0.25:120
chr15	31862529	rs12898674	G	A	143.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:25,10:0.29:35
chr15	31930149	rs7168828	C	T	444.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.186;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=3.926;MLEAC=1;MLEAF=0.500;MQ=59.57;MQRankSum=-3.786;QD=3.56;ReadPosRankSum=-0.285;SOR=0.374;set=HC	GT:AD:AF:DP	0/1:92,33:0.26:125
chr15	31942001	rs71476547	G	A	288.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:52,20:0.28:72
chr15	31942073	rs12904841	T	C	161.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:35,11:0.24:46
chr15	32393486	rs201765366	C	CTT	1581.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.278;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=2.684;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.07;ReadPosRankSum=1.964;SOR=0.893;set=HC	GT:AD:AF:DP	0/1:37,94:0.72:131
chr15	32393660	rs151204095	A	AAG	791.73	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:28,22:0.44:50
chr15	32393663	rs28650375	C	A	1825.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr15	32450062	rs199927660	C	T	609.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.61;QD=27.72;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr15	32450704	rs201822909	G	A	1226.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.954;ClippingRankSum=0.000;DB;DP=260;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=48.00;MQRankSum=-6.442;QD=4.77;ReadPosRankSum=0.120;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:176,81:0.32:257
chr15	32926076	rs11632524	C	T	354.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr15	32984196	rs6494593	A	G	655.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr15	33068888	.	CTT	C	235.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.068;ClippingRankSum=0.000;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.21;ReadPosRankSum=-0.464;SOR=0.483;set=HC	GT:AD:AF:DP	0/1:38,18:0.32:56
chr15	33069187	rs191490694	G	A	843.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:81,42:0.34:123
chr15	33091079	rs7162695	A	G	1765.77	.	AC=1;AF=0.500;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	0/1:236,101:0.30:337
chr15	33096638	.	CGGG	CG,C	188.73	.	AC=1,0;AF=0.500,0.00;AN=2;DP=19;set=Intersection	GT:AF:DP	0/1:0.82:11
chr15	33096645	.	G	A	197.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.922;ClippingRankSum=-0.000;DP=18;ExcessHet=3.0103;FS=3.424;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=17.98;ReadPosRankSum=-1.691;SOR=0.439;set=HC	GT:AD:AF:DP	0/1:2,9:0.82:11
chr15	33096666	rs12900156	A	G	42.74	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.37;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr15	33191023	rs173224	A	G	6101.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:1,216:1.00:217
chr15	33191187	rs78428401	A	G	1201.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:19,49:0.72:68
chr15	33202602	rs3812926	A	G	1030.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:36,51:0.59:87
chr15	33218589	rs36016183	C	CTCT	439.73	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:7,12:0.63:19
chr15	33256251	rs11637012	T	C	203.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:5,10:0.67:15
chr15	33261232	rs2930131	G	A	757.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.654;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=14.088;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.83;ReadPosRankSum=-0.438;SOR=0.121;set=HC	GT:AD:AF:DP	0/1:73,38:0.34:111
chr15	33300291	rs11630735	A	C	1384.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:30,58:0.66:88
chr15	33446879	rs1399077	G	T	6969.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr15	33446947	rs1399078	A	C	6326.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr15	33757840	rs2596163	G	A	1044.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr15	33765761	rs2245508	A	G	2763.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr15	33795710	rs2572204	A	G	4835.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:1,187:0.99:188
chr15	33822969	rs12900227	T	C	2459.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:84,109:0.56:193
chr15	33840414	rs1435100	A	G	3756.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr15	33842222	rs1865496	C	G	797.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr15	33842260	rs2304381	G	A	232.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.054;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=1.568;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.54;ReadPosRankSum=0.346;SOR=1.008;set=HC	GT:AD:AF:DP	0/1:28,14:0.33:42
chr15	33855345	rs2304379	G	A	610.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr15	33872177	rs674155	C	T	5327.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr15	33873657	rs668570	C	T	3686.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:105,169:0.62:274
chr15	33876449	rs10431811	G	A	3009.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr15	33876517	rs2643364	A	G	8367.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr15	33876543	rs624954	C	T	10693.77	.	AC=2;AF=1.00;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	1/1:0,400:1.00:400
chr15	33920662	rs35706688	T	C	9221.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	1/1:0,333:1.00:333
chr15	33923314	rs1495279	A	G	2793.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr15	33925364	rs2291732	G	A	5296.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr15	33939495	rs2291736	C	T	1502.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:46,68:0.60:114
chr15	33951910	rs2279662	T	C	2314.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:54,103:0.66:157
chr15	33952326	rs2279663	C	T	5368.77	.	AC=1;AF=0.500;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	0/1:100,235:0.70:335
chr15	33954652	rs4780144	C	T	10295.77	.	AC=2;AF=1.00;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	1/1:0,361:1.00:361
chr15	33955262	.	GTGAC	G	42	.	AC=1;AF=0.500;AN=2;BRF=0.33;FR=0.5000;HP=1;HapScore=2;MGOF=3;MMLQ=28;MQ=60.0;NF=0;NR=2;PP=42;QD=36.0;SC=GCTTGGCATAGTGACTGACCA;SbPval=1.0;Source=Platypus;TC=11;TCF=0;TCR=11;TR=2;WE=33955273;WS=33955252;set=Platypus	GT:AD:AF:DP	1/0:9,2:0.18:11
chr15	33961429	rs10630004	C	CA	116.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.313;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.36;MQRankSum=1.383;QD=3.89;ReadPosRankSum=2.021;SOR=0.402;set=HC	GT:AD:AF:DP	0/1:19,11:0.37:30
chr15	33962559	rs11072596	G	C	1083.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr15	33990041	rs3736531	A	G	2096.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:44,88:0.67:132
chr15	33990250	rs1111611	G	A	1472.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr15	33990294	rs1390161	G	A	223.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:22,12:0.35:34
chr15	33993320	rs2280419	G	A	2173.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:62,89:0.59:151
chr15	33993358	rs2280418	G	A	1265.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:34,49:0.59:83
chr15	34014913	rs2293028	C	T	2037.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:39,92:0.70:131
chr15	34016274	rs6495228	G	A	3019.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr15	34020914	rs28460434	T	G	298.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:14,12:0.46:26
chr15	34021276	rs7498093	T	G	867.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:30,37:0.55:67
chr15	34028651	rs12909708	T	C	283.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:24,15:0.38:39
chr15	34030887	rs12907197	A	G	1557.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr15	34030904	rs56011633	C	T	530.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:21,22:0.51:43
chr15	34032131	rs41279212	G	A	4808.77	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:119,215:0.64:334
chr15	34032225	rs61219904	G	C	3421.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:84,146:0.63:230
chr15	34038511	rs3812937	A	G	1379.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr15	34040496	rs1565936	G	A	448.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:48,25:0.34:73
chr15	34042554	.	C	G	768.77	.	AC=1;AF=0.500;AN=2;DP=49;set=Intersection	GT:AD:AF:DP	0/1:15,33:0.69:48
chr15	34060740	rs2278317	C	T	3417.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr15	34061523	rs2278316	C	G	271.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:34,14:0.29:48
chr15	34064043	rs1429754	T	C	2199.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr15	34065658	rs3086242	A	AT	818.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.209;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=1.658;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.80;ReadPosRankSum=-1.731;SOR=0.939;set=HC	GT:AD:AF:DP	0/1:53,52:0.50:105
chr15	34094048	rs35048413	G	T	790.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:25,29:0.54:54
chr15	34094201	rs2115747	C	T	7528.77	.	AC=1;AF=0.500;AN=2;DB;DP=547;set=Intersection	GT:AD:AF:DP	0/1:184,347:0.65:531
chr15	34103272	rs4780181	C	G	3820.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr15	34110759	rs2288612	A	G	702.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:61,39:0.39:100
chr15	34111876	rs150186949	AAAATAAATAAATAAAT	A,AAAATAAATAAATAAATAAAT	8945.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=345;set=Intersection	GT:AF:DP	1/2:0.63,0.34:238
chr15	34112825	rs1036005	C	T	1043.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:179,65:0.27:244
chr15	34112865	rs1036006	G	A	1822.77	.	AC=1;AF=0.500;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	0/1:268,108:0.29:376
chr15	34112906	rs1036007	C	A	2382.77	.	AC=1;AF=0.500;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	0/1:289,137:0.32:426
chr15	34113010	rs2288613	C	T	3573.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:94,157:0.63:251
chr15	34113054	rs3815965	G	A	1241.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:99,59:0.37:158
chr15	34113454	rs35254800	AT	A	268.73	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:116,33:0.22:149
chr15	34113536	rs2288614	A	G	910.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:136,58:0.30:194
chr15	34113592	rs2288615	T	G	3414.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:92,150:0.62:242
chr15	34115088	rs8032198	C	T	151.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:31,10:0.24:41
chr15	34117947	rs200179292	TC	T	809.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.036;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.12;ReadPosRankSum=0.301;SOR=1.473;set=HC	GT:AD:AF:DP	0/1:3,28:0.90:31
chr15	34117954	rs72715190	A	G	613.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.985;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.59;ReadPosRankSum=-0.763;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:12,25:0.68:37
chr15	34118994	rs4041449	C	CAG	8305.73	.	AC=2;AF=1.00;AN=2;DB;DP=193;MQ=60.17;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr15	34129357	rs7182398	C	T	2317.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr15	34132867	rs11639042	C	T	871.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:95,48:0.34:143
chr15	34133130	rs3764232	A	G	612.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:78,32:0.29:110
chr15	34135607	rs17817680	A	G	1774.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:156,97:0.38:253
chr15	34135826	rs2303868	G	A	3859.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr15	34136971	rs7181900	T	C	1257.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr15	34136996	rs2288603	T	C	446.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:32,23:0.42:55
chr15	34137292	rs12899715	C	G	604.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:15,27:0.64:42
chr15	34140735	rs2278314	A	G	778.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr15	34145697	rs80170683	C	G	297.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:30,15:0.33:45
chr15	34146783	rs2303308	G	A	3633.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:83,151:0.65:234
chr15	34146886	rs713201	T	C	5620.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr15	34146922	rs713203	C	T	8839.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:0,318:1.00:318
chr15	34147172	rs713202	C	T	1176.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:125,62:0.33:187
chr15	34151668	rs7180084	G	C	4079.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr15	34152777	rs2303310	T	A	6979.77	.	AC=1;AF=0.500;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	0/1:140,316:0.69:456
chr15	34156284	rs11072759	C	G	1414.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:72,70:0.49:142
chr15	34156312	rs11072760	T	C	1399.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:74,71:0.49:145
chr15	34157436	rs143114117	C	CAAAG	4547.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.925;ClippingRankSum=0.000;DB;DP=446;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=1.531;QD=10.68;ReadPosRankSum=1.546;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:298,128:0.30:426
chr15	34159986	rs2241647	T	C	1201.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:165,75:0.31:240
chr15	34168207	.	G	GA	48.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.346;ClippingRankSum=0.000;DP=487;ExcessHet=3.0103;FS=1.093;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=3.308;QD=0.11;ReadPosRankSum=0.464;SOR=0.600;set=HC	GT:AD:AF:DP	0/1:364,62:0.15:426
chr15	34380216	rs377063587	TA	T	241.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.381;ClippingRankSum=0.000;DB;DP=208;ExcessHet=3.0103;FS=0.679;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=2.570;QD=1.23;ReadPosRankSum=0.086;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:149,48:0.24:197
chr15	34437863	rs4780222	A	G	274.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr15	34441102	rs6495551	C	T	1183.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr15	34518009	rs111556114	C	A	967.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:62,49:0.44:111
chr15	34521253	rs7167503	A	T	255.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.99;ReadPosRankSum=0.457;SOR=0.343;set=HC	GT:AD:AF:DP	0/1:5,11:0.69:16
chr15	34528948	rs4577050	G	A	2081.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:81,97:0.54:178
chr15	34529488	rs35994446	G	GT	452.27	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.474;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.13;ReadPosRankSum=0.466;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:5,27:0.84:32
chr15	34532720	rs111617676	A	C	130.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:19,8:0.30:27
chr15	34536130	rs112899095	G	T	717.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:67,39:0.37:106
chr15	34537435	rs4371122	C	T	2380.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr15	34543055	rs10851964	G	A	1346.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:39,55:0.59:94
chr15	34543298	rs11382535	G	GA	1526.73	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:61,94:0.61:155
chr15	34547757	rs11421665	G	GA	336.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr15	34640054	rs150911418	AAAAAAT	A	2705.73	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.29;QD=43.64;SOR=3.647;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr15	34640218	rs374230	C	T	26086.77	.	AC=2;AF=1.00;AN=2;DB;DP=977;set=Intersection	GT:AD:AF:DP	1/1:1,963:1.00:964
chr15	34640378	rs430083	T	C	20767.77	.	AC=2;AF=1.00;AN=2;DB;DP=803;set=Intersection	GT:AD:AF:DP	1/1:0,786:1.00:786
chr15	34640959	rs371061	G	A	1313.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr15	34643103	rs347796	A	G	3478.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr15	34651587	rs4984236	C	T	139.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:22,10:0.31:32
chr15	34651983	rs34997758	T	C	106.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:30,9:0.23:39
chr15	34654339	rs10626628	T	TTCTCTC	3507.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.903;ClippingRankSum=0.000;DB;DP=447;ExcessHet=3.0103;FS=0.463;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.86;ReadPosRankSum=-0.111;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:268,128:0.32:396
chr15	34654718	rs2279686	C	T	148.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:35,9:0.20:44
chr15	34655092	rs2339434	T	C	324.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:39,19:0.33:58
chr15	34657589	rs4984237	A	G	62.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:14,5:0.26:19
chr15	34673722	rs76522922	C	T	1223.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.877;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=2.708;MLEAC=1;MLEAF=0.500;MQ=50.40;MQRankSum=-3.203;QD=7.16;ReadPosRankSum=-0.760;SOR=0.514;set=HC	GT:AD:AF:DP	0/1:101,70:0.41:171
chr15	34825132	rs199645647	C	G	138.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.823;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.09;MQRankSum=-0.431;QD=13.88;ReadPosRankSum=-0.108;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:4,6:0.60:10
chr15	35044757	rs34964522	C	T	3306.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:70,140:0.67:210
chr15	35045057	rs3743123	G	A	4462.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:93,182:0.66:275
chr15	35045312	rs651724	T	A	6004.77	.	AC=1;AF=0.500;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	0/1:155,267:0.63:422
chr15	35046816	rs2277558	T	A	372.73	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:78,29:0.27:107
chr15	35083508	rs113062201	TCACACACACACACACACA	T,TCACA	4159.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=197;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.05;QD=39.24;SOR=2.535;set=HC	GT:AD:AF:DP	1/2:0,70,36:0.66,0.34:106
chr15	35149008	rs8035240	C	T	8933.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr15	35149313	.	T	TA	242.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.634;ClippingRankSum=0.000;DP=156;ExcessHet=3.0103;FS=4.342;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.97;ReadPosRankSum=-1.589;SOR=0.334;set=HC	GT:AD:AF:DP	0/1:94,29:0.24:123
chr15	35155299	rs113629233	C	CT	45.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.820;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.14;ReadPosRankSum=1.389;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:31,9:0.23:40
chr15	35168056	rs2290321	C	T	662.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr15	35174666	rs34949352	T	TA	384.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.085;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=8.609;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.74;ReadPosRankSum=-0.860;SOR=2.948;set=HC	GT:AD:AF:DP	0/1:14,30:0.68:44
chr15	35185808	rs71929696	GCA	G	381.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.776;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=5.268;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=1.214;QD=8.30;ReadPosRankSum=0.397;SOR=1.696;set=HC	GT:AD:AF:DP	0/1:24,22:0.48:46
chr15	35185812	rs6495722	A	G	339.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.715;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=3.119;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=-0.955;QD=7.72;ReadPosRankSum=-0.575;SOR=0.245;set=HC	GT:AD:AF:DP	0/1:22,22:0.50:44
chr15	35185814	rs370012565	A	G	240.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.598;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=2.695;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=-0.647;QD=4.54;ReadPosRankSum=1.659;SOR=1.138;set=HC	GT:AD:AF:DP	0/1:36,17:0.32:53
chr15	35196492	rs12898639	C	T	266.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr15	35207397	rs2044920	C	G	1670.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:1,61:0.98:62
chr15	35230924	rs12594085	A	G	2061.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr15	35230934	rs10701045	A	ATAGT	3683.73	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr15	35252767	rs11636350	G	A	1976.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr15	35256624	rs9920529	C	G	2393.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:2,91:0.98:93
chr15	35261649	rs7164169	A	G	20496.77	.	AC=2;AF=1.00;AN=2;DB;DP=756;set=Intersection	GT:AD:AF:DP	1/1:0,748:1.00:748
chr15	35261952	rs7164070	C	T	1332.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr15	35664298	rs3759846	C	G	98.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:3,5:0.62:8
chr15	35664406	rs141638132	TA	T	283.73	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:12,20:0.62:32
chr15	35674184	rs80019930	T	G	553.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:25,25:0.50:50
chr15	35703269	rs16960864	G	C	188.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.512;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=3.161;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.63;ReadPosRankSum=0.695;SOR=0.264;set=HC	GT:AD:AF:DP	0/1:37,15:0.29:52
chr15	35834500	rs35525751	T	C	1176.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:20,50:0.71:70
chr15	35834547	rs1020307	T	C	1023.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:138,60:0.30:198
chr15	36218920	rs5811877	AT	A	568.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.268;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.64;ReadPosRankSum=1.979;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:28,17:0.38:45
chr15	36218922	rs6495804	T	A	1104.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.665;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.10;ReadPosRankSum=-0.635;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:22,28:0.56:50
chr15	36218923	rs71808099	AATT	A	565.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.228;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.30;ReadPosRankSum=2.231;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:29,17:0.37:46
chr15	36218926	rs62005169	T	A	1143.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.031;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.43;ReadPosRankSum=-0.790;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:22,29:0.57:51
chr15	36218930	rs1532477	T	A	1343.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.986;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=2.386;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.43;ReadPosRankSum=-0.956;SOR=1.079;set=HC	GT:AD:AF:DP	0/1:23,32:0.58:55
chr15	36218934	rs1532476	T	A	1327.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.577;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=2.383;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.50;ReadPosRankSum=-1.665;SOR=1.127;set=HC	GT:AD:AF:DP	0/1:23,36:0.61:59
chr15	36219182	rs374254467	AAG	A	67.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.017;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=3.816;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.51;ReadPosRankSum=-0.252;SOR=0.193;set=HC	GT:AD:AF:DP	0/1:17,10:0.37:27
chr15	36871957	rs3743337	C	T	2066.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:49,86:0.64:135
chr15	36937405	rs11073191	G	T	2141.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.77;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr15	36937606	.	A	C	41	.	AC=2;AF=1.00;AN=2;BRF=0.0;FR=1.0000;HP=5;HapScore=2;MGOF=7;MMLQ=23;MQ=60.0;NF=1;NR=3;PP=41;QD=18.9428031368;SC=TGTTTTAAGTATTTTATTCAA;SbPval=0.68;Source=Platypus;TC=4;TCF=1;TCR=3;TR=4;WE=36937614;WS=36937596;set=Platypus	GT:AD:AF:DP	1/1:0,4:1.00:4
chr15	36946153	rs10220771	G	A	5743.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr15	36946303	rs3784678	C	G	9433.77	.	AC=2;AF=1.00;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	1/1:0,364:1.00:364
chr15	36946441	rs10220785	C	T	1552.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr15	36949952	rs6495863	T	A	3087.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr15	36984409	rs3743338	T	C	8281.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chr15	36989469	rs2381887	G	A	3938.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:102,183:0.64:285
chr15	37026600	rs5811935	A	AT	214.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.149;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=4.201;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.57;ReadPosRankSum=0.022;SOR=1.010;set=HC	GT:AD:AF:DP	0/1:27,20:0.43:47
chr15	37026612	rs2078369	A	T	491.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.420;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=2.509;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.46;ReadPosRankSum=-0.334;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:20,27:0.57:47
chr15	37110637	rs1194621	T	C	1947.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr15	37173379	rs16964235	T	C	760.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:73,40:0.35:113
chr15	37173945	rs4451907	A	G	327.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:6,14:0.70:20
chr15	37187197	rs61146116	A	AT	672.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr15	37242440	.	G	GA	105.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.244;ClippingRankSum=0.000;DP=139;ExcessHet=3.0103;FS=0.966;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=2.402;QD=0.79;ReadPosRankSum=0.769;SOR=0.917;set=HC	GT:AD:AF:DP	0/1:105,28:0.21:133
chr15	37328923	.	AC	A	273.73	.	AC=1;AF=0.500;AN=2;DP=40;set=Intersection	GT:AD:AF:DP	0/1:28,12:0.30:40
chr15	37387971	rs3751544	C	T	883.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:20,34:0.63:54
chr15	38230565	rs59125264	TG	T	2714.73	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr15	38233223	rs1021796	T	C	827.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:13,31:0.70:44
chr15	38233869	rs2937991	T	C	5808.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr15	38243475	rs372111310	G	C	1286.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:20,55:0.73:75
chr15	38258772	rs2959336	A	C	5516.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr15	38590722	rs8040553	T	G	1774.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr15	38590771	rs8036280	A	G	2728.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr15	38590854	rs8034630	G	A	3121.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr15	38614525	rs7182445	G	A	3545.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr15	38617113	rs1879938	C	T	820.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.04;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr15	38617113	.	CTC	TTG	501	.	AC=2;AF=1.00;AN=2;BRF=0.4;FR=1.0000;HP=1;HapScore=1;MGOF=0;MMLQ=24;MQ=60.0;NF=3;NR=10;PP=501;QD=42.6513749894;SC=TTCTAAGACACTCTATTTGTC;SbPval=0.6;Source=Platypus;TC=13;TCF=3;TCR=10;TR=13;WE=38617123;WS=38617103;set=Platypus	GT:AD:AF:DP	1/1:0,13:1.00:13
chr15	38617115	rs1879937	C	G	820.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.60;SOR=1.493;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr15	38631840	rs7163339	T	C	2229.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr15	38631920	rs7179118	G	A	3664.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.103;ClippingRankSum=0.000;DB;DP=247;ExcessHet=3.0103;FS=5.615;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.21;ReadPosRankSum=0.449;SOR=1.048;set=HC	GT:AD:AF:DP	0/1:84,157:0.65:241
chr15	38631930	rs7180446	C	A	9467.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.33;SOR=1.058;set=HC	GT:AD:AF:DP	1/1:0,247:1.00:247
chr15	38632148	rs7181472	A	G	2419.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr15	38641773	rs61670754	G	GTT	3438.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.09;SOR=2.690;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr15	38641774	.	A	T	1107	.	AC=2;AF=1.00;AN=2;BRF=0.53;FR=1.0000;HP=1;HapScore=1;MGOF=2;MMLQ=28;MQ=60.0;NF=4;NR=36;PP=1107;QD=28.5442803137;SC=TAATTAATAGATAGGTAAAGT;SbPval=0.51;Source=Platypus;TC=43;TCF=4;TCR=39;TR=40;WE=38641785;WS=38641764;set=Platypus	GT:AD:AF:DP	1/1:3,40:0.93:43
chr15	38641774	rs34352434	A	AAAT	3483.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.84;SOR=2.774;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr15	38641776	.	A	AAATTAGT	2720	.	AC=2;AF=1.00;AN=2;BRF=0.53;FR=1.0000;HP=2;HapScore=1;MGOF=2;MMLQ=28;MQ=60.0;NF=1;NR=35;PP=2720;QD=20;SC=ATTAATAGATAGGTAAAGTTT;SbPval=0.63;Source=Platypus;TC=36;TCF=1;TCR=35;TR=36;WE=38641785;WS=38641764;set=Platypus	GT:AD:AF:DP	1/1:0,36:1.00:36
chr15	38641777	.	G	A	1108	.	AC=2;AF=1.00;AN=2;BRF=0.53;FR=1.0000;HP=1;HapScore=1;MGOF=2;MMLQ=28;MQ=60.0;NF=3;NR=35;PP=1108;QD=30.072926646;SC=TTAATAGATAGGTAAAGTTTT;SbPval=0.52;Source=Platypus;TC=41;TCF=3;TCR=38;TR=38;WE=38641785;WS=38641764;set=Platypus	GT:AD:AF:DP	1/1:3,38:0.93:41
chr15	38641777	rs59928364	G	GTA	3382.73	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.34;SOR=2.995;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr15	38643574	rs3751526	T	C	11216.77	.	AC=2;AF=1.00;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	1/1:0,406:1.00:406
chr15	38794566	rs12324402	A	G	2516.77	.	AC=1;AF=0.500;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	0/1:291,147:0.34:438
chr15	38804020	rs11413668	T	TA	212.73	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:19,9:0.32:28
chr15	38805185	rs55888286	A	C	881.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:14,36:0.72:50
chr15	38990769	rs7172816	T	C	134.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.012;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=2.085;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.93;ReadPosRankSum=-0.956;SOR=0.240;set=HC	GT:AD:AF:DP	0/1:35,11:0.24:46
chr15	38990803	rs12595568	T	G	585.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:6,22:0.79:28
chr15	39544512	rs11853050	C	T	4503.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:130,202:0.61:332
chr15	40005793	.	G	GA	172.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.504;ClippingRankSum=0.000;DP=193;ExcessHet=3.0103;FS=4.985;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=2.783;QD=1.01;ReadPosRankSum=-0.242;SOR=1.217;set=HC	GT:AD:AF:DP	0/1:138,33:0.19:171
chr15	40030440	rs1906163	G	A	679.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.706;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.548;QD=5.35;ReadPosRankSum=2.259;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:89,38:0.30:127
chr15	40030457	rs34646792	GA	G	281.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.342;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=2.349;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.440;QD=3.31;ReadPosRankSum=1.308;SOR=1.087;set=HC	GT:AD:AF:DP	0/1:58,27:0.32:85
chr15	40031715	rs8033687	C	T	779.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr15	40056219	rs34937456	G	A	1129.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.033;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.04;ReadPosRankSum=-0.724;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:89,36:0.29:125
chr15	40056223	rs62004778	T	C	1044.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.303;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.78;ReadPosRankSum=0.498;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:87,32:0.27:119
chr15	40062825	rs1565560	C	A	861.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.151;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=3.023;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.84;ReadPosRankSum=-1.837;SOR=0.420;set=HC	GT:AD:AF:DP	0/1:84,42:0.33:126
chr15	40062838	rs7179838	G	A	648.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:68,34:0.33:102
chr15	40062855	rs1565561	C	T	383.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:52,23:0.31:75
chr15	40062884	rs7180846	T	C	195.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:26,11:0.30:37
chr15	40094564	rs17717859	C	T	193.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:9,10:0.53:19
chr15	40226495	rs566792	T	C	3157.77	.	AC=1;AF=0.500;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	0/1:259,164:0.39:423
chr15	40235552	.	CTT	C	142.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.934;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=3.751;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.49;ReadPosRankSum=0.322;SOR=0.861;set=HC	GT:AD:AF:DP	0/1:16,10:0.38:26
chr15	40248122	rs8030025	G	A	337.18	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:1,13:0.93:14
chr15	40254155	rs510949	A	G	2266.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr15	40259504	rs522933	G	A	121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.834;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=3.437;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.30;ReadPosRankSum=-1.385;SOR=0.250;set=HC	GT:AD:AF:DP	0/1:42,11:0.21:53
chr15	40259519	rs33911018	C	CT	608.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.202;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.61;ReadPosRankSum=0.396;SOR=0.816;set=HC	GT:AD:AF:DP	0/1:38,42:0.53:80
chr15	40265799	rs2307105	A	G	6547.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr15	40269052	rs34298786	G	A	5025.77	.	AC=1;AF=0.500;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	0/1:133,231:0.63:364
chr15	40269102	rs149792847	A	AT	2024.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.949;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=2.085;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.336;QD=11.50;ReadPosRankSum=-1.325;SOR=0.898;set=HC	GT:AD:AF:DP	0/1:66,110:0.62:176
chr15	40269126	rs112695691	T	TTTCC	1220.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.133;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=0.868;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.63;ReadPosRankSum=1.001;SOR=0.518;set=HC	GT:AD:AF:DP	0/1:67,38:0.36:105
chr15	40270214	rs7174071	A	G	1334.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr15	40282625	rs4144472	T	C	3958.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr15	40284523	rs7178419	C	T	5118.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr15	40284802	rs11070241	C	T	944.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr15	40285120	rs11633992	A	G	2812.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr15	40291140	rs2412457	C	T	542.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr15	40300092	rs2279581	T	C	1496.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr15	40300214	rs2279580	G	C	1676.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.057;ClippingRankSum=0.000;DB;DP=418;ExcessHet=3.0103;FS=3.946;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.11;ReadPosRankSum=-0.469;SOR=1.028;set=HC	GT:AD:AF:DP	0/1:306,102:0.25:408
chr15	40300443	rs2279579	T	G	1570.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:44,61:0.58:105
chr15	40313083	rs12916520	G	T	1952.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr15	40313141	rs3207297	C	T	2035.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:45,85:0.65:130
chr15	40314967	rs8030856	C	G	566.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:11,21:0.66:32
chr15	40322552	rs2250402	G	T	4010.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr15	40324837	rs2291621	C	T	6419.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr15	40327219	.	CT	C	1123.73	.	AC=1;AF=0.500;AN=2;DP=84;set=Intersection	GT:AD:AF:DP	0/1:30,49:0.62:79
chr15	40328575	rs7535	G	C	11985.77	.	AC=2;AF=1.00;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	1/1:0,428:1.00:428
chr15	40328665	rs8208	G	A	6603.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr15	40328973	rs2291620	A	G	961.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:18,34:0.65:52
chr15	40329033	rs2291619	A	G	3929.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr15	40329480	rs3215044	G	GAA	552.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.306;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=1.803;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=0.540;QD=16.26;ReadPosRankSum=-1.063;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:6,28:0.82:34
chr15	40330564	rs7321	C	T	6494.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr15	40330629	rs8041057	C	T	7735.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr15	40330693	rs937215	C	T	4890.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr15	40331202	rs62621371	C	T	7110.77	.	AC=1;AF=0.500;AN=2;DB;DP=1276;set=Intersection	GT:AD:AF:DP	0/1:861,409:0.32:1270
chr15	40397936	rs539846	G	T	1265.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:27,56:0.67:83
chr15	40453307	rs2277559	A	G	785.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:52,39:0.43:91
chr15	40457129	rs3214012	A	C	73.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.012;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.34;ReadPosRankSum=-2.195;SOR=0.382;set=HC	GT:AD:AF:DP	0/1:12,5:0.29:17
chr15	40457431	rs17668261	A	C	871.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:95,51:0.35:146
chr15	40462780	rs1801389	G	A	777.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:152,52:0.25:204
chr15	40477831	rs1801376	G	A	718.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:117,47:0.29:164
chr15	40494952	rs2412482	A	T	963.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:85,47:0.36:132
chr15	40556685	rs7162809	A	G	13402.77	.	AC=2;AF=1.00;AN=2;DB;DP=496;set=Intersection	GT:AD:AF:DP	1/1:0,492:1.00:492
chr15	40556713	rs12902461	T	C	12603.77	.	AC=2;AF=1.00;AN=2;DB;DP=470;set=Intersection	GT:AD:AF:DP	1/1:0,466:1.00:466
chr15	40558744	rs748556	G	A	3717.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:65,151:0.70:216
chr15	40565055	rs2253603	G	A	11930.77	.	AC=2;AF=1.00;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	1/1:0,445:1.00:445
chr15	40573716	rs4924446	A	G	2829.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr15	40582128	.	AAGAGAGAGAGAGAGAG	A,AAG	3123.73	.	AC=1,1;AF=0.500,0.500;AN=2;ClippingRankSum=0.000;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.96;MQRankSum=0.098;QD=37.64;SOR=0.504;set=HC	GT:AD:AF:DP	1/2:3,37,43:0.45,0.52:83
chr15	40582165	rs62021886	A	T	125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.796;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=0.848;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.013;QD=0.83;ReadPosRankSum=4.900;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:128,23:0.15:151
chr15	40582167	rs62021887	A	T	1609.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.493;ClippingRankSum=0.000;DB;DP=199;ExcessHet=3.0103;FS=0.730;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=1.421;QD=14.63;ReadPosRankSum=5.010;SOR=0.833;set=HC	GT:AD:AF:DP	0/1:54,56:0.51:110
chr15	40582169	rs8036867	A	T	6323.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.611;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.97;MQRankSum=0.025;QD=35.33;ReadPosRankSum=1.374;SOR=0.906;set=HC	GT:AD:AF:DP	1/1:10,169:0.94:179
chr15	40582713	rs34370826	TAG	T	2694.73	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr15	40583093	rs2412506	A	G	2248.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr15	40583458	rs936209	A	G	6931.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr15	40583876	rs9972418	T	G	11955.77	.	AC=2;AF=1.00;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	1/1:0,431:1.00:431
chr15	40589002	rs2229691	A	G	2880.77	.	AC=1;AF=0.500;AN=2;DB;DP=596;set=Intersection	GT:AD:AF:DP	0/1:414,166:0.29:580
chr15	40589830	rs2305649	G	A	2059.77	.	AC=1;AF=0.500;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	0/1:263,117:0.31:380
chr15	40590134	rs2229690	G	A	1686.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:160,91:0.36:251
chr15	40593939	rs2305647	C	T	2323.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr15	40595414	rs1869902	G	C	3374.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:2,125:0.98:127
chr15	40595627	rs1869901	G	A	3414.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr15	40627845	rs55641696	G	A	5291.77	.	AC=1;AF=0.500;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	0/1:117,225:0.66:342
chr15	40629846	.	G	C	453.77	.	AC=1;AF=0.500;AN=2;DP=27;set=Intersection	GT:AD:AF:DP	0/1:7,19:0.73:26
chr15	40630913	rs72733403	C	T	8889.77	.	AC=1;AF=0.500;AN=2;DB;DP=558;set=Intersection	GT:AD:AF:DP	0/1:171,375:0.69:546
chr15	40632302	rs12440659	G	C	6577.77	.	AC=1;AF=0.500;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	0/1:140,290:0.67:430
chr15	40645341	.	TGTGTGTGC	T	975	.	AC=1;AF=0.500;AN=2;BRF=0.45;FR=0.5000;HP=2;HapScore=3;MGOF=18;MMLQ=24;MQ=59.73;NF=7;NR=6;PP=975;QD=75.2307692308;SC=TGTGTGTGTGTGTGTGTGCGC;SbPval=0.47;Source=Platypus;TC=34;TCF=20;TCR=14;TR=13;WE=40645356;WS=40645331;set=Platypus	GT:AD:AF:DP	1/0:21,13:0.38:34
chr15	40645347	rs11853293	T	C	359.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.315;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=3.431;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.37;ReadPosRankSum=1.215;SOR=0.245;set=HC	GT:AD:AF:DP	0/1:19,24:0.56:43
chr15	40646520	rs71132169	CT	C	2320.73	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:85,134:0.61:219
chr15	40648610	rs62017981	C	T	3515.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:56,147:0.72:203
chr15	40650449	.	G	GCCGCCA	1521.73	.	AC=1;AF=0.500;AN=2;DP=51;set=Intersection	GT:AD:AF:DP	0/1:11,39:0.78:50
chr15	40650784	rs111246437	GC	G	1882.73	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:34,71:0.68:105
chr15	40655845	rs1898883	C	G	8184.77	.	AC=1;AF=0.500;AN=2;DB;DP=541;set=Intersection	GT:AD:AF:DP	0/1:169,360:0.68:529
chr15	40660566	rs72733420	G	A	6407.77	.	AC=1;AF=0.500;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	0/1:137,268:0.66:405
chr15	40681676	rs6492944	T	A	3189.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:65,141:0.68:206
chr15	40683780	rs2289332	G	A	2353.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:65,110:0.63:175
chr15	40684232	rs72733427	G	A	2407.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:69,109:0.61:178
chr15	40684289	rs72733428	T	C	1208.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:38,53:0.58:91
chr15	40685206	rs11321442	AT	A	1155.73	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:40,75:0.65:115
chr15	40685326	rs28379196	A	G	5541.77	.	AC=1;AF=0.500;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	0/1:126,243:0.66:369
chr15	40685406	rs8036457	A	T	6233.77	.	AC=1;AF=0.500;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	0/1:126,281:0.69:407
chr15	40685508	rs8037941	T	C	2217.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:50,101:0.67:151
chr15	40685850	rs11541643	A	G	2713.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:42,116:0.73:158
chr15	40699940	rs2289331	T	C	1612.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:30,66:0.69:96
chr15	40700006	rs3214685	G	GTT	1091.73	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:17,32:0.65:49
chr15	40703339	rs8034416	C	T	550.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:12,25:0.68:37
chr15	40703609	rs4924466	A	G	3637.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr15	40705105	rs2289330	A	G	1201.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:22,52:0.70:74
chr15	40705225	rs2229312	C	T	1960.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:50,92:0.65:142
chr15	40708422	rs11070270	A	G	2816.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:94,123:0.57:217
chr15	40712737	rs11790	T	C	1638.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:28,74:0.73:102
chr15	40727879	rs72733450	C	A	706.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:20,29:0.59:49
chr15	40751555	rs3803357	C	A	6958.77	.	AC=1;AF=0.500;AN=2;DB;DP=509;set=Intersection	GT:AD:AF:DP	0/1:178,314:0.64:492
chr15	40820805	rs7164166	A	G	316.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr15	40824710	rs8029208	T	C	534.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr15	40827030	rs12916323	C	G	3348.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:66,143:0.68:209
chr15	40855210	rs10152546	T	A	1003.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:113,56:0.33:169
chr15	40856989	rs3803354	C	T	15148.77	.	AC=2;AF=1.00;AN=2;DB;DP=576;set=Intersection	GT:AD:AF:DP	1/1:0,571:1.00:571
chr15	40862064	rs1058734	C	T	2036.77	.	AC=1;AF=0.500;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	0/1:262,121:0.32:383
chr15	40862191	rs141235042	G	GGTTTTGTTTTGTTTTGTTTT	1461.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.997;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=9.458;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.58;ReadPosRankSum=-1.242;SOR=2.147;set=HC	GT:AD:AF:DP	0/1:25,37:0.60:62
chr15	40898643	rs7177192	G	C	1250.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr15	40900943	rs35446763	CA	C	335.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.203;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.49;ReadPosRankSum=1.727;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:5,27:0.84:32
chr15	40903684	rs12911738	A	G	351.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr15	40903814	rs12912058	C	A	87.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.76;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr15	40907698	rs11427985	T	TG	669.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.25;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr15	40913840	rs2412541	G	T	3705.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr15	40914177	rs11858113	T	C	2935.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:70,129:0.65:199
chr15	40914772	rs11855334	C	T	4311.77	.	AC=1;AF=0.500;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:119,193:0.62:312
chr15	40915045	rs8041534	T	G	1712.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:20,75:0.79:95
chr15	40915190	rs8040502	A	G	8074.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chr15	40915894	rs11070285	T	C	7615.77	.	AC=1;AF=0.500;AN=2;DB;DP=571;set=Intersection	GT:AD:AF:DP	0/1:207,354:0.63:561
chr15	40916237	rs17747633	A	G	3791.77	.	AC=1;AF=0.500;AN=2;DB;DP=480;set=Intersection	GT:AD:AF:DP	0/1:287,190:0.40:477
chr15	40937727	rs6492959	C	T	2793.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr15	40939448	rs8041095	G	A	227.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;MQ=58.33;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr15	40942715	rs34904135	GT	G	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.300;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.49;ReadPosRankSum=2.011;SOR=0.791;set=HC	GT:AD:AF:DP	0/1:17,9:0.35:26
chr15	40947023	rs10444817	C	T	737.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:12,34:0.74:46
chr15	40949526	rs2412544	C	T	1265.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:28,57:0.67:85
chr15	40951461	.	CA	C	48.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.172;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=2.524;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=1.945;QD=1.06;ReadPosRankSum=0.450;SOR=1.379;set=HC	GT:AD:AF:DP	0/1:32,14:0.30:46
chr15	40998305	rs45592734	T	A	399.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:23,19:0.45:42
chr15	41030579	rs34355108	C	CA	694.73	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:23,39:0.63:62
chr15	41030865	rs2304582	C	G	892.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:18,35:0.66:53
chr15	41036448	rs4923884	G	A	2519.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:104,112:0.52:216
chr15	41047024	rs7169010	G	A	937.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:3,36:0.92:39
chr15	41063244	rs1866170	C	T	1527.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:33,68:0.67:101
chr15	41065890	rs2289219	C	T	2930.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:70,127:0.64:197
chr15	41067363	.	G	A	572.77	.	AC=1;AF=0.500;AN=2;DP=75;set=Intersection	GT:AD:AF:DP	0/1:42,30:0.42:72
chr15	41071867	.	CA	C	72.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.575;ClippingRankSum=0.000;DP=122;ExcessHet=3.0103;FS=1.030;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.972;QD=0.70;ReadPosRankSum=-0.149;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:78,26:0.25:104
chr15	41099899	rs142730574	T	TGGGGC	2148.73	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:28,53:0.65:81
chr15	41101124	rs3743033	C	G	914.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:21,34:0.62:55
chr15	41101145	rs3743034	C	T	1245.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:31,47:0.60:78
chr15	41104817	.	A	G	976	.	AC=1;AF=0.500;AN=2;BRF=0.36;FR=0.5000;HP=3;HapScore=2;MGOF=53;MMLQ=25;MQ=62.41;NF=39;NR=13;PP=976;QD=19.4379079336;SC=AGAAAAGAAAAGGTTGAGAAA;SbPval=0.63;Source=Platypus;TC=93;TCF=68;TCR=25;TR=52;WE=41104825;WS=41104807;set=Platypus	GT:AD:AF:DP	0/1:41,52:0.56:93
chr15	41104874	rs17657877	G	C	2615.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:77,117:0.60:194
chr15	41105658	rs3736286	G	A	1932.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:58,90:0.61:148
chr15	41105926	rs690347	T	G	3642.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr15	41106485	rs7915	A	C	308.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:60,22:0.27:82
chr15	41109371	rs12148058	G	A	127.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr15	41146581	rs3736287	T	C	4099.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr15	41148199	rs659232	C	T	12817.77	.	AC=2;AF=1.00;AN=2;DB;DP=496;set=Intersection	GT:AD:AF:DP	1/1:0,487:1.00:487
chr15	41149161	rs690458	G	C	11370.77	.	AC=2;AF=1.00;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	1/1:0,429:1.00:429
chr15	41165739	rs1814692	A	C	10335.77	.	AC=2;AF=1.00;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	1/1:0,368:1.00:368
chr15	41193274	rs9806730	T	C	3849.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr15	41193316	rs9806683	C	T	2354.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr15	41224124	rs3212278	G	A	769.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:15,29:0.66:44
chr15	41224280	rs3212279	G	T	1077.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:110,59:0.35:169
chr15	41245676	rs11557249	G	A	922.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:130,56:0.30:186
chr15	41246237	rs3033592	A	ATC	1151.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr15	41275305	.	G	GA	111.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.821;ClippingRankSum=0.000;DP=123;ExcessHet=3.0103;FS=3.909;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=3.123;QD=1.08;ReadPosRankSum=2.302;SOR=1.377;set=HC	GT:AD:AF:DP	0/1:82,21:0.20:103
chr15	41276158	rs11855248	G	A	935.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:37,47:0.56:84
chr15	41297711	.	T	TA	255.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.064;ClippingRankSum=0.000;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.607;QD=2.87;ReadPosRankSum=1.149;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:60,29:0.33:89
chr15	41308142	.	C	CA	74.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.224;ClippingRankSum=-0.000;DP=26;ExcessHet=3.0103;FS=2.077;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.25;ReadPosRankSum=0.783;SOR=0.184;set=HC	GT:AD:AF:DP	0/1:14,9:0.39:23
chr15	41313064	rs3214068	C	G	701.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:57,36:0.39:93
chr15	41315591	rs72527311	A	AAT	6405.73	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr15	41339481	rs11070320	C	T	1095.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:1,41:0.98:42
chr15	41346092	rs2899010	T	C	3466.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr15	41347658	rs2306083	G	A	473.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:20,20:0.50:40
chr15	41350766	rs72522214	TGC	T	250.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.516;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.63;ReadPosRankSum=0.995;SOR=0.554;set=HC	GT:AD:AF:DP	0/1:50,19:0.28:69
chr15	41350772	rs58264392	T	C	402.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.536;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=1.013;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.75;ReadPosRankSum=0.083;SOR=0.542;set=HC	GT:AD:AF:DP	0/1:49,21:0.30:70
chr15	41371772	.	C	CA	91.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.73;ReadPosRankSum=-0.901;SOR=0.418;set=HC	GT:AD:AF:DP	0/1:38,15:0.28:53
chr15	41373029	rs1983400	T	C	738.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr15	41476101	rs521088	T	C	1925.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr15	41476465	rs690733	G	A	12845.77	.	AC=2;AF=1.00;AN=2;DB;DP=484;set=Intersection	GT:AD:AF:DP	1/1:0,477:1.00:477
chr15	41476856	rs111604343	C	CT	61.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.178;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=2.905;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.862;QD=0.83;ReadPosRankSum=-1.737;SOR=0.317;set=HC	GT:AD:AF:DP	0/1:59,15:0.20:74
chr15	41483631	rs11371504	T	TA	7468.73	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr15	41483636	rs2412609	C	T	7691.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr15	41487861	rs33987701	C	CA	393.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.607;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=2.188;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.75;ReadPosRankSum=-0.126;SOR=1.584;set=HC	GT:AD:AF:DP	0/1:14,31:0.69:45
chr15	41487934	rs28382348	G	C	5719.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr15	41508829	.	C	CA	57.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.488;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.31;ReadPosRankSum=-0.015;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:35,9:0.20:44
chr15	41509288	rs7173086	T	A	2160.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:99,92:0.48:191
chr15	41512195	.	T	TA	63.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.634;ClippingRankSum=0.000;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.97;ReadPosRankSum=3.197;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:52,14:0.21:66
chr15	41555249	rs7175912	T	C	198.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr15	41570909	rs11630656	T	G	2870.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:132,136:0.51:268
chr15	41571408	.	C	CA	131.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.079;ClippingRankSum=0.000;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=0.000;QD=2.27;ReadPosRankSum=-0.011;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:40,18:0.31:58
chr15	41605632	rs8032838	G	A	329.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:11,14:0.56:25
chr15	41605653	rs8032846	G	C	306.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:4,12:0.75:16
chr15	41624397	rs28492932	G	C	6507.77	.	AC=1;AF=0.500;AN=2;DB;DP=635;set=Intersection	GT:AD:AF:DP	0/1:315,315:0.50:630
chr15	41634587	rs7178634	AC	GA	3931.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;JOINED;set=Intersection	GT:AD:AF:DP	0/1:68,99:0.59:167
chr15	41663896	rs13379756	A	C	2077.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.485;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=0.643;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=-1.053;QD=12.52;ReadPosRankSum=0.203;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:74,92:0.55:166
chr15	41663998	rs116853338	C	T	388.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:19,18:0.49:37
chr15	41672384	rs7168431	A	G	1309.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:69,71:0.51:140
chr15	41672441	rs11376196	A	AT	177.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.874;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.68;ReadPosRankSum=-1.537;SOR=0.553;set=HC	GT:AD:AF:DP	0/1:22,16:0.42:38
chr15	41679685	rs12900702	G	C	2343.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:99,109:0.52:208
chr15	41689166	rs3204853	C	A	2440.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:153,116:0.43:269
chr15	41689232	rs1899	C	T	1558.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:91,77:0.46:168
chr15	41750096	rs11313160	TC	T	1010.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr15	41766966	rs167581	G	A	2152.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr15	41768498	rs143834672	GCT	G	176.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.640;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=5.147;MLEAC=1;MLEAF=0.500;MQ=60.42;MQRankSum=2.715;QD=3.61;ReadPosRankSum=-0.110;SOR=0.124;set=HC	GT:AD:AF:DP	0/1:39,10:0.20:49
chr15	41772693	rs316607	G	A	854.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:35,34:0.49:69
chr15	41795900	rs316617	T	C	1610.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:111,83:0.43:194
chr15	41796941	rs201729483	T	TGGGGAAGGGGA	2186.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.423;ClippingRankSum=0.000;DB;DP=401;ExcessHet=3.0103;FS=31.898;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=3.557;QD=8.04;ReadPosRankSum=-2.063;SOR=1.345;set=HC	GT:AD:AF:DP	0/1:206,66:0.24:272
chr15	41803754	rs55739813	G	A	1906.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:130,94:0.42:224
chr15	41803807	rs142856524	G	A	2073.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:100,99:0.50:199
chr15	41805237	rs2305030	C	T	1733.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:99,82:0.45:181
chr15	41810439	rs932959	G	C	341.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:17,17:0.50:34
chr15	41813279	rs3743031	C	T	5240.77	.	AC=1;AF=0.500;AN=2;DB;DP=516;set=Intersection	GT:AD:AF:DP	0/1:251,246:0.49:497
chr15	41815516	rs8027526	G	C	12844.77	.	AC=2;AF=1.00;AN=2;DB;DP=478;set=Intersection	GT:AD:AF:DP	1/1:0,470:1.00:470
chr15	41815649	rs2297377	A	G	2363.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:94,106:0.53:200
chr15	41816190	rs2297378	T	G	4184.77	.	AC=1;AF=0.500;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	0/1:212,192:0.48:404
chr15	41817367	rs2274858	A	G	3070.77	.	AC=1;AF=0.500;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	0/1:208,160:0.43:368
chr15	41819283	rs2297379	G	A	4644.77	.	AC=1;AF=0.500;AN=2;DB;DP=451;set=Intersection	GT:AD:AF:DP	0/1:231,218:0.49:449
chr15	41819322	rs2297380	C	T	4459.77	.	AC=1;AF=0.500;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	0/1:238,208:0.47:446
chr15	41819716	rs1200345	C	T	3442.77	.	AC=1;AF=0.500;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	0/1:194,165:0.46:359
chr15	41819998	rs11070334	G	A	479.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:31,20:0.39:51
chr15	41821752	rs1200349	T	C	2310.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:123,115:0.48:238
chr15	41822163	rs61753586	C	T	3419.77	.	AC=1;AF=0.500;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	0/1:208,174:0.46:382
chr15	41822323	rs11632399	C	T	632.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:38,29:0.43:67
chr15	41827243	rs7181115	A	G	2134.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr15	41827655	rs2297381	C	T	386.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:8,14:0.64:22
chr15	41827757	rs2297382	T	A	1411.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:77,71:0.48:148
chr15	41829230	rs721772	A	G	4004.77	.	AC=1;AF=0.500;AN=2;DB;DP=434;MQ=60.02;set=Intersection	GT:AD:AF:DP	0/1:231,192:0.45:423
chr15	41851709	rs113721358	A	G	329.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.37;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr15	41856543	rs11070339	A	G	864.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:35,38:0.52:73
chr15	41860411	rs7171675	G	A	275.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:17,12:0.41:29
chr15	41865488	rs2246444	C	T	10386.77	.	AC=2;AF=1.00;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	1/1:0,374:1.00:374
chr15	42028354	rs2577960	C	A	868.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr15	42052781	.	T	C	584.77	.	AC=1;AF=0.500;AN=2;DP=74;set=Intersection	GT:AD:AF:DP	0/1:39,32:0.45:71
chr15	42109223	rs1197689	T	C	4635.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr15	42111745	rs56070211	CG	C	5552.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.757;ClippingRankSum=0.000;DB;DP=265;ExcessHet=3.0103;FS=2.934;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.57;ReadPosRankSum=2.645;SOR=0.391;set=HC	GT:AD:AF:DP	1/1:12,214:0.95:226
chr15	42114414	rs2303517	C	T	7566.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr15	42115019	rs34055060	C	T	2556.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr15	42115426	rs1197688	A	G	6396.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr15	42120437	rs13380315	C	G	3235.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr15	42127443	rs2241523	G	C	3394.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr15	42127918	rs11070350	A	G	5086.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr15	42128855	rs7166139	T	C	5236.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr15	42129168	rs7165230	A	T	9037.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.24;SOR=0.722;set=HC	GT:AD:AF:DP	1/1:0,209:1.00:209
chr15	42129176	rs890504	T	C	9078.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.44;SOR=0.890;set=HC	GT:AD:AF:DP	1/1:0,209:1.00:209
chr15	42129373	rs11547012	C	G	4204.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr15	42131965	rs57498313	A	G	3781.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr15	42132200	rs2077543	C	G	2849.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr15	42134652	rs1672464	G	A	1103.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:16,44:0.73:60
chr15	42140998	rs4078788	C	G	693.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr15	42143442	rs58030013	G	T	2619.77	.	AC=1;AF=0.500;AN=2;DB;DP=549;set=Intersection	GT:AD:AF:DP	0/1:382,160:0.30:542
chr15	42143533	rs1197665	T	G	7883.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr15	42144332	rs1197662	T	C	1481.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr15	42144791	.	TC	T	4133.73	.	AC=1;AF=0.500;AN=2;DP=265;MQ=60.16;set=Intersection	GT:AD:AF:DP	0/1:106,153:0.59:259
chr15	42144967	.	TG	T	399.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.263;ClippingRankSum=0.000;DP=387;ExcessHet=3.0103;FS=3.553;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=4.499;QD=1.21;ReadPosRankSum=-1.614;SOR=0.939;set=HC	GT:AD:AF:DP	0/1:277,52:0.16:329
chr15	42145049	rs55978013	C	T	5277.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr15	42147639	rs2305655	A	C	2279.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:203,121:0.37:324
chr15	42147968	rs375626001	G	A	468.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:55,26:0.32:81
chr15	42153519	rs2278965	G	C	212.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:25,10:0.29:35
chr15	42211486	rs1704396	A	G	4340.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:100,183:0.65:283
chr15	42235173	rs11631075	G	A	334.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.663;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.86;ReadPosRankSum=-0.956;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:92,25:0.21:117
chr15	42235316	rs11549015	C	T	4922.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:81,219:0.73:300
chr15	42281719	rs1668579	G	A	2891.77	.	AC=1;AF=0.500;AN=2;DB;DP=465;set=Intersection	GT:AD:AF:DP	0/1:299,158:0.35:457
chr15	42281790	rs1530837	A	G	1459.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:137,77:0.36:214
chr15	42287578	rs1668586	G	A	3895.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr15	42289522	rs1704357	C	T	1863.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr15	42292532	rs1668557	T	C	883.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr15	42297092	rs2598464	G	A	7428.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr15	42298133	rs1704366	A	G	1310.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr15	42302433	rs9920802	A	G	2247.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.669;ClippingRankSum=0.000;DB;DP=293;ExcessHet=3.0103;FS=2.972;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.89;ReadPosRankSum=-0.626;SOR=0.887;set=HC	GT:AD:AF:DP	0/1:210,75:0.26:285
chr15	42302437	rs9920824	G	C	2254.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.942;ClippingRankSum=0.000;DB;DP=288;ExcessHet=3.0103;FS=1.684;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.05;ReadPosRankSum=0.511;SOR=0.852;set=HC	GT:AD:AF:DP	0/1:210,70:0.25:280
chr15	42302441	rs184656272	C	T	4448.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:72,202:0.74:274
chr15	42302520	rs9919954	C	T	968.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:91,53:0.37:144
chr15	42302590	rs1668568	A	G	690.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:14,29:0.67:43
chr15	42305769	rs75965569	GC	AT	1714.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.257;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=1.022;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.82;ReadPosRankSum=-1.971;SOR=0.550;set=HC	GT:AD:AF:DP	0/1:29,43:0.60:72
chr15	42305773	rs62004282	A	G	1740.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.892;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.85;ReadPosRankSum=-2.137;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:29,44:0.60:73
chr15	42305852	rs10625152	A	AGAG	3918.73	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:60,98:0.62:158
chr15	42305998	rs1668565	T	C	3086.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:49,91:0.65:140
chr15	42306007	rs201095747	AT	A	1582.73	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:71,45:0.39:116
chr15	42306011	.	C	G	1609.77	.	AC=1;AF=0.500;AN=2;DP=113;set=Intersection	GT:AD:AF:DP	0/1:67,45:0.40:112
chr15	42306015	rs1668564	G	A	2481.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:43,63:0.59:106
chr15	42311454	rs2724935	T	G	984.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr15	42362298	rs12906547	T	G	572.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:21,28:0.57:49
chr15	42362821	rs2459692	C	G	1261.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr15	42363769	rs1668589	A	G	2804.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:59,120:0.67:179
chr15	42364652	rs1668587	G	A	824.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr15	42371752	rs4924618	A	T	915.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:27,38:0.58:65
chr15	42373432	rs600415	C	T	290.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:32,15:0.32:47
chr15	42373810	rs11635685	G	C	5030.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:119,228:0.66:347
chr15	42374125	.	C	CTT	136.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.115;ClippingRankSum=0.000;DP=199;ExcessHet=3.0103;FS=4.187;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.415;QD=2.04;ReadPosRankSum=-0.423;SOR=0.299;set=HC	GT:AD:AF:DP	0/1:44,23:0.34:67
chr15	42377744	rs605253	C	G	2195.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:76,101:0.57:177
chr15	42433382	rs694456	A	T	3710.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:96,166:0.63:262
chr15	42433802	rs2280248	A	G	1318.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:132,74:0.36:206
chr15	42434254	rs655427	G	A	1839.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:51,84:0.62:135
chr15	42434505	rs654527	C	A	795.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:12,31:0.72:43
chr15	42434837	rs1356410	T	C	2488.77	.	AC=1;AF=0.500;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	0/1:272,143:0.34:415
chr15	42436043	rs681264	G	A	308.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:40,16:0.29:56
chr15	42436599	rs636535	T	C	237.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:5,12:0.71:17
chr15	42439376	rs4923929	G	A	4222.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr15	42440069	rs78451061	T	C	1027.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:20,44:0.69:64
chr15	42442186	rs60486546	A	G	3098.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:62,120:0.66:182
chr15	42442422	rs60506946	T	G	3813.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:106,171:0.62:277
chr15	42442741	rs73403545	A	G	4062.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:122,183:0.60:305
chr15	42442823	rs73403546	G	C	2923.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:73,133:0.65:206
chr15	42442999	rs78230130	G	T	347.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:12,16:0.57:28
chr15	42443049	rs74009020	G	A	161.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:3,7:0.70:10
chr15	42445554	rs10220859	G	T	3277.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:91,147:0.62:238
chr15	42445654	rs1703754	A	G	2087.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:43,88:0.67:131
chr15	42445679	rs681029	T	A	2093.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:37,79:0.68:116
chr15	42445724	rs624841	C	G	2469.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:43,95:0.69:138
chr15	42445987	rs1624183	A	G	789.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:12,29:0.71:41
chr15	42446208	rs678778	C	T	486.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:13,18:0.58:31
chr15	42519136	rs1678988	T	C	2875.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr15	42520760	rs1678987	C	T	2733.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr15	42520829	rs1712417	T	C	7922.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr15	42523341	rs56119841	T	TC	8878.73	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr15	42524065	rs1630294	T	C	5255.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr15	42524165	rs1712420	C	T	3514.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr15	42528444	rs78796885	T	C	691.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:85,37:0.30:122
chr15	42528676	rs1679012	C	T	1105.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:122,59:0.33:181
chr15	42529892	rs66512609	C	CT,CTTT	466.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.469;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=18.67;ReadPosRankSum=-0.451;SOR=1.402;set=HC	GT:AD:AF:DP	1/2:2,15,8:0.60,0.32:25
chr15	42531768	rs11070363	C	T	1596.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr15	42536227	.	T	TA	62.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.094;ClippingRankSum=0.000;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.49;MQRankSum=1.561;QD=2.85;ReadPosRankSum=-1.446;SOR=0.321;set=HC	GT:AD:AF:DP	0/1:15,7:0.32:22
chr15	42553218	rs5812215	AT	A	1654.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.229;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=2.507;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=21.49;ReadPosRankSum=0.606;SOR=1.028;set=HC	GT:AD:AF:DP	1/1:3,74:0.96:77
chr15	42560312	rs2412681	C	T	2291.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr15	42564369	rs4244587	CA	TG	3606.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr15	42564902	rs7181758	A	C	1194.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr15	42565588	rs2277533	C	A	1753.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:214,101:0.32:315
chr15	42568547	rs8043515	C	G	1763.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr15	42568630	rs8023678	G	A	942.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr15	42570105	rs12916792	G	C	117.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr15	42570201	rs12916523	A	G	554.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr15	42570433	rs8024390	C	T	329.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr15	42570718	rs8024732	A	G	12409.77	.	AC=2;AF=1.00;AN=2;DB;DP=488;set=Intersection	GT:AD:AF:DP	1/1:0,483:1.00:483
chr15	42573067	rs8037020	C	T	249.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr15	42575963	rs2412689	A	G	11196.77	.	AC=2;AF=1.00;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	1/1:0,399:1.00:399
chr15	42579822	rs11070371	T	C	2761.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr15	42579948	rs8037627	T	C	11318.77	.	AC=2;AF=1.00;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	1/1:0,435:1.00:435
chr15	42580106	rs8036596	A	C	3295.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.52;SOR=2.628;set=HC	GT:AD:AF:DP	1/1:0,108:1.00:108
chr15	42584909	rs4923939	C	T	9110.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:0,333:1.00:333
chr15	42589987	rs4924651	T	C	1955.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.46;SOR=1.559;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr15	42589996	rs4924652	C	T	1955.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.48;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr15	42590034	rs72029141	TATTCATTC	T	415.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr15	42603083	rs2412694	C	T	7165.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr15	42606094	rs7173358	A	G	815.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr15	42606153	rs141877658	A	AAACAACAAC,AAACAACAACAAC	2524.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=45;set=Intersection	GT:AF:DP	1/2:0.52,0.48:42
chr15	42606161	rs11637731	G	A	2870.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.91;QD=40.43;SOR=2.206;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr15	42619508	rs1659215	C	T	6597.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr15	42622968	rs71108160	CTT	C	256	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.156;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=17.07;ReadPosRankSum=-1.514;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:2,13:0.87:15
chr15	42632799	.	T	TA	71.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.452;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.78;ReadPosRankSum=-0.124;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:11,8:0.42:19
chr15	42694944	rs2241827	T	C	2249.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr15	42701688	rs3115883	T	C	1674.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:22,75:0.77:97
chr15	42703356	rs116852089	G	A	440.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:33,20:0.38:53
chr15	42703406	rs3115884	T	C	1692.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:37,73:0.66:110
chr15	42703886	.	CG	C	92.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.321;ClippingRankSum=0.000;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.43;MQRankSum=0.000;QD=6.18;ReadPosRankSum=0.185;SOR=1.473;set=HC	GT:AD:AF:DP	0/1:5,10:0.67:15
chr15	42704105	rs3098423	C	T	8126.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:0,327:1.00:327
chr15	42714195	.	G	GA	87.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.367;ClippingRankSum=0.000;DP=162;ExcessHet=3.0103;FS=1.772;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=2.117;QD=0.59;ReadPosRankSum=0.782;SOR=0.898;set=HC	GT:AD:AF:DP	0/1:123,25:0.17:148
chr15	42727621	rs35896246	G	A	1829.77	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:246,110:0.31:356
chr15	42758159	rs2244773	T	A	1006.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr15	42764519	rs7177521	G	C	7739.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr15	42805000	rs4573906	G	A	959.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr15	42820451	rs9302112	C	T	3586.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.18;SOR=1.122;set=HC	GT:AD:AF:DP	1/1:0,137:1.00:137
chr15	42840686	rs113811622	A	T	3128.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:60,133:0.69:193
chr15	42851464	rs11070374	C	T	1850.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr15	42930891	rs1197550	A	T	2118.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr15	43025476	rs34650750	C	CT	378.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.276;ClippingRankSum=0.000;DB;DP=440;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=0.000;QD=1.08;ReadPosRankSum=1.558;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:283,69:0.20:352
chr15	43037302	.	TA	T	107.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.363;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.58;ReadPosRankSum=2.606;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:51,17:0.25:68
chr15	43075531	rs9920092	C	T	589.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr15	43109127	.	C	CAT	720.73	.	AC=1;AF=0.500;AN=2;DP=42;set=Intersection	GT:AD:AF:DP	0/1:12,26:0.68:38
chr15	43170690	rs10650948	T	TAC	1351.73	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:24,62:0.72:86
chr15	43170725	.	A	ACT	342	.	AC=1;AF=0.500;AN=2;BRF=0.5;FR=0.5000;HP=2;HapScore=1;MGOF=16;MMLQ=28;MQ=59.96;NF=16;NR=17;PP=342;QD=10.4545454545;SC=ACACACACACACTCTCTGAGA;SbPval=0.6;Source=Platypus;TC=88;TCF=43;TCR=45;TR=33;WE=43170733;WS=43170715;set=Platypus	GT:AD:AF:DP	1/0:55,33:0.38:88
chr15	43237805	rs11352938	AT	A	510.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr15	43237813	rs67230215	TTCACCATTGA	T	683.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr15	43244699	rs2277532	A	G	1732.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr15	43256121	rs2054389	T	C	1755.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr15	43262924	.	CT	C	52.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.081;ClippingRankSum=0.000;DP=39;ExcessHet=3.0103;FS=8.467;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.76;ReadPosRankSum=0.510;SOR=0.048;set=HC	GT:AD:AF:DP	0/1:20,10:0.33:30
chr15	43317071	rs35069201	T	C	2046.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.359;ClippingRankSum=0.000;DB;DP=478;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.35;ReadPosRankSum=-1.520;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:347,124:0.26:471
chr15	43322113	rs3736054	C	A	3780.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr15	43324942	rs6493077	C	T	925.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr15	43328663	rs3784265	C	T	1110.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr15	43330175	rs7166596	A	T	3474.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr15	43351786	rs36021315	CA	C	107.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.239;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.63;MQRankSum=0.775;QD=6.34;ReadPosRankSum=0.970;SOR=1.739;set=HC	GT:AD:AF:DP	0/1:5,12:0.71:17
chr15	43352041	rs4924704	G	A	2313.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr15	43360287	rs375762522	TA	T	68.80	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.77;QD=11.47;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr15	43398107	rs200780188	GA	G	3927.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:82,158:0.66:240
chr15	43398108	rs68062403	A	G	1152.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:165,75:0.31:240
chr15	43453056	rs11070392	C	G	1408.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr15	43478113	rs540587	G	C	8714.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:0,325:1.00:325
chr15	43478511	rs530118	C	T	4754.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr15	43481299	rs6493079	A	G	627.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.593;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=1.939;MLEAC=2;MLEAF=1.000;MQ=66.15;MQRankSum=5.431;QD=17.44;ReadPosRankSum=1.257;SOR=0.269;set=HC	GT:AD:AF:DP	1/1:6,30:0.83:36
chr15	43483537	rs495286	T	C	169.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.26;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr15	43527236	rs579178	A	G	1773.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr15	43568999	rs530683	C	T	2268.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr15	43585520	rs538238	T	C	244.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:20,13:0.39:33
chr15	43632549	rs2278857	T	C	1843.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:169,100:0.37:269
chr15	43637985	rs6493083	T	C	428.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:66,25:0.27:91
chr15	43643901	rs7181634	A	G	635.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:60,34:0.36:94
chr15	43653322	rs35278805	G	A	945.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:120,50:0.29:170
chr15	43658935	rs3917221	C	T	2150.77	.	AC=1;AF=0.500;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	0/1:232,115:0.33:347
chr15	43661802	rs3809482	T	C	2566.77	.	AC=1;AF=0.500;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	0/1:268,141:0.34:409
chr15	43698973	rs138616933	T	TTTATC	346.73	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:10,10:0.50:20
chr15	43701946	rs56813954	TA	T	161.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.111;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=3.037;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.37;ReadPosRankSum=0.561;SOR=1.297;set=HC	GT:AD:AF:DP	0/1:31,17:0.35:48
chr15	43707808	rs2230451	A	T	1507.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:146,78:0.35:224
chr15	43708737	rs16957715	T	G	209.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.002;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.96;ReadPosRankSum=1.770;SOR=0.484;set=HC	GT:AD:AF:DP	0/1:41,12:0.23:53
chr15	43712337	rs62021180	A	G	149.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:32,11:0.26:43
chr15	43720155	rs35437737	C	CA	224.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.389;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=3.323;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.78;ReadPosRankSum=0.733;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:27,20:0.43:47
chr15	43720533	rs2249952	G	C	402.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:27,17:0.39:44
chr15	43724646	rs2602141	T	G	2554.77	.	AC=1;AF=0.500;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	0/1:245,134:0.35:379
chr15	43730486	rs16957730	A	G	1085.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:95,54:0.36:149
chr15	43739686	.	GA	G	167.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.835;ClippingRankSum=0.000;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.49;ReadPosRankSum=2.330;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:27,21:0.44:48
chr15	43748304	rs690367	A	G	4022.77	.	AC=1;AF=0.500;AN=2;DB;DP=472;set=Intersection	GT:AD:AF:DP	0/1:271,190:0.41:461
chr15	43761921	rs7181783	A	C	68.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.623;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.46;ReadPosRankSum=0.524;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chr15	43767774	rs560191	G	C	382.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:78,26:0.25:104
chr15	43773036	rs7173383	A	C	88.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.792;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.28;ReadPosRankSum=0.982;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:32,7:0.18:39
chr15	43784000	rs555252	C	T	7990.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr15	43815999	rs3862138	C	T	1839.77	.	AC=1;AF=0.500;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	0/1:239,103:0.30:342
chr15	43816917	rs1060939	G	A	1809.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:184,95:0.34:279
chr15	43817404	rs12912505	G	A	7445.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.586;ClippingRankSum=0.000;DB;DP=584;ExcessHet=3.0103;FS=2.611;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.11;ReadPosRankSum=0.200;SOR=0.939;set=HC	GT:AD:AF:DP	0/1:363,205:0.36:568
chr15	43817404	.	GAT	AAC	2944	.	AC=1;AF=0.500;AN=2;BRF=0.45;FR=0.5000;HP=1;HapScore=1;MGOF=1;MMLQ=24;MQ=60.0;NF=90;NR=43;PP=2944;QD=20;SC=GCAGGCCGAGGATACCTCTCA;SbPval=0.76;Source=Platypus;TC=403;TCF=251;TCR=152;TR=133;WE=43817414;WS=43817394;set=Platypus	GT:AD:AF:DP	1/0:270,133:0.33:403
chr15	43817406	rs480108	T	C	7445.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.297;ClippingRankSum=0.000;DB;DP=596;ExcessHet=3.0103;FS=3.440;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.84;ReadPosRankSum=0.837;SOR=0.952;set=HC	GT:AD:AF:DP	0/1:374,206:0.36:580
chr15	43818079	rs62020612	G	A	3405.77	.	AC=1;AF=0.500;AN=2;DB;DP=451;set=Intersection	GT:AD:AF:DP	0/1:267,175:0.40:442
chr15	43891235	rs56397895	G	C	1100.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:162,61:0.27:223
chr15	43893733	rs74643365	C	T	3692.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:90,172:0.66:262
chr15	43900153	rs150548868	C	T	1419.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:113,74:0.40:187
chr15	43903198	.	TTG	T	1445.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.452;ClippingRankSum=0.000;DP=422;ExcessHet=3.0103;FS=9.021;MLEAC=1;MLEAF=0.500;MQ=56.78;MQRankSum=-1.059;QD=6.02;ReadPosRankSum=1.420;SOR=1.395;set=HC	GT:AD:AF:DP	0/1:156,84:0.35:240
chr15	43924608	rs56226333	T	C	911.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:83,48:0.37:131
chr15	43925134	rs7169097	TT	AG	1033.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.116;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=1.882;JOINED;MLEAC=1;MLEAF=0.500;MQ=42.45;MQRankSum=-1.358;QD=12.92;ReadPosRankSum=2.083;SOR=1.188;set=HC	GT:AD:AF:DP	0/1:51,29:0.36:80
chr15	43925140	rs7167634	A	G	1020.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.135;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=3.854;MLEAC=1;MLEAF=0.500;MQ=40.55;MQRankSum=0.021;QD=15.01;ReadPosRankSum=1.375;SOR=0.110;set=HC	GT:AD:AF:DP	0/1:40,28:0.41:68
chr15	43925147	rs7169112	T	G	912.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.641;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.500;MQ=39.79;MQRankSum=-0.267;QD=15.21;ReadPosRankSum=2.310;SOR=0.100;set=HC	GT:AD:AF:DP	0/1:36,24:0.40:60
chr15	43927370	rs12898584	T	C	1172.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.114;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=3.216;MLEAC=1;MLEAF=0.500;MQ=48.06;MQRankSum=1.448;QD=7.87;ReadPosRankSum=0.010;SOR=0.455;set=HC	GT:AD:AF:DP	0/1:94,55:0.37:149
chr15	43927623	rs375933133	CA	C	1012.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.541;ClippingRankSum=0.000;DB;DP=548;ExcessHet=3.0103;FS=0.424;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=1.661;QD=2.13;ReadPosRankSum=-0.613;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:337,139:0.29:476
chr15	43941125	rs2470122	G	C	2350.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr15	43989530	rs2927085	T	C	5167.77	.	AC=1;AF=0.500;AN=2;DB;DP=788;set=Intersection	GT:AD:AF:DP	0/1:497,289:0.37:786
chr15	43995786	rs3110081	C	T	1238.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.322;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.91;MQRankSum=-3.327;QD=9.53;ReadPosRankSum=-1.911;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:92,38:0.29:130
chr15	43995789	rs2470135	C	T	1238.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.526;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.88;MQRankSum=-3.527;QD=10.07;ReadPosRankSum=-1.215;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:88,35:0.28:123
chr15	43995962	rs142194775	G	T	402.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:86,27:0.24:113
chr15	44002670	rs373529135	TTG	T	603.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.475;ClippingRankSum=0.000;DB;DP=241;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.02;MQRankSum=-3.026;QD=3.73;ReadPosRankSum=-1.510;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:125,37:0.23:162
chr15	44028569	rs56181031	G	C	851.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.145;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=44.25;MQRankSum=-0.823;QD=16.70;ReadPosRankSum=0.423;SOR=0.897;set=HC	GT:AD:AF:DP	0/1:19,32:0.63:51
chr15	44037323	rs139632509	C	T	484.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.875;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=0.731;MLEAC=1;MLEAF=0.500;MQ=56.84;MQRankSum=0.398;QD=3.62;ReadPosRankSum=0.628;SOR=0.802;set=HC	GT:AD:AF:DP	0/1:99,35:0.26:134
chr15	44038899	rs2411284	C	T	3536.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.205;ClippingRankSum=0.000;DB;DP=305;ExcessHet=3.0103;FS=0.423;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=0.262;QD=11.87;ReadPosRankSum=1.241;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:129,169:0.57:298
chr15	44053617	rs8040336	C	T	866.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:25,32:0.56:57
chr15	44061802	rs1053492	C	T	4220.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:100,190:0.66:290
chr15	44062874	rs7181912	A	T	1124.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.062;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=1.943;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.55;ReadPosRankSum=1.235;SOR=1.048;set=HC	GT:AD:AF:DP	0/1:32,51:0.61:83
chr15	44068160	rs3844075	C	G	3272.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:77,136:0.64:213
chr15	44084705	rs4644832	G	A	9492.77	.	AC=1;AF=0.500;AN=2;DB;DP=630;set=Intersection	GT:AD:AF:DP	0/1:211,411:0.66:622
chr15	44090251	.	C	CT	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.374;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.91;ReadPosRankSum=1.702;SOR=0.954;set=HC	GT:AD:AF:DP	0/1:29,9:0.24:38
chr15	44090854	rs654276	T	C	684.18	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:3,27:0.90:30
chr15	44091351	rs656473	A	T	2464.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:1,91:0.99:92
chr15	44093040	rs150585298	T	C	198.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:21,12:0.36:33
chr15	44107382	.	G	GT	73.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.064;ClippingRankSum=0.000;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.47;ReadPosRankSum=-0.297;SOR=0.210;set=HC	GT:AD:AF:DP	0/1:35,15:0.30:50
chr15	44119313	rs3832984	CA	C	2689.73	.	AC=1;AF=0.500;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	0/1:243,101:0.29:344
chr15	44120412	rs142964939	A	G	1942.77	.	AC=1;AF=0.500;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	0/1:247,108:0.30:355
chr15	44120559	rs678084	T	G	3642.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:55,152:0.73:207
chr15	44211620	.	C	T	1870.77	.	AC=1;AF=0.500;AN=2;DP=106;set=Intersection	GT:AD:AF:DP	0/1:23,80:0.78:103
chr15	44211868	rs2016840	G	A	536.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:72,30:0.29:102
chr15	44216559	rs5812256	C	CT	436.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.938;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=0.823;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.000;QD=2.99;ReadPosRankSum=-0.274;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:98,48:0.33:146
chr15	44599410	rs199591388	CT	C	266.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.984;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=3.295;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.000;QD=2.19;ReadPosRankSum=-0.136;SOR=0.392;set=HC	GT:AD:AF:DP	0/1:78,44:0.36:122
chr15	44793978	.	T	A	217.77	.	AC=1;AF=0.500;AN=2;DP=55;set=Intersection	GT:AD:AF:DP	0/1:39,15:0.28:54
chr15	44855454	rs61732733	C	T	1145.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:62,54:0.47:116
chr15	44903285	rs12909507	C	A	651.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.16;SOR=2.494;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr15	44949206	rs201913015	T	TA	39.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.330;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.75;ReadPosRankSum=1.376;SOR=0.264;set=HC	GT:AD:AF:DP	0/1:42,11:0.21:53
chr15	44966389	rs8026845	T	C	7611.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr15	45028919	rs11388295	C	CT	1609.73	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:37,91:0.71:128
chr15	45047134	rs2470911	G	A	7284.77	.	AC=1;AF=0.500;AN=2;DB;DP=543;set=Intersection	GT:AD:AF:DP	0/1:203,330:0.62:533
chr15	45047573	rs3100139	C	T	1196.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:1,41:0.98:42
chr15	45048757	rs3759881	T	A	952.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr15	45059390	rs6493127	C	T	2472.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr15	45060014	rs3100143	A	T	4204.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr15	45120679	.	C	T	937.77	.	AC=1;AF=0.500;AN=2;DP=120;set=Intersection	GT:AD:AF:DP	0/1:68,49:0.42:117
chr15	45123909	.	TA	T	261.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.555;ClippingRankSum=0.000;DP=116;ExcessHet=3.0103;FS=0.984;MLEAC=1;MLEAF=0.500;MQ=52.42;MQRankSum=-5.583;QD=2.81;ReadPosRankSum=0.519;SOR=0.552;set=HC	GT:AD:AF:DP	0/1:54,39:0.42:93
chr15	45216830	rs16976561	A	G	459.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:24,21:0.47:45
chr15	45217012	rs57373865	G	T	392.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:5,16:0.76:21
chr15	45250755	rs373082	CA	TG	1071.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr15	45315287	rs111900946	T	C	2417.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:40,94:0.70:134
chr15	45332514	rs201108432	T	A	383.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.741;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=22.253;MLEAC=1;MLEAF=0.500;MQ=43.69;MQRankSum=-3.794;QD=9.59;ReadPosRankSum=1.553;SOR=4.735;set=HC	GT:AD:AF:DP	0/1:24,16:0.40:40
chr15	45353230	rs2854446	C	T	2166.77	.	AC=1;AF=0.500;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	0/1:258,116:0.31:374
chr15	45357410	rs2854437	T	G	714.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:51,37:0.42:88
chr15	45361011	rs28662287	C	T	113.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.516;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=1.983;MLEAC=1;MLEAF=0.500;MQ=52.05;MQRankSum=-1.930;QD=4.21;ReadPosRankSum=-0.399;SOR=0.199;set=HC	GT:AD:AF:DP	0/1:19,8:0.30:27
chr15	45364706	rs71114308	TG	T	247.75	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.83;QD=30.97;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr15	45365762	rs78724098	T	C	447.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:26,23:0.47:49
chr15	45365790	rs56131648	T	G	307.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:20,17:0.46:37
chr15	45386806	rs56323146	G	C	3720.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:83,166:0.67:249
chr15	45387550	rs199138	A	G	569.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.792;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=5.368;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.50;ReadPosRankSum=2.032;SOR=1.280;set=HC	GT:AD:AF:DP	0/1:128,35:0.21:163
chr15	45388382	rs2554451	C	T	537.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:44,28:0.39:72
chr15	45391455	rs56833067	A	G	474.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:10,23:0.70:33
chr15	45391566	rs269869	A	T	3040.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr15	45392075	rs269868	G	A	1610.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:139,80:0.37:219
chr15	45393014	rs61730030	G	C	2327.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:63,105:0.62:168
chr15	45397831	rs73406330	G	A	2372.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:57,98:0.63:155
chr15	45397889	rs73406334	C	T	5570.77	.	AC=1;AF=0.500;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	0/1:119,250:0.68:369
chr15	45398231	rs73406335	T	G	628.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:9,22:0.71:31
chr15	45398314	rs73406337	G	A	1432.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:30,64:0.68:94
chr15	45398369	rs113400262	C	T	2025.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:55,91:0.62:146
chr15	45398438	rs57659670	T	C	2176.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:61,102:0.63:163
chr15	45398965	rs269862	G	T	384.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.842;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.70;ReadPosRankSum=1.846;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:80,24:0.23:104
chr15	45399467	rs190599	A	G	6213.77	.	AC=1;AF=0.500;AN=2;DB;DP=994;set=Intersection	GT:AD:AF:DP	0/1:640,339:0.35:979
chr15	45400164	rs269861	T	C	1998.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr15	45400358	rs269860	C	G	11781.77	.	AC=2;AF=1.00;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	1/1:0,449:1.00:449
chr15	45401636	rs1961660	C	T	701.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:21,28:0.57:49
chr15	45404066	rs2001616	G	A	2163.77	.	AC=1;AF=0.500;AN=2;DB;DP=439;set=Intersection	GT:AD:AF:DP	0/1:306,130:0.30:436
chr15	45404693	rs751151	C	T	417.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:12,16:0.57:28
chr15	45404979	rs182090	T	G	9467.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:0,355:1.00:355
chr15	45405463	rs269856	G	T	1126.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:103,55:0.35:158
chr15	45408414	rs2576090	C	G	8578.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr15	45408691	rs2576091	C	G	3151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.662;ClippingRankSum=0.000;DB;DP=267;ExcessHet=3.0103;FS=4.510;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.98;ReadPosRankSum=-0.680;SOR=0.984;set=HC	GT:AD:AF:DP	0/1:175,88:0.33:263
chr15	45408699	rs2252371	C	T	3204.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.720;ClippingRankSum=0.000;DB;DP=287;ExcessHet=3.0103;FS=3.541;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.36;ReadPosRankSum=0.057;SOR=0.919;set=HC	GT:AD:AF:DP	0/1:189,93:0.33:282
chr15	45408710	rs2554459	A	G	8082.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr15	45408933	rs2576092	T	C	701.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:66,39:0.37:105
chr15	45409271	rs955152	C	T	789.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:89,43:0.33:132
chr15	45409732	rs61751061	C	G	2259.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.056;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=1.203;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.06;ReadPosRankSum=3.289;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:69,104:0.60:173
chr15	45409761	rs149711152	A	G	2127.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:49,94:0.66:143
chr15	45411633	rs12910807	A	T	754.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:84,43:0.34:127
chr15	45413419	.	GC	AA	1484.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.963;ClippingRankSum=0.000;DP=292;ExcessHet=3.0103;FS=0.546;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.17;ReadPosRankSum=-1.554;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:231,56:0.20:287
chr15	45414504	rs1863469	T	A	5156.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:109,229:0.68:338
chr15	45424286	rs1706810	C	G	1275.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:16,55:0.77:71
chr15	45427943	rs201018426	G	T	73.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=24.43;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr15	45428712	rs72724253	C	T	1031.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.165;ClippingRankSum=0.000;DB;DP=243;ExcessHet=3.0103;FS=2.511;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.32;ReadPosRankSum=0.982;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:174,65:0.27:239
chr15	45434493	rs2292464	C	T	371.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr15	45435217	rs2292465	T	C	1996.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr15	45439910	rs938129	A	G	4834.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr15	45445692	.	ATGTGTGTGTGTGTGTG	A,ATG	3540.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.400;ClippingRankSum=0.000;DP=222;ExcessHet=3.0103;FS=2.917;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.15;MQRankSum=0.314;QD=36.50;ReadPosRankSum=1.545;SOR=1.872;set=HC	GT:AD:AF:DP	1/2:2,39,56:0.40,0.58:97
chr15	45446084	rs11306605	CA	C	1373.92	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.885;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=2.354;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=11.08;ReadPosRankSum=0.829;SOR=0.401;set=HC	GT:AD:AF:DP	1/1:17,107:0.86:124
chr15	45457106	rs12438755	G	T	8034.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr15	45457127	rs7169193	C	T	5996.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr15	45467540	rs1632144	C	G	3623.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:1,137:0.99:138
chr15	45544319	rs2899376	T	G	254.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr15	45545378	rs17215668	GC	G	2450.73	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr15	45545478	rs11854484	C	T	5453.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr15	45554267	rs1060896	C	A	8529.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr15	45556829	rs11631021	A	G	1275.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr15	45557456	rs11632419	C	A	4592.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr15	45557468	rs2271438	A	G	3949.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr15	45561868	rs2413769	C	A	849.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr15	45707693	.	C	CA	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.465;ClippingRankSum=0.000;DP=26;ExcessHet=3.0103;FS=10.620;MLEAC=1;MLEAF=0.500;MQ=60.42;MQRankSum=1.160;QD=2.35;ReadPosRankSum=-1.694;SOR=0.025;set=HC	GT:AD:AF:DP	0/1:13,9:0.41:22
chr15	45783104	rs374498597	A	T	1537.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:42,70:0.62:112
chr15	45893625	.	A	G	860.77	.	AC=1;AF=0.500;AN=2;DP=44;set=Intersection	GT:AD:AF:DP	0/1:11,33:0.75:44
chr15	45894485	.	CT	C	59.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.075;ClippingRankSum=0.000;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.22;ReadPosRankSum=1.104;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:38,11:0.22:49
chr15	45951064	rs16946633	T	G	272.78	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:2,11:0.85:13
chr15	45951409	rs55658411	A	T	130.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.998;ClippingRankSum=-0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.72;ReadPosRankSum=1.260;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:8,7:0.47:15
chr15	45951413	rs56364627	T	A	166.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.352;ClippingRankSum=-0.000;DB;DP=18;ExcessHet=3.0103;FS=2.158;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.12;ReadPosRankSum=-0.851;SOR=1.501;set=HC	GT:AD:AF:DP	0/1:7,8:0.53:15
chr15	45966101	rs16946821	C	T	453.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:5,19:0.79:24
chr15	45968435	rs1044032	T	C	3316.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:68,142:0.68:210
chr15	45968535	rs12914266	A	C	2899.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr15	47873477	rs4775698	T	G	284.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:34,15:0.31:49
chr15	47873549	rs4775699	C	T	559.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:52,32:0.38:84
chr15	47873605	rs4774498	T	A	2721.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr15	47873773	rs8039513	A	G	363.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:6,14:0.70:20
chr15	48053730	rs9920019	A	G	438.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:41,21:0.34:62
chr15	48058071	rs532598	G	A	1608.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:150,87:0.37:237
chr15	48058484	rs528882	G	T	197.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.395;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=1.775;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.65;ReadPosRankSum=-0.961;SOR=0.336;set=HC	GT:AD:AF:DP	0/1:21,14:0.40:35
chr15	48058687	.	G	GT	107.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.118;ClippingRankSum=0.000;DP=110;ExcessHet=3.0103;FS=11.739;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.01;ReadPosRankSum=0.063;SOR=2.120;set=HC	GT:AD:AF:DP	0/1:85,22:0.21:107
chr15	48059137	rs11353659	CT	C	59.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.384;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.87;ReadPosRankSum=0.342;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:21,11:0.34:32
chr15	48063076	rs568215	T	C	1800.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:194,98:0.34:292
chr15	48443699	rs2470103	T	C	14284.77	.	AC=2;AF=1.00;AN=2;DB;DP=551;set=Intersection	GT:AD:AF:DP	1/1:0,543:1.00:543
chr15	48450517	rs3736482	T	C	2702.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr15	48460786	rs11070626	T	C	3029.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr15	48460927	rs8023906	C	T	11624.77	.	AC=2;AF=1.00;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	1/1:0,441:1.00:441
chr15	48520699	rs1484547	T	C	645.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr15	48528986	rs190866200	C	T	223.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:9,11:0.55:20
chr15	48538979	rs35669481	A	AAAC	1841.73	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:6,43:0.88:49
chr15	48539026	rs11636073	A	T	6843.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr15	48539043	rs8028035	G	A	7726.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr15	48539587	rs6493311	T	C	4700.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:136,222:0.62:358
chr15	48541700	rs2279365	G	A	3507.77	.	AC=1;AF=0.500;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	0/1:263,180:0.41:443
chr15	48547976	rs2291340	T	C	3560.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:76,154:0.67:230
chr15	48561834	rs1484551	A	G	5510.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr15	48580573	rs12442530	A	T	838.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:8,32:0.80:40
chr15	48580713	rs1552311	T	C	2099.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr15	48584083	rs2291342	A	C	1688.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:42,76:0.64:118
chr15	48591267	rs35405890	C	T	3052.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:87,139:0.62:226
chr15	48594823	.	C	CAAAA	517	.	AC=2;AF=1.00;AN=2;BRF=0.57;FR=1.0000;HP=20;HapScore=1;MGOF=25;MMLQ=24;MQ=49.89;NF=5;NR=1;PP=517;QD=86.6666666667;SC=GACTCCGTCTCAAAAAAAAAA;SbPval=0.66;Source=Platypus;TC=6;TCF=5;TCR=1;TR=6;WE=48594831;WS=48594813;set=Platypus	GT:AD:AF:DP	1/1:0,6:1.00:6
chr15	48623248	rs66822811	TCGGGCGCGGTGTCTTGCCCACAGCTTGGGGAGCGGCCC	T	300.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.639;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=1.908;QD=6.14;ReadPosRankSum=-0.715;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:38,11:0.22:49
chr15	48623500	rs12592155	C	A	1830.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:47,78:0.62:125
chr15	48623524	rs12592157	C	G	1437.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:39,63:0.62:102
chr15	48712699	rs3214528	AT	A	312.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.910;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=2.601;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=1.339;QD=4.81;ReadPosRankSum=0.475;SOR=0.131;set=HC	GT:AD:AF:DP	0/1:41,24:0.37:65
chr15	48713996	rs1820488	G	T	1552.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr15	48720526	rs363832	G	C	398.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:61,23:0.27:84
chr15	48729648	rs2042746	T	C	1764.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr15	48736684	rs2303502	A	T	1937.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:207,105:0.34:312
chr15	48749040	rs112092957	C	CGT,CGTGTGTGTGTGTGT	1325.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-2.134;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=3.869;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.97;MQRankSum=0.000;QD=30.83;ReadPosRankSum=-1.197;SOR=2.566;set=HC	GT:AD:AF:DP	1/2:5,15,23:0.35,0.53:43
chr15	48755168	rs9806595	T	C	980.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.573;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.51;ReadPosRankSum=-1.601;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:15,41:0.73:56
chr15	48755449	.	G	A	2242.77	.	AC=1;AF=0.500;AN=2;DP=172;set=Intersection	GT:AD:AF:DP	0/1:72,98:0.58:170
chr15	48755472	rs77105137	G	A	1794.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:58,74:0.56:132
chr15	48758132	rs55694948	A	C	1522.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:24,54:0.69:78
chr15	48764655	rs67860867	TA	T	343.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.846;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=2.006;MLEAC=1;MLEAF=0.500;MQ=60.40;MQRankSum=2.289;QD=3.44;ReadPosRankSum=0.738;SOR=0.483;set=HC	GT:AD:AF:DP	0/1:54,46:0.46:100
chr15	48779200	rs72132658	AATAAC	A	1897.73	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:26,56:0.68:82
chr15	48779352	rs137854475	C	T	4934.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:137,218:0.61:355
chr15	48780504	rs143836403	TTAAAGA	T	11618.73	.	AC=1;AF=0.500;AN=2;DB;DP=485;set=Intersection	GT:AD:AF:DP	0/1:159,293:0.65:452
chr15	48787245	rs6493325	T	C	1564.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:51,73:0.59:124
chr15	48789634	rs140605	T	C	1687.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:27,66:0.71:93
chr15	48805637	rs2306352	G	A	3163.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:63,142:0.69:205
chr15	48807637	rs4775765	C	T	5312.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr15	48826427	.	G	GA	174.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.884;ClippingRankSum=0.000;DP=95;ExcessHet=3.0103;FS=1.092;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=2.275;QD=2.36;ReadPosRankSum=-0.065;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:54,20:0.27:74
chr15	48903126	rs1018148	A	G	977.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:82,52:0.39:134
chr15	49009405	rs11334885	AT	A	275.52	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.329;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=4.357;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=0.600;QD=9.50;ReadPosRankSum=-1.914;SOR=2.833;set=HC	GT:AD:AF:DP	0/1:5,24:0.83:29
chr15	49040864	rs34352957	TA	T	527.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.381;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=0.510;QD=13.19;ReadPosRankSum=1.445;SOR=0.368;set=HC	GT:AD:AF:DP	1/1:4,36:0.90:40
chr15	49083577	rs58156069	C	T	3619.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr15	49097728	rs199801709	G	GTC	220.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.517;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.97;ReadPosRankSum=0.061;SOR=0.879;set=HC	GT:AD:AF:DP	0/1:20,17:0.46:37
chr15	49097733	rs34518970	T	TC	240.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.108;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.17;ReadPosRankSum=-0.818;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:18,21:0.54:39
chr15	49098016	rs1426200	C	A	1619.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr15	49118087	rs3743292	C	T	2497.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr15	49135892	rs882824	C	T	667.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr15	49143232	rs17467239	G	T	2122.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:2,75:0.97:77
chr15	49149828	rs4774526	C	T	1905.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr15	49168649	rs34156861	TAC	T	504.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr15	49168841	rs34224664	G	A	2002.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr15	49293194	rs11854184	C	A	3146.77	.	AC=1;AF=0.500;AN=2;DB;DP=497;set=Intersection	GT:AD:AF:DP	0/1:320,172:0.35:492
chr15	49325289	rs11638215	A	C	2191.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:217,112:0.34:329
chr15	49421868	rs507054	T	G	325.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:14,15:0.52:29
chr15	49422885	rs2289389	T	G	674.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:84,37:0.31:121
chr15	49423098	rs2289390	C	T	212.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr15	49426048	rs11858814	G	A	168.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:38,12:0.24:50
chr15	49431940	rs143802604	A	G	152.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:13,7:0.35:20
chr15	49461248	rs577659	C	T	1521.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:54,73:0.57:127
chr15	49493250	rs10629223	A	AGT	99.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.881;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=2.315;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.99;ReadPosRankSum=0.800;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:13,7:0.35:20
chr15	49527624	rs55979115	T	C	423.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:22,21:0.49:43
chr15	49620971	rs5812480	AT	A	495.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.250;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=4.568;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.27;ReadPosRankSum=-0.796;SOR=2.985;set=HC	GT:AD:AF:DP	0/1:7,37:0.84:44
chr15	49663405	rs12903238	G	A	196.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chr15	49716845	rs16962440	T	C	303.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:6,13:0.68:19
chr15	49800394	rs58845336	G	A	1307.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:34,56:0.62:90
chr15	49867122	rs12901416	A	G	742.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr15	49867148	rs12902794	T	C	1040.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr15	49867323	rs12902107	G	A	1650.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr15	50152274	rs4494483	T	A	438.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:60,26:0.30:86
chr15	50152583	rs4774549	G	T	3765.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr15	50158695	rs11630021	C	A	2444.77	.	AC=1;AF=0.500;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	0/1:254,131:0.34:385
chr15	50189303	rs2413975	A	G	406.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr15	50189448	rs2413976	C	A	3853.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.13;SOR=1.627;set=HC	GT:AD:AF:DP	1/1:0,137:1.00:137
chr15	50193553	rs2009833	G	A	142.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:12,8:0.40:20
chr15	50226313	rs2452524	G	T	3464.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:95,161:0.63:256
chr15	50254280	rs12442430	T	C	410.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:19,20:0.51:39
chr15	50289094	rs72734852	C	A	1819.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:45,78:0.63:123
chr15	50311135	rs12591825	C	A	2324.77	.	AC=1;AF=0.500;AN=2;DB;DP=567;set=Intersection	GT:AD:AF:DP	0/1:416,151:0.27:567
chr15	50311148	rs11070741	A	G	2281.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.922;ClippingRankSum=0.000;DB;DP=546;ExcessHet=3.0103;FS=0.600;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.18;ReadPosRankSum=1.761;SOR=0.759;set=HC	GT:AD:AF:DP	0/1:404,142:0.26:546
chr15	50399011	rs56757311	C	T	177.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:4,7:0.64:11
chr15	50489677	rs1863511	A	T	4393.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr15	50497354	rs2278166	G	T	3622.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr15	50521265	rs5812509	T	TA	13919.73	.	AC=2;AF=1.00;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	1/1:1,442:1.00:443
chr15	50546935	.	TTCTCTC	T	407.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.575;ClippingRankSum=0.000;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.74;ReadPosRankSum=-0.422;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:19,13:0.41:32
chr15	50546971	rs80072362	C	G	467.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.856;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=4.228;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.59;ReadPosRankSum=-0.166;SOR=0.177;set=HC	GT:AD:AF:DP	0/1:16,14:0.47:30
chr15	50546971	.	CTC	GTG	310	.	AC=1;AF=0.500;AN=2;BRF=0.44;FR=0.5000;HP=2;HapScore=1;MGOF=25;MMLQ=28;MQ=58.95;NF=1;NR=8;PP=310;QD=40.3853194291;SC=CTCTCTCTCTCTCTGTGTGTG;SbPval=0.7;Source=Platypus;TC=31;TCF=4;TCR=27;TR=9;WE=50546981;WS=50546961;set=Platypus	GT:AD:AF:DP	0/1:22,9:0.29:31
chr15	50546973	rs79724974	C	G	470.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.975;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=2.049;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.81;ReadPosRankSum=0.558;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:16,12:0.43:28
chr15	50555710	rs854160	T	C	682.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;MQ=59.96;set=Intersection	GT:AD:AF:DP	0/1:50,36:0.42:86
chr15	50570999	rs11372405	G	GT	1457.73	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:5,73:0.94:78
chr15	50574621	rs11635546	G	A	262.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:16,13:0.45:29
chr15	50581634	rs34330339	T	TA	2258.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.718;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.45;MQRankSum=0.625;QD=16.37;ReadPosRankSum=-0.561;SOR=0.649;set=HC	GT:AD:AF:DP	1/1:14,124:0.90:138
chr15	50581869	rs374196509	GA	G	125.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.024;ClippingRankSum=0.000;DB;DP=450;ExcessHet=3.0103;FS=2.734;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.35;ReadPosRankSum=1.039;SOR=0.486;set=HC	GT:AD:AF:DP	0/1:293,67:0.19:360
chr15	50593136	.	G	A	845.77	.	AC=1;AF=0.500;AN=2;DP=164;set=Intersection	GT:AD:AF:DP	0/1:109,48:0.31:157
chr15	50596070	rs7164798	T	C	508.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:23,23:0.50:46
chr15	50596341	.	G	GA	196.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.503;ClippingRankSum=0.000;DP=91;ExcessHet=3.0103;FS=2.532;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.55;ReadPosRankSum=0.652;SOR=1.105;set=HC	GT:AD:AF:DP	0/1:56,21:0.27:77
chr15	50601811	rs11636564	T	C	2548.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr15	50602067	rs35446819	T	C	1541.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:46,70:0.60:116
chr15	50652513	rs139520399	C	CA	154.73	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:49,13:0.21:62
chr15	50731390	rs11632708	C	T	1249.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:23,56:0.71:79
chr15	50754288	rs11431370	A	AT	96.73	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr15	50754339	rs3098169	G	A	469.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:15,22:0.59:37
chr15	50773755	rs3131561	G	A	2745.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr15	50774431	rs11633608	G	A	1182.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:20,46:0.70:66
chr15	50776640	rs4775889	A	G	336.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:15,17:0.53:32
chr15	50781963	rs3098176	T	A	495.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.401;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.66;ReadPosRankSum=0.048;SOR=1.358;set=HC	GT:AD:AF:DP	0/1:4,20:0.83:24
chr15	50782335	rs2289108	G	A	295.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:18,13:0.42:31
chr15	50782434	.	G	GT	78.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.431;ClippingRankSum=0.000;DP=204;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.40;ReadPosRankSum=-0.466;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:165,33:0.17:198
chr15	50782703	rs11638390	A	G	2275.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:75,100:0.57:175
chr15	50787868	rs17598061	T	G	326.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:8,15:0.65:23
chr15	50789527	rs113527256	T	TA	1243.73	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:18,46:0.72:64
chr15	50821945	rs3098200	G	A	3431.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr15	50822178	rs62019151	T	C	2282.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr15	50833113	rs2003359	A	G	284.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr15	50836243	rs3109878	T	G	974.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr15	50836284	rs12443399	G	C	538.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr15	50844711	rs17598264	A	G	398.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.46;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr15	50854029	rs75278275	TA	T	798.70	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:8,52:0.87:60
chr15	50867082	rs473357	G	A	6508.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:1,232:1.00:233
chr15	50873262	rs2414060	A	G	1004.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr15	50878478	rs539383	G	A	592.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr15	50878509	rs1395297	T	C	1113.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr15	50878574	rs3109894	G	A	2664.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr15	50882045	rs113973270	T	TTTTTTTG	621.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr15	50885976	rs567109	G	T	1121.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr15	50888619	rs675011	A	T	1262.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr15	50899211	rs12439744	C	T	1160.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr15	50899309	rs11633404	C	A	3452.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.084;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.17;ReadPosRankSum=-1.754;SOR=0.656;set=HC	GT:AD:AF:DP	1/1:5,144:0.97:149
chr15	50901929	rs35281039	TA	T	1969.73	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:18,128:0.88:146
chr15	50903600	rs4775894	C	T	1783.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr15	50911865	rs34352984	AT	A	709.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.28;SOR=2.115;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr15	50916575	rs137968959	GATTTAC	G	453.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr15	50924995	rs2292175	G	A	883.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:1,30:0.97:31
chr15	50926516	rs62017191	C	T	1425.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr15	50926523	rs140773609	AAAAT	A	2323.73	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr15	50931600	rs117177807	A	C	1043.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:88,53:0.38:141
chr15	50935484	rs150936263	C	CA	1115.73	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:6,58:0.91:64
chr15	50941108	rs2063011	C	G	4455.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr15	50941131	rs2063010	A	G	3154.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr15	50941161	rs62017198	C	T	407.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:34,24:0.41:58
chr15	50950141	rs17645826	T	C	251.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr15	51029111	rs56330558	G	GT	31.73	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr15	51201158	rs76674534	A	G	762.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:119,46:0.28:165
chr15	51204364	rs1147129	G	A	7500.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:2,282:0.99:284
chr15	51204394	rs3214932	C	CT	9714.73	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:2,244:0.99:246
chr15	51207818	rs2663553	G	C	1475.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr15	51276128	rs2306335	A	G	52.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:23,6:0.21:29
chr15	51350655	rs76241791	AT	A	1437.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:10,70:0.88:80
chr15	51502844	rs4646	A	C	1940.77	.	AC=1;AF=0.500;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	0/1:239,111:0.32:350
chr15	51502986	rs10046	G	A	2085.77	.	AC=1;AF=0.500;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	0/1:243,119:0.33:362
chr15	51503881	rs28757202	T	A	378.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.037;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.57;ReadPosRankSum=-1.018;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:79,27:0.25:106
chr15	51503897	rs28757201	G	A	305.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.722;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=1.820;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.68;ReadPosRankSum=1.584;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:89,25:0.22:114
chr15	51504811	rs1065779	A	C	349.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:39,16:0.29:55
chr15	51507508	rs2289105	T	C	320.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:53,19:0.26:72
chr15	51507782	rs2289106	T	G	934.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:110,54:0.33:164
chr15	51507874	rs17601241	G	A	6377.77	.	AC=1;AF=0.500;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	0/1:147,288:0.66:435
chr15	51510702	rs1143704	T	A	349.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:39,19:0.33:58
chr15	51510868	rs4324076	A	C	1964.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.968;ClippingRankSum=0.000;DB;DP=344;ExcessHet=3.0103;FS=0.887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.76;ReadPosRankSum=0.455;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:226,115:0.34:341
chr15	51519869	rs149494347	C	CAATAAATAAATAAATA	136.73	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:26,4:0.13:30
chr15	51519945	rs28892005	A	AAAG	6963.73	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr15	51520206	rs1065778	T	C	481.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:66,25:0.27:91
chr15	51529112	rs700518	T	C	1090.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:102,60:0.37:162
chr15	51529265	rs3759811	T	C	497.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:46,25:0.35:71
chr15	51529349	rs10550124	GAAACA	G	188.84	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr15	51534547	rs727479	C	A	1047.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr15	51634255	rs2446421	T	G	7548.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:2,278:0.99:280
chr15	51675625	rs2445738	C	T	3367.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr15	51675932	rs11306243	AT	A	141.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.229;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=6.069;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=1.226;QD=2.95;ReadPosRankSum=-0.038;SOR=0.152;set=HC	GT:AD:AF:DP	0/1:30,18:0.38:48
chr15	51689624	rs1147142	A	C	1705.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr15	51693813	rs35223886	G	A	2360.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:63,105:0.62:168
chr15	51751091	rs111734926	TAGCAGC	T	3000.73	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr15	51758345	rs10706765	CA	C	812.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr15	51770456	rs11291027	AT	A	1492.73	.	AC=2;AF=1.00;AN=2;DB;DP=80;MQ=60.14;set=Intersection	GT:AD:AF:DP	1/1:3,74:0.96:77
chr15	51780722	rs17524750	C	T	11703.77	.	AC=2;AF=1.00;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	1/1:0,436:1.00:436
chr15	51829812	rs17524906	G	A	10481.77	.	AC=2;AF=1.00;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	1/1:0,394:1.00:394
chr15	51829995	rs12904173	T	C	3455.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:2,117:0.98:119
chr15	51981597	.	GGT	G	372.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.727;ClippingRankSum=0.000;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.92;ReadPosRankSum=0.131;SOR=0.601;set=HC	GT:AD:AF:DP	0/1:41,22:0.35:63
chr15	52005713	rs2305720	C	T	1547.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr15	52017345	rs2414116	A	G	1718.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr15	52029406	rs2606128	G	A	183.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:8,9:0.53:17
chr15	52043327	rs12903500	C	T	4672.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:113,193:0.63:306
chr15	52060657	rs61348403	C	CT	2311.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.951;ClippingRankSum=0.000;DB;DP=314;ExcessHet=3.0103;FS=0.546;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.100;QD=9.07;ReadPosRankSum=1.402;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:101,154:0.60:255
chr15	52155314	rs2570251	T	C	763.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:17,28:0.62:45
chr15	52185937	rs2959307	G	A	897.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:31,41:0.57:72
chr15	52185961	rs11370809	C	CA	809.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.551;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=2.084;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=0.000;QD=8.10;ReadPosRankSum=-1.014;SOR=1.036;set=HC	GT:AD:AF:DP	0/1:36,64:0.64:100
chr15	52186158	rs2959285	A	C	951.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:26,46:0.64:72
chr15	52192262	rs113447185	A	AGTTAT	993.73	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:17,23:0.57:40
chr15	52239380	rs2414122	C	A	261.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.685;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.47;ReadPosRankSum=0.161;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:10,11:0.52:21
chr15	52246665	rs2959293	G	A	799.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:21,38:0.64:59
chr15	52250789	rs2593187	T	C	119.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr15	52252799	rs2258248	C	T	1057.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:61,54:0.47:115
chr15	52257874	rs2241503	A	G	1207.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:22,45:0.67:67
chr15	52264094	rs17612102	T	C	853.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:77,36:0.32:113
chr15	52353498	rs35697691	C	G	2594.77	.	AC=1;AF=0.500;AN=2;DB;DP=498;set=Intersection	GT:AD:AF:DP	0/1:334,154:0.32:488
chr15	52401933	rs2231297	A	G	988.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:20,43:0.68:63
chr15	52401951	rs2227308	G	A	1309.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:27,56:0.67:83
chr15	52404862	rs2231292	A	C	2454.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:47,110:0.70:157
chr15	52404934	rs4776003	C	T	1637.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:31,72:0.70:103
chr15	52405008	rs139441006	GCCCCGGC	G	806.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.177;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=0.694;QD=27.82;ReadPosRankSum=1.271;SOR=0.498;set=HC	GT:AD:AF:DP	0/1:8,21:0.72:29
chr15	52420491	rs12909161	G	T	3207.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:83,141:0.63:224
chr15	52439779	.	C	CT	130.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.746;ClippingRankSum=0.000;DP=126;ExcessHet=3.0103;FS=16.374;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.552;QD=1.56;ReadPosRankSum=-1.173;SOR=0.032;set=HC	GT:AD:AF:DP	0/1:62,22:0.26:84
chr15	52486306	rs11855672	C	T	1294.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:14,52:0.79:66
chr15	52486335	rs59434591	G	A	107.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.246;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=1.822;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.91;ReadPosRankSum=-1.412;SOR=0.250;set=HC	GT:AD:AF:DP	0/1:28,9:0.24:37
chr15	52487523	rs3751604	T	A	578.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:53,30:0.36:83
chr15	52503895	rs34276836	T	C	2193.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:50,98:0.66:148
chr15	52504142	rs2278295	T	C	380.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:28,18:0.39:46
chr15	52505563	rs3751608	C	T	1076.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:77,55:0.42:132
chr15	52506655	rs6493546	C	T	311.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:20,14:0.41:34
chr15	52506937	rs34638854	A	AT	341.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.051;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.83;ReadPosRankSum=-0.722;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:21,29:0.58:50
chr15	52515678	rs4405492	G	T	4278.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr15	52516993	rs79704568	A	G	146.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:27,8:0.23:35
chr15	52531941	rs11635028	A	G	8507.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr15	52534344	rs3751631	G	A	5763.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr15	52539673	rs10163109	C	T	6052.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr15	52548784	.	A	ACACGCGCGCG,ACACACGCGCGCG	2529.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.403;ClippingRankSum=0.000;DP=76;ExcessHet=3.0103;FS=3.655;MLEAC=1,1;MLEAF=0.500,0.500;MQ=61.83;MQRankSum=0.408;QD=56.22;ReadPosRankSum=0.474;SOR=2.387;set=HC	GT:AD:AF:DP	1/2:2,28,15:0.62,0.33:45
chr15	52553007	rs4497629	C	G	3854.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr15	52556429	rs4776032	A	G	4668.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr15	52561891	.	A	AT	381.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.113;ClippingRankSum=0.000;DP=266;ExcessHet=3.0103;FS=3.130;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=1.791;QD=1.56;ReadPosRankSum=0.100;SOR=0.986;set=HC	GT:AD:AF:DP	0/1:191,54:0.22:245
chr15	52564191	rs3751629	T	C	597.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr15	52571270	.	G	GT	323.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.646;ClippingRankSum=0.000;DP=231;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.863;QD=1.96;ReadPosRankSum=-0.391;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:121,44:0.27:165
chr15	52587880	rs12907067	C	T	4956.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr15	52611351	rs143298463	C	T	1079.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.136;ClippingRankSum=0.000;DB;DP=301;ExcessHet=3.0103;FS=3.755;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.60;ReadPosRankSum=1.160;SOR=0.967;set=HC	GT:AD:AF:DP	0/1:225,75:0.25:300
chr15	52628489	rs8035295	T	C	592.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr15	52640990	rs11386962	T	TA	238.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:9,16:0.64:25
chr15	52656722	.	T	TA	151.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.902;ClippingRankSum=0.000;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.06;ReadPosRankSum=2.847;SOR=0.640;set=HC	GT:AD:AF:DP	0/1:114,29:0.20:143
chr15	52667552	rs2414145	G	A	7772.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr15	52668822	rs1009157	G	A	2085.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr15	52671784	rs2242058	C	T	8485.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr15	52675261	rs4774621	T	C	6187.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr15	52681573	rs1724623	A	G	2996.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;MQ=60.09;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr15	52681643	rs71425744	AT	A	483.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr15	52684004	rs1669872	C	A	1801.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr15	52689526	rs2924130	T	C	5781.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr15	52689631	rs1724577	T	G	4662.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:1,172:0.99:173
chr15	52725587	rs1917972	A	C	349.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr15	52820904	rs1693513	C	T	1977.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr15	52897478	rs2414163	T	C	2803.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr15	52901433	rs12915981	C	T	3637.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr15	52901638	rs3751614	T	C	11432.77	.	AC=2;AF=1.00;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	1/1:1,404:1.00:405
chr15	52901977	rs2414166	G	A	11969.77	.	AC=2;AF=1.00;AN=2;DB;DP=439;set=Intersection	GT:AD:AF:DP	1/1:0,432:1.00:432
chr15	52904046	rs4776063	C	A	1580.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr15	53082214	rs149161886	GTC	G	98.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.020;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.19;ReadPosRankSum=-0.609;SOR=0.553;set=HC	GT:AD:AF:DP	0/1:71,12:0.14:83
chr15	53230662	rs12050508	C	T	3488.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr15	53815527	.	AAG	A	565.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.532;ClippingRankSum=0.000;DP=228;ExcessHet=3.0103;FS=0.810;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=2.082;QD=3.47;ReadPosRankSum=0.692;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:128,35:0.21:163
chr15	53905729	rs62005937	T	C	701.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr15	53905779	rs35292476	C	T	1789.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr15	53905820	rs34829468	GA	G	2017.73	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:3,101:0.97:104
chr15	53997089	rs578595	C	A	974.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr15	53998314	rs690235	G	T	2577.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr15	54003091	rs551225	G	A	10392.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	1/1:2,380:0.99:382
chr15	54005244	rs2459380	T	A	1598.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr15	54008795	rs690337	T	C	12863.77	.	AC=2;AF=1.00;AN=2;DB;DP=507;set=Intersection	GT:AD:AF:DP	1/1:5,501:0.99:506
chr15	54008845	rs690346	T	C	12337.77	.	AC=2;AF=1.00;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	1/1:0,474:1.00:474
chr15	54008889	rs34828731	GA	G	11654.73	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr15	54008966	rs6145564	A	AGTGCTGCACTTAAGT	3243.73	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr15	54306925	rs12437941	G	A	5957.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr15	54435446	rs1897069	G	C	82.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:13,6:0.32:19
chr15	54529629	rs7162346	T	C	2250.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:53,101:0.66:154
chr15	54556259	rs12917364	A	G	2320.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:61,92:0.60:153
chr15	54592355	rs7164993	T	C	1231.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:19,51:0.73:70
chr15	54614079	.	TG	T	1941.73	.	AC=1;AF=0.500;AN=2;DP=101;set=Intersection	GT:AD:AF:DP	0/1:40,61:0.60:101
chr15	54624313	rs11856987	T	A	1412.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:25,65:0.72:90
chr15	54685448	rs73417774	G	A	568.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:57,29:0.34:86
chr15	54685463	rs489526	G	A	2051.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr15	54792428	rs8025195	A	G	365.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:33,18:0.35:51
chr15	54804450	rs9920072	C	T	1245.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:28,49:0.64:77
chr15	54841874	rs9302181	A	G	226.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:57,18:0.24:75
chr15	54847509	rs8039515	G	T	570.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:36,26:0.42:62
chr15	54847677	rs11639005	C	T	1346.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:148,72:0.33:220
chr15	54847786	rs11639014	A	G	691.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:78,38:0.33:116
chr15	54914716	rs2681964	C	T	97.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:18,6:0.25:24
chr15	54915975	rs2414332	A	T	1793.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:115,88:0.43:203
chr15	54918911	rs11856235	T	C	550.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:58,26:0.31:84
chr15	54918943	rs11852743	G	A	961.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:101,46:0.31:147
chr15	54919047	rs1520411	A	G	3478.77	.	AC=1;AF=0.500;AN=2;DB;DP=579;set=Intersection	GT:AD:AF:DP	0/1:384,191:0.33:575
chr15	55489065	rs9300	G	A	2113.77	.	AC=1;AF=0.500;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	0/1:281,123:0.30:404
chr15	55489104	rs13733	A	G	2232.77	.	AC=1;AF=0.500;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	0/1:288,130:0.31:418
chr15	55497691	rs1050931	G	A	782.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:88,42:0.32:130
chr15	55522747	rs148185523	C	T	2889.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:71,131:0.65:202
chr15	55653031	rs501231	A	G	709.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:85,42:0.33:127
chr15	55710365	rs56070549	T	C	722.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.447;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.13;ReadPosRankSum=-0.282;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:97,44:0.31:141
chr15	55710369	rs6493785	T	A	4466.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr15	55759193	rs600753	T	C	1789.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:46,87:0.65:133
chr15	55838976	rs144876912	C	G	987.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:102,51:0.33:153
chr15	55840995	rs2617227	A	G	2317.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr15	55841195	.	T	TA	80.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.134;ClippingRankSum=0.000;DP=173;ExcessHet=3.0103;FS=2.031;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.58;ReadPosRankSum=-0.703;SOR=0.463;set=HC	GT:AD:AF:DP	0/1:113,27:0.19:140
chr15	55881111	rs1992236	A	G	2212.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.98;SOR=0.742;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr15	55930984	rs188559138	C	T	300.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:20,14:0.41:34
chr15	55972660	.	C	CT	191.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.191;ClippingRankSum=0.000;DP=269;ExcessHet=3.0103;FS=8.467;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.75;ReadPosRankSum=-1.050;SOR=1.444;set=HC	GT:AD:AF:DP	0/1:206,50:0.20:256
chr15	55974742	.	T	TTTTATTTATTTA	2181.73	.	AC=2;AF=1.00;AN=2;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr15	56030543	rs12906885	G	A	4722.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr15	56030756	rs4774222	T	C	5820.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.10;SOR=1.455;set=HC	GT:AD:AF:DP	1/1:0,223:1.00:223
chr15	56032519	rs10152116	G	A	3121.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr15	56032975	rs7182733	G	A	1622.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:1,53:0.98:54
chr15	56034878	rs11632579	G	A	513.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr15	56035010	rs12910180	G	A	5006.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr15	56122347	rs2288344	T	G	1308.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:30,54:0.64:84
chr15	56122664	rs12910830	T	C	4409.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:88,201:0.70:289
chr15	56122741	rs17238461	A	C	1678.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.726;ClippingRankSum=0.000;DB;DP=296;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.69;ReadPosRankSum=-0.810;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:194,101:0.34:295
chr15	56125135	rs8024944	C	A	2390.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:66,107:0.62:173
chr15	56125182	rs8026172	T	A	2992.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:93,137:0.60:230
chr15	56130275	.	CAATAAAATACATACT	C	247.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.441;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.63;ReadPosRankSum=0.141;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:34,10:0.23:44
chr15	56130286	rs11071227	A	T	759.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:10,31:0.76:41
chr15	56130633	rs62046644	T	C	218.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.792;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=1.158;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.65;ReadPosRankSum=0.156;SOR=0.504;set=HC	GT:AD:AF:DP	0/1:45,15:0.25:60
chr15	56130692	rs62046645	T	C	550.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:97,35:0.27:132
chr15	56130909	rs8028559	A	G	234.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr15	56139153	rs2288346	T	C	1009.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr15	56140995	rs12232351	T	A	4524.77	.	AC=1;AF=0.500;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	0/1:102,208:0.67:310
chr15	56144848	rs62043760	C	T	272.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.460;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=2.432;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=-0.540;QD=3.74;ReadPosRankSum=-0.802;SOR=0.392;set=HC	GT:AD:AF:DP	0/1:55,18:0.25:73
chr15	56144888	.	AATATATATATAT	A,AAT	895.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.17;QD=37.32;SOR=1.270;set=HC	GT:AD:AF:DP	1/2:0,8,16:0.33,0.67:24
chr15	56152598	rs4774228	A	G	3986.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr15	56152729	rs2303579	T	C	6885.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr15	56152872	rs2303580	C	T	9224.77	.	AC=2;AF=1.00;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	1/1:0,342:1.00:342
chr15	56161919	rs1912402	C	T	820.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:25,38:0.60:63
chr15	56162060	.	T	TATAAATAA	1525	.	AC=2;AF=1.00;AN=2;BRF=0.2;FR=1.0000;HP=2;HapScore=1;MGOF=21;MMLQ=22;MQ=61.78;NF=0;NR=6;PP=1525;QD=255.333333333;SC=GGCAAACATATATAAATAAAT;SbPval=1.0;Source=Platypus;TC=10;TCF=1;TCR=9;TR=6;WE=56162068;WS=56162050;set=Platypus	GT:AD:AF:DP	1/1:4,6:0.60:10
chr15	56207983	rs7174459	C	T	2758.77	.	AC=1;AF=0.500;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	0/1:291,148:0.34:439
chr15	56216793	rs2271289	C	T	1355.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:118,71:0.38:189
chr15	56243792	rs10718511	TA	T	144.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.976;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=2.315;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.24;ReadPosRankSum=0.236;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:4,16:0.80:20
chr15	56258809	rs6493829	A	T	68.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.356;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=8.625;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.75;ReadPosRankSum=0.091;SOR=2.973;set=HC	GT:AD:AF:DP	0/1:18,7:0.28:25
chr15	56285936	rs5007873	G	A	575.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.281;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.56;ReadPosRankSum=-1.166;SOR=0.416;set=HC	GT:AD:AF:DP	0/1:3,25:0.89:28
chr15	56386577	rs7170589	T	G	10586.77	.	AC=2;AF=1.00;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	1/1:1,384:1.00:385
chr15	56387931	rs11071247	C	T	16570.77	.	AC=2;AF=1.00;AN=2;DB;DP=588;set=Intersection	GT:AD:AF:DP	1/1:0,579:1.00:579
chr15	56535174	rs2460649	A	G	1062.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr15	56657581	rs2682033	A	C	1987.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr15	56680944	rs1477589	T	C	447.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr15	56719797	rs795785	G	T	1239.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.83;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr15	56720715	rs1554410	T	G	1056.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr15	56721264	rs795787	G	A	2406.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr15	56721406	rs808730	C	T	3233.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr15	56923536	rs3803457	A	G	2446.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr15	56923714	rs8043381	G	A	13572.77	.	AC=2;AF=1.00;AN=2;DB;DP=510;set=Intersection	GT:AD:AF:DP	1/1:0,507:1.00:507
chr15	56946296	rs8028457	C	A	538.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr15	56946703	.	TA	T	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.687;ClippingRankSum=0.000;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.71;ReadPosRankSum=-0.516;SOR=0.506;set=HC	GT:AD:AF:DP	0/1:42,11:0.21:53
chr15	56946980	rs12911381	T	G	11963.77	.	AC=2;AF=1.00;AN=2;DB;DP=439;set=Intersection	GT:AD:AF:DP	1/1:0,433:1.00:433
chr15	56961272	rs12911191	T	A	467.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr15	56981703	rs1871861	T	A	1221.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.33;SOR=5.084;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr15	57210297	rs3803455	G	A	2118.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr15	57210562	rs213150	C	A	5464.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr15	57210627	rs2165461	G	C	2353.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr15	57364814	rs2951904	G	A	1279.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr15	57484613	rs12914481	G	A	2684.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr15	57523542	rs1037958	A	G	5953.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr15	57524756	rs2248620	G	A	4362.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr15	57524857	rs2290938	T	C	5304.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr15	57555523	rs7182038	C	A	2830.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr15	57731335	rs1280395	A	C	12475.77	.	AC=2;AF=1.00;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	1/1:0,439:1.00:439
chr15	57731573	rs7182648	C	T	9354.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	1/1:0,335:1.00:335
chr15	57731728	rs1280396	A	G	3774.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr15	57732743	rs1280398	T	C	7018.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr15	57734380	rs369072907	GAAA	G	1005.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.29;QD=31.43;SOR=5.994;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr15	57743933	rs1280406	A	G	1160.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr15	57744311	rs1018269	T	A	44.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.034;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=4.323;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.24;ReadPosRankSum=0.837;SOR=0.173;set=HC	GT:AD:AF:DP	0/1:29,7:0.19:36
chr15	57817050	rs10518925	G	A	515.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:19,24:0.56:43
chr15	57817066	rs2270488	C	G	302.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:17,14:0.45:31
chr15	57835868	rs1620315	C	G	1221.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.066;ClippingRankSum=0.000;DB;DP=288;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.26;ReadPosRankSum=-1.426;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:212,75:0.26:287
chr15	57835903	rs1620402	T	G	1279.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.777;ClippingRankSum=0.000;DB;DP=298;ExcessHet=3.0103;FS=1.564;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.31;ReadPosRankSum=-0.536;SOR=0.594;set=HC	GT:AD:AF:DP	0/1:216,81:0.27:297
chr15	57836552	rs1908189	T	C	467.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.288;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=0.896;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.59;ReadPosRankSum=0.887;SOR=0.561;set=HC	GT:AD:AF:DP	0/1:74,28:0.27:102
chr15	57836823	rs8029295	G	A	2174.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr15	57838258	rs2635390	T	C	1037.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.31;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr15	57884181	rs1690328	T	C	1172.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.487;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.849;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.96;ReadPosRankSum=-2.691;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:30,54:0.64:84
chr15	57910444	rs935548	A	G	7831.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr15	57914094	rs2934439	G	T	294.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:5,11:0.69:16
chr15	57918090	rs2958059	A	G	4801.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr15	57922169	rs59322468	A	ATTTTTTTTTTT	223.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.035;ClippingRankSum=-0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.57;MQRankSum=0.282;QD=24.86;ReadPosRankSum=0.282;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:2,7:0.78:9
chr15	57924586	rs2733593	T	A	1117.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:18,47:0.72:65
chr15	57953564	rs986868	C	T	203.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:5,9:0.64:14
chr15	57967219	rs1991252	T	C	11592.77	.	AC=2;AF=1.00;AN=2;DB;DP=455;set=Intersection	GT:AD:AF:DP	1/1:0,449:1.00:449
chr15	57967285	rs5812908	AT	A	4402.73	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:13,230:0.95:243
chr15	57976523	rs6493944	A	G	2700.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr15	57976583	rs2554032	A	C	5069.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr15	58000981	rs1062707	C	T	7077.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr15	58287415	.	C	CAA	261.74	.	AC=2;AF=1.00;AN=2;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.72;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr15	58287435	rs3985733	C	A	300.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.08;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr15	58302732	rs148200734	T	C	998.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:139,58:0.29:197
chr15	58465171	rs2292712	G	A	2597.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr15	58465483	rs2292713	C	T	490.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr15	58471368	rs2249783	C	T	3010.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr15	58476092	rs3832977	G	GA	3005.73	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:1,114:0.99:115
chr15	58476281	rs1867380	A	G	5942.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr15	58723426	rs1077835	A	G	287.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:5,11:0.69:16
chr15	58723479	rs1077834	T	C	570.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:20,26:0.57:46
chr15	58723675	rs1800588	C	T	1302.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:74,65:0.47:139
chr15	58724371	rs8192701	C	T	1619.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:143,88:0.38:231
chr15	58834741	rs690	G	T	3585.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr15	58837910	rs2414592	T	C	5139.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr15	58838010	rs6083	A	G	1911.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:182,103:0.36:285
chr15	58838038	rs6084	C	G	3785.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:116,176:0.60:292
chr15	58840450	rs1007543	A	C	4217.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr15	58853079	rs3829462	C	A	5676.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr15	58853109	rs3829461	A	G	7477.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr15	58853212	rs71964604	GAC	G	11369.73	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr15	58853218	rs55913623	C	T	11402.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr15	58853307	rs4774305	C	G	2874.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr15	58853363	rs1869129	C	T	936.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr15	58857230	rs4775080	G	C	1680.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr15	58857255	rs4775081	A	G	2554.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr15	58857378	rs17269397	A	G	3825.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:114,172:0.60:286
chr15	58891949	rs35772938	GA	G	110.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.172;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=2.268;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.26;ReadPosRankSum=-1.697;SOR=1.120;set=HC	GT:AD:AF:DP	0/1:67,21:0.24:88
chr15	58902769	rs12439189	A	C	1090.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:100,53:0.35:153
chr15	59144199	rs16940850	A	G	1938.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr15	59185929	rs4238332	T	C	360.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr15	59323048	rs2899642	C	G	673.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:69,37:0.35:106
chr15	59347757	rs1446238	G	A	109.10	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:1,5:0.83:6
chr15	59347929	rs1446239	C	A	1397.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:50,66:0.57:116
chr15	59358845	rs62002543	A	C	798.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:10,29:0.74:39
chr15	59358862	rs62002544	G	A	1080.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:19,41:0.68:60
chr15	59368167	rs7178935	G	A	3817.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:73,169:0.70:242
chr15	59368510	rs4775115	T	G	981.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:10,38:0.79:48
chr15	59373100	rs371664031	G	A	156.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.780;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.27;ReadPosRankSum=0.479;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:54,15:0.22:69
chr15	59376531	rs12915899	T	C	441.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:7,17:0.71:24
chr15	59381769	rs2289895	A	T	1092.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:17,43:0.72:60
chr15	59399501	rs11293095	CT	C	338.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.965;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=5.007;MLEAC=1;MLEAF=0.500;MQ=60.41;MQRankSum=0.852;QD=6.51;ReadPosRankSum=0.464;SOR=0.218;set=HC	GT:AD:AF:DP	0/1:23,29:0.56:52
chr15	59406581	rs8039514	T	C	1211.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:27,50:0.65:77
chr15	59415892	.	CG	C	84.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.213;ClippingRankSum=0.000;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.46;ReadPosRankSum=1.362;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:13,6:0.32:19
chr15	59415934	rs3830310	CAT	C	238.73	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,7:0.54:13
chr15	59429111	rs11539756	G	A	848.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:15,30:0.67:45
chr15	59446073	.	T	C	170.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.048;ClippingRankSum=0.000;DP=69;ExcessHet=3.0103;FS=4.938;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.47;ReadPosRankSum=1.567;SOR=1.512;set=HC	GT:AD:AF:DP	0/1:57,12:0.17:69
chr15	59453236	rs7182408	C	T	393.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:7,16:0.70:23
chr15	59453384	rs2306791	T	C	1614.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:46,75:0.62:121
chr15	59453578	rs7165444	G	A	417.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:8,19:0.70:27
chr15	59455520	rs11858347	A	C	2347.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:47,96:0.67:143
chr15	59464039	rs2306788	G	A	432.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:57,26:0.31:83
chr15	59466489	rs58124311	C	A	7122.77	.	AC=1;AF=0.500;AN=2;DB;DP=487;set=Intersection	GT:AD:AF:DP	0/1:153,325:0.68:478
chr15	59487930	rs2306786	C	G	819.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:9,30:0.77:39
chr15	59494673	rs2306787	C	T	1167.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:22,55:0.71:77
chr15	59497708	rs140060017	G	GAATTTCATTGAACAAAATGT	4881.73	.	AC=1;AF=0.500;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	0/1:92,126:0.58:218
chr15	59499120	rs76593785	C	T	2351.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:33,96:0.74:129
chr15	59499472	rs61741295	G	A	4848.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:113,204:0.64:317
chr15	59500117	rs61753957	T	C	3442.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:77,147:0.66:224
chr15	59500255	rs61740133	C	T	3958.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:117,190:0.62:307
chr15	59500346	rs76501863	C	T	720.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:28,33:0.54:61
chr15	59500842	rs80027646	T	C	5151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.854;ClippingRankSum=0.000;DB;DP=347;ExcessHet=3.0103;FS=2.571;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.47;ReadPosRankSum=-2.287;SOR=0.848;set=HC	GT:AD:AF:DP	0/1:116,217:0.65:333
chr15	59515434	rs2306779	C	T	3334.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr15	59515514	rs10711975	GA	G	123.25	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.520;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.70;ReadPosRankSum=-0.269;SOR=1.473;set=HC	GT:AD:AF:DP	0/1:3,13:0.81:16
chr15	59524043	rs2306783	G	A	325.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:46,19:0.29:65
chr15	59524056	rs7165587	T	C	1434.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr15	59528994	rs11356613	AT	A	374.73	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:16,26:0.62:42
chr15	59548475	rs4508371	C	T	21509.77	.	AC=2;AF=1.00;AN=2;DB;DP=823;set=Intersection	GT:AD:AF:DP	1/1:0,813:1.00:813
chr15	59664607	rs7175010	C	A	358.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr15	59750930	rs11071448	G	A	6177.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr15	59750960	rs7359171	A	G	4462.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr15	59752053	rs3803445	G	A	1760.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr15	59784334	rs4291860	C	A	430.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr15	59784493	rs4296198	C	T	2410.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr15	59784648	rs4417505	A	G	2039.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr15	59799278	rs4278683	T	C	644.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr15	59911892	rs3743119	G	T	2000.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:1,63:0.98:64
chr15	59931429	rs2306354	G	C	349.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:21,18:0.46:39
chr15	59931556	rs8033208	G	C	451.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr15	59944203	rs11637071	A	G	74.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:8,4:0.33:12
chr15	59944300	rs4774340	T	C	317.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:43,19:0.31:62
chr15	59960261	rs6151568	T	C	1327.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:16,62:0.79:78
chr15	59960941	rs6151566	CCT	C	106.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:22,5:0.19:27
chr15	59960956	rs71425879	T	TAC	569.73	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:11,19:0.63:30
chr15	59960980	rs6151565	C	T	133.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:32,10:0.24:42
chr15	59961646	rs2307273	T	C	260.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:20,12:0.38:32
chr15	59963272	rs56337803	C	CA	80.73	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:11,8:0.42:19
chr15	59963488	rs1135148	A	G	1103.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:33,51:0.61:84
chr15	59964798	rs4774342	C	G	2573.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr15	59964987	rs6151535	G	A	2110.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:70,95:0.58:165
chr15	59970298	rs2307272	C	A	3347.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:57,130:0.70:187
chr15	59972372	rs6151510	A	C	435.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:40,22:0.35:62
chr15	59974566	rs2307275	C	G	2793.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:62,116:0.65:178
chr15	59974777	rs6151483	A	G	1812.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:35,73:0.68:108
chr15	59981242	rs2306358	C	T	1045.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.578;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=5.141;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.51;ReadPosRankSum=0.513;SOR=1.781;set=HC	GT:AD:AF:DP	0/1:15,26:0.63:41
chr15	59981245	rs117437201	G	A	1045.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.688;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=3.099;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.90;ReadPosRankSum=-0.374;SOR=1.457;set=HC	GT:AD:AF:DP	0/1:14,28:0.67:42
chr15	59981515	rs3087328	A	G	2647.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:88,122:0.58:210
chr15	59981590	rs754641	G	A	1914.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:65,86:0.57:151
chr15	59981719	rs754642	C	T	748.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:8,31:0.79:39
chr15	60297110	rs75582291	G	A	1775.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:43,76:0.64:119
chr15	60298165	rs72739945	C	T	1357.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:126,73:0.37:199
chr15	60643302	rs3743269	T	C	2807.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr15	60649579	rs5813020	TC	T	4338.73	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr15	60656827	rs12898870	T	G	3205.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:1,120:0.99:121
chr15	60678298	rs11855679	T	A	4893.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr15	60678328	rs11858864	C	T	5510.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.24;SOR=0.732;set=HC	GT:AD:AF:DP	1/1:0,210:1.00:210
chr15	60678350	rs7182242	T	C	5174.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr15	60685141	rs60755565	TAA	T	826.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.275;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.90;ReadPosRankSum=2.009;SOR=0.425;set=HC	GT:AD:AF:DP	1/1:15,37:0.71:52
chr15	60685176	rs11631777	G	A	1655.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:37,77:0.68:114
chr15	60689877	.	A	G	223	.	AC=1;AF=0.500;AN=2;BRF=0.53;FR=0.5000;HP=2;HapScore=2;MGOF=20;MMLQ=28;MQ=59.59;NF=10;NR=4;PP=223;QD=18.4122294677;SC=AGGGCTTCTTAGAGAAGCCCG;SbPval=0.61;Source=Platypus;TC=51;TCF=36;TCR=15;TR=14;WE=60689885;WS=60689867;set=Platypus	GT:AD:AF:DP	0/1:37,14:0.27:51
chr15	60689927	rs12904756	G	C	2854.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr15	60689995	rs12904906	G	T	1800.77	.	AC=1;AF=0.500;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	0/1:255,111:0.30:366
chr15	60690089	rs12904657	A	G	2240.77	.	AC=1;AF=0.500;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	0/1:246,129:0.34:375
chr15	60724118	rs12437617	C	G	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.629;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=1.582;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.02;ReadPosRankSum=-1.187;SOR=0.856;set=HC	GT:AD:AF:DP	0/1:32,7:0.18:39
chr15	60724317	rs60675189	T	TA	403.73	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr15	60728246	rs34160342	T	C	38.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.284;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.17;ReadPosRankSum=1.639;SOR=0.869;set=HC	GT:AD:AF:DP	0/1:27,6:0.18:33
chr15	60728475	.	G	GA	73.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.711;ClippingRankSum=0.000;DP=58;ExcessHet=3.0103;FS=3.008;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.37;ReadPosRankSum=-0.500;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:42,12:0.22:54
chr15	60740915	rs1901993	C	T	679.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr15	60748785	rs10162692	C	T	126.94	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.39;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr15	60748785	.	CAC	TAT	43	.	AC=1;AF=0.500;AN=2;BRF=0.62;FR=0.5001;HP=2;HapScore=2;MGOF=92;MMLQ=28;MQ=58.15;NF=1;NR=2;PP=43;QD=32.1559582874;SC=TATATATATACACACACACAC;SbPval=0.5;Source=Platypus;TC=4;TCF=2;TCR=2;TR=3;WE=60748795;WS=60748781;set=Platypus	GT:AD:AF:DP	0/1:1,3:0.75:4
chr15	60748787	rs201397507	C	T	126.94	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.39;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr15	60759011	rs12907068	A	G	112.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:17,7:0.29:24
chr15	60768469	rs3759910	C	T	203.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:7,9:0.56:16
chr15	60771289	rs3743267	A	G	6689.77	.	AC=1;AF=0.500;AN=2;DB;DP=960;set=Intersection	GT:AD:AF:DP	0/1:599,350:0.37:949
chr15	60771438	rs11389291	G	GC	815.73	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:57,30:0.34:87
chr15	60789798	rs11071539	G	T	7295.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr15	60791954	rs2290430	A	C	853.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:27,40:0.60:67
chr15	60795175	rs17270167	G	C	538.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:80,32:0.29:112
chr15	60824108	rs10851682	T	C	5493.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr15	61521567	rs73436629	A	G	1093.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr15	61521579	rs77362668	A	G	1080.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.23;SOR=1.358;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr15	61521579	.	AAA	GAG	401	.	AC=2;AF=1.00;AN=2;BRF=0.48;FR=1.0000;HP=4;HapScore=3;MGOF=52;MMLQ=29;MQ=60.0;NF=7;NR=11;PP=401;QD=25.2482152701;SC=GCAGGAGGGAAAAAGCAGGCG;SbPval=0.52;Source=Platypus;TC=19;TCF=7;TCR=12;TR=18;WE=61521589;WS=61521557;set=Platypus	GT:AD:AF:DP	1/1:1,18:0.95:19
chr15	61521581	rs117108602	A	G	1080.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.23;SOR=1.358;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr15	62146969	rs2241491	T	A	1906.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr15	62147207	rs2241492	T	A	2676.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr15	62148730	rs3833021	TA	T	1314.73	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:3,66:0.96:69
chr15	62160758	rs7163441	C	A	1498.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr15	62167017	rs6494299	G	A	2522.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr15	62167897	rs12708469	G	A	1246.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr15	62169072	rs11071634	A	G	452.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr15	62172985	rs3809517	G	A	2426.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr15	62175019	rs12912348	T	C	1329.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr15	62176500	rs370230514	C	G	1466.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:43,70:0.62:113
chr15	62199342	rs28413840	T	A	1911.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr15	62201333	rs35201581	GA	G	4280.73	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:8,223:0.97:231
chr15	62202290	rs34965045	C	T	1948.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr15	62202482	rs10851704	C	T	11850.77	.	AC=2;AF=1.00;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	1/1:1,446:1.00:447
chr15	62210274	rs11071639	G	T	1405.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr15	62223273	rs9788670	C	T	6388.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr15	62232796	rs7172838	C	T	1772.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr15	62246554	rs17238266	T	C	1150.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:26,51:0.66:77
chr15	62265019	rs3833020	A	AT	366.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr15	62265507	rs11071645	G	A	928.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr15	62284087	rs201011173	C	CT	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.076;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=2.479;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.67;ReadPosRankSum=0.731;SOR=1.392;set=HC	GT:AD:AF:DP	0/1:62,15:0.19:77
chr15	62284101	rs8032433	A	G	2862.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr15	62304420	rs140372940	GACACAC	G,GAC	1583.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=72;set=Intersection	GT:AF:DP	1/2:0.30,0.70:43
chr15	62312840	rs4143844	A	C	967.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:71,45:0.39:116
chr15	62325518	rs12917535	A	T	79.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr15	62327127	rs2414758	T	C	3815.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr15	62352374	rs11639147	A	G	2103.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr15	62456358	rs8040712	A	C	3584.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr15	62534764	rs2414766	A	T	2156.94	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.747;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=5.352;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=17.39;ReadPosRankSum=0.600;SOR=1.480;set=HC	GT:AD:AF:DP	1/1:18,106:0.85:124
chr15	62535030	rs1996469	G	A	2265.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:1,82:0.99:83
chr15	62539151	rs7402021	T	C	8938.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr15	62539153	rs59880159	T	TGG	9520.73	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr15	62539162	rs2955803	A	C	10124.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr15	62539185	rs2945418	T	C	9905.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:0,365:1.00:365
chr15	62539781	rs2611797	A	G	3666.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr15	62936554	.	T	G	796.77	.	AC=1;AF=0.500;AN=2;DP=81;set=Intersection	GT:AD:AF:DP	0/1:46,34:0.42:80
chr15	62936830	rs11852582	C	T	2741.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr15	62939440	rs938979	T	C	1456.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr15	62944134	rs4329866	A	G	542.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:24,23:0.49:47
chr15	62944448	rs10775179	G	C	329.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:15,14:0.48:29
chr15	62948429	rs2414792	A	G	607.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:15,24:0.62:39
chr15	62950154	rs74652258	G	C	1860.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:48,77:0.62:125
chr15	62967342	rs1878785	A	G	4658.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr15	62967395	rs1878784	C	T	6066.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr15	62967554	rs1878783	T	C	1925.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr15	62978821	rs112279831	T	A	1968.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:60,92:0.61:152
chr15	62979016	rs12917611	A	C	1402.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr15	62986468	rs28615381	G	C	1365.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:30,60:0.67:90
chr15	62989755	rs28647240	C	T	838.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:24,35:0.59:59
chr15	62989767	rs28459545	G	T	905.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.942;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=1.049;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.13;ReadPosRankSum=-0.475;SOR=0.471;set=HC	GT:AD:AF:DP	0/1:29,40:0.58:69
chr15	62989775	rs8034474	T	C	2866.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr15	62989848	rs28415011	C	G	3078.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:78,134:0.63:212
chr15	62990906	rs28663432	G	A	1191.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:22,52:0.70:74
chr15	62991210	rs9630428	C	T	369.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:15,18:0.55:33
chr15	62993525	rs75087561	A	T	523.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:12,24:0.67:36
chr15	63008755	rs78706616	A	G	933.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.789;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=3.515;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.34;ReadPosRankSum=-1.998;SOR=0.382;set=HC	GT:AD:AF:DP	0/1:26,44:0.63:70
chr15	63009733	rs938983	A	G	1464.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:95,70:0.42:165
chr15	63009804	rs1320191	C	T	2219.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:171,113:0.40:284
chr15	63014548	rs10775181	A	G	4423.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr15	63030398	rs12900862	T	C	6896.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr15	63040516	.	C	CA	145.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.267;ClippingRankSum=0.000;DP=68;ExcessHet=3.0103;FS=2.735;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.21;ReadPosRankSum=1.039;SOR=0.563;set=HC	GT:AD:AF:DP	0/1:45,21:0.32:66
chr15	63044379	rs7171264	A	G	3817.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr15	63044637	rs7176359	A	G	2043.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:50,84:0.63:134
chr15	63047778	rs8033767	C	T	3227.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:111,154:0.58:265
chr15	63047793	rs4775538	C	T	2190.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:177,119:0.40:296
chr15	63054439	rs2030040	C	G	1889.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:38,88:0.70:126
chr15	63055658	rs10152548	T	A	634.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr15	63063141	rs34815657	C	CT	687.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.083;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.98;ReadPosRankSum=-2.526;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:83,55:0.40:138
chr15	63075918	rs111436593	CTCTGTG	C	377.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.692;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=1.027;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=0.841;QD=5.72;ReadPosRankSum=1.075;SOR=0.874;set=HC	GT:AD:AF:DP	0/1:43,23:0.35:66
chr15	63075920	rs202118499	CTGTGTG	C	345.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.115;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=1.070;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=-1.109;QD=4.80;ReadPosRankSum=-1.456;SOR=0.518;set=HC	GT:AD:AF:DP	0/1:48,24:0.33:72
chr15	63092992	rs144703742	CT	C	853.73	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:73,33:0.31:106
chr15	63340647	rs4374117	A	G	2617.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr15	63349096	rs4775613	G	A	6051.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr15	63351687	rs4775614	A	G	2483.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr15	63351840	rs1071646	C	A	3592.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:1,128:0.99:129
chr15	63353760	rs4774472	C	A	3147.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr15	63358032	.	C	CT	86.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.716;ClippingRankSum=0.000;DP=65;ExcessHet=3.0103;FS=1.161;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=2.577;QD=1.38;ReadPosRankSum=0.024;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:48,15:0.24:63
chr15	63363401	rs201620283	C	CATTTTGTTTT	4605.73	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr15	63413997	rs8182083	C	T	701.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.06;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr15	63414083	rs34317102	A	C	2815.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr15	63414723	rs189796619	TGG	CTC	3404.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr15	63433766	rs2729835	G	A	8900.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,323:1.00:323
chr15	63434110	rs8468	C	T	1309.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.29;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr15	63449543	rs7170846	A	C	10676.77	.	AC=2;AF=1.00;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	1/1:1,388:1.00:389
chr15	63449680	rs2292038	C	G	11578.77	.	AC=2;AF=1.00;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	1/1:0,418:1.00:418
chr15	63515946	rs11632192	A	G	690.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:2,28:0.93:30
chr15	63516266	rs17828874	G	C	2296.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr15	63554824	rs72363505	GTA	G	556.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr15	63570441	.	G	GA	371.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.254;ClippingRankSum=0.000;DP=108;ExcessHet=3.0103;FS=0.794;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.198;QD=3.75;ReadPosRankSum=-1.172;SOR=0.831;set=HC	GT:AD:AF:DP	0/1:60,39:0.39:99
chr15	63571279	rs35859954	G	GT	224.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.861;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.46;MQRankSum=1.568;QD=5.23;ReadPosRankSum=0.171;SOR=0.544;set=HC	GT:AD:AF:DP	0/1:23,20:0.47:43
chr15	63639016	rs2270764	A	G	1598.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr15	63668010	.	C	CT	149.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.385;ClippingRankSum=0.000;DP=68;ExcessHet=3.0103;FS=1.378;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.40;ReadPosRankSum=1.630;SOR=1.038;set=HC	GT:AD:AF:DP	0/1:29,15:0.34:44
chr15	63848805	rs3751043	C	G	2905.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr15	63921152	rs35700814	CT	C	160.19	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.97;MQRankSum=0.588;QD=10.68;ReadPosRankSum=0.824;SOR=0.610;set=HC	GT:AD:AF:DP	1/1:2,13:0.87:15
chr15	63922752	rs10851731	T	A	11252.77	.	AC=2;AF=1.00;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	1/1:0,416:1.00:416
chr15	63929599	rs71131175	GAT	G	2175.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr15	63932513	rs2228517	G	C	7487.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:2,263:0.99:265
chr15	63935149	rs10519223	A	G	10449.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	1/1:0,382:1.00:382
chr15	63935272	rs78341289	A	G	2712.77	.	AC=1;AF=0.500;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	0/1:238,146:0.38:384
chr15	63937209	rs2229749	C	G	14621.77	.	AC=2;AF=1.00;AN=2;DB;DP=554;set=Intersection	GT:AD:AF:DP	1/1:0,548:1.00:548
chr15	63953153	rs2272209	A	G	3885.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.61;SOR=1.110;set=HC	GT:AD:AF:DP	1/1:0,146:1.00:146
chr15	63954029	rs2228511	C	T	7757.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr15	63958762	rs1815130	T	C	997.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr15	63966513	rs72367123	C	CA	1241.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.819;ClippingRankSum=0.000;DB;DP=203;ExcessHet=3.0103;FS=4.123;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=0.960;QD=6.50;ReadPosRankSum=-1.223;SOR=1.099;set=HC	GT:AD:AF:DP	0/1:97,94:0.49:191
chr15	63970456	rs2228510	T	C	7515.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr15	63982018	rs11636604	T	C	216.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr15	63984772	rs11630720	T	C	6907.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr15	63988357	rs2255243	C	G	2979.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr15	63998914	rs34366173	CTT	C	922.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=22.51;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:7,34:0.83:41
chr15	64017798	rs11632718	A	G	1255.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr15	64020073	rs9920746	C	T	1329.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr15	64021476	rs61740450	T	G	1438.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:165,79:0.32:244
chr15	64039050	rs8034675	T	C	1293.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr15	64039879	rs11631436	G	A	3238.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:6,126:0.95:132
chr15	64048990	rs2271241	T	C	2070.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr15	64050300	rs12912999	G	A	1459.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr15	64056437	rs3764186	T	C	5946.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr15	64214954	rs920762	G	C	3177.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:2,119:0.98:121
chr15	64215375	rs4776669	G	C	10758.77	.	AC=2;AF=1.00;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	1/1:0,377:1.00:377
chr15	64263532	rs6494457	C	A	5636.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr15	64263784	rs7180050	G	A	2775.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr15	64263795	rs7180057	G	A	2327.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr15	64275645	rs55986634	G	A	2831.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr15	64283625	rs7168753	T	C	1408.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr15	64365340	rs4622459	C	T	2633.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;MQ=59.97;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr15	64367775	rs332234	T	C	1099.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr15	64385851	rs332259	T	C	4245.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr15	64404958	rs376284102	CA	C	128.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.087;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=3.706;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.01;ReadPosRankSum=-0.287;SOR=1.170;set=HC	GT:AD:AF:DP	0/1:98,30:0.23:128
chr15	64407762	rs5813279	CT	C	163.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=4.301;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.63;ReadPosRankSum=0.682;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:2,15:0.88:17
chr15	64410484	rs2290117	G	T	1636.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:1,58:0.98:59
chr15	64418221	rs2290119	C	G	2190.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr15	64418397	rs1130603	G	A	6352.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr15	64418483	rs2290121	C	T	3113.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:2,115:0.98:117
chr15	64428657	rs2290122	G	A	5721.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr15	64445681	rs34975001	GC	G	4676.73	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr15	64448365	rs2253557	C	T	2280.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr15	64448460	rs41434449	A	T	107.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:6,5:0.45:11
chr15	64458281	rs143314613	TA	T	101.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.227;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=3.744;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.08;ReadPosRankSum=1.065;SOR=0.204;set=HC	GT:AD:AF:DP	0/1:21,12:0.36:33
chr15	64675313	rs11635527	C	T	657.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr15	64679594	rs112815338	A	T	4814.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.434;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=27.20;ReadPosRankSum=2.836;SOR=0.747;set=HC	GT:AD:AF:DP	1/1:4,173:0.98:177
chr15	64693149	rs11380356	G	GT	1521.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.173;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.56;MQRankSum=0.296;QD=22.05;ReadPosRankSum=-0.977;SOR=1.949;set=HC	GT:AD:AF:DP	1/1:2,67:0.97:69
chr15	64706259	rs2046356	G	A	5140.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr15	64710827	rs4776494	T	C	241.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:61,18:0.23:79
chr15	64737103	rs7167394	G	C	308.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr15	64737225	rs7167612	G	A	1517.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr15	64742670	rs7172012	T	A	1159.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr15	64915106	rs525878	C	T	10767.77	.	AC=2;AF=1.00;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	1/1:0,398:1.00:398
chr15	64962630	rs11633399	A	C	6547.77	.	AC=1;AF=0.500;AN=2;DB;DP=442;set=Intersection	GT:AD:AF:DP	0/1:144,294:0.67:438
chr15	64972760	rs147044397	T	TTG	252.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.551;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=1.641;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.02;ReadPosRankSum=-3.101;SOR=0.317;set=HC	GT:AD:AF:DP	0/1:28,14:0.33:42
chr15	64973611	rs11631564	G	A	1282.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:54,60:0.53:114
chr15	65033311	rs6494489	C	T	609.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:75,36:0.32:111
chr15	65040928	rs12911708	C	T	2398.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr15	65041622	rs6494493	C	A	7755.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr15	65054533	rs72744744	C	T	653.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.383;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=0.786;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.88;ReadPosRankSum=1.323;SOR=0.558;set=HC	GT:AD:AF:DP	0/1:98,36:0.27:134
chr15	65054562	rs57945504	T	TG	7658.73	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr15	65054571	rs71133474	A	AG	8170.73	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr15	65107804	rs74935506	G	T	2659.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.091;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.47;ReadPosRankSum=0.089;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:33,111:0.77:144
chr15	65108504	rs17802279	A	T	1813.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:52,85:0.62:137
chr15	65108652	rs6494498	T	C	4033.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:98,180:0.65:278
chr15	65108707	rs7180207	G	C	2913.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:55,114:0.67:169
chr15	65110034	rs5024311	G	T	5037.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.832;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.53;ReadPosRankSum=-0.442;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:59,124:0.68:183
chr15	65110039	rs5024312	C	T	5069.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.009;ClippingRankSum=0.000;DB;DP=200;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.73;ReadPosRankSum=0.396;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:67,130:0.66:197
chr15	65110362	rs56057073	G	C	2882.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:52,113:0.68:165
chr15	65110391	rs55945924	C	T	3836.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:70,156:0.69:226
chr15	65113493	rs1872592	G	A	3583.77	.	AC=1;AF=0.500;AN=2;DB;DP=613;set=Intersection	GT:AD:AF:DP	0/1:401,198:0.33:599
chr15	65113764	rs56305637	CTTTT	C,CTT	1673.73	.	AC=1,1;AF=0.500,0.500;AN=2;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.13;MQRankSum=0.108;QD=25.75;SOR=2.170;set=HC	GT:AD:AF:DP	1/2:1,42,22:0.65,0.34:65
chr15	65114363	rs55736601	G	A	1622.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:23,70:0.75:93
chr15	65116328	rs12899195	A	G	2070.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr15	65116595	rs55675018	G	A	1725.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:40,75:0.65:115
chr15	65140715	rs35048171	C	G	2136.77	.	AC=1;AF=0.500;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	0/1:268,127:0.32:395
chr15	65140760	rs191362052	C	A	2663.77	.	AC=1;AF=0.500;AN=2;DB;DP=561;set=Intersection	GT:AD:AF:DP	0/1:388,165:0.30:553
chr15	65204285	rs11071820	G	T	595.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:64,37:0.37:101
chr15	65208022	rs201080527	G	A	2026.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:47,90:0.66:137
chr15	65208227	rs1471834	G	A	3342.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr15	65209718	rs34503100	G	GTGTC	1675.73	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:100,48:0.32:148
chr15	65209818	rs2056496	A	G	630.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:44,34:0.44:78
chr15	65209880	rs2056497	A	C	636.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr15	65222875	rs7168400	T	C	961.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:33,43:0.57:76
chr15	65234869	rs78415947	CT	C	388.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.134;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=5.338;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=2.080;QD=2.72;ReadPosRankSum=-1.119;SOR=1.267;set=HC	GT:AD:AF:DP	0/1:90,53:0.37:143
chr15	65268979	rs4776255	C	G	828.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr15	65273399	rs4776659	T	C	1527.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr15	65298672	rs4776660	G	A	964.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr15	65312614	rs60772880	C	CA	184.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.795;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=1.946;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.000;QD=1.61;ReadPosRankSum=0.419;SOR=0.450;set=HC	GT:AD:AF:DP	0/1:88,27:0.23:115
chr15	65315961	rs4776661	T	C	3881.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:2,142:0.99:144
chr15	65344035	rs2946676	G	A	2521.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr15	65347405	rs2232762	G	A	4895.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr15	65357491	rs2232753	G	A	2565.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr15	65369395	rs2919358	C	T	7321.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:2,270:0.99:272
chr15	65369531	rs2946642	G	T	8046.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr15	65369951	rs2919359	A	G	11242.77	.	AC=2;AF=1.00;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	1/1:0,414:1.00:414
chr15	65370034	.	C	T	4046.77	.	AC=1;AF=0.500;AN=2;DP=279;set=Intersection	GT:AD:AF:DP	0/1:99,178:0.64:277
chr15	65370353	rs2919360	T	C	15033.77	.	AC=2;AF=1.00;AN=2;DB;DP=575;set=Intersection	GT:AD:AF:DP	1/1:0,559:1.00:559
chr15	65370652	rs12901617	T	C	394.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:40,20:0.33:60
chr15	65449169	rs2946670	C	T	15300.77	.	AC=2;AF=1.00;AN=2;DB;DP=577;set=Intersection	GT:AD:AF:DP	1/1:0,570:1.00:570
chr15	65477364	.	AC	A	210.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.623;ClippingRankSum=0.000;DP=448;ExcessHet=3.0103;FS=6.057;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.51;ReadPosRankSum=1.632;SOR=1.153;set=HC	GT:AD:AF:DP	0/1:357,55:0.13:412
chr15	65477368	rs76636977	C	T	945.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.298;ClippingRankSum=0.000;DB;DP=448;ExcessHet=3.0103;FS=28.855;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.20;ReadPosRankSum=0.794;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:346,84:0.20:430
chr15	65489128	rs938952	C	T	5126.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr15	65489688	rs2679117	T	C	26988.77	.	AC=2;AF=1.00;AN=2;DB;DP=1023;set=Intersection	GT:AD:AF:DP	1/1:0,1017:1.00:1017
chr15	65490901	rs2679118	T	C	13286.77	.	AC=2;AF=1.00;AN=2;DB;DP=472;set=Intersection	GT:AD:AF:DP	1/1:0,467:1.00:467
chr15	65494212	rs2073711	A	G	913.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr15	65495820	rs2072048	A	G	2749.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.35;SOR=1.143;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr15	65495827	rs2073707	A	G	2716.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.54;SOR=1.107;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr15	65496475	rs2585035	T	G	1895.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr15	65496587	rs2585034	C	T	8255.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:1,300:1.00:301
chr15	65497849	rs2681038	A	G	3288.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr15	65497891	rs68021609	G	T	1756.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr15	65540685	rs80035906	G	A	877.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:17,34:0.67:51
chr15	65553246	rs2304896	C	T	928.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:114,55:0.33:169
chr15	65621138	rs11853777	G	A	2655.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:60,116:0.66:176
chr15	65621441	rs12907128	C	A	3311.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:85,149:0.64:234
chr15	65621857	rs509652	T	C	5276.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr15	65623124	rs3058049	C	CTCTA	2710.73	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:23,68:0.75:91
chr15	65623166	rs11634591	G	T	232.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:38,13:0.25:51
chr15	65624228	rs686739	G	C	18463.77	.	AC=2;AF=1.00;AN=2;DB;DP=696;set=Intersection	GT:AD:AF:DP	1/1:0,695:1.00:695
chr15	65667724	rs666623	A	G	1762.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr15	65669905	rs28550877	G	A	262.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:35,16:0.31:51
chr15	65676617	rs2292933	T	C	2403.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.530;ClippingRankSum=0.000;DB;DP=477;ExcessHet=3.0103;FS=1.209;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.10;ReadPosRankSum=-0.290;SOR=0.847;set=HC	GT:AD:AF:DP	0/1:326,145:0.31:471
chr15	65676726	rs33918653	C	T	1614.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:214,90:0.30:304
chr15	65678141	rs7183130	A	T	354.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:22,20:0.48:42
chr15	65681801	rs11071841	G	A	5960.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr15	65685968	rs11638647	G	A	1035.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr15	65688558	rs35517676	C	CT	2784.73	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr15	65688791	rs66699194	T	G	4722.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr15	65688824	rs1550028	C	G	2506.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr15	65693397	rs667436	T	C	2816.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr15	65703625	rs34355056	C	G	1545.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:114,75:0.40:189
chr15	65739303	rs11009	C	A	3630.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:118,168:0.59:286
chr15	65739371	rs71817756	C	CA	903.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.506;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=4.376;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=0.881;QD=8.61;ReadPosRankSum=-1.224;SOR=1.287;set=HC	GT:AD:AF:DP	0/1:43,62:0.59:105
chr15	65744238	rs149618856	A	AAGT	1296.73	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:17,32:0.65:49
chr15	65744267	.	T	TA	62.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.194;ClippingRankSum=0.000;DP=89;ExcessHet=3.0103;FS=18.179;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=0.000;QD=0.85;ReadPosRankSum=-0.173;SOR=2.552;set=HC	GT:AD:AF:DP	0/1:55,19:0.26:74
chr15	65746474	rs370866269	CA	C	53.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.998;ClippingRankSum=-0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.60;MQRankSum=0.549;QD=3.16;ReadPosRankSum=0.395;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:8,9:0.53:17
chr15	65759620	rs77365136	C	T	1281.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:24,52:0.68:76
chr15	65766399	rs8043478	C	T	338.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:16,15:0.48:31
chr15	65766421	rs352466	C	T	463.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:24,20:0.45:44
chr15	65766680	rs140751043	G	T	1181.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:23,51:0.69:74
chr15	65771121	rs72739494	T	C	808.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:82,43:0.34:125
chr15	65772698	rs352461	T	C	2960.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:78,135:0.63:213
chr15	65777290	rs74758930	A	G	510.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:8,22:0.73:30
chr15	65782451	rs60062953	A	AT	872.73	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:55,29:0.35:84
chr15	65804213	rs352478	C	T	202.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:17,10:0.37:27
chr15	65804537	rs352477	A	T	254.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:21,12:0.36:33
chr15	65822823	rs422390	C	G	538.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:55,25:0.31:80
chr15	65847112	.	C	CA	55.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.166;ClippingRankSum=0.000;DP=81;ExcessHet=3.0103;FS=1.455;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.71;ReadPosRankSum=0.234;SOR=0.990;set=HC	GT:AD:AF:DP	0/1:62,16:0.21:78
chr15	65856653	rs11539008	G	A	10475.77	.	AC=2;AF=1.00;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	1/1:0,392:1.00:392
chr15	65863917	rs2279854	A	C	2934.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:89,132:0.60:221
chr15	65864411	rs77854980	G	C	252.53	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:1,10:0.91:11
chr15	65871698	rs11484	G	T	2373.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:51,102:0.67:153
chr15	65888223	rs79757744	A	G	1225.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:22,49:0.69:71
chr15	65899420	rs16948873	A	G	714.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:17,27:0.61:44
chr15	65902922	rs6494529	G	A	3491.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr15	65903398	rs4366668	G	A	35452.77	.	AC=2;AF=1.00;AN=2;DB;DP=941;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.00;SOR=0.827;set=HC	GT:AD:AF:DP	1/1:0,933:1.00:933
chr15	65903398	.	GCG	ACA,ACG	2944	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.55;FR=0.5000,0.5000;HP=1;HapScore=1;MGOF=5;MMLQ=14;MQ=60.0;NF=185,295;NR=157,245;PP=2944,2682;QD=20;SC=CCAACAAGCAGCGAAAGGCAG;SbPval=0.53;Source=Platypus;TC=547;TCF=298;TCR=249;TR=342,540;WE=65903408;WS=65903388;set=Platypus	GT:AF:DP	0/1:0.63:547
chr15	65903400	rs77989486	G	A	13241.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.256;ClippingRankSum=0.000;DB;DP=955;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.01;ReadPosRankSum=-0.471;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:339,606:0.64:945
chr15	65917355	rs35571449	T	G	5212.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:116,211:0.65:327
chr15	65931908	rs111310111	A	ACTGAGGC	8712.73	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr15	65935195	rs12101597	C	G	1077.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr15	65936883	rs62014370	C	T	1041.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:17,44:0.72:61
chr15	65944191	rs62014378	T	C	4215.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:122,184:0.60:306
chr15	65944337	rs77073542	A	C	461.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:17,21:0.55:38
chr15	65947149	rs62014379	T	G	512.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:21,24:0.53:45
chr15	65959645	rs113627784	C	T	143.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:15,9:0.38:24
chr15	65960195	rs6494531	A	G	1496.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr15	66007972	rs28687655	A	T	756.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:14,34:0.71:48
chr15	66023700	rs62014398	C	T	5940.77	.	AC=1;AF=0.500;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	0/1:137,272:0.67:409
chr15	66023799	rs28556680	G	T	9208.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:0,350:1.00:350
chr15	66025010	rs11071849	G	A	372.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr15	66025275	rs1435126	C	T	304.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.836;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=1.007;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.62;ReadPosRankSum=0.808;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:46,20:0.30:66
chr15	66030364	rs60590903	T	C	1186.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:20,52:0.72:72
chr15	66031024	rs10519304	A	G	1005.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:26,47:0.64:73
chr15	66044604	rs8033741	A	T	2866.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr15	66257236	rs36088570	C	CA	438.73	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:24,16:0.40:40
chr15	66257408	rs333550	T	C	3834.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr15	66274690	rs551474	T	C	3505.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr15	66386853	rs7168565	G	A	4575.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr15	66587581	rs80126717	G	A	733.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.002;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.50;ReadPosRankSum=-1.561;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:120,43:0.26:163
chr15	66606227	rs180968638	A	G	58.80	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.70;ReadPosRankSum=-0.674;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr15	66612965	rs17851970	T	C	1874.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:194,104:0.35:298
chr15	66624166	rs28723485	G	T	1808.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:69,81:0.54:150
chr15	66625161	rs11071885	A	G	3345.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:88,160:0.65:248
chr15	66644521	rs9806123	C	G	3668.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr15	66644563	rs9806130	G	A	2078.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:37,94:0.72:131
chr15	66679601	rs112542693	G	C	411.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:45,21:0.32:66
chr15	66727689	.	A	ATTT	1093.73	.	AC=2;AF=1.00;AN=2;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=24.86;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:8,36:0.82:44
chr15	66735551	rs6494573	C	T	2064.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr15	66745890	rs7169326	G	A	3260.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr15	66745929	rs7169463	G	C	1123.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:56,55:0.50:111
chr15	66779698	rs41315964	C	T	5022.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;MQ=59.99;set=Intersection	GT:AD:AF:DP	0/1:105,216:0.67:321
chr15	66782048	rs41306345	C	T	4251.77	.	AC=1;AF=0.500;AN=2;DB;DP=343;MQ=59.99;set=Intersection	GT:AD:AF:DP	0/1:139,192:0.58:331
chr15	66792087	rs112095287	C	T	710.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:41,36:0.47:77
chr15	66792113	rs111385971	G	A	767.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:26,33:0.56:59
chr15	66793480	rs11071895	C	T	2254.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:2,76:0.97:78
chr15	66794352	rs74956204	G	A	486.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.749;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=2.746;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.27;ReadPosRankSum=-0.481;SOR=1.014;set=HC	GT:AD:AF:DP	0/1:83,31:0.27:114
chr15	66795980	rs8043062	A	G	2601.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr15	66806308	rs4238406	C	T	3269.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr15	66806517	rs4420479	G	A	840.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr15	66816183	rs6494579	C	G	266.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr15	66820455	rs8033122	T	A	149.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:10,7:0.41:17
chr15	66821174	rs6494580	G	C	7565.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr15	66821250	rs11071896	A	G	1653.77	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:236,101:0.30:337
chr15	66825594	rs12592213	G	A	212.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:2,10:0.83:12
chr15	66829396	rs12439324	T	G	142.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr15	66832466	rs75532475	A	G	3257.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:71,149:0.68:220
chr15	66840985	rs11858742	A	C	2690.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:69,116:0.63:185
chr15	66853414	rs7179073	G	A	1807.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:217,108:0.33:325
chr15	66857424	.	CA	C	299.73	.	AC=1;AF=0.500;AN=2;DP=34;set=Intersection	GT:AD:AF:DP	0/1:11,21:0.66:32
chr15	66857791	rs34436793	G	A	356.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:12,16:0.57:28
chr15	66874670	rs8041988	C	T	4143.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr15	66956824	rs7178388	A	T	795.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.87;SOR=0.957;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr15	66976149	rs2414910	G	T	188.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:2,8:0.80:10
chr15	66976158	.	C	T	89	.	AC=1;AF=0.500;AN=2;BRF=0.24;FR=0.5000;HP=2;HapScore=4;MGOF=4;MMLQ=28;MQ=60.0;NF=3;NR=1;PP=89;QD=30.9428031368;SC=AGCTCTGTCCCAGCCCCGTGT;SbPval=0.61;Source=Platypus;TC=14;TCF=11;TCR=3;TR=4;WE=66976166;WS=66976139;set=Platypus	GT:AD:AF:DP	1/0:10,4:0.29:14
chr15	66976250	rs2439421	G	A	575.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:38,28:0.42:66
chr15	67003841	rs2245159	C	T	262.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:27,13:0.33:40
chr15	67008737	rs2278604	C	A	1656.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:190,97:0.34:287
chr15	67224274	rs4776331	A	G	45.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:15,4:0.21:19
chr15	67234251	rs266383	A	G	10581.77	.	AC=2;AF=1.00;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	1/1:0,394:1.00:394
chr15	67358478	rs1061427	G	A	246.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.884;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.94;ReadPosRankSum=1.124;SOR=0.896;set=HC	GT:AD:AF:DP	0/1:35,15:0.30:50
chr15	67391394	rs5813427	GT	G	4591.73	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr15	67391497	rs1866319	C	A	863.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr15	67430223	rs1866318	T	C	2011.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr15	67435075	rs745103	G	A	351.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:43,17:0.28:60
chr15	67457335	rs1065080	A	G	5212.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr15	67457485	rs2289261	G	C	7562.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr15	67501782	rs28693872	T	C	2170.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:181,118:0.39:299
chr15	67501977	rs28418884	C	T	111.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:14,6:0.30:20
chr15	67596815	rs10438290	T	G	1282.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:29,58:0.67:87
chr15	67692502	rs7495023	T	C	9561.77	.	AC=2;AF=1.00;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	1/1:0,360:1.00:360
chr15	67768151	rs3985641	G	C	3685.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr15	67782440	rs10574862	AGGAAAT	A	5270.73	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr15	67872983	rs7172298	T	C	774.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr15	67879418	rs28730805	G	A	851.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr15	67885058	rs28637534	T	C	264.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr15	67951228	rs5813451	GA	G	6559.73	.	AC=2;AF=1.00;AN=2;DB;DP=345;MQ=60.13;set=Intersection	GT:AD:AF:DP	1/1:1,302:1.00:303
chr15	67962763	rs35395156	A	G	1627.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr15	67984705	rs4343227	G	A	7431.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr15	67985720	rs66548496	TA	T	335.73	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:5,11:0.69:16
chr15	67985931	rs8034680	T	C	2174.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.29;SOR=0.947;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr15	68040761	rs28730808	T	C	921.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:25,38:0.60:63
chr15	68041070	rs8037011	A	G	1224.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr15	68121483	rs7183168	A	C	766.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:101,47:0.32:148
chr15	68124665	rs72751453	C	A	4128.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:113,180:0.61:293
chr15	68124853	rs12901293	G	C	810.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:47,36:0.43:83
chr15	68346549	rs11855475	T	C	2234.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr15	68349893	rs1489598	A	G	224.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:8,12:0.60:20
chr15	68445912	rs11633620	T	A	2120.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr15	68468695	rs12438361	T	C	530.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:46,25:0.35:71
chr15	68473808	rs75673552	G	A	826.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:23,30:0.57:53
chr15	68492028	rs11071986	G	A	4105.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:101,182:0.64:283
chr15	68510770	rs8025947	A	G	1373.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:35,55:0.61:90
chr15	68522090	rs144971454	GGCGGAGCGGA	G	114.73	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr15	68522105	.	A	AGCGGAGCGGAGGGAGGCGGG	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.876;ClippingRankSum=-0.000;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.48;ReadPosRankSum=0.812;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:9,3:0.25:12
chr15	68583175	rs6494729	T	C	11923.77	.	AC=2;AF=1.00;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	1/1:0,428:1.00:428
chr15	68603625	rs898591	C	T	4660.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr15	68605169	rs4777035	G	A	1658.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:41,75:0.65:116
chr15	68608187	rs34136572	T	A	652.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:14,24:0.63:38
chr15	68609833	rs1516871	T	C	1644.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr15	68612385	rs35808090	C	A	1681.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr15	68617749	rs5813482	TG	T	333.73	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:28,14:0.33:42
chr15	68618961	rs2271722	T	C	3908.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr15	68624175	rs7167822	C	T	2252.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr15	68624290	rs2292745	G	A	4274.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:113,198:0.64:311
chr15	68624396	rs7168069	A	C	5092.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr15	68624641	rs6494733	A	C	16656.77	.	AC=2;AF=1.00;AN=2;DB;DP=623;set=Intersection	GT:AD:AF:DP	1/1:0,617:1.00:617
chr15	68628143	rs2306023	C	T	9393.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:0,332:1.00:332
chr15	68631740	rs2125998	A	G	1859.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr15	68641362	rs61119953	AG	A	2434.73	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:2,89:0.98:91
chr15	68649587	rs12907890	G	A	8261.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;MQ=60.03;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr15	68656864	rs2306013	A	G	1007.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr15	68656960	rs2306012	A	G	3182.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr15	68695448	rs4777049	T	C	1009.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:84,50:0.37:134
chr15	68724262	rs2305078	G	C	2173.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr15	68987315	rs11072043	A	C	1240.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr15	68987341	rs7359311	A	G	1944.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr15	68987450	.	T	TTC	5613.73	.	AC=1;AF=0.500;AN=2;DP=353;set=Intersection	GT:AD:AF:DP	0/1:132,186:0.58:318
chr15	69003871	rs3736272	G	T	4437.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr15	69007656	rs1542746	T	G	13426.77	.	AC=2;AF=1.00;AN=2;DB;DP=497;set=Intersection	GT:AD:AF:DP	1/1:0,487:1.00:487
chr15	69011389	rs1491640	A	C	7823.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.02;SOR=1.754;set=HC	GT:AD:AF:DP	1/1:0,170:1.00:170
chr15	69011389	.	AGTGAC	CATGAT,CGTGAT	1273	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.35;FR=0.5000,0.5000;HP=2;HapScore=2;MGOF=2;MMLQ=28;MQ=60.0;NF=42,51;NR=12,28;PP=836,1273;QD=16.6568124974;SC=GAGCAGGTAGAGTGACTGGAG;SbPval=0.84;Source=Platypus;TC=141;TCF=100;TCR=41;TR=54,79;WE=69011402;WS=69011379;set=Platypus	GT:AF:DP	0/1:0.38:141
chr15	69011390	rs369704417	G	A	1542.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.937;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=13.365;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.92;ReadPosRankSum=0.570;SOR=1.591;set=HC	GT:AD:AF:DP	0/1:102,71:0.41:173
chr15	69011394	rs1491639	C	T	7935.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.36;SOR=1.716;set=HC	GT:AD:AF:DP	1/1:0,183:1.00:183
chr15	69094079	rs12904108	A	T	268.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.570;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.42;ReadPosRankSum=0.710;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:88,23:0.21:111
chr15	69094158	rs10689979	T	TCA	834.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.528;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=3.937;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.96;ReadPosRankSum=-0.144;SOR=1.056;set=HC	GT:AD:AF:DP	0/1:91,29:0.24:120
chr15	69112946	rs4777089	C	A	894.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr15	69112971	rs35802209	G	GCA	2983.74	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:12,103:0.90:115
chr15	69238445	rs3743093	G	A	6948.77	.	AC=1;AF=0.500;AN=2;DB;DP=470;set=Intersection	GT:AD:AF:DP	0/1:164,296:0.64:460
chr15	69325581	rs311893	C	T	8985.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:3,336:0.99:339
chr15	69327825	rs311889	C	T	9705.77	.	AC=2;AF=1.00;AN=2;DB;DP=374;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.52;SOR=0.922;set=HC	GT:AD:AF:DP	1/1:0,366:1.00:366
chr15	69328226	rs12907196	C	T	2848.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:109,133:0.55:242
chr15	69329623	rs34924807	G	A	627.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.802;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=1.490;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.27;ReadPosRankSum=-0.817;SOR=0.373;set=HC	GT:AD:AF:DP	0/1:19,25:0.57:44
chr15	69329623	.	GA	AG	356	.	AC=1;AF=0.500;AN=2;BRF=0.38;FR=0.5000;HP=1;HapScore=2;MGOF=0;MMLQ=28;MQ=60.0;NF=5;NR=15;PP=356;QD=20.4733937431;SC=GGAGCAGCTGGATACCCTGTC;SbPval=0.42;Source=Platypus;TC=38;TCF=8;TCR=30;TR=20;WE=69329632;WS=69329613;set=Platypus	GT:AD:AF:DP	1/0:18,20:0.53:38
chr15	69329624	rs2246273	A	G	1672.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.90;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr15	69347593	rs311905	G	A	2797.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr15	69349087	rs311906	T	C	1977.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr15	69561518	rs3865014	G	A	7874.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr15	69676892	.	A	G	932	.	AC=2;AF=1.00;AN=2;BRF=0.27;FR=1.0000;HP=1;HapScore=1;MGOF=19;MMLQ=24;MQ=55.84;NF=38;NR=7;PP=932;QD=21.4838047233;SC=CGTGTTCATCATGGAGGGTGA;SbPval=0.65;Source=Platypus;TC=46;TCF=38;TCR=8;TR=45;WE=69676912;WS=69676882;set=Platypus	GT:AD:AF:DP	1/1:1,45:0.98:46
chr15	69676904	.	C	T	1258	.	AC=2;AF=1.00;AN=2;BRF=0.27;FR=1.0000;HP=4;HapScore=1;MGOF=19;MMLQ=27;MQ=56.52;NF=48;NR=9;PP=1258;QD=22.6801967114;SC=GGAGGGTGAGCGGGCCCTCCG;SbPval=0.59;Source=Platypus;TC=60;TCF=50;TCR=10;TR=57;WE=69676912;WS=69676882;set=Platypus	GT:AD:AF:DP	1/1:3,57:0.95:60
chr15	69676944	.	T	C	2188	.	AC=2;AF=1.00;AN=2;BRF=0.33;FR=1.0000;HP=1;HapScore=1;MGOF=22;MMLQ=23;MQ=58.61;NF=81;NR=39;PP=2188;QD=18.5230934379;SC=GCGGGTCCTCTGTGTTCATGG;SbPval=0.58;Source=Platypus;TC=123;TCF=82;TCR=41;TR=120;WE=69676952;WS=69676934;set=Platypus	GT:AD:AF:DP	1/1:3,120:0.98:123
chr15	69683945	rs2242464	C	G	7174.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr15	69684376	rs7183388	G	A	2383.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr15	69684389	rs11634798	A	T	2616.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr15	69684477	rs58280155	T	A	2359.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr15	69684481	rs112633523	AT	A	1517.73	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:2,73:0.97:75
chr15	69684507	rs11634850	A	G	1684.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr15	69709686	rs3759825	G	A	4013.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr15	69715483	.	C	CT	49.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.430;ClippingRankSum=0.000;DP=22;ExcessHet=3.0103;FS=1.862;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.49;ReadPosRankSum=2.026;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:13,7:0.35:20
chr15	69715488	rs7180624	C	T	734.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.99;SOR=1.508;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr15	69728949	rs3825858	A	G	11289.77	.	AC=2;AF=1.00;AN=2;DB;DP=450;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.54;SOR=0.768;set=HC	GT:AD:AF:DP	1/1:0,442:1.00:442
chr15	69732483	rs4776448	G	A	5882.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr15	69732736	rs937724	C	T	6553.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr15	69740350	rs13613	A	G	2345.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr15	69747675	rs1463911	A	T	811.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr15	69754221	rs8041861	T	C	16079.77	.	AC=2;AF=1.00;AN=2;DB;DP=630;set=Intersection	GT:AD:AF:DP	1/1:0,624:1.00:624
chr15	70345626	rs1057865	C	T	5739.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:3,217:0.99:220
chr15	70346923	rs2228178	C	T	5091.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr15	70347362	rs4777227	C	A	3571.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr15	70347816	rs11440222	A	AG	888.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr15	70348523	rs2270871	G	C	1967.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr15	70349744	rs8036209	T	C	3912.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr15	70351649	rs7176098	C	A	793.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:61,38:0.38:99
chr15	70351788	rs2133977	T	C	2207.77	.	AC=1;AF=0.500;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	0/1:226,119:0.34:345
chr15	70368432	rs2291986	T	C	4749.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:123,208:0.63:331
chr15	70387560	rs12441129	A	C	1747.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr15	70388449	rs71149952	AG	A	5559.73	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr15	70958937	rs2241530	G	A	332.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr15	70960068	rs934005	G	A	14087.77	.	AC=2;AF=1.00;AN=2;DB;DP=534;set=Intersection	GT:AD:AF:DP	1/1:0,525:1.00:525
chr15	70963563	rs150654110	T	C	239.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:7,11:0.61:18
chr15	70971741	rs143519196	C	CTAAATAAA	636.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr15	70991925	rs4776525	G	C	27681.77	.	AC=2;AF=1.00;AN=2;DB;DP=1065;set=Intersection	GT:AD:AF:DP	1/1:0,1061:1.00:1061
chr15	71055601	rs116529282	T	C	136.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:17,7:0.29:24
chr15	71055860	rs4777306	T	G	608.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:46,33:0.42:79
chr15	71125093	rs3825970	G	A	8003.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:2,291:0.99:293
chr15	71125204	rs1549317	A	G	5309.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:1,191:0.99:192
chr15	71175296	rs1528828	A	G	2913.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr15	71186811	rs1881568	C	G	2763.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr15	71193188	rs3830648	A	AAT	230.73	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:10,8:0.44:18
chr15	71276480	rs3834543	GCAA	G	4749.73	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:66,120:0.65:186
chr15	71341050	rs1713569	G	A	1661.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:52,71:0.58:123
chr15	71535458	rs12440013	G	C	5770.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr15	72023422	rs2277540	C	T	2594.77	.	AC=1;AF=0.500;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	0/1:233,137:0.37:370
chr15	72037610	rs2291994	G	A	733.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:81,40:0.33:121
chr15	72040774	rs1872056	C	T	4757.77	.	AC=1;AF=0.500;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	0/1:128,218:0.63:346
chr15	72050163	rs2625533	C	G	3929.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr15	72073003	rs2291275	C	T	1819.77	.	AC=1;AF=0.500;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	0/1:244,107:0.30:351
chr15	72105928	rs11351249	AC	A	8648.73	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr15	72142619	rs2306578	T	C	480.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:16,20:0.56:36
chr15	72186286	rs2128112	A	T	708.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr15	72191073	rs2415128	T	C	13973.77	.	AC=2;AF=1.00;AN=2;DB;DP=521;set=Intersection	GT:AD:AF:DP	1/1:0,514:1.00:514
chr15	72191266	rs2415129	C	T	10686.77	.	AC=2;AF=1.00;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	1/1:0,388:1.00:388
chr15	72225961	rs2277543	A	G	311.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:16,17:0.52:33
chr15	72252189	rs5813671	T	TA	537.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.061;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=0.874;QD=7.37;ReadPosRankSum=0.190;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:35,38:0.52:73
chr15	72300031	rs3759820	A	C	307.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:17,13:0.43:30
chr15	72300045	rs3759821	T	C	508.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:15,20:0.57:35
chr15	72302894	rs2957742	G	C	411.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:20,18:0.47:38
chr15	72313442	rs12914208	A	T	1359.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:43,60:0.58:103
chr15	72431883	rs7175792	G	C	393.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:29,17:0.37:46
chr15	72432583	rs930871	A	G	6158.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr15	72454729	rs897731	C	G	5972.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr15	72457551	rs2959944	A	G	1007.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr15	72460339	rs8025939	T	A	635.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:51,32:0.39:83
chr15	72462165	rs11072348	A	C	3556.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:1,124:0.99:125
chr15	72462255	rs34815962	C	T	2570.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:70,119:0.63:189
chr15	72462831	rs7182776	T	C	978.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr15	72490170	rs12908008	C	G	1615.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.441;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=3.933;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.36;ReadPosRankSum=-2.197;SOR=0.318;set=HC	GT:AD:AF:DP	0/1:19,69:0.78:88
chr15	72511415	rs3759901	G	A	2088.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:42,86:0.67:128
chr15	72523340	rs890312	T	C	631.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:29,34:0.54:63
chr15	72543084	rs713048	G	A	429.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:4,18:0.82:22
chr15	72543656	rs2959904	T	C	1523.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr15	72545876	rs1426166	T	C	2528.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr15	72546693	rs34382909	C	A	2242.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:40,92:0.70:132
chr15	72546765	rs2912227	A	G	6035.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr15	72548765	rs12904652	T	C	1444.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:16,63:0.80:79
chr15	72556799	rs11072352	G	A	3549.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr15	72557955	rs1426170	T	C	548.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr15	72558098	rs1426169	G	T	765.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:15,31:0.67:46
chr15	72559237	rs36110969	G	A	818.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:17,35:0.67:52
chr15	72559265	rs36102511	G	GA	1024.73	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:10,26:0.72:36
chr15	72559269	rs35367912	T	G	1033.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:10,26:0.72:36
chr15	72559326	rs62022788	T	G	62.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:12,4:0.25:16
chr15	72608326	rs2912224	G	A	1859.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:53,82:0.61:135
chr15	72637599	rs10468051	C	T	473.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;MQ=59.48;set=Intersection	GT:AD:AF:DP	0/1:6,18:0.75:24
chr15	72637795	rs4777502	T	C	6457.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr15	72637960	rs2288259	C	T	965.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:14,38:0.73:52
chr15	72638892	rs1800431	T	C	2747.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr15	72640193	rs2303449	G	T	1348.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:26,58:0.69:84
chr15	72640226	rs2303450	T	A	938.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:17,38:0.69:55
chr15	72648053	.	T	TA	796.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.062;ClippingRankSum=0.000;DP=90;ExcessHet=3.0103;FS=1.042;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.07;ReadPosRankSum=-0.007;SOR=0.524;set=HC	GT:AD:AF:DP	0/1:21,51:0.71:72
chr15	72700069	rs35916586	G	A	2325.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:82,110:0.57:192
chr15	72859047	rs11403578	A	AT	407.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr15	72864578	rs5813687	AT	A	634.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.833;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=0.601;QD=11.33;ReadPosRankSum=-0.190;SOR=0.565;set=HC	GT:AD:AF:DP	1/1:8,48:0.86:56
chr15	72875521	.	G	GT	241.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.804;ClippingRankSum=0.000;DP=243;ExcessHet=3.0103;FS=0.676;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=3.102;QD=1.04;ReadPosRankSum=0.662;SOR=0.774;set=HC	GT:AD:AF:DP	0/1:183,50:0.21:233
chr15	72879653	rs139334001	A	ATTG	2436.73	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr15	72968748	.	G	GT	284.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.994;ClippingRankSum=0.000;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.16;ReadPosRankSum=0.995;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:60,30:0.33:90
chr15	72987588	rs4777527	G	T	2837.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr15	73002035	rs8033604	G	A	2364.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr15	73004739	rs33923961	G	A	740.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:24,31:0.56:55
chr15	73021855	rs6495015	T	C	277.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:60,18:0.23:78
chr15	73023937	rs12914333	T	C	12003.77	.	AC=2;AF=1.00;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	1/1:3,452:0.99:455
chr15	73024181	rs9806635	G	A	1831.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr15	73027478	rs2277598	T	C	687.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:57,36:0.39:93
chr15	73028367	rs28397892	C	G	758.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.352;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=3.080;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.24;ReadPosRankSum=0.148;SOR=1.308;set=HC	GT:AD:AF:DP	0/1:11,33:0.75:44
chr15	73028375	rs12324395	G	A	1348.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.67;SOR=1.819;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr15	73044575	rs9460	G	A	172.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:9,8:0.47:17
chr15	73048529	rs2304598	G	A	1386.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:35,55:0.61:90
chr15	73052840	rs8024644	T	C	5633.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.200;ClippingRankSum=0.000;DB;DP=250;ExcessHet=3.0103;FS=1.662;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.28;ReadPosRankSum=1.476;SOR=0.574;set=HC	GT:AD:AF:DP	0/1:99,143:0.59:242
chr15	73052845	rs8023358	A	G	5645.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.435;ClippingRankSum=0.000;DB;DP=239;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.23;ReadPosRankSum=-0.417;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:91,142:0.61:233
chr15	73067234	rs11634630	T	C	9340.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:0,358:1.00:358
chr15	73408756	rs143744012	CTA	C	126.73	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:13,5:0.28:18
chr15	73409213	rs3840037	A	AT	114.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.370;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=1.489;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.69;ReadPosRankSum=0.065;SOR=1.087;set=HC	GT:AD:AF:DP	0/1:51,17:0.25:68
chr15	73528937	rs747873	T	C	474.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:58,23:0.28:81
chr15	73541513	rs3736510	A	G	1964.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:202,109:0.35:311
chr15	73545732	rs2623989	T	C	2714.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr15	73551250	rs2251205	A	G	837.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:146,54:0.27:200
chr15	73564881	rs1131854	C	T	2532.77	.	AC=1;AF=0.500;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	0/1:243,133:0.35:376
chr15	73564989	rs12914819	A	C	1665.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:44,78:0.64:122
chr15	73566942	rs497539	G	A	11322.77	.	AC=2;AF=1.00;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	1/1:0,415:1.00:415
chr15	73567137	rs201909530	CT	C	269.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.952;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=2.650;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.701;QD=2.31;ReadPosRankSum=-0.114;SOR=1.234;set=HC	GT:AD:AF:DP	0/1:76,41:0.35:117
chr15	73581444	rs489531	A	G	2504.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:57,113:0.66:170
chr15	73590579	rs2292915	C	T	3278.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:62,135:0.69:197
chr15	73595089	rs3833036	T	TA	2586.73	.	AC=1;AF=0.500;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:210,97:0.32:307
chr15	73614834	rs529004	T	C	3199.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr15	73616635	rs481579	T	C	3727.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr15	73735744	rs73442046	C	T	478.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:41,24:0.37:65
chr15	73766072	.	A	G	29	.	AC=1;AF=0.500;AN=2;BRF=0.5;FR=0.5000;HP=4;HapScore=2;MGOF=10;MMLQ=26;MQ=60.0;NF=2;NR=1;PP=29;QD=21.2570708491;SC=GCTCGGAGTAAAAAGATCAAT;SbPval=0.33;Source=Platypus;TC=8;TCF=7;TCR=1;TR=3;WE=73766080;WS=73766062;set=Platypus	GT:AD:AF:DP	0/1:5,3:0.38:8
chr15	73848808	rs922687	A	C	2804.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr15	73852290	rs117740286	A	G	120.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:10,6:0.38:16
chr15	73852298	rs141729178	GA	G	153.73	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chr15	73855330	rs200404677	G	GA	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.232;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=6.990;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.58;ReadPosRankSum=-0.352;SOR=0.048;set=HC	GT:AD:AF:DP	0/1:8,7:0.47:15
chr15	73889752	rs200463196	G	GA	205.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.575;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=7.872;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=2.615;QD=1.92;ReadPosRankSum=1.589;SOR=2.242;set=HC	GT:AD:AF:DP	0/1:78,29:0.27:107
chr15	73982965	rs6495076	G	A	2127.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr15	74000839	rs2291011	G	A	3986.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.07;SOR=1.088;set=HC	GT:AD:AF:DP	1/1:0,159:1.00:159
chr15	74032179	rs71678977	AAT	A	188.92	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.140;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=4.771;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=20.99;ReadPosRankSum=-0.765;SOR=1.739;set=HC	GT:AD:AF:DP	1/1:1,8:0.89:9
chr15	74032234	rs11857595	C	T	1430.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr15	74033033	rs11858458	A	G	3389.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:1,121:0.99:122
chr15	74043523	rs7497362	A	G	5174.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr15	74173668	rs7496005	A	G	1022.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:138,63:0.31:201
chr15	74176453	rs66619071	GA	G	5689.73	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr15	74178605	rs2278864	G	T	236.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:48,14:0.23:62
chr15	74178966	rs62007098	G	A	2456.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:43,108:0.72:151
chr15	74179024	rs62007099	C	A	1155.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:31,51:0.62:82
chr15	74181255	rs7170803	A	G	1796.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr15	74219546	rs1048661	G	T	2849.77	.	AC=1;AF=0.500;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	0/1:193,142:0.42:335
chr15	74234082	rs11638944	C	G	547.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:10,22:0.69:32
chr15	74234171	rs8042181	A	G	1419.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr15	74239307	rs67182653	G	A	918.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:108,49:0.31:157
chr15	74241749	rs2304722	T	C	908.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:138,55:0.28:193
chr15	74243963	.	C	T	885.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.203;ClippingRankSum=0.000;DP=56;ExcessHet=3.0103;FS=2.863;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.40;ReadPosRankSum=0.504;SOR=1.339;set=HC	GT:AD:AF:DP	0/1:16,38:0.70:54
chr15	74244278	rs8818	C	G	1297.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr15	74277795	rs10851866	T	C	559.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:42,31:0.42:73
chr15	74284406	rs2304715	C	G	693.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.512;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=1.466;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.13;ReadPosRankSum=0.275;SOR=0.517;set=HC	GT:AD:AF:DP	0/1:125,43:0.26:168
chr15	74336633	rs5742915	T	C	11296.77	.	AC=2;AF=1.00;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	1/1:0,418:1.00:418
chr15	74421010	rs2279379	C	G	4549.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:95,203:0.68:298
chr15	74467856	rs1052622	G	A	3319.77	.	AC=1;AF=0.500;AN=2;DB;DP=565;set=Intersection	GT:AD:AF:DP	0/1:374,184:0.33:558
chr15	74472716	rs351242	G	A	1427.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:85,66:0.44:151
chr15	74473739	rs736118	C	T	3021.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:66,133:0.67:199
chr15	74476340	rs2277608	G	C	3044.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:85,138:0.62:223
chr15	74477216	rs351238	G	A	576.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:45,29:0.39:74
chr15	74477239	rs351237	G	A	674.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:70,32:0.31:102
chr15	74483415	rs351228	T	C	5368.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr15	74486444	rs974456	C	T	2146.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:54,88:0.62:142
chr15	74489883	rs351218	A	G	1363.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr15	74494652	rs76336272	G	A	3941.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.161;ClippingRankSum=0.000;DB;DP=393;ExcessHet=3.0103;FS=5.399;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.77;ReadPosRankSum=-0.369;SOR=0.967;set=HC	GT:AD:AF:DP	0/1:154,212:0.58:366
chr15	74494896	rs139500165	G	GCTCGT	1121.73	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:15,29:0.66:44
chr15	74500080	rs77704192	G	C	4323.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:103,184:0.64:287
chr15	74528985	rs351175	T	G	478.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:58,27:0.32:85
chr15	74536285	rs67845844	CA	C	685.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.231;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=3.342;MLEAC=1;MLEAF=0.500;MQ=59.63;MQRankSum=-0.262;QD=10.89;ReadPosRankSum=0.368;SOR=0.275;set=HC	GT:AD:AF:DP	0/1:10,53:0.84:63
chr15	74558927	rs440793	A	G	1991.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr15	74560566	rs1038436	C	T	1242.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:123,64:0.34:187
chr15	74560828	rs138360055	T	TG	458.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.263;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=14.599;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.91;ReadPosRankSum=1.097;SOR=2.737;set=HC	GT:AD:AF:DP	0/1:42,16:0.28:58
chr15	74560831	rs28460010	T	G	518.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.608;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=12.477;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.65;ReadPosRankSum=0.019;SOR=2.685;set=HC	GT:AD:AF:DP	0/1:42,18:0.30:60
chr15	74572242	rs351165	T	A	1844.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr15	74572917	rs351164	A	G	2989.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr15	74588024	rs1484212	T	C	328.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:48,18:0.27:66
chr15	74611182	rs751528	A	G	3099.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.89;SOR=2.712;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr15	74611189	rs751527	T	C	2977.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.27;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr15	74622365	rs2277601	C	T	261.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:6,11:0.65:17
chr15	74622457	rs2277602	A	C	853.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:17,38:0.69:55
chr15	74622533	rs2277603	A	G	1430.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:36,67:0.65:103
chr15	74622678	rs1564782	G	A	196.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:15,11:0.42:26
chr15	74623272	rs2277605	G	A	4083.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:81,183:0.69:264
chr15	74623302	rs2277606	T	C	4374.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.374;ClippingRankSum=0.000;DB;DP=303;ExcessHet=3.0103;FS=0.442;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.73;ReadPosRankSum=1.909;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:102,195:0.66:297
chr15	74625463	rs6495094	GG	CA	2152.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;JOINED;set=Intersection	GT:AD:AF:DP	0/1:39,55:0.59:94
chr15	74627222	rs2279356	G	T	1040.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:23,38:0.62:61
chr15	74628242	rs900802	C	T	4261.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:118,189:0.62:307
chr15	74628891	rs2959003	A	G	1158.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:36,49:0.58:85
chr15	74659535	rs12442401	A	G	523.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.945;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=17.187;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.35;ReadPosRankSum=1.820;SOR=0.027;set=HC	GT:AD:AF:DP	0/1:30,26:0.46:56
chr15	74659609	rs28681535	G	T	1480.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:157,85:0.35:242
chr15	74703929	rs741761	T	C	911.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:71,46:0.39:117
chr15	74709566	rs2075590	T	G	486.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:50,21:0.30:71
chr15	74710593	rs28362912	C	T	8440.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr15	74889853	rs145671041	TAC	T	116.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.792;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=1.164;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=2.053;QD=1.36;ReadPosRankSum=1.179;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:74,12:0.14:86
chr15	74889868	rs145997889	A	G	1228.73	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:31,63:0.67:94
chr15	74907946	rs139096840	A	G	179.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:31,12:0.28:43
chr15	74920220	rs116916068	G	A	1360.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:151,77:0.34:228
chr15	75041917	rs762551	C	A	448.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:14,18:0.56:32
chr15	75044238	rs2472304	G	A	2150.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:31,78:0.72:109
chr15	75047426	rs2470890	C	T	2778.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:28,115:0.80:143
chr15	75080872	rs2168519	T	C	225.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:9,10:0.53:19
chr15	75081078	rs2168518	G	A	1453.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:42,67:0.61:109
chr15	75114322	rs11636952	T	C	1097.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:31,51:0.62:82
chr15	75115895	rs7162232	G	A	2685.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:69,122:0.64:191
chr15	75117912	rs79217743	G	T	807.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:81,44:0.35:125
chr15	75129594	rs2290573	G	A	4194.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:73,186:0.72:259
chr15	75130015	rs11312224	AG	A	5294.73	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:115,204:0.64:319
chr15	75130093	rs12898397	T	C	5395.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.771;ClippingRankSum=0.000;DB;DP=391;ExcessHet=3.0103;FS=5.994;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.595;QD=13.80;ReadPosRankSum=1.820;SOR=0.964;set=HC	GT:AD:AF:DP	0/1:151,240:0.61:391
chr15	75130573	rs2290572	A	G	917.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:30,39:0.57:69
chr15	75131661	rs4886615	A	G	3865.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:80,164:0.67:244
chr15	75131959	rs936227	A	G	797.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:24,38:0.61:62
chr15	75132490	rs12908814	C	G	3115.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:89,136:0.60:225
chr15	75135447	rs2290574	T	C	2181.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.446;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=1.396;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.74;ReadPosRankSum=0.950;SOR=0.891;set=HC	GT:AD:AF:DP	0/1:49,99:0.67:148
chr15	75140854	rs3765066	G	A	428.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:8,18:0.69:26
chr15	75142761	rs2305668	T	G	998.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:78,53:0.40:131
chr15	75183935	rs11638130	G	A	1937.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:50,87:0.64:137
chr15	75185670	rs7495739	A	G	3931.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:97,183:0.65:280
chr15	75189930	rs1130741	A	G	4794.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:92,212:0.70:304
chr15	75230502	rs6495131	A	G	123.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr15	75309170	rs371189916	CT	C	354.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.748;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=1.070;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.81;ReadPosRankSum=-0.638;SOR=0.507;set=HC	GT:AD:AF:DP	0/1:47,46:0.49:93
chr15	75310075	rs12593566	C	A	3590.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr15	75311036	rs2289583	C	A	535.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:26,22:0.46:48
chr15	75336729	rs2304899	A	G	17453.77	.	AC=2;AF=1.00;AN=2;DB;DP=649;set=Intersection	GT:AD:AF:DP	1/1:0,647:1.00:647
chr15	75498548	rs1466663	A	G	11069.77	.	AC=2;AF=1.00;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	1/1:0,415:1.00:415
chr15	75499602	rs12591506	C	A	19109.77	.	AC=2;AF=1.00;AN=2;DB;DP=684;set=Intersection	GT:AD:AF:DP	1/1:0,680:1.00:680
chr15	75499619	rs11072531	T	C	16727.77	.	AC=2;AF=1.00;AN=2;DB;DP=635;set=Intersection	GT:AD:AF:DP	1/1:0,628:1.00:628
chr15	75499861	rs11072532	G	A	12680.77	.	AC=2;AF=1.00;AN=2;DB;DP=493;MQ=60.02;set=Intersection	GT:AD:AF:DP	1/1:1,479:1.00:480
chr15	75503147	rs3743211	G	A	7305.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr15	75518241	rs1994639	G	C	1471.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.84;QD=43.29;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr15	75518246	rs1994640	A	G	1445.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=52.69;QD=43.81;SOR=1.352;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr15	75521833	rs6495165	G	C	3408.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr15	75630562	rs143588533	C	T	3213.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:63,131:0.68:194
chr15	75630635	rs7166436	A	T	927.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:12,35:0.74:47
chr15	75640423	rs79244935	C	T	1315.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:31,57:0.65:88
chr15	75643714	rs11634109	T	C	1695.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:39,77:0.66:116
chr15	75643759	rs7182283	G	T	785.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:81,43:0.35:124
chr15	75650836	rs1128933	G	A	1875.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.666;ClippingRankSum=0.000;DB;DP=376;ExcessHet=3.0103;FS=2.426;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.02;ReadPosRankSum=-2.240;SOR=0.855;set=HC	GT:AD:AF:DP	0/1:262,112:0.30:374
chr15	75650972	rs3809549	G	A	1662.77	.	AC=1;AF=0.500;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	0/1:238,98:0.29:336
chr15	75651022	rs149997575	C	CCCACATGCTGCCCAGCCCATA	13191.73	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr15	75651981	rs78610801	G	A	1315.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:106,68:0.39:174
chr15	75653378	rs7174408	T	C	2601.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr15	75655765	rs34386653	G	GT	1943.73	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:26,60:0.70:86
chr15	75660662	rs75458893	C	T	579.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:13,24:0.65:37
chr15	75664570	rs4886696	AA	TT	6071.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.32;SOR=1.525;set=HC	GT:AD:AF:DP	1/1:0,137:1.00:137
chr15	75702754	rs79147131	C	T	592.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:28,25:0.47:53
chr15	75816458	.	T	TA	158.70	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.262;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.90;MQRankSum=0.722;QD=6.90;ReadPosRankSum=0.547;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:8,15:0.65:23
chr15	75870906	rs138732372	G	A	153.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:13,9:0.41:22
chr15	75890612	rs3210683	G	A	327.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:14,14:0.50:28
chr15	75890689	rs1128585	G	T	1291.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:46,62:0.57:108
chr15	75897646	rs372246427	AT	A	211.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.804;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.003;QD=5.72;ReadPosRankSum=0.000;SOR=0.566;set=HC	GT:AD:AF:DP	0/1:13,24:0.65:37
chr15	75909933	.	CT	C	212.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.093;ClippingRankSum=0.000;DP=164;ExcessHet=3.0103;FS=1.973;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=0.876;QD=1.65;ReadPosRankSum=-0.309;SOR=0.419;set=HC	GT:AD:AF:DP	0/1:96,33:0.26:129
chr15	75967814	rs1127646	A	G	386.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr15	75970070	rs8023621	C	T	5406.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr15	75977920	rs62027240	A	G	1418.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr15	75979782	rs8030131	G	T	3946.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;MQ=59.89;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr15	75980112	rs4414463	A	G	11169.77	.	AC=2;AF=1.00;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	1/1:0,423:1.00:423
chr15	75981507	rs12900539	A	G	2038.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr15	75982428	rs7182906	C	T	4399.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr15	76030993	rs12904654	A	G	1437.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr15	76031008	rs7181595	C	T	1352.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr15	76067911	rs12101948	A	G	2951.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr15	76067987	rs34243492	A	G	6128.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr15	76074518	rs3991352	T	G	3861.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr15	76075943	rs11852472	C	A	1600.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr15	76114318	rs35830282	GA	G	481.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.382;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=0.797;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=2.260;QD=3.30;ReadPosRankSum=0.821;SOR=0.545;set=HC	GT:AD:AF:DP	0/1:83,63:0.43:146
chr15	76168406	rs66475371	C	CA	236.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.631;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=0.693;QD=9.47;ReadPosRankSum=-1.352;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:10,15:0.60:25
chr15	76175828	rs1868020	G	A	741.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr15	76182949	rs335713	C	T	1917.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr15	76183191	rs62028936	T	A	2294.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr15	76189624	rs335692	A	G	563.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr15	76191802	rs335689	G	A	6460.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr15	76191852	rs335688	T	C	6033.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr15	76191966	rs335687	T	C	1290.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr15	76197071	rs3073843	A	ATCT	2145.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr15	76205523	.	A	AT	195.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.693;ClippingRankSum=0.000;DP=92;ExcessHet=3.0103;FS=0.965;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.28;ReadPosRankSum=-0.111;SOR=0.844;set=HC	GT:AD:AF:DP	0/1:64,22:0.26:86
chr15	76222140	rs335679	G	T	783.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr15	76248427	rs10711025	GT	G	926.50	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:10,60:0.86:70
chr15	76251344	rs11638364	C	T	726.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr15	76251452	rs12913434	A	G	2206.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr15	76496232	rs937732	G	A	9017.77	.	AC=1;AF=0.500;AN=2;DB;DP=635;set=Intersection	GT:AD:AF:DP	0/1:209,410:0.66:619
chr15	76496340	rs937733	C	T	5825.77	.	AC=1;AF=0.500;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	0/1:128,246:0.66:374
chr15	76510073	rs1533600	G	A	695.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr15	76518346	rs11281932	C	CCCTTA	1791.73	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr15	76584686	rs3215000	T	TA	343.73	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:39,19:0.33:58
chr15	76588127	rs59517673	G	GT	127.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.747;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=11.957;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=1.311;QD=3.55;ReadPosRankSum=-0.488;SOR=0.039;set=HC	GT:AD:AF:DP	0/1:22,14:0.39:36
chr15	76603610	rs3215142	CA	C	4081.73	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:76,116:0.60:192
chr15	76603928	rs62027052	C	T	422.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:8,18:0.69:26
chr15	76630303	rs4636879	T	C	12370.77	.	AC=2;AF=1.00;AN=2;DB;DP=478;set=Intersection	GT:AD:AF:DP	1/1:0,471:1.00:471
chr15	76632907	rs7180257	A	G	7692.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr15	76673627	rs17460201	T	C	317.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:27,17:0.39:44
chr15	76673716	rs3765115	T	C	2591.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:80,118:0.60:198
chr15	76726465	rs1607017	G	T	2720.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:91,126:0.58:217
chr15	76763514	rs11072597	C	A	1285.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:40,56:0.58:96
chr15	76957958	rs280021	A	G	362.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.91;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr15	77064389	rs66496622	TGAA	T	1794.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;MQ=60.21;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr15	77066606	.	C	CA	47.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.266;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.16;ReadPosRankSum=-1.219;SOR=0.798;set=HC	GT:AD:AF:DP	0/1:31,10:0.24:41
chr15	77085740	rs3102707	C	A	777.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr15	77087785	rs11852395	T	C	335.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:26,19:0.42:45
chr15	77148253	rs11637494	A	G	1073.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:16,47:0.75:63
chr15	77176158	rs3812908	T	C	1426.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:30,66:0.69:96
chr15	77176200	rs3812909	A	T	1119.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.076;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.13;ReadPosRankSum=0.114;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:21,53:0.72:74
chr15	77197745	rs907594	C	A	1996.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:42,80:0.66:122
chr15	77231158	rs4886841	C	T	6426.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr15	77234101	.	C	CT	158.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.673;ClippingRankSum=0.000;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.38;ReadPosRankSum=-0.378;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:88,27:0.23:115
chr15	77241568	rs1711018	T	C	4308.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr15	77288018	rs2254441	G	A	734.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:15,32:0.68:47
chr15	77308387	rs7173067	G	A	1704.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:139,92:0.40:231
chr15	77310345	rs12900395	C	G	672.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:50,28:0.36:78
chr15	77310636	rs3812911	G	C	869.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:115,47:0.29:162
chr15	77322029	rs3935339	C	T	94.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.009;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=3.114;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.31;ReadPosRankSum=-0.143;SOR=0.132;set=HC	GT:AD:AF:DP	0/1:33,8:0.20:41
chr15	77323009	rs2469237	T	C	5033.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr15	77324880	rs4078354	A	G	957.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:155,58:0.27:213
chr15	77328108	rs11373069	G	GA	1637.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr15	77344793	rs11737	T	A	2215.77	.	AC=1;AF=0.500;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	0/1:208,117:0.36:325
chr15	77363451	rs11072641	T	C	59.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.954;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=7.656;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.32;ReadPosRankSum=-0.059;SOR=0.041;set=HC	GT:AD:AF:DP	0/1:13,5:0.28:18
chr15	77406396	rs3743479	C	T	228.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.185;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.69;ReadPosRankSum=2.123;SOR=0.428;set=HC	GT:AD:AF:DP	0/1:47,15:0.24:62
chr15	77407114	rs1867780	C	G	1224.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.169;ClippingRankSum=0.000;DB;DP=215;ExcessHet=3.0103;FS=23.433;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.80;ReadPosRankSum=-0.666;SOR=1.812;set=HC	GT:AD:AF:DP	0/1:144,67:0.32:211
chr15	77471105	rs11856513	C	A	476.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:41,24:0.37:65
chr15	77764227	.	A	AT	74.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.143;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.11;ReadPosRankSum=0.696;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:16,8:0.33:24
chr15	77907145	rs3743481	G	A	4085.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:110,176:0.62:286
chr15	77907535	rs2271396	C	G	3604.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:60,146:0.71:206
chr15	77907775	rs2271397	T	C	10153.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.862;ClippingRankSum=0.000;DB;DP=400;ExcessHet=3.0103;FS=3.968;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.58;ReadPosRankSum=-0.300;SOR=0.517;set=HC	GT:AD:AF:DP	0/1:141,256:0.64:397
chr15	77907784	rs2271398	G	A	10270.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.237;ClippingRankSum=0.000;DB;DP=407;ExcessHet=3.0103;FS=1.838;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.42;ReadPosRankSum=-0.618;SOR=0.539;set=HC	GT:AD:AF:DP	0/1:140,264:0.65:404
chr15	78189075	rs4569232	G	A	13138.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.93;QD=43.08;SOR=0.796;set=HC	GT:AD:AF:DP	1/1:0,305:1.00:305
chr15	78189084	rs4243062	T	C	12688.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.38;QD=44.68;SOR=0.875;set=HC	GT:AD:AF:DP	1/1:0,284:1.00:284
chr15	78189370	rs4441238	A	C	3668.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr15	78196212	rs7178928	A	G	496.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr15	78211345	rs12592294	A	G	1996.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr15	78211393	rs28595390	A	T	2146.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:56,95:0.63:151
chr15	78232240	rs12907147	G	C	1683.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.296;ClippingRankSum=0.000;DB;DP=272;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=1.073;QD=6.28;ReadPosRankSum=0.849;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:171,97:0.36:268
chr15	78235104	rs60257193	T	G	8865.77	.	AC=1;AF=0.500;AN=2;DB;DP=569;set=Intersection	GT:AD:AF:DP	0/1:174,388:0.69:562
chr15	78268716	rs11072706	G	A	248.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.204;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.02;ReadPosRankSum=0.326;SOR=0.904;set=HC	GT:AD:AF:DP	0/1:17,14:0.45:31
chr15	78269731	rs11852862	G	T	1128.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.62;QD=43.41;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr15	78269737	rs11852790	A	T	1128.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.44;QD=45.15;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr15	78269738	rs11852821	C	T	1128.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.44;QD=45.15;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr15	78269747	rs11852867	G	A	1083.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.48;QD=45.16;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr15	78269760	rs71402931	C	T	916.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=52.90;QD=43.66;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr15	78269762	rs78023616	C	T	916.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=52.90;QD=43.66;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr15	78269763	rs75184028	A	G	916.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=52.90;QD=43.66;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr15	78269793	rs67603081	CT	C	690.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr15	78269798	rs142983118	G	A	699.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.29;QD=49.98;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr15	78269801	rs140951103	G	A	601.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.29;QD=42.98;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr15	78269802	rs143146370	T	TG	592.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr15	78272318	rs12439777	C	G	1750.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.914;ClippingRankSum=0.000;DB;DP=503;ExcessHet=3.0103;FS=1.316;MLEAC=1;MLEAF=0.500;MQ=59.53;MQRankSum=-6.562;QD=3.49;ReadPosRankSum=-1.457;SOR=0.844;set=HC	GT:AD:AF:DP	0/1:382,120:0.24:502
chr15	78276660	rs12916320	A	G	4133.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr15	78310306	rs35403054	GA	G	1263.73	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:48,90:0.65:138
chr15	78337225	rs4886995	G	A	749.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:160,51:0.24:211
chr15	78369972	rs7176425	G	C	962.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr15	78390414	rs2289524	T	C	7447.77	.	AC=1;AF=0.500;AN=2;DB;DP=569;set=Intersection	GT:AD:AF:DP	0/1:211,350:0.62:561
chr15	78393352	rs181099810	C	T	2436.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:182,126:0.41:308
chr15	78398146	rs10456	G	A	16597.77	.	AC=1;AF=0.500;AN=2;DB;DP=1121;set=Intersection	GT:AD:AF:DP	0/1:378,738:0.66:1116
chr15	78398161	rs117153558	C	T	6630.77	.	AC=1;AF=0.500;AN=2;DB;DP=1104;set=Intersection	GT:AD:AF:DP	0/1:729,369:0.34:1098
chr15	78401540	rs11390540	A	ACC	609.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.137;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=9.031;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=38.11;ReadPosRankSum=0.453;SOR=4.034;set=HC	GT:AD:AF:DP	1/1:1,15:0.94:16
chr15	78402001	rs11072729	A	C	504.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:15,21:0.58:36
chr15	78403004	rs1992469	A	G	3875.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr15	78403179	rs2867986	C	G	3221.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr15	78403213	rs148709604	ACAGGTCTGCCAACTACAG	A	1473.73	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:26,38:0.59:64
chr15	78423433	rs112308337	G	A	2894.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.746;ClippingRankSum=0.000;DB;DP=199;ExcessHet=3.0103;FS=2.211;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.77;ReadPosRankSum=0.524;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:58,138:0.70:196
chr15	78423479	rs8040395	T	C	9127.77	.	AC=2;AF=1.00;AN=2;DB;DP=372;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.43;SOR=1.425;set=HC	GT:AD:AF:DP	1/1:0,359:1.00:359
chr15	78423596	rs11547207	A	C	6331.77	.	AC=1;AF=0.500;AN=2;DB;DP=448;set=Intersection	GT:AD:AF:DP	0/1:158,284:0.64:442
chr15	78461457	rs17674205	A	G	670.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:9,26:0.74:35
chr15	78472157	.	T	TCACACACA	162.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.414;ClippingRankSum=-0.000;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=20.34;ReadPosRankSum=0.414;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:3,5:0.62:8
chr15	78472186	rs58092270	T	C	172.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:3,5:0.62:8
chr15	78474517	rs6495277	T	C	1952.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:45,90:0.67:135
chr15	78474997	.	G	A	3118.77	.	AC=1;AF=0.500;AN=2;DP=506;set=Intersection	GT:AD:AF:DP	0/1:327,170:0.34:497
chr15	78504780	rs10706612	GA	G	1662.73	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:49,90:0.65:139
chr15	78526556	rs10162606	C	T	1157.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr15	78556589	rs12898295	C	G	1212.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr15	78557005	rs28484827	A	G	288.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr15	78557086	rs66489434	GC	G	7105.73	.	AC=2;AF=1.00;AN=2;DB;DP=237;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.14;QD=30.24;SOR=1.407;set=HC	GT:AD:AF:DP	1/1:0,235:1.00:235
chr15	78558509	rs2037347	G	A	3005.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr15	78563103	rs3169166	A	C	1452.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr15	78572359	rs9806426	C	G	8226.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr15	78581892	rs1879153	C	T	1915.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr15	78587743	rs34232388	C	CT	82.25	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.566;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=3.332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.28;ReadPosRankSum=0.921;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:2,6:0.75:8
chr15	78587910	rs1040262	A	G	5321.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr15	78632830	rs1127472	C	G	453.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:74,29:0.28:103
chr15	78633595	rs2139440	T	G	7017.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr15	78758677	rs2958720	G	C	2383.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr15	78758853	rs2938672	A	C	880.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr15	78777312	rs9788758	G	A	2250.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr15	78780104	rs2230940	T	C	4557.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr15	78786410	rs4887060	A	C	3981.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr15	78789488	rs13180	C	T	6873.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:2,251:0.99:253
chr15	78807231	rs148681032	C	CCTCT	395.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.100;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=1.606;MLEAC=1;MLEAF=0.500;MQ=60.48;MQRankSum=-0.794;QD=11.31;ReadPosRankSum=0.325;SOR=0.392;set=HC	GT:AD:AF:DP	0/1:21,14:0.40:35
chr15	78807250	.	C	CTCTCTCTCTA	509.73	.	AC=1;AF=0.500;AN=2;DP=62;set=Intersection	GT:AD:AF:DP	0/1:30,24:0.44:54
chr15	78807252	rs59105191	A	C	358.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:31,16:0.34:47
chr15	78819627	rs67056220	CA	C	110.52	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.183;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=1.006;QD=3.68;ReadPosRankSum=-0.674;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:14,16:0.53:30
chr15	78825917	rs3885951	A	G	1654.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:230,97:0.30:327
chr15	78834689	rs2292117	A	G	1936.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr15	78836631	rs67437837	CTGA	C	7193.73	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr15	78841220	rs8053	T	C	2972.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr15	78857896	rs503464	T	A	1702.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:35,75:0.68:110
chr15	78857939	rs55853698	T	G	1015.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:153,66:0.30:219
chr15	78857986	rs55781567	C	G	1479.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.745;ClippingRankSum=0.000;DB;DP=324;ExcessHet=3.0103;FS=2.060;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.57;ReadPosRankSum=-2.002;SOR=0.566;set=HC	GT:AD:AF:DP	0/1:232,92:0.28:324
chr15	78879242	rs555018	G	A	179.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:14,10:0.42:24
chr15	78880481	rs647041	T	C	190.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chr15	78882925	rs16969968	G	A	2469.77	.	AC=1;AF=0.500;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	0/1:270,129:0.32:399
chr15	78894339	rs1051730	G	A	1969.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:215,111:0.34:326
chr15	78909452	rs3743075	T	C	647.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:81,39:0.33:120
chr15	78909480	rs3743074	G	A	641.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:74,37:0.33:111
chr15	78909539	rs3743073	G	T	337.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.631;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.04;ReadPosRankSum=0.891;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:30,18:0.38:48
chr15	78911181	rs8040868	T	C	796.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:129,48:0.27:177
chr15	78911261	rs2869547	T	C	1401.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr15	78913067	rs66793222	ACAG	A	1681.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.622;ClippingRankSum=0.000;DB;DP=237;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=2.255;QD=8.71;ReadPosRankSum=-0.244;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:140,53:0.27:193
chr15	78917399	rs1948	A	G	2061.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.466;ClippingRankSum=0.000;DB;DP=428;ExcessHet=3.0103;FS=0.573;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.93;ReadPosRankSum=-1.037;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:290,128:0.31:418
chr15	79044330	rs11632672	A	G	359.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr15	79045517	rs34816637	G	A	2665.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.200;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=2.821;MLEAC=1;MLEAF=0.500;MQ=46.24;MQRankSum=0.037;QD=15.59;ReadPosRankSum=-1.368;SOR=0.925;set=HC	GT:AD:AF:DP	0/1:60,111:0.65:171
chr15	79045521	rs12917502	T	C	6570.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.17;QD=40.07;SOR=1.026;set=HC	GT:AD:AF:DP	1/1:0,164:1.00:164
chr15	79054900	rs7495616	C	G	2543.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr15	79054911	rs11852980	A	G	577.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.190;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.945;MLEAC=1;MLEAF=0.500;MQ=57.44;MQRankSum=-7.462;QD=6.72;ReadPosRankSum=-1.502;SOR=0.931;set=HC	GT:AD:AF:DP	0/1:64,22:0.26:86
chr15	79054919	rs11853054	G	A	481.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.336;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=3.980;MLEAC=1;MLEAF=0.500;MQ=57.09;MQRankSum=-8.577;QD=6.34;ReadPosRankSum=0.261;SOR=1.312;set=HC	GT:AD:AF:DP	0/1:60,16:0.21:76
chr15	79054932	rs11072801	G	C	268.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:52,15:0.22:67
chr15	79056526	rs3830240	TC	T	113	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr15	79057093	rs6495267	G	A	49.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.766;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=2.162;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.76;ReadPosRankSum=-0.303;SOR=0.799;set=HC	GT:AD:AF:DP	0/1:13,5:0.28:18
chr15	79058572	rs1809421	T	G	2437.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr15	79058923	rs1809422	G	A	252.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr15	79059449	rs1810165	G	A	788.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:20,37:0.65:57
chr15	79063474	rs1809409	A	T	113.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.582;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=1.527;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.56;ReadPosRankSum=-0.339;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:23,9:0.28:32
chr15	79063481	rs190873686	G	A	445.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:9,21:0.70:30
chr15	79064080	rs11635931	G	A	424.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:68,27:0.28:95
chr15	79064143	rs11635870	C	G	477.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:66,31:0.32:97
chr15	79065380	rs7177201	T	C	911.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.42;QD=36.47;SOR=3.528;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr15	79065380	.	TCAGGTGAAGAGCAT	CCAGATGAAGAGCAC,CCAGGTGAAGAGCAT	1000	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.41;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=2;MMLQ=28;MQ=52.52;NF=7,24;NR=1,2;PP=422,1000;QD=60.6834843578;SC=GAAGGGGCCATCAGGTGAAGA;SbPval=0.46;Source=Platypus;TC=27;TCF=25;TCR=2;TR=8,26;WE=79065402;WS=79065372;set=Platypus	GT:AF:DP	0/1:0.30:27
chr15	79065384	rs28577997	G	A	330.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.895;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=2.688;MLEAC=1;MLEAF=0.500;MQ=55.43;MQRankSum=0.093;QD=12.72;ReadPosRankSum=-0.373;SOR=0.132;set=HC	GT:AD:AF:DP	0/1:16,10:0.38:26
chr15	79065394	rs3743061	T	C	292.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.580;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.10;MQRankSum=0.273;QD=10.46;ReadPosRankSum=-0.273;SOR=0.202;set=HC	GT:AD:AF:DP	0/1:19,9:0.32:28
chr15	79065562	rs8036224	A	G	2406.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr15	79069121	rs11854507	A	G	1141.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:96,60:0.38:156
chr15	79069734	rs7161774	G	T	2191.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:32,95:0.75:127
chr15	79083376	rs2277546	C	A	340.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:25,17:0.40:42
chr15	79083591	rs2277545	T	C	1055.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:94,54:0.36:148
chr15	79089007	rs3743057	T	C	2315.77	.	AC=1;AF=0.500;AN=2;DB;DP=505;set=Intersection	GT:AD:AF:DP	0/1:363,141:0.28:504
chr15	79089111	rs3825807	A	G	610.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:77,30:0.28:107
chr15	79092750	rs7173267	G	C	1554.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:203,92:0.31:295
chr15	79103563	.	G	C	138.77	.	AC=1;AF=0.500;AN=2;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr15	79132814	rs7402877	T	C	1418.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:28,57:0.67:85
chr15	79133026	rs6495341	C	T	3643.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:86,165:0.66:251
chr15	79165441	rs8034658	G	T	1585.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:41,73:0.64:114
chr15	79173005	rs17832351	A	G	817.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:22,37:0.63:59
chr15	79215568	rs34577742	C	T	1506.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:51,67:0.57:118
chr15	79217690	rs2044226	G	C	11789.77	.	AC=2;AF=1.00;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	1/1:0,444:1.00:444
chr15	79223681	rs2289699	G	A	2406.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:52,105:0.67:157
chr15	79229959	rs60254670	TGGCCAGAATG	T	1341.73	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:15,34:0.69:49
chr15	79231478	rs12148472	T	C	2952.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:62,135:0.69:197
chr15	79231518	rs11638844	A	G	1083.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.036;ClippingRankSum=0.000;DB;DP=247;ExcessHet=3.0103;FS=1.713;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.41;ReadPosRankSum=0.981;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:176,70:0.28:246
chr15	79231523	rs35398112	G	GA	568.73	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:175,60:0.26:235
chr15	79231616	rs10400902	A	G	966.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:86,51:0.37:137
chr15	79237180	rs1036937	C	A	2519.77	.	AC=1;AF=0.500;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	0/1:276,139:0.33:415
chr15	79237247	rs1036938	C	G	3044.77	.	AC=1;AF=0.500;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	0/1:281,163:0.37:444
chr15	79237293	rs2289702	C	T	4076.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:130,190:0.59:320
chr15	79237324	rs1036939	C	A	1536.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:139,79:0.36:218
chr15	79237403	rs67943698	GGA	G	562.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:23,19:0.45:42
chr15	79237405	rs28704487	A	G	581.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:19,23:0.55:42
chr15	79254480	rs4778732	T	A	3205.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr15	79264097	rs4238514	G	A	898.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr15	79265866	rs3743195	G	A	1204.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:157,68:0.30:225
chr15	79273098	rs2278650	C	G	1058.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:92,50:0.35:142
chr15	79277150	rs3840034	A	AC	641.73	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:60,23:0.28:83
chr15	79277247	rs4778750	A	C	8453.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr15	79277298	rs3803544	T	C	1885.77	.	AC=1;AF=0.500;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	0/1:268,104:0.28:372
chr15	79277511	rs2230518	A	G	2590.77	.	AC=1;AF=0.500;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	0/1:295,147:0.33:442
chr15	79277608	rs4778751	G	A	4654.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr15	79288011	rs6495359	A	C	3139.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr15	79291262	rs12914556	C	T	2437.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.610;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.69;ReadPosRankSum=0.241;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:53,113:0.68:166
chr15	79296172	rs1562008	G	A	1490.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.748;ClippingRankSum=0.000;DB;DP=220;ExcessHet=3.0103;FS=3.183;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.93;ReadPosRankSum=1.743;SOR=0.506;set=HC	GT:AD:AF:DP	0/1:136,79:0.37:215
chr15	79312330	rs2304993	G	A	1417.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:28,64:0.70:92
chr15	79324419	rs2304991	A	G	555.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:69,33:0.32:102
chr15	79327686	rs736554	C	T	286.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:39,16:0.29:55
chr15	79350624	rs16970524	G	A	1461.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:33,58:0.64:91
chr15	79586361	rs8038778	T	C	9196.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr15	79606137	rs3825933	G	A	5190.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr15	79606408	rs3784544	C	T	1547.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr15	79614206	rs906440	T	A	1727.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr15	79614224	rs8037898	A	G	1499.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:25,56:0.69:81
chr15	79614418	rs906439	A	G	12120.77	.	AC=2;AF=1.00;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	1/1:0,463:1.00:463
chr15	79750127	rs2902954	A	G	2275.77	.	AC=1;AF=0.500;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	0/1:212,120:0.36:332
chr15	79750307	rs1004724	T	C	6279.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr15	79755604	rs2297773	A	G	5732.77	.	AC=1;AF=0.500;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	0/1:171,260:0.60:431
chr15	79755685	rs3831283	GGT	G	2953.73	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:48,77:0.62:125
chr15	80137560	rs8923	T	C	1579.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:140,82:0.37:222
chr15	80191343	rs7257	G	A	8598.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:2,325:0.99:327
chr15	80191488	rs12440609	C	T	2119.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.384;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=3.102;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.50;ReadPosRankSum=0.345;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:61,96:0.61:157
chr15	80214976	rs78016257	GTGC	G	914.73	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:55,27:0.33:82
chr15	80215597	rs2303824	G	T	4797.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:122,215:0.64:337
chr15	80216015	rs3803540	C	A	5105.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:111,222:0.67:333
chr15	80216165	rs17214656	G	T	548.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:76,34:0.31:110
chr15	80216176	rs34149442	G	T	499.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:62,30:0.33:92
chr15	80365745	rs2866367	T	G	351.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:12,15:0.56:27
chr15	80367831	rs2469600	G	C	545.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:8,22:0.73:30
chr15	80405098	rs12594035	C	G	6900.77	.	AC=1;AF=0.500;AN=2;DB;DP=488;set=Intersection	GT:AD:AF:DP	0/1:174,311:0.64:485
chr15	80412870	rs79140833	T	C	448.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:77,28:0.27:105
chr15	80413935	rs934003	C	T	341.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:9,15:0.62:24
chr15	80414173	rs1522636	C	G	905.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:34,42:0.55:76
chr15	80450328	rs1370276	T	C	329.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:23,16:0.41:39
chr15	80450389	rs1370275	G	A	681.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:62,36:0.37:98
chr15	80452075	rs1370274	T	C	1948.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:213,110:0.34:323
chr15	80452268	rs1370273	G	A	475.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:33,23:0.41:56
chr15	80452886	rs733679	T	G	1093.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.549;ClippingRankSum=0.000;DB;DP=219;ExcessHet=3.0103;FS=1.926;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.11;ReadPosRankSum=-0.049;SOR=0.872;set=HC	GT:AD:AF:DP	0/1:154,60:0.28:214
chr15	80454745	rs2114716	T	C	1617.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:174,90:0.34:264
chr15	80460524	rs1545119	A	G	5816.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:2,211:0.99:213
chr15	80460576	.	G	GT	328.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.782;ClippingRankSum=0.000;DP=225;ExcessHet=3.0103;FS=3.575;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=0.000;QD=1.58;ReadPosRankSum=-0.847;SOR=1.039;set=HC	GT:AD:AF:DP	0/1:153,55:0.26:208
chr15	80464669	rs7180031	A	G	1375.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:21,60:0.74:81
chr15	80465248	rs58363292	GA	G	5145.73	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr15	80465300	rs3752693	G	A	3947.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:97,177:0.65:274
chr15	80470040	rs2162550	G	A	1126.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:46,52:0.53:98
chr15	80472431	rs2043691	C	A	5658.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr15	80672310	rs35187631	A	C	3965.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:77,168:0.69:245
chr15	80672506	rs35375628	T	C	5084.77	.	AC=1;AF=0.500;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	0/1:168,226:0.57:394
chr15	80690335	rs3743408	C	T	2191.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:53,100:0.65:153
chr15	80736696	.	G	GGTGT	627.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.579;ClippingRankSum=0.000;DP=117;ExcessHet=3.0103;FS=2.522;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.000;QD=9.51;ReadPosRankSum=0.295;SOR=1.119;set=HC	GT:AD:AF:DP	0/1:46,20:0.30:66
chr15	80762526	rs5814026	TC	T	7172.73	.	AC=2;AF=1.00;AN=2;DB;DP=247;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.83;QD=29.52;SOR=1.378;set=HC	GT:AD:AF:DP	1/1:0,243:1.00:243
chr15	80806183	rs11072922	T	C	2560.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr15	80845136	rs3924894	CT	TC	15113.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,340:1.00:340
chr15	80987812	rs62007944	T	C	5083.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr15	81176721	rs35343835	C	G	349.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:37,20:0.35:57
chr15	81179876	rs11631636	G	A	631.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:70,33:0.32:103
chr15	81179926	rs2271159	G	T	2425.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.121;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=1.209;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.48;ReadPosRankSum=-0.740;SOR=0.802;set=HC	GT:AD:AF:DP	0/1:68,112:0.62:180
chr15	81180981	rs8028511	G	A	378.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:63,23:0.27:86
chr15	81193390	rs72740126	G	A	1271.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:132,71:0.35:203
chr15	81199236	rs2271164	A	G	1796.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:54,83:0.61:137
chr15	81212608	rs1553647	G	A	15432.77	.	AC=2;AF=1.00;AN=2;DB;DP=591;set=Intersection	GT:AD:AF:DP	1/1:0,579:1.00:579
chr15	81217848	rs2271163	C	T	2353.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr15	81234741	rs1553646	C	G	1698.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr15	81410106	rs1533055	G	A	11123.77	.	AC=1;AF=0.500;AN=2;DB;DP=782;set=Intersection	GT:AD:AF:DP	0/1:271,506:0.65:777
chr15	81410202	rs2280440	C	T	9109.77	.	AC=1;AF=0.500;AN=2;DB;DP=641;set=Intersection	GT:AD:AF:DP	0/1:210,409:0.66:619
chr15	81410488	rs2250029	G	A	1628.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:32,72:0.69:104
chr15	81426539	rs2683255	G	C	614.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:10,22:0.69:32
chr15	81427575	rs12900447	A	G	975.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:73,52:0.42:125
chr15	81430287	rs60867938	C	CA	239.73	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:12,14:0.54:26
chr15	81430305	rs55908952	C	G	402.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:22,17:0.44:39
chr15	81578189	rs75838746	A	G	2911.77	.	AC=1;AF=0.500;AN=2;DB;DP=474;set=Intersection	GT:AD:AF:DP	0/1:309,163:0.35:472
chr15	81582406	rs11632576	G	C	436.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:34,21:0.38:55
chr15	81582868	rs8031107	G	A	662.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.028;ClippingRankSum=0.000;DB;DP=208;ExcessHet=3.0103;FS=0.606;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.19;ReadPosRankSum=1.003;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:159,49:0.24:208
chr15	81584389	rs4072680	C	T	573.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:40,27:0.40:67
chr15	81589448	rs17875502	G	A	355.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:17,17:0.50:34
chr15	81600995	rs4238526	A	G	3955.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr15	81611637	rs118161618	G	A	1755.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:49,76:0.61:125
chr15	81624768	rs4417518	C	T	4770.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr15	81625385	rs11636318	C	T	8241.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr15	81631681	rs4489964	C	T	3264.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr15	81636086	.	C	CA	272.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.186;ClippingRankSum=0.000;DP=68;ExcessHet=3.0103;FS=1.276;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.20;ReadPosRankSum=-0.025;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:40,25:0.38:65
chr15	81636267	rs7161991	C	T	11469.77	.	AC=2;AF=1.00;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	1/1:0,421:1.00:421
chr15	81637284	rs4278705	G	A	3056.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr15	81642100	.	CT	C	99.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.138;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=0.971;QD=2.62;ReadPosRankSum=-2.500;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:22,16:0.42:38
chr15	81649001	rs7167034	T	C	457.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:55,28:0.34:83
chr15	81651651	rs12903128	G	A	940.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:100,51:0.34:151
chr15	81654757	rs5814058	T	TG	1129.73	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:23,36:0.61:59
chr15	81665211	rs71451583	C	CGTGTGTGT	210.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.300;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.02;ReadPosRankSum=0.155;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:27,8:0.23:35
chr15	81666529	rs11634486	G	A	507.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:61,29:0.32:90
chr15	82335444	rs11073028	G	A	1821.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.87;SOR=3.150;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr15	82387776	rs1532750	T	C	3692.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:94,166:0.64:260
chr15	82387951	rs1969090	G	C	2866.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr15	82431219	rs2457497	A	G	1163.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:86,60:0.41:146
chr15	82443939	rs4725	G	A	1726.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:157,94:0.37:251
chr15	82444437	rs905450	A	G	2622.77	.	AC=1;AF=0.500;AN=2;DB;DP=506;set=Intersection	GT:AD:AF:DP	0/1:342,158:0.32:500
chr15	82450268	rs9944185	C	A	658.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:81,34:0.30:115
chr15	82512429	rs2292189	C	G	2750.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr15	82517458	rs62012011	A	G	448.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:37,24:0.39:61
chr15	82517649	rs371280599	TA	T	300.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.800;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=0.870;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=0.000;QD=3.38;ReadPosRankSum=-0.199;SOR=0.559;set=HC	GT:AD:AF:DP	0/1:58,31:0.35:89
chr15	82520640	.	T	G	962.77	.	AC=1;AF=0.500;AN=2;DP=174;set=Intersection	GT:AD:AF:DP	0/1:116,55:0.32:171
chr15	82523358	rs11073036	G	A	703.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:29,31:0.52:60
chr15	82523405	rs12324875	A	G	305.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:9,12:0.57:21
chr15	82530630	rs1972460	A	G	3553.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr15	82544927	rs3902959	C	T	3492.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr15	82545214	rs4344697	A	T	2337.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr15	82555242	rs11631813	A	G	8170.77	.	AC=1;AF=0.500;AN=2;DB;DP=549;set=Intersection	GT:AD:AF:DP	0/1:183,363:0.66:546
chr15	82558034	rs3858954	G	C	761.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr15	82563991	rs16973457	C	T	5443.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr15	82574879	rs11630197	T	C	1905.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:43,84:0.66:127
chr15	82575493	rs142677476	TAATA	T	677.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.156;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=1.316;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.888;QD=6.58;ReadPosRankSum=-1.201;SOR=0.385;set=HC	GT:AD:AF:DP	0/1:80,23:0.22:103
chr15	83215134	rs62009918	C	T	407.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.002;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=1.947;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.96;ReadPosRankSum=-1.182;SOR=0.982;set=HC	GT:AD:AF:DP	0/1:77,26:0.25:103
chr15	83215251	rs1267657	T	C	4030.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:73,174:0.70:247
chr15	83221392	rs3850610	C	A	1139.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:156,67:0.30:223
chr15	83222444	rs11390316	G	GT	826.73	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:52,30:0.37:82
chr15	83224696	rs1145171	C	T	4283.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr15	83230904	rs66642827	CT	C	1307.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.451;ClippingRankSum=0.000;DB;DP=377;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.739;QD=4.16;ReadPosRankSum=2.772;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:167,147:0.47:314
chr15	83240293	rs783544	A	C	6585.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr15	83241984	rs11336258	AT	A	256.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.498;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=1.988;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.427;QD=2.42;ReadPosRankSum=-1.218;SOR=0.957;set=HC	GT:AD:AF:DP	0/1:66,40:0.38:106
chr15	83296073	rs61733713	C	T	4018.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:130,182:0.58:312
chr15	83297138	rs10400906	C	T	3375.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:91,162:0.64:253
chr15	83330873	rs72753906	C	T	329.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:34,19:0.36:53
chr15	83331155	rs2278355	C	T	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.834;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.16;ReadPosRankSum=-1.030;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:8,3:0.27:11
chr15	83334128	rs72045599	AACACACACACACACACACACACACACACAC	A	801.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.723;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=5.859;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.14;ReadPosRankSum=1.141;SOR=0.342;set=HC	GT:AD:AF:DP	0/1:31,30:0.49:61
chr15	83334419	rs7494860	T	C	686.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:110,44:0.29:154
chr15	83433778	rs8036185	A	G	272.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:33,16:0.33:49
chr15	83438317	rs71156049	C	CA	225.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.432;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.431;QD=5.13;ReadPosRankSum=-0.352;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:23,21:0.48:44
chr15	83455137	rs11259947	A	G	631.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.275;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.96;ReadPosRankSum=-0.526;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:73,33:0.31:106
chr15	83481880	rs35270670	A	G	255.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:18,13:0.42:31
chr15	83521036	rs1256429	C	T	2493.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.062;ClippingRankSum=0.000;DB;DP=612;ExcessHet=3.0103;FS=0.584;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.14;ReadPosRankSum=-0.810;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:437,166:0.28:603
chr15	83523368	rs1256426	C	G	1172.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.376;ClippingRankSum=0.000;DB;DP=221;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.33;ReadPosRankSum=-0.643;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:156,64:0.29:220
chr15	83528056	rs55861392	G	GT	92.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.260;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=2.199;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.88;ReadPosRankSum=0.291;SOR=1.426;set=HC	GT:AD:AF:DP	0/1:11,8:0.42:19
chr15	83561606	rs41310978	A	G	4147.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:110,183:0.62:293
chr15	83677270	.	C	CA	697.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.828;ClippingRankSum=0.000;DP=233;ExcessHet=3.0103;FS=1.407;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=0.000;QD=3.37;ReadPosRankSum=1.932;SOR=0.870;set=HC	GT:AD:AF:DP	0/1:136,71:0.34:207
chr15	83680287	rs4842860	A	G	1687.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:231,103:0.31:334
chr15	83680426	rs12906626	C	G	422.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:32,18:0.36:50
chr15	83698826	rs8038619	A	G	630.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:23,23:0.50:46
chr15	83735449	rs66531444	AGCCCG	A	256.73	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:14,8:0.36:22
chr15	83735926	rs8040457	C	G	284.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:21,13:0.38:34
chr15	83781598	rs80329914	CT	TG	3491.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.599;ClippingRankSum=0.000;DB;DP=322;ExcessHet=3.0103;FS=1.428;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.91;ReadPosRankSum=0.562;SOR=0.785;set=HC	GT:AD:AF:DP	0/1:219,101:0.32:320
chr15	83788529	.	G	A	454.77	.	AC=1;AF=0.500;AN=2;DP=69;set=Intersection	GT:AD:AF:DP	0/1:46,23:0.33:69
chr15	83808031	.	T	TA	110.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.886;ClippingRankSum=0.000;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.95;ReadPosRankSum=-0.936;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:91,25:0.22:116
chr15	83937081	rs11854520	C	T	700.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:78,35:0.31:113
chr15	84227865	rs56024090	A	G	102.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:10,6:0.38:16
chr15	84237456	rs56067534	G	C	506.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:27,24:0.47:51
chr15	84257351	rs7182482	G	A	1217.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:89,60:0.40:149
chr15	84373319	rs3079595	C	CAG	3271.73	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr15	84473325	.	CT	C	67.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.704;ClippingRankSum=-0.000;DP=22;ExcessHet=3.0103;FS=5.193;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.56;ReadPosRankSum=0.309;SOR=0.532;set=HC	GT:AD:AF:DP	0/1:9,10:0.53:19
chr15	84473531	rs7179507	G	A	694.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr15	84539619	rs4144691	C	G	1382.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:151,74:0.33:225
chr15	84554018	rs8028931	G	C	877.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:78,42:0.35:120
chr15	84566444	rs7162129	T	C	518.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:52,24:0.32:76
chr15	84566544	rs11259927	C	T	1940.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:182,105:0.37:287
chr15	84568504	rs6603004	A	G	3600.77	.	AC=1;AF=0.500;AN=2;DB;DP=511;set=Intersection	GT:AD:AF:DP	0/1:311,192:0.38:503
chr15	84581889	rs12439867	G	A	2399.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:139,68:0.33:207
chr15	84581904	rs4842923	T	C	2699.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:164,82:0.33:246
chr15	84582124	rs4842838	G	T	1811.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:168,98:0.37:266
chr15	84651290	rs7176737	T	C	2921.77	.	AC=1;AF=0.500;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	0/1:248,155:0.38:403
chr15	84657639	.	A	AT	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.702;ClippingRankSum=0.000;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.80;ReadPosRankSum=-2.456;SOR=0.467;set=HC	GT:AD:AF:DP	0/1:51,14:0.22:65
chr15	84705405	rs2279925	T	C	622.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:43,30:0.41:73
chr15	84749820	rs139071720	TTTA	T	6583.73	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr15	84753177	rs12437525	A	G	1706.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr15	84773393	rs151111553	G	A	2937.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:73,128:0.64:201
chr15	84950209	rs10152249	T	C	2306.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr15	85149771	rs2271433	G	T	8494.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr15	85159397	rs10083683	C	G	1371.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr15	85163998	rs2044502	G	C	9714.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	1/1:0,348:1.00:348
chr15	85164053	rs200130487	C	T	4994.77	.	AC=1;AF=0.500;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	0/1:124,210:0.63:334
chr15	85175102	rs2121452	G	A	5695.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr15	85186637	rs510875	G	C	1125.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr15	85188994	rs2271432	T	C	16823.77	.	AC=2;AF=1.00;AN=2;DB;DP=640;set=Intersection	GT:AD:AF:DP	1/1:0,626:1.00:626
chr15	85191274	rs7169629	C	G	4147.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr15	85198362	rs1107179	G	T	2636.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr15	85200754	rs2292462	G	T	1401.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr15	85231144	rs16974494	G	C	307.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr15	85235757	rs12900890	C	T	1359.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr15	85259053	rs6496355	C	A	1532.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr15	85333953	rs2241645	A	G	13321.77	.	AC=2;AF=1.00;AN=2;DB;DP=502;set=Intersection	GT:AD:AF:DP	1/1:2,494:1.00:496
chr15	85341859	rs8182086	G	A	11007.77	.	AC=1;AF=0.500;AN=2;DB;DP=787;set=Intersection	GT:AD:AF:DP	0/1:271,494:0.65:765
chr15	85360004	rs55736017	A	C	1429.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:14,59:0.81:73
chr15	85360101	rs11857356	T	C	5491.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr15	85370597	rs891286	C	G	857.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr15	85382193	rs1896864	C	A	2798.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr15	85383839	rs3803406	G	A	9115.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr15	85401259	rs306197	C	T	2815.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:54,118:0.69:172
chr15	85401419	rs167379	T	C	8058.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr15	85401680	rs35931910	C	T	775.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:59,40:0.40:99
chr15	85403105	rs34775428	C	A	6329.77	.	AC=1;AF=0.500;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	0/1:98,276:0.74:374
chr15	85405995	rs187316	T	C	3085.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:50,124:0.71:174
chr15	85407564	rs2289138	A	C	2042.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr15	85438118	rs7166433	T	G	775.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:67,40:0.37:107
chr15	85438311	rs151038463	C	CTTG	1480.73	.	AC=1;AF=0.500;AN=2;DB;DP=150;MQ=60.07;set=Intersection	GT:AD:AF:DP	0/1:98,43:0.30:141
chr15	85438397	rs8187753	A	C	900.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:18,34:0.65:52
chr15	85447431	rs2290272	G	A	5185.77	.	AC=1;AF=0.500;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	0/1:93,232:0.71:325
chr15	85448684	rs2290270	G	C	1546.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:19,63:0.77:82
chr15	85448875	rs8187758	C	A	3770.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:90,165:0.65:255
chr15	85448906	rs2290269	C	T	1123.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.475;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=1.885;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.82;ReadPosRankSum=-2.308;SOR=0.538;set=HC	GT:AD:AF:DP	0/1:126,67:0.35:193
chr15	85448992	rs67047009	G	T	795.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:12,31:0.72:43
chr15	85451852	rs4980349	T	C	2113.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:68,95:0.58:163
chr15	85452095	rs2305365	C	T	325.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:6,14:0.70:20
chr15	85461898	rs1562885	G	C	2893.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:70,121:0.63:191
chr15	85461971	rs1562884	G	A	1343.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:21,52:0.71:73
chr15	85467207	rs3825875	T	C	4871.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.277;ClippingRankSum=0.000;DB;DP=408;ExcessHet=3.0103;FS=2.485;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.12;ReadPosRankSum=1.484;SOR=0.870;set=HC	GT:AD:AF:DP	0/1:171,231:0.57:402
chr15	85476441	rs2305367	G	A	7281.77	.	AC=1;AF=0.500;AN=2;DB;DP=491;set=Intersection	GT:AD:AF:DP	0/1:157,333:0.68:490
chr15	85478153	rs7163966	G	T	2731.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr15	85478410	rs2242048	A	G	10208.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:0,359:1.00:359
chr15	85478523	rs17216016	C	T	6544.77	.	AC=1;AF=0.500;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	0/1:151,276:0.65:427
chr15	85478729	rs2242046	G	A	2026.77	.	AC=1;AF=0.500;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	0/1:227,107:0.32:334
chr15	85487960	rs11479919	GC	G	21320.73	.	AC=2;AF=1.00;AN=2;DB;DP=643;set=Intersection	GT:AD:AF:DP	1/1:0,631:1.00:631
chr15	85488128	rs2305366	G	A	2549.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:75,106:0.59:181
chr15	85488572	rs8025045	T	G	3380.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr15	85619248	rs11631548	C	T	820.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:114,50:0.30:164
chr15	85633845	rs17540307	A	G	621.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:64,37:0.37:101
chr15	85656568	rs2304422	A	G	1030.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:94,52:0.36:146
chr15	85659150	rs71466073	C	CAA	1012.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.541;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.090;QD=6.94;ReadPosRankSum=1.006;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:71,75:0.51:146
chr15	85666568	.	TACACACACACACACAC	T,TAC	262	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.24;FR=0.5000,0.5000;HP=2;HapScore=3;MGOF=11;MMLQ=21;MQ=60.0;NF=0,0;NR=14,14;PP=96,262;QD=7.07142857143;SC=ACTAATGGGATACACACACAC;SbPval=1.0;Source=Platypus;TC=34;TCF=3;TCR=31;TR=14,14;WE=85666593;WS=85666558;set=Platypus	GT:AF:DP	0/1:0.41:34
chr15	86029097	rs11856869	C	G	1410.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr15	86063681	rs11634589	A	G	126.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.284;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.52;ReadPosRankSum=0.473;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:5,6:0.55:11
chr15	86064909	rs1483581	T	C	587.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:23,24:0.51:47
chr15	86087212	rs7162720	C	T	15069.77	.	AC=2;AF=1.00;AN=2;DB;DP=542;set=Intersection	GT:AD:AF:DP	1/1:0,541:1.00:541
chr15	86087309	rs2291049	T	C	12715.77	.	AC=2;AF=1.00;AN=2;DB;DP=490;set=Intersection	GT:AD:AF:DP	1/1:0,477:1.00:477
chr15	86098507	rs7180143	G	T	386.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:28,19:0.40:47
chr15	86098647	rs7164821	T	C	1056.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:143,65:0.31:208
chr15	86122654	rs2061821	T	C	1351.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:129,75:0.37:204
chr15	86122779	rs2061822	T	C	958.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:81,50:0.38:131
chr15	86122916	rs2061823	T	C	1384.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:161,81:0.33:242
chr15	86123019	rs2061824	C	T	1665.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:196,89:0.31:285
chr15	86123170	rs745191	G	T	2806.77	.	AC=1;AF=0.500;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	0/1:246,145:0.37:391
chr15	86123833	rs4075256	T	C	957.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:141,51:0.27:192
chr15	86123924	rs4075255	C	T	633.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:129,40:0.24:169
chr15	86123988	rs4075254	G	A	858.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.311;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.47;ReadPosRankSum=-0.540;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:136,56:0.29:192
chr15	86124419	rs4843073	C	T	1496.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:130,75:0.37:205
chr15	86124483	rs4843074	C	G	1984.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:172,103:0.37:275
chr15	86124555	rs4843075	G	A	1775.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:167,96:0.37:263
chr15	86124946	rs7162168	T	C	2324.77	.	AC=1;AF=0.500;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	0/1:259,132:0.34:391
chr15	86124968	rs11633087	G	A	2637.77	.	AC=1;AF=0.500;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	0/1:261,136:0.34:397
chr15	86125031	rs7178065	G	A	2854.77	.	AC=1;AF=0.500;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	0/1:221,147:0.40:368
chr15	86129201	rs931082	T	A	530.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:44,25:0.36:69
chr15	86182512	rs56092539	A	G	89.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:19,6:0.24:25
chr15	86182856	rs35727345	C	CT	213.73	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:16,8:0.33:24
chr15	86189006	rs71468130	G	GTT	186.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.241;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=1.373;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.49;ReadPosRankSum=-0.649;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:22,12:0.35:34
chr15	86198561	rs1861856	G	C	1091.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:20,47:0.70:67
chr15	86199049	rs17635450	C	G	167.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:20,9:0.31:29
chr15	86212866	rs12904047	A	G	590.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:58,29:0.33:87
chr15	86213172	rs338523	A	G	242.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:28,12:0.30:40
chr15	86227952	rs2306225	A	G	663.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:44,35:0.44:79
chr15	86251500	rs16943484	T	C	440.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:11,16:0.59:27
chr15	86253768	rs8037947	T	A	5552.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr15	86253911	rs8038249	T	G	10236.77	.	AC=2;AF=1.00;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	1/1:0,390:1.00:390
chr15	86259233	rs71141478	C	CT	46.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.238;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=1.542;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.95;ReadPosRankSum=2.063;SOR=0.331;set=HC	GT:AD:AF:DP	0/1:38,11:0.22:49
chr15	86260700	rs3765096	C	T	1398.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:174,78:0.31:252
chr15	86278174	rs2241267	C	T	1223.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.60;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr15	86278309	rs2241268	G	A	804.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:62,44:0.42:106
chr15	86278479	rs16943741	A	G	597.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:5,26:0.84:31
chr15	86278770	rs11308004	AC	A	424.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.064;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=1.480;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.32;ReadPosRankSum=0.878;SOR=0.905;set=HC	GT:AD:AF:DP	0/1:82,46:0.36:128
chr15	86278771	rs66907883	C	A	39.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.363;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.31;ReadPosRankSum=0.000;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:107,21:0.16:128
chr15	86284342	rs16943792	C	T	2278.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:38,101:0.73:139
chr15	86284817	rs13511	T	C	1334.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:88,67:0.43:155
chr15	86287724	rs11629690	G	A	609.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:60,36:0.38:96
chr15	86311188	rs11637444	G	A	176.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:23,9:0.28:32
chr15	86311695	rs1978391	G	A	3356.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.280;ClippingRankSum=0.000;DB;DP=697;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.87;ReadPosRankSum=-3.425;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:492,197:0.29:689
chr15	86312681	rs11073537	G	A	3195.77	.	AC=1;AF=0.500;AN=2;DB;DP=487;set=Intersection	GT:AD:AF:DP	0/1:310,170:0.35:480
chr15	86313048	rs2614657	T	C	5693.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr15	86368835	rs4627292	A	G	177.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.868;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=1.740;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.47;ReadPosRankSum=-1.451;SOR=0.991;set=HC	GT:AD:AF:DP	0/1:11,10:0.48:21
chr15	86368898	rs4414449	G	A	302.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.973;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.65;ReadPosRankSum=1.127;SOR=0.871;set=HC	GT:AD:AF:DP	0/1:19,16:0.46:35
chr15	86368959	rs4577031	A	T	277.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.760;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.62;ReadPosRankSum=-1.415;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:6,13:0.68:19
chr15	86697596	rs7161846	G	C	1542.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:175,86:0.33:261
chr15	86768264	rs35578252	CT	C	291.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.727;ClippingRankSum=0.000;DB;DP=229;ExcessHet=3.0103;FS=0.865;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.791;QD=1.66;ReadPosRankSum=0.092;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:118,58:0.33:176
chr15	86800209	rs1353578	C	T	3834.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr15	86806029	rs1566088	C	T	7451.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr15	86807542	rs10520617	C	T	2916.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:84,124:0.60:208
chr15	86807761	rs10520618	A	G	1885.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:224,103:0.31:327
chr15	86807843	rs11857527	T	C	5250.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:97,230:0.70:327
chr15	86807884	rs11856833	A	C	4937.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:81,208:0.72:289
chr15	86809807	rs8041327	C	T	427.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr15	86814654	rs11852354	T	G	1631.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr15	86814866	rs11858435	A	G	6898.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr15	86940622	rs4362360	T	C	3551.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:71,157:0.69:228
chr15	86940673	rs1367647	C	T	3255.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:65,148:0.69:213
chr15	87089452	.	G	GT	57.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.069;ClippingRankSum=0.000;DP=42;ExcessHet=3.0103;FS=4.228;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=1.187;QD=1.99;ReadPosRankSum=-0.066;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:19,10:0.34:29
chr15	87097468	rs9788743	T	C	782.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:15,30:0.67:45
chr15	87099537	rs752270	T	C	2477.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:68,104:0.60:172
chr15	87217488	rs11853730	T	C	2871.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:74,128:0.63:202
chr15	87217613	rs8028043	A	G	3117.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr15	87217721	rs11856329	C	G	371.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:3,13:0.81:16
chr15	87531281	rs1006030	A	C	5361.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr15	87572209	rs116954466	C	T	1032.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:110,54:0.33:164
chr15	88423463	rs1560975	C	T	2779.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr15	88428702	rs2117655	C	A	205.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr15	88576185	rs2229910	G	C	1179.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:165,71:0.30:236
chr15	88679785	rs1863480	G	A	2978.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr15	88690736	.	CCTTCTT	C,CCTT	3036.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=189;set=Intersection	GT:AF:DP	1/2:0.23,0.77:81
chr15	89056040	rs13835	C	A	151.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:9,7:0.44:16
chr15	89071124	rs34611303	A	AAAC	459.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.244;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=1.448;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.38;ReadPosRankSum=-1.401;SOR=0.385;set=HC	GT:AD:AF:DP	0/1:34,15:0.31:49
chr15	89073752	.	G	A	315.77	.	AC=1;AF=0.500;AN=2;DP=44;set=Intersection	GT:AD:AF:DP	0/1:28,16:0.36:44
chr15	89155014	rs41276928	C	T	353.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:24,19:0.44:43
chr15	89169614	rs3743476	A	G	1047.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.265;ClippingRankSum=0.000;DB;DP=239;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.50;ReadPosRankSum=-0.633;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:171,62:0.27:233
chr15	89169858	rs8027765	A	G	3254.77	.	AC=1;AF=0.500;AN=2;DB;DP=549;set=Intersection	GT:AD:AF:DP	0/1:357,187:0.34:544
chr15	89172352	rs3826040	C	T	502.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:49,22:0.31:71
chr15	89172558	rs3743475	G	C	2907.77	.	AC=1;AF=0.500;AN=2;DB;DP=520;set=Intersection	GT:AD:AF:DP	0/1:348,163:0.32:511
chr15	89173136	rs3826039	A	C	119.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:12,6:0.33:18
chr15	89173657	rs3826038	A	T	236.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:24,14:0.37:38
chr15	89182596	rs3200942	A	G	692.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.042;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=6.642;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.82;ReadPosRankSum=0.322;SOR=0.252;set=HC	GT:AD:AF:DP	0/1:81,38:0.32:119
chr15	89193584	rs8041679	G	C	555.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:46,27:0.37:73
chr15	89195526	rs1137166	A	G	1287.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:104,60:0.37:164
chr15	89385151	rs2293087	T	G	5848.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr15	89386543	rs11324188	AG	A	5388.73	.	AC=2;AF=1.00;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.12;QD=31.33;SOR=1.101;set=HC	GT:AD:AF:DP	1/1:0,172:1.00:172
chr15	89390434	rs12911138	G	A	1105.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr15	89391160	rs2272023	C	A	4429.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr15	89392745	rs1568116	T	C	7635.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr15	89398105	rs2351491	C	T	9555.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:0,340:1.00:340
chr15	89398330	rs3743399	G	A	19798.77	.	AC=2;AF=1.00;AN=2;DB;DP=723;set=Intersection	GT:AD:AF:DP	1/1:0,719:1.00:719
chr15	89398605	rs938608	G	T	11108.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr15	89398631	rs938609	T	A	10259.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr15	89400339	rs2882676	A	C	3340.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr15	89401109	rs4932439	A	G	9050.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:1,323:1.00:324
chr15	89401615	rs3825994	T	G	7219.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:4,267:0.99:271
chr15	89402051	rs1042630	A	G	4366.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr15	89402239	rs1042631	T	C	12193.77	.	AC=2;AF=1.00;AN=2;DB;DP=466;set=Intersection	GT:AD:AF:DP	1/1:0,458:1.00:458
chr15	89402596	rs698621	T	G	14383.77	.	AC=2;AF=1.00;AN=2;DB;DP=561;set=Intersection	GT:AD:AF:DP	1/1:2,547:1.00:549
chr15	89403743	rs371902718	C	T	1041.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:98,58:0.37:156
chr15	89430506	rs3743395	C	T	2495.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:81,113:0.58:194
chr15	89436167	rs59440069	C	T	924.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:60,42:0.41:102
chr15	89436244	rs8024779	T	C	8768.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:2,327:0.99:329
chr15	89436295	rs8039131	G	A	5473.77	.	AC=1;AF=0.500;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	0/1:130,253:0.66:383
chr15	89436375	rs58786421	A	G	1023.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.272;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=1.242;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.45;ReadPosRankSum=-2.852;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:127,61:0.32:188
chr15	89442606	rs2280214	C	T	590.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:60,29:0.33:89
chr15	89444760	rs2015495	T	C	727.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr15	89449137	rs3743388	C	G	2981.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:71,132:0.65:203
chr15	89450546	rs1878327	C	T	10323.77	.	AC=2;AF=1.00;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	1/1:2,389:0.99:391
chr15	89450587	rs1878326	G	T	8047.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:2,306:0.99:308
chr15	89456306	rs35936125	C	G	109.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr15	89456356	rs3743387	G	C	176.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:19,11:0.37:30
chr15	89456544	rs4945	G	T	396.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:36,22:0.38:58
chr15	89731347	rs2239288	G	C	3253.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr15	89736558	rs6496562	T	C	7420.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr15	89754954	rs950541	G	A	1595.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr15	89758552	rs4932483	A	G	1611.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr15	89761664	rs3825991	C	A	2318.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr15	89804043	rs17803620	C	T	3263.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:119,157:0.57:276
chr15	89804111	rs16942918	G	A	2161.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:78,101:0.56:179
chr15	89805189	rs3217022	C	CTG	373.73	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:10,11:0.52:21
chr15	89806710	rs1981623	C	T	1742.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:71,85:0.54:156
chr15	89806721	rs1981624	G	A	1903.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:70,90:0.56:160
chr15	89811482	rs7497351	T	C	560.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:21,24:0.53:45
chr15	89811543	rs7496308	G	C	1244.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:26,49:0.65:75
chr15	89816541	rs72300014	TA	T	370.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.536;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=3.136;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.01;ReadPosRankSum=1.228;SOR=1.088;set=HC	GT:AD:AF:DP	0/1:38,36:0.49:74
chr15	89816742	rs34985075	TA	T	219	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.104;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=10.837;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.21;ReadPosRankSum=0.766;SOR=1.431;set=HC	GT:AD:AF:DP	0/1:15,27:0.64:42
chr15	89817689	rs11073853	G	C	507.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr15	89826496	rs9806604	C	T	3762.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:98,165:0.63:263
chr15	89836228	rs2283432	G	C	971.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:33,44:0.57:77
chr15	89838045	rs2283431	G	A	1005.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:21,41:0.66:62
chr15	89838236	rs7183618	G	A	7100.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr15	89844688	rs2159081	A	C	3477.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:63,145:0.70:208
chr15	89857698	rs16943011	T	G	1235.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:25,44:0.64:69
chr15	89857711	rs71464462	A	ATACAAG	2384.73	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:32,57:0.64:89
chr15	89858602	rs1138465	T	C	2934.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:54,139:0.72:193
chr15	89859932	rs3087377	A	AC	1114.73	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:7,36:0.84:43
chr15	89859994	rs3087374	C	A	1900.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:28,81:0.74:109
chr15	89860130	rs1801377	G	T	1561.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:125,87:0.41:212
chr15	89860786	rs2307438	A	C	2313.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:57,106:0.65:163
chr15	89862341	rs2302084	A	G	7685.77	.	AC=1;AF=0.500;AN=2;DB;DP=618;set=Intersection	GT:AD:AF:DP	0/1:249,364:0.59:613
chr15	89862366	rs2246900	T	C	8233.77	.	AC=1;AF=0.500;AN=2;DB;DP=591;set=Intersection	GT:AD:AF:DP	0/1:229,359:0.61:588
chr15	89863928	rs2307449	T	G	441.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:6,16:0.73:22
chr15	89864316	rs2307433	G	GCTAC	5934.73	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:72,146:0.67:218
chr15	89866954	rs2072266	A	G	353.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:17,16:0.48:33
chr15	89867154	rs2072267	A	G	4463.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:84,203:0.71:287
chr15	89871499	rs3176174	T	C	1547.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:43,63:0.59:106
chr15	89876236	rs2283430	C	A	2971.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:61,125:0.67:186
chr15	90023558	rs17807723	G	A	5175.77	.	AC=1;AF=0.500;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	0/1:144,241:0.63:385
chr15	90026491	.	A	T	945.77	.	AC=1;AF=0.500;AN=2;DP=51;set=Intersection	GT:AD:AF:DP	0/1:12,38:0.76:50
chr15	90029828	.	A	AGTGT	168.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.340;ClippingRankSum=0.000;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.42;MQRankSum=-0.929;QD=1.87;ReadPosRankSum=-2.576;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:74,16:0.18:90
chr15	90029830	.	A	AGTGTGAGTGT	151.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.852;ClippingRankSum=-0.000;DP=106;ExcessHet=3.0103;FS=2.463;MLEAC=1;MLEAF=0.500;MQ=62.60;MQRankSum=0.605;QD=2.33;ReadPosRankSum=0.263;SOR=1.206;set=HC	GT:AD:AF:DP	0/1:56,9:0.14:65
chr15	90118767	rs56144360	G	A	1387.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.361;ClippingRankSum=0.000;DB;DP=203;ExcessHet=3.0103;FS=2.048;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.94;ReadPosRankSum=-1.354;SOR=0.532;set=HC	GT:AD:AF:DP	0/1:123,77:0.39:200
chr15	90119614	rs11855211	G	C	953.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:10,42:0.81:52
chr15	90126121	rs10775247	C	T	5090.77	.	AC=1;AF=0.500;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	0/1:123,233:0.65:356
chr15	90128799	rs893724	T	A	845.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr15	90128910	rs893723	T	C	1629.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:165,87:0.35:252
chr15	90129188	rs1540504	T	C	3513.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr15	90129227	rs1540503	A	C	2096.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr15	90135196	rs8041127	A	G	3113.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr15	90135432	rs34494298	A	G	4856.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr15	90138670	rs8042146	C	T	2595.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr15	90144851	rs4932233	T	C	3148.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr15	90144894	rs4932234	T	C	4103.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr15	90144944	rs4244876	G	A	6624.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr15	90159575	rs56036125	T	C	1342.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:134,70:0.34:204
chr15	90161355	rs2289486	G	A	7481.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr15	90168108	rs894157	C	T	1514.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:179,81:0.31:260
chr15	90168693	rs1866928	T	A	1593.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:137,80:0.37:217
chr15	90169331	rs55653159	A	G	1531.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:213,94:0.31:307
chr15	90170237	rs3743372	C	T	1414.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:86,70:0.45:156
chr15	90172133	rs12914042	C	G	1778.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:43,73:0.63:116
chr15	90172419	rs143394914	GGGGTGGGGGCTGTGGGCTGGGT	G	765.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.138;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=16.244;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=0.676;QD=28.36;ReadPosRankSum=-1.467;SOR=1.542;set=HC	GT:AD:AF:DP	0/1:7,20:0.74:27
chr15	90172600	rs74251725	G	A	707.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:32,31:0.49:63
chr15	90172834	rs72750748	T	G	3773.77	.	AC=1;AF=0.500;AN=2;DB;DP=568;set=Intersection	GT:AD:AF:DP	0/1:354,211:0.37:565
chr15	90173734	rs35820949	C	CAG	1282.73	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:22,34:0.61:56
chr15	90174789	rs9672286	C	T	2576.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:53,114:0.68:167
chr15	90174824	rs12900805	C	T	3169.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:77,140:0.65:217
chr15	90174955	rs9672296	C	T	2093.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:63,94:0.60:157
chr15	90176073	rs3803530	C	A	1134.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:46,47:0.51:93
chr15	90176251	rs147787370	G	GAGGGAGGGAGGGAGGA	1226.73	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:38,27:0.42:65
chr15	90176432	rs3803531	T	G	4321.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr15	90177157	rs894156	C	T	2135.77	.	AC=1;AF=0.500;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	0/1:225,127:0.36:352
chr15	90177159	rs11633151	C	T	4516.77	.	AC=1;AF=0.500;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	0/1:126,216:0.63:342
chr15	90188514	rs894159	A	G	6241.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:1,222:1.00:223
chr15	90190048	rs1110060	A	G	1928.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:74,94:0.56:168
chr15	90191827	rs8037349	T	C	4026.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr15	90192905	rs4932240	T	C	4087.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr15	90195765	rs11630003	AA	GG	12963.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;JOINED;set=Intersection	GT:AD:AF:DP	1/1:2,292:0.99:294
chr15	90195967	rs8179066	C	G	8489.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr15	90196008	rs8179065	C	T	1985.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:183,104:0.36:287
chr15	90196166	rs62021460	A	C	1305.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:35,62:0.64:97
chr15	90208310	rs1052700	A	T	393.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:27,18:0.40:45
chr15	90210257	rs2304796	G	A	7197.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.783;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=34.28;ReadPosRankSum=-1.169;SOR=0.732;set=HC	GT:AD:AF:DP	1/1:2,208:0.99:210
chr15	90210257	.	GACAGCA	AACAGCA,AACAGCG	1511	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.46;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=5;MMLQ=27;MQ=60.0;NF=69,28;NR=70,28;PP=1511,612;QD=11.1206562054;SC=TGGTTGAGGAGACAGCAGGGG;SbPval=0.53;Source=Platypus;TC=142;TCF=70;TCR=72;TR=139,56;WE=90210271;WS=90210247;set=Platypus	GT:AF:DP	0/1:0.98:142
chr15	90210263	rs2304795	A	G	1610.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.183;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.78;ReadPosRankSum=0.488;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:120,87:0.42:207
chr15	90211047	rs894162	A	T	2691.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr15	90213134	rs2304794	T	A	1997.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr15	90213229	rs6496589	G	C	5207.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr15	90214948	rs1077903	C	A	1754.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:1,60:0.98:61
chr15	90226947	rs7169981	C	A	5721.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:1,204:1.00:205
chr15	90245174	rs4287542	T	A	1714.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr15	90245253	rs4316730	C	T	671.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr15	90245298	rs4306477	G	C	288.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr15	90246138	rs150085588	G	A	816.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:16,34:0.68:50
chr15	90246336	rs16974175	A	G	9145.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:0,340:1.00:340
chr15	90248819	rs17238056	A	T	1921.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:1,74:0.99:75
chr15	90255099	rs8036614	T	C	1675.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr15	90260145	rs7163367	T	A	2145.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr15	90270567	rs3743117	T	C	1930.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr15	90273070	rs12148067	A	G	1353.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:29,61:0.68:90
chr15	90274639	rs5814401	T	TG	5854.73	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr15	90293701	rs2305442	G	A	95.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:16,7:0.30:23
chr15	90293776	rs2305441	A	C	1735.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr15	90293794	rs2305440	G	C	992.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:23,27:0.54:50
chr15	90293806	rs2305439	C	A	1011.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:24,28:0.54:52
chr15	90294281	rs28368490	A	C	632.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.848;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=1.013;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.17;ReadPosRankSum=1.516;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:49,20:0.29:69
chr15	90294289	rs28377352	T	G	605.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.250;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.91;ReadPosRankSum=2.072;SOR=0.830;set=HC	GT:AD:AF:DP	0/1:49,19:0.28:68
chr15	90294296	.	G	GCGGGGCTCGGCA	2966	.	AC=2;AF=1.00;AN=2;BRF=0.39;FR=1.0000;HP=2;HapScore=1;MGOF=1;MMLQ=24;MQ=60.0;NF=2;NR=11;PP=2966;QD=20;SC=GCCTGGCCGCGCGGGGCTCGC;SbPval=0.61;Source=Platypus;TC=32;TCF=5;TCR=27;TR=13;WE=90294323;WS=90294271;set=Platypus	GT:AD:AF:DP	1/1:19,13:0.41:32
chr15	90294304	.	C	CG	2431.73	.	AC=2;AF=1.00;AN=2;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.66;SOR=0.960;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr15	90294306	.	C	G	1321	.	AC=2;AF=1.00;AN=2;BRF=0.39;FR=1.0000;HP=1;HapScore=1;MGOF=1;MMLQ=24;MQ=60.0;NF=26;NR=36;PP=1321;QD=21.8672776217;SC=GCGGGGCTCGCCACGGGGCTG;SbPval=0.55;Source=Platypus;TC=62;TCF=26;TCR=36;TR=62;WE=90294323;WS=90294271;set=Platypus	GT:AD:AF:DP	1/1:0,62:1.00:62
chr15	90294306	.	C	CACGGGGCTCGG	2670.73	.	AC=2;AF=1.00;AN=2;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.69;SOR=1.009;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr15	90308026	rs35308090	G	T	273.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr15	90308061	rs34284515	T	G	436.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.26;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr15	90308110	rs34936212	A	G	566.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.64;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr15	90308166	rs72754547	A	C	599.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.08;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr15	90308193	rs199847621	AG	A	170.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.081;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.13;ReadPosRankSum=0.041;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:5,16:0.76:21
chr15	90308231	rs62023459	A	T	591.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr15	90308253	rs62024160	G	A	575.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr15	90308305	rs62024161	T	C	176.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr15	90320119	rs75049807	G	A	2233.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:56,85:0.60:141
chr15	90320134	rs199821487	AGGGCAGGGGCAG	A	6305.73	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr15	90320179	.	G	A	1408.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.536;ClippingRankSum=0.000;DP=186;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=63.13;MQRankSum=-0.168;QD=7.70;ReadPosRankSum=1.598;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:117,66:0.36:183
chr15	90328551	rs10584	G	C	5646.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr15	90328774	rs71464487	A	AAC	5458.73	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr15	90333616	rs8192299	T	C	1818.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr15	90333654	rs8192298	A	T	2772.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr15	90333980	rs1992250	A	C	551.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr15	90334240	rs25654	A	G	6940.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:6,265:0.98:271
chr15	90334345	rs7168329	C	G	3591.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:1,130:0.99:131
chr15	90334415	rs7169161	A	G	1348.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr15	90335379	rs8179197	G	C	7360.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:1,268:1.00:269
chr15	90335534	rs25652	G	A	2017.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.744;ClippingRankSum=0.000;DB;DP=462;ExcessHet=3.0103;FS=1.911;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.45;ReadPosRankSum=-2.743;SOR=0.868;set=HC	GT:AD:AF:DP	0/1:318,135:0.30:453
chr15	90335788	rs25651	C	T	6260.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:1,231:1.00:232
chr15	90336373	rs16943605	T	C	5392.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr15	90340719	rs893615	G	A	4787.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.10;QD=45.17;SOR=1.819;set=HC	GT:AD:AF:DP	1/1:0,106:1.00:106
chr15	90340725	rs3934	A	C	4918.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.09;QD=43.53;SOR=1.630;set=HC	GT:AD:AF:DP	1/1:0,113:1.00:113
chr15	90346861	rs2305443	C	T	1781.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.165;ClippingRankSum=0.000;DB;DP=376;ExcessHet=3.0103;FS=0.869;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.80;ReadPosRankSum=-1.015;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:265,106:0.29:371
chr15	90348223	rs117683789	G	A	850.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:41,34:0.45:75
chr15	90349558	rs25653	C	T	2236.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:216,118:0.35:334
chr15	90378933	rs5814404	TA	T	59.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.221;ClippingRankSum=-0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.98;ReadPosRankSum=-1.891;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:4,8:0.67:12
chr15	90393808	rs4932252	G	C	683.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:24,31:0.56:55
chr15	90393949	rs11435035	C	CT	707.74	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:12,44:0.79:56
chr15	90414642	rs3759831	C	G	2854.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr15	90420673	rs12440156	G	A	4287.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr15	90437301	rs3784388	C	T	1327.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:196,80:0.29:276
chr15	90454140	rs112174927	G	A	2430.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:66,104:0.61:170
chr15	90455940	rs1256836	G	C	1884.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr15	90616617	rs2277556	T	C	739.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:79,41:0.34:120
chr15	90617539	rs6496620	C	T	2269.77	.	AC=1;AF=0.500;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	0/1:218,125:0.36:343
chr15	90623052	rs2970357	T	C	390.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:53,23:0.30:76
chr15	90627616	rs60147683	T	C	2802.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:60,131:0.69:191
chr15	90634941	rs10852126	A	G	2799.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:65,116:0.64:181
chr15	90744960	rs11547964	G	A	300.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:32,16:0.33:48
chr15	90766754	rs908048	A	G	1313.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr15	90768156	rs1040083	A	G	4467.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr15	90768959	rs908044	A	C	2874.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:68,131:0.66:199
chr15	90771750	rs3751655	T	G	4299.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:117,184:0.61:301
chr15	90775643	rs4451921	G	A	3251.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:100,147:0.60:247
chr15	90776984	rs8025610	G	C	1306.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.431;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=6.190;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.33;ReadPosRankSum=0.335;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:44,62:0.58:106
chr15	90784053	rs12901778	A	T	536.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:22,21:0.49:43
chr15	90784207	rs7166441	A	G	8015.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chr15	90784250	rs7171194	T	C	4644.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:106,207:0.66:313
chr15	90784930	rs10152994	C	A	4488.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:108,196:0.64:304
chr15	90785060	rs10153004	C	T	6267.77	.	AC=1;AF=0.500;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	0/1:122,287:0.70:409
chr15	90794757	rs4357917	T	G	6187.77	.	AC=1;AF=0.500;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	0/1:125,276:0.69:401
chr15	90798809	rs117271813	T	A	550.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:15,22:0.59:37
chr15	90801059	rs55674131	A	T	717.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:13,27:0.68:40
chr15	90802227	rs67188155	G	T	2082.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:58,94:0.62:152
chr15	90805084	rs12592600	A	G	591.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:10,22:0.69:32
chr15	90809633	rs9635390	G	A	4499.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:84,202:0.71:286
chr15	90818400	rs4533265	A	T	1272.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:52,61:0.54:113
chr15	90902293	rs10548073	AT	A	100.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.472;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=5.618;MLEAC=1;MLEAF=0.500;MQ=59.70;MQRankSum=-1.260;QD=2.46;ReadPosRankSum=-0.281;SOR=0.175;set=HC	GT:AD:AF:DP	0/1:23,18:0.44:41
chr15	90902336	rs11630434	C	T	376.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:9,16:0.64:25
chr15	90903311	rs2589957	A	G	3264.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:81,142:0.64:223
chr15	90903502	rs11854320	G	A	2807.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:88,129:0.59:217
chr15	90905980	rs71461870	TACACACACAC	T	471.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:5,15:0.75:20
chr15	90984724	.	G	GT	94.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.002;ClippingRankSum=0.000;DP=344;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.29;ReadPosRankSum=0.551;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:275,54:0.16:329
chr15	91040725	rs2301832	A	T	3054.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr15	91043192	rs72311245	ATGTTTTGTTT	A	3428.73	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr15	91083353	rs8033595	G	A	9300.77	.	AC=2;AF=1.00;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	1/1:0,355:1.00:355
chr15	91141810	rs7180867	A	C	934.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr15	91147512	rs1104880	A	G	5561.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr15	91181567	rs6496717	C	T	1488.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr15	91294897	rs7183841	T	C	858.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr15	91312313	rs17273206	G	A	7555.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr15	91312823	rs3815003	T	C	1839.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr15	91337479	rs2227933	G	A	3766.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:1,145:0.99:146
chr15	91337623	rs3214113	AT	A	489.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.29;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr15	91341599	rs17273842	T	G	1075.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr15	91346923	rs2227934	C	A	2478.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr15	91354505	rs1063147	C	T	2481.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr15	91358271	rs10685387	G	GGAA	4108.73	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr15	91419432	rs11372849	T	TC	3993.73	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:1,123:0.99:124
chr15	91420940	rs2071410	C	G	1021.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:77,55:0.42:132
chr15	91420973	rs1573643	T	C	2755.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr15	91421283	rs1573644	T	C	1385.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr15	91422543	rs8039305	T	C	3292.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr15	91423543	rs6224	G	T	412.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:46,22:0.32:68
chr15	91424574	rs6226	G	C	21683.77	.	AC=2;AF=1.00;AN=2;DB;DP=809;set=Intersection	GT:AD:AF:DP	1/1:0,804:1.00:804
chr15	91425232	rs6227	C	T	919.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr15	91428290	rs11539637	C	T	1431.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:29,60:0.67:89
chr15	91428521	rs11330240	CT	C	3559.73	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:198,112:0.36:310
chr15	91428589	rs7183988	T	G	4885.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:111,212:0.66:323
chr15	91428636	rs7177338	G	A	4909.77	.	AC=1;AF=0.500;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	0/1:120,236:0.66:356
chr15	91428955	rs1894400	C	T	45.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.485;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=2.830;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.91;ReadPosRankSum=-0.039;SOR=0.160;set=HC	GT:AD:AF:DP	0/1:19,5:0.21:24
chr15	91430406	rs72755383	C	G	9733.77	.	AC=1;AF=0.500;AN=2;DB;DP=661;set=Intersection	GT:AD:AF:DP	0/1:222,434:0.66:656
chr15	91430436	rs2071383	T	C	17227.77	.	AC=2;AF=1.00;AN=2;DB;DP=633;set=Intersection	GT:AD:AF:DP	1/1:0,629:1.00:629
chr15	91437388	rs2521501	A	T	4461.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr15	91453186	rs55689110	A	C	333.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:12,15:0.56:27
chr15	91483531	rs17593423	C	T	1492.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:39,70:0.64:109
chr15	91524841	rs7172758	G	T	12916.77	.	AC=2;AF=1.00;AN=2;DB;DP=484;set=Intersection	GT:AD:AF:DP	1/1:0,472:1.00:472
chr15	91544539	rs35353020	CA	C	223.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.253;ClippingRankSum=0.000;DB;DP=246;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=1.06;ReadPosRankSum=0.864;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:153,58:0.27:211
chr15	91557449	.	C	CA	80.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.634;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=12.979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.88;ReadPosRankSum=0.377;SOR=0.016;set=HC	GT:AD:AF:DP	0/1:17,11:0.39:28
chr15	91810011	rs11629714	C	T	475.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:50,23:0.32:73
chr15	91810997	rs56175742	G	A	42.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.482;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=2.133;MLEAC=1;MLEAF=0.500;MQ=60.36;MQRankSum=2.043;QD=1.47;ReadPosRankSum=-0.123;SOR=0.245;set=HC	GT:AD:AF:DP	0/1:23,6:0.21:29
chr15	91825027	rs1117388	C	T	636.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:79,37:0.32:116
chr15	91825123	rs1117387	A	T	266.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:20,13:0.39:33
chr15	91827264	rs2301664	C	T	513.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:92,35:0.28:127
chr15	91827534	rs7169561	T	A	578.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:4,23:0.85:27
chr15	92459187	rs4077721	T	C	1959.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr15	92638193	rs2286355	G	A	1721.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:165,95:0.37:260
chr15	92638326	.	GCCTCT	G	808.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.273;ClippingRankSum=0.000;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.55;ReadPosRankSum=-0.619;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:46,24:0.34:70
chr15	92638331	.	T	TGAG	811.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.167;ClippingRankSum=0.000;DP=69;ExcessHet=3.0103;FS=1.067;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.94;ReadPosRankSum=-0.796;SOR=0.880;set=HC	GT:AD:AF:DP	0/1:44,24:0.35:68
chr15	92638332	.	GT	G	1265	.	AC=1;AF=0.500;AN=2;BRF=0.26;FR=0.5000;HP=2;HapScore=1;MGOF=4;MMLQ=28;MQ=60.0;NF=0;NR=11;PP=1265;QD=118.909090909;SC=CCCTGCCTCTGTAGCTGGGGC;SbPval=1.0;Source=Platypus;TC=44;TCF=4;TCR=40;TR=11;WE=92638340;WS=92638317;set=Platypus	GT:AD:AF:DP	0/1:33,11:0.25:44
chr15	92638333	.	T	TG	814.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.031;ClippingRankSum=0.000;DP=68;ExcessHet=3.0103;FS=1.130;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.16;ReadPosRankSum=-0.441;SOR=0.963;set=HC	GT:AD:AF:DP	0/1:45,22:0.33:67
chr15	92647645	rs1517618	G	C	3451.77	.	AC=1;AF=0.500;AN=2;DB;DP=519;set=Intersection	GT:AD:AF:DP	0/1:326,184:0.36:510
chr15	92647834	rs917355	A	G	356.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:23,17:0.42:40
chr15	92663630	rs6496893	A	G	2108.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:59,94:0.61:153
chr15	92937268	rs3743365	G	T	7721.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.42;SOR=2.038;set=HC	GT:AD:AF:DP	1/1:0,170:1.00:170
chr15	92937276	rs3743364	C	T	8172.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.79;SOR=1.901;set=HC	GT:AD:AF:DP	1/1:0,191:1.00:191
chr15	92977670	rs2242113	T	G	548.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:68,29:0.30:97
chr15	93007302	.	C	CTT	207.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.278;ClippingRankSum=0.000;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=-0.710;QD=5.07;ReadPosRankSum=1.687;SOR=0.883;set=HC	GT:AD:AF:DP	0/1:21,20:0.49:41
chr15	93016398	rs71412551	A	G	835.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:60,37:0.38:97
chr15	93043545	rs7178722	T	G	4699.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr15	93198671	rs501381	A	G	5858.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr15	93198678	rs68056278	TTGGAGC	T	3098.73	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:2,113:0.98:115
chr15	93198784	rs2438194	A	G	1218.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr15	93306348	rs8032507	C	T	399.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.753;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=3.400;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.19;ReadPosRankSum=1.263;SOR=0.337;set=HC	GT:AD:AF:DP	0/1:52,25:0.32:77
chr15	93306367	rs10636472	G	GA	118.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.210;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=1.351;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.64;ReadPosRankSum=-0.415;SOR=0.454;set=HC	GT:AD:AF:DP	0/1:31,14:0.31:45
chr15	93306459	rs56099640	G	A	276.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:6,13:0.68:19
chr15	93306602	rs11634113	TG	CA	859.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=56.31;QD=45.25;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr15	93306644	rs28493166	G	A	161.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:20,10:0.33:30
chr15	93306681	rs12594947	G	A	331.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.816;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=7.944;MLEAC=1;MLEAF=0.500;MQ=58.90;MQRankSum=-3.086;QD=7.37;ReadPosRankSum=-0.120;SOR=0.441;set=HC	GT:AD:AF:DP	0/1:34,11:0.24:45
chr15	93306688	rs12910258	G	A	368.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.599;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=7.613;MLEAC=1;MLEAF=0.500;MQ=58.97;MQRankSum=-2.877;QD=7.68;ReadPosRankSum=-1.229;SOR=0.395;set=HC	GT:AD:AF:DP	0/1:35,13:0.27:48
chr15	93487854	rs1320819	G	C	112.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:17,6:0.26:23
chr15	93488926	.	A	AT	70.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.662;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=1.987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.21;ReadPosRankSum=-0.967;SOR=1.347;set=HC	GT:AD:AF:DP	0/1:23,9:0.28:32
chr15	93496874	rs1371390	C	T	652.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:29,27:0.48:56
chr15	93510603	rs4777755	A	G	230.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.336;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.16;ReadPosRankSum=0.515;SOR=0.769;set=HC	GT:AD:AF:DP	0/1:87,20:0.19:107
chr15	93510828	rs144172255	GT	G	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.505;ClippingRankSum=-0.000;DB;DP=28;ExcessHet=3.0103;FS=6.803;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.55;ReadPosRankSum=-0.440;SOR=3.126;set=HC	GT:AD:AF:DP	0/1:8,6:0.43:14
chr15	93515439	rs62023144	G	A	1218.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:28,50:0.64:78
chr15	93521604	rs11074121	A	G	1026.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.440;ClippingRankSum=0.000;DB;DP=211;ExcessHet=3.0103;FS=4.432;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.01;ReadPosRankSum=1.573;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:141,64:0.31:205
chr15	93521651	rs11074122	T	G	682.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.271;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=1.689;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.69;ReadPosRankSum=-0.307;SOR=0.484;set=HC	GT:AD:AF:DP	0/1:82,38:0.32:120
chr15	93522312	rs2272461	G	A	156.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.692;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.66;ReadPosRankSum=-0.520;SOR=0.485;set=HC	GT:AD:AF:DP	0/1:44,15:0.25:59
chr15	93543956	rs12591124	G	A	337.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:27,17:0.39:44
chr15	93552330	rs12915582	C	T	871.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:101,51:0.34:152
chr15	93563164	.	C	CAA	209.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.654;ClippingRankSum=0.000;DP=82;ExcessHet=3.0103;FS=5.347;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.28;ReadPosRankSum=-1.227;SOR=1.718;set=HC	GT:AD:AF:DP	0/1:43,21:0.33:64
chr15	93563661	rs964034	G	C	1045.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr15	93567527	rs12905032	CC	TT	1075.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;JOINED;set=Intersection	GT:AD:AF:DP	0/1:62,31:0.33:93
chr15	93567864	rs12906163	A	C	10336.77	.	AC=2;AF=1.00;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	1/1:1,402:1.00:403
chr15	93588289	rs4778078	G	A	1771.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:143,91:0.39:234
chr15	93588336	rs4238485	A	C	10495.77	.	AC=2;AF=1.00;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	1/1:0,379:1.00:379
chr15	93595855	rs1997382	T	C	1466.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr15	93844616	rs12914371	T	A	515.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr15	93844762	rs12909691	C	T	4642.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr15	93844836	rs34239935	G	A	12478.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.57;SOR=0.862;set=HC	GT:AD:AF:DP	1/1:0,280:1.00:280
chr15	93844843	rs12914719	T	A	12536.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.30;SOR=0.789;set=HC	GT:AD:AF:DP	1/1:0,283:1.00:283
chr15	94304132	rs12905790	C	T	1091.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:79,54:0.41:133
chr15	94304189	rs12910750	T	C	2368.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:213,118:0.36:331
chr15	94410061	rs150315641	A	C	319.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:12,14:0.54:26
chr15	94410296	rs12908831	A	G	469.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:66,29:0.31:95
chr15	94882509	rs4984382	C	T	45.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.852;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=2.128;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.29;ReadPosRankSum=-0.054;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:15,5:0.25:20
chr15	94883599	rs10152496	T	C	1522.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr15	94884108	rs8025851	G	C	3288.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr15	94942497	rs2289009	T	C	708.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr15	94945324	rs6497203	G	A	1802.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr15	94945704	rs7180682	A	G	2631.77	.	AC=1;AF=0.500;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	0/1:239,134:0.36:373
chr15	94945719	rs7178698	G	T	11555.77	.	AC=2;AF=1.00;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	1/1:0,417:1.00:417
chr15	94986276	.	CT	C	399.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.245;ClippingRankSum=0.000;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.344;QD=3.92;ReadPosRankSum=-1.512;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:54,48:0.47:102
chr15	97940810	rs4076597	T	C	1087.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:26,43:0.62:69
chr15	97940925	rs7166971	G	C	2300.77	.	AC=1;AF=0.500;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	0/1:239,131:0.35:370
chr15	98301845	rs2048115	C	T	1980.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr15	98302002	rs143322276	TAAC	T	759.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr15	98504100	rs4965046	G	C	761.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:26,36:0.58:62
chr15	98504326	rs12101554	A	G	1432.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:30,66:0.69:96
chr15	98512431	rs61747226	C	T	1814.77	.	AC=1;AF=0.500;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	0/1:239,107:0.31:346
chr15	98512622	rs5814833	CT	C	1333.73	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:54,84:0.61:138
chr15	98513845	rs2130882	T	C	1048.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:33,47:0.59:80
chr15	98514282	rs62023730	A	G	4026.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:77,186:0.71:263
chr15	98514489	rs3803385	A	G	3534.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:76,144:0.65:220
chr15	98995052	rs56374714	G	GT	7845.73	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr15	98995081	rs12101356	A	G	7623.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr15	99192754	.	CTTTTTTTTT	C	2902.73	.	AC=2;AF=1.00;AN=2;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.62;QD=34.15;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:1,84:0.99:85
chr15	99456253	rs2272037	T	C	4014.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr15	99456553	rs951715	G	A	762.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:24,33:0.58:57
chr15	99465274	rs28637929	C	T	170.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:30,11:0.27:41
chr15	99465473	rs3743262	C	T	3679.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:91,167:0.65:258
chr15	99467934	rs1464430	A	C	720.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:32,35:0.52:67
chr15	99472734	rs4486868	T	C	1267.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:175,77:0.31:252
chr15	99477911	rs2715449	T	G	1814.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr15	99478225	rs2229765	G	A	503.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:81,32:0.28:113
chr15	99478493	rs10400894	T	C	796.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr15	99478505	rs34389972	A	AC	1172.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr15	99478713	rs2293117	T	C	2139.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:212,121:0.36:333
chr15	99500256	rs2593053	G	A	3070.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:75,134:0.64:209
chr15	99511793	rs1521484	C	G	3151.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:108,141:0.57:249
chr15	99511804	rs5814919	A	AC	4327.73	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:104,136:0.57:240
chr15	99511873	rs2715423	G	A	1434.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:116,72:0.38:188
chr15	99514431	rs199848298	GGGGGGGGGT	G	58.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.328;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=4.868;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.26;ReadPosRankSum=-0.136;SOR=0.132;set=HC	GT:AD:AF:DP	0/1:11,7:0.39:18
chr15	99514432	rs201352743	GGGGGGGGT	G	65.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.502;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.65;ReadPosRankSum=-0.136;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:11,7:0.39:18
chr15	99544429	rs2593051	G	A	5450.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:1,200:1.00:201
chr15	99646107	rs60530833	A	AG	1769.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr15	99653666	rs2305446	C	T	305.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:34,18:0.35:52
chr15	99653800	rs2305445	T	C	1951.77	.	AC=1;AF=0.500;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:210,110:0.34:320
chr15	99667524	rs260090	G	C	1987.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.953;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=0.658;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.10;ReadPosRankSum=0.923;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:47,94:0.67:141
chr15	99670265	rs3743244	C	T	4491.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:135,193:0.59:328
chr15	99670400	rs5030692	A	C	6329.77	.	AC=1;AF=0.500;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	0/1:144,275:0.66:419
chr15	99670518	rs1670227	T	C	5908.77	.	AC=1;AF=0.500;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	0/1:162,257:0.61:419
chr15	99670989	rs3743248	T	C	10432.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:0,376:1.00:376
chr15	99671492	rs5030695	A	G	2820.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:54,120:0.69:174
chr15	99671760	rs260087	T	C	6107.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr15	99671795	rs5030699	C	T	3647.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:70,154:0.69:224
chr15	99672162	.	A	AT	9564.73	.	AC=1;AF=0.500;AN=2;DP=454;set=Intersection	GT:AD:AF:DP	0/1:151,297:0.66:448
chr15	99672445	rs142629386	G	A	5083.77	.	AC=1;AF=0.500;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	0/1:132,225:0.63:357
chr15	99672599	rs7167599	G	C	5545.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:126,232:0.65:358
chr15	99672722	rs2292288	A	G	2751.77	.	AC=1;AF=0.500;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	0/1:244,141:0.37:385
chr15	99678145	rs260089	G	A	1377.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:49,63:0.56:112
chr15	99679489	rs34077294	GAGAT	G	2351.73	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:33,61:0.65:94
chr15	99679655	rs181987	C	A	4180.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:102,183:0.64:285
chr15	99679830	rs260118	A	G	4514.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:113,202:0.64:315
chr15	99701857	rs3803472	A	G	1210.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:139,69:0.33:208
chr15	99715352	rs2602016	A	G	7418.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr15	99798934	rs7162949	G	A	1130.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:114,61:0.35:175
chr15	99799750	rs1976589	T	C	7554.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr15	99826041	rs35874478	A	G	354.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:16,17:0.52:33
chr15	99901749	rs3817147	C	G	927.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.732;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=2.293;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.27;ReadPosRankSum=0.548;SOR=0.393;set=HC	GT:AD:AF:DP	0/1:21,44:0.68:65
chr15	100230908	rs325385	T	C	243.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr15	100243487	rs34131461	GT	G	517.73	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:93,38:0.29:131
chr15	100243672	rs3730281	G	A	2173.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:52,96:0.65:148
chr15	100246834	rs325409	T	G	291.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:28,13:0.32:41
chr15	100246936	rs325408	T	C	1387.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.473;ClippingRankSum=0.000;DB;DP=295;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.70;ReadPosRankSum=0.074;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:209,86:0.29:295
chr15	100246942	rs325407	G	A	10019.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,318:1.00:318
chr15	100251015	rs325403	C	G	3190.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:107,146:0.58:253
chr15	100252709	rs3138597	CCAGCAG	C	4024.73	.	AC=1;AF=0.500;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	0/1:106,178:0.63:284
chr15	100252738	.	AGCAGCC	A	2992	.	AC=1;AF=0.500;AN=2;FR=0.5000;HP=1;HapScore=2;MGOF=15;MMLQ=24;MQ=60.23;NF=33;NR=67;PP=2992;QD=20;SC=CAGCAGCAGCAGCAGCCGCCG;SbPval=0.76;Source=Platypus;TC=207;TCF=79;TCR=128;TR=100;WE=100252751;WS=100252728;set=Platypus	GT:AD:AF:DP	0/1:107,100:0.48:207
chr15	100252892	rs34851361	A	G	1974.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:179,104:0.37:283
chr15	100256618	rs325380	A	C	3900.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:115,172:0.60:287
chr15	100269309	rs6598263	T	G	4324.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr15	100269680	rs2061007	G	C	6321.77	.	AC=1;AF=0.500;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	0/1:162,265:0.62:427
chr15	100269796	rs6598264	A	G	7692.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr15	100271253	rs12185079	C	T	297.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:54,21:0.28:75
chr15	100272337	rs73466515	A	G	46.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.714;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.60;ReadPosRankSum=-1.821;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:9,4:0.31:13
chr15	100330535	rs79797081	G	T	90.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:9,6:0.40:15
chr15	100330730	rs79063960	C	T	262.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.804;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=1.193;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.41;ReadPosRankSum=1.425;SOR=0.509;set=HC	GT:AD:AF:DP	0/1:24,17:0.41:41
chr15	100330786	rs76506736	T	C	45.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:8,3:0.27:11
chr15	100331253	rs1060457	G	A	4310.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:2,159:0.99:161
chr15	100331282	rs1060456	C	T	1183.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:131,65:0.33:196
chr15	100331752	rs746071	C	A	993.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:89,52:0.37:141
chr15	100331800	rs2004045	G	A	1047.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:97,53:0.35:150
chr15	100331819	rs2958994	A	G	4068.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:1,150:0.99:151
chr15	100331961	rs1809156	A	G	1650.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:177,95:0.35:272
chr15	100332215	rs76943657	G	A	1789.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:177,91:0.34:268
chr15	100332743	rs8039516	A	G	1559.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.937;ClippingRankSum=0.000;DB;DP=373;ExcessHet=3.0103;FS=1.628;MLEAC=1;MLEAF=0.500;MQ=58.10;MQRankSum=2.766;QD=4.36;ReadPosRankSum=-0.025;SOR=0.829;set=HC	GT:AD:AF:DP	0/1:259,99:0.28:358
chr15	100332799	rs11639102	A	C	966.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.045;ClippingRankSum=0.000;DB;DP=413;ExcessHet=3.0103;FS=0.842;MLEAC=1;MLEAF=0.500;MQ=57.73;MQRankSum=-17.091;QD=2.35;ReadPosRankSum=5.535;SOR=0.831;set=HC	GT:AD:AF:DP	0/1:361,50:0.12:411
chr15	100332807	rs11633999	C	T	1056.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.855;ClippingRankSum=0.000;DB;DP=419;ExcessHet=3.0103;FS=1.722;MLEAC=1;MLEAF=0.500;MQ=57.33;MQRankSum=-16.460;QD=2.53;ReadPosRankSum=4.174;SOR=0.876;set=HC	GT:AD:AF:DP	0/1:363,54:0.13:417
chr15	100332877	rs6598274	T	C	987.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.891;ClippingRankSum=0.000;DB;DP=300;ExcessHet=3.0103;FS=3.865;MLEAC=1;MLEAF=0.500;MQ=53.94;MQRankSum=3.400;QD=3.30;ReadPosRankSum=-1.986;SOR=0.468;set=HC	GT:AD:AF:DP	0/1:226,73:0.24:299
chr15	100332919	rs2603217	T	C	4080.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr15	100332989	rs62040187	C	A	1402.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.600;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=43.59;MQRankSum=-1.704;QD=18.22;ReadPosRankSum=0.901;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:25,52:0.68:77
chr15	100333075	rs11634114	C	T	648.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.077;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=50.06;MQRankSum=-1.250;QD=6.55;ReadPosRankSum=1.411;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:63,36:0.36:99
chr15	100339897	.	T	C	835	.	AC=1;AF=0.500;AN=2;BRF=0.49;FR=0.5000;HP=1;HapScore=2;MGOF=19;MMLQ=24;MQ=55.31;NF=23;NR=31;PP=835;QD=16.1068743064;SC=GTGTTGATGTTGCCGATGATG;SbPval=0.49;Source=Platypus;TC=96;TCF=40;TCR=56;TR=54;WE=100339905;WS=100339887;set=Platypus	GT:AD:AF:DP	1/0:42,54:0.56:96
chr15	100339938	.	C	T	557	.	AC=1;AF=0.500;AN=2;BRF=0.57;FR=0.5000;HP=2;HapScore=2;MGOF=26;MMLQ=28;MQ=52.45;NF=14;NR=21;PP=557;QD=16.9077489299;SC=GTGGTGCATGCGCAGCATCTC;SbPval=0.6;Source=Platypus;TC=77;TCF=32;TCR=45;TR=35;WE=100339946;WS=100339928;set=Platypus	GT:AD:AF:DP	0/1:42,35:0.45:77
chr15	100339960	.	G	A	285	.	AC=1;AF=0.500;AN=2;BRF=0.61;FR=0.5000;HP=2;HapScore=2;MGOF=31;MMLQ=24;MQ=51.04;NF=11;NR=14;PP=285;QD=12.7908485019;SC=TCGCGCCGCTGTGCCTGCTCC;SbPval=0.64;Source=Platypus;TC=65;TCF=30;TCR=35;TR=25;WE=100339968;WS=100339950;set=Platypus	GT:AD:AF:DP	1/0:40,25:0.38:65
chr15	100347024	.	A	G	54.28	.	AC=2;AF=1.00;AN=2;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.00;QD=18.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr15	100353107	rs8037668	T	C	511.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:7,22:0.76:29
chr15	100514561	rs2581340	G	C	2037.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:1,64:0.98:65
chr15	100514614	rs2573652	T	C	4951.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:4,171:0.98:175
chr15	100516472	rs11634977	G	A	1241.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr15	100533218	rs7175995	C	T	1352.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:29,52:0.64:81
chr15	100537494	rs12900132	C	T	2862.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:44,120:0.73:164
chr15	100603776	rs6598297	T	A	6327.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr15	100672237	rs12907333	T	G	8690.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr15	100693032	rs10664668	C	CTT	1904.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.373;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=3.153;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=0.718;QD=15.61;ReadPosRankSum=0.623;SOR=0.400;set=HC	GT:AD:AF:DP	0/1:34,88:0.72:122
chr15	100695347	rs8024690	T	C	2726.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:58,120:0.67:178
chr15	100794172	rs7172834	T	A	1622.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr15	100794363	rs4369638	C	T	6180.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr15	100794474	rs80342915	C	T	516.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:38,25:0.40:63
chr15	100801698	rs4965613	G	A	3120.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr15	100801965	rs6598316	G	T	1331.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr15	100802495	rs4965296	G	A	3901.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.85;SOR=1.356;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr15	100802499	rs4965297	A	G	4024.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.82;SOR=1.203;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr15	100821426	rs7496614	G	A	2456.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr15	100821467	rs7496640	G	A	2938.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr15	100821576	rs7496668	G	A	2403.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr15	100821647	rs7497712	T	C	1826.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr15	100871329	rs11639041	G	A	5086.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:3,171:0.98:174
chr15	100881994	rs189240104	G	A	794.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:53,39:0.42:92
chr15	100889496	rs2289584	T	G	4748.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr15	100942843	rs1023782	G	T	232.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:11,10:0.48:21
chr15	100942962	rs2439928	T	C	3056.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr15	100996038	rs12595207	C	T	8331.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr15	101009474	rs34108242	A	T	602.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:11,23:0.68:34
chr15	101009530	rs12909732	G	A	1009.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:33,47:0.59:80
chr15	101013123	rs1566775	G	A	1860.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:180,100:0.36:280
chr15	101019529	rs2654574	C	T	1970.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr15	101019819	rs2587763	G	T	109.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:9,6:0.40:15
chr15	101041896	rs1354332	T	C	4254.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:85,188:0.69:273
chr15	101042097	rs147295392	CG	C	1597.73	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:123,55:0.31:178
chr15	101044032	rs72759164	G	A	259.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.457;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.82;MQRankSum=0.566;QD=2.79;ReadPosRankSum=1.274;SOR=0.640;set=HC	GT:AD:AF:DP	0/1:72,21:0.23:93
chr15	101109358	rs28438569	A	G	240.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:16,10:0.38:26
chr15	101109677	rs8451	C	A	2727.77	.	AC=1;AF=0.500;AN=2;DB;DP=448;set=Intersection	GT:AD:AF:DP	0/1:297,146:0.33:443
chr15	101109794	rs12157	C	G	1855.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:201,95:0.32:296
chr15	101109818	rs12460	G	A	1465.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:173,77:0.31:250
chr15	101109893	rs6598356	C	A	1083.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:122,56:0.31:178
chr15	101110265	rs2411836	T	A	322.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:49,19:0.28:68
chr15	101110356	rs2411838	T	C	143.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.493;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=1.585;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.96;ReadPosRankSum=-0.276;SOR=0.321;set=HC	GT:AD:AF:DP	0/1:19,10:0.34:29
chr15	101110372	rs3084804	AAC	A	128.73	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:12,5:0.29:17
chr15	101112342	rs1493652	T	C	1603.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr15	101113748	rs2062816	C	T	148.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.361;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.38;ReadPosRankSum=0.227;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:24,10:0.29:34
chr15	101113862	rs12719734	C	T	4339.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr15	101113950	rs12592868	A	G	1717.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.398;ClippingRankSum=0.000;DB;DP=329;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.37;ReadPosRankSum=1.138;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:220,100:0.31:320
chr15	101114418	rs8039437	G	A	1249.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:91,58:0.39:149
chr15	101114482	rs34231390	AAC	A	1101.73	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:23,30:0.57:53
chr15	101115448	rs4965678	C	A	440.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr15	101120963	rs11247226	T	C	552.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.358;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=1.537;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.13;ReadPosRankSum=-1.950;SOR=0.553;set=HC	GT:AD:AF:DP	0/1:97,37:0.28:134
chr15	101152745	rs4965683	A	C	1806.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr15	101425703	rs4646656	T	C	180.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:27,12:0.31:39
chr15	101432549	.	C	T	494.77	.	AC=1;AF=0.500;AN=2;DP=62;set=Intersection	GT:AD:AF:DP	0/1:40,22:0.35:62
chr15	101436307	rs4646669	C	T	319.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:53,21:0.28:74
chr15	101440988	rs4646674	A	C	816.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:107,45:0.30:152
chr15	101441055	rs4646675	T	C	327.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:26,17:0.40:43
chr15	101445900	rs3825924	G	A	210.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:12,10:0.45:22
chr15	101447588	rs4646684	A	G	545.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:45,27:0.38:72
chr15	101448571	rs4646686	T	A	1103.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:139,60:0.30:199
chr15	101464915	rs11630691	T	C	2432.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:76,115:0.60:191
chr15	101527096	rs1551466	G	C	1200.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:106,61:0.37:167
chr15	101527635	rs7176015	G	A	2424.77	.	AC=1;AF=0.500;AN=2;DB;DP=532;set=Intersection	GT:AD:AF:DP	0/1:375,150:0.29:525
chr15	101529118	rs4357923	C	T	510.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:49,25:0.34:74
chr15	101529413	rs57713827	T	TCTC	568.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:59,18:0.23:77
chr15	101529414	rs57020487	A	T	577.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:62,19:0.23:81
chr15	101550858	rs12595297	G	T	7718.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.812;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=3.103;MLEAC=2;MLEAF=1.000;MQ=60.11;MQRankSum=0.155;QD=40.63;ReadPosRankSum=1.131;SOR=0.308;set=HC	GT:AD:AF:DP	1/1:1,189:0.99:190
chr15	101550861	.	CTT	C,CT	2116.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.525;ClippingRankSum=0.000;DP=205;ExcessHet=3.0103;FS=11.315;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.21;MQRankSum=0.839;QD=12.10;ReadPosRankSum=1.655;SOR=0.951;set=HC	GT:AD:AF:DP	1/2:25,50,100:0.29,0.57:175
chr15	101555399	rs2034809	G	A	942.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:129,53:0.29:182
chr15	101561980	rs146724273	CGTGTGTGTGTGT	C,CGTGTGT	1561.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=70;MQ=61.53;set=Intersection	GT:AF:DP	1/2:0.77,0.21:52
chr15	101562793	rs11247253	G	A	1992.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:26,81:0.76:107
chr15	101566118	rs4427776	C	T	2003.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:36,85:0.70:121
chr15	101567547	rs41319544	G	C	1626.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:189,97:0.34:286
chr15	101569467	rs11639307	T	C	2275.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:64,106:0.62:170
chr15	101591784	rs13329684	C	T	395.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:32,21:0.40:53
chr15	101591834	rs13329662	G	A	798.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:80,42:0.34:122
chr15	101591857	rs10710683	CG	C	4739.73	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr15	101593641	rs11631875	G	A	2723.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.934;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.05;ReadPosRankSum=-0.942;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:60,121:0.67:181
chr15	101598200	rs11857803	G	A	4744.77	.	AC=1;AF=0.500;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	0/1:122,222:0.65:344
chr15	101598314	rs11853661	C	T	2582.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:59,115:0.66:174
chr15	101601367	rs148929418	C	CACTT	5506.73	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:65,136:0.68:201
chr15	101606082	rs35787282	G	A	7727.77	.	AC=1;AF=0.500;AN=2;DB;DP=504;set=Intersection	GT:AD:AF:DP	0/1:162,336:0.67:498
chr15	101607513	rs2925201	T	C	5917.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.52;SOR=1.105;set=HC	GT:AD:AF:DP	1/1:0,182:1.00:182
chr15	101607513	.	TTGCAGT	CTGCAGC,CTGCAGT	1280	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.48;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=3;MMLQ=28;MQ=60.0;NF=12,46;NR=20,73;PP=286,1280;QD=10.6083710894;SC=GTCTACATGGTTGCAGTGATG;SbPval=0.61;Source=Platypus;TC=119;TCF=46;TCR=73;TR=32,119;WE=101607527;WS=101607503;set=Platypus	GT:AF:DP	0/1:0.27:119
chr15	101607519	rs111609923	T	C	862.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.518;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=2.163;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.23;ReadPosRankSum=2.109;SOR=0.506;set=HC	GT:AD:AF:DP	0/1:112,53:0.32:165
chr15	101607626	.	ATGTGTGTGTGTG	A	112	.	AC=1;AF=0.500;AN=2;BRF=0.29;FR=0.5000;HP=2;HapScore=2;MGOF=34;MMLQ=23;MQ=60.0;NF=0;NR=8;PP=112;QD=14.375;SC=CTCAGTTCAAATGTGTGTGTG;SbPval=1.0;Source=Platypus;TC=14;TCF=1;TCR=13;TR=8;WE=101607647;WS=101607616;set=Platypus	GT:AD:AF:DP	1/0:6,8:0.57:14
chr15	101717680	rs8024370	G	T	7995.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:1,297:1.00:298
chr15	101717888	rs62621399	C	T	10999.77	.	AC=2;AF=1.00;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	1/1:4,404:0.99:408
chr15	101871941	rs34318939	G	GA	6127.73	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr15	101872018	rs117271366	G	A	1775.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:49,76:0.61:125
chr15	101872306	rs2073592	G	A	372.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:42,18:0.30:60
chr15	101887767	rs2949	C	T	354.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:5,16:0.76:21
chr15	101887794	rs1030	T	C	1035.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr15	101888081	rs875293	C	T	604.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:15,25:0.62:40
chr15	101910511	rs2073591	A	C	4262.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:127,194:0.60:321
chr15	101910550	rs20543	G	A	3830.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:146,175:0.55:321
chr15	101929632	rs141220261	ATT	A	1100.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.040;ClippingRankSum=0.000;DB;DP=223;ExcessHet=3.0103;FS=2.887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.03;ReadPosRankSum=-0.605;SOR=0.927;set=HC	GT:AD:AF:DP	0/1:162,57:0.26:219
chr15	101929825	rs6598460	G	C	333.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:50,18:0.26:68
chr15	101970308	rs2643354	G	A	659.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.464;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.07;ReadPosRankSum=-2.294;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:118,44:0.27:162
chr15	101970323	rs3825896	G	T	501.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.991;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.41;ReadPosRankSum=-0.901;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:110,37:0.25:147
chr15	101970336	rs3825895	T	C	485.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.478;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=0.713;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.47;ReadPosRankSum=-1.907;SOR=0.590;set=HC	GT:AD:AF:DP	0/1:102,38:0.27:140
chr15	101971388	rs2643356	T	C	325.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:29,14:0.33:43
chr15	101972055	rs12902244	T	C	360.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:12,14:0.54:26
chr15	102003442	rs12907397	C	T	719.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:83,41:0.33:124
chr15	102029475	rs201114579	C	CG	141.73	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:9,6:0.40:15
chr15	102029519	rs186935141	C	A	241.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:27,15:0.36:42
chr15	102029597	rs1135910	C	G	516.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:63,33:0.34:96
chr15	102029685	rs199543153	G	GGC	1290.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr15	102173789	rs601741	G	C	4011.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:144,186:0.56:330
chr15	102191869	rs672314	G	A	2261.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:54,97:0.64:151
chr15	102192034	rs507903	A	G	4945.77	.	AC=1;AF=0.500;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	0/1:139,226:0.62:365
chr15	102192540	rs675436	T	G	14008.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.563;ClippingRankSum=0.000;DB;DP=947;ExcessHet=3.0103;FS=1.873;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.01;ReadPosRankSum=1.364;SOR=0.556;set=HC	GT:AD:AF:DP	0/1:301,632:0.68:933
chr15	102192548	rs2939587	A	C	33630.77	.	AC=2;AF=1.00;AN=2;DB;DP=867;set=Intersection	GT:AD:AF:DP	1/1:0,853:1.00:853
chr15	102196186	rs572705	C	T	6417.77	.	AC=1;AF=0.500;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	0/1:139,291:0.68:430
chr15	102211654	rs606511	T	C	559.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:12,24:0.67:36
chr15	102224341	rs12901450	G	A	1423.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:190,83:0.30:273
chr15	102251993	rs11247320	G	A	386.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.065;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=4.352;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.52;ReadPosRankSum=-1.088;SOR=0.356;set=HC	GT:AD:AF:DP	0/1:82,28:0.25:110
chr15	102264304	rs1143138	G	C	1314.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:91,67:0.42:158
chr15	102284542	rs71154345	AG	A	777.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.453;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=3.712;MLEAC=1;MLEAF=0.500;MQ=58.35;MQRankSum=1.525;QD=4.18;ReadPosRankSum=1.118;SOR=0.406;set=HC	GT:AD:AF:DP	0/1:147,39:0.21:186
chr15	102284597	rs62027633	A	G	1813.77	.	AC=1;AF=0.500;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	0/1:277,117:0.30:394
chr15	102284675	rs182931332	A	G	2390.77	.	AC=1;AF=0.500;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	0/1:293,140:0.32:433
chr15	102287886	rs375110977	G	A	442.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.656;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=4.688;MLEAC=1;MLEAF=0.500;MQ=46.12;MQRankSum=-0.946;QD=11.97;ReadPosRankSum=0.496;SOR=0.163;set=HC	GT:AD:AF:DP	0/1:19,18:0.49:37
chr15	102287989	.	A	AT	1113.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.833;ClippingRankSum=0.000;DP=238;ExcessHet=3.0103;FS=8.278;MLEAC=1;MLEAF=0.500;MQ=47.33;MQRankSum=-5.494;QD=4.86;ReadPosRankSum=2.458;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:146,83:0.36:229
chr15	102288016	rs201217805	C	T	1196.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.592;ClippingRankSum=0.000;DB;DP=220;ExcessHet=3.0103;FS=4.923;MLEAC=1;MLEAF=0.500;MQ=47.29;MQRankSum=-4.255;QD=5.44;ReadPosRankSum=-1.503;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:144,76:0.35:220
chr15	102291954	rs28521777	C	T	2832.77	.	AC=1;AF=0.500;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	0/1:210,144:0.41:354
chr15	102291955	rs397212	G	A	570.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.632;ClippingRankSum=0.000;DB;DP=350;ExcessHet=3.0103;FS=0.546;MLEAC=1;MLEAF=0.500;MQ=57.27;MQRankSum=0.455;QD=1.66;ReadPosRankSum=-2.563;SOR=0.618;set=HC	GT:AD:AF:DP	0/1:285,59:0.17:344
chr15	102312095	rs199873857	G	T	166.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.245;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.84;MQRankSum=-1.846;QD=0.86;ReadPosRankSum=-0.180;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:162,32:0.16:194
chr15	102312240	rs59860046	GA	G	2710.73	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:130,99:0.43:229
chr15	102312315	rs57638732	GA	G	6028.73	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr15	102313716	rs352719	A	G	1166.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:21,52:0.71:73
chr15	102313869	rs72761685	G	A	1572.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:48,73:0.60:121
chr15	102358451	rs142759394	G	A	2067.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.812;ClippingRankSum=0.000;DB;DP=418;ExcessHet=3.0103;FS=0.600;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.08;ReadPosRankSum=0.744;SOR=0.805;set=HC	GT:AD:AF:DP	0/1:289,118:0.29:407
chr16	97610	rs798675	G	A	7369.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:2,277:0.99:279
chr16	103449	rs11376822	C	CG	5581.73	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr16	103517	rs183360	A	C	7055.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr16	103923	rs2562145	C	G	1086.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:93,58:0.38:151
chr16	105320	rs216596	A	G	298.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.312;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=2.207;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.95;ReadPosRankSum=0.376;SOR=0.250;set=HC	GT:AD:AF:DP	0/1:16,9:0.36:25
chr16	105325	rs2858042	G	A	289.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.531;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.35;ReadPosRankSum=1.061;SOR=0.332;set=HC	GT:AD:AF:DP	0/1:19,9:0.32:28
chr16	105444	rs2541594	C	T	961.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:115,55:0.32:170
chr16	106777	rs216597	G	C	342.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:28,15:0.35:43
chr16	106952	rs11435836	G	GC	904.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr16	107275	rs1045001	T	G	220.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:24,12:0.33:36
chr16	108585	rs216598	T	C	2123.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:178,118:0.40:296
chr16	108796	rs34941405	T	TG	3187.73	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr16	109671	rs216599	A	G	1593.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:226,97:0.30:323
chr16	110165	rs216600	T	C	1608.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:123,84:0.41:207
chr16	110925	rs2562146	T	C	254.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:37,14:0.27:51
chr16	112151	rs216602	A	G	209.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr16	112513	rs216604	T	C	607.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.228;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=0.754;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.00;ReadPosRankSum=0.654;SOR=0.830;set=HC	GT:AD:AF:DP	0/1:114,38:0.25:152
chr16	112593	rs149482835	G	A	1946.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.142;ClippingRankSum=0.000;DB;DP=415;ExcessHet=3.0103;FS=0.573;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.74;ReadPosRankSum=-0.063;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:292,119:0.29:411
chr16	113883	rs10659183	G	GCC	11143.73	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr16	113886	rs11285099	GC	G	11069.73	.	AC=2;AF=1.00;AN=2;DB;DP=243;MQ=60.09;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr16	113970	rs2157115	T	C	1368.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:134,77:0.36:211
chr16	114535	rs2562147	A	G	459.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:44,24:0.35:68
chr16	115041	rs2288490	C	T	1971.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:240,117:0.33:357
chr16	115072	rs6600227	A	C	1754.77	.	AC=1;AF=0.500;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	0/1:234,107:0.31:341
chr16	128179	rs2562162	T	C	1589.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr16	136888	rs743725	T	C	2484.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr16	138772	rs57321480	A	AG	8626.73	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr16	142825	rs2541618	T	C	1373.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr16	148352	rs2541616	G	A	4252.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr16	160668	rs808892	T	C	2482.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr16	203118	.	G	GACAGTGGGGAGGGGACAGTGGGGAGAGGACAGTAAGGAGGGGACCATGGGGAGGAC	415.73	.	AC=2;AF=1.00;AN=2;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.79;QD=69.29;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr16	203144	rs2947790	A	G	179.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.47;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr16	204203	.	GA	G	528	.	AC=2;AF=1.00;AN=2;BRF=0.25;FR=1.0000;HP=1;HapScore=3;MGOF=73;MMLQ=24;MQ=41.14;NF=7;NR=0;PP=528;QD=79.0;SC=TCGCGGGGCGGATGCGGGGGT;SbPval=1.0;Source=Platypus;TC=7;TCF=7;TCR=0;TR=7;WE=204225;WS=204193;set=Platypus	GT:AD:AF:DP	1/1:0,7:1.00:7
chr16	204205	.	T	G	206	.	AC=2;AF=1.00;AN=2;BRF=0.25;FR=1.0000;HP=1;HapScore=3;MGOF=73;MMLQ=24;MQ=45.54;NF=7;NR=0;PP=206;QD=34.3958875067;SC=GCGGGGCGGATGCGGGGGTCG;SbPval=1.0;Source=Platypus;TC=7;TCF=7;TCR=0;TR=7;WE=204225;WS=204193;set=Platypus	GT:AD:AF:DP	1/1:0,7:1.00:7
chr16	216190	rs11431675	C	CG	1256.73	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:97,52:0.35:149
chr16	223706	rs2541640	A	G	5977.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr16	223735	rs2685121	A	G	3343.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr16	277458	rs1203974	G	A	462.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr16	284833	rs7202423	T	G	1795.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr16	322934	rs9940585	C	T	4978.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr16	324030	rs112344350	T	TG	679.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:13,27:0.68:40
chr16	324052	rs2685126	A	G	2625.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr16	325683	rs200964940	C	CG	322.75	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr16	325695	rs201791993	A	AG	386.74	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr16	325732	rs202190256	A	AG	593.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr16	325771	rs111978133	GT	G	1005.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr16	325943	.	A	AG	44.70	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.35;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr16	330661	.	C	CG	172.87	.	AC=2;AF=1.00;AN=2;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.57;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr16	330678	rs368146102	G	A	107.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.76;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr16	332558	rs61572786	CG	C	1117.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.214;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.40;ReadPosRankSum=-0.366;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:2,42:0.95:44
chr16	333138	rs28365941	T	C	721.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:10,28:0.74:38
chr16	336660	rs11647490	G	A	14168.77	.	AC=2;AF=1.00;AN=2;DB;DP=524;set=Intersection	GT:AD:AF:DP	1/1:0,518:1.00:518
chr16	341120	rs55886111	C	T	2561.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:2,96:0.98:98
chr16	359953	rs2301522	A	G	3381.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:2,122:0.98:124
chr16	396264	rs1805105	A	G	11017.77	.	AC=2;AF=1.00;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	1/1:0,419:1.00:419
chr16	417281	rs62032959	G	A	9397.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.867;ClippingRankSum=0.000;DB;DP=212;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=45.18;ReadPosRankSum=-0.325;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:2,206:0.99:208
chr16	417289	rs62033860	C	T	10091.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.698;ClippingRankSum=0.000;DB;DP=252;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=40.86;ReadPosRankSum=0.214;SOR=1.083;set=HC	GT:AD:AF:DP	1/1:2,245:0.99:247
chr16	418429	rs11642334	A	G	8229.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:2,297:0.99:299
chr16	418462	rs11640313	C	G	8623.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr16	419092	rs3830160	A	G	3869.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr16	419283	rs11434190	A	AG	4208.73	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr16	422516	rs62030794	T	G	5475.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr16	424277	rs3743887	G	A	4943.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:2,185:0.99:187
chr16	424420	rs3743888	C	G	997.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr16	425298	rs11648905	G	T	4911.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr16	426432	rs2071915	T	C	6112.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr16	426476	rs2071916	T	C	5362.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr16	427010	rs62030796	C	T	9188.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.94;SOR=1.621;set=HC	GT:AD:AF:DP	1/1:0,200:1.00:200
chr16	427013	rs763140	G	C	9270.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.32;SOR=1.489;set=HC	GT:AD:AF:DP	1/1:0,214:1.00:214
chr16	427349	rs763142	C	A	1303.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr16	427479	rs11248931	T	C	3417.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr16	427516	rs11649031	T	C	4187.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr16	427657	rs11641693	G	A	4471.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr16	427784	rs11641742	G	A	6405.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr16	427820	rs12922073	C	T	5098.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr16	427866	rs12933709	T	C	3327.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr16	427925	rs61261356	T	C	1353.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr16	431890	.	AGCCTCTGCCGCCTCC	A	53.70	.	AC=2;AF=1.00;AN=2;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr16	447103	.	CGGGGCGGCGGGGGGCTCCGG	C	85.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.150;ClippingRankSum=-0.000;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=65.19;MQRankSum=0.674;QD=21.43;ReadPosRankSum=1.150;SOR=0.916;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr16	447123	.	G	GAA	98.25	.	AC=2;AF=1.00;ALERT;AN=2;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=66.83;QD=32.75;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr16	447348	.	A	T	54.28	.	AC=2;AF=1.00;AN=2;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr16	447416	rs7190051	A	G	84.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.01;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr16	447740	.	G	GGTGGGGGT	544	.	AC=1;AF=0.500;AN=2;BRF=0.53;FR=0.5000;HP=5;HapScore=2;MGOF=129;MMLQ=26;MQ=50.8;NF=11;NR=0;PP=544;QD=51.3636363636;SC=GGGTGGGGGTGGGGGGAGCCG;SbPval=1.0;Source=Platypus;TC=16;TCF=16;TCR=0;TR=11;WE=447748;WS=447739;set=Platypus	GT:AD:AF:DP	0/1:5,11:0.69:16
chr16	447767	.	G	C	509	.	AC=1;AF=0.500;AN=2;BRF=0.48;FR=0.5000;HP=2;HapScore=2;MGOF=83;MMLQ=24;MQ=59.3;NF=20;NR=3;PP=509;QD=23.6422266325;SC=TGGGGCGTTCGCTGAAGGCCA;SbPval=0.78;Source=Platypus;TC=39;TCF=32;TCR=7;TR=23;WE=447775;WS=447757;set=Platypus	GT:AD:AF:DP	1/0:16,23:0.59:39
chr16	447925	rs74784460	C	T	3454.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:122,157:0.56:279
chr16	448172	rs431324	A	G	3906.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:89,165:0.65:254
chr16	449162	rs7185254	T	C	728.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:70,38:0.35:108
chr16	449178	rs2363759	T	G	682.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:67,38:0.36:105
chr16	449345	rs763151	G	C	2767.77	.	AC=1;AF=0.500;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	0/1:264,146:0.36:410
chr16	449554	rs2071914	G	C	2289.77	.	AC=1;AF=0.500;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	0/1:322,136:0.30:458
chr16	449659	rs14293	G	A	2037.77	.	AC=1;AF=0.500;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	0/1:284,123:0.30:407
chr16	449980	rs28394836	C	T	548.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:54,27:0.33:81
chr16	450165	rs448063	T	C	9831.77	.	AC=2;AF=1.00;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	1/1:0,364:1.00:364
chr16	450309	rs5841	C	T	495.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:65,29:0.31:94
chr16	452159	rs112988705	CCTTT	C	1043.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.14;SOR=3.098;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr16	452179	.	C	CT	187.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.906;ClippingRankSum=0.000;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.42;MQRankSum=-0.204;QD=13.41;ReadPosRankSum=1.529;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:1,13:0.93:14
chr16	455646	rs873477	A	G	4251.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr16	456239	rs11391097	G	GC	6046.73	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr16	456291	rs11391098	G	GC	9173.73	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr16	460578	rs11315123	CT	C	645.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr16	461697	rs4984667	C	T	2468.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr16	476096	rs1883371	A	G	216.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr16	532248	rs9935319	A	G	1473.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr16	532279	rs12917958	C	G	2512.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr16	538711	rs3079539	C	CTT	496.90	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.369;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=2.973;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.80;ReadPosRankSum=1.781;SOR=2.004;set=HC	GT:AD:AF:DP	0/1:8,28:0.78:36
chr16	539088	rs3830847	T	TAA	5693.73	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr16	539093	rs74390230	G	C	5572.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr16	601632	rs3213574	T	C	6299.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr16	601870	rs28417967	G	A	1139.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:127,64:0.34:191
chr16	601892	rs28422497	T	C	993.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:109,54:0.33:163
chr16	602046	rs7196821	T	C	487.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:51,28:0.35:79
chr16	679412	rs9929621	C	T	1440.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr16	679814	rs12447874	T	C	12406.77	.	AC=2;AF=1.00;AN=2;DB;DP=469;set=Intersection	GT:AD:AF:DP	1/1:0,454:1.00:454
chr16	699456	rs12934086	A	G	177.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:10,9:0.47:19
chr16	700644	rs13337278	G	C	5770.77	.	AC=1;AF=0.500;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	0/1:108,256:0.70:364
chr16	701578	rs35244470	C	T	895.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:18,38:0.68:56
chr16	703721	rs9936879	A	C	4870.77	.	AC=1;AF=0.500;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	0/1:115,210:0.65:325
chr16	705360	rs3803697	T	C	3775.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:104,177:0.63:281
chr16	705795	rs12599798	C	T	9338.77	.	AC=1;AF=0.500;AN=2;DB;DP=594;set=Intersection	GT:AD:AF:DP	0/1:183,402:0.69:585
chr16	705844	rs8051645	T	C	7880.77	.	AC=1;AF=0.500;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	0/1:132,324:0.71:456
chr16	706010	rs35582942	C	CA	1366.73	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:16,43:0.73:59
chr16	706067	rs9932866	G	A	644.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:9,24:0.73:33
chr16	706267	rs9933039	G	A	218.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:4,10:0.71:14
chr16	707034	rs6600228	A	C	1518.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:42,64:0.60:106
chr16	707295	rs6600229	T	G	1753.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr16	708419	rs7188691	T	C	2710.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:44,112:0.72:156
chr16	709001	rs4984906	C	A	6959.77	.	AC=1;AF=0.500;AN=2;DB;DP=516;set=Intersection	GT:AD:AF:DP	0/1:188,312:0.62:500
chr16	709152	rs7184667	G	A	17791.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.071;ClippingRankSum=0.000;DB;DP=665;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.67;ReadPosRankSum=-1.127;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:201,442:0.69:643
chr16	709157	rs7194532	T	C	17774.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.615;ClippingRankSum=0.000;DB;DP=669;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.43;ReadPosRankSum=-1.283;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:202,446:0.69:648
chr16	710255	rs3752496	C	T	1150.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:19,50:0.72:69
chr16	710808	rs73487454	G	A	846.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:19,34:0.64:53
chr16	711016	rs76032962	G	C	138.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.878;ClippingRankSum=-0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.68;MQRankSum=-0.000;QD=11.56;ReadPosRankSum=0.611;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:4,8:0.67:12
chr16	711326	rs9932282	G	C	1819.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:42,73:0.63:115
chr16	711545	rs11284424	CG	C	6379.73	.	AC=1;AF=0.500;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	0/1:101,249:0.71:350
chr16	711582	rs8062685	C	G	6370.77	.	AC=1;AF=0.500;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	0/1:121,267:0.69:388
chr16	711712	rs3177415	C	T	7481.77	.	AC=1;AF=0.500;AN=2;DB;DP=490;set=Intersection	GT:AD:AF:DP	0/1:153,330:0.68:483
chr16	711905	rs2301426	A	G	6083.77	.	AC=1;AF=0.500;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	0/1:143,279:0.66:422
chr16	712127	rs10903018	A	G	3391.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr16	712867	rs1057835	A	G	4907.77	.	AC=1;AF=0.500;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	0/1:123,224:0.65:347
chr16	713204	rs9929652	A	G	1597.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.239;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.59;ReadPosRankSum=0.827;SOR=0.540;set=HC	GT:AD:AF:DP	0/1:14,40:0.74:54
chr16	715847	rs3752494	A	G	1096.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.663;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=7.403;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.90;ReadPosRankSum=0.387;SOR=1.528;set=HC	GT:AD:AF:DP	0/1:21,48:0.70:69
chr16	715990	rs7190775	G	A	2513.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:52,110:0.68:162
chr16	716273	rs11866949	T	C	6938.77	.	AC=1;AF=0.500;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	0/1:135,311:0.70:446
chr16	716287	rs9934288	C	A	7729.77	.	AC=1;AF=0.500;AN=2;DB;DP=500;set=Intersection	GT:AD:AF:DP	0/1:149,344:0.70:493
chr16	716428	rs3743909	G	A	5722.77	.	AC=1;AF=0.500;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	0/1:118,242:0.67:360
chr16	717057	rs7189028	T	C	2417.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:36,101:0.74:137
chr16	717523	rs3752493	G	T	5233.77	.	AC=1;AF=0.500;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	0/1:117,237:0.67:354
chr16	717544	rs3752492	G	C	4750.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:106,217:0.67:323
chr16	717828	rs3752490	G	T	2141.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:46,95:0.67:141
chr16	718514	rs7204542	C	G	9307.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	1/1:0,351:1.00:351
chr16	719592	rs11557858	G	A	3967.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:99,178:0.64:277
chr16	720071	rs62032482	G	A	656.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:12,28:0.70:40
chr16	720152	rs3752487	T	C	2705.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:50,109:0.69:159
chr16	720960	rs3743912	C	T	4802.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:64,205:0.76:269
chr16	722331	rs3177338	C	T	4224.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:96,189:0.66:285
chr16	722548	rs1128550	A	G	4343.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:106,184:0.63:290
chr16	723647	rs1045716	C	G	730.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:17,30:0.64:47
chr16	771181	rs56225914	C	G	242.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:10,12:0.55:22
chr16	771234	rs55708282	C	T	419.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.213;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.49;ReadPosRankSum=-0.966;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:18,22:0.55:40
chr16	771286	rs11540049	C	T	754.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:21,37:0.64:58
chr16	771750	rs3752555	T	C	3560.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:104,155:0.60:259
chr16	772061	rs55956436	C	T	4260.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:68,189:0.74:257
chr16	772141	rs11867009	G	C	3915.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:98,170:0.63:268
chr16	772842	rs12599130	T	C	5957.77	.	AC=1;AF=0.500;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	0/1:119,253:0.68:372
chr16	773291	rs35843452	GC	G	2992.73	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:57,119:0.68:176
chr16	773313	rs58842228	G	GC	3438.73	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:61,142:0.70:203
chr16	773341	rs4984920	G	A	4471.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:85,202:0.70:287
chr16	773367	rs55787204	G	T	5773.77	.	AC=1;AF=0.500;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	0/1:108,258:0.70:366
chr16	774520	rs4984921	C	T	4143.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:89,178:0.67:267
chr16	774692	rs2071950	A	G	5620.77	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:92,245:0.73:337
chr16	775947	rs12446058	G	C	5721.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.882;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=1.784;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.61;ReadPosRankSum=-0.541;SOR=0.600;set=HC	GT:AD:AF:DP	0/1:68,147:0.68:215
chr16	775954	rs12448311	CC	AA	5601.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.497;ClippingRankSum=0.000;DB;DP=205;ExcessHet=3.0103;FS=0.545;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.59;ReadPosRankSum=0.703;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:67,136:0.67:203
chr16	776239	rs62032517	C	T	8942.77	.	AC=1;AF=0.500;AN=2;DB;DP=536;set=Intersection	GT:AD:AF:DP	0/1:144,386:0.73:530
chr16	777627	rs7188886	C	T	5051.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:96,222:0.70:318
chr16	779689	rs1054788	G	C	1394.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:25,57:0.70:82
chr16	782397	rs12443803	C	T	7391.77	.	AC=1;AF=0.500;AN=2;DB;DP=513;set=Intersection	GT:AD:AF:DP	0/1:169,333:0.66:502
chr16	784920	rs9932304	A	G	1334.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:38,54:0.59:92
chr16	787827	rs12449156	A	C	510.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:15,22:0.59:37
chr16	812539	rs1076675	C	T	645.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:71,32:0.31:103
chr16	813775	.	A	C	340	.	AC=1;AF=0.500;AN=2;BRF=0.53;FR=0.5000;HP=5;HapScore=3;MGOF=97;MMLQ=24;MQ=59.7;NF=4;NR=1;PP=340;QD=74.9542425094;SC=CCCATCCCCCAGCATCCCCTC;SbPval=0.01;Source=Platypus;TC=27;TCF=5;TCR=22;TR=5;WE=813791;WS=813765;set=Platypus	GT:AD:AF:DP	0/1:22,5:0.19:27
chr16	813775	.	A	AGCATCCCATCCCCCGTCCCCTCCCCCACACCCCTCCCCCACCCCCATGTCCCCTCCCCACCCCTCCCCCACACCCTCCCCCACCCCTCCCCATGTCCCCTCCCCTACCTCCTCCCCCCGCGTCCCCTCCCCCC	1304.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.045;ClippingRankSum=-0.000;DP=41;ExcessHet=3.0103;FS=15.315;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=34.34;ReadPosRankSum=4.101;SOR=4.403;set=HC	GT:AD:AF:DP	1/1:9,29:0.76:38
chr16	813783	.	C	A	942	.	AC=1;AF=0.500;AN=2;BRF=0.53;FR=0.5000;HP=3;HapScore=3;MGOF=97;MMLQ=28;MQ=59.64;NF=0;NR=19;PP=942;QD=51.4090111867;SC=CCAGCATCCCCTCCCCCTTCC;SbPval=1.0;Source=Platypus;TC=24;TCF=4;TCR=20;TR=19;WE=813791;WS=813765;set=Platypus	GT:AD:AF:DP	1/0:5,19:0.79:24
chr16	815628	rs1737340	A	G	15957.77	.	AC=2;AF=1.00;AN=2;DB;DP=607;set=Intersection	GT:AD:AF:DP	1/1:0,598:1.00:598
chr16	816874	rs117721221	C	T	7519.77	.	AC=1;AF=0.500;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	0/1:129,325:0.72:454
chr16	820480	.	G	GCACCCC	385.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.514;ClippingRankSum=0.000;DP=114;ExcessHet=3.0103;FS=6.451;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.28;ReadPosRankSum=0.319;SOR=0.020;set=HC	GT:AD:AF:DP	0/1:41,12:0.23:53
chr16	825003	rs142136229	G	T	1682.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:179,89:0.33:268
chr16	837310	rs531278	A	G	927.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:19,33:0.63:52
chr16	839262	rs569951	A	G	7373.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr16	845901	rs2982244	T	C	19431.77	.	AC=2;AF=1.00;AN=2;DB;DP=706;set=Intersection	GT:AD:AF:DP	1/1:0,701:1.00:701
chr16	855342	rs614048	A	G	219.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.296;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=3.867;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.20;ReadPosRankSum=-0.725;SOR=1.253;set=HC	GT:AD:AF:DP	0/1:82,18:0.18:100
chr16	855717	rs1005190	C	G	2668.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.348;ClippingRankSum=0.000;DB;DP=555;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.91;ReadPosRankSum=0.703;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:388,155:0.29:543
chr16	857673	rs58297819	G	A	411.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:57,18:0.24:75
chr16	857697	rs59540665	C	A	305.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:43,11:0.20:54
chr16	905559	rs4984949	A	C	935.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr16	942989	rs11864203	G	C	2933.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:56,128:0.70:184
chr16	943107	rs4984705	A	G	12683.77	.	AC=1;AF=0.500;AN=2;DB;DP=551;set=Intersection	GT:AD:AF:DP	0/1:199,349:0.64:548
chr16	943130	rs4984706	C	G	12073.77	.	AC=1;AF=0.500;AN=2;DB;DP=520;set=Intersection	GT:AD:AF:DP	0/1:199,317:0.61:516
chr16	943317	rs11404654	C	CT	3517.73	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:94,146:0.61:240
chr16	943361	rs4984707	T	C	4057.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:106,184:0.63:290
chr16	943534	rs4984708	C	A	1135.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:22,44:0.67:66
chr16	984113	rs11248955	C	A	1038.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:22,40:0.65:62
chr16	997352	rs12446579	A	G	2404.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:40,103:0.72:143
chr16	997454	rs72769410	C	T	3768.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:75,167:0.69:242
chr16	997473	rs12447306	T	C	3569.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:80,162:0.67:242
chr16	997496	rs12445470	C	A	3054.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:79,140:0.64:219
chr16	997520	rs12447329	T	C	2595.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:74,113:0.60:187
chr16	1004605	rs12448005	A	G	3975.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:91,164:0.64:255
chr16	1004694	rs3751666	A	G	2381.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:64,106:0.62:170
chr16	1004743	rs3751665	C	T	1654.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:35,72:0.67:107
chr16	1014119	rs11862542	A	G	1448.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:34,64:0.65:98
chr16	1021000	.	CCGGAGGCCCCGCCCATTCT	CAGGCCCCGCCCATTCT,C	690.73	.	AC=1,0;AF=0.500,0.00;ALERT;AN=2;DP=46;set=Intersection	GT:AF:DP	0/1:0.52:44
chr16	1021004	.	AGGCCCCGCCCATTCTC	A	690.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.594;ClippingRankSum=0.000;DP=42;ExcessHet=3.0103;FS=2.977;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.45;ReadPosRankSum=-0.225;SOR=1.255;set=HC	GT:AD:AF:DP	0/1:19,23:0.55:42
chr16	1021020	.	C	A	1112	.	AC=1;AF=0.500;AN=2;BRF=0.48;FR=0.5000;HP=2;HapScore=4;MGOF=4;MMLQ=24;MQ=60.0;NF=1;NR=6;PP=1112;QD=163.824458935;SC=CGCCCATTCTCGGAGGCCCCG;SbPval=0.45;Source=Platypus;TC=24;TCF=2;TCR=22;TR=7;WE=1021028;WS=1020990;set=Platypus	GT:AD:AF:DP	1/0:17,7:0.29:24
chr16	1031090	rs113250895	G	A	1383.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:18,59:0.77:77
chr16	1031161	rs75555675	C	A	3571.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:67,163:0.71:230
chr16	1031305	.	A	T	241	.	AC=1;AF=0.500;AN=2;BRF=0.52;FR=0.5000;HP=2;HapScore=2;MGOF=42;MMLQ=26;MQ=55.92;NF=6;NR=14;PP=241;QD=13.7885606274;SC=TGTGTGTGTGAGAGAGAGAGA;SbPval=0.49;Source=Platypus;TC=58;TCF=16;TCR=42;TR=20;WE=1031318;WS=1031293;set=Platypus	GT:AD:AF:DP	0/1:38,20:0.34:58
chr16	1034834	rs237674	T	C	11846.77	.	AC=2;AF=1.00;AN=2;DB;DP=466;set=Intersection	GT:AD:AF:DP	1/1:0,462:1.00:462
chr16	1034954	rs11542178	T	C	2762.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:67,121:0.64:188
chr16	1115495	rs213659	T	C	1633.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:33,73:0.69:106
chr16	1115849	rs80286221	C	A	1008.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.340;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.12;ReadPosRankSum=1.655;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:141,56:0.28:197
chr16	1115904	rs66626263	G	A	1104.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.240;ClippingRankSum=0.000;DB;DP=285;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.96;ReadPosRankSum=-1.956;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:206,73:0.26:279
chr16	1116169	rs7189857	A	G	4203.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr16	1116220	rs34024516	T	TG	3838.73	.	AC=2;AF=1.00;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.45;QD=34.58;SOR=1.189;set=HC	GT:AD:AF:DP	1/1:0,111:1.00:111
chr16	1116243	rs35432067	C	T	431.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.643;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=0.147;QD=4.15;ReadPosRankSum=0.139;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:73,31:0.30:104
chr16	1116445	rs530518	A	G	8931.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,328:1.00:328
chr16	1116567	rs598257	C	A	2820.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:63,123:0.66:186
chr16	1129525	rs4988488	G	A	5792.77	.	AC=1;AF=0.500;AN=2;DB;DP=393;MQ=59.98;set=Intersection	GT:AD:AF:DP	0/1:136,253:0.65:389
chr16	1129872	rs169068	C	T	11614.77	.	AC=2;AF=1.00;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	1/1:0,419:1.00:419
chr16	1129912	rs642249	A	G	7491.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:2,252:0.99:254
chr16	1131181	rs12599155	C	T	3951.77	.	AC=1;AF=0.500;AN=2;DB;DP=702;set=Intersection	GT:AD:AF:DP	0/1:452,221:0.33:673
chr16	1131207	rs73494036	G	A	6765.77	.	AC=1;AF=0.500;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	0/1:148,279:0.65:427
chr16	1143443	.	GAC	G	241.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.473;ClippingRankSum=-0.000;DP=19;ExcessHet=3.0103;FS=2.077;MLEAC=1;MLEAF=0.500;MQ=60.57;MQRankSum=0.674;QD=13.43;ReadPosRankSum=-1.358;SOR=1.781;set=HC	GT:AD:AF:DP	0/1:9,9:0.50:18
chr16	1143547	rs73494080	T	G	1174.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:41,55:0.57:96
chr16	1143978	rs142667444	G	GC	2603.73	.	AC=1;AF=0.500;AN=2;DB;DP=179;MQ=60.12;set=Intersection	GT:AD:AF:DP	0/1:76,99:0.57:175
chr16	1203705	.	C	T	126.88	.	AC=1;AF=0.500;AN=2;DP=6;set=Intersection	GT:AD:AF:DP	0/1:1,5:0.83:6
chr16	1204116	rs112034409	A	G	185.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.182;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.63;ReadPosRankSum=-1.452;SOR=0.336;set=HC	GT:AD:AF:DP	0/1:20,13:0.39:33
chr16	1244877	rs9936834	G	A	5155.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.09;SOR=1.195;set=HC	GT:AD:AF:DP	1/1:0,139:1.00:139
chr16	1244887	rs3751661	T	A	2149.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.722;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=1.268;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.11;ReadPosRankSum=-1.013;SOR=0.842;set=HC	GT:AD:AF:DP	0/1:63,101:0.62:164
chr16	1250559	rs8044363	T	C	7020.77	.	AC=1;AF=0.500;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	0/1:131,320:0.71:451
chr16	1252259	rs9934839	A	G	5882.77	.	AC=1;AF=0.500;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	0/1:122,247:0.67:369
chr16	1252369	rs61734410	C	T	1698.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:213,95:0.31:308
chr16	1254369	rs3751664	C	T	1149.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:141,64:0.31:205
chr16	1254577	rs11640345	T	C	446.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:5,16:0.76:21
chr16	1255030	rs2974835	A	G	372.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:23,19:0.45:42
chr16	1255206	rs28365123	C	T	6615.77	.	AC=1;AF=0.500;AN=2;DB;DP=488;set=Intersection	GT:AD:AF:DP	0/1:188,299:0.61:487
chr16	1257234	rs200453348	GGGGCT	G	8015.73	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:103,202:0.66:305
chr16	1257731	rs12930875	G	A	6335.77	.	AC=1;AF=0.500;AN=2;DB;DP=482;set=Intersection	GT:AD:AF:DP	0/1:165,313:0.65:478
chr16	1258189	rs59529743	G	A	1829.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:49,79:0.62:128
chr16	1260021	rs8056494	G	T	4533.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr16	1260277	rs146945676	A	G	1391.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:22,53:0.71:75
chr16	1260481	rs8063574	T	C	16521.77	.	AC=2;AF=1.00;AN=2;DB;DP=622;set=Intersection	GT:AD:AF:DP	1/1:0,608:1.00:608
chr16	1260767	rs2738897	G	A	2098.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:168,105:0.38:273
chr16	1261024	rs2738898	C	T	340.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:59,20:0.25:79
chr16	1261119	rs2738899	G	A	650.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.366;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=1.733;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.34;ReadPosRankSum=-1.397;SOR=0.491;set=HC	GT:AD:AF:DP	0/1:112,38:0.25:150
chr16	1261162	rs72552039	C	T	4611.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:71,198:0.74:269
chr16	1261219	rs2753326	A	G	5592.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.620;ClippingRankSum=0.000;DB;DP=509;ExcessHet=3.0103;FS=3.547;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.01;ReadPosRankSum=-0.643;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:348,160:0.31:508
chr16	1261222	rs2753325	A	G	5616.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.447;ClippingRankSum=0.000;DB;DP=521;ExcessHet=3.0103;FS=2.686;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.80;ReadPosRankSum=-0.160;SOR=0.950;set=HC	GT:AD:AF:DP	0/1:358,162:0.31:520
chr16	1261282	rs4984637	T	C	19728.77	.	AC=2;AF=1.00;AN=2;DB;DP=626;set=Intersection	GT:AD:AF:DP	1/1:0,625:1.00:625
chr16	1261377	rs2738900	G	A	1808.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:196,94:0.32:290
chr16	1265720	rs3897150	C	T	7416.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr16	1266803	rs11395347	C	CT	1497.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr16	1268494	rs2745136	C	T	10067.77	.	AC=2;AF=1.00;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	1/1:0,367:1.00:367
chr16	1269029	rs2738893	T	C	7203.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr16	1270162	rs1054645	G	A	11298.77	.	AC=2;AF=1.00;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	1/1:0,429:1.00:429
chr16	1270349	rs4247094	T	C	5236.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr16	1271890	rs1004041	G	T	1742.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:198,102:0.34:300
chr16	1272038	rs11248860	G	A	9495.77	.	AC=2;AF=1.00;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	1/1:1,368:1.00:369
chr16	1272684	rs4984638	C	G	760.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:58,40:0.41:98
chr16	1272865	rs4984639	G	A	1248.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr16	1273490	rs760357	C	T	540.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:48,29:0.38:77
chr16	1273638	rs909920	A	G	6766.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr16	1275135	rs9938123	T	C	5440.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr16	1278599	rs4360940	A	G	9459.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.18;QD=38.30;SOR=1.037;set=HC	GT:AD:AF:DP	1/1:0,247:1.00:247
chr16	1278599	.	AACAGGAGGGG	GACAGGAGGGC,GACAGGAGGGG	2060	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.41;FR=0.5000,0.5000;HP=1;HapScore=1;MGOF=4;MMLQ=25;MQ=57.2;NF=68,110;NR=44,73;PP=2060,1109;QD=18.8702488827;SC=TGGTGTTTTGAACAGGAGGGG;SbPval=0.55;Source=Platypus;TC=183;TCF=110;TCR=73;TR=112,183;WE=1278617;WS=1278589;set=Platypus	GT:AF:DP	0/1:0.61:183
chr16	1278609	rs77309587	G	C	3692.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.808;ClippingRankSum=0.000;DB;DP=274;ExcessHet=3.0103;FS=1.519;MLEAC=1;MLEAF=0.500;MQ=59.54;MQRankSum=-0.301;QD=13.73;ReadPosRankSum=0.445;SOR=0.591;set=HC	GT:AD:AF:DP	0/1:102,167:0.62:269
chr16	1278744	rs62012862	C	T	1091.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.198;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=0.747;MLEAC=1;MLEAF=0.500;MQ=52.00;MQRankSum=-0.841;QD=8.27;ReadPosRankSum=-0.590;SOR=0.579;set=HC	GT:AD:AF:DP	0/1:92,40:0.30:132
chr16	1278767	rs201725275	C	T	829.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.695;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=1.163;MLEAC=1;MLEAF=0.500;MQ=46.21;MQRankSum=-1.091;QD=10.78;ReadPosRankSum=1.408;SOR=0.864;set=HC	GT:AD:AF:DP	0/1:53,24:0.31:77
chr16	1278806	rs199504258	G	A	278.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.482;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=39.97;MQRankSum=0.839;QD=8.71;ReadPosRankSum=2.942;SOR=0.324;set=HC	GT:AD:AF:DP	0/1:20,12:0.38:32
chr16	1278870	rs199514009	G	T	36.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=18.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr16	1279537	rs188458795	C	G	145.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.917;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.91;MQRankSum=-1.205;QD=4.70;ReadPosRankSum=-2.155;SOR=1.075;set=HC	GT:AD:AF:DP	0/1:26,5:0.16:31
chr16	1279545	rs1800990	T	C	1019.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr16	1279555	rs148897236	C	T	334.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.415;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.70;MQRankSum=-0.870;QD=7.97;ReadPosRankSum=-2.894;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:31,11:0.26:42
chr16	1279574	rs199887053	C	G	694.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.008;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.60;MQRankSum=-1.325;QD=10.69;ReadPosRankSum=-2.503;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:45,20:0.31:65
chr16	1279584	rs111992451	T	C	748.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.141;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.923;MLEAC=1;MLEAF=0.500;MQ=57.96;MQRankSum=-3.192;QD=9.13;ReadPosRankSum=-1.188;SOR=0.885;set=HC	GT:AD:AF:DP	0/1:58,24:0.29:82
chr16	1279623	rs72633259	G	A	461.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:84,33:0.28:117
chr16	1279704	rs202107419	A	G	388.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.881;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=1.085;MLEAC=1;MLEAF=0.500;MQ=57.65;MQRankSum=-3.062;QD=4.92;ReadPosRankSum=0.195;SOR=0.523;set=HC	GT:AD:AF:DP	0/1:64,15:0.19:79
chr16	1279710	rs200630968	G	A	372.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.604;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.55;MQRankSum=-3.178;QD=4.90;ReadPosRankSum=-0.287;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:62,14:0.18:76
chr16	1279714	rs192643610	A	G	291.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.264;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.27;MQRankSum=-3.334;QD=4.29;ReadPosRankSum=0.296;SOR=0.570;set=HC	GT:AD:AF:DP	0/1:56,12:0.18:68
chr16	1279717	rs201728868	C	T	309.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.726;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.14;MQRankSum=-3.140;QD=4.77;ReadPosRankSum=0.149;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:53,12:0.18:65
chr16	1279732	rs201836020	C	A	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.889;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=3.504;MLEAC=1;MLEAF=0.500;MQ=56.59;MQRankSum=-1.788;QD=0.69;ReadPosRankSum=1.884;SOR=1.382;set=HC	GT:AD:AF:DP	0/1:39,7:0.15:46
chr16	1291114	rs28580251	C	G	502.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.103;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=5.516;MLEAC=1;MLEAF=0.500;MQ=47.14;MQRankSum=2.443;QD=17.96;ReadPosRankSum=-1.033;SOR=0.084;set=HC	GT:AD:AF:DP	0/1:5,23:0.82:28
chr16	1291188	rs17434400	C	T	219.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:52,16:0.24:68
chr16	1291597	rs144979264	C	G	772.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.449;ClippingRankSum=0.000;DB;DP=228;ExcessHet=3.0103;FS=1.244;MLEAC=1;MLEAF=0.500;MQ=47.31;MQRankSum=0.120;QD=3.39;ReadPosRankSum=-1.578;SOR=0.803;set=HC	GT:AD:AF:DP	0/1:175,53:0.23:228
chr16	1291622	rs149113013	A	G	2026.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:190,115:0.38:305
chr16	1291623	.	C	T	175.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.334;ClippingRankSum=0.000;DP=306;ExcessHet=3.0103;FS=5.518;MLEAC=1;MLEAF=0.500;MQ=48.10;MQRankSum=-2.584;QD=0.57;ReadPosRankSum=-2.091;SOR=1.332;set=HC	GT:AD:AF:DP	0/1:282,24:0.08:306
chr16	1291624	.	C	G	175.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.849;ClippingRankSum=0.000;DP=313;ExcessHet=3.0103;FS=8.319;MLEAC=1;MLEAF=0.500;MQ=48.00;MQRankSum=-2.878;QD=0.56;ReadPosRankSum=-2.428;SOR=1.489;set=HC	GT:AD:AF:DP	0/1:287,26:0.08:313
chr16	1291639	rs201223167	A	G	95.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.222;ClippingRankSum=0.000;DB;DP=392;ExcessHet=3.0103;FS=7.921;MLEAC=1;MLEAF=0.500;MQ=48.23;MQRankSum=-1.281;QD=0.25;ReadPosRankSum=-3.745;SOR=1.254;set=HC	GT:AD:AF:DP	0/1:341,49:0.13:390
chr16	1291717	rs202230226	T	TG	963.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.985;ClippingRankSum=0.000;DB;DP=308;ExcessHet=3.0103;FS=8.722;MLEAC=1;MLEAF=0.500;MQ=46.06;MQRankSum=-2.278;QD=3.30;ReadPosRankSum=-0.438;SOR=1.211;set=HC	GT:AD:AF:DP	0/1:238,54:0.18:292
chr16	1291753	rs369483846	CCTGGGCTCCCT	C	583.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.932;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=4.099;MLEAC=1;MLEAF=0.500;MQ=42.69;MQRankSum=-1.141;QD=3.45;ReadPosRankSum=0.039;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:143,26:0.15:169
chr16	1291800	rs375717182	G	C	314.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.279;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=6.990;MLEAC=1;MLEAF=0.500;MQ=38.95;MQRankSum=1.778;QD=3.50;ReadPosRankSum=-2.346;SOR=0.015;set=HC	GT:AD:AF:DP	0/1:72,18:0.20:90
chr16	1291831	rs202156919	G	C	439.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.023;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=38.94;MQRankSum=1.771;QD=5.57;ReadPosRankSum=-0.787;SOR=0.068;set=HC	GT:AD:AF:DP	0/1:63,16:0.20:79
chr16	1291850	rs200171211	T	C	426.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.764;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=38.92;MQRankSum=0.542;QD=5.85;ReadPosRankSum=0.998;SOR=0.071;set=HC	GT:AD:AF:DP	0/1:58,15:0.21:73
chr16	1291941	rs201280504	G	A	131.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.466;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=39.04;MQRankSum=-0.567;QD=5.73;ReadPosRankSum=-0.957;SOR=0.200;set=HC	GT:AD:AF:DP	0/1:16,7:0.30:23
chr16	1292003	rs199639987	C	G	46.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=39.20;MQRankSum=-0.524;QD=9.35;ReadPosRankSum=0.842;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:3,2:0.40:5
chr16	1292021	rs200521594	C	A	222.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.980;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=3.090;MLEAC=1;MLEAF=0.500;MQ=39.73;MQRankSum=0.238;QD=20.25;ReadPosRankSum=0.679;SOR=1.773;set=HC	GT:AD:AF:DP	0/1:3,8:0.73:11
chr16	1292425	rs67723611	T	C	564.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.39;QD=33.22;SOR=5.784;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr16	1306268	rs1969652	C	T	1222.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:87,71:0.45:158
chr16	1306346	rs3865205	CG	GC	58.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.247;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=10.569;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.13;MQRankSum=-7.611;QD=0.37;ReadPosRankSum=0.105;SOR=1.526;set=HC	GT:AD:AF:DP	0/1:147,13:0.08:160
chr16	1306355	rs1800984	T	C	5063.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr16	1306377	rs3927397	G	A	1348.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:50,66:0.57:116
chr16	1306410	rs3993979	A	G	151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.184;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=4.006;MLEAC=1;MLEAF=0.500;MQ=57.48;MQRankSum=-2.305;QD=2.08;ReadPosRankSum=-0.107;SOR=1.189;set=HC	GT:AD:AF:DP	0/1:57,16:0.22:73
chr16	1306439	rs2401941	C	T	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.711;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=5.450;MLEAC=1;MLEAF=0.500;MQ=57.84;MQRankSum=-3.809;QD=0.69;ReadPosRankSum=-1.403;SOR=1.306;set=HC	GT:AD:AF:DP	0/1:50,9:0.15:59
chr16	1306559	rs3830782	AG	A	2250.73	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:44,71:0.62:115
chr16	1306671	rs1141966	G	A	1826.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.081;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=-1.984;QD=12.10;ReadPosRankSum=0.775;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:98,53:0.35:151
chr16	1306681	rs1141967	G	A	1832.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.678;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=-1.952;QD=12.82;ReadPosRankSum=0.494;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:91,52:0.36:143
chr16	1306802	rs2401930	A	G	248.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.599;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=8.769;MLEAC=1;MLEAF=0.500;MQ=56.27;MQRankSum=-4.282;QD=5.08;ReadPosRankSum=-1.444;SOR=1.215;set=HC	GT:AD:AF:DP	0/1:40,9:0.18:49
chr16	1306817	rs3993983	G	A	241.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.704;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=5.299;MLEAC=1;MLEAF=0.500;MQ=56.32;MQRankSum=-4.408;QD=4.74;ReadPosRankSum=1.184;SOR=0.870;set=HC	GT:AD:AF:DP	0/1:41,10:0.20:51
chr16	1306918	rs74470113	C	T	1308.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.676;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=3.550;MLEAC=1;MLEAF=0.500;MQ=59.43;MQRankSum=-5.389;QD=9.99;ReadPosRankSum=0.803;SOR=0.615;set=HC	GT:AD:AF:DP	0/1:93,38:0.29:131
chr16	1306921	rs78324915	G	A	1311.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.442;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=4.630;MLEAC=1;MLEAF=0.500;MQ=59.34;MQRankSum=-5.715;QD=9.57;ReadPosRankSum=1.181;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:98,39:0.28:137
chr16	1306927	rs79472859	C	T	1311.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.049;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=5.890;MLEAC=1;MLEAF=0.500;MQ=59.34;MQRankSum=-5.743;QD=9.51;ReadPosRankSum=1.194;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:99,39:0.28:138
chr16	1306971	rs72775466	A	G	998.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.226;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=3.565;MLEAC=1;MLEAF=0.500;MQ=59.48;MQRankSum=-5.625;QD=6.13;ReadPosRankSum=1.984;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:129,34:0.21:163
chr16	1306973	rs79313952	A	G	992.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.176;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=3.536;MLEAC=1;MLEAF=0.500;MQ=59.49;MQRankSum=-5.688;QD=5.98;ReadPosRankSum=1.732;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:132,34:0.20:166
chr16	1306981	rs2272971	G	A	1958.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:75,93:0.55:168
chr16	1306986	rs72775467	C	T	220.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.729;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=5.220;MLEAC=1;MLEAF=0.500;MQ=59.58;MQRankSum=-5.997;QD=1.32;ReadPosRankSum=1.272;SOR=1.137;set=HC	GT:AD:AF:DP	0/1:139,28:0.17:167
chr16	1311333	rs3765436	A	G	8945.77	.	AC=1;AF=0.500;AN=2;DB;DP=607;set=Intersection	GT:AD:AF:DP	0/1:192,401:0.68:593
chr16	1311361	rs57416515	C	T	3424.77	.	AC=1;AF=0.500;AN=2;DB;DP=613;set=Intersection	GT:AD:AF:DP	0/1:396,198:0.33:594
chr16	1311513	rs3085832	G	GGGCA	7475.73	.	AC=1;AF=0.500;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	0/1:97,186:0.66:283
chr16	1312546	rs1610293	T	A	9681.77	.	AC=1;AF=0.500;AN=2;DB;DP=645;set=Intersection	GT:AD:AF:DP	0/1:206,434:0.68:640
chr16	1312826	rs7184111	A	G	5052.77	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:93,229:0.71:322
chr16	1312976	rs8048322	T	G	4402.77	.	AC=1;AF=0.500;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	0/1:146,211:0.59:357
chr16	1323539	rs8060254	TG	CA	2098.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;JOINED;set=Intersection	GT:AD:AF:DP	0/1:24,51:0.68:75
chr16	1323781	rs1610294	T	C	3388.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:56,158:0.74:214
chr16	1326785	rs35786958	A	T	571.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.310;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=1.114;MLEAC=1;MLEAF=0.500;MQ=59.58;MQRankSum=0.205;QD=11.67;ReadPosRankSum=1.221;SOR=0.461;set=HC	GT:AD:AF:DP	0/1:22,27:0.55:49
chr16	1358608	rs148430996	ATGAGGGAGGGAGGGAATTAG	A	882.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.67;QD=38.38;SOR=3.352;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr16	1358917	rs11644706	A	T	773.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr16	1358976	rs11645809	T	A	283.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr16	1364140	rs9941160	T	C	9956.77	.	AC=2;AF=1.00;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	1/1:1,362:1.00:363
chr16	1364281	rs4984806	T	C	6460.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr16	1370303	rs909916	T	C	7933.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.32;SOR=0.774;set=HC	GT:AD:AF:DP	1/1:0,179:1.00:179
chr16	1370309	rs909917	C	G	7674.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.62;SOR=0.841;set=HC	GT:AD:AF:DP	1/1:0,172:1.00:172
chr16	1370597	rs4017786	G	C	5236.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr16	1370614	rs8063770	C	G	4247.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr16	1370630	rs8043720	A	G	3257.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr16	1374656	rs761060	A	G	2229.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr16	1374818	rs8063	A	G	10743.77	.	AC=2;AF=1.00;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	1/1:0,387:1.00:387
chr16	1388416	rs13338616	T	C	1000.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr16	1388888	rs7197416	C	T	9595.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:0,350:1.00:350
chr16	1389153	rs7202563	C	A	9276.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chr16	1389751	rs113792347	C	G	3139.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:78,136:0.64:214
chr16	1391221	rs34468534	G	A	11803.77	.	AC=2;AF=1.00;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	1/1:0,426:1.00:426
chr16	1391871	rs2369699	C	G	8272.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chr16	1392877	rs742458	T	C	5861.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr16	1394507	rs1132356	A	C	8392.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:1,296:1.00:297
chr16	1394551	rs11248872	A	G	9031.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:0,341:1.00:341
chr16	1394726	.	TG	T	2969	.	AC=1;AF=0.500;AN=2;BRF=0.43;FR=0.5000;HP=4;HapScore=1;MGOF=153;MMLQ=28;MQ=60.12;NF=79;NR=184;PP=2969;QD=20;SC=AGTGCTGTCCTGGGGCTGGGG;SbPval=0.35;Source=Platypus;TC=302;TCF=83;TCR=219;TR=263;WE=1394734;WS=1394716;set=Platypus	GT:AD:AF:DP	1/0:39,263:0.87:302
chr16	1394741	rs151251565	AGCCAACAGG	A	21400.73	.	AC=2;AF=1.00;AN=2;DB;DP=514;set=Intersection	GT:AD:AF:DP	1/1:2,485:1.00:487
chr16	1396788	rs3215518	TGCAGGTGGGGCCAGCGGG	T	957.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.586;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=3.356;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.01;ReadPosRankSum=-0.760;SOR=1.226;set=HC	GT:AD:AF:DP	0/1:59,28:0.32:87
chr16	1397518	rs34339539	G	GC	4043.73	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:87,147:0.63:234
chr16	1398077	rs34766513	C	CCT	36579.73	.	AC=2;AF=1.00;AN=2;DB;DP=835;set=Intersection	GT:AD:AF:DP	1/1:2,815:1.00:817
chr16	1399619	rs200311878	G	A	4875.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:94,216:0.70:310
chr16	1400019	rs72779215	G	A	1679.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:89,80:0.47:169
chr16	1407792	rs4984644	T	C	808.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr16	1407809	rs4984820	T	C	712.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr16	1417408	rs4984823	T	C	2696.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr16	1417558	.	G	GCCCT	355.74	.	AC=2;AF=1.00;AN=2;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr16	1419947	rs11248874	A	G	3078.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr16	1433766	rs12918814	T	C	10652.77	.	AC=2;AF=1.00;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	1/1:0,402:1.00:402
chr16	1442911	rs61741579	C	T	4812.77	.	AC=1;AF=0.500;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	0/1:140,217:0.61:357
chr16	1447278	.	A	G	818	.	AC=2;AF=1.00;AN=2;BRF=0.47;FR=1.0000;HP=2;HapScore=1;MGOF=25;MMLQ=24;MQ=59.05;NF=17;NR=27;PP=818;QD=19.3811639215;SC=CGTGCTTCACACTGGGGCAGG;SbPval=0.53;Source=Platypus;TC=45;TCF=17;TCR=28;TR=44;WE=1447286;WS=1447268;set=Platypus	GT:AD:AF:DP	1/1:1,44:0.98:45
chr16	1447319	.	G	A	589	.	AC=2;AF=1.00;AN=2;BRF=0.26;FR=1.0000;HP=4;HapScore=1;MGOF=38;MMLQ=28;MQ=58.14;NF=7;NR=20;PP=589;QD=23.1026375017;SC=AGGTGTCAGGGGGACACAGAG;SbPval=0.66;Source=Platypus;TC=28;TCF=8;TCR=20;TR=27;WE=1447327;WS=1447309;set=Platypus	GT:AD:AF:DP	1/1:1,27:0.96:28
chr16	1451519	rs761068	G	A	598.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.137;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=12.882;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.11;ReadPosRankSum=-0.295;SOR=1.333;set=HC	GT:AD:AF:DP	0/1:8,27:0.77:35
chr16	1455900	rs8044833	C	T	14661.77	.	AC=2;AF=1.00;AN=2;DB;DP=563;set=Intersection	GT:AD:AF:DP	1/1:0,558:1.00:558
chr16	1458381	rs1609562	G	C	363.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.25;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr16	1458561	rs2179534	T	C	1444.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr16	1464081	rs201417307	C	G	192.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.866;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=1.172;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.01;ReadPosRankSum=-2.101;SOR=0.474;set=HC	GT:AD:AF:DP	0/1:49,15:0.23:64
chr16	1464636	rs111437424	A	C	2102.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.36;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr16	1476465	rs4984834	A	G	405.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr16	1484338	rs7192100	A	G	3915.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr16	1484392	rs12598718	G	C	6605.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:4,243:0.98:247
chr16	1484473	rs7192331	A	G	7154.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:2,273:0.99:275
chr16	1492660	rs760993	T	C	1830.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr16	1493030	rs1883480	C	G	5071.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr16	1493098	rs760994	G	A	2464.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr16	1493130	rs760995	C	T	2578.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr16	1493759	rs12596752	C	T	5372.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr16	1497137	rs12599176	C	T	3667.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr16	1498197	rs2235578	A	G	2746.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr16	1498520	rs12597739	A	G	4155.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr16	1499377	rs742408	C	T	4611.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr16	1500708	rs61073146	G	GC	2554.73	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:39,84:0.68:123
chr16	1503879	rs2235579	T	A	21690.77	.	AC=2;AF=1.00;AN=2;DB;DP=812;set=Intersection	GT:AD:AF:DP	1/1:2,803:1.00:805
chr16	1504017	rs4786337	A	G	3146.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:1,102:0.99:103
chr16	1504633	rs4265806	C	T	1675.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr16	1505599	rs7190701	C	T	2806.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr16	1507778	rs9922189	T	C	22445.77	.	AC=2;AF=1.00;AN=2;DB;DP=869;MQ=60.01;set=Intersection	GT:AD:AF:DP	1/1:2,860:1.00:862
chr16	1507879	.	A	AG	2150.73	.	AC=1;AF=0.500;AN=2;DP=278;MQ=60.04;set=Intersection	GT:AD:AF:DP	0/1:161,94:0.37:255
chr16	1524085	rs55927314	C	CA	99.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.347;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=0.960;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.87;ReadPosRankSum=-2.032;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:91,23:0.20:114
chr16	1524850	rs3751884	A	G	655.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:101,42:0.29:143
chr16	1545448	rs2235624	A	G	723.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.797;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=4.354;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.21;ReadPosRankSum=1.576;SOR=0.564;set=HC	GT:AD:AF:DP	0/1:93,46:0.33:139
chr16	1547220	rs2235630	C	T	969.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr16	1549343	rs11344586	GC	G	8512.73	.	AC=1;AF=0.500;AN=2;DB;DP=414;MQ=60.03;set=Intersection	GT:AD:AF:DP	0/1:134,267:0.67:401
chr16	1551826	rs72779276	C	G	1099.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:77,47:0.38:124
chr16	1556493	.	C	T	1075.77	.	AC=1;AF=0.500;AN=2;DP=59;set=Intersection	GT:AD:AF:DP	0/1:16,41:0.72:57
chr16	1557090	rs11248882	A	G	1676.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:25,68:0.73:93
chr16	1557268	rs3736721	C	T	1118.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:20,49:0.71:69
chr16	1557794	rs12927760	A	T	1984.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:5,80:0.94:85
chr16	1559838	rs3180228	T	C	4364.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:98,200:0.67:298
chr16	1568402	rs2076434	A	G	2600.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:87,119:0.58:206
chr16	1570857	rs932391	T	C	2727.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:63,126:0.67:189
chr16	1573810	rs2745176	A	G	13909.77	.	AC=2;AF=1.00;AN=2;DB;DP=535;set=Intersection	GT:AD:AF:DP	1/1:0,533:1.00:533
chr16	1574863	rs2235640	G	A	3343.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:90,143:0.61:233
chr16	1578434	rs149176109	G	GCA	2776.73	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:46,81:0.64:127
chr16	1578436	.	A	ACC	1358	.	AC=1;AF=0.500;AN=2;BRF=0.26;FR=0.5000;HP=2;HapScore=2;MGOF=17;MMLQ=28;MQ=60.06;NF=27;NR=41;PP=1358;QD=20.2794117647;SC=ACACAGATGCACACACACATT;SbPval=0.71;Source=Platypus;TC=132;TCF=58;TCR=74;TR=68;WE=1578444;WS=1578435;set=Platypus	GT:AD:AF:DP	0/1:64,68:0.52:132
chr16	1584618	rs2076438	T	C	2340.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:44,109:0.71:153
chr16	1591962	rs2076443	G	A	5758.77	.	AC=1;AF=0.500;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	0/1:149,257:0.63:406
chr16	1592087	rs2076444	T	C	5055.77	.	AC=1;AF=0.500;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	0/1:157,242:0.61:399
chr16	1605051	rs9932984	A	G	1760.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:26,71:0.73:97
chr16	1608082	rs2076436	A	G	2512.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:47,106:0.69:153
chr16	1608177	rs2235641	A	G	1597.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:31,70:0.69:101
chr16	1614097	rs8048410	A	G	3016.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:68,137:0.67:205
chr16	1652614	rs2236269	T	A	1294.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:33,54:0.62:87
chr16	1656765	rs2859310	A	G	3939.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:97,181:0.65:278
chr16	1657012	rs7192480	C	T	6018.77	.	AC=1;AF=0.500;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	0/1:100,271:0.73:371
chr16	1657284	rs1894649	C	G	1062.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:22,46:0.68:68
chr16	1657350	rs743963	A	T	201.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:11,9:0.45:20
chr16	1660274	rs1057983	A	G	11324.77	.	AC=1;AF=0.500;AN=2;DB;DP=793;set=Intersection	GT:AD:AF:DP	0/1:263,522:0.66:785
chr16	1664931	rs7201813	T	C	2511.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:83,119:0.59:202
chr16	1682281	rs3169425	A	G	4521.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:129,215:0.62:344
chr16	1695451	.	A	C	1749.77	.	AC=1;AF=0.500;AN=2;DP=256;set=Intersection	GT:AD:AF:DP	0/1:150,96:0.39:246
chr16	1697025	rs13336131	C	T	1268.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.038;ClippingRankSum=0.000;DB;DP=273;ExcessHet=3.0103;FS=1.040;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.68;ReadPosRankSum=-1.682;SOR=0.591;set=HC	GT:AD:AF:DP	0/1:194,77:0.28:271
chr16	1716010	rs8058190	A	C	4938.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:1,178:0.99:179
chr16	1720844	rs2272893	A	G	2277.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:47,89:0.65:136
chr16	1733351	rs12719794	G	A	461.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:18,19:0.51:37
chr16	1733686	rs77163532	A	G	1617.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:25,66:0.73:91
chr16	1784875	rs111246013	TAGTG	T	3778.73	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:74,98:0.57:172
chr16	1810116	rs57876690	C	A	605.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:46,31:0.40:77
chr16	1812972	rs2294616	G	C	3698.77	.	AC=1;AF=0.500;AN=2;DB;DP=752;set=Intersection	GT:AD:AF:DP	0/1:516,229:0.31:745
chr16	1814391	rs2294618	T	C	758.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:54,39:0.42:93
chr16	1814964	rs2294621	C	T	987.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:26,41:0.61:67
chr16	1815337	rs2917508	G	A	302.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:25,13:0.34:38
chr16	1817754	rs2076427	A	G	3740.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:95,160:0.63:255
chr16	1817768	rs2076428	T	G	3626.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:95,157:0.62:252
chr16	1817935	rs2076429	A	C	5679.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:71,239:0.77:310
chr16	1818152	rs2076430	C	T	6051.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.984;ClippingRankSum=0.000;DB;DP=427;ExcessHet=3.0103;FS=0.541;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.34;ReadPosRankSum=2.648;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:153,269:0.64:422
chr16	1818152	.	CT	TC	2944	.	AC=1;AF=0.500;AN=2;BRF=0.47;FR=0.5000;HP=1;HapScore=1;MGOF=3;MMLQ=28;MQ=60.0;NF=104;NR=77;PP=2944;QD=20;SC=GCCTCTCCCACTCTCCACCTG;SbPval=0.51;Source=Platypus;TC=286;TCF=166;TCR=120;TR=181;WE=1818161;WS=1818142;set=Platypus	GT:AD:AF:DP	0/1:105,181:0.63:286
chr16	1818153	rs2437734	T	C	11557.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.949;ClippingRankSum=0.000;DB;DP=428;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=27.32;ReadPosRankSum=0.505;SOR=0.965;set=HC	GT:AD:AF:DP	1/1:2,421:1.00:423
chr16	1818503	rs2076431	G	C	3262.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:64,132:0.67:196
chr16	1818680	rs2072989	G	C	4166.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:93,185:0.67:278
chr16	1820992	rs11890	T	A	10818.77	.	AC=1;AF=0.500;AN=2;DB;DP=701;set=Intersection	GT:AD:AF:DP	0/1:210,482:0.70:692
chr16	1822159	rs2269123	T	C	821.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:101,44:0.30:145
chr16	1823024	rs11552431	G	T	2658.77	.	AC=1;AF=0.500;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	0/1:258,147:0.36:405
chr16	1824115	rs2076433	G	C	176.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:21,10:0.32:31
chr16	1825774	rs13339350	T	C	2608.77	.	AC=1;AF=0.500;AN=2;DB;DP=467;set=Intersection	GT:AD:AF:DP	0/1:312,147:0.32:459
chr16	1826023	rs9929680	G	A	1398.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:164,79:0.33:243
chr16	1826377	rs2235636	A	G	1202.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.73;SOR=1.880;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr16	1827522	rs13332165	T	G	82.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:18,6:0.25:24
chr16	1827836	rs1178432	T	C	4678.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr16	1836709	rs2575351	G	C	12721.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.66;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:0,347:1.00:347
chr16	1836710	rs79769512	G	A	3998.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.575;ClippingRankSum=0.000;DB;DP=352;ExcessHet=3.0103;FS=3.010;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.76;ReadPosRankSum=0.533;SOR=0.542;set=HC	GT:AD:AF:DP	0/1:125,215:0.63:340
chr16	1837900	rs344358	T	C	6820.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr16	1838037	rs2272977	C	G	1702.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:205,99:0.33:304
chr16	1838479	rs28534374	A	T	868.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr16	1838640	rs344359	T	C	6208.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr16	1838836	rs1065656	C	G	1164.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:38,52:0.58:90
chr16	1841033	rs17559	G	A	1958.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:44,84:0.66:128
chr16	1842209	rs3751893	A	G	5266.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr16	1843494	rs3817899	G	C	468.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:14,22:0.61:36
chr16	1843549	rs3817900	T	C	2069.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.100;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.00;ReadPosRankSum=-0.401;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:39,51:0.57:90
chr16	1843557	rs3817901	T	C	2135.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.351;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.25;ReadPosRankSum=-1.496;SOR=0.621;set=HC	GT:AD:AF:DP	0/1:39,57:0.59:96
chr16	1843672	rs3817902	T	C	1032.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:50,54:0.52:104
chr16	1844781	rs2256923	A	G	2218.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:26,57:0.69:83
chr16	1844801	rs9924224	T	C	2829.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:30,81:0.73:111
chr16	1844872	rs3829561	G	A	5721.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.344;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=1.164;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.51;ReadPosRankSum=2.493;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:65,143:0.69:208
chr16	1844875	rs3829562	G	A	3301.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.386;ClippingRankSum=0.000;DB;DP=217;ExcessHet=3.0103;FS=2.542;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.65;ReadPosRankSum=2.812;SOR=0.514;set=HC	GT:AD:AF:DP	0/1:69,142:0.67:211
chr16	1859150	rs1057071	G	A	8421.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.77;SOR=1.855;set=HC	GT:AD:AF:DP	1/1:0,184:1.00:184
chr16	1859153	rs1057070	T	C	8455.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.04;SOR=1.872;set=HC	GT:AD:AF:DP	1/1:0,192:1.00:192
chr16	1859432	rs1628812	G	C	4992.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr16	1859476	rs1629513	G	A	4785.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.91;SOR=2.115;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr16	1859482	rs1629534	A	C	4718.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.81;SOR=2.235;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr16	1859730	rs2745199	G	A	5105.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr16	1859850	rs1742442	A	G	9161.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:0,339:1.00:339
chr16	1869842	.	C	A	1565.77	.	AC=1;AF=0.500;AN=2;DP=81;set=Intersection	GT:AD:AF:DP	0/1:18,61:0.77:79
chr16	1870037	rs144480059	TGGGCTGCCTGCTGAGCTGAGG	T	2880.73	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:55,123:0.69:178
chr16	1872160	rs238680	G	A	1543.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:37,65:0.64:102
chr16	1872479	rs238679	A	G	1164.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:21,51:0.71:72
chr16	1873087	rs104843	C	A	1165.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:21,44:0.68:65
chr16	1876949	rs7188401	G	C	1250.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;MQ=60.05;set=Intersection	GT:AD:AF:DP	0/1:128,65:0.34:193
chr16	1877698	rs3743852	C	G	1832.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:189,92:0.33:281
chr16	1877913	rs13166	C	G	1088.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.703;ClippingRankSum=0.000;DB;DP=254;ExcessHet=3.0103;FS=2.446;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.36;ReadPosRankSum=0.801;SOR=0.521;set=HC	GT:AD:AF:DP	0/1:181,69:0.28:250
chr16	1884501	rs171162	A	T	50.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.323;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.81;ReadPosRankSum=0.868;SOR=0.204;set=HC	GT:AD:AF:DP	0/1:23,5:0.18:28
chr16	1894912	rs9806826	C	T	382.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.960;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.65;ReadPosRankSum=1.846;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:76,29:0.28:105
chr16	1902889	rs1617255	T	C	294.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;MQ=58.65;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr16	1904239	rs10500322	T	A	2599.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:51,109:0.68:160
chr16	1907652	rs428123	G	A	4431.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr16	1907701	rs408286	AG	CA	12814.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr16	1907946	rs411193	C	T	1900.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr16	1910219	rs391288	A	T	751.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr16	1910373	rs433268	C	G	5115.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr16	1912021	rs1657125	T	G	2217.77	.	AC=1;AF=0.500;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	0/1:234,130:0.36:364
chr16	1912139	rs380846	T	C	5713.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr16	1912205	rs1657126	T	C	352.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:46,16:0.26:62
chr16	1915886	rs58422887	T	A	156.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.355;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.61;ReadPosRankSum=-0.963;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:24,10:0.29:34
chr16	1917998	rs1742444	T	C	2062.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr16	1918094	rs78268797	T	G	1404.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.700;ClippingRankSum=0.000;DB;DP=229;ExcessHet=3.0103;FS=1.685;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.16;ReadPosRankSum=0.471;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:147,81:0.36:228
chr16	1918125	rs1742446	T	G	5920.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:1,223:1.00:224
chr16	1961674	rs337285	G	C	1442.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:156,76:0.33:232
chr16	1961726	rs61740580	G	C	6087.77	.	AC=1;AF=0.500;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	0/1:124,271:0.69:395
chr16	1961866	rs61742747	G	A	7149.77	.	AC=1;AF=0.500;AN=2;DB;DP=516;set=Intersection	GT:AD:AF:DP	0/1:184,318:0.63:502
chr16	1962046	rs1742399	CG	TA	5885.77	.	AC=1;AF=0.500;AN=2;DB;DP=399;JOINED;set=Intersection	GT:AD:AF:DP	0/1:238,161:0.40:399
chr16	1962132	rs8055325	G	A	2661.77	.	AC=1;AF=0.500;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	0/1:239,141:0.37:380
chr16	1968338	rs199930198	T	TC	168.80	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr16	1990994	rs13331553	T	C	28388.77	.	AC=2;AF=1.00;AN=2;DB;DP=1058;set=Intersection	GT:AD:AF:DP	1/1:8,1042:0.99:1050
chr16	1991014	rs111845910	G	A	5422.77	.	AC=1;AF=0.500;AN=2;DB;DP=1044;set=Intersection	GT:AD:AF:DP	0/1:730,305:0.29:1035
chr16	1991513	rs9934331	G	C	890.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:9,40:0.82:49
chr16	1992930	rs41286697	C	G	875.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:20,39:0.66:59
chr16	1994743	rs2754179	G	A	7431.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.04;SOR=1.595;set=HC	GT:AD:AF:DP	1/1:0,165:1.00:165
chr16	1994749	rs2531332	A	C	7771.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.94;SOR=1.421;set=HC	GT:AD:AF:DP	1/1:0,181:1.00:181
chr16	1994931	rs61276345	C	CAAGAG	10004.73	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:2,226:0.99:228
chr16	1994980	rs11640479	G	T	3098.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:1,103:0.99:104
chr16	1994992	rs60819893	G	GC	712.73	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:49,32:0.40:81
chr16	1995997	rs113439442	C	T	1754.77	.	AC=1;AF=0.500;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	0/1:252,100:0.28:352
chr16	1996075	rs1003904	G	A	3031.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr16	1996535	rs35725974	C	CA	3124.73	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr16	1997004	rs113956264	C	T	2204.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:49,95:0.66:144
chr16	1997113	rs45467097	G	A	2609.77	.	AC=1;AF=0.500;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	0/1:221,138:0.38:359
chr16	2003123	rs338778	G	A	780.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:21,36:0.63:57
chr16	2004718	rs2815301	T	C	3814.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr16	2009852	rs338788	G	C	6999.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:87,197:0.69:284
chr16	2009862	rs11382929	G	GC	6776.73	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:67,174:0.72:241
chr16	2009870	rs338789	C	G	5942.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;MQ=60.05;set=Intersection	GT:AD:AF:DP	0/1:53,144:0.73:197
chr16	2011082	rs731198	T	C	465.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:11,18:0.62:29
chr16	2011126	rs758335	A	G	1601.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr16	2013660	rs146974237	TC	T	232.73	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:6,10:0.62:16
chr16	2013715	rs72764892	C	G	576.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:7,26:0.79:33
chr16	2013756	rs72764893	T	C	1295.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:21,56:0.73:77
chr16	2014031	rs6366	C	G	1209.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr16	2014283	rs2286466	A	G	2895.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr16	2014528	rs17135712	G	A	1167.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:29,49:0.63:78
chr16	2014591	rs1141684	C	T	887.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:25,38:0.60:63
chr16	2015121	rs1133099	C	T	42.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.227;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.14;ReadPosRankSum=-1.914;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:16,4:0.20:20
chr16	2015432	rs1054002	C	T	2842.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.343;ClippingRankSum=0.000;DB;DP=562;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=-0.934;QD=5.19;ReadPosRankSum=0.214;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:381,167:0.30:548
chr16	2015477	rs1054003	C	T	1446.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.451;ClippingRankSum=0.000;DB;DP=277;ExcessHet=3.0103;FS=3.475;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=-0.913;QD=5.22;ReadPosRankSum=0.723;SOR=0.478;set=HC	GT:AD:AF:DP	0/1:195,82:0.30:277
chr16	2022074	rs28396225	C	T	1063.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:171,66:0.28:237
chr16	2024131	rs3743851	T	C	11258.77	.	AC=2;AF=1.00;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	1/1:0,415:1.00:415
chr16	2024355	rs3743850	G	T	8262.77	.	AC=1;AF=0.500;AN=2;DB;DP=519;set=Intersection	GT:AD:AF:DP	0/1:162,352:0.68:514
chr16	2025206	rs8053843	A	C	8901.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:0,325:1.00:325
chr16	2025411	rs12925447	G	C	697.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.18;ReadPosRankSum=0.655;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:121,46:0.28:167
chr16	2025587	rs140355892	C	T	4929.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:48,123:0.72:171
chr16	2025602	rs2230086	A	G	896.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:149,57:0.28:206
chr16	2025604	rs8052713	G	C	5636.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:60,155:0.72:215
chr16	2025678	rs17602	C	A	5946.77	.	AC=1;AF=0.500;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	0/1:137,266:0.66:403
chr16	2025765	rs12927588	A	G	3657.77	.	AC=1;AF=0.500;AN=2;DB;DP=530;set=Intersection	GT:AD:AF:DP	0/1:340,185:0.35:525
chr16	2025958	rs35795901	G	A	4259.77	.	AC=1;AF=0.500;AN=2;DB;DP=729;set=Intersection	GT:AD:AF:DP	0/1:480,234:0.33:714
chr16	2026177	rs36118556	T	C	1797.77	.	AC=1;AF=0.500;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	0/1:233,106:0.31:339
chr16	2026292	rs17604	T	C	1005.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:117,61:0.34:178
chr16	2026378	rs35958398	G	A	282.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:28,15:0.35:43
chr16	2026891	rs17605	T	C	2357.77	.	AC=1;AF=0.500;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	0/1:296,128:0.30:424
chr16	2026986	rs67220861	G	A	3043.77	.	AC=1;AF=0.500;AN=2;DB;DP=526;set=Intersection	GT:AD:AF:DP	0/1:349,169:0.33:518
chr16	2027291	rs66471978	T	C	3099.77	.	AC=1;AF=0.500;AN=2;DB;DP=593;set=Intersection	GT:AD:AF:DP	0/1:393,186:0.32:579
chr16	2027313	rs66748999	T	C	2824.77	.	AC=1;AF=0.500;AN=2;DB;DP=552;set=Intersection	GT:AD:AF:DP	0/1:369,164:0.31:533
chr16	2027955	rs11859495	A	G	524.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:74,33:0.31:107
chr16	2028402	rs8460	A	C	5762.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr16	2028677	rs34968293	A	G	2266.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.687;ClippingRankSum=0.000;DB;DP=537;ExcessHet=3.0103;FS=1.962;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.32;ReadPosRankSum=-0.964;SOR=0.600;set=HC	GT:AD:AF:DP	0/1:377,148:0.28:525
chr16	2028832	rs35637038	T	G	667.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:55,30:0.35:85
chr16	2029152	rs12927376	G	A	75.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.851;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=9.304;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.99;ReadPosRankSum=1.145;SOR=0.042;set=HC	GT:AD:AF:DP	0/1:12,7:0.37:19
chr16	2029412	rs12928922	C	A	2076.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.889;ClippingRankSum=0.000;DB;DP=439;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.76;ReadPosRankSum=-0.367;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:309,127:0.29:436
chr16	2029723	rs12929367	C	T	237.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.704;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=6.927;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.72;ReadPosRankSum=0.703;SOR=0.167;set=HC	GT:AD:AF:DP	0/1:49,15:0.23:64
chr16	2029788	rs12933767	T	C	364.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:38,19:0.33:57
chr16	2030127	rs61729118	G	A	829.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:12,38:0.76:50
chr16	2030863	rs138808107	ATGGGAGGCAGTCCAG	A	3692.73	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:34,92:0.73:126
chr16	2034137	rs56119017	C	T	236.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:7,10:0.59:17
chr16	2034661	rs2075812	T	C	3994.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:1,146:0.99:147
chr16	2035762	rs72766613	T	C	1545.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:32,61:0.66:93
chr16	2035784	rs72766615	C	T	1979.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:47,83:0.64:130
chr16	2035907	rs36041021	T	C	3104.77	.	AC=1;AF=0.500;AN=2;DB;DP=489;set=Intersection	GT:AD:AF:DP	0/1:309,171:0.36:480
chr16	2035999	rs1802834	C	T	1666.77	.	AC=1;AF=0.500;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	0/1:220,96:0.30:316
chr16	2036048	rs1046495	T	C	2996.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:56,125:0.69:181
chr16	2039792	rs112521723	G	A	818.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:32,39:0.55:71
chr16	2040453	rs113235071	T	C	4032.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:104,186:0.64:290
chr16	2048796	rs1058474	C	T	2282.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:45,92:0.67:137
chr16	2048826	rs2240691	C	G	5411.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr16	2049640	rs2286469	A	G	5794.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:2,226:0.99:228
chr16	2049728	rs11248905	C	T	3416.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:81,158:0.66:239
chr16	2049849	rs12149722	T	C	3174.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:72,138:0.66:210
chr16	2049882	rs141374045	G	GTCC	3032.73	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:76,135:0.64:211
chr16	2050192	rs11556528	G	T	1648.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:52,74:0.59:126
chr16	2050346	rs3743846	A	G	1490.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.313;ClippingRankSum=0.000;DB;DP=446;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.38;ReadPosRankSum=0.052;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:331,110:0.25:441
chr16	2050917	rs142385527	C	A	363.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.412;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=1.551;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.66;ReadPosRankSum=1.696;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:22,20:0.48:42
chr16	2050951	rs8050923	TA	CG	1484.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;JOINED;set=Intersection	GT:AD:AF:DP	0/1:45,38:0.46:83
chr16	2051428	rs72766631	G	A	1152.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:176,66:0.27:242
chr16	2052340	rs61746612	G	A	1877.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:178,105:0.37:283
chr16	2053742	rs72766632	A	C	436.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:52,26:0.33:78
chr16	2053794	rs17653536	G	A	110.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:27,7:0.21:34
chr16	2059621	rs11366527	GC	G	5789.73	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr16	2059674	rs71384660	T	C	5823.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr16	2059698	rs71384661	T	G	4786.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.74;SOR=0.916;set=HC	GT:AD:AF:DP	1/1:0,107:1.00:107
chr16	2059708	rs71384662	T	G	4586.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.80;SOR=1.067;set=HC	GT:AD:AF:DP	1/1:0,98:1.00:98
chr16	2059710	rs71384663	T	G	4406.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.97;SOR=1.067;set=HC	GT:AD:AF:DP	1/1:0,98:1.00:98
chr16	2059736	rs71148116	CG	C	2463.73	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.77;SOR=1.066;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr16	2059762	rs71148117	GC	G	1289.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr16	2059778	rs71148118	GT	G	1157.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr16	2059782	rs71384664	T	C	1006.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.94;SOR=1.508;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr16	2059790	rs968417	A	C	861.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.09;SOR=1.127;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr16	2059939	rs968418	A	C	8447.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr16	2059955	rs62038790	A	G	10392.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr16	2059997	rs61742167	C	T	5867.77	.	AC=1;AF=0.500;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	0/1:157,271:0.63:428
chr16	2070200	rs11248906	G	C	370.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:48,22:0.31:70
chr16	2070327	rs3217040	G	GA	741.73	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:58,28:0.33:86
chr16	2070433	rs12921264	G	A	1383.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:137,75:0.35:212
chr16	2070568	rs2286472	A	C	3732.77	.	AC=1;AF=0.500;AN=2;DB;DP=569;set=Intersection	GT:AD:AF:DP	0/1:363,203:0.36:566
chr16	2076931	.	C	G	29	.	AC=1;AF=0.500;AN=2;BRF=0.25;FR=0.5001;HP=3;HapScore=2;MGOF=1;MMLQ=24;MQ=60.0;NF=1;NR=2;PP=29;QD=21.2570708491;SC=AAGCCACCGCCGGGTGCCCAG;SbPval=0.7;Source=Platypus;TC=6;TCF=2;TCR=4;TR=3;WE=2076939;WS=2076921;set=Platypus	GT:AD:AF:DP	0/1:3,3:0.50:6
chr16	2083358	rs11544570	A	G	214.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:9,11:0.55:20
chr16	2087460	rs12447809	G	T	1315.73	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:77,62:0.45:139
chr16	2087658	rs12445258	A	G	2834.77	.	AC=1;AF=0.500;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	0/1:197,141:0.42:338
chr16	2087785	rs34165865	T	C	1210.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:113,57:0.34:170
chr16	2088025	rs201678310	G	A	1473.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:159,81:0.34:240
chr16	2088222	rs369719523	CAG	C	57.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.710;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=3.905;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.26;ReadPosRankSum=-0.553;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:39,7:0.15:46
chr16	2088312	rs11876	C	T	400.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:66,28:0.30:94
chr16	2088401	rs150212258	AC	A	267.73	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:62,20:0.24:82
chr16	2088405	rs149481694	CCCCCCTTCCCCT	C	1817.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.770;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=27.607;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=0.692;QD=27.54;ReadPosRankSum=3.225;SOR=5.742;set=HC	GT:AD:AF:DP	0/1:20,46:0.70:66
chr16	2110571	rs2074968	C	G	1103.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:29,46:0.61:75
chr16	2110608	rs12927333	G	A	1147.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:91,56:0.38:147
chr16	2111779	rs17135764	T	C	1889.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:42,76:0.64:118
chr16	2114407	rs34012042	C	T	706.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:98,40:0.29:138
chr16	2115506	rs45517185	C	T	1010.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:147,62:0.30:209
chr16	2125788	rs13331451	C	T	1947.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.396;ClippingRankSum=0.000;DB;DP=433;ExcessHet=3.0103;FS=1.234;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.51;ReadPosRankSum=0.458;SOR=0.842;set=HC	GT:AD:AF:DP	0/1:308,124:0.29:432
chr16	2125834	rs13337626	T	C	2491.77	.	AC=1;AF=0.500;AN=2;DB;DP=579;set=Intersection	GT:AD:AF:DP	0/1:417,159:0.28:576
chr16	2125937	rs1800715	C	G	1699.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.437;ClippingRankSum=0.000;DB;DP=373;ExcessHet=3.0103;FS=0.420;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.70;ReadPosRankSum=1.973;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:256,106:0.29:362
chr16	2129045	rs45517277	G	A	3622.77	.	AC=1;AF=0.500;AN=2;DB;DP=517;set=Intersection	GT:AD:AF:DP	0/1:316,195:0.38:511
chr16	2138218	rs1800718	A	C	2853.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.434;ClippingRankSum=0.000;DB;DP=685;ExcessHet=3.0103;FS=0.597;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.18;ReadPosRankSum=-0.047;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:504,178:0.26:682
chr16	2138269	rs1748	T	C	2989.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.467;ClippingRankSum=0.000;DB;DP=644;ExcessHet=3.0103;FS=0.581;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.67;ReadPosRankSum=-0.373;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:462,178:0.28:640
chr16	2138584	rs1051771	G	C	2515.77	.	AC=1;AF=0.500;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	0/1:244,139:0.36:383
chr16	2138670	rs36032671	TAA	T	2072.73	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:78,56:0.42:134
chr16	2140010	rs7203729	A	G	2686.77	.	AC=1;AF=0.500;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	0/1:261,146:0.36:407
chr16	2140321	rs79899502	G	A	4788.77	.	AC=1;AF=0.500;AN=2;DB;DP=783;set=Intersection	GT:AD:AF:DP	0/1:498,272:0.35:770
chr16	2140454	rs3087632	T	C	2012.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:199,104:0.34:303
chr16	2140554	rs3209986	G	A	1467.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:135,72:0.35:207
chr16	2140680	rs10960	T	C	1812.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:184,98:0.35:282
chr16	2141343	.	A	G	156	.	AC=1;AF=0.500;AN=2;BRF=0.5;FR=0.5000;HP=2;HapScore=4;MGOF=46;MMLQ=24;MQ=59.21;NF=3;NR=3;PP=156;QD=31.7952020912;SC=GCGAGGGGTGAGACGCTGCCG;SbPval=0.49;Source=Platypus;TC=17;TCF=7;TCR=10;TR=6;WE=2141351;WS=2141320;set=Platypus	GT:AD:AF:DP	1/0:11,6:0.35:17
chr16	2141395	.	GC	AG	297	.	AC=1;AF=0.500;AN=2;BRF=0.37;FR=0.5000;HP=1;HapScore=2;MGOF=33;MMLQ=24;MQ=59.45;NF=5;NR=5;PP=297;QD=35.0467874862;SC=CCGGTGGGAGGCGCGGGGTCT;SbPval=0.48;Source=Platypus;TC=25;TCF=14;TCR=11;TR=10;WE=2141404;WS=2141385;set=Platypus	GT:AD:AF:DP	1/0:15,10:0.40:25
chr16	2142353	rs12918803	G	A	480.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:25,20:0.44:45
chr16	2144176	rs34197769	G	A	3688.77	.	AC=1;AF=0.500;AN=2;DB;DP=495;set=Intersection	GT:AD:AF:DP	0/1:293,195:0.40:488
chr16	2144299	rs34123233	T	G	927.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:72,44:0.38:116
chr16	2152651	rs9928278	T	C	276.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:14,13:0.48:27
chr16	2159405	rs2575313	C	T	281.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:29,16:0.36:45
chr16	2159996	rs9935526	G	A	143.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:31,11:0.26:42
chr16	2160503	rs71385734	T	G	538.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:120,37:0.24:157
chr16	2201270	rs36234	G	C	782.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:10,35:0.78:45
chr16	2203456	rs26931	T	C	7717.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr16	2216073	rs8062006	G	C	862.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:46,34:0.42:80
chr16	2221157	rs13331284	T	C	709.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:74,35:0.32:109
chr16	2222598	rs187643207	C	T	232.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.740;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=2.466;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.08;ReadPosRankSum=-0.027;SOR=1.135;set=HC	GT:AD:AF:DP	0/1:39,18:0.32:57
chr16	2225823	rs12921326	G	A	2670.77	.	AC=1;AF=0.500;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	0/1:215,138:0.39:353
chr16	2233565	rs889495	T	C	1432.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr16	2238931	rs11860560	G	A	2898.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr16	2255763	rs12922719	A	C	1812.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr16	2255804	rs3214648	TG	T	2423.73	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr16	2256047	rs3217423	AC	A	6061.73	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr16	2256326	rs27699	C	T	15625.77	.	AC=2;AF=1.00;AN=2;DB;DP=575;set=Intersection	GT:AD:AF:DP	1/1:0,567:1.00:567
chr16	2256461	rs26863	C	G	17023.77	.	AC=2;AF=1.00;AN=2;DB;DP=629;set=Intersection	GT:AD:AF:DP	1/1:2,620:1.00:622
chr16	2257105	rs26862	C	G	6739.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr16	2259766	rs26858	A	G	1265.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr16	2259865	rs25852	C	G	1495.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr16	2260567	rs26857	C	T	6694.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr16	2260612	rs26856	T	C	7226.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr16	2260935	rs26855	G	A	1401.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:25,59:0.70:84
chr16	2263836	rs116977380	C	T	1978.77	.	AC=1;AF=0.500;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	0/1:246,113:0.31:359
chr16	2282256	rs26839	G	A	7149.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr16	2285357	rs26840	C	T	6605.73	.	AC=1;AF=0.500;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	0/1:134,286:0.68:420
chr16	2288224	rs27620	G	A	1391.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:31,55:0.64:86
chr16	2293296	rs2071640	G	T	1133.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:166,67:0.29:233
chr16	2296851	rs3803695	A	G	365.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:39,19:0.33:58
chr16	2296878	rs146513443	G	A	393.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:50,23:0.32:73
chr16	2301520	rs11541763	G	C	1397.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:202,85:0.30:287
chr16	2317777	rs11646649	C	G	175.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.981;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=25.11;ReadPosRankSum=-0.000;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:2,5:0.71:7
chr16	2317777	.	CT	GG	47	.	AC=1;AF=0.500;AN=2;BRF=0.55;FR=0.5000;HP=1;HapScore=2;MGOF=0;MMLQ=20;MQ=60.0;NF=1;NR=2;PP=47;QD=33.4892916207;SC=GCGCTCCCCGCTGGTCTGAGT;SbPval=0.48;Source=Platypus;TC=5;TCF=1;TCR=4;TR=3;WE=2317786;WS=2317767;set=Platypus	GT:AD:AF:DP	0/1:2,3:0.60:5
chr16	2317778	rs11642797	T	G	175.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.180;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=25.11;ReadPosRankSum=-0.000;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:2,5:0.71:7
chr16	2318170	rs143373048	TA	T	9605.73	.	AC=1;AF=0.500;AN=2;DB;DP=492;set=Intersection	GT:AD:AF:DP	0/1:167,316:0.65:483
chr16	2318327	rs161430	C	G	612.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:57,29:0.34:86
chr16	2328790	rs150928	G	A	1209.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:22,48:0.69:70
chr16	2331430	rs149532	A	G	6983.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr16	2334554	rs1183064	A	T	769.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:14,29:0.67:43
chr16	2338363	rs313908	C	G	2066.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:33,83:0.72:116
chr16	2339714	rs323017	T	C	113.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.375;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.60;ReadPosRankSum=0.020;SOR=0.575;set=HC	GT:AD:AF:DP	0/1:57,14:0.20:71
chr16	2348528	rs323043	G	C	789.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:70,43:0.38:113
chr16	2349371	rs170447	T	C	5027.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr16	2358313	rs323074	C	T	220.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:25,12:0.32:37
chr16	2367509	rs323066	G	T	954.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.016;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=3.924;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.52;ReadPosRankSum=-0.086;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:123,50:0.29:173
chr16	2369485	rs5815117	C	CA	678.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.837;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=1.435;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.34;ReadPosRankSum=-0.088;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:11,44:0.80:55
chr16	2373786	rs323060	C	A	970.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr16	2375961	rs46725	C	T	1022.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr16	2479712	rs13337091	A	C	47.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.309;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.78;ReadPosRankSum=-0.616;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:6,4:0.40:10
chr16	2480948	rs12923030	A	G	837.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:13,34:0.72:47
chr16	2485620	.	ACACACACACATATATATG	A	849	.	AC=1;AF=0.500;AN=2;BRF=0.16;FR=0.5000;HP=2;HapScore=4;MGOF=126;MMLQ=25;MQ=58.92;NF=14;NR=5;PP=849;QD=45.1578947368;SC=ATATGCACACACACACACACA;SbPval=0.71;Source=Platypus;TC=26;TCF=18;TCR=8;TR=19;WE=2485655;WS=2485617;set=Platypus	GT:AD:AF:DP	0/1:7,19:0.73:26
chr16	2485667	.	CATATATAT	C	962.73	.	AC=2;AF=1.00;AN=2;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=35.66;SOR=1.739;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr16	2485677	.	T	C	433.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.625;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.69;ReadPosRankSum=-0.212;SOR=1.127;set=HC	GT:AD:AF:DP	0/1:3,17:0.85:20
chr16	2485896	rs12928789	A	G	689.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:98,43:0.30:141
chr16	2486998	rs12921396	A	T	726.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:62,33:0.35:95
chr16	2487012	rs34456414	C	CT	1099.73	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:76,35:0.32:111
chr16	2488211	rs12926008	T	C	1122.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:125,65:0.34:190
chr16	2489533	rs28647184	T	G	410.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:21,18:0.46:39
chr16	2498828	rs28417759	A	G	1336.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:216,95:0.31:311
chr16	2498849	rs28670436	G	A	1831.77	.	AC=1;AF=0.500;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	0/1:273,123:0.31:396
chr16	2499011	rs8060813	T	C	1486.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.410;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=3.076;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.74;ReadPosRankSum=0.480;SOR=0.962;set=HC	GT:AD:AF:DP	0/1:126,66:0.34:192
chr16	2499786	.	G	GTCCCCTCCA	1431.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.239;ClippingRankSum=0.000;DP=148;ExcessHet=3.0103;FS=2.266;MLEAC=1;MLEAF=0.500;MQ=61.16;MQRankSum=7.403;QD=10.08;ReadPosRankSum=-0.076;SOR=1.039;set=HC	GT:AD:AF:DP	0/1:107,35:0.25:142
chr16	2570608	.	CGGGCGGGGTGCAGGGTGCGGGGCCGGGGACA	C	65.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.356;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.68;MQRankSum=0.693;QD=3.87;ReadPosRankSum=-1.195;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:13,4:0.24:17
chr16	2570639	.	A	C	166	.	AC=1;AF=0.500;AN=2;BRF=0.49;FR=0.5000;HP=3;HapScore=2;MGOF=27;MMLQ=20;MQ=50.49;NF=11;NR=4;PP=166;QD=13.3847475031;SC=GGCCGGGGACAGGGCGGGGTG;SbPval=0.94;Source=Platypus;TC=29;TCF=16;TCR=13;TR=15;WE=2570647;WS=2570629;set=Platypus	GT:AD:AF:DP	0/1:14,15:0.52:29
chr16	2581111	rs139815200	C	T	624.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:15,26:0.63:41
chr16	2608001	rs77373540	G	A	4423.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.819;ClippingRankSum=0.000;DB;DP=845;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.32;MQRankSum=-2.513;QD=5.27;ReadPosRankSum=-0.320;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:570,269:0.32:839
chr16	2645965	rs1005273	G	A	627.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr16	2747857	rs3094475	C	T	468.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:33,24:0.42:57
chr16	2748063	rs3094474	C	T	472.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:66,28:0.30:94
chr16	2749195	rs3094473	A	G	11664.77	.	AC=2;AF=1.00;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	1/1:0,445:1.00:445
chr16	2763382	rs191263819	A	G	1887.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:53,76:0.59:129
chr16	2802684	rs2240146	T	C	681.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr16	2808363	rs3094778	C	T	267.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:29,15:0.34:44
chr16	2810623	.	T	G	22	.	AC=1;AF=0.500;AN=2;BRF=0.29;FR=0.5000;HP=2;HapScore=2;MGOF=2;MMLQ=24;MQ=60.0;NF=0;NR=5;PP=22;QD=11.3542425094;SC=TTTTCCTGCATTTCTCTCCTA;SbPval=1.0;Source=Platypus;TC=27;TCF=1;TCR=26;TR=5;WE=2810631;WS=2810613;set=Platypus	GT:AD:AF:DP	1/0:22,5:0.19:27
chr16	2812647	rs2240142	C	T	6261.77	.	AC=1;AF=0.500;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	0/1:153,270:0.64:423
chr16	2812890	rs2240141	A	G	2092.77	.	AC=1;AF=0.500;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	0/1:267,115:0.30:382
chr16	2812939	rs2240140	C	A	2358.77	.	AC=1;AF=0.500;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	0/1:266,126:0.32:392
chr16	2814162	rs3094775	G	A	1205.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:162,68:0.30:230
chr16	2815237	rs3094773	A	C	9729.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	1/1:0,353:1.00:353
chr16	2816519	rs138447860	G	A	8536.77	.	AC=1;AF=0.500;AN=2;DB;DP=594;set=Intersection	GT:AD:AF:DP	0/1:217,368:0.63:585
chr16	2818161	rs2301802	T	C	1754.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:143,85:0.37:228
chr16	2818704	rs3094792	T	G	1781.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.333;ClippingRankSum=0.000;DB;DP=413;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.37;ReadPosRankSum=-1.540;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:293,115:0.28:408
chr16	2820882	rs1050134	G	T	1978.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:55,91:0.62:146
chr16	2821525	rs4036	G	A	3918.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:108,177:0.62:285
chr16	2822174	rs2285877	G	A	4108.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:73,179:0.71:252
chr16	2825594	rs3094774	A	G	751.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:52,41:0.44:93
chr16	2834826	rs12931183	A	G	1351.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.226;ClippingRankSum=0.000;DB;DP=271;ExcessHet=3.0103;FS=1.017;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.06;ReadPosRankSum=0.944;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:186,81:0.30:267
chr16	2835189	rs12599918	G	A	1604.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:113,83:0.42:196
chr16	2836027	rs7195287	T	G	2413.77	.	AC=1;AF=0.500;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	0/1:226,126:0.36:352
chr16	2836271	rs11643898	C	G	700.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:70,36:0.34:106
chr16	2837592	rs34341809	T	G	2219.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.908;ClippingRankSum=0.000;DB;DP=257;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.06;ReadPosRankSum=-0.170;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:174,71:0.29:245
chr16	2837603	rs11076829	C	T	2036.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.577;ClippingRankSum=0.000;DB;DP=211;ExcessHet=3.0103;FS=2.062;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.03;ReadPosRankSum=-1.114;SOR=0.865;set=HC	GT:AD:AF:DP	0/1:143,60:0.30:203
chr16	2854907	rs2015682	C	T	843.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.796;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=2.941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.54;ReadPosRankSum=1.302;SOR=0.487;set=HC	GT:AD:AF:DP	0/1:129,57:0.31:186
chr16	2867450	rs71386691	G	C	910.94	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:5,36:0.88:41
chr16	2867530	rs111876704	GA	G	100.86	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.524;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.13;MQRankSum=0.253;QD=20.17;ReadPosRankSum=-0.000;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:1,4:0.80:5
chr16	2871121	rs11076844	T	C	5215.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:2,182:0.99:184
chr16	2871555	rs10641	G	A	6918.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr16	2880614	rs2190809	T	C	2660.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr16	2880870	rs2240614	G	C	725.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr16	2882180	rs182445382	C	T	656.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:23,28:0.55:51
chr16	2882197	rs12373	G	T	1120.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr16	2891418	rs12596044	C	G	656.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:6,29:0.83:35
chr16	2891540	rs11859372	C	G	3206.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:38,128:0.77:166
chr16	2891635	rs11860210	C	G	5301.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:103,227:0.69:330
chr16	2892370	rs3810801	C	A	3318.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:71,149:0.68:220
chr16	2903047	rs1054912	G	C	1992.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:36,73:0.67:109
chr16	2903081	rs3743944	G	A	3216.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:66,132:0.67:198
chr16	2903845	rs2074294	G	T	2068.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:40,85:0.68:125
chr16	2906225	rs138580039	G	A	3054.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:60,138:0.70:198
chr16	2946433	rs2285824	C	T	902.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:63,40:0.39:103
chr16	2946541	rs142111061	G	A	4644.77	.	AC=1;AF=0.500;AN=2;DB;DP=739;set=Intersection	GT:AD:AF:DP	0/1:481,253:0.34:734
chr16	2949248	rs7281	T	C	1661.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.559;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.788;QD=13.19;ReadPosRankSum=-0.510;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:47,79:0.63:126
chr16	2949269	rs34090411	C	CTT	344.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.490;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=0.000;QD=7.83;ReadPosRankSum=1.383;SOR=0.874;set=HC	GT:AD:AF:DP	0/1:21,23:0.52:44
chr16	2972534	rs11865663	C	A	396.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:34,21:0.38:55
chr16	2973249	rs11642228	T	A	1300.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr16	2980361	rs11643417	A	G	8307.77	.	AC=1;AF=0.500;AN=2;DB;DP=562;set=Intersection	GT:AD:AF:DP	0/1:197,365:0.65:562
chr16	2983516	rs61747747	C	T	2960.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:79,129:0.62:208
chr16	2984542	rs76530521	C	T	722.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:16,28:0.64:44
chr16	2986233	rs9933986	G	T	607.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:11,23:0.68:34
chr16	2986289	rs9921808	C	G	2021.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:40,81:0.67:121
chr16	2986323	rs9928222	T	C	3331.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:71,142:0.67:213
chr16	2986840	rs2074358	G	C	2087.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:236,117:0.33:353
chr16	2986894	rs113530410	G	T	4230.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:82,180:0.69:262
chr16	2987002	rs2074357	C	T	554.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:77,31:0.29:108
chr16	2987074	rs140936158	G	GCTCTGAGAGCTGGTGTCCGCTGCTCCTCCCCTCCCATTTCTC	1722.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.407;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=47.85;ReadPosRankSum=-0.725;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:2,34:0.94:36
chr16	2987315	rs61747749	G	A	1235.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:21,56:0.73:77
chr16	2988507	rs12373088	T	C	2165.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:59,87:0.60:146
chr16	2989884	rs1060485	T	C	1527.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:30,68:0.69:98
chr16	2989905	rs1060484	G	T	1954.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:32,86:0.73:118
chr16	2998629	rs8050688	T	G	1141.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:130,67:0.34:197
chr16	3016885	rs58462745	A	G	7046.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr16	3017124	rs11641195	C	A	2360.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:49,98:0.67:147
chr16	3021116	rs4786365	T	C	3028.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:83,139:0.63:222
chr16	3024188	rs2074528	T	C	2417.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:65,104:0.62:169
chr16	3065635	rs138377300	C	G	3744.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:80,150:0.65:230
chr16	3065924	rs2269911	G	A	1617.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.173;ClippingRankSum=0.000;DB;DP=358;ExcessHet=3.0103;FS=0.895;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.000;QD=4.57;ReadPosRankSum=-2.735;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:255,99:0.28:354
chr16	3070628	rs74758164	C	T	1241.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:21,54:0.72:75
chr16	3071420	rs2232798	T	A	559.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:96,38:0.28:134
chr16	3073240	rs10508	G	T	614.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:53,35:0.40:88
chr16	3074426	rs56708449	G	C	2267.77	.	AC=1;AF=0.500;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	0/1:294,138:0.32:432
chr16	3075999	rs2245000	C	G	3116.77	.	AC=1;AF=0.500;AN=2;DB;DP=565;set=Intersection	GT:AD:AF:DP	0/1:392,169:0.30:561
chr16	3077710	.	CTT	C	593.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.157;ClippingRankSum=0.000;DP=100;ExcessHet=3.0103;FS=1.194;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=1.432;QD=7.15;ReadPosRankSum=-1.314;SOR=0.456;set=HC	GT:AD:AF:DP	0/1:48,35:0.42:83
chr16	3078165	rs12448103	A	G	1580.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:179,94:0.34:273
chr16	3078544	rs2079244	T	G	771.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:67,36:0.35:103
chr16	3078616	rs5815143	CATT	C	2407.73	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:154,71:0.32:225
chr16	3097074	rs909408	C	T	76.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:24,8:0.25:32
chr16	3097568	rs3743937	C	A	347.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:38,21:0.36:59
chr16	3097596	rs3743936	T	A	190.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:26,12:0.32:38
chr16	3106026	rs3888711	G	A	262.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.793;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=4.481;MLEAC=1;MLEAF=0.500;MQ=59.48;MQRankSum=-0.714;QD=13.14;ReadPosRankSum=-0.963;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:8,12:0.60:20
chr16	3106994	rs1064948	A	T	2076.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr16	3108127	rs117500319	G	A	2946.77	.	AC=1;AF=0.500;AN=2;DB;DP=451;set=Intersection	GT:AD:AF:DP	0/1:286,160:0.36:446
chr16	3117272	.	CTGTG	C,CTG	1039.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.26;QD=30.58;SOR=2.226;set=HC	GT:AD:AF:DP	1/2:0,22,12:0.65,0.35:34
chr16	3117937	rs2239303	G	A	2690.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:78,123:0.61:201
chr16	3118865	rs12934561	T	C	730.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:17,27:0.61:44
chr16	3119020	rs371244098	A	G	84.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.710;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=17.798;MLEAC=1;MLEAF=0.500;MQ=43.60;MQRankSum=0.730;QD=1.05;ReadPosRankSum=-2.554;SOR=1.222;set=HC	GT:AD:AF:DP	0/1:69,12:0.15:81
chr16	3119167	rs34184287	T	C	1064.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.144;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=0.636;MLEAC=1;MLEAF=0.500;MQ=49.65;MQRankSum=-0.871;QD=6.49;ReadPosRankSum=-0.111;SOR=0.777;set=HC	GT:AD:AF:DP	0/1:109,55:0.34:164
chr16	3119297	rs71818662	C	CG	1359.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.278;ClippingRankSum=0.000;DB;DP=376;ExcessHet=3.0103;FS=11.612;MLEAC=1;MLEAF=0.500;MQ=57.68;MQRankSum=-16.889;QD=4.02;ReadPosRankSum=3.531;SOR=1.294;set=HC	GT:AD:AF:DP	0/1:256,82:0.24:338
chr16	3119304	rs2981599	A	G	2794.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.389;ClippingRankSum=0.000;DB;DP=363;ExcessHet=3.0103;FS=10.477;MLEAC=1;MLEAF=0.500;MQ=57.52;MQRankSum=-16.066;QD=7.70;ReadPosRankSum=0.970;SOR=1.195;set=HC	GT:AD:AF:DP	0/1:272,91:0.25:363
chr16	3131566	rs2741927	G	T	190.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.484;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.18;MQRankSum=1.737;QD=5.16;ReadPosRankSum=1.963;SOR=0.929;set=HC	GT:AD:AF:DP	0/1:25,12:0.32:37
chr16	3131663	rs4247354	A	G	140.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.607;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=18.364;MLEAC=1;MLEAF=0.500;MQ=44.72;MQRankSum=-3.680;QD=4.02;ReadPosRankSum=0.077;SOR=4.332;set=HC	GT:AD:AF:DP	0/1:26,9:0.26:35
chr16	3131895	rs117921794	T	C	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.668;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=27.184;MLEAC=1;MLEAF=0.500;MQ=56.71;MQRankSum=-6.606;QD=0.36;ReadPosRankSum=-2.338;SOR=4.804;set=HC	GT:AD:AF:DP	0/1:84,10:0.11:94
chr16	3131937	rs191732434	A	C	782.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:89,25:0.22:114
chr16	3131940	rs58826170	C	CGG	808.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.249;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=21.465;MLEAC=1;MLEAF=0.500;MQ=56.13;MQRankSum=-10.509;QD=6.91;ReadPosRankSum=-0.620;SOR=2.276;set=HC	GT:AD:AF:DP	0/1:91,26:0.22:117
chr16	3141713	rs12935803	G	C	2155.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:56,101:0.64:157
chr16	3142463	rs3810807	A	G	5352.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:105,229:0.69:334
chr16	3165425	rs909410	A	G	2130.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:71,103:0.59:174
chr16	3166618	rs4785928	C	G	840.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.090;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.16;ReadPosRankSum=-0.192;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:18,31:0.63:49
chr16	3191356	rs2735537	G	A	1595.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:28,72:0.72:100
chr16	3197623	rs2735507	C	T	2111.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:31,87:0.74:118
chr16	3199118	rs2238385	C	T	1743.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:42,71:0.63:113
chr16	3199713	rs2735514	C	T	4078.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:97,193:0.67:290
chr16	3254418	rs61731432	C	G	8248.77	.	AC=1;AF=0.500;AN=2;DB;DP=571;set=Intersection	GT:AD:AF:DP	0/1:204,364:0.64:568
chr16	3254470	rs1834026	T	C	22545.77	.	AC=2;AF=1.00;AN=2;DB;DP=836;MQ=59.99;set=Intersection	GT:AD:AF:DP	1/1:4,829:1.00:833
chr16	3254972	rs2075851	T	C	11339.77	.	AC=2;AF=1.00;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	1/1:0,395:1.00:395
chr16	3265854	rs61743522	G	A	13877.77	.	AC=1;AF=0.500;AN=2;DB;DP=998;set=Intersection	GT:AD:AF:DP	0/1:363,627:0.63:990
chr16	3266071	rs2550401	A	G	17518.77	.	AC=2;AF=1.00;AN=2;DB;DP=624;set=Intersection	GT:AD:AF:DP	1/1:2,610:1.00:612
chr16	3266552	rs2741916	G	A	3529.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr16	3282605	rs2075852	T	C	8737.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr16	3294154	rs3974658	GT	G	3518.73	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:27,204:0.88:231
chr16	3296429	rs224204	G	A	1533.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr16	3296616	rs224205	C	T	3851.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr16	3297073	rs224206	A	G	12242.77	.	AC=2;AF=1.00;AN=2;DB;DP=473;set=Intersection	GT:AD:AF:DP	1/1:0,471:1.00:471
chr16	3297175	rs224207	T	C	18284.77	.	AC=2;AF=1.00;AN=2;DB;DP=421;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.64;SOR=0.966;set=HC	GT:AD:AF:DP	1/1:0,419:1.00:419
chr16	3297181	rs224208	C	T	18043.77	.	AC=2;AF=1.00;AN=2;DB;DP=401;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.34;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,398:1.00:398
chr16	3298642	rs224211	G	A	2898.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr16	3298865	rs224212	T	C	4856.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr16	3299749	rs224213	G	A	10451.77	.	AC=2;AF=1.00;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	1/1:2,402:1.00:404
chr16	3302051	rs33924616	TA	T	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.116;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=1.518;QD=1.22;ReadPosRankSum=-1.058;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:21,10:0.32:31
chr16	3405875	rs1009429	T	C	881.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr16	3405986	rs1218762	G	A	898.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.256;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.03;ReadPosRankSum=0.794;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:100,49:0.33:149
chr16	3405994	rs1228348	A	G	5608.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr16	3406387	rs1218763	C	G	14003.77	.	AC=2;AF=1.00;AN=2;DB;DP=506;set=Intersection	GT:AD:AF:DP	1/1:0,499:1.00:499
chr16	3406516	rs11643487	A	G	11021.77	.	AC=2;AF=1.00;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	1/1:0,402:1.00:402
chr16	3406626	rs11648783	G	A	2197.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:147,105:0.42:252
chr16	3406756	rs142397376	GT	G	8122.73	.	AC=1;AF=0.500;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	0/1:129,250:0.66:379
chr16	3434966	rs27231	T	C	737.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.481;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=2.673;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.16;ReadPosRankSum=2.239;SOR=0.453;set=HC	GT:AD:AF:DP	0/1:63,40:0.39:103
chr16	3438743	rs147474682	ATGT	A	1752.73	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:23,45:0.66:68
chr16	3440394	rs27237	A	G	4184.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr16	3441697	rs7204842	A	C,AC	3583.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.527;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=4.445;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.97;MQRankSum=0.000;QD=47.78;ReadPosRankSum=1.679;SOR=1.277;set=HC	GT:AD:AF:DP	1/2:1,36,38:0.48,0.51:75
chr16	3445239	rs1149492	A	G	898.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.896;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.29;ReadPosRankSum=1.000;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:117,53:0.31:170
chr16	3446340	rs78753562	T	A	10776.77	.	AC=1;AF=0.500;AN=2;DB;DP=744;set=Intersection	GT:AD:AF:DP	0/1:244,496:0.67:740
chr16	3447282	rs27241	C	G	2283.77	.	AC=1;AF=0.500;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	0/1:242,118:0.33:360
chr16	3452193	rs37811	T	G	6656.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr16	3452453	rs56903674	C	CT	965.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.110;ClippingRankSum=0.000;DB;DP=318;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.49;ReadPosRankSum=0.369;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:124,91:0.42:215
chr16	3455079	rs37813	T	C	1938.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr16	3458219	rs37819	C	T	301.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr16	3458609	rs11640177	G	A	2090.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:214,115:0.35:329
chr16	3487201	rs2270492	G	A	5671.77	.	AC=1;AF=0.500;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	0/1:114,250:0.69:364
chr16	3490638	rs118186249	A	T	730.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:8,30:0.79:38
chr16	3490879	rs2270493	T	A	1883.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:41,84:0.67:125
chr16	3490922	rs2270494	G	C	516.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:45,25:0.36:70
chr16	3493878	rs75630518	G	C	1294.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.780;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=1.663;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.95;ReadPosRankSum=-0.604;SOR=0.943;set=HC	GT:AD:AF:DP	0/1:41,59:0.59:100
chr16	3498318	rs75045974	A	G	630.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:12,26:0.68:38
chr16	3498499	rs61748354	G	A	2257.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:60,101:0.63:161
chr16	3533577	rs1137454	C	G	2181.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:153,106:0.41:259
chr16	3534654	rs4785935	G	A	3126.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:65,131:0.67:196
chr16	3534892	rs13740	G	A	3882.77	.	AC=1;AF=0.500;AN=2;DB;DP=695;set=Intersection	GT:AD:AF:DP	0/1:472,215:0.31:687
chr16	3535116	rs4785936	T	C	8877.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr16	3535540	rs2240075	G	A	2718.77	.	AC=1;AF=0.500;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	0/1:272,150:0.36:422
chr16	3535573	rs201536634	CT	C	8179.73	.	AC=1;AF=0.500;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	0/1:140,243:0.63:383
chr16	3544040	rs56793723	G	T	1197.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:29,56:0.66:85
chr16	3550977	rs2301762	C	G	575.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:84,36:0.30:120
chr16	3583173	rs3751837	C	T	833.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.339;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=0.605;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.13;ReadPosRankSum=-0.929;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:150,52:0.26:202
chr16	3586230	rs9790	C	T	2141.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:33,96:0.74:129
chr16	3594162	rs60164526	GA	G	192.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.277;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.05;ReadPosRankSum=1.953;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:60,34:0.36:94
chr16	3599655	rs12448257	G	A	1174.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:135,68:0.33:203
chr16	3602227	rs56070390	AG	A	6012.73	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr16	3605750	rs61266511	C	CT	123.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.424;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=2.197;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.28;ReadPosRankSum=0.492;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:7,10:0.59:17
chr16	3605924	rs146562000	A	AAAAT	1130.73	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:14,29:0.67:43
chr16	3611610	rs8050566	C	T	3451.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr16	3613126	rs12445430	C	T	1019.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:77,49:0.39:126
chr16	3613150	rs8044743	A	G	4640.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr16	3627358	rs758747	C	T	60.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:20,5:0.20:25
chr16	3639139	rs3810812	A	G	8197.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr16	3639827	rs3810813	G	A	2468.77	.	AC=1;AF=0.500;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	0/1:288,134:0.32:422
chr16	3656482	rs8061528	C	T	1875.77	.	AC=1;AF=0.500;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	0/1:282,111:0.28:393
chr16	3707409	rs1799892	G	C	830.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:103,49:0.32:152
chr16	3707747	rs1053874	G	A	1200.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:162,73:0.31:235
chr16	3708193	rs1059857	G	A	2363.77	.	AC=1;AF=0.500;AN=2;DB;DP=503;MQ=60.04;set=Intersection	GT:AD:AF:DP	0/1:348,146:0.30:494
chr16	3708282	rs35081909	AT	A,ATT	1816.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.173;ClippingRankSum=0.000;DB;DP=247;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.09;MQRankSum=0.606;QD=10.69;ReadPosRankSum=0.987;SOR=0.763;set=HC	GT:AD:AF:DP	1/2:22,106,42:0.62,0.25:170
chr16	3708968	.	A	ACTGT	8295.73	.	AC=1;AF=0.500;AN=2;DP=442;MQ=60.07;set=Intersection	GT:AD:AF:DP	0/1:142,211:0.60:353
chr16	3724465	rs13926	G	C	3239.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:76,150:0.66:226
chr16	3726160	rs8050400	A	G	7222.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr16	3738887	rs2072379	C	T	2195.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr16	3738961	rs2072380	T	G	994.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:147,62:0.30:209
chr16	3741122	rs8054755	C	T	405.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:53,22:0.29:75
chr16	3811556	rs886528	A	G	15142.77	.	AC=2;AF=1.00;AN=2;DB;DP=563;set=Intersection	GT:AD:AF:DP	1/1:0,559:1.00:559
chr16	4016049	rs11543317	G	A	7658.77	.	AC=1;AF=0.500;AN=2;DB;DP=465;set=Intersection	GT:AD:AF:DP	0/1:135,323:0.71:458
chr16	4016377	rs61731445	T	C	12233.77	.	AC=1;AF=0.500;AN=2;DB;DP=849;set=Intersection	GT:AD:AF:DP	0/1:318,517:0.62:835
chr16	4016676	rs2230742	A	G	5567.77	.	AC=1;AF=0.500;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	0/1:170,250:0.60:420
chr16	4027423	rs2072346	C	T	694.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:18,26:0.59:44
chr16	4027749	rs2601774	A	G	550.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:8,22:0.73:30
chr16	4039141	rs2072341	A	G	6840.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr16	4042449	rs2239307	C	T	77.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:23,6:0.21:29
chr16	4043292	rs2239309	C	G	492.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:38,24:0.39:62
chr16	4165257	rs147045155	C	A	1032.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:112,53:0.32:165
chr16	4165432	rs2530898	T	C	619.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr16	4242093	rs8051399	C	T	1320.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:28,52:0.65:80
chr16	4245393	rs11076822	T	C	659.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:8,24:0.75:32
chr16	4245426	rs11076823	C	T	668.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:18,25:0.58:43
chr16	4245693	rs10852643	A	G	8461.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:2,308:0.99:310
chr16	4253034	rs17136872	T	C	269.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:56,16:0.22:72
chr16	4253130	rs56280975	C	T	10498.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.713;ClippingRankSum=0.000;DB;DP=320;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=32.91;ReadPosRankSum=0.391;SOR=0.377;set=HC	GT:AD:AF:DP	1/1:1,318:1.00:319
chr16	4253130	.	CG	TA,TG	2847	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.46;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=4;MMLQ=20;MQ=59.97;NF=34,129;NR=18,81;PP=480,2847;QD=10.2589975935;SC=GCGCCGTACCCGTAATCTCAA;SbPval=0.71;Source=Platypus;TC=215;TCF=132;TCR=83;TR=52,210;WE=4253139;WS=4253120;set=Platypus	GT:AF:DP	0/1:0.24:215
chr16	4253131	rs35383355	G	A	1608.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.094;ClippingRankSum=0.000;DB;DP=327;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.93;ReadPosRankSum=-1.671;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:227,99:0.30:326
chr16	4254523	rs60137128	C	T	1901.77	.	AC=1;AF=0.500;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	0/1:244,109:0.31:353
chr16	4254725	rs8054937	A	G	1616.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:146,82:0.36:228
chr16	4254758	rs62039298	A	T	1071.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:79,50:0.39:129
chr16	4256705	rs13334805	G	A	886.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:150,56:0.27:206
chr16	4256755	rs58255304	TC	T	2096.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.109;ClippingRankSum=0.000;DB;DP=393;ExcessHet=3.0103;FS=1.380;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.43;ReadPosRankSum=-0.643;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:284,102:0.26:386
chr16	4257060	rs13334970	G	A	1809.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:192,94:0.33:286
chr16	4257281	rs9922726	A	C	7355.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.311;ClippingRankSum=0.000;DB;DP=584;ExcessHet=3.0103;FS=1.150;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.77;ReadPosRankSum=0.060;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:370,206:0.36:576
chr16	4257286	rs9924822	T	C	7395.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.799;ClippingRankSum=0.000;DB;DP=582;ExcessHet=3.0103;FS=0.540;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.91;ReadPosRankSum=0.346;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:368,205:0.36:573
chr16	4258173	rs889807	T	C	624.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:42,30:0.42:72
chr16	4386814	rs669561	T	C	18450.77	.	AC=2;AF=1.00;AN=2;DB;DP=690;set=Intersection	GT:AD:AF:DP	1/1:0,686:1.00:686
chr16	4407356	rs61391325	CT	C	94.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.126;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.12;ReadPosRankSum=-1.281;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:11,12:0.52:23
chr16	4410867	rs140995663	TCACTGCTGGCCCCACCTCTCCA	T	3515.73	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr16	4414727	rs2277852	G	A	5343.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:1,196:0.99:197
chr16	4414987	rs2277851	G	A	7447.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:4,280:0.99:284
chr16	4415410	rs3747575	G	T	5082.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:1,190:0.99:191
chr16	4415455	rs3747576	C	G	6031.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:2,221:0.99:223
chr16	4431202	rs758044	A	G	22854.77	.	AC=2;AF=1.00;AN=2;DB;DP=871;set=Intersection	GT:AD:AF:DP	1/1:3,854:1.00:857
chr16	4432029	rs3810818	A	C	14867.77	.	AC=2;AF=1.00;AN=2;DB;DP=567;set=Intersection	GT:AD:AF:DP	1/1:1,557:1.00:558
chr16	4445327	rs3747579	C	T	7329.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:2,281:0.99:283
chr16	4455675	rs3747580	G	A	3379.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr16	4475868	rs2304631	A	T	1221.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr16	4476089	rs1139652	T	C	4989.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr16	4484328	rs4785962	A	G	1534.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr16	4484396	rs1139653	A	T	6085.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:1,220:1.00:221
chr16	4484613	rs4785964	A	G	4569.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr16	4494549	rs12446640	A	G	1551.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr16	4496973	rs2304633	T	A	2292.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr16	4500544	rs2304634	C	T	7847.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr16	4516092	rs3747584	T	C	2772.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr16	4519439	rs11557236	G	A	3001.77	.	AC=1;AF=0.500;AN=2;DB;DP=499;set=Intersection	GT:AD:AF:DP	0/1:322,166:0.34:488
chr16	4519548	rs62039231	A	G	6317.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:2,222:0.99:224
chr16	4524060	rs3761680	C	A	5055.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr16	4559351	.	TA	T	59.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.214;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=1.228;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.91;ReadPosRankSum=0.909;SOR=0.906;set=HC	GT:AD:AF:DP	0/1:49,17:0.26:66
chr16	4562351	rs8129	T	C	2869.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr16	4562512	rs7665	A	G	8387.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr16	4621725	rs35531180	GA	G	4636.73	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr16	4625126	rs9673241	G	A	8658.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr16	4625164	rs76048912	C	G	4868.77	.	AC=1;AF=0.500;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	0/1:136,224:0.62:360
chr16	4641814	rs5815211	AG	A	2412.73	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr16	4649103	.	GAA	G	52.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.661;ClippingRankSum=0.000;DP=56;ExcessHet=3.0103;FS=2.900;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.08;ReadPosRankSum=1.527;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:40,9:0.18:49
chr16	4649955	rs11076843	T	C	2678.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.40;SOR=4.443;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr16	4649965	rs7403819	T	C	2722.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.54;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr16	4660342	rs841184	C	T	5210.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr16	4664412	rs138923012	T	TG	346.80	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:1,15:0.94:16
chr16	4664833	rs860889	T	G	7043.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr16	4674954	rs3747587	C	G	10650.77	.	AC=2;AF=1.00;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	1/1:0,405:1.00:405
chr16	4675116	rs1386092	G	T	6595.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr16	4700318	rs373572089	CA	C	197.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.368;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=2.349;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.75;ReadPosRankSum=0.108;SOR=0.420;set=HC	GT:AD:AF:DP	0/1:43,29:0.40:72
chr16	4714639	rs1659479	T	C	9870.77	.	AC=1;AF=0.500;AN=2;DB;DP=701;set=Intersection	GT:AD:AF:DP	0/1:248,440:0.64:688
chr16	4715012	rs3813746	C	T	1597.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:34,69:0.67:103
chr16	4718388	rs34069734	A	G	4212.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:88,189:0.68:277
chr16	4721468	rs715109	T	C	11742.77	.	AC=2;AF=1.00;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	1/1:0,441:1.00:441
chr16	4723451	rs2289314	A	G	2834.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:61,119:0.66:180
chr16	4736080	rs144808025	TTCTGGCTGCGC	T	3823.73	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr16	4736316	rs841225	C	T	7037.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr16	4738745	rs192853940	C	T	4238.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:105,193:0.65:298
chr16	4747136	rs841215	G	C	1018.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:156,59:0.27:215
chr16	4751045	rs863980	C	T	1570.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:196,91:0.32:287
chr16	4752134	rs841210	A	G	6822.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:2,265:0.99:267
chr16	4786456	rs859314	A	G	235.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:37,12:0.24:49
chr16	4787987	rs859310	G	A	991.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:93,49:0.35:142
chr16	4790059	rs111697257	C	CA	417.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.433;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.015;QD=4.80;ReadPosRankSum=0.516;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:52,35:0.40:87
chr16	4790273	rs859305	G	A	1737.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:140,88:0.39:228
chr16	4794873	rs2075469	C	T	2957.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr16	4796393	rs737700	A	G	8776.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	1/1:0,333:1.00:333
chr16	4796595	rs759988	T	C	5167.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:3,201:0.99:204
chr16	4796871	rs2341988	A	G	7389.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr16	4797226	rs759989	T	C	1570.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr16	4797457	rs17853375	C	T	8312.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:2,310:0.99:312
chr16	4801723	rs921863	G	A	2031.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr16	4802370	rs3747601	C	A	2519.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr16	4802386	rs3747602	G	T	2896.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr16	4812209	rs12599765	G	A	3636.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr16	4815425	rs4786548	T	C	3200.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr16	4815602	rs12919587	T	C	6004.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.349;ClippingRankSum=0.000;DB;DP=425;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.47;ReadPosRankSum=0.031;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:149,266:0.64:415
chr16	4815608	rs4786549	A	G	14903.77	.	AC=2;AF=1.00;AN=2;DB;DP=399;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.21;SOR=0.835;set=HC	GT:AD:AF:DP	1/1:0,390:1.00:390
chr16	4829602	rs79848476	T	C	264.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:22,14:0.39:36
chr16	4835778	.	TA	T	125.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.540;ClippingRankSum=0.000;DP=92;ExcessHet=3.0103;FS=1.161;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.55;ReadPosRankSum=1.252;SOR=1.044;set=HC	GT:AD:AF:DP	0/1:55,26:0.32:81
chr16	4861709	rs2085329	G	C	8522.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr16	4873987	rs188555979	G	A	1258.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:20,55:0.73:75
chr16	4882652	rs139379904	T	C	386.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:20,15:0.43:35
chr16	4933939	rs2037912	G	C	13315.77	.	AC=2;AF=1.00;AN=2;DB;DP=489;set=Intersection	GT:AD:AF:DP	1/1:0,477:1.00:477
chr16	4934549	rs1049208	G	A	23152.77	.	AC=2;AF=1.00;AN=2;DB;DP=547;set=Intersection	GT:AD:AF:DP	1/1:0,541:1.00:541
chr16	4934564	rs1049207	C	G	23425.77	.	AC=2;AF=1.00;AN=2;DB;DP=554;set=Intersection	GT:AD:AF:DP	1/1:0,547:1.00:547
chr16	4938160	rs2734742	T	G	3367.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr16	4938280	rs2075637	T	C	2720.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr16	4938321	rs2075636	A	T	1894.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr16	4940387	rs11644917	G	A	3991.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr16	4940809	rs2471844	A	G	9736.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	1/1:0,344:1.00:344
chr16	4940989	rs2471843	A	C	1858.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.31;SOR=1.880;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr16	4940994	rs760118	A	G	1665.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.27;SOR=1.949;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr16	4941916	.	G	C	2046.77	.	AC=1;AF=0.500;AN=2;DP=337;set=Intersection	GT:AD:AF:DP	0/1:226,104:0.32:330
chr16	4942099	rs1049205	C	T	6529.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:2,247:0.99:249
chr16	4944518	rs1876363	C	G	11742.77	.	AC=2;AF=1.00;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	1/1:0,429:1.00:429
chr16	4945221	rs12709119	A	G	8431.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr16	4947534	rs8051246	T	C	545.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr16	4948936	rs12443906	C	T	1568.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr16	4949065	rs74003566	G	A	2100.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:142,104:0.42:246
chr16	4952598	rs2048098	C	G	2171.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr16	4952627	rs79655418	A	G	421.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:41,23:0.36:64
chr16	4961003	rs8057613	A	G	3012.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr16	5009232	rs78937023	C	T	666.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:92,35:0.28:127
chr16	5009433	rs7200245	G	A	9684.77	.	AC=2;AF=1.00;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	1/1:2,366:0.99:368
chr16	5009605	rs61423624	C	G	113.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.245;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.21;ReadPosRankSum=-1.410;SOR=0.267;set=HC	GT:AD:AF:DP	0/1:20,7:0.26:27
chr16	5037498	.	T	TG	190.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.423;ClippingRankSum=0.000;DP=99;ExcessHet=3.0103;FS=21.404;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.12;ReadPosRankSum=2.054;SOR=2.941;set=HC	GT:AD:AF:DP	0/1:71,19:0.21:90
chr16	5037753	rs2972260	G	C	140.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.388;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.52;ReadPosRankSum=-0.619;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:30,10:0.25:40
chr16	5040971	rs2972263	T	C	554.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:45,30:0.40:75
chr16	5041778	rs2972265	T	C	5911.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr16	5046202	rs2908676	T	A	1366.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.963;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=8.044;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.20;ReadPosRankSum=-0.366;SOR=1.452;set=HC	GT:AD:AF:DP	0/1:84,38:0.31:122
chr16	5046208	rs2908675	C	A	1436.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.250;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=7.401;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.56;ReadPosRankSum=-1.336;SOR=1.378;set=HC	GT:AD:AF:DP	0/1:92,44:0.32:136
chr16	5046320	.	T	A	1390.77	.	AC=1;AF=0.500;AN=2;DP=244;set=Intersection	GT:AD:AF:DP	0/1:158,81:0.34:239
chr16	5046787	rs2270260	G	C	1354.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:22,58:0.72:80
chr16	5050554	rs2908674	C	G	429.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:44,22:0.33:66
chr16	5050897	rs2286966	G	C	1723.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:61,78:0.56:139
chr16	5053331	rs2972280	C	T	91.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:23,6:0.21:29
chr16	5055864	rs55930593	CA	C	1070.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.380;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=0.917;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=0.019;QD=7.65;ReadPosRankSum=-0.083;SOR=0.555;set=HC	GT:AD:AF:DP	0/1:36,104:0.74:140
chr16	5056122	rs2302555	C	T	1026.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:15,41:0.73:56
chr16	5061085	rs2908669	A	C	1675.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:35,71:0.67:106
chr16	5075542	rs887854	G	A	3814.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr16	5077395	rs71402581	TGGGAGGA	T	2575.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.526;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=7.248;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.01;ReadPosRankSum=-0.245;SOR=1.457;set=HC	GT:AD:AF:DP	0/1:38,65:0.63:103
chr16	5077452	rs12927924	G	A	456.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:37,21:0.36:58
chr16	5078215	rs8060705	G	C	5352.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.374;ClippingRankSum=0.000;DB;DP=253;ExcessHet=3.0103;FS=130.954;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.21;ReadPosRankSum=1.603;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:106,135:0.56:241
chr16	5078220	rs71390614	C	T	5385.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.690;ClippingRankSum=0.000;DB;DP=258;ExcessHet=3.0103;FS=135.048;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.89;ReadPosRankSum=1.542;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:106,140:0.57:246
chr16	5078841	rs1995278	T	C	7910.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr16	5078857	rs12929283	C	T	2210.77	.	AC=1;AF=0.500;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	0/1:234,119:0.34:353
chr16	5083209	rs35962888	G	A	323.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:13,14:0.52:27
chr16	5083483	rs2972272	T	C	4135.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr16	5094570	rs8055684	G	A	1881.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:47,86:0.65:133
chr16	5105365	rs741167	C	T	3765.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:85,163:0.66:248
chr16	5105440	rs741166	T	C	1879.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:29,69:0.70:98
chr16	5106184	rs741164	C	T	3875.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:81,180:0.69:261
chr16	5108808	rs17137557	G	A	472.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:5,18:0.78:23
chr16	5110271	rs2270834	C	T	5597.77	.	AC=1;AF=0.500;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	0/1:148,261:0.64:409
chr16	5122072	rs112683515	G	GGTCT	9005.73	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr16	5122191	rs34061670	C	CG	2787.73	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr16	5125365	rs4786590	C	T	6767.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr16	5125561	.	A	T	1272.77	.	AC=1;AF=0.500;AN=2;DP=170;set=Intersection	GT:AD:AF:DP	0/1:99,63:0.39:162
chr16	5127335	rs11076869	T	A	4972.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr16	5517175	rs34212245	T	TTC	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.709;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.36;ReadPosRankSum=0.970;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:70,17:0.20:87
chr16	5649140	rs71404537	T	TTAGGAAA	13344.73	.	AC=1;AF=0.500;AN=2;DB;DP=531;MQ=60.08;set=Intersection	GT:AD:AF:DP	0/1:176,332:0.65:508
chr16	5649187	rs17138179	A	G	4212.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:115,179:0.61:294
chr16	6533549	rs7187508	C	A	946.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.173;ClippingRankSum=0.000;DB;DP=198;ExcessHet=3.0103;FS=0.568;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.86;ReadPosRankSum=0.367;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:134,61:0.31:195
chr16	6704474	rs11640601	A	G	3953.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.191;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=1.530;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.36;ReadPosRankSum=-2.245;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:52,98:0.65:150
chr16	6704478	rs35760157	A	T	4118.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.345;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.07;ReadPosRankSum=-0.765;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:59,99:0.63:158
chr16	6704480	rs11645523	C	G	4118.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.386;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=2.231;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.11;ReadPosRankSum=-1.445;SOR=0.524;set=HC	GT:AD:AF:DP	0/1:59,105:0.64:164
chr16	6704555	rs12921150	CT	AA	11990.77	.	AC=1;AF=0.500;AN=2;DB;DP=440;JOINED;set=Intersection	GT:AD:AF:DP	0/1:142,296:0.68:438
chr16	6704749	rs2058527	T	G	3786.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:93,170:0.65:263
chr16	7102036	rs35212568	CT	C	10137.73	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr16	7645808	rs12935264	C	G	268.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.40;SOR=2.670;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr16	7657373	rs1507010	A	G	1278.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.922;ClippingRankSum=0.000;DB;DP=295;ExcessHet=3.0103;FS=1.565;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.36;ReadPosRankSum=-1.982;SOR=0.805;set=HC	GT:AD:AF:DP	0/1:211,82:0.28:293
chr16	7657432	rs4616299	A	G	3026.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:41,130:0.76:171
chr16	7703785	rs3217052	G	GCT	7043.74	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:20,231:0.92:251
chr16	7704032	rs2302216	T	C	2138.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.94;SOR=1.702;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr16	7715108	rs8064206	T	C	6801.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr16	7721778	rs2286541	C	A	794.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:18,31:0.63:49
chr16	7726691	rs2191134	A	G	616.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr16	7743418	rs60812796	C	CT	574.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.068;ClippingRankSum=0.000;DB;DP=231;ExcessHet=3.0103;FS=1.885;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.68;ReadPosRankSum=0.611;SOR=1.027;set=HC	GT:AD:AF:DP	0/1:96,60:0.38:156
chr16	7743481	.	GA	G	430.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.798;ClippingRankSum=0.000;DP=55;ExcessHet=3.0103;FS=5.194;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.51;ReadPosRankSum=-1.792;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:12,29:0.71:41
chr16	7758948	rs2270127	G	C	850.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:55,38:0.41:93
chr16	7759164	rs7196923	T	C	7386.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr16	7759206	rs62011897	G	T	2495.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:41,106:0.72:147
chr16	7760846	rs5815427	T	TA	218.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.310;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=2.831;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.94;ReadPosRankSum=-1.239;SOR=1.863;set=HC	GT:AD:AF:DP	0/1:6,16:0.73:22
chr16	8620096	rs9922116	T	C	394.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:51,20:0.28:71
chr16	8620126	rs34435406	T	A	350.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:26,15:0.37:41
chr16	8622164	.	T	TC	3046.73	.	AC=1;AF=0.500;AN=2;DP=200;set=Intersection	GT:AD:AF:DP	0/1:74,119:0.62:193
chr16	8728953	rs1731044	C	T	3713.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr16	8729124	rs2302607	G	A	4380.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:2,164:0.99:166
chr16	8729254	rs3108687	C	A	2623.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr16	8729275	rs1641040	T	C	2125.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr16	8729323	rs1731043	A	T	516.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr16	8732733	rs1362345	C	G	968.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr16	8732882	rs5815485	CA	C	5925.73	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr16	8733071	rs1641048	A	G	2482.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr16	8734802	.	G	GAT	361.74	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.239;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=63.75;MQRankSum=0.000;QD=30.14;ReadPosRankSum=0.329;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:2,10:0.83:12
chr16	8734803	.	G	A	401	.	AC=2;AF=1.00;AN=2;BRF=0.48;FR=1.0000;HP=2;HapScore=2;MGOF=112;MMLQ=26;MQ=63.9;NF=17;NR=2;PP=401;QD=22.9353269762;SC=GGATGGATGGGTGGGTGGATG;SbPval=0.71;Source=Platypus;TC=23;TCF=20;TCR=3;TR=19;WE=8734811;WS=8734793;set=Platypus	GT:AD:AF:DP	1/1:4,19:0.83:23
chr16	8734803	.	G	GGA	361.74	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.936;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=63.75;MQRankSum=0.000;QD=30.14;ReadPosRankSum=0.542;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:2,10:0.83:12
chr16	8734830	.	G	GCTGGCTGT	1522.73	.	AC=2;AF=1.00;AN=2;DP=41;set=Intersection	GT:AD:AF:DP	1/1:1,37:0.97:38
chr16	8735120	rs8062990	T	C	4070.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr16	8735200	rs8045911	G	A	4817.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr16	8735212	rs1629322	T	C	5204.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr16	8735245	rs1641055	C	T	7226.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr16	8735355	rs1641056	A	G	5319.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr16	8736028	rs1614616	T	C	10693.77	.	AC=2;AF=1.00;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	1/1:0,400:1.00:400
chr16	8736150	rs1615559	A	C	7228.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr16	8736246	rs1731007	G	A	13687.77	.	AC=2;AF=1.00;AN=2;DB;DP=506;set=Intersection	GT:AD:AF:DP	1/1:0,497:1.00:497
chr16	8736499	rs1618219	C	T	2705.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr16	8738350	rs11645418	C	T	5198.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr16	8738398	rs1641065	A	G	9188.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:3,331:0.99:334
chr16	8738427	rs1641066	T	C	11548.77	.	AC=2;AF=1.00;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	1/1:0,428:1.00:428
chr16	8738499	rs1731000	G	A	9484.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:0,352:1.00:352
chr16	8738579	rs1641067	A	G	4166.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr16	8738622	rs9933132	C	T	2318.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr16	8739954	rs1641070	G	A	1076.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr16	8740015	rs1730994	A	C	2906.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr16	8740418	rs1641072	T	C	9643.77	.	AC=2;AF=1.00;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	1/1:0,367:1.00:367
chr16	8740503	rs1730992	G	A	6199.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr16	8740653	rs1641073	C	T	2127.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr16	8829715	rs1640998	T	C	4506.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr16	8832485	.	G	GT	144.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.419;ClippingRankSum=0.000;DP=117;ExcessHet=3.0103;FS=2.682;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.86;ReadPosRankSum=0.979;SOR=0.304;set=HC	GT:AD:AF:DP	0/1:59,19:0.24:78
chr16	8839954	rs1731017	A	G	2046.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr16	8840025	rs2103340	C	T	840.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr16	8841794	rs753071	T	G	688.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr16	8841960	rs1641010	T	C	4751.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr16	8842128	rs1641011	T	A	874.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr16	8851767	rs12930438	C	T	6823.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr16	8858580	rs2302608	T	A	8173.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr16	8858700	rs148949594	G	GCA	2037.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.691;ClippingRankSum=0.000;DB;DP=539;ExcessHet=3.0103;FS=1.438;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=1.673;QD=5.04;ReadPosRankSum=1.297;SOR=0.595;set=HC	GT:AD:AF:DP	0/1:310,94:0.23:404
chr16	8862212	rs8049072	C	T	428.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr16	8862506	rs1273406	C	A	1048.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr16	8862592	rs1273407	T	C	5220.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr16	8868776	rs1641022	C	A	514.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:57,31:0.35:88
chr16	8890322	rs74689268	G	A	5668.77	.	AC=1;AF=0.500;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	0/1:100,245:0.71:345
chr16	8890574	rs11642272	G	A	362.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:36,19:0.35:55
chr16	8896094	rs2304469	G	A	6211.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr16	8904877	rs34742119	T	TATG	2429.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr16	8905054	rs11074924	T	C	4175.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr16	8907145	rs9924186	G	T	3281.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr16	8948974	rs6898	T	C	3487.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr16	8952113	rs62033507	C	A	1990.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr16	8952248	rs988065	A	G	8846.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:0,333:1.00:333
chr16	8953081	rs8097	C	G	2934.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.74;SOR=2.142;set=HC	GT:AD:AF:DP	1/1:0,114:1.00:114
chr16	8988386	rs28362503	CG	C	84.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.366;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.34;MQRankSum=0.489;QD=10.59;ReadPosRankSum=0.712;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:3,5:0.62:8
chr16	8988777	rs2304467	C	G	882.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:97,45:0.32:142
chr16	8989403	rs1677473	A	G	4753.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr16	8992342	rs2304465	G	A	9353.77	.	AC=1;AF=0.500;AN=2;DB;DP=611;set=Intersection	GT:AD:AF:DP	0/1:173,425:0.71:598
chr16	8992828	rs2289109	G	T	786.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:63,38:0.38:101
chr16	8992868	rs2437724	AC	CA	8418.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr16	8994563	rs2447919	C	T	1642.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:34,75:0.69:109
chr16	8995177	rs199579856	GAAA	G,GAA	912.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.589;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.24;MQRankSum=0.354;QD=27.66;ReadPosRankSum=-0.263;SOR=1.552;set=HC	GT:AD:AF:DP	1/2:1,23,9:0.70,0.27:33
chr16	8995927	rs2304466	G	A	798.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:79,43:0.35:122
chr16	8996377	rs2447918	C	T	493.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:12,23:0.66:35
chr16	8998571	rs2437727	G	C	503.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:17,26:0.60:43
chr16	9004564	rs2447916	C	A	15904.77	.	AC=2;AF=1.00;AN=2;DB;DP=589;set=Intersection	GT:AD:AF:DP	1/1:1,575:1.00:576
chr16	9010213	rs7195624	T	G	157.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:13,7:0.35:20
chr16	9010260	rs138207509	ATTTTCTGAATTAGGTC	A	1133.73	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:19,30:0.61:49
chr16	9010446	rs57510291	A	AC	4006.73	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr16	9010826	.	T	TA	122.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.295;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=3.442;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.09;ReadPosRankSum=1.596;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:16,14:0.47:30
chr16	9014350	rs1677470	T	C	4125.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr16	9014385	rs7189170	G	A	444.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:77,29:0.27:106
chr16	9014434	rs2447912	T	G	1129.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr16	9015252	rs30761	A	T	1859.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.63;SOR=1.569;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr16	9015252	.	ATTTCAT	TTTTCAC,TTTTCAT	470	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.32;FR=0.5000,0.5000;HP=3;HapScore=2;MGOF=0;MMLQ=28;MQ=60.0;NF=4,13;NR=14,34;PP=276,470;QD=18.3037708257;SC=CCCATTTATGATTTCATTGCT;SbPval=0.75;Source=Platypus;TC=47;TCF=13;TCR=34;TR=18,47;WE=9015266;WS=9015242;set=Platypus	GT:AF:DP	0/1:0.38:47
chr16	9015258	rs9940652	T	C	341.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.494;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=1.256;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.70;ReadPosRankSum=1.463;SOR=0.923;set=HC	GT:AD:AF:DP	0/1:34,17:0.33:51
chr16	9017061	rs139138924	T	TACAACGATGTGGGGGTTTGTAGTTGCATCATTTAA	5024.73	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr16	9030444	rs1382390	C	G	4216.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr16	9210373	rs8045589	A	T	1617.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr16	9862556	rs11866328	G	T	562.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:53,29:0.35:82
chr16	9916204	rs9806806	C	G	1100.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:174,65:0.27:239
chr16	9943666	rs2229193	C	T	1333.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.057;ClippingRankSum=0.000;DB;DP=346;ExcessHet=3.0103;FS=0.448;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.91;ReadPosRankSum=1.677;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:252,89:0.26:341
chr16	10524656	rs56252625	GGAC	G	6503.73	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:65,162:0.71:227
chr16	10532211	rs1532824	A	C	355.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:4,15:0.79:19
chr16	10566146	rs4453490	G	T	574.88	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:3,26:0.90:29
chr16	10567751	.	CT	C	68.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.554;ClippingRankSum=0.000;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=0.000;QD=1.37;ReadPosRankSum=-0.028;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:36,14:0.28:50
chr16	10574829	rs12596111	A	T	6175.77	.	AC=1;AF=0.500;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	0/1:118,275:0.70:393
chr16	10575824	rs1970817	C	A	4835.77	.	AC=1;AF=0.500;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	0/1:113,212:0.65:325
chr16	10625605	rs149380057	GATGAATGA	G	932.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.345;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=0.873;QD=22.21;ReadPosRankSum=0.227;SOR=0.789;set=HC	GT:AD:AF:DP	0/1:17,25:0.60:42
chr16	10625887	rs7195563	C	T	4243.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:116,188:0.62:304
chr16	10625997	rs7194566	G	A	3332.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:79,151:0.66:230
chr16	10626059	rs35914943	AG	A	2444.73	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:49,98:0.67:147
chr16	10627085	rs4780939	A	G	310.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:7,14:0.67:21
chr16	10641467	.	AC	A	725.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.077;ClippingRankSum=0.000;DP=112;ExcessHet=3.0103;FS=0.824;MLEAC=1;MLEAF=0.500;MQ=60.39;MQRankSum=3.116;QD=6.78;ReadPosRankSum=-1.668;SOR=0.566;set=HC	GT:AD:AF:DP	0/1:75,32:0.30:107
chr16	10783088	.	TA	T	353.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.405;ClippingRankSum=0.000;DP=283;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.36;ReadPosRankSum=0.520;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:192,69:0.26:261
chr16	10840847	rs4780323	C	G	1569.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:20,60:0.75:80
chr16	10855521	rs36097495	CT	C	1082.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.154;ClippingRankSum=0.000;DB;DP=220;ExcessHet=3.0103;FS=4.886;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.836;QD=5.33;ReadPosRankSum=0.540;SOR=0.401;set=HC	GT:AD:AF:DP	0/1:104,99:0.49:203
chr16	10989374	rs11074937	C	T	7046.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr16	10992715	rs6498121	T	G	2140.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:26,89:0.77:115
chr16	10995850	rs6498124	G	T	2272.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr16	10995933	rs8046121	A	G	6399.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr16	10996332	rs6498125	C	G	508.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr16	11001680	rs34685848	G	T	2353.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:170,122:0.42:292
chr16	11001743	rs2229320	G	A	3116.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:107,136:0.56:243
chr16	11002133	rs4781018	C	G	2446.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr16	11002904	rs2228238	G	A	8973.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:1,329:1.00:330
chr16	11002927	rs7197779	A	G	11598.77	.	AC=2;AF=1.00;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	1/1:0,447:1.00:447
chr16	11004150	rs4781019	C	T	869.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:101,46:0.31:147
chr16	11009533	rs184744868	C	T	5037.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:70,223:0.76:293
chr16	11010150	rs6498130	G	T	379.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:50,22:0.31:72
chr16	11015906	rs6498134	A	G	3929.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr16	11017058	rs4781024	G	A	6918.77	.	AC=1;AF=0.500;AN=2;DB;DP=490;set=Intersection	GT:AD:AF:DP	0/1:159,319:0.67:478
chr16	11038824	rs3743976	C	T	89.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:12,5:0.29:17
chr16	11062936	rs17229044	C	T	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.385;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.98;ReadPosRankSum=0.728;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:7,3:0.30:10
chr16	11063214	.	CT	C	380.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.111;ClippingRankSum=0.000;DP=136;ExcessHet=3.0103;FS=1.055;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.122;QD=3.89;ReadPosRankSum=-0.678;SOR=0.488;set=HC	GT:AD:AF:DP	0/1:53,45:0.46:98
chr16	11064865	rs35498388	AT	A	278.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.343;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=1.253;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=1.067;QD=4.50;ReadPosRankSum=-0.523;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:32,30:0.48:62
chr16	11114006	rs2286975	G	A	953.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:113,54:0.32:167
chr16	11136048	rs2302557	C	G	790.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:104,47:0.31:151
chr16	11137740	rs35371708	GA	G	415.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.590;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=4.919;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=1.989;QD=4.29;ReadPosRankSum=1.006;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:57,40:0.41:97
chr16	11154770	rs2286973	G	A	1290.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:140,73:0.34:213
chr16	11214668	rs3217121	AAC	A	398.73	.	AC=1;AF=0.500;AN=2;DB;DP=51;MQ=60.21;set=Intersection	GT:AD:AF:DP	0/1:15,20:0.57:35
chr16	11250413	rs7189563	C	A	896.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:67,44:0.40:111
chr16	11349403	rs27829	A	C	2244.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr16	11349940	.	C	T	294.77	.	AC=1;AF=0.500;AN=2;DP=33;set=Intersection	GT:AD:AF:DP	0/1:16,16:0.50:32
chr16	11350059	rs27831	T	C	1159.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.77;SOR=0.929;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr16	11361895	rs8043625	C	G	667.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:35,34:0.49:69
chr16	11362640	rs56069754	G	A	1524.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:29,67:0.70:96
chr16	11362729	rs11640138	G	A	4127.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:79,182:0.70:261
chr16	11367143	rs438289	G	A	5714.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr16	11367154	rs429744	C	T	996.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:117,52:0.31:169
chr16	11367477	rs2301127	G	A	708.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:11,27:0.71:38
chr16	11369855	rs2070923	G	T	1002.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.605;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=9.404;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.54;ReadPosRankSum=0.160;SOR=0.246;set=HC	GT:AD:AF:DP	0/1:80,53:0.40:133
chr16	11374866	rs737008	G	T	2758.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:53,114:0.68:167
chr16	11439303	rs12149160	G	T	101.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:3,5:0.62:8
chr16	11439496	rs11545336	G	A	267.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:14,14:0.50:28
chr16	11439639	rs918737	T	C	1737.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr16	11439679	rs918738	C	G	480.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:24,24:0.50:48
chr16	11439733	rs918739	G	T	1042.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr16	11444403	rs2032929	T	C	1197.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr16	11444425	rs28627609	C	T	465.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.168;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=1.283;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=-1.184;QD=12.26;ReadPosRankSum=1.435;SOR=0.454;set=HC	GT:AD:AF:DP	0/1:15,23:0.61:38
chr16	11444430	rs2032930	T	G	1665.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.23;QD=35.44;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr16	11444454	rs57767216	GA	G	937.73	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:10,59:0.86:69
chr16	11444469	rs2032931	C	T	3384.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr16	11444572	rs7204628	A	C	1642.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:38,79:0.68:117
chr16	11444726	rs6498185	C	T	258.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:8,11:0.58:19
chr16	11537347	.	A	AAGAGAGAG	4546.73	.	AC=2;AF=1.00;AN=2;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.23;QD=82.67;SOR=1.739;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr16	11537471	rs12925081	C	T	1800.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:179,98:0.35:277
chr16	11540596	rs4359463	A	C	974.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:185,61:0.25:246
chr16	11540712	rs4500747	T	C	3895.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr16	11540760	rs4502229	C	T	1080.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:39,50:0.56:89
chr16	11541685	rs4296278	A	G	3389.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr16	11541896	rs4238608	G	A	7542.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr16	11542894	rs4467099	C	T	10465.77	.	AC=2;AF=1.00;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	1/1:0,394:1.00:394
chr16	11544673	rs12932948	G	A	688.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.039;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=4.272;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.30;ReadPosRankSum=1.065;SOR=0.408;set=HC	GT:AD:AF:DP	0/1:116,44:0.28:160
chr16	11544741	rs6498192	G	A	2614.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr16	11544824	rs6498194	G	A	478.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr16	11550619	rs72777209	G	A	1972.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr16	11553883	rs35839588	C	G	8608.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr16	11554301	rs72777212	C	G	13224.77	.	AC=2;AF=1.00;AN=2;DB;DP=504;set=Intersection	GT:AD:AF:DP	1/1:0,495:1.00:495
chr16	11554737	rs8046254	C	T	1060.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr16	11555016	rs6498202	C	G	6645.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr16	11555861	rs4781101	G	C	3733.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr16	11556121	rs4254342	A	G	2649.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:2,101:0.98:103
chr16	11645776	rs35493477	CT	C	436.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.785;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.899;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.75;ReadPosRankSum=0.848;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:40,36:0.47:76
chr16	11647492	rs4280262	T	C	6102.77	.	AC=1;AF=0.500;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	0/1:108,265:0.71:373
chr16	11647532	rs9282774	C	T	1270.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:236,82:0.26:318
chr16	11650325	rs3743582	G	A	3067.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:70,126:0.64:196
chr16	11690308	rs113749419	A	AGAGGAGGAG	1222.73	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:13,32:0.71:45
chr16	11769948	rs1050068	C	T	1125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.120;ClippingRankSum=0.000;DB;DP=296;ExcessHet=3.0103;FS=1.013;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.87;ReadPosRankSum=2.877;SOR=0.796;set=HC	GT:AD:AF:DP	0/1:212,79:0.27:291
chr16	11769963	rs1050069	C	T	1370.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:202,88:0.30:290
chr16	11773662	rs3190321	C	G	913.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:94,50:0.35:144
chr16	11773743	rs7188511	G	T	120.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:31,9:0.23:40
chr16	11797365	rs147693005	TACAC	T,TACACAC	1153.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.19;QD=30.36;SOR=1.751;set=HC	GT:AD:AF:DP	1/2:0,26,12:0.68,0.32:38
chr16	11824056	rs11639945	T	G	67.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.346;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=1.544;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.41;ReadPosRankSum=-1.957;SOR=1.124;set=HC	GT:AD:AF:DP	0/1:40,8:0.17:48
chr16	11828018	rs4780398	A	G	1556.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr16	11836398	rs3743587	C	G	952.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:26,46:0.64:72
chr16	11836508	rs3743588	G	A	2709.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.926;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=0.624;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.638;QD=15.85;ReadPosRankSum=1.579;SOR=0.759;set=HC	GT:AD:AF:DP	0/1:48,123:0.72:171
chr16	11870560	rs35675698	T	C	1866.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:44,84:0.66:128
chr16	11940390	rs8052900	T	C	2762.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr16	11940764	rs1019814	T	C	934.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr16	11940829	rs1019813	C	T	302.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr16	11945231	rs2075158	T	C	15275.77	.	AC=2;AF=1.00;AN=2;DB;DP=595;set=Intersection	GT:AD:AF:DP	1/1:0,593:1.00:593
chr16	11980878	rs34304551	G	GT	162.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.773;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.85;ReadPosRankSum=1.415;SOR=0.509;set=HC	GT:AD:AF:DP	0/1:37,20:0.35:57
chr16	12009150	rs28653099	C	A	939.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr16	12009279	rs424518	A	G	8174.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chr16	12009304	rs11544193	C	A	9394.77	.	AC=2;AF=1.00;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	1/1:1,368:1.00:369
chr16	12009530	.	CCCGCCGCCG	C,CCCGCCGCCGCCG	4396.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=179;set=Intersection	GT:AF:DP	1/2:0.65,0.30:125
chr16	12009614	rs435108	G	A	4668.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr16	12009781	rs434762	G	A	21361.77	.	AC=2;AF=1.00;AN=2;DB;DP=794;set=Intersection	GT:AD:AF:DP	1/1:0,793:1.00:793
chr16	12021332	rs256390	G	A	6802.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr16	12031390	rs677507	C	T	7739.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr16	12031448	rs636664	T	C	8480.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chr16	12059038	rs11570139	C	T	584.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:32,23:0.42:55
chr16	12060163	rs373496	A	G	4937.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr16	12070486	rs446289	T	G	192.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr16	12136954	rs1703492	A	C	3268.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:2,122:0.98:124
chr16	12142130	rs56363861	C	T	1767.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:36,68:0.65:104
chr16	12142172	rs3826097	T	G	5789.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.642;ClippingRankSum=0.000;DB;DP=221;ExcessHet=3.0103;FS=1.970;MLEAC=1;MLEAF=0.500;MQ=59.60;MQRankSum=-1.238;QD=26.80;ReadPosRankSum=1.122;SOR=0.556;set=HC	GT:AD:AF:DP	0/1:73,143:0.66:216
chr16	12142175	rs3826098	C	G	5873.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.334;ClippingRankSum=0.000;DB;DP=237;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.55;MQRankSum=-1.475;QD=25.43;ReadPosRankSum=1.648;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:81,150:0.65:231
chr16	12145683	rs373216147	CT	C	234.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.246;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=1.618;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.757;QD=1.45;ReadPosRankSum=-0.040;SOR=0.872;set=HC	GT:AD:AF:DP	0/1:118,44:0.27:162
chr16	12154875	rs3894905	G	A	444.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:15,18:0.55:33
chr16	12162939	rs373111227	C	T	2030.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:195,112:0.36:307
chr16	12162969	rs1641843	A	G	3362.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:103,160:0.61:263
chr16	12181510	rs11648468	C	T	1138.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:22,46:0.68:68
chr16	12181702	rs11648228	G	T	5261.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:123,235:0.66:358
chr16	12183500	rs12596549	C	A	571.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:19,24:0.56:43
chr16	12223637	rs62038898	A	G	833.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:10,35:0.78:45
chr16	12296803	rs1701115	G	T	11085.77	.	AC=2;AF=1.00;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	1/1:0,400:1.00:400
chr16	12297234	.	A	G	2962	.	AC=1;AF=0.500;AN=2;BRF=0.58;FR=0.5000;HP=1;HapScore=1;MGOF=31;MMLQ=21;MQ=57.15;NF=219;NR=134;PP=2962;QD=20;SC=GGAGGTGACAACTCTGAAGTT;SbPval=0.89;Source=Platypus;TC=955;TCF=503;TCR=452;TR=353;WE=12297255;WS=12297224;set=Platypus	GT:AD:AF:DP	0/1:602,353:0.37:955
chr16	12297247	.	A	G	2962	.	AC=1;AF=0.500;AN=2;BRF=0.58;FR=0.5000;HP=2;HapScore=1;MGOF=31;MMLQ=17;MQ=57.32;NF=252;NR=164;PP=2962;QD=20;SC=CTGAAGTTGTATAGTGTGGCC;SbPval=0.88;Source=Platypus;TC=985;TCF=505;TCR=480;TR=416;WE=12297255;WS=12297224;set=Platypus	GT:AD:AF:DP	0/1:569,416:0.42:985
chr16	12297247	.	A	ATAGTGTGGCCCTGATGTCAGATGGACTGGTGGCATTGGAGGTGACGTCTCTGAAGTTGTGTAGTGAGGCCTTGCTGTCAGGTGGACTGGTGGCATTGGAGGTGACAGCTCTGAAGTTGTGTAGTGTGACCCTGGTGTCAGGTGGACTGGTGGCATTGGAGGTGACAGCTCTGAAGTTGTG	12553.73	.	AC=2;AF=1.00;AN=2;DP=894;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.66;QD=14.35;SOR=0.633;set=HC	GT:AD:AF:DP	1/1:875,0:0:875
chr16	12297313	.	T	A	2962	.	AC=1;AF=0.500;AN=2;BRF=0.57;FR=0.5000;HP=3;HapScore=1;MGOF=53;MMLQ=22;MQ=56.84;NF=124;NR=256;PP=2962;QD=20;SC=TTGTGTAGTGTGGCCTTGCTG;SbPval=0.93;Source=Platypus;TC=930;TCF=402;TCR=528;TR=380;WE=12297321;WS=12297303;set=Platypus	GT:AD:AF:DP	1/0:550,380:0.41:930
chr16	12297353	.	GT	AG	2944	.	AC=1;AF=0.500;AN=2;FR=0.5000;HP=1;HapScore=1;MMLQ=28;NF=63;NR=180;PP=2944;QD=20;SC=TGGAGGTGACGTCTCTGAAGT;SbPval=0.98;Source=Platypus;TC=747;TCF=302;TCR=445;TR=243;WE=12297362;WS=12297343;set=Platypus	GT:AD:AF:DP	1/0:504,243:0.33:747
chr16	12297562	rs1701113	G	A	4953.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr16	12371915	rs12448443	T	C	1103.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.223;ClippingRankSum=0.000;DB;DP=230;ExcessHet=3.0103;FS=1.756;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.86;ReadPosRankSum=-0.927;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:157,70:0.31:227
chr16	12449855	rs7190509	T	C	581.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:53,29:0.35:82
chr16	12449925	rs11075062	C	G	1626.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:142,85:0.37:227
chr16	12450163	rs4781211	C	G	491.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:40,24:0.38:64
chr16	12492133	rs8055030	C	T	1427.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:101,41:0.29:142
chr16	12492153	rs8055044	C	G	1836.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:133,63:0.32:196
chr16	12497509	rs76112262	C	T	601.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:12,27:0.69:39
chr16	12536703	rs11075077	A	G	562.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr16	12536958	rs34889591	G	A	214.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:30,13:0.30:43
chr16	12536988	rs11646776	A	T	376.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:8,17:0.68:25
chr16	12758966	rs1713480	T	C	8538.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr16	12759027	rs1713479	A	G	4386.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr16	12897522	rs3748977	G	A	760.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.137;ClippingRankSum=0.000;DB;DP=208;ExcessHet=3.0103;FS=4.219;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.66;ReadPosRankSum=0.809;SOR=1.043;set=HC	GT:AD:AF:DP	0/1:159,49:0.24:208
chr16	12897578	rs3748976	G	T	1719.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.468;ClippingRankSum=0.000;DB;DP=455;ExcessHet=3.0103;FS=2.032;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.85;ReadPosRankSum=-2.046;SOR=0.898;set=HC	GT:AD:AF:DP	0/1:330,117:0.26:447
chr16	12897744	rs3833561	C	CGGGGCGGGACT	522.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.426;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=0.893;MLEAC=1;MLEAF=0.500;MQ=60.55;MQRankSum=6.671;QD=5.12;ReadPosRankSum=-2.162;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:80,22:0.22:102
chr16	13002359	rs9938751	T	C	10256.77	.	AC=2;AF=1.00;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	1/1:0,389:1.00:389
chr16	13297242	rs13331224	C	T	5135.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr16	14013993	rs1799797	T	A	524.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:49,28:0.36:77
chr16	14014240	rs762521	G	A	409.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:59,26:0.31:85
chr16	14026007	rs254942	G	A	2960.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.97;SOR=0.841;set=HC	GT:AD:AF:DP	1/1:0,114:1.00:114
chr16	14026951	rs3136130	G	T	272.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.105;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.17;ReadPosRankSum=-0.664;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:64,22:0.26:86
chr16	14031520	rs31869	G	A	259.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr16	14038545	rs1799799	T	C	1753.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.274;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.81;ReadPosRankSum=-0.027;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:80,47:0.37:127
chr16	14038552	rs1799800	G	A	1808.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.197;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=0.659;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.83;ReadPosRankSum=0.222;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:89,52:0.37:141
chr16	14041958	rs1799801	T	C	2642.77	.	AC=1;AF=0.500;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	0/1:304,152:0.33:456
chr16	14042077	rs1800124	A	G	2205.77	.	AC=1;AF=0.500;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	0/1:224,116:0.34:340
chr16	14334526	rs45520934	C	T	2300.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:173,114:0.40:287
chr16	14646096	rs78379650	C	A	260.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:40,17:0.30:57
chr16	14649626	rs16963773	C	T	675.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:56,35:0.38:91
chr16	14674918	rs116955432	T	C	134.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.375;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=1.345;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.54;ReadPosRankSum=1.511;SOR=0.373;set=HC	GT:AD:AF:DP	0/1:40,13:0.25:53
chr16	14675943	rs72787692	C	G	793.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:86,42:0.33:128
chr16	14678788	rs147374162	TA	T	35.73	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:7,3:0.30:10
chr16	14687144	rs75783314	A	G	1450.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:166,85:0.34:251
chr16	14687349	.	T	A	84.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.177;ClippingRankSum=-0.000;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.12;MQRankSum=2.109;QD=6.52;ReadPosRankSum=1.374;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:8,5:0.38:13
chr16	14700254	rs4782156	G	A	2206.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.401;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.52;ReadPosRankSum=0.993;SOR=0.600;set=HC	GT:AD:AF:DP	1/1:5,93:0.95:98
chr16	14702275	.	T	C	394.77	.	AC=1;AF=0.500;AN=2;DP=25;set=Intersection	GT:AD:AF:DP	0/1:8,15:0.65:23
chr16	14738525	rs376559546	CT	C	150.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.604;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=2.623;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-0.977;QD=2.64;ReadPosRankSum=0.413;SOR=0.531;set=HC	GT:AD:AF:DP	0/1:36,21:0.37:57
chr16	14742400	rs11546303	T	G	1366.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.223;ClippingRankSum=0.000;DB;DP=265;ExcessHet=3.0103;FS=2.964;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.24;ReadPosRankSum=0.809;SOR=0.513;set=HC	GT:AD:AF:DP	0/1:178,83:0.32:261
chr16	14763076	rs114300158	C	T	205.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.531;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=1.332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.74;ReadPosRankSum=-2.061;SOR=0.452;set=HC	GT:AD:AF:DP	0/1:41,14:0.25:55
chr16	14772551	rs117954937	C	T	648.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:41,28:0.41:69
chr16	14951573	.	G	A	1802.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.741;ClippingRankSum=0.000;DP=423;ExcessHet=3.0103;FS=2.063;MLEAC=1;MLEAF=0.500;MQ=55.78;MQRankSum=-17.211;QD=4.33;ReadPosRankSum=-1.078;SOR=0.901;set=HC	GT:AD:AF:DP	0/1:305,111:0.27:416
chr16	14951630	rs199610264	CT	C	512.84	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.094;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=2.489;MLEAC=1;MLEAF=0.500;MQ=54.06;MQRankSum=0.597;QD=7.65;ReadPosRankSum=-1.674;SOR=0.361;set=HC	GT:AD:AF:DP	0/1:17,50:0.75:67
chr16	14958514	rs117835774	A	G	937.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.126;ClippingRankSum=0.000;DB;DP=530;ExcessHet=3.0103;FS=3.418;MLEAC=1;MLEAF=0.500;MQ=57.48;MQRankSum=-21.721;QD=1.79;ReadPosRankSum=-2.218;SOR=0.962;set=HC	GT:AD:AF:DP	0/1:433,92:0.18:525
chr16	14968859	rs77578560	C	T	5256.77	.	AC=1;AF=0.500;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	0/1:111,239:0.68:350
chr16	14969016	rs79100490	T	A	133.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.819;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=17.203;MLEAC=1;MLEAF=0.500;MQ=47.60;MQRankSum=-4.136;QD=0.70;ReadPosRankSum=2.145;SOR=0.383;set=HC	GT:AD:AF:DP	0/1:162,30:0.16:192
chr16	15068908	rs28418438	C	G	1095.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;MQ=59.98;set=Intersection	GT:AD:AF:DP	0/1:100,50:0.33:150
chr16	15083131	rs4985166	A	T	1610.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:99,74:0.43:173
chr16	15083383	rs139221308	G	A	1041.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:30,50:0.62:80
chr16	15083561	rs145963881	G	A	858.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:12,37:0.76:49
chr16	15083569	.	C	CGCA	189.73	.	AC=1;AF=0.500;AN=2;DP=44;set=Intersection	GT:AD:AF:DP	0/1:33,8:0.20:41
chr16	15083868	rs9928601	A	C	1001.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:19,48:0.72:67
chr16	15091589	rs11421981	C	CT	2087.73	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:93,132:0.59:225
chr16	15092116	rs6498535	C	T	825.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.748;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=11.242;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=0.101;QD=16.19;ReadPosRankSum=-1.356;SOR=2.589;set=HC	GT:AD:AF:DP	0/1:25,26:0.51:51
chr16	15092122	rs139576977	C	T	371.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.085;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=1.224;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=0.331;QD=6.20;ReadPosRankSum=-1.050;SOR=1.073;set=HC	GT:AD:AF:DP	0/1:41,19:0.32:60
chr16	15100202	rs71271216	A	G	2102.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:98,87:0.47:185
chr16	15103768	.	G	A	111.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.278;ClippingRankSum=0.000;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.45;MQRankSum=-0.391;QD=1.55;ReadPosRankSum=1.657;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:61,11:0.15:72
chr16	15110077	rs4262938	C	T	5594.77	.	AC=1;AF=0.500;AN=2;DB;DP=500;set=Intersection	GT:AD:AF:DP	0/1:235,260:0.53:495
chr16	15116400	rs4985161	T	A	1670.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:101,76:0.43:177
chr16	15116521	rs4985160	C	T	5012.77	.	AC=1;AF=0.500;AN=2;DB;DP=631;set=Intersection	GT:AD:AF:DP	0/1:357,268:0.43:625
chr16	15116625	rs1058637	G	T	1973.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:153,97:0.39:250
chr16	15120411	rs62039476	T	C	946.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:75,38:0.34:113
chr16	15122812	rs112323280	C	G	1568.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:179,91:0.34:270
chr16	15129940	rs3198697	C	T	1086.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:132,61:0.32:193
chr16	15135071	rs7498279	G	A	1091.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr16	15135269	rs9926473	T	G	484.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr16	15149874	rs139773894	C	A	286.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:7,13:0.65:20
chr16	15155898	rs2966157	T	C	1290.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr16	15157273	.	A	T	929.77	.	AC=1;AF=0.500;AN=2;DP=91;set=Intersection	GT:AD:AF:DP	0/1:32,53:0.62:85
chr16	15159001	rs148347276	C	T	3544.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:54,152:0.74:206
chr16	15159022	.	CA	C	346.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.336;ClippingRankSum=0.000;DP=353;ExcessHet=3.0103;FS=0.566;MLEAC=1;MLEAF=0.500;MQ=59.28;MQRankSum=-4.551;QD=1.05;ReadPosRankSum=1.259;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:251,78:0.24:329
chr16	15162143	.	T	TA	796.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.926;ClippingRankSum=0.000;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.17;MQRankSum=-1.788;QD=9.48;ReadPosRankSum=-1.935;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:35,49:0.58:84
chr16	15166891	rs2941256	T	C	1465.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:163,83:0.34:246
chr16	15170452	rs2966183	C	A	1686.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:169,90:0.35:259
chr16	15173746	rs2941253	G	A	353.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:26,17:0.40:43
chr16	15178499	rs76732059	G	A	1141.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.439;ClippingRankSum=0.000;DB;DP=465;ExcessHet=3.0103;FS=2.160;MLEAC=1;MLEAF=0.500;MQ=56.54;MQRankSum=-17.362;QD=2.51;ReadPosRankSum=3.961;SOR=0.516;set=HC	GT:AD:AF:DP	0/1:352,103:0.23:455
chr16	15178688	rs8061051	C	A	813.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:62,37:0.37:99
chr16	15179855	rs146007965	T	C	1227.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:23,46:0.67:69
chr16	15493046	rs153001	G	A	151.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:4,7:0.64:11
chr16	15494721	rs62039092	T	C	242.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:21,15:0.42:36
chr16	15494794	rs144631444	G	T	164.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:9,9:0.50:18
chr16	15501658	rs200953251	C	CT	2541.73	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:120,157:0.57:277
chr16	15596142	rs12448500	G	C	2447.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr16	15626831	rs12918517	C	T	415.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:36,20:0.36:56
chr16	15626960	rs12919246	A	G	494.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:55,28:0.34:83
chr16	15680642	rs2071332	C	T	3149.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;MQ=60.04;set=Intersection	GT:AD:AF:DP	0/1:98,150:0.60:248
chr16	15694484	rs79236569	G	A	5933.77	.	AC=1;AF=0.500;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	0/1:102,262:0.72:364
chr16	15695059	rs2071331	A	G	2918.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr16	15696480	rs71293163	A	AAGGAAAGAAGGAGGGAGGCAGAG	550.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.775;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.03;ReadPosRankSum=-0.050;SOR=1.426;set=HC	GT:AD:AF:DP	1/1:2,23:0.92:25
chr16	15705605	rs7185421	A	G	2476.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr16	15718591	rs2071333	G	A	2366.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr16	15724113	rs3752422	C	T	3606.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr16	15727459	rs5815838	AT	A	1401.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.613;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.32;MQRankSum=0.593;QD=15.07;ReadPosRankSum=0.419;SOR=0.527;set=HC	GT:AD:AF:DP	1/1:8,85:0.91:93
chr16	15730245	rs4781677	G	A	304.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:38,16:0.30:54
chr16	15758514	.	G	GT	55.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.334;ClippingRankSum=0.000;DP=61;ExcessHet=3.0103;FS=1.312;MLEAC=1;MLEAF=0.500;MQ=59.83;MQRankSum=0.000;QD=1.00;ReadPosRankSum=-0.655;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:43,13:0.23:56
chr16	15758744	.	C	CT	165.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.742;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.74;ReadPosRankSum=-0.763;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:18,17:0.49:35
chr16	15771601	rs6498567	T	C	2205.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr16	15781054	rs8044738	A	G	5208.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr16	15781092	rs55734390	G	T	972.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:133,57:0.30:190
chr16	15811023	rs1050163	C	T	17925.77	.	AC=2;AF=1.00;AN=2;DB;DP=683;set=Intersection	GT:AD:AF:DP	1/1:3,675:1.00:678
chr16	15811062	rs1050162	C	T	19000.77	.	AC=2;AF=1.00;AN=2;DB;DP=737;set=Intersection	GT:AD:AF:DP	1/1:4,729:0.99:733
chr16	15813211	rs11646134	G	T	4235.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr16	15813633	rs17284411	G	A	948.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:27,44:0.62:71
chr16	15813945	rs2075512	C	T	2693.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:54,113:0.68:167
chr16	15818141	rs2075511	A	C	2558.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:73,121:0.62:194
chr16	15818310	rs11130	G	A	1262.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:26,54:0.68:80
chr16	15838940	rs2384934	G	C	7543.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr16	15843899	rs6498570	G	A	6222.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr16	15850204	rs2272554	A	G	1394.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:106,76:0.42:182
chr16	15869801	rs2072619	T	C	3017.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:1,103:0.99:104
chr16	15876471	rs2075513	T	C	1040.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:153,66:0.30:219
chr16	15892465	.	TA	T	107.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.027;ClippingRankSum=0.000;DP=99;ExcessHet=3.0103;FS=6.085;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.20;ReadPosRankSum=-0.660;SOR=0.213;set=HC	GT:AD:AF:DP	0/1:66,24:0.27:90
chr16	15967236	rs8056910	T	C	609.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:47,29:0.38:76
chr16	15973654	rs8045082	G	T	444.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:47,25:0.35:72
chr16	16108282	rs4148337	T	C	245.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:34,15:0.31:49
chr16	16110244	rs185005	C	G	1017.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.393;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=2.245;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.12;ReadPosRankSum=0.065;SOR=0.420;set=HC	GT:AD:AF:DP	0/1:55,29:0.35:84
chr16	16110253	rs246215	T	C	1103.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.812;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.13;ReadPosRankSum=-1.272;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:59,32:0.35:91
chr16	16126758	rs924137	C	T	471.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.179;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=2.745;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.75;ReadPosRankSum=1.485;SOR=1.467;set=HC	GT:AD:AF:DP	0/1:24,13:0.35:37
chr16	16126764	rs924138	T	C	468.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.752;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.72;ReadPosRankSum=1.312;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:26,14:0.35:40
chr16	16161976	rs35604	G	A	1753.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.688;ClippingRankSum=0.000;DB;DP=408;ExcessHet=3.0103;FS=2.008;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.31;ReadPosRankSum=0.026;SOR=0.888;set=HC	GT:AD:AF:DP	0/1:298,109:0.27:407
chr16	16162019	rs35605	T	C	2616.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.833;ClippingRankSum=0.000;DB;DP=533;ExcessHet=3.0103;FS=1.939;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.01;ReadPosRankSum=-0.223;SOR=0.894;set=HC	GT:AD:AF:DP	0/1:368,154:0.30:522
chr16	16184232	rs2074087	C	G	3578.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr16	16200756	rs11075296	C	T	4230.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr16	16205141	rs4780592	A	G	5488.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.891;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=10.925;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=0.780;QD=36.59;ReadPosRankSum=0.625;SOR=0.151;set=HC	GT:AD:AF:DP	0/1:19,131:0.87:150
chr16	16205141	.	ACA	GCG	2944	.	AC=1;AF=0.500;AN=2;BRF=0.45;FR=0.5000;HP=2;HapScore=1;MGOF=49;MMLQ=24;MQ=60.39;NF=55;NR=36;PP=2944;QD=20;SC=GCTGGGTGGCACAGTGCTGGT;SbPval=0.4;Source=Platypus;TC=108;TCF=68;TCR=40;TR=91;WE=16205151;WS=16205131;set=Platypus	GT:AD:AF:DP	0/1:17,91:0.84:108
chr16	16205143	rs4780593	A	G	5678.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.937;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=10.984;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=0.774;QD=37.36;ReadPosRankSum=0.588;SOR=0.142;set=HC	GT:AD:AF:DP	0/1:19,133:0.88:152
chr16	16205161	rs4238623	G	A	6118.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:30,161:0.84:191
chr16	16205167	rs111263400	G	GTGGGGC	6161.73	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:34,151:0.82:185
chr16	16205449	rs3851716	G	A	1289.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr16	16219596	rs113369901	G	GAA,GAAAAAAAA	4665.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=153;set=Intersection	GT:AF:DP	1/2:0.73,0.27:147
chr16	16232201	rs45587033	GT	G	3355.73	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:93,179:0.66:272
chr16	16244129	rs212097	T	C	1007.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:109,58:0.35:167
chr16	16251435	rs3896244	G	A	2079.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr16	16253283	rs56822940	GC	G	6111.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.713;ClippingRankSum=0.000;DB;DP=232;ExcessHet=3.0103;FS=2.633;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=28.04;ReadPosRankSum=-1.949;SOR=0.323;set=HC	GT:AD:AF:DP	1/1:2,216:0.99:218
chr16	16253570	rs2238470	C	T	1058.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:29,42:0.59:71
chr16	16255195	rs3851721	T	G	1449.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.27;SOR=4.294;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr16	16255195	.	TTGGTTTGGAC	GTGGTTTGGAC,GTGGTTTGGAT	448	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.29;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=13;MMLQ=28;MQ=60.0;NF=30,17;NR=2,1;PP=224,448;QD=8.0866003921;SC=ACACACCATGTTGGTTTGGAC;SbPval=0.59;Source=Platypus;TC=32;TCF=30;TCR=2;TR=32,18;WE=16255213;WS=16255189;set=Platypus	GT:AF:DP	0/1:1.00:32
chr16	16255205	rs2376957	C	T	667.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.137;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.29;ReadPosRankSum=-1.738;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:15,26:0.63:41
chr16	16255240	rs3213470	G	A	1137.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:32,47:0.59:79
chr16	16263837	rs7201980	T	C	357.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr16	16267079	rs11866320	A	G	1822.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr16	16271357	rs6416668	T	C	14287.77	.	AC=2;AF=1.00;AN=2;DB;DP=554;set=Intersection	GT:AD:AF:DP	1/1:1,551:1.00:552
chr16	16272670	rs7500834	T	C	7069.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr16	16278036	rs190354733	A	T	902.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:79,43:0.35:122
chr16	16278948	rs41278182	C	T	1672.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr16	16280921	rs8056103	T	C	2516.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr16	16283973	rs55707615	G	A	373.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:13,17:0.57:30
chr16	16284265	rs2239322	T	C	1108.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.510;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.86;ReadPosRankSum=1.228;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:33,47:0.59:80
chr16	16284272	rs7193932	C	T	2598.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.66;SOR=1.897;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr16	16286614	rs6498618	G	C	3935.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr16	16291816	rs58394656	G	C	4203.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.102;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=28.40;ReadPosRankSum=1.593;SOR=5.339;set=HC	GT:AD:AF:DP	1/1:1,147:0.99:148
chr16	16291858	rs12929920	G	C	4720.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:105,203:0.66:308
chr16	16291871	rs9940089	G	C	5369.77	.	AC=1;AF=0.500;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	0/1:128,234:0.65:362
chr16	16297168	.	C	T	175	.	AC=1;AF=0.500;AN=2;BRF=0.15;FR=0.5000;HP=1;HapScore=2;MGOF=1;MMLQ=26;MQ=49.74;NF=12;NR=0;PP=175;QD=17.4809343789;SC=GAGCACCAGACGTATAGGCAG;SbPval=1.0;Source=Platypus;TC=46;TCF=38;TCR=8;TR=12;WE=16297176;WS=16297159;set=Platypus	GT:AD:AF:DP	0/1:34,12:0.26:46
chr16	16306169	.	AT	A	65.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.724;ClippingRankSum=0.000;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.10;MQRankSum=-3.573;QD=0.50;ReadPosRankSum=0.426;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:104,27:0.21:131
chr16	16306192	rs116914614	G	T	742.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.031;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=1.435;MLEAC=1;MLEAF=0.500;MQ=47.16;MQRankSum=-0.036;QD=5.38;ReadPosRankSum=0.990;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:93,45:0.33:138
chr16	16350133	.	CT	C	108.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.672;ClippingRankSum=0.000;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=50.72;MQRankSum=-5.574;QD=1.17;ReadPosRankSum=0.557;SOR=0.440;set=HC	GT:AD:AF:DP	0/1:67,26:0.28:93
chr16	16357011	rs111992615	T	C	1097.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:245,67:0.21:312
chr16	16460271	rs199774332	G	A	30.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.967;ClippingRankSum=-0.000;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=40.00;MQRankSum=-0.000;QD=10.26;ReadPosRankSum=-0.000;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:1,2:0.67:3
chr16	17190040	rs3889206	G	T	4113.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr16	17221423	rs4782034	C	T	1155.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr16	17228368	rs12708815	G	A	1171.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:120,61:0.34:181
chr16	17294295	rs11075341	C	T	2276.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:32,92:0.74:124
chr16	17294348	rs35488326	G	A	1041.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.285;ClippingRankSum=0.000;DB;DP=260;ExcessHet=3.0103;FS=2.436;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.05;ReadPosRankSum=-0.130;SOR=0.874;set=HC	GT:AD:AF:DP	0/1:186,71:0.28:257
chr16	17432427	rs4782002	T	C	8890.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:0,330:1.00:330
chr16	17564658	rs117041807	G	C	430.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:14,19:0.58:33
chr16	18549711	.	C	CAA	821.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.928;ClippingRankSum=0.000;DP=58;ExcessHet=3.0103;FS=6.532;MLEAC=1;MLEAF=0.500;MQ=44.86;MQRankSum=-2.673;QD=16.11;ReadPosRankSum=-0.276;SOR=3.981;set=HC	GT:AD:AF:DP	0/1:8,43:0.84:51
chr16	18593648	.	GA	G	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.519;ClippingRankSum=0.000;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.45;MQRankSum=-4.552;QD=0.25;ReadPosRankSum=0.923;SOR=0.632;set=HC	GT:AD:AF:DP	0/1:113,30:0.21:143
chr16	18823379	rs2606556	T	C	6875.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr16	18846429	rs56079655	G	A	1803.77	.	AC=1;AF=0.500;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	0/1:234,106:0.31:340
chr16	18995479	.	G	A	411.77	.	AC=1;AF=0.500;AN=2;DP=19;set=Intersection	GT:AD:AF:DP	0/1:4,15:0.79:19
chr16	19041491	rs4381586	T	C	808.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr16	19041595	rs28583298	G	A	2786.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr16	19049378	rs8043993	A	G	6433.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr16	19051520	rs11074355	A	G	721.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr16	19051549	.	T	A	250.77	.	AC=1;AF=0.500;AN=2;DP=52;set=Intersection	GT:AD:AF:DP	0/1:35,14:0.29:49
chr16	19056069	rs55792501	A	G	475.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr16	19056769	rs12051270	G	A	4311.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr16	19067933	rs17854511	G	A	6644.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr16	19079095	rs4531717	T	G	2806.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr16	19080184	rs4630530	C	T	1261.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr16	19080227	rs75015998	C	CTG	1447.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr16	19083221	rs4782202	A	G	6984.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr16	19085298	rs11074359	C	T	7122.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr16	19127347	rs11074362	C	T	7284.77	.	AC=1;AF=0.500;AN=2;DB;DP=532;set=Intersection	GT:AD:AF:DP	0/1:194,334:0.63:528
chr16	19183957	rs113855661	C	CT	546.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.338;ClippingRankSum=0.000;DB;DP=274;ExcessHet=3.0103;FS=0.631;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.38;ReadPosRankSum=0.967;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:163,67:0.29:230
chr16	19195130	rs11541511	C	T	27137.77	.	AC=2;AF=1.00;AN=2;DB;DP=1019;set=Intersection	GT:AD:AF:DP	1/1:5,1005:1.00:1010
chr16	19236181	rs2072076	C	T	2965.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr16	19310092	rs1548450	T	C	2254.77	.	AC=1;AF=0.500;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	0/1:266,133:0.33:399
chr16	19315621	rs16971804	C	G	173.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:25,10:0.29:35
chr16	19333111	rs8049175	T	C	5395.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr16	19333153	rs8047832	A	C	7790.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chr16	19333224	rs8048432	G	A	6110.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr16	19333241	rs6497343	G	C	5358.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr16	19455284	rs8052298	T	C	739.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr16	19455318	rs144130376	AATGGATGG	A	2045.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr16	19455615	rs4782247	G	A	931.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr16	19460842	rs6497373	A	G	7299.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr16	19471665	rs6497375	T	C	12227.77	.	AC=2;AF=1.00;AN=2;DB;DP=468;set=Intersection	GT:AD:AF:DP	1/1:0,465:1.00:465
chr16	19475099	rs61737709	C	A	2861.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:84,129:0.61:213
chr16	19481220	rs58331737	CTT	C	1409.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.385;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=5.273;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=1.374;QD=14.24;ReadPosRankSum=-0.628;SOR=0.294;set=HC	GT:AD:AF:DP	0/1:36,63:0.64:99
chr16	19481234	rs4444328	T	G	247.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.245;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=3.794;MLEAC=1;MLEAF=0.500;MQ=60.42;MQRankSum=-1.105;QD=2.50;ReadPosRankSum=0.236;SOR=1.334;set=HC	GT:AD:AF:DP	0/1:76,23:0.23:99
chr16	19492898	rs7185836	A	C	1495.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:21,52:0.71:73
chr16	19503598	rs1475962	C	T	5998.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr16	19503770	rs1967950	T	G	1581.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.74;QD=43.94;SOR=1.739;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr16	19503773	rs1967951	T	G	1557.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.74;QD=44.51;SOR=2.115;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr16	19505406	rs1475964	T	C	769.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr16	19505730	rs2245423	T	C	2372.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr16	19505751	rs2856608	G	A	1829.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr16	19508573	rs2187659	A	G	5487.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.57;SOR=1.816;set=HC	GT:AD:AF:DP	1/1:0,132:1.00:132
chr16	19508583	rs2187660	C	G	4991.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.65;SOR=1.992;set=HC	GT:AD:AF:DP	1/1:0,107:1.00:107
chr16	19509333	rs2245086	C	T	7657.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr16	19547747	rs226891	C	G	2402.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:223,120:0.35:343
chr16	19548740	rs17227190	A	G	4459.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:90,190:0.68:280
chr16	19553183	rs17325092	T	C	583.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:71,33:0.32:104
chr16	19580490	rs62026186	T	C	1038.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:149,60:0.29:209
chr16	19580699	rs121235	A	G	5601.77	.	AC=1;AF=0.500;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	0/1:136,238:0.64:374
chr16	19584332	rs371889	A	G	398.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:9,16:0.64:25
chr16	19589695	rs35605554	C	CA	105.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.823;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.71;ReadPosRankSum=0.993;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:47,15:0.24:62
chr16	19598562	rs111461972	G	A	402.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:34,21:0.38:55
chr16	19619602	rs11291600	CT	C	212.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.949;ClippingRankSum=0.000;DB;DP=205;ExcessHet=3.0103;FS=1.762;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.761;QD=1.40;ReadPosRankSum=-0.099;SOR=0.471;set=HC	GT:AD:AF:DP	0/1:111,41:0.27:152
chr16	19716505	rs739565	A	G	7109.77	.	AC=1;AF=0.500;AN=2;DB;DP=533;set=Intersection	GT:AD:AF:DP	0/1:195,329:0.63:524
chr16	19725410	rs79810083	G	A	845.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.035;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=2.921;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.58;ReadPosRankSum=1.878;SOR=1.374;set=HC	GT:AD:AF:DP	0/1:15,36:0.71:51
chr16	19726033	.	A	T	4763.77	.	AC=1;AF=0.500;AN=2;DP=320;set=Intersection	GT:AD:AF:DP	0/1:113,203:0.64:316
chr16	19799962	rs4782283	T	A	361.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr16	19838260	rs16969203	G	A	1230.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:45,53:0.54:98
chr16	19838302	rs75971389	C	T	3489.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:84,91:0.52:175
chr16	19838319	rs79851136	G	C	4159.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:95,122:0.56:217
chr16	19867672	rs6497413	C	G	3213.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:51,145:0.74:196
chr16	19868687	rs2729	G	C	738.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr16	19873107	rs2074427	G	A	745.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:7,31:0.82:38
chr16	19884285	rs2240047	C	T	823.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr16	20043330	rs2147865	T	C	1322.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:113,63:0.36:176
chr16	20052123	rs1379575	G	A	1221.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.506;ClippingRankSum=0.000;DB;DP=290;ExcessHet=3.0103;FS=0.491;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.29;ReadPosRankSum=0.005;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:208,77:0.27:285
chr16	20322425	rs11647569	T	C	1327.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:2,47:0.96:49
chr16	20322439	rs11642182	A	G	1496.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr16	20327474	.	C	T	1021.77	.	AC=1;AF=0.500;AN=2;DP=72;set=Intersection	GT:AD:AF:DP	0/1:26,46:0.64:72
chr16	20328685	rs1129818	T	C	1808.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:174,96:0.36:270
chr16	20334679	rs4411505	C	T	848.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:110,48:0.30:158
chr16	20334807	rs10555368	ACC	A,AC,ACCC	1932.73	.	AC=1,1,0;AF=0.500,0.500,0.00;AN=2;DB;DP=200;set=Intersection	GT:AF:DP	1/2:0.22,0.55:125
chr16	20334932	rs4393582	G	A	2213.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr16	20339131	rs4643330	T	C	559.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:82,36:0.31:118
chr16	20344532	rs111699931	G	A	529.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:8,22:0.73:30
chr16	20355651	rs8054296	G	A	144.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:13,9:0.41:22
chr16	20359633	rs28544423	C	T	7167.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.322;ClippingRankSum=0.000;DB;DP=530;ExcessHet=3.0103;FS=0.531;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.58;ReadPosRankSum=-0.307;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:210,318:0.60:528
chr16	20359831	rs13335818	C	T	4555.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:120,204:0.63:324
chr16	20360101	rs7193058	G	A	930.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:104,51:0.33:155
chr16	20360993	rs71149135	G	GCCACATTC	3859.73	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:72,91:0.56:163
chr16	20361087	rs111285796	T	TTCTGCCAGA	4432.73	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:114,115:0.50:229
chr16	20361950	rs36060036	C	T	4915.77	.	AC=1;AF=0.500;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	0/1:147,233:0.61:380
chr16	20370810	rs9652588	C	T	5507.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.868;ClippingRankSum=0.000;DB;DP=615;ExcessHet=3.0103;FS=1.251;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.04;ReadPosRankSum=1.251;SOR=0.852;set=HC	GT:AD:AF:DP	0/1:443,166:0.27:609
chr16	20370816	rs9652589	C	T	5455.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.588;ClippingRankSum=0.000;DB;DP=608;ExcessHet=3.0103;FS=1.245;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.05;ReadPosRankSum=1.087;SOR=0.816;set=HC	GT:AD:AF:DP	0/1:439,164:0.27:603
chr16	20370981	rs9929710	A	C	560.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:75,29:0.28:104
chr16	20376734	rs8052918	A	G	1225.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:180,71:0.28:251
chr16	20376755	rs8054266	T	C	1656.77	.	AC=1;AF=0.500;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	0/1:245,100:0.29:345
chr16	20386115	rs4522429	T	C	11031.77	.	AC=2;AF=1.00;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	1/1:0,406:1.00:406
chr16	20410488	rs7185940	G	A	5967.77	.	AC=1;AF=0.500;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	0/1:110,270:0.71:380
chr16	20410547	rs9926580	C	T	4600.77	.	AC=1;AF=0.500;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:105,215:0.67:320
chr16	20410669	rs9928648	A	G	724.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:18,29:0.62:47
chr16	20439070	rs12921615	A	G	5534.77	.	AC=1;AF=0.500;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	0/1:121,243:0.67:364
chr16	20439199	rs11859961	G	A	5840.77	.	AC=1;AF=0.500;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	0/1:145,264:0.65:409
chr16	20440953	rs12931611	A	G	585.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:25,29:0.54:54
chr16	20441020	rs12932087	G	A	759.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:44,37:0.46:81
chr16	20441053	rs8062344	C	G	761.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:25,37:0.60:62
chr16	20441077	rs12931877	A	G	253.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.328;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=1.202;MLEAC=1;MLEAF=0.500;MQ=54.30;MQRankSum=-3.221;QD=5.40;ReadPosRankSum=0.773;SOR=0.434;set=HC	GT:AD:AF:DP	0/1:31,16:0.34:47
chr16	20441084	rs8063682	T	C	1398.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr16	20441215	rs8062563	A	G	109.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;MQ=58.23;set=Intersection	GT:AD:AF:DP	0/1:7,5:0.42:12
chr16	20442510	rs35468793	C	T	2756.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:58,121:0.68:179
chr16	20442653	rs34985819	G	A	2431.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:61,109:0.64:170
chr16	20448330	rs11646020	A	G	2482.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:55,116:0.68:171
chr16	20448351	rs71384450	C	T	3373.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:87,152:0.64:239
chr16	20448520	rs7499667	T	C	4284.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.063;ClippingRankSum=0.000;DB;DP=324;ExcessHet=3.0103;FS=3.074;MLEAC=1;MLEAF=0.500;MQ=59.14;MQRankSum=-2.135;QD=13.52;ReadPosRankSum=-0.902;SOR=0.879;set=HC	GT:AD:AF:DP	0/1:130,187:0.59:317
chr16	20448527	rs7499668	T	C	6940.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.918;ClippingRankSum=0.000;DB;DP=313;ExcessHet=3.0103;FS=6.061;MLEAC=1;MLEAF=0.500;MQ=59.11;MQRankSum=-3.127;QD=22.61;ReadPosRankSum=1.311;SOR=1.009;set=HC	GT:AD:AF:DP	0/1:132,175:0.57:307
chr16	20451054	rs199540360	C	G	59.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:22,5:0.19:27
chr16	20451067	rs201039688	GA	G	104.73	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:30,9:0.23:39
chr16	20451086	rs112873171	G	T	219.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:36,13:0.27:49
chr16	20471364	rs6497489	T	C	1648.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:29,71:0.71:100
chr16	20476852	rs7187246	T	C	2506.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:70,113:0.62:183
chr16	20477163	rs7186805	G	C	754.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.525;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=1.795;MLEAC=1;MLEAF=0.500;MQ=56.14;MQRankSum=-3.903;QD=19.35;ReadPosRankSum=-0.527;SOR=1.170;set=HC	GT:AD:AF:DP	0/1:19,20:0.51:39
chr16	20477163	.	GTA	CTC	751	.	AC=1;AF=0.500;AN=2;BRF=0.38;FR=0.5000;HP=2;HapScore=3;MGOF=2;MMLQ=28;MQ=53.76;NF=2;NR=15;PP=751;QD=47.3216396978;SC=ATGCTGTCCTGTATCATATGA;SbPval=0.62;Source=Platypus;TC=33;TCF=4;TCR=29;TR=17;WE=20477173;WS=20477153;set=Platypus	GT:AD:AF:DP	1/0:16,17:0.52:33
chr16	20477165	rs7186307	A	C	754.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.510;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.93;MQRankSum=-3.721;QD=20.40;ReadPosRankSum=-0.823;SOR=0.880;set=HC	GT:AD:AF:DP	0/1:17,20:0.54:37
chr16	20480818	rs28615302	T	C	3511.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:68,154:0.69:222
chr16	20482368	rs1827711	A	G	807.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:24,30:0.56:54
chr16	20482623	rs2271060	G	T	3739.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:80,168:0.68:248
chr16	20482790	rs2271062	C	A	2266.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:44,84:0.66:128
chr16	20486913	rs1634305	G	T	2179.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:31,93:0.75:124
chr16	20487125	rs1629314	T	G	1353.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:43,58:0.57:101
chr16	20488696	rs1700805	A	G	3052.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.708;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=1.182;MLEAC=1;MLEAF=0.500;MQ=44.95;MQRankSum=-2.364;QD=15.82;ReadPosRankSum=-0.884;SOR=0.819;set=HC	GT:AD:AF:DP	0/1:72,121:0.63:193
chr16	20488803	rs1634306	T	A	1652.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.962;ClippingRankSum=0.000;DB;DP=252;ExcessHet=3.0103;FS=0.477;MLEAC=1;MLEAF=0.500;MQ=50.23;MQRankSum=-1.384;QD=6.56;ReadPosRankSum=-0.175;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:159,93:0.37:252
chr16	20489868	rs1634309	A	C	5174.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:84,223:0.73:307
chr16	20490068	rs1634310	A	C	1272.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:15,49:0.77:64
chr16	20492000	rs146233716	A	G	2427.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.22;QD=34.19;SOR=3.489;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr16	20492304	rs1700809	A	T	1572.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.149;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.07;MQRankSum=-2.937;QD=23.83;ReadPosRankSum=-0.172;SOR=0.925;set=HC	GT:AD:AF:DP	0/1:26,40:0.61:66
chr16	20492307	rs1700810	G	A	1572.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.591;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.94;MQRankSum=-2.825;QD=24.20;ReadPosRankSum=-0.331;SOR=0.977;set=HC	GT:AD:AF:DP	0/1:25,40:0.62:65
chr16	20492316	rs1617049	C	T	1167.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.914;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=2.548;MLEAC=1;MLEAF=0.500;MQ=49.39;MQRankSum=-4.294;QD=23.36;ReadPosRankSum=0.706;SOR=1.888;set=HC	GT:AD:AF:DP	0/1:20,30:0.60:50
chr16	20498079	rs2072080	T	G	5717.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr16	20551855	rs28750179	A	G	695.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr16	20552075	rs16970280	G	T	6342.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr16	20554203	rs12933763	C	G	886.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:56,34:0.38:90
chr16	20570661	rs62035059	T	C	2189.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.39;QD=30.00;SOR=1.426;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr16	20599507	rs141896208	C	G	618.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:14,25:0.64:39
chr16	20647921	rs62033279	C	T	93.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:21,7:0.25:28
chr16	20749461	rs9788809	T	C	140.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.848;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.35;ReadPosRankSum=-2.114;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:31,11:0.26:42
chr16	20750498	rs34908456	AT	A	52.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.873;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=12.053;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.64;ReadPosRankSum=-1.506;SOR=0.843;set=HC	GT:AD:AF:DP	0/1:12,8:0.40:20
chr16	20753123	rs234271	T	C	11566.77	.	AC=2;AF=1.00;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	1/1:0,423:1.00:423
chr16	20792188	rs5715	T	C	2925.77	.	AC=1;AF=0.500;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	0/1:237,136:0.36:373
chr16	20796508	rs8058758	T	C	771.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:94,42:0.31:136
chr16	20803249	.	G	GA	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.880;ClippingRankSum=0.000;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.39;ReadPosRankSum=0.341;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:65,16:0.20:81
chr16	20810067	rs3213646	T	C	1242.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:105,58:0.36:163
chr16	20810730	rs7198770	A	G	2714.77	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:219,138:0.39:357
chr16	20811681	rs2301771	C	T	4252.77	.	AC=1;AF=0.500;AN=2;DB;DP=802;set=Intersection	GT:AD:AF:DP	0/1:541,255:0.32:796
chr16	20824697	rs34169933	A	AG	304.73	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:54,15:0.22:69
chr16	20827647	rs5816137	AT	A	297.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.216;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.111;QD=3.97;ReadPosRankSum=-0.757;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:45,30:0.40:75
chr16	20855309	rs9929443	A	G	651.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:95,40:0.30:135
chr16	20860897	rs6654	C	T	162.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:28,9:0.24:37
chr16	20873767	rs7187522	T	G	2722.77	.	AC=1;AF=0.500;AN=2;DB;DP=455;set=Intersection	GT:AD:AF:DP	0/1:294,152:0.34:446
chr16	20926781	rs11424042	C	CA	87.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.169;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=8.686;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.25;ReadPosRankSum=-0.561;SOR=0.053;set=HC	GT:AD:AF:DP	0/1:17,10:0.37:27
chr16	20956098	.	GAC	G	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.479;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=2.409;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.65;ReadPosRankSum=-2.041;SOR=0.193;set=HC	GT:AD:AF:DP	0/1:17,4:0.19:21
chr16	20976787	rs55780603	T	C	664.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:20,25:0.56:45
chr16	21030897	rs3095922	T	C	2851.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr16	21078693	rs861424	T	G	2281.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:74,106:0.59:180
chr16	21116051	rs11074481	T	C	708.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:22,33:0.60:55
chr16	21132298	rs13330317	T	C	2243.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:67,98:0.59:165
chr16	21136477	rs7191215	A	G	4979.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr16	21145648	rs11074483	C	T	3957.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:105,178:0.63:283
chr16	21147885	rs3743698	T	C	4760.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:93,206:0.69:299
chr16	21147999	rs730260	A	G	1473.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:35,56:0.62:91
chr16	21151913	rs72780891	G	T	2821.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:72,128:0.64:200
chr16	21161559	rs57863199	T	TA	1026.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.854;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=1.787;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.63;ReadPosRankSum=0.785;SOR=0.974;set=HC	GT:AD:AF:DP	0/1:49,70:0.59:119
chr16	21190853	rs1063087	A	C	8127.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr16	21209981	rs62033379	C	T	83.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:9,5:0.36:14
chr16	21210006	rs7189430	C	T	289.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:15,14:0.48:29
chr16	21210312	rs16971210	C	T	398.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:47,25:0.35:72
chr16	21216992	rs2242551	A	G	1415.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:206,80:0.28:286
chr16	21221626	rs74755848	C	T	420.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:61,25:0.29:86
chr16	21222672	rs2075520	C	A	3027.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:74,131:0.64:205
chr16	21222941	rs2075521	C	A	612.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:51,30:0.37:81
chr16	21272591	rs14122	G	C	1271.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:40,59:0.60:99
chr16	21273286	rs226048	A	G	633.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:9,22:0.71:31
chr16	21286699	rs2733911	C	T	1238.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:32,49:0.60:81
chr16	21286927	rs226045	A	G	2419.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:47,100:0.68:147
chr16	21289626	rs3848259	C	G	2937.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:102,137:0.57:239
chr16	21388110	rs2686119	T	C	2768.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:2,109:0.98:111
chr16	21396859	rs368310563	CT	C	444.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.179;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=2.173;MLEAC=1;MLEAF=0.500;MQ=53.58;MQRankSum=-9.540;QD=2.12;ReadPosRankSum=-0.091;SOR=0.921;set=HC	GT:AD:AF:DP	0/1:145,65:0.31:210
chr16	21397273	rs369341030	CTG	C	149.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.210;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=3.647;MLEAC=1;MLEAF=0.500;MQ=54.98;MQRankSum=-4.085;QD=4.05;ReadPosRankSum=-0.231;SOR=0.235;set=HC	GT:AD:AF:DP	0/1:28,9:0.24:37
chr16	21531111	rs7197243	T	C	256.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.695;ClippingRankSum=0.000;DB;DP=233;ExcessHet=3.0103;FS=1.491;MLEAC=1;MLEAF=0.500;MQ=57.49;MQRankSum=-2.675;QD=1.12;ReadPosRankSum=0.538;SOR=0.535;set=HC	GT:AD:AF:DP	0/1:196,34:0.15:230
chr16	21531494	rs42138	T	C	13007.77	.	AC=2;AF=1.00;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	1/1:0,477:1.00:477
chr16	21531609	rs42139	C	T	1676.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:124,81:0.40:205
chr16	21531681	rs42140	C	G	856.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:64,42:0.40:106
chr16	21608472	rs194548	G	A	81.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.446;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.95;ReadPosRankSum=0.251;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:35,7:0.17:42
chr16	21623944	.	CT	C	375.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.241;ClippingRankSum=0.000;DP=121;ExcessHet=3.0103;FS=0.939;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.35;ReadPosRankSum=1.063;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:60,52:0.46:112
chr16	21652720	rs1055740	A	G	177.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:16,8:0.33:24
chr16	21658266	rs3091404	C	T	964.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:83,50:0.38:133
chr16	21689775	.	G	GTA	64	.	AC=1;AF=0.500;AN=2;BRF=0.3;FR=0.5000;HP=2;HapScore=2;MGOF=13;MMLQ=28;MQ=60.0;NF=1;NR=2;PP=64;QD=24.6666666667;SC=GTGTGTGTGTGTATATATATA;SbPval=0.29;Source=Platypus;TC=17;TCF=11;TCR=6;TR=3;WE=21689783;WS=21689765;set=Platypus	GT:AD:AF:DP	1/0:14,3:0.18:17
chr16	21689791	rs215894	T	A	217.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.647;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=1.792;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.07;ReadPosRankSum=-0.122;SOR=0.268;set=HC	GT:AD:AF:DP	0/1:15,12:0.44:27
chr16	21696083	rs201146251	ATTATTT	A	572.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.41;QD=38.18;SOR=1.911;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr16	21696458	rs149825617	A	AT	1036.73	.	AC=1;AF=0.500;AN=2;DB;DP=51;MQ=60.42;set=Intersection	GT:AD:AF:DP	0/1:17,33:0.66:50
chr16	21698988	rs34615076	CT	C	43.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.073;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.46;ReadPosRankSum=-0.900;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:19,11:0.37:30
chr16	21730449	rs215901	C	T	553.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:75,33:0.31:108
chr16	21732553	.	TACAC	T	507.06	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.109;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=2.520;MLEAC=1;MLEAF=0.500;MQ=60.65;MQRankSum=0.923;QD=24.15;ReadPosRankSum=-0.412;SOR=1.938;set=HC	GT:AD:AF:DP	0/1:6,15:0.71:21
chr16	21739430	rs4408531	T	C	1385.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:27,55:0.67:82
chr16	21747556	rs56065183	C	T	1266.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:35,52:0.60:87
chr16	21763602	.	ATG	A	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.292;ClippingRankSum=0.000;DP=23;ExcessHet=3.0103;FS=5.798;MLEAC=1;MLEAF=0.500;MQ=56.23;MQRankSum=-0.597;QD=1.53;ReadPosRankSum=1.364;SOR=2.494;set=HC	GT:AD:AF:DP	0/1:18,4:0.18:22
chr16	21771908	rs74415880	A	G	153.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:26,11:0.30:37
chr16	21821976	rs148768203	C	CA	582.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.531;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.98;MQRankSum=-1.728;QD=16.19;ReadPosRankSum=-0.591;SOR=2.517;set=HC	GT:AD:AF:DP	1/1:3,33:0.92:36
chr16	21970546	rs2967178	T	C	964.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:35,44:0.56:79
chr16	21992122	rs2965803	T	C	774.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr16	22012146	rs143239876	AATG	A,AATGATG	1084.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.091;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=2.941;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.20;MQRankSum=0.375;QD=29.32;ReadPosRankSum=-0.037;SOR=1.911;set=HC	GT:AD:AF:DP	1/2:2,26,9:0.70,0.24:37
chr16	22094860	rs2287964	A	T	297.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:12,12:0.50:24
chr16	22108070	rs147766674	A	C	433.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:58,25:0.30:83
chr16	22128052	rs11649656	TT	GC	11579.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr16	22149612	.	CTG	C	218.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.333;ClippingRankSum=0.000;DP=74;ExcessHet=3.0103;FS=1.551;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.08;ReadPosRankSum=0.742;SOR=0.357;set=HC	GT:AD:AF:DP	0/1:56,15:0.21:71
chr16	22161136	rs1991020	T	C	4791.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr16	22256096	rs373963789	G	A	2930.77	.	AC=1;AF=0.500;AN=2;DB;DP=525;set=Intersection	GT:AD:AF:DP	0/1:347,168:0.33:515
chr16	22269867	rs4783453	A	G	8942.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chr16	22328094	rs2290830	G	T	3463.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr16	22448133	rs56330751	CA	C	286.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.908;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.75;MQRankSum=-0.966;QD=2.65;ReadPosRankSum=0.049;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:65,43:0.40:108
chr16	22579730	rs376957934	A	ATG	253.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.142;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=6.331;MLEAC=1;MLEAF=0.500;MQ=56.03;MQRankSum=-0.966;QD=2.64;ReadPosRankSum=-0.878;SOR=1.791;set=HC	GT:AD:AF:DP	0/1:69,27:0.28:96
chr16	22587868	rs4783422	G	C	84.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.266;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=13.823;MLEAC=1;MLEAF=0.500;MQ=48.72;MQRankSum=-6.955;QD=0.68;ReadPosRankSum=0.294;SOR=2.618;set=HC	GT:AD:AF:DP	0/1:111,14:0.11:125
chr16	22844383	rs71378486	G	C	2714.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr16	23079353	rs8047644	T	C	1196.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr16	23098469	rs115885362	T	C	2855.77	.	AC=1;AF=0.500;AN=2;DB;DP=506;set=Intersection	GT:AD:AF:DP	0/1:334,167:0.33:501
chr16	23221183	rs5740	A	G	11316.77	.	AC=2;AF=1.00;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	1/1:0,424:1.00:424
chr16	23221238	rs4281710	A	G	7295.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr16	23360199	rs238547	T	C	2268.77	.	AC=1;AF=0.500;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	0/1:261,129:0.33:390
chr16	23364081	rs63982	A	C	1247.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:118,65:0.36:183
chr16	23389946	rs72654345	C	T	1611.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.890;ClippingRankSum=0.000;DB;DP=378;ExcessHet=3.0103;FS=1.422;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.31;ReadPosRankSum=-0.829;SOR=0.589;set=HC	GT:AD:AF:DP	0/1:274,100:0.27:374
chr16	23400494	rs250586	C	A	1301.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr16	23457290	rs71379679	TA	T	125.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.687;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=4.496;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=2.260;QD=2.33;ReadPosRankSum=0.170;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:34,20:0.37:54
chr16	23486197	rs11074559	A	G	2208.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.27;SOR=1.193;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr16	23489711	rs1135045	C	G	2845.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr16	23489907	rs143933289	C	T	2036.77	.	AC=1;AF=0.500;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	0/1:283,115:0.29:398
chr16	23490353	rs4968008	T	G	10722.77	.	AC=2;AF=1.00;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	1/1:1,411:1.00:412
chr16	23506940	rs722069	G	A	1658.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr16	23521643	rs1071685	G	C	5950.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr16	23521750	rs2285522	T	C	2690.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr16	23521780	rs2285521	C	T	1488.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr16	23532990	rs1060170	G	A	1041.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:10,41:0.80:51
chr16	23533008	rs11074565	G	A	1941.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr16	23535680	rs1468138	A	C	5672.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr16	23536366	rs6497670	T	C	1348.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr16	23536684	rs6497671	T	C	5684.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr16	23540798	rs2072062	C	T	6743.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr16	23541223	rs2072061	G	A	4692.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr16	23546561	rs2073951	G	C	4358.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr16	23555726	rs2369009	C	T	2037.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr16	23557718	rs7196534	T	C	3782.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr16	23557790	rs4968019	T	C	2017.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr16	23563501	rs7187920	C	T	6382.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr16	23606895	rs240744	G	T	7411.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr16	23615042	rs35294437	TA	T	95.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.542;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.83;ReadPosRankSum=-0.345;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:89,26:0.23:115
chr16	23625463	rs249936	A	T	1195.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr16	23678447	.	G	T	693.77	.	AC=1;AF=0.500;AN=2;DP=50;set=Intersection	GT:AD:AF:DP	0/1:16,30:0.65:46
chr16	23700231	rs112964547	C	CT	38.73	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:28,8:0.22:36
chr16	23702159	rs376486441	C	T	206.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.804;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.04;ReadPosRankSum=1.540;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:53,15:0.22:68
chr16	23717833	rs36047689	G	A	844.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:98,50:0.34:148
chr16	23718582	.	T	C	628.77	.	AC=1;AF=0.500;AN=2;DP=45;set=Intersection	GT:AD:AF:DP	0/1:15,29:0.66:44
chr16	23721601	rs4967959	T	G	709.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:145,46:0.24:191
chr16	23722042	rs3899652	T	C	517.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:55,27:0.33:82
chr16	23724753	rs3809682	G	A	1195.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:140,67:0.32:207
chr16	23768380	rs5816221	T	TG	2218.73	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr16	23768710	rs109592	C	T	603.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:34,27:0.44:61
chr16	23768802	rs80950	T	G	2158.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr16	23848762	rs3729883	G	A	609.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:23,30:0.57:53
chr16	24043676	rs1971276	C	G	824.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:25,37:0.60:62
chr16	24166130	rs432998	T	C	1213.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.145;ClippingRankSum=0.000;DB;DP=215;ExcessHet=3.0103;FS=0.540;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.84;ReadPosRankSum=1.567;SOR=0.640;set=HC	GT:AD:AF:DP	0/1:136,72:0.35:208
chr16	24185815	rs72154122	CT	C	308.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.715;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=4.112;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.97;ReadPosRankSum=1.295;SOR=1.177;set=HC	GT:AD:AF:DP	0/1:107,50:0.32:157
chr16	24202458	rs3729904	C	T	3268.77	.	AC=1;AF=0.500;AN=2;DB;DP=527;set=Intersection	GT:AD:AF:DP	0/1:340,180:0.35:520
chr16	24202615	rs198145	A	G	1534.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:177,86:0.33:263
chr16	24357998	rs5816249	T	TG	3096.73	.	AC=2;AF=1.00;AN=2;DB;DP=91;MQ=60.12;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr16	24564879	rs72133882	GTA	G	833.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.793;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=2.815;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=0.856;QD=16.35;ReadPosRankSum=0.099;SOR=0.321;set=HC	GT:AD:AF:DP	0/1:17,34:0.67:51
chr16	24574691	rs66509757	CT	C	305.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.725;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.317;QD=2.53;ReadPosRankSum=1.030;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:76,45:0.37:121
chr16	24578458	rs7195386	T	C	4179.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:115,173:0.60:288
chr16	24675399	rs56765650	C	T	1146.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr16	24676090	rs200920565	TCACACACACACACACACA	T	413.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.573;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=2.515;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.58;ReadPosRankSum=-1.489;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:4,11:0.73:15
chr16	24741005	.	TCGG	T	2542.73	.	AC=2;AF=1.00;AN=2;DP=77;set=Intersection	GT:AD:AF:DP	1/1:1,59:0.98:60
chr16	24741686	rs7202252	T	C	5357.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr16	24801979	rs13336754	C	T	9146.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	1/1:0,334:1.00:334
chr16	24807165	rs1030211	G	A	2687.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr16	24820823	rs56154395	CA	C	410.86	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.649;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=1.323;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.47;ReadPosRankSum=1.227;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:14,41:0.75:55
chr16	24838988	rs12933971	C	T	3322.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr16	24888646	rs11074656	T	C	6827.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:1,248:1.00:249
chr16	24902194	rs274081	T	C	6861.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr16	24918048	rs17772929	C	T	18698.77	.	AC=2;AF=1.00;AN=2;DB;DP=692;set=Intersection	GT:AD:AF:DP	1/1:0,691:1.00:691
chr16	24919245	rs113206122	C	CAGGGA	3683.73	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr16	24921854	rs201159355	A	ATT	2318.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.016;ClippingRankSum=0.000;DB;DP=240;ExcessHet=3.0103;FS=0.711;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=0.000;QD=12.20;ReadPosRankSum=-1.325;SOR=0.623;set=HC	GT:AD:AF:DP	0/1:65,125:0.66:190
chr16	24921945	rs17178990	C	A	497.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:38,21:0.36:59
chr16	24923012	rs112544021	CT	C	99.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=11.08;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr16	24931691	rs55808472	G	A	790.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:78,40:0.34:118
chr16	24947131	rs72770485	T	G	1420.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:125,75:0.38:200
chr16	24955183	rs17624477	T	C	1719.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:158,94:0.37:252
chr16	24958985	rs16974243	G	A	707.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:64,34:0.35:98
chr16	24990136	rs58340349	G	GA	56.73	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:5,3:0.38:8
chr16	24990187	rs56027541	TA	T	231.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.348;ClippingRankSum=-0.000;DB;DP=24;ExcessHet=3.0103;FS=4.228;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.59;ReadPosRankSum=-2.287;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:2,18:0.90:20
chr16	25043277	rs11074669	G	A	17380.77	.	AC=2;AF=1.00;AN=2;DB;DP=671;set=Intersection	GT:AD:AF:DP	1/1:0,666:1.00:666
chr16	25066321	rs67051289	A	AG	103	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.16;QD=25.75;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr16	25066332	rs12924642	A	C	42.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=21.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr16	25137289	rs7189229	G	C	677.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr16	25137385	rs11861481	G	A	1052.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:108,56:0.34:164
chr16	25137449	rs7188975	A	T	1947.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:103,99:0.49:202
chr16	25163017	rs139504024	G	GGTGTGT,GGTGTGTGT	2240.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.92;QD=45.73;SOR=7.658;set=HC	GT:AD:AF:DP	1/2:1,14,34:0.29,0.69:49
chr16	25172307	rs111379361	A	AT	993.73	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:14,58:0.81:72
chr16	25180610	rs6497812	G	A	957.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr16	25239805	rs2287798	G	C	4492.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr16	25255242	rs8059494	T	A	9036.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:0,329:1.00:329
chr16	25258780	rs36001886	T	A	1968.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr16	25264196	rs4787702	G	A	708.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr16	25264440	rs11643089	T	C	1482.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr16	25268368	rs4787310	A	G	13110.77	.	AC=2;AF=1.00;AN=2;DB;DP=498;set=Intersection	GT:AD:AF:DP	1/1:3,490:0.99:493
chr16	25704145	rs2943336	A	G	2071.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr16	25944544	rs117559033	C	T	511.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:63,28:0.31:91
chr16	25944700	rs4303490	A	G	7106.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr16	27215267	rs877585	G	A	2121.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr16	27215380	rs908382	A	C	5982.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr16	27222442	.	CT	C	585.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.387;ClippingRankSum=0.000;DP=226;ExcessHet=3.0103;FS=4.477;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.288;QD=2.93;ReadPosRankSum=1.559;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:115,85:0.42:200
chr16	27222618	rs62028352	C	T	1702.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:36,70:0.66:106
chr16	27227168	rs11645703	T	G	3684.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:77,155:0.67:232
chr16	27244548	rs28456036	A	G	1020.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:31,42:0.58:73
chr16	27246617	rs17856580	T	C	3103.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:56,136:0.71:192
chr16	27253059	rs28363677	G	A	837.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr16	27364158	rs3024610	C	T	1394.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr16	27367334	rs4787423	C	T	3567.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.66;SOR=1.288;set=HC	GT:AD:AF:DP	1/1:0,129:1.00:129
chr16	27367405	rs36125482	CT	C	975.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.70;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr16	27367414	rs145435809	T	C	984.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.96;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr16	27370932	rs138640688	AGTG	A	1222.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr16	27371158	rs3024660	C	T	4931.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr16	27414378	rs6498021	T	G	6502.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:1,239:1.00:240
chr16	27441283	rs179760	A	G	5339.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr16	27456613	rs963154	G	C	1425.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:43,60:0.58:103
chr16	27457158	rs3093375	T	G	369.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:13,14:0.52:27
chr16	27457518	rs3093377	C	G	870.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:19,35:0.65:54
chr16	27494877	rs4787963	A	C	1557.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:168,82:0.33:250
chr16	27510117	rs11452553	C	CA	5033.73	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr16	27561584	rs4787969	G	A	6894.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr16	27629661	rs4787980	G	C	2143.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr16	27642249	rs233453	A	G	1771.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr16	27666204	rs233470	A	G	1097.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr16	27752314	rs5816442	T	TC	807.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr16	27772901	rs4787984	G	A	9581.77	.	AC=2;AF=1.00;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	1/1:0,361:1.00:361
chr16	27777831	rs8043555	A	G	4840.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr16	27781309	rs11644502	G	A	1393.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:117,72:0.38:189
chr16	27784497	rs117316062	G	A	2003.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:26,87:0.77:113
chr16	27819065	rs1645358	C	T	534.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:23,22:0.49:45
chr16	27856156	.	T	C	172	.	AC=2;AF=1.00;AN=2;BRF=0.16;FR=1.0000;HP=5;HapScore=2;MGOF=1;MMLQ=25;MQ=60.0;NF=0;NR=7;PP=172;QD=29.5387446496;SC=CCTCCAACTCTCCCCATTTCT;SbPval=1.0;Source=Platypus;TC=7;TCF=0;TCR=7;TR=7;WE=27856164;WS=27856146;set=Platypus	GT:AD:AF:DP	1/1:0,7:1.00:7
chr16	27861762	rs9923711	C	T	64.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.920;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=7.794;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.04;ReadPosRankSum=-0.278;SOR=2.030;set=HC	GT:AD:AF:DP	0/1:53,9:0.15:62
chr16	27861785	rs9923715	C	A	100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.583;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=10.100;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.46;ReadPosRankSum=-0.074;SOR=2.372;set=HC	GT:AD:AF:DP	0/1:58,11:0.16:69
chr16	27896017	rs35025078	C	G	1772.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:133,89:0.40:222
chr16	27974418	rs2051742	T	C	618.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:31,27:0.47:58
chr16	27974487	rs2051743	T	C	1179.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:105,66:0.39:171
chr16	28123226	rs205384	G	A	1961.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:210,109:0.34:319
chr16	28132951	rs33048	T	C	1286.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:121,71:0.37:192
chr16	28133152	rs39998	C	A	554.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:84,34:0.29:118
chr16	28137248	rs39631	C	A	1203.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:158,69:0.30:227
chr16	28143489	rs9930464	C	T	608.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr16	28157351	rs28379290	T	C	755.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr16	28167914	rs10445001	C	A	902.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.682;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=5.233;MLEAC=1;MLEAF=0.500;MQ=60.48;MQRankSum=-2.032;QD=13.68;ReadPosRankSum=0.032;SOR=1.431;set=HC	GT:AD:AF:DP	0/1:28,38:0.58:66
chr16	28167920	rs34751450	C	CAA	365.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.267;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=2.814;MLEAC=1;MLEAF=0.500;MQ=60.60;MQRankSum=2.453;QD=7.46;ReadPosRankSum=1.534;SOR=0.284;set=HC	GT:AD:AF:DP	0/1:32,17:0.35:49
chr16	28181306	rs28479048	A	G	1926.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr16	28181378	rs9927275	C	G	205.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:11,10:0.48:21
chr16	28328916	rs113394773	C	T	4212.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.769;ClippingRankSum=0.000;DB;DP=284;ExcessHet=3.0103;FS=3.497;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.15;ReadPosRankSum=0.395;SOR=0.790;set=HC	GT:AD:AF:DP	0/1:93,185:0.67:278
chr16	28506872	rs149271	A	G	887.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:103,51:0.33:154
chr16	28507245	rs151136790	A	G	923.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:26,43:0.62:69
chr16	28507397	rs148114931	TGGGACAGCCTCAGGAGGGGAGGAGGCC	T	642.73	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:22,19:0.46:41
chr16	28507644	rs180743	C	G	1012.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:154,58:0.27:212
chr16	28508048	rs180744	A	G	2485.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:211,79:0.27:290
chr16	28508069	rs151174	C	T	2436.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.309;ClippingRankSum=0.000;DB;DP=289;ExcessHet=3.0103;FS=1.022;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.52;ReadPosRankSum=0.667;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:210,76:0.27:286
chr16	28508447	rs40831	A	G	842.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:132,53:0.29:185
chr16	28508716	rs40832	T	C	4867.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr16	28510393	rs40834	C	T	706.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:122,44:0.27:166
chr16	28511206	rs147413292	C	G	2034.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.497;ClippingRankSum=0.000;DB;DP=331;ExcessHet=3.0103;FS=4.556;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=-1.917;QD=6.34;ReadPosRankSum=0.439;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:208,113:0.35:321
chr16	28513403	rs181206	A	G	1445.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:93,76:0.45:169
chr16	28513530	rs181207	C	T	441.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:43,27:0.39:70
chr16	28600091	rs62034359	C	T	113.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.775;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.17;ReadPosRankSum=1.280;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:14,8:0.36:22
chr16	28600201	rs112479807	G	GT	133.73	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:30,10:0.25:40
chr16	28603393	rs27742	T	C	194.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr16	28603655	rs1059491	T	G	1497.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:174,82:0.32:256
chr16	28604686	rs3743963	A	G	2267.77	.	AC=1;AF=0.500;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	0/1:228,126:0.36:354
chr16	28607070	rs4149406	A	G	854.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:82,47:0.36:129
chr16	28607228	rs1690407	A	G	64.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.082;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.95;MQRankSum=-3.126;QD=4.63;ReadPosRankSum=-1.073;SOR=1.426;set=HC	GT:AD:AF:DP	0/1:11,3:0.21:14
chr16	28607232	rs1136703	A	G	67.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.214;ClippingRankSum=0.000;DB;DP=13;ExcessHet=3.0103;FS=2.774;MLEAC=1;MLEAF=0.500;MQ=55.32;MQRankSum=-3.323;QD=5.21;ReadPosRankSum=-1.600;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:10,3:0.23:13
chr16	28617485	rs1801030	C	T	9318.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	1/1:0,361:1.00:361
chr16	28617595	rs4149393	A	G	206.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.686;ClippingRankSum=0.000;DB;DP=328;ExcessHet=3.0103;FS=1.287;MLEAC=1;MLEAF=0.500;MQ=59.43;MQRankSum=-10.536;QD=0.63;ReadPosRankSum=2.422;SOR=0.802;set=HC	GT:AD:AF:DP	0/1:285,43:0.13:328
chr16	28618065	rs3020806	A	T	520.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.586;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=1.577;MLEAC=1;MLEAF=0.500;MQ=59.08;MQRankSum=-5.570;QD=5.60;ReadPosRankSum=-0.174;SOR=0.305;set=HC	GT:AD:AF:DP	0/1:75,18:0.19:93
chr16	28618068	rs74752114	G	A	496.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.020;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=1.455;MLEAC=1;MLEAF=0.500;MQ=59.13;MQRankSum=-5.777;QD=5.02;ReadPosRankSum=0.116;SOR=0.376;set=HC	GT:AD:AF:DP	0/1:81,18:0.18:99
chr16	28618071	rs3020805	C	G	468.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.591;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=1.421;MLEAC=1;MLEAF=0.500;MQ=59.18;MQRankSum=-5.945;QD=4.51;ReadPosRankSum=0.465;SOR=0.393;set=HC	GT:AD:AF:DP	0/1:86,18:0.17:104
chr16	28618237	rs9282862	T	C	1991.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=893;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.24;ReadPosRankSum=-0.041;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:712,176:0.20:888
chr16	28618238	rs7499134	A	G	27369.77	.	AC=2;AF=1.00;AN=2;DB;DP=897;set=Intersection	GT:AD:AF:DP	1/1:0,892:1.00:892
chr16	28618446	rs2925623	T	C	833.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.069;ClippingRankSum=0.000;DB;DP=459;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.28;MQRankSum=-6.283;QD=1.85;ReadPosRankSum=-0.460;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:374,77:0.17:451
chr16	28618545	rs2925624	G	T	607.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.903;ClippingRankSum=0.000;DB;DP=377;ExcessHet=3.0103;FS=0.506;MLEAC=1;MLEAF=0.500;MQ=59.12;MQRankSum=-11.457;QD=1.63;ReadPosRankSum=0.089;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:310,63:0.17:373
chr16	28618636	rs3020804	A	G	587.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.857;ClippingRankSum=0.000;DB;DP=321;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.11;MQRankSum=-6.871;QD=1.87;ReadPosRankSum=1.990;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:255,59:0.19:314
chr16	28618708	rs11648192	C	T	2323.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:21,90:0.81:111
chr16	28619685	rs142537541	G	A	2443.77	.	AC=1;AF=0.500;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	0/1:240,131:0.35:371
chr16	28619911	rs1126447	T	C	1792.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.133;ClippingRankSum=0.000;DB;DP=318;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.34;MQRankSum=-10.249;QD=5.71;ReadPosRankSum=-0.968;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:252,62:0.20:314
chr16	28619920	rs1126446	A	G	1786.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.276;ClippingRankSum=0.000;DB;DP=309;ExcessHet=3.0103;FS=1.753;MLEAC=1;MLEAF=0.500;MQ=59.27;MQRankSum=-10.075;QD=5.86;ReadPosRankSum=-2.956;SOR=0.558;set=HC	GT:AD:AF:DP	0/1:243,62:0.20:305
chr16	28620800	rs3760091	C	G	7890.77	.	AC=1;AF=0.500;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	0/1:87,334:0.79:421
chr16	28621311	rs2077412	T	C	907.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.302;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=7.395;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.40;ReadPosRankSum=-0.457;SOR=1.242;set=HC	GT:AD:AF:DP	0/1:115,53:0.32:168
chr16	28631314	rs141320733	T	TTGTGTG	176.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:18,10:0.36:28
chr16	28631332	.	G	GTGTGTA	252	.	AC=1;AF=0.500;AN=2;BRF=0.38;FR=0.5000;HP=2;HapScore=2;MGOF=14;MMLQ=28;MQ=60.0;NF=4;NR=3;PP=252;QD=37.0;SC=GTGTGTGTGTGTATATACACA;SbPval=0.19;Source=Platypus;TC=21;TCF=7;TCR=14;TR=7;WE=28631340;WS=28631322;set=Platypus	GT:AD:AF:DP	0/1:14,7:0.33:21
chr16	28631360	rs28410083	A	T	499.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:25,27:0.52:52
chr16	28734477	rs202014506	G	T	686.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.984;ClippingRankSum=0.000;DB;DP=391;ExcessHet=3.0103;FS=0.592;MLEAC=1;MLEAF=0.500;MQ=49.54;MQRankSum=-0.517;QD=1.78;ReadPosRankSum=0.198;SOR=0.592;set=HC	GT:AD:AF:DP	0/1:322,64:0.17:386
chr16	28835680	rs149808056	T	TG	45.73	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:20,5:0.20:25
chr16	28837203	rs62036622	T	G	552.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:59,29:0.33:88
chr16	28837515	rs8049439	T	C	393.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.419;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.861;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.14;ReadPosRankSum=-0.612;SOR=0.583;set=HC	GT:AD:AF:DP	0/1:68,27:0.28:95
chr16	28838073	rs12448482	A	G	256.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.322;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=8.784;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.33;ReadPosRankSum=0.865;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:61,16:0.21:77
chr16	28842257	.	C	CA	87.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.290;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=9.719;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.57;ReadPosRankSum=-1.509;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:42,14:0.25:56
chr16	28842311	rs4344749	A	G	2656.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr16	28844068	rs7498491	T	A	436.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:52,25:0.32:77
chr16	28844284	rs62036626	A	G	562.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.206;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=0.816;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.41;ReadPosRankSum=1.148;SOR=0.563;set=HC	GT:AD:AF:DP	0/1:74,30:0.29:104
chr16	28844365	rs62036657	G	A	1203.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:144,69:0.32:213
chr16	28846840	rs56404918	T	G	733.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:62,33:0.35:95
chr16	28846866	rs55719896	G	A	812.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:70,36:0.34:106
chr16	28847149	rs55830740	G	C	2992.77	.	AC=1;AF=0.500;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	0/1:237,151:0.39:388
chr16	28847246	rs12928404	T	C	1495.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:84,60:0.42:144
chr16	28855522	rs61737565	G	C	2414.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.705;ClippingRankSum=0.000;DB;DP=502;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.83;ReadPosRankSum=-0.319;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:361,139:0.28:500
chr16	28855727	rs4788099	A	G	2262.77	.	AC=1;AF=0.500;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	0/1:268,129:0.32:397
chr16	28857645	rs7187776	A	G	457.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.030;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=1.916;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.32;ReadPosRankSum=-0.191;SOR=0.480;set=HC	GT:AD:AF:DP	0/1:78,28:0.26:106
chr16	28875122	rs7198606	T	G	487.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.552;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.84;ReadPosRankSum=0.789;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:96,31:0.24:127
chr16	28875204	rs11864750	A	T	237.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.665;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=3.095;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.55;ReadPosRankSum=-0.854;SOR=1.232;set=HC	GT:AD:AF:DP	0/1:55,12:0.18:67
chr16	28875214	.	AGCCGCCGCCGCC	A	190.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.984;ClippingRankSum=0.000;DP=68;ExcessHet=3.0103;FS=1.454;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.85;ReadPosRankSum=-1.761;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:56,11:0.16:67
chr16	28883241	rs7498665	A	G	1355.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:124,68:0.35:192
chr16	28883327	rs28433345	T	C	595.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:43,31:0.42:74
chr16	28883841	rs62037369	C	T	4205.77	.	AC=1;AF=0.500;AN=2;DB;DP=589;set=Intersection	GT:AD:AF:DP	0/1:361,217:0.38:578
chr16	28890131	rs62037371	C	A	1795.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:205,97:0.32:302
chr16	28893724	rs5816477	ACT	A	628.73	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:51,20:0.28:71
chr16	28896015	rs11642449	C	T	884.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.802;ClippingRankSum=0.000;DB;DP=226;ExcessHet=3.0103;FS=1.888;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.04;ReadPosRankSum=-0.606;SOR=0.886;set=HC	GT:AD:AF:DP	0/1:156,63:0.29:219
chr16	28898793	rs6565259	T	C	2510.77	.	AC=1;AF=0.500;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	0/1:240,137:0.36:377
chr16	28903763	rs200957871	CTG	C	1075.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.069;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=31.64;ReadPosRankSum=-0.469;SOR=1.244;set=HC	GT:AD:AF:DP	0/1:7,27:0.79:34
chr16	28903764	.	TGTAA	T	1132	.	AC=1;AF=0.500;AN=2;BRF=0.3;FR=0.5000;HP=1;HapScore=2;MGOF=1;MMLQ=28;MQ=60.0;NF=1;NR=16;PP=1132;QD=69.1176470588;SC=TGAGAAAGGCTGTAACCTTGG;SbPval=0.54;Source=Platypus;TC=22;TCF=1;TCR=21;TR=17;WE=28903777;WS=28903754;set=Platypus	GT:AD:AF:DP	1/0:5,17:0.77:22
chr16	28903767	rs200961662	AAC	A	1072.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.953;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=30.65;ReadPosRankSum=-0.021;SOR=1.035;set=HC	GT:AD:AF:DP	0/1:8,27:0.77:35
chr16	28903769	.	C	A	1038	.	AC=1;AF=0.500;AN=2;BRF=0.3;FR=0.5000;HP=2;HapScore=2;MGOF=1;MMLQ=28;MQ=60.0;NF=3;NR=16;PP=1038;QD=56.4616427656;SC=AAGGCTGTAACCTTGGCTCCT;SbPval=0.56;Source=Platypus;TC=26;TCF=4;TCR=22;TR=19;WE=28903777;WS=28903754;set=Platypus	GT:AD:AF:DP	1/0:7,19:0.73:26
chr16	28906084	rs9931989	G	C	4091.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:76,185:0.71:261
chr16	28913787	rs7189927	T	C	1195.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:42,53:0.56:95
chr16	28915433	rs2071342	A	C	3206.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:64,132:0.67:196
chr16	28915527	rs10499	G	A	7674.77	.	AC=1;AF=0.500;AN=2;DB;DP=565;set=Intersection	GT:AD:AF:DP	0/1:204,359:0.64:563
chr16	28922149	rs11646653	C	T	10513.77	.	AC=2;AF=1.00;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	1/1:0,400:1.00:400
chr16	28925978	rs3924376	T	C	8813.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr16	28944396	rs2904880	C	G	6943.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr16	28944700	rs35979293	G	T	3993.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:112,179:0.62:291
chr16	28950051	rs34763945	G	A	2184.77	.	AC=1;AF=0.500;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	0/1:215,120:0.36:335
chr16	28962755	rs12449272	G	A	358.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:9,15:0.62:24
chr16	28993049	rs6565300	A	C	5291.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr16	28993649	rs11301233	AC	A	7352.73	.	AC=1;AF=0.500;AN=2;DB;DP=460;set=Intersection	GT:AD:AF:DP	0/1:158,297:0.65:455
chr16	28995757	rs7140	C	A	4931.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.837;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=3.603;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.23;ReadPosRankSum=-1.034;SOR=0.669;set=HC	GT:AD:AF:DP	1/1:1,187:0.99:188
chr16	28997997	rs1131543	G	A	3321.77	.	AC=1;AF=0.500;AN=2;DB;DP=494;set=Intersection	GT:AD:AF:DP	0/1:311,181:0.37:492
chr16	28998111	rs4788115	T	A	4211.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:100,191:0.66:291
chr16	29001460	rs9929088	A	C	11707.77	.	AC=2;AF=1.00;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	1/1:0,423:1.00:423
chr16	29088128	rs67548829	TACAACTATTGCTGTTATACTAAAGACCAATAGAAATAGCAAGATTAATTAAGATACCAGTTGAAA	T	488.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.122;ClippingRankSum=0.000;DB;DP=358;ExcessHet=3.0103;FS=31.729;MLEAC=1;MLEAF=0.500;MQ=56.35;MQRankSum=1.901;QD=1.47;ReadPosRankSum=-4.120;SOR=2.992;set=HC	GT:AD:AF:DP	0/1:297,35:0.11:332
chr16	29088221	rs2442141	A	G	137.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.317;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=8.967;MLEAC=1;MLEAF=0.500;MQ=54.14;MQRankSum=-2.123;QD=1.91;ReadPosRankSum=-0.562;SOR=0.034;set=HC	GT:AD:AF:DP	0/1:60,12:0.17:72
chr16	29097556	rs61151630	C	CAT	3233.73	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:145,89:0.38:234
chr16	29102189	rs56374327	C	CT	3364.73	.	AC=2;AF=1.00;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.45;QD=24.56;SOR=1.043;set=HC	GT:AD:AF:DP	1/1:0,137:1.00:137
chr16	29113263	rs149472124	C	T	1167.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:92,51:0.36:143
chr16	29113497	rs11366120	AT	A	6923.73	.	AC=2;AF=1.00;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	1/1:10,336:0.97:346
chr16	29141436	rs1646128	G	A	1444.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:57,66:0.54:123
chr16	29142059	rs1642020	G	C	798.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:11,34:0.76:45
chr16	29142189	rs1642021	A	T	283.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=1.569;MLEAC=1;MLEAF=0.500;MQ=53.27;MQRankSum=-4.078;QD=11.82;ReadPosRankSum=-1.306;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:11,13:0.54:24
chr16	29142204	rs1642022	A	G	166.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:13,9:0.41:22
chr16	29332380	rs257878	T	C	3558.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr16	29376400	.	CTG	C	343.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.059;ClippingRankSum=0.000;DP=151;ExcessHet=3.0103;FS=2.123;MLEAC=1;MLEAF=0.500;MQ=56.32;MQRankSum=-4.724;QD=2.58;ReadPosRankSum=-1.386;SOR=0.394;set=HC	GT:AD:AF:DP	0/1:101,32:0.24:133
chr16	29644794	rs11150561	A	G	1197.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:142,67:0.32:209
chr16	29645078	rs12597368	C	A	1317.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:111,67:0.38:178
chr16	29645104	rs35388990	CA	C	1314.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.862;ClippingRankSum=0.000;DB;DP=322;ExcessHet=3.0103;FS=1.057;MLEAC=1;MLEAF=0.500;MQ=59.74;MQRankSum=-2.438;QD=4.30;ReadPosRankSum=1.494;SOR=0.604;set=HC	GT:AD:AF:DP	0/1:177,129:0.42:306
chr16	29647700	rs200123374	C	T	179.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.542;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=45.31;MQRankSum=-1.726;QD=5.14;ReadPosRankSum=1.415;SOR=0.382;set=HC	GT:AD:AF:DP	0/1:25,10:0.29:35
chr16	29705854	rs9936468	C	T	851.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr16	29708350	rs9932770	A	G	1360.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr16	29790669	rs235634	T	A	9870.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.29;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,228:1.00:228
chr16	29790678	rs183527	T	G	9492.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr16	29790709	rs12933548	C	T	1186.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:87,57:0.40:144
chr16	29790767	rs235635	A	G	3262.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr16	29790864	rs235636	G	A	3895.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr16	29791561	rs235637	T	G	9983.77	.	AC=2;AF=1.00;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	1/1:0,366:1.00:366
chr16	29791721	rs235638	G	C	7264.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr16	29791818	rs35586094	TA	T	1124.73	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr16	29809634	.	TACACAC	T,TAC	619.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=38.73;SOR=0.941;set=HC	GT:AD:AF:DP	1/2:0,5,11:0.31,0.69:16
chr16	29809673	rs202102958	ATTTC	A	473.73	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:36,15:0.29:51
chr16	29811319	rs235648	C	T	5841.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr16	29814234	rs2450399	G	A	5871.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr16	29817998	rs111993640	C	T	3401.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr16	29821744	rs2516825	G	A	8801.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:0,319:1.00:319
chr16	29821983	.	C	CT	116.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.132;ClippingRankSum=0.000;DP=130;ExcessHet=3.0103;FS=2.096;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.26;ReadPosRankSum=0.068;SOR=1.081;set=HC	GT:AD:AF:DP	0/1:71,22:0.24:93
chr16	29822841	rs11150572	A	C	1633.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr16	29822957	rs72798131	C	T	4568.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:95,201:0.68:296
chr16	29823202	rs12923293	A	G	3115.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr16	29825126	rs11150573	T	C	10688.77	.	AC=2;AF=1.00;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	1/1:0,378:1.00:378
chr16	29828710	rs8058824	C	G	548.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.712;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.63;ReadPosRankSum=-1.072;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:115,36:0.24:151
chr16	29830829	rs11864180	T	C	290.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:37,16:0.30:53
chr16	29842891	rs34127220	C	T	3961.77	.	AC=1;AF=0.500;AN=2;DB;DP=580;set=Intersection	GT:AD:AF:DP	0/1:362,215:0.37:577
chr16	29848417	rs13331733	A	G	78.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.079;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=1.927;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.54;ReadPosRankSum=-1.212;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:24,7:0.23:31
chr16	29852860	rs3815824	C	T	164.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:9,9:0.50:18
chr16	29855731	rs9939514	G	A	517.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:78,29:0.27:107
chr16	29857316	rs4787480	G	A	1127.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.984;ClippingRankSum=0.000;DB;DP=272;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.30;ReadPosRankSum=1.056;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:187,75:0.29:262
chr16	29859430	rs11350750	CT	C	543.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.302;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=5.553;MLEAC=2;MLEAF=1.000;MQ=60.19;MQRankSum=0.442;QD=13.26;ReadPosRankSum=-1.385;SOR=0.099;set=HC	GT:AD:AF:DP	1/1:4,37:0.90:41
chr16	29872361	rs3815822	G	A	866.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:74,45:0.38:119
chr16	29906546	rs4787484	C	T	622.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:63,33:0.34:96
chr16	29907027	rs71389435	C	T	973.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:86,51:0.37:137
chr16	29907298	rs34549819	G	GT	477.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.551;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=2.320;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.564;QD=5.25;ReadPosRankSum=0.309;SOR=0.405;set=HC	GT:AD:AF:DP	0/1:64,27:0.30:91
chr16	29908433	rs11649499	C	G	1197.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr16	29910431	.	GTT	G	184.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.494;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;FS=4.867;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.72;ReadPosRankSum=1.143;SOR=1.930;set=HC	GT:AD:AF:DP	0/1:7,12:0.63:19
chr16	29912802	rs140411458	G	GGGT	7992.73	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:94,196:0.68:290
chr16	29918034	rs1129700	T	C	300.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.995;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.978;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.86;ReadPosRankSum=0.218;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:58,20:0.26:78
chr16	29923510	rs4548895	G	A	259.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:45,17:0.27:62
chr16	29934754	rs12596042	T	A	397.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.052;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=2.055;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.28;ReadPosRankSum=3.072;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:63,30:0.32:93
chr16	29937081	rs5816505	G	GA	1359.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.003;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.858;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=1.801;QD=11.43;ReadPosRankSum=1.207;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:73,46:0.39:119
chr16	29979247	.	C	CA	32.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.248;ClippingRankSum=0.000;DP=114;ExcessHet=3.0103;FS=5.711;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=0.000;QD=0.32;ReadPosRankSum=1.012;SOR=0.257;set=HC	GT:AD:AF:DP	0/1:85,18:0.17:103
chr16	29982961	rs9932702	C	T	176.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.154;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=1.090;MLEAC=1;MLEAF=0.500;MQ=59.23;MQRankSum=0.087;QD=2.68;ReadPosRankSum=1.652;SOR=0.445;set=HC	GT:AD:AF:DP	0/1:48,18:0.27:66
chr16	29993108	rs11642046	C	G	2804.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.351;ClippingRankSum=0.000;DB;DP=486;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.84;ReadPosRankSum=0.598;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:324,156:0.33:480
chr16	29994736	rs3814884	T	A	3733.77	.	AC=1;AF=0.500;AN=2;DB;DP=543;set=Intersection	GT:AD:AF:DP	0/1:350,184:0.34:534
chr16	29994922	rs3814883	C	T	11939.77	.	AC=1;AF=0.500;AN=2;DB;DP=2057;set=Intersection	GT:AD:AF:DP	0/1:1329,688:0.34:2017
chr16	29998200	rs4077410	A	G	1257.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:102,63:0.38:165
chr16	30000901	rs3814881	G	A	701.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.077;ClippingRankSum=0.000;DB;DP=200;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.54;ReadPosRankSum=0.373;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:151,47:0.24:198
chr16	30016022	rs12928610	C	T	826.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:88,46:0.34:134
chr16	30017895	rs3814880	T	C	3055.77	.	AC=1;AF=0.500;AN=2;DB;DP=498;set=Intersection	GT:AD:AF:DP	0/1:316,170:0.35:486
chr16	30018500	rs3935873	C	T	3136.77	.	AC=1;AF=0.500;AN=2;DB;DP=647;set=Intersection	GT:AD:AF:DP	0/1:442,192:0.30:634
chr16	30097630	rs2289292	C	T	900.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.638;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=1.024;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.77;ReadPosRankSum=0.170;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:21,40:0.66:61
chr16	30119525	rs8061772	C	A	634.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:16,26:0.62:42
chr16	30128064	.	T	C	3116.77	.	AC=1;AF=0.500;AN=2;DP=192;set=Intersection	GT:AD:AF:DP	0/1:56,129:0.70:185
chr16	30134679	rs61764202	C	T	1267.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:23,52:0.69:75
chr16	30198151	rs1132812	A	G	2876.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:48,127:0.73:175
chr16	30366039	rs35480350	G	A	2247.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:123,104:0.46:227
chr16	30376486	rs8049108	T	C	2908.77	.	AC=1;AF=0.500;AN=2;DB;DP=444;set=Intersection	GT:AD:AF:DP	0/1:287,154:0.35:441
chr16	30376959	rs11646130	T	C	2182.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:192,104:0.35:296
chr16	30380486	rs4238961	T	C	762.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:23,30:0.57:53
chr16	30381303	rs12930787	C	G	303.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:29,16:0.36:45
chr16	30386262	rs8046445	C	T	2823.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:69,129:0.65:198
chr16	30390314	rs12447833	T	C	2545.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:45,106:0.70:151
chr16	30393660	rs4787643	G	A	8745.77	.	AC=1;AF=0.500;AN=2;DB;DP=556;set=Intersection	GT:AD:AF:DP	0/1:173,376:0.68:549
chr16	30393771	rs4788409	G	A	2495.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:38,95:0.71:133
chr16	30409241	rs34843513	A	G	6512.77	.	AC=1;AF=0.500;AN=2;DB;DP=489;set=Intersection	GT:AD:AF:DP	0/1:192,295:0.61:487
chr16	30409699	rs9936065	C	T	11760.77	.	AC=1;AF=0.500;AN=2;DB;DP=827;set=Intersection	GT:AD:AF:DP	0/1:294,525:0.64:819
chr16	30410445	rs4788413	C	T	2103.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:60,92:0.61:152
chr16	30424888	rs11314620	GT	G	730.73	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:22,44:0.67:66
chr16	30485393	rs11574938	G	C	4086.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:102,177:0.63:279
chr16	30492666	.	TAA	T	187.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.170;ClippingRankSum=0.000;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=1.471;QD=9.88;ReadPosRankSum=-1.302;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:8,11:0.58:19
chr16	30493000	rs11574941	G	A	1442.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:25,56:0.69:81
chr16	30495412	rs2285459	T	C	3941.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:53,163:0.75:216
chr16	30495657	rs7197010	T	C	725.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:18,33:0.65:51
chr16	30505512	rs1978079	CA	TG	17590.77	.	AC=1;AF=0.500;AN=2;DB;DP=747;JOINED;set=Intersection	GT:AD:AF:DP	0/1:301,443:0.60:744
chr16	30528272	rs7196298	C	A	1441.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:158,83:0.34:241
chr16	30532727	.	C	CA	57.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.205;ClippingRankSum=0.000;DP=61;ExcessHet=3.0103;FS=2.995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.05;ReadPosRankSum=0.032;SOR=1.301;set=HC	GT:AD:AF:DP	0/1:43,12:0.22:55
chr16	30536672	rs3751847	A	G	3945.77	.	AC=1;AF=0.500;AN=2;DB;DP=591;set=Intersection	GT:AD:AF:DP	0/1:377,205:0.35:582
chr16	30536918	rs10871453	C	G	2287.77	.	AC=1;AF=0.500;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	0/1:214,125:0.37:339
chr16	30665449	.	C	CA	122.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.642;ClippingRankSum=0.000;DP=84;ExcessHet=3.0103;FS=4.105;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.57;ReadPosRankSum=1.833;SOR=0.311;set=HC	GT:AD:AF:DP	0/1:59,19:0.24:78
chr16	30670851	.	AGCGGCC	A	322.75	.	AC=2;AF=1.00;AN=2;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.34;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr16	30724070	rs4889500	G	T	7565.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr16	30724221	rs4889501	C	T	1873.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.97;SOR=1.716;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr16	30732406	rs1470129	C	G	4656.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr16	30734963	rs4889502	C	A	16911.77	.	AC=2;AF=1.00;AN=2;DB;DP=619;set=Intersection	GT:AD:AF:DP	1/1:0,609:1.00:609
chr16	30760358	.	G	C	758.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.805;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.88;MQRankSum=-0.264;QD=34.49;ReadPosRankSum=-0.491;SOR=2.494;set=HC	GT:AD:AF:DP	0/1:1,21:0.95:22
chr16	30760361	.	G	C	758.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.446;ClippingRankSum=0.000;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.82;MQRankSum=-0.279;QD=37.94;ReadPosRankSum=-0.364;SOR=3.160;set=HC	GT:AD:AF:DP	0/1:1,19:0.95:20
chr16	30760364	rs368728198	G	C	730.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.077;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.82;MQRankSum=-0.279;QD=36.54;ReadPosRankSum=-0.987;SOR=3.160;set=HC	GT:AD:AF:DP	0/1:1,19:0.95:20
chr16	30760367	rs370871117	G	C	645.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.558;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=5.254;MLEAC=1;MLEAF=0.500;MQ=56.92;MQRankSum=1.876;QD=33.99;ReadPosRankSum=1.398;SOR=3.383;set=HC	GT:AD:AF:DP	0/1:3,16:0.84:19
chr16	30760370	rs375313391	G	C	523.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.245;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=13.256;MLEAC=1;MLEAF=0.500;MQ=56.69;MQRankSum=0.720;QD=14.96;ReadPosRankSum=2.899;SOR=3.228;set=HC	GT:AD:AF:DP	0/1:19,16:0.46:35
chr16	30762640	rs4889504	C	T	6660.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr16	30766247	rs9941201	G	A	5586.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr16	30768492	rs71820772	GCTCTGGC	G	2353.73	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr16	30770267	rs7188077	C	G	2254.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr16	30770762	rs117306997	G	A	1599.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:175,85:0.33:260
chr16	30772040	rs4889505	A	G	2709.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr16	30773822	rs1550477	T	C	2597.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr16	30779716	rs7195142	A	G	5595.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr16	30780828	rs4889506	A	G	5784.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr16	30832463	rs6565205	A	C	13181.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr16	30832475	rs6565206	T	C	13981.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:0,327:1.00:327
chr16	30832701	rs8045550	A	C	13327.77	.	AC=2;AF=1.00;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	1/1:0,468:1.00:468
chr16	30833246	rs9319587	C	T	10162.77	.	AC=1;AF=0.500;AN=2;DB;DP=722;set=Intersection	GT:AD:AF:DP	0/1:261,457:0.64:718
chr16	30833272	rs8046609	A	G	23610.77	.	AC=2;AF=1.00;AN=2;DB;DP=893;set=Intersection	GT:AD:AF:DP	1/1:0,888:1.00:888
chr16	30833321	rs8046001	C	T	4508.77	.	AC=1;AF=0.500;AN=2;DB;DP=778;set=Intersection	GT:AD:AF:DP	0/1:516,257:0.33:773
chr16	30833425	rs4889510	G	C	5412.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr16	30886643	rs897984	T	C	4026.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:86,174:0.67:260
chr16	30905359	rs111620019	C	T	165.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,8:0.67:12
chr16	30938811	rs12930545	A	G	1775.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:49,75:0.60:124
chr16	30964940	rs9926903	A	G	17398.77	.	AC=2;AF=1.00;AN=2;DB;DP=618;set=Intersection	GT:AD:AF:DP	1/1:0,612:1.00:612
chr16	30965308	rs11647243	G	A	1237.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:104,62:0.37:166
chr16	30965549	rs35717321	A	AT	82.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.141;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=5.278;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=0.000;QD=1.38;ReadPosRankSum=1.037;SOR=0.181;set=HC	GT:AD:AF:DP	0/1:46,14:0.23:60
chr16	30975312	.	C	CA	138.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.086;ClippingRankSum=0.000;DP=165;ExcessHet=3.0103;FS=0.880;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=3.333;QD=0.96;ReadPosRankSum=-1.495;SOR=0.504;set=HC	GT:AD:AF:DP	0/1:118,27:0.19:145
chr16	30976129	rs117891062	T	A	5399.77	.	AC=1;AF=0.500;AN=2;DB;DP=808;set=Intersection	GT:AD:AF:DP	0/1:502,280:0.36:782
chr16	30977799	rs11150601	G	A	772.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:10,28:0.74:38
chr16	30980902	rs897986	T	C	3377.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:67,147:0.69:214
chr16	30999142	rs9938550	A	G	6784.77	.	AC=1;AF=0.500;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	0/1:141,297:0.68:438
chr16	30999198	rs17849880	C	T	3357.77	.	AC=1;AF=0.500;AN=2;DB;DP=575;set=Intersection	GT:AD:AF:DP	0/1:379,192:0.34:571
chr16	30999462	rs2305880	T	C	4019.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:64,169:0.73:233
chr16	31004812	rs12445568	T	C	2778.77	.	AC=1;AF=0.500;AN=2;DB;DP=466;set=Intersection	GT:AD:AF:DP	0/1:300,161:0.35:461
chr16	31004926	rs7194921	C	T	2347.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr16	31012781	rs12920772	G	A	734.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.639;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=5.446;MLEAC=1;MLEAF=0.500;MQ=58.98;MQRankSum=0.167;QD=9.93;ReadPosRankSum=-0.545;SOR=1.727;set=HC	GT:AD:AF:DP	0/1:28,46:0.62:74
chr16	31012813	rs61239537	G	T	485.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.559;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=5.814;MLEAC=1;MLEAF=0.500;MQ=59.26;MQRankSum=-1.331;QD=4.76;ReadPosRankSum=-0.141;SOR=0.224;set=HC	GT:AD:AF:DP	0/1:70,32:0.31:102
chr16	31044683	rs58726213	A	G	2396.77	.	AC=1;AF=0.500;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	0/1:287,133:0.32:420
chr16	31044897	rs12445650	G	A	987.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:57,44:0.44:101
chr16	31049155	rs55979739	A	G	286.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:38,18:0.32:56
chr16	31050023	rs732173	C	A	537.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.204;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=3.177;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.82;ReadPosRankSum=-0.975;SOR=1.473;set=HC	GT:AD:AF:DP	0/1:43,18:0.30:61
chr16	31050033	rs732172	C	T	474.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.092;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=3.831;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.31;ReadPosRankSum=-0.025;SOR=1.688;set=HC	GT:AD:AF:DP	0/1:37,14:0.27:51
chr16	31075175	rs2303223	G	A	3285.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:102,147:0.59:249
chr16	31075708	rs2032917	C	G	15768.77	.	AC=2;AF=1.00;AN=2;DB;DP=554;MQ=60.02;set=Intersection	GT:AD:AF:DP	1/1:0,550:1.00:550
chr16	31088347	rs749671	G	A	5956.77	.	AC=1;AF=0.500;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	0/1:117,249:0.68:366
chr16	31088625	rs749670	A	G	7440.77	.	AC=1;AF=0.500;AN=2;DB;DP=473;set=Intersection	GT:AD:AF:DP	0/1:144,320:0.69:464
chr16	31090407	rs35713203	G	C	1117.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:112,56:0.33:168
chr16	31091209	rs3751855	T	C	922.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:111,51:0.31:162
chr16	31092075	rs7196726	G	A	1192.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:143,64:0.31:207
chr16	31095171	rs11865038	C	T	506.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:84,35:0.29:119
chr16	31095204	rs11864806	G	C	668.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:69,36:0.34:105
chr16	31095251	rs11864839	G	C	394.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:68,27:0.28:95
chr16	31096164	rs7199949	G	C	961.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:83,45:0.35:128
chr16	31097574	rs4889535	G	C	1089.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr16	31104192	rs144197331	C	CA	393.73	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:12,22:0.65:34
chr16	31104509	rs8050894	C	G	197.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:7,10:0.59:17
chr16	31104878	rs9934438	G	A	1560.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:25,64:0.72:89
chr16	31105554	rs2884737	A	C	14412.77	.	AC=1;AF=0.500;AN=2;DB;DP=1064;set=Intersection	GT:AD:AF:DP	0/1:401,655:0.62:1056
chr16	31121793	rs14235	G	A	3776.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:81,164:0.67:245
chr16	31122229	rs1549296	C	T	999.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr16	31131614	rs4527034	A	G	1625.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:177,92:0.34:269
chr16	31138445	rs72785553	G	A	3397.77	.	AC=1;AF=0.500;AN=2;DB;DP=587;set=Intersection	GT:AD:AF:DP	0/1:383,189:0.33:572
chr16	31141826	rs1549295	A	G	7433.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:3,277:0.99:280
chr16	31141880	rs1549294	A	G	8104.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr16	31141993	rs1549293	C	T	4425.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:107,189:0.64:296
chr16	31142271	rs17855606	A	G	350.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:24,18:0.43:42
chr16	31142381	rs2855479	A	G	2423.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr16	31143993	rs45619735	C	T	2761.77	.	AC=1;AF=0.500;AN=2;DB;DP=468;set=Intersection	GT:AD:AF:DP	0/1:314,150:0.32:464
chr16	31151521	rs8047469	A	G	947.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.68;SOR=5.353;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr16	31152697	rs150305650	T	TAAACAAAC	1811.73	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:23,43:0.65:66
chr16	31152717	rs889547	T	C	3229.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.12;QD=35.89;SOR=1.434;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr16	31153105	rs1549300	A	G	10481.77	.	AC=2;AF=1.00;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	1/1:0,382:1.00:382
chr16	31153780	rs889546	G	A	1079.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr16	31154146	rs1549299	G	A	1907.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:193,105:0.35:298
chr16	31154345	rs79912852	G	A	4711.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:49,125:0.72:174
chr16	31154358	rs78924645	G	A	4585.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:45,120:0.73:165
chr16	31191482	rs929867	A	G	10880.77	.	AC=2;AF=1.00;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	1/1:0,403:1.00:403
chr16	31193942	rs741810	C	A	4197.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:105,191:0.65:296
chr16	31195279	rs1052352	C	T	1804.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:215,101:0.32:316
chr16	31195759	rs370126678	CT	C	289.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.405;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=1.373;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.33;ReadPosRankSum=0.115;SOR=1.015;set=HC	GT:AD:AF:DP	0/1:52,35:0.40:87
chr16	31196141	rs71771375	GTCTTTTTACTT	G	955.73	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:5,24:0.83:29
chr16	31196224	.	G	GT	144.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.347;ClippingRankSum=0.000;DP=92;ExcessHet=3.0103;FS=3.545;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.61;ReadPosRankSum=0.107;SOR=0.340;set=HC	GT:AD:AF:DP	0/1:70,20:0.22:90
chr16	31200415	rs72550862	C	T	4209.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:69,187:0.73:256
chr16	31202698	.	A	AT	194.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.176;ClippingRankSum=0.000;DP=123;ExcessHet=3.0103;FS=2.101;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.66;ReadPosRankSum=0.409;SOR=0.966;set=HC	GT:AD:AF:DP	0/1:83,34:0.29:117
chr16	31230463	rs7186832	C	T	628.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:114,38:0.25:152
chr16	31271545	rs11865830	G	A	122.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:18,7:0.28:25
chr16	31273129	rs3764327	T	C	1934.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.781;ClippingRankSum=0.000;DB;DP=348;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.67;ReadPosRankSum=-0.439;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:231,110:0.32:341
chr16	31284618	rs201225943	T	TA	544.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.753;ClippingRankSum=0.000;DB;DP=211;ExcessHet=3.0103;FS=0.648;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.585;QD=2.81;ReadPosRankSum=-0.317;SOR=0.797;set=HC	GT:AD:AF:DP	0/1:134,60:0.31:194
chr16	31336719	rs1143682	G	A	4502.77	.	AC=1;AF=0.500;AN=2;DB;DP=629;set=Intersection	GT:AD:AF:DP	0/1:385,239:0.38:624
chr16	31338114	rs186766591	C	T	3576.77	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:148,176:0.54:324
chr16	31339625	rs28372932	G	A	436.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:53,21:0.28:74
chr16	31340368	rs55742763	G	A	209.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:19,11:0.37:30
chr16	31342608	rs7188189	T	C	573.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:47,31:0.40:78
chr16	31342788	rs111881239	C	CTTG	196.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=16.39;ReadPosRankSum=-0.952;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:6,6:0.50:12
chr16	31343181	rs142861575	C	CGTGTGTGCGA	474.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.648;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=2.675;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.55;ReadPosRankSum=1.840;SOR=1.828;set=HC	GT:AD:AF:DP	0/1:30,15:0.33:45
chr16	31371193	rs4264407	C	G	1719.77	.	AC=1;AF=0.500;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	0/1:246,100:0.29:346
chr16	31374535	rs2230429	C	G	2193.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:169,115:0.40:284
chr16	31380596	rs12930249	C	T	61.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:14,5:0.26:19
chr16	31384422	rs146920512	AAAGAAG	A	548.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.323;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=4.048;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.15;ReadPosRankSum=0.611;SOR=0.928;set=HC	GT:AD:AF:DP	0/1:43,17:0.28:60
chr16	31384554	rs2070896	T	C	608.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:88,37:0.30:125
chr16	31392189	rs11150620	G	C	628.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:55,30:0.35:85
chr16	31404467	rs8050328	T	G	646.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:74,35:0.32:109
chr16	31404571	rs8050500	T	C	1913.77	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:214,108:0.34:322
chr16	31405463	rs112895789	A	G	504.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.490;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=1.450;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.41;ReadPosRankSum=3.990;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:30,30:0.50:60
chr16	31422429	rs12444660	T	C	165.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:22,10:0.31:32
chr16	31435074	rs112423560	A	C	1101.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:75,46:0.38:121
chr16	31435366	rs116943658	GA	AG	2229.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;JOINED;set=Intersection	GT:AD:AF:DP	0/1:90,61:0.40:151
chr16	31439243	.	G	GC	163.87	.	AC=2;AF=1.00;AN=2;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.77;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr16	31470540	rs3813002	T	C	181.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:44,12:0.21:56
chr16	31476458	rs11150624	C	T	2008.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:179,103:0.37:282
chr16	31483622	rs11646911	C	T	3428.77	.	AC=1;AF=0.500;AN=2;DB;DP=690;set=Intersection	GT:AD:AF:DP	0/1:449,212:0.32:661
chr16	31488916	rs10596	C	G	2118.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:172,104:0.38:276
chr16	31503751	rs4536493	A	G	390.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:57,23:0.29:80
chr16	31519048	rs11861164	A	G	1134.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:79,53:0.40:132
chr16	31539386	rs8050390	G	A	246.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.919;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=2.288;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.97;ReadPosRankSum=0.832;SOR=1.041;set=HC	GT:AD:AF:DP	0/1:66,17:0.20:83
chr16	31540030	rs10843	T	C	816.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:13,35:0.73:48
chr16	31574802	rs116973944	T	C	204.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:18,11:0.38:29
chr16	31574933	rs115422951	C	T	980.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:40,48:0.55:88
chr16	31575186	rs7192364	C	T	2680.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr16	31575310	rs149703472	C	T	1269.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:31,56:0.64:87
chr16	31580272	rs4889673	C	T	976.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:94,53:0.36:147
chr16	31580447	rs190551738	C	T	1312.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.676;ClippingRankSum=0.000;DB;DP=259;ExcessHet=3.0103;FS=1.038;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.15;ReadPosRankSum=-0.078;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:175,80:0.31:255
chr16	31580530	rs4889548	A	C	1100.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:149,63:0.30:212
chr16	31613625	rs34368131	GT	G	3839.73	.	AC=1;AF=0.500;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	0/1:271,131:0.33:402
chr16	31633856	rs34640385	G	A	486.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:14,19:0.58:33
chr16	31634148	rs35224985	A	G	974.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:25,38:0.60:63
chr16	31724836	rs2884713	T	C	3417.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr16	31734197	rs34186495	G	GA	1893.73	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:3,85:0.97:88
chr16	31745039	rs11859426	C	G	1198.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:44,50:0.53:94
chr16	31765220	rs11861974	G	A	2803.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.035;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.07;ReadPosRankSum=-3.425;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:108,78:0.42:186
chr16	31765227	rs17839502	T	C	2685.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.231;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.09;ReadPosRankSum=-2.975;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:105,73:0.41:178
chr16	31770696	rs34487972	G	GA	704.73	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:68,43:0.39:111
chr16	31770723	rs12921028	T	A	887.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:85,49:0.37:134
chr16	31804933	rs8056595	G	A	1179.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:35,46:0.57:81
chr16	31926619	rs3850114	G	A	4455.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.37;SOR=0.705;set=HC	GT:AD:AF:DP	1/1:0,169:1.00:169
chr16	31987859	rs370699866	C	T	463.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.233;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=16.113;MLEAC=1;MLEAF=0.500;MQ=41.06;MQRankSum=1.687;QD=6.10;ReadPosRankSum=-1.327;SOR=2.771;set=HC	GT:AD:AF:DP	0/1:53,23:0.30:76
chr16	31987931	rs489120	G	A	143.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.086;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=20.801;MLEAC=1;MLEAF=0.500;MQ=42.63;MQRankSum=-1.457;QD=3.06;ReadPosRankSum=-0.425;SOR=4.417;set=HC	GT:AD:AF:DP	0/1:38,9:0.19:47
chr16	32486756	rs28495417	A	G	247.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:26,12:0.32:38
chr16	32487933	rs28612238	G	A	339.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:19,18:0.49:37
chr16	32889182	.	C	T	1278.77	.	AC=1;AF=0.500;AN=2;DP=103;set=Intersection	GT:AD:AF:DP	0/1:45,54:0.55:99
chr16	32890081	.	C	T	69.84	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282;ClippingRankSum=-0.000;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=40.32;MQRankSum=-0.842;QD=13.97;ReadPosRankSum=1.282;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:1,4:0.80:5
chr16	32890720	.	C	T	725.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.477;ClippingRankSum=0.000;DP=60;ExcessHet=3.0103;FS=18.811;MLEAC=1;MLEAF=0.500;MQ=55.78;MQRankSum=2.028;QD=12.30;ReadPosRankSum=2.526;SOR=4.774;set=HC	GT:AD:AF:DP	0/1:21,38:0.64:59
chr16	32891522	rs138173595	G	C	224.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.843;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.51;MQRankSum=-2.543;QD=7.25;ReadPosRankSum=1.734;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:17,14:0.45:31
chr16	32891573	rs147501614	C	T	150.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.000;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=3.090;MLEAC=1;MLEAF=0.500;MQ=46.65;MQRankSum=-1.326;QD=13.71;ReadPosRankSum=-1.248;SOR=2.584;set=HC	GT:AD:AF:DP	0/1:4,7:0.64:11
chr16	32893876	rs375167306	T	C	1510.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.168;ClippingRankSum=0.000;DB;DP=283;ExcessHet=3.0103;FS=13.872;MLEAC=1;MLEAF=0.500;MQ=49.21;MQRankSum=-3.683;QD=5.36;ReadPosRankSum=1.215;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:185,97:0.34:282
chr16	32893880	rs149083075	G	A	2725.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.019;ClippingRankSum=0.000;DB;DP=316;ExcessHet=3.0103;FS=6.025;MLEAC=1;MLEAF=0.500;MQ=49.68;MQRankSum=1.121;QD=8.65;ReadPosRankSum=-1.541;SOR=0.999;set=HC	GT:AD:AF:DP	0/1:179,136:0.43:315
chr16	32896488	rs372917285	G	A	256.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.229;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=45.02;MQRankSum=-1.375;QD=9.17;ReadPosRankSum=-0.631;SOR=0.460;set=HC	GT:AD:AF:DP	0/1:16,12:0.43:28
chr16	32896606	rs139370574	GC	AT	1161.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;JOINED;set=Intersection	GT:AD:AF:DP	0/1:209,83:0.28:292
chr16	32896672	.	G	C	904.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.627;ClippingRankSum=0.000;DP=158;ExcessHet=3.0103;FS=2.202;MLEAC=1;MLEAF=0.500;MQ=47.60;MQRankSum=-7.699;QD=5.95;ReadPosRankSum=-0.406;SOR=0.525;set=HC	GT:AD:AF:DP	0/1:99,53:0.35:152
chr16	32896688	.	G	A	682.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.801;ClippingRankSum=0.000;DP=114;ExcessHet=3.0103;FS=4.013;MLEAC=1;MLEAF=0.500;MQ=47.50;MQRankSum=-6.443;QD=6.15;ReadPosRankSum=-1.045;SOR=0.365;set=HC	GT:AD:AF:DP	0/1:73,38:0.34:111
chr16	32896742	.	G	A	139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.872;ClippingRankSum=-0.000;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.24;MQRankSum=-1.990;QD=10.75;ReadPosRankSum=-0.414;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:7,6:0.46:13
chr16	32936832	.	A	G	3872.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.266;ClippingRankSum=0.000;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=50.05;MQRankSum=-1.850;QD=39.12;ReadPosRankSum=-1.902;SOR=0.820;set=HC	GT:AD:AF:DP	0/1:6,93:0.94:99
chr16	32936837	.	G	T	3974.56	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.554;ClippingRankSum=0.000;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=49.96;MQRankSum=-1.551;QD=37.50;ReadPosRankSum=-1.641;SOR=0.841;set=HC	GT:AD:AF:DP	0/1:6,100:0.94:106
chr16	32945457	rs28593326	G	A	449.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:13,13:0.50:26
chr16	32945481	rs28463965	G	A	499.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:13,15:0.54:28
chr16	32957041	rs62046846	C	T	3120.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.699;ClippingRankSum=0.000;DB;DP=190;ExcessHet=3.0103;FS=1.131;MLEAC=1;MLEAF=0.500;MQ=46.92;MQRankSum=-9.680;QD=16.43;ReadPosRankSum=-2.919;SOR=0.591;set=HC	GT:AD:AF:DP	0/1:105,85:0.45:190
chr16	32957043	rs62046847	T	C	3120.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.149;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=1.139;MLEAC=1;MLEAF=0.500;MQ=46.99;MQRankSum=-10.054;QD=16.87;ReadPosRankSum=-3.134;SOR=0.605;set=HC	GT:AD:AF:DP	0/1:102,83:0.45:185
chr16	33372666	rs4985326	C	T	4992.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.024;ClippingRankSum=0.000;DB;DP=397;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.72;MQRankSum=-18.517;QD=12.64;ReadPosRankSum=0.649;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:264,131:0.33:395
chr16	33372673	rs4985325	T	C	5268.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.366;ClippingRankSum=0.000;DB;DP=434;ExcessHet=3.0103;FS=0.568;MLEAC=1;MLEAF=0.500;MQ=57.64;MQRankSum=-18.603;QD=12.22;ReadPosRankSum=0.296;SOR=0.604;set=HC	GT:AD:AF:DP	0/1:286,145:0.34:431
chr16	33372677	rs4985324	C	T	5311.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.526;ClippingRankSum=0.000;DB;DP=446;ExcessHet=3.0103;FS=0.558;MLEAC=1;MLEAF=0.500;MQ=57.65;MQRankSum=-18.618;QD=11.99;ReadPosRankSum=0.143;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:293,150:0.34:443
chr16	33372694	rs4985323	T	C	3309.77	.	AC=1;AF=0.500;AN=2;DB;DP=534;set=Intersection	GT:AD:AF:DP	0/1:347,181:0.34:528
chr16	33379851	rs4566180	G	A	237.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.332;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=1.234;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.83;ReadPosRankSum=0.306;SOR=0.392;set=HC	GT:AD:AF:DP	0/1:68,16:0.19:84
chr16	33380000	rs4536488	G	A	2014.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.799;ClippingRankSum=0.000;DB;DP=505;ExcessHet=3.0103;FS=1.273;MLEAC=1;MLEAF=0.500;MQ=58.35;MQRankSum=-10.508;QD=4.01;ReadPosRankSum=2.674;SOR=0.828;set=HC	GT:AD:AF:DP	0/1:369,133:0.26:502
chr16	33380074	rs28591591	A	G	1882.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.091;ClippingRankSum=0.000;DB;DP=515;ExcessHet=3.0103;FS=1.296;MLEAC=1;MLEAF=0.500;MQ=57.62;MQRankSum=-12.089;QD=3.67;ReadPosRankSum=-3.147;SOR=0.625;set=HC	GT:AD:AF:DP	0/1:385,128:0.25:513
chr16	33380234	rs57545706	C	T	856.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;MQ=59.95;set=Intersection	GT:AD:AF:DP	0/1:62,40:0.39:102
chr16	33380263	rs57312786	C	G	663.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;MQ=59.92;set=Intersection	GT:AD:AF:DP	0/1:39,28:0.42:67
chr16	33390329	rs12232434	G	C	2946.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:204,145:0.42:349
chr16	33390399	rs4086208	C	T	4092.77	.	AC=1;AF=0.500;AN=2;DB;DP=644;set=Intersection	GT:AD:AF:DP	0/1:410,229:0.36:639
chr16	33391213	rs4082382	C	T	1098.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.597;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=1.958;MLEAC=1;MLEAF=0.500;MQ=55.70;MQRankSum=-0.150;QD=11.94;ReadPosRankSum=1.850;SOR=0.932;set=HC	GT:AD:AF:DP	0/1:61,31:0.34:92
chr16	33391222	rs4082381	G	A	1200.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.821;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=4.074;MLEAC=1;MLEAF=0.500;MQ=54.63;MQRankSum=-0.680;QD=11.55;ReadPosRankSum=0.669;SOR=1.129;set=HC	GT:AD:AF:DP	0/1:67,37:0.36:104
chr16	33391256	rs7193840	A	G	925.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:93,51:0.35:144
chr16	33391348	rs7188099	G	A	2170.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:186,115:0.38:301
chr16	33391395	rs7188064	G	A	2616.77	.	AC=1;AF=0.500;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	0/1:249,138:0.36:387
chr16	33391415	rs357994	A	C	6264.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.346;ClippingRankSum=0.000;DB;DP=409;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.69;MQRankSum=-3.716;QD=15.39;ReadPosRankSum=-0.651;SOR=0.649;set=HC	GT:AD:AF:DP	0/1:133,274:0.67:407
chr16	33392008	rs56739713	A	G	639.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.142;ClippingRankSum=0.000;DB;DP=267;ExcessHet=3.0103;FS=2.883;MLEAC=1;MLEAF=0.500;MQ=56.67;MQRankSum=0.680;QD=2.49;ReadPosRankSum=-0.016;SOR=0.919;set=HC	GT:AD:AF:DP	0/1:204,53:0.21:257
chr16	33392165	rs11150710	C	G	4523.77	.	AC=1;AF=0.500;AN=2;DB;DP=651;set=Intersection	GT:AD:AF:DP	0/1:389,250:0.39:639
chr16	33392215	rs11150709	G	A	2610.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:176,130:0.42:306
chr16	33392231	rs11150708	C	T	2092.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:120,101:0.46:221
chr16	33395795	rs373875949	TA	T	1326.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.196;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.08;ReadPosRankSum=0.545;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:53,35:0.40:88
chr16	33395797	.	A	AAATAATAATAATAAT	598.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.484;ClippingRankSum=0.000;DP=91;ExcessHet=3.0103;FS=9.801;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.73;ReadPosRankSum=-0.737;SOR=2.390;set=HC	GT:AD:AF:DP	0/1:72,17:0.19:89
chr16	33395802	rs368088965	AT	A	1350.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.671;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=4.341;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.11;ReadPosRankSum=0.189;SOR=1.169;set=HC	GT:AD:AF:DP	0/1:66,37:0.36:103
chr16	33395820	rs113700056	A	ACAG	1839.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.606;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=9.070;MLEAC=1;MLEAF=0.500;MQ=59.76;MQRankSum=0.740;QD=12.69;ReadPosRankSum=-0.050;SOR=1.474;set=HC	GT:AD:AF:DP	0/1:95,50:0.34:145
chr16	33395882	rs4887691	A	G	2275.77	.	AC=1;AF=0.500;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	0/1:283,129:0.31:412
chr16	33395983	rs28650990	T	C	2262.77	.	AC=1;AF=0.500;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	0/1:260,125:0.32:385
chr16	33408626	rs8059234	T	C	3616.77	.	AC=1;AF=0.500;AN=2;DB;DP=730;set=Intersection	GT:AD:AF:DP	0/1:506,216:0.30:722
chr16	33408654	rs60406485	C	A	5786.77	.	AC=1;AF=0.500;AN=2;DB;DP=686;set=Intersection	GT:AD:AF:DP	0/1:498,185:0.27:683
chr16	33408673	rs28415216	G	A	5823.77	.	AC=1;AF=0.500;AN=2;DB;DP=658;set=Intersection	GT:AD:AF:DP	0/1:473,184:0.28:657
chr16	33408733	rs8058447	GC	AT	3495.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.099;ClippingRankSum=0.000;DB;DP=418;ExcessHet=3.0103;FS=5.001;JOINED;MLEAC=1;MLEAF=0.500;MQ=57.92;MQRankSum=-9.335;QD=8.38;ReadPosRankSum=1.800;SOR=1.116;set=HC	GT:AD:AF:DP	0/1:310,107:0.26:417
chr16	33408793	rs58465568	G	A	1204.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:129,57:0.31:186
chr16	33410561	rs2632816	T	C	1135.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:108,52:0.33:160
chr16	33410688	rs56055507	C	T	1427.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.146;ClippingRankSum=0.000;DB;DP=823;ExcessHet=3.0103;FS=13.080;MLEAC=1;MLEAF=0.500;MQ=54.05;MQRankSum=-8.083;QD=1.76;ReadPosRankSum=-3.687;SOR=1.898;set=HC	GT:AD:AF:DP	0/1:677,134:0.17:811
chr16	33410777	rs74905055	G	T	1199.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.394;ClippingRankSum=0.000;DB;DP=971;ExcessHet=3.0103;FS=1.513;MLEAC=1;MLEAF=0.500;MQ=57.29;MQRankSum=-22.105;QD=1.25;ReadPosRankSum=6.607;SOR=0.539;set=HC	GT:AD:AF:DP	0/1:797,166:0.17:963
chr16	33424634	rs60026982	T	C	3677.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.255;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.12;MQRankSum=-2.721;QD=27.24;ReadPosRankSum=0.298;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:49,86:0.64:135
chr16	33424637	rs62033013	AA	GG	3837.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.426;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.19;MQRankSum=-2.683;QD=25.93;ReadPosRankSum=0.194;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:53,95:0.64:148
chr16	33424691	rs2632824	T	C	5799.77	.	AC=1;AF=0.500;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	0/1:109,241:0.69:350
chr16	33424787	rs2632823	C	T	15959.77	.	AC=1;AF=0.500;AN=2;DB;DP=1021;set=Intersection	GT:AD:AF:DP	0/1:308,704:0.70:1012
chr16	33424917	rs1906318	A	C	15249.77	.	AC=1;AF=0.500;AN=2;DB;DP=1069;set=Intersection	GT:AD:AF:DP	0/1:408,654:0.62:1062
chr16	33424950	rs2927971	C	T	13487.77	.	AC=1;AF=0.500;AN=2;DB;DP=979;set=Intersection	GT:AD:AF:DP	0/1:391,583:0.60:974
chr16	33500743	rs3888934	T	C	1109.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:70,44:0.39:114
chr16	33500893	rs4079166	C	T	6891.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.620;ClippingRankSum=0.000;DB;DP=885;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.49;MQRankSum=-18.483;QD=7.80;ReadPosRankSum=0.191;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:665,218:0.25:883
chr16	33500900	rs4079165	C	T	6946.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.374;ClippingRankSum=0.000;DB;DP=883;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.58;MQRankSum=-18.234;QD=7.89;ReadPosRankSum=2.435;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:671,210:0.24:881
chr16	33500908	rs3888935	C	A	7037.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.565;ClippingRankSum=0.000;DB;DP=868;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.62;MQRankSum=-17.175;QD=8.13;ReadPosRankSum=2.874;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:652,214:0.25:866
chr16	33500915	rs4079164	T	A	7222.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.402;ClippingRankSum=0.000;DB;DP=860;ExcessHet=3.0103;FS=0.598;MLEAC=1;MLEAF=0.500;MQ=58.63;MQRankSum=-16.507;QD=8.42;ReadPosRankSum=2.432;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:635,223:0.26:858
chr16	33500973	rs58427145	CAG	C	6762.73	.	AC=1;AF=0.500;AN=2;DB;DP=599;set=Intersection	GT:AD:AF:DP	0/1:385,196:0.34:581
chr16	33530607	rs79470439	G	A	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.680;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=3.542;MLEAC=1;MLEAF=0.500;MQ=57.16;MQRankSum=-4.017;QD=2.93;ReadPosRankSum=0.911;SOR=0.098;set=HC	GT:AD:AF:DP	0/1:15,3:0.17:18
chr16	33530615	rs141353651	ACCTT	A	43.73	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:15,3:0.17:18
chr16	33530621	rs373785170	G	C	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.729;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=3.542;MLEAC=1;MLEAF=0.500;MQ=57.16;MQRankSum=-4.017;QD=2.93;ReadPosRankSum=0.604;SOR=0.098;set=HC	GT:AD:AF:DP	0/1:15,3:0.17:18
chr16	33530626	rs377553032	T	A	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.862;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=3.542;MLEAC=1;MLEAF=0.500;MQ=57.16;MQRankSum=-4.017;QD=2.93;ReadPosRankSum=0.951;SOR=0.098;set=HC	GT:AD:AF:DP	0/1:15,3:0.17:18
chr16	33530639	rs75805537	A	T	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.013;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=3.109;MLEAC=1;MLEAF=0.500;MQ=56.99;MQRankSum=-3.887;QD=1.94;ReadPosRankSum=1.308;SOR=0.132;set=HC	GT:AD:AF:DP	0/1:18,3:0.14:21
chr16	33530639	.	AAT	TAC	249	.	AC=1;AF=0.500;AN=2;BRF=0.4;FR=0.5000;HP=5;HapScore=2;MGOF=8;MMLQ=28;MQ=47.13;NF=3;NR=1;PP=249;QD=75.6169687156;SC=GTACACAAAAAATAACATTAT;SbPval=0.61;Source=Platypus;TC=24;TCF=19;TCR=5;TR=4;WE=33530649;WS=33530597;set=Platypus	GT:AD:AF:DP	1/0:20,4:0.17:24
chr16	33530641	rs78357706	T	C	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.946;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=3.278;MLEAC=1;MLEAF=0.500;MQ=57.13;MQRankSum=-3.983;QD=1.85;ReadPosRankSum=1.294;SOR=0.117;set=HC	GT:AD:AF:DP	0/1:19,3:0.14:22
chr16	33530740	rs200449516	TA	T	298.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.965;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.79;MQRankSum=-0.902;QD=6.22;ReadPosRankSum=0.789;SOR=0.591;set=HC	GT:AD:AF:DP	0/1:23,25:0.52:48
chr16	33534128	rs4247491	G	C	2871.77	.	AC=1;AF=0.500;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:191,128:0.40:319
chr16	33534161	rs4247492	T	C	2586.77	.	AC=1;AF=0.500;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	0/1:305,129:0.30:434
chr16	33534194	rs112954068	C	CA	6614.73	.	AC=1;AF=0.500;AN=2;DB;DP=567;set=Intersection	GT:AD:AF:DP	0/1:375,181:0.33:556
chr16	33534198	rs146867572	C	A	6710.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.296;ClippingRankSum=0.000;DB;DP=587;ExcessHet=3.0103;FS=7.624;MLEAC=1;MLEAF=0.500;MQ=54.66;MQRankSum=-23.299;QD=11.51;ReadPosRankSum=-4.780;SOR=1.130;set=HC	GT:AD:AF:DP	0/1:392,191:0.33:583
chr16	33534205	rs75274563	T	C	6894.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.810;ClippingRankSum=0.000;DB;DP=590;ExcessHet=3.0103;FS=7.745;MLEAC=1;MLEAF=0.500;MQ=54.83;MQRankSum=-23.281;QD=11.79;ReadPosRankSum=-3.480;SOR=1.205;set=HC	GT:AD:AF:DP	0/1:397,188:0.32:585
chr16	33534209	rs111304289	T	A	7181.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.516;ClippingRankSum=0.000;DB;DP=594;ExcessHet=3.0103;FS=7.561;MLEAC=1;MLEAF=0.500;MQ=54.73;MQRankSum=-23.334;QD=12.19;ReadPosRankSum=-3.364;SOR=1.182;set=HC	GT:AD:AF:DP	0/1:396,193:0.33:589
chr16	33534212	rs74015084	C	T	7148.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.681;ClippingRankSum=0.000;DB;DP=601;ExcessHet=3.0103;FS=6.430;MLEAC=1;MLEAF=0.500;MQ=54.62;MQRankSum=-23.177;QD=11.99;ReadPosRankSum=-3.849;SOR=1.187;set=HC	GT:AD:AF:DP	0/1:393,203:0.34:596
chr16	33534254	rs79370116	C	A	674.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.600;ClippingRankSum=0.000;DB;DP=519;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.46;MQRankSum=-12.703;QD=1.31;ReadPosRankSum=3.797;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:436,78:0.15:514
chr16	33534278	rs10445205	A	G	8448.77	.	AC=1;AF=0.500;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	0/1:138,321:0.70:459
chr16	33534325	rs375310866	CT	C	3546.73	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:128,104:0.45:232
chr16	33534330	rs28594967	G	A	6023.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:67,172:0.72:239
chr16	33534344	rs78083012	G	T	3359.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.302;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=0.609;MLEAC=1;MLEAF=0.500;MQ=53.23;MQRankSum=-11.632;QD=18.16;ReadPosRankSum=0.562;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:100,85:0.46:185
chr16	33534346	rs375719784	G	T	2438.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.867;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=0.768;MLEAC=1;MLEAF=0.500;MQ=53.31;MQRankSum=-11.149;QD=14.10;ReadPosRankSum=0.632;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:94,79:0.46:173
chr16	33534352	rs78884180	G	C	2936.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.665;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=3.325;MLEAC=1;MLEAF=0.500;MQ=53.61;MQRankSum=-10.447;QD=18.24;ReadPosRankSum=0.487;SOR=1.043;set=HC	GT:AD:AF:DP	0/1:87,74:0.46:161
chr16	33534354	rs74594913	C	T	2942.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.660;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=3.285;MLEAC=1;MLEAF=0.500;MQ=53.36;MQRankSum=-10.345;QD=18.86;ReadPosRankSum=0.226;SOR=1.008;set=HC	GT:AD:AF:DP	0/1:83,73:0.47:156
chr16	33534369	rs74800708	C	CAA	1911.73	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:64,49:0.43:113
chr16	33539512	rs78972024	C	T	4060.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:125,137:0.52:262
chr16	33539535	rs55950724	T	C	824.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.742;ClippingRankSum=0.000;DB;DP=356;ExcessHet=3.0103;FS=15.844;MLEAC=1;MLEAF=0.500;MQ=48.86;MQRankSum=-4.973;QD=2.32;ReadPosRankSum=1.470;SOR=1.518;set=HC	GT:AD:AF:DP	0/1:289,66:0.19:355
chr16	33539541	rs80334711	A	C	5729.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.360;ClippingRankSum=0.000;DB;DP=391;ExcessHet=3.0103;FS=30.100;MLEAC=1;MLEAF=0.500;MQ=48.92;MQRankSum=-8.595;QD=14.69;ReadPosRankSum=0.691;SOR=0.224;set=HC	GT:AD:AF:DP	0/1:197,193:0.49:390
chr16	33539588	rs79792636	T	G	3328.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.633;ClippingRankSum=0.000;DB;DP=530;ExcessHet=3.0103;FS=22.108;MLEAC=1;MLEAF=0.500;MQ=51.53;MQRankSum=-12.707;QD=6.29;ReadPosRankSum=6.335;SOR=1.119;set=HC	GT:AD:AF:DP	0/1:359,170:0.32:529
chr16	33539634	rs76750868	C	T	1313.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.902;ClippingRankSum=0.000;DB;DP=541;ExcessHet=3.0103;FS=24.241;MLEAC=1;MLEAF=0.500;MQ=53.92;MQRankSum=-14.241;QD=2.49;ReadPosRankSum=-5.105;SOR=2.380;set=HC	GT:AD:AF:DP	0/1:426,102:0.19:528
chr16	33539648	rs56161129	C	A	5908.77	.	AC=1;AF=0.500;AN=2;DB;DP=490;set=Intersection	GT:AD:AF:DP	0/1:259,230:0.47:489
chr16	33539747	rs56272308	G	T	1606.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:53,70:0.57:123
chr16	33629620	rs2005870	C	T	7434.77	.	AC=1;AF=0.500;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	0/1:207,193:0.48:400
chr16	33629637	rs2005869	T	G	8491.77	.	AC=1;AF=0.500;AN=2;DB;DP=536;set=Intersection	GT:AD:AF:DP	0/1:283,250:0.47:533
chr16	33629700	rs2019670	G	A	9853.77	.	AC=1;AF=0.500;AN=2;DB;DP=1036;set=Intersection	GT:AD:AF:DP	0/1:555,473:0.46:1028
chr16	33629846	rs28494899	T	A	10875.77	.	AC=1;AF=0.500;AN=2;DB;DP=1163;set=Intersection	GT:AD:AF:DP	0/1:648,503:0.44:1151
chr16	33629950	rs4077614	G	T	9634.77	.	AC=1;AF=0.500;AN=2;DB;DP=1218;set=Intersection	GT:AD:AF:DP	0/1:737,477:0.39:1214
chr16	33629973	rs2002923	G	A	10494.77	.	AC=1;AF=0.500;AN=2;DB;DP=1266;set=Intersection	GT:AD:AF:DP	0/1:754,507:0.40:1261
chr16	33630022	rs2075113	A	T	10186.77	.	AC=1;AF=0.500;AN=2;DB;DP=1180;set=Intersection	GT:AD:AF:DP	0/1:678,496:0.42:1174
chr16	33630336	rs492688	A	G	3983.77	.	AC=1;AF=0.500;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	0/1:219,195:0.47:414
chr16	33630533	rs2110374	A	C	5002.77	.	AC=1;AF=0.500;AN=2;DB;DP=510;set=Intersection	GT:AD:AF:DP	0/1:240,246:0.51:486
chr16	33784056	rs199697492	A	G	637.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.27;QD=33.57;SOR=5.994;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr16	33784423	rs190376515	T	C	648.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.365;ClippingRankSum=0.000;DB;DP=396;ExcessHet=3.0103;FS=3.922;MLEAC=1;MLEAF=0.500;MQ=54.79;MQRankSum=-12.151;QD=1.67;ReadPosRankSum=-4.217;SOR=0.978;set=HC	GT:AD:AF:DP	0/1:323,66:0.17:389
chr16	33784595	.	C	CGGGGT	606.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.648;ClippingRankSum=0.000;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=45.43;MQRankSum=0.073;QD=11.90;ReadPosRankSum=1.437;SOR=0.171;set=HC	GT:AD:AF:DP	0/1:36,15:0.29:51
chr16	33784613	.	G	GC	732.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.666;ClippingRankSum=0.000;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=48.85;MQRankSum=-2.505;QD=10.18;ReadPosRankSum=-0.229;SOR=0.874;set=HC	GT:AD:AF:DP	0/1:46,26:0.36:72
chr16	33961019	.	G	A	83.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.347;ClippingRankSum=0.000;DP=68;ExcessHet=3.0103;FS=19.796;MLEAC=1;MLEAF=0.500;MQ=59.42;MQRankSum=-2.574;QD=1.33;ReadPosRankSum=-0.344;SOR=0.831;set=HC	GT:AD:AF:DP	0/1:55,8:0.13:63
chr16	33961030	rs77469183	T	A	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.014;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=13.982;MLEAC=1;MLEAF=0.500;MQ=59.44;MQRankSum=-3.406;QD=0.49;ReadPosRankSum=-1.384;SOR=0.596;set=HC	GT:AD:AF:DP	0/1:60,5:0.08:65
chr16	33961317	rs75989665	G	A	1052.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.017;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=42.919;MLEAC=1;MLEAF=0.500;MQ=59.05;MQRankSum=-5.513;QD=6.71;ReadPosRankSum=1.941;SOR=2.681;set=HC	GT:AD:AF:DP	0/1:121,36:0.23:157
chr16	33961323	.	G	A	273.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.596;ClippingRankSum=0.000;DP=157;ExcessHet=3.0103;FS=17.159;MLEAC=1;MLEAF=0.500;MQ=58.79;MQRankSum=-4.593;QD=1.78;ReadPosRankSum=0.795;SOR=2.185;set=HC	GT:AD:AF:DP	0/1:133,21:0.14:154
chr16	33961327	rs79375500	G	T	1260.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.443;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=48.038;MLEAC=1;MLEAF=0.500;MQ=58.35;MQRankSum=-6.740;QD=8.46;ReadPosRankSum=0.613;SOR=2.983;set=HC	GT:AD:AF:DP	0/1:108,41:0.28:149
chr16	33961350	.	G	T	101.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.072;ClippingRankSum=0.000;DP=166;ExcessHet=3.0103;FS=4.275;MLEAC=1;MLEAF=0.500;MQ=57.69;MQRankSum=-5.294;QD=0.62;ReadPosRankSum=0.130;SOR=1.481;set=HC	GT:AD:AF:DP	0/1:150,13:0.08:163
chr16	33961358	.	G	A	116.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.012;ClippingRankSum=0.000;DP=161;ExcessHet=3.0103;FS=5.847;MLEAC=1;MLEAF=0.500;MQ=57.53;MQRankSum=-5.657;QD=0.73;ReadPosRankSum=-0.128;SOR=1.483;set=HC	GT:AD:AF:DP	0/1:145,14:0.09:159
chr16	33961363	.	C	T	247.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.249;ClippingRankSum=0.000;DP=159;ExcessHet=3.0103;FS=9.396;MLEAC=1;MLEAF=0.500;MQ=57.39;MQRankSum=-0.072;QD=1.58;ReadPosRankSum=1.167;SOR=1.917;set=HC	GT:AD:AF:DP	0/1:139,18:0.11:157
chr16	33961370	rs72797450	A	C	2310.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:99,66:0.40:165
chr16	33961371	.	G	A	137.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.000;ClippingRankSum=0.000;DP=170;ExcessHet=3.0103;FS=2.375;MLEAC=1;MLEAF=0.500;MQ=57.43;MQRankSum=-5.975;QD=0.82;ReadPosRankSum=-0.428;SOR=1.045;set=HC	GT:AD:AF:DP	0/1:153,15:0.09:168
chr16	33961378	.	C	T	143.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.238;ClippingRankSum=0.000;DP=177;ExcessHet=3.0103;FS=2.342;MLEAC=1;MLEAF=0.500;MQ=57.50;MQRankSum=-6.354;QD=0.82;ReadPosRankSum=-0.701;SOR=1.060;set=HC	GT:AD:AF:DP	0/1:160,16:0.09:176
chr16	33961386	rs76705741	G	A	804.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.363;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=30.719;MLEAC=1;MLEAF=0.500;MQ=57.56;MQRankSum=-7.574;QD=4.91;ReadPosRankSum=1.383;SOR=3.545;set=HC	GT:AD:AF:DP	0/1:134,30:0.18:164
chr16	33961390	.	GACCCGCTCCGCTGCGAGCCGGCTCTCC	G	1282.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=4.686;ClippingRankSum=0.000;DP=230;ExcessHet=3.0103;FS=26.159;MLEAC=1;MLEAF=0.500;MQ=57.53;MQRankSum=-8.581;QD=5.58;ReadPosRankSum=0.926;SOR=2.456;set=HC	GT:AD:AF:DP	0/1:185,45:0.20:230
chr16	33961400	rs113037697	G	T	411.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=4.196;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=3.275;MLEAC=1;MLEAF=0.500;MQ=57.41;MQRankSum=-2.094;QD=2.20;ReadPosRankSum=-0.002;SOR=1.089;set=HC	GT:AD:AF:DP	0/1:164,23:0.12:187
chr16	33961418	rs113700972	A	G	451.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.952;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=0.816;MLEAC=1;MLEAF=0.500;MQ=57.21;MQRankSum=-3.034;QD=2.12;ReadPosRankSum=-0.675;SOR=0.822;set=HC	GT:AD:AF:DP	0/1:185,28:0.13:213
chr16	33961453	rs74808338	A	G	670.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.107;ClippingRankSum=0.000;DB;DP=247;ExcessHet=3.0103;FS=13.998;MLEAC=1;MLEAF=0.500;MQ=57.80;MQRankSum=-13.128;QD=3.02;ReadPosRankSum=3.158;SOR=1.956;set=HC	GT:AD:AF:DP	0/1:190,32:0.14:222
chr16	33961465	rs74932417	G	A	487.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.657;ClippingRankSum=0.000;DB;DP=265;ExcessHet=3.0103;FS=14.164;MLEAC=1;MLEAF=0.500;MQ=57.89;MQRankSum=-11.464;QD=1.85;ReadPosRankSum=2.119;SOR=1.997;set=HC	GT:AD:AF:DP	0/1:234,29:0.11:263
chr16	33961467	rs74834425	G	A	271.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.196;ClippingRankSum=0.000;DB;DP=269;ExcessHet=3.0103;FS=2.916;MLEAC=1;MLEAF=0.500;MQ=57.92;MQRankSum=-6.797;QD=1.02;ReadPosRankSum=1.097;SOR=0.434;set=HC	GT:AD:AF:DP	0/1:243,24:0.09:267
chr16	33961470	.	ACG	A	394.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=4.176;ClippingRankSum=0.000;DP=288;ExcessHet=3.0103;FS=16.128;MLEAC=1;MLEAF=0.500;MQ=57.93;MQRankSum=-12.001;QD=1.39;ReadPosRankSum=1.561;SOR=2.070;set=HC	GT:AD:AF:DP	0/1:255,28:0.10:283
chr16	33961471	rs137972467	C	A	232.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.376;ClippingRankSum=0.000;DB;DP=280;ExcessHet=3.0103;FS=2.856;MLEAC=1;MLEAF=0.500;MQ=57.88;MQRankSum=-7.246;QD=0.84;ReadPosRankSum=0.614;SOR=0.424;set=HC	GT:AD:AF:DP	0/1:251,25:0.09:276
chr16	33961474	rs78784184	G	C	223.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.806;ClippingRankSum=0.000;DB;DP=288;ExcessHet=3.0103;FS=1.915;MLEAC=1;MLEAF=0.500;MQ=57.88;MQRankSum=-8.333;QD=0.79;ReadPosRankSum=2.027;SOR=0.468;set=HC	GT:AD:AF:DP	0/1:261,21:0.07:282
chr16	33961475	.	G	GCA	352.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=5.372;ClippingRankSum=0.000;DP=290;ExcessHet=3.0103;FS=16.201;MLEAC=1;MLEAF=0.500;MQ=57.83;MQRankSum=-11.829;QD=1.24;ReadPosRankSum=1.075;SOR=2.088;set=HC	GT:AD:AF:DP	0/1:256,28:0.10:284
chr16	33961481	rs366164	A	C	1106.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=6.920;ClippingRankSum=0.000;DB;DP=290;ExcessHet=3.0103;FS=9.227;MLEAC=1;MLEAF=0.500;MQ=57.81;MQRankSum=-15.616;QD=3.94;ReadPosRankSum=1.183;SOR=1.431;set=HC	GT:AD:AF:DP	0/1:235,46:0.16:281
chr16	33961482	rs78161808	T	C	1204.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=6.254;ClippingRankSum=0.000;DB;DP=291;ExcessHet=3.0103;FS=10.173;MLEAC=1;MLEAF=0.500;MQ=57.81;MQRankSum=-15.818;QD=4.27;ReadPosRankSum=0.883;SOR=1.435;set=HC	GT:AD:AF:DP	0/1:236,46:0.16:282
chr16	33961483	rs77018326	G	T	278.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.315;ClippingRankSum=0.000;DB;DP=293;ExcessHet=3.0103;FS=19.519;MLEAC=1;MLEAF=0.500;MQ=57.83;MQRankSum=-12.263;QD=0.98;ReadPosRankSum=-1.051;SOR=2.461;set=HC	GT:AD:AF:DP	0/1:257,27:0.10:284
chr16	33961499	rs75192280	CA	TG	1105.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;JOINED;set=Intersection	GT:AD:AF:DP	0/1:274,46:0.14:320
chr16	33961506	.	A	T	206.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.273;ClippingRankSum=0.000;DP=351;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.93;MQRankSum=-13.990;QD=0.61;ReadPosRankSum=-1.691;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:307,30:0.09:337
chr16	33961539	rs72797452	A	C	1927.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.302;ClippingRankSum=0.000;DB;DP=484;ExcessHet=3.0103;FS=8.287;MLEAC=1;MLEAF=0.500;MQ=57.89;MQRankSum=-21.503;QD=3.99;ReadPosRankSum=-3.293;SOR=1.502;set=HC	GT:AD:AF:DP	0/1:416,67:0.14:483
chr16	33961541	rs79025441	T	G	2046.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.470;ClippingRankSum=0.000;DB;DP=497;ExcessHet=3.0103;FS=11.462;MLEAC=1;MLEAF=0.500;MQ=57.88;MQRankSum=-21.469;QD=4.13;ReadPosRankSum=-4.562;SOR=1.692;set=HC	GT:AD:AF:DP	0/1:420,76:0.15:496
chr16	33961544	rs79909802	C	T	2237.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.953;ClippingRankSum=0.000;DB;DP=507;ExcessHet=3.0103;FS=11.462;MLEAC=1;MLEAF=0.500;MQ=57.96;MQRankSum=-21.705;QD=4.42;ReadPosRankSum=-4.408;SOR=1.674;set=HC	GT:AD:AF:DP	0/1:427,79:0.16:506
chr16	33961552	rs76049930	G	A	3085.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.961;ClippingRankSum=0.000;DB;DP=567;ExcessHet=3.0103;FS=12.025;MLEAC=1;MLEAF=0.500;MQ=58.01;MQRankSum=-21.221;QD=5.47;ReadPosRankSum=-5.256;SOR=1.697;set=HC	GT:AD:AF:DP	0/1:462,102:0.18:564
chr16	33961555	rs77111738	C	A	4199.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.415;ClippingRankSum=0.000;DB;DP=582;ExcessHet=3.0103;FS=12.068;MLEAC=1;MLEAF=0.500;MQ=58.07;MQRankSum=-20.771;QD=7.25;ReadPosRankSum=-4.801;SOR=1.797;set=HC	GT:AD:AF:DP	0/1:472,107:0.18:579
chr16	33961556	rs75931509	A	G	4262.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.813;ClippingRankSum=0.000;DB;DP=595;ExcessHet=3.0103;FS=13.762;MLEAC=1;MLEAF=0.500;MQ=58.05;MQRankSum=-20.762;QD=7.20;ReadPosRankSum=-5.225;SOR=1.738;set=HC	GT:AD:AF:DP	0/1:478,114:0.19:592
chr16	33961563	rs112604583	C	G	4918.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.192;ClippingRankSum=0.000;DB;DP=669;ExcessHet=3.0103;FS=3.037;MLEAC=1;MLEAF=0.500;MQ=58.09;MQRankSum=-20.909;QD=7.40;ReadPosRankSum=-5.685;SOR=1.012;set=HC	GT:AD:AF:DP	0/1:515,150:0.23:665
chr16	33961580	rs80277405	C	A	6546.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.679;ClippingRankSum=0.000;DB;DP=848;ExcessHet=3.0103;FS=1.960;MLEAC=1;MLEAF=0.500;MQ=57.61;MQRankSum=-21.776;QD=7.78;ReadPosRankSum=-4.381;SOR=0.870;set=HC	GT:AD:AF:DP	0/1:601,241:0.29:842
chr16	33961607	rs77756910	G	T	11813.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.805;ClippingRankSum=0.000;DB;DP=964;ExcessHet=3.0103;FS=1.169;MLEAC=1;MLEAF=0.500;MQ=56.78;MQRankSum=-21.440;QD=12.28;ReadPosRankSum=0.071;SOR=0.767;set=HC	GT:AD:AF:DP	0/1:634,328:0.34:962
chr16	33961628	rs72797455	A	G	13418.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.914;ClippingRankSum=0.000;DB;DP=979;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.43;MQRankSum=-23.481;QD=14.12;ReadPosRankSum=-0.467;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:551,399:0.42:950
chr16	33961658	rs78363140	A	G	11027.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.619;ClippingRankSum=0.000;DB;DP=946;ExcessHet=3.0103;FS=0.555;MLEAC=1;MLEAF=0.500;MQ=56.22;MQRankSum=-21.643;QD=11.71;ReadPosRankSum=3.858;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:630,312:0.33:942
chr16	33961658	.	AG	GA	2944	.	AC=1;AF=0.500;AN=2;BRF=0.56;FR=0.5000;HP=4;HapScore=1;MGOF=134;MMLQ=24;MQ=49.87;NF=163;NR=181;PP=2944;QD=20;SC=GGTGGGTGCCAGGGGCCGTCC;SbPval=0.57;Source=Platypus;TC=852;TCF=407;TCR=445;TR=344;WE=33961680;WS=33961633;set=Platypus	GT:AD:AF:DP	0/1:508,344:0.40:852
chr16	33961659	rs72797456	G	A	17309.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.421;ClippingRankSum=0.000;DB;DP=947;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.22;MQRankSum=-23.398;QD=18.36;ReadPosRankSum=3.150;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:494,449:0.48:943
chr16	33961671	.	C	A	9702.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.699;ClippingRankSum=0.000;DP=879;ExcessHet=3.0103;FS=0.571;MLEAC=1;MLEAF=0.500;MQ=56.35;MQRankSum=-18.851;QD=11.09;ReadPosRankSum=2.318;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:611,264:0.30:875
chr16	33961672	rs72797457	T	G	15493.77	.	AC=1;AF=0.500;AN=2;DB;DP=876;set=Intersection	GT:AD:AF:DP	0/1:455,387:0.46:842
chr16	33961689	rs75866886	G	A	14537.77	.	AC=1;AF=0.500;AN=2;DB;DP=764;set=Intersection	GT:AD:AF:DP	0/1:400,360:0.47:760
chr16	33961690	rs75534331	C	G	8432.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.873;ClippingRankSum=0.000;DB;DP=763;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.12;MQRankSum=-15.812;QD=11.11;ReadPosRankSum=-3.487;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:532,227:0.30:759
chr16	33961702	rs79080425	C	A	13656.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.414;ClippingRankSum=0.000;DB;DP=681;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.75;MQRankSum=-19.043;QD=20.11;ReadPosRankSum=1.319;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:339,340:0.50:679
chr16	33961705	rs72797458	A	G	13243.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.815;ClippingRankSum=0.000;DB;DP=646;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.66;MQRankSum=-19.125;QD=20.56;ReadPosRankSum=0.375;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:317,327:0.51:644
chr16	33961714	rs74614742	G	A	3660.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.456;ClippingRankSum=0.000;DB;DP=581;ExcessHet=3.0103;FS=1.413;MLEAC=1;MLEAF=0.500;MQ=55.50;MQRankSum=-3.190;QD=6.33;ReadPosRankSum=7.037;SOR=0.561;set=HC	GT:AD:AF:DP	0/1:455,123:0.21:578
chr16	33961725	rs76585222	G	A	4101.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.601;ClippingRankSum=0.000;DB;DP=487;ExcessHet=3.0103;FS=3.015;MLEAC=1;MLEAF=0.500;MQ=55.12;MQRankSum=-4.601;QD=8.47;ReadPosRankSum=2.923;SOR=0.465;set=HC	GT:AD:AF:DP	0/1:355,129:0.27:484
chr16	33961748	.	C	T	556.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.101;ClippingRankSum=0.000;DP=361;ExcessHet=3.0103;FS=27.225;MLEAC=1;MLEAF=0.500;MQ=54.93;MQRankSum=-9.969;QD=1.55;ReadPosRankSum=-3.214;SOR=2.697;set=HC	GT:AD:AF:DP	0/1:317,42:0.12:359
chr16	33961751	rs79409546	C	A	2821.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-6.106;ClippingRankSum=0.000;DB;DP=333;ExcessHet=3.0103;FS=3.723;MLEAC=1;MLEAF=0.500;MQ=54.74;MQRankSum=-5.966;QD=8.52;ReadPosRankSum=-3.231;SOR=0.490;set=HC	GT:AD:AF:DP	0/1:233,98:0.30:331
chr16	33961752	rs77324679	T	C	6956.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-3.385;ClippingRankSum=0.000;DB;DP=331;ExcessHet=3.0103;FS=2.031;MLEAC=1;MLEAF=0.500;MQ=54.71;MQRankSum=-15.328;QD=21.15;ReadPosRankSum=-2.755;SOR=0.828;set=HC	GT:AD:AF:DP	0/1:157,172:0.52:329
chr16	33961752	.	TT	CG	2944	.	AC=1;AF=0.500;AN=2;BRF=0.5;FR=0.5000;HP=2;HapScore=1;MGOF=161;MMLQ=24;MQ=47.32;NF=50;NR=159;PP=2944;QD=20;SC=GTGGCCCGGCTTTGCCTGAGG;SbPval=0.6;Source=Platypus;TC=342;TCF=86;TCR=256;TR=209;WE=33961761;WS=33961736;set=Platypus	GT:AD:AF:DP	1/0:133,209:0.61:342
chr16	33961753	.	T	G	6927.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-3.511;ClippingRankSum=0.000;DP=326;ExcessHet=3.0103;FS=1.473;MLEAC=1;MLEAF=0.500;MQ=54.73;MQRankSum=-15.448;QD=21.38;ReadPosRankSum=-2.378;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:156,168:0.52:324
chr16	33961759	.	G	C	348.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.004;ClippingRankSum=0.000;DP=307;ExcessHet=3.0103;FS=25.981;MLEAC=1;MLEAF=0.500;MQ=54.38;MQRankSum=-8.108;QD=1.14;ReadPosRankSum=-2.100;SOR=3.507;set=HC	GT:AD:AF:DP	0/1:278,27:0.09:305
chr16	33961768	rs115947274	T	G	4902.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.711;ClippingRankSum=0.000;DB;DP=278;ExcessHet=3.0103;FS=1.084;MLEAC=1;MLEAF=0.500;MQ=54.05;MQRankSum=-14.262;QD=19.38;ReadPosRankSum=-0.279;SOR=0.601;set=HC	GT:AD:AF:DP	0/1:131,122:0.48:253
chr16	33961772	rs77705528	G	A	1447.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.376;ClippingRankSum=0.000;DB;DP=264;ExcessHet=3.0103;FS=6.839;MLEAC=1;MLEAF=0.500;MQ=53.91;MQRankSum=-4.455;QD=5.53;ReadPosRankSum=3.878;SOR=0.337;set=HC	GT:AD:AF:DP	0/1:211,51:0.19:262
chr16	33961779	rs74332681	C	A	1725.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.092;ClippingRankSum=0.000;DB;DP=245;ExcessHet=3.0103;FS=10.908;MLEAC=1;MLEAF=0.500;MQ=53.77;MQRankSum=-3.417;QD=7.07;ReadPosRankSum=3.288;SOR=0.250;set=HC	GT:AD:AF:DP	0/1:187,57:0.23:244
chr16	33961786	rs200619814	C	A	423.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.681;ClippingRankSum=0.000;DB;DP=224;ExcessHet=3.0103;FS=8.543;MLEAC=1;MLEAF=0.500;MQ=53.34;MQRankSum=-3.490;QD=1.89;ReadPosRankSum=3.107;SOR=0.261;set=HC	GT:AD:AF:DP	0/1:188,36:0.16:224
chr16	33961787	rs201829623	G	C	32.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.450;ClippingRankSum=0.000;DB;DP=225;ExcessHet=3.0103;FS=20.573;MLEAC=1;MLEAF=0.500;MQ=53.39;MQRankSum=-6.522;QD=0.15;ReadPosRankSum=-2.592;SOR=3.964;set=HC	GT:AD:AF:DP	0/1:206,19:0.08:225
chr16	33961794	rs78260690	C	T	72.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.623;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=5.987;MLEAC=1;MLEAF=0.500;MQ=53.12;MQRankSum=-4.502;QD=0.35;ReadPosRankSum=-0.038;SOR=1.628;set=HC	GT:AD:AF:DP	0/1:188,18:0.09:206
chr16	33961810	rs78551646	T	C	1421.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.940;ClippingRankSum=0.000;DB;DP=190;ExcessHet=3.0103;FS=19.715;MLEAC=1;MLEAF=0.500;MQ=53.09;MQRankSum=-10.282;QD=7.48;ReadPosRankSum=2.108;SOR=2.307;set=HC	GT:AD:AF:DP	0/1:146,44:0.23:190
chr16	33961812	rs201198779	C	G	833.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.011;ClippingRankSum=0.000;DB;DP=190;ExcessHet=3.0103;FS=7.307;MLEAC=1;MLEAF=0.500;MQ=53.09;MQRankSum=-8.191;QD=4.39;ReadPosRankSum=1.859;SOR=1.514;set=HC	GT:AD:AF:DP	0/1:158,32:0.17:190
chr16	33961848	.	G	A	630.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.739;ClippingRankSum=0.000;DP=159;ExcessHet=3.0103;FS=0.877;MLEAC=1;MLEAF=0.500;MQ=53.82;MQRankSum=-7.005;QD=3.97;ReadPosRankSum=-0.513;SOR=0.822;set=HC	GT:AD:AF:DP	0/1:133,26:0.16:159
chr16	33961854	.	G	A	107.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.623;ClippingRankSum=0.000;DP=156;ExcessHet=3.0103;FS=19.613;MLEAC=1;MLEAF=0.500;MQ=53.98;MQRankSum=0.584;QD=0.69;ReadPosRankSum=-2.911;SOR=1.724;set=HC	GT:AD:AF:DP	0/1:148,8:0.05:156
chr16	33961855	rs72797460	T	G	3865.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:59,98:0.62:157
chr16	33961870	.	A	C	410.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.349;ClippingRankSum=0.000;DP=148;ExcessHet=3.0103;FS=23.703;MLEAC=1;MLEAF=0.500;MQ=55.13;MQRankSum=1.282;QD=2.78;ReadPosRankSum=-3.392;SOR=1.444;set=HC	GT:AD:AF:DP	0/1:129,19:0.13:148
chr16	33961872	.	C	T	431.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.076;ClippingRankSum=0.000;DP=147;ExcessHet=3.0103;FS=22.136;MLEAC=1;MLEAF=0.500;MQ=55.25;MQRankSum=1.516;QD=2.94;ReadPosRankSum=-3.688;SOR=1.323;set=HC	GT:AD:AF:DP	0/1:126,21:0.14:147
chr16	33961873	rs75103985	G	A	1708.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.567;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=8.502;MLEAC=1;MLEAF=0.500;MQ=55.24;MQRankSum=-2.201;QD=11.87;ReadPosRankSum=2.941;SOR=1.417;set=HC	GT:AD:AF:DP	0/1:97,47:0.33:144
chr16	33961877	rs75193282	C	T	1701.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.030;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=9.606;MLEAC=1;MLEAF=0.500;MQ=55.32;MQRankSum=-2.860;QD=11.20;ReadPosRankSum=2.096;SOR=1.445;set=HC	GT:AD:AF:DP	0/1:103,49:0.32:152
chr16	33961878	rs76097628	A	G	2234.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.476;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=15.760;MLEAC=1;MLEAF=0.500;MQ=55.45;MQRankSum=-5.979;QD=14.61;ReadPosRankSum=1.303;SOR=1.756;set=HC	GT:AD:AF:DP	0/1:93,60:0.39:153
chr16	33961880	rs79165944	C	T	2222.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.102;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=15.529;MLEAC=1;MLEAF=0.500;MQ=55.40;MQRankSum=-5.717;QD=14.07;ReadPosRankSum=1.455;SOR=1.738;set=HC	GT:AD:AF:DP	0/1:99,59:0.37:158
chr16	33961881	rs72797461	A	G	4070.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.559;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=2.134;MLEAC=1;MLEAF=0.500;MQ=55.63;MQRankSum=-6.245;QD=26.09;ReadPosRankSum=-2.230;SOR=0.939;set=HC	GT:AD:AF:DP	0/1:58,98:0.63:156
chr16	33961901	.	C	T	1550.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.615;ClippingRankSum=0.000;DP=159;ExcessHet=3.0103;FS=6.691;MLEAC=1;MLEAF=0.500;MQ=56.82;MQRankSum=-1.023;QD=9.75;ReadPosRankSum=0.474;SOR=0.419;set=HC	GT:AD:AF:DP	0/1:114,45:0.28:159
chr16	33961901	.	CC	TG	452	.	AC=1;AF=0.500;AN=2;BRF=0.51;FR=0.5000;HP=4;HapScore=2;MGOF=133;MMLQ=28;MQ=53.63;NF=14;NR=17;PP=452;QD=16.3054153181;SC=GTGGTGGCCCCCTCTGGGACC;SbPval=0.34;Source=Platypus;TC=115;TCF=45;TCR=70;TR=31;WE=33961910;WS=33961891;set=Platypus	GT:AD:AF:DP	0/1:84,31:0.27:115
chr16	33961902	rs72797463	C	G	3091.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.082;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=0.630;MLEAC=1;MLEAF=0.500;MQ=56.80;MQRankSum=-6.305;QD=19.57;ReadPosRankSum=-0.398;SOR=0.609;set=HC	GT:AD:AF:DP	0/1:69,89:0.56:158
chr16	33961917	.	C	A	1709.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.785;ClippingRankSum=0.000;DP=152;ExcessHet=3.0103;FS=4.224;MLEAC=1;MLEAF=0.500;MQ=57.00;MQRankSum=-1.875;QD=11.25;ReadPosRankSum=2.502;SOR=0.409;set=HC	GT:AD:AF:DP	0/1:104,48:0.32:152
chr16	33961918	rs74202243	G	T	1016.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.258;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=4.919;MLEAC=1;MLEAF=0.500;MQ=57.00;MQRankSum=-4.713;QD=6.73;ReadPosRankSum=-1.720;SOR=1.158;set=HC	GT:AD:AF:DP	0/1:119,32:0.21:151
chr16	33961923	.	C	T	1718.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.545;ClippingRankSum=0.000;DP=142;ExcessHet=3.0103;FS=5.545;MLEAC=1;MLEAF=0.500;MQ=57.24;MQRankSum=-1.668;QD=12.10;ReadPosRankSum=3.822;SOR=0.363;set=HC	GT:AD:AF:DP	0/1:96,46:0.32:142
chr16	33961932	.	T	G	1872.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.416;ClippingRankSum=0.000;DP=140;ExcessHet=3.0103;FS=6.692;MLEAC=1;MLEAF=0.500;MQ=57.25;MQRankSum=-2.252;QD=13.38;ReadPosRankSum=3.962;SOR=0.417;set=HC	GT:AD:AF:DP	0/1:91,49:0.35:140
chr16	33961935	.	C	T	1881.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.128;ClippingRankSum=0.000;DP=141;ExcessHet=3.0103;FS=5.300;MLEAC=1;MLEAF=0.500;MQ=57.00;MQRankSum=-2.502;QD=13.35;ReadPosRankSum=3.226;SOR=0.385;set=HC	GT:AD:AF:DP	0/1:89,52:0.37:141
chr16	33961936	.	G	T	1956.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.622;ClippingRankSum=0.000;DP=141;ExcessHet=3.0103;FS=2.375;MLEAC=1;MLEAF=0.500;MQ=57.00;MQRankSum=-4.975;QD=16.58;ReadPosRankSum=2.767;SOR=0.484;set=HC	GT:AD:AF:DP	0/1:66,52:0.44:118
chr16	33961938	rs76855422	T	C	576.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.619;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=7.577;MLEAC=1;MLEAF=0.500;MQ=56.96;MQRankSum=-4.388;QD=4.15;ReadPosRankSum=-2.631;SOR=1.491;set=HC	GT:AD:AF:DP	0/1:116,23:0.17:139
chr16	33961942	rs79267180	A	G	1887.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.512;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=5.406;MLEAC=1;MLEAF=0.500;MQ=56.96;MQRankSum=-2.539;QD=13.68;ReadPosRankSum=3.123;SOR=0.362;set=HC	GT:AD:AF:DP	0/1:86,52:0.38:138
chr16	33961944	rs79289835	G	C	2841.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.097;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=0.639;MLEAC=1;MLEAF=0.500;MQ=56.91;MQRankSum=-5.647;QD=20.90;ReadPosRankSum=1.014;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:64,72:0.53:136
chr16	33961960	rs78680157	G	A	2233.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.000;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=1.433;MLEAC=1;MLEAF=0.500;MQ=56.80;MQRankSum=-5.223;QD=18.01;ReadPosRankSum=0.258;SOR=0.532;set=HC	GT:AD:AF:DP	0/1:65,59:0.48:124
chr16	33961961	rs76830030	G	A	222.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.743;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=12.440;MLEAC=1;MLEAF=0.500;MQ=56.80;MQRankSum=-4.898;QD=1.60;ReadPosRankSum=-1.766;SOR=2.218;set=HC	GT:AD:AF:DP	0/1:124,15:0.11:139
chr16	33961968	.	C	A	49.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.121;ClippingRankSum=0.000;DP=132;ExcessHet=3.0103;FS=3.397;MLEAC=1;MLEAF=0.500;MQ=56.65;MQRankSum=-5.140;QD=0.38;ReadPosRankSum=-1.071;SOR=1.360;set=HC	GT:AD:AF:DP	0/1:122,10:0.08:132
chr16	33961983	rs112920839	C	T	1902.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.540;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=0.693;MLEAC=1;MLEAF=0.500;MQ=57.48;MQRankSum=-2.215;QD=15.99;ReadPosRankSum=0.248;SOR=0.580;set=HC	GT:AD:AF:DP	0/1:69,50:0.42:119
chr16	33961990	rs72797465	C	A	1728.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.958;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.82;MQRankSum=-4.444;QD=17.12;ReadPosRankSum=0.117;SOR=0.762;set=HC	GT:AD:AF:DP	0/1:58,43:0.43:101
chr16	33962001	rs75137392	G	A	1695.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.447;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=2.782;MLEAC=1;MLEAF=0.500;MQ=57.48;MQRankSum=-5.437;QD=18.43;ReadPosRankSum=-0.383;SOR=1.048;set=HC	GT:AD:AF:DP	0/1:53,39:0.42:92
chr16	33962009	rs72797468	T	C	1164.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.710;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=4.515;MLEAC=1;MLEAF=0.500;MQ=57.28;MQRankSum=-5.486;QD=14.74;ReadPosRankSum=-0.397;SOR=1.284;set=HC	GT:AD:AF:DP	0/1:48,31:0.39:79
chr16	33962014	.	A	G	987.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.616;ClippingRankSum=0.000;DP=78;ExcessHet=3.0103;FS=0.904;MLEAC=1;MLEAF=0.500;MQ=57.24;MQRankSum=-3.950;QD=12.66;ReadPosRankSum=-0.849;SOR=0.882;set=HC	GT:AD:AF:DP	0/1:50,28:0.36:78
chr16	33962025	.	GA	G	243.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.136;ClippingRankSum=0.000;DP=74;ExcessHet=3.0103;FS=3.952;MLEAC=1;MLEAF=0.500;MQ=57.09;MQRankSum=-5.594;QD=3.53;ReadPosRankSum=0.262;SOR=1.277;set=HC	GT:AD:AF:DP	0/1:52,17:0.25:69
chr16	33962028	.	A	AC	573.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.591;ClippingRankSum=0.000;DP=67;ExcessHet=3.0103;FS=4.064;MLEAC=1;MLEAF=0.500;MQ=57.04;MQRankSum=-6.657;QD=8.83;ReadPosRankSum=-0.306;SOR=1.360;set=HC	GT:AD:AF:DP	0/1:48,17:0.26:65
chr16	33962040	rs79907733	A	T	423.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.588;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=2.756;MLEAC=1;MLEAF=0.500;MQ=56.82;MQRankSum=-7.375;QD=7.43;ReadPosRankSum=-1.530;SOR=1.277;set=HC	GT:AD:AF:DP	0/1:43,14:0.25:57
chr16	33962044	.	G	A	378.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.982;ClippingRankSum=0.000;DP=58;ExcessHet=3.0103;FS=1.264;MLEAC=1;MLEAF=0.500;MQ=56.87;MQRankSum=-6.969;QD=6.53;ReadPosRankSum=-1.511;SOR=1.044;set=HC	GT:AD:AF:DP	0/1:45,13:0.22:58
chr16	33962051	rs79115664	G	C	348.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.332;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=4.908;MLEAC=1;MLEAF=0.500;MQ=57.06;MQRankSum=-7.121;QD=6.58;ReadPosRankSum=-2.977;SOR=1.593;set=HC	GT:AD:AF:DP	0/1:41,12:0.23:53
chr16	33962059	.	C	G	252.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.458;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=1.444;MLEAC=1;MLEAF=0.500;MQ=58.07;MQRankSum=-7.224;QD=4.68;ReadPosRankSum=-2.183;SOR=1.098;set=HC	GT:AD:AF:DP	0/1:45,9:0.17:54
chr16	33962061	.	C	G	210.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.734;ClippingRankSum=0.000;DP=55;ExcessHet=3.0103;FS=1.429;MLEAC=1;MLEAF=0.500;MQ=58.10;MQRankSum=-7.293;QD=3.83;ReadPosRankSum=-2.458;SOR=1.048;set=HC	GT:AD:AF:DP	0/1:46,9:0.16:55
chr16	33962078	rs72797471	C	T	56.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.666;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=1.715;MLEAC=1;MLEAF=0.500;MQ=58.82;MQRankSum=-5.431;QD=1.18;ReadPosRankSum=-2.497;SOR=1.199;set=HC	GT:AD:AF:DP	0/1:42,6:0.12:48
chr16	33962199	.	T	G	1024	.	AC=1;AF=0.500;AN=2;BRF=0.61;FR=0.5000;HP=3;HapScore=2;MGOF=92;MMLQ=24;MQ=52.82;NF=15;NR=2;PP=1024;QD=62.2806595616;SC=CCCAAACGTCTGGGCTGCCCC;SbPval=0.99;Source=Platypus;TC=58;TCF=37;TCR=21;TR=17;WE=33962263;WS=33962189;set=Platypus	GT:AD:AF:DP	1/0:41,17:0.29:58
chr16	33962277	.	GT	CC	1429	.	AC=1;AF=0.500;AN=2;BRF=0.63;FR=0.5000;HP=3;HapScore=2;MGOF=143;MMLQ=24;MQ=50.88;NF=26;NR=12;PP=1429;QD=39.0123124964;SC=CGGTCTGCCTGTTCGCACGTG;SbPval=0.96;Source=Platypus;TC=73;TCF=37;TCR=36;TR=38;WE=33962286;WS=33962267;set=Platypus	GT:AD:AF:DP	1/0:35,38:0.52:73
chr16	33962298	.	T	G	770	.	AC=1;AF=0.500;AN=2;BRF=0.64;FR=0.5000;HP=2;HapScore=2;MGOF=174;MMLQ=24;MQ=50.52;NF=27;NR=15;PP=770;QD=19.1612193464;SC=GGCGCGAAGGTTCGGGAGTGG;SbPval=0.92;Source=Platypus;TC=71;TCF=36;TCR=35;TR=42;WE=33962306;WS=33962288;set=Platypus	GT:AD:AF:DP	1/0:29,42:0.59:71
chr16	33962365	.	C	T	2962	.	AC=1;AF=0.500;AN=2;BRF=0.61;FR=0.5000;HP=3;HapScore=3;MGOF=277;MMLQ=24;MQ=53.81;NF=15;NR=27;PP=2962;QD=20;SC=GGTTCGCCGCCCCACCACCCC;SbPval=0.39;Source=Platypus;TC=56;TCF=18;TCR=38;TR=42;WE=33962373;WS=33962341;set=Platypus	GT:AD:AF:DP	0/1:14,42:0.75:56
chr16	33962412	rs72797477	A	C	1042.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.639;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.29;MQRankSum=-1.860;QD=32.59;ReadPosRankSum=1.521;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:6,26:0.81:32
chr16	33962416	rs75367546	G	C	793.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.170;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.29;MQRankSum=-1.972;QD=31.75;ReadPosRankSum=0.843;SOR=1.101;set=HC	GT:AD:AF:DP	0/1:6,19:0.76:25
chr16	33962425	.	G	A	332.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.730;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;FS=1.831;MLEAC=1;MLEAF=0.500;MQ=51.82;MQRankSum=-0.569;QD=9.79;ReadPosRankSum=-0.728;SOR=0.275;set=HC	GT:AD:AF:DP	0/1:23,11:0.32:34
chr16	33962433	.	G	A	344.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.638;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;FS=1.756;MLEAC=1;MLEAF=0.500;MQ=51.83;MQRankSum=-0.703;QD=10.77;ReadPosRankSum=-1.401;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:21,11:0.34:32
chr16	33962434	rs149073555	CG	C	1210.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:4,30:0.88:34
chr16	33962446	rs117915306	C	T	1177.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.154;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.01;MQRankSum=-1.784;QD=35.69;ReadPosRankSum=-2.237;SOR=1.371;set=HC	GT:AD:AF:DP	0/1:4,29:0.88:33
chr16	33962456	rs75550881	G	T	1093.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.567;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.68;MQRankSum=-1.771;QD=37.72;ReadPosRankSum=-1.525;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:4,25:0.86:29
chr16	33962470	rs74988619	C	T	883.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.481;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=49.08;MQRankSum=-2.063;QD=33.99;ReadPosRankSum=-0.337;SOR=1.528;set=HC	GT:AD:AF:DP	0/1:4,22:0.85:26
chr16	33962479	rs74016524	T	C	799.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.546;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=49.10;MQRankSum=-2.219;QD=33.32;ReadPosRankSum=0.476;SOR=1.358;set=HC	GT:AD:AF:DP	0/1:4,20:0.83:24
chr16	33965402	.	G	A	2573	.	AC=1;AF=0.500;AN=2;BRF=0.28;FR=0.5000;HP=4;HapScore=2;MGOF=139;MMLQ=28;MQ=55.52;NF=55;NR=4;PP=2573;QD=20;SC=TGTTGGGAGCGCCCTTGCCAA;SbPval=0.56;Source=Platypus;TC=118;TCF=110;TCR=8;TR=59;WE=33965416;WS=33965399;set=Platypus	GT:AD:AF:DP	1/0:59,59:0.50:118
chr16	33965407	rs140145020	T	C	561.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.583;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=10.381;MLEAC=1;MLEAF=0.500;MQ=56.65;MQRankSum=0.072;QD=9.06;ReadPosRankSum=3.551;SOR=3.107;set=HC	GT:AD:AF:DP	0/1:44,18:0.29:62
chr16	33965408	rs146483430	G	A	520.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.240;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=13.011;MLEAC=1;MLEAF=0.500;MQ=56.70;MQRankSum=0.031;QD=8.27;ReadPosRankSum=3.666;SOR=3.309;set=HC	GT:AD:AF:DP	0/1:45,18:0.29:63
chr16	33965449	rs74187619	G	C	950.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.479;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=4.013;MLEAC=1;MLEAF=0.500;MQ=56.16;MQRankSum=-11.063;QD=5.22;ReadPosRankSum=0.235;SOR=1.135;set=HC	GT:AD:AF:DP	0/1:148,34:0.19:182
chr16	33965456	rs79575365	T	C	4737.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.662;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=3.428;MLEAC=1;MLEAF=0.500;MQ=56.21;MQRankSum=-7.827;QD=22.67;ReadPosRankSum=-1.806;SOR=0.475;set=HC	GT:AD:AF:DP	0/1:96,113:0.54:209
chr16	33965459	rs112675472	C	T	1142.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.127;ClippingRankSum=0.000;DB;DP=227;ExcessHet=3.0103;FS=3.333;MLEAC=1;MLEAF=0.500;MQ=56.37;MQRankSum=-12.507;QD=5.06;ReadPosRankSum=0.840;SOR=1.002;set=HC	GT:AD:AF:DP	0/1:185,41:0.18:226
chr16	33965460	rs112558134	G	A	3263.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.434;ClippingRankSum=0.000;DB;DP=233;ExcessHet=3.0103;FS=7.132;MLEAC=1;MLEAF=0.500;MQ=56.47;MQRankSum=1.736;QD=14.07;ReadPosRankSum=-2.640;SOR=0.385;set=HC	GT:AD:AF:DP	0/1:147,85:0.37:232
chr16	33965470	.	G	A	373.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.768;ClippingRankSum=0.000;DP=297;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.86;MQRankSum=-11.483;QD=1.26;ReadPosRankSum=-2.347;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:251,45:0.15:296
chr16	33965482	rs370138825	GA	G	4518.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.080;ClippingRankSum=0.000;DB;DP=368;ExcessHet=3.0103;FS=2.476;MLEAC=1;MLEAF=0.500;MQ=57.09;MQRankSum=1.545;QD=12.31;ReadPosRankSum=-0.460;SOR=0.567;set=HC	GT:AD:AF:DP	0/1:246,121:0.33:367
chr16	33965489	.	A	T	4926.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.514;ClippingRankSum=0.000;DP=406;ExcessHet=3.0103;FS=1.227;MLEAC=1;MLEAF=0.500;MQ=56.84;MQRankSum=2.151;QD=12.16;ReadPosRankSum=-0.360;SOR=0.583;set=HC	GT:AD:AF:DP	0/1:271,134:0.33:405
chr16	33965493	.	T	C	5358.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.237;ClippingRankSum=0.000;DP=434;ExcessHet=3.0103;FS=1.229;MLEAC=1;MLEAF=0.500;MQ=56.64;MQRankSum=2.493;QD=12.38;ReadPosRankSum=0.200;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:292,141:0.33:433
chr16	33965496	.	A	T	5414.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.454;ClippingRankSum=0.000;DP=462;ExcessHet=3.0103;FS=1.956;MLEAC=1;MLEAF=0.500;MQ=56.60;MQRankSum=2.674;QD=11.75;ReadPosRankSum=-0.025;SOR=0.539;set=HC	GT:AD:AF:DP	0/1:309,152:0.33:461
chr16	33965505	rs375920374	C	T	9855.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.562;ClippingRankSum=0.000;DB;DP=534;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.40;MQRankSum=-8.266;QD=18.77;ReadPosRankSum=-0.445;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:262,263:0.50:525
chr16	33965507	rs74614199	G	C	3982.77	.	AC=1;AF=0.500;AN=2;DB;DP=550;set=Intersection	GT:AD:AF:DP	0/1:414,134:0.24:548
chr16	33965533	rs78817399	A	C	18018.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.561;ClippingRankSum=0.000;DB;DP=743;ExcessHet=3.0103;FS=0.539;MLEAC=1;MLEAF=0.500;MQ=56.86;MQRankSum=-13.845;QD=24.28;ReadPosRankSum=-0.781;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:298,444:0.60:742
chr16	33965537	.	C	T	887.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.079;ClippingRankSum=0.000;DP=762;ExcessHet=3.0103;FS=3.614;MLEAC=1;MLEAF=0.500;MQ=56.94;MQRankSum=-5.636;QD=1.17;ReadPosRankSum=-3.834;SOR=1.204;set=HC	GT:AD:AF:DP	0/1:693,67:0.09:760
chr16	33965538	rs146300192	A	G	19238.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.380;ClippingRankSum=0.000;DB;DP=770;ExcessHet=3.0103;FS=0.538;MLEAC=1;MLEAF=0.500;MQ=56.98;MQRankSum=-13.513;QD=25.08;ReadPosRankSum=-0.714;SOR=0.759;set=HC	GT:AD:AF:DP	0/1:301,466:0.61:767
chr16	33965542	.	C	T	10132.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.322;ClippingRankSum=0.000;DP=808;ExcessHet=3.0103;FS=0.555;MLEAC=1;MLEAF=0.500;MQ=57.12;MQRankSum=1.344;QD=12.59;ReadPosRankSum=0.834;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:534,271:0.34:805
chr16	33965545	.	G	A	4436.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.297;ClippingRankSum=0.000;DP=832;ExcessHet=3.0103;FS=1.456;MLEAC=1;MLEAF=0.500;MQ=57.25;MQRankSum=-16.999;QD=5.35;ReadPosRankSum=2.268;SOR=0.852;set=HC	GT:AD:AF:DP	0/1:671,158:0.19:829
chr16	33965560	rs75603223	T	A	22482.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.731;ClippingRankSum=0.000;DB;DP=896;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.53;MQRankSum=-12.296;QD=25.20;ReadPosRankSum=0.688;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:323,569:0.64:892
chr16	33965560	.	TTGCCTGTCTG	ATGCCTGTCTA,ATGCCTGTCTG	2962	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.47;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=151;MMLQ=28;MQ=54.64;NF=184,338;NR=158,275;PP=2944,2962;QD=20;SC=TCCCAGGGCTTTGCCTGTCTG;SbPval=0.47;Source=Platypus;TC=803;TCF=440;TCR=363;TR=342,613;WE=33965603;WS=33965550;set=Platypus	GT:AF:DP	0/1:0.43:803
chr16	33965563	.	C	T	829.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.055;ClippingRankSum=0.000;DP=911;ExcessHet=3.0103;FS=0.867;MLEAC=1;MLEAF=0.500;MQ=57.54;MQRankSum=-0.487;QD=0.92;ReadPosRankSum=-1.148;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:807,99:0.11:906
chr16	33965570	.	G	A	5721.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.492;ClippingRankSum=0.000;DP=931;ExcessHet=3.0103;FS=2.208;MLEAC=1;MLEAF=0.500;MQ=57.67;MQRankSum=-17.931;QD=6.19;ReadPosRankSum=2.263;SOR=0.912;set=HC	GT:AD:AF:DP	0/1:732,193:0.21:925
chr16	33965582	rs199951204	C	T	18204.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.207;ClippingRankSum=0.000;DB;DP=923;ExcessHet=3.0103;FS=0.521;MLEAC=1;MLEAF=0.500;MQ=57.87;MQRankSum=-10.396;QD=19.90;ReadPosRankSum=2.055;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:442,473:0.52:915
chr16	33965583	.	C	G	5544.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.623;ClippingRankSum=0.000;DP=922;ExcessHet=3.0103;FS=2.222;MLEAC=1;MLEAF=0.500;MQ=57.88;MQRankSum=-18.281;QD=6.07;ReadPosRankSum=2.799;SOR=0.931;set=HC	GT:AD:AF:DP	0/1:727,187:0.20:914
chr16	33965589	rs62030476	G	A	19200.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.504;ClippingRankSum=0.000;DB;DP=901;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.96;MQRankSum=-9.009;QD=21.53;ReadPosRankSum=-2.277;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:392,500:0.56:892
chr16	33965595	.	C	A	9685.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.044;ClippingRankSum=0.000;DP=1168;ExcessHet=3.0103;FS=0.608;MLEAC=1;MLEAF=0.500;MQ=56.59;MQRankSum=-15.607;QD=8.39;ReadPosRankSum=2.190;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:862,293:0.25:1155
chr16	33965618	.	C	T	13466.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.748;ClippingRankSum=0.000;DP=1004;ExcessHet=3.0103;FS=0.542;MLEAC=1;MLEAF=0.500;MQ=57.06;MQRankSum=-17.816;QD=13.59;ReadPosRankSum=-1.019;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:636,355:0.36:991
chr16	33965620	.	G	A	1811.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.458;ClippingRankSum=0.000;DP=983;ExcessHet=3.0103;FS=4.261;MLEAC=1;MLEAF=0.500;MQ=57.05;MQRankSum=-6.324;QD=1.87;ReadPosRankSum=-1.572;SOR=1.135;set=HC	GT:AD:AF:DP	0/1:861,109:0.11:970
chr16	33965624	.	G	T	1966.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.028;ClippingRankSum=0.000;DP=949;ExcessHet=3.0103;FS=3.041;MLEAC=1;MLEAF=0.500;MQ=57.05;MQRankSum=-6.480;QD=2.10;ReadPosRankSum=-1.873;SOR=1.108;set=HC	GT:AD:AF:DP	0/1:827,109:0.12:936
chr16	33965627	rs74218440	T	C	13386.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.239;ClippingRankSum=0.000;DB;DP=928;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.04;MQRankSum=-17.846;QD=16.88;ReadPosRankSum=-2.315;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:445,348:0.44:793
chr16	33965635	.	G	A	2239.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.774;ClippingRankSum=0.000;DP=864;ExcessHet=3.0103;FS=2.980;MLEAC=1;MLEAF=0.500;MQ=57.22;MQRankSum=-6.491;QD=2.63;ReadPosRankSum=-2.226;SOR=1.154;set=HC	GT:AD:AF:DP	0/1:748,104:0.12:852
chr16	33965636	.	G	A	3225.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.468;ClippingRankSum=0.000;DP=857;ExcessHet=3.0103;FS=2.640;MLEAC=1;MLEAF=0.500;MQ=57.33;MQRankSum=2.311;QD=3.82;ReadPosRankSum=2.322;SOR=0.457;set=HC	GT:AD:AF:DP	0/1:716,129:0.15:845
chr16	33965640	.	CCT	C	50.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.042;ClippingRankSum=0.000;DP=822;ExcessHet=3.0103;FS=1.836;MLEAC=1;MLEAF=0.500;MQ=57.65;MQRankSum=-5.850;QD=0.06;ReadPosRankSum=0.571;SOR=0.902;set=HC	GT:AD:AF:DP	0/1:716,92:0.11:808
chr16	33965643	.	G	T	2054.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.807;ClippingRankSum=0.000;DP=792;ExcessHet=3.0103;FS=2.920;MLEAC=1;MLEAF=0.500;MQ=57.79;MQRankSum=-7.298;QD=2.63;ReadPosRankSum=-2.652;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:680,100:0.13:780
chr16	33965644	rs72799208	A	G	15910.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.406;ClippingRankSum=0.000;DB;DP=776;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.82;MQRankSum=0.449;QD=20.96;ReadPosRankSum=0.536;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:356,403:0.53:759
chr16	33965646	.	G	A	8519.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.054;ClippingRankSum=0.000;DP=756;ExcessHet=3.0103;FS=0.552;MLEAC=1;MLEAF=0.500;MQ=58.01;MQRankSum=-9.927;QD=14.82;ReadPosRankSum=-0.708;SOR=0.611;set=HC	GT:AD:AF:DP	0/1:359,216:0.38:575
chr16	33965655	rs113687113	C	A	5752.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.972;ClippingRankSum=0.000;DB;DP=686;ExcessHet=3.0103;FS=0.599;MLEAC=1;MLEAF=0.500;MQ=58.64;MQRankSum=6.321;QD=10.22;ReadPosRankSum=1.972;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:398,165:0.29:563
chr16	33965665	rs74016532	C	T	7582.77	.	AC=1;AF=0.500;AN=2;DB;DP=594;set=Intersection	GT:AD:AF:DP	0/1:385,199:0.34:584
chr16	33965666	.	G	A	5350.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.471;ClippingRankSum=0.000;DP=579;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.47;MQRankSum=2.035;QD=9.40;ReadPosRankSum=0.950;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:418,151:0.27:569
chr16	33965669	.	C	G	4732.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.807;ClippingRankSum=0.000;DP=555;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.56;MQRankSum=3.051;QD=8.67;ReadPosRankSum=2.214;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:411,135:0.25:546
chr16	33965672	.	C	T	2539.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.216;ClippingRankSum=0.000;DP=546;ExcessHet=3.0103;FS=4.969;MLEAC=1;MLEAF=0.500;MQ=59.63;MQRankSum=2.176;QD=4.73;ReadPosRankSum=-0.948;SOR=0.352;set=HC	GT:AD:AF:DP	0/1:445,92:0.17:537
chr16	33965681	.	G	GA	4265.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.901;ClippingRankSum=0.000;DP=480;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.74;MQRankSum=1.800;QD=9.06;ReadPosRankSum=1.258;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:348,123:0.26:471
chr16	33965684	.	C	T	2039.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.502;ClippingRankSum=0.000;DP=459;ExcessHet=3.0103;FS=6.820;MLEAC=1;MLEAF=0.500;MQ=59.73;MQRankSum=1.377;QD=4.53;ReadPosRankSum=-1.495;SOR=0.302;set=HC	GT:AD:AF:DP	0/1:373,77:0.17:450
chr16	33965685	.	G	A	1833.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.309;ClippingRankSum=0.000;DP=447;ExcessHet=3.0103;FS=7.884;MLEAC=1;MLEAF=0.500;MQ=59.73;MQRankSum=0.467;QD=4.22;ReadPosRankSum=3.619;SOR=1.439;set=HC	GT:AD:AF:DP	0/1:353,82:0.19:435
chr16	33965687	rs78198861	C	T	5027.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.490;ClippingRankSum=0.000;DB;DP=430;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.77;MQRankSum=-1.782;QD=11.91;ReadPosRankSum=0.503;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:284,138:0.33:422
chr16	33965688	.	G	C	1914.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.199;ClippingRankSum=0.000;DP=417;ExcessHet=3.0103;FS=2.972;MLEAC=1;MLEAF=0.500;MQ=59.79;MQRankSum=0.962;QD=4.68;ReadPosRankSum=-0.324;SOR=0.367;set=HC	GT:AD:AF:DP	0/1:346,63:0.15:409
chr16	33965690	rs74964080	C	T	3918.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.949;ClippingRankSum=0.000;DB;DP=398;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.78;MQRankSum=-0.630;QD=10.05;ReadPosRankSum=0.401;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:283,107:0.27:390
chr16	33965696	.	C	T	1041.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.921;ClippingRankSum=0.000;DP=359;ExcessHet=3.0103;FS=1.267;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=0.655;QD=2.97;ReadPosRankSum=0.315;SOR=0.579;set=HC	GT:AD:AF:DP	0/1:290,61:0.17:351
chr16	33965701	.	C	T	1522.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.084;ClippingRankSum=0.000;DP=337;ExcessHet=3.0103;FS=12.236;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=-1.233;QD=4.67;ReadPosRankSum=-1.286;SOR=0.254;set=HC	GT:AD:AF:DP	0/1:270,56:0.17:326
chr16	33965705	.	G	A	1476.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.516;ClippingRankSum=0.000;DP=318;ExcessHet=3.0103;FS=15.219;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=0.000;QD=4.81;ReadPosRankSum=2.209;SOR=1.864;set=HC	GT:AD:AF:DP	0/1:257,50:0.16:307
chr16	33965708	.	G	A	5125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.870;ClippingRankSum=0.000;DP=300;ExcessHet=3.0103;FS=7.830;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=0.909;QD=17.55;ReadPosRankSum=1.447;SOR=1.155;set=HC	GT:AD:AF:DP	0/1:161,131:0.45:292
chr16	33965711	rs76711006	G	A	8893.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:67,208:0.76:275
chr16	33965717	.	G	A	1000.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.962;ClippingRankSum=0.000;DP=245;ExcessHet=3.0103;FS=8.050;MLEAC=1;MLEAF=0.500;MQ=59.83;MQRankSum=0.447;QD=4.20;ReadPosRankSum=-0.329;SOR=0.220;set=HC	GT:AD:AF:DP	0/1:200,38:0.16:238
chr16	33965727	.	C	T	2009.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.088;ClippingRankSum=0.000;DP=220;ExcessHet=3.0103;FS=1.808;MLEAC=1;MLEAF=0.500;MQ=59.81;MQRankSum=0.613;QD=9.39;ReadPosRankSum=-0.091;SOR=0.482;set=HC	GT:AD:AF:DP	0/1:157,57:0.27:214
chr16	33965729	.	T	C	770.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.479;ClippingRankSum=0.000;DP=214;ExcessHet=3.0103;FS=8.487;MLEAC=1;MLEAF=0.500;MQ=59.81;MQRankSum=0.432;QD=3.71;ReadPosRankSum=1.183;SOR=0.159;set=HC	GT:AD:AF:DP	0/1:177,31:0.15:208
chr16	33965731	.	C	T	1856.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.085;ClippingRankSum=0.000;DP=204;ExcessHet=3.0103;FS=2.041;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=0.614;QD=9.33;ReadPosRankSum=-0.141;SOR=0.458;set=HC	GT:AD:AF:DP	0/1:146,53:0.27:199
chr16	33965735	.	C	T	1745.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.919;ClippingRankSum=0.000;DP=203;ExcessHet=3.0103;FS=0.979;MLEAC=1;MLEAF=0.500;MQ=59.69;MQRankSum=0.832;QD=8.82;ReadPosRankSum=0.471;SOR=0.516;set=HC	GT:AD:AF:DP	0/1:148,50:0.25:198
chr16	33965736	rs74212775	G	A	2525.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.876;ClippingRankSum=0.000;DB;DP=198;ExcessHet=3.0103;FS=3.127;MLEAC=1;MLEAF=0.500;MQ=59.69;MQRankSum=-1.810;QD=13.09;ReadPosRankSum=1.470;SOR=0.393;set=HC	GT:AD:AF:DP	0/1:120,73:0.38:193
chr16	33965741	rs111610856	C	T	1580.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.604;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=0.988;MLEAC=1;MLEAF=0.500;MQ=59.68;MQRankSum=0.635;QD=8.83;ReadPosRankSum=-0.280;SOR=0.525;set=HC	GT:AD:AF:DP	0/1:129,50:0.28:179
chr16	33965754	rs111429621	C	G	723.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.162;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=5.493;MLEAC=1;MLEAF=0.500;MQ=59.63;MQRankSum=0.466;QD=4.67;ReadPosRankSum=0.977;SOR=0.195;set=HC	GT:AD:AF:DP	0/1:129,26:0.17:155
chr16	33965761	.	GG	AA	979.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.054;ClippingRankSum=0.000;DP=151;ExcessHet=3.0103;FS=7.134;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.61;MQRankSum=0.539;QD=6.58;ReadPosRankSum=1.147;SOR=1.845;set=HC	GT:AD:AF:DP	0/1:117,32:0.21:149
chr16	34257303	rs142539350	C	A	6164.77	.	AC=1;AF=0.500;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	0/1:188,280:0.60:468
chr16	34318731	rs6563853	T	G	11840.77	.	AC=2;AF=1.00;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	1/1:0,408:1.00:408
chr16	34490107	rs80196887	G	A	2560.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:179,133:0.43:312
chr16	34681938	rs237988	C	T	5518.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr16	34682019	rs237989	G	A	4510.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr16	46565019	rs1436436	T	G	5001.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr16	46602819	rs12934443	C	T	7999.77	.	AC=1;AF=0.500;AN=2;DB;DP=1052;set=Intersection	GT:AD:AF:DP	0/1:619,411:0.40:1030
chr16	46637448	rs34474615	C	T	5255.77	.	AC=1;AF=0.500;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	0/1:167,241:0.59:408
chr16	46637746	rs4967259	T	C	3886.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr16	46642456	rs8052092	A	G	650.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr16	46651417	rs34949348	TA	T	1388.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr16	46655210	rs6598679	A	G	15648.77	.	AC=2;AF=1.00;AN=2;DB;DP=612;set=Intersection	GT:AD:AF:DP	1/1:1,603:1.00:604
chr16	46694732	rs33973421	C	CA	51.82	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=8.64;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr16	46696284	rs168745	G	A	11409.77	.	AC=2;AF=1.00;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	1/1:0,419:1.00:419
chr16	46697098	rs2304492	A	G	1948.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:94,88:0.48:182
chr16	46705502	rs36310	T	C	2646.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr16	46708574	.	T	TA	176.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.402;ClippingRankSum=0.000;DP=56;ExcessHet=3.0103;FS=1.149;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.40;ReadPosRankSum=-0.172;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:34,18:0.35:52
chr16	46714529	rs700582	A	G	4875.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr16	46715191	rs700581	G	A	3399.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr16	46723598	rs33994299	T	C	4973.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.460;ClippingRankSum=0.000;DB;DP=698;ExcessHet=3.0103;FS=1.137;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.20;ReadPosRankSum=1.135;SOR=0.750;set=HC	GT:AD:AF:DP	0/1:427,264:0.38:691
chr16	46743355	rs11420228	G	GA	628.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.756;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=3.086;MLEAC=1;MLEAF=0.500;MQ=60.36;MQRankSum=1.566;QD=7.58;ReadPosRankSum=-0.768;SOR=0.290;set=HC	GT:AD:AF:DP	0/1:34,49:0.59:83
chr16	46743675	rs4141491	G	A	8783.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr16	46755213	rs194055	C	G	2645.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr16	46764482	rs36460	A	C	6446.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr16	46773752	rs28185	G	T	785.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr16	46773999	rs28407821	C	A	1319.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:107,69:0.39:176
chr16	47001626	rs2034598	G	A	3502.77	.	AC=1;AF=0.500;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	0/1:239,178:0.43:417
chr16	47005573	.	T	TAAAAAAAAA	38.19	.	AC=2;AF=1.00;AN=2;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.09;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr16	47347780	rs2058769	G	A	1727.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:143,97:0.40:240
chr16	47399670	rs76973321	CT	C	361.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.687;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=3.136;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.51;ReadPosRankSum=0.198;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:59,44:0.43:103
chr16	47462851	rs17811434	A	G	494.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:49,24:0.33:73
chr16	47486817	rs2111227	C	T	223.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:5,9:0.64:14
chr16	47684686	rs150516784	TATTA	T	1243.73	.	AC=1;AF=0.500;AN=2;DB;DP=120;MQ=60.09;set=Intersection	GT:AD:AF:DP	0/1:74,36:0.33:110
chr16	47732512	rs5816579	C	CTT	96.27	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.967;ClippingRankSum=-0.000;DB;DP=31;ExcessHet=3.0103;FS=3.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.70;ReadPosRankSum=-1.593;SOR=0.916;set=HC	GT:AD:AF:DP	0/1:1,8:0.89:9
chr16	48117659	rs12373105	A	T	4942.77	.	AC=1;AF=0.500;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	0/1:177,216:0.55:393
chr16	48122582	rs7193955	G	A	9565.77	.	AC=2;AF=1.00;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	1/1:0,358:1.00:358
chr16	48164777	rs12149826	T	C	4150.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:135,180:0.57:315
chr16	48333493	.	TA	T	476.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.140;ClippingRankSum=0.000;DP=74;ExcessHet=3.0103;FS=1.209;MLEAC=1;MLEAF=0.500;MQ=59.58;MQRankSum=-0.501;QD=6.62;ReadPosRankSum=1.765;SOR=0.483;set=HC	GT:AD:AF:DP	0/1:34,38:0.53:72
chr16	48390512	rs8053839	G	T	1471.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr16	49412531	rs27813	A	G	11194.77	.	AC=2;AF=1.00;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	1/1:3,429:0.99:432
chr16	49557441	rs2287313	A	C	5799.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr16	49557482	rs2287314	C	T	9662.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:0,354:1.00:354
chr16	50059279	rs9934704	C	A	1998.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr16	50059314	rs9924833	A	G	1661.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr16	50059500	rs7194313	C	T	7047.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr16	50067905	rs9302745	G	A	2783.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr16	50069228	rs9927260	G	A	975.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:48,44:0.48:92
chr16	50069312	rs2041918	C	G	2556.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:109,121:0.53:230
chr16	50100253	rs4389139	T	A	8298.77	.	AC=1;AF=0.500;AN=2;DB;DP=1020;set=Intersection	GT:AD:AF:DP	0/1:595,420:0.41:1015
chr16	50102618	rs60730387	G	GAAAT	9374.73	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr16	50106594	rs2287197	T	C	1567.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:108,80:0.43:188
chr16	50109478	rs12931497	G	A	2868.77	.	AC=1;AF=0.500;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	0/1:239,152:0.39:391
chr16	50112971	rs66756058	GT	G	656.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:3,36:0.92:39
chr16	50117828	rs5816672	CT	C	1535.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.983;ClippingRankSum=0.000;DB;DP=322;ExcessHet=3.0103;FS=1.774;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=1.062;QD=5.17;ReadPosRankSum=-0.016;SOR=0.840;set=HC	GT:AD:AF:DP	0/1:141,156:0.53:297
chr16	50118245	rs877639	G	A	1207.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:114,62:0.35:176
chr16	50120122	rs2287196	C	T	435.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:14,18:0.56:32
chr16	50251671	rs10530119	G	GTCTCTCTC,GTCTCTCTCTC	2717.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=88;set=Intersection	GT:AF:DP	1/2:0.30,0.70:66
chr16	50261735	rs4624170	C	T	13319.77	.	AC=2;AF=1.00;AN=2;DB;DP=499;set=Intersection	GT:AD:AF:DP	1/1:0,494:1.00:494
chr16	50323211	rs13332825	T	C	2329.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:76,107:0.58:183
chr16	50326661	rs8051594	A	G	22840.77	.	AC=2;AF=1.00;AN=2;DB;DP=872;set=Intersection	GT:AD:AF:DP	1/1:0,870:1.00:870
chr16	50327439	rs2302712	A	G	2623.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:151,131:0.46:282
chr16	50327456	rs2302713	C	T	6264.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.050;ClippingRankSum=0.000;DB;DP=238;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=27.48;ReadPosRankSum=0.100;SOR=1.315;set=HC	GT:AD:AF:DP	1/1:2,226:0.99:228
chr16	50327456	.	CCCACCG	TCCACCA,TCCACCG	1387	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.39;FR=0.5000,0.5000;HP=3;HapScore=2;MGOF=10;MMLQ=28;MQ=59.9;NF=25,62;NR=52,118;PP=1242,1387;QD=16.8242581151;SC=GGGGACTGGGCCCACCGTTCC;SbPval=0.64;Source=Platypus;TC=182;TCF=63;TCR=119;TR=77,180;WE=50327470;WS=50327446;set=Platypus	GT:AF:DP	0/1:0.42:182
chr16	50327462	rs2302714	G	A	2076.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.894;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=0.529;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.03;ReadPosRankSum=-1.460;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:109,98:0.47:207
chr16	50328421	rs2302716	T	C	1366.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr16	50328483	rs8061123	G	C	1196.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:38,57:0.60:95
chr16	50334840	rs3833062	AG	A	2257.73	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:124,83:0.40:207
chr16	50335150	rs35262781	TG	T	1653.73	.	AC=1;AF=0.500;AN=2;DB;DP=228;MQ=60.05;set=Intersection	GT:AD:AF:DP	0/1:126,74:0.37:200
chr16	50338723	rs9924714	C	T	3475.77	.	AC=1;AF=0.500;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	0/1:217,164:0.43:381
chr16	50339289	rs12444679	C	T	3023.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:161,144:0.47:305
chr16	50342847	rs2302681	C	G	2985.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr16	50345710	.	GCCC	G,GC	1715.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.898;ClippingRankSum=0.000;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.09;MQRankSum=0.000;QD=29.08;ReadPosRankSum=2.253;SOR=0.850;set=HC	GT:AD:AF:DP	1/2:5,29,25:0.49,0.42:59
chr16	50345778	rs2302679	T	C	1522.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr16	50346114	rs67323835	AGGGGCT	A	8556.73	.	AC=1;AF=0.500;AN=2;DB;DP=584;set=Intersection	GT:AD:AF:DP	0/1:289,237:0.45:526
chr16	50346748	rs3214383	T	TCC	2549.73	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr16	50348409	rs9926131	A	T	1267.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:43,51:0.54:94
chr16	50348813	rs3841348	AGTT	A	217.73	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:13,7:0.35:20
chr16	50355996	rs7184802	G	A	502.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:53,28:0.35:81
chr16	50359901	rs8046783	G	A	1376.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr16	50367633	rs56370009	T	TA	529.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.312;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=3.171;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.27;ReadPosRankSum=-0.366;SOR=0.105;set=HC	GT:AD:AF:DP	1/1:2,27:0.93:29
chr16	50368863	rs143461189	GCATTTTTTTCCCCA	G	1331.73	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:20,34:0.63:54
chr16	50402569	rs113637419	C	T	350.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:19,19:0.50:38
chr16	50642201	rs933566	G	C	17649.77	.	AC=2;AF=1.00;AN=2;DB;DP=661;set=Intersection	GT:AD:AF:DP	1/1:2,657:1.00:659
chr16	50733859	rs2067085	C	G	2965.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:117,137:0.54:254
chr16	50733969	rs2111235	A	G	997.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:32,42:0.57:74
chr16	50743919	rs34133110	C	T	4432.77	.	AC=1;AF=0.500;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	0/1:168,206:0.55:374
chr16	50745583	rs1861759	T	G	5229.77	.	AC=1;AF=0.500;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	0/1:137,228:0.62:365
chr16	50757050	rs11423748	G	GA	111.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.536;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.93;ReadPosRankSum=-0.914;SOR=0.814;set=HC	GT:AD:AF:DP	0/1:41,17:0.29:58
chr16	50759267	rs138198313	AC	A	643.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:24,18:0.43:42
chr16	50759269	rs4990643	T	A	652.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:24,18:0.43:42
chr16	50759547	rs1077861	A	T	1175.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:37,53:0.59:90
chr16	50827601	rs2302759	A	G	4213.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:124,176:0.59:300
chr16	50841484	rs1054987	G	A	2160.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:94,105:0.53:199
chr16	51098557	rs74876208	T	C	1517.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:51,69:0.57:120
chr16	51098662	rs72266971	AAC	A	32.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.656;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=2.456;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.36;ReadPosRankSum=-0.393;SOR=0.160;set=HC	GT:AD:AF:DP	0/1:19,5:0.21:24
chr16	51171175	rs4614723	C	T	13592.77	.	AC=2;AF=1.00;AN=2;DB;DP=513;set=Intersection	GT:AD:AF:DP	1/1:0,503:1.00:503
chr16	51173559	rs1965024	G	A	18609.77	.	AC=2;AF=1.00;AN=2;DB;DP=670;set=Intersection	GT:AD:AF:DP	1/1:2,657:1.00:659
chr16	51177113	rs4399530	A	C	2905.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr16	51177327	rs34204387	G	GAA,GAAA	9407.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.691;ClippingRankSum=0.000;DB;DP=426;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.35;MQRankSum=0.491;QD=27.27;ReadPosRankSum=-2.102;SOR=0.807;set=HC	GT:AD:AF:DP	1/2:9,222,114:0.64,0.33:345
chr16	52085593	rs1582317	A	G	8606.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr16	52107849	rs33338	C	A	6756.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr16	52473263	rs9925256	A	G	2944.77	.	AC=1;AF=0.500;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	0/1:205,143:0.41:348
chr16	52479771	rs2075236	A	T	1371.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:24,50:0.68:74
chr16	52502318	rs2287144	A	G	4440.77	.	AC=1;AF=0.500;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	0/1:161,215:0.57:376
chr16	52502571	rs9928698	A	C	1874.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:60,72:0.55:132
chr16	52837310	rs4784258	C	T	1894.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr16	52837322	rs4784259	A	C	2119.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.40;SOR=1.958;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr16	52992947	rs9933492	T	C	9171.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.98;SOR=0.806;set=HC	GT:AD:AF:DP	1/1:0,353:1.00:353
chr16	52993016	rs9931362	A	C	11455.77	.	AC=2;AF=1.00;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	1/1:3,452:0.99:455
chr16	53035592	rs12149531	A	G	775.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:26,31:0.54:57
chr16	53037529	rs6499205	T	C	809.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr16	53191470	rs12597487	T	C	4522.77	.	AC=1;AF=0.500;AN=2;DB;DP=553;set=Intersection	GT:AD:AF:DP	0/1:329,222:0.40:551
chr16	53256494	rs12597253	T	A	196.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.096;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=1.599;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.79;ReadPosRankSum=1.107;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:24,10:0.29:34
chr16	53261172	rs141258719	A	G	181.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:5,7:0.58:12
chr16	53272216	rs8049913	A	C	1096.73	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:77,52:0.40:129
chr16	53279123	rs138968213	TA	T	176.73	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:19,8:0.30:27
chr16	53283966	rs8052283	G	A	1955.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:193,105:0.35:298
chr16	53288265	rs6499510	G	A	932.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:64,44:0.41:108
chr16	53308315	rs57281432	A	T	349.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:17,16:0.48:33
chr16	53319390	rs112281896	T	TAATGA	952.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr16	53320025	rs8056394	G	A	156.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:15,8:0.35:23
chr16	53321734	rs3815548	T	C	831.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:28,32:0.53:60
chr16	53325691	rs1894903	G	A	1785.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:130,91:0.41:221
chr16	53326860	rs2287078	G	A	6327.77	.	AC=1;AF=0.500;AN=2;DB;DP=914;set=Intersection	GT:AD:AF:DP	0/1:562,340:0.38:902
chr16	53327041	rs7188463	A	G	1235.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:68,52:0.43:120
chr16	53340080	rs3760010	G	A	1274.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:65,60:0.48:125
chr16	53341748	rs6499548	T	G	4191.77	.	AC=1;AF=0.500;AN=2;DB;DP=556;set=Intersection	GT:AD:AF:DP	0/1:341,204:0.37:545
chr16	53342860	rs12596466	C	T	603.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:68,30:0.31:98
chr16	53348207	rs8055218	T	A	138.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:24,8:0.25:32
chr16	53349000	rs12596829	G	A	1356.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:98,66:0.40:164
chr16	53352329	rs16952168	T	C	646.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:42,33:0.44:75
chr16	53358439	rs3743771	A	G	4458.77	.	AC=1;AF=0.500;AN=2;DB;DP=735;set=Intersection	GT:AD:AF:DP	0/1:467,248:0.35:715
chr16	53404203	rs10775327	C	A	5912.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr16	53476804	rs17800577	G	A	3662.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;MQ=60.07;set=Intersection	GT:AD:AF:DP	0/1:124,169:0.58:293
chr16	53481010	rs17800727	A	G	1663.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:70,80:0.53:150
chr16	53487218	rs9941254	C	T	917.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:20,34:0.63:54
chr16	53487589	rs17192524	G	A	1656.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:68,72:0.51:140
chr16	53493346	rs66521736	AT	A	622.73	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:30,41:0.58:71
chr16	53496439	rs60633139	G	GT	118.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.641;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=1.087;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=2.304;QD=1.65;ReadPosRankSum=-0.194;SOR=0.517;set=HC	GT:AD:AF:DP	0/1:54,18:0.25:72
chr16	53496598	rs7204496	G	A	1192.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:60,58:0.49:118
chr16	53499599	rs1072910	A	G	434.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:20,20:0.50:40
chr16	53503934	rs1131220	G	A	22310.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.627;ClippingRankSum=0.000;DB;DP=1034;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.96;ReadPosRankSum=0.308;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:446,570:0.56:1016
chr16	53503943	rs11540358	C	G	22441.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.019;ClippingRankSum=0.000;DB;DP=1037;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.02;ReadPosRankSum=-0.368;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:437,582:0.57:1019
chr16	53504721	rs10748	T	C	7738.77	.	AC=1;AF=0.500;AN=2;DB;DP=561;set=Intersection	GT:AD:AF:DP	0/1:216,342:0.61:558
chr16	53513033	rs8043918	C	T	5558.77	.	AC=1;AF=0.500;AN=2;DB;DP=497;set=Intersection	GT:AD:AF:DP	0/1:232,262:0.53:494
chr16	53513055	rs8049033	T	C	5749.77	.	AC=1;AF=0.500;AN=2;DB;DP=523;set=Intersection	GT:AD:AF:DP	0/1:243,276:0.53:519
chr16	53524308	rs3929	G	C	2828.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:98,116:0.54:214
chr16	53526551	rs9931702	C	T	3362.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:106,154:0.59:260
chr16	53635933	rs4784319	A	T	1532.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:47,68:0.59:115
chr16	53656135	rs111775292	G	C	254.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.093;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=1.862;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.74;ReadPosRankSum=-1.522;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:7,13:0.65:20
chr16	53672355	rs7203525	C	T	1513.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:49,65:0.57:114
chr16	53699003	rs4133017	G	A	1304.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:77,63:0.45:140
chr16	53738283	rs4783818	A	T	1873.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:60,80:0.57:140
chr16	53860481	rs3826169	G	A	4203.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr16	53878247	rs62033438	A	G	239.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:23,11:0.32:34
chr16	53913930	rs11076004	G	A	1693.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:50,66:0.57:116
chr16	54018700	rs5816914	CTAAG	C	1238.73	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:53,35:0.40:88
chr16	54273780	rs17253625	C	T	2638.77	.	AC=1;AF=0.500;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	0/1:250,144:0.37:394
chr16	54273895	rs17175104	G	A	3577.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:147,169:0.53:316
chr16	54274354	rs16953243	A	C	1278.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:108,61:0.36:169
chr16	54274562	rs17253832	T	C	3121.77	.	AC=1;AF=0.500;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	0/1:203,153:0.43:356
chr16	54274615	rs55970991	G	T	1431.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:87,64:0.42:151
chr16	54279640	rs72811791	G	T	1246.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:85,61:0.42:146
chr16	54279687	rs16953255	G	C	1098.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.132;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=9.549;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.85;ReadPosRankSum=-0.299;SOR=1.969;set=HC	GT:AD:AF:DP	0/1:43,31:0.42:74
chr16	54279693	rs72811792	A	G	1050.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.694;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=10.335;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.45;ReadPosRankSum=-0.608;SOR=2.165;set=HC	GT:AD:AF:DP	0/1:40,28:0.41:68
chr16	54318102	rs8050831	C	T	5360.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr16	54318172	rs1126960	C	A	3406.77	.	AC=1;AF=0.500;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	0/1:236,177:0.43:413
chr16	54318528	rs1450355	A	G	2193.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.12;SOR=1.754;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr16	54319279	.	T	C	1700.77	.	AC=1;AF=0.500;AN=2;DP=248;set=Intersection	GT:AD:AF:DP	0/1:160,84:0.34:244
chr16	54319571	rs1868692	A	G	7509.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr16	54319994	rs1868691	G	C	1691.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr16	54691273	rs4784409	C	A	3435.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.279;ClippingRankSum=0.000;DB;DP=270;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.97;ReadPosRankSum=-0.298;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:108,157:0.59:265
chr16	55359126	rs31078	A	T	5205.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr16	55359141	rs31079	T	C	5092.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr16	55360208	rs31081	G	T	3110.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.273;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=117.321;MLEAC=2;MLEAF=1.000;MQ=60.07;MQRankSum=-3.354;QD=20.88;ReadPosRankSum=4.036;SOR=5.114;set=HC	GT:AD:AF:DP	1/1:12,137:0.92:149
chr16	55361493	rs31082	C	T	1340.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:159,78:0.33:237
chr16	55362502	rs31085	G	A	266.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:21,13:0.38:34
chr16	55362542	rs31086	C	G	828.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:48,38:0.44:86
chr16	55363238	rs31087	G	A	2775.77	.	AC=1;AF=0.500;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	0/1:195,136:0.41:331
chr16	55515695	rs708269	A	T	4523.77	.	AC=1;AF=0.500;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	0/1:174,217:0.55:391
chr16	55516708	rs857403	T	A	1658.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr16	55523705	rs243849	T	C	13595.77	.	AC=2;AF=1.00;AN=2;DB;DP=524;set=Intersection	GT:AD:AF:DP	1/1:0,513:1.00:513
chr16	55525913	rs243846	G	C	2305.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.50;SOR=3.083;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr16	55527298	rs243843	G	A	2822.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr16	55530762	rs171498	G	T	3057.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.32;SOR=2.867;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr16	55530772	rs243838	T	G	2873.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.84;SOR=2.690;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr16	55536622	rs243835	C	T	4078.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr16	55536687	rs243834	A	G	7406.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr16	55539191	rs243832	C	G	6455.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr16	55562257	rs837549	G	A	3815.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr16	55562466	rs837550	G	A	9870.77	.	AC=1;AF=0.500;AN=2;DB;DP=845;set=Intersection	GT:AD:AF:DP	0/1:365,457:0.56:822
chr16	55562572	rs71393085	T	C	1881.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:98,79:0.45:177
chr16	55579899	rs2397722	G	A	1118.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr16	55583149	rs2160277	T	A	1758.73	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.14;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr16	55583448	rs9934904	A	T	591.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr16	55601388	rs1502003	A	G	11585.77	.	AC=2;AF=1.00;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	1/1:2,423:1.00:425
chr16	55612918	rs4784549	T	A	396.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr16	55617127	rs12934747	C	T	942.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr16	55728081	rs28613651	T	G	3687.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr16	55731835	rs5569	G	A	8279.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr16	55731946	rs998424	G	A	11263.77	.	AC=2;AF=1.00;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	1/1:0,415:1.00:415
chr16	55733589	rs1800887	T	C	4548.77	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:136,205:0.60:341
chr16	55735912	rs2242447	C	T	3451.77	.	AC=1;AF=0.500;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	0/1:230,176:0.43:406
chr16	55806311	rs28538364	G	T	5672.77	.	AC=1;AF=0.500;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	0/1:204,258:0.56:462
chr16	55806409	rs28366434	T	C	6326.77	.	AC=1;AF=0.500;AN=2;DB;DP=496;set=Intersection	GT:AD:AF:DP	0/1:208,286:0.58:494
chr16	55806532	rs143032941	C	CAATACCT	8511.73	.	AC=1;AF=0.500;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	0/1:128,213:0.62:341
chr16	55807252	rs62030211	G	T	979.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.028;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=3.328;MLEAC=1;MLEAF=0.500;MQ=56.99;MQRankSum=-4.559;QD=9.42;ReadPosRankSum=0.832;SOR=0.341;set=HC	GT:AD:AF:DP	0/1:75,29:0.28:104
chr16	55807256	rs60044394	A	G	976.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.611;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=4.434;MLEAC=1;MLEAF=0.500;MQ=56.55;MQRankSum=-4.363;QD=9.21;ReadPosRankSum=-0.388;SOR=0.357;set=HC	GT:AD:AF:DP	0/1:76,30:0.28:106
chr16	55807448	rs149224370	C	T	321.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.690;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=2.486;MLEAC=1;MLEAF=0.500;MQ=39.75;MQRankSum=0.242;QD=8.47;ReadPosRankSum=-0.484;SOR=0.138;set=HC	GT:AD:AF:DP	0/1:27,11:0.29:38
chr16	55807461	rs28444662	C	A	241.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.236;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=2.242;MLEAC=1;MLEAF=0.500;MQ=39.71;MQRankSum=-0.138;QD=8.34;ReadPosRankSum=-1.366;SOR=0.216;set=HC	GT:AD:AF:DP	0/1:21,8:0.28:29
chr16	55813552	rs28666799	C	T	1363.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:47,63:0.57:110
chr16	55813600	rs28538101	T	C	1850.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:75,85:0.53:160
chr16	55813644	rs28418425	C	T	2137.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:92,99:0.52:191
chr16	55813712	rs28613114	G	T	1673.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:73,80:0.52:153
chr16	55813750	rs28594163	G	A	1032.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:43,50:0.54:93
chr16	55844609	rs2244613	G	T	8464.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.33;SOR=0.909;set=HC	GT:AD:AF:DP	1/1:0,233:1.00:233
chr16	55844609	.	GGGTGAGCG	TGGTGAGCA,TGGTGAGCG	1434	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.38;FR=0.5000,0.5000;HP=4;HapScore=2;MGOF=1;MMLQ=28;MQ=60.0;NF=42,77;NR=47,95;PP=1434,1009;QD=16.7131221895;SC=CACCAGCCCCGGGTGAGCGAT;SbPval=0.45;Source=Platypus;TC=173;TCF=77;TCR=96;TR=89,172;WE=55844625;WS=55844599;set=Platypus	GT:AF:DP	0/1:0.51:173
chr16	55844617	rs2244614	G	A	2734.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.010;ClippingRankSum=0.000;DB;DP=223;ExcessHet=3.0103;FS=1.674;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.49;ReadPosRankSum=-0.642;SOR=0.572;set=HC	GT:AD:AF:DP	0/1:92,127:0.58:219
chr16	55844924	.	TA	T	898.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.434;ClippingRankSum=0.000;DP=195;ExcessHet=3.0103;FS=1.184;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.68;ReadPosRankSum=0.378;SOR=0.580;set=HC	GT:AD:AF:DP	0/1:117,75:0.39:192
chr16	55844926	rs112236246	A	AC	772.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.155;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=2.616;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.02;ReadPosRankSum=1.857;SOR=0.929;set=HC	GT:AD:AF:DP	0/1:121,71:0.37:192
chr16	55844928	rs375953001	A	C	869.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.384;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=0.548;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.46;ReadPosRankSum=0.906;SOR=0.618;set=HC	GT:AD:AF:DP	0/1:123,72:0.37:195
chr16	55845084	.	T	TG	3595.73	.	AC=2;AF=1.00;AN=2;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr16	55845122	rs146150314	C	CA	427.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.832;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=1.124;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.50;ReadPosRankSum=0.513;SOR=0.437;set=HC	GT:AD:AF:DP	0/1:27,30:0.53:57
chr16	55847045	rs3859092	A	G	5519.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.401;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=42.14;ReadPosRankSum=1.806;SOR=1.424;set=HC	GT:AD:AF:DP	1/1:1,130:0.99:131
chr16	55847051	rs3859093	C	T	5328.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.34;SOR=2.874;set=HC	GT:AD:AF:DP	1/1:0,115:1.00:115
chr16	55850708	rs2302719	T	G	1446.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr16	55854196	rs12444825	G	A	68.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.208;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=40.00;MQRankSum=-0.000;QD=6.25;ReadPosRankSum=0.542;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:7,4:0.36:11
chr16	55854246	.	G	T	172.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.269;ClippingRankSum=0.000;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=39.68;MQRankSum=-1.418;QD=8.64;ReadPosRankSum=0.610;SOR=0.197;set=HC	GT:AD:AF:DP	0/1:14,6:0.30:20
chr16	55854259	rs2307237	G	A	244.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.153;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=39.59;MQRankSum=-0.613;QD=7.90;ReadPosRankSum=-0.323;SOR=0.173;set=HC	GT:AD:AF:DP	0/1:22,9:0.29:31
chr16	55854412	rs2307229	A	T	2761.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.568;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=7.248;MLEAC=1;MLEAF=0.500;MQ=51.07;MQRankSum=0.255;QD=15.69;ReadPosRankSum=-1.902;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:53,123:0.70:176
chr16	55854452	rs2307233	G	A	4294.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.048;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=0.676;MLEAC=1;MLEAF=0.500;MQ=54.02;MQRankSum=2.582;QD=27.89;ReadPosRankSum=6.314;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:47,107:0.69:154
chr16	55854455	rs2307235	A	C	4272.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.456;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=0.671;MLEAC=1;MLEAF=0.500;MQ=54.13;MQRankSum=2.702;QD=27.93;ReadPosRankSum=6.728;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:47,106:0.69:153
chr16	55854473	rs4784587	T	C	181.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.958;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=5.169;MLEAC=1;MLEAF=0.500;MQ=55.27;MQRankSum=-4.653;QD=1.48;ReadPosRankSum=-6.134;SOR=0.263;set=HC	GT:AD:AF:DP	0/1:101,22:0.18:123
chr16	55854514	rs8192940	G	A	1822.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr16	55857396	rs150951789	A	C	2067.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:134,94:0.41:228
chr16	55862571	rs79647997	A	T	1338.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.615;ClippingRankSum=0.000;DB;DP=228;ExcessHet=3.0103;FS=2.351;MLEAC=1;MLEAF=0.500;MQ=59.17;MQRankSum=-4.796;QD=5.87;ReadPosRankSum=-3.059;SOR=0.497;set=HC	GT:AD:AF:DP	0/1:184,44:0.19:228
chr16	55862583	rs77360769	G	T	1880.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.704;ClippingRankSum=0.000;DB;DP=299;ExcessHet=3.0103;FS=1.163;MLEAC=1;MLEAF=0.500;MQ=59.32;MQRankSum=-4.795;QD=6.31;ReadPosRankSum=-1.764;SOR=0.789;set=HC	GT:AD:AF:DP	0/1:236,62:0.21:298
chr16	55862590	rs79821028	G	T	1950.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.734;ClippingRankSum=0.000;DB;DP=331;ExcessHet=3.0103;FS=0.515;MLEAC=1;MLEAF=0.500;MQ=59.39;MQRankSum=-4.727;QD=5.95;ReadPosRankSum=-0.964;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:259,69:0.21:328
chr16	55862605	rs3848300	G	A	12333.77	.	AC=2;AF=1.00;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	1/1:0,408:1.00:408
chr16	55862647	rs62028646	A	G	3167.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.122;ClippingRankSum=0.000;DB;DP=707;ExcessHet=3.0103;FS=2.804;MLEAC=1;MLEAF=0.500;MQ=59.77;MQRankSum=-5.483;QD=4.50;ReadPosRankSum=-0.666;SOR=0.942;set=HC	GT:AD:AF:DP	0/1:508,196:0.28:704
chr16	55862691	rs62028647	G	A	3051.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.945;ClippingRankSum=0.000;DB;DP=754;ExcessHet=3.0103;FS=3.689;MLEAC=1;MLEAF=0.500;MQ=59.65;MQRankSum=-5.265;QD=4.09;ReadPosRankSum=2.076;SOR=1.019;set=HC	GT:AD:AF:DP	0/1:540,206:0.28:746
chr16	55862717	rs76828834	T	C	6153.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.157;ClippingRankSum=0.000;DB;DP=656;ExcessHet=3.0103;FS=1.238;MLEAC=1;MLEAF=0.500;MQ=59.28;MQRankSum=-9.993;QD=9.45;ReadPosRankSum=-1.209;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:464,187:0.29:651
chr16	55862720	rs74019278	T	C	6114.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.747;ClippingRankSum=0.000;DB;DP=639;ExcessHet=3.0103;FS=1.950;MLEAC=1;MLEAF=0.500;MQ=59.21;MQRankSum=-10.389;QD=9.63;ReadPosRankSum=-1.223;SOR=0.873;set=HC	GT:AD:AF:DP	0/1:452,183:0.29:635
chr16	55862762	rs3826194	C	G	2514.77	.	AC=1;AF=0.500;AN=2;DB;DP=572;set=Intersection	GT:AD:AF:DP	0/1:413,151:0.27:564
chr16	55862791	rs114632091	T	C	2752.77	.	AC=1;AF=0.500;AN=2;DB;DP=590;set=Intersection	GT:AD:AF:DP	0/1:411,171:0.29:582
chr16	55862824	rs3826192	C	T	6528.77	.	AC=1;AF=0.500;AN=2;DB;DP=814;set=Intersection	GT:AD:AF:DP	0/1:536,264:0.33:800
chr16	55862836	rs3826191	G	A	7325.77	.	AC=1;AF=0.500;AN=2;DB;DP=909;set=Intersection	GT:AD:AF:DP	0/1:598,303:0.34:901
chr16	55862883	rs3826190	C	A	7193.77	.	AC=1;AF=0.500;AN=2;DB;DP=1177;set=Intersection	GT:AD:AF:DP	0/1:807,359:0.31:1166
chr16	55862901	rs3826189	T	G	6801.77	.	AC=1;AF=0.500;AN=2;DB;DP=1150;set=Intersection	GT:AD:AF:DP	0/1:802,338:0.30:1140
chr16	55862955	.	G	C	3921.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.359;ClippingRankSum=0.000;DP=710;ExcessHet=3.0103;FS=17.755;MLEAC=1;MLEAF=0.500;MQ=58.60;MQRankSum=-21.087;QD=5.58;ReadPosRankSum=-3.122;SOR=1.910;set=HC	GT:AD:AF:DP	0/1:566,137:0.19:703
chr16	55862958	rs3826188	GC	AG	1407.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.773;ClippingRankSum=0.000;DB;DP=682;ExcessHet=3.0103;FS=14.132;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.58;MQRankSum=-21.239;QD=2.09;ReadPosRankSum=-3.215;SOR=1.910;set=HC	GT:AD:AF:DP	0/1:551,123:0.18:674
chr16	55862961	rs3826187	T	A	3576.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.279;ClippingRankSum=0.000;DB;DP=664;ExcessHet=3.0103;FS=14.084;MLEAC=1;MLEAF=0.500;MQ=58.54;MQRankSum=-21.878;QD=5.41;ReadPosRankSum=-3.582;SOR=1.835;set=HC	GT:AD:AF:DP	0/1:540,121:0.18:661
chr16	55866894	rs56278207	T	TA	12403.73	.	AC=1;AF=0.500;AN=2;DB;DP=614;set=Intersection	GT:AD:AF:DP	0/1:256,354:0.58:610
chr16	55867128	.	T	C	75.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.141;ClippingRankSum=0.000;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.03;MQRankSum=-5.896;QD=1.33;ReadPosRankSum=-1.745;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:48,9:0.16:57
chr16	55883618	rs2160276	T	C	2439.77	.	AC=1;AF=0.500;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	0/1:235,135:0.36:370
chr16	55883761	rs7186875	A	C	391.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:37,21:0.36:58
chr16	55905636	rs3859108	A	G	9084.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:2,335:0.99:337
chr16	55907600	rs6416763	C	T	763.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:45,33:0.42:78
chr16	56226638	rs374523415	GCA	G	286.73	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:57,17:0.23:74
chr16	56228066	rs1190761	A	G	3959.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:121,174:0.59:295
chr16	56362725	rs2241952	T	C	13847.77	.	AC=2;AF=1.00;AN=2;DB;DP=537;set=Intersection	GT:AD:AF:DP	1/1:0,525:1.00:525
chr16	56368501	rs4784657	C	T	4377.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr16	56368689	rs1065375	C	T	19712.77	.	AC=2;AF=1.00;AN=2;DB;DP=736;set=Intersection	GT:AD:AF:DP	1/1:0,734:1.00:734
chr16	56377596	rs80302676	C	T	2008.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:42,80:0.66:122
chr16	56396486	rs4924	C	T	6452.77	.	AC=1;AF=0.500;AN=2;DB;DP=763;set=Intersection	GT:AD:AF:DP	0/1:424,319:0.43:743
chr16	56398010	rs144358339	C	T	3050.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:91,131:0.59:222
chr16	56401294	rs2241957	T	C	262.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:35,15:0.30:50
chr16	56436824	rs2440472	A	G	2776.77	.	AC=1;AF=0.500;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	0/1:231,148:0.39:379
chr16	56439014	rs117035805	A	G	3676.77	.	AC=1;AF=0.500;AN=2;DB;DP=491;set=Intersection	GT:AD:AF:DP	0/1:287,194:0.40:481
chr16	56441862	rs2920704	A	G	4932.77	.	AC=1;AF=0.500;AN=2;DB;DP=491;set=Intersection	GT:AD:AF:DP	0/1:234,247:0.51:481
chr16	56442066	rs4238787	C	T	1229.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:65,59:0.48:124
chr16	56458908	rs140279056	G	A	291.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:12,14:0.54:26
chr16	56459332	.	T	TCGCTGCCGCTGC	60.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.230;ClippingRankSum=-0.000;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.52;ReadPosRankSum=0.689;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:9,2:0.18:11
chr16	56468561	rs8056687	C	T	373.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:40,20:0.33:60
chr16	56485554	rs11076155	C	G	2781.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:124,126:0.50:250
chr16	56503762	.	C	CAAAA	54.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.068;ClippingRankSum=-0.000;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.82;ReadPosRankSum=-0.566;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:5,2:0.29:7
chr16	56504724	rs13337155	G	C	2015.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:51,80:0.61:131
chr16	56519423	rs8062526	T	C	3017.77	.	AC=1;AF=0.500;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	0/1:200,145:0.42:345
chr16	56535059	rs73547688	A	G	600.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:26,25:0.49:51
chr16	56535510	rs9929628	A	G	2018.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:112,98:0.47:210
chr16	56540190	rs4784675	G	C	2964.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:177,132:0.43:309
chr16	56548501	rs4784677	C	T	8937.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:0,330:1.00:330
chr16	56599221	rs182221	C	G	1731.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:70,79:0.53:149
chr16	56601720	rs666636	A	G	10535.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.45;SOR=1.076;set=HC	GT:AD:AF:DP	1/1:0,237:1.00:237
chr16	56601720	.	ATT	GTC	2947	.	AC=2;AF=1.00;AN=2;BRF=0.51;FR=1.0000;HP=3;HapScore=1;MGOF=2;MMLQ=24;MQ=59.84;NF=50;NR=81;PP=2947;QD=20;SC=TGTAAAACATATTGGAAGAGT;SbPval=0.49;Source=Platypus;TC=136;TCF=51;TCR=85;TR=131;WE=56601730;WS=56601710;set=Platypus	GT:AD:AF:DP	1/1:5,131:0.96:136
chr16	56601722	rs666647	T	C	5916.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.817;ClippingRankSum=0.000;DB;DP=235;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.50;ReadPosRankSum=-0.549;SOR=1.077;set=HC	GT:AD:AF:DP	1/1:2,230:0.99:232
chr16	56601833	rs12928152	GG	AC	382.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;JOINED;set=Intersection	GT:AD:AF:DP	0/1:31,12:0.28:43
chr16	56623191	rs7195310	C	T	840.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:34,35:0.51:69
chr16	56624079	rs11644094	A	G	1377.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:108,70:0.39:178
chr16	56660906	rs708274	G	T	6509.77	.	AC=1;AF=0.500;AN=2;DB;DP=848;set=Intersection	GT:AD:AF:DP	0/1:496,343:0.41:839
chr16	56666886	rs1827208	C	T	557.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:14,25:0.64:39
chr16	56667282	rs1827210	C	A	3245.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:127,141:0.53:268
chr16	56667614	rs2270836	C	T	2666.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:112,116:0.51:228
chr16	56667854	rs2270837	A	G	3529.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:132,161:0.55:293
chr16	56673227	rs11640851	C	A	7260.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:123,187:0.60:310
chr16	56673249	rs11647171	T	C	8804.77	.	AC=1;AF=0.500;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	0/1:174,259:0.60:433
chr16	56673290	rs7190725	G	T	3970.77	.	AC=1;AF=0.500;AN=2;DB;DP=589;set=Intersection	GT:AD:AF:DP	0/1:364,215:0.37:579
chr16	56673410	rs8049883	G	A	2480.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:180,124:0.41:304
chr16	56673436	rs58069153	A	AAG	8280.73	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr16	56673828	rs8052394	A	G	5184.77	.	AC=1;AF=0.500;AN=2;DB;DP=584;set=Intersection	GT:AD:AF:DP	0/1:330,242:0.42:572
chr16	56683626	rs7189840	G	A	1243.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:55,47:0.46:102
chr16	56686002	rs2070838	G	C	11110.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.04;QD=44.09;SOR=1.215;set=HC	GT:AD:AF:DP	1/1:0,252:1.00:252
chr16	56686005	rs4619400	T	A	11086.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.04;QD=45.25;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,245:1.00:245
chr16	56686030	rs964372	C	G	5266.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:1,182:0.99:183
chr16	56686380	rs2013775	T	C	23433.77	.	AC=2;AF=1.00;AN=2;DB;DP=892;set=Intersection	GT:AD:AF:DP	1/1:1,883:1.00:884
chr16	56686471	rs964374	G	T	27502.77	.	AC=2;AF=1.00;AN=2;DB;DP=1027;set=Intersection	GT:AD:AF:DP	1/1:0,1015:1.00:1015
chr16	56693261	rs2291957	G	T	1797.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:61,71:0.54:132
chr16	56701348	rs111359735	G	A	2292.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:189,122:0.39:311
chr16	56702000	rs904770	T	C	12674.77	.	AC=2;AF=1.00;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	1/1:0,449:1.00:449
chr16	56709728	rs8046181	G	C	6634.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.26;SOR=2.675;set=HC	GT:AD:AF:DP	1/1:0,157:1.00:157
chr16	56709729	rs8048049	A	G	6634.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.99;SOR=2.690;set=HC	GT:AD:AF:DP	1/1:0,158:1.00:158
chr16	56716347	rs34713543	C	A	3275.77	.	AC=1;AF=0.500;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	0/1:228,171:0.43:399
chr16	56718015	rs34700091	AT	A	1281.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.030;ClippingRankSum=0.000;DB;DP=425;ExcessHet=3.0103;FS=2.432;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.06;ReadPosRankSum=0.049;SOR=0.545;set=HC	GT:AD:AF:DP	0/1:159,157:0.50:316
chr16	56832302	rs9927884	C	T	1325.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:46,58:0.56:104
chr16	56852822	rs1561139	G	T	1786.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr16	56855496	rs2118017	C	G	3521.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr16	56864398	rs1561140	C	T	9043.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	1/1:0,335:1.00:335
chr16	56864618	rs4461062	C	T	2534.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr16	56868700	rs1347591	A	G	3589.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr16	56871469	rs145442551	TTTTATTGATTAC	T	3790.73	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:166,105:0.39:271
chr16	56872722	rs3764265	C	T	1771.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:112,79:0.41:191
chr16	56876467	rs5817078	CT	C	149.75	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.747;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=2.667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.81;ReadPosRankSum=-0.059;SOR=0.264;set=HC	GT:AD:AF:DP	0/1:4,13:0.76:17
chr16	56904587	rs1529927	C	G	17032.77	.	AC=2;AF=1.00;AN=2;DB;DP=631;set=Intersection	GT:AD:AF:DP	1/1:1,623:1.00:624
chr16	56911932	.	G	GTCCCTCCCTCCCTCTCTCCC	2977	.	AC=1;AF=0.500;AN=2;BRF=0.57;FR=0.5000;HP=2;HapScore=2;MGOF=13;MMLQ=23;MQ=57.22;NF=0;NR=18;PP=2977;QD=20;SC=AATGTCCTCCGTCCCTCCCTC;SbPval=1.0;Source=Platypus;TC=66;TCF=5;TCR=61;TR=18;WE=56911940;WS=56911922;set=Platypus	GT:AD:AF:DP	0/1:48,18:0.27:66
chr16	56926176	rs12443855	G	A	2954.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr16	56926828	rs2278489	T	C	6131.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr16	56933315	rs9922270	T	C	2886.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr16	56938134	rs17367381	C	T	1460.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:38,56:0.60:94
chr16	56966011	rs37025	G	A	16527.77	.	AC=2;AF=1.00;AN=2;DB;DP=621;set=Intersection	GT:AD:AF:DP	1/1:0,614:1.00:614
chr16	56966071	rs37024	T	G	24973.77	.	AC=2;AF=1.00;AN=2;DB;DP=967;set=Intersection	GT:AD:AF:DP	1/1:1,962:1.00:963
chr16	56967177	rs72786778	T	G	3893.77	.	AC=1;AF=0.500;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	0/1:237,185:0.44:422
chr16	56994394	rs61631085	GT	G	669.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.811;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=1.461;QD=5.49;ReadPosRankSum=-2.152;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:70,52:0.43:122
chr16	56994528	rs17231506	C	T	3470.77	.	AC=1;AF=0.500;AN=2;DB;DP=448;set=Intersection	GT:AD:AF:DP	0/1:260,183:0.41:443
chr16	56994894	rs4783961	G	A	3640.77	.	AC=1;AF=0.500;AN=2;DB;DP=491;set=Intersection	GT:AD:AF:DP	0/1:295,191:0.39:486
chr16	56995038	rs4783962	T	C	903.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:52,40:0.43:92
chr16	56995236	rs1800775	C	A	1863.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:174,105:0.38:279
chr16	56996158	rs3816117	T	C	1424.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:79,67:0.46:146
chr16	56996211	rs711752	G	A	1551.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:119,78:0.40:197
chr16	56996288	rs708272	G	A	1578.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.322;ClippingRankSum=0.000;DB;DP=224;ExcessHet=3.0103;FS=1.062;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.08;ReadPosRankSum=-0.491;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:139,84:0.38:223
chr16	57003723	rs891141	G	T	4702.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:1,153:0.99:154
chr16	57003977	rs891142	T	C	23106.77	.	AC=2;AF=1.00;AN=2;DB;DP=522;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.52;SOR=1.076;set=HC	GT:AD:AF:DP	1/1:0,519:1.00:519
chr16	57003980	rs891143	T	C	22996.77	.	AC=2;AF=1.00;AN=2;DB;DP=513;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.09;SOR=1.110;set=HC	GT:AD:AF:DP	1/1:0,510:1.00:510
chr16	57004889	rs7205804	G	A	4563.77	.	AC=1;AF=0.500;AN=2;DB;DP=646;set=Intersection	GT:AD:AF:DP	0/1:388,251:0.39:639
chr16	57005301	rs1532625	C	T	3352.77	.	AC=1;AF=0.500;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	0/1:232,172:0.43:404
chr16	57007451	rs289714	G	A	5241.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr16	57015463	rs7195984	G	A	5922.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr16	57016092	rs5882	G	A	3854.77	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:167,188:0.53:355
chr16	57017474	rs289741	G	A	3772.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:86,151:0.64:237
chr16	57017762	rs289742	C	G	666.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:16,26:0.62:42
chr16	57056064	rs4784750	G	T	6412.77	.	AC=1;AF=0.500;AN=2;DB;DP=723;set=Intersection	GT:AD:AF:DP	0/1:389,324:0.45:713
chr16	57056295	rs149634155	AGGAGGCTGT	A	1880.73	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:70,54:0.44:124
chr16	57057619	rs1684575	G	T	5196.77	.	AC=1;AF=0.500;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	0/1:186,241:0.56:427
chr16	57057654	rs1672865	A	G	6697.77	.	AC=1;AF=0.500;AN=2;DB;DP=562;MQ=60.02;set=Intersection	GT:AD:AF:DP	0/1:248,314:0.56:562
chr16	57057679	rs12445252	C	T	4766.77	.	AC=1;AF=0.500;AN=2;DB;DP=610;MQ=60.02;set=Intersection	GT:AD:AF:DP	0/1:347,259:0.43:606
chr16	57059427	rs74439742	C	T	4763.77	.	AC=1;AF=0.500;AN=2;DB;DP=504;set=Intersection	GT:AD:AF:DP	0/1:255,238:0.48:493
chr16	57060097	rs61738710	C	T	8650.77	.	AC=1;AF=0.500;AN=2;DB;DP=1073;set=Intersection	GT:AD:AF:DP	0/1:623,435:0.41:1058
chr16	57062177	rs1684576	T	A	6287.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.296;ClippingRankSum=0.000;DB;DP=588;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.71;ReadPosRankSum=1.081;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:287,300:0.51:587
chr16	57065121	rs16965220	C	A	541.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:22,22:0.50:44
chr16	57065199	rs72780004	G	A	1580.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:66,74:0.53:140
chr16	57067595	rs58124158	A	T	2633.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:88,124:0.58:212
chr16	57068048	rs4784753	C	T	2538.77	.	AC=1;AF=0.500;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	0/1:268,138:0.34:406
chr16	57071113	rs1684579	TA	CG	8163.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr16	57071232	rs1684580	C	G	14055.77	.	AC=2;AF=1.00;AN=2;DB;DP=548;set=Intersection	GT:AD:AF:DP	1/1:0,545:1.00:545
chr16	57071335	rs1651670	G	A	6175.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr16	57071375	rs1672866	T	C	2999.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr16	57073683	rs864750	G	C	13275.77	.	AC=2;AF=1.00;AN=2;DB;DP=491;set=Intersection	GT:AD:AF:DP	1/1:0,489:1.00:489
chr16	57074451	rs289726	T	C	5281.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr16	57075781	rs289727	C	T	3439.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr16	57076115	rs158482	T	G	1451.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr16	57089130	rs1167512	C	A	16072.77	.	AC=2;AF=1.00;AN=2;DB;DP=572;set=Intersection	GT:AD:AF:DP	1/1:0,563:1.00:563
chr16	57093472	rs146644349	G	A	1631.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:140,88:0.39:228
chr16	57095775	rs3751710	C	T	3457.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr16	57099295	rs75662143	G	A	4495.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr16	57100493	rs141673616	G	A	3843.77	.	AC=1;AF=0.500;AN=2;DB;DP=505;set=Intersection	GT:AD:AF:DP	0/1:300,202:0.40:502
chr16	57110635	rs10500405	C	T	6663.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr16	57111825	rs27392	T	C	20940.77	.	AC=2;AF=1.00;AN=2;DB;DP=765;set=Intersection	GT:AD:AF:DP	1/1:0,764:1.00:764
chr16	57113229	rs42221	A	G	6949.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr16	57114924	rs154045	A	G	2770.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr16	57114982	rs154044	C	T	5740.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr16	57115274	rs154043	T	C	2412.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr16	57116287	rs27195	A	G	10839.77	.	AC=2;AF=1.00;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	1/1:0,396:1.00:396
chr16	57116514	rs27194	T	A	2354.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr16	57144920	rs8053682	TG	AC	4192.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;JOINED;set=Intersection	GT:AD:AF:DP	0/1:90,110:0.55:200
chr16	57155457	rs4783976	T	C	311.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:19,13:0.41:32
chr16	57157206	rs2305696	C	T	2253.77	.	AC=1;AF=0.500;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	0/1:240,121:0.34:361
chr16	57159248	rs4784771	C	T	3611.77	.	AC=1;AF=0.500;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	0/1:265,188:0.42:453
chr16	57159402	rs4784772	A	G	929.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:52,39:0.43:91
chr16	57171233	rs2305693	C	G	19423.77	.	AC=2;AF=1.00;AN=2;DB;DP=712;set=Intersection	GT:AD:AF:DP	1/1:0,695:1.00:695
chr16	57197745	rs62037356	G	T	11626.77	.	AC=2;AF=1.00;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	1/1:1,419:1.00:420
chr16	57249981	rs11391063	A	AT	4496.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.744;ClippingRankSum=0.000;DB;DP=689;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.159;QD=7.22;ReadPosRankSum=-0.220;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:265,358:0.57:623
chr16	57255363	rs7206038	T	C	4664.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr16	57261146	rs11643790	A	C	3903.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr16	57272961	rs3217258	ACT	A	1382.73	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:43,43:0.50:86
chr16	57392733	rs4359426	A	C	13742.77	.	AC=2;AF=1.00;AN=2;DB;DP=511;set=Intersection	GT:AD:AF:DP	1/1:0,507:1.00:507
chr16	57394291	rs201942553	GC	G	4510.73	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:92,111:0.55:203
chr16	57394295	rs200323853	AGGGTG	A	4554.73	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:106,119:0.53:225
chr16	57481305	rs178602	T	C	4603.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr16	57486613	rs686402	C	T	915.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr16	57494178	rs223868	T	C	3089.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr16	57495026	rs223870	T	C	1807.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr16	57496494	rs178601	A	G	705.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr16	57499841	rs223839	A	G	3805.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr16	57499902	rs4937	T	C	4597.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr16	57503213	rs601194	C	T	17589.77	.	AC=2;AF=1.00;AN=2;DB;DP=665;set=Intersection	GT:AD:AF:DP	1/1:0,660:1.00:660
chr16	57503773	rs223874	G	A	6966.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr16	57507777	rs11458669	T	TC	2269.73	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr16	57508960	rs477025	T	C	4822.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.730;ClippingRankSum=0.000;DB;DP=217;ExcessHet=3.0103;FS=4.265;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.79;ReadPosRankSum=-1.695;SOR=2.734;set=HC	GT:AD:AF:DP	1/1:2,185:0.99:187
chr16	57509164	rs223877	A	G	5304.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr16	57509184	rs147240098	G	A	1781.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:64,85:0.57:149
chr16	57509956	rs2074545	G	C	4197.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr16	57550331	rs74901418	C	T	3649.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.703;ClippingRankSum=0.000;DB;DP=472;ExcessHet=3.0103;FS=0.557;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.000;QD=7.82;ReadPosRankSum=2.761;SOR=0.794;set=HC	GT:AD:AF:DP	0/1:282,185:0.40:467
chr16	57551966	rs28649020	A	T	2347.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:105,91:0.46:196
chr16	57552088	rs28756858	T	C	8482.77	.	AC=1;AF=0.500;AN=2;DB;DP=1181;set=Intersection	GT:AD:AF:DP	0/1:717,456:0.39:1173
chr16	57554851	.	CA	C	229.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.199;ClippingRankSum=0.000;DP=60;ExcessHet=3.0103;FS=7.971;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.69;ReadPosRankSum=0.966;SOR=0.123;set=HC	GT:AD:AF:DP	0/1:25,24:0.49:49
chr16	57555076	rs28446687	C	T	1967.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:114,100:0.47:214
chr16	57562423	rs8045906	T	C	2942.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.176;ClippingRankSum=0.000;DB;DP=406;ExcessHet=3.0103;FS=1.643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.36;ReadPosRankSum=1.990;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:234,166:0.41:400
chr16	57562804	rs12935069	G	A	16169.77	.	AC=2;AF=1.00;AN=2;DB;DP=640;set=Intersection	GT:AD:AF:DP	1/1:0,636:1.00:636
chr16	57563111	rs4784815	A	G	424.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:6,20:0.77:26
chr16	57625470	rs11646739	C	T	2542.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr16	57687314	rs2305307	T	C	2279.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:147,118:0.45:265
chr16	57689230	rs200184349	G	GGT	783.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.226;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.36;ReadPosRankSum=1.772;SOR=0.830;set=HC	GT:AD:AF:DP	0/1:40,29:0.42:69
chr16	57689385	rs1801257	C	G	2380.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:166,115:0.41:281
chr16	57689883	rs1376041	T	C	2510.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:139,118:0.46:257
chr16	57690606	rs11866912	C	A	2609.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:159,119:0.43:278
chr16	57691265	rs2305309	C	A	3182.77	.	AC=1;AF=0.500;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	0/1:187,157:0.46:344
chr16	57693247	rs60907901	G	A	2058.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:118,96:0.45:214
chr16	57697532	rs10852554	T	G	2449.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:180,124:0.41:304
chr16	57697568	rs10852555	C	A	1504.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:111,78:0.41:189
chr16	57702473	rs7205731	T	C	485.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:11,18:0.62:29
chr16	57708474	.	T	C	3547.77	.	AC=1;AF=0.500;AN=2;DP=337;set=Intersection	GT:AD:AF:DP	0/1:149,172:0.54:321
chr16	57710093	rs12596635	C	G	5257.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr16	57713250	rs4238795	C	T	5824.77	.	AC=1;AF=0.500;AN=2;DB;DP=517;set=Intersection	GT:AD:AF:DP	0/1:234,274:0.54:508
chr16	57713534	rs9925766	A	G	2913.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:115,135:0.54:250
chr16	57713679	rs9935751	C	A	26314.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.343;ClippingRankSum=0.000;DB;DP=1270;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.75;ReadPosRankSum=2.248;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:588,680:0.54:1268
chr16	57713685	rs9925879	A	C	26095.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.512;ClippingRankSum=0.000;DB;DP=1267;ExcessHet=3.0103;FS=0.521;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.63;ReadPosRankSum=2.925;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:591,674:0.53:1265
chr16	57723752	rs9939524	A	G	8021.77	.	AC=1;AF=0.500;AN=2;DB;DP=700;set=Intersection	GT:AD:AF:DP	0/1:326,370:0.53:696
chr16	57724078	rs9929288	C	T	1369.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:62,59:0.49:121
chr16	57724800	rs113402969	AAT	A	270.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:18,9:0.33:27
chr16	57724932	rs201650396	TA	T	1974.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.687;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=0.856;QD=20.79;ReadPosRankSum=-0.072;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:39,56:0.59:95
chr16	57724941	rs77948765	A	G	909.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.125;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=-0.959;QD=9.28;ReadPosRankSum=0.996;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:50,48:0.49:98
chr16	57735900	rs7196016	G	C	12933.77	.	AC=1;AF=0.500;AN=2;DB;DP=1056;set=Intersection	GT:AD:AF:DP	0/1:437,595:0.58:1032
chr16	57741346	rs12933056	C	T	2155.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:67,88:0.57:155
chr16	57741612	rs2122486	G	C	6672.77	.	AC=1;AF=0.500;AN=2;DB;DP=509;set=Intersection	GT:AD:AF:DP	0/1:188,306:0.62:494
chr16	57756643	rs3809611	C	T	5911.77	.	AC=1;AF=0.500;AN=2;DB;DP=520;set=Intersection	GT:AD:AF:DP	0/1:240,277:0.54:517
chr16	57762401	rs2923147	T	C	3245.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:127,158:0.55:285
chr16	57771126	rs1061546	G	T	1386.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:91,68:0.43:159
chr16	57771337	rs58845971	A	G	830.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:60,39:0.39:99
chr16	57778488	rs2967152	A	G	9486.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:0,338:1.00:338
chr16	57778550	rs2967153	C	G	4807.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr16	57786517	rs2965797	C	T	12062.77	.	AC=2;AF=1.00;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	1/1:0,439:1.00:439
chr16	57786711	rs2965798	C	T	8015.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr16	57794888	rs2965799	A	T	16921.77	.	AC=2;AF=1.00;AN=2;DB;DP=627;set=Intersection	GT:AD:AF:DP	1/1:2,617:1.00:619
chr16	57795394	rs2967172	G	A	25881.77	.	AC=2;AF=1.00;AN=2;DB;DP=969;set=Intersection	GT:AD:AF:DP	1/1:0,962:1.00:962
chr16	57797913	rs11649013	C	T	19720.77	.	AC=2;AF=1.00;AN=2;DB;DP=726;set=Intersection	GT:AD:AF:DP	1/1:0,711:1.00:711
chr16	57803911	rs3803590	A	G	12240.77	.	AC=2;AF=1.00;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	1/1:0,438:1.00:438
chr16	57805048	rs2967166	A	G	1716.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr16	57805078	rs2965790	C	T	2626.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr16	57805176	rs2967165	A	G	6855.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr16	57806030	rs2965789	A	G	1179.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr16	57808992	rs56302643	C	T	4390.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr16	57822653	rs58082302	G	A	19258.77	.	AC=2;AF=1.00;AN=2;DB;DP=758;set=Intersection	GT:AD:AF:DP	1/1:0,753:1.00:753
chr16	57850806	rs41484850	A	G	4132.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr16	57921752	rs11076207	A	G	1346.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:84,68:0.45:152
chr16	57931205	.	CA	C	390.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.684;ClippingRankSum=0.000;DP=80;ExcessHet=3.0103;FS=1.281;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.83;ReadPosRankSum=0.394;SOR=0.968;set=HC	GT:AD:AF:DP	0/1:26,41:0.61:67
chr16	57937788	rs2303785	T	C	3682.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:150,176:0.54:326
chr16	57937856	rs413562	G	T	2902.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:123,136:0.53:259
chr16	57937895	rs437920	G	A	2004.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:88,100:0.53:188
chr16	57946973	rs434961	A	G	2881.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:117,125:0.52:242
chr16	57949251	rs483053	G	A	2908.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:113,142:0.56:255
chr16	57950057	rs376270	G	A	5030.77	.	AC=1;AF=0.500;AN=2;DB;DP=476;set=Intersection	GT:AD:AF:DP	0/1:230,241:0.51:471
chr16	57950178	rs440565	G	C	5408.77	.	AC=1;AF=0.500;AN=2;DB;DP=498;set=Intersection	GT:AD:AF:DP	0/1:248,246:0.50:494
chr16	57951421	rs691490	G	A	552.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:34,24:0.41:58
chr16	57952870	rs489106	A	G	1934.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:55,75:0.58:130
chr16	57954268	rs166000	A	G	4505.77	.	AC=1;AF=0.500;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	0/1:185,213:0.54:398
chr16	57957138	rs247065	G	C	468.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:22,24:0.52:46
chr16	57973989	rs2303779	G	A	4874.77	.	AC=1;AF=0.500;AN=2;DB;DP=540;set=Intersection	GT:AD:AF:DP	0/1:293,237:0.45:530
chr16	57974240	rs2303778	G	A	4347.77	.	AC=1;AF=0.500;AN=2;DB;DP=482;set=Intersection	GT:AD:AF:DP	0/1:274,204:0.43:478
chr16	57984483	rs152143	G	A	2988.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr16	57991123	rs34759686	GC	G	4694.73	.	AC=2;AF=1.00;AN=2;DB;DP=156;MQ=60.07;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr16	57991317	rs503686	C	T	5813.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr16	57992119	rs399634	T	A	4097.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr16	57996932	rs17821448	G	A	10631.77	.	AC=2;AF=1.00;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	1/1:0,396:1.00:396
chr16	57996960	rs13336595	C	T	9508.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	1/1:0,350:1.00:350
chr16	57998345	rs3859043	C	T	5726.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr16	58019065	rs35768173	TG	T	5729.73	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr16	58019070	rs2304485	G	T	5885.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr16	58019253	rs2304486	G	C	12379.77	.	AC=2;AF=1.00;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	1/1:0,446:1.00:446
chr16	58019396	rs9934227	G	A	28979.77	.	AC=2;AF=1.00;AN=2;DB;DP=1118;set=Intersection	GT:AD:AF:DP	1/1:0,1110:1.00:1110
chr16	58021395	rs2241771	A	C	13680.77	.	AC=2;AF=1.00;AN=2;DB;DP=533;set=Intersection	GT:AD:AF:DP	1/1:0,521:1.00:521
chr16	58030401	rs3743555	T	C	7193.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr16	58030634	rs3743556	C	T	23928.77	.	AC=2;AF=1.00;AN=2;DB;DP=902;set=Intersection	GT:AD:AF:DP	1/1:0,889:1.00:889
chr16	58032026	rs56347618	G	A	2723.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:143,125:0.47:268
chr16	58035652	rs12599089	A	T	208.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:22,16:0.42:38
chr16	58036347	rs3743560	G	A	4031.77	.	AC=1;AF=0.500;AN=2;DB;DP=474;set=Intersection	GT:AD:AF:DP	0/1:267,200:0.43:467
chr16	58051178	rs4784022	C	T	617.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:36,26:0.42:62
chr16	58053161	rs3743562	C	T	355.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:37,19:0.34:56
chr16	58200464	rs112507755	ACT	A	841.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.242;ClippingRankSum=0.000;DB;DP=451;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.01;ReadPosRankSum=0.175;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:360,59:0.14:419
chr16	58296542	rs9923694	T	C	3006.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.58;SOR=4.143;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr16	58296545	rs3815802	G	A	2941.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.26;SOR=4.310;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr16	58313566	rs6499945	T	G	5368.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr16	58313578	rs71155257	CT	C	2197.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.381;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=1.080;MLEAC=2;MLEAF=1.000;MQ=60.15;MQRankSum=0.506;QD=15.16;ReadPosRankSum=0.510;SOR=0.900;set=HC	GT:AD:AF:DP	1/1:14,131:0.90:145
chr16	58318604	rs3815803	T	C	10547.77	.	AC=2;AF=1.00;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	1/1:0,397:1.00:397
chr16	58318721	rs11313996	AT	A	1089.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.686;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.45;ReadPosRankSum=0.334;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:8,73:0.90:81
chr16	58320211	rs4784916	T	C	2183.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr16	58327646	rs2288012	A	G	8569.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr16	58429176	.	C	CT	73.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.359;ClippingRankSum=0.000;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.84;ReadPosRankSum=0.470;SOR=0.458;set=HC	GT:AD:AF:DP	0/1:29,11:0.28:40
chr16	58429243	rs138660659	T	A	167.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.97;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr16	58528736	rs371388096	T	TA,TAA	2416.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.762;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=1.494;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.26;MQRankSum=0.344;QD=17.51;ReadPosRankSum=-0.999;SOR=1.142;set=HC	GT:AD:AF:DP	1/2:16,40,82:0.29,0.59:138
chr16	58533932	rs982697	A	C	1587.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr16	58538662	rs9928398	C	T	3187.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr16	58540037	.	C	CGTGTGTGTGTGTGTGTGTGTGT	133.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.342;ClippingRankSum=0.000;DP=74;ExcessHet=3.0103;FS=7.841;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.16;ReadPosRankSum=2.918;SOR=2.820;set=HC	GT:AD:AF:DP	0/1:56,6:0.10:62
chr16	58540060	rs72499708	GTC	G	344.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.970;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=3.885;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.15;ReadPosRankSum=0.995;SOR=0.332;set=HC	GT:AD:AF:DP	0/1:48,19:0.28:67
chr16	58540062	rs2550426	C	G	1002.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.413;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=3.610;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.97;ReadPosRankSum=-0.818;SOR=1.247;set=HC	GT:AD:AF:DP	0/1:27,40:0.60:67
chr16	58544640	rs12597973	C	G	5997.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.873;ClippingRankSum=0.000;DB;DP=497;ExcessHet=3.0103;FS=1.213;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.39;ReadPosRankSum=1.881;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:209,275:0.57:484
chr16	58545426	rs42945	A	G	11266.77	.	AC=2;AF=1.00;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	1/1:0,436:1.00:436
chr16	58549932	rs4784046	T	C	3735.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr16	58550052	.	G	GCGGGGCGGTT,GCGGGGCGGGGCGGGGCGGGGCGGGGCGGTT	1126.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=65.85;QD=125.19;SOR=4.615;set=HC	GT:AD:AF:DP	1/2:0,5,4:0.56,0.44:9
chr16	58550300	rs77328516	A	AAC	22883.73	.	AC=2;AF=1.00;AN=2;DB;DP=513;set=Intersection	GT:AD:AF:DP	1/1:1,507:1.00:508
chr16	58550484	rs3743567	G	A	9210.77	.	AC=1;AF=0.500;AN=2;DB;DP=717;set=Intersection	GT:AD:AF:DP	0/1:291,423:0.59:714
chr16	58552921	rs3607	G	A	9422.77	.	AC=2;AF=1.00;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	1/1:0,349:1.00:349
chr16	58557342	rs11644694	G	A	4018.77	.	AC=1;AF=0.500;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	0/1:213,201:0.49:414
chr16	58561954	rs37057	T	C	2556.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr16	58566304	rs37060	G	A	6351.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr16	58571185	rs2244453	C	T	6898.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.12;SOR=1.843;set=HC	GT:AD:AF:DP	1/1:0,160:1.00:160
chr16	58571189	rs2243463	T	C	6728.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.77;SOR=1.957;set=HC	GT:AD:AF:DP	1/1:0,147:1.00:147
chr16	58573901	rs246194	G	A	1442.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr16	58573946	rs246195	C	T	599.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr16	58577315	rs5817153	GA	G	2758.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.365;ClippingRankSum=0.000;DB;DP=237;ExcessHet=3.0103;FS=2.225;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=0.707;QD=11.89;ReadPosRankSum=2.280;SOR=0.493;set=HC	GT:AD:AF:DP	0/1:47,185:0.80:232
chr16	58577421	rs41260	C	T	8119.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr16	58579158	rs42947	A	C	2257.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr16	58579274	rs246258	C	T	5437.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr16	58580519	rs246197	A	C	2784.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:136,133:0.49:269
chr16	58580530	rs173475	T	C	8543.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr16	58589205	rs149793943	T	G	6876.77	.	AC=1;AF=0.500;AN=2;DB;DP=566;set=Intersection	GT:AD:AF:DP	0/1:246,315:0.56:561
chr16	58612662	rs112226008	T	C	3271.77	.	AC=1;AF=0.500;AN=2;DB;DP=453;set=Intersection	GT:AD:AF:DP	0/1:278,171:0.38:449
chr16	58632954	.	C	CA	44.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.350;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=5.119;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=1.583;QD=1.72;ReadPosRankSum=-0.514;SOR=0.043;set=HC	GT:AD:AF:DP	0/1:18,8:0.31:26
chr16	58703878	.	C	CA	403.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.145;ClippingRankSum=0.000;DP=279;ExcessHet=3.0103;FS=0.653;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.836;QD=1.69;ReadPosRankSum=0.591;SOR=0.584;set=HC	GT:AD:AF:DP	0/1:181,58:0.24:239
chr16	58703966	rs9923128	A	G	14408.77	.	AC=2;AF=1.00;AN=2;DB;DP=574;set=Intersection	GT:AD:AF:DP	1/1:4,567:0.99:571
chr16	58709824	rs34833577	TG	T	7444.73	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:8,278:0.97:286
chr16	58712130	rs2280398	C	T	2304.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr16	58712433	.	T	A	1364.77	.	AC=1;AF=0.500;AN=2;DP=105;set=Intersection	GT:AD:AF:DP	0/1:44,60:0.58:104
chr16	58713621	rs11641633	G	A	12585.77	.	AC=2;AF=1.00;AN=2;DB;DP=475;set=Intersection	GT:AD:AF:DP	1/1:7,465:0.99:472
chr16	60393311	.	G	A	2378.77	.	AC=1;AF=0.500;AN=2;DP=210;set=Intersection	GT:AD:AF:DP	0/1:95,110:0.54:205
chr16	60393312	rs114596708	G	A	1924.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:111,93:0.46:204
chr16	60393404	rs2407146	T	A	720.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:62,35:0.36:97
chr16	61681788	.	G	C	4876.77	.	AC=1;AF=0.500;AN=2;DP=411;set=Intersection	GT:AD:AF:DP	0/1:182,223:0.55:405
chr16	61761293	rs140846478	T	TA	574.73	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:29,30:0.51:59
chr16	64982033	rs2280394	C	T	1831.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:148,94:0.39:242
chr16	65005462	rs12597529	G	A	5265.77	.	AC=1;AF=0.500;AN=2;DB;DP=509;set=Intersection	GT:AD:AF:DP	0/1:250,253:0.50:503
chr16	65016087	rs35213	A	C	2396.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:184,126:0.41:310
chr16	65016285	rs35212	C	A	1151.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:93,55:0.37:148
chr16	65022114	rs28216	C	T	10626.77	.	AC=1;AF=0.500;AN=2;DB;DP=906;set=Intersection	GT:AD:AF:DP	0/1:398,491:0.55:889
chr16	65025658	rs35196	T	C	5179.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr16	65025849	rs35194	A	G	6752.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr16	65397360	rs9939648	G	A	495.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:17,20:0.54:37
chr16	65839554	.	G	A	2726.77	.	AC=1;AF=0.500;AN=2;DP=219;set=Intersection	GT:AD:AF:DP	0/1:85,132:0.61:217
chr16	66422318	rs112140637	A	G	2367.77	.	AC=1;AF=0.500;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	0/1:200,124:0.38:324
chr16	66425862	rs111289746	C	A	301.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:33,14:0.30:47
chr16	66432303	rs113303884	GACCACCCC	G	3530.73	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:148,96:0.39:244
chr16	66432423	rs1049970	TC	CT	7659.77	.	AC=1;AF=0.500;AN=2;DB;DP=526;JOINED;set=Intersection	GT:AD:AF:DP	0/1:316,208:0.40:524
chr16	66434571	rs6499082	G	C	1490.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:73,60:0.45:133
chr16	66503441	.	G	A	3472.77	.	AC=1;AF=0.500;AN=2;DP=411;set=Intersection	GT:AD:AF:DP	0/1:233,172:0.42:405
chr16	66599710	rs2232727	G	A	84.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:12,5:0.29:17
chr16	66601057	rs377761335	CT	C	577.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.435;ClippingRankSum=0.000;DB;DP=374;ExcessHet=3.0103;FS=2.198;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.990;QD=2.29;ReadPosRankSum=-1.074;SOR=0.925;set=HC	GT:AD:AF:DP	0/1:175,77:0.31:252
chr16	66646591	rs3743719	C	T	8193.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr16	66757487	.	G	GT	840.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.930;ClippingRankSum=0.000;DP=386;ExcessHet=3.0103;FS=2.964;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=2.286;QD=2.47;ReadPosRankSum=0.122;SOR=0.524;set=HC	GT:AD:AF:DP	0/1:238,102:0.30:340
chr16	66757728	rs77481802	GA	G	217.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.849;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=2.863;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.826;QD=1.20;ReadPosRankSum=1.834;SOR=1.090;set=HC	GT:AD:AF:DP	0/1:135,46:0.25:181
chr16	66852579	.	TA	T	107.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.435;ClippingRankSum=0.000;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.33;ReadPosRankSum=1.529;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:62,19:0.23:81
chr16	66918076	.	C	CAA	62.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.304;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=5.863;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=1.775;QD=2.32;ReadPosRankSum=-0.754;SOR=0.027;set=HC	GT:AD:AF:DP	0/1:20,7:0.26:27
chr16	66919667	rs145548142	G	A	4895.77	.	AC=1;AF=0.500;AN=2;DB;DP=550;set=Intersection	GT:AD:AF:DP	0/1:299,240:0.45:539
chr16	66946894	rs112552212	C	CGT	2300.73	.	AC=1;AF=0.500;AN=2;DB;DP=669;set=Intersection	GT:AD:AF:DP	0/1:231,113:0.33:344
chr16	67116032	rs36017652	G	GA	117.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.340;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=1.156;QD=2.45;ReadPosRankSum=-0.932;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:33,15:0.31:48
chr16	67165083	rs71801416	GT	G	48.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.971;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=4.193;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.22;ReadPosRankSum=0.431;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:12,10:0.45:22
chr16	67197776	rs5817616	C	CG	3243.73	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:16,127:0.89:143
chr16	67203835	.	G	GT	48.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.022;ClippingRankSum=0.000;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.80;ReadPosRankSum=2.814;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:48,13:0.21:61
chr16	67208109	rs2233457	G	C	6664.77	.	AC=1;AF=0.500;AN=2;DB;DP=780;set=Intersection	GT:AD:AF:DP	0/1:438,333:0.43:771
chr16	67221050	rs9924876	A	G	13445.77	.	AC=2;AF=1.00;AN=2;DB;DP=483;set=Intersection	GT:AD:AF:DP	1/1:0,468:1.00:468
chr16	67221389	rs141845668	T	C	6305.77	.	AC=1;AF=0.500;AN=2;DB;DP=607;set=Intersection	GT:AD:AF:DP	0/1:296,298:0.50:594
chr16	67229793	.	ACAG	A	364.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.211;ClippingRankSum=0.000;DP=766;ExcessHet=3.0103;FS=0.788;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=3.605;QD=0.68;ReadPosRankSum=-0.719;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:466,72:0.13:538
chr16	67235256	rs200085882	A	G	4274.77	.	AC=1;AF=0.500;AN=2;DB;DP=541;set=Intersection	GT:AD:AF:DP	0/1:295,226:0.43:521
chr16	67286352	.	C	CA	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.319;ClippingRankSum=0.000;DP=51;ExcessHet=3.0103;FS=6.331;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.76;ReadPosRankSum=0.409;SOR=2.062;set=HC	GT:AD:AF:DP	0/1:36,11:0.23:47
chr16	67315128	.	C	CT	401.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.187;ClippingRankSum=0.000;DP=274;ExcessHet=3.0103;FS=0.765;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=0.000;QD=2.09;ReadPosRankSum=0.385;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:141,51:0.27:192
chr16	67319470	rs142110187	C	T	4026.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:130,171:0.57:301
chr16	67320920	rs785029	C	T	10030.77	.	AC=1;AF=0.500;AN=2;DB;DP=1227;set=Intersection	GT:AD:AF:DP	0/1:699,511:0.42:1210
chr16	67324957	rs27860	T	C	5290.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr16	67384060	.	CT	C	159.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.013;ClippingRankSum=0.000;DP=150;ExcessHet=3.0103;FS=2.083;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.12;ReadPosRankSum=0.957;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:105,38:0.27:143
chr16	67472376	.	GCA	G	54.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.548;ClippingRankSum=0.000;DP=183;ExcessHet=3.0103;FS=3.922;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=0.000;QD=0.32;ReadPosRankSum=1.698;SOR=1.351;set=HC	GT:AD:AF:DP	0/1:154,19:0.11:173
chr16	67660355	.	CA	C	63.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.103;ClippingRankSum=0.000;DP=86;ExcessHet=3.0103;FS=9.761;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.03;ReadPosRankSum=0.898;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:42,20:0.32:62
chr16	67670472	.	G	GTA	1147.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.697;ClippingRankSum=0.000;DP=131;ExcessHet=3.0103;FS=0.830;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.134;QD=9.41;ReadPosRankSum=0.282;SOR=0.856;set=HC	GT:AD:AF:DP	0/1:73,49:0.40:122
chr16	67691668	rs6979	A	G	4163.77	.	AC=1;AF=0.500;AN=2;DB;DP=474;set=Intersection	GT:AD:AF:DP	0/1:274,195:0.42:469
chr16	67805993	rs35741053	C	CA	394.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.908;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=7.860;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.37;ReadPosRankSum=1.894;SOR=1.615;set=HC	GT:AD:AF:DP	0/1:72,45:0.38:117
chr16	67863451	rs3743733	T	C	1038.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:72,52:0.42:124
chr16	67876823	rs377516180	ACAG	A	1176.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.922;ClippingRankSum=0.000;DB;DP=764;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.510;QD=1.83;ReadPosRankSum=2.835;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:571,73:0.11:644
chr16	67997972	.	CGG	C	3359.73	.	AC=1;AF=0.500;AN=2;DP=238;set=Intersection	GT:AD:AF:DP	0/1:108,97:0.47:205
chr16	68025801	rs255051	G	C	10981.77	.	AC=2;AF=1.00;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	1/1:0,408:1.00:408
chr16	68057096	rs237831	T	C	2988.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:186,142:0.43:328
chr16	68100461	rs2285912	C	T	3188.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:200,152:0.43:352
chr16	68260122	rs74625559	G	A	283.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:29,16:0.36:45
chr16	68325665	.	GGT	G	625.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.647;ClippingRankSum=0.000;DP=262;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=0.000;QD=5.26;ReadPosRankSum=0.206;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:79,40:0.34:119
chr16	68344696	rs3803650	C	T	12118.77	.	AC=1;AF=0.500;AN=2;DB;DP=1133;set=Intersection	GT:AD:AF:DP	0/1:550,565:0.51:1115
chr16	68344945	rs3743741	G	C	3861.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:130,161:0.55:291
chr16	68345036	rs3743742	G	T	734.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:28,29:0.51:57
chr16	68356187	rs7203220	A	C	351.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:11,19:0.63:30
chr16	68356419	rs4783618	A	G	229.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:7,11:0.61:18
chr16	68363181	rs1111571	G	A	811.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:69,40:0.37:109
chr16	68382447	rs2863975	T	C	692.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:28,33:0.54:61
chr16	68387373	rs1562479	C	T	4344.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:131,196:0.60:327
chr16	68387496	rs1868159	A	C	3008.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:100,134:0.57:234
chr16	68391189	rs7192234	C	G	5108.77	.	AC=1;AF=0.500;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	0/1:152,228:0.60:380
chr16	68395094	rs2279539	G	A	3468.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:106,159:0.60:265
chr16	68397530	rs3826167	T	G	1659.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:56,74:0.57:130
chr16	68397909	rs1465470	A	G	1962.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.970;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.22;ReadPosRankSum=-2.106;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:57,57:0.50:114
chr16	68397916	rs1465469	T	G	1766.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.196;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.60;ReadPosRankSum=-1.126;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:51,44:0.46:95
chr16	68398924	rs1868158	C	T	7004.77	.	AC=1;AF=0.500;AN=2;DB;DP=630;set=Intersection	GT:AD:AF:DP	0/1:288,331:0.53:619
chr16	68573945	rs1182968	C	T	4869.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr16	68591156	rs1728784	T	A	3816.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr16	68591230	rs1728785	A	C	7487.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr16	68591350	rs1645929	A	G	1098.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:23,48:0.68:71
chr16	68591386	rs11859322	T	C	326.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:25,16:0.39:41
chr16	68598007	rs1177648	A	G	11438.77	.	AC=1;AF=0.500;AN=2;DB;DP=941;set=Intersection	GT:AD:AF:DP	0/1:418,509:0.55:927
chr16	68598744	rs34979386	A	ATTT	343.75	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.851;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.44;ReadPosRankSum=0.099;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:2,11:0.85:13
chr16	68679770	rs2236393	G	A	365.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:7,15:0.68:22
chr16	68710165	rs3118229	T	C	3282.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr16	68711999	rs1952048	A	G	5971.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:3,217:0.99:220
chr16	68712217	rs2296410	T	C	5071.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr16	68713730	rs2296409	G	A	16072.77	.	AC=2;AF=1.00;AN=2;DB;DP=631;set=Intersection	GT:AD:AF:DP	1/1:0,609:1.00:609
chr16	68713823	rs2296408	C	A	20541.77	.	AC=2;AF=1.00;AN=2;DB;DP=773;set=Intersection	GT:AD:AF:DP	1/1:4,757:0.99:761
chr16	68716066	rs1886698	G	A	239.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:24,12:0.33:36
chr16	68716179	rs1886697	T	C	7092.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:2,265:0.99:267
chr16	68718367	rs4783661	T	C	4478.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:1,148:0.99:149
chr16	68718750	rs2281850	A	G	7382.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr16	68721340	rs2296406	G	A	3768.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr16	68721470	rs2296405	T	C	16607.77	.	AC=2;AF=1.00;AN=2;DB;DP=618;set=Intersection	GT:AD:AF:DP	1/1:0,616:1.00:616
chr16	68721533	rs1126933	G	C	4214.77	.	AC=1;AF=0.500;AN=2;DB;DP=622;set=Intersection	GT:AD:AF:DP	0/1:389,229:0.37:618
chr16	68725783	rs2274239	G	A	5136.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr16	68729112	rs8060790	A	G	8389.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:1,323:1.00:324
chr16	68729785	rs17715450	C	A	27753.77	.	AC=2;AF=1.00;AN=2;DB;DP=1042;set=Intersection	GT:AD:AF:DP	1/1:1,1033:1.00:1034
chr16	68771372	rs3743674	C	T	5990.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr16	68771418	rs147838237	C	CGCCCCAGCCCCGT	8084.73	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr16	68771547	rs3743675	G	C	1423.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.64;QD=27.92;SOR=2.004;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr16	68863752	rs33965115	G	A	3916.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr16	68943242	rs72787286	C	T	2291.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:166,111:0.40:277
chr16	68952939	rs3833052	A	AT	1160.73	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:60,77:0.56:137
chr16	69007846	rs3743677	C	T	2547.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:83,110:0.57:193
chr16	69166366	.	G	GC	1128.73	.	AC=2;AF=1.00;AN=2;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr16	69170568	rs3815821	G	A	2463.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr16	69171630	rs3217261	GGT	G	1773.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.41;QD=34.78;SOR=2.540;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr16	69177268	rs2288036	C	T	6496.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:3,240:0.99:243
chr16	69199097	.	C	CA	217.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.994;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=5.411;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.73;ReadPosRankSum=1.171;SOR=0.178;set=HC	GT:AD:AF:DP	0/1:28,18:0.39:46
chr16	69293926	.	C	CT	67.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.565;ClippingRankSum=0.000;DP=368;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.19;ReadPosRankSum=-0.524;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:294,55:0.16:349
chr16	69304048	rs1136042	A	G	12666.77	.	AC=2;AF=1.00;AN=2;DB;DP=500;set=Intersection	GT:AD:AF:DP	1/1:4,491:0.99:495
chr16	69334880	rs34703750	C	CA	138.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.369;ClippingRankSum=0.000;DB;DP=312;ExcessHet=3.0103;FS=4.351;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=0.000;QD=0.54;ReadPosRankSum=-1.839;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:215,43:0.17:258
chr16	69353996	rs147597923	G	A	1049.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:51,46:0.47:97
chr16	69354682	rs17702834	C	T	8954.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:0,332:1.00:332
chr16	69354963	rs1127231	A	G	10019.77	.	AC=2;AF=1.00;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	1/1:0,377:1.00:377
chr16	69355155	rs1127232	G	A	5833.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr16	69355228	.	G	GT	41.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.64;ReadPosRankSum=0.290;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:52,13:0.20:65
chr16	69355229	rs72795270	G	T	1385.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:7,60:0.90:67
chr16	69356612	rs72795271	C	G	4653.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:2,174:0.99:176
chr16	69356694	rs114488427	CA	TG	2950.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr16	69363734	rs2242414	A	G	1082.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr16	69364030	rs3852691	G	A	9709.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:0,348:1.00:348
chr16	69364443	rs8057004	A	G	1345.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr16	69365122	rs181040346	G	C	1987.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr16	69372927	rs3759979	T	C	2711.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr16	69373414	rs11542583	T	C	7959.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr16	69373851	rs28372928	C	T	8498.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:2,307:0.99:309
chr16	69375658	rs8053850	G	A	3489.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr16	69381769	rs16958777	C	T	25382.77	.	AC=2;AF=1.00;AN=2;DB;DP=962;set=Intersection	GT:AD:AF:DP	1/1:2,954:1.00:956
chr16	69390702	.	C	CA	120.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.245;ClippingRankSum=0.000;DP=83;ExcessHet=3.0103;FS=3.758;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=1.434;QD=1.70;ReadPosRankSum=0.217;SOR=0.199;set=HC	GT:AD:AF:DP	0/1:53,18:0.25:71
chr16	69395141	.	G	GA	234.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.525;ClippingRankSum=0.000;DP=104;ExcessHet=3.0103;FS=4.795;MLEAC=1;MLEAF=0.500;MQ=60.42;MQRankSum=2.815;QD=2.45;ReadPosRankSum=-2.424;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:64,32:0.33:96
chr16	69395212	rs34295116	G	A	7875.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr16	69404241	rs12325060	G	A	1952.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr16	69419394	rs34415214	G	A	25706.77	.	AC=2;AF=1.00;AN=2;DB;DP=927;set=Intersection	GT:AD:AF:DP	1/1:0,914:1.00:914
chr16	69492973	rs34120910	A	AT	621.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.693;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=2.428;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.64;ReadPosRankSum=0.300;SOR=1.136;set=HC	GT:AD:AF:DP	0/1:23,49:0.68:72
chr16	69599664	.	C	T	1291.77	.	AC=1;AF=0.500;AN=2;DP=119;set=Intersection	GT:AD:AF:DP	0/1:51,66:0.56:117
chr16	69599803	rs8048032	A	G	1209.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr16	69602247	.	A	ATGTG	183.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.325;ClippingRankSum=-0.000;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.13;ReadPosRankSum=-0.230;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:2,11:0.85:13
chr16	69602249	rs9937747	A	G	561.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.787;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=31.21;ReadPosRankSum=1.182;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:2,16:0.89:18
chr16	69740963	rs189277608	C	T	1161.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:97,65:0.40:162
chr16	69752006	rs34755915	C	T	4462.77	.	AC=1;AF=0.500;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	0/1:183,208:0.53:391
chr16	69752464	rs689452	C	G	1883.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr16	69782855	rs3811348	C	T	3654.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr16	69971446	rs117443900	C	A	8571.77	.	AC=1;AF=0.500;AN=2;DB;DP=708;set=Intersection	GT:AD:AF:DP	0/1:299,399:0.57:698
chr16	70076912	.	G	GA	322.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.160;ClippingRankSum=0.000;DP=190;ExcessHet=3.0103;FS=0.713;MLEAC=1;MLEAF=0.500;MQ=56.10;MQRankSum=-7.044;QD=2.06;ReadPosRankSum=-0.317;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:117,40:0.25:157
chr16	70154480	rs200469748	A	G	1039.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.979;ClippingRankSum=0.000;DB;DP=663;ExcessHet=3.0103;FS=0.669;MLEAC=1;MLEAF=0.500;MQ=57.23;MQRankSum=-23.602;QD=1.59;ReadPosRankSum=-6.774;SOR=0.742;set=HC	GT:AD:AF:DP	0/1:533,122:0.19:655
chr16	70161263	rs2549532	T	C	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=11.859;ClippingRankSum=0.000;DB;DP=655;ExcessHet=3.0103;FS=13.165;MLEAC=1;MLEAF=0.500;MQ=56.08;MQRankSum=-14.516;QD=0.06;ReadPosRankSum=-1.273;SOR=1.890;set=HC	GT:AD:AF:DP	0/1:591,63:0.10:654
chr16	70163691	rs4985506	C	T	5912.77	.	AC=1;AF=0.500;AN=2;DB;DP=1093;set=Intersection	GT:AD:AF:DP	0/1:753,338:0.31:1091
chr16	70163825	rs4985403	G	C	2576.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:183,112:0.38:295
chr16	70164248	rs7206450	T	C	1840.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:114,78:0.41:192
chr16	70164334	rs10852462	A	G	5108.77	.	AC=1;AF=0.500;AN=2;DB;DP=624;set=Intersection	GT:AD:AF:DP	0/1:381,239:0.39:620
chr16	70165793	rs4985507	G	C	2072.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.036;ClippingRankSum=0.000;DB;DP=1486;ExcessHet=3.0103;FS=1.543;MLEAC=1;MLEAF=0.500;MQ=59.03;MQRankSum=2.443;QD=1.41;ReadPosRankSum=0.220;SOR=0.831;set=HC	GT:AD:AF:DP	0/1:1241,234:0.16:1475
chr16	70165914	rs2113175	T	C	3278.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:170,151:0.47:321
chr16	70166225	rs2549550	C	A	2971.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.849;ClippingRankSum=0.000;DB;DP=814;ExcessHet=3.0103;FS=0.643;MLEAC=1;MLEAF=0.500;MQ=59.55;MQRankSum=-6.919;QD=3.77;ReadPosRankSum=-0.032;SOR=0.572;set=HC	GT:AD:AF:DP	0/1:598,191:0.24:789
chr16	70170222	rs59034887	G	T	6192.77	.	AC=1;AF=0.500;AN=2;DB;DP=1172;set=Intersection	GT:AD:AF:DP	0/1:796,371:0.32:1167
chr16	70172773	rs114934918	G	A	1969.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.940;ClippingRankSum=0.000;DB;DP=535;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.35;MQRankSum=-0.742;QD=3.69;ReadPosRankSum=1.294;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:401,133:0.25:534
chr16	70172890	rs142218067	C	T	1368.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.384;ClippingRankSum=0.000;DB;DP=307;ExcessHet=3.0103;FS=1.685;MLEAC=1;MLEAF=0.500;MQ=44.81;MQRankSum=-2.619;QD=4.62;ReadPosRankSum=-1.420;SOR=0.579;set=HC	GT:AD:AF:DP	0/1:219,77:0.26:296
chr16	70176076	rs2549125	G	T	2213.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.719;ClippingRankSum=0.000;DB;DP=453;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.73;MQRankSum=-17.446;QD=5.02;ReadPosRankSum=0.341;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:323,118:0.27:441
chr16	70176321	rs113493832	CT	C	4754.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.133;ClippingRankSum=0.000;DB;DP=1369;ExcessHet=3.0103;FS=0.528;MLEAC=1;MLEAF=0.500;MQ=59.15;MQRankSum=-2.177;QD=4.08;ReadPosRankSum=2.375;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:668,496:0.43:1164
chr16	70176451	rs202169520	C	T	2663.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.822;ClippingRankSum=0.000;DB;DP=877;ExcessHet=3.0103;FS=5.345;MLEAC=1;MLEAF=0.500;MQ=47.10;MQRankSum=-0.232;QD=3.05;ReadPosRankSum=-3.067;SOR=1.188;set=HC	GT:AD:AF:DP	0/1:692,180:0.21:872
chr16	70177618	rs7191901	G	A	756.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.173;ClippingRankSum=0.000;DB;DP=495;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.15;MQRankSum=-12.761;QD=1.53;ReadPosRankSum=3.839;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:412,82:0.17:494
chr16	70177648	rs2303200	G	A	3935.77	.	AC=1;AF=0.500;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	0/1:152,166:0.52:318
chr16	70178401	rs7192962	A	T	97.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.197;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=39.69;MQRankSum=-0.695;QD=4.07;ReadPosRankSum=1.455;SOR=0.127;set=HC	GT:AD:AF:DP	0/1:18,6:0.25:24
chr16	70181537	rs145995386	C	T	268.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.636;ClippingRankSum=0.000;DB;DP=324;ExcessHet=3.0103;FS=5.552;MLEAC=1;MLEAF=0.500;MQ=47.14;MQRankSum=-5.786;QD=0.83;ReadPosRankSum=-0.130;SOR=0.952;set=HC	GT:AD:AF:DP	0/1:275,49:0.15:324
chr16	70182249	rs62050975	C	T	61.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.565;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.07;MQRankSum=-6.061;QD=0.58;ReadPosRankSum=-1.466;SOR=0.391;set=HC	GT:AD:AF:DP	0/1:93,13:0.12:106
chr16	70182325	rs55843501	T	C	112.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=11.848;ClippingRankSum=0.000;DB;DP=432;ExcessHet=3.0103;FS=40.513;MLEAC=1;MLEAF=0.500;MQ=57.81;MQRankSum=-17.111;QD=0.26;ReadPosRankSum=-1.152;SOR=5.422;set=HC	GT:AD:AF:DP	0/1:389,42:0.10:431
chr16	70182375	rs62050977	T	C	3706.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.170;ClippingRankSum=0.000;DB;DP=721;ExcessHet=3.0103;FS=8.553;MLEAC=1;MLEAF=0.500;MQ=57.66;MQRankSum=-8.991;QD=5.16;ReadPosRankSum=-3.592;SOR=1.441;set=HC	GT:AD:AF:DP	0/1:587,131:0.18:718
chr16	70182390	rs62050978	T	G	4241.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.249;ClippingRankSum=0.000;DB;DP=737;ExcessHet=3.0103;FS=7.934;MLEAC=1;MLEAF=0.500;MQ=57.76;MQRankSum=-8.014;QD=5.77;ReadPosRankSum=-1.928;SOR=1.365;set=HC	GT:AD:AF:DP	0/1:581,154:0.21:735
chr16	70182489	rs145754705	ACTTCCCTTCC	A	4285.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.106;ClippingRankSum=0.000;DB;DP=380;ExcessHet=3.0103;FS=1.704;MLEAC=1;MLEAF=0.500;MQ=59.82;MQRankSum=0.000;QD=17.86;ReadPosRankSum=-0.503;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:125,115:0.48:240
chr16	70187164	rs2287979	G	A	3506.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:124,140:0.53:264
chr16	70187270	rs2287980	T	G	3234.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.722;ClippingRankSum=0.000;DB;DP=1215;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.69;ReadPosRankSum=0.924;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:950,252:0.21:1202
chr16	70190401	rs6499302	C	T	2564.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.673;ClippingRankSum=0.000;DB;DP=791;ExcessHet=3.0103;FS=0.621;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.27;ReadPosRankSum=-1.185;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:597,188:0.24:785
chr16	70191029	rs4985509	T	G	9043.77	.	AC=1;AF=0.500;AN=2;DB;DP=985;set=Intersection	GT:AD:AF:DP	0/1:538,432:0.45:970
chr16	70191161	rs11647087	C	T	1258.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:99,61:0.38:160
chr16	70211218	rs149087931	G	A	754.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.791;ClippingRankSum=0.000;DB;DP=288;ExcessHet=3.0103;FS=2.621;MLEAC=1;MLEAF=0.500;MQ=47.48;MQRankSum=-5.041;QD=2.80;ReadPosRankSum=-0.323;SOR=0.496;set=HC	GT:AD:AF:DP	0/1:209,61:0.23:270
chr16	70211379	rs150702800	C	T	1568.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.978;ClippingRankSum=0.000;DB;DP=348;ExcessHet=3.0103;FS=0.443;MLEAC=1;MLEAF=0.500;MQ=47.95;MQRankSum=-5.171;QD=4.57;ReadPosRankSum=1.050;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:246,97:0.28:343
chr16	70348599	.	CTA	C	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.529;ClippingRankSum=0.000;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=2.757;QD=0.57;ReadPosRankSum=1.485;SOR=0.454;set=HC	GT:AD:AF:DP	0/1:80,10:0.11:90
chr16	70350114	.	G	GT	790.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.457;ClippingRankSum=0.000;DP=369;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=1.531;QD=3.27;ReadPosRankSum=0.310;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:163,79:0.33:242
chr16	70363125	.	CAA	C	100.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.828;ClippingRankSum=0.000;DP=100;ExcessHet=3.0103;FS=3.744;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.33;ReadPosRankSum=-1.516;SOR=1.562;set=HC	GT:AD:AF:DP	0/1:59,17:0.22:76
chr16	70390853	.	CA	C	165.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.588;ClippingRankSum=0.000;DP=68;ExcessHet=3.0103;FS=7.660;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=0.000;QD=3.19;ReadPosRankSum=0.028;SOR=1.219;set=HC	GT:AD:AF:DP	0/1:30,22:0.42:52
chr16	70405817	rs139997947	C	T	5055.77	.	AC=1;AF=0.500;AN=2;DB;DP=439;set=Intersection	GT:AD:AF:DP	0/1:206,231:0.53:437
chr16	70517824	rs113455884	G	T	2211.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:206,115:0.36:321
chr16	70530359	rs2303793	A	G	2027.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:72,85:0.54:157
chr16	70531366	rs2303792	C	T	588.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:17,23:0.57:40
chr16	70531754	rs2303791	T	G	1617.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:70,68:0.49:138
chr16	70543379	rs117020450	G	A	957.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:38,44:0.54:82
chr16	70546234	rs3762171	G	A	3371.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:111,156:0.58:267
chr16	70548297	rs3931036	G	A	7068.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr16	70551490	.	CA	C	79.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.804;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;FS=6.739;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.57;ReadPosRankSum=1.761;SOR=1.865;set=HC	GT:AD:AF:DP	0/1:16,15:0.48:31
chr16	70553382	rs7204583	G	C	668.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:21,24:0.53:45
chr16	70560361	rs8051506	G	A	1040.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:38,47:0.55:85
chr16	70563271	rs11075766	A	G	941.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:28,37:0.57:65
chr16	70569215	rs33910368	A	T	2426.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:99,112:0.53:211
chr16	70575852	rs11645437	A	T	1704.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:50,68:0.58:118
chr16	70590898	rs116924445	C	T	3471.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:127,162:0.56:289
chr16	70601254	rs7197262	G	A	1270.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:32,58:0.64:90
chr16	70602221	rs12909	C	T	5828.77	.	AC=1;AF=0.500;AN=2;DB;DP=474;set=Intersection	GT:AD:AF:DP	0/1:191,271:0.59:462
chr16	70603220	rs4985534	T	C	328.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:17,16:0.48:33
chr16	70604236	.	G	GT,GTTTTTT	58.74	.	AC=1,0;AF=0.500,0.00;AN=2;DP=22;set=Intersection	GT:AF:DP	0/1:0.67:12
chr16	70680744	rs3813904	G	C	770.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:36,33:0.48:69
chr16	70680850	rs3813905	C	G	2821.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:151,138:0.48:289
chr16	70690989	rs8046424	G	C	2287.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:88,108:0.55:196
chr16	70693872	rs3214847	C	CT	2046.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.370;ClippingRankSum=0.000;DB;DP=361;ExcessHet=3.0103;FS=1.460;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.110;QD=6.07;ReadPosRankSum=0.608;SOR=0.600;set=HC	GT:AD:AF:DP	0/1:197,140:0.42:337
chr16	70712381	rs145496459	C	T	661.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:37,29:0.44:66
chr16	70714811	.	CG	C	420.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.468;ClippingRankSum=0.000;DP=217;ExcessHet=3.0103;FS=51.809;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.32;ReadPosRankSum=1.306;SOR=0.022;set=HC	GT:AD:AF:DP	0/1:146,35:0.19:181
chr16	70726795	rs2278983	C	A	5831.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr16	70726940	rs2278984	G	C	702.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:64,36:0.36:100
chr16	70732483	rs7201952	G	A	1523.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:95,76:0.44:171
chr16	70732761	rs9673700	G	C	617.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:26,25:0.49:51
chr16	70796515	rs2305689	G	A	6263.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:134,178:0.57:312
chr16	70796535	rs2305690	C	T	5495.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:105,143:0.58:248
chr16	70816893	rs1875941	C	T	4943.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr16	70935224	rs75445533	A	T	200.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:14,10:0.42:24
chr16	70954915	rs1798531	G	T	3246.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.92;QD=30.92;SOR=3.507;set=HC	GT:AD:AF:DP	1/1:0,105:1.00:105
chr16	70972595	rs79004160	T	C	5962.77	.	AC=1;AF=0.500;AN=2;DB;DP=482;set=Intersection	GT:AD:AF:DP	0/1:201,281:0.58:482
chr16	70972784	rs1615602	A	G	974.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:35,38:0.52:73
chr16	70996115	rs77561642	GA	G	153.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.790;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=20.080;MLEAC=1;MLEAF=0.500;MQ=54.85;MQRankSum=-8.100;QD=1.05;ReadPosRankSum=0.199;SOR=0.097;set=HC	GT:AD:AF:DP	0/1:118,29:0.20:147
chr16	71015329	rs112779887	G	T	459.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.366;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.77;MQRankSum=-2.587;QD=11.21;ReadPosRankSum=2.259;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:19,22:0.54:41
chr16	71025394	rs149427312	C	T	547.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.627;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=16.062;MLEAC=1;MLEAF=0.500;MQ=47.56;MQRankSum=-2.082;QD=2.82;ReadPosRankSum=-1.480;SOR=0.196;set=HC	GT:AD:AF:DP	0/1:146,48:0.25:194
chr16	71100948	.	T	C	27	.	AC=1;AF=0.500;AN=2;BRF=0.4;FR=0.5000;HP=5;HapScore=2;MGOF=1;MMLQ=24;MQ=40.42;NF=0;NR=4;PP=27;QD=15.4428031368;SC=TGACCCGTTTTTTCACTATTC;SbPval=1.0;Source=Platypus;TC=19;TCF=5;TCR=14;TR=4;WE=71100956;WS=71100938;set=Platypus	GT:AD:AF:DP	1/0:15,4:0.21:19
chr16	71103114	.	A	G	300	.	AC=1;AF=0.500;AN=2;BRF=0.4;FR=0.5000;HP=1;HapScore=2;MGOF=8;MMLQ=28;MQ=41.37;NF=15;NR=1;PP=300;QD=20.9232007842;SC=AGGGCCCATGACTATTTTGAA;SbPval=0.65;Source=Platypus;TC=46;TCF=43;TCR=3;TR=16;WE=71103122;WS=71103104;set=Platypus	GT:AD:AF:DP	0/1:30,16:0.35:46
chr16	71103148	rs75792522	G	A	374.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:52,20:0.28:72
chr16	71109662	rs141412506	C	G	328.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:11,12:0.52:23
chr16	71163693	rs150028416	A	G	1854.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.129;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=7.285;MLEAC=1;MLEAF=0.500;MQ=51.20;MQRankSum=1.365;QD=8.71;ReadPosRankSum=-1.310;SOR=1.167;set=HC	GT:AD:AF:DP	0/1:124,89:0.42:213
chr16	71209398	rs145925047	TACC	T	8218.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.453;ClippingRankSum=0.000;DB;DP=492;ExcessHet=3.0103;FS=3.215;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=2.494;QD=18.98;ReadPosRankSum=-0.567;SOR=0.915;set=HC	GT:AD:AF:DP	0/1:219,214:0.49:433
chr16	71212979	rs2158102	T	C	832.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:24,32:0.57:56
chr16	71218926	rs3785347	T	A	5162.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr16	71219021	rs3785346	C	T	790.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:6,28:0.82:34
chr16	71220880	rs12927616	T	C	4637.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr16	71237587	rs1895528	T	C	2080.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:62,103:0.62:165
chr16	71237702	rs764600	C	T	2272.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:74,107:0.59:181
chr16	71264399	rs3743954	G	C	6994.77	.	AC=1;AF=0.500;AN=2;DB;DP=596;set=Intersection	GT:AD:AF:DP	0/1:266,313:0.54:579
chr16	71264523	rs12449210	T	A	17095.77	.	AC=1;AF=0.500;AN=2;DB;DP=1512;set=Intersection	GT:AD:AF:DP	0/1:704,802:0.53:1506
chr16	71264561	rs3743953	A	G	12194.77	.	AC=1;AF=0.500;AN=2;DB;DP=1147;set=Intersection	GT:AD:AF:DP	0/1:570,572:0.50:1142
chr16	71318001	rs3096381	G	T	5658.77	.	AC=1;AF=0.500;AN=2;DB;DP=703;set=Intersection	GT:AD:AF:DP	0/1:420,274:0.39:694
chr16	71318577	rs3803704	T	C	3856.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:125,167:0.57:292
chr16	71319539	rs3826247	C	T	6158.77	.	AC=1;AF=0.500;AN=2;DB;DP=600;set=Intersection	GT:AD:AF:DP	0/1:294,293:0.50:587
chr16	71319646	rs3096380	G	A	10751.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	1/1:0,378:1.00:378
chr16	71319900	rs9928675	T	C	1229.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:46,60:0.57:106
chr16	71406024	rs7203012	C	T	3955.77	.	AC=1;AF=0.500;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	0/1:182,215:0.54:397
chr16	71411446	rs12445308	G	T	1860.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.773;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=0.919;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.64;ReadPosRankSum=-0.189;SOR=0.889;set=HC	GT:AD:AF:DP	0/1:45,74:0.62:119
chr16	71416431	rs12919213	T	C	1180.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr16	71417783	rs35885273	C	T	4329.77	.	AC=1;AF=0.500;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	0/1:194,201:0.51:395
chr16	71418562	rs367842304	CCACA	C	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.55;ReadPosRankSum=0.126;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:3,2:0.40:5
chr16	71418572	rs111526151	A	G	46.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.253;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.35;ReadPosRankSum=0.126;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:3,2:0.40:5
chr16	71418586	.	ACATG	A	1052	.	AC=1;AF=0.500;AN=2;BRF=0.63;FR=0.5000;HP=2;HapScore=3;MGOF=41;MMLQ=28;MQ=53.96;NF=11;NR=1;PP=1052;QD=89.8333333333;SC=CACACATCACACATGCACACA;SbPval=0.64;Source=Platypus;TC=12;TCF=11;TCR=1;TR=12;WE=71418597;WS=71418563;set=Platypus	GT:AD:AF:DP	0/1:0,12:1.00:12
chr16	71419595	rs4327058	A	G	1678.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:56,70:0.56:126
chr16	71423487	rs34538886	C	T	4189.77	.	AC=1;AF=0.500;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	0/1:174,184:0.51:358
chr16	71465613	rs7203200	T	G	2226.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:72,100:0.58:172
chr16	71466088	rs4620964	A	G	16652.77	.	AC=1;AF=0.500;AN=2;DB;DP=1412;set=Intersection	GT:AD:AF:DP	0/1:605,789:0.57:1394
chr16	71483497	rs72795864	C	G	9760.77	.	AC=1;AF=0.500;AN=2;DB;DP=741;set=Intersection	GT:AD:AF:DP	0/1:310,426:0.58:736
chr16	71484621	rs66920642	CA	C	1286.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.704;ClippingRankSum=0.000;DB;DP=208;ExcessHet=3.0103;FS=3.881;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.53;ReadPosRankSum=0.406;SOR=1.058;set=HC	GT:AD:AF:DP	0/1:89,108:0.55:197
chr16	71487206	rs2070832	T	C	2858.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:95,131:0.58:226
chr16	71509588	rs2288487	G	A	3261.77	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:194,148:0.43:342
chr16	71509634	rs2288488	G	C	2681.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:195,133:0.41:328
chr16	71509685	rs2288489	C	G	10065.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:0,346:1.00:346
chr16	71509796	rs8050871	C	G	4713.77	.	AC=1;AF=0.500;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	0/1:229,214:0.48:443
chr16	71570705	rs144014662	G	A	6160.77	.	AC=1;AF=0.500;AN=2;DB;DP=688;set=Intersection	GT:AD:AF:DP	0/1:374,304:0.45:678
chr16	71603912	rs172650	C	A	2190.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:73,90:0.55:163
chr16	71607384	rs2432520	T	G	3957.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:100,179:0.64:279
chr16	71660115	rs4788820	G	C	3891.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.94;QD=26.12;SOR=1.314;set=HC	GT:AD:AF:DP	1/1:0,149:1.00:149
chr16	71660310	rs4788821	G	A	806.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:64,37:0.37:101
chr16	71660404	rs61753635	G	A	3753.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:96,174:0.64:270
chr16	71663545	.	T	TA	400.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=16.70;ReadPosRankSum=-0.000;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:2,22:0.92:24
chr16	71668634	rs12932850	T	G	3057.77	.	AC=1;AF=0.500;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	0/1:210,154:0.42:364
chr16	71668800	rs7206470	G	A	4975.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr16	71674882	rs2303225	C	G	8944.77	.	AC=1;AF=0.500;AN=2;DB;DP=1183;set=Intersection	GT:AD:AF:DP	0/1:708,465:0.40:1173
chr16	71678663	rs3752681	T	C	1620.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:129,87:0.40:216
chr16	71678679	rs7204608	G	C	6145.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr16	71682480	rs181074659	C	T	1377.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:70,62:0.47:132
chr16	71687002	.	CTT	C,CT	932.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.499;ClippingRankSum=0.000;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.14;MQRankSum=0.735;QD=11.81;ReadPosRankSum=-0.318;SOR=0.855;set=HC	GT:AD:AF:DP	1/2:12,41,26:0.52,0.33:79
chr16	71692443	rs2303224	A	G	2810.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:154,125:0.45:279
chr16	71697752	rs1035545	T	C	1255.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:45,57:0.56:102
chr16	71701248	rs1423983	G	A	3481.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr16	71703436	rs2032918	T	G	4546.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr16	71715915	rs11439127	G	GA	698.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.149;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.25;MQRankSum=0.000;QD=21.17;ReadPosRankSum=0.346;SOR=4.047;set=HC	GT:AD:AF:DP	1/1:1,32:0.97:33
chr16	71718366	rs7195059	C	T	4691.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr16	71736702	rs10626314	G	GTATTTT	276.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.54;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr16	71757939	rs7201649	C	G	166.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr16	71768500	rs2278031	T	C	3801.77	.	AC=1;AF=0.500;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	0/1:252,194:0.43:446
chr16	71772795	rs904764	G	A	4189.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.078;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.89;ReadPosRankSum=-0.148;SOR=0.500;set=HC	GT:AD:AF:DP	1/1:4,179:0.98:183
chr16	71773284	rs3838874	C	CA	1837.73	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:73,61:0.46:134
chr16	71780485	rs2270832	G	A	2988.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:155,149:0.49:304
chr16	71780599	rs2270831	T	C	1728.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:110,86:0.44:196
chr16	71783658	rs62056460	C	T	1116.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:75,53:0.41:128
chr16	71784000	rs2270829	A	T	933.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:51,40:0.44:91
chr16	71790166	rs8053186	G	A	2635.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr16	71792208	rs7185997	T	C	791.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:63,37:0.37:100
chr16	71792696	rs12919271	C	A	6950.77	.	AC=1;AF=0.500;AN=2;DB;DP=586;set=Intersection	GT:AD:AF:DP	0/1:245,319:0.57:564
chr16	71795577	.	CA	C	30.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.656;ClippingRankSum=0.000;DP=88;ExcessHet=3.0103;FS=2.583;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=2.053;QD=0.40;ReadPosRankSum=-1.663;SOR=1.090;set=HC	GT:AD:AF:DP	0/1:63,14:0.18:77
chr16	71799347	rs12149092	A	G	1883.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:61,77:0.56:138
chr16	71800384	rs12930206	T	A	980.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:68,49:0.42:117
chr16	71801946	rs12149533	C	T	1968.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:62,81:0.57:143
chr16	71801958	rs7192956	T	C	1670.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:45,60:0.57:105
chr16	71804956	rs9635524	C	G	11520.77	.	AC=2;AF=1.00;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	1/1:0,424:1.00:424
chr16	71805160	rs4788443	G	A	1712.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:7,76:0.92:83
chr16	71879868	rs4788563	A	C	174.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:21,9:0.30:30
chr16	71901648	rs17357420	T	C	629.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:40,30:0.43:70
chr16	71916826	.	G	GAAACC	1156.73	.	AC=1;AF=0.500;AN=2;DP=72;set=Intersection	GT:AD:AF:DP	0/1:38,29:0.43:67
chr16	71917058	rs2288029	G	A	2633.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:150,126:0.46:276
chr16	71928693	rs71386939	C	T	763.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.259;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=4.810;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.584;QD=4.15;ReadPosRankSum=0.380;SOR=0.493;set=HC	GT:AD:AF:DP	0/1:131,53:0.29:184
chr16	71928850	rs11075908	T	C	712.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:63,37:0.37:100
chr16	71955426	rs56089063	C	CAT	1856.73	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:92,54:0.37:146
chr16	71958025	rs74891946	C	G	12067.77	.	AC=1;AF=0.500;AN=2;DB;DP=946;set=Intersection	GT:AD:AF:DP	0/1:377,555:0.60:932
chr16	71958052	rs7197486	A	G	5646.77	.	AC=1;AF=0.500;AN=2;DB;DP=822;set=Intersection	GT:AD:AF:DP	0/1:507,308:0.38:815
chr16	71963924	rs34029919	C	T	1450.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:87,68:0.44:155
chr16	71967783	rs12445641	C	T	2645.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:134,120:0.47:254
chr16	71967927	rs17358402	C	T	6109.77	.	AC=1;AF=0.500;AN=2;DB;DP=760;set=Intersection	GT:AD:AF:DP	0/1:439,312:0.42:751
chr16	71968091	rs12149307	A	C	1391.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:77,69:0.47:146
chr16	71968147	rs12149325	G	C	852.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:36,34:0.49:70
chr16	71969497	rs11865456	C	T	1078.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:52,51:0.50:103
chr16	71971091	rs7191848	T	C	1088.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:84,50:0.37:134
chr16	71981374	rs8050058	T	G	1834.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:113,88:0.44:201
chr16	71981414	rs149635567	C	CTTTG	4101.73	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:175,109:0.38:284
chr16	71981630	rs9934803	T	G	1133.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:55,35:0.39:90
chr16	71981652	rs9934812	T	G	918.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:32,25:0.44:57
chr16	71983929	rs35377660	A	T	10192.77	.	AC=2;AF=1.00;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	1/1:1,386:1.00:387
chr16	71986764	rs11648353	G	A	338.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.809;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.69;ReadPosRankSum=0.477;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:24,15:0.38:39
chr16	71986946	rs7204708	A	G	2486.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:154,123:0.44:277
chr16	71987044	rs35601686	CAA	C	2011.73	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:87,56:0.39:143
chr16	71987960	rs34041171	A	AC	866.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.342;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=2.317;MLEAC=1;MLEAF=0.500;MQ=60.95;MQRankSum=0.000;QD=11.40;ReadPosRankSum=2.985;SOR=0.397;set=HC	GT:AD:AF:DP	0/1:41,35:0.46:76
chr16	71988106	rs9921412	C	T	1893.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:183,106:0.37:289
chr16	72007232	rs7197967	G	A	1810.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:85,82:0.49:167
chr16	72007399	rs9925415	C	T	2357.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:126,111:0.47:237
chr16	72011040	rs3929023	A	G	612.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:74,37:0.33:111
chr16	72011181	rs1559401	G	T	2910.77	.	AC=1;AF=0.500;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	0/1:219,149:0.40:368
chr16	72011193	rs1559400	A	C	3056.77	.	AC=1;AF=0.500;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	0/1:224,158:0.41:382
chr16	72011261	rs1559399	A	G	4118.77	.	AC=1;AF=0.500;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	0/1:248,195:0.44:443
chr16	72011450	rs1559398	G	A	1505.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.392;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=7.879;MLEAC=1;MLEAF=0.500;MQ=60.48;MQRankSum=2.119;QD=17.31;ReadPosRankSum=2.500;SOR=1.550;set=HC	GT:AD:AF:DP	0/1:45,42:0.48:87
chr16	72011457	rs55908226	C	G	1436.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.343;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=9.645;MLEAC=1;MLEAF=0.500;MQ=60.61;MQRankSum=1.917;QD=20.82;ReadPosRankSum=1.453;SOR=1.910;set=HC	GT:AD:AF:DP	0/1:32,37:0.54:69
chr16	72011461	rs59253077	T	TCCTC	1395.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.058;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=8.199;MLEAC=1;MLEAF=0.500;MQ=60.68;MQRankSum=1.786;QD=22.88;ReadPosRankSum=0.665;SOR=1.872;set=HC	GT:AD:AF:DP	0/1:26,35:0.57:61
chr16	72012072	rs8053841	C	T	1115.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:67,48:0.42:115
chr16	72012394	rs4045545	GTA	G	164.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.771;ClippingRankSum=-0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.24;ReadPosRankSum=1.057;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:11,9:0.45:20
chr16	72012398	rs2878405	A	G	532.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.698;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=13.749;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.45;ReadPosRankSum=1.803;SOR=2.948;set=HC	GT:AD:AF:DP	0/1:34,17:0.33:51
chr16	72012400	rs62053844	A	G	474.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.499;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=11.099;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.13;ReadPosRankSum=1.461;SOR=2.683;set=HC	GT:AD:AF:DP	0/1:36,16:0.31:52
chr16	72012402	rs62053845	A	G	474.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.038;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=11.099;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.13;ReadPosRankSum=1.392;SOR=2.683;set=HC	GT:AD:AF:DP	0/1:36,16:0.31:52
chr16	72012404	rs62053846	A	G	474.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.857;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=11.099;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.13;ReadPosRankSum=1.224;SOR=2.683;set=HC	GT:AD:AF:DP	0/1:36,16:0.31:52
chr16	72013797	rs7185272	G	C	6536.77	.	AC=1;AF=0.500;AN=2;DB;DP=767;set=Intersection	GT:AD:AF:DP	0/1:429,323:0.43:752
chr16	72018099	rs12443563	C	T	1430.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:60,67:0.53:127
chr16	72020134	rs12708923	T	C	4639.77	.	AC=1;AF=0.500;AN=2;DB;DP=606;set=Intersection	GT:AD:AF:DP	0/1:371,232:0.38:603
chr16	72020294	rs4788590	G	A	2409.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:141,110:0.44:251
chr16	72020323	rs4788591	A	G	1483.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:123,77:0.39:200
chr16	72027191	rs7191148	T	A	2794.77	.	AC=1;AF=0.500;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	0/1:197,141:0.42:338
chr16	72032231	rs16973585	T	A	3444.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:134,165:0.55:299
chr16	72033801	rs72787027	G	T	3809.77	.	AC=1;AF=0.500;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	0/1:217,183:0.46:400
chr16	72042682	rs3213422	A	C	4699.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr16	72042825	rs3213423	T	G	671.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:15,27:0.64:42
chr16	72046268	rs1465457	C	G	1396.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:61,54:0.47:115
chr16	72048332	rs3764310	T	C	557.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:23,24:0.51:47
chr16	72048632	rs8062895	A	G	596.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:23,25:0.52:48
chr16	72050885	rs11075914	G	C	2977.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr16	72054984	rs1862752	G	T	1608.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:107,82:0.43:189
chr16	72057282	rs2288002	A	G	2192.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:115,103:0.47:218
chr16	72088675	rs4788458	T	C	1384.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:96,71:0.43:167
chr16	72089958	rs148260617	ATG	A	624.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.704;ClippingRankSum=0.000;DB;DP=283;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.48;ReadPosRankSum=0.525;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:207,45:0.18:252
chr16	72092017	rs2070938	A	T	703.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr16	72107692	rs146688744	CGT	C	147.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.496;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.09;ReadPosRankSum=-1.348;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:115,20:0.15:135
chr16	72139396	rs150617	T	C	7790.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr16	72139537	rs42544	T	C	10697.77	.	AC=2;AF=1.00;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	1/1:0,408:1.00:408
chr16	72146441	rs7940	C	G	1465.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:103,65:0.39:168
chr16	72153125	rs4788459	C	G	1077.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:70,56:0.44:126
chr16	72156674	rs72787077	C	T	316.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:19,14:0.42:33
chr16	72156842	rs16973716	T	G	1605.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:148,84:0.36:232
chr16	72157000	rs12935266	C	G	300.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:34,14:0.29:48
chr16	72158950	rs3812986	T	C	1239.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:51,51:0.50:102
chr16	72162855	rs6499562	G	A	1641.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:104,73:0.41:177
chr16	72162966	rs34832584	G	T	2285.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:124,108:0.47:232
chr16	72184566	rs35370634	C	T	1368.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:83,65:0.44:148
chr16	72188376	rs117523217	T	C	2068.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:71,87:0.55:158
chr16	72198642	rs3852785	G	A	605.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:37,28:0.43:65
chr16	72821625	rs201772357	C	T	5090.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.946;ClippingRankSum=0.000;DB;DP=590;ExcessHet=3.0103;FS=1.745;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.90;ReadPosRankSum=-1.168;SOR=0.567;set=HC	GT:AD:AF:DP	0/1:276,238:0.46:514
chr16	72827758	rs699444	T	C	2535.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:129,112:0.46:241
chr16	72832135	rs740178	T	A	2814.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:157,130:0.45:287
chr16	72832618	.	TA	T	194.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.154;ClippingRankSum=0.000;DP=92;ExcessHet=3.0103;FS=1.118;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=1.850;QD=2.50;ReadPosRankSum=1.924;SOR=0.509;set=HC	GT:AD:AF:DP	0/1:51,27:0.35:78
chr16	72991286	rs2157786	C	T	5040.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr16	72991660	rs10852515	C	G	13360.77	.	AC=2;AF=1.00;AN=2;DB;DP=467;set=Intersection	GT:AD:AF:DP	1/1:0,458:1.00:458
chr16	72991715	rs4788682	A	G	11914.77	.	AC=2;AF=1.00;AN=2;DB;DP=523;set=Intersection	GT:AD:AF:DP	1/1:12,442:0.97:454
chr16	73126750	rs72795164	G	A	930.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:24,35:0.59:59
chr16	73126858	rs7189194	T	G	12517.77	.	AC=2;AF=1.00;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	1/1:0,443:1.00:443
chr16	73177898	rs76098878	A	G	765.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:33,32:0.49:65
chr16	73517248	rs1991048	G	C	1461.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.539;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=3.249;MLEAC=1;MLEAF=0.500;MQ=60.43;MQRankSum=1.513;QD=19.23;ReadPosRankSum=1.453;SOR=1.129;set=HC	GT:AD:AF:DP	0/1:32,44:0.58:76
chr16	73517250	rs147828241	A	AAG	896.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.571;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=3.487;MLEAC=1;MLEAF=0.500;MQ=60.63;MQRankSum=2.087;QD=11.80;ReadPosRankSum=1.097;SOR=1.276;set=HC	GT:AD:AF:DP	0/1:38,38:0.50:76
chr16	74320979	.	A	G	2217.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.409;ClippingRankSum=0.000;DP=420;ExcessHet=3.0103;FS=1.790;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.44;ReadPosRankSum=-1.009;SOR=0.848;set=HC	GT:AD:AF:DP	0/1:230,178:0.44:408
chr16	74333380	rs889641	T	C	3144.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:92,147:0.62:239
chr16	74335204	rs17336700	T	C	422.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:19,17:0.47:36
chr16	74366531	rs3743922	A	C	2548.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.707;ClippingRankSum=0.000;DB;DP=636;ExcessHet=3.0103;FS=0.585;MLEAC=1;MLEAF=0.500;MQ=57.97;MQRankSum=-4.533;QD=4.03;ReadPosRankSum=-0.342;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:454,178:0.28:632
chr16	74366672	rs3743923	G	A	172.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.044;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=6.796;MLEAC=1;MLEAF=0.500;MQ=58.42;MQRankSum=-5.279;QD=1.61;ReadPosRankSum=-0.981;SOR=2.310;set=HC	GT:AD:AF:DP	0/1:91,16:0.15:107
chr16	74372914	rs11353924	GT	G	261.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.505;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=0.931;QD=5.23;ReadPosRankSum=0.026;SOR=0.798;set=HC	GT:AD:AF:DP	0/1:25,25:0.50:50
chr16	74384296	rs11859725	C	T	7210.77	.	AC=1;AF=0.500;AN=2;DB;DP=618;set=Intersection	GT:AD:AF:DP	0/1:276,341:0.55:617
chr16	74384319	rs113276760	G	GT	8954.73	.	AC=1;AF=0.500;AN=2;DB;DP=540;set=Intersection	GT:AD:AF:DP	0/1:239,284:0.54:523
chr16	74394425	rs3852692	A	G	843.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.480;ClippingRankSum=0.000;DB;DP=264;ExcessHet=3.0103;FS=0.732;MLEAC=1;MLEAF=0.500;MQ=47.10;MQRankSum=-4.733;QD=3.20;ReadPosRankSum=-0.330;SOR=0.768;set=HC	GT:AD:AF:DP	0/1:212,52:0.20:264
chr16	74394486	rs118063615	G	A	2397.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.658;ClippingRankSum=0.000;DB;DP=727;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.32;MQRankSum=0.891;QD=3.36;ReadPosRankSum=-1.711;SOR=0.626;set=HC	GT:AD:AF:DP	0/1:547,167:0.23:714
chr16	74394671	rs62055171	T	C	5288.77	.	AC=1;AF=0.500;AN=2;DB;DP=826;set=Intersection	GT:AD:AF:DP	0/1:520,288:0.36:808
chr16	74394745	rs71391080	A	G	1612.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.918;ClippingRankSum=0.000;DB;DP=537;ExcessHet=3.0103;FS=16.180;MLEAC=1;MLEAF=0.500;MQ=55.61;MQRankSum=-18.956;QD=3.01;ReadPosRankSum=-0.144;SOR=1.835;set=HC	GT:AD:AF:DP	0/1:433,102:0.19:535
chr16	74443401	.	T	C	2656.77	.	AC=2;AF=1.00;AN=2;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.47;QD=32.80;SOR=8.814;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr16	74443542	rs146555914	G	C	13867.77	.	AC=1;AF=0.500;AN=2;DB;DP=1248;set=Intersection	GT:AD:AF:DP	0/1:587,661:0.53:1248
chr16	74485788	rs3851731	C	T	1337.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:76,59:0.44:135
chr16	74490529	rs3760055	G	A	1531.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:139,83:0.37:222
chr16	74491733	rs2288054	A	G	961.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:83,44:0.35:127
chr16	74493752	rs71158515	C	CT	107.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.096;ClippingRankSum=0.000;DB;DP=289;ExcessHet=3.0103;FS=0.716;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=2.121;QD=0.49;ReadPosRankSum=-0.830;SOR=0.824;set=HC	GT:AD:AF:DP	0/1:186,36:0.16:222
chr16	74501856	rs6564117	C	G	3838.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr16	74502642	rs62052081	T	A	216.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.650;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=1.466;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.50;ReadPosRankSum=-1.305;SOR=1.055;set=HC	GT:AD:AF:DP	0/1:48,14:0.23:62
chr16	74504005	rs2303279	T	C	3539.77	.	AC=1;AF=0.500;AN=2;DB;DP=472;set=Intersection	GT:AD:AF:DP	0/1:269,188:0.41:457
chr16	74504097	rs12716764	G	C	3789.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr16	74514032	rs1005715	T	C	1388.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:39,58:0.60:97
chr16	74530316	rs62052085	G	T	1326.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:107,64:0.37:171
chr16	74530611	.	T	TACACACAC	836.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.204;ClippingRankSum=0.000;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=0.000;QD=16.09;ReadPosRankSum=0.940;SOR=0.544;set=HC	GT:AD:AF:DP	0/1:24,28:0.54:52
chr16	74537591	rs4887772	C	T	15380.77	.	AC=2;AF=1.00;AN=2;DB;DP=579;set=Intersection	GT:AD:AF:DP	1/1:0,572:1.00:572
chr16	74566090	rs200740673	AAAT	A	813.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.520;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=2.270;MLEAC=1;MLEAF=0.500;MQ=60.60;MQRankSum=-0.861;QD=11.30;ReadPosRankSum=1.516;SOR=1.101;set=HC	GT:AD:AF:DP	0/1:20,52:0.72:72
chr16	74660174	rs12933037	G	A	1195.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:71,52:0.42:123
chr16	74660185	rs78219119	C	T	1860.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:63,84:0.57:147
chr16	74662597	rs11149759	C	T	1872.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:67,82:0.55:149
chr16	74664743	rs7193541	T	C	3279.77	.	AC=1;AF=0.500;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	0/1:204,163:0.44:367
chr16	74664810	rs7188880	A	T	3424.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:189,170:0.47:359
chr16	74664969	rs7193959	T	A	1364.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr16	74666634	rs4072450	G	C	2215.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr16	74670458	rs4888262	C	T	827.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:59,43:0.42:102
chr16	74694731	rs79470274	C	A	1054.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:39,45:0.54:84
chr16	74695079	rs8058922	G	T	11847.77	.	AC=2;AF=1.00;AN=2;DB;DP=448;set=Intersection	GT:AD:AF:DP	1/1:2,440:1.00:442
chr16	74706298	rs4888274	A	T	1762.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:107,87:0.45:194
chr16	74706349	rs9783779	T	C	4153.77	.	AC=1;AF=0.500;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	0/1:156,191:0.55:347
chr16	74709206	rs11862413	G	A	2633.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:77,107:0.58:184
chr16	74709737	rs7184423	C	A	3407.77	.	AC=1;AF=0.500;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	0/1:211,157:0.43:368
chr16	74712905	rs6564158	A	T	2602.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:57,116:0.67:173
chr16	74750405	rs2301865	G	A	6213.77	.	AC=1;AF=0.500;AN=2;DB;DP=487;set=Intersection	GT:AD:AF:DP	0/1:193,286:0.60:479
chr16	74753079	rs2074629	C	T	2093.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:75,94:0.56:169
chr16	74760292	rs11295057	CT	C	378.73	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:31,29:0.48:60
chr16	74808425	rs929881	G	A	1063.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:41,50:0.55:91
chr16	74908439	rs2870148	C	T	4421.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr16	74920075	.	C	CA	90.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.009;ClippingRankSum=0.000;DP=94;ExcessHet=3.0103;FS=1.156;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.000;QD=1.08;ReadPosRankSum=-0.237;SOR=1.007;set=HC	GT:AD:AF:DP	0/1:65,19:0.23:84
chr16	74920090	rs9936830	T	C	58.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.534;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=2.314;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.000;QD=0.54;ReadPosRankSum=-5.802;SOR=0.395;set=HC	GT:AD:AF:DP	0/1:93,16:0.15:109
chr16	74920191	rs14308	G	A	1552.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:112,80:0.42:192
chr16	74920374	rs4888305	C	T	944.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr16	74921661	rs9940014	A	T	1081.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:114,64:0.36:178
chr16	74922015	.	CAA	C	943.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.947;ClippingRankSum=0.000;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=0.000;QD=8.35;ReadPosRankSum=0.628;SOR=0.830;set=HC	GT:AD:AF:DP	0/1:62,51:0.45:113
chr16	74926520	rs11149776	C	T	1482.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:79,68:0.46:147
chr16	74927507	rs10718591	CA	C	1156.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.234;ClippingRankSum=0.000;DB;DP=269;ExcessHet=3.0103;FS=0.536;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.670;QD=4.48;ReadPosRankSum=1.242;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:146,112:0.43:258
chr16	74937828	rs9930270	A	G	248.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:9,10:0.53:19
chr16	74938083	rs9930498	A	G	660.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:21,30:0.59:51
chr16	74942768	rs78185943	C	T	2173.77	.	AC=1;AF=0.500;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	0/1:220,122:0.36:342
chr16	74943867	rs113238843	G	GT	1259.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.459;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=1.786;QD=10.16;ReadPosRankSum=-0.986;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:31,93:0.75:124
chr16	74943890	rs12325318	A	G	4619.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr16	75018928	rs201391135	G	A	11810.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.809;ClippingRankSum=0.000;DB;DP=975;ExcessHet=3.0103;FS=1.125;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.18;ReadPosRankSum=1.067;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:414,556:0.57:970
chr16	75034133	rs6564195	A	G	16260.77	.	AC=2;AF=1.00;AN=2;DB;DP=575;set=Intersection	GT:AD:AF:DP	1/1:0,563:1.00:563
chr16	75138927	rs2287989	A	G	3426.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr16	75148604	rs755099	G	A	9632.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	1/1:2,345:0.99:347
chr16	75186727	rs11859007	G	A	10255.77	.	AC=2;AF=1.00;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	1/1:0,363:1.00:363
chr16	75200378	rs9929570	T	C	1360.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr16	75200407	rs11865310	G	C	3385.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.97;SOR=1.300;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr16	75200416	rs7200789	T	C	3682.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.85;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,88:1.00:88
chr16	75200595	rs71380707	CAT	C	1446.73	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:81,44:0.35:125
chr16	75202998	rs12716783	A	C	2444.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr16	75204282	rs764551	C	A	1344.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:24,49:0.67:73
chr16	75238103	rs4737	C	T	14377.77	.	AC=2;AF=1.00;AN=2;DB;DP=547;set=Intersection	GT:AD:AF:DP	1/1:1,540:1.00:541
chr16	75240935	rs57900557	G	C	3517.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr16	75263974	rs6564241	T	C	4085.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr16	75267676	rs4888361	A	G	4207.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr16	75267956	rs58383536	C	A	1390.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:71,60:0.46:131
chr16	75269267	rs3169330	A	G	16325.77	.	AC=2;AF=1.00;AN=2;DB;DP=614;set=Intersection	GT:AD:AF:DP	1/1:0,603:1.00:603
chr16	75269477	rs61729595	A	C	4396.77	.	AC=1;AF=0.500;AN=2;DB;DP=474;set=Intersection	GT:AD:AF:DP	0/1:245,212:0.46:457
chr16	75276295	rs7195938	A	G	3609.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr16	75276775	rs1035539	G	A	4050.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr16	75277344	rs4888363	A	T	13651.77	.	AC=2;AF=1.00;AN=2;DB;DP=533;set=Intersection	GT:AD:AF:DP	1/1:1,518:1.00:519
chr16	75281964	rs1862737	A	C	7521.77	.	AC=1;AF=0.500;AN=2;DB;DP=648;set=Intersection	GT:AD:AF:DP	0/1:279,358:0.56:637
chr16	75285164	rs1862738	A	C	2584.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr16	75299928	rs117263010	C	A	32.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.328;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.68;ReadPosRankSum=-0.792;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr16	75300708	rs11149811	C	G	6088.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr16	75301605	rs9319482	A	G	257.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:17,13:0.43:30
chr16	75327700	rs6625	G	A	1198.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:79,52:0.40:131
chr16	75327916	rs6624	A	G	19398.77	.	AC=2;AF=1.00;AN=2;DB;DP=737;set=Intersection	GT:AD:AF:DP	1/1:0,724:1.00:724
chr16	75339131	rs7192981	T	G	3540.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr16	75445605	rs1109341	G	A	534.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:53,28:0.35:81
chr16	75445675	rs1109342	G	A	1266.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:85,62:0.42:147
chr16	75445906	rs247435	C	T	1786.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr16	75448273	rs8056236	C	T	583.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:27,25:0.48:52
chr16	75448659	rs8051407	A	G	1374.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:39,56:0.59:95
chr16	75467076	rs3833048	G	GC	848.73	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:28,34:0.55:62
chr16	75498252	rs150429885	C	CT	5420.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:148,142:0.49:290
chr16	75498253	rs34904236	G	T	5429.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:150,139:0.48:289
chr16	75652407	.	C	CA	237.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.358;ClippingRankSum=0.000;DP=209;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.36;MQRankSum=1.871;QD=1.27;ReadPosRankSum=0.310;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:142,45:0.24:187
chr16	75674252	rs370077957	TA	T	241.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.190;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=1.323;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=1.081;QD=5.26;ReadPosRankSum=0.137;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:19,27:0.59:46
chr16	75675609	rs5030748	T	C	5700.77	.	AC=1;AF=0.500;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	0/1:200,258:0.56:458
chr16	75688046	.	TAAAA	T	180.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.010;ClippingRankSum=-0.000;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.69;ReadPosRankSum=0.184;SOR=1.002;set=HC	GT:AD:AF:DP	0/1:18,9:0.33:27
chr16	75703213	.	TA	T	109.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.026;ClippingRankSum=0.000;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.84;ReadPosRankSum=-0.421;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:101,29:0.22:130
chr16	75794714	.	C	CT	89.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.370;ClippingRankSum=0.000;DP=371;ExcessHet=3.0103;FS=4.630;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.25;ReadPosRankSum=-0.535;SOR=1.006;set=HC	GT:AD:AF:DP	0/1:305,58:0.16:363
chr16	75794738	rs7205764	T	C	12983.77	.	AC=2;AF=1.00;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	1/1:0,426:1.00:426
chr16	76311602	rs59314262	G	GT	15079.73	.	AC=2;AF=1.00;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	1/1:0,409:1.00:409
chr16	76482546	rs56137120	C	T	1699.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr16	76482910	rs3947083	G	A	1468.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr16	76496025	rs57292037	A	G	1483.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr16	76496131	rs34782687	C	T	251.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr16	76523792	rs7201030	A	G	1811.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr16	76532392	rs12932943	C	T	3083.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr16	76532583	rs12933808	A	G	12058.77	.	AC=2;AF=1.00;AN=2;DB;DP=467;set=Intersection	GT:AD:AF:DP	1/1:0,454:1.00:454
chr16	76555015	rs11353699	CT	C	5444.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.082;ClippingRankSum=0.000;DB;DP=347;ExcessHet=3.0103;FS=5.299;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=16.30;ReadPosRankSum=2.079;SOR=1.248;set=HC	GT:AD:AF:DP	1/1:30,304:0.91:334
chr16	76569754	rs6564348	A	T	3570.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr16	76587202	rs7202925	T	G	7508.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr16	76587331	rs7184958	T	C	10441.77	.	AC=2;AF=1.00;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	1/1:0,405:1.00:405
chr16	76587647	rs4243123	G	C	7016.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr16	76592313	rs7196722	T	G	1248.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr16	76902722	rs34106659	C	G	546.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:42,29:0.41:71
chr16	76902847	rs7500280	T	C	1706.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.76;SOR=1.730;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr16	76902850	rs7499278	G	A	1706.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.91;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr16	77227180	rs2241416	G	A	1449.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:39,59:0.60:98
chr16	77228629	rs2232503	A	G	20317.77	.	AC=2;AF=1.00;AN=2;DB;DP=726;set=Intersection	GT:AD:AF:DP	1/1:0,717:1.00:717
chr16	77228866	rs2232504	T	C	4951.77	.	AC=1;AF=0.500;AN=2;DB;DP=658;set=Intersection	GT:AD:AF:DP	0/1:386,262:0.40:648
chr16	77229669	rs2017197	C	G	1548.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:82,74:0.47:156
chr16	77229759	rs1019565	T	C	300.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.260;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=3.150;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.74;ReadPosRankSum=-0.307;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:13,15:0.54:28
chr16	77231935	rs2232509	C	T	675.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:11,27:0.71:38
chr16	77233394	rs4888607	A	G	4723.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr16	77233445	rs11544783	C	T	1014.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:64,51:0.44:115
chr16	77240217	rs9928151	G	C	1371.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr16	77242035	rs9933799	G	A	1497.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr16	77242083	rs9934426	C	G	3302.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr16	77242284	rs1424146	G	A	12469.77	.	AC=2;AF=1.00;AN=2;DB;DP=467;set=Intersection	GT:AD:AF:DP	1/1:0,459:1.00:459
chr16	77242513	rs2343035	C	T	2287.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr16	77245139	rs61746433	T	C	4670.77	.	AC=1;AF=0.500;AN=2;DB;DP=542;set=Intersection	GT:AD:AF:DP	0/1:293,238:0.45:531
chr16	77245971	rs9924848	G	A	277.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:31,16:0.34:47
chr16	77246110	rs9924958	G	C	479.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:39,27:0.41:66
chr16	77246218	rs13331769	G	A	662.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr16	77246517	rs62049594	C	A	1179.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:77,64:0.45:141
chr16	77246795	rs2278049	C	G	14572.77	.	AC=2;AF=1.00;AN=2;DB;DP=558;set=Intersection	GT:AD:AF:DP	1/1:0,553:1.00:553
chr16	77246847	rs2278048	T	G	21865.77	.	AC=2;AF=1.00;AN=2;DB;DP=817;set=Intersection	GT:AD:AF:DP	1/1:2,805:1.00:807
chr16	77246953	rs2278047	G	C	14668.73	.	AC=2;AF=1.00;AN=2;DB;DP=533;set=Intersection	GT:AD:AF:DP	1/1:0,528:1.00:528
chr16	77246988	rs7203616	T	G	9273.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr16	77247005	rs77292914	C	T	2575.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:131,120:0.48:251
chr16	77281779	rs35625788	GTC	G	690.73	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:12,19:0.61:31
chr16	77281905	rs13332812	C	T	1825.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:95,87:0.48:182
chr16	77281998	rs13337994	A	G	2001.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;MQ=59.95;set=Intersection	GT:AD:AF:DP	0/1:110,100:0.48:210
chr16	77318020	rs71382662	C	CT	339.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.062;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=2.282;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.47;ReadPosRankSum=-1.710;SOR=0.374;set=HC	GT:AD:AF:DP	0/1:45,31:0.41:76
chr16	77318082	.	GTGTGATCTCCGCTCAC	G	745.73	.	AC=1;AF=0.500;AN=2;DP=37;set=Intersection	GT:AD:AF:DP	0/1:16,21:0.57:37
chr16	77327018	rs35296483	G	A	3777.77	.	AC=1;AF=0.500;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	0/1:169,171:0.50:340
chr16	77327211	rs67517591	T	TA	1657.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.547;ClippingRankSum=0.000;DB;DP=229;ExcessHet=3.0103;FS=3.961;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=0.891;QD=8.55;ReadPosRankSum=-0.066;SOR=1.031;set=HC	GT:AD:AF:DP	0/1:76,118:0.61:194
chr16	77327226	rs4888618	C	A	2890.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:81,110:0.58:191
chr16	77328895	rs12935229	C	T	4516.77	.	AC=1;AF=0.500;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	0/1:165,212:0.56:377
chr16	77328990	rs12935394	C	A	3654.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:149,170:0.53:319
chr16	77353973	rs9930984	G	T	7935.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr16	77355179	rs77699980	C	G	1044.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:55,44:0.44:99
chr16	77356115	rs74643232	G	C	1110.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:35,44:0.56:79
chr16	77359919	rs11640912	A	T	6872.77	.	AC=1;AF=0.500;AN=2;DB;DP=610;set=Intersection	GT:AD:AF:DP	0/1:276,321:0.54:597
chr16	77360019	rs62044892	G	T	1411.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:60,61:0.50:121
chr16	77375703	rs113693298	TA	T	1606.73	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:112,105:0.48:217
chr16	77389956	rs8059275	A	G	9796.77	.	AC=2;AF=1.00;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	1/1:0,372:1.00:372
chr16	77393207	rs2650907	G	C	5964.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr16	77393407	rs149323838	CAGTTTT	C	3099.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.021;ClippingRankSum=0.000;DB;DP=215;ExcessHet=3.0103;FS=5.584;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.989;QD=16.06;ReadPosRankSum=-0.355;SOR=1.137;set=HC	GT:AD:AF:DP	0/1:109,84:0.44:193
chr16	77393445	rs143941492	GGAA	G	1092.73	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=1.373;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=3.882;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.07;ReadPosRankSum=-0.762;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:16,48:0.75:64
chr16	77393449	rs202197230	A	C	351.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.844;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=3.159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.50;ReadPosRankSum=0.630;SOR=1.349;set=HC	GT:AD:AF:DP	0/1:34,30:0.47:64
chr16	77395948	rs1909802	C	G	1837.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr16	77396290	rs7192938	G	A	1790.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr16	77398386	rs2562119	A	T	490.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr16	77465036	rs1366545	C	G	863.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr16	77756613	rs2914456	G	A	1079.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:57,46:0.45:103
chr16	77759612	rs12448932	A	G	1815.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:103,83:0.45:186
chr16	77769369	rs308926	C	T	2651.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr16	77769647	rs186305	C	T	3899.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr16	77775459	rs11648791	G	A	2073.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:83,95:0.53:178
chr16	77775672	rs16946429	A	G	4415.77	.	AC=1;AF=0.500;AN=2;DB;DP=490;set=Intersection	GT:AD:AF:DP	0/1:272,215:0.44:487
chr16	77822901	rs12444404	C	G	2170.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:88,98:0.53:186
chr16	77850966	rs2966053	T	C	2695.77	.	AC=1;AF=0.500;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	0/1:186,126:0.40:312
chr16	77850999	rs2966052	A	G	1496.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:115,70:0.38:185
chr16	77918801	rs1864228	T	C	481.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:20,23:0.53:43
chr16	78062159	rs2075738	C	T	2452.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:117,111:0.49:228
chr16	78062190	rs2735403	T	C	4161.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr16	78062219	rs2204891	C	T	2935.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr16	78063000	rs7197560	T	C	2206.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:92,102:0.53:194
chr16	78063064	rs7190832	G	T	2750.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:87,126:0.59:213
chr16	78063143	rs7192416	C	T	2046.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:60,91:0.60:151
chr16	78064733	rs2072663	C	A	844.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:56,38:0.40:94
chr16	78085754	rs2344923	C	A	5758.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr16	78142209	rs4887937	T	C	1635.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.29;SOR=2.670;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr16	78143607	rs2287972	C	T	6792.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr16	78148794	rs1469117	T	G	1336.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr16	78198192	rs2303191	T	C	4324.77	.	AC=1;AF=0.500;AN=2;DB;DP=466;set=Intersection	GT:AD:AF:DP	0/1:247,213:0.46:460
chr16	78198236	rs2303190	G	A	2893.77	.	AC=1;AF=0.500;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	0/1:194,139:0.42:333
chr16	78312497	rs8050128	C	A	1469.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:82,71:0.46:153
chr16	78420775	rs11545029	G	A	10400.77	.	AC=2;AF=1.00;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	1/1:2,392:0.99:394
chr16	78458750	rs4130513	G	A	5461.77	.	AC=1;AF=0.500;AN=2;DB;DP=658;set=Intersection	GT:AD:AF:DP	0/1:379,273:0.42:652
chr16	78466437	rs3764340	C	G	4035.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.229;ClippingRankSum=0.000;DB;DP=499;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.20;ReadPosRankSum=3.006;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:277,215:0.44:492
chr16	78466758	rs3764342	A	C	460.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:19,18:0.49:37
chr16	78790765	rs7199110	C	T	4636.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr16	79245465	rs384216	T	C	1538.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:52,60:0.54:112
chr16	79245491	rs66481974	T	C	1848.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:93,84:0.47:177
chr16	79245765	rs73569323	C	T	3428.77	.	AC=1;AF=0.500;AN=2;DB;DP=357;MQ=60.03;set=Intersection	GT:AD:AF:DP	0/1:191,164:0.46:355
chr16	79245820	rs383362	G	T	2612.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;MQ=60.04;set=Intersection	GT:AD:AF:DP	0/1:125,121:0.49:246
chr16	79245873	rs138002331	G	GGTAAA	3573.73	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:93,91:0.49:184
chr16	79245904	rs78687618	G	A	1885.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:102,90:0.47:192
chr16	79245956	rs2288034	C	G	3840.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.483;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=2.530;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.43;ReadPosRankSum=0.359;SOR=0.898;set=HC	GT:AD:AF:DP	0/1:88,100:0.53:188
chr16	79245961	rs2288033	T	C	3895.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.181;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=1.107;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.98;ReadPosRankSum=0.452;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:94,101:0.52:195
chr16	79246078	rs2288032	G	A	532.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:25,25:0.50:50
chr16	79619727	rs60080524	GAAA	G,GA	2457.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.531;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.17;MQRankSum=0.455;QD=20.15;ReadPosRankSum=-0.741;SOR=0.791;set=HC	GT:AD:AF:DP	1/2:27,52,43:0.43,0.35:122
chr16	79628324	rs148849596	GA	G	2145.73	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:129,135:0.51:264
chr16	79628536	rs66467731	AT	A	1123.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.213;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=9.707;MLEAC=2;MLEAF=1.000;MQ=60.40;MQRankSum=0.852;QD=12.92;ReadPosRankSum=-0.859;SOR=0.061;set=HC	GT:AD:AF:DP	1/1:11,76:0.87:87
chr16	79633805	rs5818251	TGCC	T	3091.73	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:81,82:0.50:163
chr16	79998075	rs66539665	T	G	3823.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.546;ClippingRankSum=0.000;DB;DP=425;ExcessHet=3.0103;FS=1.879;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.26;ReadPosRankSum=2.907;SOR=0.872;set=HC	GT:AD:AF:DP	0/1:231,182:0.44:413
chr16	80574886	rs9922406	T	C	14520.77	.	AC=2;AF=1.00;AN=2;DB;DP=515;set=Intersection	GT:AD:AF:DP	1/1:0,508:1.00:508
chr16	80577098	rs8049769	G	T	3101.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr16	80581547	rs6564762	C	T	2501.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:142,118:0.45:260
chr16	80581580	rs6564763	A	C	3961.77	.	AC=1;AF=0.500;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	0/1:215,189:0.47:404
chr16	80581631	rs6564764	G	A	16860.77	.	AC=2;AF=1.00;AN=2;DB;DP=641;set=Intersection	GT:AD:AF:DP	1/1:0,634:1.00:634
chr16	80582867	rs9937217	G	T	5219.77	.	AC=1;AF=0.500;AN=2;DB;DP=499;set=Intersection	GT:AD:AF:DP	0/1:242,252:0.51:494
chr16	80583497	rs11866734	C	T	8229.77	.	AC=1;AF=0.500;AN=2;DB;DP=730;set=Intersection	GT:AD:AF:DP	0/1:330,388:0.54:718
chr16	80584342	rs8182107	A	C	1532.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:64,65:0.50:129
chr16	80641906	rs9940301	G	A	1453.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:87,69:0.44:156
chr16	80641931	rs9933302	T	C	3955.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.672;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=4.829;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.57;ReadPosRankSum=-0.460;SOR=1.011;set=HC	GT:AD:AF:DP	0/1:110,103:0.48:213
chr16	80641936	rs9940376	G	C	3994.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.741;ClippingRankSum=0.000;DB;DP=221;ExcessHet=3.0103;FS=6.657;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.16;ReadPosRankSum=-0.658;SOR=1.114;set=HC	GT:AD:AF:DP	0/1:113,107:0.49:220
chr16	80641976	rs376314033	C	T	3067.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:122,144:0.54:266
chr16	80654526	rs4888101	T	G	850.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:32,33:0.51:65
chr16	80654633	rs4889169	G	A	3041.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:117,141:0.55:258
chr16	80666886	rs59675671	T	C	865.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:28,35:0.56:63
chr16	80704886	rs7195952	T	C	4234.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:2,160:0.99:162
chr16	80718879	rs8049284	A	G	8634.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr16	80719086	rs8047798	G	C	3526.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr16	81014700	rs1477381	T	C	494.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr16	81015560	rs2549822	C	T	4034.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr16	81022203	rs34522854	TA	T	4599.73	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr16	81022232	rs2549833	T	C	4814.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr16	81025372	rs2244452	A	T	2056.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr16	81025490	rs2113196	A	C	9578.77	.	AC=2;AF=1.00;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	1/1:0,358:1.00:358
chr16	81025506	rs2113197	T	A	10589.77	.	AC=2;AF=1.00;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	1/1:0,393:1.00:393
chr16	81050965	rs935939	A	T	5088.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr16	81051327	rs935940	C	T	2067.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr16	81053682	rs10602593	CT	C	627.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.337;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=1.701;MLEAC=1;MLEAF=0.500;MQ=60.37;MQRankSum=0.853;QD=11.21;ReadPosRankSum=0.341;SOR=1.412;set=HC	GT:AD:AF:DP	0/1:14,42:0.75:56
chr16	81061827	rs2549887	G	A	8956.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,326:1.00:326
chr16	81062030	rs2549888	G	T	5075.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr16	81062151	rs35608064	CTT	C	22807.73	.	AC=2;AF=1.00;AN=2;DB;DP=513;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.06;QD=44.99;SOR=0.978;set=HC	GT:AD:AF:DP	1/1:0,507:1.00:507
chr16	81062157	rs114305409	T	C	10629.77	.	AC=2;AF=1.00;AN=2;DB;DP=529;set=Intersection	GT:AD:AF:DP	1/1:9,499:0.98:508
chr16	81062171	rs2602428	C	T	25694.77	.	AC=2;AF=1.00;AN=2;DB;DP=619;set=Intersection	GT:AD:AF:DP	1/1:0,615:1.00:615
chr16	81069449	rs2602430	A	G	322.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.83;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr16	81077915	rs2257378	T	C	23443.77	.	AC=2;AF=1.00;AN=2;DB;DP=844;set=Intersection	GT:AD:AF:DP	1/1:0,840:1.00:840
chr16	81094760	rs804884	A	G	4704.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr16	81095363	rs804885	C	T	18141.77	.	AC=2;AF=1.00;AN=2;DB;DP=665;set=Intersection	GT:AD:AF:DP	1/1:0,660:1.00:660
chr16	81118289	rs7187102	C	T	2143.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.47;SOR=1.339;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr16	81121145	rs7200400	T	C	662.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr16	81129822	rs8052579	G	A	747.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:2,29:0.94:31
chr16	81142257	rs1869348	T	C	5006.77	.	AC=1;AF=0.500;AN=2;DB;DP=527;set=Intersection	GT:AD:AF:DP	0/1:276,247:0.47:523
chr16	81142358	rs4520846	C	A	1142.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:71,54:0.43:125
chr16	81145630	rs8053975	C	G	3417.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr16	81145664	rs8054611	A	G	5809.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr16	81145675	rs8059153	T	C	6876.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr16	81145737	rs8059318	T	G	12075.77	.	AC=2;AF=1.00;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	1/1:0,458:1.00:458
chr16	81145755	rs11647962	A	T	4294.77	.	AC=1;AF=0.500;AN=2;DB;DP=532;set=Intersection	GT:AD:AF:DP	0/1:310,219:0.41:529
chr16	81145807	rs8054182	C	G	16040.77	.	AC=2;AF=1.00;AN=2;DB;DP=578;set=Intersection	GT:AD:AF:DP	1/1:0,573:1.00:573
chr16	81151122	rs4889238	A	C	24783.77	.	AC=2;AF=1.00;AN=2;DB;DP=921;set=Intersection	GT:AD:AF:DP	1/1:0,919:1.00:919
chr16	81151163	rs8053191	C	T	17973.77	.	AC=2;AF=1.00;AN=2;DB;DP=672;set=Intersection	GT:AD:AF:DP	1/1:0,672:1.00:672
chr16	81155068	.	C	CA	65.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.296;ClippingRankSum=0.000;DP=212;ExcessHet=3.0103;FS=2.958;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.34;ReadPosRankSum=-1.105;SOR=1.078;set=HC	GT:AD:AF:DP	0/1:161,35:0.18:196
chr16	81157324	rs4889241	G	A	4207.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr16	81157422	rs79054096	T	A	1834.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:99,90:0.48:189
chr16	81157521	rs4889242	G	A	960.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:23,41:0.64:64
chr16	81161578	rs7206183	G	A	7121.77	.	AC=1;AF=0.500;AN=2;DB;DP=728;set=Intersection	GT:AD:AF:DP	0/1:380,341:0.47:721
chr16	81161737	rs2084959	C	T	1665.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:84,78:0.48:162
chr16	81164274	rs11150345	C	G	1368.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr16	81167342	rs11150346	T	G	1402.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr16	81173030	rs4889243	A	G	459.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:22,21:0.49:43
chr16	81173051	rs77104177	C	T	524.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:31,25:0.45:56
chr16	81173136	rs12918619	T	C	2244.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:91,107:0.54:198
chr16	81173193	rs4889244	C	T	2914.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:125,138:0.52:263
chr16	81174978	rs117006360	A	G	1600.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:101,70:0.41:171
chr16	81174992	rs117414860	G	T	3061.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.812;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=3.316;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.39;ReadPosRankSum=1.109;SOR=0.930;set=HC	GT:AD:AF:DP	0/1:117,82:0.41:199
chr16	81174999	rs76162903	A	G	3313.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.345;ClippingRankSum=0.000;DB;DP=219;ExcessHet=3.0103;FS=1.071;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.27;ReadPosRankSum=-1.124;SOR=0.805;set=HC	GT:AD:AF:DP	0/1:123,94:0.43:217
chr16	81182025	rs74030553	C	A	534.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:19,24:0.56:43
chr16	81183266	rs8044870	A	G	1796.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr16	81183624	rs10617579	CTT	C	287.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.428;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=0.870;QD=8.99;ReadPosRankSum=-0.923;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:16,16:0.50:32
chr16	81185326	rs11649028	G	A	3809.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr16	81185416	rs8061038	A	G	10197.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:0,381:1.00:381
chr16	81187685	rs74030562	G	A	3119.77	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:189,153:0.45:342
chr16	81190294	rs4889251	G	A	4585.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr16	81190308	rs4889252	G	T	4913.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr16	81190328	rs4889253	G	A	1525.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:70,72:0.51:142
chr16	81190598	rs9938333	T	C	3108.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.420;ClippingRankSum=0.000;DB;DP=399;ExcessHet=3.0103;FS=1.212;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.87;ReadPosRankSum=1.365;SOR=0.777;set=HC	GT:AD:AF:DP	0/1:230,165:0.42:395
chr16	81190601	rs1453325	T	C	13134.77	.	AC=2;AF=1.00;AN=2;DB;DP=388;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.21;SOR=1.111;set=HC	GT:AD:AF:DP	1/1:0,384:1.00:384
chr16	81190613	rs1453324	A	G	9692.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	1/1:0,351:1.00:351
chr16	81190708	rs1453323	A	C	1259.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:33,59:0.64:92
chr16	81193156	rs10871403	C	G	2840.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:150,121:0.45:271
chr16	81193321	rs72628271	C	T	5024.77	.	AC=1;AF=0.500;AN=2;DB;DP=576;set=Intersection	GT:AD:AF:DP	0/1:321,245:0.43:566
chr16	81194382	rs2317117	T	C	4501.77	.	AC=1;AF=0.500;AN=2;DB;DP=532;set=Intersection	GT:AD:AF:DP	0/1:292,233:0.44:525
chr16	81197117	rs4889255	A	G	5070.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr16	81198147	rs16954787	G	A	597.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:49,31:0.39:80
chr16	81198182	rs10400941	G	C	885.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.278;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=4.678;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.70;ReadPosRankSum=-1.709;SOR=1.164;set=HC	GT:AD:AF:DP	0/1:69,46:0.40:115
chr16	81198306	rs10400943	C	A	1699.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:68,80:0.54:148
chr16	81198441	rs7191852	T	C	328.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:19,15:0.44:34
chr16	81199429	rs12925622	G	A	9421.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:0,360:1.00:360
chr16	81199520	rs12931217	T	C	5431.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr16	81199538	rs12931227	T	C	6831.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.51;SOR=1.354;set=HC	GT:AD:AF:DP	1/1:0,157:1.00:157
chr16	81199544	rs12925771	G	A	6680.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.45;SOR=1.593;set=HC	GT:AD:AF:DP	1/1:0,147:1.00:147
chr16	81199554	rs12926898	CA	TG	6046.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.46;SOR=1.893;set=HC	GT:AD:AF:DP	1/1:0,133:1.00:133
chr16	81199572	rs12927442	A	G	3053.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr16	81199600	rs12599110	G	A	2221.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr16	81201448	rs11313252	G	A	2675.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr16	81201507	rs34188236	C	A	2277.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:104,108:0.51:212
chr16	81204188	rs1901819	A	G	1123.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr16	81204720	rs35271642	C	A	2145.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:122,106:0.46:228
chr16	81208056	rs745209	A	G	1328.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:69,41:0.37:110
chr16	81208175	rs11150361	C	T	5145.77	.	AC=1;AF=0.500;AN=2;DB;DP=645;set=Intersection	GT:AD:AF:DP	0/1:380,261:0.41:641
chr16	81208203	rs11150362	G	T	6090.77	.	AC=1;AF=0.500;AN=2;DB;DP=737;set=Intersection	GT:AD:AF:DP	0/1:422,310:0.42:732
chr16	81208515	rs12596941	G	A	2555.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:164,125:0.43:289
chr16	81209207	rs2317114	T	C	1852.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:76,85:0.53:161
chr16	81209234	rs935933	C	T	1659.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:91,80:0.47:171
chr16	81209247	rs1869349	C	T	1613.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:96,81:0.46:177
chr16	81213081	rs4889259	G	A	1449.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr16	81213142	rs4889260	C	T	3751.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr16	81213378	rs4889261	A	G	9333.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	1/1:0,341:1.00:341
chr16	81213422	rs4889262	C	T	5130.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr16	81219329	rs9319563	G	T	17631.77	.	AC=2;AF=1.00;AN=2;DB;DP=671;set=Intersection	GT:AD:AF:DP	1/1:0,666:1.00:666
chr16	81219396	rs9674042	T	A	8839.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr16	81222447	.	CAA	C,CA	906.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.652;ClippingRankSum=0.000;DP=119;ExcessHet=3.0103;FS=2.128;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=8.80;ReadPosRankSum=1.949;SOR=1.051;set=HC	GT:AD:AF:DP	1/2:23,36,44:0.35,0.43:103
chr16	81222672	rs4889271	T	C	3227.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr16	81224234	rs12716909	T	C	3864.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr16	81224423	rs11647179	G	A	8167.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr16	81224504	.	T	C	1162.77	.	AC=1;AF=0.500;AN=2;DP=88;set=Intersection	GT:AD:AF:DP	0/1:34,53:0.61:87
chr16	81232275	rs7205673	G	A	3845.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr16	81232564	rs7194871	T	G	12873.77	.	AC=2;AF=1.00;AN=2;DB;DP=466;set=Intersection	GT:AD:AF:DP	1/1:0,462:1.00:462
chr16	81240931	rs11150368	T	C	1686.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr16	81241098	rs11150369	C	T	11488.73	.	AC=2;AF=1.00;AN=2;DB;DP=262;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.02;SOR=0.877;set=HC	GT:AD:AF:DP	1/1:0,261:1.00:261
chr16	81241098	.	CGG	TGC	2947	.	AC=2;AF=1.00;AN=2;BRF=0.43;FR=1.0000;HP=5;HapScore=1;MGOF=1;MMLQ=24;MQ=60.0;NF=73;NR=89;PP=2947;QD=20;SC=CTTACCTCGGCGGGTTGTAGG;SbPval=0.48;Source=Platypus;TC=171;TCF=76;TCR=95;TR=162;WE=81241108;WS=81241088;set=Platypus	GT:AD:AF:DP	1/1:9,162:0.95:171
chr16	81241100	rs11150370	G	C	6874.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.832;ClippingRankSum=0.000;DB;DP=257;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.96;ReadPosRankSum=0.980;SOR=0.865;set=HC	GT:AD:AF:DP	1/1:2,253:0.99:255
chr16	81242102	rs6420424	G	A	8862.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;MQ=60.03;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr16	81242148	rs55980345	GTT	G	14478.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=330;MQ=60.03;set=Intersection	GT:AD:AF:DP	1/1:0,323:1.00:323
chr16	81242151	rs5818326	T	C	14487.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=327;MQ=60.03;set=Intersection	GT:AD:AF:DP	1/1:0,325:1.00:325
chr16	81242194	rs6564838	T	C	7662.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr16	81242366	rs6564839	T	C	1723.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr16	81242386	rs6564840	T	G	1095.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr16	81248716	rs12933806	C	T	2761.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:160,139:0.46:299
chr16	81248745	rs8060294	A	G	3843.77	.	AC=1;AF=0.500;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	0/1:164,185:0.53:349
chr16	81248935	rs8044334	T	G	1283.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:56,57:0.50:113
chr16	81249954	rs7191351	T	A	3891.77	.	AC=1;AF=0.500;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	0/1:167,183:0.52:350
chr16	81253526	rs141224532	A	ATTATT	784.73	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:14,19:0.58:33
chr16	81253637	rs9924275	A	G	5477.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.383;ClippingRankSum=0.000;DB;DP=238;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.51;ReadPosRankSum=0.663;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:98,135:0.58:233
chr16	81253642	rs62052455	AG	TC	5546.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.690;ClippingRankSum=0.000;DB;DP=254;ExcessHet=3.0103;FS=0.491;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.28;ReadPosRankSum=1.037;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:109,140:0.56:249
chr16	81253745	rs9934272	C	G	6108.77	.	AC=1;AF=0.500;AN=2;DB;DP=526;set=Intersection	GT:AD:AF:DP	0/1:227,284:0.56:511
chr16	81253759	rs9924371	A	G	5756.77	.	AC=1;AF=0.500;AN=2;DB;DP=536;set=Intersection	GT:AD:AF:DP	0/1:242,281:0.54:523
chr16	81253917	rs9924530	A	G	4061.77	.	AC=1;AF=0.500;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	0/1:164,180:0.52:344
chr16	81254023	rs35807120	T	TA	1089.73	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:35,33:0.49:68
chr16	81272625	rs11339898	AT	A,ATT	921.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.123;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=5.310;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=10.24;ReadPosRankSum=0.713;SOR=0.187;set=HC	GT:AD:AF:DP	1/2:10,47,33:0.52,0.37:90
chr16	81320830	rs8048342	A	G	1436.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr16	81398520	rs4889313	G	A	9121.77	.	AC=2;AF=1.00;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	1/1:0,339:1.00:339
chr16	81641452	rs7203914	A	G	661.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr16	81679151	rs4889356	A	G	23170.77	.	AC=2;AF=1.00;AN=2;DB;DP=904;set=Intersection	GT:AD:AF:DP	1/1:4,886:1.00:890
chr16	81704014	rs12920501	C	G	245.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:16,12:0.43:28
chr16	81704033	rs8044418	C	G	229.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:13,11:0.46:24
chr16	81712240	rs74910737	G	GCC	1040.73	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:105,39:0.27:144
chr16	81726584	rs11642818	A	C	687.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:21,27:0.56:48
chr16	81726863	rs2288011	C	G	7409.77	.	AC=1;AF=0.500;AN=2;DB;DP=850;set=Intersection	GT:AD:AF:DP	0/1:460,366:0.44:826
chr16	81730381	rs9933631	C	A	12313.77	.	AC=2;AF=1.00;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	1/1:0,454:1.00:454
chr16	81736324	rs4888167	C	T	1900.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:82,83:0.50:165
chr16	81739376	rs3968320	T	A	461.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:21,20:0.49:41
chr16	81739404	rs9936604	T	C	178.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:14,8:0.36:22
chr16	81740829	rs67721827	T	C	2475.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:85,108:0.56:193
chr16	81743328	rs68116357	A	G	3839.77	.	AC=1;AF=0.500;AN=2;DB;DP=532;set=Intersection	GT:AD:AF:DP	0/1:318,198:0.38:516
chr16	81816787	rs4476171	T	A	3606.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr16	81816818	rs72834729	C	T	1083.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:58,55:0.49:113
chr16	81819768	rs1143685	T	C	3957.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr16	81819820	rs4294811	G	A	1796.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr16	81887903	rs4072831	A	G	436.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:35,20:0.36:55
chr16	81887938	rs4522412	T	C	809.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:77,41:0.35:118
chr16	81887957	rs4072830	A	C	1266.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:91,60:0.40:151
chr16	81888152	rs1143686	A	G	2840.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:166,135:0.45:301
chr16	81888237	rs4072828	G	C	1168.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:31,42:0.58:73
chr16	81891998	rs4341734	G	C	9355.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:0,346:1.00:346
chr16	81892041	rs5818357	GGGA	G	5182.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:126,136:0.52:262
chr16	81892043	rs67392656	GAAAA	G	4143.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.515;ClippingRankSum=0.000;DB;DP=264;ExcessHet=3.0103;FS=3.659;MLEAC=1;MLEAF=0.500;MQ=60.41;MQRankSum=-2.832;QD=16.51;ReadPosRankSum=0.669;SOR=0.489;set=HC	GT:AD:AF:DP	0/1:137,114:0.45:251
chr16	81892048	rs5016604	A	C	5134.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.151;ClippingRankSum=0.000;DB;DP=256;ExcessHet=3.0103;FS=5.080;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=2.608;QD=20.14;ReadPosRankSum=0.686;SOR=1.017;set=HC	GT:AD:AF:DP	0/1:124,131:0.51:255
chr16	81892708	rs4888183	T	A	1818.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:81,84:0.51:165
chr16	81892895	rs41309272	C	T	1393.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:62,65:0.51:127
chr16	81902746	rs41301799	C	G	2573.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:81,112:0.58:193
chr16	81902763	rs56070867	A	G	3141.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:95,138:0.59:233
chr16	81902797	rs12445580	A	G	10045.77	.	AC=2;AF=1.00;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	1/1:1,359:1.00:360
chr16	81903055	rs4889420	G	A	1832.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:1,57:0.98:58
chr16	81904374	rs146168517	A	AT	532.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr16	81904375	rs35039495	C	A	541.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr16	81904433	rs34761601	TG	T	1224.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr16	81904674	rs7192509	T	C	2504.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr16	81904711	rs7192535	T	A	1622.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr16	81914583	rs11865395	C	T	3064.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:117,145:0.55:262
chr16	81917099	rs6564928	G	T	644.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:22,26:0.54:48
chr16	81922813	rs1143687	C	T	5714.77	.	AC=1;AF=0.500;AN=2;DB;DP=475;set=Intersection	GT:AD:AF:DP	0/1:199,269:0.57:468
chr16	81924994	rs4889428	C	T	1666.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:53,77:0.59:130
chr16	81927217	rs4889430	G	C	1005.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:16,37:0.70:53
chr16	81929379	rs13333348	G	A	1414.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:75,66:0.47:141
chr16	81929527	rs13333716	C	G	4207.77	.	AC=1;AF=0.500;AN=2;DB;DP=572;set=Intersection	GT:AD:AF:DP	0/1:333,226:0.40:559
chr16	81929641	rs9928597	G	A	2296.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:131,107:0.45:238
chr16	81931362	rs8053636	T	C	2840.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr16	81931397	rs117425235	G	A	2000.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:82,91:0.53:173
chr16	81939150	rs4435248	G	C	1855.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:47,77:0.62:124
chr16	81939157	rs11859176	G	T	850.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:74,46:0.38:120
chr16	81941160	rs41301803	A	G	603.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:30,31:0.51:61
chr16	81941319	rs1143689	C	T	2663.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:136,129:0.49:265
chr16	81941934	rs62044874	G	C	1081.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:62,49:0.44:111
chr16	81946368	rs41305765	A	C	1912.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:105,96:0.48:201
chr16	81946423	rs4243222	C	T	1207.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:50,51:0.50:101
chr16	81946471	rs4243223	G	T	664.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:25,28:0.53:53
chr16	81953081	rs12448130	T	C	2899.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr16	81953368	rs12448152	A	G	3375.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr16	81954789	rs12446127	C	G	4773.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.428;ClippingRankSum=0.000;DB;DP=375;ExcessHet=3.0103;FS=2.280;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=0.000;QD=12.83;ReadPosRankSum=0.756;SOR=0.568;set=HC	GT:AD:AF:DP	0/1:154,218:0.59:372
chr16	81954996	.	A	AT	62.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.451;ClippingRankSum=0.000;DP=186;ExcessHet=3.0103;FS=3.830;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.000;QD=0.50;ReadPosRankSum=0.374;SOR=1.226;set=HC	GT:AD:AF:DP	0/1:101,25:0.20:126
chr16	81956927	rs4485360	C	G	1911.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr16	81962071	rs4366702	A	C	2343.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr16	81964977	rs7187863	A	G	701.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:49,36:0.42:85
chr16	81971403	rs1071644	T	C	9700.77	.	AC=2;AF=1.00;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	1/1:0,372:1.00:372
chr16	81973474	rs4405546	C	A	3846.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr16	82124776	rs2955154	G	T	2143.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr16	82182832	rs11859599	C	G	1662.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:62,69:0.53:131
chr16	82197883	rs2303266	G	A	313.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:12,14:0.54:26
chr16	82203705	rs2303265	A	C	12816.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.764;ClippingRankSum=0.000;DB;DP=627;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.44;ReadPosRankSum=1.333;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:300,327:0.52:627
chr16	82203711	rs2303264	G	T	13068.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.288;ClippingRankSum=0.000;DB;DP=663;ExcessHet=3.0103;FS=0.523;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.71;ReadPosRankSum=1.202;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:320,343:0.52:663
chr16	82203742	rs1134847	T	C	15597.77	.	AC=1;AF=0.500;AN=2;DB;DP=830;set=Intersection	GT:AD:AF:DP	0/1:406,424:0.51:830
chr16	82203758	rs2303262	C	T	8278.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.262;ClippingRankSum=0.000;DB;DP=805;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.30;ReadPosRankSum=1.178;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:403,401:0.50:804
chr16	82203768	rs2303261	G	T	15453.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.116;ClippingRankSum=0.000;DB;DP=777;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.89;ReadPosRankSum=0.816;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:384,393:0.51:777
chr16	82203786	rs2303260	C	G	13581.77	.	AC=1;AF=0.500;AN=2;DB;DP=691;set=Intersection	GT:AD:AF:DP	0/1:342,349:0.51:691
chr16	82672920	rs12444222	G	A	2272.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:119,111:0.48:230
chr16	82673047	rs4782724	C	T	13688.77	.	AC=2;AF=1.00;AN=2;DB;DP=512;set=Intersection	GT:AD:AF:DP	1/1:0,507:1.00:507
chr16	82882118	rs1585533	A	G	1587.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:60,58:0.49:118
chr16	82882187	rs35909991	TG	T	1138.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.464;ClippingRankSum=0.000;DB;DP=461;ExcessHet=3.0103;FS=0.591;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.66;ReadPosRankSum=1.718;SOR=0.583;set=HC	GT:AD:AF:DP	0/1:302,126:0.29:428
chr16	82882417	rs35862345	C	G	2102.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:71,82:0.54:153
chr16	82917768	rs929847	G	C	5695.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr16	82917852	rs929848	T	C	8586.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,326:1.00:326
chr16	83065965	rs2228685	T	A	647.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:19,27:0.59:46
chr16	83159350	rs7196370	A	C	2961.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr16	83205290	rs56165681	G	T	2315.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:185,125:0.40:310
chr16	83214480	rs7188594	C	A	2175.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:180,112:0.38:292
chr16	83251210	rs4572385	G	A	445.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr16	83520078	rs2306907	G	A	2221.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:107,100:0.48:207
chr16	83542061	rs4782540	C	T	720.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:20,32:0.62:52
chr16	83658759	.	C	CTGTGTGTGTGTGTGCTCA	2562.73	.	AC=1;AF=0.500;AN=2;DP=406;set=Intersection	GT:AD:AF:DP	0/1:77,73:0.49:150
chr16	83658807	.	G	GTGCT	1615	.	AC=1;AF=0.500;AN=2;BRF=0.43;FR=0.5000;HP=1;HapScore=1;MGOF=58;MMLQ=28;MQ=59.81;NF=3;NR=29;PP=1615;QD=50.9375;SC=GTGTGTGTGTGCATGTGTGTG;SbPval=0.56;Source=Platypus;TC=108;TCF=10;TCR=98;TR=32;WE=83658815;WS=83658797;set=Platypus	GT:AD:AF:DP	0/1:76,32:0.30:108
chr16	83658857	rs17760896	C	G	1298.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:19,44:0.70:63
chr16	83753815	rs72797298	T	C	14051.77	.	AC=2;AF=1.00;AN=2;DB;DP=545;set=Intersection	GT:AD:AF:DP	1/1:0,542:1.00:542
chr16	83753910	rs142886033	TCATGCACACA	T	4017.73	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:142,112:0.44:254
chr16	83775105	rs142704908	A	ATATATG	46.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.054;ClippingRankSum=-0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.79;MQRankSum=-0.385;QD=3.59;ReadPosRankSum=0.210;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:9,4:0.31:13
chr16	83781604	rs16961631	T	C	1724.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:62,70:0.53:132
chr16	83813511	rs57930285	G	A	8482.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.339;ClippingRankSum=0.000;DB;DP=399;ExcessHet=3.0103;FS=0.777;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.31;ReadPosRankSum=-0.363;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:184,214:0.54:398
chr16	83813514	rs16961737	A	G	8631.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.517;ClippingRankSum=0.000;DB;DP=418;ExcessHet=3.0103;FS=0.534;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.70;ReadPosRankSum=-0.221;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:193,224:0.54:417
chr16	83816828	rs153654	A	G	4109.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr16	83817019	rs1048612	A	G	4828.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr16	83828488	rs74786055	A	G	812.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:37,53:0.59:90
chr16	83828544	rs3743617	C	G	3889.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:109,162:0.60:271
chr16	83842792	rs8053753	G	T	435.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:33,22:0.40:55
chr16	83873259	rs435383	G	A	824.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr16	83873285	rs435367	G	A	892.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr16	83873300	rs146203605	T	TTG	903.73	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:11,36:0.77:47
chr16	83873312	rs367415	C	G	1721.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.293;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=34.44;ReadPosRankSum=0.913;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:4,46:0.92:50
chr16	83886468	rs150603407	GTGCACACA	G	16131.73	.	AC=2;AF=1.00;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	1/1:0,377:1.00:377
chr16	83933296	rs446036	T	C	2511.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:2,93:0.98:95
chr16	83982460	rs4782863	A	G	2322.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:85,104:0.55:189
chr16	83982960	rs4782864	C	T	4510.77	.	AC=1;AF=0.500;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	0/1:144,204:0.59:348
chr16	83983071	rs4782865	C	T	4600.77	.	AC=1;AF=0.500;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	0/1:157,214:0.58:371
chr16	83983755	rs2245008	G	A	3152.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:136,85:0.38:221
chr16	83983775	rs12933677	T	C	4342.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:194,141:0.42:335
chr16	83983867	.	C	T	2962	.	AC=1;AF=0.500;AN=2;BRF=0.52;FR=0.5000;HP=1;HapScore=1;MGOF=35;MMLQ=24;MQ=58.76;NF=168;NR=120;PP=2962;QD=20;SC=GGCAGATACGCACACACAGAC;SbPval=0.73;Source=Platypus;TC=645;TCF=347;TCR=298;TR=288;WE=83983875;WS=83983857;set=Platypus	GT:AD:AF:DP	0/1:357,288:0.45:645
chr16	83983892	.	CA	TG	2944	.	AC=1;AF=0.500;AN=2;BRF=0.54;FR=0.5000;HP=1;HapScore=1;MGOF=28;MMLQ=21;MQ=58.34;NF=149;NR=112;PP=2944;QD=20;SC=GCATACATACCAGCACACACG;SbPval=0.8;Source=Platypus;TC=607;TCF=310;TCR=297;TR=261;WE=83983901;WS=83983882;set=Platypus	GT:AD:AF:DP	0/1:346,261:0.43:607
chr16	83983920	.	G	A	2962	.	AC=1;AF=0.500;AN=2;BRF=0.57;FR=0.5000;HP=1;HapScore=2;MGOF=37;MMLQ=28;MQ=55.65;NF=127;NR=108;PP=2962;QD=20;SC=ACATGCACACGTGAGCACATG;SbPval=0.28;Source=Platypus;TC=531;TCF=254;TCR=277;TR=235;WE=83983928;WS=83983910;set=Platypus	GT:AD:AF:DP	1/0:296,235:0.44:531
chr16	83984578	.	GCA	G	2442	.	AC=1;AF=0.500;AN=2;BRF=0.52;FR=0.5000;HP=1;HapScore=1;MGOF=16;MMLQ=24;MQ=49.19;NF=31;NR=12;PP=2442;QD=57.3488372093;SC=ATACATACTGGCACACACGTA;SbPval=0.92;Source=Platypus;TC=147;TCF=87;TCR=60;TR=43;WE=83984587;WS=83984566;set=Platypus	GT:AD:AF:DP	1/0:104,43:0.29:147
chr16	83984706	rs147293432	CCT	C	503.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.146;ClippingRankSum=0.000;DB;DP=695;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.80;ReadPosRankSum=0.968;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:560,72:0.11:632
chr16	83984776	rs28555129	A	C	8373.77	.	AC=1;AF=0.500;AN=2;DB;DP=687;set=Intersection	GT:AD:AF:DP	0/1:295,389:0.57:684
chr16	83984844	rs2244899	A	C	5813.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.723;ClippingRankSum=0.000;DB;DP=287;ExcessHet=3.0103;FS=2.072;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.26;ReadPosRankSum=-0.043;SOR=0.853;set=HC	GT:AD:AF:DP	0/1:131,156:0.54:287
chr16	83984850	rs2244898	C	G	5630.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.803;ClippingRankSum=0.000;DB;DP=267;ExcessHet=3.0103;FS=4.331;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.09;ReadPosRankSum=1.473;SOR=0.968;set=HC	GT:AD:AF:DP	0/1:127,140:0.52:267
chr16	83986885	rs7203516	C	G	14427.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.064;ClippingRankSum=0.000;DB;DP=671;ExcessHet=3.0103;FS=1.104;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.53;ReadPosRankSum=0.780;SOR=0.805;set=HC	GT:AD:AF:DP	0/1:300,370:0.55:670
chr16	83986888	rs7203864	G	A	14424.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.710;ClippingRankSum=0.000;DB;DP=674;ExcessHet=3.0103;FS=1.738;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.43;ReadPosRankSum=1.077;SOR=0.834;set=HC	GT:AD:AF:DP	0/1:305,368:0.55:673
chr16	83992785	rs2665296	G	A	14989.77	.	AC=2;AF=1.00;AN=2;DB;DP=562;set=Intersection	GT:AD:AF:DP	1/1:0,550:1.00:550
chr16	83999261	rs35132222	C	A	8279.77	.	AC=1;AF=0.500;AN=2;DB;DP=919;set=Intersection	GT:AD:AF:DP	0/1:496,408:0.45:904
chr16	84027225	.	CTGTG	C,CTG	1470.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.978;ClippingRankSum=0.000;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.09;MQRankSum=0.356;QD=27.24;ReadPosRankSum=1.459;SOR=0.859;set=HC	GT:AD:AF:DP	1/2:3,35,16:0.65,0.30:54
chr16	84050037	rs12929392	G	C	769.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:43,35:0.45:78
chr16	84056325	rs5818479	CTT	C	2422.73	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:121,68:0.36:189
chr16	84063320	rs143276186	A	AAGGAAG	2678.73	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:73,70:0.49:143
chr16	84065689	rs113463766	G	A	1003.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:59,48:0.45:107
chr16	84065710	rs907043	A	G	3218.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr16	84070238	rs8057543	C	A	943.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:26,40:0.61:66
chr16	84070500	rs1317524	C	G	1328.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.660;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=6.447;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.13;ReadPosRankSum=2.201;SOR=1.678;set=HC	GT:AD:AF:DP	0/1:30,36:0.55:66
chr16	84070510	rs1876962	G	A	1396.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.819;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=5.009;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.08;ReadPosRankSum=0.044;SOR=1.617;set=HC	GT:AD:AF:DP	0/1:23,35:0.60:58
chr16	84070514	rs1876960	A	C	1329.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.074;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=3.089;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.75;ReadPosRankSum=-0.257;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:22,34:0.61:56
chr16	84121078	rs5818481	CA	C	434.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.351;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.94;ReadPosRankSum=1.677;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:90,58:0.39:148
chr16	84124604	rs11325729	CA	C	629.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.206;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.979;QD=4.66;ReadPosRankSum=1.693;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:69,66:0.49:135
chr16	84132628	rs10690442	G	GAC	19198.73	.	AC=2;AF=1.00;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	1/1:0,428:1.00:428
chr16	84135453	rs1049884	A	T	6680.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr16	84135493	rs907045	A	G	3515.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr16	84135515	rs11550471	C	T	2376.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr16	84158248	rs4378600	G	C	4075.77	.	AC=1;AF=0.500;AN=2;DB;DP=503;set=Intersection	GT:AD:AF:DP	0/1:288,207:0.42:495
chr16	84163470	.	G	GA	1496.73	.	AC=1;AF=0.500;AN=2;DP=150;MQ=60.07;set=Intersection	GT:AD:AF:DP	0/1:62,76:0.55:138
chr16	84203612	rs17856705	A	G	2061.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:78,91:0.54:169
chr16	84203939	rs11644164	C	T	17857.77	.	AC=1;AF=0.500;AN=2;DB;DP=1604;set=Intersection	GT:AD:AF:DP	0/1:728,851:0.54:1579
chr16	84204043	rs4578631	T	A	14009.77	.	AC=1;AF=0.500;AN=2;DB;DP=1375;set=Intersection	GT:AD:AF:DP	0/1:654,674:0.51:1328
chr16	84205726	rs12926474	G	A	1777.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr16	84208335	rs3826151	G	T	10130.77	.	AC=1;AF=0.500;AN=2;DB;DP=979;set=Intersection	GT:AD:AF:DP	0/1:473,496:0.51:969
chr16	84208442	rs67628212	T	C	7653.77	.	AC=1;AF=0.500;AN=2;DB;DP=473;set=Intersection	GT:AD:AF:DP	0/1:255,209:0.45:464
chr16	84208446	rs111554344	AT	A	7506.73	.	AC=1;AF=0.500;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	0/1:236,195:0.45:431
chr16	84208495	rs62049864	T	C	1615.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:95,68:0.42:163
chr16	84209498	rs4782899	T	C	3576.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:137,162:0.54:299
chr16	84209634	rs2288019	C	G	6554.77	.	AC=1;AF=0.500;AN=2;DB;DP=576;set=Intersection	GT:AD:AF:DP	0/1:274,298:0.52:572
chr16	84209738	rs2288020	T	C	6171.77	.	AC=1;AF=0.500;AN=2;DB;DP=514;set=Intersection	GT:AD:AF:DP	0/1:216,290:0.57:506
chr16	84209816	rs2288022	T	C	6934.77	.	AC=1;AF=0.500;AN=2;DB;DP=575;set=Intersection	GT:AD:AF:DP	0/1:255,316:0.55:571
chr16	84209864	rs2288023	G	C	4574.77	.	AC=1;AF=0.500;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	0/1:184,209:0.53:393
chr16	84211483	rs8692	C	T	3066.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:136,144:0.51:280
chr16	84211969	rs3208968	A	C	6891.77	.	AC=1;AF=0.500;AN=2;DB;DP=531;set=Intersection	GT:AD:AF:DP	0/1:210,317:0.60:527
chr16	84212571	rs1804500	C	A	1299.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:60,61:0.50:121
chr16	84213114	rs2230130	C	T	3967.77	.	AC=1;AF=0.500;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	0/1:165,180:0.52:345
chr16	84213434	rs2230129	A	T	5674.77	.	AC=1;AF=0.500;AN=2;DB;DP=573;set=Intersection	GT:AD:AF:DP	0/1:282,278:0.50:560
chr16	84213541	rs3217259	A	AC	11850.73	.	AC=1;AF=0.500;AN=2;DB;DP=788;set=Intersection	GT:AD:AF:DP	0/1:339,424:0.56:763
chr16	84213652	rs4150168	G	A	4892.77	.	AC=1;AF=0.500;AN=2;DB;DP=520;set=Intersection	GT:AD:AF:DP	0/1:260,241:0.48:501
chr16	84213748	rs2278042	C	T	4591.77	.	AC=1;AF=0.500;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	0/1:218,224:0.51:442
chr16	84213965	rs2278043	G	A	2759.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:167,141:0.46:308
chr16	84214837	rs2303234	G	C	8943.77	.	AC=1;AF=0.500;AN=2;DB;DP=776;set=Intersection	GT:AD:AF:DP	0/1:346,414:0.54:760
chr16	84215133	rs4150149	C	T	7814.77	.	AC=1;AF=0.500;AN=2;DB;DP=683;set=Intersection	GT:AD:AF:DP	0/1:306,359:0.54:665
chr16	84215314	rs3815814	T	C	9244.77	.	AC=1;AF=0.500;AN=2;DB;DP=934;set=Intersection	GT:AD:AF:DP	0/1:476,442:0.48:918
chr16	84215390	rs2230127	T	C	9649.77	.	AC=1;AF=0.500;AN=2;DB;DP=949;set=Intersection	GT:AD:AF:DP	0/1:468,476:0.50:944
chr16	84215692	rs2303237	C	T	12297.77	.	AC=1;AF=0.500;AN=2;DB;DP=1174;set=Intersection	GT:AD:AF:DP	0/1:567,595:0.51:1162
chr16	84217062	rs4782591	C	T	12770.77	.	AC=2;AF=1.00;AN=2;DB;DP=493;set=Intersection	GT:AD:AF:DP	1/1:0,486:1.00:486
chr16	84224805	rs8044351	G	C	4199.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr16	84224967	rs8044695	G	A	4819.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr16	84225327	rs8049081	C	G	4758.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr16	84228199	rs11864937	G	T	3417.77	.	AC=1;AF=0.500;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	0/1:266,178:0.40:444
chr16	84228237	rs11646787	A	C	8448.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr16	84228279	rs35446963	G	A	2483.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:55,101:0.65:156
chr16	84228305	rs11864916	C	G	900.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:62,37:0.37:99
chr16	84228612	rs35353940	CT	C	34209.73	.	AC=2;AF=1.00;AN=2;DB;DP=956;set=Intersection	GT:AD:AF:DP	1/1:0,929:1.00:929
chr16	84228770	rs11149631	G	C	6875.77	.	AC=1;AF=0.500;AN=2;DB;DP=709;set=Intersection	GT:AD:AF:DP	0/1:363,333:0.48:696
chr16	84228873	rs11865115	C	T	7908.77	.	AC=1;AF=0.500;AN=2;DB;DP=662;set=Intersection	GT:AD:AF:DP	0/1:294,366:0.55:660
chr16	84229436	rs62049905	G	A	3935.77	.	AC=1;AF=0.500;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	0/1:197,181:0.48:378
chr16	84229559	rs2303238	T	C	11913.77	.	AC=2;AF=1.00;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	1/1:0,436:1.00:436
chr16	84229580	rs2303239	C	T	4229.77	.	AC=1;AF=0.500;AN=2;DB;DP=448;set=Intersection	GT:AD:AF:DP	0/1:243,198:0.45:441
chr16	84230067	.	GCAACCCCTTCGCT	G	2962	.	AC=1;AF=0.500;AN=2;BRF=0.26;FR=0.5000;HP=2;HapScore=1;MGOF=11;MMLQ=24;MQ=60.44;NF=14;NR=15;PP=2962;QD=20;SC=TAATCCCAGCGCAACCCCTTC;SbPval=0.39;Source=Platypus;TC=89;TCF=38;TCR=51;TR=29;WE=84230091;WS=84230057;set=Platypus	GT:AD:AF:DP	1/0:60,29:0.33:89
chr16	84230082	.	AACCCCTTC	A	2392.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.899;ClippingRankSum=0.000;DP=141;ExcessHet=3.0103;FS=0.627;MLEAC=1;MLEAF=0.500;MQ=60.38;MQRankSum=2.292;QD=17.21;ReadPosRankSum=-0.350;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:70,69:0.50:139
chr16	84230091	.	GCTCAA	G	2395.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=4.332;ClippingRankSum=0.000;DP=141;ExcessHet=3.0103;FS=2.143;MLEAC=1;MLEAF=0.500;MQ=60.38;MQRankSum=2.308;QD=17.11;ReadPosRankSum=0.189;SOR=0.498;set=HC	GT:AD:AF:DP	0/1:71,69:0.49:140
chr16	84230096	.	A	G	962	.	AC=1;AF=0.500;AN=2;BRF=0.26;FR=0.5000;HP=4;HapScore=1;MGOF=69;MMLQ=24;MQ=60.42;NF=30;NR=23;PP=962;QD=18.8070040103;SC=CCTTCGCTCAACCCCTTCCTA;SbPval=0.5;Source=Platypus;TC=114;TCF=66;TCR=48;TR=53;WE=84230104;WS=84230076;set=Platypus	GT:AD:AF:DP	0/1:61,53:0.46:114
chr16	84230257	rs200997815	G	A	5103.77	.	AC=1;AF=0.500;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	0/1:204,235:0.54:439
chr16	84230376	rs2303242	T	C	2876.77	.	AC=1;AF=0.500;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	0/1:274,160:0.37:434
chr16	84230500	rs2303243	A	C	2285.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:165,120:0.42:285
chr16	84255769	rs12920249	G	A	1727.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:90,83:0.48:173
chr16	84255809	rs56796255	T	C	3549.77	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:150,169:0.53:319
chr16	84256103	rs35649980	C	T	5171.77	.	AC=1;AF=0.500;AN=2;DB;DP=535;set=Intersection	GT:AD:AF:DP	0/1:280,249:0.47:529
chr16	84256410	rs7196482	C	T	6660.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.153;ClippingRankSum=0.000;DB;DP=585;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.54;ReadPosRankSum=-3.849;SOR=0.761;set=HC	GT:AD:AF:DP	0/1:271,306:0.53:577
chr16	84256411	rs147997404	G	A	9893.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.859;ClippingRankSum=0.000;DB;DP=581;ExcessHet=3.0103;FS=0.518;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.27;ReadPosRankSum=3.726;SOR=0.640;set=HC	GT:AD:AF:DP	0/1:303,270:0.47:573
chr16	84256422	rs4782905	C	T	9963.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.822;ClippingRankSum=0.000;DB;DP=559;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.99;ReadPosRankSum=2.682;SOR=0.603;set=HC	GT:AD:AF:DP	0/1:293,261:0.47:554
chr16	84270381	rs244811	G	A	8998.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,326:1.00:326
chr16	84271193	rs11647665	C	T	3463.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:165,158:0.49:323
chr16	84328752	rs369797	G	T	10240.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.76;SOR=1.510;set=HC	GT:AD:AF:DP	1/1:0,234:1.00:234
chr16	84328756	rs401782	G	C	10027.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.58;SOR=1.577;set=HC	GT:AD:AF:DP	1/1:0,220:1.00:220
chr16	84328826	rs429725	A	G	1643.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr16	84357925	rs244786	G	T	2422.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr16	84358121	rs244787	A	C	2407.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:1,94:0.99:95
chr16	84360451	rs146306882	A	C	4336.77	.	AC=1;AF=0.500;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	0/1:155,198:0.56:353
chr16	84431973	rs12148971	C	T	1745.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr16	84438415	rs35653774	CT	C	79.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.806;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=26.776;MLEAC=1;MLEAF=0.500;MQ=60.57;MQRankSum=0.775;QD=4.69;ReadPosRankSum=-0.650;SOR=5.131;set=HC	GT:AD:AF:DP	0/1:5,12:0.71:17
chr16	84438505	rs61740804	C	T	2544.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.109;ClippingRankSum=0.000;DB;DP=259;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=-0.896;QD=9.86;ReadPosRankSum=1.029;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:142,116:0.45:258
chr16	84438512	rs11149650	G	A	9742.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:1,280:1.00:281
chr16	84444113	rs2291006	C	T	491.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:34,22:0.39:56
chr16	84444349	rs247818	A	C	10179.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	1/1:0,373:1.00:373
chr16	84455961	rs2288573	A	G	5890.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr16	84456642	rs247814	G	A	1143.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:60,52:0.46:112
chr16	84456705	rs185063	C	T	2992.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:100,137:0.58:237
chr16	84459424	rs1891	C	G	2609.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:111,119:0.52:230
chr16	84459512	rs1887	G	C	1219.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr16	84472787	rs62640931	C	T	553.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:8,23:0.74:31
chr16	84473004	rs3085208	C	CTT	8720.73	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr16	84473137	rs247904	G	C	6221.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr16	84473192	rs931077	A	G	5068.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.70;SOR=1.757;set=HC	GT:AD:AF:DP	1/1:0,116:1.00:116
chr16	84473195	rs247903	T	A	5036.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.38;SOR=1.786;set=HC	GT:AD:AF:DP	1/1:0,111:1.00:111
chr16	84474614	rs2303852	C	A	1098.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:61,54:0.47:115
chr16	84476200	rs247897	A	T	4757.77	.	AC=1;AF=0.500;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	0/1:179,219:0.55:398
chr16	84481995	rs247891	T	C	1079.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr16	84485573	rs247885	C	A	12337.77	.	AC=2;AF=1.00;AN=2;DB;DP=466;set=Intersection	GT:AD:AF:DP	1/1:0,458:1.00:458
chr16	84485749	rs12149888	C	T	3400.77	.	AC=1;AF=0.500;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	0/1:159,159:0.50:318
chr16	84485817	rs72806637	A	G	1134.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:63,51:0.45:114
chr16	84486867	rs2435172	A	G	10896.77	.	AC=2;AF=1.00;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	1/1:1,417:1.00:418
chr16	84488691	rs72806642	G	A	1159.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:78,52:0.40:130
chr16	84488734	rs79006868	C	G	734.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:46,33:0.42:79
chr16	84492683	rs693552	A	C	830.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:56,38:0.40:94
chr16	84493032	rs3743654	C	T	5652.77	.	AC=1;AF=0.500;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	0/1:175,248:0.59:423
chr16	84493080	rs3743655	A	G	4380.77	.	AC=1;AF=0.500;AN=2;DB;DP=489;set=Intersection	GT:AD:AF:DP	0/1:273,215:0.44:488
chr16	84493144	rs410388	C	G	10183.77	.	AC=2;AF=1.00;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	1/1:0,369:1.00:369
chr16	84493216	rs377261	T	C	1320.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:77,65:0.46:142
chr16	84493927	rs35858301	G	A	862.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:21,40:0.66:61
chr16	84493954	.	G	GA	1892.73	.	AC=1;AF=0.500;AN=2;DP=91;set=Intersection	GT:AD:AF:DP	0/1:34,56:0.62:90
chr16	84494020	rs393515	G	T	4577.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr16	84494252	rs72806651	C	T	5530.77	.	AC=1;AF=0.500;AN=2;DB;DP=554;set=Intersection	GT:AD:AF:DP	0/1:287,263:0.48:550
chr16	84494275	rs2241640	C	T	6410.77	.	AC=1;AF=0.500;AN=2;DB;DP=565;set=Intersection	GT:AD:AF:DP	0/1:268,293:0.52:561
chr16	84494450	rs381467	G	A	1786.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:105,81:0.44:186
chr16	84495224	rs369750	A	G	2211.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:149,113:0.43:262
chr16	84495761	rs34205686	G	C	1302.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:48,60:0.56:108
chr16	84495770	rs2241639	G	A	1118.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:55,43:0.44:98
chr16	84497186	rs2241634	C	T	3595.77	.	AC=1;AF=0.500;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	0/1:203,167:0.45:370
chr16	84513463	rs899250	T	G	400.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:18,16:0.47:34
chr16	84513562	rs34628943	G	A	1999.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:74,95:0.56:169
chr16	84514341	rs444170	A	G	3600.77	.	AC=1;AF=0.500;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	0/1:225,181:0.45:406
chr16	84516309	rs433293	G	A	5879.77	.	AC=1;AF=0.500;AN=2;DB;DP=569;set=Intersection	GT:AD:AF:DP	0/1:280,284:0.50:564
chr16	84520223	rs431629	A	T	1590.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:66,72:0.52:138
chr16	84520325	rs431389	T	C	4783.77	.	AC=1;AF=0.500;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	0/1:234,220:0.48:454
chr16	84520396	rs422145	A	G	11348.77	.	AC=2;AF=1.00;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	1/1:0,417:1.00:417
chr16	84520537	rs431818	T	C	8227.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr16	84520780	rs378384	G	C	906.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr16	84522867	rs422918	C	A	1216.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:71,55:0.44:126
chr16	84522897	rs436278	G	C	1806.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:131,85:0.39:216
chr16	84528235	rs62050761	T	C	1107.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:41,43:0.51:84
chr16	84528293	rs2082037	C	T	3059.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:118,140:0.54:258
chr16	84528317	rs2435171	G	C	9737.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:0,351:1.00:351
chr16	84531015	rs62050764	A	C	1373.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:61,62:0.50:123
chr16	84531307	rs442288	G	C	337.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:19,16:0.46:35
chr16	84531780	rs501782	T	C	897.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:45,39:0.46:84
chr16	84600347	rs247860	T	C	758.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:33,33:0.50:66
chr16	84623989	rs2288584	T	C	419.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:33,18:0.35:51
chr16	84690467	rs72797510	C	T	2066.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:60,79:0.57:139
chr16	84691044	rs3751762	C	T	14743.77	.	AC=1;AF=0.500;AN=2;DB;DP=1276;set=Intersection	GT:AD:AF:DP	0/1:590,668:0.53:1258
chr16	84693675	rs2303230	C	T	704.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:14,29:0.67:43
chr16	84733804	.	C	G	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;ClippingRankSum=-0.000;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.95;ReadPosRankSum=-1.036;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr16	84774022	rs12448489	G	A	2050.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:180,111:0.38:291
chr16	84774120	rs4510001	T	C	418.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:66,27:0.29:93
chr16	84778222	rs3751759	G	A	4436.77	.	AC=1;AF=0.500;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	0/1:227,215:0.49:442
chr16	84778762	rs4553618	C	T	6066.77	.	AC=1;AF=0.500;AN=2;DB;DP=696;set=Intersection	GT:AD:AF:DP	0/1:389,303:0.44:692
chr16	84779248	rs7185949	T	G	3719.77	.	AC=1;AF=0.500;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	0/1:207,175:0.46:382
chr16	84792428	rs7202832	C	T	3551.77	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:155,167:0.52:322
chr16	84793261	rs3764333	A	G	661.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:17,25:0.60:42
chr16	84796603	rs12932018	A	G	2508.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:134,112:0.46:246
chr16	84796864	rs35594082	A	C	1134.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:50,55:0.52:105
chr16	84797637	rs3213810	T	A	5264.77	.	AC=1;AF=0.500;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	0/1:174,250:0.59:424
chr16	84808824	rs774298	C	G	6436.77	.	AC=1;AF=0.500;AN=2;DB;DP=558;set=Intersection	GT:AD:AF:DP	0/1:257,294:0.53:551
chr16	84808900	rs774299	G	A	5951.77	.	AC=1;AF=0.500;AN=2;DB;DP=557;set=Intersection	GT:AD:AF:DP	0/1:267,288:0.52:555
chr16	84808969	rs2303232	G	C	6961.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr16	84808984	rs774300	T	C	5640.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr16	84872051	rs1546124	G	C	1296.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:48,53:0.52:101
chr16	84879286	rs12931881	G	A	3475.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:105,153:0.59:258
chr16	84879324	rs12051168	T	C	5492.77	.	AC=1;AF=0.500;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	0/1:183,256:0.58:439
chr16	84879464	rs12051468	A	G	5249.77	.	AC=1;AF=0.500;AN=2;DB;DP=508;set=Intersection	GT:AD:AF:DP	0/1:249,251:0.50:500
chr16	84882911	rs4783086	T	C	601.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:53,30:0.36:83
chr16	84882974	rs4783087	C	A	903.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:95,49:0.34:144
chr16	84883102	rs8061351	C	T	1959.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:145,107:0.42:252
chr16	84883195	rs140532417	A	ATTG	822.73	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:49,24:0.33:73
chr16	84884072	rs4782673	T	G	1796.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:131,96:0.42:227
chr16	84884116	rs4783090	A	G	3214.77	.	AC=1;AF=0.500;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	0/1:223,164:0.42:387
chr16	84888295	rs4782674	C	T	1444.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:82,63:0.43:145
chr16	84888310	rs4782675	C	T	2025.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:116,92:0.44:208
chr16	84888519	rs72337724	TAAAG	T	7949.73	.	AC=1;AF=0.500;AN=2;DB;DP=495;MQ=60.02;set=Intersection	GT:AD:AF:DP	0/1:249,209:0.46:458
chr16	84888541	rs2646127	T	C	3487.77	.	AC=1;AF=0.500;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	0/1:197,173:0.47:370
chr16	84888597	rs2646126	C	G	1724.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:70,75:0.52:145
chr16	84902353	rs4782676	G	A	3165.77	.	AC=1;AF=0.500;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	0/1:232,162:0.41:394
chr16	84902549	rs796487	A	G	3065.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:150,141:0.48:291
chr16	84906098	rs721005	C	G	3076.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:109,143:0.57:252
chr16	84906820	rs2934490	T	C	1579.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:29,71:0.71:100
chr16	84907450	rs2968143	G	A	1510.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:53,63:0.54:116
chr16	84907499	rs10600678	GTT	G,GT	2925.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.057;ClippingRankSum=0.000;DB;DP=292;ExcessHet=3.0103;FS=0.654;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.04;MQRankSum=0.483;QD=11.30;ReadPosRankSum=-0.248;SOR=0.783;set=HC	GT:AD:AF:DP	1/2:41,110,108:0.42,0.42:259
chr16	84907503	.	T	G	323.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.549;ClippingRankSum=0.000;DP=288;ExcessHet=3.0103;FS=1.717;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=-0.565;QD=1.19;ReadPosRankSum=1.827;SOR=0.827;set=HC	GT:AD:AF:DP	0/1:204,67:0.25:271
chr16	84907670	rs2934486	G	C	9736.77	.	AC=2;AF=1.00;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	1/1:0,353:1.00:353
chr16	84911195	rs2244486	G	C	2333.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:58,68:0.54:126
chr16	84911219	rs2244487	G	A	1939.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:43,49:0.53:92
chr16	84914299	rs59111100	A	AAATT	1665.73	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:41,44:0.52:85
chr16	84922859	rs767050	C	T	10532.77	.	AC=2;AF=1.00;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	1/1:1,383:1.00:384
chr16	84940479	rs1874008	T	C	1066.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:40,50:0.56:90
chr16	85009970	rs7195377	A	G	7489.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr16	85011423	rs57465878	CA	C	524.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr16	85011480	rs8045409	T	C	1239.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr16	85011622	rs8044638	G	A	2577.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr16	85015541	rs16975086	G	A	2404.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:145,121:0.45:266
chr16	85023855	rs931713	C	T	12412.77	.	AC=2;AF=1.00;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	1/1:0,442:1.00:442
chr16	85105296	rs12445079	C	T	461.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:10,19:0.66:29
chr16	85105554	rs8058770	A	C	2586.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:92,115:0.56:207
chr16	85105643	rs12597135	C	T	567.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:34,28:0.45:62
chr16	85106500	rs7184546	C	G	3297.77	.	AC=1;AF=0.500;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	0/1:190,170:0.47:360
chr16	85109328	rs16975200	A	G	816.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:24,38:0.61:62
chr16	85112002	rs2291967	T	G	15212.77	.	AC=2;AF=1.00;AN=2;DB;DP=568;set=Intersection	GT:AD:AF:DP	1/1:4,556:0.99:560
chr16	85112068	rs2291966	C	G	3061.77	.	AC=1;AF=0.500;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	0/1:258,157:0.38:415
chr16	85112097	rs12932461	C	G	4173.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;MQ=59.99;set=Intersection	GT:AD:AF:DP	0/1:118,177:0.60:295
chr16	85120500	rs7206590	C	T	1906.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.273;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.77;ReadPosRankSum=0.857;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:24,50:0.68:74
chr16	85120609	rs2291962	A	G	8527.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:0,326:1.00:326
chr16	85133872	rs3764278	G	C	3463.77	.	AC=1;AF=0.500;AN=2;DB;DP=375;MQ=59.98;set=Intersection	GT:AD:AF:DP	0/1:186,181:0.49:367
chr16	85138905	rs72807606	G	C	833.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:50,35:0.41:85
chr16	85139173	rs8050910	G	T	3052.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:137,145:0.51:282
chr16	85688341	rs12447680	C	T	1810.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:114,78:0.41:192
chr16	85689982	.	GGAGCGC	G	4287.73	.	AC=1;AF=0.500;AN=2;DP=283;set=Intersection	GT:AD:AF:DP	0/1:105,116:0.52:221
chr16	85690338	rs4843185	G	A	674.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:27,34:0.56:61
chr16	85690878	rs34805959	C	CA	9078.73	.	AC=1;AF=0.500;AN=2;DB;DP=535;set=Intersection	GT:AD:AF:DP	0/1:234,288:0.55:522
chr16	85691293	rs12444392	C	T	865.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.822;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=1.455;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.14;ReadPosRankSum=0.238;SOR=0.877;set=HC	GT:AD:AF:DP	0/1:93,48:0.34:141
chr16	85691293	.	CA	TG	398	.	AC=1;AF=0.500;AN=2;BRF=0.36;FR=0.5000;HP=2;HapScore=1;MGOF=1;MMLQ=28;MQ=60.0;NF=10;NR=23;PP=398;QD=13.6808446928;SC=CCTGTTTGCCCAACATCCTGC;SbPval=0.68;Source=Platypus;TC=99;TCF=33;TCR=66;TR=33;WE=85691302;WS=85691283;set=Platypus	GT:AD:AF:DP	0/1:66,33:0.33:99
chr16	85691294	rs7404958	A	G	4683.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.46;SOR=1.296;set=HC	GT:AD:AF:DP	1/1:0,140:1.00:140
chr16	85706047	rs9940601	A	C	8043.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr16	85712105	rs3815795	C	T	1338.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr16	85720945	rs3815796	C	T	2177.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:116,98:0.46:214
chr16	85720955	rs3815797	G	A	3375.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:124,144:0.54:268
chr16	85721297	rs9930592	T	A	3836.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr16	85722355	rs2303204	GC	TT	4007.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;JOINED;set=Intersection	GT:AD:AF:DP	0/1:97,103:0.52:200
chr16	85722560	rs58171120	C	G	2991.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:105,135:0.56:240
chr16	85743732	rs2305357	C	G	1999.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr16	85768717	rs1862733	C	T	2773.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:177,132:0.43:309
chr16	85775049	rs139618767	G	A	1179.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:25,46:0.65:71
chr16	85775064	rs388855	A	G	3111.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr16	85775097	rs72803098	G	C	931.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:87,45:0.34:132
chr16	85775175	rs446444	G	A	9721.77	.	AC=2;AF=1.00;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	1/1:0,371:1.00:371
chr16	85813231	rs8587	A	C	2668.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr16	85813526	rs301163	G	A	686.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr16	85813880	rs301164	T	C	2244.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr16	85813963	rs301165	C	T	7563.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr16	85814899	rs3081701	T	TAGTC	29399.73	.	AC=2;AF=1.00;AN=2;DB;DP=684;set=Intersection	GT:AD:AF:DP	1/1:0,657:1.00:657
chr16	85814995	rs301166	A	G	12179.77	.	AC=2;AF=1.00;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	1/1:2,447:1.00:449
chr16	85815074	rs301167	C	T	2963.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr16	85838093	rs2599088	G	A	419.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr16	85838115	rs2733963	G	A	440.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr16	85838166	rs2599089	G	A	763.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr16	85838195	rs2733964	A	C	965.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr16	85838503	rs2599090	T	C	1948.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr16	85838532	rs2733965	A	G	3182.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr16	85838653	rs2599091	T	C	5439.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr16	85838804	rs11419687	G	GA	3337.73	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr16	85839140	rs2599092	T	C	3948.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr16	85839186	rs2733966	C	T	7601.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr16	85839211	rs2075532	G	C	10284.77	.	AC=2;AF=1.00;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	1/1:0,365:1.00:365
chr16	85839543	rs2641797	C	G	5202.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr16	85839977	rs2075553	G	C	3836.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr16	85840035	rs5818557	CA	C	13340.73	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr16	85953845	.	CTTT	C	292.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.674;ClippingRankSum=-0.000;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=-0.000;QD=20.91;ReadPosRankSum=-1.645;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:1,13:0.93:14
chr16	86369298	rs12448286	G	A	717.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:20,30:0.60:50
chr16	86369368	rs2581295	G	A	3791.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr16	86369500	rs150378865	TAATG	T	6300.73	.	AC=1;AF=0.500;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	0/1:136,162:0.54:298
chr16	86371037	rs61744045	G	A	4319.77	.	AC=1;AF=0.500;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	0/1:161,200:0.55:361
chr16	86565537	rs56017283	C	G	556.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr16	86565826	rs3751803	C	G	10734.77	.	AC=2;AF=1.00;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	1/1:1,410:1.00:411
chr16	86566039	rs3751801	C	T	8600.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.56;SOR=0.958;set=HC	GT:AD:AF:DP	1/1:0,193:1.00:193
chr16	86566042	rs3751800	G	A	8700.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.17;SOR=0.952;set=HC	GT:AD:AF:DP	1/1:0,197:1.00:197
chr16	86574897	rs34551811	TA	T	450.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.390;ClippingRankSum=0.000;DB;DP=289;ExcessHet=3.0103;FS=2.592;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=2.620;QD=1.99;ReadPosRankSum=-0.209;SOR=0.961;set=HC	GT:AD:AF:DP	0/1:154,73:0.32:227
chr16	86575460	rs3213418	C	G	11398.77	.	AC=2;AF=1.00;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	1/1:0,412:1.00:412
chr16	86575737	rs3829533	C	T	9852.77	.	AC=2;AF=1.00;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	1/1:0,369:1.00:369
chr16	86575992	rs55782369	G	T	2244.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr16	86585905	rs8046613	C	A	9796.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:0,348:1.00:348
chr16	86588655	rs2354022	G	C	21061.77	.	AC=2;AF=1.00;AN=2;DB;DP=784;set=Intersection	GT:AD:AF:DP	1/1:0,781:1.00:781
chr16	86588993	rs3751796	T	C	7087.77	.	AC=1;AF=0.500;AN=2;DB;DP=601;set=Intersection	GT:AD:AF:DP	0/1:278,320:0.54:598
chr16	87339278	rs11646030	T	C	877.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:31,33:0.52:64
chr16	87349333	rs6540037	A	G	4305.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr16	87349489	rs7193801	A	G	6390.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr16	87349529	rs7198660	T	C	5688.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.89;QD=36.70;SOR=1.448;set=HC	GT:AD:AF:DP	1/1:0,155:1.00:155
chr16	87349529	.	TAATA	CAATA,CAATG	1069	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.37;FR=0.5000,0.5000;HP=4;HapScore=2;MGOF=24;MMLQ=25;MQ=59.9;NF=35,15;NR=80,41;PP=778,1069;QD=7.06757576128;SC=TGACTCTTAATAATAAAGCCC;SbPval=0.53;Source=Platypus;TC=115;TCF=35;TCR=80;TR=115,56;WE=87349541;WS=87349519;set=Platypus	GT:AF:DP	0/1:1.00:115
chr16	87349533	rs2277850	A	G	1916.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.819;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=0.670;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=0.000;QD=13.69;ReadPosRankSum=0.213;SOR=0.623;set=HC	GT:AD:AF:DP	0/1:61,79:0.56:140
chr16	87350773	rs3748393	C	A	4856.77	.	AC=1;AF=0.500;AN=2;DB;DP=522;set=Intersection	GT:AD:AF:DP	0/1:276,235:0.46:511
chr16	87350908	rs112505167	C	T	4855.77	.	AC=1;AF=0.500;AN=2;DB;DP=555;set=Intersection	GT:AD:AF:DP	0/1:304,245:0.45:549
chr16	87350997	rs4843592	A	G	5602.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr16	87376605	rs2303763	C	T	2540.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:169,129:0.43:298
chr16	87376623	rs4843237	C	G	7249.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr16	87377455	rs2303764	G	C	1409.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:99,74:0.43:173
chr16	87416903	rs8058715	A	T	1461.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr16	87426028	rs8043569	T	C	3428.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr16	87436382	rs8044820	G	A	1387.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr16	87436720	rs1054521	G	T	11000.77	.	AC=2;AF=1.00;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	1/1:0,408:1.00:408
chr16	87436764	rs1054528	A	G	7177.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr16	87445363	rs1050846	G	A	11556.77	.	AC=2;AF=1.00;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	1/1:1,418:1.00:419
chr16	87445839	rs3748400	C	T	6647.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:3,245:0.99:248
chr16	87446053	rs2042395	G	A	11825.77	.	AC=2;AF=1.00;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	1/1:0,422:1.00:422
chr16	87452546	rs4240794	C	A	10293.77	.	AC=2;AF=1.00;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	1/1:0,375:1.00:375
chr16	87452584	rs8046992	C	T	5592.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr16	87453342	.	G	GT	79.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.578;ClippingRankSum=0.000;DP=214;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=2.143;QD=0.41;ReadPosRankSum=0.150;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:158,35:0.18:193
chr16	87637893	.	CCTGCTGCTG	C,CCTGCTGCTGCTGCTG	8634.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=334;set=Intersection	GT:AF:DP	1/2:0.47,0.52:218
chr16	87638576	rs145223680	G	A	2632.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:100,124:0.55:224
chr16	87677791	rs918367	A	C	8938.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:1,312:1.00:313
chr16	87678144	rs918368	T	C	26396.77	.	AC=2;AF=1.00;AN=2;DB;DP=979;set=Intersection	GT:AD:AF:DP	1/1:0,966:1.00:966
chr16	87678249	rs9934222	G	A	28213.77	.	AC=2;AF=1.00;AN=2;DB;DP=1041;set=Intersection	GT:AD:AF:DP	1/1:2,1021:1.00:1023
chr16	87678441	rs8051448	C	T	9226.77	.	AC=1;AF=0.500;AN=2;DB;DP=778;set=Intersection	GT:AD:AF:DP	0/1:355,413:0.54:768
chr16	87723838	rs34767155	T	C	6693.77	.	AC=1;AF=0.500;AN=2;DB;DP=705;set=Intersection	GT:AD:AF:DP	0/1:383,316:0.45:699
chr16	87728814	.	T	G	1336.77	.	AC=1;AF=0.500;AN=2;DP=123;set=Intersection	GT:AD:AF:DP	0/1:55,66:0.55:121
chr16	87729256	rs72810189	T	C	4692.77	.	AC=1;AF=0.500;AN=2;DB;DP=624;MQ=60.07;set=Intersection	GT:AD:AF:DP	0/1:378,240:0.39:618
chr16	87729334	rs34111279	C	CA	7502.73	.	AC=1;AF=0.500;AN=2;DB;DP=673;MQ=60.06;set=Intersection	GT:AD:AF:DP	0/1:420,245:0.37:665
chr16	87734747	rs35750555	C	G	155.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:11,7:0.39:18
chr16	87735527	rs7199037	G	A	4616.77	.	AC=1;AF=0.500;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	0/1:249,221:0.47:470
chr16	87741662	rs2290019	C	A	3690.77	.	AC=1;AF=0.500;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	0/1:226,174:0.43:400
chr16	87742092	rs2290018	G	A	6940.77	.	AC=1;AF=0.500;AN=2;DB;DP=609;set=Intersection	GT:AD:AF:DP	0/1:269,330:0.55:599
chr16	87742129	rs2290017	G	A	3460.77	.	AC=1;AF=0.500;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	0/1:219,165:0.43:384
chr16	87748198	rs2081981	G	C	7329.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr16	87760337	rs67926154	A	C	1305.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr16	87764267	rs9934565	A	T	6799.77	.	AC=1;AF=0.500;AN=2;DB;DP=626;set=Intersection	GT:AD:AF:DP	0/1:293,320:0.52:613
chr16	87764403	rs34481270	C	G	700.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:48,32:0.40:80
chr16	87782182	rs56031151	A	T	744.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:69,38:0.36:107
chr16	87782396	rs34779002	C	A	1862.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:142,97:0.41:239
chr16	87788756	rs2303770	A	G	457.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:32,23:0.42:55
chr16	87788836	rs17699859	G	A	1366.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:106,70:0.40:176
chr16	87788864	rs2303771	G	A	1793.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:133,92:0.41:225
chr16	87795580	rs2303772	G	C	3596.77	.	AC=1;AF=0.500;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	0/1:212,178:0.46:390
chr16	87870312	rs12444670	C	T	2789.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:123,129:0.51:252
chr16	87870379	rs16943320	A	G	1007.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:26,37:0.59:63
chr16	87871366	rs3815559	G	C	470.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:44,24:0.35:68
chr16	87871582	rs2287120	G	A	3251.77	.	AC=1;AF=0.500;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	0/1:244,168:0.41:412
chr16	87871714	rs2287121	T	G	834.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:41,36:0.47:77
chr16	87872488	rs2287122	G	A	1224.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:58,55:0.49:113
chr16	87873442	rs33992624	C	G	4006.77	.	AC=1;AF=0.500;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	0/1:149,189:0.56:338
chr16	87873577	rs12927136	A	G	808.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:25,34:0.58:59
chr16	87874107	rs113883650	TATATG	T	5027.73	.	AC=1;AF=0.500;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	0/1:222,139:0.39:361
chr16	87874182	rs12931876	T	C	1383.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:104,72:0.41:176
chr16	87874217	rs143021327	TGGGA	T	1800.73	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:48,48:0.50:96
chr16	87903077	rs33996472	G	A	368.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:20,17:0.46:37
chr16	87903082	rs3829509	G	C	468.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:18,20:0.53:38
chr16	87921917	rs149572777	G	A	1149.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:82,56:0.41:138
chr16	87935628	rs73239028	G	C	2677.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:192,142:0.43:334
chr16	87935958	.	CA	C	3566.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.043;ClippingRankSum=0.000;DP=614;ExcessHet=3.0103;FS=4.206;MLEAC=1;MLEAF=0.500;MQ=59.56;MQRankSum=1.151;QD=6.24;ReadPosRankSum=2.378;SOR=1.028;set=HC	GT:AD:AF:DP	0/1:300,272:0.48:572
chr16	87936161	rs4843730	A	G	4504.77	.	AC=1;AF=0.500;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	0/1:220,203:0.48:423
chr16	87960560	rs12922226	A	T	598.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:59,32:0.35:91
chr16	87969777	.	TA	T	841.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.126;ClippingRankSum=0.000;DP=172;ExcessHet=3.0103;FS=0.854;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=1.952;QD=5.57;ReadPosRankSum=0.314;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:60,91:0.60:151
chr16	88008712	rs71156278	C	CT	4115.73	.	AC=2;AF=1.00;AN=2;DB;DP=105;MQ=60.41;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr16	88012150	rs8052854	T	G	923.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr16	88017809	rs3815820	C	T	9255.77	.	AC=2;AF=1.00;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	1/1:0,342:1.00:342
chr16	88052161	rs7499814	C	A	7674.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr16	88066655	rs11641367	A	G	6048.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.91;QD=45.14;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,134:1.00:134
chr16	88066659	rs11646301	C	A	6216.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.22;QD=43.47;SOR=1.345;set=HC	GT:AD:AF:DP	1/1:0,143:1.00:143
chr16	88104956	rs7498497	C	T	2006.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:94,90:0.49:184
chr16	88105725	rs8050209	G	A	2708.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:107,123:0.53:230
chr16	88123598	rs8063486	C	G	9379.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:0,335:1.00:335
chr16	88123697	rs8063654	C	A	7955.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr16	88124525	rs28650772	A	G	2946.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr16	88134285	rs11860533	A	G	4366.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr16	88494947	rs11648572	T	C	32503.77	.	AC=2;AF=1.00;AN=2;DB;DP=1177;set=Intersection	GT:AD:AF:DP	1/1:0,1175:1.00:1175
chr16	88494976	rs11640794	A	C	36371.77	.	AC=2;AF=1.00;AN=2;DB;DP=1334;set=Intersection	GT:AD:AF:DP	1/1:1,1325:1.00:1326
chr16	88495367	rs28723506	G	A	6218.77	.	AC=1;AF=0.500;AN=2;DB;DP=739;set=Intersection	GT:AD:AF:DP	0/1:429,303:0.41:732
chr16	88495407	rs7199961	G	C	18204.77	.	AC=2;AF=1.00;AN=2;DB;DP=644;set=Intersection	GT:AD:AF:DP	1/1:0,638:1.00:638
chr16	88495654	rs12927001	A	G	44267.77	.	AC=2;AF=1.00;AN=2;DB;DP=1671;set=Intersection	GT:AD:AF:DP	1/1:1,1646:1.00:1647
chr16	88495872	rs184583062	C	T	6346.77	.	AC=1;AF=0.500;AN=2;DB;DP=1013;set=Intersection	GT:AD:AF:DP	0/1:623,365:0.37:988
chr16	88496008	rs12918876	T	C	6553.77	.	AC=1;AF=0.500;AN=2;DB;DP=779;set=Intersection	GT:AD:AF:DP	0/1:454,312:0.41:766
chr16	88497031	rs9924504	T	C	13264.77	.	AC=2;AF=1.00;AN=2;DB;DP=499;set=Intersection	GT:AD:AF:DP	1/1:0,496:1.00:496
chr16	88497400	rs9938800	G	A	10317.77	.	AC=2;AF=1.00;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	1/1:0,364:1.00:364
chr16	88497446	rs7197071	A	G	17140.77	.	AC=2;AF=1.00;AN=2;DB;DP=653;set=Intersection	GT:AD:AF:DP	1/1:0,644:1.00:644
chr16	88498221	rs4782300	C	T	37076.77	.	AC=2;AF=1.00;AN=2;DB;DP=1331;set=Intersection	GT:AD:AF:DP	1/1:1,1326:1.00:1327
chr16	88498297	rs12445417	T	G	43670.77	.	AC=2;AF=1.00;AN=2;DB;DP=1634;set=Intersection	GT:AD:AF:DP	1/1:0,1624:1.00:1624
chr16	88499539	rs9931465	C	G	20075.77	.	AC=2;AF=1.00;AN=2;DB;DP=743;set=Intersection	GT:AD:AF:DP	1/1:0,736:1.00:736
chr16	88500348	rs13334190	G	A	4801.77	.	AC=1;AF=0.500;AN=2;DB;DP=530;set=Intersection	GT:AD:AF:DP	0/1:282,236:0.46:518
chr16	88501034	rs12598474	G	C	4783.77	.	AC=1;AF=0.500;AN=2;DB;DP=567;set=Intersection	GT:AD:AF:DP	0/1:325,230:0.41:555
chr16	88502482	rs3812953	C	T	10055.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	1/1:0,376:1.00:376
chr16	88502505	rs1983014	A	G	8229.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr16	88504868	rs904783	A	G	19050.77	.	AC=2;AF=1.00;AN=2;DB;DP=723;set=Intersection	GT:AD:AF:DP	1/1:0,706:1.00:706
chr16	88505635	rs4782301	A	G	26359.77	.	AC=2;AF=1.00;AN=2;DB;DP=966;set=Intersection	GT:AD:AF:DP	1/1:2,956:1.00:958
chr16	88505734	rs4782362	C	T	9373.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:0,332:1.00:332
chr16	88520070	rs113752529	C	T	3627.77	.	AC=1;AF=0.500;AN=2;DB;DP=488;set=Intersection	GT:AD:AF:DP	0/1:287,200:0.41:487
chr16	88555301	rs34251187	C	A	2209.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:114,93:0.45:207
chr16	88593209	rs199766456	CCT	C	443.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.802;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=2.753;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.62;ReadPosRankSum=-0.819;SOR=0.339;set=HC	GT:AD:AF:DP	0/1:42,25:0.37:67
chr16	88593210	rs35678431	CT	C	855.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:27,40:0.60:67
chr16	88599695	rs67712719	GGA	G	12648.73	.	AC=2;AF=1.00;AN=2;DB;DP=310;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.70;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,283:1.00:283
chr16	88599697	.	AG	CC	2947	.	AC=2;AF=1.00;AN=2;BRF=0.51;FR=1.0000;HP=3;HapScore=1;MGOF=2;MMLQ=24;MQ=60.0;NF=57;NR=107;PP=2947;QD=20;SC=GCCAGAGCGGAGCCTCTGGCC;SbPval=0.46;Source=Platypus;TC=172;TCF=58;TCR=114;TR=164;WE=88599712;WS=88599687;set=Platypus	GT:AD:AF:DP	1/1:8,164:0.95:172
chr16	88599699	.	CCTCTGG	C	2965	.	AC=2;AF=1.00;AN=2;BRF=0.51;FR=1.0000;HP=1;HapScore=1;MGOF=2;MMLQ=24;MQ=60.0;NF=15;NR=108;PP=2965;QD=20;SC=CAGAGCGGAGCCTCTGGCCCA;SbPval=0.5;Source=Platypus;TC=125;TCF=15;TCR=110;TR=123;WE=88599712;WS=88599687;set=Platypus	GT:AD:AF:DP	1/1:2,123:0.98:125
chr16	88599700	rs67322929	CT	C	12645.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=282;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.16;SOR=1.195;set=HC	GT:AD:AF:DP	1/1:0,280:1.00:280
chr16	88599702	rs67873604	CTGG	C	12560.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=278;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.51;SOR=1.225;set=HC	GT:AD:AF:DP	1/1:0,276:1.00:276
chr16	88600079	rs13335396	C	G	14047.77	.	AC=2;AF=1.00;AN=2;DB;DP=554;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.92;SOR=0.746;set=HC	GT:AD:AF:DP	1/1:0,542:1.00:542
chr16	88620069	rs2340958	C	A	70.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.321;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=5.787;MLEAC=1;MLEAF=0.500;MQ=60.39;MQRankSum=-0.313;QD=2.62;ReadPosRankSum=0.184;SOR=2.799;set=HC	GT:AD:AF:DP	0/1:23,4:0.15:27
chr16	88620070	rs2340957	C	A	70.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.542;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=5.787;MLEAC=1;MLEAF=0.500;MQ=60.39;MQRankSum=-0.313;QD=2.62;ReadPosRankSum=0.184;SOR=2.799;set=HC	GT:AD:AF:DP	0/1:23,4:0.15:27
chr16	88620148	rs11647546	C	G	254.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.266;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=3.518;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=-0.544;QD=3.15;ReadPosRankSum=-0.433;SOR=1.172;set=HC	GT:AD:AF:DP	0/1:61,20:0.25:81
chr16	88620195	rs2879897	T	G	853.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:100,49:0.33:149
chr16	88633052	rs56983565	G	C	6380.77	.	AC=1;AF=0.500;AN=2;DB;DP=503;set=Intersection	GT:AD:AF:DP	0/1:206,293:0.59:499
chr16	88643457	rs936621	A	G	4288.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr16	88644005	rs899728	A	G	4074.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr16	88664758	rs3887592	T	C	1521.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:140,81:0.37:221
chr16	88666035	rs6500481	G	A	434.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:26,19:0.42:45
chr16	88675177	rs9932685	A	G	1652.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:62,63:0.50:125
chr16	88675194	rs9932692	A	G	4052.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr16	88675529	rs9930974	C	T	2392.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr16	88675550	rs139991487	A	G	727.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:31,29:0.48:60
chr16	88688547	rs1111433	T	C	1135.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:66,53:0.45:119
chr16	88688832	rs3751675	A	G	2669.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:93,123:0.57:216
chr16	88689852	rs2277904	T	C	1005.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:36,41:0.53:77
chr16	88695020	rs111575892	A	G	838.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:32,38:0.54:70
chr16	88695300	rs4782387	C	T	2199.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:149,105:0.41:254
chr16	88695332	rs4782306	G	C	5005.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.54;SOR=2.902;set=HC	GT:AD:AF:DP	1/1:0,137:1.00:137
chr16	88695332	.	GAGACCC	CAGACCC,CAGACCG	1266	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.38;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=16;MMLQ=28;MQ=60.0;NF=21,9;NR=98,35;PP=1266,798;QD=10.9308505256;SC=AGCTGGGTCTGAGACCCCATT;SbPval=0.5;Source=Platypus;TC=120;TCF=21;TCR=99;TR=119,44;WE=88695346;WS=88695322;set=Platypus	GT:AF:DP	0/1:0.99:120
chr16	88695338	rs4782388	C	G	1147.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.866;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=3.325;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.89;ReadPosRankSum=0.504;SOR=0.389;set=HC	GT:AD:AF:DP	0/1:67,49:0.42:116
chr16	88696716	rs147961270	G	T	804.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:37,37:0.50:74
chr16	88697487	rs2291160	G	A	454.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:42,23:0.35:65
chr16	88705804	rs2254073	T	C	1504.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr16	88709712	rs7195830	A	G	1927.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.70;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr16	88709737	rs1049255	C	T	2140.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr16	88709828	rs1049254	A	G	1570.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:4,68:0.94:72
chr16	88712712	.	T	TGCAGACCCAGGGGACGTGTGCGGACCGGGGCTGCAAAGTCTCAGCACAAG	2289.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.169;ClippingRankSum=0.000;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.89;ReadPosRankSum=-2.055;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:66,62:0.48:128
chr16	88712733	rs12926425	C	T	1295.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:67,40:0.37:107
chr16	88712767	rs12933505	A	G	2227.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:67,59:0.47:126
chr16	88712780	rs12933512	A	C	2644.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.093;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=7.908;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.34;ReadPosRankSum=-1.283;SOR=1.487;set=HC	GT:AD:AF:DP	0/1:65,65:0.50:130
chr16	88712780	.	ACA	CCG	2944	.	AC=1;AF=0.500;AN=2;BRF=0.38;FR=0.5000;HP=2;HapScore=4;MGOF=8;MMLQ=24;MQ=60.07;NF=49;NR=19;PP=2944;QD=20;SC=CTTGATGTGGACACTAGCGGC;SbPval=0.6;Source=Platypus;TC=130;TCF=92;TCR=38;TR=68;WE=88712790;WS=88712757;set=Platypus	GT:AD:AF:DP	0/1:62,68:0.52:130
chr16	88712782	rs12709103	A	G	2613.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.878;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=9.498;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.36;ReadPosRankSum=-1.363;SOR=1.567;set=HC	GT:AD:AF:DP	0/1:66,69:0.51:135
chr16	88713236	rs4673	A	G	10613.77	.	AC=1;AF=0.500;AN=2;DB;DP=872;set=Intersection	GT:AD:AF:DP	0/1:375,491:0.57:866
chr16	88713473	rs4782308	G	A	4595.77	.	AC=1;AF=0.500;AN=2;DB;DP=448;set=Intersection	GT:AD:AF:DP	0/1:223,216:0.49:439
chr16	88713501	rs4782393	A	G	6913.77	.	AC=1;AF=0.500;AN=2;DB;DP=682;set=Intersection	GT:AD:AF:DP	0/1:334,322:0.49:656
chr16	88714559	rs2306422	C	T	8703.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr16	88716534	rs3812948	A	G	1244.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr16	88717386	rs8053867	T	C	15059.77	.	AC=2;AF=1.00;AN=2;DB;DP=545;set=Intersection	GT:AD:AF:DP	1/1:0,540:1.00:540
chr16	88719625	rs11648950	A	T	160.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.883;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=1.797;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.57;ReadPosRankSum=-0.750;SOR=1.066;set=HC	GT:AD:AF:DP	0/1:35,10:0.22:45
chr16	88719877	rs12926212	C	G	3539.77	.	AC=1;AF=0.500;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	0/1:149,165:0.53:314
chr16	88721012	rs12935454	G	A	1293.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:54,56:0.51:110
chr16	88722012	rs3736112	C	T	1376.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:61,59:0.49:120
chr16	88723538	rs112485764	T	TG	573.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:11,26:0.70:37
chr16	88724347	rs2279258	G	T	3746.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:142,176:0.55:318
chr16	88729573	rs3794625	C	T	12574.77	.	AC=1;AF=0.500;AN=2;DB;DP=1121;set=Intersection	GT:AD:AF:DP	0/1:519,595:0.53:1114
chr16	88729650	rs11646758	T	C	4864.77	.	AC=1;AF=0.500;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	0/1:235,214:0.48:449
chr16	88752693	rs11076698	T	G	6654.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr16	88762932	rs35639468	CT	C	1136.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.318;ClippingRankSum=0.000;DB;DP=277;ExcessHet=3.0103;FS=1.006;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=1.258;QD=4.26;ReadPosRankSum=-0.963;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:169,98:0.37:267
chr16	88762942	.	TA	T	2564	.	AC=1;AF=0.500;AN=2;BRF=0.52;FR=0.5000;HP=9;HapScore=3;MGOF=3;MMLQ=24;MQ=60.13;NF=25;NR=34;PP=2564;QD=20;SC=CTTTTTTTTTTAAAAAAAAGA;SbPval=0.5;Source=Platypus;TC=158;TCF=65;TCR=93;TR=59;WE=88762951;WS=88762922;set=Platypus	GT:AD:AF:DP	0/1:99,59:0.37:158
chr16	88762943	rs1132579	A	T	2337.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;ClippingRankSum=0.000;DB;DP=303;ExcessHet=3.0103;FS=3.253;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=-2.305;QD=8.26;ReadPosRankSum=2.930;SOR=0.535;set=HC	GT:AD:AF:DP	0/1:138,145:0.51:283
chr16	88763896	rs2879899	G	A	892.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:41,40:0.49:81
chr16	88763958	rs11076700	G	A	2307.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:115,114:0.50:229
chr16	88766168	rs55780854	C	T	5242.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr16	88767769	rs2306049	G	C	6513.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr16	88767861	rs2306048	C	G	1743.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr16	88772491	rs7194105	A	G	1173.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr16	88772746	rs112070238	C	T	2414.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.08;SOR=1.192;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr16	88772963	rs137933845	G	A	1063.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:59,53:0.47:112
chr16	88773528	rs11641194	C	A	21775.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.899;ClippingRankSum=0.000;DB;DP=840;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.11;ReadPosRankSum=-0.686;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:5,829:0.99:834
chr16	88776141	rs4598894	G	A	3156.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.10;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr16	88776148	rs4377140	C	T	3267.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.57;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr16	88776297	rs4390574	T	C	16658.77	.	AC=2;AF=1.00;AN=2;DB;DP=626;set=Intersection	GT:AD:AF:DP	1/1:0,621:1.00:621
chr16	88776499	rs61744010	G	T	7049.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr16	88777995	rs11076704	C	T	7842.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:1,299:1.00:300
chr16	88778133	rs2879902	C	A	6253.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:1,237:1.00:238
chr16	88778422	rs202238363	GGTGAGCGGGGGCCCA	G	14516.73	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:1,326:1.00:327
chr16	88778615	rs7205989	G	A	15918.77	.	AC=2;AF=1.00;AN=2;DB;DP=581;set=Intersection	GT:AD:AF:DP	1/1:0,573:1.00:573
chr16	88778831	rs7201610	C	T	5137.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr16	88779371	.	G	GC	705	.	AC=1;AF=0.500;AN=2;BRF=0.51;FR=0.5000;HP=5;HapScore=1;MGOF=14;MMLQ=24;MQ=47.91;NF=0;NR=21;PP=705;QD=34.8095238095;SC=GCCCCTGAGAGCCCCCTTCCC;SbPval=1.0;Source=Platypus;TC=29;TCF=5;TCR=24;TR=21;WE=88779379;WS=88779361;set=Platypus	GT:AD:AF:DP	1/0:8,21:0.72:29
chr16	88779952	rs74757912	C	CCT	5431.73	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr16	88780023	rs1317756	G	A	7669.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr16	88780472	rs7205626	T	C	7268.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr16	88780518	rs3826076	A	G	11976.77	.	AC=2;AF=1.00;AN=2;DB;DP=479;set=Intersection	GT:AD:AF:DP	1/1:0,466:1.00:466
chr16	88780634	rs11278302	AGGTGTG	A	22052.73	.	AC=2;AF=1.00;AN=2;DB;DP=554;set=Intersection	GT:AD:AF:DP	1/1:1,509:1.00:510
chr16	88780685	rs7191439	C	T	8703.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;MQ=60.03;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr16	88780923	rs8050715	C	G	16027.77	.	AC=2;AF=1.00;AN=2;DB;DP=585;set=Intersection	GT:AD:AF:DP	1/1:0,573:1.00:573
chr16	88781125	rs8043637	T	C	20462.77	.	AC=2;AF=1.00;AN=2;DB;DP=760;set=Intersection	GT:AD:AF:DP	1/1:0,748:1.00:748
chr16	88781419	rs2306046	A	G	7664.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr16	88781614	rs1058158	G	C	6582.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr16	88782319	rs3214887	GC	G	22257.73	.	AC=2;AF=1.00;AN=2;DB;DP=793;set=Intersection	GT:AD:AF:DP	1/1:1,727:1.00:728
chr16	88782676	rs2290902	A	G	7879.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr16	88783100	rs1803382	T	C	21537.77	.	AC=2;AF=1.00;AN=2;DB;DP=823;set=Intersection	GT:AD:AF:DP	1/1:0,810:1.00:810
chr16	88783374	rs8044367	A	G	13727.77	.	AC=2;AF=1.00;AN=2;DB;DP=515;set=Intersection	GT:AD:AF:DP	1/1:0,506:1.00:506
chr16	88783521	rs6500491	T	C	35198.77	.	AC=2;AF=1.00;AN=2;DB;DP=1344;MQ=60.01;set=Intersection	GT:AD:AF:DP	1/1:2,1326:1.00:1328
chr16	88783738	rs4782432	A	G	2969.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr16	88784114	rs11641326	T	C	5155.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr16	88785905	.	G	A	3391.77	.	AC=1;AF=0.500;AN=2;DP=249;set=Intersection	GT:AD:AF:DP	0/1:99,144:0.59:243
chr16	88786967	rs4401037	C	T	9036.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:0,328:1.00:328
chr16	88787607	rs150376294	CCTT	C	22200.73	.	AC=2;AF=1.00;AN=2;DB;DP=514;set=Intersection	GT:AD:AF:DP	1/1:0,502:1.00:502
chr16	88787673	rs35159887	G	A	13241.77	.	AC=2;AF=1.00;AN=2;DB;DP=486;set=Intersection	GT:AD:AF:DP	1/1:0,485:1.00:485
chr16	88787704	rs8043924	G	C	11904.77	.	AC=2;AF=1.00;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	1/1:0,440:1.00:440
chr16	88788477	rs9935872	A	G	2649.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr16	88788903	rs4238687	T	G	8901.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr16	88791458	rs11645197	G	A	3327.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr16	88792047	rs4782430	A	G	6791.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr16	88792097	rs4782429	A	G	4597.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr16	88793068	rs143054492	T	TCAGCGGGGC	7911.73	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr16	88793090	rs4516218	A	G	10951.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr16	88793101	.	T	TG	2967	.	AC=1;AF=0.500;AN=2;BRF=0.52;FR=0.5000;HP=4;HapScore=1;MGOF=33;MMLQ=24;MQ=60.04;NF=62;NR=2;PP=2967;QD=20;SC=GGGCGGTGGGTGCGGGGGGGC;SbPval=1.0;Source=Platypus;TC=151;TCF=118;TCR=33;TR=64;WE=88793111;WS=88793080;set=Platypus	GT:AD:AF:DP	0/1:87,64:0.42:151
chr16	88793103	rs4424896	C	G	10952.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.31;QD=40.57;SOR=2.985;set=HC	GT:AD:AF:DP	1/1:0,270:1.00:270
chr16	88793813	rs8057198	T	C	1222.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr16	88793858	rs2242170	C	T	1782.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr16	88793910	rs2242171	C	T	2894.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.56;SOR=3.452;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr16	88800610	rs79319346	G	T	3121.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:1,106:0.99:107
chr16	88803124	rs13333358	T	C	1912.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:68,89:0.57:157
chr16	88803195	rs4782410	T	C	6616.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr16	88804734	rs7184427	A	G	14866.77	.	AC=2;AF=1.00;AN=2;DB;DP=549;set=Intersection	GT:AD:AF:DP	1/1:1,544:1.00:545
chr16	88804924	rs34600315	TC	T	13243.73	.	AC=2;AF=1.00;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	1/1:1,377:1.00:378
chr16	88808111	rs11076707	T	C	2485.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr16	88808311	.	T	C	865	.	AC=2;AF=1.00;AN=2;BRF=0.33;FR=1.0000;HP=4;HapScore=1;MGOF=35;MMLQ=24;MQ=56.8;NF=24;NR=8;PP=865;QD=28.1178503921;SC=TCTCCAGGTGTGGGTGGGAGC;SbPval=0.62;Source=Platypus;TC=34;TCF=25;TCR=9;TR=32;WE=88808319;WS=88808301;set=Platypus	GT:AD:AF:DP	1/1:2,32:0.94:34
chr16	88808743	rs6500495	A	G	6537.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr16	88808862	rs7201439	C	T	2166.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr16	88808918	rs11648555	C	A	793.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr16	88809368	rs28525359	G	T	15986.77	.	AC=2;AF=1.00;AN=2;DB;DP=574;set=Intersection	GT:AD:AF:DP	1/1:0,571:1.00:571
chr16	88809434	rs9925084	A	G	23597.77	.	AC=2;AF=1.00;AN=2;DB;DP=893;set=Intersection	GT:AD:AF:DP	1/1:1,886:1.00:887
chr16	88809480	rs9925171	A	G	22168.77	.	AC=2;AF=1.00;AN=2;DB;DP=828;set=Intersection	GT:AD:AF:DP	1/1:1,817:1.00:818
chr16	88809686	rs9927855	T	C	23308.77	.	AC=2;AF=1.00;AN=2;DB;DP=860;set=Intersection	GT:AD:AF:DP	1/1:0,851:1.00:851
chr16	88809773	rs8048714	G	C	17775.77	.	AC=2;AF=1.00;AN=2;DB;DP=655;set=Intersection	GT:AD:AF:DP	1/1:0,639:1.00:639
chr16	88809893	rs9933845	GG	AC	18657.77	.	AC=2;AF=1.00;AN=2;DB;DP=424;JOINED;set=Intersection	GT:AD:AF:DP	1/1:1,418:1.00:419
chr16	88810129	rs8053135	A	G	7998.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr16	88815647	rs112962992	C	CA	320.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.393;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=1.542;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.72;ReadPosRankSum=0.702;SOR=0.909;set=HC	GT:AD:AF:DP	0/1:140,46:0.25:186
chr16	88815915	rs145849279	C	T	551.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:39,25:0.39:64
chr16	88851310	rs2911442	A	C	4889.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr16	88870099	rs865103	T	C	11792.77	.	AC=2;AF=1.00;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	1/1:0,411:1.00:411
chr16	88870967	rs475667	T	C	5537.77	.	AC=1;AF=0.500;AN=2;DB;DP=634;set=Intersection	GT:AD:AF:DP	0/1:358,272:0.43:630
chr16	88872145	rs507329	T	C	9018.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:0,333:1.00:333
chr16	88872229	rs480727	A	G	7649.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr16	88872511	rs510862	T	C	13838.77	.	AC=2;AF=1.00;AN=2;DB;DP=528;set=Intersection	GT:AD:AF:DP	1/1:0,521:1.00:521
chr16	88874632	rs572275	C	G	15935.77	.	AC=2;AF=1.00;AN=2;DB;DP=593;set=Intersection	GT:AD:AF:DP	1/1:2,590:1.00:592
chr16	88874778	rs15829	C	T	2219.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr16	88876666	rs8191489	C	G	6204.77	.	AC=1;AF=0.500;AN=2;DB;DP=487;set=Intersection	GT:AD:AF:DP	0/1:202,272:0.57:474
chr16	88880811	rs11076715	C	T	840.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:14,37:0.73:51
chr16	88880965	rs11076716	C	G	1066.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:50,50:0.50:100
chr16	88884466	rs2303271	C	T	6169.77	.	AC=1;AF=0.500;AN=2;DB;DP=542;set=Intersection	GT:AD:AF:DP	0/1:253,287:0.53:540
chr16	88893013	rs3859024	C	G	1839.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:61,89:0.59:150
chr16	88901850	rs11076721	T	A	1272.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:37,52:0.58:89
chr16	88902183	rs1064315	G	A	4363.77	.	AC=1;AF=0.500;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	0/1:139,199:0.59:338
chr16	88902276	rs12934499	C	T	2889.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:106,134:0.56:240
chr16	88902518	rs2269333	A	G	1409.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:43,65:0.60:108
chr16	88902780	rs12444543	A	G	4292.77	.	AC=1;AF=0.500;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	0/1:176,192:0.52:368
chr16	88902820	rs11076722	T	C	4034.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.241;ClippingRankSum=0.000;DB;DP=219;ExcessHet=3.0103;FS=1.776;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=1.000;QD=18.68;ReadPosRankSum=2.181;SOR=0.554;set=HC	GT:AD:AF:DP	0/1:109,107:0.50:216
chr16	88902823	rs11076723	G	T	3978.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.602;ClippingRankSum=0.000;DB;DP=208;ExcessHet=3.0103;FS=3.413;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=1.024;QD=19.41;ReadPosRankSum=1.506;SOR=0.494;set=HC	GT:AD:AF:DP	0/1:101,104:0.51:205
chr16	88907283	rs8054994	G	T	3174.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:93,133:0.59:226
chr16	88909028	rs71395332	C	T	1759.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:58,71:0.55:129
chr16	88909095	rs35137494	G	A	4683.77	.	AC=1;AF=0.500;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	0/1:198,226:0.53:424
chr16	88921493	rs12932588	C	A	375.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:15,17:0.53:32
chr16	88921634	rs34150867	C	G	3633.77	.	AC=1;AF=0.500;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:154,164:0.52:318
chr16	88922989	rs113289677	A	AC	504.73	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:14,21:0.60:35
chr16	88927221	rs3826061	T	C	2070.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:74,90:0.55:164
chr16	88931363	rs141563331	A	AGGGAG	1492.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.662;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=5.579;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=0.000;QD=10.66;ReadPosRankSum=-0.080;SOR=1.588;set=HC	GT:AD:AF:DP	0/1:99,41:0.29:140
chr16	88931914	rs889753	T	C	1540.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:51,67:0.57:118
chr16	88946955	rs564705	A	G	3101.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr16	88947780	rs199953961	C	T	5050.77	.	AC=1;AF=0.500;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	0/1:133,220:0.62:353
chr16	88949000	rs4782504	A	G	1339.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr16	89160158	rs76688594	G	C	84.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr16	89160452	rs9938075	A	G	285.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.81;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr16	89167066	rs57558972	C	G	2556.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr16	89167075	rs11273288	C	CCCCAGGAGGCTCCCGGGAG	5970.73	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr16	89167094	rs7188200	T	C	5995.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr16	89167140	rs7201122	G	C	11220.77	.	AC=2;AF=1.00;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	1/1:0,404:1.00:404
chr16	89167395	rs6500526	C	T	22802.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.928;ClippingRankSum=0.000;DB;DP=527;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=43.94;ReadPosRankSum=1.579;SOR=0.803;set=HC	GT:AD:AF:DP	1/1:2,517:1.00:519
chr16	89167404	rs7193255	T	C	23330.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.971;ClippingRankSum=0.000;DB;DP=551;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=42.81;ReadPosRankSum=2.203;SOR=0.814;set=HC	GT:AD:AF:DP	1/1:2,543:1.00:545
chr16	89167431	rs6500527	G	C	16305.77	.	AC=2;AF=1.00;AN=2;DB;DP=584;set=Intersection	GT:AD:AF:DP	1/1:0,583:1.00:583
chr16	89167443	rs6500528	T	C	15948.77	.	AC=2;AF=1.00;AN=2;DB;DP=589;set=Intersection	GT:AD:AF:DP	1/1:0,586:1.00:586
chr16	89167458	rs6500529	C	A	16863.77	.	AC=2;AF=1.00;AN=2;DB;DP=617;set=Intersection	GT:AD:AF:DP	1/1:0,613:1.00:613
chr16	89167792	rs8060043	C	T	3539.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr16	89168981	rs4782457	T	C	3385.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr16	89169205	rs4782456	C	G	12891.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr16	89169219	rs10578141	CCT	C	11817.73	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr16	89169312	rs4782455	T	C	2274.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr16	89178457	.	G	GTGCCTGCTCATCTTCCCACCGAGTGCTTCCTTTCCTCCGCCGCCGTGGGTCTC	5341.73	.	AC=2;AF=1.00;AN=2;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=109.01;SOR=5.549;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr16	89178773	rs4782449	A	G	2160.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr16	89180664	rs9940965	C	G	5556.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr16	89180883	rs3743979	G	A	5365.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr16	89180935	rs3743980	G	T	2779.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr16	89187378	rs3743983	G	C	5057.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr16	89188672	rs8058601	C	A	7168.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:1,251:1.00:252
chr16	89199651	rs12447947	G	A	1558.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:91,75:0.45:166
chr16	89212200	rs4302032	A	G	1513.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:40,69:0.63:109
chr16	89220556	rs141090143	C	T	4637.77	.	AC=1;AF=0.500;AN=2;DB;DP=632;set=Intersection	GT:AD:AF:DP	0/1:385,246:0.39:631
chr16	89238190	rs12927793	G	A	8626.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:0,319:1.00:319
chr16	89250145	rs2287357	G	A	3953.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:121,162:0.57:283
chr16	89251851	rs2287354	A	G	3026.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:119,136:0.53:255
chr16	89254412	rs139889439	AGGGTGGGAGGGGAGGGT	A	1189.73	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:41,34:0.45:75
chr16	89256695	rs72819366	G	A	10457.77	.	AC=1;AF=0.500;AN=2;DB;DP=975;set=Intersection	GT:AD:AF:DP	0/1:469,489:0.51:958
chr16	89258747	rs75791347	A	C	4029.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:107,178:0.62:285
chr16	89259993	rs3815615	A	G	3247.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:126,151:0.55:277
chr16	89263851	rs3743986	T	C	5371.77	.	AC=1;AF=0.500;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	0/1:209,244:0.54:453
chr16	89265087	rs61732365	A	G	11955.77	.	AC=1;AF=0.500;AN=2;DB;DP=637;set=Intersection	GT:AD:AF:DP	0/1:310,320:0.51:630
chr16	89265100	rs61732366	GC	AT	11609.77	.	AC=1;AF=0.500;AN=2;DB;DP=607;JOINED;set=Intersection	GT:AD:AF:DP	0/1:304,298:0.50:602
chr16	89265466	rs12926888	A	G	10522.77	.	AC=1;AF=0.500;AN=2;DB;DP=900;set=Intersection	GT:AD:AF:DP	0/1:383,506:0.57:889
chr16	89267769	rs34679577	GC	G	1087.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.34;QD=35.09;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr16	89287613	rs10586525	CAG	C	3825.73	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr16	89288418	rs9931258	A	G	4137.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr16	89291210	rs113560259	G	GGTGA	5568.73	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr16	89291309	rs28533907	A	T	849.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr16	89291945	rs11464538	A	AT	7526.73	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:13,337:0.96:350
chr16	89291948	rs12926996	C	T	16298.77	.	AC=2;AF=1.00;AN=2;DB;DP=356;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.91;SOR=1.128;set=HC	GT:AD:AF:DP	1/1:0,355:1.00:355
chr16	89291951	rs12926997	C	T	16435.77	.	AC=2;AF=1.00;AN=2;DB;DP=376;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.83;SOR=1.044;set=HC	GT:AD:AF:DP	1/1:0,375:1.00:375
chr16	89293271	rs28417933	A	C	17645.77	.	AC=2;AF=1.00;AN=2;DB;DP=648;set=Intersection	GT:AD:AF:DP	1/1:0,642:1.00:642
chr16	89293614	rs4785626	A	G	12430.77	.	AC=2;AF=1.00;AN=2;DB;DP=442;set=Intersection	GT:AD:AF:DP	1/1:1,432:1.00:433
chr16	89294381	rs28415940	T	C	19290.77	.	AC=2;AF=1.00;AN=2;DB;DP=715;set=Intersection	GT:AD:AF:DP	1/1:0,705:1.00:705
chr16	89294439	rs9921361	G	T	15850.77	.	AC=2;AF=1.00;AN=2;DB;DP=580;set=Intersection	GT:AD:AF:DP	1/1:1,577:1.00:578
chr16	89294511	rs28638280	C	T	11606.77	.	AC=2;AF=1.00;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	1/1:0,414:1.00:414
chr16	89294697	rs60437616	C	T	9858.77	.	AC=2;AF=1.00;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	1/1:1,370:1.00:371
chr16	89299054	rs71158785	T	TA	2320.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.197;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.69;MQRankSum=0.755;QD=17.19;ReadPosRankSum=0.570;SOR=0.602;set=HC	GT:AD:AF:DP	1/1:11,124:0.92:135
chr16	89299200	rs61078268	C	A	43876.77	.	AC=2;AF=1.00;AN=2;DB;DP=1030;set=Intersection	GT:AD:AF:DP	1/1:1,1024:1.00:1025
chr16	89299227	rs62068537	C	T	46378.77	.	AC=2;AF=1.00;AN=2;DB;DP=1147;set=Intersection	GT:AD:AF:DP	1/1:2,1138:1.00:1140
chr16	89299280	rs62068538	T	A	15405.77	.	AC=2;AF=1.00;AN=2;DB;DP=1087;set=Intersection	GT:AD:AF:DP	1/1:6,560:0.99:566
chr16	89299888	.	T	TCG	20834.73	.	AC=2;AF=1.00;AN=2;DP=482;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.46;QD=43.50;SOR=0.840;set=HC	GT:AD:AF:DP	1/1:0,479:1.00:479
chr16	89299890	.	A	ACTGCGTGTGCAACTCAACTCG	28028.73	.	AC=2;AF=1.00;AN=2;DP=514;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.49;QD=55.07;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,509:1.00:509
chr16	89299899	rs34175485	A	G	28945.77	.	AC=2;AF=1.00;AN=2;DB;DP=744;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.56;QD=39.22;SOR=0.888;set=HC	GT:AD:AF:DP	1/1:0,738:1.00:738
chr16	89300015	rs62068548	A	G	29609.77	.	AC=2;AF=1.00;AN=2;DB;DP=1170;set=Intersection	GT:AD:AF:DP	1/1:27,1128:0.98:1155
chr16	89300147	rs62068549	A	G	27847.77	.	AC=2;AF=1.00;AN=2;DB;DP=1459;set=Intersection	GT:AD:AF:DP	1/1:14,1090:0.99:1104
chr16	89300425	rs61754918	C	T	4582.77	.	AC=1;AF=0.500;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	0/1:196,211:0.52:407
chr16	89345122	rs3102367	G	A	3809.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr16	89345408	rs3096305	G	A	15274.77	.	AC=2;AF=1.00;AN=2;DB;DP=567;set=Intersection	GT:AD:AF:DP	1/1:4,560:0.99:564
chr16	89350038	rs2279348	G	A	27315.77	.	AC=2;AF=1.00;AN=2;DB;DP=1017;set=Intersection	GT:AD:AF:DP	1/1:0,1007:1.00:1007
chr16	89350178	rs2279349	G	A	13382.77	.	AC=2;AF=1.00;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	1/1:0,458:1.00:458
chr16	89352149	rs72803305	G	A	1570.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:52,61:0.54:113
chr16	89356880	.	A	AAT	318	.	AC=1;AF=0.500;AN=2;BRF=0.22;FR=0.5000;HP=2;HapScore=2;MGOF=25;MMLQ=24;MQ=51.81;NF=14;NR=0;PP=318;QD=25.7857142857;SC=TCAGGGCTCCAGCGGGGGAGG;SbPval=1.0;Source=Platypus;TC=23;TCF=23;TCR=0;TR=14;WE=89356913;WS=89356871;set=Platypus	GT:AD:AF:DP	1/0:9,14:0.61:23
chr16	89356881	.	GC	G	318	.	AC=1;AF=0.500;AN=2;BRF=0.22;FR=0.5000;HP=1;HapScore=2;MGOF=25;MMLQ=21;MQ=51.81;NF=14;NR=0;PP=318;QD=25.7857142857;SC=CAGGGCTCCAGCGGGGGAGGC;SbPval=1.0;Source=Platypus;TC=23;TCF=23;TCR=0;TR=14;WE=89356913;WS=89356871;set=Platypus	GT:AD:AF:DP	1/0:9,14:0.61:23
chr16	89356882	.	CGGGGGAGGCTCAGGGCTCCAATG	C	960.73	.	AC=1;AF=0.500;AN=2;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=11.303;MLEAC=1;MLEAF=0.500;MQ=59.22;MQRankSum=-0.141;QD=35.58;SOR=6.518;set=HC	GT:AD:AF:DP	0/1:2,25:0.93:27
chr16	89356902	.	AAT	A	310	.	AC=1;AF=0.500;AN=2;BRF=0.22;FR=0.5000;HP=2;HapScore=2;MGOF=25;MMLQ=24;MQ=54.59;NF=25;NR=1;PP=310;QD=13.8569341245;SC=TCAGGGCTCCAATGGGGGGAG;SbPval=0.88;Source=Platypus;TC=36;TCF=33;TCR=3;TR=26;WE=89356913;WS=89356871;set=Platypus	GT:AD:AF:DP	1/0:10,26:0.72:36
chr16	89356905	.	G	GC	336	.	AC=1;AF=0.500;AN=2;BRF=0.22;FR=0.5000;HP=5;HapScore=2;MGOF=25;MMLQ=24;MQ=54.83;NF=25;NR=1;PP=336;QD=13.8846153846;SC=GGGCTCCAATGGGGGGAGGCT;SbPval=0.87;Source=Platypus;TC=38;TCF=35;TCR=3;TR=26;WE=89356913;WS=89356871;set=Platypus	GT:AD:AF:DP	1/0:12,26:0.68:38
chr16	89371827	rs3114912	G	A	5494.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr16	89371839	rs2277908	G	A	4584.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr16	89379936	rs3102350	T	C	7828.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr16	89389645	rs3114900	G	C	3981.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.52;SOR=0.980;set=HC	GT:AD:AF:DP	1/1:0,156:1.00:156
chr16	89574166	rs3809641	C	G	2717.77	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:188,136:0.42:324
chr16	89576879	rs5818722	GT	G	582.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.211;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=4.530;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.000;QD=4.48;ReadPosRankSum=1.967;SOR=1.031;set=HC	GT:AD:AF:DP	0/1:72,58:0.45:130
chr16	89577046	rs3922633	C	T	2676.77	.	AC=1;AF=0.500;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	0/1:240,144:0.38:384
chr16	89590060	rs28643511	G	A	509.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:23,23:0.50:46
chr16	89590168	rs113476208	T	TATCTC	4515.73	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:161,114:0.41:275
chr16	89590243	rs3803680	G	A	4423.77	.	AC=1;AF=0.500;AN=2;DB;DP=595;set=Intersection	GT:AD:AF:DP	0/1:362,225:0.38:587
chr16	89590667	rs3803679	T	C	763.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:34,39:0.53:73
chr16	89596106	rs3803676	C	T	684.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:46,34:0.42:80
chr16	89597057	rs4785690	G	T	739.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:82,39:0.32:121
chr16	89597221	rs4785691	A	G	1332.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:59,62:0.51:121
chr16	89598760	rs463701	A	G	1511.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:88,67:0.43:155
chr16	89612500	.	C	CT	173.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.434;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;FS=5.523;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=1.127;QD=5.43;ReadPosRankSum=-0.284;SOR=0.391;set=HC	GT:AD:AF:DP	0/1:17,15:0.47:32
chr16	89612979	.	ACC	A,AC	3332.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=3.108;ClippingRankSum=0.000;DP=203;ExcessHet=3.0103;FS=31.269;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=17.00;ReadPosRankSum=1.866;SOR=1.006;set=HC	GT:AD:AF:DP	1/2:37,68,91:0.35,0.46:196
chr16	89628073	rs9930567	G	A	1406.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:109,67:0.38:176
chr16	89629218	rs258327	A	G	4336.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr16	89645437	rs369230	G	T	1941.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:105,93:0.47:198
chr16	89649675	rs455868	G	A	1970.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr16	89650371	rs408800	T	G	3037.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr16	89653032	rs452176	G	A	2530.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:148,127:0.46:275
chr16	89653524	.	C	CCCGCCCCATG	2973	.	AC=1;AF=0.500;AN=2;BRF=0.52;FR=0.5000;HP=3;HapScore=1;MGOF=31;MMLQ=24;MQ=59.78;NF=0;NR=39;PP=2973;QD=20;SC=AGTCCATGGCCCCGCCCCATG;SbPval=1.0;Source=Platypus;TC=100;TCF=4;TCR=96;TR=39;WE=89653532;WS=89653514;set=Platypus	GT:AD:AF:DP	1/0:61,39:0.39:100
chr16	89653540	.	CCCT	C	756.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.653;ClippingRankSum=0.000;DP=135;ExcessHet=3.0103;FS=17.784;MLEAC=1;MLEAF=0.500;MQ=60.39;MQRankSum=2.773;QD=12.01;ReadPosRankSum=2.738;SOR=4.199;set=HC	GT:AD:AF:DP	0/1:37,26:0.41:63
chr16	89653542	.	C	A	2920	.	AC=1;AF=0.500;AN=2;BRF=0.52;FR=0.5000;HP=4;HapScore=1;MGOF=19;MMLQ=24;MQ=58.01;NF=0;NR=24;PP=2920;QD=20;SC=ATGCCGCCCCCTCAGTCCGTG;SbPval=1.0;Source=Platypus;TC=92;TCF=20;TCR=72;TR=24;WE=89653573;WS=89653532;set=Platypus	GT:AD:AF:DP	1/0:68,24:0.26:92
chr16	89653543	.	TCAGTCCGTGGCCCCGCCCCGC	T	2954	.	AC=1;AF=0.500;AN=2;BRF=0.52;FR=0.5000;HP=6;HapScore=1;MGOF=19;MMLQ=24;MQ=57.74;NF=0;NR=39;PP=2954;QD=20;SC=TGCCGCCCCCTCAGTCCGTGG;SbPval=1.0;Source=Platypus;TC=64;TCF=1;TCR=63;TR=39;WE=89653573;WS=89653532;set=Platypus	GT:AD:AF:DP	1/0:25,39:0.61:64
chr16	89653545	.	AGTCCG	A	756.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.080;ClippingRankSum=0.000;DP=135;ExcessHet=3.0103;FS=17.784;MLEAC=1;MLEAF=0.500;MQ=60.39;MQRankSum=2.773;QD=12.01;ReadPosRankSum=3.416;SOR=4.199;set=HC	GT:AD:AF:DP	0/1:37,26:0.41:63
chr16	89653552	.	GGCCCCGCCCCGCC	G	755.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.137;ClippingRankSum=0.000;DP=132;ExcessHet=3.0103;FS=17.784;MLEAC=1;MLEAF=0.500;MQ=60.40;MQRankSum=2.773;QD=12.00;ReadPosRankSum=4.484;SOR=4.199;set=HC	GT:AD:AF:DP	0/1:37,26:0.41:63
chr16	89653563	rs9924678	G	T	218.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.450;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.41;MQRankSum=-1.879;QD=5.09;ReadPosRankSum=-3.717;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:26,17:0.40:43
chr16	89653816	rs74213330	G	A	534.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:22,24:0.52:46
chr16	89653999	rs140664874	TTGAG	T	5017.73	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:153,132:0.46:285
chr16	89654123	rs76691791	AG	GT	1072.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.431;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=5.268;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.45;MQRankSum=-1.402;QD=18.50;ReadPosRankSum=0.176;SOR=1.874;set=HC	GT:AD:AF:DP	0/1:29,29:0.50:58
chr16	89654130	rs71374184	C	G	1022.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:23,28:0.55:51
chr16	89656163	rs397564	A	G	3136.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:2,115:0.98:117
chr16	89656251	rs464349	T	C	10093.77	.	AC=2;AF=1.00;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	1/1:0,382:1.00:382
chr16	89657270	rs466141	C	T	1479.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:74,62:0.46:136
chr16	89662422	rs461227	A	G	1503.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:76,62:0.45:138
chr16	89662990	rs694285	T	C	2075.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:183,113:0.38:296
chr16	89663072	rs659974	G	A	947.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:58,46:0.44:104
chr16	89696999	rs395593	C	T	571.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.98;QD=25.99;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr16	89717781	rs141950187	AAAAC	A	1218.73	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:27,32:0.54:59
chr16	89720409	rs258338	T	A	6460.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr16	89723870	rs34878706	G	A	1969.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:57,83:0.59:140
chr16	89724063	.	C	T	7820.77	.	AC=1;AF=0.500;AN=2;DP=655;set=Intersection	GT:AD:AF:DP	0/1:283,360:0.56:643
chr16	89724268	rs35415928	C	T	2797.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:78,127:0.62:205
chr16	89724572	rs154664	T	C	2972.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr16	89735923	rs9937322	G	C	407.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:24,17:0.41:41
chr16	89753971	rs258325	T	C	9434.77	.	AC=2;AF=1.00;AN=2;DB;DP=439;set=Intersection	GT:AD:AF:DP	1/1:3,391:0.99:394
chr16	89754255	rs258324	T	G	4194.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr16	89757199	rs62068364	C	T	511.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:14,20:0.59:34
chr16	89758973	rs187282	A	G	9465.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	1/1:0,351:1.00:351
chr16	89760552	rs460057	T	C	7790.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr16	89760652	rs2162943	C	T	11493.77	.	AC=2;AF=1.00;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	1/1:0,432:1.00:432
chr16	89760712	rs2115400	G	A	8378.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr16	89763045	rs460367	C	T	4785.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr16	89763214	rs4247353	T	C	13811.77	.	AC=2;AF=1.00;AN=2;DB;DP=510;set=Intersection	GT:AD:AF:DP	1/1:0,502:1.00:502
chr16	89763359	rs3803690	G	C	5216.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr16	89774396	rs1110331	G	A	4556.77	.	AC=1;AF=0.500;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	0/1:160,211:0.57:371
chr16	89774411	rs11860230	T	C	8219.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chr16	89775422	rs59660050	C	G	1589.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:46,67:0.59:113
chr16	89775429	rs143353176	C	CCCCG	3671.73	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr16	89777761	rs12920315	C	T	5759.77	.	AC=1;AF=0.500;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	0/1:174,261:0.60:435
chr16	89778202	rs376041423	G	GC	1210.73	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:39,32:0.45:71
chr16	89778219	rs28588261	A	T	1384.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.500;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=5.434;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.098;QD=14.58;ReadPosRankSum=-1.348;SOR=1.290;set=HC	GT:AD:AF:DP	0/1:51,44:0.46:95
chr16	89778224	rs7206836	G	C	3441.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.10;QD=34.08;SOR=1.368;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chr16	89782989	rs7206570	A	G	5592.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr16	89783187	rs4785706	C	T	3600.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr16	89784336	rs7190099	C	T	19616.77	.	AC=1;AF=0.500;AN=2;DB;DP=1953;set=Intersection	GT:AD:AF:DP	0/1:683,998:0.59:1681
chr16	89784521	rs10468304	T	A	54506.77	.	AC=2;AF=1.00;AN=2;DB;DP=2068;set=Intersection	GT:AD:AF:DP	1/1:0,2041:1.00:2041
chr16	89787040	rs4785589	C	T	496.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:34,24:0.41:58
chr16	89788020	.	G	A	1221.77	.	AC=1;AF=0.500;AN=2;DP=144;set=Intersection	GT:AD:AF:DP	0/1:79,64:0.45:143
chr16	89789898	rs6500437	T	C	7389.77	.	AC=1;AF=0.500;AN=2;DB;DP=719;set=Intersection	GT:AD:AF:DP	0/1:346,357:0.51:703
chr16	89790167	rs4785590	G	C	1283.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:128,69:0.35:197
chr16	89793555	rs2099105	T	C	2468.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr16	89795485	rs7204478	C	T	388.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:12,16:0.57:28
chr16	89800529	rs9935559	C	T	4558.77	.	AC=1;AF=0.500;AN=2;DB;DP=497;set=Intersection	GT:AD:AF:DP	0/1:250,224:0.47:474
chr16	89804335	rs17233826	CT	C	13523.73	.	AC=1;AF=0.500;AN=2;DB;DP=1104;set=Intersection	GT:AD:AF:DP	0/1:479,562:0.54:1041
chr16	89805261	rs1800359	A	G	7433.77	.	AC=1;AF=0.500;AN=2;DB;DP=817;set=Intersection	GT:AD:AF:DP	0/1:440,372:0.46:812
chr16	89805977	rs1061646	G	A	2559.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:106,121:0.53:227
chr16	89806347	rs7195906	A	T	3265.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:138,163:0.54:301
chr16	89811196	rs9923733	T	C	1150.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:41,45:0.52:86
chr16	89815217	rs1800345	C	T	1527.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:49,64:0.57:113
chr16	89818491	rs3743860	T	C	2398.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:90,108:0.55:198
chr16	89818732	rs12931267	C	G	3001.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:89,135:0.60:224
chr16	89828977	rs59550802	G	GAA	433.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.116;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.23;ReadPosRankSum=1.613;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:17,30:0.64:47
chr16	89829201	rs9806894	G	C	957.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:26,40:0.61:66
chr16	89836507	rs7200990	T	C	15675.77	.	AC=2;AF=1.00;AN=2;DB;DP=572;set=Intersection	GT:AD:AF:DP	1/1:0,570:1.00:570
chr16	89836865	rs886951	A	G	1254.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.421;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=5.932;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.27;ReadPosRankSum=-0.272;SOR=0.242;set=HC	GT:AD:AF:DP	0/1:26,33:0.56:59
chr16	89836872	rs886950	T	C	1341.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.352;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.36;ReadPosRankSum=-0.355;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:26,34:0.57:60
chr16	89838078	rs1800340	A	G	3551.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:125,164:0.57:289
chr16	89842029	rs3785275	C	G	1641.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:38,67:0.64:105
chr16	89842374	rs1558184	T	G	460.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.658;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=2.679;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.72;ReadPosRankSum=-0.409;SOR=0.249;set=HC	GT:AD:AF:DP	0/1:7,19:0.73:26
chr16	89845110	rs7187436	A	T	1160.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:50,53:0.51:103
chr16	89845194	rs1800337	A	G	3807.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:179,177:0.50:356
chr16	89846195	rs1800335	A	G	93.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:8,6:0.43:14
chr16	89849583	rs2239360	C	T	347.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:16,18:0.53:34
chr16	89857622	rs1057042	T	C	658.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:22,26:0.54:48
chr16	89857700	rs8049660	A	G	1808.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:77,85:0.52:162
chr16	89857964	rs1800330	T	C	1741.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:73,70:0.49:143
chr16	89858505	rs6500452	T	C	5145.77	.	AC=1;AF=0.500;AN=2;DB;DP=496;set=Intersection	GT:AD:AF:DP	0/1:249,242:0.49:491
chr16	89858525	rs1800287	C	G	4163.77	.	AC=1;AF=0.500;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	0/1:223,198:0.47:421
chr16	89859008	rs3856	G	A	1738.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:55,47:0.46:102
chr16	89859015	rs35617323	GT	G	1701.73	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:45,45:0.50:90
chr16	89866043	rs7190823	T	C	6272.77	.	AC=1;AF=0.500;AN=2;DB;DP=523;set=Intersection	GT:AD:AF:DP	0/1:219,298:0.58:517
chr16	89866160	rs7186192	A	G	2058.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:42,84:0.67:126
chr16	89869761	rs1800286	T	C	8513.77	.	AC=1;AF=0.500;AN=2;DB;DP=737;set=Intersection	GT:AD:AF:DP	0/1:331,392:0.54:723
chr16	89874559	rs11076627	A	C	1511.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:48,56:0.54:104
chr16	89874628	rs1800285	C	T	4753.77	.	AC=1;AF=0.500;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	0/1:136,205:0.60:341
chr16	89902482	rs12598477	T	C	1274.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:21,47:0.69:68
chr16	89912063	rs13331995	T	C	6086.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr16	89922735	rs116983808	G	A	417.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:28,18:0.39:46
chr16	89925556	rs7200842	G	A	11978.77	.	AC=2;AF=1.00;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	1/1:0,446:1.00:446
chr16	89934845	rs181536591	C	A	406.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:25,18:0.42:43
chr16	89944842	rs71971202	AT	A	306.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.006;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=0.996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.04;ReadPosRankSum=-0.802;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:56,45:0.45:101
chr16	89973777	rs143440936	CTCCCAGT	C	4683.73	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:5,118:0.96:123
chr16	89973796	rs111916961	A	G	4424.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:5,94:0.95:99
chr16	89973811	.	GC	G	2286.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.218;ClippingRankSum=0.000;DP=58;ExcessHet=3.0103;FS=12.256;MLEAC=1;MLEAF=0.500;MQ=59.66;MQRankSum=0.000;QD=40.12;ReadPosRankSum=-1.217;SOR=3.003;set=HC	GT:AD:AF:DP	0/1:9,48:0.84:57
chr16	89973813	.	TCCAACCTTCCAGC	T	1938.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.024;ClippingRankSum=0.000;DP=60;ExcessHet=3.0103;FS=9.471;MLEAC=1;MLEAF=0.500;MQ=59.67;MQRankSum=0.000;QD=32.86;ReadPosRankSum=-1.448;SOR=2.494;set=HC	GT:AD:AF:DP	0/1:13,46:0.78:59
chr16	89986117	rs1805007	C	T	10818.77	.	AC=1;AF=0.500;AN=2;DB;DP=911;MQ=59.99;set=Intersection	GT:AD:AF:DP	0/1:411,493:0.55:904
chr16	89986383	rs34490506	C	T	11234.77	.	AC=1;AF=0.500;AN=2;DB;DP=893;set=Intersection	GT:AD:AF:DP	0/1:383,496:0.56:879
chr16	90000925	rs4396536	T	C	8317.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr16	90020861	rs7195043	C	T	818.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:50,41:0.45:91
chr16	90030355	rs13330431	T	C	2184.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.890;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=3.967;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.08;ReadPosRankSum=-0.188;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:75,92:0.55:167
chr16	90037828	rs4785755	G	A	15738.77	.	AC=2;AF=1.00;AN=2;DB;DP=604;set=Intersection	GT:AD:AF:DP	1/1:0,585:1.00:585
chr16	90050880	rs4785759	A	C	2071.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:150,98:0.40:248
chr16	90075100	rs11642185	C	G	616.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:16,19:0.54:35
chr16	90075412	rs2241084	T	C	907.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr16	90078022	rs77381714	T	C	5110.77	.	AC=1;AF=0.500;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	0/1:175,233:0.57:408
chr16	90102835	rs868045	A	G	9241.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr16	90103087	rs4464078	C	T	11841.77	.	AC=2;AF=1.00;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	1/1:0,416:1.00:416
chr16	90103117	rs7498985	G	A	8567.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chr16	90103246	rs4374173	C	G	1087.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr16	90108832	rs2241035	C	T	18555.77	.	AC=2;AF=1.00;AN=2;DB;DP=707;set=Intersection	GT:AD:AF:DP	1/1:0,699:1.00:699
chr16	90108987	rs112439037	C	T	915.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:70,41:0.37:111
chr16	90109711	rs3743825	A	G	9264.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:0,336:1.00:336
chr16	90110798	rs74583214	C	T	2077.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:70,81:0.54:151
chr16	90128224	rs2077426	C	G	5106.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr16	90133137	rs16966444	G	T	9296.77	.	AC=2;AF=1.00;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	1/1:0,329:1.00:329
chr16	90141355	rs12925933	A	C	14282.77	.	AC=2;AF=1.00;AN=2;DB;DP=545;set=Intersection	GT:AD:AF:DP	1/1:0,538:1.00:538
chr16	90141477	rs7196459	T	G	7386.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr16	90142087	rs35256427	G	A	17642.77	.	AC=2;AF=1.00;AN=2;DB;DP=674;set=Intersection	GT:AD:AF:DP	1/1:0,647:1.00:647
chr16	90161065	rs8051193	A	T	2841.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:2,108:0.98:110
chr16	90161164	rs8049480	G	A	3676.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.76;QD=43.26;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr16	90161167	.	CT	TG	3628.77	.	AC=2;AF=1.00;AN=2;DP=81;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=41.22;QD=46.52;SOR=0.855;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr16	90161292	rs6500468	G	C	2372.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr17	6115	rs61739713	G	C	1950.77	.	AC=1;AF=0.500;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	0/1:260,117:0.31:377
chr17	6157	rs2294076	A	G	1074.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:198,70:0.26:268
chr17	11743	rs34663111	A	G	78.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:11,5:0.31:16
chr17	11830	rs62054999	A	G	218.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.026;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=1.868;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.76;ReadPosRankSum=0.056;SOR=1.118;set=HC	GT:AD:AF:DP	0/1:27,11:0.29:38
chr17	13905	rs6565705	G	A	1105.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:142,62:0.30:204
chr17	14008	rs2294075	G	C	1435.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:116,71:0.38:187
chr17	65610	rs62057050	G	T	156.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:42,12:0.22:54
chr17	69317	.	CT	C	177.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.056;ClippingRankSum=0.000;DP=51;ExcessHet=3.0103;FS=1.301;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=3.78;ReadPosRankSum=0.113;SOR=0.459;set=HC	GT:AD:AF:DP	0/1:26,21:0.45:47
chr17	131516	rs12942829	C	A	513.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:10,22:0.69:32
chr17	131709	rs11150871	A	G	526.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.076;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=3.592;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.71;ReadPosRankSum=1.641;SOR=1.074;set=HC	GT:AD:AF:DP	0/1:107,35:0.25:142
chr17	131756	rs12451279	T	G	192.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.902;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.29;ReadPosRankSum=1.131;SOR=0.795;set=HC	GT:AD:AF:DP	0/1:67,17:0.20:84
chr17	181474	rs12953074	T	C	4571.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:119,208:0.64:327
chr17	260142	rs7503725	G	T	347.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:4,13:0.76:17
chr17	260182	rs7502594	T	C	512.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:8,22:0.73:30
chr17	263294	rs35229416	C	G	647.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:29,31:0.52:60
chr17	263622	rs76926791	A	G	532.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.582;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.959;MLEAC=1;MLEAF=0.500;MQ=56.99;MQRankSum=-0.250;QD=6.58;ReadPosRankSum=-1.361;SOR=0.877;set=HC	GT:AD:AF:DP	0/1:50,31:0.38:81
chr17	465993	rs36070043	G	GA	97.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.050;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=2.741;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.58;ReadPosRankSum=0.988;SOR=0.346;set=HC	GT:AD:AF:DP	0/1:48,14:0.23:62
chr17	489431	rs2304951	A	C	841.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:73,42:0.37:115
chr17	505129	rs61644407	A	C	1054.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:123,62:0.34:185
chr17	505139	rs56807006	G	A	2615.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:59,117:0.66:176
chr17	505162	rs4968055	A	G	4079.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr17	505227	rs7225041	G	C	1469.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr17	505250	rs4968092	A	G	1266.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr17	565264	rs140113256	AT	A	342.73	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:27,20:0.43:47
chr17	618039	rs2474694	G	A	6883.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr17	618100	rs2955626	C	G	2795.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr17	636266	rs141977343	A	AGGGCC	850.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.582;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=0.945;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.26;ReadPosRankSum=0.582;SOR=0.917;set=HC	GT:AD:AF:DP	0/1:80,23:0.22:103
chr17	648186	rs7813	G	A	535.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:74,32:0.30:106
chr17	648498	rs2740349	C	T	1190.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:159,68:0.30:227
chr17	649547	rs910925	G	C	1867.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:194,96:0.33:290
chr17	649935	rs2740348	G	C	2281.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.052;ClippingRankSum=0.000;DB;DP=455;ExcessHet=3.0103;FS=0.574;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.15;ReadPosRankSum=1.166;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:313,130:0.29:443
chr17	650206	rs3744742	C	T	1699.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:231,96:0.29:327
chr17	673895	rs2644706	C	G	111.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.622;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.29;ReadPosRankSum=0.357;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:26,8:0.24:34
chr17	678941	.	G	C	192.77	.	AC=1;AF=0.500;AN=2;DP=31;set=Intersection	GT:AD:AF:DP	0/1:21,10:0.32:31
chr17	685640	rs2273454	G	T	3383.77	.	AC=1;AF=0.500;AN=2;DB;DP=526;set=Intersection	GT:AD:AF:DP	0/1:342,181:0.35:523
chr17	686296	rs34512506	GT	G	128.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.501;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=1.560;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.68;ReadPosRankSum=0.730;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:21,14:0.40:35
chr17	686589	rs35144249	C	CT	364.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.042;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=4.467;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.44;ReadPosRankSum=-0.231;SOR=1.473;set=HC	GT:AD:AF:DP	0/1:35,32:0.48:67
chr17	704480	rs570710	C	A	64.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:20,5:0.20:25
chr17	708223	rs2295477	G	A	50.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.382;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=4.099;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.49;ReadPosRankSum=-1.033;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:28,6:0.18:34
chr17	708531	rs2295478	T	C	522.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:89,35:0.28:124
chr17	729506	.	G	C	168.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.033;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=1.773;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.92;ReadPosRankSum=-1.090;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:31,12:0.28:43
chr17	799933	rs2467248	A	G	1870.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:40,72:0.64:112
chr17	800125	rs77274853	C	T	1990.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:66,113:0.63:179
chr17	882474	.	A	AGGGCAGGGGTAACGGGCGTGGGGGGC	769.73	.	AC=2;AF=1.00;AN=2;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=69.98;SOR=4.977;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr17	910636	rs2586304	A	G	1691.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr17	912914	rs12600864	G	A	1777.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr17	915368	rs333652	A	G	11546.77	.	AC=2;AF=1.00;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	1/1:0,393:1.00:393
chr17	916446	rs9894835	G	A	3997.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:115,178:0.61:293
chr17	916466	rs4968074	C	T	3431.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:96,154:0.62:250
chr17	925670	rs2586251	G	A	180.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:34,12:0.26:46
chr17	925742	rs72812091	G	A	1592.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:28,66:0.70:94
chr17	925764	rs2663345	A	G	853.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.099;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=6.521;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.00;ReadPosRankSum=-0.462;SOR=0.299;set=HC	GT:AD:AF:DP	0/1:78,44:0.36:122
chr17	934753	rs201716920	TCAGCCCCCG	T	335.90	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:2,9:0.82:11
chr17	934757	.	C	CCCCCGCAGCCCCCCGAG	2720	.	AC=1;AF=0.500;AN=2;BRF=0.37;FR=0.5000;HP=4;HapScore=1;MGOF=73;MMLQ=24;MQ=58.99;NF=1;NR=11;PP=2720;QD=20;SC=ACCCCATCAGCCCCCGCAGCC;SbPval=0.92;Source=Platypus;TC=15;TCF=3;TCR=12;TR=12;WE=934769;WS=934743;set=Platypus	GT:AD:AF:DP	1/0:3,12:0.80:15
chr17	953456	rs2257540	C	T	3666.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:1,126:0.99:127
chr17	953737	rs2257222	T	C	747.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:110,44:0.29:154
chr17	960221	rs2304959	C	G	8090.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr17	961149	rs9912632	T	A	1304.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr17	961304	rs2260448	C	A	2128.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.29;SOR=0.798;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr17	961376	.	C	CTTTT	169.87	.	AC=2;AF=1.00;AN=2;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.97;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr17	961900	rs2304961	G	A	972.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr17	970251	rs2258097	TG	CA	2889.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr17	970413	rs2262150	C	T	2376.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr17	976699	rs62067902	A	G	1059.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:61,47:0.44:108
chr17	976711	rs2258893	T	C	3472.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr17	986742	rs2257468	A	G	3508.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr17	1004057	rs74790420	C	A	3821.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:86,161:0.65:247
chr17	1083083	rs62070499	A	G	2883.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.93;QD=28.55;SOR=2.678;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chr17	1173790	rs2063188	A	G	284.73	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:25,16:0.39:41
chr17	1174094	rs3951819	A	G	1489.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.053;ClippingRankSum=0.000;DB;DP=322;ExcessHet=3.0103;FS=0.947;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.67;ReadPosRankSum=-0.898;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:229,90:0.28:319
chr17	1183354	rs6502774	T	C	2385.77	.	AC=1;AF=0.500;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	0/1:287,133:0.32:420
chr17	1183464	rs6502776	A	G	2946.77	.	AC=1;AF=0.500;AN=2;DB;DP=582;set=Intersection	GT:AD:AF:DP	0/1:393,176:0.31:569
chr17	1264611	rs140254754	TA	T,TAA	954.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-2.074;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=6.126;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.15;MQRankSum=0.519;QD=8.37;ReadPosRankSum=-1.999;SOR=0.225;set=HC	GT:AD:AF:DP	1/2:18,33,63:0.29,0.55:114
chr17	1265325	rs3752827	T	A	909.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:70,47:0.40:117
chr17	1268444	rs35058521	GA	G	3018.73	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:62,155:0.71:217
chr17	1326754	.	GA	G	98.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.182;ClippingRankSum=0.000;DP=179;ExcessHet=3.0103;FS=0.794;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.59;ReadPosRankSum=-0.399;SOR=0.540;set=HC	GT:AD:AF:DP	0/1:130,37:0.22:167
chr17	1359363	rs2229075	T	G	12727.77	.	AC=2;AF=1.00;AN=2;DB;DP=492;set=Intersection	GT:AD:AF:DP	1/1:2,487:1.00:489
chr17	1370459	rs2302459	T	C	2953.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:2,103:0.98:105
chr17	1370720	rs2302457	C	T	6303.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr17	1371088	rs8069059	T	C	511.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.65;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr17	1371123	rs8072859	T	C	1340.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr17	1371473	rs8079811	C	G	4912.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr17	1371818	rs8080389	C	T	4763.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.94;SOR=0.861;set=HC	GT:AD:AF:DP	1/1:0,191:1.00:191
chr17	1372839	rs61753655	C	T	1832.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.339;ClippingRankSum=0.000;DB;DP=379;ExcessHet=3.0103;FS=0.417;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.97;ReadPosRankSum=0.490;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:259,110:0.30:369
chr17	1372987	rs9303175	T	G	8668.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:2,313:0.99:315
chr17	1373518	rs9905106	T	C	3221.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr17	1373612	rs8081370	C	T	3096.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.21;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,106:1.00:106
chr17	1374499	rs56188875	G	A	3396.77	.	AC=1;AF=0.500;AN=2;DB;DP=565;set=Intersection	GT:AD:AF:DP	0/1:369,189:0.34:558
chr17	1377878	rs2286871	T	C	6602.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.17;SOR=1.027;set=HC	GT:AD:AF:DP	1/1:0,143:1.00:143
chr17	1377884	rs2286872	C	T	6916.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.18;SOR=0.964;set=HC	GT:AD:AF:DP	1/1:0,164:1.00:164
chr17	1381005	rs2286876	T	C	1497.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr17	1383784	.	G	C	810.77	.	AC=1;AF=0.500;AN=2;DP=147;set=Intersection	GT:AD:AF:DP	0/1:100,44:0.31:144
chr17	1384066	rs4790518	A	G	13663.77	.	AC=2;AF=1.00;AN=2;DB;DP=526;set=Intersection	GT:AD:AF:DP	1/1:0,519:1.00:519
chr17	1386094	.	G	GCACTGA	2903	.	AC=1;AF=0.500;AN=2;BRF=0.69;FR=0.5000;HP=2;HapScore=2;MGOF=16;MMLQ=18;MQ=58.85;NF=24;NR=9;PP=2903;QD=20;SC=TCCCACACTGGGCTTCTCTCC;SbPval=0.41;Source=Platypus;TC=42;TCF=32;TCR=10;TR=33;WE=1386103;WS=1386046;set=Platypus	GT:AD:AF:DP	0/1:9,33:0.79:42
chr17	1387075	rs7222319	T	C	486.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:71,29:0.29:100
chr17	1387334	.	C	CA	215.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.504;ClippingRankSum=0.000;DP=151;ExcessHet=3.0103;FS=3.240;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.66;ReadPosRankSum=-0.035;SOR=1.160;set=HC	GT:AD:AF:DP	0/1:97,33:0.25:130
chr17	1388973	rs111532225	C	T	264.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.945;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=3.473;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.81;ReadPosRankSum=0.607;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:13,14:0.52:27
chr17	1395682	rs12941864	C	T	2712.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:195,141:0.42:336
chr17	1412455	rs5818804	GC	G	1579.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr17	1419853	rs3815465	C	A	758.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:24,34:0.59:58
chr17	1424948	rs2277669	A	G	2293.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.134;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.07;ReadPosRankSum=1.161;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:30,58:0.66:88
chr17	1424954	.	G	A	2263.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.721;ClippingRankSum=0.000;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.02;ReadPosRankSum=1.405;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:30,57:0.66:87
chr17	1479741	rs6502794	A	G	2066.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr17	1489088	rs4790208	C	G	7244.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr17	1490379	rs143498029	A	ACACTGCGTTTCCCG	2935.73	.	AC=2;AF=1.00;AN=2;DB;DP=117;MQ=63.77;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr17	1490409	rs8078582	T	C	1362.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr17	1493972	rs7210368	T	G	782.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr17	1493999	rs7406591	G	C	1273.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr17	1494027	rs4790668	T	C	2334.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr17	1494567	rs12953268	G	A	4388.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:2,156:0.99:158
chr17	1516314	rs149268142	G	A	1487.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:33,66:0.67:99
chr17	1516480	rs7219369	T	C	5761.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr17	1530979	rs5818816	G	GC	2725.73	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:1,90:0.99:91
chr17	1538546	rs4790250	C	T	7928.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr17	1538628	rs3744644	C	G	6839.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr17	1538669	rs36108564	C	T	4728.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:93,200:0.68:293
chr17	1542153	rs2272012	G	A	1323.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:146,73:0.33:219
chr17	1542190	rs2272011	G	A	1269.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:149,72:0.33:221
chr17	1542803	rs34632795	GA	G	413.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.359;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.49;ReadPosRankSum=0.167;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:6,30:0.83:36
chr17	1550106	rs2293067	C	T	2314.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr17	1611433	rs4790809	A	G	5108.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:1,186:0.99:187
chr17	1611545	rs4790810	A	C	1330.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr17	1630208	rs57207396	C	T	3290.77	.	AC=1;AF=0.500;AN=2;DB;DP=511;set=Intersection	GT:AD:AF:DP	0/1:327,176:0.35:503
chr17	1630395	rs59643265	T	C	1617.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:171,90:0.34:261
chr17	1630584	rs7221974	A	G	1182.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:192,68:0.26:260
chr17	1633868	rs62090047	C	T	2415.77	.	AC=1;AF=0.500;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	0/1:278,130:0.32:408
chr17	1635614	rs62090048	T	C	1305.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.776;ClippingRankSum=0.000;DB;DP=282;ExcessHet=3.0103;FS=1.581;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.68;ReadPosRankSum=-1.996;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:196,83:0.30:279
chr17	1636934	rs3809870	A	G	1793.77	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:233,105:0.31:338
chr17	1637074	rs3809871	A	G	3122.77	.	AC=1;AF=0.500;AN=2;DB;DP=578;set=Intersection	GT:AD:AF:DP	0/1:388,182:0.32:570
chr17	1637302	rs3809872	A	G	4068.77	.	AC=1;AF=0.500;AN=2;DB;DP=679;set=Intersection	GT:AD:AF:DP	0/1:453,221:0.33:674
chr17	1639458	rs11549259	A	G	1105.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:109,63:0.37:172
chr17	1649267	rs7501729	A	G	822.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.608;ClippingRankSum=0.000;DB;DP=282;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.97;ReadPosRankSum=0.167;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:215,62:0.22:277
chr17	1651780	rs2277695	A	G	514.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.789;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.48;ReadPosRankSum=0.395;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:65,29:0.31:94
chr17	1670030	rs79424054	G	T	312.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:5,13:0.72:18
chr17	1673104	rs11658342	G	A	4946.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr17	1673276	rs1136287	C	T	9323.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:0,348:1.00:348
chr17	1674544	rs71375537	CT	C	88.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.023;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=1.702;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=0.634;QD=2.86;ReadPosRankSum=-1.340;SOR=0.275;set=HC	GT:AD:AF:DP	0/1:19,12:0.39:31
chr17	1675127	rs4274474	C	T	548.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr17	1675451	rs5008943	T	C	1381.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr17	1678256	rs2269344	G	C	1467.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr17	1679805	rs2071022	A	G	3150.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr17	1680002	rs6828	T	C	6474.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr17	1684772	rs7224977	T	C	2634.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr17	1684819	.	G	GT	151.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.627;ClippingRankSum=0.000;DP=61;ExcessHet=3.0103;FS=1.347;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.62;ReadPosRankSum=0.556;SOR=0.917;set=HC	GT:AD:AF:DP	0/1:48,10:0.17:58
chr17	1686410	rs9902398	T	C	2664.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:2,98:0.98:100
chr17	1686600	rs12149986	G	A	1631.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr17	1687796	rs3815612	A	G	1863.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr17	1690302	rs68098051	CAA	C	3560.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr17	1690305	rs117380376	G	T	3569.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr17	1704296	rs7224496	C	A	4214.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr17	1707762	rs8067685	A	G	869.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr17	1715435	rs7503422	G	A	3122.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr17	1731268	rs8067660	T	C	8528.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr17	1733399	rs5030749	A	G	2483.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:2,92:0.98:94
chr17	1748028	rs4790827	A	G	2981.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr17	1761431	rs3809874	T	C	15740.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.02;QD=44.97;SOR=0.705;set=HC	GT:AD:AF:DP	1/1:0,350:1.00:350
chr17	1761436	.	A	G	138.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.572;ClippingRankSum=0.000;DP=371;ExcessHet=3.0103;FS=6.708;MLEAC=1;MLEAF=0.500;MQ=54.25;MQRankSum=-6.177;QD=0.37;ReadPosRankSum=-3.191;SOR=1.341;set=HC	GT:AD:AF:DP	0/1:346,25:0.07:371
chr17	1761445	.	CGG	TGA	180.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.027;ClippingRankSum=0.000;DP=382;ExcessHet=3.0103;FS=3.496;JOINED;MLEAC=1;MLEAF=0.500;MQ=54.60;MQRankSum=-7.344;QD=0.47;ReadPosRankSum=-3.075;SOR=0.911;set=HC	GT:AD:AF:DP	0/1:352,30:0.08:382
chr17	1761446	rs11656253	G	A	8655.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.753;ClippingRankSum=0.000;DB;DP=384;ExcessHet=3.0103;FS=3.311;MLEAC=1;MLEAF=0.500;MQ=54.62;MQRankSum=7.089;QD=22.66;ReadPosRankSum=2.533;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:33,349:0.91:382
chr17	1761457	.	C	T	276.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.447;ClippingRankSum=0.000;DP=387;ExcessHet=3.0103;FS=1.431;MLEAC=1;MLEAF=0.500;MQ=54.95;MQRankSum=-8.525;QD=0.72;ReadPosRankSum=-1.975;SOR=0.533;set=HC	GT:AD:AF:DP	0/1:353,34:0.09:387
chr17	1779216	.	CTTTT	C	109.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.297;ClippingRankSum=0.000;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.39;ReadPosRankSum=0.358;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:18,7:0.28:25
chr17	1795180	rs2230931	T	C	1222.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:38,58:0.60:96
chr17	1800217	rs7406062	G	C	1726.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr17	1839674	rs9902457	G	C	201.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:19,11:0.37:30
chr17	1840468	rs9903800	C	T	1305.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:159,73:0.31:232
chr17	1933381	rs2273981	G	A	9747.77	.	AC=2;AF=1.00;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	1/1:0,374:1.00:374
chr17	1937203	rs76946443	G	C	563.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:53,30:0.36:83
chr17	1940232	rs1131600	A	G	5336.77	.	AC=1;AF=0.500;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	0/1:146,239:0.62:385
chr17	1943888	rs2236375	T	C	13889.77	.	AC=2;AF=1.00;AN=2;DB;DP=542;set=Intersection	GT:AD:AF:DP	1/1:0,535:1.00:535
chr17	1945041	rs7216804	A	G	10149.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:0,365:1.00:365
chr17	1945201	rs76439887	T	G	422.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:54,23:0.30:77
chr17	1945621	rs2015866	G	T	5837.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.430;ClippingRankSum=0.000;DB;DP=263;ExcessHet=3.0103;FS=12.446;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.98;ReadPosRankSum=0.601;SOR=1.278;set=HC	GT:AD:AF:DP	1/1:5,249:0.98:254
chr17	1960974	rs77393586	C	T	2146.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:49,99:0.67:148
chr17	1964759	rs145926620	C	CG	1435.73	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:12,67:0.85:79
chr17	1965085	rs7214308	C	T	949.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr17	1965096	rs12939002	C	T	861.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr17	1968983	rs2232486	T	C	5845.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr17	1985050	rs8076897	T	C	1238.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:23,48:0.68:71
chr17	2195933	rs3215741	GA	G	8328.73	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:0,338:1.00:338
chr17	2196088	rs216206	C	T	1879.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr17	2196150	rs216205	C	T	3049.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr17	2200434	rs170043	A	C	2080.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr17	2202943	rs216196	T	C	2448.77	.	AC=1;AF=0.500;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	0/1:286,142:0.33:428
chr17	2203025	rs1885987	T	G	6392.77	.	AC=1;AF=0.500;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	0/1:100,278:0.74:378
chr17	2203167	rs216195	T	G	1299.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:219,78:0.26:297
chr17	2203175	rs1885986	C	G	5343.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:81,222:0.73:303
chr17	2203348	rs216194	T	C	10513.77	.	AC=2;AF=1.00;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	1/1:0,394:1.00:394
chr17	2203453	rs216193	A	G	13077.77	.	AC=2;AF=1.00;AN=2;DB;DP=499;set=Intersection	GT:AD:AF:DP	1/1:1,497:1.00:498
chr17	2222325	rs8081273	C	T	896.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:10,34:0.77:44
chr17	2238741	.	TA	T	165.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.182;ClippingRankSum=0.000;DP=164;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.000;QD=1.20;ReadPosRankSum=0.684;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:96,42:0.30:138
chr17	2265113	rs2429906	C	A	2674.77	.	AC=1;AF=0.500;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	0/1:276,151:0.35:427
chr17	2266709	rs2003969	T	C	889.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:75,44:0.37:119
chr17	2266799	rs745400	G	A	1575.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:181,88:0.33:269
chr17	2266812	rs2003968	T	C	1535.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:188,87:0.32:275
chr17	2268139	rs2447099	G	C	437.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:40,19:0.32:59
chr17	2268311	rs2248821	G	A	1204.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.680;ClippingRankSum=0.000;DB;DP=229;ExcessHet=3.0103;FS=1.122;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.28;ReadPosRankSum=-1.499;SOR=0.810;set=HC	GT:AD:AF:DP	0/1:158,70:0.31:228
chr17	2268681	rs2429908	T	C	520.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:60,28:0.32:88
chr17	2270777	rs2429910	T	C	382.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:36,21:0.37:57
chr17	2276401	rs66956940	CTGA	C	2803.73	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:130,77:0.37:207
chr17	2279618	rs118187687	A	C	1867.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:25,78:0.76:103
chr17	2279621	rs2429916	A	G	381.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.645;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=5.017;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.82;ReadPosRankSum=1.118;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:76,24:0.24:100
chr17	2297571	.	G	GCACA	2161.73	.	AC=1;AF=0.500;AN=2;DP=209;set=Intersection	GT:AD:AF:DP	0/1:74,69:0.48:143
chr17	2318695	rs4790335	G	A	2223.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.429;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.40;ReadPosRankSum=0.062;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:68,98:0.59:166
chr17	2323517	rs17834783	C	T	4696.77	.	AC=1;AF=0.500;AN=2;DB;DP=894;set=Intersection	GT:AD:AF:DP	0/1:614,273:0.31:887
chr17	2323953	rs11427343	T	TA	201.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.757;ClippingRankSum=0.000;DB;DP=225;ExcessHet=3.0103;FS=0.748;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=0.000;QD=1.05;ReadPosRankSum=-0.039;SOR=0.810;set=HC	GT:AD:AF:DP	0/1:152,40:0.21:192
chr17	2371000	rs10163513	G	A	723.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:99,42:0.30:141
chr17	2595215	rs5818873	GC	G	2517.73	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:1,84:0.99:85
chr17	2595248	.	CCGCCACGCCCCCGCCCCGCCCCCGCCCCCGCCA	C	1139.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.095;ClippingRankSum=0.000;DP=92;ExcessHet=3.0103;FS=1.338;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.68;ReadPosRankSum=-0.133;SOR=0.438;set=HC	GT:AD:AF:DP	0/1:29,32:0.52:61
chr17	2595250	.	G	GC	656.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.254;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=11.223;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.13;ReadPosRankSum=-0.149;SOR=3.229;set=HC	GT:AD:AF:DP	0/1:32,18:0.36:50
chr17	2595253	.	A	C	707.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.862;ClippingRankSum=0.000;DP=72;ExcessHet=3.0103;FS=6.279;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.88;ReadPosRankSum=-0.842;SOR=1.955;set=HC	GT:AD:AF:DP	0/1:32,19:0.37:51
chr17	2595276	rs371974984	CCGCCA	C	804.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.348;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.63;ReadPosRankSum=-0.513;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:32,23:0.42:55
chr17	2595291	rs62068251	C	T	2765.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr17	2595964	rs2302199	G	A	1674.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:87,80:0.48:167
chr17	2597723	rs66960934	GCAGCGGGGACA	G	4420.73	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:2,161:0.99:163
chr17	2598627	rs1003398	T	C	16871.77	.	AC=2;AF=1.00;AN=2;DB;DP=624;set=Intersection	GT:AD:AF:DP	1/1:2,618:1.00:620
chr17	2598639	rs1003399	C	G	16743.77	.	AC=2;AF=1.00;AN=2;DB;DP=635;set=Intersection	GT:AD:AF:DP	1/1:1,626:1.00:627
chr17	2599612	rs2302200	C	G	5083.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr17	2604375	rs758417	C	T	3114.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr17	2605528	rs375237892	AAC	A	54.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.066;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.33;ReadPosRankSum=-1.051;SOR=0.323;set=HC	GT:AD:AF:DP	0/1:35,6:0.15:41
chr17	2606715	rs1065479	G	A	15347.77	.	AC=2;AF=1.00;AN=2;DB;DP=588;set=Intersection	GT:AD:AF:DP	1/1:0,577:1.00:577
chr17	2607560	rs12953041	A	G	3018.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr17	2699935	rs123059	T	C	2132.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr17	2703764	rs11869022	C	G	3805.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:65,169:0.72:234
chr17	2865789	rs34224666	A	C	355.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:19,16:0.46:35
chr17	2868935	rs12950923	T	C	378.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:35,21:0.38:56
chr17	2883500	rs4790400	A	G	742.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:99,41:0.29:140
chr17	2883588	rs17762452	C	A	4032.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:94,188:0.67:282
chr17	2884545	rs7208690	A	G	890.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.224;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=1.988;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.71;ReadPosRankSum=-1.261;SOR=0.904;set=HC	GT:AD:AF:DP	0/1:133,56:0.30:189
chr17	2888249	rs112744093	A	AT	992.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.180;ClippingRankSum=0.000;DB;DP=280;ExcessHet=3.0103;FS=1.086;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.69;ReadPosRankSum=-0.681;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:188,81:0.30:269
chr17	2894569	rs8071529	C	G	770.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.403;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=0.633;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.85;ReadPosRankSum=0.222;SOR=0.798;set=HC	GT:AD:AF:DP	0/1:109,50:0.31:159
chr17	2908816	rs2289648	A	G	1643.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:166,86:0.34:252
chr17	2909414	.	CTTTTTTTTTTTTTT	C	898.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.744;ClippingRankSum=0.000;DP=77;ExcessHet=3.0103;FS=6.289;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.62;ReadPosRankSum=2.907;SOR=1.639;set=HC	GT:AD:AF:DP	0/1:27,24:0.47:51
chr17	2921210	rs56791699	C	CGT	823.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.291;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=0.612;QD=17.91;ReadPosRankSum=-0.806;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:11,35:0.76:46
chr17	2921251	rs8064800	A	G	2213.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr17	2923597	rs2304981	C	A	843.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr17	2923767	rs2304982	A	G	6622.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr17	2924011	rs4790416	T	C	1593.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr17	2929286	rs4072679	A	C	4666.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:83,203:0.71:286
chr17	2929392	rs55904912	G	A	4615.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:89,206:0.70:295
chr17	2929674	rs12941934	T	C	3940.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:97,167:0.63:264
chr17	2929950	rs35984185	C	A	490.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:70,26:0.27:96
chr17	2930223	rs4790114	T	C	2604.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:46,113:0.71:159
chr17	2930339	rs4790115	G	A	5153.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.013;ClippingRankSum=0.000;DB;DP=345;ExcessHet=3.0103;FS=0.418;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.98;ReadPosRankSum=0.494;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:110,234:0.68:344
chr17	2935577	rs4239038	T	G	78.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:28,6:0.18:34
chr17	2935591	rs4239039	T	C	1133.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr17	2965915	rs369118820	A	T	68.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.544;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=44.36;MQRankSum=0.163;QD=4.05;ReadPosRankSum=1.357;SOR=0.382;set=HC	GT:AD:AF:DP	0/1:12,5:0.29:17
chr17	2965929	rs201358221	G	A	92.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.902;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=43.49;MQRankSum=0.266;QD=4.64;ReadPosRankSum=1.427;SOR=0.392;set=HC	GT:AD:AF:DP	0/1:14,6:0.30:20
chr17	2965945	rs182442561	C	T	220.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.646;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=42.36;MQRankSum=-0.211;QD=8.49;ReadPosRankSum=-0.370;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:16,10:0.38:26
chr17	2965978	rs370377496	A	G	379.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.092;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=41.24;MQRankSum=0.140;QD=8.83;ReadPosRankSum=-0.522;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:26,17:0.40:43
chr17	2966032	rs202049082	C	G	2587.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.147;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=1.199;MLEAC=1;MLEAF=0.500;MQ=44.74;MQRankSum=-1.815;QD=21.04;ReadPosRankSum=0.822;SOR=0.521;set=HC	GT:AD:AF:DP	0/1:30,93:0.76:123
chr17	2966154	rs145256155	G	A	188.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.271;ClippingRankSum=0.000;DB;DP=601;ExcessHet=3.0103;FS=1.793;MLEAC=1;MLEAF=0.500;MQ=53.25;MQRankSum=0.508;QD=0.31;ReadPosRankSum=1.085;SOR=0.942;set=HC	GT:AD:AF:DP	0/1:529,72:0.12:601
chr17	2966173	rs61752193	G	C	4831.77	.	AC=1;AF=0.500;AN=2;DB;DP=635;set=Intersection	GT:AD:AF:DP	0/1:389,244:0.39:633
chr17	2966191	rs61752194	G	A	5301.77	.	AC=1;AF=0.500;AN=2;DB;DP=653;set=Intersection	GT:AD:AF:DP	0/1:391,262:0.40:653
chr17	2966273	rs2676567	G	A	7750.77	.	AC=1;AF=0.500;AN=2;DB;DP=777;set=Intersection	GT:AD:AF:DP	0/1:421,354:0.46:775
chr17	2966308	rs2855605	C	T	8773.77	.	AC=1;AF=0.500;AN=2;DB;DP=895;set=Intersection	GT:AD:AF:DP	0/1:469,423:0.47:892
chr17	3101076	rs2241092	G	C	6683.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;MQ=59.97;set=Intersection	GT:AD:AF:DP	1/1:1,228:1.00:229
chr17	3101590	rs2469791	C	T	6621.77	.	AC=1;AF=0.500;AN=2;DB;DP=470;set=Intersection	GT:AD:AF:DP	0/1:160,295:0.65:455
chr17	3119008	rs4325604	T	C	4805.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr17	3119397	rs769425	G	T	3693.77	.	AC=1;AF=0.500;AN=2;DB;DP=630;set=Intersection	GT:AD:AF:DP	0/1:423,204:0.33:627
chr17	3119611	rs17762735	G	A	2900.77	.	AC=1;AF=0.500;AN=2;DB;DP=515;set=Intersection	GT:AD:AF:DP	0/1:346,166:0.32:512
chr17	3119673	rs769426	A	G	5564.77	.	AC=1;AF=0.500;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	0/1:146,250:0.63:396
chr17	3119767	rs769427	C	T	4024.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:101,174:0.63:275
chr17	3119871	rs17174920	C	T	1455.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:31,61:0.66:92
chr17	3143983	rs200686480	A	G	3073.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.563;ClippingRankSum=0.000;DB;DP=407;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.66;MQRankSum=-11.103;QD=7.55;ReadPosRankSum=-0.351;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:249,158:0.39:407
chr17	3144483	.	T	C	83.03	.	AC=2;AF=1.00;AN=2;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=38.33;QD=20.76;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr17	3181555	rs2013809	A	G	3297.77	.	AC=1;AF=0.500;AN=2;DB;DP=654;set=Intersection	GT:AD:AF:DP	0/1:435,199:0.31:634
chr17	3181662	rs9901356	G	C	2364.77	.	AC=1;AF=0.500;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	0/1:243,130:0.35:373
chr17	3182309	rs2014057	GT	AG	1062.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;JOINED;set=Intersection	GT:AD:AF:DP	0/1:66,31:0.32:97
chr17	3213545	rs8071097	G	C	735.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:102,41:0.29:143
chr17	3213728	rs9905684	A	G	2104.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.641;ClippingRankSum=0.000;DB;DP=467;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.59;ReadPosRankSum=0.106;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:329,130:0.28:459
chr17	3213862	rs9905086	C	G	1977.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.236;ClippingRankSum=0.000;DB;DP=361;ExcessHet=3.0103;FS=3.728;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.54;ReadPosRankSum=0.992;SOR=0.893;set=HC	GT:AD:AF:DP	0/1:248,109:0.31:357
chr17	3213911	rs9903671	G	C	1894.77	.	AC=1;AF=0.500;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	0/1:233,103:0.31:336
chr17	3213962	rs9906179	A	G	1855.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.451;ClippingRankSum=0.000;DB;DP=390;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.83;ReadPosRankSum=-0.584;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:271,113:0.29:384
chr17	3214106	rs9911226	C	A	2763.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.623;ClippingRankSum=0.000;DB;DP=598;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.71;ReadPosRankSum=0.064;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:419,168:0.29:587
chr17	3214128	rs9912090	A	G	2474.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.089;ClippingRankSum=0.000;DB;DP=549;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.58;ReadPosRankSum=1.725;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:397,143:0.26:540
chr17	3324004	rs146946227	C	T	1769.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=32.77;SOR=6.593;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr17	3324086	rs227788	G	A	679.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=28.32;SOR=4.091;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	3324255	rs769432	C	T	2016.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.91;QD=26.19;SOR=1.936;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr17	3336162	rs11867612	T	C	1366.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:31,63:0.67:94
chr17	3336260	rs61739591	A	G	1758.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:39,74:0.65:113
chr17	3337057	rs769431	A	G	2716.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:70,115:0.62:185
chr17	3349634	rs34586104	C	CTT	181.73	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:7,4:0.36:11
chr17	3352309	rs11556563	T	C	7401.77	.	AC=1;AF=0.500;AN=2;DB;DP=544;set=Intersection	GT:AD:AF:DP	0/1:187,349:0.65:536
chr17	3397702	rs12948217	C	T	1793.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:219,106:0.33:325
chr17	3417123	rs906418	C	T	2357.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr17	3418119	rs10579788	AGTT	A	1345.73	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:15,34:0.69:49
chr17	3419689	rs8081785	CA	TG	4921.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;JOINED;set=Intersection	GT:AD:AF:DP	1/1:2,174:0.99:176
chr17	3422032	rs7216486	G	A	1015.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.273;ClippingRankSum=0.000;DB;DP=256;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.01;ReadPosRankSum=0.018;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:185,68:0.27:253
chr17	3424183	rs8079980	A	G	1027.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr17	3424507	rs925101	T	C	170.74	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:1,8:0.89:9
chr17	3427442	rs62069862	A	G	1577.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:26,57:0.69:83
chr17	3430271	rs11657715	A	G	1547.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:27,67:0.71:94
chr17	3435935	rs454738	C	A	1691.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:36,65:0.64:101
chr17	3436080	rs395357	C	T	6929.77	.	AC=1;AF=0.500;AN=2;DB;DP=541;set=Intersection	GT:AD:AF:DP	0/1:223,316:0.59:539
chr17	3445901	rs11078458	T	G	3111.77	.	AC=1;AF=0.500;AN=2;DB;DP=571;set=Intersection	GT:AD:AF:DP	0/1:388,180:0.32:568
chr17	3446885	rs322937	T	C	8696.77	.	AC=1;AF=0.500;AN=2;DB;DP=555;set=Intersection	GT:AD:AF:DP	0/1:157,384:0.71:541
chr17	3447914	rs1039519	C	T	452.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:94,31:0.25:125
chr17	3448434	rs9911213	A	G	879.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:109,50:0.31:159
chr17	3449726	rs34223256	ACT	A	91.73	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:27,5:0.16:32
chr17	3449808	rs62069871	T	G	609.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.827;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.989;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.44;ReadPosRankSum=1.469;SOR=0.515;set=HC	GT:AD:AF:DP	0/1:62,20:0.24:82
chr17	3449810	rs62069872	G	A	631.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.958;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=2.158;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.35;ReadPosRankSum=1.821;SOR=0.439;set=HC	GT:AD:AF:DP	0/1:66,20:0.23:86
chr17	3449817	rs62069873	G	A	622.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.957;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.63;ReadPosRankSum=2.017;SOR=0.609;set=HC	GT:AD:AF:DP	0/1:73,21:0.22:94
chr17	3449907	rs423431	T	C	326.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.256;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=1.819;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.00;ReadPosRankSum=-1.084;SOR=0.503;set=HC	GT:AD:AF:DP	0/1:83,26:0.24:109
chr17	3457954	rs11453205	T	TG	603.73	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:60,30:0.33:90
chr17	3458072	rs322965	T	C	7262.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr17	3475018	rs224547	A	G	1088.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:104,56:0.35:160
chr17	3475367	rs224548	T	G	3426.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr17	3475405	rs224549	C	T	5247.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr17	3475564	rs224550	C	T	6747.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.08;SOR=1.078;set=HC	GT:AD:AF:DP	1/1:0,187:1.00:187
chr17	3475564	.	CA	TA,TC	962	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.47;FR=0.5000,0.5000;HP=3;HapScore=2;MGOF=3;MMLQ=24;MQ=60.0;NF=39,21;NR=75,47;PP=621,962;QD=5.75237905743;SC=ACACCAAGGGCAGAGGAGCTG;SbPval=0.53;Source=Platypus;TC=114;TCF=39;TCR=75;TR=114,68;WE=3475573;WS=3475554;set=Platypus	GT:AF:DP	0/1:1.00:114
chr17	3475565	rs877611	A	C	2194.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.662;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=4.359;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.99;ReadPosRankSum=-0.152;SOR=1.006;set=HC	GT:AD:AF:DP	0/1:78,105:0.57:183
chr17	3476826	rs11441416	G	GC	730.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr17	3476832	rs2456855	A	C	1186.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.09;SOR=4.047;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr17	3480396	rs8078936	C	T	2184.77	.	AC=1;AF=0.500;AN=2;DB;DP=520;set=Intersection	GT:AD:AF:DP	0/1:374,144:0.28:518
chr17	3480447	rs8065080	T	C	2143.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.206;ClippingRankSum=0.000;DB;DP=552;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.89;ReadPosRankSum=0.752;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:405,146:0.26:551
chr17	3489249	rs3744686	C	T	2421.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:47,104:0.69:151
chr17	3492002	rs161390	A	G	945.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr17	3492107	rs58427247	T	TA	854.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.322;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=1.001;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.18;ReadPosRankSum=0.495;SOR=0.518;set=HC	GT:AD:AF:DP	0/1:24,60:0.71:84
chr17	3492319	rs7220415	C	A	1480.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr17	3493200	rs222747	C	G	16226.77	.	AC=2;AF=1.00;AN=2;DB;DP=598;set=Intersection	GT:AD:AF:DP	1/1:0,593:1.00:593
chr17	3493533	rs161387	A	G	8038.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr17	3495391	rs55916885	T	C	543.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.357;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.97;ReadPosRankSum=1.346;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:100,37:0.27:137
chr17	3513719	rs465563	G	A	1132.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr17	3514028	rs224496	G	C	10763.77	.	AC=2;AF=1.00;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	1/1:0,391:1.00:391
chr17	3552038	rs222778	G	A	680.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:72,34:0.32:106
chr17	3553526	rs161350	A	G	2976.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr17	3558417	rs459613	C	G	7113.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr17	3558695	rs457419	A	G	453.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:33,22:0.40:55
chr17	3558698	rs467277	G	A	1171.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.567;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=6.755;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.70;ReadPosRankSum=-0.708;SOR=2.128;set=HC	GT:AD:AF:DP	0/1:22,32:0.59:54
chr17	3558698	.	GCG	ACA	2232	.	AC=1;AF=0.500;AN=2;BRF=0.24;FR=0.5000;HP=2;HapScore=3;MGOF=0;MMLQ=28;MQ=60.0;NF=0;NR=27;PP=2232;QD=84.6469583282;SC=TAGGAGCAGGGCGTTCCAGCA;SbPval=1.0;Source=Platypus;TC=49;TCF=5;TCR=44;TR=27;WE=3558708;WS=3558685;set=Platypus	GT:AD:AF:DP	1/0:22,27:0.55:49
chr17	3558700	rs12938401	G	A	1171.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.440;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=14.981;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.44;ReadPosRankSum=0.642;SOR=4.082;set=HC	GT:AD:AF:DP	0/1:22,28:0.56:50
chr17	3559823	rs1800528	G	A	3669.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:93,163:0.64:256
chr17	3561396	rs161400	C	T	3974.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr17	3563339	rs222753	C	T	444.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:31,22:0.42:53
chr17	3564068	rs760273	G	A	4308.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.968;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=0.685;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.62;ReadPosRankSum=0.389;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:45,111:0.71:156
chr17	3564073	rs3826496	A	G	4232.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.232;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=0.703;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.99;ReadPosRankSum=1.207;SOR=0.809;set=HC	GT:AD:AF:DP	0/1:43,103:0.71:146
chr17	3564084	rs760274	T	C	3862.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:33,91:0.73:124
chr17	3566857	rs11541134	C	T	605.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr17	3567461	rs2235107	G	A	8808.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr17	3568012	rs8278	A	G	9277.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	1/1:0,348:1.00:348
chr17	3577273	rs160587	A	G	2460.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:1,94:0.99:95
chr17	3585283	rs117935905	G	A	2608.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:78,121:0.61:199
chr17	3593074	rs220486	A	G	748.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr17	3594276	rs3215407	TG	T	7442.73	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr17	3626816	rs16953429	G	A	2386.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr17	3634629	rs78134599	CTTTTTTTTTTTT	C	3073.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.690;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=6.842;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=0.283;QD=38.42;ReadPosRankSum=1.406;SOR=2.747;set=HC	GT:AD:AF:DP	1/1:2,78:0.97:80
chr17	3635645	rs170209	A	G	3283.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr17	3638037	rs184335	C	T	693.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:14,29:0.67:43
chr17	3638344	rs9674606	G	A	2871.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:61,128:0.68:189
chr17	3646977	rs10642081	C	CTT	500.73	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:8,18:0.69:26
chr17	3649214	rs1183610	G	A	7242.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr17	3657159	rs2272606	C	T	18376.77	.	AC=2;AF=1.00;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	1/1:0,424:1.00:424
chr17	3657175	rs220479	T	C	17960.77	.	AC=2;AF=1.00;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	1/1:0,413:1.00:413
chr17	3658358	rs3833165	A	AGGCCCCGCCCTCATCAGGT	2320.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.95;QD=82.88;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr17	3664477	rs10687117	A	AATT	5626.73	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr17	3665116	rs8080482	A	G	2681.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr17	3665160	rs220471	C	G	4690.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr17	3687533	rs55722017	A	G	1064.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr17	3704483	rs3809805	G	A	2798.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:76,121:0.61:197
chr17	3717896	rs9897428	A	T	30.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.698;ClippingRankSum=0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.37;ReadPosRankSum=-0.114;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:10,3:0.23:13
chr17	3728903	rs12940049	T	A	269.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:28,13:0.32:41
chr17	3746537	rs5818919	C	CT	337.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.748;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=2.381;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.93;ReadPosRankSum=-0.918;SOR=0.389;set=HC	GT:AD:AF:DP	0/1:55,31:0.36:86
chr17	3775848	rs7214723	T	C	1823.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:198,102:0.34:300
chr17	3775916	rs7214864	T	C	6557.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr17	3776555	rs34231122	T	C	1803.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:49,74:0.60:123
chr17	3776867	rs9904678	C	T	594.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.874;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=0.966;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.54;ReadPosRankSum=1.182;SOR=0.510;set=HC	GT:AD:AF:DP	0/1:96,35:0.27:131
chr17	3783872	rs11651131	T	C	1334.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:27,56:0.67:83
chr17	3801080	rs711174	C	T	557.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:16,23:0.59:39
chr17	3818620	rs10852862	T	C	2172.77	.	AC=1;AF=0.500;AN=2;DB;DP=491;set=Intersection	GT:AD:AF:DP	0/1:358,131:0.27:489
chr17	3818788	rs2875751	G	A	1731.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:227,95:0.30:322
chr17	3818830	rs2325788	A	G	1866.77	.	AC=1;AF=0.500;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	0/1:238,106:0.31:344
chr17	3819002	rs11078475	T	C	1915.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:173,92:0.35:265
chr17	3844787	rs1800912	C	G	4039.77	.	AC=1;AF=0.500;AN=2;DB;DP=626;set=Intersection	GT:AD:AF:DP	0/1:402,215:0.35:617
chr17	3844985	rs17846890	A	C	728.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:74,42:0.36:116
chr17	3845927	rs17846889	A	G	1482.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.817;ClippingRankSum=0.000;DB;DP=232;ExcessHet=3.0103;FS=3.913;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.62;ReadPosRankSum=-0.170;SOR=0.479;set=HC	GT:AD:AF:DP	0/1:141,83:0.37:224
chr17	3846802	rs758641	A	G	1755.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.061;ClippingRankSum=0.000;DB;DP=398;ExcessHet=3.0103;FS=0.846;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.42;ReadPosRankSum=-0.951;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:285,112:0.28:397
chr17	3846899	rs757611	C	A	874.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:74,42:0.36:116
chr17	3848013	rs1800911	A	C	728.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.880;ClippingRankSum=0.000;DB;DP=217;ExcessHet=3.0103;FS=3.632;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.41;ReadPosRankSum=-0.450;SOR=0.528;set=HC	GT:AD:AF:DP	0/1:159,55:0.26:214
chr17	3848153	.	GTCCGCCTCTTGGCCCCGCCCCTAGGAGGGGGC	G	709.73	.	AC=1;AF=0.500;AN=2;DP=89;set=Intersection	GT:AD:AF:DP	0/1:45,21:0.32:66
chr17	3854840	rs2302298	G	C	62.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:27,7:0.21:34
chr17	3856615	rs1800915	A	G	817.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:156,57:0.27:213
chr17	3867571	rs887384	A	G	65.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.65;ReadPosRankSum=1.611;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:12,6:0.33:18
chr17	3947644	rs781831	T	C	2453.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:58,106:0.65:164
chr17	3985832	rs2727061	A	G	11581.77	.	AC=2;AF=1.00;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	1/1:0,424:1.00:424
chr17	3989636	.	AGCG	A	465.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.053;ClippingRankSum=0.000;DP=23;ExcessHet=3.0103;FS=2.682;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.25;ReadPosRankSum=-1.150;SOR=0.252;set=HC	GT:AD:AF:DP	0/1:3,20:0.87:23
chr17	3989639	.	G	A	20	.	AC=1;AF=0.500;AN=2;BRF=0.12;FR=0.5000;HP=1;HapScore=2;MGOF=16;MMLQ=21;MQ=60.0;NF=5;NR=0;PP=20;QD=10.9542425094;SC=TTCCCACAGCGGCAATCCCTT;SbPval=1.0;Source=Platypus;TC=21;TCF=18;TCR=3;TR=5;WE=3989647;WS=3989629;set=Platypus	GT:AD:AF:DP	1/0:16,5:0.24:21
chr17	3989642	.	AATCCCTTTCTGGGGGATTCCCACAGCG	A	462.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.159;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.51;ReadPosRankSum=-1.150;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:5,20:0.80:25
chr17	3989669	.	G	A	452	.	AC=2;AF=1.00;AN=2;BRF=0.3;FR=1.0000;HP=1;HapScore=2;MGOF=0;MMLQ=27;MQ=60.0;NF=17;NR=5;PP=452;QD=22.1259642067;SC=TTCCCACAGCGGCAATCCCTT;SbPval=0.58;Source=Platypus;TC=22;TCF=17;TCR=5;TR=22;WE=3989677;WS=3989659;set=Platypus	GT:AD:AF:DP	1/1:0,22:1.00:22
chr17	3989968	rs2727060	C	T	1655.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr17	3990634	.	T	TA	74.73	.	AC=1;AF=0.500;AN=2;DP=34;set=Intersection	GT:AD:AF:DP	0/1:22,9:0.29:31
chr17	3994170	rs2727075	T	C	6343.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr17	4005770	rs1869493	T	C	5922.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr17	4007875	rs9907500	C	T	463.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr17	4027036	rs11078481	C	G	689.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr17	4027392	rs7208760	G	C	1859.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr17	4045809	rs4239043	T	C	8013.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr17	4046101	rs1454121	A	G	5953.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:2,210:0.99:212
chr17	4046270	rs1454122	T	C	1939.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr17	4071302	rs4790583	G	C	2260.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr17	4071326	rs4790178	C	G	1637.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr17	4074261	rs897030	A	C	1162.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr17	4077485	rs4790585	G	A	981.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr17	4088291	rs2020118	C	T	4770.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr17	4098573	rs5818941	A	AT	5744.73	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:20,267:0.93:287
chr17	4166804	rs2325881	C	T	904.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:150,66:0.31:216
chr17	4192401	rs148114489	TACAC	T,TACACAC	858.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=38;set=Intersection	GT:AF:DP	1/2:0.43,0.50:30
chr17	4337283	rs35751906	G	A	577.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.493;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.35;ReadPosRankSum=0.352;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:76,32:0.30:108
chr17	4337412	rs3809853	C	G	2364.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.885;ClippingRankSum=0.000;DB;DP=472;ExcessHet=3.0103;FS=0.565;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.06;ReadPosRankSum=0.797;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:324,143:0.31:467
chr17	4350182	rs2047233	T	C	4874.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr17	4350367	rs2047232	A	G	9610.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr17	4350373	rs3055435	GGT	G	5409.73	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:2,183:0.99:185
chr17	4350407	rs2047231	G	C	3696.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr17	4351396	rs6502786	C	T	1967.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr17	4351450	.	G	C	1134.77	.	AC=1;AF=0.500;AN=2;DP=152;set=Intersection	GT:AD:AF:DP	0/1:97,54:0.36:151
chr17	4351560	rs12450838	G	A	5755.77	.	AC=1;AF=0.500;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	0/1:134,259:0.66:393
chr17	4351640	rs884250	G	A	13651.77	.	AC=2;AF=1.00;AN=2;DB;DP=517;set=Intersection	GT:AD:AF:DP	1/1:0,512:1.00:512
chr17	4352539	rs7224464	C	T	9602.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	1/1:0,356:1.00:356
chr17	4356375	rs11655342	G	T	5054.77	.	AC=1;AF=0.500;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	0/1:100,223:0.69:323
chr17	4382017	rs188467854	G	A	1131.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:21,44:0.68:65
chr17	4402803	rs184566	T	C	1451.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr17	4416638	rs9894697	G	A	1835.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.120;ClippingRankSum=0.000;DB;DP=523;ExcessHet=3.0103;FS=1.286;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.56;ReadPosRankSum=1.110;SOR=0.840;set=HC	GT:AD:AF:DP	0/1:386,129:0.25:515
chr17	4416674	rs7214270	T	C	2076.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.664;ClippingRankSum=0.000;DB;DP=562;ExcessHet=3.0103;FS=0.613;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.74;ReadPosRankSum=-1.599;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:422,133:0.24:555
chr17	4434489	rs62064929	C	T	2283.77	.	AC=1;AF=0.500;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	0/1:225,122:0.35:347
chr17	4434617	rs62064930	G	A	351.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:39,17:0.30:56
chr17	4436005	rs9892232	T	C	5132.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr17	4437214	rs4790202	C	T	849.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.080;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.88;ReadPosRankSum=-2.511;SOR=0.894;set=HC	GT:AD:AF:DP	0/1:28,38:0.58:66
chr17	4439313	rs1077200	A	G	2425.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr17	4439356	rs74592437	C	T	3027.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.374;ClippingRankSum=0.000;DB;DP=199;ExcessHet=3.0103;FS=1.207;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.61;ReadPosRankSum=-0.788;SOR=0.577;set=HC	GT:AD:AF:DP	0/1:113,81:0.42:194
chr17	4439366	rs75075518	C	T	3159.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.991;ClippingRankSum=0.000;DB;DP=219;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.77;ReadPosRankSum=-0.118;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:126,88:0.41:214
chr17	4439497	rs12945732	A	G	28052.77	.	AC=2;AF=1.00;AN=2;DB;DP=618;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.84;SOR=0.989;set=HC	GT:AD:AF:DP	1/1:0,612:1.00:612
chr17	4439501	rs1076071	C	G	28386.77	.	AC=2;AF=1.00;AN=2;DB;DP=640;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.70;SOR=0.957;set=HC	GT:AD:AF:DP	1/1:0,635:1.00:635
chr17	4439512	rs11658114	A	G	7774.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.246;ClippingRankSum=0.000;DB;DP=690;ExcessHet=3.0103;FS=0.564;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.32;ReadPosRankSum=-0.016;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:471,216:0.31:687
chr17	4439515	rs9908450	G	T	8132.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.186;ClippingRankSum=0.000;DB;DP=708;ExcessHet=3.0103;FS=0.564;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.54;ReadPosRankSum=0.182;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:485,220:0.31:705
chr17	4439532	rs1076072	T	C	8606.77	.	AC=1;AF=0.500;AN=2;DB;DP=837;set=Intersection	GT:AD:AF:DP	0/1:561,274:0.33:835
chr17	4439727	rs146210718	T	TG	1803.73	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:68,78:0.53:146
chr17	4439795	rs12945562	C	G	400.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.665;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=1.697;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.28;ReadPosRankSum=-1.306;SOR=0.273;set=HC	GT:AD:AF:DP	0/1:22,17:0.44:39
chr17	4442088	rs62064958	C	A	168.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:40,12:0.23:52
chr17	4443075	rs9905742	T	A	2106.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:238,110:0.32:348
chr17	4445085	rs62066360	G	A	2255.77	.	AC=1;AF=0.500;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	0/1:272,124:0.31:396
chr17	4446580	.	C	T	78.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.493;ClippingRankSum=0.000;DP=75;ExcessHet=3.0103;FS=1.176;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.09;ReadPosRankSum=0.629;SOR=0.489;set=HC	GT:AD:AF:DP	0/1:59,13:0.18:72
chr17	4448853	rs2306267	C	T	1298.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr17	4455500	rs7206974	T	C	17288.77	.	AC=2;AF=1.00;AN=2;DB;DP=663;set=Intersection	GT:AD:AF:DP	1/1:0,661:1.00:661
chr17	4458302	rs1871348	C	A	21525.77	.	AC=2;AF=1.00;AN=2;DB;DP=802;set=Intersection	GT:AD:AF:DP	1/1:0,794:1.00:794
chr17	4458314	rs1871347	C	T	19582.77	.	AC=2;AF=1.00;AN=2;DB;DP=716;set=Intersection	GT:AD:AF:DP	1/1:0,709:1.00:709
chr17	4463023	rs11657054	G	A	2988.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr17	4495740	rs12449695	G	A	493.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:83,32:0.28:115
chr17	4497160	rs8080130	T	C	7030.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr17	4498641	rs12939239	A	G	1998.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:38,83:0.69:121
chr17	4498682	rs4790655	C	G	2079.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr17	4500072	rs9906333	A	G	158.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:7,9:0.56:16
chr17	4500304	rs72634012	C	T	483.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:63,27:0.30:90
chr17	4510600	rs35090819	C	CT	2301.73	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:131,80:0.38:211
chr17	4534834	rs916055	A	G	138.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:29,10:0.26:39
chr17	4535385	rs2619112	A	G	10326.77	.	AC=1;AF=0.500;AN=2;DB;DP=659;set=Intersection	GT:AD:AF:DP	0/1:210,440:0.68:650
chr17	4535413	rs6502804	T	C	9348.77	.	AC=1;AF=0.500;AN=2;DB;DP=624;set=Intersection	GT:AD:AF:DP	0/1:198,417:0.68:615
chr17	4541744	rs899452	T	C	1067.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr17	4542717	rs11078528	G	A	2229.77	.	AC=1;AF=0.500;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	0/1:217,122:0.36:339
chr17	4544729	rs9906597	A	G	6226.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr17	4544978	rs369435246	G	GAGA	5877.73	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr17	4545581	rs2255888	C	T	1473.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:228,95:0.29:323
chr17	4575283	rs3862485	A	G	4290.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr17	4577112	rs11658808	G	A	2504.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:2,88:0.98:90
chr17	4578007	rs4790673	C	G	19087.77	.	AC=2;AF=1.00;AN=2;DB;DP=699;set=Intersection	GT:AD:AF:DP	1/1:0,694:1.00:694
chr17	4579638	rs8071990	G	A	4864.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:2,176:0.99:178
chr17	4580137	rs6502806	A	G	7701.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr17	4580224	rs11078530	C	T	3383.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr17	4586253	rs34352526	GA	G	2664.73	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr17	4594847	rs7226084	T	C	1619.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr17	4620497	rs7208257	C	T	9885.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:0,365:1.00:365
chr17	4622071	rs2036656	C	G	2869.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.76;SOR=1.528;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr17	4622077	.	C	CTT	497.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.424;ClippingRankSum=0.000;DP=76;ExcessHet=3.0103;FS=3.448;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.31;ReadPosRankSum=1.304;SOR=0.260;set=HC	GT:AD:AF:DP	0/1:13,31:0.70:44
chr17	4622638	rs1045280	C	T	18375.77	.	AC=2;AF=1.00;AN=2;DB;DP=704;set=Intersection	GT:AD:AF:DP	1/1:0,696:1.00:696
chr17	4636565	rs8123	T	G	389.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:24,18:0.43:42
chr17	4638010	rs3744700	T	G	2031.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.485;ClippingRankSum=0.000;DB;DP=450;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.56;ReadPosRankSum=0.989;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:324,122:0.27:446
chr17	4638484	rs1876444	T	C	2586.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:75,116:0.61:191
chr17	4641755	rs1050997	C	T	1556.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:46,69:0.60:115
chr17	4642069	rs2250333	A	G	3670.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:78,153:0.66:231
chr17	4644491	rs9903643	A	G	1488.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr17	4645324	rs3826517	T	C	11640.77	.	AC=2;AF=1.00;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	1/1:2,440:1.00:442
chr17	4646480	rs12451720	C	T	267.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.331;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=2.862;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.18;ReadPosRankSum=-2.601;SOR=0.332;set=HC	GT:AD:AF:DP	0/1:47,17:0.27:64
chr17	4646533	rs369534237	C	CAA	618.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.274;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=0.872;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.24;ReadPosRankSum=-2.073;SOR=0.572;set=HC	GT:AD:AF:DP	0/1:97,49:0.34:146
chr17	4647002	rs8082690	A	G	1455.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:101,72:0.42:173
chr17	4649030	.	G	GCCCCTGGGAGCCCCGA	927.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.765;ClippingRankSum=0.000;DP=77;ExcessHet=3.0103;FS=2.593;MLEAC=1;MLEAF=0.500;MQ=60.84;MQRankSum=3.984;QD=14.27;ReadPosRankSum=0.000;SOR=1.136;set=HC	GT:AD:AF:DP	0/1:46,19:0.29:65
chr17	4684095	rs13520	G	A	1205.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:107,69:0.39:176
chr17	4686340	rs3853643	TT	GG	13624.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr17	4686414	rs3851	A	C	832.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:90,40:0.31:130
chr17	4686463	rs3217068	A	ACGCCTACCTGGCT	557.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.348;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=10.543;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.96;ReadPosRankSum=-2.264;SOR=2.998;set=HC	GT:AD:AF:DP	0/1:39,17:0.30:56
chr17	4688996	rs2279962	A	C	2709.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:35,109:0.76:144
chr17	4689194	rs3215170	AC	A	2165.73	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:139,78:0.36:217
chr17	4689572	rs4790706	T	C	2539.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.772;ClippingRankSum=0.000;DB;DP=441;ExcessHet=3.0103;FS=0.563;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.81;ReadPosRankSum=2.400;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:297,140:0.32:437
chr17	4693054	rs12951761	G	A	9436.77	.	AC=1;AF=0.500;AN=2;DB;DP=679;set=Intersection	GT:AD:AF:DP	0/1:247,428:0.63:675
chr17	4693170	rs34850425	T	C	4042.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr17	4693342	rs35910358	C	A	3173.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr17	4693508	rs34421346	G	C	3283.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr17	4699552	rs3169950	G	A	3946.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:80,177:0.69:257
chr17	4699947	rs2241933	T	G	5618.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr17	4700621	rs60892224	A	G	520.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.941;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.35;ReadPosRankSum=1.873;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:55,27:0.33:82
chr17	4701019	rs2304975	C	T	2267.77	.	AC=1;AF=0.500;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	0/1:241,122:0.34:363
chr17	4710957	rs3867173	G	T	852.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr17	4711798	rs2302327	C	T	162.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:27,11:0.29:38
chr17	4712314	rs3786043	G	A	2658.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:67,123:0.65:190
chr17	4712617	rs2286672	C	T	1675.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.654;ClippingRankSum=0.000;DB;DP=340;ExcessHet=3.0103;FS=1.435;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.00;ReadPosRankSum=0.267;SOR=0.771;set=HC	GT:AD:AF:DP	0/1:239,96:0.29:335
chr17	4712757	rs2286671	G	A	4118.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:117,177:0.60:294
chr17	4714021	rs3081314	G	GGAAA	5229.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.037;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=28.89;ReadPosRankSum=-0.789;SOR=0.929;set=HC	GT:AD:AF:DP	1/1:3,178:0.98:181
chr17	4718776	rs1132448	G	A	5670.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr17	4720469	rs1052748	C	T	10630.77	.	AC=1;AF=0.500;AN=2;DB;DP=803;set=Intersection	GT:AD:AF:DP	0/1:297,497:0.63:794
chr17	4722299	rs2326097	T	C	2189.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr17	4722606	rs3764899	G	A	1063.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:130,57:0.30:187
chr17	4722876	rs3764897	G	A	1164.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.636;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=3.414;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.88;ReadPosRankSum=0.277;SOR=0.969;set=HC	GT:AD:AF:DP	0/1:127,71:0.36:198
chr17	4724936	rs4790233	T	G	286.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.341;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.75;MQRankSum=0.815;QD=6.52;ReadPosRankSum=0.015;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:34,10:0.23:44
chr17	4724942	rs4790234	A	G	329.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.541;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=1.359;MLEAC=1;MLEAF=0.500;MQ=59.77;MQRankSum=0.872;QD=7.02;ReadPosRankSum=-0.426;SOR=0.457;set=HC	GT:AD:AF:DP	0/1:35,12:0.26:47
chr17	4725211	rs79836609	T	C	676.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.385;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=1.507;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.64;ReadPosRankSum=0.455;SOR=0.838;set=HC	GT:AD:AF:DP	0/1:106,40:0.27:146
chr17	4736838	rs75987362	G	A	588.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:79,35:0.31:114
chr17	4737042	rs75002361	T	C	372.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:25,16:0.39:41
chr17	4750573	rs9890271	G	A	695.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:9,28:0.76:37
chr17	4758174	rs73341669	C	A	5674.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr17	4778487	rs8078776	G	A	2263.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:51,99:0.66:150
chr17	4790801	rs3214299	G	GC	1616.73	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:145,62:0.30:207
chr17	4795307	rs2586532	C	T	2490.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:63,110:0.64:173
chr17	4795619	rs36079581	TG	T	2267.73	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr17	4796274	rs11556634	T	C	1622.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.483;ClippingRankSum=0.000;DB;DP=460;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.54;ReadPosRankSum=-0.798;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:348,110:0.24:458
chr17	4796286	rs11556635	C	T	1427.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.394;ClippingRankSum=0.000;DB;DP=446;ExcessHet=3.0103;FS=0.620;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.21;ReadPosRankSum=-0.725;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:340,105:0.24:445
chr17	4796441	rs77185535	G	C	663.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:92,37:0.29:129
chr17	4796521	rs3815382	T	G	1331.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.187;ClippingRankSum=0.000;DB;DP=265;ExcessHet=3.0103;FS=2.311;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.14;ReadPosRankSum=-1.532;SOR=0.532;set=HC	GT:AD:AF:DP	0/1:179,80:0.31:259
chr17	4797305	rs2302319	G	A	2075.77	.	AC=1;AF=0.500;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	0/1:235,113:0.32:348
chr17	4799897	rs2302318	C	T	2006.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:164,106:0.39:270
chr17	4800290	rs2302317	C	T	1083.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:122,50:0.29:172
chr17	4800304	rs2302316	G	A	1379.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:147,64:0.30:211
chr17	4802255	rs147753790	GGCCTCTGCCTCGCTCCACCC	G	2747.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.781;ClippingRankSum=0.000;DB;DP=312;ExcessHet=3.0103;FS=2.834;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=3.217;QD=9.31;ReadPosRankSum=0.426;SOR=0.872;set=HC	GT:AD:AF:DP	0/1:212,83:0.28:295
chr17	4802447	rs75492003	G	A	1653.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.364;ClippingRankSum=0.000;DB;DP=304;ExcessHet=3.0103;FS=0.451;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.53;ReadPosRankSum=-0.190;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:205,94:0.31:299
chr17	4806052	rs4790235	C	A	2871.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:58,122:0.68:180
chr17	4806249	rs12602789	C	T	2379.77	.	AC=1;AF=0.500;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	0/1:311,137:0.31:448
chr17	4835852	rs81663	A	T	3500.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:42,133:0.76:175
chr17	4837117	.	AAGCCCGACCACCCCAGAGCCCACCTCAGAGCCCGCCCCCAGCCCGACCACCCCGGAGCCCACCTCAGAGCCCGCCCCC	A	680.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.394;ClippingRankSum=0.000;DP=305;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.78;MQRankSum=0.952;QD=7.56;ReadPosRankSum=-0.196;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:70,20:0.22:90
chr17	4837171	.	GGAGCCCACCTCAGAGCCCGCCCCCAGCCCGACCACCCCA	G	1407.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.765;ClippingRankSum=0.000;DP=294;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.77;MQRankSum=-1.129;QD=18.28;ReadPosRankSum=2.536;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:23,54:0.70:77
chr17	4837952	rs199616811	A	AG	1730.73	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr17	4845768	rs238247	G	A	5210.77	.	AC=1;AF=0.500;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	0/1:118,231:0.66:349
chr17	4856376	rs238238	A	G	3954.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:118,168:0.59:286
chr17	4856580	rs238239	T	C	5287.77	.	AC=1;AF=0.500;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	0/1:118,245:0.67:363
chr17	4859102	.	T	TTGTCTCTGCTC	2248.73	.	AC=1;AF=0.500;AN=2;DP=106;set=Intersection	GT:AD:AF:DP	0/1:24,60:0.71:84
chr17	4859156	.	CCTGTCTCTGCT	C	363.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.403;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=1.580;MLEAC=1;MLEAF=0.500;MQ=61.82;MQRankSum=0.000;QD=14.55;ReadPosRankSum=-1.995;SOR=0.934;set=HC	GT:AD:AF:DP	0/1:13,12:0.48:25
chr17	4862961	rs80259031	G	A	4467.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:123,199:0.62:322
chr17	4863410	rs238224	A	G	4744.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:95,199:0.68:294
chr17	4864114	rs61749470	T	C	4205.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:88,185:0.68:273
chr17	4875566	rs238230	T	C	6894.77	.	AC=1;AF=0.500;AN=2;DB;DP=497;set=Intersection	GT:AD:AF:DP	0/1:161,325:0.67:486
chr17	4877120	rs238229	G	A	5016.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:122,223:0.65:345
chr17	4877886	rs117624857	G	A	2107.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:53,89:0.63:142
chr17	4881776	rs376516	C	G	3165.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:92,149:0.62:241
chr17	4882952	rs1859434	G	A	1904.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.338;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=4.971;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.49;ReadPosRankSum=-0.444;SOR=1.203;set=HC	GT:AD:AF:DP	0/1:44,79:0.64:123
chr17	4883818	rs238234	C	G	1841.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.019;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=0.794;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.35;ReadPosRankSum=-0.117;SOR=0.555;set=HC	GT:AD:AF:DP	0/1:40,80:0.67:120
chr17	4885982	rs238233	G	A	1136.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:23,45:0.66:68
chr17	4886037	rs238232	A	G	2878.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:50,126:0.72:176
chr17	4906146	rs146311497	GCC	G	1012.73	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:10,32:0.76:42
chr17	4923757	rs28600139	G	A	3123.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:54,131:0.71:185
chr17	4924005	rs28446740	C	T	6293.77	.	AC=1;AF=0.500;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	0/1:157,280:0.64:437
chr17	4925475	rs148934699	C	T	2587.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:72,115:0.61:187
chr17	4926126	rs35748479	C	T	412.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:42,22:0.34:64
chr17	4926882	rs346828	A	G	823.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:147,54:0.27:201
chr17	4936336	rs72822610	A	T	8806.77	.	AC=1;AF=0.500;AN=2;DB;DP=573;set=Intersection	GT:AD:AF:DP	0/1:190,377:0.66:567
chr17	4936898	rs2304445	C	T	2413.77	.	AC=1;AF=0.500;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	0/1:295,135:0.31:430
chr17	4937575	rs346822	T	C	14461.77	.	AC=2;AF=1.00;AN=2;DB;DP=548;set=Intersection	GT:AD:AF:DP	1/1:0,544:1.00:544
chr17	5012129	rs117970771	C	T	934.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:88,50:0.36:138
chr17	5012615	rs149824709	C	T	2253.77	.	AC=1;AF=0.500;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	0/1:282,116:0.29:398
chr17	5015226	rs141582736	C	T	2824.77	.	AC=1;AF=0.500;AN=2;DB;DP=442;set=Intersection	GT:AD:AF:DP	0/1:277,158:0.36:435
chr17	5036161	rs73976312	G	A	62.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.755;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=8.891;MLEAC=1;MLEAF=0.500;MQ=59.63;MQRankSum=-7.410;QD=0.49;ReadPosRankSum=-5.394;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:109,19:0.15:128
chr17	5036191	rs75631218	G	A	1994.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.426;ClippingRankSum=0.000;DB;DP=238;ExcessHet=3.0103;FS=7.473;MLEAC=1;MLEAF=0.500;MQ=59.13;MQRankSum=-8.894;QD=8.49;ReadPosRankSum=-3.918;SOR=0.552;set=HC	GT:AD:AF:DP	0/1:174,61:0.26:235
chr17	5036205	rs80328123	A	C	2842.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.048;ClippingRankSum=0.000;DB;DP=299;ExcessHet=3.0103;FS=3.612;MLEAC=1;MLEAF=0.500;MQ=58.92;MQRankSum=-10.209;QD=9.60;ReadPosRankSum=-2.541;SOR=0.497;set=HC	GT:AD:AF:DP	0/1:213,83:0.28:296
chr17	5036210	.	TC	GT	3037.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.194;ClippingRankSum=0.000;DP=304;ExcessHet=3.0103;FS=1.537;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.94;MQRankSum=-10.006;QD=10.06;ReadPosRankSum=-2.281;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:215,87:0.29:302
chr17	5036214	rs114647990	C	T	3456.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.852;ClippingRankSum=0.000;DB;DP=316;ExcessHet=3.0103;FS=0.944;MLEAC=1;MLEAF=0.500;MQ=58.98;MQRankSum=-9.864;QD=11.01;ReadPosRankSum=-1.841;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:222,92:0.29:314
chr17	5036224	rs72830922	C	G	3886.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.255;ClippingRankSum=0.000;DB;DP=373;ExcessHet=3.0103;FS=3.519;MLEAC=1;MLEAF=0.500;MQ=58.94;MQRankSum=-9.686;QD=10.48;ReadPosRankSum=-2.381;SOR=0.601;set=HC	GT:AD:AF:DP	0/1:245,126:0.34:371
chr17	5036274	rs78465432	C	A	5903.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.875;ClippingRankSum=0.000;DB;DP=414;ExcessHet=3.0103;FS=1.130;MLEAC=1;MLEAF=0.500;MQ=59.05;MQRankSum=-8.415;QD=14.29;ReadPosRankSum=1.657;SOR=0.802;set=HC	GT:AD:AF:DP	0/1:252,161:0.39:413
chr17	5036281	rs76236903	G	C	5914.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.792;ClippingRankSum=0.000;DB;DP=389;ExcessHet=3.0103;FS=2.181;MLEAC=1;MLEAF=0.500;MQ=59.00;MQRankSum=-7.877;QD=15.24;ReadPosRankSum=0.614;SOR=0.827;set=HC	GT:AD:AF:DP	0/1:229,159:0.41:388
chr17	5036329	rs72830923	A	G	1707.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:134,86:0.39:220
chr17	5036383	rs76207017	C	T	574.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:55,27:0.33:82
chr17	5039138	rs3213878	C	T	1200.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:11,52:0.83:63
chr17	5042241	rs28645497	G	A	305.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:20,13:0.39:33
chr17	5042346	rs11870506	C	A	734.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:111,45:0.29:156
chr17	5042422	rs4080179	G	A	687.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:98,41:0.29:139
chr17	5042715	rs61740308	G	A	744.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:19,33:0.63:52
chr17	5042837	rs61745111	C	T	1612.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:29,67:0.70:96
chr17	5042894	rs8073787	T	C	2680.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr17	5044640	.	T	TA	133.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.219;ClippingRankSum=0.000;DP=179;ExcessHet=3.0103;FS=4.398;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=2.294;QD=0.76;ReadPosRankSum=2.828;SOR=1.175;set=HC	GT:AD:AF:DP	0/1:137,38:0.22:175
chr17	5048207	rs2304447	A	G	3019.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:81,125:0.61:206
chr17	5051848	rs112209972	T	C	4964.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:121,212:0.64:333
chr17	5066305	rs2307138	A	T	2839.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:64,127:0.66:191
chr17	5084763	rs1689965	G	A	17199.77	.	AC=2;AF=1.00;AN=2;DB;DP=638;set=Intersection	GT:AD:AF:DP	1/1:0,629:1.00:629
chr17	5085857	rs1730488	C	T	4577.77	.	AC=1;AF=0.500;AN=2;DB;DP=796;set=Intersection	GT:AD:AF:DP	0/1:543,248:0.31:791
chr17	5124352	rs137985713	C	CA	205.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.936;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=0.000;QD=6.86;ReadPosRankSum=0.198;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:11,19:0.63:30
chr17	5126768	rs78015303	G	A	3889.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:73,167:0.70:240
chr17	5185664	rs11538946	T	C	2742.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr17	5211903	rs141363079	C	CAATT	382.73	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:14,11:0.44:25
chr17	5249998	rs11871517	G	A	539.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:14,24:0.63:38
chr17	5253674	.	C	CA	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.151;ClippingRankSum=0.000;DP=156;ExcessHet=3.0103;FS=4.537;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.37;ReadPosRankSum=2.248;SOR=0.338;set=HC	GT:AD:AF:DP	0/1:118,23:0.16:141
chr17	5268337	rs57839578	A	T	659.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr17	5268356	rs71151866	TA	T	246.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.057;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.93;MQRankSum=1.895;QD=5.74;ReadPosRankSum=-2.673;SOR=0.604;set=HC	GT:AD:AF:DP	0/1:20,23:0.53:43
chr17	5271763	rs61735455	G	C	2500.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:85,122:0.59:207
chr17	5280440	rs3026101	T	C	2061.77	.	AC=1;AF=0.500;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	0/1:266,123:0.32:389
chr17	5281758	rs3026105	G	A	242.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:19,11:0.37:30
chr17	5283617	rs11868032	A	T	830.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr17	5284480	rs3026109	T	C	1446.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr17	5284543	rs56804522	TAA	T	5232.73	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr17	5284698	rs1143206	A	G	7670.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr17	5284719	rs1065482	T	C	7439.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr17	5284770	rs1065483	G	A	6764.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr17	5289580	rs11209	A	G	9051.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	1/1:2,340:0.99:342
chr17	5289676	rs1806222	C	T	2701.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr17	5289865	rs67634045	CAT	C	3646.73	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr17	5290033	rs1071705	T	C	9741.77	.	AC=2;AF=1.00;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	1/1:0,365:1.00:365
chr17	5290681	rs739767	A	C	1905.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr17	5290703	rs739768	G	A	2516.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:2,93:0.98:95
chr17	5290824	rs748486	C	A	6101.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr17	5291276	rs142820374	AAAAT	A	2560.73	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr17	5294976	rs14231	T	A	5648.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr17	5295001	rs2285748	A	G	1081.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.180;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=1.237;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.22;ReadPosRankSum=-0.563;SOR=0.802;set=HC	GT:AD:AF:DP	0/1:112,62:0.36:174
chr17	5298320	rs1806240	C	T	3356.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr17	5298396	rs2309372	G	A	1014.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr17	5302778	rs12602074	T	C	1621.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr17	5308377	rs2301739	C	T	688.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:74,36:0.33:110
chr17	5308603	rs3026133	G	A	4674.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr17	5312271	rs929262	A	G	3119.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr17	5314263	rs1806255	G	C	1641.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr17	5317492	rs1806263	C	A	533.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:60,27:0.31:87
chr17	5319748	rs1806264	A	C	153.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:27,10:0.27:37
chr17	5320044	rs1806265	T	A	1552.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr17	5320082	rs35036161	C	CT	903.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr17	5323269	rs1058115	C	T	583.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:45,29:0.39:74
chr17	5323631	rs9908179	A	G	647.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:56,32:0.36:88
chr17	5324588	rs4444392	C	T	1068.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:231,87:0.27:318
chr17	5324836	rs9303192	C	T	162.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:32,11:0.26:43
chr17	5326089	rs1071648	C	T	507.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.898;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=1.919;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.19;ReadPosRankSum=0.768;SOR=0.895;set=HC	GT:AD:AF:DP	0/1:55,27:0.33:82
chr17	5326145	rs12761	C	G	738.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:65,23:0.26:88
chr17	5326162	rs2189336	G	A	774.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:66,24:0.27:90
chr17	5326178	rs2189337	C	T	751.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:62,23:0.27:85
chr17	5328633	rs8080400	G	A	489.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.171;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=0.692;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.10;ReadPosRankSum=0.354;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:120,38:0.24:158
chr17	5328659	.	C	CT	104.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.984;ClippingRankSum=0.000;DP=129;ExcessHet=3.0103;FS=0.924;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.00;ReadPosRankSum=-0.205;SOR=0.835;set=HC	GT:AD:AF:DP	0/1:83,22:0.21:105
chr17	5328661	rs8067738	T	C	56.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.195;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=1.879;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.47;ReadPosRankSum=2.326;SOR=0.919;set=HC	GT:AD:AF:DP	0/1:98,23:0.19:121
chr17	5328748	rs8067894	T	C	184.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:26,12:0.32:38
chr17	5334804	.	TA	T	48.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.294;ClippingRankSum=0.000;DP=95;ExcessHet=3.0103;FS=4.399;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.57;ReadPosRankSum=-1.031;SOR=0.247;set=HC	GT:AD:AF:DP	0/1:68,17:0.20:85
chr17	5334850	rs72634034	G	A	517.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.565;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=0.668;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.84;ReadPosRankSum=-2.838;SOR=0.821;set=HC	GT:AD:AF:DP	0/1:142,40:0.22:182
chr17	5334873	rs34134819	GA	G	1275.73	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:162,56:0.26:218
chr17	5335752	rs8072363	C	T	322.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:36,17:0.32:53
chr17	5336058	rs1050390	G	A	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.047;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.56;ReadPosRankSum=-1.700;SOR=0.241;set=HC	GT:AD:AF:DP	0/1:23,5:0.18:28
chr17	5336791	rs4790264	G	T	823.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.029;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=1.385;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.87;ReadPosRankSum=-2.317;SOR=0.529;set=HC	GT:AD:AF:DP	0/1:120,49:0.29:169
chr17	5337137	rs2285747	G	C	1629.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:171,90:0.34:261
chr17	5338093	rs59609565	AT	A	227.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.490;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=4.983;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.74;ReadPosRankSum=-0.184;SOR=1.321;set=HC	GT:AD:AF:DP	0/1:57,26:0.31:83
chr17	5338301	rs137972227	GAAAACAGACAAGGC	G	1627.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.181;ClippingRankSum=0.000;DB;DP=328;ExcessHet=3.0103;FS=9.552;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=5.492;QD=5.28;ReadPosRankSum=1.767;SOR=1.282;set=HC	GT:AD:AF:DP	0/1:249,59:0.19:308
chr17	5347576	rs2074438	G	A	3037.77	.	AC=1;AF=0.500;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	0/1:280,164:0.37:444
chr17	5354077	rs3744714	C	T	494.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:49,28:0.36:77
chr17	5418706	.	CT	C	730.73	.	AC=1;AF=0.500;AN=2;DP=41;set=Intersection	GT:AD:AF:DP	0/1:17,24:0.59:41
chr17	5421005	rs56750129	TC	AA	6586.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;JOINED;set=Intersection	GT:AD:AF:DP	1/1:1,150:0.99:151
chr17	5424129	rs12946467	C	G	1443.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr17	5424376	rs12944976	G	A	6608.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:7,258:0.97:265
chr17	5425077	rs11651270	T	C	1734.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr17	5436263	rs2301582	C	T	13580.77	.	AC=2;AF=1.00;AN=2;DB;DP=510;set=Intersection	GT:AD:AF:DP	1/1:1,505:1.00:506
chr17	5462240	rs61753142	C	T	1383.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:117,64:0.35:181
chr17	5485367	rs12150220	A	T	1726.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr17	5998691	rs41314095	C	G	1121.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:22,39:0.64:61
chr17	6014176	rs2302837	A	G	6441.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.18;SOR=1.031;set=HC	GT:AD:AF:DP	1/1:0,237:1.00:237
chr17	6330068	rs2292546	T	C	13693.77	.	AC=2;AF=1.00;AN=2;DB;DP=524;set=Intersection	GT:AD:AF:DP	1/1:0,520:1.00:520
chr17	6331803	rs8075035	T	C	9058.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr17	6331836	rs12453262	T	G	1877.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:152,93:0.38:245
chr17	6350727	rs12947546	C	T	3737.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr17	6352863	rs34107703	C	T	3055.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr17	6353679	rs7218283	A	C	6026.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr17	6364753	rs11654099	A	G	9284.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:2,354:0.99:356
chr17	6371738	rs35021251	A	G	4421.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr17	6373737	rs11654175	C	T	8900.77	.	AC=2;AF=1.00;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	1/1:2,351:0.99:353
chr17	6374779	rs9902425	T	C	1020.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:2,38:0.95:40
chr17	6377668	rs11078632	C	A	1970.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr17	6381939	rs938288	G	A	7312.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr17	6387482	rs11656015	G	C	5017.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr17	6406883	rs3809835	C	T	3444.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr17	6441164	rs165106	T	C	904.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr17	6441207	rs9907305	C	T	101.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.854;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=1.446;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.45;ReadPosRankSum=-0.425;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:58,12:0.17:70
chr17	6483046	rs3744720	T	C	2445.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:57,106:0.65:163
chr17	6493056	rs367918	T	C	775.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr17	6493198	rs1443417	T	C	1909.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:47,88:0.65:135
chr17	6493434	rs74547253	C	T	336.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:7,15:0.68:22
chr17	6493468	rs16955959	T	C	135.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:3,7:0.70:10
chr17	6502399	rs77498065	A	G	969.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:14,34:0.71:48
chr17	6511781	rs4796519	A	G	2794.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:59,119:0.67:178
chr17	6515387	rs2289642	A	G	14041.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.246;ClippingRankSum=0.000;DB;DP=605;ExcessHet=3.0103;FS=2.527;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.76;ReadPosRankSum=0.128;SOR=0.893;set=HC	GT:AD:AF:DP	0/1:231,360:0.61:591
chr17	6515392	rs79173884	T	G	13831.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.631;ClippingRankSum=0.000;DB;DP=589;ExcessHet=3.0103;FS=1.799;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.01;ReadPosRankSum=0.335;SOR=0.890;set=HC	GT:AD:AF:DP	0/1:226,350:0.61:576
chr17	6524358	rs8074991	G	A	285.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:2,12:0.86:14
chr17	6528235	.	CT	C	110.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.230;ClippingRankSum=0.000;DP=39;ExcessHet=3.0103;FS=4.030;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.91;ReadPosRankSum=0.226;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:31,7:0.18:38
chr17	6531552	rs16955985	A	C	2889.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:59,128:0.68:187
chr17	6531648	rs2072149	A	G	3967.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:81,176:0.68:257
chr17	6538355	rs2301873	G	A	773.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:85,43:0.34:128
chr17	6545702	rs9909640	C	T	348.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:32,19:0.37:51
chr17	6546167	rs78547240	G	A	698.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:12,32:0.73:44
chr17	6546259	rs2285999	T	C	1771.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr17	6553543	rs17842438	A	T	1599.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:49,72:0.60:121
chr17	6553583	rs2301874	G	A	727.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:50,35:0.41:85
chr17	6553901	rs56978514	A	G	759.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:8,28:0.78:36
chr17	6554616	rs17842439	C	G	412.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:4,16:0.80:20
chr17	6555546	rs56268735	C	CG	18276.73	.	AC=2;AF=1.00;AN=2;DB;DP=545;set=Intersection	GT:AD:AF:DP	1/1:0,517:1.00:517
chr17	6558645	rs8077691	G	A	275.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:5,11:0.69:16
chr17	6558768	rs8078913	C	T	942.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.329;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.54;ReadPosRankSum=-1.984;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:17,40:0.70:57
chr17	6562141	rs17842437	G	A	38.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=45.49;MQRankSum=-0.126;QD=7.75;ReadPosRankSum=1.036;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr17	6594014	rs218697	C	T	454.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:35,23:0.40:58
chr17	6596497	.	AAC	A	592.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.155;ClippingRankSum=0.000;DP=140;ExcessHet=3.0103;FS=2.884;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.548;QD=23.71;ReadPosRankSum=1.419;SOR=1.911;set=HC	GT:AD:AF:DP	1/1:2,23:0.92:25
chr17	6607389	rs218677	G	A	2694.77	.	AC=1;AF=0.500;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	0/1:263,149:0.36:412
chr17	6607435	rs218678	G	A	2684.77	.	AC=1;AF=0.500;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	0/1:262,150:0.36:412
chr17	6659324	rs3785793	A	G	861.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:25,42:0.63:67
chr17	6661584	rs4796550	T	C	883.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:16,38:0.70:54
chr17	6662948	.	GGT	G	246.73	.	AC=1;AF=0.500;AN=2;DP=30;set=Intersection	GT:AD:AF:DP	0/1:18,12:0.40:30
chr17	6663895	rs2271231	C	G	694.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:8,28:0.78:36
chr17	6684003	rs17731806	C	G	2035.77	.	AC=1;AF=0.500;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	0/1:256,118:0.32:374
chr17	6690557	rs60016604	A	G	559.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.991;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=3.475;MLEAC=1;MLEAF=0.500;MQ=60.65;MQRankSum=4.291;QD=4.55;ReadPosRankSum=-0.145;SOR=0.349;set=HC	GT:AD:AF:DP	0/1:97,26:0.21:123
chr17	6690572	.	T	TGTGTGTGCGC	1009.73	.	AC=1;AF=0.500;AN=2;DP=152;set=Intersection	GT:AD:AF:DP	0/1:118,31:0.21:149
chr17	6690829	rs4239266	G	A	639.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:60,33:0.35:93
chr17	6690858	.	C	CT	61.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.720;ClippingRankSum=0.000;DP=53;ExcessHet=3.0103;FS=5.863;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=0.000;QD=1.82;ReadPosRankSum=1.525;SOR=0.027;set=HC	GT:AD:AF:DP	0/1:24,10:0.29:34
chr17	6704121	rs2271233	C	T	3837.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:77,175:0.69:252
chr17	6716385	rs8081510	T	C	4765.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.54;SOR=1.419;set=HC	GT:AD:AF:DP	1/1:0,167:1.00:167
chr17	6899559	rs312467	C	G	1573.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.38;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr17	6899629	rs3218667	C	T	426.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr17	6900362	rs2070589	C	T	1455.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr17	6900383	rs312468	T	C	1328.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	6902179	rs312470	G	A	4690.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr17	6902743	rs1042356	G	A	5894.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr17	6902760	rs1126667	A	G	5072.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr17	6903537	rs2292353	G	A	1129.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr17	6905061	rs1042357	T	G	10701.77	.	AC=2;AF=1.00;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	1/1:0,398:1.00:398
chr17	6906085	rs11571338	C	CT	585.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr17	6909377	rs371982623	GC	G	1067.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.97;QD=42.71;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr17	6909379	.	C	T	1076.77	.	AC=2;AF=1.00;ALERT;AN=2;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.96;QD=43.07;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr17	6915401	rs2271316	C	G	1579.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr17	6919093	rs14309	T	C	5395.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.82;SOR=0.824;set=HC	GT:AD:AF:DP	1/1:0,209:1.00:209
chr17	6927350	rs312461	A	G	1827.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr17	6928019	rs146207245	C	CCAG	5159.73	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:26,207:0.89:233
chr17	6929924	rs379478	T	C	11082.77	.	AC=2;AF=1.00;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	1/1:0,394:1.00:394
chr17	6933217	rs421264	T	G	3224.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr17	6942108	rs11078663	C	T	8809.77	.	AC=1;AF=0.500;AN=2;DB;DP=588;set=Intersection	GT:AD:AF:DP	0/1:184,391:0.68:575
chr17	6942111	rs33979567	G	T	3312.77	.	AC=1;AF=0.500;AN=2;DB;DP=594;set=Intersection	GT:AD:AF:DP	0/1:398,183:0.31:581
chr17	6943266	rs4796576	G	A	1867.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:31,80:0.72:111
chr17	6979179	rs364569	A	G	8444.77	.	AC=1;AF=0.500;AN=2;DB;DP=572;set=Intersection	GT:AD:AF:DP	0/1:193,379:0.66:572
chr17	6979218	rs3830425	AATAGG	A	6019.73	.	AC=1;AF=0.500;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	0/1:148,247:0.63:395
chr17	6979626	.	CT	C	78.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;FS=6.690;MLEAC=1;MLEAF=0.500;MQ=59.76;MQRankSum=0.000;QD=4.14;ReadPosRankSum=0.057;SOR=2.891;set=HC	GT:AD:AF:DP	0/1:8,11:0.58:19
chr17	6981353	rs732828	G	C	10998.77	.	AC=1;AF=0.500;AN=2;DB;DP=755;set=Intersection	GT:AD:AF:DP	0/1:262,488:0.65:750
chr17	6981397	rs90951	A	G	6876.77	.	AC=1;AF=0.500;AN=2;DB;DP=487;set=Intersection	GT:AD:AF:DP	0/1:174,309:0.64:483
chr17	7011064	rs199979065	GCACACTACACACACCGCACACGTA	G	14039.73	.	AC=2;AF=1.00;AN=2;DB;DP=575;set=Intersection	GT:AD:AF:DP	1/1:2,528:1.00:530
chr17	7011144	rs62058755	G	A	19193.77	.	AC=2;AF=1.00;AN=2;DB;DP=729;set=Intersection	GT:AD:AF:DP	1/1:0,728:1.00:728
chr17	7080023	rs199747970	TCA	T	1579.73	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr17	7080069	rs12945299	A	G	2497.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr17	7080111	rs145025195	T	TCA	844.73	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:125,46:0.27:171
chr17	7080316	rs55714927	C	T	6429.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr17	7096707	rs3215125	TC	T	2045.73	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr17	7099811	rs17203281	G	A	16970.77	.	AC=2;AF=1.00;AN=2;DB;DP=637;set=Intersection	GT:AD:AF:DP	1/1:2,629:1.00:631
chr17	7111624	rs178471	T	C	1101.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr17	7121785	rs2521985	T	C	2886.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr17	7123240	rs139223575	T	TGGGCGTGCAGGACGC	7270.73	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr17	7124768	.	T	C	261	.	AC=2;AF=1.00;AN=2;BRF=0.26;FR=1.0000;HP=2;HapScore=2;MGOF=149;MMLQ=28;MQ=63.02;NF=10;NR=1;PP=261;QD=26.8882920497;SC=CTGCCCTAGGTCAGGAACTGC;SbPval=0.64;Source=Platypus;TC=11;TCF=10;TCR=1;TR=11;WE=7124776;WS=7124763;set=Platypus	GT:AD:AF:DP	1/1:0,11:1.00:11
chr17	7127718	rs17671352	T	C	8555.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr17	7129840	rs35594616	T	C	5112.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr17	7129974	rs2074222	A	G	1956.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.78;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr17	7132556	rs222837	C	T	9407.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr17	7133162	rs222836	G	A	5401.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr17	7133609	rs2074216	G	A	11573.77	.	AC=2;AF=1.00;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	1/1:1,411:1.00:412
chr17	7134129	rs222835	A	G	16622.77	.	AC=2;AF=1.00;AN=2;DB;DP=643;set=Intersection	GT:AD:AF:DP	1/1:0,630:1.00:630
chr17	7150552	rs2074217	A	G	5277.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr17	7154534	rs414206	G	A	16450.77	.	AC=2;AF=1.00;AN=2;DB;DP=638;set=Intersection	GT:AD:AF:DP	1/1:1,627:1.00:628
chr17	7156186	rs2074218	A	G	11291.77	.	AC=2;AF=1.00;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	1/1:0,408:1.00:408
chr17	7156447	rs2074219	A	G	1189.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr17	7158203	rs402514	T	G	15422.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=5.710;ClippingRankSum=0.000;DB;DP=608;ExcessHet=3.0103;FS=5.776;MLEAC=2;MLEAF=1.000;MQ=60.05;MQRankSum=-4.063;QD=25.75;ReadPosRankSum=0.367;SOR=0.057;set=HC	GT:AD:AF:DP	1/1:11,588:0.98:599
chr17	7158258	rs55999520	GT	G	1801.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.411;ClippingRankSum=0.000;DB;DP=250;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=1.007;QD=10.18;ReadPosRankSum=-0.192;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:38,139:0.79:177
chr17	7163739	rs4562	A	G	8113.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr17	7165395	rs56219105	CG	C	4831.73	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr17	7185092	rs5418	G	A	1052.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr17	7185788	rs222848	T	C	11770.77	.	AC=2;AF=1.00;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	1/1:0,442:1.00:442
chr17	7185861	rs222849	T	C	13004.77	.	AC=2;AF=1.00;AN=2;DB;DP=489;set=Intersection	GT:AD:AF:DP	1/1:1,488:1.00:489
chr17	7187123	rs5435	T	C	9170.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:0,344:1.00:344
chr17	7192091	rs222842	C	T	3682.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr17	7192198	rs222841	T	G	2631.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr17	7193055	rs3833134	GA	G	4599.73	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr17	7193060	rs55781423	A	G	4608.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr17	7193255	rs3744405	G	A	2759.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr17	7193448	rs222838	A	G	6042.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr17	7194010	rs2521992	C	T	1304.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr17	7197633	rs8069533	A	G	332.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr17	7197794	rs222859	C	A	629.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.22;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr17	7225425	rs2062771	T	C	3977.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr17	7286266	rs1554947	C	T	8145.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:2,301:0.99:303
chr17	7290787	rs5819155	TG	T	10109.73	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr17	7290821	rs968580	T	C	6751.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr17	7290922	rs35318852	AT	A	459.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.400;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=11.79;ReadPosRankSum=0.672;SOR=1.455;set=HC	GT:AD:AF:DP	1/1:4,35:0.90:39
chr17	7292107	rs6503018	G	A	7424.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr17	7293715	rs3744549	C	T	8415.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr17	7297452	rs4613118	A	G	3404.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr17	7306727	rs17882626	A	G	5763.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr17	7307074	rs71370494	G	C	3918.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.40;SOR=1.435;set=HC	GT:AD:AF:DP	1/1:0,143:1.00:143
chr17	7307103	.	A	ACC	828.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.210;ClippingRankSum=0.000;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.60;ReadPosRankSum=1.130;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:2,26:0.93:28
chr17	7307287	rs9900153	T	C	18610.77	.	AC=2;AF=1.00;AN=2;DB;DP=719;set=Intersection	GT:AD:AF:DP	1/1:0,696:1.00:696
chr17	7317647	rs60631713	A	AC	4435.73	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr17	7318396	rs2241233	C	T	8498.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chr17	7318559	rs6503019	G	A	1658.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr17	7318935	rs12947017	C	T	14004.77	.	AC=2;AF=1.00;AN=2;DB;DP=524;set=Intersection	GT:AD:AF:DP	1/1:0,518:1.00:518
chr17	7321067	rs62061175	C	T	210.78	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr17	7329632	rs13290	T	G	21658.77	.	AC=2;AF=1.00;AN=2;DB;DP=796;set=Intersection	GT:AD:AF:DP	1/1:2,784:1.00:786
chr17	7345819	rs4151129	A	AGGTAC	2983.73	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr17	7346302	rs3853818	T	C	7942.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr17	7348625	rs17856697	A	G	9892.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	1/1:0,361:1.00:361
chr17	7349622	.	T	TTGTGTGTG	78.86	.	AC=1;AF=0.500;AN=2;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=19.71;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:0,4:1.00:4
chr17	7350544	rs2302767	G	A	10113.77	.	AC=2;AF=1.00;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	1/1:0,375:1.00:375
chr17	7357607	rs76001008	C	T	1839.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:35,80:0.70:115
chr17	7358803	rs7214344	G	A	2993.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr17	7358861	rs2302762	T	C	1875.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr17	7358930	rs56074046	G	A	1329.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr17	7359357	.	T	G	912.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.769;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=2.947;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=-1.358;QD=16.30;ReadPosRankSum=-0.659;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:19,37:0.66:56
chr17	7359368	.	CTTTTTTTTTTTT	C	1606.73	.	AC=2;AF=1.00;AN=2;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.24;QD=36.52;SOR=2.546;set=HC	GT:AD:AF:DP	1/1:1,43:0.98:44
chr17	7385174	rs8065577	G	C	1735.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr17	7400041	rs9890920	C	T	6117.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr17	7400137	rs9898024	T	C	13301.77	.	AC=2;AF=1.00;AN=2;DB;DP=483;set=Intersection	GT:AD:AF:DP	1/1:0,479:1.00:479
chr17	7400815	rs2228128	T	C	2399.77	.	AC=1;AF=0.500;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	0/1:215,130:0.38:345
chr17	7401335	rs111845660	G	GGCTCTGGGGT	8434.73	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr17	7401572	rs41554719	A	T	844.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:97,48:0.33:145
chr17	7402556	rs2277638	G	A	13432.77	.	AC=2;AF=1.00;AN=2;DB;DP=499;set=Intersection	GT:AD:AF:DP	1/1:0,494:1.00:494
chr17	7402600	rs2228129	T	C	14255.77	.	AC=2;AF=1.00;AN=2;DB;DP=527;set=Intersection	GT:AD:AF:DP	1/1:1,522:1.00:523
chr17	7403942	rs12936464	A	C	2176.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr17	7404107	rs7217707	T	C	14957.77	.	AC=2;AF=1.00;AN=2;DB;DP=549;set=Intersection	GT:AD:AF:DP	1/1:0,548:1.00:548
chr17	7404209	rs6503030	G	A	8738.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr17	7404991	rs2228130	T	C	8265.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr17	7405074	rs8075218	C	T	5623.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr17	7406343	rs9890028	T	C	996.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr17	7411855	rs4796432	A	G	1673.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr17	7412212	rs9889368	A	G	4474.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr17	7412403	rs2228133	T	C	6903.77	.	AC=1;AF=0.500;AN=2;DB;DP=536;set=Intersection	GT:AD:AF:DP	0/1:206,326:0.61:532
chr17	7412965	rs71541942	T	TAGA	1118.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.750;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=5.722;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.62;ReadPosRankSum=0.672;SOR=1.083;set=HC	GT:AD:AF:DP	0/1:132,37:0.22:169
chr17	7413038	rs2269459	A	G	3206.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:2,82:0.98:84
chr17	7413057	rs7213878	C	T	2704.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr17	7413120	rs7218412	A	G	1249.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr17	7414958	rs2071502	G	C	1486.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr17	7416683	rs9894023	A	G	65599.77	.	AC=2;AF=1.00;AN=2;DB;DP=2565;set=Intersection	GT:AD:AF:DP	1/1:1,2510:1.00:2511
chr17	7417086	rs4344809	G	A	36355.77	.	AC=2;AF=1.00;AN=2;DB;DP=1358;set=Intersection	GT:AD:AF:DP	1/1:0,1341:1.00:1341
chr17	7417121	rs1058387	C	T	8245.77	.	AC=1;AF=0.500;AN=2;DB;DP=1497;set=Intersection	GT:AD:AF:DP	0/1:1004,472:0.32:1476
chr17	7417551	rs9533	T	C	6368.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr17	7452752	rs80067372	G	A	624.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:65,36:0.36:101
chr17	7452977	rs9899183	C	T	1318.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:37,63:0.63:100
chr17	7453505	rs62059804	C	A	1496.77	.	AC=1;AF=0.500;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	0/1:246,98:0.28:344
chr17	7460559	rs4968189	T	G	7446.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr17	7462969	rs3803800	A	G	1308.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:132,74:0.36:206
chr17	7468216	rs4968212	T	C	7915.77	.	AC=1;AF=0.500;AN=2;DB;DP=487;set=Intersection	GT:AD:AF:DP	0/1:146,339:0.70:485
chr17	7470285	rs58837213	CA	C	7504.73	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:2,281:0.99:283
chr17	7474277	rs4968213	C	T	1768.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr17	7474539	rs28625968	C	T	1421.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr17	7477938	rs1057086	G	C	1017.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr17	7478498	rs78553499	G	A	815.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:14,35:0.71:49
chr17	7483915	rs9896688	A	T	10923.77	.	AC=1;AF=0.500;AN=2;DB;DP=766;set=Intersection	GT:AD:AF:DP	0/1:276,486:0.64:762
chr17	7487108	rs2075230	A	G	1514.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:33,61:0.65:94
chr17	7492388	rs117372143	G	A	630.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:14,26:0.65:40
chr17	7554772	rs1642762	C	T	175.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.091;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=1.209;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.32;ReadPosRankSum=-0.877;SOR=0.940;set=HC	GT:AD:AF:DP	0/1:39,14:0.26:53
chr17	7557419	rs1642763	A	G	15296.77	.	AC=2;AF=1.00;AN=2;DB;DP=579;set=Intersection	GT:AD:AF:DP	1/1:0,565:1.00:565
chr17	7557834	rs1642764	C	T	752.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:86,41:0.32:127
chr17	7559037	rs55831773	C	T	6611.77	.	AC=1;AF=0.500;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	0/1:159,294:0.65:453
chr17	7569698	rs8073498	A	C	1126.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:115,66:0.36:181
chr17	7576443	.	CAAAA	C	70.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.660;ClippingRankSum=-0.000;DP=13;ExcessHet=3.0103;FS=3.041;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.44;ReadPosRankSum=1.113;SOR=2.215;set=HC	GT:AD:AF:DP	0/1:9,4:0.31:13
chr17	7577407	rs12951053	A	C	254.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:26,14:0.35:40
chr17	7577427	rs12947788	G	A	385.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:38,20:0.34:58
chr17	7578115	rs1625895	T	C	1184.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:125,63:0.34:188
chr17	7578645	rs2909430	C	T	665.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:36,35:0.49:71
chr17	7579643	rs146534833	CCCCCAGCCCTCCAGGT	C	1589.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.533;ClippingRankSum=0.000;DB;DP=418;ExcessHet=3.0103;FS=2.531;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=2.833;QD=4.31;ReadPosRankSum=2.778;SOR=0.564;set=HC	GT:AD:AF:DP	0/1:268,101:0.27:369
chr17	7580500	rs12944939	C	T	619.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:45,28:0.38:73
chr17	7646166	rs2642160	A	G	265.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:6,13:0.68:19
chr17	7660622	rs62062621	C	G	474.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:57,26:0.31:83
chr17	7660676	.	C	CA	199.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.083;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=3.163;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.89;ReadPosRankSum=0.459;SOR=0.092;set=HC	GT:AD:AF:DP	0/1:14,15:0.52:29
chr17	7664239	rs12185237	C	T	2137.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:62,97:0.61:159
chr17	7669520	rs112893916	C	T	1015.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.557;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=1.335;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.65;ReadPosRankSum=-1.201;SOR=0.519;set=HC	GT:AD:AF:DP	0/1:22,39:0.64:61
chr17	7674850	rs7212989	C	T	287.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:28,14:0.33:42
chr17	7677927	rs4791759	A	G	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.403;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.13;ReadPosRankSum=1.543;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:23,5:0.18:28
chr17	7680159	rs62059684	G	A	2420.77	.	AC=1;AF=0.500;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	0/1:270,138:0.34:408
chr17	7681412	rs7359662	C	G	2213.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:158,106:0.40:264
chr17	7690404	rs72840094	G	A	529.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:51,26:0.34:77
chr17	7691053	.	TAA	T	107.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.268;ClippingRankSum=0.000;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.67;ReadPosRankSum=-0.085;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:12,7:0.37:19
chr17	7700712	rs1565817	C	T	10995.77	.	AC=1;AF=0.500;AN=2;DB;DP=776;set=Intersection	GT:AD:AF:DP	0/1:268,499:0.65:767
chr17	7701204	rs8072174	A	G	455.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:33,21:0.39:54
chr17	7701806	rs2131810	C	T	423.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:54,21:0.28:75
chr17	7702126	rs138048200	GCACACCCCCACTGC	G	210.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.616;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.16;ReadPosRankSum=-0.805;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:16,7:0.30:23
chr17	7702357	rs12949280	C	T	3690.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr17	7705089	rs4791834	C	G	1951.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:28,72:0.72:100
chr17	7705344	rs8073196	G	C	1378.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:127,78:0.38:205
chr17	7705410	rs8073332	G	T	563.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:53,29:0.35:82
chr17	7707839	.	C	T	20	.	AC=1;AF=0.500;AN=2;BRF=0.5;FR=0.5000;HP=2;HapScore=2;MGOF=6;MMLQ=28;MQ=60.0;NF=0;NR=4;PP=20;QD=13.6928031368;SC=CCGGCTACTGCGTCAGGGAAC;SbPval=1.0;Source=Platypus;TC=20;TCF=3;TCR=17;TR=4;WE=7707847;WS=7707829;set=Platypus	GT:AD:AF:DP	0/1:16,4:0.20:20
chr17	7708096	rs9889268	G	A	979.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:19,41:0.68:60
chr17	7708163	rs367854692	CA	C	153.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.324;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=0.774;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.85;ReadPosRankSum=-1.243;SOR=0.537;set=HC	GT:AD:AF:DP	0/1:138,43:0.24:181
chr17	7721199	rs148024366	GC	G	5109.73	.	AC=1;AF=0.500;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	0/1:132,205:0.61:337
chr17	7721231	rs9916791	T	C	6067.77	.	AC=1;AF=0.500;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	0/1:175,265:0.60:440
chr17	7722365	rs7213894	C	T	4163.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr17	7726612	rs34255363	C	CA	336.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.169;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.95;ReadPosRankSum=0.184;SOR=0.446;set=HC	GT:AD:AF:DP	1/1:4,22:0.85:26
chr17	7726665	rs148049107	CAGAGAG	C,CAGAGAGAG	1978.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.889;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=1.366;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=23.01;ReadPosRankSum=-0.016;SOR=0.483;set=HC	GT:AD:AF:DP	1/2:12,36,38:0.42,0.44:86
chr17	7733555	rs7405476	A	G	3420.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr17	7733833	rs34121753	A	G	1476.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:163,77:0.32:240
chr17	7750177	.	T	TACC	1616.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.564;ClippingRankSum=0.000;DP=242;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=-1.251;QD=10.04;ReadPosRankSum=0.598;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:71,90:0.56:161
chr17	7750214	.	A	ACCACCG	2188.73	.	AC=1;AF=0.500;AN=2;DP=273;set=Intersection	GT:AD:AF:DP	0/1:176,81:0.32:257
chr17	7750847	rs2270517	T	C	7458.77	.	AC=1;AF=0.500;AN=2;DB;DP=550;set=Intersection	GT:AD:AF:DP	0/1:204,338:0.62:542
chr17	7754993	rs12939056	G	A	1190.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.505;ClippingRankSum=0.000;DB;DP=291;ExcessHet=3.0103;FS=3.958;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.12;ReadPosRankSum=-1.540;SOR=0.476;set=HC	GT:AD:AF:DP	0/1:219,70:0.24:289
chr17	7756030	rs34657739	CCA	C	4485.73	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:59,113:0.66:172
chr17	7761926	rs3744252	C	T	8396.77	.	AC=1;AF=0.500;AN=2;DB;DP=635;set=Intersection	GT:AD:AF:DP	0/1:251,381:0.60:632
chr17	7788409	rs201772788	C	G	1175.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr17	7797287	.	G	GGGGCCAAGGATCCAGAGACAGGGATCCGTGA	905.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.247;ClippingRankSum=0.000;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=41.17;ReadPosRankSum=-1.520;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:10,12:0.55:22
chr17	7811876	.	CA	C	30.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.259;ClippingRankSum=0.000;DP=254;ExcessHet=3.0103;FS=8.836;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.13;ReadPosRankSum=2.046;SOR=1.401;set=HC	GT:AD:AF:DP	0/1:196,42:0.18:238
chr17	7811998	rs4239111	T	C	7934.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr17	7813638	rs146930588	C	A	3811.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:91,166:0.65:257
chr17	7828275	rs4444395	A	G	242.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:33,14:0.30:47
chr17	7828558	rs10852894	G	T	317.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:38,18:0.32:56
chr17	7828870	rs4396585	G	A	420.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:40,22:0.35:62
chr17	7830610	rs9908139	G	A	883.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:45,41:0.48:86
chr17	7830901	rs146866427	C	A	5369.77	.	AC=1;AF=0.500;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	0/1:94,237:0.72:331
chr17	7832766	rs9898955	A	G	1311.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.857;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.50;ReadPosRankSum=-0.967;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:113,62:0.35:175
chr17	7840679	rs4791987	G	A	506.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:35,26:0.43:61
chr17	7843053	rs11078719	C	T	1550.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:118,84:0.42:202
chr17	7846684	rs7207022	G	A	845.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:92,50:0.35:142
chr17	7847955	rs11650083	C	A	429.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:54,25:0.32:79
chr17	7849087	rs4462665	C	G	1131.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:151,68:0.31:219
chr17	7852528	rs7211792	C	T	800.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:58,38:0.40:96
chr17	7852887	rs7217194	T	G	875.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:73,41:0.36:114
chr17	7907189	rs3829789	C	T	1989.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:194,108:0.36:302
chr17	7915920	rs56130505	G	A	915.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:116,51:0.31:167
chr17	7917279	rs8069344	T	A	2110.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.267;ClippingRankSum=0.000;DB;DP=460;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.64;ReadPosRankSum=1.345;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:324,131:0.29:455
chr17	7918119	rs12103471	G	T	315.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.940;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=2.599;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.19;ReadPosRankSum=2.150;SOR=1.144;set=HC	GT:AD:AF:DP	0/1:76,23:0.23:99
chr17	7918146	rs72841482	C	T	527.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:101,35:0.26:136
chr17	7919931	rs12103519	T	C	1937.77	.	AC=1;AF=0.500;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	0/1:234,107:0.31:341
chr17	7946297	rs59352280	T	G	1018.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.552;ClippingRankSum=0.000;DB;DP=200;ExcessHet=3.0103;FS=3.532;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.15;ReadPosRankSum=-1.713;SOR=0.983;set=HC	GT:AD:AF:DP	0/1:136,62:0.31:198
chr17	7948175	rs6503070	C	T	6837.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr17	7950377	rs11541083	C	T	3222.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:56,140:0.71:196
chr17	7950952	rs9898751	C	A	2830.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:57,127:0.69:184
chr17	7951819	rs4792147	A	G	8194.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr17	7960380	rs8072641	T	C	1753.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:2,63:0.97:65
chr17	7960625	rs9896256	C	T	5832.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:1,213:1.00:214
chr17	7961129	rs7214975	G	A	480.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:13,18:0.58:31
chr17	7961138	rs8071924	G	T	182.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:15,9:0.38:24
chr17	7977105	rs12937410	A	G	5430.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr17	7979463	rs2289586	A	G	16890.77	.	AC=2;AF=1.00;AN=2;DB;DP=621;set=Intersection	GT:AD:AF:DP	1/1:0,614:1.00:614
chr17	7983799	rs2304907	A	G	3824.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:77,166:0.68:243
chr17	7983969	rs2304908	G	C	1769.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:24,64:0.73:88
chr17	7984157	rs3816263	A	C	1446.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:154,80:0.34:234
chr17	7990577	rs7504003	G	C	1723.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.244;ClippingRankSum=0.000;DB;DP=272;ExcessHet=3.0103;FS=7.074;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.59;ReadPosRankSum=4.460;SOR=1.410;set=HC	GT:AD:AF:DP	0/1:161,66:0.29:227
chr17	7991330	rs9909784	T	G	1089.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.849;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=10.107;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.58;ReadPosRankSum=1.029;SOR=4.505;set=HC	GT:AD:AF:DP	1/1:1,40:0.98:41
chr17	7999957	rs3809881	G	A	4364.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr17	8007650	rs2289587	T	C	1402.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr17	8007683	rs2289588	C	T	835.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr17	8025154	.	G	C	702.77	.	AC=1;AF=0.500;AN=2;DP=46;set=Intersection	GT:AD:AF:DP	0/1:13,30:0.70:43
chr17	8027593	rs3027279	G	T	3177.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr17	8045028	rs59587156	CT	C	2526.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.31;QD=42.11;SOR=4.875;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr17	8045060	.	CT	C	2972	.	AC=1;AF=0.500;AN=2;BRF=0.5;FR=0.5000;HP=8;HapScore=1;MGOF=14;MMLQ=24;MQ=58.75;NF=72;NR=67;PP=2972;QD=20;SC=GAGCTCAATTCTTTTTTCTCC;SbPval=0.59;Source=Platypus;TC=153;TCF=78;TCR=75;TR=139;WE=8045068;WS=8045050;set=Platypus	GT:AD:AF:DP	1/0:14,139:0.91:153
chr17	8045061	.	T	TTTTTTCTCCCCCTTGAACTTGAGCTCAATTC	7445.73	.	AC=2;AF=1.00;AN=2;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.71;QD=51.00;SOR=1.675;set=HC	GT:AD:AF:DP	1/1:0,146:1.00:146
chr17	8046772	rs2585405	C	G	4501.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr17	8048169	rs2253820	T	C	5125.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr17	8048283	rs2735611	G	A	1996.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr17	8050737	rs885747	G	C	8965.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:0,338:1.00:338
chr17	8052525	rs147233293	CAAAAACA	C	2045.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.176;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=2.430;MLEAC=2;MLEAF=1.000;MQ=63.33;MQRankSum=1.476;QD=18.94;ReadPosRankSum=1.516;SOR=0.231;set=HC	GT:AD:AF:DP	1/1:4,104:0.96:108
chr17	8064083	rs1061032	T	G	1427.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.96;SOR=1.371;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr17	8066107	rs2304909	G	A	480.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.30;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr17	8076778	rs9894790	C	T	2322.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr17	8076802	rs9901637	T	A	3135.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr17	8076911	rs11655582	A	G	9487.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.13;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,215:1.00:215
chr17	8076916	rs11650713	C	T	9463.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.02;SOR=0.702;set=HC	GT:AD:AF:DP	1/1:0,215:1.00:215
chr17	8077047	rs11657574	T	A	443.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:31,23:0.43:54
chr17	8079029	rs8064449	G	C	13677.77	.	AC=2;AF=1.00;AN=2;DB;DP=503;set=Intersection	GT:AD:AF:DP	1/1:0,491:1.00:491
chr17	8092694	rs8531	T	G	9805.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chr17	8108331	rs1059476	A	G	12507.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.15;SOR=0.977;set=HC	GT:AD:AF:DP	1/1:0,277:1.00:277
chr17	8108339	rs2241909	G	A	12565.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.09;SOR=1.004;set=HC	GT:AD:AF:DP	1/1:0,285:1.00:285
chr17	8110764	rs2289590	C	A	2566.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr17	8132763	rs3826543	T	C	3115.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr17	8135061	rs3027238	T	C	8426.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,319:1.00:319
chr17	8137737	rs4792621	G	A	3562.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr17	8139327	rs4791626	A	G	14166.77	.	AC=2;AF=1.00;AN=2;DB;DP=512;set=Intersection	GT:AD:AF:DP	1/1:0,506:1.00:506
chr17	8141707	rs6503093	T	C	7273.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr17	8157310	rs9891699	C	T	15395.77	.	AC=2;AF=1.00;AN=2;DB;DP=573;set=Intersection	GT:AD:AF:DP	1/1:0,564:1.00:564
chr17	8158273	rs6503094	A	G	5036.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr17	8159232	rs7221716	A	G	2840.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:1,105:0.99:106
chr17	8161149	rs4791641	C	T	3457.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr17	8166378	rs7206953	T	C	6426.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr17	8167600	rs11078738	T	C	8499.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr17	8168224	rs9902252	T	C	2610.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr17	8168805	rs9897842	A	G	8073.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr17	8169006	rs11655563	T	C	5762.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr17	8193473	rs11245	G	A	242.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr17	8194318	rs72835272	GT	AC	9032.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr17	8275001	rs2909439	C	T	208.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr17	8275023	rs1004151	T	G	70.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr17	8283379	rs409445	C	G	2481.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr17	8296383	rs12601362	C	T	2952.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr17	8296440	rs12601265	G	A	2690.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr17	8339103	rs8065181	C	T	467.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.39;SOR=2.531;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr17	8339307	rs8064417	G	A	2914.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr17	8349984	rs369297844	T	TC	623.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr17	8363624	rs3817003	G	A	1228.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr17	8383253	rs4791316	G	C	1008.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr17	8383821	rs150332952	G	T	1577.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:137,82:0.37:219
chr17	8383894	rs6503120	A	G	5039.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr17	8384875	rs904417	T	G	1081.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr17	8387438	rs113838551	G	GATGA	6846.73	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr17	8390733	rs3826463	A	G	2425.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr17	8395894	rs904416	T	C	6456.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr17	8395949	.	CT	C	108.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.602;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=3.274;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=1.086;QD=2.53;ReadPosRankSum=-0.050;SOR=1.501;set=HC	GT:AD:AF:DP	0/1:26,17:0.40:43
chr17	8411812	rs11658073	C	T	1547.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr17	8412133	rs9889907	A	G	1988.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr17	8413233	rs141845979	G	A	2285.77	.	AC=1;AF=0.500;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	0/1:223,130:0.37:353
chr17	8413314	rs36135285	CCA	C	8374.73	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr17	8413358	rs145464629	A	ATT,ATTT	2784.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.88;QD=34.38;SOR=2.041;set=HC	GT:AD:AF:DP	1/2:3,44,34:0.54,0.42:81
chr17	8413380	rs11650834	G	A	3081.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr17	8416098	rs71359697	C	T	956.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr17	8417006	rs34684979	G	GT	682.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.505;ClippingRankSum=0.000;DB;DP=406;ExcessHet=3.0103;FS=3.033;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=1.848;QD=1.93;ReadPosRankSum=-0.926;SOR=0.911;set=HC	GT:AD:AF:DP	0/1:265,88:0.25:353
chr17	8424270	rs8067456	G	A	8470.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr17	8449716	rs35537538	TA	T	695.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.270;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.48;MQRankSum=0.931;QD=11.41;ReadPosRankSum=0.066;SOR=0.844;set=HC	GT:AD:AF:DP	0/1:13,48:0.79:61
chr17	8449767	rs4791724	A	G	5552.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr17	8451744	rs57472344	GA	G	1599.73	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:2,80:0.98:82
chr17	8478605	rs268460	C	T	1771.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr17	8479841	rs1431307	A	C	3054.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.37;SOR=1.925;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr17	8647181	rs9902109	T	C	738.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:17,28:0.62:45
chr17	8647337	rs7218546	A	G	1972.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:56,105:0.65:161
chr17	8700982	rs2242373	C	T	18306.77	.	AC=2;AF=1.00;AN=2;DB;DP=689;set=Intersection	GT:AD:AF:DP	1/1:0,671:1.00:671
chr17	8701423	rs34184531	A	G	5383.77	.	AC=1;AF=0.500;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	0/1:138,226:0.62:364
chr17	8725214	rs56322041	A	AG	14186.73	.	AC=2;AF=1.00;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	1/1:0,411:1.00:411
chr17	8726160	rs2074258	A	G	881.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:11,32:0.74:43
chr17	8732926	rs62067965	C	G	4268.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:101,180:0.64:281
chr17	8784149	rs4791764	T	C	3060.77	.	AC=1;AF=0.500;AN=2;DB;DP=494;set=Intersection	GT:AD:AF:DP	0/1:325,166:0.34:491
chr17	8784361	rs4791765	A	G	1065.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:97,49:0.34:146
chr17	8784900	rs376963225	C	CAGTA	2812.73	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:150,75:0.33:225
chr17	8785087	rs9903447	A	C	12179.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.287;ClippingRankSum=0.000;DB;DP=1311;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.33;ReadPosRankSum=0.899;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:941,364:0.28:1305
chr17	8785092	rs9902600	C	T	12163.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.560;ClippingRankSum=0.000;DB;DP=1333;ExcessHet=3.0103;FS=1.244;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.17;ReadPosRankSum=1.432;SOR=0.778;set=HC	GT:AD:AF:DP	0/1:962,365:0.28:1327
chr17	8787847	rs436193	G	C	688.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:12,27:0.69:39
chr17	8787955	rs436384	T	C	2606.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:76,112:0.60:188
chr17	8788154	rs454347	C	A	5294.77	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:101,231:0.70:332
chr17	8790074	rs11078770	G	A	305.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:23,14:0.38:37
chr17	8791075	rs449373	T	C	1114.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:30,52:0.63:82
chr17	8792003	rs9915880	C	T	1973.77	.	AC=1;AF=0.500;AN=2;DB;DP=355;MQ=60.03;set=Intersection	GT:AD:AF:DP	0/1:241,112:0.32:353
chr17	8792029	rs381309	A	G	10391.77	.	AC=2;AF=1.00;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	1/1:2,370:0.99:372
chr17	8792093	rs16957702	G	A	2609.77	.	AC=1;AF=0.500;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	0/1:235,136:0.37:371
chr17	8792171	rs11650737	T	C	1855.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:194,97:0.33:291
chr17	8792326	rs11654380	C	T	170.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:32,10:0.24:42
chr17	8792371	rs11654094	G	A	202.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:23,10:0.30:33
chr17	8792514	rs394811	G	A	5100.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:2,200:0.99:202
chr17	8793905	rs365024	T	C	723.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr17	8794002	rs364676	T	C	1994.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:2,77:0.97:79
chr17	8794014	rs381198	A	G	2227.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:2,86:0.98:88
chr17	8809075	rs92535	G	A	1336.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:26,58:0.69:84
chr17	8809148	.	CT	C	66.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.118;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=1.144;QD=3.18;ReadPosRankSum=-0.986;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:11,10:0.48:21
chr17	8812683	rs181534	T	C	644.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr17	9066001	rs2072321	C	T	242.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:33,13:0.28:46
chr17	9066098	rs2286510	C	T	1278.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:141,71:0.33:212
chr17	9066191	rs375467976	G	A	2041.77	.	AC=1;AF=0.500;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	0/1:200,114:0.36:314
chr17	9083081	rs9907119	C	T	1595.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:121,75:0.38:196
chr17	9083377	rs9906162	G	T	506.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.737;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=0.690;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.82;ReadPosRankSum=1.820;SOR=0.592;set=HC	GT:AD:AF:DP	0/1:139,41:0.23:180
chr17	9083395	rs9906347	G	A	554.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.940;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.11;ReadPosRankSum=-1.768;SOR=0.603;set=HC	GT:AD:AF:DP	0/1:100,35:0.26:135
chr17	9086228	rs2302196	C	A	3221.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.222;ClippingRankSum=0.000;DB;DP=764;ExcessHet=3.0103;FS=0.594;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.24;ReadPosRankSum=-0.973;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:553,206:0.27:759
chr17	9086293	rs2302197	G	C	2280.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.244;ClippingRankSum=0.000;DB;DP=495;ExcessHet=3.0103;FS=1.965;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.65;ReadPosRankSum=-2.166;SOR=0.570;set=HC	GT:AD:AF:DP	0/1:346,145:0.30:491
chr17	9086561	rs16957995	C	A	444.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:78,31:0.28:109
chr17	9086676	rs16957998	T	G	430.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:53,22:0.29:75
chr17	9086708	rs62068199	T	C	289.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:49,20:0.29:69
chr17	9086743	rs62068200	C	T	166.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:39,12:0.24:51
chr17	9153861	rs8974	G	C	5607.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr17	9154078	rs17743659	G	C	3206.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr17	9154118	rs17675967	C	T	1772.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr17	9395033	rs6503214	A	G	1117.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.708;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.81;ReadPosRankSum=1.314;SOR=1.132;set=HC	GT:AD:AF:DP	1/1:2,47:0.96:49
chr17	9395231	rs9893664	G	A	1572.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr17	9408594	rs2249929	A	C	1540.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr17	9408609	rs2125348	A	G	1050.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr17	9471711	rs1133295	T	G	943.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:25,47:0.65:72
chr17	9479048	rs7210038	T	C	2837.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:70,127:0.64:197
chr17	9479098	rs7224817	C	A	3774.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:102,181:0.64:283
chr17	9479364	rs6503230	T	C	846.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:24,32:0.57:56
chr17	9515777	rs6503235	G	A	9106.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:0,340:1.00:340
chr17	9586165	rs12453943	C	T	4874.77	.	AC=1;AF=0.500;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	0/1:94,222:0.70:316
chr17	9632427	rs367655692	AT	A	81.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.331;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=2.695;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=1.442;QD=2.15;ReadPosRankSum=-1.940;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:25,13:0.34:38
chr17	9674901	rs114469918	C	T	2224.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:198,128:0.39:326
chr17	9674922	rs11654889	A	G	2050.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:168,108:0.39:276
chr17	9674976	rs11655932	T	C	989.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:99,51:0.34:150
chr17	9676012	rs72822108	C	T	426.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:21,19:0.47:40
chr17	9712092	rs56256681	G	A	2414.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr17	9712255	rs9908677	G	A	10065.77	.	AC=2;AF=1.00;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	1/1:2,379:0.99:381
chr17	9714009	rs4079466	C	A	3442.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr17	9725091	rs28590474	G	A	12244.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.977;ClippingRankSum=0.000;DB;DP=806;ExcessHet=3.0103;FS=0.531;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.23;ReadPosRankSum=1.465;SOR=0.607;set=HC	GT:AD:AF:DP	0/1:477,327:0.41:804
chr17	9725091	.	GGC	AGT	2944	.	AC=1;AF=0.500;AN=2;BRF=0.49;FR=0.5000;HP=1;HapScore=1;MGOF=1;MMLQ=23;MQ=60.0;NF=109;NR=95;PP=2944;QD=20;SC=TCACCGTTGAGGCTCTCCTCG;SbPval=0.41;Source=Platypus;TC=524;TCF=294;TCR=230;TR=204;WE=9725101;WS=9725081;set=Platypus	GT:AD:AF:DP	1/0:320,204:0.39:524
chr17	9725093	rs28376468	C	T	12244.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.997;ClippingRankSum=0.000;DB;DP=823;ExcessHet=3.0103;FS=1.123;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.91;ReadPosRankSum=1.511;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:489,332:0.40:821
chr17	9725279	rs9915294	C	T	2356.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:189,117:0.38:306
chr17	9764531	rs2001486	A	G	351.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:110,29:0.21:139
chr17	9764547	rs12150176	C	T	379.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:103,29:0.22:132
chr17	9764613	rs2280493	A	G	1376.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:20,60:0.75:80
chr17	9765514	rs12150273	G	C	455.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:40,20:0.33:60
chr17	9768941	rs756224	A	G	592.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.620;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.98;ReadPosRankSum=-1.288;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:89,30:0.25:119
chr17	9774057	rs17810279	T	G	936.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:130,57:0.30:187
chr17	9783566	rs4791903	G	C	580.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:78,31:0.28:109
chr17	9783855	rs2277690	A	G	714.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.864;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=0.754;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.80;ReadPosRankSum=-0.940;SOR=0.844;set=HC	GT:AD:AF:DP	0/1:109,40:0.27:149
chr17	9791375	rs17676067	T	C	550.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:43,30:0.41:73
chr17	9792768	rs17681684	G	A	1998.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.057;ClippingRankSum=0.000;DB;DP=414;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.95;ReadPosRankSum=0.470;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:283,121:0.30:404
chr17	9792872	rs17681708	T	C	1732.77	.	AC=1;AF=0.500;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	0/1:230,99:0.30:329
chr17	9793240	rs17681738	C	T	587.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:61,29:0.32:90
chr17	9793417	rs55789050	A	T	1430.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:212,85:0.29:297
chr17	9801316	.	T	TGTGTGTGC	508.73	.	AC=1;AF=0.500;AN=2;DP=66;set=Intersection	GT:AD:AF:DP	0/1:45,20:0.31:65
chr17	9801351	rs17744264	A	G	1041.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.642;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=5.383;MLEAC=1;MLEAF=0.500;MQ=60.71;MQRankSum=5.394;QD=7.83;ReadPosRankSum=0.047;SOR=1.248;set=HC	GT:AD:AF:DP	0/1:100,33:0.25:133
chr17	9801370	rs16958933	A	G	1096.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.487;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=2.375;MLEAC=1;MLEAF=0.500;MQ=60.54;MQRankSum=5.627;QD=6.30;ReadPosRankSum=0.244;SOR=0.929;set=HC	GT:AD:AF:DP	0/1:134,40:0.23:174
chr17	9801532	rs76286617	G	C	1618.77	.	AC=1;AF=0.500;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	0/1:248,103:0.29:351
chr17	9801635	rs62064489	A	G	503.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:68,27:0.28:95
chr17	9804493	rs6503264	C	T	549.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:18,22:0.55:40
chr17	9808571	rs2286531	T	G	2170.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:38,92:0.71:130
chr17	9820695	rs4791910	C	T	2352.77	.	AC=1;AF=0.500;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	0/1:260,129:0.33:389
chr17	9820739	rs11078821	A	G	1581.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:176,86:0.33:262
chr17	9821249	rs11078822	C	T	1508.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr17	9821614	rs61532416	G	GA	3887.73	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr17	9821618	rs55976773	T	G	3896.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr17	9923330	rs371905635	C	T	1622.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:160,91:0.36:251
chr17	10205067	rs2008528	C	T	7384.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr17	10214628	rs2074867	C	T	1268.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.951;ClippingRankSum=0.000;DB;DP=263;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.92;ReadPosRankSum=-3.155;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:184,74:0.29:258
chr17	10216442	rs4239113	C	A	1360.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:190,83:0.30:273
chr17	10216510	rs4791401	G	A	1685.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:191,93:0.33:284
chr17	10219366	rs2240577	C	T	1455.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:191,81:0.30:272
chr17	10219470	rs2240578	A	T	554.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:41,26:0.39:67
chr17	10222061	rs2074872	G	A	494.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.657;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.54;ReadPosRankSum=0.665;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:78,31:0.28:109
chr17	10227708	rs3826442	C	T	314.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:49,17:0.26:66
chr17	10231417	rs2277644	C	T	2422.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:103,108:0.51:211
chr17	10231498	rs2277645	A	C	1934.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr17	10235360	rs8064714	G	C	773.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr17	10236199	rs11654733	A	C	481.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:11,17:0.61:28
chr17	10236465	rs2240579	G	A	617.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:119,43:0.27:162
chr17	10243589	rs4445936	C	A	8295.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:1,312:1.00:313
chr17	10243717	rs3760423	G	A	2627.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr17	10247199	rs12938754	G	A	9325.77	.	AC=1;AF=0.500;AN=2;DB;DP=643;set=Intersection	GT:AD:AF:DP	0/1:216,421:0.66:637
chr17	10247544	rs12453187	C	T	623.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:37,29:0.44:66
chr17	10249888	rs34168540	G	GA	4119.73	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr17	10254197	rs2108568	A	G	3577.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr17	10258153	rs3214260	GT	G	5512.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:4,198:0.98:202
chr17	10258155	rs5010940	T	C	4566.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:5,190:0.97:195
chr17	10296486	rs33969260	G	A	4679.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:112,212:0.65:324
chr17	10297658	rs8069834	A	G	4885.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr17	10303144	rs3815314	G	C	287.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr17	10304261	rs3744552	G	A	2855.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:1,99:0.99:100
chr17	10318636	rs8068729	A	G	2573.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:44,116:0.72:160
chr17	10348806	rs35747402	G	A	538.80	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:2,20:0.91:22
chr17	10356736	rs71360263	C	T	1204.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:33,51:0.61:84
chr17	10357281	rs3826444	T	G	1203.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:27,48:0.64:75
chr17	10400963	rs723903	C	G	2924.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:67,133:0.67:200
chr17	10404046	rs17811250	G	A	3410.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:61,154:0.72:215
chr17	10411322	.	G	GT	290.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.003;ClippingRankSum=0.000;DP=246;ExcessHet=3.0103;FS=9.421;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=0.000;QD=1.52;ReadPosRankSum=1.214;SOR=0.349;set=HC	GT:AD:AF:DP	0/1:146,45:0.24:191
chr17	10415840	rs2007027	A	G	5952.77	.	AC=1;AF=0.500;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	0/1:109,258:0.70:367
chr17	10426343	rs7223755	C	T	489.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:5,19:0.79:24
chr17	10435325	rs11379780	G	GA	873.73	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:14,42:0.75:56
chr17	10448866	.	T	G	744.77	.	AC=1;AF=0.500;AN=2;DP=101;set=Intersection	GT:AD:AF:DP	0/1:55,39:0.41:94
chr17	10532884	rs12940161	G	A	707.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:17,30:0.64:47
chr17	10533595	rs3216886	C	CT	4798.73	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:62,147:0.70:209
chr17	10535100	rs73976871	C	A	2498.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:176,126:0.42:302
chr17	10536018	rs2285479	G	A	4340.77	.	AC=1;AF=0.500;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	0/1:148,192:0.56:340
chr17	10536184	rs2285478	A	G	1196.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:31,48:0.61:79
chr17	10537142	rs78946532	C	T	1470.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:34,59:0.63:93
chr17	10541515	rs2285477	C	T	6536.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr17	10542471	rs2285475	T	G	5110.77	.	AC=1;AF=0.500;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	0/1:130,229:0.64:359
chr17	10542765	rs2285474	A	G	1247.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:27,50:0.65:77
chr17	10542803	rs2285473	T	C	1029.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:22,40:0.65:62
chr17	10542886	rs2285472	T	C	821.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:25,37:0.60:62
chr17	10543183	rs2285471	A	G	952.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:15,38:0.72:53
chr17	10543218	rs2285470	A	G	714.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:17,29:0.63:46
chr17	10543253	rs60940173	C	T	260.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:30,14:0.32:44
chr17	10543281	rs138188093	TAA	T	684.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.080;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=1.363;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.70;ReadPosRankSum=0.318;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:30,34:0.53:64
chr17	10543385	rs56163389	T	C	981.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:92,49:0.35:141
chr17	10543463	rs2285469	T	C	3852.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:86,163:0.65:249
chr17	10544018	rs876660	T	C	1517.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:19,68:0.78:87
chr17	10544416	rs876657	G	T	498.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:17,19:0.53:36
chr17	10544461	rs56259391	G	A	773.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:57,37:0.39:94
chr17	10544696	rs3216884	GA	G,GAA	1771.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.172;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=3.829;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=16.25;ReadPosRankSum=-0.870;SOR=0.267;set=HC	GT:AD:AF:DP	1/2:6,64,39:0.59,0.36:109
chr17	10545432	rs3216883	C	CAGTA	268.73	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:10,7:0.41:17
chr17	10546130	rs2285468	T	G	11693.77	.	AC=2;AF=1.00;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	1/1:0,420:1.00:420
chr17	10549184	rs2239933	G	A	5682.77	.	AC=1;AF=0.500;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	0/1:118,257:0.69:375
chr17	10550845	rs142213434	TTTTTG	T	1603.73	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr17	10553046	rs1989810	A	G	3955.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr17	10555028	rs2285466	G	A	3143.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.155;ClippingRankSum=0.000;DB;DP=198;ExcessHet=3.0103;FS=2.091;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.20;ReadPosRankSum=0.274;SOR=0.910;set=HC	GT:AD:AF:DP	0/1:49,145:0.75:194
chr17	10555049	rs138453847	TTTA	T	52.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.474;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=1.536;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.05;ReadPosRankSum=1.080;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:40,10:0.20:50
chr17	10555061	rs71360285	A	G	397.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.466;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=6.493;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.96;ReadPosRankSum=1.564;SOR=1.732;set=HC	GT:AD:AF:DP	0/1:26,24:0.48:50
chr17	10555062	rs150760312	TTG	T	41.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.872;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=1.376;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.83;ReadPosRankSum=2.357;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:37,13:0.26:50
chr17	10555926	.	CTTTTTTTTTTTTTTTT	C	660.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.431;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=12.555;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.65;ReadPosRankSum=3.226;SOR=2.800;set=HC	GT:AD:AF:DP	0/1:11,21:0.66:32
chr17	10595388	rs2520178	A	G	5794.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr17	10614051	rs3215180	AT	A	477.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:14,29:0.67:43
chr17	10614174	rs199523732	G	A	3011.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:101,134:0.57:235
chr17	10614442	rs406446	A	G	2579.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:55,109:0.66:164
chr17	10618665	rs10676707	A	AAACT	295.73	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:15,9:0.38:24
chr17	10618792	rs116497896	G	C	1294.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:51,63:0.55:114
chr17	10632174	rs453318	A	G	482.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:12,19:0.61:31
chr17	10632499	rs421541	G	A	1439.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:20,58:0.74:78
chr17	10632535	rs378707	C	T	1053.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:12,40:0.77:52
chr17	10633181	rs3826448	A	G	1296.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:25,61:0.71:86
chr17	10633245	rs202312	T	C	2577.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr17	10633320	rs57860819	G	GT	641.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.164;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=3.206;MLEAC=1;MLEAF=0.500;MQ=65.06;MQRankSum=3.784;QD=16.45;ReadPosRankSum=-0.969;SOR=1.371;set=HC	GT:AD:AF:DP	0/1:11,28:0.72:39
chr17	10633321	.	CC	TC	767	.	AC=1;AF=0.500;AN=2;BRF=0.39;FR=1.0000,0.5000;HP=2;HapScore=2;MGOF=31;MMLQ=24;MQ=66.95;NF=2,3;NR=16,12;PP=767,273;QD=46.158097804;SC=CGTCGCTCCGCCCGGGGGCGG;SbPval=0.6;Source=Platypus;TC=18;TCF=2;TCR=16;TR=18,15;WE=10633329;WS=10633311;set=Platypus	GT:AD:AF:DP	0/1:7,15:0.68:22
chr17	10633321	.	CC	CGC	767	.	AC=1;AF=0.500;AN=2;BRF=0.39;FR=1.0000,0.5000;HP=2;HapScore=2;MGOF=31;MMLQ=24;MQ=66.95;NF=2,3;NR=16,12;PP=767,273;QD=46.158097804;SC=CGTCGCTCCGCCCGGGGGCGG;SbPval=0.6;Source=Platypus;TC=18;TCF=2;TCR=16;TR=18,15;WE=10633329;WS=10633311;set=Platypus	GT:AD:AF:DP	0/1:0,18:1.00:18
chr17	10633321	rs60373482	C	CG,G	1468.73	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=65.06;QD=39.70;SOR=1.432;set=HC	GT:AD:AF:DP	1/2:0,9,28:0.24,0.76:37
chr17	10633358	rs202311	C	T	259.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:7,12:0.63:19
chr17	11166782	rs62000368	G	A	1076.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:118,59:0.33:177
chr17	11455359	rs2969191	C	T	5042.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr17	11459012	rs1030055	G	C	2894.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr17	11511412	rs4792156	A	G	1872.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr17	11511457	rs11078022	C	T	701.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:87,40:0.31:127
chr17	11513661	rs2191072	C	T	1249.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr17	11522764	rs10852799	G	A	1233.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr17	11523082	rs9892256	A	G	3953.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr17	11532835	rs9895535	A	G	410.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:79,29:0.27:108
chr17	11543520	rs11653848	T	C	330.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:19,14:0.42:33
chr17	11550340	rs11870495	T	C	316.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.840;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.44;ReadPosRankSum=-0.487;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:72,20:0.22:92
chr17	11555990	rs4792159	T	C	242.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:2,10:0.83:12
chr17	11572669	rs73975043	G	A	3281.77	.	AC=1;AF=0.500;AN=2;DB;DP=650;set=Intersection	GT:AD:AF:DP	0/1:442,199:0.31:641
chr17	11583089	rs8071438	T	C	6808.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr17	11593516	rs145085168	C	T	3155.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:92,133:0.59:225
chr17	11593821	rs7220893	C	A	277.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:45,17:0.27:62
chr17	11604598	rs7214186	T	A	793.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr17	11622494	rs12945437	A	G	1263.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr17	11648332	rs3744578	C	T	5066.77	.	AC=1;AF=0.500;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	0/1:134,233:0.63:367
chr17	11648444	rs3744580	T	C	2044.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:41,81:0.66:122
chr17	11651139	rs3744582	C	T	574.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:45,27:0.38:72
chr17	11660722	rs11078030	G	T	782.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	11666674	rs2277657	T	C	254.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:16,12:0.43:28
chr17	11684571	rs2277659	G	C	395.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:30,19:0.39:49
chr17	11725337	rs117790039	C	T	985.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:78,56:0.42:134
chr17	11757556	rs12449553	C	G	5333.77	.	AC=1;AF=0.500;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	0/1:120,236:0.66:356
chr17	11778240	rs7211854	G	A	307.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:37,18:0.33:55
chr17	11786951	rs8070256	T	C	2654.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:45,116:0.72:161
chr17	11787936	rs11868929	A	G	2022.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:43,96:0.69:139
chr17	11787975	rs11078042	T	C	2961.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr17	11806266	rs3815269	T	C	823.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr17	11827353	rs2286300	T	C	2339.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:53,100:0.65:153
chr17	11835321	rs2286305	C	T	1740.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:50,80:0.62:130
chr17	11840528	rs2240521	A	C	1016.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:9,34:0.79:43
chr17	11865110	rs11656157	G	A	1862.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:39,72:0.65:111
chr17	11865462	rs1990236	G	A	3963.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:86,166:0.66:252
chr17	11881377	.	CCA	C	3964.73	.	AC=1;AF=0.500;AN=2;DP=350;set=Intersection	GT:AD:AF:DP	0/1:229,114:0.33:343
chr17	11886864	rs17613212	T	C	380.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:15,18:0.55:33
chr17	11887518	rs34299203	GA	G	380.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.499;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.884;QD=2.78;ReadPosRankSum=1.484;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:87,50:0.36:137
chr17	11924120	rs9892151	T	C	182.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:5,9:0.64:14
chr17	11985459	.	TA	T	48.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.754;ClippingRankSum=0.000;DP=107;ExcessHet=3.0103;FS=1.285;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.57;ReadPosRankSum=1.318;SOR=0.959;set=HC	GT:AD:AF:DP	0/1:67,18:0.21:85
chr17	11985504	rs11654465	T	C	862.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:20,32:0.62:52
chr17	12028818	.	G	GA	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.150;ClippingRankSum=0.000;DP=82;ExcessHet=3.0103;FS=3.363;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.54;ReadPosRankSum=-0.557;SOR=0.263;set=HC	GT:AD:AF:DP	0/1:51,11:0.18:62
chr17	12620761	rs12944823	A	G	10823.77	.	AC=2;AF=1.00;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	1/1:0,404:1.00:404
chr17	12620897	rs12602716	G	A	1952.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr17	12647490	rs12709295	T	C	6792.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr17	12656417	rs28730824	T	C	5551.77	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:96,227:0.70:323
chr17	12656711	rs4792277	G	A	2730.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:47,97:0.67:144
chr17	12799985	rs2302068	G	A	2115.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:36,89:0.71:125
chr17	12820421	rs35221864	T	C	351.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:15,16:0.52:31
chr17	12820632	rs12451747	A	C	311.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:11,15:0.58:26
chr17	12832063	rs1317990	G	T	105.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:12,6:0.33:18
chr17	12860183	.	A	AAC	341.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.714;ClippingRankSum=0.000;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.59;ReadPosRankSum=2.794;SOR=0.603;set=HC	GT:AD:AF:DP	0/1:30,15:0.33:45
chr17	12876431	rs878065	A	G	702.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:51,34:0.40:85
chr17	12877530	rs1109767	C	T	591.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:60,34:0.36:94
chr17	12890651	rs57940266	T	G	3598.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:89,148:0.62:237
chr17	12897669	rs56329828	C	T	3820.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:87,171:0.66:258
chr17	12898295	rs17552022	T	C	5921.77	.	AC=1;AF=0.500;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	0/1:110,274:0.71:384
chr17	12898454	rs73981604	C	A	902.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:20,38:0.66:58
chr17	12898994	rs2286338	C	G	829.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:9,28:0.76:37
chr17	12899668	rs111710032	T	C	1001.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:77,51:0.40:128
chr17	12899726	rs4792308	A	G	3350.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:84,152:0.64:236
chr17	12899963	rs11545302	T	C	3767.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:86,176:0.67:262
chr17	12901544	rs11443554	T	TA	1127.73	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:12,45:0.79:57
chr17	12901688	rs56405144	G	A	4999.77	.	AC=1;AF=0.500;AN=2;DB;DP=347;MQ=60.03;set=Intersection	GT:AD:AF:DP	0/1:118,225:0.66:343
chr17	12903599	rs3760316	A	G	1435.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:24,63:0.72:87
chr17	12905525	rs56341811	TG	T	969.73	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:16,33:0.67:49
chr17	12905574	rs55674356	T	A	2124.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:43,87:0.67:130
chr17	12905743	rs55825263	G	A	5741.77	.	AC=1;AF=0.500;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	0/1:115,259:0.69:374
chr17	12907023	rs77703211	G	A	1484.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:32,63:0.66:95
chr17	12908204	rs4792309	T	C	1062.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:22,43:0.66:65
chr17	12908247	rs17639379	T	A	2122.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:41,91:0.69:132
chr17	12909046	rs3217019	A	AATC	1745.73	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:33,45:0.58:78
chr17	12914832	rs73981621	C	T	848.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.890;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=9.766;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.52;ReadPosRankSum=-1.666;SOR=3.126;set=HC	GT:AD:AF:DP	0/1:11,21:0.66:32
chr17	12914832	.	CCA	TCC	794	.	AC=1;AF=0.500;AN=2;BRF=0.25;FR=0.5000;HP=4;HapScore=2;MGOF=7;MMLQ=27;MQ=60.0;NF=16;NR=1;PP=794;QD=49.8510514625;SC=TCTCATTCCCCCAACGGGCCA;SbPval=0.91;Source=Platypus;TC=29;TCF=25;TCR=4;TR=17;WE=12914842;WS=12914822;set=Platypus	GT:AD:AF:DP	0/1:12,17:0.59:29
chr17	12914834	rs73981622	A	C	848.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.926;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=10.142;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.72;ReadPosRankSum=-1.820;SOR=3.215;set=HC	GT:AD:AF:DP	0/1:11,22:0.67:33
chr17	12914920	rs41494747	A	G	2080.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:49,96:0.66:145
chr17	12915009	rs4792311	G	A	4203.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:77,193:0.71:270
chr17	12916388	rs74886662	C	T	1673.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:22,64:0.74:86
chr17	12916606	rs74556312	A	G	3428.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:60,150:0.71:210
chr17	12917550	rs138536836	C	T	132.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr17	12917856	rs56004910	G	A	525.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:29,25:0.46:54
chr17	12920062	.	CA	C	56.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.500;ClippingRankSum=0.000;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.10;ReadPosRankSum=-0.179;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:15,12:0.44:27
chr17	12920260	rs58809197	A	G	7279.77	.	AC=1;AF=0.500;AN=2;DB;DP=490;set=Intersection	GT:AD:AF:DP	0/1:155,318:0.67:473
chr17	13399486	rs200853608	A	ATT	1314.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.159;ClippingRankSum=0.000;DB;DP=268;ExcessHet=3.0103;FS=3.647;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.826;QD=4.98;ReadPosRankSum=-1.720;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:178,86:0.33:264
chr17	13399616	rs62057033	A	T	1426.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.292;ClippingRankSum=0.000;DB;DP=267;ExcessHet=3.0103;FS=3.842;MLEAC=1;MLEAF=0.500;MQ=53.29;MQRankSum=0.441;QD=5.60;ReadPosRankSum=-0.475;SOR=0.965;set=HC	GT:AD:AF:DP	0/1:174,81:0.32:255
chr17	13446924	rs9913045	G	A	225.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:42,16:0.28:58
chr17	13928074	rs62052312	A	C	550.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.633;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=1.344;MLEAC=1;MLEAF=0.500;MQ=54.72;MQRankSum=1.141;QD=2.54;ReadPosRankSum=1.372;SOR=0.816;set=HC	GT:AD:AF:DP	0/1:174,43:0.20:217
chr17	13972811	rs6502330	G	A	894.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr17	13977813	rs143814384	C	CTTTA	3675.73	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr17	13980350	rs2072279	G	A	1483.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:31,56:0.64:87
chr17	14005373	rs1017076	C	T	2601.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr17	14005386	rs2108683	T	C	2979.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr17	14005439	rs2159132	G	A	1825.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:44,81:0.65:125
chr17	14005647	rs3217030	C	CAT	358.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.626;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=11.572;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.55;ReadPosRankSum=-1.173;SOR=0.036;set=HC	GT:AD:AF:DP	0/1:22,12:0.35:34
chr17	14063389	rs7212977	G	T	1101.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr17	14095309	rs2230354	A	G	8371.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,319:1.00:319
chr17	14095550	rs200573622	G	A	781.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.372;ClippingRankSum=0.000;DB;DP=420;ExcessHet=3.0103;FS=2.296;MLEAC=1;MLEAF=0.500;MQ=50.74;MQRankSum=4.548;QD=1.87;ReadPosRankSum=3.837;SOR=0.922;set=HC	GT:AD:AF:DP	0/1:338,81:0.19:419
chr17	14095566	rs151441	T	C	2429.77	.	AC=1;AF=0.500;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	0/1:232,114:0.33:346
chr17	14095639	rs373313742	A	G	1470.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.316;ClippingRankSum=0.000;DB;DP=338;ExcessHet=3.0103;FS=41.871;MLEAC=1;MLEAF=0.500;MQ=49.11;MQRankSum=-2.757;QD=4.35;ReadPosRankSum=-5.608;SOR=1.951;set=HC	GT:AD:AF:DP	0/1:249,89:0.26:338
chr17	14095682	rs2158978	T	C	5379.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr17	14110041	rs4792446	G	A	720.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:79,40:0.34:119
chr17	14139191	rs148329066	C	G	519.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.160;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=1.960;MLEAC=1;MLEAF=0.500;MQ=45.29;MQRankSum=1.262;QD=16.24;ReadPosRankSum=-1.278;SOR=0.357;set=HC	GT:AD:AF:DP	0/1:11,21:0.66:32
chr17	14139565	rs4791563	T	C	803.90	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:4,29:0.88:33
chr17	14139580	.	T	C	55	.	AC=1;AF=0.500;AN=2;BRF=0.31;FR=0.5000;HP=1;HapScore=2;MGOF=18;MMLQ=28;MQ=53.5;NF=4;NR=3;PP=55;QD=12.8244589353;SC=GGGTTAGGGCTAGTGGCTACA;SbPval=0.61;Source=Platypus;TC=34;TCF=20;TCR=14;TR=7;WE=14139588;WS=14139570;set=Platypus	GT:AD:AF:DP	1/0:27,7:0.21:34
chr17	14139774	rs4791564	C	A	1651.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.33;QD=27.53;SOR=0.831;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr17	14139891	rs62052131	A	C	3109.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.45;QD=25.49;SOR=0.726;set=HC	GT:AD:AF:DP	1/1:0,122:1.00:122
chr17	14140080	rs17679866	C	T	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.009;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=1.695;MLEAC=1;MLEAF=0.500;MQ=55.14;MQRankSum=-0.470;QD=1.29;ReadPosRankSum=0.610;SOR=0.360;set=HC	GT:AD:AF:DP	0/1:27,7:0.21:34
chr17	14140103	rs4792453	A	G	756.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr17	14248423	rs9906855	T	C	5727.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:4,221:0.98:225
chr17	15207364	rs13961	T	G	6771.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr17	15215660	rs2286516	T	C	4780.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:108,217:0.67:325
chr17	15217389	rs230897	G	A	630.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:86,38:0.31:124
chr17	15217437	rs230898	C	G	1105.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:165,71:0.30:236
chr17	15222535	rs11387328	C	CA	289.73	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:6,13:0.68:19
chr17	15343524	rs71150251	C	CCTT	11509.73	.	AC=2;AF=1.00;AN=2;DB;DP=274;MQ=60.04;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr17	15406044	rs149635358	CTT	C	103.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.226;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=4.869;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.70;ReadPosRankSum=-0.213;SOR=1.927;set=HC	GT:AD:AF:DP	0/1:23,5:0.18:28
chr17	15406123	rs71974269	CCTCT	C,CCTCTCT	1489.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.015;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=32.39;ReadPosRankSum=1.349;SOR=1.105;set=HC	GT:AD:AF:DP	1/2:2,30,14:0.65,0.30:46
chr17	15406197	rs12150518	A	T	777.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:78,42:0.35:120
chr17	15406442	rs139005045	G	C	3754.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:89,173:0.66:262
chr17	15441330	rs7359507	G	C	731.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.889;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=43.70;MQRankSum=-1.754;QD=10.45;ReadPosRankSum=0.735;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:42,28:0.40:70
chr17	15441486	rs79731346	G	A	2162.77	.	AC=1;AF=0.500;AN=2;DB;DP=495;set=Intersection	GT:AD:AF:DP	0/1:336,155:0.32:491
chr17	15443734	rs200768112	A	G	1029.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.309;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=1.474;MLEAC=1;MLEAF=0.500;MQ=43.06;MQRankSum=-1.067;QD=11.57;ReadPosRankSum=0.972;SOR=1.069;set=HC	GT:AD:AF:DP	0/1:60,29:0.33:89
chr17	15443742	rs138309602	C	G	1094.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.932;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=2.659;MLEAC=1;MLEAF=0.500;MQ=43.71;MQRankSum=-1.381;QD=10.63;ReadPosRankSum=1.299;SOR=1.083;set=HC	GT:AD:AF:DP	0/1:70,33:0.32:103
chr17	15449336	rs58269369	C	T	151.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:32,10:0.24:42
chr17	15466716	.	G	T	445.77	.	AC=1;AF=0.500;AN=2;DP=42;set=Intersection	GT:AD:AF:DP	0/1:19,22:0.54:41
chr17	15468718	rs200463402	G	A	1013.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:50,44:0.47:94
chr17	15468765	.	CA	C	353.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.256;ClippingRankSum=0.000;DP=198;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.70;MQRankSum=-6.656;QD=1.84;ReadPosRankSum=-0.436;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:131,61:0.32:192
chr17	15477417	rs28420774	A	G	263.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:87,22:0.20:109
chr17	15492409	rs151442	T	C	1723.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.63;QD=35.91;SOR=2.208;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr17	15492410	rs76213106	G	A	252.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.404;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=43.70;MQRankSum=1.605;QD=4.96;ReadPosRankSum=-0.236;SOR=0.871;set=HC	GT:AD:AF:DP	0/1:37,14:0.27:51
chr17	15492426	rs28445278	C	T	2165.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.52;QD=30.08;SOR=2.239;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr17	15496612	rs148830167	G	A	1310.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:145,69:0.32:214
chr17	15496730	rs8078150	A	G	3300.77	.	AC=1;AF=0.500;AN=2;DB;DP=552;set=Intersection	GT:AD:AF:DP	0/1:360,189:0.34:549
chr17	15498181	rs12601532	A	G	1156.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:200,74:0.27:274
chr17	15498211	rs61274670	GAAAAGATA	G	2115.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.225;ClippingRankSum=0.000;DB;DP=246;ExcessHet=3.0103;FS=0.532;MLEAC=1;MLEAF=0.500;MQ=57.86;MQRankSum=-12.820;QD=8.74;ReadPosRankSum=2.241;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:178,64:0.26:242
chr17	15499737	rs762697	A	G	116.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.663;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=3.537;MLEAC=1;MLEAF=0.500;MQ=55.05;MQRankSum=-2.494;QD=1.50;ReadPosRankSum=-2.300;SOR=0.252;set=HC	GT:AD:AF:DP	0/1:66,12:0.15:78
chr17	15508447	rs2190757	C	A	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.770;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=7.116;MLEAC=1;MLEAF=0.500;MQ=56.89;MQRankSum=-1.454;QD=0.56;ReadPosRankSum=2.020;SOR=0.062;set=HC	GT:AD:AF:DP	0/1:49,8:0.14:57
chr17	15517406	rs56926918	G	A	58.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.683;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=10.643;MLEAC=1;MLEAF=0.500;MQ=57.79;MQRankSum=-9.170;QD=0.68;ReadPosRankSum=0.067;SOR=0.106;set=HC	GT:AD:AF:DP	0/1:73,13:0.15:86
chr17	15531942	rs62070417	C	A	614.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.846;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=0.937;MLEAC=1;MLEAF=0.500;MQ=47.53;MQRankSum=-1.458;QD=6.03;ReadPosRankSum=0.716;SOR=0.858;set=HC	GT:AD:AF:DP	0/1:70,32:0.31:102
chr17	15554504	rs4792642	G	A	864.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:125,50:0.29:175
chr17	15602900	rs2601942	T	G	123.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.513;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.63;ReadPosRankSum=1.754;SOR=0.197;set=HC	GT:AD:AF:DP	0/1:15,7:0.32:22
chr17	15602924	rs72819895	G	C	233.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:16,11:0.41:27
chr17	15602950	rs12449956	G	T	144.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=1.382;MLEAC=1;MLEAF=0.500;MQ=59.10;MQRankSum=-3.956;QD=2.78;ReadPosRankSum=1.939;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:41,11:0.21:52
chr17	15603021	rs12452845	T	C	711.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.296;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=1.805;MLEAC=1;MLEAF=0.500;MQ=57.63;MQRankSum=-8.513;QD=5.48;ReadPosRankSum=0.237;SOR=0.462;set=HC	GT:AD:AF:DP	0/1:104,26:0.20:130
chr17	15603031	rs12450403	G	T	672.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.014;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=1.803;MLEAC=1;MLEAF=0.500;MQ=57.82;MQRankSum=-9.137;QD=4.77;ReadPosRankSum=1.055;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:116,25:0.18:141
chr17	15604395	rs77257979	TG	CA	3442.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr17	15604444	rs4792655	A	G	5590.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:2,217:0.99:219
chr17	15607713	rs55992307	C	T	1052.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:20,43:0.68:63
chr17	15611495	rs3760299	T	C	1281.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.309;ClippingRankSum=0.000;DB;DP=309;ExcessHet=3.0103;FS=3.719;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.23;ReadPosRankSum=0.162;SOR=0.492;set=HC	GT:AD:AF:DP	0/1:224,79:0.26:303
chr17	15613021	rs2654397	C	T	425.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.97;QD=23.65;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr17	15620647	rs61435333	G	A	2237.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.47;QD=29.06;SOR=2.043;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr17	15690210	rs376068178	AC	A	1113.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.82;QD=30.10;SOR=3.855;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr17	15884227	rs2286796	A	G	690.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:14,28:0.67:42
chr17	15884561	rs10491104	C	T	513.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:20,21:0.51:41
chr17	15903602	rs758853	C	A	447.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.345;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.99;ReadPosRankSum=2.378;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:8,24:0.75:32
chr17	15905190	rs3760298	A	G	1531.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:40,67:0.63:107
chr17	15907084	.	CAT	C	84.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.279;ClippingRankSum=0.000;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=2.702;QD=1.05;ReadPosRankSum=-1.235;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:71,10:0.12:81
chr17	15909728	rs3760297	A	G	145.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.748;ClippingRankSum=-0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.10;ReadPosRankSum=-0.701;SOR=1.201;set=HC	GT:AD:AF:DP	0/1:9,9:0.50:18
chr17	15928584	rs2301652	T	G	741.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:18,33:0.65:51
chr17	15928600	rs2301651	G	C	588.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:15,25:0.62:40
chr17	15930087	rs35168566	G	A	709.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:15,27:0.64:42
chr17	15943910	rs1075901	T	C	640.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:14,25:0.64:39
chr17	15950198	rs1079533	G	A	1012.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:18,41:0.69:59
chr17	15961951	rs2157991	A	G	1126.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:21,48:0.70:69
chr17	15961993	rs2157990	T	A	741.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:16,29:0.64:45
chr17	15967420	.	C	T	1651.77	.	AC=1;AF=0.500;AN=2;DP=128;set=Intersection	GT:AD:AF:DP	0/1:48,71:0.60:119
chr17	15968143	rs2285583	T	C	832.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:35,37:0.51:72
chr17	15973844	rs12942295	A	T	3799.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:73,165:0.69:238
chr17	15977005	rs11078330	A	T	1147.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:28,44:0.61:72
chr17	16004537	rs62073621	G	A	558.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:14,22:0.61:36
chr17	16005187	rs2285580	T	C	603.84	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:3,23:0.88:26
chr17	16011493	rs35417050	CA	C	204.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.331;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=1.792;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.82;ReadPosRankSum=-0.683;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:8,22:0.73:30
chr17	16024701	rs11410605	C	CA	348.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.441;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.72;ReadPosRankSum=1.010;SOR=1.115;set=HC	GT:AD:AF:DP	0/1:17,23:0.57:40
chr17	16041578	.	T	TA	254.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.382;ClippingRankSum=0.000;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.93;ReadPosRankSum=-1.090;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:96,36:0.27:132
chr17	16041636	rs2875265	T	C	811.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:25,38:0.60:63
chr17	16046845	rs2285579	A	T	543.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:12,21:0.64:33
chr17	16049626	rs11078333	A	T	781.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.784;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=5.055;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=11.33;ReadPosRankSum=-1.694;SOR=0.191;set=HC	GT:AD:AF:DP	0/1:23,46:0.67:69
chr17	16052606	rs71299857	C	CATATAT	608.73	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:21,20:0.49:41
chr17	16097665	.	TA	T	219.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.779;ClippingRankSum=0.000;DP=85;ExcessHet=3.0103;FS=2.736;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=2.014;QD=2.65;ReadPosRankSum=-0.120;SOR=0.318;set=HC	GT:AD:AF:DP	0/1:58,25:0.30:83
chr17	16185248	rs3785626	T	G	951.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	16221271	rs56228407	A	AC	2482.73	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr17	16221319	rs9890539	T	C	886.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:18,35:0.66:53
chr17	16229232	rs15739	A	G	1212.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:51,58:0.53:109
chr17	16246016	rs7477	A	C	412.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:10,16:0.62:26
chr17	16248083	rs9907546	T	A	1557.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.235;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=6.022;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.75;ReadPosRankSum=-0.082;SOR=1.368;set=HC	GT:AD:AF:DP	0/1:27,66:0.71:93
chr17	16251859	rs2286666	A	G	2784.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr17	16256240	rs3095172	C	A	1201.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr17	16256686	.	G	GCGGAGGCCC	273.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=17.11;ReadPosRankSum=0.931;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:8,8:0.50:16
chr17	16323589	rs4273076	C	A	3480.77	.	AC=1;AF=0.500;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	0/1:257,122:0.32:379
chr17	16323608	rs68189233	ATAGT	A	2912.73	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:206,88:0.30:294
chr17	16325968	rs8121	A	G	1761.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:178,95:0.35:273
chr17	16326005	rs1129235	A	C	2558.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:224,136:0.38:360
chr17	16326253	rs7225104	G	T	2277.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr17	16329286	rs34192401	C	T	1147.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:23,47:0.67:70
chr17	16330919	rs12936240	G	T	4735.77	.	AC=1;AF=0.500;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	0/1:103,213:0.67:316
chr17	16331820	rs4792742	T	C	939.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:103,48:0.32:151
chr17	16332072	rs34166276	A	G	615.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:11,27:0.71:38
chr17	16335191	rs34786363	C	A	2806.77	.	AC=1;AF=0.500;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	0/1:296,155:0.34:451
chr17	16336828	rs7213055	G	A	906.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:108,51:0.32:159
chr17	16336992	rs14039	C	G	832.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:113,48:0.30:161
chr17	16340316	rs7214366	A	C	491.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:51,26:0.34:77
chr17	16342813	rs4072454	T	C	1846.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:206,98:0.32:304
chr17	16342833	rs11871958	T	C	4462.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:96,189:0.66:285
chr17	16344314	rs55710649	A	ACT	2838.73	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:205,85:0.29:290
chr17	16344600	rs4617905	T	C	9273.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.210;ClippingRankSum=0.000;DB;DP=285;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=32.65;ReadPosRankSum=-1.544;SOR=0.312;set=HC	GT:AD:AF:DP	1/1:1,283:1.00:284
chr17	16344600	.	TG	CC,CG	2107	.	AC=1,0;AF=0.500,0.00;AN=2;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=3;MMLQ=22;MQ=60.0;NF=34,108;NR=26,81;PP=564,2107;QD=10.2911312477;SC=GGTGAACCTATGGTTTTCTGA;SbPval=0.53;Source=Platypus;TC=193;TCF=110;TCR=83;TR=60,189;WE=16344609;WS=16344590;set=Platypus	GT:AF:DP	0/1:0.31:193
chr17	16344601	rs4622550	G	C	1707.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.848;ClippingRankSum=0.000;DB;DP=289;ExcessHet=3.0103;FS=1.492;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.93;ReadPosRankSum=1.343;SOR=0.595;set=HC	GT:AD:AF:DP	0/1:189,99:0.34:288
chr17	16344875	rs9251	C	T	242.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:13,10:0.43:23
chr17	16346932	rs4792745	G	T	716.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:64,39:0.38:103
chr17	16347567	rs4438345	T	G	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.784;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.82;ReadPosRankSum=0.596;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:24,5:0.17:29
chr17	16350156	rs1009237	T	C	273.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:31,14:0.31:45
chr17	16350239	rs2882581	A	G	2716.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;QD=31.96;SOR=4.332;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr17	16351592	rs2351084	T	C	3411.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr17	16527795	rs8065506	C	A	1178.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:121,66:0.35:187
chr17	16537207	rs16959888	C	T	2250.77	.	AC=1;AF=0.500;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	0/1:237,128:0.35:365
chr17	16623497	.	G	GT	203.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.077;ClippingRankSum=0.000;DP=168;ExcessHet=3.0103;FS=2.630;MLEAC=1;MLEAF=0.500;MQ=57.07;MQRankSum=-4.376;QD=1.27;ReadPosRankSum=-0.819;SOR=1.046;set=HC	GT:AD:AF:DP	0/1:129,32:0.20:161
chr17	16624049	.	T	C	355.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.132;ClippingRankSum=0.000;DP=179;ExcessHet=3.0103;FS=14.030;MLEAC=1;MLEAF=0.500;MQ=49.41;MQRankSum=-9.078;QD=1.99;ReadPosRankSum=-2.000;SOR=2.162;set=HC	GT:AD:AF:DP	0/1:146,33:0.18:179
chr17	16664991	rs145983138	G	A	649.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.958;ClippingRankSum=0.000;DB;DP=276;ExcessHet=3.0103;FS=0.548;MLEAC=1;MLEAF=0.500;MQ=47.63;MQRankSum=-5.014;QD=2.36;ReadPosRankSum=-1.370;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:219,56:0.20:275
chr17	16665569	rs141671706	C	T	145.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.185;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.96;MQRankSum=-4.400;QD=1.31;ReadPosRankSum=-0.963;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:94,17:0.15:111
chr17	16675944	rs201462518	C	A	659.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.572;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=1.136;MLEAC=1;MLEAF=0.500;MQ=46.41;MQRankSum=-2.081;QD=10.15;ReadPosRankSum=-0.803;SOR=0.458;set=HC	GT:AD:AF:DP	0/1:34,31:0.48:65
chr17	16676047	rs200699778	C	T	343.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.433;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=0.751;MLEAC=1;MLEAF=0.500;MQ=46.60;MQRankSum=-1.448;QD=2.29;ReadPosRankSum=0.330;SOR=0.823;set=HC	GT:AD:AF:DP	0/1:118,32:0.21:150
chr17	16734809	rs2688010	A	G	1656.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.79;QD=27.16;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr17	16734869	rs62074145	A	G	1494.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.15;QD=26.69;SOR=1.412;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr17	16855878	rs8072293	C	T	10615.77	.	AC=2;AF=1.00;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	1/1:0,408:1.00:408
chr17	16891946	rs12950509	C	G	514.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:49,28:0.36:77
chr17	16892265	rs9907308	G	A	930.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:172,59:0.26:231
chr17	17039561	rs3833098	CCAG	C	1070.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.507;ClippingRankSum=0.000;DB;DP=340;ExcessHet=3.0103;FS=0.619;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.44;ReadPosRankSum=0.689;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:198,43:0.18:241
chr17	17118689	rs34311146	G	A	2989.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:56,128:0.70:184
chr17	17122286	rs8065572	C	T	1107.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr17	17158128	rs71152853	G	GA	155.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.173;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=1.429;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.16;ReadPosRankSum=0.421;SOR=1.034;set=HC	GT:AD:AF:DP	0/1:50,22:0.31:72
chr17	17247985	rs7212012	G	A	2540.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:54,99:0.65:153
chr17	17394611	rs1242489	G	A	1089.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:38,48:0.56:86
chr17	17409401	rs3816511	G	A	1650.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:29,69:0.70:98
chr17	17409560	rs7946	C	T	2947.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:84,140:0.62:224
chr17	17409709	rs1918249	T	A	716.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:11,25:0.69:36
chr17	17412032	rs4646407	G	C	4977.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:93,221:0.70:314
chr17	17425631	rs897453	C	T	4080.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:95,183:0.66:278
chr17	17480195	rs2124344	A	G	8183.77	.	AC=1;AF=0.500;AN=2;DB;DP=526;set=Intersection	GT:AD:AF:DP	0/1:161,361:0.69:522
chr17	17682484	rs1006656	G	A	2925.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr17	17697093	.	C	CCAG	1312.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.652;ClippingRankSum=0.000;DP=329;ExcessHet=3.0103;FS=4.377;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-0.852;QD=5.94;ReadPosRankSum=0.522;SOR=0.451;set=HC	GT:AD:AF:DP	0/1:157,64:0.29:221
chr17	17698254	rs8067439	G	A	15573.77	.	AC=2;AF=1.00;AN=2;DB;DP=563;set=Intersection	GT:AD:AF:DP	1/1:0,554:1.00:554
chr17	17707105	rs3818717	T	C	10842.77	.	AC=2;AF=1.00;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	1/1:0,387:1.00:387
chr17	17715317	rs2297508	C	G	2613.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr17	17719503	rs7501788	G	T	924.78	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.461;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=11.295;MLEAC=2;MLEAF=1.000;MQ=59.78;MQRankSum=0.000;QD=23.71;ReadPosRankSum=-2.351;SOR=2.143;set=HC	GT:AD:AF:DP	1/1:2,37:0.95:39
chr17	17721457	rs4925115	A	G	1423.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr17	17726965	rs12936927	C	T	3784.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr17	17740164	rs60282872	GC	G	6025.73	.	AC=2;AF=1.00;AN=2;DB;DP=184;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.35;QD=35.03;SOR=2.387;set=HC	GT:AD:AF:DP	1/1:0,172:1.00:172
chr17	17750907	rs7501812	G	A	829.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr17	17767526	rs34383547	A	AT	306.80	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.108;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.30;ReadPosRankSum=1.133;SOR=0.489;set=HC	GT:AD:AF:DP	0/1:14,28:0.67:42
chr17	17770355	rs11657074	G	A	997.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr17	17772622	rs34879782	G	GA	964.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.202;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=0.824;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.48;ReadPosRankSum=1.658;SOR=0.544;set=HC	GT:AD:AF:DP	0/1:51,78:0.60:129
chr17	17774118	rs9907287	C	T	2241.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr17	17948475	rs2955355	G	A	5095.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr17	17997209	rs2230316	G	A	8018.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr17	18003671	rs2272570	T	G	2484.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr17	18003845	rs854813	C	T	10902.77	.	AC=2;AF=1.00;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	1/1:0,402:1.00:402
chr17	18034131	.	AGT	A	85.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.178;ClippingRankSum=0.000;DP=67;ExcessHet=3.0103;FS=1.922;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.29;ReadPosRankSum=-0.872;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:13,7:0.35:20
chr17	18039263	rs854785	A	T	553.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:20,22:0.52:42
chr17	18041507	rs2280777	C	T	13031.77	.	AC=2;AF=1.00;AN=2;DB;DP=492;set=Intersection	GT:AD:AF:DP	1/1:0,483:1.00:483
chr17	18042276	rs2075658	A	C	6273.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr17	18042527	rs854783	A	G	3188.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr17	18042976	rs854782	C	A	3008.73	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr17	18043766	rs854780	C	G	11803.77	.	AC=2;AF=1.00;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	1/1:0,430:1.00:430
chr17	18044270	rs854779	T	C	1292.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr17	18046058	rs854778	A	C	6978.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:2,261:0.99:263
chr17	18046898	rs854777	T	C	1891.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr17	18047671	rs11421905	G	GC	1742.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr17	18047772	rs11421904	T	TC	6051.73	.	AC=2;AF=1.00;AN=2;DB;DP=177;MQ=60.06;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr17	18051975	rs854774	T	C	7738.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr17	18052466	rs4303606	A	G	6469.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr17	18052867	rs2955379	T	C	4319.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr17	18054868	rs854773	G	T	7905.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:3,305:0.99:308
chr17	18054917	rs865923	T	C	3423.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr17	18055229	rs854772	G	A	4660.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:2,174:0.99:176
chr17	18057167	rs712270	A	T	15035.77	.	AC=2;AF=1.00;AN=2;DB;DP=575;set=Intersection	GT:AD:AF:DP	1/1:0,572:1.00:572
chr17	18057272	rs712271	A	G	9576.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:0,344:1.00:344
chr17	18058521	rs712272	C	T	15579.77	.	AC=2;AF=1.00;AN=2;DB;DP=573;set=Intersection	GT:AD:AF:DP	1/1:0,569:1.00:569
chr17	18059494	rs861278	C	T	5358.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr17	18060192	rs854771	G	A	1540.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr17	18062443	rs854807	G	A	4070.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr17	18063441	rs712273	T	C	2940.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr17	18070761	rs854796	G	A	2837.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr17	18077175	rs854800	T	C	8231.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr17	18087502	.	C	T	889.77	.	AC=1;AF=0.500;AN=2;DP=126;set=Intersection	GT:AD:AF:DP	0/1:78,45:0.37:123
chr17	18111802	rs142135062	GTTTTTGT	G	5779.73	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr17	18111868	rs1378602	G	A	6173.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr17	18128956	.	GGGC	G	67.73	.	AC=1;AF=0.500;AN=2;DP=27;set=Intersection	GT:AD:AF:DP	0/1:21,4:0.16:25
chr17	18133495	rs2290502	G	A	2402.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr17	18135753	rs2290503	T	C	6632.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr17	18137141	rs2290505	A	G	11902.77	.	AC=2;AF=1.00;AN=2;DB;DP=466;set=Intersection	GT:AD:AF:DP	1/1:0,456:1.00:456
chr17	18144683	rs2605138	T	C	4547.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:1,153:0.99:154
chr17	18144720	rs2245737	C	T	8037.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr17	18145379	rs2746030	G	A	9074.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:1,312:1.00:313
chr17	18149854	rs2856289	A	G	11556.77	.	AC=2;AF=1.00;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	1/1:0,421:1.00:421
chr17	18150444	rs71155326	A	AC	1245.73	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:45,66:0.59:111
chr17	18156541	rs2071241	A	G	3351.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr17	18164404	rs2605142	C	T	709.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:52,37:0.42:89
chr17	18167505	rs2605143	T	C	776.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:141,50:0.26:191
chr17	18178012	rs3215557	C	CG	268.73	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:32,10:0.24:42
chr17	18181794	rs8071231	A	G	229.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:41,15:0.27:56
chr17	18184011	rs6502644	G	T	1895.77	.	AC=1;AF=0.500;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	0/1:237,111:0.32:348
chr17	18193941	rs2230154	G	A	1322.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:89,68:0.43:157
chr17	18194362	rs6502645	C	T	2773.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr17	18205750	rs66697088	TGGAGAGTGAA	T	706.73	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:29,20:0.41:49
chr17	18208334	rs7225932	C	A	1147.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:111,67:0.38:178
chr17	18208544	rs7207123	G	A	860.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:87,47:0.35:134
chr17	18211537	.	CAAAAAAAAAAAAAAAA	C	284.73	.	AC=1;AF=0.500;AN=2;ClippingRankSum=-0.000;DP=11;ExcessHet=3.0103;FS=6.532;MLEAC=1;MLEAF=0.500;MQ=58.73;MQRankSum=-0.000;QD=31.64;SOR=2.788;set=HC	GT:AD:AF:DP	0/1:1,8:0.89:9
chr17	18219742	rs34824853	G	A	1386.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:165,73:0.31:238
chr17	18220674	rs8080966	C	T	1989.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:197,103:0.34:300
chr17	18220770	rs1563632	G	A	1800.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:164,97:0.37:261
chr17	18221134	rs1563631	C	T	2692.77	.	AC=1;AF=0.500;AN=2;DB;DP=498;set=Intersection	GT:AD:AF:DP	0/1:343,151:0.31:494
chr17	18226177	rs4925171	G	T	4714.77	.	AC=1;AF=0.500;AN=2;DB;DP=595;set=Intersection	GT:AD:AF:DP	0/1:343,245:0.42:588
chr17	18232017	rs3783	G	C	97.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:14,6:0.30:20
chr17	18232096	rs1979277	G	A	194.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.283;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=1.300;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.06;ReadPosRankSum=0.584;SOR=0.395;set=HC	GT:AD:AF:DP	0/1:35,13:0.27:48
chr17	18233810	rs12937300	T	C	744.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:52,35:0.40:87
chr17	18239012	rs2273028	G	A	746.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:92,45:0.33:137
chr17	18259415	rs12950117	A	G	95.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:25,7:0.22:32
chr17	18284262	rs570145	G	A	2236.77	.	AC=1;AF=0.500;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	0/1:234,130:0.36:364
chr17	18286916	rs112094897	A	AG	3552.73	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr17	18286922	rs111736884	A	AG	3786.73	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr17	18286930	rs200680358	A	AG	3382.73	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr17	18286938	rs145486982	A	AG	3167.73	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr17	18291544	rs586322	A	G	477.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.629;ClippingRankSum=0.000;DB;DP=224;ExcessHet=3.0103;FS=7.402;MLEAC=1;MLEAF=0.500;MQ=58.81;MQRankSum=-6.540;QD=2.14;ReadPosRankSum=0.138;SOR=1.251;set=HC	GT:AD:AF:DP	0/1:178,45:0.20:223
chr17	18291618	rs586757	C	T	728.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:126,50:0.28:176
chr17	18314964	.	T	G	2962	.	AC=1;AF=0.500;AN=2;FR=0.5000;HP=1;HapScore=1;MMLQ=23;MQ=55.61;NF=152;NR=88;PP=2962;QD=20;SC=CCCAATCGTCTTCTTTCCCAG;SbPval=0.89;Source=Platypus;TC=682;TCF=367;TCR=315;TR=240;WE=18314974;set=Platypus	GT:AD:AF:DP	1/0:442,240:0.35:682
chr17	18315107	rs113907775	C	CCT	2170.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.338;ClippingRankSum=0.000;DB;DP=1972;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.10;MQRankSum=-5.393;QD=1.13;ReadPosRankSum=0.528;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:1623,298:0.16:1921
chr17	18380135	rs4924879	C	G	1634.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:153,88:0.37:241
chr17	18380154	rs1682220	A	G	1665.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:156,94:0.38:250
chr17	18380260	rs77759205	C	A	723.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:73,39:0.35:112
chr17	18390993	rs3907320	C	T	181.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.235;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=43.02;MQRankSum=-0.118;QD=9.09;ReadPosRankSum=0.872;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:14,6:0.30:20
chr17	18391003	rs3907319	G	A	175.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.227;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=2.057;MLEAC=1;MLEAF=0.500;MQ=45.04;MQRankSum=-0.733;QD=8.37;ReadPosRankSum=1.068;SOR=1.302;set=HC	GT:AD:AF:DP	0/1:15,6:0.29:21
chr17	18395647	.	G	T	438.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.744;ClippingRankSum=0.000;DP=217;ExcessHet=3.0103;FS=2.419;MLEAC=1;MLEAF=0.500;MQ=56.77;MQRankSum=-11.645;QD=2.08;ReadPosRankSum=-0.372;SOR=0.962;set=HC	GT:AD:AF:DP	0/1:172,39:0.18:211
chr17	18395992	rs142011239	G	A	466.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:57,25:0.30:82
chr17	18456679	.	T	G	3351.77	.	AC=2;AF=1.00;AN=2;DP=127;set=Intersection	GT:AD:AF:DP	1/1:1,122:0.99:123
chr17	18498059	rs66528329	C	CA	531.73	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:149,27:0.15:176
chr17	18498497	rs59933375	G	GA	1379.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.167;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=3.343;MLEAC=1;MLEAF=0.500;MQ=58.08;MQRankSum=0.261;QD=9.20;ReadPosRankSum=-0.793;SOR=1.032;set=HC	GT:AD:AF:DP	0/1:58,92:0.61:150
chr17	18528623	rs34925025	A	G	1857.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:74,88:0.54:162
chr17	18541296	rs2386412	G	A	581.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:131,38:0.22:169
chr17	18541775	rs9902086	A	G	2147.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:66,90:0.58:156
chr17	18541852	.	ACCCAC	A,AGATGGTGCCCAC	3601.73	.	AC=1,0;AF=0.500,0.00;ALERT;AN=2;DP=160;set=Intersection	GT:AF:DP	0/1:0.47:160
chr17	18541857	.	C	CGATGGTG	3601.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=9.473;ClippingRankSum=0.000;DP=160;ExcessHet=3.0103;FS=5.948;MLEAC=1;MLEAF=0.500;MQ=54.41;MQRankSum=-9.275;QD=22.51;ReadPosRankSum=-0.559;SOR=1.137;set=HC	GT:AD:AF:DP	0/1:84,76:0.47:160
chr17	18541868	rs55807264	A	G	3561.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:95,102:0.52:197
chr17	18542074	rs9908833	G	A	6198.77	.	AC=1;AF=0.500;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	0/1:135,270:0.67:405
chr17	18542107	rs80078274	G	A	3713.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:93,154:0.62:247
chr17	18542432	rs201342024	T	C	159.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:78,14:0.15:92
chr17	18542519	rs74452761	T	G	602.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:55,34:0.38:89
chr17	18544287	rs200036130	T	A	37.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=18.87;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr17	18544321	rs200831553	G	A	35.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=17.87;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr17	18544520	rs201807927	G	A	793.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.676;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=48.65;MQRankSum=0.393;QD=17.64;ReadPosRankSum=0.089;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:14,31:0.69:45
chr17	18565143	rs55636053	T	C	296.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:48,17:0.26:65
chr17	18565350	rs9912644	G	C	2766.77	.	AC=1;AF=0.500;AN=2;DB;DP=509;set=Intersection	GT:AD:AF:DP	0/1:348,160:0.31:508
chr17	18565423	rs9912852	G	A	2090.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.968;ClippingRankSum=0.000;DB;DP=482;ExcessHet=3.0103;FS=0.605;MLEAC=1;MLEAF=0.500;MQ=59.75;MQRankSum=0.882;QD=4.36;ReadPosRankSum=-1.381;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:355,124:0.26:479
chr17	18574794	rs201620470	C	T	1060.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.837;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=2.283;MLEAC=1;MLEAF=0.500;MQ=41.87;MQRankSum=0.174;QD=6.89;ReadPosRankSum=-1.009;SOR=0.379;set=HC	GT:AD:AF:DP	0/1:105,49:0.32:154
chr17	18574872	rs146810330	G	T	2462.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.195;ClippingRankSum=0.000;DB;DP=477;ExcessHet=3.0103;FS=0.582;MLEAC=1;MLEAF=0.500;MQ=52.74;MQRankSum=-0.524;QD=5.17;ReadPosRankSum=0.374;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:338,138:0.29:476
chr17	18574998	rs9635701	A	T	2852.77	.	AC=1;AF=0.500;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	0/1:291,149:0.34:440
chr17	18575127	rs9635680	G	A	1650.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:181,55:0.23:236
chr17	18575140	rs9635681	A	G	1528.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:178,52:0.23:230
chr17	18575675	rs55797270	T	G	945.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.865;ClippingRankSum=0.000;DB;DP=263;ExcessHet=3.0103;FS=3.271;MLEAC=1;MLEAF=0.500;MQ=58.63;MQRankSum=-7.079;QD=3.68;ReadPosRankSum=2.160;SOR=0.933;set=HC	GT:AD:AF:DP	0/1:194,63:0.25:257
chr17	18576256	rs4924901	G	C	140.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.180;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=3.976;MLEAC=1;MLEAF=0.500;MQ=55.10;MQRankSum=-4.269;QD=6.12;ReadPosRankSum=1.304;SOR=1.008;set=HC	GT:AD:AF:DP	0/1:15,8:0.35:23
chr17	18602476	rs1969051	A	G	8318.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr17	18610134	rs1973459	T	G	3169.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;MQ=59.32;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr17	18630995	rs8075739	G	A	2352.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:167,118:0.41:285
chr17	18638151	rs9916065	A	G	1158.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.454;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=0.538;MLEAC=1;MLEAF=0.500;MQ=58.33;MQRankSum=1.163;QD=5.04;ReadPosRankSum=-1.864;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:161,69:0.30:230
chr17	18643642	rs150131079	T	C	100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.093;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=4.960;MLEAC=1;MLEAF=0.500;MQ=56.18;MQRankSum=-5.275;QD=1.46;ReadPosRankSum=0.019;SOR=1.568;set=HC	GT:AD:AF:DP	0/1:56,13:0.19:69
chr17	18647625	rs74502778	T	A	2159.77	.	AC=1;AF=0.500;AN=2;DB;DP=522;set=Intersection	GT:AD:AF:DP	0/1:380,142:0.27:522
chr17	18653070	rs9895749	G	A	1679.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.243;ClippingRankSum=0.000;DB;DP=429;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.01;MQRankSum=-0.281;QD=3.92;ReadPosRankSum=-0.078;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:319,109:0.25:428
chr17	18653145	rs200535885	C	G	57.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.356;ClippingRankSum=0.000;DB;DP=459;ExcessHet=3.0103;FS=0.804;MLEAC=1;MLEAF=0.500;MQ=48.52;MQRankSum=-3.340;QD=0.13;ReadPosRankSum=0.246;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:401,58:0.13:459
chr17	18670278	rs4611519	A	G	1037.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=52.31;QD=33.48;SOR=6.932;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr17	18671733	rs10775382	C	A	2125.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr17	18671961	rs144931466	C	T	2698.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:63,119:0.65:182
chr17	18678548	rs4630608	C	T	8066.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr17	18684487	rs59588820	A	G	310.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr17	18684642	rs75174617	G	T	916.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr17	18694277	rs61075345	G	A	7506.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr17	18700843	rs115776459	C	A	1234.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:154,78:0.34:232
chr17	18702094	rs2270139	A	G	1620.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:119,72:0.38:191
chr17	18702220	rs8080471	T	C	13541.77	.	AC=2;AF=1.00;AN=2;DB;DP=512;set=Intersection	GT:AD:AF:DP	1/1:0,507:1.00:507
chr17	18708830	rs55974180	G	GT	1642.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.876;ClippingRankSum=0.000;DB;DP=477;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.50;MQRankSum=-1.532;QD=3.81;ReadPosRankSum=-0.814;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:278,153:0.35:431
chr17	18708991	rs373765497	C	T	1045.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.643;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=1.981;MLEAC=1;MLEAF=0.500;MQ=42.94;MQRankSum=1.056;QD=15.16;ReadPosRankSum=-0.401;SOR=0.357;set=HC	GT:AD:AF:DP	0/1:29,40:0.58:69
chr17	18769349	rs2386404	T	C	1105.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr17	18770733	rs2305064	G	A	6760.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:1,242:1.00:243
chr17	18775867	rs80097258	C	T	1719.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:51,75:0.60:126
chr17	18775900	rs4393623	A	G	4758.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:2,182:0.99:184
chr17	18776020	rs7503678	A	T	3967.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:2,149:0.99:151
chr17	18780888	rs112755492	GT	G	631.73	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:21,35:0.62:56
chr17	18785823	.	T	TA	45.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.462;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.58;ReadPosRankSum=0.222;SOR=0.502;set=HC	GT:AD:AF:DP	0/1:21,8:0.28:29
chr17	18786099	rs79836654	G	A	184.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr17	18793061	rs3803835	C	T	4337.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr17	18793225	rs3826380	A	G	4716.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr17	18814661	rs55971101	T	TTA	2928.73	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr17	18833810	rs1634411	C	T	758.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:77,41:0.35:118
chr17	18834021	rs1801755	T	C	1160.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:27,50:0.65:77
chr17	18855611	rs2076562	T	C	2994.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:76,140:0.65:216
chr17	18872243	rs144485136	GTCTCCCCTCCTTAT	G	724.73	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:54,22:0.29:76
chr17	18872521	rs2074273	A	G	2787.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:86,127:0.60:213
chr17	18872581	rs2074272	C	T	2462.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:72,107:0.60:179
chr17	18874685	rs3071666	C	CGGT	4452.73	.	AC=1;AF=0.500;AN=2;DB;DP=201;MQ=60.16;set=Intersection	GT:AD:AF:DP	0/1:78,112:0.59:190
chr17	18874720	rs916823	C	G	3200.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:87,144:0.62:231
chr17	18882214	rs2074271	G	A	1999.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:26,76:0.75:102
chr17	18882991	rs2472714	T	A	2761.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr17	18916893	rs11652575	T	C	946.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr17	18918258	rs28526726	C	G	1475.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr17	18918510	.	A	ACGGTACGGGGGTGGGGGC	1278.73	.	AC=2;AF=1.00;AN=2;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr17	18923818	rs1624825	G	A	930.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr17	19213335	rs2296981	C	G	3439.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr17	19216917	rs3826405	T	C	10182.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	1/1:0,378:1.00:378
chr17	19231898	rs7206963	T	C	1908.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr17	19232078	rs6587220	T	C	12366.77	.	AC=2;AF=1.00;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	1/1:0,454:1.00:454
chr17	19233096	rs2296979	T	C	4156.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr17	19237613	rs11656071	C	T	690.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:58,34:0.37:92
chr17	19240972	rs11652712	G	A	3380.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr17	19247075	rs4924987	G	A	7045.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr17	19265797	rs10445411	C	T	1537.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.57;SOR=2.393;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr17	19314611	rs739830	T	C	5525.77	.	AC=1;AF=0.500;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	0/1:141,238:0.63:379
chr17	19314917	.	CTT	C	364.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.173;ClippingRankSum=0.000;DP=69;ExcessHet=3.0103;FS=1.211;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.79;ReadPosRankSum=1.020;SOR=1.000;set=HC	GT:AD:AF:DP	0/1:41,22:0.35:63
chr17	19318031	rs1295330	A	G	8186.77	.	AC=1;AF=0.500;AN=2;DB;DP=499;set=Intersection	GT:AD:AF:DP	0/1:140,350:0.71:490
chr17	19319015	rs1295329	C	T	3644.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:108,165:0.60:273
chr17	19437187	rs2252281	T	C	376.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:19,18:0.49:37
chr17	19445923	rs12451696	A	G	1102.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:19,48:0.72:67
chr17	19452711	rs2453572	TA	CG	546.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;JOINED;set=Intersection	GT:AD:AF:DP	0/1:27,15:0.36:42
chr17	19454575	rs2247518	A	C	299.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:31,15:0.33:46
chr17	19454725	rs2247437	G	C	2483.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.345;ClippingRankSum=0.000;DB;DP=221;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.50;ReadPosRankSum=-0.245;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:143,73:0.34:216
chr17	19454733	rs2247436	G	A	2397.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.419;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.36;ReadPosRankSum=0.813;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:142,69:0.33:211
chr17	19458777	rs2440149	G	C	1379.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr17	19460972	rs1054715	G	A	414.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:33,22:0.40:55
chr17	19476588	rs2250486	T	C	755.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:109,49:0.31:158
chr17	19480593	rs35672252	G	GA	686.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.898;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=1.984;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.38;ReadPosRankSum=-0.574;SOR=0.545;set=HC	GT:AD:AF:DP	0/1:145,58:0.29:203
chr17	19561011	rs3841513	GACTGAATT	G	2955.73	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:191,87:0.31:278
chr17	19564634	rs1800869	C	G	1416.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:132,74:0.36:206
chr17	19568486	rs59755039	CT	C	369.73	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:47,21:0.31:68
chr17	19576291	rs71369434	T	C	439.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:33,14:0.30:47
chr17	19578873	rs7216	A	T	2452.77	.	AC=1;AF=0.500;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	0/1:207,132:0.39:339
chr17	19595585	rs12602112	C	T	269.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.206;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.50;ReadPosRankSum=-0.339;SOR=0.809;set=HC	GT:AD:AF:DP	0/1:42,18:0.30:60
chr17	19608910	rs34629869	CT	C	241.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.241;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.62;ReadPosRankSum=-1.880;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:22,21:0.49:43
chr17	19609947	rs12942065	C	G	2253.77	.	AC=1;AF=0.500;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	0/1:253,121:0.32:374
chr17	19642268	rs4646791	T	TG	1393.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.687;ClippingRankSum=0.000;DB;DP=221;ExcessHet=3.0103;FS=2.777;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.57;ReadPosRankSum=0.922;SOR=0.487;set=HC	GT:AD:AF:DP	0/1:149,63:0.30:212
chr17	19643810	rs3826507	G	A	2912.77	.	AC=1;AF=0.500;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	0/1:236,153:0.39:389
chr17	19644226	rs3786036	C	G	180.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:25,10:0.29:35
chr17	19644472	rs2072330	A	T	732.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:88,43:0.33:131
chr17	19645938	rs887241	A	C	2328.77	.	AC=1;AF=0.500;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	0/1:289,136:0.32:425
chr17	19646750	rs59102760	C	T	6720.77	.	AC=1;AF=0.500;AN=2;DB;DP=506;set=Intersection	GT:AD:AF:DP	0/1:190,309:0.62:499
chr17	19648219	rs56234923	T	C	203.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.38;SOR=4.804;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr17	19699358	rs192511	T	C	4247.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr17	19699605	rs10587010	CAT	C	1886.73	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:8,61:0.88:69
chr17	19702892	.	C	CAA	121.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.014;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=4.531;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.90;ReadPosRankSum=-0.655;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:22,20:0.48:42
chr17	19713740	rs150122	C	T	10124.77	.	AC=2;AF=1.00;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	1/1:0,393:1.00:393
chr17	19729306	.	A	AAAATAAAT	666	.	AC=2;AF=1.00;AN=2;BRF=0.38;FR=1.0000;HP=17;HapScore=2;MGOF=27;MMLQ=26;MQ=57.91;NF=1;NR=4;PP=666;QD=133.8;SC=TCTCAAAAAAAAAAAAAAAAA;SbPval=0.75;Source=Platypus;TC=8;TCF=2;TCR=6;TR=5;WE=19729322;WS=19729305;set=Platypus	GT:AD:AF:DP	1/1:3,5:0.62:8
chr17	19729309	.	A	AT	250.87	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.070;ClippingRankSum=-0.000;DP=15;ExcessHet=3.0103;FS=3.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=27.87;ReadPosRankSum=0.431;SOR=0.515;set=HC	GT:AD:AF:DP	0/1:2,7:0.78:9
chr17	19729312	rs60573446	A	AT	250.87	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.200;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=3.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=27.87;ReadPosRankSum=-0.105;SOR=0.515;set=HC	GT:AD:AF:DP	0/1:2,7:0.78:9
chr17	19729314	.	A	AATAAAT	466.73	.	AC=2;AF=1.00;AN=2;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=51.86;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr17	19729495	rs157397	T	C	3239.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:0,126:1.00:126
chr17	19749952	rs140413803	CA	C	268.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.580;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=10.293;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=2.406;QD=2.56;ReadPosRankSum=-0.903;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:67,38:0.36:105
chr17	19999781	rs12942179	G	A	722.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:17,31:0.65:48
chr17	20000131	rs4925085	G	T	2497.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:36,107:0.75:143
chr17	20059591	rs3833861	A	AC	2380.73	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:67,97:0.59:164
chr17	20107773	rs2703805	T	C	2805.77	.	AC=1;AF=0.500;AN=2;DB;DP=480;set=Intersection	GT:AD:AF:DP	0/1:318,155:0.33:473
chr17	20108239	rs2703806	A	T	1063.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.130;ClippingRankSum=0.000;DB;DP=268;ExcessHet=3.0103;FS=1.103;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.06;ReadPosRankSum=-0.621;SOR=0.806;set=HC	GT:AD:AF:DP	0/1:195,67:0.26:262
chr17	20109189	rs2703807	C	T	286.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:44,19:0.30:63
chr17	20139968	.	CT	C	139.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.733;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.58;ReadPosRankSum=-0.982;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:20,19:0.49:39
chr17	20163529	rs2703791	A	G	4169.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr17	20209474	rs2120282	C	T	2633.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr17	20254234	.	G	GT	93.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.184;ClippingRankSum=0.000;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.51;MQRankSum=-2.886;QD=0.60;ReadPosRankSum=0.483;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:128,28:0.18:156
chr17	20254786	rs199507996	T	C	204.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=38.99;QD=25.60;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr17	20261101	rs111285254	A	G	5106.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr17	20356536	rs200986076	A	G	458.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:44,25:0.36:69
chr17	20361493	rs201762600	T	C	536.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.067;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=2.955;MLEAC=1;MLEAF=0.500;MQ=46.96;MQRankSum=-4.471;QD=4.55;ReadPosRankSum=0.969;SOR=0.405;set=HC	GT:AD:AF:DP	0/1:87,31:0.26:118
chr17	20435927	rs200997592	C	G	108.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=27.01;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr17	20436054	.	G	GAGA	1355.73	.	AC=2;AF=1.00;AN=2;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.75;QD=52.14;SOR=2.670;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr17	20436208	rs369719011	G	A	1190.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.35;QD=26.46;SOR=1.038;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr17	20459595	rs57570943	A	G	114.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.786;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.80;MQRankSum=-5.695;QD=1.55;ReadPosRankSum=1.217;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:60,14:0.19:74
chr17	20493411	.	GG	CA	4028.77	.	AC=1;AF=0.500;AN=2;DP=234;JOINED;set=Intersection	GT:AD:AF:DP	0/1:126,105:0.45:231
chr17	20768788	rs78365129	G	T	276.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.450;ClippingRankSum=0.000;DB;DP=470;ExcessHet=3.0103;FS=1.064;MLEAC=1;MLEAF=0.500;MQ=58.52;MQRankSum=-15.031;QD=0.60;ReadPosRankSum=-4.577;SOR=0.985;set=HC	GT:AD:AF:DP	0/1:427,35:0.08:462
chr17	20768803	rs76135364	C	T	404.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.284;ClippingRankSum=0.000;DB;DP=454;ExcessHet=3.0103;FS=0.960;MLEAC=1;MLEAF=0.500;MQ=58.28;MQRankSum=-13.323;QD=0.91;ReadPosRankSum=-3.471;SOR=0.849;set=HC	GT:AD:AF:DP	0/1:406,40:0.09:446
chr17	20768816	rs73298040	C	T	588.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.958;ClippingRankSum=0.000;DB;DP=424;ExcessHet=3.0103;FS=0.888;MLEAC=1;MLEAF=0.500;MQ=58.16;MQRankSum=-12.845;QD=1.41;ReadPosRankSum=-2.347;SOR=0.603;set=HC	GT:AD:AF:DP	0/1:375,43:0.10:418
chr17	20768850	rs114103783	G	T	248.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.061;ClippingRankSum=0.000;DB;DP=303;ExcessHet=3.0103;FS=2.631;MLEAC=1;MLEAF=0.500;MQ=58.18;MQRankSum=-10.848;QD=0.83;ReadPosRankSum=5.608;SOR=0.449;set=HC	GT:AD:AF:DP	0/1:270,28:0.09:298
chr17	20768867	rs9906896	A	C	856.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.925;ClippingRankSum=0.000;DB;DP=224;ExcessHet=3.0103;FS=3.335;MLEAC=1;MLEAF=0.500;MQ=57.55;MQRankSum=-13.517;QD=3.88;ReadPosRankSum=4.450;SOR=0.424;set=HC	GT:AD:AF:DP	0/1:183,38:0.17:221
chr17	20768928	rs141057464	AAT	A	446.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.384;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=7.237;MLEAC=1;MLEAF=0.500;MQ=56.34;MQRankSum=-7.466;QD=6.12;ReadPosRankSum=0.118;SOR=2.419;set=HC	GT:AD:AF:DP	0/1:58,15:0.21:73
chr17	20768931	rs76382049	A	G	458.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.277;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=7.283;MLEAC=1;MLEAF=0.500;MQ=56.34;MQRankSum=-7.743;QD=6.28;ReadPosRankSum=1.513;SOR=2.338;set=HC	GT:AD:AF:DP	0/1:57,16:0.22:73
chr17	20906251	rs4985956	C	T	638.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.321;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.03;ReadPosRankSum=-0.512;SOR=1.101;set=HC	GT:AD:AF:DP	0/1:12,17:0.59:29
chr17	20906257	rs4985957	A	G	698.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.399;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.84;ReadPosRankSum=-0.896;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:12,20:0.62:32
chr17	20906266	rs11430423	A	AG	406.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.753;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=1.648;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.30;ReadPosRankSum=0.095;SOR=1.195;set=HC	GT:AD:AF:DP	0/1:17,19:0.53:36
chr17	20908325	rs9797279	T	C	2466.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:72,109:0.60:181
chr17	20914635	rs2291035	G	A	4075.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:91,175:0.66:266
chr17	20916035	rs4985962	A	G	1732.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:40,80:0.67:120
chr17	20919334	rs7213684	T	G	506.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.401;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.34;ReadPosRankSum=0.316;SOR=1.127;set=HC	GT:AD:AF:DP	0/1:6,14:0.70:20
chr17	20919337	rs7207753	G	C	506.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.255;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.15;ReadPosRankSum=1.012;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:6,12:0.67:18
chr17	20921492	rs1038107	C	T	904.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:17,38:0.69:55
chr17	20922268	rs984007	G	A	984.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:13,39:0.75:52
chr17	20924523	rs2291037	G	A	4243.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:116,193:0.62:309
chr17	20924620	rs899342	T	C	1530.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:45,72:0.62:117
chr17	20945887	rs4985967	G	A	1823.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:29,68:0.70:97
chr17	20946393	rs140762989	T	C	202.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr17	21117837	rs4985988	T	C	129.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:19,9:0.32:28
chr17	21147404	rs897926	A	G	955.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:123,57:0.32:180
chr17	21156530	rs201190568	G	GC	2128.73	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr17	21194658	rs71160134	T	TACAACACAACACAAC	2131.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.986;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=2.094;MLEAC=1;MLEAF=0.500;MQ=60.57;MQRankSum=4.833;QD=12.54;ReadPosRankSum=0.186;SOR=0.896;set=HC	GT:AD:AF:DP	0/1:117,53:0.31:170
chr17	21194769	rs72840055	C	T	3378.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.926;ClippingRankSum=0.000;DB;DP=345;ExcessHet=3.0103;FS=19.487;MLEAC=1;MLEAF=0.500;MQ=60.41;MQRankSum=-2.351;QD=9.94;ReadPosRankSum=2.581;SOR=1.513;set=HC	GT:AD:AF:DP	0/1:241,99:0.29:340
chr17	21194769	.	CGA	TGT	2944	.	AC=1;AF=0.500;AN=2;BRF=0.57;FR=0.5000;HP=1;HapScore=1;MGOF=28;MMLQ=23;MQ=60.36;NF=33;NR=31;PP=2944;QD=20;SC=ACTGGCCTGTCGACAGTGCAG;SbPval=0.37;Source=Platypus;TC=222;TCF=104;TCR=118;TR=64;WE=21194793;WS=21194759;set=Platypus	GT:AD:AF:DP	0/1:158,64:0.29:222
chr17	21194771	rs114473529	A	T	3444.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.474;ClippingRankSum=0.000;DB;DP=339;ExcessHet=3.0103;FS=19.612;MLEAC=1;MLEAF=0.500;MQ=60.41;MQRankSum=-2.359;QD=10.28;ReadPosRankSum=2.822;SOR=1.514;set=HC	GT:AD:AF:DP	0/1:237,98:0.29:335
chr17	21194785	rs72840057	T	C	3469.77	.	AC=1;AF=0.500;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	0/1:226,99:0.30:325
chr17	21194820	rs66503560	G	A	3446.77	.	AC=1;AF=0.500;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:220,99:0.31:319
chr17	21194843	rs75693966	T	C	3244.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.806;ClippingRankSum=0.000;DB;DP=280;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.67;ReadPosRankSum=-1.640;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:189,89:0.32:278
chr17	21194852	rs72840058	G	A	2826.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.942;ClippingRankSum=0.000;DB;DP=255;ExcessHet=3.0103;FS=3.968;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.17;ReadPosRankSum=-1.354;SOR=0.954;set=HC	GT:AD:AF:DP	0/1:178,75:0.30:253
chr17	21194859	rs62056394	G	A	2545.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.109;ClippingRankSum=0.000;DB;DP=247;ExcessHet=3.0103;FS=4.049;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.39;ReadPosRankSum=-1.897;SOR=0.966;set=HC	GT:AD:AF:DP	0/1:171,74:0.30:245
chr17	21198972	rs2363221	T	C	4128.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.420;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=0.636;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.18;ReadPosRankSum=1.367;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:60,104:0.63:164
chr17	21198978	rs2363220	C	T	3006.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.047;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=2.004;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.89;ReadPosRankSum=0.681;SOR=0.882;set=HC	GT:AD:AF:DP	0/1:71,107:0.60:178
chr17	21199037	rs2885719	G	A	5219.77	.	AC=1;AF=0.500;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	0/1:166,229:0.58:395
chr17	21199105	rs71291780	AGG	A	5434.73	.	AC=1;AF=0.500;AN=2;DB;DP=523;set=Intersection	GT:AD:AF:DP	0/1:236,179:0.43:415
chr17	21199236	rs2363219	C	T	1888.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:92,81:0.47:173
chr17	21199275	rs2363218	G	T	2308.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.691;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=1.369;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.000;QD=16.03;ReadPosRankSum=1.055;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:83,61:0.42:144
chr17	21199275	.	GTG	TTA	2189	.	AC=1;AF=0.500;AN=2;BRF=0.27;FR=0.5000;HP=2;HapScore=1;MGOF=16;MMLQ=27;MQ=59.97;NF=18;NR=33;PP=2189;QD=43.9699583306;SC=CAGGGTCTCTGTGCAGAGCTT;SbPval=0.58;Source=Platypus;TC=131;TCF=47;TCR=84;TR=51;WE=21199285;WS=21199265;set=Platypus	GT:AD:AF:DP	0/1:80,51:0.39:131
chr17	21199277	rs2363217	G	A	2308.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.637;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=1.378;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.000;QD=16.15;ReadPosRankSum=0.400;SOR=0.869;set=HC	GT:AD:AF:DP	0/1:81,62:0.43:143
chr17	21199376	rs5819736	G	GT	1605.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.543;ClippingRankSum=0.000;DB;DP=211;ExcessHet=3.0103;FS=6.235;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.033;QD=8.07;ReadPosRankSum=1.629;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:95,104:0.52:199
chr17	21199390	rs4997717	C	T	1966.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.598;ClippingRankSum=0.000;DB;DP=215;ExcessHet=3.0103;FS=1.062;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=-0.927;QD=9.28;ReadPosRankSum=3.208;SOR=0.600;set=HC	GT:AD:AF:DP	0/1:113,99:0.47:212
chr17	21199403	rs4997718	C	T	1885.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.307;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=-0.915;QD=9.24;ReadPosRankSum=3.656;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:110,94:0.46:204
chr17	21199499	rs2885718	G	A	769.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:40,34:0.46:74
chr17	21199515	rs5025581	C	T	129.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.188;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.36;ReadPosRankSum=0.293;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:45,10:0.18:55
chr17	21201579	rs11651154	C	T	258.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.921;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=1.592;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.04;ReadPosRankSum=0.866;SOR=1.120;set=HC	GT:AD:AF:DP	0/1:106,21:0.17:127
chr17	21201719	rs8076154	T	C	10487.77	.	AC=1;AF=0.500;AN=2;DB;DP=1044;set=Intersection	GT:AD:AF:DP	0/1:526,499:0.49:1025
chr17	21201851	rs8072386	A	G	7616.77	.	AC=1;AF=0.500;AN=2;DB;DP=837;set=Intersection	GT:AD:AF:DP	0/1:453,366:0.45:819
chr17	21201884	rs2305875	T	C	2137.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.985;ClippingRankSum=0.000;DB;DP=529;ExcessHet=3.0103;FS=2.513;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.07;ReadPosRankSum=-0.123;SOR=0.414;set=HC	GT:AD:AF:DP	0/1:425,100:0.19:525
chr17	21201890	rs8072401	A	G	7526.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.542;ClippingRankSum=0.000;DB;DP=469;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.12;ReadPosRankSum=1.082;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:267,200:0.43:467
chr17	21201894	rs8071865	C	T	7444.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.561;ClippingRankSum=0.000;DB;DP=444;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.84;ReadPosRankSum=1.317;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:252,190:0.43:442
chr17	21201907	rs2305874	G	A	1952.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.387;ClippingRankSum=0.000;DB;DP=342;ExcessHet=3.0103;FS=1.980;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.74;ReadPosRankSum=-0.866;SOR=0.521;set=HC	GT:AD:AF:DP	0/1:274,66:0.19:340
chr17	21202056	rs34676150	G	A	3923.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.977;ClippingRankSum=0.000;DB;DP=263;ExcessHet=3.0103;FS=1.109;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.98;ReadPosRankSum=-0.175;SOR=0.791;set=HC	GT:AD:AF:DP	0/1:157,105:0.40:262
chr17	21202063	rs77850849	G	C	4681.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.989;ClippingRankSum=0.000;DB;DP=304;ExcessHet=3.0103;FS=0.485;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.50;ReadPosRankSum=0.135;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:183,119:0.39:302
chr17	21202067	rs76764437	A	G	4963.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.573;ClippingRankSum=0.000;DB;DP=329;ExcessHet=3.0103;FS=1.550;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.27;ReadPosRankSum=0.348;SOR=0.816;set=HC	GT:AD:AF:DP	0/1:197,128:0.39:325
chr17	21202078	rs35477472	G	A	6017.77	.	AC=1;AF=0.500;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	0/1:219,155:0.41:374
chr17	21202102	rs35701021	C	T	7829.77	.	AC=1;AF=0.500;AN=2;DB;DP=539;set=Intersection	GT:AD:AF:DP	0/1:312,216:0.41:528
chr17	21202123	rs68151103	A	G	3378.77	.	AC=1;AF=0.500;AN=2;DB;DP=730;set=Intersection	GT:AD:AF:DP	0/1:498,213:0.30:711
chr17	21202191	rs33911218	C	A	11841.77	.	AC=1;AF=0.500;AN=2;DB;DP=1465;set=Intersection	GT:AD:AF:DP	0/1:844,612:0.42:1456
chr17	21202237	rs36047035	G	C	13529.77	.	AC=1;AF=0.500;AN=2;DB;DP=1536;MQ=60.01;set=Intersection	GT:AD:AF:DP	0/1:857,673:0.44:1530
chr17	21202272	rs34880480	C	G	11073.77	.	AC=1;AF=0.500;AN=2;DB;DP=1214;MQ=60.02;set=Intersection	GT:AD:AF:DP	0/1:667,542:0.45:1209
chr17	21202310	rs77343934	GC	AT	12513.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.092;ClippingRankSum=0.000;DB;DP=733;ExcessHet=3.0103;FS=2.546;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=1.582;QD=17.14;ReadPosRankSum=0.982;SOR=0.530;set=HC	GT:AD:AF:DP	0/1:405,325:0.45:730
chr17	21202316	rs78463537	T	C	12142.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.600;ClippingRankSum=0.000;DB;DP=675;ExcessHet=3.0103;FS=2.579;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=1.554;QD=18.02;ReadPosRankSum=0.024;SOR=0.516;set=HC	GT:AD:AF:DP	0/1:368,306:0.45:674
chr17	21202318	rs77591777	G	T	11714.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.073;ClippingRankSum=0.000;DB;DP=654;ExcessHet=3.0103;FS=2.579;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=1.547;QD=17.94;ReadPosRankSum=-0.225;SOR=0.522;set=HC	GT:AD:AF:DP	0/1:355,298:0.46:653
chr17	21202370	rs34794731	G	A	4271.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:143,120:0.46:263
chr17	21202382	rs35763451	TG	T	3937.73	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:114,103:0.47:217
chr17	21203711	rs73311537	C	T	435.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:35,18:0.34:53
chr17	21203820	rs78304829	G	C	3851.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.832;ClippingRankSum=0.000;DB;DP=272;ExcessHet=3.0103;FS=0.957;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.16;ReadPosRankSum=-1.745;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:168,104:0.38:272
chr17	21203825	rs75854955	C	G	3940.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.323;ClippingRankSum=0.000;DB;DP=290;ExcessHet=3.0103;FS=0.931;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.59;ReadPosRankSum=-1.410;SOR=0.778;set=HC	GT:AD:AF:DP	0/1:180,110:0.38:290
chr17	21203893	rs34105301	T	C	3599.77	.	AC=1;AF=0.500;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	0/1:242,154:0.39:396
chr17	21203907	rs73311539	T	C	1322.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.860;ClippingRankSum=0.000;DB;DP=361;ExcessHet=3.0103;FS=0.915;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.67;ReadPosRankSum=-0.290;SOR=0.759;set=HC	GT:AD:AF:DP	0/1:267,93:0.26:360
chr17	21203934	rs62057672	G	A	3537.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.339;ClippingRankSum=0.000;DB;DP=294;ExcessHet=3.0103;FS=2.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.07;ReadPosRankSum=-0.914;SOR=0.540;set=HC	GT:AD:AF:DP	0/1:187,106:0.36:293
chr17	21203941	rs2305873	G	A	1682.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.086;ClippingRankSum=0.000;DB;DP=273;ExcessHet=3.0103;FS=1.750;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.19;ReadPosRankSum=-0.265;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:208,64:0.24:272
chr17	21203949	rs62057673	C	T	2842.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.012;ClippingRankSum=0.000;DB;DP=253;ExcessHet=3.0103;FS=1.623;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.28;ReadPosRankSum=0.166;SOR=0.585;set=HC	GT:AD:AF:DP	0/1:167,85:0.34:252
chr17	21203964	rs34458870	C	G	929.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.723;ClippingRankSum=0.000;DB;DP=217;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.30;ReadPosRankSum=-0.925;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:164,52:0.24:216
chr17	21203998	rs62057674	G	A	1046.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:92,48:0.34:140
chr17	21204153	rs66883103	C	T	2920.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:165,132:0.44:297
chr17	21204187	rs56067280	G	T	7809.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.080;ClippingRankSum=0.000;DB;DP=529;ExcessHet=3.0103;FS=1.171;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.79;ReadPosRankSum=2.400;SOR=0.785;set=HC	GT:AD:AF:DP	0/1:320,208:0.39:528
chr17	21204192	rs56216806	C	T	8153.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.446;ClippingRankSum=0.000;DB;DP=557;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.67;ReadPosRankSum=1.186;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:331,225:0.40:556
chr17	21204210	rs55796947	C	T	6345.77	.	AC=1;AF=0.500;AN=2;DB;DP=690;set=Intersection	GT:AD:AF:DP	0/1:408,282:0.41:690
chr17	21204257	rs56166328	G	A	7866.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.953;ClippingRankSum=0.000;DB;DP=941;ExcessHet=3.0103;FS=1.106;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.37;ReadPosRankSum=0.222;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:546,394:0.42:940
chr17	21204266	rs2230435	T	C	19928.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.157;ClippingRankSum=0.000;DB;DP=981;ExcessHet=3.0103;FS=0.526;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.31;ReadPosRankSum=-0.222;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:401,580:0.59:981
chr17	21204290	rs2305872	G	C	3745.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.832;ClippingRankSum=0.000;DB;DP=1015;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.69;ReadPosRankSum=-1.399;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:759,256:0.25:1015
chr17	21204308	rs55777930	G	T	16436.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.060;ClippingRankSum=0.000;DB;DP=996;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.50;ReadPosRankSum=-0.367;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:561,435:0.44:996
chr17	21204314	.	TTG	T	1490.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.451;ClippingRankSum=0.000;DP=984;ExcessHet=3.0103;FS=0.731;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.54;ReadPosRankSum=2.273;SOR=0.833;set=HC	GT:AD:AF:DP	0/1:808,158:0.16:966
chr17	21204315	rs77379486	T	C	3758.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.297;ClippingRankSum=0.000;DB;DP=958;ExcessHet=3.0103;FS=1.273;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.94;ReadPosRankSum=-0.497;SOR=0.617;set=HC	GT:AD:AF:DP	0/1:705,248:0.26:953
chr17	21204318	rs74869330	A	G	11284.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.764;ClippingRankSum=0.000;DB;DP=949;ExcessHet=3.0103;FS=0.569;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.92;ReadPosRankSum=0.850;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:542,405:0.43:947
chr17	21204428	rs36191822	G	T	531.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.164;ClippingRankSum=0.000;DB;DP=405;ExcessHet=3.0103;FS=1.825;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.35;ReadPosRankSum=0.028;SOR=0.840;set=HC	GT:AD:AF:DP	0/1:333,61:0.15:394
chr17	21204437	rs76549047	T	C	5732.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.164;ClippingRankSum=0.000;DB;DP=336;ExcessHet=3.0103;FS=1.426;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.37;ReadPosRankSum=0.259;SOR=0.809;set=HC	GT:AD:AF:DP	0/1:178,152:0.46:330
chr17	21204441	rs78162711	T	C	5685.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.490;ClippingRankSum=0.000;DB;DP=320;ExcessHet=3.0103;FS=2.667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.11;ReadPosRankSum=0.074;SOR=0.860;set=HC	GT:AD:AF:DP	0/1:168,146:0.46:314
chr17	21205352	rs66761201	CGGA	C	2143.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.448;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=0.786;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=2.697;QD=13.32;ReadPosRankSum=0.217;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:103,58:0.36:161
chr17	21205354	.	GA	AG	2921	.	AC=1;AF=0.500;AN=2;BRF=0.43;FR=0.5000;HP=1;HapScore=2;MGOF=33;MMLQ=23;MQ=60.03;NF=35;NR=8;PP=2921;QD=20;SC=GCACACGTCGGAGAGGGGGCT;SbPval=0.9;Source=Platypus;TC=128;TCF=92;TCR=36;TR=43;WE=21205371;WS=21205344;set=Platypus	GT:AD:AF:DP	1/0:85,43:0.34:128
chr17	21205358	.	GGGGGCT	G	2980	.	AC=1;AF=0.500;AN=2;BRF=0.43;FR=0.5000;HP=4;HapScore=2;MGOF=33;MMLQ=23;MQ=60.11;NF=20;NR=14;PP=2980;QD=20;SC=ACGTCGGAGAGGGGGCTGGGG;SbPval=0.59;Source=Platypus;TC=112;TCF=65;TCR=47;TR=34;WE=21205371;WS=21205344;set=Platypus	GT:AD:AF:DP	1/0:78,34:0.30:112
chr17	21205360	rs74998514	G	A	2320.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.969;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=6.007;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=2.675;QD=13.19;ReadPosRankSum=0.340;SOR=1.226;set=HC	GT:AD:AF:DP	0/1:112,64:0.36:176
chr17	21205361	rs67557217	GGCT	G	2311.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=4.587;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=4.607;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=3.026;QD=12.77;ReadPosRankSum=0.298;SOR=1.173;set=HC	GT:AD:AF:DP	0/1:116,65:0.36:181
chr17	21205396	rs75974715	C	A	3941.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.242;ClippingRankSum=0.000;DB;DP=269;ExcessHet=3.0103;FS=1.616;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.286;QD=14.99;ReadPosRankSum=-0.707;SOR=0.812;set=HC	GT:AD:AF:DP	0/1:157,106:0.40:263
chr17	21205406	rs72831582	A	G	4132.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.293;ClippingRankSum=0.000;DB;DP=291;ExcessHet=3.0103;FS=0.457;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.258;QD=14.55;ReadPosRankSum=-0.537;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:167,117:0.41:284
chr17	21205460	rs62057721	C	T	3976.77	.	AC=1;AF=0.500;AN=2;DB;DP=484;set=Intersection	GT:AD:AF:DP	0/1:269,202:0.43:471
chr17	21205592	rs66644302	GGC	G	104.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.925;ClippingRankSum=0.000;DB;DP=225;ExcessHet=3.0103;FS=61.614;MLEAC=1;MLEAF=0.500;MQ=60.34;MQRankSum=0.000;QD=0.52;ReadPosRankSum=-1.074;SOR=4.081;set=HC	GT:AD:AF:DP	0/1:176,24:0.12:200
chr17	21205604	rs62057722	T	C	640.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.361;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=38.266;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.58;ReadPosRankSum=-3.227;SOR=2.152;set=HC	GT:AD:AF:DP	0/1:150,29:0.16:179
chr17	21205606	rs2305871	G	C	853.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.520;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=5.087;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.02;ReadPosRankSum=1.845;SOR=1.125;set=HC	GT:AD:AF:DP	0/1:119,51:0.30:170
chr17	21205642	rs62057723	T	G	282.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:95,15:0.14:110
chr17	21205654	rs72831585	AT	GA	270.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;JOINED;set=Intersection	GT:AD:AF:DP	0/1:78,13:0.14:91
chr17	21206269	rs73982750	G	A	1162.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:41,31:0.43:72
chr17	21206294	rs73311581	C	T	1796.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:60,59:0.50:119
chr17	21206360	rs67280439	A	G	6157.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.254;ClippingRankSum=0.000;DB;DP=324;ExcessHet=3.0103;FS=3.068;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.06;ReadPosRankSum=-0.504;SOR=0.887;set=HC	GT:AD:AF:DP	0/1:168,155:0.48:323
chr17	21206372	rs72838545	G	C	7150.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.853;ClippingRankSum=0.000;DB;DP=381;ExcessHet=3.0103;FS=1.706;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.82;ReadPosRankSum=-0.456;SOR=0.803;set=HC	GT:AD:AF:DP	0/1:199,181:0.48:380
chr17	21206385	rs72838547	C	T	7523.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.184;ClippingRankSum=0.000;DB;DP=453;ExcessHet=3.0103;FS=1.111;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.68;ReadPosRankSum=0.185;SOR=0.803;set=HC	GT:AD:AF:DP	0/1:240,211:0.47:451
chr17	21206444	rs62057728	A	G	6814.77	.	AC=1;AF=0.500;AN=2;DB;DP=708;set=Intersection	GT:AD:AF:DP	0/1:376,329:0.47:705
chr17	21206556	rs736103	C	T	5904.77	.	AC=1;AF=0.500;AN=2;DB;DP=485;set=Intersection	GT:AD:AF:DP	0/1:190,284:0.60:474
chr17	21206616	rs57761454	G	A	2013.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:114,88:0.44:202
chr17	21206632	rs35678520	C	T	291.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.240;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=8.944;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.93;ReadPosRankSum=1.522;SOR=2.470;set=HC	GT:AD:AF:DP	0/1:127,24:0.16:151
chr17	21206635	rs77285979	T	A	2234.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.648;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=8.125;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.52;ReadPosRankSum=0.494;SOR=1.876;set=HC	GT:AD:AF:DP	0/1:84,60:0.42:144
chr17	21206642	rs59259996	G	A	2138.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.051;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=11.335;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.39;ReadPosRankSum=-0.849;SOR=2.609;set=HC	GT:AD:AF:DP	0/1:68,55:0.45:123
chr17	21206654	rs56821097	G	T	1061.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:59,42:0.42:101
chr17	21207602	rs55677712	C	G	1557.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:46,46:0.50:92
chr17	21207649	rs56342308	C	T	1937.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:88,89:0.50:177
chr17	21207813	rs74575904	T	G	58.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.196;ClippingRankSum=0.000;DB;DP=825;ExcessHet=3.0103;FS=6.277;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.07;ReadPosRankSum=1.901;SOR=1.222;set=HC	GT:AD:AF:DP	0/1:710,81:0.10:791
chr17	21207834	rs58609466	C	T	3335.77	.	AC=1;AF=0.500;AN=2;DB;DP=746;set=Intersection	GT:AD:AF:DP	0/1:504,208:0.29:712
chr17	21207835	rs76111309	G	A	1760.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.499;ClippingRankSum=0.000;DB;DP=742;ExcessHet=3.0103;FS=4.064;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.49;ReadPosRankSum=1.133;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:613,95:0.13:708
chr17	21207844	rs2230436	C	T	412.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.533;ClippingRankSum=0.000;DB;DP=708;ExcessHet=3.0103;FS=1.676;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.62;ReadPosRankSum=2.589;SOR=0.881;set=HC	GT:AD:AF:DP	0/1:578,93:0.14:671
chr17	21207909	rs41301807	G	A	819.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.958;ClippingRankSum=0.000;DB;DP=302;ExcessHet=3.0103;FS=3.547;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.93;ReadPosRankSum=0.378;SOR=0.476;set=HC	GT:AD:AF:DP	0/1:218,62:0.22:280
chr17	21207916	rs7209761	A	G	5759.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.086;ClippingRankSum=0.000;DB;DP=267;ExcessHet=3.0103;FS=4.957;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.22;ReadPosRankSum=-0.678;SOR=0.394;set=HC	GT:AD:AF:DP	0/1:62,186:0.75:248
chr17	21207938	rs75147012	C	T	904.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.085;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=7.890;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.26;ReadPosRankSum=0.274;SOR=0.226;set=HC	GT:AD:AF:DP	0/1:127,45:0.26:172
chr17	21207939	rs41309278	G	T	1870.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.902;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=1.691;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.20;ReadPosRankSum=0.323;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:104,63:0.38:167
chr17	21207945	rs9896440	A	G	3918.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.625;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=5.856;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.96;ReadPosRankSum=0.120;SOR=0.299;set=HC	GT:AD:AF:DP	0/1:53,104:0.66:157
chr17	21208292	rs7214432	T	C	1523.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:205,84:0.29:289
chr17	21208317	rs4456559	G	A	6055.77	.	AC=1;AF=0.500;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	0/1:168,214:0.56:382
chr17	21208347	rs4559960	C	A	959.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.895;ClippingRankSum=0.000;DB;DP=548;ExcessHet=3.0103;FS=2.340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.88;ReadPosRankSum=0.533;SOR=0.947;set=HC	GT:AD:AF:DP	0/1:415,95:0.19:510
chr17	21208349	rs7209860	C	G	3750.77	.	AC=1;AF=0.500;AN=2;DB;DP=552;set=Intersection	GT:AD:AF:DP	0/1:355,193:0.35:548
chr17	21208413	rs1657695	C	T	1028.77	.	AC=1;AF=0.500;AN=2;DB;DP=657;set=Intersection	GT:AD:AF:DP	0/1:494,117:0.19:611
chr17	21208449	rs1657694	G	T	4362.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.924;ClippingRankSum=0.000;DB;DP=514;ExcessHet=3.0103;FS=1.225;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.66;ReadPosRankSum=1.753;SOR=0.808;set=HC	GT:AD:AF:DP	0/1:357,147:0.29:504
chr17	21208456	rs1657693	A	G	4414.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.574;ClippingRankSum=0.000;DB;DP=479;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.35;ReadPosRankSum=2.051;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:332,140:0.30:472
chr17	21208640	rs7209152	G	A	180.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:28,11:0.28:39
chr17	21215424	rs35026048	G	A	439.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.024;ClippingRankSum=0.000;DB;DP=225;ExcessHet=3.0103;FS=2.442;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.96;ReadPosRankSum=0.541;SOR=0.482;set=HC	GT:AD:AF:DP	0/1:181,43:0.19:224
chr17	21215434	rs113634008	A	AC	3128.73	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:143,107:0.43:250
chr17	21215446	rs62055363	C	T	3379.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:171,126:0.42:297
chr17	21215483	rs55935757	C	T	4053.77	.	AC=1;AF=0.500;AN=2;DB;DP=510;set=Intersection	GT:AD:AF:DP	0/1:303,205:0.40:508
chr17	21215537	rs55736474	C	A	7486.77	.	AC=1;AF=0.500;AN=2;DB;DP=948;set=Intersection	GT:AD:AF:DP	0/1:561,384:0.41:945
chr17	21215552	rs56369732	C	T	16084.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.314;ClippingRankSum=0.000;DB;DP=1022;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.77;ReadPosRankSum=0.591;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:595,425:0.42:1020
chr17	21215557	rs35206134	G	A	16242.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.011;ClippingRankSum=0.000;DB;DP=1077;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.11;ReadPosRankSum=1.103;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:627,448:0.42:1075
chr17	21215637	rs66486636	G	A	12492.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.317;ClippingRankSum=0.000;DB;DP=806;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.60;ReadPosRankSum=1.755;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:457,344:0.43:801
chr17	21215643	rs73302034	A	G	12225.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.109;ClippingRankSum=0.000;DB;DP=760;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.19;ReadPosRankSum=1.672;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:432,323:0.43:755
chr17	21215682	rs73302038	G	A	3900.77	.	AC=1;AF=0.500;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	0/1:242,181:0.43:423
chr17	21215700	rs73302043	T	G	2867.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:179,132:0.42:311
chr17	21216661	rs4994551	C	T	2567.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.804;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=0.870;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=1.472;QD=18.88;ReadPosRankSum=0.797;SOR=0.834;set=HC	GT:AD:AF:DP	0/1:70,66:0.49:136
chr17	21216664	rs4081986	A	G	2665.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.207;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=0.801;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.499;QD=18.38;ReadPosRankSum=1.293;SOR=0.844;set=HC	GT:AD:AF:DP	0/1:76,69:0.48:145
chr17	21216686	rs4994549	C	A	2127.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:128,104:0.45:232
chr17	21216710	rs4994548	T	C	3295.77	.	AC=1;AF=0.500;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	0/1:201,159:0.44:360
chr17	21216758	rs5819747	G	GCTTC	9585.73	.	AC=1;AF=0.500;AN=2;DB;DP=603;set=Intersection	GT:AD:AF:DP	0/1:340,248:0.42:588
chr17	21216788	rs1673840	C	T	5996.77	.	AC=1;AF=0.500;AN=2;DB;DP=737;set=Intersection	GT:AD:AF:DP	0/1:426,308:0.42:734
chr17	21216846	rs1657688	G	C	4745.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.288;ClippingRankSum=0.000;DB;DP=603;ExcessHet=3.0103;FS=0.535;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=2.064;QD=8.03;ReadPosRankSum=1.787;SOR=0.621;set=HC	GT:AD:AF:DP	0/1:346,245:0.41:591
chr17	21216862	rs185921294	G	A	1537.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.791;ClippingRankSum=0.000;DB;DP=515;ExcessHet=3.0103;FS=11.798;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=-0.995;QD=3.06;ReadPosRankSum=0.945;SOR=0.418;set=HC	GT:AD:AF:DP	0/1:378,125:0.25:503
chr17	21216891	rs934688	G	A	747.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.727;ClippingRankSum=0.000;DB;DP=361;ExcessHet=3.0103;FS=9.790;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=-0.714;QD=2.13;ReadPosRankSum=0.293;SOR=0.348;set=HC	GT:AD:AF:DP	0/1:279,72:0.21:351
chr17	21216951	rs1673839	C	G	1422.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:88,69:0.44:157
chr17	21216964	rs1657686	T	C	3249.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:42,94:0.69:136
chr17	21217239	rs4114291	G	A	376.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.831;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.54;ReadPosRankSum=1.322;SOR=0.583;set=HC	GT:AD:AF:DP	0/1:62,21:0.25:83
chr17	21217258	rs4114290	A	G	517.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.537;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=1.208;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.54;ReadPosRankSum=1.101;SOR=0.921;set=HC	GT:AD:AF:DP	0/1:86,28:0.25:114
chr17	21217290	rs1673837	G	A	1865.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:105,81:0.44:186
chr17	21217397	rs1657685	A	G	10651.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.969;ClippingRankSum=0.000;DB;DP=673;ExcessHet=3.0103;FS=0.527;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.97;ReadPosRankSum=-0.430;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:376,291:0.44:667
chr17	21217400	rs1622401	G	A	10791.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.299;ClippingRankSum=0.000;DB;DP=701;ExcessHet=3.0103;FS=0.525;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.55;ReadPosRankSum=-0.970;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:386,308:0.44:694
chr17	21217411	rs1657684	T	C	7131.77	.	AC=1;AF=0.500;AN=2;DB;DP=789;set=Intersection	GT:AD:AF:DP	0/1:435,343:0.44:778
chr17	21217513	rs2363198	G	A	7502.77	.	AC=1;AF=0.500;AN=2;DB;DP=838;set=Intersection	GT:AD:AF:DP	0/1:452,378:0.46:830
chr17	21217547	rs2363197	T	C	9263.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.351;ClippingRankSum=0.000;DB;DP=591;ExcessHet=3.0103;FS=0.531;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.81;ReadPosRankSum=2.382;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:328,258:0.44:586
chr17	21217554	rs2363196	C	T	8896.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.214;ClippingRankSum=0.000;DB;DP=535;ExcessHet=3.0103;FS=0.530;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.75;ReadPosRankSum=2.522;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:296,235:0.44:531
chr17	21217566	rs2363375	C	T	4454.77	.	AC=1;AF=0.500;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	0/1:246,208:0.46:454
chr17	21217586	rs2363374	G	T	5914.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.846;ClippingRankSum=0.000;DB;DP=344;ExcessHet=3.0103;FS=1.928;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.29;ReadPosRankSum=-0.015;SOR=0.833;set=HC	GT:AD:AF:DP	0/1:179,163:0.48:342
chr17	21217596	rs2363373	C	G	5567.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.327;ClippingRankSum=0.000;DB;DP=301;ExcessHet=3.0103;FS=1.509;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.62;ReadPosRankSum=-0.565;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:154,145:0.48:299
chr17	21318521	rs76804083	C	T	2246.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:108,60:0.36:168
chr17	21318546	rs112960185	A	G	3589.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.215;ClippingRankSum=0.000;DB;DP=244;ExcessHet=3.0103;FS=0.622;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.71;ReadPosRankSum=-0.734;SOR=0.609;set=HC	GT:AD:AF:DP	0/1:152,92:0.38:244
chr17	21318552	rs112854769	G	A	4087.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.167;ClippingRankSum=0.000;DB;DP=280;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.60;ReadPosRankSum=-0.512;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:175,105:0.38:280
chr17	21318555	rs58462457	C	T	48.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:223,55:0.20:278
chr17	21318569	rs74584621	C	T	5196.77	.	AC=1;AF=0.500;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	0/1:238,135:0.36:373
chr17	21318586	rs59891808	G	C	11633.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.634;ClippingRankSum=0.000;DB;DP=494;ExcessHet=3.0103;FS=0.572;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.55;ReadPosRankSum=2.364;SOR=0.768;set=HC	GT:AD:AF:DP	0/1:188,306:0.62:494
chr17	21318586	.	GTCTCTGTTG	CTCTCTGTTC,CTGTCTGTTG	2944	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.46;FR=0.5000,0.5000;HP=1;HapScore=3;MGOF=55;MMLQ=28;MQ=59.99;NF=84,93;NR=39,37;PP=282,2944;QD=2.72738109644;SC=ACATGCTGTCGTCTCTGTTGC;SbPval=0.43;Source=Platypus;TC=391;TCF=274;TCR=117;TR=123,130;WE=21318611;WS=21318576;set=Platypus	GT:AF:DP	0/1:0.31:391
chr17	21318588	rs77791524	C	G	6802.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.745;ClippingRankSum=0.000;DB;DP=504;ExcessHet=3.0103;FS=0.577;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.52;ReadPosRankSum=0.960;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:320,183:0.36:503
chr17	21318595	rs58780973	G	C	3528.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.175;ClippingRankSum=0.000;DB;DP=570;ExcessHet=3.0103;FS=0.641;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.21;ReadPosRankSum=1.105;SOR=0.780;set=HC	GT:AD:AF:DP	0/1:424,144:0.25:568
chr17	21318603	rs79809401	C	T	8132.77	.	AC=1;AF=0.500;AN=2;DB;DP=656;set=Intersection	GT:AD:AF:DP	0/1:389,245:0.39:634
chr17	21318629	rs58862472	C	A	7570.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.347;ClippingRankSum=0.000;DB;DP=920;ExcessHet=3.0103;FS=0.530;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.07;ReadPosRankSum=-0.904;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:332,352:0.51:684
chr17	21318663	rs72846666	G	A	9373.77	.	AC=1;AF=0.500;AN=2;DB;DP=1405;set=Intersection	GT:AD:AF:DP	0/1:889,506:0.36:1395
chr17	21318698	rs1657738	C	T	5358.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.592;ClippingRankSum=0.000;DB;DP=1668;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.27;ReadPosRankSum=2.697;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:1242,396:0.24:1638
chr17	21318770	rs3752033	G	A	11900.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.563;ClippingRankSum=0.000;DB;DP=1777;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.78;ReadPosRankSum=3.028;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:1369,385:0.22:1754
chr17	21318773	rs3752034	G	A	11846.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.633;ClippingRankSum=0.000;DB;DP=1776;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.75;ReadPosRankSum=2.902;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:1368,386:0.22:1754
chr17	21318782	rs78117732	G	A	9222.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.219;ClippingRankSum=0.000;DB;DP=1789;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.22;ReadPosRankSum=-0.969;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:1227,540:0.31:1767
chr17	21318867	rs73979893	G	A	7501.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.822;ClippingRankSum=0.000;DB;DP=1491;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.11;ReadPosRankSum=0.734;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:1028,440:0.30:1468
chr17	21318897	rs1657739	G	C	8800.77	.	AC=1;AF=0.500;AN=2;DB;DP=1398;set=Intersection	GT:AD:AF:DP	0/1:915,455:0.33:1370
chr17	21318918	rs79626424	G	A	3905.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.359;ClippingRankSum=0.000;DB;DP=1318;ExcessHet=3.0103;FS=1.361;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.10;ReadPosRankSum=0.057;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:990,268:0.21:1258
chr17	21318948	rs112314728	C	T	7391.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.762;ClippingRankSum=0.000;DB;DP=1219;ExcessHet=3.0103;FS=1.392;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.17;ReadPosRankSum=2.223;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:950,248:0.21:1198
chr17	21318951	rs75757803	C	T	7643.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.504;ClippingRankSum=0.000;DB;DP=1199;ExcessHet=3.0103;FS=1.392;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.46;ReadPosRankSum=1.138;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:932,251:0.21:1183
chr17	21318952	rs8076599	A	G	19782.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;ClippingRankSum=0.000;DB;DP=1196;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.78;ReadPosRankSum=0.540;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:490,689:0.58:1179
chr17	21318969	rs79666990	C	T	7560.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.835;ClippingRankSum=0.000;DB;DP=1168;ExcessHet=3.0103;FS=3.136;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.56;ReadPosRankSum=-0.165;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:909,244:0.21:1153
chr17	21318981	rs9909970	C	T	7249.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.887;ClippingRankSum=0.000;DB;DP=1113;ExcessHet=3.0103;FS=4.130;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.61;ReadPosRankSum=-1.398;SOR=1.049;set=HC	GT:AD:AF:DP	0/1:861,235:0.21:1096
chr17	21319007	rs1657740	G	A	7892.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.561;ClippingRankSum=0.000;DB;DP=1036;ExcessHet=3.0103;FS=5.115;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.11;ReadPosRankSum=0.850;SOR=0.426;set=HC	GT:AD:AF:DP	0/1:577,396:0.41:973
chr17	21319007	.	GG	AC	2944	.	AC=1;AF=0.500;AN=2;BRF=0.44;FR=0.5000;HP=3;HapScore=1;MGOF=44;MMLQ=24;MQ=60.0;NF=136;NR=136;PP=2944;QD=20;SC=GCTGAGGGCCGGGGCCGCACA;SbPval=0.34;Source=Platypus;TC=783;TCF=358;TCR=425;TR=272;WE=21319016;WS=21318997;set=Platypus	GT:AD:AF:DP	1/0:511,272:0.35:783
chr17	21319008	rs1657741	G	C	18276.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.132;ClippingRankSum=0.000;DB;DP=1043;ExcessHet=3.0103;FS=0.528;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.67;ReadPosRankSum=0.397;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:427,552:0.56:979
chr17	21319069	rs76265595	G	A	8963.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.629;ClippingRankSum=0.000;DB;DP=1141;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.89;ReadPosRankSum=2.184;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:854,282:0.25:1136
chr17	21319079	rs76518282	C	A	9693.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.769;ClippingRankSum=0.000;DB;DP=1146;ExcessHet=3.0103;FS=0.606;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.50;ReadPosRankSum=3.006;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:853,288:0.25:1141
chr17	21319087	rs75029097	G	A	9556.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.204;ClippingRankSum=0.000;DB;DP=1129;ExcessHet=3.0103;FS=0.592;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.49;ReadPosRankSum=2.028;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:832,294:0.26:1126
chr17	21319110	rs77283567	G	A	4775.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.899;ClippingRankSum=0.000;DB;DP=1124;ExcessHet=3.0103;FS=0.595;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.28;ReadPosRankSum=1.425;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:826,291:0.26:1117
chr17	21319121	rs1714864	C	T	7866.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.655;ClippingRankSum=0.000;DB;DP=1125;ExcessHet=3.0103;FS=1.142;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.03;ReadPosRankSum=-0.154;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:713,406:0.36:1119
chr17	21319171	rs73313922	G	A	5279.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.463;ClippingRankSum=0.000;DB;DP=1188;ExcessHet=3.0103;FS=1.251;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.49;ReadPosRankSum=-0.684;SOR=0.830;set=HC	GT:AD:AF:DP	0/1:853,322:0.27:1175
chr17	21319208	rs73979896	C	T	6209.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.699;ClippingRankSum=0.000;DB;DP=1233;ExcessHet=3.0103;FS=0.569;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.06;ReadPosRankSum=1.181;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:868,360:0.29:1228
chr17	21319230	rs1657742	G	C	7423.77	.	AC=1;AF=0.500;AN=2;DB;DP=1243;set=Intersection	GT:AD:AF:DP	0/1:848,390:0.32:1238
chr17	21319251	rs73313923	C	T	12501.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.551;ClippingRankSum=0.000;DB;DP=1275;ExcessHet=3.0103;FS=0.570;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.86;ReadPosRankSum=0.674;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:883,385:0.30:1268
chr17	21319272	rs73313926	C	T	13381.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.481;ClippingRankSum=0.000;DB;DP=1289;ExcessHet=3.0103;FS=1.212;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.45;ReadPosRankSum=-0.762;SOR=0.599;set=HC	GT:AD:AF:DP	0/1:899,381:0.30:1280
chr17	21319285	rs72846667	C	T	12493.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.245;ClippingRankSum=0.000;DB;DP=1297;ExcessHet=3.0103;FS=1.228;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.72;ReadPosRankSum=-0.816;SOR=0.574;set=HC	GT:AD:AF:DP	0/1:916,370:0.29:1286
chr17	21319302	rs1657743	T	C	25610.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.123;ClippingRankSum=0.000;DB;DP=1347;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.18;ReadPosRankSum=-0.832;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:519,816:0.61:1335
chr17	21319311	rs72846668	C	T	6238.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.561;ClippingRankSum=0.000;DB;DP=1349;ExcessHet=3.0103;FS=1.249;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.67;ReadPosRankSum=-0.007;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:964,372:0.28:1336
chr17	21319369	rs77048459	G	A	11872.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.046;ClippingRankSum=0.000;DB;DP=1587;ExcessHet=3.0103;FS=1.295;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.55;ReadPosRankSum=0.901;SOR=0.790;set=HC	GT:AD:AF:DP	0/1:1175,397:0.25:1572
chr17	21319392	rs73979899	G	A	12526.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.830;ClippingRankSum=0.000;DB;DP=1647;ExcessHet=3.0103;FS=0.617;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.66;ReadPosRankSum=0.870;SOR=0.817;set=HC	GT:AD:AF:DP	0/1:1247,388:0.24:1635
chr17	21319399	rs4985866	A	G	5305.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.259;ClippingRankSum=0.000;DB;DP=1642;ExcessHet=3.0103;FS=1.339;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.26;ReadPosRankSum=-0.336;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:1253,376:0.23:1629
chr17	21319407	rs16962951	C	T	11853.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.372;ClippingRankSum=0.000;DB;DP=1642;ExcessHet=3.0103;FS=0.620;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-3.165;QD=7.27;ReadPosRankSum=0.508;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:1255,376:0.23:1631
chr17	21319436	rs77270326	G	A	9111.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.339;ClippingRankSum=0.000;DB;DP=1468;ExcessHet=3.0103;FS=1.373;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=-9.442;QD=6.24;ReadPosRankSum=0.747;SOR=0.852;set=HC	GT:AD:AF:DP	0/1:1157,303:0.21:1460
chr17	21319439	rs76684759	T	G	9153.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.268;ClippingRankSum=0.000;DB;DP=1456;ExcessHet=3.0103;FS=2.225;MLEAC=1;MLEAF=0.500;MQ=59.77;MQRankSum=-9.946;QD=6.32;ReadPosRankSum=1.024;SOR=0.849;set=HC	GT:AD:AF:DP	0/1:1152,296:0.20:1448
chr17	21319452	rs73313929	G	A	8585.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.351;ClippingRankSum=0.000;DB;DP=1326;ExcessHet=3.0103;FS=1.405;MLEAC=1;MLEAF=0.500;MQ=59.65;MQRankSum=-11.351;QD=6.51;ReadPosRankSum=-0.656;SOR=0.881;set=HC	GT:AD:AF:DP	0/1:1044,274:0.21:1318
chr17	21319465	.	T	C	7209.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.830;ClippingRankSum=0.000;DP=1232;ExcessHet=3.0103;FS=2.259;MLEAC=1;MLEAF=0.500;MQ=59.53;MQRankSum=-12.844;QD=5.89;ReadPosRankSum=-0.138;SOR=0.924;set=HC	GT:AD:AF:DP	0/1:984,240:0.20:1224
chr17	21319470	.	T	C	6923.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.317;ClippingRankSum=0.000;DP=1165;ExcessHet=3.0103;FS=3.241;MLEAC=1;MLEAF=0.500;MQ=59.47;MQRankSum=-12.790;QD=5.98;ReadPosRankSum=-0.514;SOR=1.029;set=HC	GT:AD:AF:DP	0/1:931,226:0.20:1157
chr17	21319473	rs1657744	G	A	8928.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.498;ClippingRankSum=0.000;DB;DP=1141;ExcessHet=3.0103;FS=0.536;MLEAC=1;MLEAF=0.500;MQ=59.45;MQRankSum=4.988;QD=7.89;ReadPosRankSum=-1.303;SOR=0.594;set=HC	GT:AD:AF:DP	0/1:685,447:0.39:1132
chr17	21319488	rs77176173	C	T	5085.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.655;ClippingRankSum=0.000;DB;DP=997;ExcessHet=3.0103;FS=4.533;MLEAC=1;MLEAF=0.500;MQ=59.30;MQRankSum=-14.224;QD=5.13;ReadPosRankSum=-0.055;SOR=1.083;set=HC	GT:AD:AF:DP	0/1:811,180:0.18:991
chr17	21319519	rs78113532	G	C	3763.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.790;ClippingRankSum=0.000;DB;DP=790;ExcessHet=3.0103;FS=2.424;MLEAC=1;MLEAF=0.500;MQ=58.97;MQRankSum=-15.709;QD=4.80;ReadPosRankSum=-1.087;SOR=0.974;set=HC	GT:AD:AF:DP	0/1:645,139:0.18:784
chr17	21319523	rs77987694	C	T	3935.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.221;ClippingRankSum=0.000;DB;DP=752;ExcessHet=3.0103;FS=2.420;MLEAC=1;MLEAF=0.500;MQ=58.89;MQRankSum=-15.358;QD=5.28;ReadPosRankSum=-1.586;SOR=0.958;set=HC	GT:AD:AF:DP	0/1:612,134:0.18:746
chr17	21319527	rs80022364	C	T	3896.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.891;ClippingRankSum=0.000;DB;DP=739;ExcessHet=3.0103;FS=3.392;MLEAC=1;MLEAF=0.500;MQ=58.87;MQRankSum=-15.190;QD=5.32;ReadPosRankSum=-2.089;SOR=0.981;set=HC	GT:AD:AF:DP	0/1:599,134:0.18:733
chr17	21319543	rs80335301	G	A	3522.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.573;ClippingRankSum=0.000;DB;DP=684;ExcessHet=3.0103;FS=0.701;MLEAC=1;MLEAF=0.500;MQ=58.66;MQRankSum=-16.955;QD=5.18;ReadPosRankSum=-1.107;SOR=0.798;set=HC	GT:AD:AF:DP	0/1:558,122:0.18:680
chr17	21319560	rs74801394	G	T	3547.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.956;ClippingRankSum=0.000;DB;DP=649;ExcessHet=3.0103;FS=0.658;MLEAC=1;MLEAF=0.500;MQ=58.57;MQRankSum=-15.164;QD=5.53;ReadPosRankSum=-2.461;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:510,132:0.21:642
chr17	21319650	.	CGAG	C	5672.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.753;ClippingRankSum=0.000;DP=797;ExcessHet=3.0103;FS=5.049;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=-10.784;QD=7.41;ReadPosRankSum=0.334;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:585,181:0.24:766
chr17	21319682	rs80203231	C	T	2554.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.230;ClippingRankSum=0.000;DB;DP=755;ExcessHet=3.0103;FS=2.953;MLEAC=1;MLEAF=0.500;MQ=59.63;MQRankSum=-13.921;QD=3.40;ReadPosRankSum=1.416;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:570,182:0.24:752
chr17	21319716	rs78135255	G	A	5489.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.979;ClippingRankSum=0.000;DB;DP=718;ExcessHet=3.0103;FS=0.605;MLEAC=1;MLEAF=0.500;MQ=59.30;MQRankSum=-16.216;QD=7.67;ReadPosRankSum=1.054;SOR=0.780;set=HC	GT:AD:AF:DP	0/1:539,177:0.25:716
chr17	21319728	rs76681424	T	C	5634.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.328;ClippingRankSum=0.000;DB;DP=655;ExcessHet=3.0103;FS=0.606;MLEAC=1;MLEAF=0.500;MQ=59.10;MQRankSum=-16.402;QD=8.63;ReadPosRankSum=0.076;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:486,167:0.26:653
chr17	21319743	rs76267885	A	G	5263.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.847;ClippingRankSum=0.000;DB;DP=603;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.02;MQRankSum=-15.757;QD=8.77;ReadPosRankSum=-0.528;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:446,154:0.26:600
chr17	21319767	rs1612176	C	T	7240.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.785;ClippingRankSum=0.000;DB;DP=494;ExcessHet=3.0103;FS=1.719;MLEAC=1;MLEAF=0.500;MQ=59.05;MQRankSum=0.000;QD=19.57;ReadPosRankSum=-1.152;SOR=0.595;set=HC	GT:AD:AF:DP	0/1:165,205:0.55:370
chr17	21319785	rs1657745	C	T	6198.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.131;ClippingRankSum=0.000;DB;DP=427;ExcessHet=3.0103;FS=1.814;MLEAC=1;MLEAF=0.500;MQ=59.07;MQRankSum=4.930;QD=14.59;ReadPosRankSum=-0.659;SOR=0.549;set=HC	GT:AD:AF:DP	0/1:254,171:0.40:425
chr17	21319786	rs78547883	G	A	3372.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.217;ClippingRankSum=0.000;DB;DP=419;ExcessHet=3.0103;FS=3.994;MLEAC=1;MLEAF=0.500;MQ=59.07;MQRankSum=-10.151;QD=8.09;ReadPosRankSum=0.820;SOR=1.066;set=HC	GT:AD:AF:DP	0/1:314,103:0.25:417
chr17	21319845	rs72846670	C	T	2454.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:180,77:0.30:257
chr17	21319860	rs2917720	C	T,A	2657.77	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=2.194;ClippingRankSum=0.000;DB;DP=225;ExcessHet=3.0103;FS=1.151;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.98;MQRankSum=0.000;QD=11.87;ReadPosRankSum=-0.769;SOR=0.582;set=HC	GT:AD:AF:DP	1/2:76,83,65:0.37,0.29:224
chr17	21319860	.	CGGCCTCAG	AGGCCTCAT,TGGCCTCAG	1332	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.38;FR=0.5000,0.5000;HP=2;HapScore=2;MGOF=44;MMLQ=24;MQ=59.96;NF=16,17;NR=25,45;PP=1332,1023;QD=33.7918993869;SC=GAAGCCGGGACGGCCTCAGCC;SbPval=0.2;Source=Platypus;TC=166;TCF=50;TCR=116;TR=41,62;WE=21319876;WS=21319850;set=Platypus	GT:AF:DP	0/1:0.25:166
chr17	21319868	rs73979902	G	T	2198.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.026;ClippingRankSum=0.000;DB;DP=212;ExcessHet=3.0103;FS=10.805;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=10.42;ReadPosRankSum=0.660;SOR=0.281;set=HC	GT:AD:AF:DP	0/1:147,64:0.30:211
chr17	21319908	rs66981137	C	T	847.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:105,49:0.32:154
chr17	21319943	rs5021699	A	G	580.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:81,33:0.29:114
chr17	21319955	rs76506689	G	A	1414.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:58,43:0.43:101
chr17	21319977	rs34762677	A	G	716.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.281;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=3.740;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.10;ReadPosRankSum=-0.265;SOR=0.336;set=HC	GT:AD:AF:DP	0/1:46,25:0.35:71
chr17	21319989	rs5021700	C	A	1040.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.143;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=1.379;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.63;ReadPosRankSum=0.718;SOR=0.402;set=HC	GT:AD:AF:DP	0/1:19,27:0.59:46
chr17	21319993	rs5021701	T	C	1536.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.748;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=1.440;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=30.74;ReadPosRankSum=-0.945;SOR=1.146;set=HC	GT:AD:AF:DP	0/1:14,36:0.72:50
chr17	21320008	rs78435971	C	T	568.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.730;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=3.819;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.58;ReadPosRankSum=-0.047;SOR=0.219;set=HC	GT:AD:AF:DP	0/1:23,16:0.41:39
chr17	21320012	rs77515828	C	T	490.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.691;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.43;ReadPosRankSum=0.498;SOR=0.460;set=HC	GT:AD:AF:DP	0/1:21,13:0.38:34
chr17	21320025	rs5021702	C	T	83.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.582;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=2.556;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.10;ReadPosRankSum=-1.162;SOR=1.961;set=HC	GT:AD:AF:DP	0/1:21,6:0.22:27
chr17	21535972	rs10221228	A	G	342.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:98,16:0.14:114
chr17	21535979	rs113145914	TCA	T	240.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.871;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=6.343;MLEAC=1;MLEAF=0.500;MQ=54.49;MQRankSum=-6.854;QD=1.82;ReadPosRankSum=0.763;SOR=1.629;set=HC	GT:AD:AF:DP	0/1:117,15:0.11:132
chr17	21536022	rs9325913	T	G	94.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.285;ClippingRankSum=0.000;DB;DP=249;ExcessHet=3.0103;FS=13.439;MLEAC=1;MLEAF=0.500;MQ=56.39;MQRankSum=-10.418;QD=0.38;ReadPosRankSum=-0.041;SOR=2.109;set=HC	GT:AD:AF:DP	0/1:222,25:0.10:247
chr17	21536065	rs9325914	A	G	868.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.880;ClippingRankSum=0.000;DB;DP=450;ExcessHet=3.0103;FS=18.509;MLEAC=1;MLEAF=0.500;MQ=56.09;MQRankSum=-17.360;QD=1.95;ReadPosRankSum=-3.040;SOR=1.966;set=HC	GT:AD:AF:DP	0/1:364,81:0.18:445
chr17	21536106	rs9325915	T	C	2372.77	.	AC=1;AF=0.500;AN=2;DB;DP=557;set=Intersection	GT:AD:AF:DP	0/1:408,145:0.26:553
chr17	21536168	rs9325916	G	A	2239.77	.	AC=1;AF=0.500;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	0/1:245,127:0.34:372
chr17	21544462	rs9285742	G	A	1028.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.225;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=1.098;MLEAC=1;MLEAF=0.500;MQ=59.45;MQRankSum=-1.815;QD=15.83;ReadPosRankSum=0.900;SOR=0.884;set=HC	GT:AD:AF:DP	0/1:38,27:0.42:65
chr17	21544470	rs9285743	A	G	1098.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.085;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=2.126;MLEAC=1;MLEAF=0.500;MQ=59.20;MQRankSum=-2.397;QD=14.85;ReadPosRankSum=-1.013;SOR=0.986;set=HC	GT:AD:AF:DP	0/1:42,32:0.43:74
chr17	21544587	rs9285744	A	G	2372.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:134,118:0.47:252
chr17	21544599	rs9912297	A	G	1352.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:163,77:0.32:240
chr17	21544646	rs9285745	T	C	1765.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:84,84:0.50:168
chr17	21544674	rs9747056	T	A	1224.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:53,59:0.53:112
chr17	21730653	rs11656087	G	C	3869.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:2,141:0.99:143
chr17	22066735	.	CA	GG	103.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.622;ClippingRankSum=0.000;DP=233;ExcessHet=3.0103;FS=3.412;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.81;MQRankSum=-15.079;QD=0.45;ReadPosRankSum=-0.120;SOR=1.115;set=HC	GT:AD:AF:DP	0/1:211,18:0.08:229
chr17	22066745	rs78440652	C	G	182.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.172;ClippingRankSum=0.000;DB;DP=267;ExcessHet=3.0103;FS=0.803;MLEAC=1;MLEAF=0.500;MQ=58.51;MQRankSum=-16.157;QD=0.69;ReadPosRankSum=-0.858;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:238,25:0.10:263
chr17	22066776	rs75644031	T	C	1730.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.677;ClippingRankSum=0.000;DB;DP=359;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.78;MQRankSum=-18.092;QD=4.86;ReadPosRankSum=-1.441;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:296,60:0.17:356
chr17	22066780	rs78507742	C	T	1703.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.563;ClippingRankSum=0.000;DB;DP=379;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.64;MQRankSum=-18.660;QD=4.53;ReadPosRankSum=-1.693;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:309,67:0.18:376
chr17	22066807	rs78727354	G	T	2208.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.053;ClippingRankSum=0.000;DB;DP=447;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.07;MQRankSum=-20.228;QD=4.97;ReadPosRankSum=0.295;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:350,94:0.21:444
chr17	22066822	rs137955476	C	T	2274.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.869;ClippingRankSum=0.000;DB;DP=431;ExcessHet=3.0103;FS=1.353;MLEAC=1;MLEAF=0.500;MQ=56.87;MQRankSum=-19.646;QD=5.31;ReadPosRankSum=1.956;SOR=0.630;set=HC	GT:AD:AF:DP	0/1:333,95:0.22:428
chr17	22066835	rs147079852	C	T	2301.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.727;ClippingRankSum=0.000;DB;DP=408;ExcessHet=3.0103;FS=3.005;MLEAC=1;MLEAF=0.500;MQ=56.62;MQRankSum=-18.845;QD=5.71;ReadPosRankSum=2.446;SOR=0.544;set=HC	GT:AD:AF:DP	0/1:310,93:0.23:403
chr17	22066856	rs138169151	CAG	C	2400.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.256;ClippingRankSum=0.000;DB;DP=344;ExcessHet=3.0103;FS=2.939;MLEAC=1;MLEAF=0.500;MQ=56.62;MQRankSum=-17.135;QD=7.41;ReadPosRankSum=1.741;SOR=0.509;set=HC	GT:AD:AF:DP	0/1:247,77:0.24:324
chr17	22066870	rs79914182	G	T	1799.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.220;ClippingRankSum=0.000;DB;DP=293;ExcessHet=3.0103;FS=3.110;MLEAC=1;MLEAF=0.500;MQ=56.40;MQRankSum=-16.341;QD=6.21;ReadPosRankSum=-0.157;SOR=0.492;set=HC	GT:AD:AF:DP	0/1:218,72:0.25:290
chr17	25753033	rs13341669	T	C	2802.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:67,126:0.65:193
chr17	25887358	rs35246887	C	T	402.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:48,19:0.28:67
chr17	25887530	rs2945397	G	C	4378.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:126,199:0.61:325
chr17	25887541	rs2948526	C	T	4102.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:127,192:0.60:319
chr17	25887571	rs61054489	T	C	3274.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:104,151:0.59:255
chr17	25909850	rs2293181	G	T	6834.77	.	AC=1;AF=0.500;AN=2;DB;DP=492;set=Intersection	GT:AD:AF:DP	0/1:171,318:0.65:489
chr17	25912828	rs2945373	A	G	5028.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr17	25917810	rs1403321	A	G	2729.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:65,119:0.65:184
chr17	25924412	rs377092703	C	T	6826.77	.	AC=1;AF=0.500;AN=2;DB;DP=524;set=Intersection	GT:AD:AF:DP	0/1:177,339:0.66:516
chr17	25924596	rs16966333	C	T	444.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:62,25:0.29:87
chr17	25944235	rs4267373	A	G	1949.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:1,75:0.99:76
chr17	25950175	rs2241906	C	T	377.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:27,18:0.40:45
chr17	25950220	rs1075952	G	A	522.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:51,25:0.33:76
chr17	25958304	rs3751093	G	A	1266.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:171,75:0.30:246
chr17	25974545	rs4794976	T	G	4372.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr17	25974600	rs113216780	A	AATTATT,AATT	1147.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=51;set=Intersection	GT:AF:DP	1/1:1.00:27
chr17	25974617	rs16966434	C	T	511.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:10,19:0.66:29
chr17	25976070	rs9892800	C	T	2493.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:60,101:0.63:161
chr17	25981832	rs73985841	C	T	2531.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:49,115:0.70:164
chr17	25982119	rs4795843	T	C	2997.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr17	26073050	rs138929274	T	G	291.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.482;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.50;MQRankSum=-4.950;QD=9.12;ReadPosRankSum=0.853;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:16,16:0.50:32
chr17	26073136	rs142859551	T	G	286.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.987;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=3.093;MLEAC=1;MLEAF=0.500;MQ=47.40;MQRankSum=-4.641;QD=8.96;ReadPosRankSum=-0.166;SOR=1.314;set=HC	GT:AD:AF:DP	0/1:17,15:0.47:32
chr17	26079737	rs2304887	T	G	686.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.21;QD=32.70;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr17	26079849	rs71373641	T	C	793.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.840;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=7.585;MLEAC=1;MLEAF=0.500;MQ=45.53;MQRankSum=-8.098;QD=5.44;ReadPosRankSum=0.053;SOR=1.426;set=HC	GT:AD:AF:DP	0/1:109,37:0.25:146
chr17	26080008	rs4796027	G	A	1727.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:40,78:0.66:118
chr17	26088337	rs59685746	GC	G	282.74	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr17	26089867	rs1060826	T	C	1649.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr17	26092555	rs2297512	G	A	838.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr17	26092631	rs1060822	A	G	1755.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr17	26099171	rs2274894	T	G	1228.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr17	26100321	rs2248814	A	G	3060.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:1,114:0.99:115
chr17	26101237	rs3729966	G	A	311.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:36,17:0.32:53
chr17	26108040	rs2297520	T	C	10693.77	.	AC=2;AF=1.00;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	1/1:0,399:1.00:399
chr17	26109030	rs3729508	T	C	6719.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr17	26109102	rs3730017	G	A	4846.77	.	AC=1;AF=0.500;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	0/1:160,222:0.58:382
chr17	26115949	rs16966563	T	C	3329.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:69,153:0.69:222
chr17	26116896	rs2072324	C	A	158.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.314;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.29;ReadPosRankSum=-0.958;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:21,9:0.30:30
chr17	26125918	rs3730013	G	A	1709.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:156,86:0.36:242
chr17	26206414	rs3751972	C	A	1276.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr17	26519204	rs3182380	C	T	654.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:78,36:0.32:114
chr17	26574820	rs61141479	G	A	5871.77	.	AC=1;AF=0.500;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	0/1:126,252:0.67:378
chr17	26575380	rs2292633	G	A	4299.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:88,174:0.66:262
chr17	26633345	rs200356502	GT	G	96.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.198;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.22;ReadPosRankSum=-0.691;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:17,13:0.43:30
chr17	26646434	rs5819836	G	GC	6502.73	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr17	26657261	rs34843464	CA	C	353.14	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.794;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.25;MQRankSum=1.237;QD=9.54;ReadPosRankSum=0.332;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:7,30:0.81:37
chr17	26667226	rs2234116	C	T	560.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:53,26:0.33:79
chr17	26669245	rs5819838	A	AG	3427.73	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr17	26669330	.	C	G	4428.77	.	AC=1;AF=0.500;AN=2;DP=309;set=Intersection	GT:AD:AF:DP	0/1:109,196:0.64:305
chr17	26676135	rs13469	C	T	6454.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:2,240:0.99:242
chr17	26678901	.	T	C	255.77	.	AC=1;AF=0.500;AN=2;DP=38;set=Intersection	GT:AD:AF:DP	0/1:22,14:0.39:36
chr17	26678960	rs2073867	G	C	439.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr17	26684283	rs11314852	GT	G	5109.73	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr17	26684390	rs11448856	G	GC	5079.73	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr17	26684394	rs17856014	T	G	5088.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr17	26684449	rs4795429	G	C	1889.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr17	26684529	rs113967755	G	GGC	1087.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr17	26687484	rs11379368	G	GC	2277.73	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr17	26687898	rs11382918	G	GC	2087.73	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr17	26691321	rs9910163	A	G	3411.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr17	26691490	.	ACACTGAGGTG	A	2031.73	.	AC=1;AF=0.500;AN=2;DP=111;set=Intersection	GT:AD:AF:DP	0/1:52,57:0.52:109
chr17	26692224	rs11387886	A	AG	14934.73	.	AC=2;AF=1.00;AN=2;DB;DP=549;set=Intersection	GT:AD:AF:DP	1/1:2,542:1.00:544
chr17	26694861	rs704	G	A	11656.77	.	AC=2;AF=1.00;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	1/1:0,440:1.00:440
chr17	26695704	rs2227725	A	G	2669.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr17	26695832	rs2071379	A	G	8364.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:2,314:0.99:316
chr17	26699121	rs7212814	G	C	1405.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr17	26699195	rs11437592	C	CG	1572.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr17	26699199	rs112387743	G	GC	1594.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.90;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr17	26699205	rs11340312	GA	G	1473.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr17	26699367	rs11437594	G	GC	2315.73	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr17	26708298	.	A	AGC	13404.73	.	AC=2;AF=1.00;AN=2;DP=298;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.91;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:0,292:1.00:292
chr17	26708302	.	GGT	G	13521.73	.	AC=2;AF=1.00;AN=2;DP=304;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.63;SOR=0.796;set=HC	GT:AD:AF:DP	1/1:0,303:1.00:303
chr17	26708550	rs11658194	TC	CG	10201.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr17	26716821	rs4795433	C	T	1775.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr17	26716917	rs4795434	G	T	2054.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr17	26727721	rs5819844	GA	G	2025.73	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr17	26729428	rs4795436	C	T	2671.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr17	26816365	rs11443311	G	GC	1567.73	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:126,68:0.35:194
chr17	26817537	rs11568466	G	A	2739.77	.	AC=1;AF=0.500;AN=2;DB;DP=500;set=Intersection	GT:AD:AF:DP	0/1:344,152:0.31:496
chr17	26818676	rs9890678	T	C	14782.77	.	AC=2;AF=1.00;AN=2;DB;DP=539;set=Intersection	GT:AD:AF:DP	1/1:0,524:1.00:524
chr17	26824156	rs11567842	A	G	1456.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.017;ClippingRankSum=0.000;DB;DP=402;ExcessHet=3.0103;FS=1.917;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.65;ReadPosRankSum=0.401;SOR=0.774;set=HC	GT:AD:AF:DP	0/1:300,99:0.25:399
chr17	26850810	rs10527420	TTCTCTCTCTCTCTCTC	T,TTCTCTC,TTCTCTCTC	1273.73	.	AC=1,1,0;AF=0.500,0.500,0.00;AN=2;DB;DP=47;set=Intersection	GT:AF:DP	1/2:0.79,0.21:39
chr17	26850929	rs483434	A	C	6860.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;MQ=60.04;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr17	26851501	rs614434	G	A	8663.77	.	AC=1;AF=0.500;AN=2;DB;DP=553;set=Intersection	GT:AD:AF:DP	0/1:164,382:0.70:546
chr17	26856261	rs548973	A	G	3527.77	.	AC=1;AF=0.500;AN=2;DB;DP=558;set=Intersection	GT:AD:AF:DP	0/1:353,198:0.36:551
chr17	26861605	rs373952661	CA	C	99.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.077;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=1.351;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.04;ReadPosRankSum=0.129;SOR=0.454;set=HC	GT:AD:AF:DP	0/1:31,18:0.37:49
chr17	26874314	rs2070139	G	A	5839.77	.	AC=1;AF=0.500;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	0/1:135,258:0.66:393
chr17	26883313	rs631905	A	G	4730.77	.	AC=1;AF=0.500;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	0/1:120,219:0.65:339
chr17	26885638	.	GTTTAGATTTATATTC	G	1382.73	.	AC=1;AF=0.500;AN=2;DP=120;set=Intersection	GT:AD:AF:DP	0/1:74,40:0.35:114
chr17	26904517	rs652677	C	A	448.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:7,19:0.73:26
chr17	26923218	.	CA	C	66.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.116;ClippingRankSum=0.000;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=2.000;QD=0.55;ReadPosRankSum=-0.935;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:96,26:0.21:122
chr17	26947652	rs688536	G	A	2713.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:51,117:0.70:168
chr17	26950632	.	C	A	294.77	.	AC=1;AF=0.500;AN=2;DP=19;set=Intersection	GT:AD:AF:DP	0/1:7,12:0.63:19
chr17	26961753	rs61732688	C	T	1283.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:130,67:0.34:197
chr17	26988101	rs11385140	T	TA	61.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.621;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.81;ReadPosRankSum=0.335;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:13,9:0.41:22
chr17	27000391	rs9904043	A	G	526.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:59,31:0.34:90
chr17	27002402	rs9892089	A	G	1787.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:190,105:0.36:295
chr17	27004703	rs7207976	C	A	894.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:84,46:0.35:130
chr17	27009749	rs12051648	C	T	650.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:92,39:0.30:131
chr17	27010135	.	C	T	1601.77	.	AC=1;AF=0.500;AN=2;DP=273;set=Intersection	GT:AD:AF:DP	0/1:182,85:0.32:267
chr17	27014942	.	CT	C	97.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.964;ClippingRankSum=0.000;DP=53;ExcessHet=3.0103;FS=3.650;MLEAC=1;MLEAF=0.500;MQ=60.41;MQRankSum=1.703;QD=2.04;ReadPosRankSum=-0.741;SOR=0.250;set=HC	GT:AD:AF:DP	0/1:31,17:0.35:48
chr17	27044482	rs11545700	C	A	5203.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:96,221:0.70:317
chr17	27049945	rs200447961	C	T	3085.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:74,141:0.66:215
chr17	27050924	rs368186775	AAT	A	149.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.695;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.94;ReadPosRankSum=0.359;SOR=0.347;set=HC	GT:AD:AF:DP	0/1:42,9:0.18:51
chr17	27053568	rs12952249	G	A	255.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:20,13:0.39:33
chr17	27061271	rs17720826	G	A	2531.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:36,101:0.74:137
chr17	27061704	.	C	CA	202.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.586;ClippingRankSum=0.000;DP=107;ExcessHet=3.0103;FS=5.440;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=0.017;QD=2.01;ReadPosRankSum=1.049;SOR=1.478;set=HC	GT:AD:AF:DP	0/1:75,26:0.26:101
chr17	27093475	rs72048305	T	TA	214.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.703;ClippingRankSum=0.000;DB;DP=219;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.871;QD=1.15;ReadPosRankSum=0.655;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:144,42:0.23:186
chr17	27185827	rs2242345	C	T	8916.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr17	27187636	rs9279	G	T	8005.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:1,302:1.00:303
chr17	27188296	rs28448745	A	C	448.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr17	27207571	rs1060244	C	T	2241.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr17	27210253	rs6505095	T	C	6928.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr17	27213104	.	AC	A	571	.	AC=2;AF=1.00;AN=2;BRF=0.39;FR=1.0000;HP=6;HapScore=1;MGOF=6;MMLQ=24;MQ=54.62;NF=1;NR=17;PP=571;QD=33.2222222222;SC=CAGTAATCCAACCCCCCAACT;SbPval=0.63;Source=Platypus;TC=18;TCF=1;TCR=17;TR=18;WE=27213112;WS=27213094;set=Platypus	GT:AD:AF:DP	1/1:0,18:1.00:18
chr17	27216152	rs78073990	G	A	971.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:101,52:0.34:153
chr17	27225586	rs4795472	A	T	1148.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:137,63:0.32:200
chr17	27225937	rs4795473	C	T	376.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:33,19:0.37:52
chr17	27238075	rs2277665	G	A	933.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:89,52:0.37:141
chr17	27246368	rs68042462	CCTCCCCTCCTTGATCCTAACATT	C	2059.73	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr17	27286750	rs9907950	G	A	683.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:51,34:0.40:85
chr17	27286851	rs1976165	T	C	1192.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:163,73:0.31:236
chr17	27290969	rs11450637	T	TG	2104.73	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr17	27306661	rs62068969	G	A	3976.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:100,180:0.64:280
chr17	27306898	.	C	CGT	173.75	.	AC=2;AF=1.00;AN=2;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.72;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr17	27613677	rs12452857	G	A	9266.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:0,330:1.00:330
chr17	27809104	rs6505138	A	G	148.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:8,5:0.38:13
chr17	27816599	.	T	TA	105.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.477;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.81;ReadPosRankSum=-1.222;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:12,10:0.45:22
chr17	27829588	rs367720840	CT	C	306.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.815;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.12;ReadPosRankSum=0.394;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:102,43:0.30:145
chr17	27835138	rs508706	C	T	5885.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr17	27835211	rs622096	A	C	1067.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:21,41:0.66:62
chr17	27857698	rs536327	C	T	1928.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:54,84:0.61:138
chr17	27861113	rs150300324	TTC	T	154.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.797;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.18;ReadPosRankSum=-0.250;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:58,13:0.18:71
chr17	27861329	rs3744624	T	C	348.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:33,20:0.38:53
chr17	27861340	rs148540843	A	T	199.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:27,13:0.33:40
chr17	27869968	rs507577	G	A	7202.77	.	AC=1;AF=0.500;AN=2;DB;DP=498;set=Intersection	GT:AD:AF:DP	0/1:167,320:0.66:487
chr17	27889578	rs539307	T	C	1723.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:126,85:0.40:211
chr17	27889986	rs542939	T	C	2068.77	.	AC=1;AF=0.500;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	0/1:311,122:0.28:433
chr17	27895679	.	C	CGG	154.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.414;ClippingRankSum=0.000;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.37;ReadPosRankSum=-0.822;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:15,6:0.29:21
chr17	27895683	.	C	CGCGGG	175.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.403;ClippingRankSum=0.000;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.28;ReadPosRankSum=1.408;SOR=0.927;set=HC	GT:AD:AF:DP	0/1:22,6:0.21:28
chr17	27896457	rs80029746	T	A	1748.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:41,71:0.63:112
chr17	27898828	rs565977	T	C	3058.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.706;ClippingRankSum=0.000;DB;DP=537;ExcessHet=3.0103;FS=1.194;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.77;ReadPosRankSum=-0.852;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:365,165:0.31:530
chr17	27901537	rs35948647	C	CA	538.73	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:42,22:0.34:64
chr17	27901975	rs550818	A	G	1952.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.579;ClippingRankSum=0.000;DB;DP=463;ExcessHet=3.0103;FS=2.793;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.26;ReadPosRankSum=0.824;SOR=0.960;set=HC	GT:AD:AF:DP	0/1:331,127:0.28:458
chr17	27904322	rs601364	A	G	10298.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:0,352:1.00:352
chr17	27905673	rs563976	A	G	454.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:78,27:0.26:105
chr17	27936346	rs117661862	C	T	4211.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:90,187:0.68:277
chr17	27938424	rs11080107	T	C	539.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr17	27944089	rs11657079	C	T	13179.77	.	AC=1;AF=0.500;AN=2;DB;DP=831;set=Intersection	GT:AD:AF:DP	0/1:259,556:0.68:815
chr17	27949934	rs77991986	G	GC	1042.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	27959903	rs2289629	G	A	5250.77	.	AC=1;AF=0.500;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	0/1:215,242:0.53:457
chr17	28120851	rs2617882	A	C	3053.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:1,115:0.99:116
chr17	28320248	rs4795524	T	A	14619.77	.	AC=2;AF=1.00;AN=2;DB;DP=564;set=Intersection	GT:AD:AF:DP	1/1:0,555:1.00:555
chr17	28323499	rs12944395	A	G	871.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr17	28378221	rs148490262	G	A	7150.77	.	AC=1;AF=0.500;AN=2;DB;DP=634;set=Intersection	GT:AD:AF:DP	0/1:297,334:0.53:631
chr17	28378276	rs11653805	C	T	13064.77	.	AC=2;AF=1.00;AN=2;DB;DP=486;set=Intersection	GT:AD:AF:DP	1/1:0,484:1.00:484
chr17	28381141	rs4074170	C	G	4482.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr17	28386526	rs4075623	A	G	4404.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr17	28386698	.	GA	G	960.73	.	AC=1;AF=0.500;AN=2;DP=112;set=Intersection	GT:AD:AF:DP	0/1:48,49:0.51:97
chr17	28407287	rs11080114	C	T	8255.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr17	28407876	rs7221743	T	G	3371.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr17	28410124	rs12941382	T	C	1515.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr17	28417376	rs8065059	T	C	1481.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr17	28417812	rs118025053	A	C	932.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:57,41:0.42:98
chr17	28499499	rs3764450	T	A	1298.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:50,55:0.52:105
chr17	28549898	rs6354	G	T	3458.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:150,163:0.52:313
chr17	28549978	rs25528	G	T	993.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:43,42:0.49:85
chr17	28576076	rs1050565	T	C	5983.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr17	28612448	rs7342921	G	C	7913.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr17	28618972	rs34774348	T	TCGG	2880.73	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:24,129:0.84:153
chr17	28646057	rs6505173	A	G	5632.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr17	28659010	rs3110095	C	T	2414.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr17	28778720	rs2253256	G	C	4135.77	.	AC=1;AF=0.500;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	0/1:190,190:0.50:380
chr17	28811658	rs5819903	G	GT	597.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.489;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.29;ReadPosRankSum=0.065;SOR=0.819;set=HC	GT:AD:AF:DP	0/1:41,41:0.50:82
chr17	28811834	.	G	GT	338.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.093;ClippingRankSum=0.000;DP=283;ExcessHet=3.0103;FS=1.369;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.45;ReadPosRankSum=-0.065;SOR=0.823;set=HC	GT:AD:AF:DP	0/1:183,51:0.22:234
chr17	28887134	rs111780165	G	A	3481.77	.	AC=1;AF=0.500;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	0/1:214,176:0.45:390
chr17	28890203	rs216455	T	C	1170.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:91,55:0.38:146
chr17	28900708	rs3764416	G	T	475.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr17	28900915	rs58713975	C	G	896.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr17	29051705	rs9903735	C	T	729.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.154;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=2.247;MLEAC=1;MLEAF=0.500;MQ=45.94;MQRankSum=-2.438;QD=10.58;ReadPosRankSum=0.078;SOR=0.384;set=HC	GT:AD:AF:DP	0/1:36,33:0.48:69
chr17	29070478	.	A	C	436.77	.	AC=1;AF=0.500;AN=2;DP=46;set=Intersection	GT:AD:AF:DP	0/1:26,20:0.43:46
chr17	29111368	rs11867457	A	G	3889.77	.	AC=1;AF=0.500;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	0/1:187,184:0.50:371
chr17	29161503	rs11080134	A	G	2067.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:87,92:0.51:179
chr17	29192700	.	AT	A	133.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.527;ClippingRankSum=0.000;DP=128;ExcessHet=3.0103;FS=0.909;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.05;ReadPosRankSum=-0.237;SOR=0.555;set=HC	GT:AD:AF:DP	0/1:93,34:0.27:127
chr17	29206421	rs6505216	G	T	452.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.919;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=1.518;MLEAC=1;MLEAF=0.500;MQ=60.44;MQRankSum=0.383;QD=3.57;ReadPosRankSum=1.083;SOR=0.805;set=HC	GT:AD:AF:DP	0/1:86,41:0.32:127
chr17	29206583	.	A	AT	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.080;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=4.054;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.72;ReadPosRankSum=-0.861;SOR=1.584;set=HC	GT:AD:AF:DP	0/1:21,9:0.30:30
chr17	29221227	rs9898911	A	T	969.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:38,46:0.55:84
chr17	29221277	rs62070652	C	T	299.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:17,13:0.43:30
chr17	29226630	rs28539246	T	A	728.73	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:44,42:0.49:86
chr17	29226652	rs9897628	A	G	708.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:35,31:0.47:66
chr17	29324511	rs184860199	C	T	1437.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:83,69:0.45:152
chr17	29482878	rs2269855	G	A	836.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr17	29483195	rs17885980	G	C	541.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:14,20:0.59:34
chr17	29486152	rs2952976	G	A	10269.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	1/1:0,378:1.00:378
chr17	29496819	rs2905807	C	T	1117.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr17	29508775	rs1801052	G	A	3023.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr17	29508819	rs71142032	A	AT	583.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.570;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=4.137;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=0.000;QD=8.34;ReadPosRankSum=0.963;SOR=1.118;set=HC	GT:AD:AF:DP	0/1:25,45:0.64:70
chr17	29509791	rs2953000	C	T	936.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.58;SOR=6.273;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr17	29545987	rs67472948	A	AT	2955.73	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr17	29546175	rs2905880	T	C	5451.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr17	29553336	rs146836118	GAC	G	488.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.269;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=12.888;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=3.056;QD=4.53;ReadPosRankSum=-0.301;SOR=3.407;set=HC	GT:AD:AF:DP	0/1:74,34:0.31:108
chr17	29563075	.	G	GT	362.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.549;ClippingRankSum=0.000;DP=231;ExcessHet=3.0103;FS=0.757;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=2.734;QD=2.13;ReadPosRankSum=-1.240;SOR=0.769;set=HC	GT:AD:AF:DP	0/1:128,42:0.25:170
chr17	29646032	rs1129506	G	A	16331.77	.	AC=2;AF=1.00;AN=2;DB;DP=616;set=Intersection	GT:AD:AF:DP	1/1:0,609:1.00:609
chr17	29647358	rs3837848	A	AT	632.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.873;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.80;ReadPosRankSum=-2.837;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:41,52:0.56:93
chr17	29647362	rs34004645	A	T	57.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.365;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=0.949;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.56;ReadPosRankSum=0.700;SOR=0.542;set=HC	GT:AD:AF:DP	0/1:81,22:0.21:103
chr17	29653293	rs9894648	T	C	6581.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr17	29654876	rs2285894	T	A	2296.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr17	29663614	.	GTT	G	1062	.	AC=2;AF=1.00;AN=2;BRF=0.17;FR=1.0000;HP=12;HapScore=1;MGOF=23;MMLQ=23;MQ=60.1;NF=15;NR=11;PP=1062;QD=41.1923076923;SC=TGAGTCCCATGTTTTTTTTTT;SbPval=0.23;Source=Platypus;TC=88;TCF=40;TCR=48;TR=26;WE=29663623;WS=29663604;set=Platypus	GT:AD:AF:DP	1/1:62,26:0.30:88
chr17	29663624	rs7406038	TT	AA	860.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.230;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=6.162;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=-1.494;QD=10.01;ReadPosRankSum=-0.414;SOR=0.286;set=HC	GT:AD:AF:DP	0/1:26,60:0.70:86
chr17	29670190	rs7405740	C	G	3503.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr17	29675971	rs2525569	T	A	927.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr17	29679246	rs964288	G	A	3017.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr17	29684553	rs7350943	C	T	1996.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr17	29705947	rs2525574	T	C	15665.77	.	AC=2;AF=1.00;AN=2;DB;DP=609;set=Intersection	GT:AD:AF:DP	1/1:0,597:1.00:597
chr17	29706395	.	TAA	T	103.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.180;ClippingRankSum=-0.000;DP=16;ExcessHet=3.0103;FS=3.256;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.41;ReadPosRankSum=-0.247;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:6,8:0.57:14
chr17	29815385	rs57391434	G	T	1019.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:30,50:0.62:80
chr17	29815404	rs8075239	T	G	3195.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr17	29843695	rs4349207	C	T	532.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:24,25:0.51:49
chr17	29844658	rs3744619	C	G	2474.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:85,108:0.56:193
chr17	29844909	rs3744618	A	G	3530.77	.	AC=1;AF=0.500;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	0/1:172,168:0.49:340
chr17	29848450	rs2301684	G	T	1693.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:72,80:0.53:152
chr17	29848460	rs8066569	G	C	1323.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:62,62:0.50:124
chr17	29850691	rs2074146	G	A	2808.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:182,141:0.44:323
chr17	29850698	rs2074147	G	A	3731.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:130,167:0.56:297
chr17	29852092	rs2023795	A	G	6122.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr17	29855335	rs12602681	G	A	788.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:42,31:0.42:73
chr17	29857264	rs2074152	C	T	1615.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:68,74:0.52:142
chr17	30183663	rs71142094	G	GC	1532.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr17	30183857	rs8068049	T	C	3700.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;MQ=59.96;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr17	30185565	rs9906443	G	A	1627.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr17	30185892	rs11542477	A	G	6124.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr17	30186375	.	C	CGGGGGCGGGGCGGCGCA	493.73	.	AC=2;AF=1.00;AN=2;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.88;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr17	30216514	.	AT	A	59.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.164;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;FS=1.922;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=1.005;QD=2.72;ReadPosRankSum=0.838;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:11,11:0.50:22
chr17	30322674	.	C	CG	10094.73	.	AC=1;AF=0.500;AN=2;DP=717;set=Intersection	GT:AD:AF:DP	0/1:362,329:0.48:691
chr17	30469470	.	CCCG	C,CCCGCCGCCGCCG	1320.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=81;set=Intersection	GT:AF:DP	1/2:0.65,0.35:40
chr17	30509939	rs6505286	C	G	2253.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr17	30519351	rs10615858	CT	C	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.513;ClippingRankSum=-0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=0.623;QD=2.78;ReadPosRankSum=1.256;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:7,8:0.53:15
chr17	30527934	rs140644309	G	A	994.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:53,49:0.48:102
chr17	30593336	rs9889253	C	T	349.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.903;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=1.273;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.45;ReadPosRankSum=0.076;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:18,19:0.51:37
chr17	30632274	rs16967266	G	A	2277.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:110,104:0.49:214
chr17	30643361	rs2344973	A	G	3025.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr17	30659006	rs1019152	T	A	1601.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr17	30665005	rs35677406	T	C	2952.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:144,139:0.49:283
chr17	30687522	rs6505295	G	C	339.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:17,15:0.47:32
chr17	30689814	rs9896320	G	A	142.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:9,7:0.44:16
chr17	30696292	rs2286645	C	T	729.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:31,32:0.51:63
chr17	30791503	rs2302276	C	T	5052.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;ClippingRankSum=0.000;DB;DP=870;ExcessHet=3.0103;FS=2.598;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=-0.715;QD=6.02;ReadPosRankSum=0.887;SOR=0.873;set=HC	GT:AD:AF:DP	0/1:554,285:0.34:839
chr17	30791509	rs2302277	C	G	5386.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.604;ClippingRankSum=0.000;DB;DP=898;ExcessHet=3.0103;FS=1.155;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=-0.734;QD=6.05;ReadPosRankSum=0.088;SOR=0.828;set=HC	GT:AD:AF:DP	0/1:578,313:0.35:891
chr17	30815681	rs8192474	G	A	143.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:23,9:0.28:32
chr17	30980972	rs2249638	G	A	5318.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr17	30981702	.	C	CT	73.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.677;ClippingRankSum=0.000;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.80;ReadPosRankSum=1.892;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:31,10:0.24:41
chr17	31039255	rs11080184	T	C	1735.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:91,85:0.48:176
chr17	31072453	rs6505311	A	G	540.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:29,23:0.44:52
chr17	31082747	rs4548927	T	C	576.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:39,27:0.41:66
chr17	31107845	rs10512439	A	G	1883.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:62,79:0.56:141
chr17	31266427	.	G	GA	87.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.573;ClippingRankSum=0.000;DP=292;ExcessHet=3.0103;FS=0.669;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=2.166;QD=0.32;ReadPosRankSum=1.300;SOR=0.617;set=HC	GT:AD:AF:DP	0/1:225,46:0.17:271
chr17	31318933	rs34817428	A	ACTG	2740.73	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:152,134:0.47:286
chr17	31319024	rs2188953	A	C	2297.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;MQ=60.05;set=Intersection	GT:AD:AF:DP	0/1:96,107:0.53:203
chr17	31319160	rs2346391	T	C	806.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	31323728	rs140981292	A	AG	3711.73	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr17	31324362	.	T	TGTGTGTGTGTAGAG	338.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.472;ClippingRankSum=0.000;DP=179;ExcessHet=3.0103;FS=18.222;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.11;ReadPosRankSum=2.585;SOR=3.888;set=HC	GT:AD:AF:DP	0/1:92,17:0.16:109
chr17	31324657	rs28958	T	C	4362.77	.	AC=1;AF=0.500;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	0/1:202,199:0.50:401
chr17	31324673	rs28957	G	A	4227.77	.	AC=1;AF=0.500;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	0/1:209,203:0.49:412
chr17	31343175	rs3025251	C	T	189.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:9,9:0.50:18
chr17	31344549	rs2074215	T	C	524.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:51,27:0.35:78
chr17	31350741	rs75112067	C	T	2123.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:73,91:0.55:164
chr17	31355227	rs58042873	A	AG	2271.73	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr17	31618732	rs9893935	A	G	5088.77	.	AC=1;AF=0.500;AN=2;DB;DP=468;set=Intersection	GT:AD:AF:DP	0/1:216,245:0.53:461
chr17	31618997	rs112647385	C	A	1157.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:39,47:0.55:86
chr17	32483237	rs2228990	A	G	3693.77	.	AC=1;AF=0.500;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	0/1:181,181:0.50:362
chr17	32483270	rs2228989	C	G	4401.77	.	AC=1;AF=0.500;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	0/1:188,199:0.51:387
chr17	32583132	rs2857657	G	C	1438.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:60,57:0.49:117
chr17	32598942	rs17735770	T	C	704.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:27,34:0.56:61
chr17	32614425	rs3815341	G	A	1028.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:36,42:0.54:78
chr17	32647544	rs3138036	A	G	967.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:38,42:0.53:80
chr17	32647744	rs3138037	T	C	867.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:34,34:0.50:68
chr17	32647831	rs1133763	A	C	2685.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:123,122:0.50:245
chr17	32684389	rs159313	T	C	2827.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:119,132:0.53:251
chr17	32684991	rs2072069	G	A	472.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:21,21:0.50:42
chr17	32688712	rs159271	T	C	1280.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr17	32904480	rs887231	G	A	8040.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr17	32904586	rs887230	C	T	12898.77	.	AC=2;AF=1.00;AN=2;DB;DP=486;set=Intersection	GT:AD:AF:DP	1/1:0,479:1.00:479
chr17	32908064	rs4795938	T	C	10185.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	1/1:0,384:1.00:384
chr17	32908210	rs7218304	T	C	5345.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.40;SOR=1.386;set=HC	GT:AD:AF:DP	1/1:0,151:1.00:151
chr17	32908210	.	TGGAGGGG	CGGAGGGA,CGGAGGGG	1020	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.41;FR=0.5000,0.5000;HP=2;HapScore=2;MGOF=5;MMLQ=24;MQ=60.0;NF=15,35;NR=38,72;PP=1020,709;QD=20.2541108465;SC=CAGGCGCCACTGGAGGGGGTA;SbPval=0.72;Source=Platypus;TC=108;TCF=35;TCR=73;TR=53,107;WE=32908225;WS=32908200;set=Platypus	GT:AF:DP	0/1:0.49:108
chr17	32908217	rs7212426	G	A	1762.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.224;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=4.310;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.96;ReadPosRankSum=-0.918;SOR=1.127;set=HC	GT:AD:AF:DP	0/1:60,76:0.56:136
chr17	32961751	rs2058164	C	A	266.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:35,13:0.27:48
chr17	32965275	.	AC	A	167.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.222;ClippingRankSum=0.000;DP=163;ExcessHet=3.0103;FS=3.160;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=2.195;QD=1.22;ReadPosRankSum=-0.357;SOR=0.414;set=HC	GT:AD:AF:DP	0/1:113,24:0.18:137
chr17	32965285	rs28442132	C	A	1281.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:74,65:0.47:139
chr17	33255293	.	C	CT	56.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.215;ClippingRankSum=0.000;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.93;ReadPosRankSum=1.863;SOR=0.384;set=HC	GT:AD:AF:DP	0/1:48,13:0.21:61
chr17	33269648	rs2230553	C	G	769.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:28,29:0.51:57
chr17	33288363	rs9635769	C	T	2052.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:131,103:0.44:234
chr17	33288433	rs368850951	GA	G	73.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.009;ClippingRankSum=0.000;DB;DP=215;ExcessHet=3.0103;FS=0.752;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=2.168;QD=0.39;ReadPosRankSum=-2.153;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:156,32:0.17:188
chr17	33288882	rs931196	T	G	18011.77	.	AC=2;AF=1.00;AN=2;DB;DP=656;set=Intersection	GT:AD:AF:DP	1/1:0,644:1.00:644
chr17	33307700	rs57311484	GC	G	3808.73	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr17	33309982	rs58611631	C	CT	1460.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.651;ClippingRankSum=0.000;DB;DP=305;ExcessHet=3.0103;FS=0.569;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=0.000;QD=5.35;ReadPosRankSum=0.239;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:148,125:0.46:273
chr17	33433820	rs936656	A	G	1499.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr17	33448818	rs1871892	T	C	24459.77	.	AC=2;AF=1.00;AN=2;DB;DP=919;set=Intersection	GT:AD:AF:DP	1/1:0,912:1.00:912
chr17	33454415	rs2306508	C	A	1903.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:120,91:0.43:211
chr17	33463568	rs3736143	C	T	247.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:26,13:0.33:39
chr17	33464864	rs7215209	C	T	3433.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr17	33469279	rs1471615	G	C	7138.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr17	33478185	rs4796042	C	G	837.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:59,43:0.42:102
chr17	33482522	rs11869662	G	A	1055.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.951;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=4.629;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.73;ReadPosRankSum=1.591;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:67,54:0.45:121
chr17	33490991	rs8079654	G	A	1894.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:59,80:0.58:139
chr17	33497050	rs8066133	C	T	5062.77	.	AC=1;AF=0.500;AN=2;DB;DP=503;set=Intersection	GT:AD:AF:DP	0/1:258,240:0.48:498
chr17	33497331	rs7213921	A	G	1142.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr17	33501432	rs1384220	C	T	2522.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr17	33502878	rs11658042	C	T	765.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:27,29:0.52:56
chr17	33502937	rs11657816	G	A	1484.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:51,65:0.56:116
chr17	33504194	rs78278095	T	C	1599.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:96,72:0.43:168
chr17	33504716	rs77782351	T	C	911.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:52,43:0.45:95
chr17	33504809	rs4795065	C	T	1225.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr17	33510656	rs8074705	A	G	522.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:30,24:0.44:54
chr17	33513649	rs3744366	A	G	1532.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:45,64:0.59:109
chr17	33591987	rs11080334	T	G	6868.77	.	AC=1;AF=0.500;AN=2;DB;DP=633;set=Intersection	GT:AD:AF:DP	0/1:310,300:0.49:610
chr17	33592591	rs11651240	C	T	4040.77	.	AC=1;AF=0.500;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	0/1:220,198:0.47:418
chr17	33680807	rs9897352	G	A	2194.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.99;QD=32.28;SOR=8.468;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr17	33680840	rs28571667	T	C	4091.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr17	33689926	rs4796077	T	C	22954.77	.	AC=2;AF=1.00;AN=2;DB;DP=864;set=Intersection	GT:AD:AF:DP	1/1:0,845:1.00:845
chr17	33690466	rs12453150	C	A	16949.77	.	AC=2;AF=1.00;AN=2;DB;DP=603;set=Intersection	GT:AD:AF:DP	1/1:1,590:1.00:591
chr17	33690863	rs4796078	G	T	4878.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:1,182:0.99:183
chr17	33748939	rs2671817	G	A	3741.77	.	AC=1;AF=0.500;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	0/1:211,175:0.45:386
chr17	33749546	rs2586514	A	G	7558.77	.	AC=1;AF=0.500;AN=2;DB;DP=749;set=Intersection	GT:AD:AF:DP	0/1:352,380:0.52:732
chr17	33749919	rs1849733	A	C	10239.77	.	AC=1;AF=0.500;AN=2;DB;DP=992;set=Intersection	GT:AD:AF:DP	0/1:493,494:0.50:987
chr17	33769034	rs62078110	G	A	1299.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.357;ClippingRankSum=0.000;DB;DP=267;ExcessHet=3.0103;FS=18.137;MLEAC=1;MLEAF=0.500;MQ=48.35;MQRankSum=-7.136;QD=4.87;ReadPosRankSum=2.022;SOR=0.233;set=HC	GT:AD:AF:DP	0/1:181,86:0.32:267
chr17	33772689	rs12943866	T	C	4722.77	.	AC=1;AF=0.500;AN=2;DB;DP=462;set=Intersection	GT:AD:AF:DP	0/1:240,219:0.48:459
chr17	33802156	rs3744372	T	G	5066.77	.	AC=1;AF=0.500;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	0/1:209,230:0.52:439
chr17	33805150	rs2304968	T	C	3780.77	.	AC=1;AF=0.500;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	0/1:197,181:0.48:378
chr17	33805180	rs2304967	G	C	2981.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:181,144:0.44:325
chr17	33806332	rs8066132	C	T	3948.77	.	AC=1;AF=0.500;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	0/1:211,183:0.46:394
chr17	33806812	rs12451876	C	T	5921.77	.	AC=1;AF=0.500;AN=2;DB;DP=600;set=Intersection	GT:AD:AF:DP	0/1:307,280:0.48:587
chr17	33807250	rs9905892	T	A	1438.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:70,60:0.46:130
chr17	33814735	rs10626701	G	GAA	8279.73	.	AC=1;AF=0.500;AN=2;DB;DP=505;set=Intersection	GT:AD:AF:DP	0/1:277,223:0.45:500
chr17	33881769	rs66959492	TA	T	679.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.808;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=5.409;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=1.538;QD=7.81;ReadPosRankSum=0.972;SOR=1.445;set=HC	GT:AD:AF:DP	0/1:22,65:0.75:87
chr17	33921160	rs225305	C	T	1175.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr17	33954561	rs75605195	A	G	3617.77	.	AC=1;AF=0.500;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	0/1:217,175:0.45:392
chr17	33963611	rs11345348	AT	A	3100.73	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr17	33968871	rs225270	A	T	4997.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr17	34067892	rs12944858	G	A	827.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:19,33:0.63:52
chr17	34077232	rs11654604	G	A	9658.77	.	AC=1;AF=0.500;AN=2;DB;DP=961;set=Intersection	GT:AD:AF:DP	0/1:488,466:0.49:954
chr17	34077428	rs11650416	A	C	2278.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:105,96:0.48:201
chr17	34090916	.	A	AAAAT	1274.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.597;ClippingRankSum=0.000;DP=75;ExcessHet=3.0103;FS=1.033;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.36;ReadPosRankSum=0.216;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:24,33:0.58:57
chr17	34100350	rs58543174	G	GC	22348.73	.	AC=2;AF=1.00;AN=2;DB;DP=568;set=Intersection	GT:AD:AF:DP	1/1:0,559:1.00:559
chr17	34151245	rs35907284	C	CT	107.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.346;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=1.388;QD=2.84;ReadPosRankSum=0.923;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:25,13:0.34:38
chr17	34325532	rs2075746	T	C	1554.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:79,66:0.46:145
chr17	34328461	rs854625	A	G	6251.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr17	34340161	rs1734953	T	A	7204.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:4,296:0.99:300
chr17	34340284	rs1003645	C	T	11818.77	.	AC=2;AF=1.00;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	1/1:0,440:1.00:440
chr17	34340834	rs11657605	G	A	2728.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:146,130:0.47:276
chr17	34341082	rs1719204	C	G	1641.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr17	34416665	rs1719133	A	G	17346.77	.	AC=2;AF=1.00;AN=2;DB;DP=640;set=Intersection	GT:AD:AF:DP	1/1:0,637:1.00:637
chr17	34431287	rs1049750	G	T	10601.77	.	AC=2;AF=1.00;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	1/1:0,383:1.00:383
chr17	34431961	rs1719146	T	C	810.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	34432125	rs1719147	A	G	1116.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:63,53:0.46:116
chr17	34641466	rs148287175	G	A	5725.77	.	AC=1;AF=0.500;AN=2;DB;DP=615;set=Intersection	GT:AD:AF:DP	0/1:324,290:0.47:614
chr17	34848874	rs2306589	T	C	2843.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr17	34854280	rs2306590	G	A	12853.77	.	AC=2;AF=1.00;AN=2;DB;DP=479;set=Intersection	GT:AD:AF:DP	1/1:2,470:1.00:472
chr17	34865131	rs17560870	A	G	1431.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr17	34866546	rs2306593	C	T	2101.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr17	34867415	rs34476742	A	AGT	1628.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr17	34869150	rs6607296	C	A	2863.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr17	34916879	rs8068351	T	C	377.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr17	34923770	.	CT	C	88.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.176;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=11.883;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.71;ReadPosRankSum=0.467;SOR=0.027;set=HC	GT:AD:AF:DP	0/1:35,17:0.33:52
chr17	34935878	rs2074103	C	A	10488.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	1/1:0,382:1.00:382
chr17	34942595	rs1106908	G	A	2655.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.18;SOR=2.435;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr17	34943347	rs11367622	CT	C	491.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.515;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=1.906;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=0.758;QD=8.33;ReadPosRankSum=-1.056;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:14,45:0.76:59
chr17	34943719	rs3744593	C	T	9595.77	.	AC=2;AF=1.00;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	1/1:1,348:1.00:349
chr17	34951327	rs2285639	C	T	2378.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr17	34956585	rs377424786	CCA	C	19324.73	.	AC=2;AF=1.00;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	1/1:0,434:1.00:434
chr17	35294340	rs113265097	C	CA	425.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.554;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.982;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.68;ReadPosRankSum=1.405;SOR=0.833;set=HC	GT:AD:AF:DP	0/1:53,38:0.42:91
chr17	35300494	.	G	GA	106.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.114;ClippingRankSum=0.000;DP=233;ExcessHet=3.0103;FS=1.888;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=5.346;QD=0.58;ReadPosRankSum=-0.911;SOR=0.994;set=HC	GT:AD:AF:DP	0/1:147,38:0.21:185
chr17	35306312	rs2306658	G	C	947.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:50,44:0.47:94
chr17	35470230	rs3815059	A	T	3071.77	.	AC=1;AF=0.500;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	0/1:183,153:0.46:336
chr17	35478362	rs1470452	T	C	10958.77	.	AC=2;AF=1.00;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	1/1:0,420:1.00:420
chr17	35486486	rs9789070	C	T	1529.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.24;SOR=2.670;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr17	35486486	.	CAGACAAAGA	TAGACAAAGA,TAGACAAAGG	367	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.24;FR=0.5000,0.5000;HP=2;HapScore=2;MGOF=1;MMLQ=28;MQ=60.0;NF=7,5;NR=30,16;PP=208,367;QD=6.5613841229;SC=ACAATAGTTACAGACAAAGAC;SbPval=0.55;Source=Platypus;TC=37;TCF=7;TCR=30;TR=37,21;WE=35486503;WS=35486476;set=Platypus	GT:AF:DP	0/1:1.00:37
chr17	35486495	rs17848779	A	G	560.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.363;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=1.657;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.16;ReadPosRankSum=0.300;SOR=0.302;set=HC	GT:AD:AF:DP	0/1:14,23:0.62:37
chr17	35549275	rs2305099	T	C	2247.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:110,104:0.49:214
chr17	35550158	rs12603097	C	T	446.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:8,13:0.62:21
chr17	35550179	rs12603098	C	T	515.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:15,17:0.53:32
chr17	35550448	rs2305097	C	A	592.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:18,27:0.60:45
chr17	35562546	rs2278679	C	T	698.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:28,31:0.53:59
chr17	35581887	rs144469510	TTA	T	834.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.764;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=0.793;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.000;QD=5.64;ReadPosRankSum=2.560;SOR=0.800;set=HC	GT:AD:AF:DP	0/1:102,46:0.31:148
chr17	35608781	rs72010031	CCT	C	1897.73	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:63,55:0.47:118
chr17	35608889	rs1519091	G	A	3779.77	.	AC=1;AF=0.500;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	0/1:232,191:0.45:423
chr17	35609746	rs2252757	G	A	1413.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:48,55:0.53:103
chr17	35620826	rs17848794	C	T	1717.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:72,76:0.51:148
chr17	35632979	rs2542660	C	A	2900.77	.	AC=1;AF=0.500;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	0/1:199,145:0.42:344
chr17	35696804	rs58654829	G	A	1147.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.897;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=2.019;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.63;ReadPosRankSum=-2.070;SOR=0.940;set=HC	GT:AD:AF:DP	0/1:39,30:0.43:69
chr17	35696820	rs147333574	AAAAG	A	1104.73	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:39,30:0.43:69
chr17	35743010	rs1714987	C	G	2263.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:138,113:0.45:251
chr17	35766475	rs72828246	A	G	1590.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:63,64:0.50:127
chr17	35771468	rs7211875	C	T	4935.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr17	35783812	rs7501983	A	G	772.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:45,38:0.46:83
chr17	35783852	rs34822650	C	CT	124.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.229;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=2.629;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.56;ReadPosRankSum=1.798;SOR=1.880;set=HC	GT:AD:AF:DP	0/1:8,11:0.58:19
chr17	35818739	rs72377203	TTGTGTG	T,TTGTG	737.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.013;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=1.958;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.18;MQRankSum=0.441;QD=16.39;ReadPosRankSum=-0.396;SOR=1.347;set=HC	GT:AD:AF:DP	1/2:7,27,11:0.60,0.24:45
chr17	35825459	rs142934801	TA	T	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.284;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.903;QD=0.49;ReadPosRankSum=-0.830;SOR=0.579;set=HC	GT:AD:AF:DP	0/1:85,21:0.20:106
chr17	35898342	rs2074409	G	T	238.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:10,10:0.50:20
chr17	35899141	rs1034686	T	A	2602.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:102,116:0.53:218
chr17	35900732	.	CTTT	C	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.289;ClippingRankSum=0.000;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.05;ReadPosRankSum=2.177;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:30,7:0.19:37
chr17	35902225	rs3110623	C	G	1898.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:109,84:0.44:193
chr17	35936594	rs11654048	T	C	821.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:30,35:0.54:65
chr17	35956263	rs4795207	T	C	7860.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr17	35979746	.	G	GA	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.634;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=6.526;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.08;ReadPosRankSum=1.555;SOR=2.147;set=HC	GT:AD:AF:DP	0/1:36,12:0.25:48
chr17	35984410	rs7216445	T	C	3053.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr17	35988672	rs7224513	C	T	7379.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.55;SOR=0.814;set=HC	GT:AD:AF:DP	1/1:0,278:1.00:278
chr17	35993548	rs35952225	T	TG	130.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.940;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=4.379;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.84;ReadPosRankSum=-0.332;SOR=0.577;set=HC	GT:AD:AF:DP	0/1:20,7:0.26:27
chr17	35995638	rs4622555	T	A	4293.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr17	36003275	rs3813911	T	A	2119.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr17	36003359	rs3813910	A	G	7809.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr17	36003551	rs72830448	G	A	1762.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:122,89:0.42:211
chr17	36047275	rs1800929	C	T	9420.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.94;SOR=1.388;set=HC	GT:AD:AF:DP	1/1:0,255:1.00:255
chr17	36047275	.	CG	TG,TT	1712	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.45;FR=0.5000,0.5000;HP=2;HapScore=2;MGOF=2;MMLQ=28;MQ=60.0;NF=118,52;NR=57,28;PP=1712,1229;QD=9.98154978598;SC=TCGCAGGTGCCGGTCAGGTCA;SbPval=0.61;Source=Platypus;TC=181;TCF=119;TCR=62;TR=175,80;WE=36047284;WS=36047265;set=Platypus	GT:AF:DP	0/1:0.97:181
chr17	36047276	rs2229295	G	T	2719.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.319;ClippingRankSum=0.000;DB;DP=273;ExcessHet=3.0103;FS=1.519;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.22;ReadPosRankSum=-0.954;SOR=0.596;set=HC	GT:AD:AF:DP	0/1:136,130:0.49:266
chr17	36047417	rs3110641	A	G	3154.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:169,148:0.47:317
chr17	36058980	rs2269843	C	T	493.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:20,21:0.51:41
chr17	36059385	rs12938438	C	G	859.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:23,34:0.60:57
chr17	36061297	rs2074429	C	T	362.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:10,16:0.62:26
chr17	36233930	rs2677184	G	A	8719.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,327:1.00:327
chr17	36234106	rs2677185	G	A	797.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr17	36352408	rs11407739	G	GT,GTT	13371.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=856;set=Intersection	GT:AF:DP	1/2:0.68,0.20:814
chr17	36352489	rs4796259	A	C	2759.77	.	AC=1;AF=0.500;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	0/1:307,154:0.33:461
chr17	36352537	rs62074773	A	G	4077.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.61;QD=31.86;SOR=6.059;set=HC	GT:AD:AF:DP	1/1:0,128:1.00:128
chr17	36352572	rs62074774	C	T	1279.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=37.23;QD=31.21;SOR=7.476;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr17	36353528	.	T	C	59.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.056;ClippingRankSum=0.000;DP=120;ExcessHet=3.0103;FS=1.355;MLEAC=1;MLEAF=0.500;MQ=48.91;MQRankSum=-1.061;QD=0.50;ReadPosRankSum=0.675;SOR=1.010;set=HC	GT:AD:AF:DP	0/1:105,14:0.12:119
chr17	36353560	rs111638343	C	T	4174.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.62;QD=30.92;SOR=1.540;set=HC	GT:AD:AF:DP	1/1:0,135:1.00:135
chr17	36353761	rs62074778	C	T	5153.77	.	AC=1;AF=0.500;AN=2;DB;DP=837;set=Intersection	GT:AD:AF:DP	0/1:547,287:0.34:834
chr17	36357280	rs149632022	TA	T	1123.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.328;ClippingRankSum=0.000;DB;DP=1076;ExcessHet=3.0103;FS=0.622;MLEAC=1;MLEAF=0.500;MQ=57.80;MQRankSum=-13.671;QD=1.34;ReadPosRankSum=0.113;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:622,216:0.26:838
chr17	36357295	rs79239780	A	G	3743.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.108;ClippingRankSum=0.000;DB;DP=899;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.28;MQRankSum=-0.310;QD=4.42;ReadPosRankSum=0.179;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:577,270:0.32:847
chr17	36357835	rs1848308	G	A	3704.77	.	AC=1;AF=0.500;AN=2;DB;DP=748;set=Intersection	GT:AD:AF:DP	0/1:524,224:0.30:748
chr17	36358171	rs181300549	A	C	5706.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.317;ClippingRankSum=0.000;DB;DP=530;ExcessHet=3.0103;FS=3.219;MLEAC=1;MLEAF=0.500;MQ=59.26;MQRankSum=5.102;QD=10.81;ReadPosRankSum=-1.244;SOR=0.831;set=HC	GT:AD:AF:DP	0/1:249,279:0.53:528
chr17	36358189	rs5820175	GATATATATATAT	G,GATATATATAT	3011.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.559;ClippingRankSum=0.000;DB;DP=351;ExcessHet=3.0103;FS=7.295;MLEAC=1,1;MLEAF=0.500,0.500;MQ=58.57;MQRankSum=-3.407;QD=16.28;ReadPosRankSum=1.363;SOR=0.300;set=HC	GT:AD:AF:DP	1/2:29,80,76:0.43,0.41:185
chr17	36358228	.	ACTC	A	2997	.	AC=1;AF=0.500;AN=2;FR=0.5000;HP=1;HapScore=1;MGOF=78;MMLQ=21;NF=38;NR=127;PP=2997;QD=20;SC=ATATATATATACTCTTGCATC;SbPval=0.27;Source=Platypus;TC=273;TCF=54;TCR=219;TR=165;WE=36358238;WS=36358218;set=Platypus	GT:AD:AF:DP	0/1:108,165:0.60:273
chr17	36358847	rs77355093	T	A	56577.77	.	AC=2;AF=1.00;AN=2;DB;DP=2059;set=Intersection	GT:AD:AF:DP	1/1:0,2037:1.00:2037
chr17	36361992	rs201942294	C	T	5711.77	.	AC=1;AF=0.500;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	0/1:103,244:0.70:347
chr17	36374963	rs11389346	TA	T	1888.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.620;ClippingRankSum=0.000;DB;DP=312;ExcessHet=3.0103;FS=6.492;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=0.287;QD=6.49;ReadPosRankSum=1.364;SOR=1.265;set=HC	GT:AD:AF:DP	0/1:118,173:0.59:291
chr17	36384810	rs142086381	A	G	1364.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:178,75:0.30:253
chr17	36384868	rs71252892	C	G	2265.77	.	AC=1;AF=0.500;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	0/1:287,126:0.31:413
chr17	36398156	rs147730015	ACACACACACC	A	1830.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.913;ClippingRankSum=0.000;DB;DP=969;ExcessHet=3.0103;FS=3.452;MLEAC=1;MLEAF=0.500;MQ=55.89;MQRankSum=-0.630;QD=1.98;ReadPosRankSum=8.075;SOR=0.954;set=HC	GT:AD:AF:DP	0/1:762,162:0.18:924
chr17	36398401	.	C	T	318.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.128;ClippingRankSum=0.000;DP=337;ExcessHet=3.0103;FS=0.596;MLEAC=1;MLEAF=0.500;MQ=54.56;MQRankSum=-1.169;QD=0.95;ReadPosRankSum=0.709;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:286,50:0.15:336
chr17	36474721	.	C	CT	300.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.633;ClippingRankSum=0.000;DP=509;ExcessHet=3.0103;FS=1.186;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=3.725;QD=0.83;ReadPosRankSum=-1.069;SOR=0.581;set=HC	GT:AD:AF:DP	0/1:299,62:0.17:361
chr17	36552190	rs55687042	A	G	4458.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:70,197:0.74:267
chr17	36584628	.	G	GGGC	627.73	.	AC=2;AF=1.00;AN=2;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr17	36614524	rs16965349	G	A	4253.77	.	AC=1;AF=0.500;AN=2;DB;DP=757;set=Intersection	GT:AD:AF:DP	0/1:503,245:0.33:748
chr17	36614563	rs16965350	C	T	13397.77	.	AC=2;AF=1.00;AN=2;DB;DP=492;set=Intersection	GT:AD:AF:DP	1/1:1,487:1.00:488
chr17	36617210	rs9898977	A	G	21126.77	.	AC=2;AF=1.00;AN=2;DB;DP=813;set=Intersection	GT:AD:AF:DP	1/1:0,806:1.00:806
chr17	36638179	rs144390029	G	A	1325.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr17	36638388	rs11867891	A	G	2989.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;MQ=59.96;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr17	36638695	rs139165577	G	T	6575.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:2,262:0.99:264
chr17	36642473	rs71138626	CT	C	1983.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.134;ClippingRankSum=0.000;DB;DP=251;ExcessHet=3.0103;FS=2.505;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=1.094;QD=10.12;ReadPosRankSum=-1.734;SOR=0.974;set=HC	GT:AD:AF:DP	0/1:45,151:0.77:196
chr17	36646291	rs12937928	A	G	12513.77	.	AC=2;AF=1.00;AN=2;DB;DP=486;set=Intersection	GT:AD:AF:DP	1/1:0,467:1.00:467
chr17	36646386	rs9891156	A	G	10739.77	.	AC=2;AF=1.00;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	1/1:0,391:1.00:391
chr17	36666551	rs62074752	T	C	7922.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr17	36709027	rs376938284	C	T	9430.77	.	AC=1;AF=0.500;AN=2;DB;DP=873;set=Intersection	GT:AD:AF:DP	0/1:423,434:0.51:857
chr17	36718610	rs6503709	T	A	1194.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:84,64:0.43:148
chr17	36734700	rs7503695	T	C	2771.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:71,73:0.51:144
chr17	36734706	rs144253512	CAGCCGG	C	2731.73	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:85,74:0.47:159
chr17	36760753	rs12952883	G	T	1686.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:77,83:0.52:160
chr17	36760878	rs62077547	C	T	381.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:50,22:0.31:72
chr17	36861983	rs17855918	T	C	5814.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr17	36889466	rs5820264	G	GCCTGC	7227.73	.	AC=1;AF=0.500;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	0/1:202,192:0.49:394
chr17	36894839	rs1138349	G	A	4723.77	.	AC=1;AF=0.500;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	0/1:219,228:0.51:447
chr17	36895206	rs2075056	A	G	403.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:32,19:0.37:51
chr17	36896746	rs12601476	T	C	3352.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr17	36906480	rs228271	G	A	1405.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:57,57:0.50:114
chr17	36909061	rs228274	A	G	5381.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr17	36918551	rs228280	G	T	660.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:31,27:0.47:58
chr17	36926731	rs228289	T	G	2051.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:103,104:0.50:207
chr17	36926767	rs228290	G	A	1861.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:93,91:0.49:184
chr17	36927690	rs25540	C	CTAAG	1896.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr17	36932200	rs228293	C	G	2302.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.09;SOR=1.450;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr17	36932233	.	C	CT	156.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.327;ClippingRankSum=0.000;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.54;ReadPosRankSum=0.301;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:79,23:0.23:102
chr17	36932891	rs228294	A	G	1531.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.96;SOR=1.217;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr17	36962670	rs228249	A	G	3133.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:127,147:0.54:274
chr17	36993655	rs645686	T	C	2164.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr17	36997288	rs595306	T	C	903.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	36997503	rs61752602	T	C	4438.77	.	AC=1;AF=0.500;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	0/1:223,216:0.49:439
chr17	36997679	rs597234	G	A	2317.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:122,104:0.46:226
chr17	37010150	rs923370	G	A	656.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:23,26:0.53:49
chr17	37054772	rs1130638	C	T	8027.77	.	AC=1;AF=0.500;AN=2;DB;DP=853;set=Intersection	GT:AD:AF:DP	0/1:449,397:0.47:846
chr17	37054884	rs2286883	A	G	5135.77	.	AC=1;AF=0.500;AN=2;DB;DP=451;set=Intersection	GT:AD:AF:DP	0/1:213,228:0.52:441
chr17	37055077	rs17590541	G	A	2647.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:135,125:0.48:260
chr17	37070658	rs525989	A	G	1873.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr17	37070737	rs525767	A	G	513.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr17	37071189	rs2241009	C	T	3539.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr17	37075286	rs144614922	A	AGGGCGAGGCCCGTGG	30968.73	.	AC=2;AF=1.00;AN=2;DB;DP=790;MQ=60.15;set=Intersection	GT:AD:AF:DP	1/1:0,686:1.00:686
chr17	37076331	rs646097	G	A	1595.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr17	37101101	.	A	ATGTGTGTGTGTGTGTGTG	350.74	.	AC=2;AF=1.00;AN=2;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr17	37101380	rs9906595	T	C	8079.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr17	37224288	rs4405583	G	A	1052.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr17	37228765	rs9907595	A	G	4409.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr17	37234111	rs3744078	G	A	1756.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr17	37239671	rs9891236	A	G	3356.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr17	37243927	rs12602945	A	G	8698.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr17	37244004	rs12600774	G	A	4542.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr17	37253064	rs4795348	T	G	7570.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr17	37253316	rs4795349	G	A	4314.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr17	37264070	rs145472069	TCTC	T	5282.73	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr17	37307519	rs71383370	G	T	460.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:27,21:0.44:48
chr17	37308618	rs3025193	A	G	131.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:20,9:0.31:29
chr17	37316818	rs16521	G	A	2530.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:109,117:0.52:226
chr17	37316988	rs16522	T	C	1464.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:53,69:0.57:122
chr17	37317328	rs750410	T	C	1098.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:35,41:0.54:76
chr17	37317436	rs35170694	G	A	2820.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:202,146:0.42:348
chr17	37317636	rs34799012	G	C	770.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:59,39:0.40:98
chr17	37317672	rs511163	C	G	1961.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr17	37319029	rs544198	T	G	4949.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr17	37319065	rs657672	C	T	1092.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:65,55:0.46:120
chr17	37319103	rs657723	T	C	2047.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr17	37321538	rs520054	G	A	3120.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr17	37322080	rs16527	T	C	11366.77	.	AC=2;AF=1.00;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	1/1:0,399:1.00:399
chr17	37332036	rs529955	A	G	2419.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.19;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,89:1.00:89
chr17	37334243	rs3744353	G	A	2169.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:107,104:0.49:211
chr17	37340927	rs2285837	T	C	4286.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:138,182:0.57:320
chr17	37341207	rs35506760	C	T	1764.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:73,70:0.49:143
chr17	37341235	rs2301775	A	G	5110.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:1,164:0.99:165
chr17	37349655	rs16531	T	C	20833.77	.	AC=2;AF=1.00;AN=2;DB;DP=819;set=Intersection	GT:AD:AF:DP	1/1:1,808:1.00:809
chr17	37349710	rs16532	C	G	18360.77	.	AC=2;AF=1.00;AN=2;DB;DP=685;set=Intersection	GT:AD:AF:DP	1/1:0,680:1.00:680
chr17	37351041	rs16535	G	A	1341.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr17	37357653	.	C	CT	286.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.813;ClippingRankSum=0.000;DP=420;ExcessHet=3.0103;FS=0.576;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=2.385;QD=1.07;ReadPosRankSum=-0.935;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:209,59:0.22:268
chr17	37359216	rs72823347	C	T	2365.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:79,93:0.54:172
chr17	37369925	.	CT	C	150.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.714;ClippingRankSum=0.000;DP=94;ExcessHet=3.0103;FS=6.805;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.19;ReadPosRankSum=0.024;SOR=0.113;set=HC	GT:AD:AF:DP	0/1:15,21:0.58:36
chr17	37371141	rs8070891	G	C	21908.77	.	AC=2;AF=1.00;AN=2;DB;DP=797;set=Intersection	GT:AD:AF:DP	1/1:0,791:1.00:791
chr17	37371161	rs57363360	C	T	10910.77	.	AC=1;AF=0.500;AN=2;DB;DP=998;set=Intersection	GT:AD:AF:DP	0/1:487,503:0.51:990
chr17	37381851	rs35137197	G	C	2345.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:75,98:0.57:173
chr17	37396201	rs34473775	G	T	7225.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr17	37396523	rs34183032	CT	C	151.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.178;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=4.632;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.07;ReadPosRankSum=-1.870;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:8,17:0.68:25
chr17	37399364	rs2338795	T	G	1683.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr17	37399379	rs2879258	G	T	2082.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr17	37400091	rs10639842	C	CA	307.75	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.710;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=0.635;QD=7.69;ReadPosRankSum=-1.360;SOR=0.968;set=HC	GT:AD:AF:DP	0/1:10,30:0.75:40
chr17	37401051	rs11078895	A	G	2443.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr17	37410700	rs752314	C	T	1127.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr17	37410892	rs2879259	C	G	10027.77	.	AC=2;AF=1.00;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	1/1:0,373:1.00:373
chr17	37417575	rs3744348	C	G	2625.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr17	37420372	rs80227840	A	G	1154.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.536;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=6.481;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.87;ReadPosRankSum=-0.840;SOR=1.313;set=HC	GT:AD:AF:DP	0/1:65,52:0.44:117
chr17	37421767	rs2061338	T	C	1425.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:1,58:0.98:59
chr17	37425238	rs1966916	T	G	805.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr17	37425262	rs1966915	A	C	780.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr17	37427114	rs11307198	TA	T	1114.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.307;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=5.173;MLEAC=1;MLEAF=0.500;MQ=60.56;MQRankSum=1.827;QD=8.99;ReadPosRankSum=-0.364;SOR=1.386;set=HC	GT:AD:AF:DP	0/1:31,93:0.75:124
chr17	37580140	.	C	CT	236.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.481;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.77;ReadPosRankSum=-0.721;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:21,20:0.49:41
chr17	37580203	rs7405667	T	C	743.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	37587534	rs35691977	CT	C	1472.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.300;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=5.330;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=0.533;QD=11.78;ReadPosRankSum=0.700;SOR=0.201;set=HC	GT:AD:AF:DP	0/1:23,102:0.82:125
chr17	37657460	rs11406230	C	CT	1235.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.118;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=2.213;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.000;QD=6.98;ReadPosRankSum=1.593;SOR=0.902;set=HC	GT:AD:AF:DP	0/1:96,81:0.46:177
chr17	37671910	rs8070799	G	A	2700.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr17	37783787	rs3751903	C	G	9666.77	.	AC=2;AF=1.00;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	1/1:0,353:1.00:353
chr17	37814080	rs1877031	G	A	12997.77	.	AC=2;AF=1.00;AN=2;DB;DP=489;set=Intersection	GT:AD:AF:DP	1/1:1,479:1.00:480
chr17	37815899	rs11658786	G	A	8678.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr17	37821435	rs931992	G	T	1326.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr17	37822311	rs1053651	A	C	13300.77	.	AC=2;AF=1.00;AN=2;DB;DP=479;set=Intersection	GT:AD:AF:DP	1/1:0,478:1.00:478
chr17	37829129	rs2247862	A	G	7036.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:1,253:1.00:254
chr17	37830447	rs2934956	T	A	2933.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr17	37830900	rs2941504	A	G	9347.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:0,344:1.00:344
chr17	37831035	rs1565922	A	G	4015.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr17	37866005	rs1810132	C	T	20985.77	.	AC=2;AF=1.00;AN=2;DB;DP=791;set=Intersection	GT:AD:AF:DP	1/1:2,783:1.00:785
chr17	37868715	rs4252627	C	T	3447.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr17	37879588	rs1136201	A	G	2074.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:156,112:0.42:268
chr17	37879762	rs903506	G	A	11379.77	.	AC=2;AF=1.00;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	1/1:0,428:1.00:428
chr17	37884037	rs1058808	C	G	12352.77	.	AC=2;AF=1.00;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	1/1:0,421:1.00:421
chr17	37898543	rs2952142	T	C	17605.77	.	AC=2;AF=1.00;AN=2;DB;DP=670;set=Intersection	GT:AD:AF:DP	1/1:0,661:1.00:661
chr17	37898641	.	G	C	4452.77	.	AC=1;AF=0.500;AN=2;DP=410;set=Intersection	GT:AD:AF:DP	0/1:207,197:0.49:404
chr17	37902475	rs201465329	C	T	2374.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:101,111:0.52:212
chr17	37902887	rs150443878	GAAAAAGAAAAAGA	G	6693.73	.	AC=2;AF=1.00;AN=2;DB;DP=164;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.95;QD=43.19;SOR=2.380;set=HC	GT:AD:AF:DP	1/1:0,155:1.00:155
chr17	37921899	rs2952141	C	T	1212.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr17	37922259	rs907092	G	A	17938.77	.	AC=2;AF=1.00;AN=2;DB;DP=679;set=Intersection	GT:AD:AF:DP	1/1:0,663:1.00:663
chr17	37985801	rs3816470	A	G	2974.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr17	38020419	rs1453559	T	C	6015.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr17	38024626	rs11557466	C	T	6223.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr17	38028634	rs11557467	G	T	4020.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr17	38031674	rs10852935	C	T	12612.77	.	AC=2;AF=1.00;AN=2;DB;DP=479;set=Intersection	GT:AD:AF:DP	1/1:2,469:1.00:471
chr17	38031714	rs10852936	C	T	6666.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:1,242:1.00:243
chr17	38062196	rs2305480	G	A	8915.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:0,319:1.00:319
chr17	38062217	rs2305479	C	T	10541.77	.	AC=2;AF=1.00;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	1/1:2,376:0.99:378
chr17	38063381	rs883770	C	T	1296.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr17	38064405	rs11078927	C	T	16826.77	.	AC=2;AF=1.00;AN=2;DB;DP=637;set=Intersection	GT:AD:AF:DP	1/1:0,628:1.00:628
chr17	38064469	rs11078928	T	C	18896.77	.	AC=2;AF=1.00;AN=2;DB;DP=714;set=Intersection	GT:AD:AF:DP	1/1:0,703:1.00:703
chr17	38066240	rs2290400	T	C	2004.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr17	38066267	rs1008723	G	T	1371.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr17	38101140	rs377232669	TTC	T	155.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.221;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=3.900;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=2.716;QD=1.18;ReadPosRankSum=0.530;SOR=0.076;set=HC	GT:AD:AF:DP	0/1:116,16:0.12:132
chr17	38122680	rs7212938	G	T	4817.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.02;SOR=2.179;set=HC	GT:AD:AF:DP	1/1:0,112:1.00:112
chr17	38122686	rs7212944	G	A	4662.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.71;SOR=2.397;set=HC	GT:AD:AF:DP	1/1:0,102:1.00:102
chr17	38122708	rs9914973	T	C	1993.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr17	38126911	rs10531136	AACACACAC	A,AAC	1694.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=87;set=Intersection	GT:AF:DP	1/2:0.20,0.74:69
chr17	38127713	rs3916061	A	G	5877.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr17	38128584	rs5820314	A	AG	2559.73	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr17	38128765	rs8077456	G	C	9005.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:0,334:1.00:334
chr17	38137364	rs3087852	G	A	4039.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr17	38140524	rs3816471	T	C	2614.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr17	38142677	rs3816472	A	C	2313.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:2,76:0.97:78
chr17	38145088	rs9915252	C	G	2051.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr17	38146482	rs11405679	C	CT	1489.50	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.946;ClippingRankSum=0.000;DB;DP=240;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=0.887;QD=9.93;ReadPosRankSum=-0.011;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:40,110:0.73:150
chr17	38146542	rs3744245	C	G	2185.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr17	38152304	rs8071037	A	T	745.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr17	38152373	rs35244421	CA	C	459.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.589;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=3.074;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=0.734;QD=8.51;ReadPosRankSum=0.841;SOR=0.333;set=HC	GT:AD:AF:DP	0/1:13,41:0.76:54
chr17	38153473	rs12453334	C	T	5128.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr17	38153554	rs2241244	G	C	16297.77	.	AC=2;AF=1.00;AN=2;DB;DP=611;set=Intersection	GT:AD:AF:DP	1/1:0,602:1.00:602
chr17	38153714	rs10671123	T	TGA	27093.73	.	AC=2;AF=1.00;AN=2;DB;DP=672;set=Intersection	GT:AD:AF:DP	1/1:0,632:1.00:632
chr17	38172192	rs2227324	G	A	2492.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr17	38172305	rs2071369	T	C	1675.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr17	38172452	rs2071370	T	C	2444.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr17	38172942	rs2227338	A	G	4800.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr17	38173143	rs25645	G	A	4652.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:1,174:0.99:175
chr17	38176256	rs2270401	A	T	3644.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr17	38176476	rs9899955	A	G	3223.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr17	38178149	rs2302776	A	G	1836.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr17	38179492	rs2302777	A	G	12877.77	.	AC=2;AF=1.00;AN=2;DB;DP=468;set=Intersection	GT:AD:AF:DP	1/1:0,464:1.00:464
chr17	38179667	rs2302778	A	G	5532.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr17	38183090	rs2302774	G	T	11645.77	.	AC=2;AF=1.00;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	1/1:2,425:1.00:427
chr17	38188419	rs3935281	C	T	3164.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:1,111:0.99:112
chr17	38188844	rs7502514	A	G	1848.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr17	38189049	rs4072639	G	A	16610.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.94;SOR=0.852;set=HC	GT:AD:AF:DP	1/1:0,378:1.00:378
chr17	38189055	rs3935280	A	G	16397.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.05;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,364:1.00:364
chr17	38189793	rs11078934	T	C	6706.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr17	38192137	rs11078935	T	G	3772.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr17	38251385	rs141144358	A	AT	3879.73	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr17	38252582	.	G	GT	1777.73	.	AC=2;AF=1.00;AN=2;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr17	38252667	rs939346	G	A	5793.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr17	38296626	.	AACACAC	A,AAC	930.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.426;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;FS=3.802;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.76;MQRankSum=0.000;QD=38.78;ReadPosRankSum=0.292;SOR=0.916;set=HC	GT:AD:AF:DP	1/2:1,10,13:0.42,0.54:24
chr17	38297453	rs147446323	CT	C	11475.73	.	AC=1;AF=0.500;AN=2;DB;DP=895;set=Intersection	GT:AD:AF:DP	0/1:459,399:0.47:858
chr17	38323194	rs377329830	CT	C	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.471;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=4.003;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.69;ReadPosRankSum=1.611;SOR=0.199;set=HC	GT:AD:AF:DP	0/1:46,13:0.22:59
chr17	38324766	rs11327454	AT	A	1315.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr17	38334359	rs66989091	A	AG	3393.73	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr17	38433225	rs78201730	A	G	602.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:31,30:0.49:61
chr17	38451739	.	TA	T	357.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.032;ClippingRankSum=0.000;DP=157;ExcessHet=3.0103;FS=4.912;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.638;QD=3.14;ReadPosRankSum=-2.809;SOR=1.409;set=HC	GT:AD:AF:DP	0/1:71,43:0.38:114
chr17	38512197	rs8069541	T	C	267.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:16,14:0.47:30
chr17	38519291	rs502041	C	G	2869.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr17	38556770	rs471692	T	C	11527.77	.	AC=2;AF=1.00;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	1/1:0,425:1.00:425
chr17	38563710	rs558068	C	G	864.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr17	38566396	rs2715548	G	A	883.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr17	38572366	rs2586112	G	A	1107.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr17	38600092	rs598892	G	A	122.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:29,9:0.24:38
chr17	38609187	rs1009727	G	A	2696.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:130,127:0.49:257
chr17	38609207	rs1009728	T	C	3586.77	.	AC=1;AF=0.500;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	0/1:182,172:0.49:354
chr17	38609431	rs5820347	G	GAC	2955.73	.	AC=2;AF=1.00;AN=2;DB;DP=119;MQ=60.09;set=Intersection	GT:AD:AF:DP	1/1:6,86:0.93:92
chr17	38634367	rs9895505	G	C	100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.089;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.88;ReadPosRankSum=0.508;SOR=1.230;set=HC	GT:AD:AF:DP	0/1:20,6:0.23:26
chr17	38634383	rs8072052	A	T	156.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:27,10:0.27:37
chr17	38634929	rs749906	C	T	5638.77	.	AC=1;AF=0.500;AN=2;DB;DP=577;set=Intersection	GT:AD:AF:DP	0/1:283,274:0.49:557
chr17	38635064	rs749907	C	T	2150.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:82,97:0.54:179
chr17	38635107	rs749908	C	G	1357.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:35,55:0.61:90
chr17	38635897	rs8076413	G	A	1569.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:79,73:0.48:152
chr17	38786451	rs4890092	A	T	2110.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:1,71:0.99:72
chr17	38787270	.	C	CTA	1193.73	.	AC=1;AF=0.500;AN=2;DP=108;set=Intersection	GT:AD:AF:DP	0/1:51,40:0.44:91
chr17	38801695	rs376363717	CT	C	147.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.464;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.23;ReadPosRankSum=-1.296;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:91,29:0.24:120
chr17	38813824	rs8068721	G	A	1135.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:2,40:0.95:42
chr17	38813828	rs11412331	G	GT	865.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:2,39:0.95:41
chr17	38816526	rs917593	A	G	3184.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.04;SOR=1.480;set=HC	GT:AD:AF:DP	1/1:0,106:1.00:106
chr17	38816595	rs2008469	T	C	734.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr17	38857975	rs36205605	GTATATATATATATATATATATATATATATATA	G	152.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.853;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=63.17;MQRankSum=-0.811;QD=5.87;ReadPosRankSum=-1.193;SOR=0.566;set=HC	GT:AD:AF:DP	0/1:15,11:0.42:26
chr17	38857995	.	ATATATATATATATATATATATATATATATATATATATT	A	91.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.336;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;FS=1.960;MLEAC=1;MLEAF=0.500;MQ=63.84;MQRankSum=-0.483;QD=2.87;ReadPosRankSum=2.858;SOR=1.562;set=HC	GT:AD:AF:DP	0/1:26,6:0.19:32
chr17	38905477	rs10491127	T	G	5914.77	.	AC=1;AF=0.500;AN=2;DB;DP=460;set=Intersection	GT:AD:AF:DP	0/1:190,260:0.58:450
chr17	38910970	.	C	CAAA	133.90	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.903;ClippingRankSum=-0.000;DP=26;ExcessHet=3.0103;FS=5.229;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.05;ReadPosRankSum=-0.073;SOR=3.383;set=HC	GT:AD:AF:DP	0/1:12,7:0.37:19
chr17	38925413	rs200744358	TTTTA	T	2124.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.526;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=3.728;MLEAC=1;MLEAF=0.500;MQ=60.47;MQRankSum=1.835;QD=22.37;ReadPosRankSum=-1.039;SOR=0.359;set=HC	GT:AD:AF:DP	0/1:37,58:0.61:95
chr17	38935876	rs17558532	C	T	2700.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:130,131:0.50:261
chr17	38938222	rs72824004	T	C	1055.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:39,47:0.55:86
chr17	38950272	rs2250671	T	C	3931.77	.	AC=1;AF=0.500;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	0/1:205,195:0.49:400
chr17	38953540	rs3813038	A	G	14854.77	.	AC=2;AF=1.00;AN=2;DB;DP=569;set=Intersection	GT:AD:AF:DP	1/1:0,561:1.00:561
chr17	38954687	rs9914044	C	T	3500.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr17	38955173	rs7222207	G	A	3200.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr17	38955274	rs7224150	A	C	2264.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr17	38975328	rs17855579	G	A	4620.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.999;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=3.404;MLEAC=2;MLEAF=1.000;MQ=59.70;MQRankSum=1.477;QD=24.32;ReadPosRankSum=6.143;SOR=0.919;set=HC	GT:AD:AF:DP	1/1:17,173:0.91:190
chr17	38976978	rs6503559	C	A	5363.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr17	38976998	rs1799873	G	A	3856.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr17	38977048	rs1799874	T	C	1590.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr17	38978462	rs77919366	C	T	32951.77	.	AC=2;AF=1.00;AN=2;DB;DP=1206;set=Intersection	GT:AD:AF:DP	1/1:0,1201:1.00:1201
chr17	38978536	rs4261597	A	C	35226.77	.	AC=2;AF=1.00;AN=2;DB;DP=1311;set=Intersection	GT:AD:AF:DP	1/1:1,1302:1.00:1303
chr17	38990834	rs2240078	G	C	7798.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr17	38991032	rs6694	T	A	20434.77	.	AC=2;AF=1.00;AN=2;DB;DP=766;set=Intersection	GT:AD:AF:DP	1/1:2,752:1.00:754
chr17	39038941	rs149855322	T	TTTTA	2708.73	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:61,71:0.54:132
chr17	39081546	rs2269860	A	G	234.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:15,12:0.44:27
chr17	39081713	rs8037	A	G	1486.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:89,75:0.46:164
chr17	39084504	rs9257	T	C	1693.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:86,74:0.46:160
chr17	39240426	rs11658607	G	A	9140.77	.	AC=1;AF=0.500;AN=2;DB;DP=811;set=Intersection	GT:AD:AF:DP	0/1:375,435:0.54:810
chr17	39240504	rs11655310	A	G	10846.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.346;ClippingRankSum=0.000;DB;DP=686;ExcessHet=3.0103;FS=1.107;MLEAC=1;MLEAF=0.500;MQ=56.70;MQRankSum=-14.358;QD=15.86;ReadPosRankSum=0.229;SOR=0.594;set=HC	GT:AD:AF:DP	0/1:379,305:0.45:684
chr17	39240511	rs383835	A	T	5426.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.186;ClippingRankSum=0.000;DB;DP=654;ExcessHet=3.0103;FS=7.178;MLEAC=1;MLEAF=0.500;MQ=57.00;MQRankSum=-9.010;QD=8.34;ReadPosRankSum=3.002;SOR=0.632;set=HC	GT:AD:AF:DP	0/1:390,261:0.40:651
chr17	39240661	rs11650484	C	G	5067.77	.	AC=1;AF=0.500;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	0/1:217,231:0.52:448
chr17	39254335	rs201764113	A	AT	10759.73	.	AC=1;AF=0.500;AN=2;DB;DP=672;set=Intersection	GT:AD:AF:DP	0/1:321,345:0.52:666
chr17	39254444	rs6416913	T	C	2011.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:67,82:0.55:149
chr17	39258027	rs7503699	G	A	1925.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.828;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=1.194;MLEAC=1;MLEAF=0.500;MQ=59.72;MQRankSum=-1.494;QD=11.07;ReadPosRankSum=-2.078;SOR=0.575;set=HC	GT:AD:AF:DP	0/1:81,93:0.53:174
chr17	39258495	rs168397	G	A	904.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:44,41:0.48:85
chr17	39261560	rs349792	T	A	703.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=10.263;ClippingRankSum=0.000;DB;DP=252;ExcessHet=3.0103;FS=68.608;MLEAC=1;MLEAF=0.500;MQ=56.69;MQRankSum=-14.921;QD=2.82;ReadPosRankSum=-1.095;SOR=6.343;set=HC	GT:AD:AF:DP	0/1:206,44:0.18:250
chr17	39261608	rs349791	G	A	3871.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.823;ClippingRankSum=0.000;DB;DP=485;ExcessHet=3.0103;FS=31.233;MLEAC=1;MLEAF=0.500;MQ=56.85;MQRankSum=-16.536;QD=8.05;ReadPosRankSum=-3.699;SOR=2.605;set=HC	GT:AD:AF:DP	0/1:368,113:0.23:481
chr17	39261611	rs11654665	G	A	3892.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.899;ClippingRankSum=0.000;DB;DP=499;ExcessHet=3.0103;FS=29.033;MLEAC=1;MLEAF=0.500;MQ=56.79;MQRankSum=-16.196;QD=7.86;ReadPosRankSum=-4.800;SOR=2.376;set=HC	GT:AD:AF:DP	0/1:369,126:0.25:495
chr17	39261933	rs7207685	C	T	5624.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:165,155:0.48:320
chr17	39261949	rs7212474	T	C	5499.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:174,152:0.47:326
chr17	39274069	rs349771	G	C	2841.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:133,136:0.51:269
chr17	39274518	rs9897031	C	T	7249.77	.	AC=1;AF=0.500;AN=2;DB;DP=671;set=Intersection	GT:AD:AF:DP	0/1:321,341:0.52:662
chr17	39305956	rs1497383	G	A	4853.77	.	AC=1;AF=0.500;AN=2;DB;DP=487;set=Intersection	GT:AD:AF:DP	0/1:248,234:0.49:482
chr17	39324229	.	T	TGCAGCAGGTGGTCAG	2968	.	AC=1;AF=0.500;AN=2;FR=0.5000;HP=2;HapScore=1;MGOF=6;MMLQ=24;MQ=50.08;NF=18;NR=12;PP=2968;QD=20;SC=CAGGTGGTCCTGCAGCAGCTG;SbPval=0.1;Source=Platypus;TC=89;TCF=38;TCR=51;TR=30;WE=39324237;set=Platypus	GT:AD:AF:DP	0/1:59,30:0.34:89
chr17	39333956	rs377518	T	C	2211.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr17	39334133	rs389784	T	C	9518.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:0,336:1.00:336
chr17	39334456	rs493514	G	A	14329.77	.	AC=2;AF=1.00;AN=2;DB;DP=536;set=Intersection	GT:AD:AF:DP	1/1:0,522:1.00:522
chr17	39340597	rs452216	G	A	7544.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr17	39340707	rs398825	C	T	11230.77	.	AC=2;AF=1.00;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	1/1:0,417:1.00:417
chr17	39340795	.	ACGGCAGCAGCTGGACATACCACAGCTGGGGTGGCAGGTGGTCTGACAGCAGAGTGGG	A	8300.73	.	AC=2;AF=1.00;AN=2;DP=232;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.41;QD=43.92;SOR=0.964;set=HC	GT:AD:AF:DP	1/1:0,189:1.00:189
chr17	39340812	.	T	C	2965	.	AC=2;AF=1.00;AN=2;FR=1.0000;HP=2;HapScore=1;MMLQ=27;NF=58;NR=72;PP=2965;QD=20;SC=CAGCTGGACATACCACAGCTG;SbPval=0.51;Source=Platypus;TR=130;WS=39340802;set=Platypus	GT:AD:AF:DP	1/1:4,130:0.97:134
chr17	39340826	.	T	C	2861	.	AC=2;AF=1.00;AN=2;BRF=0.41;FR=1.0000;HP=6;HapScore=1;MGOF=45;MMLQ=24;MQ=55.42;NF=53;NR=74;PP=2861;QD=20;SC=ACAGCTGGGGTGGCAGGTGGT;SbPval=0.51;Source=Platypus;TC=132;TCF=54;TCR=78;TR=127;WE=39340834;WS=39340802;set=Platypus	GT:AD:AF:DP	1/1:5,127:0.96:132
chr17	39340843	.	GCAGAGTGGG	ACAGACTGGG,ACAGAGTGGA	2944	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.43;FR=0.5000,0.5000;HP=1;HapScore=1;MGOF=46;MMLQ=28;MQ=55.49;NF=12,39;NR=22,42;PP=1288,2944;QD=39.4549374959;SC=TGGTCTGACAGCAGAGTGGGC;SbPval=0.73;Source=Platypus;TC=129;TCF=52;TCR=77;TR=34,81;WE=39340860;WS=39340833;set=Platypus	GT:AF:DP	0/1:0.26:129
chr17	39340910	rs2320231	T	C	9087.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr17	39341158	rs452531	G	A	7662.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr17	39341266	rs449817	A	G	1746.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr17	39341294	rs385122	T	A	1145.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr17	39346518	rs238824	T	C	19119.77	.	AC=2;AF=1.00;AN=2;DB;DP=697;set=Intersection	GT:AD:AF:DP	1/1:0,696:1.00:696
chr17	39346595	rs11283848	T	TGCTGTGGGTCCAGCTGCTGCCAGCCTA	20153.73	.	AC=2;AF=1.00;AN=2;DB;DP=549;set=Intersection	GT:AD:AF:DP	1/1:0,387:1.00:387
chr17	39406291	rs199605390	T	C	1751.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.352;ClippingRankSum=0.000;DB;DP=575;ExcessHet=3.0103;FS=14.974;MLEAC=1;MLEAF=0.500;MQ=58.43;MQRankSum=-16.967;QD=3.06;ReadPosRankSum=-5.307;SOR=1.936;set=HC	GT:AD:AF:DP	0/1:497,76:0.13:573
chr17	39406299	.	A	G	2116.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;ClippingRankSum=0.000;DP=605;ExcessHet=3.0103;FS=13.420;MLEAC=1;MLEAF=0.500;MQ=58.40;MQRankSum=-16.452;QD=3.51;ReadPosRankSum=-3.974;SOR=1.788;set=HC	GT:AD:AF:DP	0/1:507,96:0.16:603
chr17	39406343	rs148655704	A	G	3915.77	.	AC=1;AF=0.500;AN=2;DB;DP=734;set=Intersection	GT:AD:AF:DP	0/1:508,224:0.31:732
chr17	39406409	rs2191379	C	A	27833.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.230;ClippingRankSum=0.000;DB;DP=830;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.32;MQRankSum=-0.530;QD=33.66;ReadPosRankSum=1.326;SOR=0.348;set=HC	GT:AD:AF:DP	1/1:2,825:1.00:827
chr17	39406409	.	CCAGCTGCTGTCAGCCTTT	ACAGCTGCTGCCAGCCTTC,ACAGCTGCTGTCAGCCTTT	2962	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.46;FR=0.5000,0.5000;HP=1;HapScore=1;MGOF=32;MMLQ=27;MQ=57.36;NF=80,253;NR=92,304;PP=2934,2962;QD=20;SC=ACCTGTGTGTCCAGCTGCTGT;SbPval=0.51;Source=Platypus;TC=558;TCF=254;TCR=304;TR=172,557;WE=39406435;WS=39406399;set=Platypus	GT:AF:DP	0/1:0.31:558
chr17	39406419	rs151209798	T	C	9521.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.482;ClippingRankSum=0.000;DB;DP=803;ExcessHet=3.0103;FS=1.162;MLEAC=1;MLEAF=0.500;MQ=58.20;MQRankSum=-15.018;QD=11.89;ReadPosRankSum=1.434;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:521,280:0.35:801
chr17	39406427	rs139224734	T	C	9055.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.314;ClippingRankSum=0.000;DB;DP=761;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.34;MQRankSum=-13.613;QD=11.93;ReadPosRankSum=0.856;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:506,253:0.33:759
chr17	39406447	rs3967754	A	G	16412.77	.	AC=1;AF=0.500;AN=2;DB;DP=663;set=Intersection	GT:AD:AF:DP	0/1:202,459:0.69:661
chr17	39406461	rs111927217	C	A	5062.77	.	AC=1;AF=0.500;AN=2;DB;DP=575;set=Intersection	GT:AD:AF:DP	0/1:408,165:0.29:573
chr17	39406474	.	C	A	4406.77	.	AC=1;AF=0.500;AN=2;DP=480;set=Intersection	GT:AD:AF:DP	0/1:348,131:0.27:479
chr17	39406492	rs369118638	T	C	2187.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.294;ClippingRankSum=0.000;DB;DP=339;ExcessHet=3.0103;FS=12.895;MLEAC=1;MLEAF=0.500;MQ=57.52;MQRankSum=-8.439;QD=6.47;ReadPosRankSum=-3.439;SOR=1.467;set=HC	GT:AD:AF:DP	0/1:274,64:0.19:338
chr17	39432562	rs9893993	A	T	3675.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr17	39458765	rs1005197	A	G	12615.77	.	AC=2;AF=1.00;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	1/1:0,448:1.00:448
chr17	39459167	rs1005196	G	A	2309.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr17	39523969	.	T	TA	73.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.047;ClippingRankSum=0.000;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.000;QD=0.45;ReadPosRankSum=-1.446;SOR=0.542;set=HC	GT:AD:AF:DP	0/1:136,29:0.18:165
chr17	39535859	rs2239710	A	G	7363.77	.	AC=1;AF=0.500;AN=2;DB;DP=741;set=Intersection	GT:AD:AF:DP	0/1:388,347:0.47:735
chr17	39551662	rs200127910	C	T	3519.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:173,156:0.47:329
chr17	39577180	rs17737019	G	A	3303.77	.	AC=1;AF=0.500;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	0/1:200,163:0.45:363
chr17	39580559	rs9916475	T	A	10280.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.266;ClippingRankSum=0.000;DB;DP=548;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.86;ReadPosRankSum=1.567;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:277,268:0.49:545
chr17	39580562	rs9916484	T	C	10280.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.333;ClippingRankSum=0.000;DB;DP=541;ExcessHet=3.0103;FS=0.518;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.11;ReadPosRankSum=1.950;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:273,265:0.49:538
chr17	39580660	rs9916724	T	C	3335.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:149,146:0.49:295
chr17	39580739	rs9910204	C	A	1314.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:47,63:0.57:110
chr17	39593620	rs9894044	T	C	1195.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:50,58:0.54:108
chr17	39593768	rs897416	A	G	985.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr17	39593872	rs897415	A	G	514.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr17	39594679	rs7209968	A	G	2734.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:81,102:0.56:183
chr17	39594809	rs2071612	C	T	4721.77	.	AC=1;AF=0.500;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	0/1:250,205:0.45:455
chr17	39594934	rs71155140	AC	A,ACC	22264.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=1237;set=Intersection	GT:AF:DP	1/2:0.55,0.41:1140
chr17	39595116	rs9894668	G	T	13118.77	.	AC=1;AF=0.500;AN=2;DB;DP=1315;set=Intersection	GT:AD:AF:DP	0/1:642,667:0.51:1309
chr17	39595661	rs2071611	T	A	4519.77	.	AC=1;AF=0.500;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	0/1:180,216:0.55:396
chr17	39596393	rs12601328	C	A	6824.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.382;ClippingRankSum=0.000;DB;DP=365;ExcessHet=3.0103;FS=1.719;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.85;ReadPosRankSum=-2.217;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:180,182:0.50:362
chr17	39596402	rs2071610	G	A	6870.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.134;ClippingRankSum=0.000;DB;DP=373;ExcessHet=3.0103;FS=0.377;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.57;ReadPosRankSum=-1.481;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:185,185:0.50:370
chr17	39596538	rs2071609	C	T	5659.77	.	AC=1;AF=0.500;AN=2;DB;DP=518;set=Intersection	GT:AD:AF:DP	0/1:264,249:0.49:513
chr17	39596611	rs1350046	T	C	19443.77	.	AC=2;AF=1.00;AN=2;DB;DP=732;set=Intersection	GT:AD:AF:DP	1/1:2,707:1.00:709
chr17	39616288	rs3840884	TG	T	391.73	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:7,12:0.63:19
chr17	39616430	rs2604953	G	T	5488.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr17	39619093	rs2604954	GT	AC	2679.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;JOINED;set=Intersection	GT:AD:AF:DP	0/1:75,70:0.48:145
chr17	39619115	rs2071563	G	A	2902.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:89,82:0.48:171
chr17	39619219	rs2857257	G	A	4046.77	.	AC=1;AF=0.500;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	0/1:153,193:0.56:346
chr17	39619388	rs4796636	C	A	1046.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:39,43:0.52:82
chr17	39620399	rs12948056	C	T	2659.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:128,127:0.50:255
chr17	39620565	rs72830046	C	T	7346.77	.	AC=1;AF=0.500;AN=2;DB;DP=766;set=Intersection	GT:AD:AF:DP	0/1:395,357:0.47:752
chr17	39622046	rs117928429	G	A	1018.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:58,43:0.43:101
chr17	39622068	rs2071561	G	T	1546.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:77,68:0.47:145
chr17	39623363	rs3744786	T	C	2423.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:129,113:0.47:242
chr17	39623622	rs1807434	A	C	3165.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:120,144:0.55:264
chr17	39623708	rs737487	C	T	984.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:38,40:0.51:78
chr17	39633317	rs2239711	A	G	447.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:33,22:0.40:55
chr17	39633349	rs2071601	G	C	717.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:45,36:0.44:81
chr17	39634625	rs7216017	A	G	1372.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:59,55:0.48:114
chr17	39635340	rs2301352	C	T	774.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:36,34:0.49:70
chr17	39636044	rs2011243	G	A	5507.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr17	39637244	rs743686	A	G	3339.77	.	AC=1;AF=0.500;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	0/1:162,155:0.49:317
chr17	39643646	rs2301354	G	A	1847.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:70,77:0.52:147
chr17	39644057	rs2301353	G	A	2074.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:98,86:0.47:184
chr17	39645088	rs4796716	A	G	1171.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:35,51:0.59:86
chr17	39645572	rs34752082	C	A	1705.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:40,76:0.66:116
chr17	39646021	rs1003842	A	G	4306.77	.	AC=1;AF=0.500;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	0/1:192,200:0.51:392
chr17	39659183	rs4796698	G	A	14719.77	.	AC=2;AF=1.00;AN=2;DB;DP=539;set=Intersection	GT:AD:AF:DP	1/1:0,531:1.00:531
chr17	39659194	rs4796697	T	C	14503.77	.	AC=2;AF=1.00;AN=2;DB;DP=547;set=Intersection	GT:AD:AF:DP	1/1:0,541:1.00:541
chr17	39659529	rs7211835	T	C	8702.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr17	39659913	rs9891361	G	A	6745.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr17	39661689	rs8182306	G	A	26361.77	.	AC=2;AF=1.00;AN=2;DB;DP=973;set=Intersection	GT:AD:AF:DP	1/1:0,959:1.00:959
chr17	39670912	rs897420	G	C	6539.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr17	39671045	rs897421	T	C	8919.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:0,332:1.00:332
chr17	39674641	rs1050784	T	C	12909.77	.	AC=2;AF=1.00;AN=2;DB;DP=454;MQ=59.98;set=Intersection	GT:AD:AF:DP	1/1:0,447:1.00:447
chr17	39680580	rs1869719	A	C	14914.77	.	AC=2;AF=1.00;AN=2;DB;DP=542;set=Intersection	GT:AD:AF:DP	1/1:0,537:1.00:537
chr17	39680796	rs1869720	T	A	12155.77	.	AC=2;AF=1.00;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	1/1:0,443:1.00:443
chr17	39681475	rs4601	A	G	4732.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:1,168:0.99:169
chr17	39684321	rs4602	G	C	4145.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr17	39684410	rs11550883	G	A	3793.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr17	39723451	rs6503636	A	G	4416.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr17	39723990	rs3890472	T	A	13061.77	.	AC=2;AF=1.00;AN=2;DB;DP=491;set=Intersection	GT:AD:AF:DP	1/1:1,478:1.00:479
chr17	39724047	rs1008753	T	C	5580.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:1,183:0.99:184
chr17	39726276	rs3816510	C	A	6501.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr17	39727816	rs8075921	T	G	20506.77	.	AC=2;AF=1.00;AN=2;DB;DP=792;set=Intersection	GT:AD:AF:DP	1/1:0,777:1.00:777
chr17	39728050	rs8070680	G	A	30976.77	.	AC=2;AF=1.00;AN=2;DB;DP=1232;set=Intersection	GT:AD:AF:DP	1/1:0,1209:1.00:1209
chr17	39740303	rs200977988	A	ATC	995.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.611;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=1.431;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=0.000;QD=16.60;ReadPosRankSum=0.992;SOR=0.469;set=HC	GT:AD:AF:DP	0/1:8,52:0.87:60
chr17	39742894	rs3826551	G	A	16128.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.884;ClippingRankSum=0.000;DB;DP=373;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.86;MQRankSum=-0.078;QD=43.59;ReadPosRankSum=1.325;SOR=0.599;set=HC	GT:AD:AF:DP	1/1:1,369:1.00:370
chr17	39742898	rs11551758	GC	AT	16029.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.384;ClippingRankSum=0.000;DB;DP=354;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=59.86;MQRankSum=-0.080;QD=45.41;ReadPosRankSum=1.571;SOR=0.621;set=HC	GT:AD:AF:DP	1/1:1,352:1.00:353
chr17	39766504	rs7406899	A	G	4326.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr17	39767744	rs4796681	A	G	5849.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr17	39767836	rs2100509	G	A	1689.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr17	39871700	rs7220169	G	A	2088.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:130,104:0.44:234
chr17	39874075	rs7213435	C	A	1834.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:85,85:0.50:170
chr17	39874137	rs7212417	G	A	2984.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:148,142:0.49:290
chr17	39874267	rs7218465	T	A	1634.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:71,75:0.51:146
chr17	39874283	rs11079007	T	A	1394.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:57,58:0.50:115
chr17	39881289	rs8075017	G	C	18383.77	.	AC=1;AF=0.500;AN=2;DB;DP=1765;set=Intersection	GT:AD:AF:DP	0/1:877,875:0.50:1752
chr17	39881483	rs41314646	C	T	2216.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.954;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.11;ReadPosRankSum=1.781;SOR=0.800;set=HC	GT:AD:AF:DP	0/1:55,61:0.53:116
chr17	39881487	rs11869104	T	C	2166.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.082;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.88;ReadPosRankSum=1.290;SOR=0.827;set=HC	GT:AD:AF:DP	0/1:51,58:0.53:109
chr17	39883559	rs33914436	G	A	3720.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:112,171:0.60:283
chr17	39883595	rs7216154	T	C	2451.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:86,115:0.57:201
chr17	39883672	rs11867808	G	A	818.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:48,39:0.45:87
chr17	39883972	rs4796600	C	T	4705.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr17	39884065	rs35612698	C	A	8267.77	.	AC=1;AF=0.500;AN=2;DB;DP=787;set=Intersection	GT:AD:AF:DP	0/1:390,393:0.50:783
chr17	39884091	rs4796601	G	C	27080.77	.	AC=2;AF=1.00;AN=2;DB;DP=1018;set=Intersection	GT:AD:AF:DP	1/1:0,1014:1.00:1014
chr17	39884246	rs4796602	G	A	9223.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr17	39884419	rs4796692	C	T	15047.77	.	AC=2;AF=1.00;AN=2;DB;DP=562;set=Intersection	GT:AD:AF:DP	1/1:0,554:1.00:554
chr17	39884583	rs4796693	G	A	9483.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	1/1:0,352:1.00:352
chr17	39884684	rs4796694	C	T	1475.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr17	39888455	rs3895103	G	C	15513.77	.	AC=2;AF=1.00;AN=2;DB;DP=578;set=Intersection	GT:AD:AF:DP	1/1:0,573:1.00:573
chr17	39890715	rs4796603	A	T	8543.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr17	39890876	rs4796604	T	C	1803.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:92,83:0.47:175
chr17	39912145	rs1126821	T	A	4772.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr17	39912259	rs141010071	A	AC	1067.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr17	39912581	rs9890858	A	G	1151.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr17	39913645	rs7216034	T	C	11032.77	.	AC=2;AF=1.00;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	1/1:0,414:1.00:414
chr17	39913771	rs143043662	C	T	4852.77	.	AC=1;AF=0.500;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	0/1:209,223:0.52:432
chr17	39914070	rs8067890	G	T	2697.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr17	39923614	rs12942034	A	G	3555.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr17	39925925	rs7405731	A	G	2767.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:82,121:0.60:203
chr17	39928180	rs77327994	G	A	2182.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:77,99:0.56:176
chr17	39959189	rs1065029	C	G	7476.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr17	39959511	rs3809877	C	T	9055.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr17	39966137	rs200609165	G	A	1397.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:86,68:0.44:154
chr17	39969549	rs72835680	C	T	2552.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:162,129:0.44:291
chr17	39977862	rs8072866	C	T	1802.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr17	39983644	rs9896766	A	C	1858.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr17	39983808	rs1046404	G	C	10713.77	.	AC=2;AF=1.00;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	1/1:0,400:1.00:400
chr17	39983820	rs1046403	G	A	11497.77	.	AC=2;AF=1.00;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	1/1:0,433:1.00:433
chr17	39983849	rs1128966	G	C	11262.77	.	AC=2;AF=1.00;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	1/1:0,408:1.00:408
chr17	39987130	rs4796712	T	C	19551.77	.	AC=2;AF=1.00;AN=2;DB;DP=764;set=Intersection	GT:AD:AF:DP	1/1:0,748:1.00:748
chr17	39988601	rs7208062	C	T	3009.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr17	39991790	rs1319763	C	T	4925.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr17	39991867	rs3039772	A	ATATC	10359.73	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr17	39991988	rs1865841	G	A	5644.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr17	39998141	rs1529933	C	T	11670.77	.	AC=2;AF=1.00;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	1/1:2,428:1.00:430
chr17	40003421	rs4796721	C	T	1801.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr17	40010979	rs3744782	G	A	21091.77	.	AC=2;AF=1.00;AN=2;DB;DP=802;set=Intersection	GT:AD:AF:DP	1/1:0,791:1.00:791
chr17	40024023	rs7217218	A	T	2750.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr17	40024867	rs200513285	AAG	A	114.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.220;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=1.549;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.09;ReadPosRankSum=-0.027;SOR=1.042;set=HC	GT:AD:AF:DP	0/1:36,19:0.35:55
chr17	40024868	rs57604811	AG	A	107.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.986;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=7.944;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.07;ReadPosRankSum=0.246;SOR=2.925;set=HC	GT:AD:AF:DP	0/1:35,17:0.33:52
chr17	40024869	rs12946315	G	A	143.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.926;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=11.909;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.76;ReadPosRankSum=0.676;SOR=0.048;set=HC	GT:AD:AF:DP	0/1:36,16:0.31:52
chr17	40024895	rs8079008	A	G	4864.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr17	40025264	rs9912300	G	T	17717.77	.	AC=2;AF=1.00;AN=2;DB;DP=668;set=Intersection	GT:AD:AF:DP	1/1:0,658:1.00:658
chr17	40025285	rs9914829	A	G	20973.77	.	AC=2;AF=1.00;AN=2;DB;DP=782;set=Intersection	GT:AD:AF:DP	1/1:0,772:1.00:772
chr17	40025453	rs3744779	T	C	5042.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr17	40025670	rs3744780	G	A	1432.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr17	40027869	rs1808787	A	T	2538.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr17	40028450	rs8071627	A	T	12638.77	.	AC=2;AF=1.00;AN=2;DB;DP=480;set=Intersection	GT:AD:AF:DP	1/1:0,464:1.00:464
chr17	40028541	rs8071753	A	G	3692.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr17	40028568	rs8071234	C	G	2333.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr17	40048613	rs8065502	A	G	7301.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr17	40049171	rs4796735	G	A	1906.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr17	40049473	rs4796736	A	G	2835.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr17	40053021	rs11652326	T	C	2616.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr17	40058204	rs3816121	C	A	6472.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.76;SOR=2.140;set=HC	GT:AD:AF:DP	1/1:0,155:1.00:155
chr17	40058212	rs3816122	G	A	5931.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.94;SOR=2.488;set=HC	GT:AD:AF:DP	1/1:0,132:1.00:132
chr17	40068613	rs2304499	G	A	2385.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr17	40104384	.	CAAA	C	47.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.036;ClippingRankSum=-0.000;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.97;ReadPosRankSum=1.645;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:5,3:0.38:8
chr17	40105401	rs77012779	T	TATG	11524.73	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr17	40118807	rs4432296	C	T	588.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr17	40123829	rs12602950	G	A	6089.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr17	40125864	rs2070106	G	A	2901.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:180,140:0.44:320
chr17	40146970	rs6503679	G	A	10538.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	1/1:0,358:1.00:358
chr17	40152431	rs374909941	CT	C	1498.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr17	40169519	rs4796758	G	T	5429.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr17	40173851	rs9894001	A	C	9988.77	.	AC=2;AF=1.00;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	1/1:0,365:1.00:365
chr17	40174305	rs35557548	T	C	1173.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:63,56:0.47:119
chr17	40186128	rs4277396	C	A	1765.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr17	40215180	rs4796765	A	G	3595.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr17	40261284	rs1557744	G	A	1295.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:67,61:0.48:128
chr17	40267914	rs144923852	C	T	1427.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:70,64:0.48:134
chr17	40318705	.	C	CT	747.73	.	AC=1;AF=0.500;AN=2;DP=50;set=Intersection	GT:AD:AF:DP	0/1:22,25:0.53:47
chr17	40359505	rs377476267	GCACA	G,GCA	3059.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.552;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=25.93;ReadPosRankSum=0.907;SOR=0.755;set=HC	GT:AD:AF:DP	1/2:6,37,75:0.31,0.64:118
chr17	40368183	.	CT	C	65.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.635;ClippingRankSum=0.000;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.97;ReadPosRankSum=-0.840;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:53,15:0.22:68
chr17	40447558	rs2293158	T	C	2472.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:125,115:0.48:240
chr17	40452675	rs2293157	C	A	1156.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:71,56:0.44:127
chr17	40459562	rs2272087	A	G	4475.77	.	AC=1;AF=0.500;AN=2;DB;DP=509;set=Intersection	GT:AD:AF:DP	0/1:282,217:0.43:499
chr17	40459737	rs1135669	C	T	4784.77	.	AC=1;AF=0.500;AN=2;DB;DP=524;set=Intersection	GT:AD:AF:DP	0/1:273,241:0.47:514
chr17	40460989	rs2293155	A	G	4537.77	.	AC=1;AF=0.500;AN=2;DB;DP=492;set=Intersection	GT:AD:AF:DP	0/1:264,221:0.46:485
chr17	40461003	rs2293154	C	T	4213.77	.	AC=1;AF=0.500;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	0/1:236,207:0.47:443
chr17	40461674	rs12601982	A	G	318.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:14,13:0.48:27
chr17	40462531	rs2067694	C	T	2156.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:115,106:0.48:221
chr17	40462796	rs143605021	TTGTG	T	781.73	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:46,27:0.37:73
chr17	40468489	rs9891867	G	A	629.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:32,29:0.48:61
chr17	40475650	rs3830585	G	GA	7735.73	.	AC=1;AF=0.500;AN=2;DB;DP=654;set=Intersection	GT:AD:AF:DP	0/1:303,329:0.52:632
chr17	40481529	rs2293152	G	C	9140.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	1/1:0,333:1.00:333
chr17	40485857	.	G	C	4035.77	.	AC=1;AF=0.500;AN=2;DP=387;set=Intersection	GT:AD:AF:DP	0/1:193,187:0.49:380
chr17	40490539	.	T	G	398	.	AC=1;AF=0.500;AN=2;BRF=0.4;FR=0.5000;HP=1;HapScore=2;MGOF=18;MMLQ=28;MQ=54.03;NF=20;NR=3;PP=398;QD=18.816139676;SC=GAATACTCCTTGACCTGAGGG;SbPval=0.56;Source=Platypus;TC=55;TCF=48;TCR=7;TR=23;WE=40490547;WS=40490532;set=Platypus	GT:AD:AF:DP	1/0:32,23:0.42:55
chr17	40490559	.	G	T	603	.	AC=1;AF=0.500;AN=2;BRF=0.41;FR=0.5000;HP=1;HapScore=2;MGOF=14;MMLQ=28;MQ=56.29;NF=28;NR=7;PP=603;QD=18.2220346442;SC=GAATACTCCTGGACCTGAGGG;SbPval=0.44;Source=Platypus;TC=73;TCF=60;TCR=13;TR=35;WE=40490567;WS=40490549;set=Platypus	GT:AD:AF:DP	0/1:38,35:0.48:73
chr17	40491273	rs61308380	C	CA	75.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.700;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.80;ReadPosRankSum=-1.581;SOR=0.792;set=HC	GT:AD:AF:DP	0/1:75,20:0.21:95
chr17	40497828	rs12601611	C	T	83.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.239;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=6.929;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.44;ReadPosRankSum=-1.139;SOR=0.048;set=HC	GT:AD:AF:DP	0/1:9,4:0.31:13
chr17	40500265	rs2306581	C	A	663.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:21,28:0.57:49
chr17	40574557	.	C	T	570.77	.	AC=1;AF=0.500;AN=2;DP=80;set=Intersection	GT:AD:AF:DP	0/1:52,27:0.34:79
chr17	40619937	rs4796668	A	G	1162.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr17	40639422	rs8069972	G	A	441.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:23,21:0.48:44
chr17	40642452	rs9899168	T	C	10721.77	.	AC=2;AF=1.00;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	1/1:0,377:1.00:377
chr17	40646251	.	C	CA	132.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.779;ClippingRankSum=0.000;DP=56;ExcessHet=3.0103;FS=7.837;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.55;ReadPosRankSum=-1.417;SOR=2.584;set=HC	GT:AD:AF:DP	0/1:37,15:0.29:52
chr17	40653356	rs72352728	CTTTTG	C	2659.73	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:67,69:0.51:136
chr17	40689455	rs659497	T	C	9243.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:0,348:1.00:348
chr17	40689613	rs2071046	G	C	1121.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:46,49:0.52:95
chr17	40696233	rs86312	C	G	10228.77	.	AC=2;AF=1.00;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	1/1:0,389:1.00:389
chr17	40699291	rs607740	G	A	7421.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr17	40699332	rs607795	T	C	6558.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr17	40699475	rs67843205	G	GC	2707.73	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr17	40700448	rs2854973	C	G	10916.77	.	AC=2;AF=1.00;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	1/1:1,376:1.00:377
chr17	40705100	rs597255	C	T	3882.77	.	AC=1;AF=0.500;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	0/1:164,171:0.51:335
chr17	40706906	rs605059	G	A	3297.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:127,141:0.53:268
chr17	40714804	rs615942	C	A	6213.77	.	AC=1;AF=0.500;AN=2;DB;DP=561;set=Intersection	GT:AD:AF:DP	0/1:268,286:0.52:554
chr17	40716235	rs668799	C	T	4625.77	.	AC=1;AF=0.500;AN=2;DB;DP=467;set=Intersection	GT:AD:AF:DP	0/1:222,229:0.51:451
chr17	40716520	rs598126	A	G	6289.77	.	AC=1;AF=0.500;AN=2;DB;DP=604;set=Intersection	GT:AD:AF:DP	0/1:295,304:0.51:599
chr17	40717297	.	C	T	3870.77	.	AC=1;AF=0.500;AN=2;DP=411;set=Intersection	GT:AD:AF:DP	0/1:213,188:0.47:401
chr17	40720605	rs646174	G	A	2462.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:146,113:0.44:259
chr17	40720632	rs646123	G	A	1761.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:109,82:0.43:191
chr17	40721042	rs650558	C	T	815.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:43,35:0.45:78
chr17	40721360	rs632758	C	A	5674.77	.	AC=1;AF=0.500;AN=2;DB;DP=528;set=Intersection	GT:AD:AF:DP	0/1:259,260:0.50:519
chr17	40722029	rs665268	A	G	1536.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:117,82:0.41:199
chr17	40722162	rs1474040	G	A	3025.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:131,142:0.52:273
chr17	40723391	rs2010750	C	T	846.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:41,39:0.49:80
chr17	40725656	rs2292752	G	C	2588.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:110,117:0.52:227
chr17	40735469	rs1517002	T	G	2342.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:145,113:0.44:258
chr17	40735641	rs10454087	C	T	1845.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:76,88:0.54:164
chr17	40737043	rs9889580	G	C	1351.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.847;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=12.480;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.08;ReadPosRankSum=-2.253;SOR=0.199;set=HC	GT:AD:AF:DP	0/1:62,60:0.49:122
chr17	40737117	rs4792992	G	A	3945.77	.	AC=1;AF=0.500;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	0/1:249,193:0.44:442
chr17	40744320	rs4793253	A	G	999.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:28,42:0.60:70
chr17	40766546	rs1045710	C	G	3608.77	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:200,140:0.41:340
chr17	40811781	rs2292750	C	T	11157.77	.	AC=1;AF=0.500;AN=2;DB;DP=1060;set=Intersection	GT:AD:AF:DP	0/1:529,517:0.49:1046
chr17	40811919	rs525911	A	G	5183.77	.	AC=1;AF=0.500;AN=2;DB;DP=594;set=Intersection	GT:AD:AF:DP	0/1:333,249:0.43:582
chr17	40812797	rs3835175	C	CT	2376.73	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:95,80:0.46:175
chr17	40817448	rs3817331	G	A	964.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:37,41:0.53:78
chr17	40817990	rs7225374	G	A	6881.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr17	40818451	rs1554227	G	A	10221.77	.	AC=1;AF=0.500;AN=2;DB;DP=977;set=Intersection	GT:AD:AF:DP	0/1:484,481:0.50:965
chr17	40818584	rs2292749	C	T	10535.77	.	AC=1;AF=0.500;AN=2;DB;DP=1273;set=Intersection	GT:AD:AF:DP	0/1:735,524:0.42:1259
chr17	40818699	rs1046097	A	G	6442.77	.	AC=1;AF=0.500;AN=2;DB;DP=737;set=Intersection	GT:AD:AF:DP	0/1:412,318:0.44:730
chr17	40822308	rs8071056	C	A	913.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:1,35:0.97:36
chr17	40826525	rs35595844	AAGG	A	1968.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr17	40835819	rs36108420	A	AT	5876.73	.	AC=1;AF=0.500;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	0/1:198,174:0.47:372
chr17	40835922	rs2271029	A	C	5010.77	.	AC=1;AF=0.500;AN=2;DB;DP=520;MQ=60.04;set=Intersection	GT:AD:AF:DP	0/1:270,243:0.47:513
chr17	40836975	rs9889373	A	G	2609.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:132,128:0.49:260
chr17	40841397	rs2271028	C	T	1466.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:44,58:0.57:102
chr17	40842084	rs3760386	G	A	2565.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:138,125:0.48:263
chr17	40849842	rs1553468	A	G	5161.77	.	AC=1;AF=0.500;AN=2;DB;DP=503;set=Intersection	GT:AD:AF:DP	0/1:253,238:0.48:491
chr17	40854534	rs3841620	G	GT	2716.73	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:87,89:0.51:176
chr17	40856573	.	G	GA	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.930;ClippingRankSum=0.000;DP=110;ExcessHet=3.0103;FS=0.985;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=3.660;QD=0.39;ReadPosRankSum=1.273;SOR=0.552;set=HC	GT:AD:AF:DP	0/1:89,18:0.17:107
chr17	40874643	rs11298431	CA	C,CAA	636.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.043;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=6.85;ReadPosRankSum=-0.081;SOR=0.668;set=HC	GT:AD:AF:DP	1/2:13,53,27:0.57,0.29:93
chr17	40880759	.	C	CA	150.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.783;ClippingRankSum=0.000;DP=140;ExcessHet=3.0103;FS=0.871;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=2.871;QD=1.30;ReadPosRankSum=-0.351;SOR=0.580;set=HC	GT:AD:AF:DP	0/1:89,27:0.23:116
chr17	40881033	.	C	CA	148.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.447;ClippingRankSum=0.000;DP=101;ExcessHet=3.0103;FS=3.266;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.88;ReadPosRankSum=0.930;SOR=0.292;set=HC	GT:AD:AF:DP	0/1:59,20:0.25:79
chr17	40905931	.	CTT	C	195.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.856;ClippingRankSum=0.000;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.16;ReadPosRankSum=-0.864;SOR=0.389;set=HC	GT:AD:AF:DP	0/1:32,15:0.32:47
chr17	40912760	rs1078523	A	G	1812.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:53,75:0.59:128
chr17	40913366	rs9892728	C	T	287.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.602;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.59;ReadPosRankSum=-1.456;SOR=0.483;set=HC	GT:AD:AF:DP	0/1:15,15:0.50:30
chr17	40940579	rs61755606	G	A	820.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:42,36:0.46:78
chr17	40986454	.	GGA	G	427.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.637;ClippingRankSum=0.000;DP=127;ExcessHet=3.0103;FS=2.088;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.32;ReadPosRankSum=0.895;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:71,28:0.28:99
chr17	41004637	rs33986943	G	A	2726.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:145,123:0.46:268
chr17	41006760	rs34908272	G	A	2351.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:86,109:0.56:195
chr17	41046440	rs324079	T	G	2868.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr17	41059718	rs161627	A	G	897.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:50,43:0.46:93
chr17	41061489	rs161622	T	C	915.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:32,42:0.57:74
chr17	41063466	rs2229611	T	C	3774.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:123,137:0.53:260
chr17	41103938	rs534720	T	C	10917.77	.	AC=2;AF=1.00;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	1/1:0,408:1.00:408
chr17	41113131	rs35166621	CA	C	2978.73	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr17	41113543	rs2670865	C	G	452.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr17	41116234	rs690941	G	A	18921.77	.	AC=2;AF=1.00;AN=2;DB;DP=692;MQ=60.03;set=Intersection	GT:AD:AF:DP	1/1:1,686:1.00:687
chr17	41116291	rs11278824	CAGCCCT	C	14675.73	.	AC=2;AF=1.00;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	1/1:0,330:1.00:330
chr17	41116565	rs690971	G	T	7616.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr17	41116723	rs690979	G	A	1302.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr17	41121209	rs200141347	GGC	G	191.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.712;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=16.292;MLEAC=1;MLEAF=0.500;MQ=61.27;MQRankSum=-1.047;QD=2.56;ReadPosRankSum=2.900;SOR=1.463;set=HC	GT:AD:AF:DP	0/1:59,16:0.21:75
chr17	41121210	rs113173233	GC	G	1047.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.031;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=12.412;MLEAC=1;MLEAF=0.500;MQ=61.31;MQRankSum=0.867;QD=14.35;ReadPosRankSum=-2.807;SOR=1.286;set=HC	GT:AD:AF:DP	0/1:19,54:0.74:73
chr17	41121217	rs7217553	G	A	3419.73	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.40;QD=45.00;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr17	41121263	rs4793187	G	A	1112.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr17	41122443	rs2670866	T	C	4246.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr17	41132578	rs692074	T	C	912.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr17	41133071	rs1708875	T	C	6921.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:1,260:1.00:261
chr17	41133242	rs550285	G	A	6353.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr17	41150949	rs2271539	G	A	5972.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:1,228:1.00:229
chr17	41150983	rs691954	T	C	4090.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr17	41154817	rs11871636	A	C	3483.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr17	41164126	rs692651	A	C	1240.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr17	41165493	rs588703	A	G	11068.77	.	AC=2;AF=1.00;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	1/1:0,407:1.00:407
chr17	41165734	rs443759	C	T	5280.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr17	41165878	rs13229	C	T	3233.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr17	41167957	rs455055	C	A	5386.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:2,201:0.99:203
chr17	41170898	rs429464	T	C	4560.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr17	41170943	rs55845054	GTAA	G	2675.73	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr17	41246481	rs1799950	T	C	7419.77	.	AC=1;AF=0.500;AN=2;DB;DP=705;set=Intersection	GT:AD:AF:DP	0/1:328,360:0.52:688
chr17	41251931	rs799923	G	A	4159.77	.	AC=1;AF=0.500;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	0/1:183,202:0.52:385
chr17	41262604	.	C	CA	85.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.316;ClippingRankSum=0.000;DP=80;ExcessHet=3.0103;FS=2.602;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.19;ReadPosRankSum=-1.715;SOR=1.185;set=HC	GT:AD:AF:DP	0/1:55,17:0.24:72
chr17	41327684	rs10684756	C	CTG	14777.73	.	AC=2;AF=1.00;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	1/1:0,333:1.00:333
chr17	41332804	rs9904555	T	C	1483.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr17	41361881	rs11322550	AT	A	444.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.811;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=0.777;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.32;ReadPosRankSum=-0.868;SOR=0.817;set=HC	GT:AD:AF:DP	0/1:79,55:0.41:134
chr17	41465867	rs12600401	A	G	3650.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.525;ClippingRankSum=0.000;DB;DP=383;ExcessHet=3.0103;FS=0.373;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=0.000;QD=9.68;ReadPosRankSum=0.353;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:201,176:0.47:377
chr17	41465968	rs377041387	T	C	15605.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=23.880;ClippingRankSum=0.000;DB;DP=802;ExcessHet=3.0103;FS=29.503;MLEAC=1;MLEAF=0.500;MQ=59.48;MQRankSum=-7.733;QD=19.56;ReadPosRankSum=-13.110;SOR=2.153;set=HC	GT:AD:AF:DP	0/1:414,384:0.48:798
chr17	41465970	rs371420425	A	G	14964.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=19.552;ClippingRankSum=0.000;DB;DP=791;ExcessHet=3.0103;FS=31.663;MLEAC=1;MLEAF=0.500;MQ=59.48;MQRankSum=-7.749;QD=19.01;ReadPosRankSum=-11.721;SOR=2.114;set=HC	GT:AD:AF:DP	0/1:413,374:0.48:787
chr17	41465973	.	A	C	14475.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=11.497;ClippingRankSum=0.000;DP=758;ExcessHet=3.0103;FS=27.041;MLEAC=1;MLEAF=0.500;MQ=59.45;MQRankSum=-7.705;QD=19.20;ReadPosRankSum=-11.250;SOR=2.046;set=HC	GT:AD:AF:DP	0/1:393,361:0.48:754
chr17	41465975	rs142037739	T	C	14016.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=12.903;ClippingRankSum=0.000;DB;DP=751;ExcessHet=3.0103;FS=22.909;MLEAC=1;MLEAF=0.500;MQ=59.45;MQRankSum=-7.784;QD=18.76;ReadPosRankSum=-10.105;SOR=1.908;set=HC	GT:AD:AF:DP	0/1:393,354:0.47:747
chr17	41465989	rs147059896	A	G	12449.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=11.708;ClippingRankSum=0.000;DB;DP=685;ExcessHet=3.0103;FS=17.214;MLEAC=1;MLEAF=0.500;MQ=59.45;MQRankSum=-7.615;QD=18.28;ReadPosRankSum=-4.885;SOR=1.651;set=HC	GT:AD:AF:DP	0/1:357,324:0.48:681
chr17	41465993	rs145825652	T	C	12583.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=16.821;ClippingRankSum=0.000;DB;DP=675;ExcessHet=3.0103;FS=18.823;MLEAC=1;MLEAF=0.500;MQ=59.45;MQRankSum=-7.579;QD=18.75;ReadPosRankSum=-4.360;SOR=1.701;set=HC	GT:AD:AF:DP	0/1:350,321:0.48:671
chr17	41465994	.	T	C	12584.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.544;ClippingRankSum=0.000;DP=672;ExcessHet=3.0103;FS=18.823;MLEAC=1;MLEAF=0.500;MQ=59.44;MQRankSum=-7.547;QD=18.84;ReadPosRankSum=-4.357;SOR=1.708;set=HC	GT:AD:AF:DP	0/1:347,321:0.48:668
chr17	41466000	.	C	CGAGGGG	12681.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.656;ClippingRankSum=0.000;DP=661;ExcessHet=3.0103;FS=15.601;MLEAC=1;MLEAF=0.500;MQ=59.45;MQRankSum=-7.485;QD=19.30;ReadPosRankSum=-3.547;SOR=1.584;set=HC	GT:AD:AF:DP	0/1:342,315:0.48:657
chr17	41466002	.	C	CGAG	13029.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=7.564;ClippingRankSum=0.000;DP=614;ExcessHet=3.0103;FS=11.019;MLEAC=1;MLEAF=0.500;MQ=59.44;MQRankSum=-7.632;QD=21.40;ReadPosRankSum=-2.464;SOR=1.380;set=HC	GT:AD:AF:DP	0/1:329,280:0.46:609
chr17	41466003	.	T	G	11341.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=15.747;ClippingRankSum=0.000;DP=602;ExcessHet=3.0103;FS=8.321;MLEAC=1;MLEAF=0.500;MQ=59.45;MQRankSum=-7.611;QD=19.00;ReadPosRankSum=-2.179;SOR=1.237;set=HC	GT:AD:AF:DP	0/1:325,272:0.46:597
chr17	41466007	.	C	CG	10702.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.111;ClippingRankSum=0.000;DP=588;ExcessHet=3.0103;FS=6.088;MLEAC=1;MLEAF=0.500;MQ=59.44;MQRankSum=-7.554;QD=18.33;ReadPosRankSum=-2.052;SOR=1.110;set=HC	GT:AD:AF:DP	0/1:319,265:0.45:584
chr17	41466009	.	GC	G	13004.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.366;ClippingRankSum=0.000;DP=570;ExcessHet=3.0103;FS=3.289;MLEAC=1;MLEAF=0.500;MQ=59.42;MQRankSum=-7.586;QD=22.98;ReadPosRankSum=-2.005;SOR=0.944;set=HC	GT:AD:AF:DP	0/1:310,256:0.45:566
chr17	41466019	.	T	G	11818.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.465;ClippingRankSum=0.000;DP=590;ExcessHet=3.0103;FS=8.543;MLEAC=1;MLEAF=0.500;MQ=59.51;MQRankSum=-6.386;QD=20.17;ReadPosRankSum=-4.447;SOR=1.268;set=HC	GT:AD:AF:DP	0/1:286,300:0.51:586
chr17	41466022	rs79526563	G	C	11560.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.260;ClippingRankSum=0.000;DB;DP=572;ExcessHet=3.0103;FS=8.458;MLEAC=1;MLEAF=0.500;MQ=59.49;MQRankSum=-6.321;QD=20.35;ReadPosRankSum=-4.349;SOR=1.230;set=HC	GT:AD:AF:DP	0/1:274,294:0.52:568
chr17	41466035	rs79889672	A	C	6298.77	.	AC=1;AF=0.500;AN=2;DB;DP=529;set=Intersection	GT:AD:AF:DP	0/1:234,292:0.56:526
chr17	41466049	rs62080661	A	G	11288.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.846;ClippingRankSum=0.000;DB;DP=495;ExcessHet=3.0103;FS=4.350;MLEAC=1;MLEAF=0.500;MQ=59.83;MQRankSum=-3.514;QD=22.85;ReadPosRankSum=-1.432;SOR=1.030;set=HC	GT:AD:AF:DP	0/1:204,290:0.59:494
chr17	41466055	rs62080662	G	C	11015.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.022;ClippingRankSum=0.000;DB;DP=474;ExcessHet=3.0103;FS=4.250;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-1.686;QD=23.29;ReadPosRankSum=0.331;SOR=0.995;set=HC	GT:AD:AF:DP	0/1:196,277:0.59:473
chr17	41466073	rs4986155	T	C	5982.77	.	AC=1;AF=0.500;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	0/1:176,247:0.58:423
chr17	41466096	rs62080664	A	G	5938.77	.	AC=1;AF=0.500;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	0/1:123,246:0.67:369
chr17	41466108	rs62080665	G	C	5163.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:104,232:0.69:336
chr17	41466120	rs66825422	GCGGCGCATGGA	G	7042.73	.	AC=1;AF=0.500;AN=2;DB;DP=301;MQ=60.04;set=Intersection	GT:AD:AF:DP	0/1:96,179:0.65:275
chr17	41477710	rs3179287	A	G	193.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:20,11:0.35:31
chr17	41522213	rs7207008	T	A	1767.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:82,87:0.51:169
chr17	41561601	rs140026870	CGGAAGGA	C	19329.73	.	AC=2;AF=1.00;AN=2;DB;DP=618;set=Intersection	GT:AD:AF:DP	1/1:0,442:1.00:442
chr17	41566783	rs141196624	CTCT	C	3135.73	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:96,83:0.46:179
chr17	41566969	rs1807204	T	G	827.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.948;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.83;ReadPosRankSum=-0.948;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:35,35:0.50:70
chr17	41569933	rs11870101	C	T	955.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:46,38:0.45:84
chr17	41570427	rs2279191	T	C	843.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:64,42:0.40:106
chr17	41573730	rs12602059	T	C	2173.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:86,94:0.52:180
chr17	41582284	rs55956367	A	G	504.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:40,26:0.39:66
chr17	41585657	rs2293014	G	A	1069.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:41,48:0.54:89
chr17	41590928	rs9893137	C	T	2901.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:145,136:0.48:281
chr17	41598940	rs2271957	T	C	4723.77	.	AC=1;AF=0.500;AN=2;DB;DP=480;set=Intersection	GT:AD:AF:DP	0/1:241,235:0.49:476
chr17	41599383	rs2271958	G	A	1593.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:82,75:0.48:157
chr17	41603882	rs9915640	T	C	1528.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:63,73:0.54:136
chr17	41610398	rs2242598	C	T	1019.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:33,46:0.58:79
chr17	41613691	rs56357945	G	T	3049.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:127,141:0.53:268
chr17	41622507	rs79868029	A	G	1025.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:24,36:0.60:60
chr17	41622562	.	C	CGTGTGTGT	1354.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.561;ClippingRankSum=0.000;DP=211;ExcessHet=3.0103;FS=4.804;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.54;ReadPosRankSum=0.084;SOR=0.321;set=HC	GT:AD:AF:DP	0/1:85,57:0.40:142
chr17	41622740	rs2271959	G	T	3329.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:160,159:0.50:319
chr17	41846964	rs1230403	T	C	869.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr17	41879074	rs17742683	T	C	3082.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:147,152:0.51:299
chr17	41955158	rs231521	A	G	12114.77	.	AC=2;AF=1.00;AN=2;DB;DP=453;set=Intersection	GT:AD:AF:DP	1/1:0,445:1.00:445
chr17	41959808	rs124721	T	C	39179.77	.	AC=2;AF=1.00;AN=2;DB;DP=1426;set=Intersection	GT:AD:AF:DP	1/1:0,1417:1.00:1417
chr17	41960343	rs124719	T	C	3005.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.64;SOR=1.028;set=HC	GT:AD:AF:DP	1/1:0,122:1.00:122
chr17	41960633	rs412849	CG	GC	16608.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,368:1.00:368
chr17	41961451	rs231518	T	C	7958.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr17	41977719	.	C	T	362.77	.	AC=1;AF=0.500;AN=2;DP=35;set=Intersection	GT:AD:AF:DP	0/1:20,15:0.43:35
chr17	41994794	rs231458	C	T	6143.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:2,234:0.99:236
chr17	42018471	rs231473	T	C	18607.77	.	AC=2;AF=1.00;AN=2;DB;DP=713;set=Intersection	GT:AD:AF:DP	1/1:0,707:1.00:707
chr17	42030531	rs1058046	G	C	2606.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:101,112:0.53:213
chr17	42030743	rs229969	G	C	12787.77	.	AC=2;AF=1.00;AN=2;DB;DP=482;set=Intersection	GT:AD:AF:DP	1/1:0,480:1.00:480
chr17	42031331	rs2070592	C	T	1190.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.762;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=1.633;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.79;ReadPosRankSum=-0.867;SOR=0.942;set=HC	GT:AD:AF:DP	0/1:43,58:0.57:101
chr17	42083840	rs228770	T	C	2861.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr17	42084097	rs228771	C	G	3276.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.54;SOR=1.059;set=HC	GT:AD:AF:DP	1/1:0,119:1.00:119
chr17	42085150	rs228773	T	C	6089.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr17	42085972	rs186636	C	T	3372.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr17	42090587	rs228778	G	C	1704.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr17	42156471	rs376816	A	C	13889.77	.	AC=2;AF=1.00;AN=2;DB;DP=512;set=Intersection	GT:AD:AF:DP	1/1:0,506:1.00:506
chr17	42157739	rs850856	C	T	23897.77	.	AC=2;AF=1.00;AN=2;DB;DP=885;set=Intersection	GT:AD:AF:DP	1/1:0,877:1.00:877
chr17	42158310	rs377963	T	G	2525.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr17	42162694	rs56379369	CT	C	521.80	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.544;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.49;ReadPosRankSum=-2.096;SOR=0.509;set=HC	GT:AD:AF:DP	0/1:11,44:0.80:55
chr17	42164885	rs228757	G	C	21798.77	.	AC=2;AF=1.00;AN=2;DB;DP=810;set=Intersection	GT:AD:AF:DP	1/1:0,805:1.00:805
chr17	42170181	rs67111880	TG	T	497.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.045;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.70;ReadPosRankSum=0.165;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:1,20:0.95:21
chr17	42170289	rs368328	G	A	975.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr17	42171206	rs454192	T	C	12671.77	.	AC=2;AF=1.00;AN=2;DB;DP=489;set=Intersection	GT:AD:AF:DP	1/1:0,481:1.00:481
chr17	42188311	rs228767	C	G	1704.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr17	42248346	rs7218599	A	T	2151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.233;ClippingRankSum=0.000;DB;DP=259;ExcessHet=3.0103;FS=0.457;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.47;ReadPosRankSum=0.826;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:137,117:0.46:254
chr17	42264962	rs4793082	A	G	6370.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr17	42266224	rs8073555	G	C	332.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:17,14:0.45:31
chr17	42266285	.	C	CT	179.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.248;ClippingRankSum=0.000;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.604;QD=1.93;ReadPosRankSum=-1.213;SOR=0.555;set=HC	GT:AD:AF:DP	0/1:69,24:0.26:93
chr17	42268274	rs757430	C	T	1132.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:51,56:0.52:107
chr17	42329004	rs13306780	A	C	3818.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr17	42334652	rs1970774	A	G	2954.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:164,147:0.47:311
chr17	42334950	rs2252501	T	C	13774.77	.	AC=2;AF=1.00;AN=2;DB;DP=504;set=Intersection	GT:AD:AF:DP	1/1:3,487:0.99:490
chr17	42335387	rs5015	G	A	2259.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:130,118:0.48:248
chr17	42335685	rs13306775	G	A	690.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:37,31:0.46:68
chr17	42336783	rs45488001	G	A	3131.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:166,144:0.46:310
chr17	42336981	rs45473992	C	T	4025.77	.	AC=1;AF=0.500;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	0/1:173,178:0.51:351
chr17	42337976	rs2074107	G	A	16477.77	.	AC=2;AF=1.00;AN=2;DB;DP=600;set=Intersection	GT:AD:AF:DP	1/1:0,585:1.00:585
chr17	42338248	rs2854528	A	G	3986.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:142,165:0.54:307
chr17	42339118	rs13306783	G	GC	1659.73	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:50,61:0.55:111
chr17	42392077	rs68030960	T	C	813.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.199;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=1.808;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.46;ReadPosRankSum=0.676;SOR=0.501;set=HC	GT:AD:AF:DP	0/1:46,40:0.47:86
chr17	42392622	rs708386	T	C	4288.77	.	AC=1;AF=0.500;AN=2;DB;DP=514;set=Intersection	GT:AD:AF:DP	0/1:280,230:0.45:510
chr17	42398052	rs2011951	A	G	3233.77	.	AC=1;AF=0.500;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	0/1:188,154:0.45:342
chr17	42398757	rs2011895	C	A	4364.77	.	AC=1;AF=0.500;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	0/1:211,203:0.49:414
chr17	42400816	rs60776742	C	A	615.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:37,42:0.53:79
chr17	42454566	rs376710190	CT	C	284.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.099;ClippingRankSum=0.000;DB;DP=272;ExcessHet=3.0103;FS=5.069;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=0.012;QD=1.56;ReadPosRankSum=-0.154;SOR=1.248;set=HC	GT:AD:AF:DP	0/1:131,52:0.28:183
chr17	42475983	rs936019	G	C	8935.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr17	42483233	rs2045088	T	A	6291.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.00;SOR=1.387;set=HC	GT:AD:AF:DP	1/1:0,233:1.00:233
chr17	42483531	rs1377808	T	A	949.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	42501692	rs1869495	C	A	4963.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr17	42734746	rs35032511	CT	C	393.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.812;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=1.837;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=0.925;QD=9.37;ReadPosRankSum=0.570;SOR=1.244;set=HC	GT:AD:AF:DP	0/1:9,33:0.79:42
chr17	42751607	rs6416902	C	T	1395.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr17	42800414	rs17682536	C	T	900.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:49,39:0.44:88
chr17	42824402	rs4793144	C	A	14025.77	.	AC=2;AF=1.00;AN=2;DB;DP=542;set=Intersection	GT:AD:AF:DP	1/1:1,537:1.00:538
chr17	42824648	rs9893320	T	C	3218.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr17	42824731	rs9912745	G	A	8057.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.51;SOR=1.007;set=HC	GT:AD:AF:DP	1/1:0,304:1.00:304
chr17	42846994	rs8070918	T	C	784.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.07;SOR=1.101;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr17	42847033	rs58726064	C	G	2221.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr17	42850352	rs68017435	T	C	5526.77	.	AC=1;AF=0.500;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	0/1:209,253:0.55:462
chr17	42851634	rs62066014	G	A	881.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr17	42851729	rs35936481	C	T	2555.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr17	42852604	rs1558083	G	T	24803.77	.	AC=2;AF=1.00;AN=2;DB;DP=557;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.18;SOR=0.967;set=HC	GT:AD:AF:DP	1/1:0,549:1.00:549
chr17	42852610	rs1558084	T	C	25257.77	.	AC=2;AF=1.00;AN=2;DB;DP=588;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.55;SOR=0.964;set=HC	GT:AD:AF:DP	1/1:0,580:1.00:580
chr17	42853427	rs4792955	A	G	6523.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.36;SOR=1.558;set=HC	GT:AD:AF:DP	1/1:0,230:1.00:230
chr17	42853694	rs4793151	C	T	12092.77	.	AC=2;AF=1.00;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	1/1:2,448:1.00:450
chr17	42854208	rs1558085	G	A	16701.77	.	AC=2;AF=1.00;AN=2;DB;DP=635;set=Intersection	GT:AD:AF:DP	1/1:0,629:1.00:629
chr17	42854502	rs1558086	G	A	1357.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr17	42854610	rs8075210	T	C	4522.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr17	42855248	rs2070603	T	C	13113.77	.	AC=2;AF=1.00;AN=2;DB;DP=486;set=Intersection	GT:AD:AF:DP	1/1:0,479:1.00:479
chr17	42855472	rs2070604	T	C	13487.77	.	AC=2;AF=1.00;AN=2;DB;DP=519;set=Intersection	GT:AD:AF:DP	1/1:0,509:1.00:509
chr17	42855554	rs2070605	T	C	6592.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr17	42857430	rs35504352	G	A	26241.77	.	AC=2;AF=1.00;AN=2;DB;DP=991;set=Intersection	GT:AD:AF:DP	1/1:2,980:1.00:982
chr17	42857517	rs16970986	C	T	12263.77	.	AC=2;AF=1.00;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	1/1:0,422:1.00:422
chr17	42932474	rs16971033	A	G	5353.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr17	42937963	.	AT	A	101.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.171;ClippingRankSum=0.000;DP=104;ExcessHet=3.0103;FS=4.357;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=2.144;QD=2.03;ReadPosRankSum=-0.289;SOR=2.080;set=HC	GT:AD:AF:DP	0/1:30,20:0.40:50
chr17	42945541	rs72382060	T	TA	50.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.565;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.627;QD=0.69;ReadPosRankSum=0.025;SOR=0.599;set=HC	GT:AD:AF:DP	0/1:57,17:0.23:74
chr17	43101682	.	TGTGTGTGTGTGTGTGTGTGTGTGTGG	T	105.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.114;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=2.580;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.41;ReadPosRankSum=0.513;SOR=0.132;set=HC	GT:AD:AF:DP	0/1:17,7:0.29:24
chr17	43101684	.	TGTGTGTGTGTGTGTGTGTGTGTGG	T	313.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.876;ClippingRankSum=0.000;DP=42;ExcessHet=3.0103;FS=5.849;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.64;ReadPosRankSum=1.423;SOR=2.833;set=HC	GT:AD:AF:DP	0/1:9,14:0.61:23
chr17	43111154	rs10451271	A	G	680.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.751;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.92;ReadPosRankSum=-0.401;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:48,38:0.44:86
chr17	43111162	rs9303432	A	G	3367.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.08;SOR=1.896;set=HC	GT:AD:AF:DP	1/1:0,96:1.00:96
chr17	43131480	rs4793172	A	T	7342.77	.	AC=1;AF=0.500;AN=2;DB;DP=865;set=Intersection	GT:AD:AF:DP	0/1:476,379:0.44:855
chr17	43131618	rs145150422	A	AT	900.73	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:108,60:0.36:168
chr17	43138597	rs62065834	C	T	4172.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.875;ClippingRankSum=0.000;DB;DP=416;ExcessHet=3.0103;FS=0.519;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.20;ReadPosRankSum=1.698;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:211,198:0.48:409
chr17	43158902	rs916661	G	A	1924.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:63,86:0.58:149
chr17	43163756	rs6416904	A	G	1172.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:57,53:0.48:110
chr17	43163851	rs6503422	T	C	4878.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.133;ClippingRankSum=0.000;DB;DP=439;ExcessHet=3.0103;FS=0.523;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.27;ReadPosRankSum=1.272;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:203,230:0.53:433
chr17	43170907	rs2239921	C	T	1706.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:70,72:0.51:142
chr17	43176632	rs877598	A	C	762.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:35,29:0.45:64
chr17	43181287	rs4793167	A	G	9135.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:0,325:1.00:325
chr17	43183028	rs1053733	G	A	1959.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:61,88:0.59:149
chr17	43183108	rs1053739	G	A	559.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:28,22:0.44:50
chr17	43190658	rs2285426	C	T	1434.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:74,69:0.48:143
chr17	43192549	rs35911033	T	TC	12271.73	.	AC=2;AF=1.00;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	1/1:0,326:1.00:326
chr17	43192681	rs713102	C	A	2431.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.121;ClippingRankSum=0.000;DB;DP=400;ExcessHet=3.0103;FS=13.559;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=0.008;QD=6.32;ReadPosRankSum=1.331;SOR=1.544;set=HC	GT:AD:AF:DP	0/1:193,192:0.50:385
chr17	43192821	rs713101	A	G	16440.77	.	AC=2;AF=1.00;AN=2;DB;DP=620;set=Intersection	GT:AD:AF:DP	1/1:2,606:1.00:608
chr17	43196102	.	C	T	699.77	.	AC=1;AF=0.500;AN=2;DP=54;set=Intersection	GT:AD:AF:DP	0/1:25,29:0.54:54
chr17	43197593	rs2129732	G	A	1253.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:60,52:0.46:112
chr17	43198166	rs11382448	A	AG	4354.73	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr17	43213772	rs2306828	A	C	4604.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:150,198:0.57:348
chr17	43214549	.	C	T	4229.77	.	AC=1;AF=0.500;AN=2;DP=381;set=Intersection	GT:AD:AF:DP	0/1:173,196:0.53:369
chr17	43226472	.	C	CTTTT	477.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.007;ClippingRankSum=0.000;DP=83;ExcessHet=3.0103;FS=1.472;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.29;ReadPosRankSum=-1.478;SOR=0.387;set=HC	GT:AD:AF:DP	0/1:63,13:0.17:76
chr17	43226478	rs7216041	C	T	505.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.522;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=10.620;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.50;ReadPosRankSum=-2.257;SOR=0.125;set=HC	GT:AD:AF:DP	0/1:71,21:0.23:92
chr17	43227766	rs78243847	T	TTTGG	2885.73	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr17	43308183	rs58744688	A	C	1361.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:45,49:0.52:94
chr17	43314515	rs35156005	TG	T	1351.73	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:45,56:0.55:101
chr17	43316520	rs1023995	T	C	3833.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr17	43318778	rs7218169	GC	CG	8560.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr17	43319434	rs372669041	TCCG	T	2460.73	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:93,68:0.42:161
chr17	43319458	.	GCCT	G	481	.	AC=1;AF=0.500;AN=2;BRF=0.55;FR=0.5000;HP=4;HapScore=1;MGOF=19;MMLQ=24;MQ=60.01;NF=10;NR=27;PP=481;QD=13.2432432432;SC=CGCCGCCGCCGCCTCCCGGAG;SbPval=0.92;Source=Platypus;TC=106;TCF=42;TCR=64;TR=37;WE=43319468;WS=43319448;set=Platypus	GT:AD:AF:DP	1/0:69,37:0.35:106
chr17	43319770	rs1801353	C	T	4703.77	.	AC=1;AF=0.500;AN=2;DB;DP=495;set=Intersection	GT:AD:AF:DP	0/1:250,234:0.48:484
chr17	43333125	rs11651968	C	T	4105.77	.	AC=1;AF=0.500;AN=2;DB;DP=442;set=Intersection	GT:AD:AF:DP	0/1:234,198:0.46:432
chr17	43333785	rs76453679	AAGAC	A	4198.73	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:135,111:0.45:246
chr17	43334649	rs60163605	C	A	2142.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.355;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=0.634;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.42;ReadPosRankSum=-0.629;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:80,59:0.42:139
chr17	43334653	rs58314091	T	C	2148.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.142;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.04;ReadPosRankSum=-0.369;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:78,56:0.42:134
chr17	43342141	rs1047833	G	C	7932.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr17	43342306	rs2285674	C	A	485.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:16,19:0.54:35
chr17	43344073	rs2074293	G	A	2649.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:136,126:0.48:262
chr17	43351127	rs2072090	G	C	2001.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:96,99:0.51:195
chr17	43352049	rs17685379	C	T	521.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:25,23:0.48:48
chr17	43364293	rs56405343	C	CG	23052.73	.	AC=2;AF=1.00;AN=2;DB;DP=633;set=Intersection	GT:AD:AF:DP	1/1:0,623:1.00:623
chr17	43902915	rs71375321	G	A	7387.77	.	AC=1;AF=0.500;AN=2;DB;DP=762;set=Intersection	GT:AD:AF:DP	0/1:388,360:0.48:748
chr17	43910455	rs17689966	G	A	2717.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:172,145:0.46:317
chr17	43923180	rs242944	G	A	715.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.759;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.863;MLEAC=1;MLEAF=0.500;MQ=47.38;MQRankSum=-5.133;QD=9.18;ReadPosRankSum=1.167;SOR=0.553;set=HC	GT:AD:AF:DP	0/1:43,35:0.45:78
chr17	43923898	rs171443	A	G	2849.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.26;QD=30.00;SOR=1.420;set=HC	GT:AD:AF:DP	1/1:0,95:1.00:95
chr17	43924412	rs242943	T	C	114.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:28,7:0.20:35
chr17	44060841	rs141120474	T	G	1565.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.964;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=1.235;MLEAC=1;MLEAF=0.500;MQ=45.36;MQRankSum=-3.976;QD=9.32;ReadPosRankSum=-1.124;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:98,70:0.42:168
chr17	44067382	rs2258689	T	C	2251.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.138;ClippingRankSum=0.000;DB;DP=217;ExcessHet=3.0103;FS=1.663;MLEAC=1;MLEAF=0.500;MQ=48.38;MQRankSum=-4.442;QD=10.38;ReadPosRankSum=0.296;SOR=0.564;set=HC	GT:AD:AF:DP	0/1:106,111:0.51:217
chr17	44091780	rs66499584	G	A	800.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.019;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=6.573;MLEAC=1;MLEAF=0.500;MQ=46.82;MQRankSum=-1.636;QD=14.83;ReadPosRankSum=0.560;SOR=1.742;set=HC	GT:AD:AF:DP	0/1:21,33:0.61:54
chr17	44109843	rs1078997	A	G	327.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.781;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=2.993;MLEAC=1;MLEAF=0.500;MQ=47.26;MQRankSum=-2.304;QD=14.25;ReadPosRankSum=-0.418;SOR=0.172;set=HC	GT:AD:AF:DP	0/1:9,14:0.61:23
chr17	44363740	.	C	A	301.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.995;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=1.397;MLEAC=1;MLEAF=0.500;MQ=39.62;MQRankSum=-0.958;QD=9.43;ReadPosRankSum=0.133;SOR=1.051;set=HC	GT:AD:AF:DP	0/1:19,13:0.41:32
chr17	44788253	rs78850923	G	A	974.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr17	44833088	rs71138549	AT	A	410.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.826;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=8.556;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.000;QD=3.48;ReadPosRankSum=0.132;SOR=0.156;set=HC	GT:AD:AF:DP	0/1:64,54:0.46:118
chr17	44950122	rs4968281	T	C	1329.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr17	45000529	rs189899	G	C	2924.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:178,145:0.45:323
chr17	45000547	rs183199	G	C	9081.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:0,338:1.00:338
chr17	45008570	rs197922	G	A	1888.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:110,92:0.46:202
chr17	45008742	rs197923	G	C	626.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:30,28:0.48:58
chr17	45012248	rs169126	T	G	1660.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr17	45017859	rs758392	A	G	2569.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:112,118:0.51:230
chr17	45044147	rs11079745	C	A	2194.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:102,99:0.49:201
chr17	45050533	rs11079746	T	C	5997.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr17	45198400	rs938904	G	A	6353.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr17	45214519	rs74348171	A	G	451.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.642;ClippingRankSum=0.000;DB;DP=462;ExcessHet=3.0103;FS=0.905;MLEAC=1;MLEAF=0.500;MQ=58.62;MQRankSum=-18.707;QD=0.99;ReadPosRankSum=-6.344;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:411,45:0.10:456
chr17	45214527	rs62075618	T	C	723.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.830;ClippingRankSum=0.000;DB;DP=459;ExcessHet=3.0103;FS=0.836;MLEAC=1;MLEAF=0.500;MQ=58.42;MQRankSum=-18.991;QD=1.60;ReadPosRankSum=-5.736;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:399,54:0.12:453
chr17	45214604	rs75661039	AT	TC	750.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.017;ClippingRankSum=0.000;DB;DP=247;ExcessHet=3.0103;FS=9.439;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.19;MQRankSum=-14.630;QD=3.09;ReadPosRankSum=-5.326;SOR=0.287;set=HC	GT:AD:AF:DP	0/1:203,40:0.16:243
chr17	45234303	rs200611688	G	C	364.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.714;ClippingRankSum=0.000;DB;DP=266;ExcessHet=3.0103;FS=7.738;MLEAC=1;MLEAF=0.500;MQ=58.53;MQRankSum=-13.093;QD=1.39;ReadPosRankSum=-1.154;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:223,40:0.15:263
chr17	45234406	rs112848754	CA	C	364.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.721;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=6.258;MLEAC=1;MLEAF=0.500;MQ=57.93;MQRankSum=-6.460;QD=4.34;ReadPosRankSum=0.391;SOR=0.423;set=HC	GT:AD:AF:DP	0/1:69,15:0.18:84
chr17	45234417	rs193061947	A	G	378.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.183;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=4.440;MLEAC=1;MLEAF=0.500;MQ=57.97;MQRankSum=-6.489;QD=5.26;ReadPosRankSum=-1.402;SOR=0.255;set=HC	GT:AD:AF:DP	0/1:58,14:0.19:72
chr17	45234420	rs78493795	T	G	426.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.289;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=4.396;MLEAC=1;MLEAF=0.500;MQ=58.10;MQRankSum=-6.798;QD=6.01;ReadPosRankSum=-1.634;SOR=0.267;set=HC	GT:AD:AF:DP	0/1:57,14:0.20:71
chr17	45234760	rs11372544	C	CA	1088.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.526;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=0.791;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.90;ReadPosRankSum=-1.836;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:37,73:0.66:110
chr17	45380002	rs3760372	T	C	2613.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr17	45385012	rs3809863	C	T	7079.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr17	45422628	rs7214410	A	G	1336.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:1,49:0.98:50
chr17	45425115	rs7206971	G	A	1017.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr17	45425144	rs3851808	C	T	1971.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr17	45438886	rs10538163	CAGTG	C	6399.73	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:2,147:0.99:149
chr17	45438952	rs6504872	C	T	1761.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:1,60:0.98:61
chr17	45451894	rs4968318	G	A	2538.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr17	45479446	rs12452315	A	C	2891.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr17	45479706	rs11079774	C	G	1232.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr17	45479733	rs12452796	A	C	833.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr17	45567593	rs142960189	ATC	A	22430.73	.	AC=2;AF=1.00;AN=2;DB;DP=547;set=Intersection	GT:AD:AF:DP	1/1:0,520:1.00:520
chr17	45569815	rs2610367	A	G	10175.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	1/1:0,376:1.00:376
chr17	45623409	.	G	GGT,GGTGT	906.73	.	AC=1,0;AF=0.500,0.00;AN=2;DP=328;set=Intersection	GT:AF:DP	0/1:0.45:125
chr17	45623439	.	T	TGA	1080	.	AC=1;AF=0.500;AN=2;BRF=0.47;FR=0.5000;HP=2;HapScore=3;MGOF=30;MMLQ=28;MQ=59.44;NF=6;NR=93;PP=1080;QD=10.9393939394;SC=TGTGTGTGTGTGAGAGAGAGA;SbPval=0.57;Source=Platypus;TC=128;TCF=8;TCR=120;TR=99;WE=45623450;WS=45623427;set=Platypus	GT:AD:AF:DP	1/0:29,99:0.77:128
chr17	45646981	rs367947091	CT	C	168.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.219;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=1.281;MLEAC=1;MLEAF=0.500;MQ=59.17;MQRankSum=1.275;QD=2.14;ReadPosRankSum=-2.048;SOR=0.910;set=HC	GT:AD:AF:DP	0/1:51,28:0.35:79
chr17	45663680	rs372546318	GTA	G	1308.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.139;ClippingRankSum=0.000;DB;DP=303;ExcessHet=3.0103;FS=1.874;MLEAC=1;MLEAF=0.500;MQ=58.46;MQRankSum=-0.508;QD=4.71;ReadPosRankSum=1.103;SOR=0.875;set=HC	GT:AD:AF:DP	0/1:206,72:0.26:278
chr17	45663912	rs112743441	T	G	1832.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:58,69:0.54:127
chr17	45664573	rs368843753	CT	C	497.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.766;ClippingRankSum=0.000;DB;DP=399;ExcessHet=3.0103;FS=0.488;MLEAC=1;MLEAF=0.500;MQ=57.31;MQRankSum=-8.100;QD=1.30;ReadPosRankSum=-0.909;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:284,98:0.26:382
chr17	45668339	.	T	G	2472	.	AC=1;AF=0.500;AN=2;BRF=0.46;FR=0.5000;HP=6;HapScore=2;MGOF=5;MMLQ=30;MQ=40.65;NF=0;NR=109;PP=2472;QD=22.9979010325;SC=ACTTTGAAAATAAGAGAAAAT;SbPval=1.0;Source=Platypus;TC=245;TCF=13;TCR=232;TR=109;WE=45668347;WS=45668329;set=Platypus	GT:AD:AF:DP	1/0:136,109:0.44:245
chr17	45669359	rs200616431	T	G	2807.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.860;ClippingRankSum=0.000;DB;DP=1412;ExcessHet=3.0103;FS=1.430;MLEAC=1;MLEAF=0.500;MQ=55.96;MQRankSum=-6.129;QD=1.99;ReadPosRankSum=1.502;SOR=0.858;set=HC	GT:AD:AF:DP	0/1:1138,273:0.19:1411
chr17	45669428	rs59875832	T	TAAA	1476.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.916;ClippingRankSum=0.000;DB;DP=582;ExcessHet=3.0103;FS=54.387;MLEAC=1;MLEAF=0.500;MQ=54.69;MQRankSum=-18.124;QD=3.29;ReadPosRankSum=-8.267;SOR=6.066;set=HC	GT:AD:AF:DP	0/1:372,77:0.17:449
chr17	45669444	rs111230318	A	G	153.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.645;ClippingRankSum=0.000;DB;DP=411;ExcessHet=3.0103;FS=42.251;MLEAC=1;MLEAF=0.500;MQ=58.01;MQRankSum=-19.421;QD=0.38;ReadPosRankSum=-8.913;SOR=6.799;set=HC	GT:AD:AF:DP	0/1:366,44:0.11:410
chr17	45677192	.	C	CT	165.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.544;ClippingRankSum=0.000;DP=151;ExcessHet=3.0103;FS=3.401;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.000;QD=1.74;ReadPosRankSum=1.073;SOR=0.227;set=HC	GT:AD:AF:DP	0/1:72,23:0.24:95
chr17	45696920	.	C	CA	88.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.359;ClippingRankSum=0.000;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.29;ReadPosRankSum=0.181;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:18,9:0.33:27
chr17	45742233	rs56226803	T	A	1712.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr17	45754569	rs11301979	AC	A	3232.73	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr17	45755810	rs4239162	G	A	1246.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr17	45759767	rs7223246	C	T	825.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:53,41:0.44:94
chr17	45774072	rs8078309	T	C	17806.77	.	AC=2;AF=1.00;AN=2;DB;DP=690;set=Intersection	GT:AD:AF:DP	1/1:0,682:1.00:682
chr17	45786452	rs4794057	C	T	1329.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr17	45786621	rs80267077	G	A	2290.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:72,109:0.60:181
chr17	45885687	rs9907142	A	G	2482.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr17	45885756	rs9911983	C	T	2888.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:114,124:0.52:238
chr17	45887951	rs2074189	G	T	1481.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:85,71:0.46:156
chr17	45888251	rs2074188	C	G	2243.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:140,108:0.44:248
chr17	45890707	rs2301690	C	T	3738.77	.	AC=1;AF=0.500;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	0/1:205,187:0.48:392
chr17	45890898	rs55928544	A	G	2132.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:97,92:0.49:189
chr17	45892545	rs55998645	T	C	377.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.173;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=5.421;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.00;ReadPosRankSum=-1.155;SOR=0.276;set=HC	GT:AD:AF:DP	0/1:42,21:0.33:63
chr17	45892821	rs17700604	G	A	477.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:45,22:0.33:67
chr17	45893862	rs17773860	G	A	1914.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:87,91:0.51:178
chr17	45894735	rs9914156	A	G	4871.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr17	45896053	rs62076126	G	A	1339.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:60,63:0.51:123
chr17	45896478	rs878171	T	C	6635.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr17	45896637	rs8077844	A	G	242.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:15,10:0.40:25
chr17	45897531	rs1985407	C	A	20645.77	.	AC=2;AF=1.00;AN=2;DB;DP=775;set=Intersection	GT:AD:AF:DP	1/1:0,764:1.00:764
chr17	45904163	rs3809869	A	G	6887.77	.	AC=1;AF=0.500;AN=2;DB;DP=681;set=Intersection	GT:AD:AF:DP	0/1:323,348:0.52:671
chr17	45904420	rs11538868	C	T	4797.77	.	AC=1;AF=0.500;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	0/1:179,219:0.55:398
chr17	45905779	rs17774166	G	A	670.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:14,30:0.68:44
chr17	45905850	rs4793671	C	T	3305.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr17	45912696	rs17701113	C	T	1781.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:113,85:0.43:198
chr17	45913653	rs11654648	C	T	1147.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:61,54:0.47:115
chr17	45915468	rs878295	T	G	2547.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:102,110:0.52:212
chr17	45915788	rs7350974	T	C	13465.77	.	AC=2;AF=1.00;AN=2;DB;DP=492;set=Intersection	GT:AD:AF:DP	1/1:0,490:1.00:490
chr17	45917147	rs1004770	C	G	887.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:21,35:0.62:56
chr17	45992580	rs60876460	C	CA	222.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.429;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=1.579;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.740;QD=1.37;ReadPosRankSum=-0.623;SOR=0.858;set=HC	GT:AD:AF:DP	0/1:128,35:0.21:163
chr17	45994044	rs2228253	C	T	10369.77	.	AC=1;AF=0.500;AN=2;DB;DP=922;set=Intersection	GT:AD:AF:DP	0/1:436,473:0.52:909
chr17	45994094	rs2228251	T	C	8990.77	.	AC=1;AF=0.500;AN=2;DB;DP=808;set=Intersection	GT:AD:AF:DP	0/1:386,422:0.52:808
chr17	45994154	rs2229358	G	A	7909.77	.	AC=1;AF=0.500;AN=2;DB;DP=765;set=Intersection	GT:AD:AF:DP	0/1:381,381:0.50:762
chr17	46002744	rs1130932	G	T	4204.77	.	AC=1;AF=0.500;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	0/1:248,211:0.46:459
chr17	46022065	rs17679445	G	A	1356.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:92,72:0.44:164
chr17	46022889	rs2002136	C	T	2638.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.293;ClippingRankSum=0.000;DB;DP=268;ExcessHet=3.0103;FS=2.028;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.85;ReadPosRankSum=-1.246;SOR=0.822;set=HC	GT:AD:AF:DP	0/1:137,131:0.49:268
chr17	46023694	rs4378657	G	A	2481.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:156,123:0.44:279
chr17	46023954	rs79515268	A	G	3425.77	.	AC=1;AF=0.500;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	0/1:198,175:0.47:373
chr17	46048157	rs2525084	A	G	1256.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.34;SOR=1.255;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	46048165	rs2597168	T	C	1256.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.88;SOR=1.382;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr17	46048168	rs2255697	C	T	1231.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.62;SOR=1.302;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr17	46048592	rs2905846	A	G	8867.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,319:1.00:319
chr17	46048858	rs2525085	C	G	9330.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:0,327:1.00:327
chr17	46048920	rs72823513	A	G	1360.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:88,61:0.41:149
chr17	46051911	rs886444	G	A	1561.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr17	46052793	rs2597172	A	G	3380.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr17	46054264	rs2525087	C	A	3626.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:2,138:0.99:140
chr17	46055106	rs2597173	C	T	6771.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr17	46055347	rs2875746	A	G	3976.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr17	46055435	.	G	GTT	160.92	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.431;ClippingRankSum=-0.000;DP=24;ExcessHet=3.0103;FS=3.522;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=17.88;ReadPosRankSum=1.593;SOR=0.916;set=HC	GT:AD:AF:DP	1/1:1,8:0.89:9
chr17	46103760	rs12051	A	G	3942.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.38;SOR=1.643;set=HC	GT:AD:AF:DP	1/1:0,144:1.00:144
chr17	46106634	rs9898218	G	T	1250.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr17	46109371	rs72823530	G	A	1575.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:53,68:0.56:121
chr17	46109428	rs35091825	T	C	2692.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:153,121:0.44:274
chr17	46110469	rs7209072	A	G	2314.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:90,99:0.52:189
chr17	46114692	rs41280120	C	G	694.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:55,37:0.40:92
chr17	46115072	rs199699704	C	CG	4308.73	.	AC=2;AF=1.00;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.24;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,102:1.00:102
chr17	46115079	.	C	T	662.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.389;ClippingRankSum=0.000;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.98;ReadPosRankSum=-0.294;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:55,40:0.42:95
chr17	46115084	rs201261614	T	TGG	3718.73	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.80;SOR=1.320;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr17	46115122	.	A	AG	1108.73	.	AC=2;AF=1.00;AN=2;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr17	46128359	rs12936731	G	C	954.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:42,41:0.49:83
chr17	46132212	rs373501023	T	TG	1825.73	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr17	46132424	rs72823599	C	G	1122.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:72,54:0.43:126
chr17	46132564	rs143423898	AG	A	1882.73	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:72,77:0.52:149
chr17	46134236	rs60312877	A	ACT	641.73	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:19,20:0.51:39
chr17	46152559	rs2240122	C	A	643.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.199;ClippingRankSum=0.000;DB;DP=290;ExcessHet=3.0103;FS=1.363;MLEAC=1;MLEAF=0.500;MQ=60.46;MQRankSum=0.000;QD=2.53;ReadPosRankSum=-1.085;SOR=0.545;set=HC	GT:AD:AF:DP	0/1:174,80:0.31:254
chr17	46153580	rs11658242	A	G	1602.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:95,79:0.45:174
chr17	46189235	rs140936606	A	AT	65.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.13;ReadPosRankSum=-0.379;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:14,7:0.33:21
chr17	46190106	.	T	TC	405.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.016;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;FS=1.512;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.90;ReadPosRankSum=0.682;SOR=1.157;set=HC	GT:AD:AF:DP	0/1:18,23:0.56:41
chr17	46190819	rs8080662	G	A	2970.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:118,136:0.54:254
chr17	46190910	.	GTT	G	46.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.751;ClippingRankSum=0.000;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.23;ReadPosRankSum=0.479;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:31,7:0.18:38
chr17	46190928	rs12601675	TG	CA	1030.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;JOINED;set=Intersection	GT:AD:AF:DP	0/1:14,27:0.66:41
chr17	46195926	rs8071267	C	T	2042.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.636;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=0.260;QD=20.84;ReadPosRankSum=0.934;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:44,54:0.55:98
chr17	46195933	.	C	A	2106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.843;ClippingRankSum=0.000;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=0.099;QD=18.64;ReadPosRankSum=1.655;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:55,58:0.51:113
chr17	46195939	.	CA	C	258.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.773;ClippingRankSum=0.000;DP=131;ExcessHet=3.0103;FS=1.730;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.009;QD=2.10;ReadPosRankSum=-0.944;SOR=0.942;set=HC	GT:AD:AF:DP	0/1:85,38:0.31:123
chr17	46198876	rs3744346	G	C	474.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:32,25:0.44:57
chr17	46239985	rs208005	A	G	3767.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr17	46248088	rs7225484	T	C	1195.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.691;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=4.159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.07;ReadPosRankSum=-0.545;SOR=1.342;set=HC	GT:AD:AF:DP	0/1:35,50:0.59:85
chr17	46248088	.	T	TC	883	.	AC=1;AF=0.500;AN=2;BRF=0.37;FR=0.5000;HP=13;HapScore=3;MGOF=8;MMLQ=23;MQ=60.0;NF=2;NR=15;PP=883;QD=52.1764705882;SC=TTTTTTTTTTTCGAGATAGAG;SbPval=0.26;Source=Platypus;TC=69;TCF=4;TCR=65;TR=17;WE=46248096;WS=46248064;set=Platypus	GT:AD:AF:DP	1/0:52,17:0.25:69
chr17	46262171	rs2278868	C	T	1500.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:84,75:0.47:159
chr17	46265433	rs2305433	G	C	893.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:41,41:0.50:82
chr17	46607021	rs7226137	T	C	9381.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:0,337:1.00:337
chr17	46620288	rs1042815	G	A	791.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:30,32:0.52:62
chr17	46622335	rs111979968	A	AC	583.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr17	46629593	rs2229304	G	T	5504.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr17	46632725	rs72332254	AGG	A	817.76	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=12.553;MLEAC=2;MLEAF=1.000;MQ=63.11;MQRankSum=0.485;QD=34.07;ReadPosRankSum=2.673;SOR=5.782;set=HC	GT:AD:AF:DP	1/1:3,21:0.88:24
chr17	46632729	.	AGG	A	506.75	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.658;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=63.43;MQRankSum=0.514;QD=26.67;ReadPosRankSum=2.982;SOR=3.611;set=HC	GT:AD:AF:DP	0/1:2,17:0.89:19
chr17	46651061	rs2288277	T	C	2452.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr17	46669430	rs9299	C	T	555.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr17	46670520	rs7406798	T	C	1684.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr17	46673723	rs12949148	TC	GT	32444.77	.	AC=2;AF=1.00;AN=2;DB;DP=1255;JOINED;set=Intersection	GT:AD:AF:DP	1/1:5,1237:1.00:1242
chr17	46675240	rs34438598	G	T	5709.77	.	AC=1;AF=0.500;AN=2;DB;DP=601;set=Intersection	GT:AD:AF:DP	0/1:319,275:0.46:594
chr17	46688256	rs7406910	T	C	21900.77	.	AC=2;AF=1.00;AN=2;DB;DP=822;set=Intersection	GT:AD:AF:DP	1/1:1,809:1.00:810
chr17	46691587	rs112987208	A	AGGCCCCCTGCCC	4017.73	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr17	46702999	rs112409771	C	G	322.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:38,19:0.33:57
chr17	46709835	rs718079	A	G	988.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr17	46799812	rs1054072	A	G	1448.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:32,61:0.66:93
chr17	46840178	rs12936178	T	C	1908.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:81,85:0.51:166
chr17	46847364	rs2032844	C	A	1396.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:100,69:0.41:169
chr17	46847524	rs2032843	T	A	435.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:12,19:0.61:31
chr17	46847575	rs11868085	C	T	135.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:11,7:0.39:18
chr17	46868710	rs3887854	C	T	1337.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:57,62:0.52:119
chr17	46879079	rs12947660	G	T	825.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:20,39:0.66:59
chr17	46881748	rs489005	T	C	11635.77	.	AC=2;AF=1.00;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	1/1:0,444:1.00:444
chr17	46894377	rs3959442	A	C	12078.77	.	AC=1;AF=0.500;AN=2;DB;DP=1203;set=Intersection	GT:AD:AF:DP	0/1:593,597:0.50:1190
chr17	46926772	rs551605	A	G	1280.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr17	46934001	rs72437948	GCATT	G	2197.73	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:63,58:0.48:121
chr17	46934007	rs2546495	A	C	1430.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:90,63:0.41:153
chr17	46939658	rs10278	C	G	5362.77	.	AC=1;AF=0.500;AN=2;DB;DP=641;set=Intersection	GT:AD:AF:DP	0/1:344,271:0.44:615
chr17	46970836	rs684682	A	G	4050.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr17	46972479	rs3080082	ATCTC	A	12666.73	.	AC=1;AF=0.500;AN=2;DB;DP=707;MQ=60.11;set=Intersection	GT:AD:AF:DP	0/1:367,332:0.47:699
chr17	46973139	rs35074390	TG	T	4651.73	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr17	46985756	rs71144541	AG	A	1373.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr17	46988044	rs999475	G	A	436.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:8,18:0.69:26
chr17	46993370	rs4378658	G	A	716.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:28,32:0.53:60
chr17	46993620	.	G	GTTTTTTTT	174.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.574;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;FS=2.336;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.28;ReadPosRankSum=-0.605;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:11,6:0.35:17
chr17	47000110	rs2088139	C	T	792.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:31,38:0.55:69
chr17	47000128	.	G	GA	126.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.846;ClippingRankSum=0.000;DP=83;ExcessHet=3.0103;FS=1.173;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=0.000;QD=1.69;ReadPosRankSum=0.782;SOR=0.411;set=HC	GT:AD:AF:DP	0/1:56,19:0.25:75
chr17	47000251	rs1058018	C	T	1110.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:44,54:0.55:98
chr17	47007963	rs2270576	C	T	3005.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:174,151:0.46:325
chr17	47010795	rs72523750	CAG	C	1678.73	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:48,48:0.50:96
chr17	47011897	rs57901004	C	T	590.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.142;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=2.898;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.95;ReadPosRankSum=1.417;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:51,34:0.40:85
chr17	47011972	.	C	CA	112.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.339;ClippingRankSum=0.000;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.66;ReadPosRankSum=-1.947;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:52,16:0.24:68
chr17	47013382	rs140139274	G	GTTTGT	1809.73	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:53,44:0.45:97
chr17	47013717	rs3215074	AT	A	748.73	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:41,48:0.54:89
chr17	47014651	rs5820737	CT	C	10941.73	.	AC=1;AF=0.500;AN=2;DB;DP=749;set=Intersection	GT:AD:AF:DP	0/1:404,329:0.45:733
chr17	47014675	rs2132201	C	T	20719.77	.	AC=2;AF=1.00;AN=2;DB;DP=580;set=Intersection	GT:AD:AF:DP	1/1:0,576:1.00:576
chr17	47014754	rs2132200	T	C	5274.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr17	47035869	rs4793605	T	C	574.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:25,26:0.51:51
chr17	47036042	rs55936433	C	A	1949.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:110,98:0.47:208
chr17	47038391	rs6504587	T	C	3170.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr17	47038434	rs75421129	G	C	431.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:25,22:0.47:47
chr17	47038471	rs4794004	A	G	309.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:10,14:0.58:24
chr17	47039132	rs2291725	T	C	3882.77	.	AC=1;AF=0.500;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	0/1:193,191:0.50:384
chr17	47039254	rs2291726	T	C	2032.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:100,92:0.48:192
chr17	47039302	rs8081301	A	T	855.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:47,37:0.44:84
chr17	47044463	rs62078384	C	T	6716.77	.	AC=1;AF=0.500;AN=2;DB;DP=640;set=Intersection	GT:AD:AF:DP	0/1:312,319:0.51:631
chr17	47044721	.	CTTTT	C	267.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.777;ClippingRankSum=0.000;DP=42;ExcessHet=3.0103;FS=3.222;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.23;ReadPosRankSum=-0.532;SOR=0.160;set=HC	GT:AD:AF:DP	0/1:18,11:0.38:29
chr17	47076551	rs2411760	G	T	2051.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.520;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=5.006;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=36.00;ReadPosRankSum=0.453;SOR=1.646;set=HC	GT:AD:AF:DP	1/1:1,56:0.98:57
chr17	47076557	rs1948513	G	C	773.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.887;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=28.763;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.48;ReadPosRankSum=2.458;SOR=2.337;set=HC	GT:AD:AF:DP	0/1:10,40:0.80:50
chr17	47210429	rs7207842	A	G	5839.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr17	47210506	rs7207403	C	A	3766.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr17	47230360	rs62079773	T	G	9558.77	.	AC=2;AF=1.00;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	1/1:0,348:1.00:348
chr17	47237802	rs1523137	A	G	2050.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr17	47238028	rs8071836	C	T	7683.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr17	47241604	rs8074457	T	C	13019.77	.	AC=2;AF=1.00;AN=2;DB;DP=485;set=Intersection	GT:AD:AF:DP	1/1:0,478:1.00:478
chr17	47243622	rs16970025	G	T	1744.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr17	47284638	.	C	T	855.77	.	AC=1;AF=0.500;AN=2;DP=58;set=Intersection	GT:AD:AF:DP	0/1:20,35:0.64:55
chr17	47297297	rs616338	T	C	6477.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.41;SOR=0.747;set=HC	GT:AD:AF:DP	1/1:0,228:1.00:228
chr17	47299789	rs55978930	A	G	3240.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr17	47329610	.	G	C	3082.77	.	AC=1;AF=0.500;AN=2;DP=275;set=Intersection	GT:AD:AF:DP	0/1:133,136:0.51:269
chr17	47484228	rs2233667	G	C	2846.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:184,147:0.44:331
chr17	47587712	rs2072445	G	T	1916.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:97,86:0.47:183
chr17	47588000	rs11466155	C	T	5192.77	.	AC=1;AF=0.500;AN=2;DB;DP=577;set=Intersection	GT:AD:AF:DP	0/1:304,259:0.46:563
chr17	47685200	rs17644409	C	G	3732.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:162,185:0.53:347
chr17	47688881	rs140209761	T	TAGAG	3956.73	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr17	47696586	rs2066747	GA	G	10614.73	.	AC=1;AF=0.500;AN=2;DB;DP=629;set=Intersection	GT:AD:AF:DP	0/1:275,342:0.55:617
chr17	47696820	rs7219984	G	A	856.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:27,35:0.56:62
chr17	47700315	rs3815474	G	A	795.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:31,35:0.53:66
chr17	47779288	rs34701118	C	CA	795.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.030;ClippingRankSum=0.000;DB;DP=248;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.317;QD=3.63;ReadPosRankSum=-0.170;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:136,83:0.38:219
chr17	47780710	rs201296363	GCACA	G,GCA	1468.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.788;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=26.23;ReadPosRankSum=-0.717;SOR=0.614;set=HC	GT:AD:AF:DP	1/2:4,9,43:0.16,0.77:56
chr17	47785064	rs9908959	C	A	1720.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:1,61:0.98:62
chr17	47795035	rs35495960	G	A	1807.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:87,87:0.50:174
chr17	47801651	rs11079874	A	G	1440.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr17	47888852	rs4462645	A	G	10253.77	.	AC=2;AF=1.00;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	1/1:0,388:1.00:388
chr17	47899280	rs373603649	TA	T	182.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.335;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=1.860;QD=3.38;ReadPosRankSum=-1.529;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:31,23:0.43:54
chr17	47921469	.	G	C	5160.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.380;ClippingRankSum=0.000;DP=506;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.28;ReadPosRankSum=-1.329;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:255,247:0.49:502
chr17	47923640	rs11297059	AT	A	1138.90	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.106;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=1.109;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.523;QD=9.90;ReadPosRankSum=-0.451;SOR=0.936;set=HC	GT:AD:AF:DP	0/1:23,92:0.80:115
chr17	48046775	rs58769681	G	A	3653.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:111,150:0.57:261
chr17	48068720	rs8081044	T	A	411.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr17	48141334	rs55827079	G	A	783.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:56,38:0.40:94
chr17	48148413	rs2301628	G	A	224.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:18,11:0.38:29
chr17	48149386	rs2269772	C	T	4548.77	.	AC=1;AF=0.500;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	0/1:199,214:0.52:413
chr17	48151353	rs2285524	T	C	5230.77	.	AC=1;AF=0.500;AN=2;DB;DP=504;set=Intersection	GT:AD:AF:DP	0/1:254,239:0.48:493
chr17	48151908	rs4793639	T	C	12979.77	.	AC=2;AF=1.00;AN=2;DB;DP=489;set=Intersection	GT:AD:AF:DP	1/1:2,481:1.00:483
chr17	48153905	rs3216895	TGGG	T	7612.73	.	AC=1;AF=0.500;AN=2;DB;DP=401;MQ=60.11;set=Intersection	GT:AD:AF:DP	0/1:172,196:0.53:368
chr17	48153924	rs2301627	T	C	5129.77	.	AC=1;AF=0.500;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	0/1:201,218:0.52:419
chr17	48155425	rs2230392	G	A	3050.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:119,133:0.53:252
chr17	48155771	rs16948648	C	T	2244.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:90,101:0.53:191
chr17	48157501	rs2301625	A	T	1239.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:60,56:0.48:116
chr17	48157608	rs1107439	G	A	3864.77	.	AC=1;AF=0.500;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	0/1:186,184:0.50:370
chr17	48157825	.	T	TGG	879.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.606;ClippingRankSum=0.000;DP=85;ExcessHet=3.0103;FS=3.509;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.57;ReadPosRankSum=0.095;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:30,40:0.57:70
chr17	48157827	.	GGTGT	G	260.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.957;ClippingRankSum=0.000;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.01;ReadPosRankSum=2.772;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:41,11:0.21:52
chr17	48157869	.	T	A	369	.	AC=1;AF=0.500;AN=2;BRF=0.36;FR=0.5000;HP=2;HapScore=2;MGOF=39;MMLQ=28;MQ=60.0;NF=0;NR=17;PP=369;QD=23.7512477969;SC=TGTGTGTGTGTGATTTGCGTG;SbPval=1.0;Source=Platypus;TC=46;TCF=7;TCR=39;TR=17;WE=48157877;WS=48157859;set=Platypus	GT:AD:AF:DP	1/0:29,17:0.37:46
chr17	48157869	.	T	TGTGA	290.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.436;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=2.831;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.03;ReadPosRankSum=1.861;SOR=1.863;set=HC	GT:AD:AF:DP	0/1:16,13:0.45:29
chr17	48158586	rs3834595	AG	A	597.73	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:26,22:0.46:48
chr17	48158843	rs3785925	G	C	2940.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:139,135:0.49:274
chr17	48165064	rs12951197	T	C	895.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:47,45:0.49:92
chr17	48172779	rs7221362	A	C	6474.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr17	48174908	rs9839	C	T	12208.77	.	AC=2;AF=1.00;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	1/1:0,449:1.00:449
chr17	48184288	rs847694	G	A	10698.77	.	AC=2;AF=1.00;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	1/1:0,370:1.00:370
chr17	48184377	rs847693	A	G	12978.77	.	AC=2;AF=1.00;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	1/1:0,464:1.00:464
chr17	48186131	rs3059824	T	TCTC	6945.73	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr17	48186817	rs56409353	C	G	1896.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:114,87:0.43:201
chr17	48187470	rs60269840	G	A	2930.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:74,135:0.65:209
chr17	48187546	rs61328000	G	C	1340.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:23,52:0.69:75
chr17	48191818	rs77267183	A	C	4015.77	.	AC=1;AF=0.500;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	0/1:162,178:0.52:340
chr17	48202129	rs202016696	G	GCA	610.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.676;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.41;MQRankSum=-3.241;QD=27.76;ReadPosRankSum=1.651;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:8,14:0.64:22
chr17	48202135	.	GCACACACACA	G	733.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.659;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=4.803;MLEAC=1;MLEAF=0.500;MQ=61.78;MQRankSum=0.000;QD=29.35;ReadPosRankSum=2.040;SOR=3.126;set=HC	GT:AD:AF:DP	0/1:8,17:0.68:25
chr17	48202147	.	A	G	354.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.619;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.78;MQRankSum=-2.467;QD=12.23;ReadPosRankSum=0.657;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:14,15:0.52:29
chr17	48202149	.	A	G	722.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.441;ClippingRankSum=0.000;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.72;MQRankSum=-2.917;QD=24.09;ReadPosRankSum=1.124;SOR=1.220;set=HC	GT:AD:AF:DP	0/1:12,18:0.60:30
chr17	48212647	rs11317638	GA	G	1713.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.44;QD=35.70;SOR=2.030;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr17	48212910	rs3744535	A	G	2008.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:94,94:0.50:188
chr17	48216944	rs1569116	C	T	5331.77	.	AC=1;AF=0.500;AN=2;DB;DP=537;set=Intersection	GT:AD:AF:DP	0/1:264,262:0.50:526
chr17	48226445	rs112058541	G	GC	2979.73	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr17	48226811	rs74676292	C	T	10026.77	.	AC=1;AF=0.500;AN=2;DB;DP=814;set=Intersection	GT:AD:AF:DP	0/1:358,449:0.56:807
chr17	48227384	.	G	GGC	12715.73	.	AC=2;AF=1.00;AN=2;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr17	48227403	.	G	GGC	10968.73	.	AC=2;AF=1.00;AN=2;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr17	48243504	rs9911548	C	T	4855.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr17	48245180	rs2696297	C	T	9468.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:0,326:1.00:326
chr17	48247689	rs1801191	C	T	4331.77	.	AC=1;AF=0.500;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	0/1:205,210:0.51:415
chr17	48249450	rs2696293	C	G	5152.77	.	AC=1;AF=0.500;AN=2;DB;DP=490;set=Intersection	GT:AD:AF:DP	0/1:235,243:0.51:478
chr17	48249801	rs2696292	C	A	784.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:39,34:0.47:73
chr17	48252804	rs2696288	T	C	5516.77	.	AC=1;AF=0.500;AN=2;DB;DP=502;set=Intersection	GT:AD:AF:DP	0/1:234,257:0.52:491
chr17	48253226	rs73987439	A	G	3229.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:142,152:0.52:294
chr17	48258140	rs2586484	T	C	7317.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr17	48258284	.	G	GA	292.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.423;ClippingRankSum=0.000;DP=334;ExcessHet=3.0103;FS=1.315;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.000;QD=1.08;ReadPosRankSum=0.281;SOR=0.562;set=HC	GT:AD:AF:DP	0/1:215,55:0.20:270
chr17	48258321	rs2586485	C	T	6094.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr17	48263021	rs2249492	C	T	1980.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:87,93:0.52:180
chr17	48264717	rs2696245	C	T	767.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr17	48265426	rs2586488	A	G	14932.77	.	AC=2;AF=1.00;AN=2;DB;DP=542;set=Intersection	GT:AD:AF:DP	1/1:0,537:1.00:537
chr17	48265495	rs1800215	T	C	4861.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr17	48266669	rs2586489	G	C	17486.77	.	AC=2;AF=1.00;AN=2;DB;DP=632;set=Intersection	GT:AD:AF:DP	1/1:0,623:1.00:623
chr17	48267291	rs2075559	G	C	5223.77	.	AC=1;AF=0.500;AN=2;DB;DP=517;set=Intersection	GT:AD:AF:DP	0/1:258,249:0.49:507
chr17	48268223	rs2734272	A	G	12346.77	.	AC=2;AF=1.00;AN=2;DB;DP=485;set=Intersection	GT:AD:AF:DP	1/1:0,474:1.00:474
chr17	48268626	rs2696246	A	G	8850.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr17	48269302	rs2857396	G	A	17033.77	.	AC=2;AF=1.00;AN=2;DB;DP=639;set=Intersection	GT:AD:AF:DP	1/1:0,631:1.00:631
chr17	48269426	rs2586490	C	T	8292.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:1,302:1.00:303
chr17	48270098	rs1800695	G	A	5020.77	.	AC=1;AF=0.500;AN=2;DB;DP=551;set=Intersection	GT:AD:AF:DP	0/1:294,244:0.45:538
chr17	48271433	rs1007086	A	G	7587.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr17	48272055	rs2253369	C	T	9274.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.058;ClippingRankSum=0.000;DB;DP=379;ExcessHet=3.0103;FS=2.070;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.13;ReadPosRankSum=-1.500;SOR=0.398;set=HC	GT:AD:AF:DP	1/1:3,366:0.99:369
chr17	48273439	rs2734281	T	C	7387.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr17	48273464	rs2141279	T	C	8491.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr17	48274291	rs2075555	T	G	1507.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr17	48274309	rs2075554	T	C	2036.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr17	48276004	rs5820805	G	GC	3100.73	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr17	48276971	rs2256835	G	C	2822.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:166,132:0.44:298
chr17	48277059	rs150854949	AGCCCCAGGCCCCAGGCCCCAG	A,AGCCCCAGGCCCCAG	4653.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=274;set=Intersection	GT:AF:DP	1/2:0.44,0.54:198
chr17	48277079	.	AG	A	1312	.	AC=1;AF=0.500;AN=2;BRF=0.34;FR=0.5000;HP=4;HapScore=2;MGOF=76;MMLQ=24;MQ=60.3;NF=44;NR=61;PP=1312;QD=12.5904761905;SC=CCCAGGCCCCAGGCCCCAGGC;SbPval=0.59;Source=Platypus;TC=142;TCF=61;TCR=81;TR=105;WE=48277087;WS=48277069;set=Platypus	GT:AD:AF:DP	1/0:37,105:0.74:142
chr17	48423418	rs9912067	G	C	94.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:17,6:0.26:23
chr17	48431032	rs739990	G	A	3470.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:157,165:0.51:322
chr17	48431197	rs739989	C	T	1930.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:114,86:0.43:200
chr17	48432042	rs11430429	G	GA	6204.73	.	AC=2;AF=1.00;AN=2;DB;DP=159;MQ=60.07;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr17	48432324	rs12451299	G	C	3161.77	.	AC=1;AF=0.500;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	0/1:181,159:0.47:340
chr17	48432749	rs73344091	G	C	1976.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:82,88:0.52:170
chr17	48433081	rs886568	G	A	8089.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr17	48433958	rs4794136	T	C	27612.77	.	AC=2;AF=1.00;AN=2;DB;DP=1061;set=Intersection	GT:AD:AF:DP	1/1:2,1048:1.00:1050
chr17	48440467	.	T	TA	664.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.623;ClippingRankSum=0.000;DP=365;ExcessHet=3.0103;FS=1.097;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.03;ReadPosRankSum=1.514;SOR=0.591;set=HC	GT:AD:AF:DP	0/1:238,89:0.27:327
chr17	48440522	rs10656180	T	TCCA	18737.73	.	AC=2;AF=1.00;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	1/1:0,416:1.00:416
chr17	48445674	rs111380254	CCTGGTCAG	C	5456.73	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:3,199:0.99:202
chr17	48446130	rs17776853	A	G	1189.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:44,58:0.57:102
chr17	48448023	rs16948951	C	G	2046.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:61,86:0.59:147
chr17	48452776	rs3760413	A	C	10535.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	1/1:2,372:0.99:374
chr17	48452978	rs3060668	A	AAGC	30289.73	.	AC=2;AF=1.00;AN=2;DB;DP=710;set=Intersection	GT:AD:AF:DP	1/1:1,667:1.00:668
chr17	48455985	rs2189712	A	T	1410.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:57,59:0.51:116
chr17	48456193	rs12450550	T	C	4138.77	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:152,187:0.55:339
chr17	48457567	rs917029	G	A	526.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:28,22:0.44:50
chr17	48457609	rs917028	C	G	796.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:50,39:0.44:89
chr17	48460745	rs3744525	C	G	218.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:7,10:0.59:17
chr17	48465636	rs3760412	A	G	1296.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:56,54:0.49:110
chr17	48469724	rs757509	T	C	819.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:25,34:0.58:59
chr17	48472270	rs3760407	C	T	3031.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr17	48474501	rs72832501	G	A	3277.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:156,148:0.49:304
chr17	48504132	rs9901133	A	G	2586.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:74,104:0.58:178
chr17	48539035	rs9674937	T	C	5396.77	.	AC=1;AF=0.500;AN=2;DB;DP=527;set=Intersection	GT:AD:AF:DP	0/1:253,270:0.52:523
chr17	48539997	rs8082089	T	C	3849.77	.	AC=1;AF=0.500;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	0/1:160,178:0.53:338
chr17	48540960	rs3744522	C	G	2308.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:78,96:0.55:174
chr17	48541443	rs2277630	G	C	1682.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:64,71:0.53:135
chr17	48541707	rs898455	G	A	1716.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:69,79:0.53:148
chr17	48542572	rs898454	C	G	3190.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:107,143:0.57:250
chr17	48546232	rs2412325	G	C	434.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:27,22:0.45:49
chr17	48556228	rs151222980	C	CGCGCT	504.73	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:21,13:0.38:34
chr17	48557326	rs2290862	G	A	3022.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:129,136:0.51:265
chr17	48557348	rs2290861	T	C	3531.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:145,162:0.53:307
chr17	48559559	rs7210579	A	G	4685.77	.	AC=1;AF=0.500;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	0/1:180,221:0.55:401
chr17	48560550	.	A	AAAAG	564.73	.	AC=2;AF=1.00;AN=2;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=64.40;QD=33.22;SOR=2.712;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr17	48560883	rs1551717	A	G	1676.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:62,77:0.55:139
chr17	48562047	rs72834177	T	G	2633.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:122,123:0.50:245
chr17	48595109	rs56994118	T	C	674.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:31,33:0.52:64
chr17	48595988	rs8064455	G	C	2167.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:106,104:0.50:210
chr17	48596499	rs79976200	A	AG	584.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.074;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=5.557;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.44;ReadPosRankSum=-1.843;SOR=0.242;set=HC	GT:AD:AF:DP	0/1:30,26:0.46:56
chr17	48597114	rs28498091	C	T	1824.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:89,86:0.49:175
chr17	48598785	rs1380657	G	A	5147.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr17	48599195	rs9893172	T	C	1123.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr17	48599450	rs7216625	A	T	4751.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr17	48602098	rs373928628	T	TGTGAGAGA,TGTGTGTGTGTGA,TGTGAGA,TGTGTGTGTGTGTGA	1622.73	.	AC=1,1,0,0;AF=0.500,0.500,0.00,0.00;AN=2;DB;DP=94;set=Intersection	GT:AF:DP	1/2:0.42,0.46:74
chr17	48602412	rs1106730	C	A	2481.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:116,118:0.50:234
chr17	48603503	rs9890721	C	T	2633.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:110,121:0.52:231
chr17	48603775	rs149225883	C	CTATTTATT	708.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr17	48605780	rs8067733	C	G	4742.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr17	48606313	rs2290864	G	A	4983.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr17	48606537	rs1133818	C	G	3134.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr17	48606606	rs4793659	G	A	960.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr17	48607280	rs6504671	G	C	8278.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.952;ClippingRankSum=0.000;DB;DP=315;ExcessHet=3.0103;FS=3.501;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.79;ReadPosRankSum=-0.566;SOR=0.590;set=HC	GT:AD:AF:DP	1/1:1,308:1.00:309
chr17	48607614	rs4794156	G	A	278.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:29,16:0.36:45
chr17	48608717	rs1064055	T	C	3651.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr17	48608951	rs2277627	C	T	422.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr17	48610272	rs755046	G	C	1822.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr17	48613837	rs3785915	A	G	12953.77	.	AC=2;AF=1.00;AN=2;DB;DP=488;set=Intersection	GT:AD:AF:DP	1/1:0,483:1.00:483
chr17	48615329	rs2306001	G	A	3133.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:135,141:0.51:276
chr17	48616114	rs4794158	C	G	1322.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:60,61:0.50:121
chr17	48617493	rs62059698	A	G	1337.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:68,64:0.48:132
chr17	48619272	rs111678638	G	A	4635.77	.	AC=1;AF=0.500;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	0/1:244,224:0.48:468
chr17	48619290	rs112657244	G	A	4584.77	.	AC=1;AF=0.500;AN=2;DB;DP=455;set=Intersection	GT:AD:AF:DP	0/1:226,221:0.49:447
chr17	48624523	rs9890200	A	C	787.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:50,40:0.44:90
chr17	48625543	rs12943759	G	A	4096.77	.	AC=1;AF=0.500;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	0/1:180,185:0.51:365
chr17	48625828	rs8076470	C	T	11410.77	.	AC=1;AF=0.500;AN=2;DB;DP=1060;set=Intersection	GT:AD:AF:DP	0/1:510,544:0.52:1054
chr17	48625928	rs8076632	C	G	6360.77	.	AC=1;AF=0.500;AN=2;DB;DP=527;set=Intersection	GT:AD:AF:DP	0/1:253,267:0.51:520
chr17	48626389	rs8077316	C	T	6594.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.120;ClippingRankSum=0.000;DB;DP=408;ExcessHet=3.0103;FS=1.745;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.40;ReadPosRankSum=0.889;SOR=0.821;set=HC	GT:AD:AF:DP	0/1:226,176:0.44:402
chr17	48626398	rs8077323	C	T	6585.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.343;ClippingRankSum=0.000;DB;DP=413;ExcessHet=3.0103;FS=3.245;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.22;ReadPosRankSum=0.230;SOR=0.944;set=HC	GT:AD:AF:DP	0/1:226,180:0.44:406
chr17	48626575	rs8077587	C	T	3839.77	.	AC=1;AF=0.500;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	0/1:203,175:0.46:378
chr17	48626626	rs8076628	G	A	3925.77	.	AC=1;AF=0.500;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	0/1:217,188:0.46:405
chr17	48627860	rs10586811	CCT	C	5960.73	.	AC=1;AF=0.500;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	0/1:231,168:0.42:399
chr17	48628092	rs1132414	A	G	8809.77	.	AC=1;AF=0.500;AN=2;DB;DP=864;set=Intersection	GT:AD:AF:DP	0/1:443,415:0.48:858
chr17	48628470	rs9913430	T	A	2388.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:107,112:0.51:219
chr17	48628581	rs9913677	T	A	997.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:30,44:0.59:74
chr17	48629312	rs8082568	G	C	1080.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:37,47:0.56:84
chr17	48629458	rs8065903	A	G	9609.77	.	AC=2;AF=1.00;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	1/1:0,352:1.00:352
chr17	48631607	rs739924	T	C	6632.77	.	AC=1;AF=0.500;AN=2;DB;DP=717;set=Intersection	GT:AD:AF:DP	0/1:376,335:0.47:711
chr17	48631857	rs873839	G	A	735.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:41,32:0.44:73
chr17	48646346	.	AGT	A,AGTGTGTGTGTGT	107.73	.	AC=1,0;AF=0.500,0.00;AN=2;DP=145;set=Intersection	GT:AF:DP	0/1:0.15:79
chr17	48646376	.	T	TGTGTGTGTGTGTTG	481.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.510;ClippingRankSum=0.000;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.35;MQRankSum=4.288;QD=6.02;ReadPosRankSum=1.037;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:55,25:0.31:80
chr17	48647011	rs12946808	T	G	13642.77	.	AC=2;AF=1.00;AN=2;DB;DP=507;set=Intersection	GT:AD:AF:DP	1/1:0,503:1.00:503
chr17	48652875	rs198550	A	G	1308.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr17	48653354	rs12449998	C	A	39230.77	.	AC=2;AF=1.00;AN=2;DB;DP=1469;set=Intersection	GT:AD:AF:DP	1/1:3,1444:1.00:1447
chr17	48668013	rs8064333	G	C	13795.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr17	48668021	rs34926473	AT	A	13266.73	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr17	48668091	rs8066026	A	C	2995.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr17	48668653	rs7359536	A	G	1036.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr17	48668720	rs7359527	C	A	1719.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr17	48669026	rs11079918	T	C	6172.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr17	48678325	rs198530	A	T	11253.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	1/1:0,374:1.00:374
chr17	48683200	rs3744521	G	C	1929.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:67,85:0.56:152
chr17	48687430	rs11658835	C	T	431.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:31,21:0.40:52
chr17	48692881	rs8066527	C	T	4457.77	.	AC=1;AF=0.500;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	0/1:221,213:0.49:434
chr17	48693760	rs4794171	G	C	1493.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:65,74:0.53:139
chr17	48698906	rs4794172	C	A	909.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:41,40:0.49:81
chr17	48703752	rs739925	T	C	8162.77	.	AC=1;AF=0.500;AN=2;DB;DP=709;set=Intersection	GT:AD:AF:DP	0/1:348,354:0.50:702
chr17	48712263	rs112259322	C	A	1445.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:30,64:0.68:94
chr17	48712705	rs12604031	G	A	4977.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.004;ClippingRankSum=0.000;DB;DP=259;ExcessHet=3.0103;FS=1.532;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=-0.996;QD=19.52;ReadPosRankSum=1.280;SOR=0.585;set=HC	GT:AD:AF:DP	0/1:127,128:0.50:255
chr17	48712711	rs9890046	C	G	5024.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.125;ClippingRankSum=0.000;DB;DP=261;ExcessHet=3.0103;FS=0.462;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=-1.004;QD=19.55;ReadPosRankSum=1.429;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:127,130:0.51:257
chr17	48736748	rs34576333	C	G	1095.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:54,51:0.49:105
chr17	48738266	rs2301837	C	T	1078.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:62,44:0.42:106
chr17	48746135	rs879459	C	T	10247.77	.	AC=2;AF=1.00;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	1/1:0,363:1.00:363
chr17	48746923	rs4794176	G	C	7841.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr17	48750467	rs139106724	G	A	2565.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:160,124:0.44:284
chr17	48752890	rs2072366	G	A	937.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:56,44:0.44:100
chr17	48753522	rs8077268	C	T	3547.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:155,165:0.52:320
chr17	48755002	rs2240802	G	A	2980.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:108,124:0.53:232
chr17	48761053	rs11568591	G	A	3214.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.276;ClippingRankSum=0.000;DB;DP=326;ExcessHet=3.0103;FS=1.844;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.98;ReadPosRankSum=2.347;SOR=0.815;set=HC	GT:AD:AF:DP	0/1:167,155:0.48:322
chr17	48777806	.	G	GA	166.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.659;ClippingRankSum=0.000;DP=48;ExcessHet=3.0103;FS=1.568;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.17;ReadPosRankSum=-0.963;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:28,12:0.30:40
chr17	48777820	rs202228092	AAG	A	523.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.699;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=1.406;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.18;ReadPosRankSum=1.084;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:15,28:0.65:43
chr17	48777822	rs6504677	G	A	174.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.056;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=1.406;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.06;ReadPosRankSum=-0.944;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:28,15:0.35:43
chr17	48785100	rs3744519	C	A	3155.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=10.862;ClippingRankSum=0.000;DB;DP=228;ExcessHet=3.0103;FS=2.147;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.90;ReadPosRankSum=-1.027;SOR=1.023;set=HC	GT:AD:AF:DP	0/1:111,116:0.51:227
chr17	48797210	rs11398903	T	TG	10061.73	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr17	48801239	rs117687704	G	A	1106.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:35,49:0.58:84
chr17	48801314	rs12449971	C	T	1206.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:149,69:0.32:218
chr17	48817598	rs3214295	C	CT	651.73	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:52,41:0.44:93
chr17	48821201	rs9894501	T	C	8610.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.42;SOR=1.236;set=HC	GT:AD:AF:DP	1/1:0,203:1.00:203
chr17	48821207	rs9894508	T	C	8275.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.98;SOR=1.338;set=HC	GT:AD:AF:DP	1/1:0,180:1.00:180
chr17	48823815	rs2302288	C	T	457.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr17	48828384	rs11385262	G	GT	469.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.066;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=3.978;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=0.000;QD=6.71;ReadPosRankSum=1.683;SOR=1.308;set=HC	GT:AD:AF:DP	0/1:36,34:0.49:70
chr17	48834023	rs3760403	A	G	296.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.648;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=22.83;ReadPosRankSum=0.428;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:4,9:0.69:13
chr17	48834032	rs3760402	G	A	280.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.509;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=23.40;ReadPosRankSum=0.955;SOR=1.445;set=HC	GT:AD:AF:DP	0/1:4,8:0.67:12
chr17	48834080	rs9303561	A	G	445.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.684;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.69;ReadPosRankSum=0.118;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:27,31:0.53:58
chr17	48834194	rs12600608	A	G	2511.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:102,120:0.54:222
chr17	48917333	rs9675120	C	T	26566.77	.	AC=2;AF=1.00;AN=2;DB;DP=993;set=Intersection	GT:AD:AF:DP	1/1:4,978:1.00:982
chr17	48940422	rs4626	T	C	4236.77	.	AC=1;AF=0.500;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	0/1:177,198:0.53:375
chr17	49041948	.	C	CA	277.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.326;ClippingRankSum=0.000;DP=61;ExcessHet=3.0103;FS=3.776;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.91;ReadPosRankSum=0.657;SOR=0.228;set=HC	GT:AD:AF:DP	0/1:26,21:0.45:47
chr17	49048274	.	G	GT	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.062;ClippingRankSum=0.000;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.68;ReadPosRankSum=-0.865;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:44,13:0.23:57
chr17	49053072	.	TA	T	93.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.494;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;FS=3.565;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=1.343;QD=1.95;ReadPosRankSum=1.329;SOR=1.581;set=HC	GT:AD:AF:DP	0/1:33,15:0.31:48
chr17	49054439	rs9332407	T	C	3198.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:148,143:0.49:291
chr17	49060107	rs12453116	T	G	1009.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:41,44:0.52:85
chr17	49067763	rs9899816	T	C	982.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:46,43:0.48:89
chr17	49076907	rs61490626	TA	T	525.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.342;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=8.660;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.73;ReadPosRankSum=-1.348;SOR=0.921;set=HC	GT:AD:AF:DP	0/1:28,40:0.59:68
chr17	49084471	.	GGT	G	303.73	.	AC=1;AF=0.500;AN=2;DP=40;set=Intersection	GT:AD:AF:DP	0/1:23,15:0.39:38
chr17	49097501	rs2286649	C	A	2589.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.243;ClippingRankSum=0.000;DB;DP=273;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.59;ReadPosRankSum=-1.249;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:139,131:0.49:270
chr17	49124845	rs11400140	G	GA	434.73	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:26,24:0.48:50
chr17	49124944	rs12453437	C	T	174.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,8:0.67:12
chr17	49156907	rs8081821	A	G	1722.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:97,85:0.47:182
chr17	49197654	rs5820842	A	AC	2784.73	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.24;QD=32.01;SOR=3.391;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr17	49231623	rs34431255	C	G	1344.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.085;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=2.147;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.42;ReadPosRankSum=-0.465;SOR=0.985;set=HC	GT:AD:AF:DP	0/1:40,33:0.45:73
chr17	49231627	rs11556835	G	A	1417.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.186;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=3.248;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.88;ReadPosRankSum=-1.750;SOR=1.136;set=HC	GT:AD:AF:DP	0/1:43,41:0.49:84
chr17	49247503	.	C	CT	241.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.336;ClippingRankSum=0.000;DP=153;ExcessHet=3.0103;FS=3.812;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.49;ReadPosRankSum=1.106;SOR=1.287;set=HC	GT:AD:AF:DP	0/1:65,32:0.33:97
chr17	49270643	rs35987233	AT	A	62.73	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:9,4:0.31:13
chr17	49271018	rs12453388	G	A	136.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:9,7:0.44:16
chr17	49281133	rs17574235	G	A	3630.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:135,171:0.56:306
chr17	49350546	rs35339641	AT	A	167.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.887;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.90;ReadPosRankSum=-0.319;SOR=0.330;set=HC	GT:AD:AF:DP	1/1:1,12:0.92:13
chr17	49350802	rs2318789	A	C	2430.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:131,111:0.46:242
chr17	49350959	rs36097713	G	GT	198.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.695;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=3.724;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.10;ReadPosRankSum=1.626;SOR=0.116;set=HC	GT:AD:AF:DP	0/1:21,18:0.46:39
chr17	49371230	rs12940196	G	C	484.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:28,22:0.44:50
chr17	49371505	rs917654	C	G	77.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:19,6:0.24:25
chr17	49567749	rs12603818	T	C	6044.77	.	AC=1;AF=0.500;AN=2;DB;DP=554;set=Intersection	GT:AD:AF:DP	0/1:259,289:0.53:548
chr17	49711041	rs59307927	A	ACCC	1147.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.486;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=3.154;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=1.093;QD=17.39;ReadPosRankSum=-0.032;SOR=1.351;set=HC	GT:AD:AF:DP	0/1:35,31:0.47:66
chr17	49711042	rs60848939	A	C	1156.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=4.963;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=3.113;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.80;ReadPosRankSum=-0.614;SOR=1.300;set=HC	GT:AD:AF:DP	0/1:35,30:0.46:65
chr17	49711045	rs2286634	A	G	731.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.740;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=3.164;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.80;ReadPosRankSum=1.119;SOR=0.301;set=HC	GT:AD:AF:DP	0/1:29,33:0.53:62
chr17	49713428	rs139939914	GACAT	G	1947.73	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr17	50149899	rs5820905	C	CT	1122.27	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.428;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=1.655;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=0.465;QD=14.03;ReadPosRankSum=0.510;SOR=1.385;set=HC	GT:AD:AF:DP	0/1:12,68:0.85:80
chr17	51063941	rs2271474	C	G	6957.77	.	AC=1;AF=0.500;AN=2;DB;DP=739;set=Intersection	GT:AD:AF:DP	0/1:382,346:0.48:728
chr17	51900729	rs3803824	C	T	21633.77	.	AC=2;AF=1.00;AN=2;DB;DP=812;set=Intersection	GT:AD:AF:DP	1/1:2,792:1.00:794
chr17	51901084	rs3803825	A	G	13449.77	.	AC=2;AF=1.00;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	1/1:0,445:1.00:445
chr17	51901643	rs4561518	C	T	5643.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr17	51901703	rs4561519	C	G	4679.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr17	51902252	rs3826355	C	T	6963.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr17	51902492	rs10693171	A	AAAT	2931.73	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr17	52982672	rs118102659	C	T	1284.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:55,56:0.50:111
chr17	52989920	rs72829469	G	A	126.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:8,6:0.43:14
chr17	52991026	rs58570485	CAAAAAA	C,CAAAAA	1304.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.092;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=1.456;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.15;MQRankSum=0.503;QD=21.39;ReadPosRankSum=-0.482;SOR=1.106;set=HC	GT:AD:AF:DP	1/2:9,36,16:0.59,0.26:61
chr17	52992128	rs3834969	TA	T	6668.73	.	AC=1;AF=0.500;AN=2;DB;DP=513;set=Intersection	GT:AD:AF:DP	0/1:256,245:0.49:501
chr17	52993346	rs2934935	G	A	1890.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr17	53007655	rs12939352	T	G	607.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:28,25:0.47:53
chr17	53014232	rs5821077	A	ATTAAG	352.73	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:10,10:0.50:20
chr17	53014442	rs5821078	C	CT	867.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.483;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=4.938;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.40;ReadPosRankSum=-1.614;SOR=1.076;set=HC	GT:AD:AF:DP	0/1:122,75:0.38:197
chr17	53038082	rs2287136	G	A	112.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr17	53038430	rs4793784	A	G	733.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:31,31:0.50:62
chr17	53038783	rs1057980	G	A	747.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:48,37:0.44:85
chr17	53042017	rs55801837	C	G	1661.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.302;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.88;ReadPosRankSum=0.728;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:46,42:0.48:88
chr17	53042023	rs56131849	TA	T	1670.73	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:51,45:0.47:96
chr17	53063743	rs958556	C	T	397.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr17	53076799	rs1156287	G	A	7386.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr17	53076986	rs11658717	G	A	11093.77	.	AC=2;AF=1.00;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	1/1:0,400:1.00:400
chr17	53084697	rs141409093	CT	C	163.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.214;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.03;ReadPosRankSum=0.776;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:34,20:0.37:54
chr17	53084790	rs12051573	C	T	2277.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:104,109:0.51:213
chr17	53120855	rs1894936	A	G	656.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:37,26:0.41:63
chr17	53121020	rs17818142	A	G	5108.73	.	AC=1;AF=0.500;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	0/1:224,241:0.52:465
chr17	53124546	rs149633875	CGTGTGT	C,CGTGTGTGT	609.73	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=45;set=Intersection	GT:AF:DP	0/1:0.60:25
chr17	53158361	rs2628302	G	A	2941.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:2,105:0.98:107
chr17	53158492	rs8069999	G	A	2976.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:164,151:0.48:315
chr17	53392852	rs2287223	G	A	2009.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:98,92:0.48:190
chr17	53392912	rs1465353	G	A	688.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:29,26:0.47:55
chr17	53478675	rs3744308	A	G	1417.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr17	53485186	rs2286806	C	T	1253.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:110,62:0.36:172
chr17	53828706	rs890488	C	G	3758.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr17	53844833	rs57156382	CT	C	4009.73	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:5,200:0.98:205
chr17	53844847	rs35430620	C	T	5644.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr17	53851071	rs2960063	A	G	4744.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.34;SOR=1.106;set=HC	GT:AD:AF:DP	1/1:0,107:1.00:107
chr17	53851078	rs2912558	T	C	4858.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.007;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=3.826;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=43.77;ReadPosRankSum=2.444;SOR=0.837;set=HC	GT:AD:AF:DP	1/1:1,110:0.99:111
chr17	53851228	rs2960062	C	T	6430.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr17	53852111	rs2960061	T	C	2436.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr17	54428067	rs2215756	C	T	525.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:41,23:0.36:64
chr17	54428436	rs17759670	A	G	595.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:22,25:0.53:47
chr17	54450038	rs957724	C	A	1696.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr17	54450134	rs8069322	G	A	4062.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr17	54517855	rs7224536	T	C	1238.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr17	54526301	rs2024316	C	T	2808.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr17	54534634	rs10852985	G	A	2477.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:2,95:0.98:97
chr17	54554821	.	CTT	C	357.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.439;ClippingRankSum=0.000;DP=112;ExcessHet=3.0103;FS=1.052;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=0.000;QD=3.54;ReadPosRankSum=0.930;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:74,27:0.27:101
chr17	54558282	rs68128704	GTA	G	797.73	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:6,30:0.83:36
chr17	54892126	rs4794668	A	G	286.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:30,17:0.36:47
chr17	54912737	rs7225724	A	G	1194.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:46,45:0.49:91
chr17	54921322	rs3760157	G	A	1010.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:53,49:0.48:102
chr17	54921494	rs3760158	A	C	667.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:48,31:0.39:79
chr17	54925262	rs6503775	G	T	853.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.986;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=8.859;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.86;ReadPosRankSum=0.621;SOR=0.186;set=HC	GT:AD:AF:DP	0/1:32,40:0.56:72
chr17	54925480	rs56356802	C	CATAT	590.73	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:44,21:0.32:65
chr17	54939715	rs9911560	T	C	1299.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:50,62:0.55:112
chr17	54939737	rs3826295	T	A	1327.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:35,50:0.59:85
chr17	54972920	rs61731985	G	T	3181.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:158,150:0.49:308
chr17	54978794	rs205498	G	A	1309.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:57,59:0.51:116
chr17	54981571	.	CA	C	581.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.935;ClippingRankSum=0.000;DP=334;ExcessHet=3.0103;FS=3.596;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.000;QD=1.86;ReadPosRankSum=3.093;SOR=0.474;set=HC	GT:AD:AF:DP	0/1:209,104:0.33:313
chr17	54990652	rs59740850	C	CT	863.73	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:35,30:0.46:65
chr17	55026912	rs12942251	A	G	2988.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:123,143:0.54:266
chr17	55027850	rs8071691	T	C	11284.77	.	AC=2;AF=1.00;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	1/1:0,411:1.00:411
chr17	55028170	rs61731978	C	T	1531.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:60,70:0.54:130
chr17	55038062	rs9899845	T	C	475.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:16,20:0.56:36
chr17	55055444	.	A	ACCCGCAGGCCCCGCCCCCGC	331.73	.	AC=1;AF=0.500;AN=2;DP=35;set=Intersection	GT:AD:AF:DP	0/1:24,7:0.23:31
chr17	55058417	rs3095500	A	G	1692.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:57,75:0.57:132
chr17	55058689	rs3095499	G	C	523.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:18,24:0.57:42
chr17	55065558	rs11437466	T	TA	1569.73	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:72,63:0.47:135
chr17	55074482	.	T	TA	410.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.231;ClippingRankSum=0.000;DP=197;ExcessHet=3.0103;FS=4.333;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.70;ReadPosRankSum=-0.446;SOR=0.331;set=HC	GT:AD:AF:DP	0/1:102,50:0.33:152
chr17	55075582	rs1811258	A	G	1470.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:37,52:0.58:89
chr17	55075670	rs367630962	CA	C	270.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.517;ClippingRankSum=0.000;DB;DP=307;ExcessHet=3.0103;FS=0.609;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=2.504;QD=1.00;ReadPosRankSum=-0.044;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:201,70:0.26:271
chr17	55075928	rs12941709	C	T	2073.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:125,96:0.43:221
chr17	55078526	rs67794111	C	T	320.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:12,13:0.52:25
chr17	55182811	rs3833091	CT	C	4516.73	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr17	55183203	rs2230772	T	C	23567.77	.	AC=2;AF=1.00;AN=2;DB;DP=900;set=Intersection	GT:AD:AF:DP	1/1:1,887:1.00:888
chr17	55183716	rs1050515	T	C	4710.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:1,158:0.99:159
chr17	55189723	rs3094444	T	G	4516.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr17	55197802	rs4583	C	A	7220.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr17	55334577	rs371473884	GCCC	G	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.18;ReadPosRankSum=-0.000;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:2,2:0.50:4
chr17	55334793	rs148540229	T	TC	303.73	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:184,37:0.17:221
chr17	55363421	rs11079286	G	C	4555.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr17	55606875	rs55990806	G	GT	3180.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.218;ClippingRankSum=0.000;DB;DP=345;ExcessHet=3.0103;FS=0.441;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=0.943;QD=9.55;ReadPosRankSum=-1.451;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:150,183:0.55:333
chr17	55674375	rs74783910	G	T	1959.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.570;ClippingRankSum=0.000;DB;DP=199;ExcessHet=3.0103;FS=2.686;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.26;ReadPosRankSum=-0.341;SOR=0.501;set=HC	GT:AD:AF:DP	0/1:98,93:0.49:191
chr17	55674423	rs6503820	G	A	1095.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:53,50:0.49:103
chr17	55704465	rs1861474	A	G	5384.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr17	55917353	rs2099914	C	G	10202.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	1/1:3,376:0.99:379
chr17	55944084	rs148019547	G	T	150.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr17	55944566	rs9894704	G	C	1290.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:50,55:0.52:105
chr17	55950064	rs35704289	C	T	6544.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr17	55950363	rs17762330	G	A	875.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:39,36:0.48:75
chr17	55950826	rs11650742	G	A	2847.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr17	55951037	rs17762338	C	T	1655.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:73,79:0.52:152
chr17	56083934	rs2233911	G	A	2287.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:119,106:0.47:225
chr17	56235104	rs3863503	C	A	7875.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr17	56235322	rs1987665	G	A	1398.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr17	56282968	rs17174788	G	C	4994.77	.	AC=1;AF=0.500;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	0/1:207,231:0.53:438
chr17	56286027	.	C	CT	45.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.575;ClippingRankSum=0.000;DP=77;ExcessHet=3.0103;FS=1.522;MLEAC=1;MLEAF=0.500;MQ=59.55;MQRankSum=-2.655;QD=0.80;ReadPosRankSum=-0.469;SOR=1.066;set=HC	GT:AD:AF:DP	0/1:46,11:0.19:57
chr17	56321451	rs67390833	GACAC	G	1132.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.805;ClippingRankSum=0.000;DB;DP=223;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.037;QD=13.98;ReadPosRankSum=-0.747;SOR=1.232;set=HC	GT:AD:AF:DP	0/1:40,41:0.51:81
chr17	56351708	rs72051182	AGT	A	433.74	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:4,19:0.83:23
chr17	56383114	rs72839984	G	A	2777.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.038;ClippingRankSum=0.000;DB;DP=315;ExcessHet=3.0103;FS=1.874;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.87;ReadPosRankSum=-0.258;SOR=0.574;set=HC	GT:AD:AF:DP	0/1:171,142:0.45:313
chr17	56403894	rs72839997	C	T	1324.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:60,55:0.48:115
chr17	56404349	rs2526378	A	G	739.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:20,28:0.58:48
chr17	56424710	rs757485	T	C	1276.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:45,50:0.53:95
chr17	56429672	rs66475354	CA	C	3235.73	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:72,86:0.54:158
chr17	56429675	rs62082090	C	G	3244.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:67,84:0.56:151
chr17	56432362	rs2158460	C	G	1569.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:63,72:0.53:135
chr17	56435885	rs2526374	G	T	2907.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:159,144:0.48:303
chr17	56436109	rs34523089	C	T	2459.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:119,120:0.50:239
chr17	56440542	rs2680700	G	T	1955.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:117,82:0.41:199
chr17	56492800	rs3744093	T	C	7610.77	.	AC=1;AF=0.500;AN=2;DB;DP=748;set=Intersection	GT:AD:AF:DP	0/1:383,362:0.49:745
chr17	56540110	rs3803753	G	A	3472.77	.	AC=1;AF=0.500;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	0/1:206,166:0.45:372
chr17	56540267	rs3803752	C	T	5938.77	.	AC=1;AF=0.500;AN=2;DB;DP=625;set=Intersection	GT:AD:AF:DP	0/1:333,280:0.46:613
chr17	56544280	rs1017089	T	G	13535.77	.	AC=2;AF=1.00;AN=2;DB;DP=505;set=Intersection	GT:AD:AF:DP	1/1:0,495:1.00:495
chr17	56569842	rs75741842	T	TGA	19421.73	.	AC=2;AF=1.00;AN=2;DB;DP=442;set=Intersection	GT:AD:AF:DP	1/1:0,430:1.00:430
chr17	56580997	rs1860262	T	C	1433.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr17	56581651	rs4277402	C	G	9650.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	1/1:0,346:1.00:346
chr17	56584205	rs2302189	A	C	3519.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:130,165:0.56:295
chr17	56585872	rs3744108	G	C	4489.77	.	AC=1;AF=0.500;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	0/1:195,212:0.52:407
chr17	56598213	rs10719315	GA	G	4642.73	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr17	56598439	rs1057068	T	C	4692.77	.	AC=1;AF=0.500;AN=2;DB;DP=494;set=Intersection	GT:AD:AF:DP	0/1:260,226:0.47:486
chr17	56603934	rs376508586	AAC	A	245.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.964;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=10.824;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=1.156;QD=7.45;ReadPosRankSum=1.172;SOR=0.320;set=HC	GT:AD:AF:DP	0/1:18,15:0.45:33
chr17	56603978	rs2079703	G	A	846.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:31,39:0.56:70
chr17	56609525	rs11869828	G	A	123.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr17	56620167	rs17822735	C	T	2555.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:138,121:0.47:259
chr17	56620501	rs17222523	A	G	2814.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:165,137:0.45:302
chr17	56621286	rs8071623	G	T	11073.77	.	AC=2;AF=1.00;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	1/1:5,444:0.99:449
chr17	56621359	rs6503867	T	C	13941.77	.	AC=2;AF=1.00;AN=2;DB;DP=531;set=Intersection	GT:AD:AF:DP	1/1:2,522:1.00:524
chr17	56636854	rs7225128	T	C	7987.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr17	56643109	rs34818467	A	G	4075.77	.	AC=1;AF=0.500;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	0/1:188,205:0.52:393
chr17	56649614	rs144725723	AAAACAAAC	A	1107.73	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:32,30:0.48:62
chr17	56654690	rs1267542	T	C	1908.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:65,92:0.59:157
chr17	56654850	rs7215900	A	T	418.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.726;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.32;ReadPosRankSum=-2.150;SOR=0.906;set=HC	GT:AD:AF:DP	0/1:17,20:0.54:37
chr17	56659018	rs6503870	C	T	852.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:80,46:0.37:126
chr17	56665172	rs145117100	C	A	1766.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:79,83:0.51:162
chr17	56688511	rs142220238	GT	G	4135.73	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:130,136:0.51:266
chr17	56688726	.	G	GA	46.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.109;ClippingRankSum=0.000;DP=37;ExcessHet=3.0103;FS=2.129;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.42;ReadPosRankSum=1.373;SOR=0.250;set=HC	GT:AD:AF:DP	0/1:24,9:0.27:33
chr17	56691034	rs66508449	T	C	1144.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:35,47:0.57:82
chr17	56693799	rs11454189	C	CT	251.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.562;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=1.356;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.72;ReadPosRankSum=-0.761;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:24,20:0.45:44
chr17	56737838	rs17822837	G	A	1505.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:85,72:0.46:157
chr17	56769979	rs12946397	C	T	1171.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:58,54:0.48:112
chr17	56833457	rs201186780	G	GGAACCC	12115.73	.	AC=1;AF=0.500;AN=2;DB;DP=1510;set=Intersection	GT:AD:AF:DP	0/1:558,586:0.51:1144
chr17	57049716	.	C	CT	42.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.645;ClippingRankSum=0.000;DP=160;ExcessHet=3.0103;FS=6.154;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.36;ReadPosRankSum=1.726;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:95,23:0.19:118
chr17	57050365	rs16943326	C	T	1305.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:54,57:0.51:111
chr17	57076893	rs4598970	T	A	783.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:34,37:0.52:71
chr17	57089576	.	C	CCAGCAGCAGCAGCAG	2982	.	AC=2;AF=1.00;AN=2;BRF=0.54;FR=1.0000;HP=1;HapScore=1;MGOF=35;MMLQ=26;MQ=58.37;NF=70;NR=98;PP=2982;QD=20;SC=ATCACTACCACCAGCAGCAGC;SbPval=0.64;Source=Platypus;TC=180;TCF=80;TCR=100;TR=168;WE=57089584;WS=57089566;set=Platypus	GT:AD:AF:DP	1/1:12,168:0.93:180
chr17	57089588	rs72443487	G	GCAGCAGCAGCAGCAGCAC,GCAGCAGCAGCAGCAC	7798.73	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=401;set=Intersection	GT:AF:DP	0/1:0.83:291
chr17	57094617	rs4932691	T	C	4229.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr17	57126842	rs62084384	G	A	315.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:11,14:0.56:25
chr17	57141768	.	T	TA	70.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.048;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.22;ReadPosRankSum=0.266;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:45,13:0.22:58
chr17	57152920	rs6416933	A	G	224.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.209;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=4.993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.37;ReadPosRankSum=1.509;SOR=2.494;set=HC	GT:AD:AF:DP	0/1:12,12:0.50:24
chr17	57272079	rs2291193	G	A	724.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:41,34:0.45:75
chr17	57278908	.	C	CT	53.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.216;ClippingRankSum=0.000;DP=556;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.10;ReadPosRankSum=0.016;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:462,74:0.14:536
chr17	57287454	rs6503905	A	G	2591.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:142,129:0.48:271
chr17	57290383	rs3744383	G	A	4306.77	.	AC=1;AF=0.500;AN=2;DB;DP=467;set=Intersection	GT:AD:AF:DP	0/1:252,205:0.45:457
chr17	57311748	rs6503908	C	A	145.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.172;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=2.350;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.67;ReadPosRankSum=-1.006;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:10,9:0.47:19
chr17	57334668	rs12450435	C	G	2553.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:139,116:0.45:255
chr17	57466917	rs2290266	A	G	2063.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:85,93:0.52:178
chr17	57474667	rs58549129	C	T	1407.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:74,60:0.45:134
chr17	57643027	rs371335960	A	C	4797.77	.	AC=1;AF=0.500;AN=2;DB;DP=534;set=Intersection	GT:AD:AF:DP	0/1:281,244:0.46:525
chr17	57663596	rs58298344	TA	T	966.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.154;ClippingRankSum=0.000;DB;DP=333;ExcessHet=3.0103;FS=0.549;MLEAC=1;MLEAF=0.500;MQ=58.73;MQRankSum=-3.907;QD=3.82;ReadPosRankSum=0.432;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:141,112:0.44:253
chr17	57685253	rs145658581	GAT	G	91.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.164;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.80;ReadPosRankSum=0.742;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:43,8:0.16:51
chr17	57717737	rs9910530	C	G	4052.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.07;QD=25.49;SOR=0.757;set=HC	GT:AD:AF:DP	1/1:0,159:1.00:159
chr17	57717763	.	CT	C	97.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.438;ClippingRankSum=0.000;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.888;QD=1.03;ReadPosRankSum=-0.606;SOR=0.742;set=HC	GT:AD:AF:DP	0/1:69,26:0.27:95
chr17	57719360	rs10547125	GT	G	477.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.081;ClippingRankSum=0.000;DB;DP=281;ExcessHet=3.0103;FS=13.201;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.90;ReadPosRankSum=1.078;SOR=1.198;set=HC	GT:AD:AF:DP	0/1:173,79:0.31:252
chr17	57719365	.	T	TG	269.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.166;ClippingRankSum=0.000;DP=301;ExcessHet=3.0103;FS=4.099;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.99;ReadPosRankSum=0.149;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:210,62:0.23:272
chr17	57719366	rs9899439	T	G	794.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.253;ClippingRankSum=0.000;DB;DP=308;ExcessHet=3.0103;FS=3.339;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.80;ReadPosRankSum=0.393;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:178,106:0.37:284
chr17	57719367	.	T	G	237.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.891;ClippingRankSum=0.000;DP=310;ExcessHet=3.0103;FS=11.639;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.83;ReadPosRankSum=0.502;SOR=1.016;set=HC	GT:AD:AF:DP	0/1:220,66:0.23:286
chr17	57721907	rs113812535	T	TTTTG	2693.79	.	AC=2;AF=1.00;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.67;SOR=2.419;set=HC	GT:AD:AF:DP	1/1:9,71:0.89:80
chr17	57725043	rs8071749	T	G	6768.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr17	57733479	rs4349212	T	A	4712.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr17	57743651	rs17580385	T	C	4532.77	.	AC=1;AF=0.500;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	0/1:190,205:0.52:395
chr17	57743691	rs9893154	G	A	8435.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr17	57750982	rs8065248	T	C	2849.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr17	57851349	rs201733120	TA	T	173.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.237;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=2.884;MLEAC=1;MLEAF=0.500;MQ=60.40;MQRankSum=0.825;QD=7.55;ReadPosRankSum=-1.737;SOR=0.120;set=HC	GT:AD:AF:DP	0/1:6,17:0.74:23
chr17	57889192	rs2063353	T	G	8177.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:4,295:0.99:299
chr17	57937792	.	G	GA	454.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.710;ClippingRankSum=0.000;DP=303;ExcessHet=3.0103;FS=4.280;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.06;ReadPosRankSum=-1.865;SOR=0.584;set=HC	GT:AD:AF:DP	0/1:160,61:0.28:221
chr17	57940977	rs377342839	CA	C	50.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.189;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=1.216;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.68;ReadPosRankSum=1.125;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:56,19:0.25:75
chr17	57968488	.	TA	T	682.73	.	AC=1;AF=0.500;AN=2;DP=73;set=Intersection	GT:AD:AF:DP	0/1:33,35:0.51:68
chr17	58040730	rs4968401	T	C	1951.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr17	58066607	rs200816848	AT	A	738.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.626;ClippingRankSum=0.000;DB;DP=318;ExcessHet=3.0103;FS=1.757;MLEAC=1;MLEAF=0.500;MQ=59.46;MQRankSum=-2.950;QD=2.40;ReadPosRankSum=1.977;SOR=0.863;set=HC	GT:AD:AF:DP	0/1:200,108:0.35:308
chr17	58149745	rs3744375	G	A	10097.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	1/1:0,374:1.00:374
chr17	58180062	rs8075626	T	C	16481.77	.	AC=2;AF=1.00;AN=2;DB;DP=565;set=Intersection	GT:AD:AF:DP	1/1:2,390:0.99:392
chr17	58180079	rs8074512	C	G	16800.73	.	AC=2;AF=1.00;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	1/1:0,376:1.00:376
chr17	58180172	rs8075789	T	C	2831.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr17	58303313	rs11309727	CA	C	343.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.483;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=0.870;QD=8.59;ReadPosRankSum=-0.266;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:10,30:0.75:40
chr17	58332409	rs11324851	CT	C	350.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.490;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=1.884;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.33;ReadPosRankSum=0.887;SOR=0.279;set=HC	GT:AD:AF:DP	0/1:45,36:0.44:81
chr17	58525216	.	G	GA	43.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.118;ClippingRankSum=0.000;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.62;ReadPosRankSum=-0.189;SOR=0.536;set=HC	GT:AD:AF:DP	0/1:58,13:0.18:71
chr17	58740950	rs191317670	A	G	933.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:44,44:0.50:88
chr17	58786625	rs2643103	A	G	12406.77	.	AC=2;AF=1.00;AN=2;DB;DP=482;set=Intersection	GT:AD:AF:DP	1/1:0,467:1.00:467
chr17	58824567	rs7501675	T	C	9211.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	1/1:2,356:0.99:358
chr17	58885299	rs9904053	G	A	450.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:56,27:0.33:83
chr17	58946192	rs8066880	C	G	312.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:7,13:0.65:20
chr17	58969056	rs9303430	T	C	1761.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:129,91:0.41:220
chr17	58969174	rs9303431	C	G	1897.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:126,96:0.43:222
chr17	59001879	.	CTTT	C	333.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.901;ClippingRankSum=0.000;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.000;QD=3.24;ReadPosRankSum=-0.390;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:79,24:0.23:103
chr17	59480289	rs200207014	GAT	G	3357.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.666;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=7.493;MLEAC=1;MLEAF=0.500;MQ=59.59;MQRankSum=2.476;QD=31.09;ReadPosRankSum=0.113;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:27,81:0.75:108
chr17	59480291	.	T	TAGAG	550.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-4.048;ClippingRankSum=0.000;DP=109;ExcessHet=3.0103;FS=3.443;MLEAC=1;MLEAF=0.500;MQ=59.59;MQRankSum=-2.935;QD=5.35;ReadPosRankSum=0.303;SOR=1.393;set=HC	GT:AD:AF:DP	0/1:82,21:0.20:103
chr17	59480313	rs140392356	GAGAGAGAGAGAGAGAGAGA	G	1722.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.426;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=1.323;QD=12.22;ReadPosRankSum=1.427;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:76,65:0.46:141
chr17	59482165	rs66504335	GC	G	3377.73	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:82,89:0.52:171
chr17	59482169	rs35619711	C	G	3494.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.800;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=1.175;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.86;ReadPosRankSum=1.689;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:88,88:0.50:176
chr17	59482173	rs9891115	G	A	3460.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.132;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=1.145;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.81;ReadPosRankSum=1.454;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:92,92:0.50:184
chr17	59485393	rs2240736	C	T	7704.77	.	AC=1;AF=0.500;AN=2;DB;DP=713;set=Intersection	GT:AD:AF:DP	0/1:341,363:0.52:704
chr17	59485555	rs1057987	C	T	10348.77	.	AC=1;AF=0.500;AN=2;DB;DP=1035;set=Intersection	GT:AD:AF:DP	0/1:525,493:0.48:1018
chr17	59489893	rs9907379	T	C	6845.77	.	AC=1;AF=0.500;AN=2;DB;DP=689;set=Intersection	GT:AD:AF:DP	0/1:368,315:0.46:683
chr17	59533868	rs3744448	G	C	1258.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:73,62:0.46:135
chr17	59534987	rs3744447	T	G	6136.77	.	AC=1;AF=0.500;AN=2;DB;DP=621;set=Intersection	GT:AD:AF:DP	0/1:310,293:0.49:603
chr17	59543090	rs35279830	T	C	1037.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:44,41:0.48:85
chr17	59544775	rs1009961	C	T	1797.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:62,77:0.55:139
chr17	59544810	rs3744442	G	A	2414.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:138,113:0.45:251
chr17	59544863	rs758596	G	A	4981.77	.	AC=1;AF=0.500;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	0/1:216,236:0.52:452
chr17	59557755	rs112008276	GCC	G	926.73	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:11,28:0.72:39
chr17	59560974	rs149977669	A	AGTGTGTGT	245.79	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.11;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr17	59760996	rs4986763	A	G	5401.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr17	59763114	rs4988357	A	T	400.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:18,16:0.47:34
chr17	59763347	rs4986764	A	G	8420.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chr17	59763465	rs4986765	T	C	14338.77	.	AC=2;AF=1.00;AN=2;DB;DP=545;set=Intersection	GT:AD:AF:DP	1/1:0,538:1.00:538
chr17	59857809	rs4988351	C	G	828.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:25,38:0.60:63
chr17	59955426	rs606072	T	G	13675.77	.	AC=2;AF=1.00;AN=2;DB;DP=493;set=Intersection	GT:AD:AF:DP	1/1:1,481:1.00:482
chr17	59971067	rs8077835	A	T	848.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.320;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=5.014;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.93;ReadPosRankSum=-0.432;SOR=0.278;set=HC	GT:AD:AF:DP	0/1:56,39:0.41:95
chr17	59974794	.	C	CT	283.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.463;ClippingRankSum=0.000;DP=148;ExcessHet=3.0103;FS=6.192;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=2.852;QD=1.93;ReadPosRankSum=-0.681;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:113,34:0.23:147
chr17	59982085	rs72843757	G	A	406.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:18,17:0.49:35
chr17	60043884	rs671347	G	A	18513.77	.	AC=2;AF=1.00;AN=2;DB;DP=695;set=Intersection	GT:AD:AF:DP	1/1:1,692:1.00:693
chr17	60070111	rs11375626	G	GT	1198.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr17	60070140	rs11375627	C	CT	320.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr17	60142710	.	G	GC	427.73	.	AC=2;AF=1.00;AN=2;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr17	60215748	rs11079465	T	C	425.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr17	60217236	rs56068498	A	G	2506.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr17	60360238	rs10163525	A	G	23935.77	.	AC=2;AF=1.00;AN=2;DB;DP=584;set=Intersection	GT:AD:AF:DP	1/1:2,582:1.00:584
chr17	60360261	rs62069132	T	C	12223.77	.	AC=2;AF=1.00;AN=2;DB;DP=484;set=Intersection	GT:AD:AF:DP	1/1:4,480:0.99:484
chr17	60363906	rs202158824	G	T	1467.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.15;QD=33.36;SOR=6.184;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr17	60363941	rs148555715	G	C	2535.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.60;QD=33.81;SOR=8.662;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr17	60365992	rs149569922	C	G	3445.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.08;QD=35.16;SOR=5.507;set=HC	GT:AD:AF:DP	1/1:0,98:1.00:98
chr17	60366741	rs2668983	C	G	6651.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.80;QD=25.29;SOR=0.813;set=HC	GT:AD:AF:DP	1/1:0,263:1.00:263
chr17	60369283	rs143698032	C	T	7572.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.44;QD=26.95;SOR=0.805;set=HC	GT:AD:AF:DP	1/1:0,281:1.00:281
chr17	60374173	rs202112984	CT	C	969.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.330;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.07;MQRankSum=-1.795;QD=9.15;ReadPosRankSum=0.683;SOR=0.822;set=HC	GT:AD:AF:DP	0/1:23,83:0.78:106
chr17	60455506	rs55937716	T	C	1062.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:26,41:0.61:67
chr17	60464688	rs9909704	C	T	4140.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr17	60472623	rs11079476	C	T	5863.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr17	60491298	rs9913294	G	T	636.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:19,27:0.59:46
chr17	60503892	rs2543409	A	G	6576.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr17	60503921	rs2319055	T	C	3499.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.33;QD=33.33;SOR=3.507;set=HC	GT:AD:AF:DP	1/1:0,105:1.00:105
chr17	60597986	rs2430926	C	T	291.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:14,14:0.50:28
chr17	60598037	.	TA	T	128.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.519;ClippingRankSum=0.000;DP=48;ExcessHet=3.0103;FS=3.873;MLEAC=1;MLEAF=0.500;MQ=59.69;MQRankSum=-0.257;QD=3.48;ReadPosRankSum=0.548;SOR=0.214;set=HC	GT:AD:AF:DP	0/1:20,17:0.46:37
chr17	60637258	rs146385050	C	A	222.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:22,11:0.33:33
chr17	60651884	rs11314763	GT	G	206.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.337;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.31;ReadPosRankSum=2.281;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:27,21:0.44:48
chr17	60654358	.	G	C	331	.	AC=1;AF=0.500;AN=2;BRF=0.2;FR=0.5000;HP=2;HapScore=2;MGOF=86;MMLQ=28;MQ=57.74;NF=2;NR=25;PP=331;QD=13.5470819462;SC=GAGTCTCACTGTGTCTCCCAG;SbPval=0.78;Source=Platypus;TC=66;TCF=7;TCR=59;TR=27;WE=60654366;WS=60654348;set=Platypus	GT:AD:AF:DP	1/0:39,27:0.41:66
chr17	60657334	rs12451705	C	T	1583.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:81,74:0.48:155
chr17	60683503	rs8078132	A	G	1691.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:105,87:0.45:192
chr17	60743806	rs73333680	G	A	2620.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:132,126:0.49:258
chr17	60749533	rs8072984	A	G	1740.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:87,76:0.47:163
chr17	60751272	rs9896444	C	T	598.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:42,27:0.39:69
chr17	60753904	rs4968617	A	C	12737.77	.	AC=2;AF=1.00;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	1/1:0,462:1.00:462
chr17	60758273	rs2245463	G	C	16452.77	.	AC=2;AF=1.00;AN=2;DB;DP=619;set=Intersection	GT:AD:AF:DP	1/1:0,616:1.00:616
chr17	60759340	rs2429389	A	G	15047.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.39;SOR=0.811;set=HC	GT:AD:AF:DP	1/1:0,339:1.00:339
chr17	60759347	rs2460300	A	G	15181.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.65;SOR=0.844;set=HC	GT:AD:AF:DP	1/1:0,340:1.00:340
chr17	60766224	rs2465430	A	G	3151.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr17	60766483	rs2465429	A	G	1235.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr17	60767015	rs2429387	G	A	14211.77	.	AC=2;AF=1.00;AN=2;DB;DP=531;set=Intersection	GT:AD:AF:DP	1/1:0,528:1.00:528
chr17	60767135	rs56288724	A	G	6008.77	.	AC=1;AF=0.500;AN=2;DB;DP=651;set=Intersection	GT:AD:AF:DP	0/1:346,301:0.47:647
chr17	60767151	rs740698	C	T	7839.77	.	AC=1;AF=0.500;AN=2;DB;DP=681;set=Intersection	GT:AD:AF:DP	0/1:314,362:0.54:676
chr17	60767461	rs2465426	C	G	4568.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr17	60767953	rs11357719	GC	G	12298.73	.	AC=2;AF=1.00;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	1/1:2,410:1.00:412
chr17	60768243	rs2465425	A	G	7843.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr17	60769406	rs35688424	T	C	2471.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:84,113:0.57:197
chr17	60769803	rs3826537	A	G	2268.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:105,107:0.50:212
chr17	60778932	rs2251393	G	A	2221.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr17	60779025	rs2251391	A	G	5319.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr17	60802483	rs17683483	C	A	964.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:22,40:0.65:62
chr17	60813245	rs17683602	T	C	1886.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:61,76:0.55:137
chr17	60813627	rs2041283	G	A	6149.77	.	AC=1;AF=0.500;AN=2;DB;DP=552;set=Intersection	GT:AD:AF:DP	0/1:248,289:0.54:537
chr17	60814273	rs9891498	A	G	5415.77	.	AC=1;AF=0.500;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	0/1:168,227:0.57:395
chr17	61087073	rs16946713	A	G	1051.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:38,47:0.55:85
chr17	61315272	rs2460111	G	A	11670.77	.	AC=2;AF=1.00;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	1/1:1,431:1.00:432
chr17	61432774	rs4968765	A	G	2486.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr17	61457217	rs8065950	G	C	5407.77	.	AC=1;AF=0.500;AN=2;DB;DP=540;set=Intersection	GT:AD:AF:DP	0/1:272,257:0.49:529
chr17	61473325	rs2270133	C	A	1587.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.074;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=1.163;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.72;ReadPosRankSum=-0.502;SOR=0.821;set=HC	GT:AD:AF:DP	0/1:98,84:0.46:182
chr17	61489968	rs34592714	CT	C	267.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.540;ClippingRankSum=0.000;DB;DP=388;ExcessHet=3.0103;FS=7.090;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=2.765;QD=0.73;ReadPosRankSum=-0.509;SOR=0.372;set=HC	GT:AD:AF:DP	0/1:290,76:0.21:366
chr17	61548918	rs4277405	C	T	5664.77	.	AC=1;AF=0.500;AN=2;DB;DP=604;set=Intersection	GT:AD:AF:DP	0/1:317,278:0.47:595
chr17	61548948	rs4459609	C	A	6701.77	.	AC=1;AF=0.500;AN=2;DB;DP=671;set=Intersection	GT:AD:AF:DP	0/1:337,325:0.49:662
chr17	61556298	rs4295	C	G	2841.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:117,131:0.53:248
chr17	61556527	rs4296	A	G	4678.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr17	61559923	rs4309	C	T	5241.77	.	AC=1;AF=0.500;AN=2;DB;DP=510;set=Intersection	GT:AD:AF:DP	0/1:255,248:0.49:503
chr17	61560763	rs4311	T	C	4255.77	.	AC=1;AF=0.500;AN=2;DB;DP=485;set=Intersection	GT:AD:AF:DP	0/1:268,211:0.44:479
chr17	61562309	rs4316	C	T	5240.77	.	AC=1;AF=0.500;AN=2;DB;DP=599;set=Intersection	GT:AD:AF:DP	0/1:328,260:0.44:588
chr17	61562553	rs4320	G	A	1606.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:109,71:0.39:180
chr17	61562774	rs4321	T	C	6441.77	.	AC=1;AF=0.500;AN=2;DB;DP=695;set=Intersection	GT:AD:AF:DP	0/1:341,313:0.48:654
chr17	61564052	rs4331	A	G	6032.77	.	AC=1;AF=0.500;AN=2;DB;DP=643;set=Intersection	GT:AD:AF:DP	0/1:333,302:0.48:635
chr17	61564281	rs4332	T	C	3265.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:106,139:0.57:245
chr17	61564522	rs4333	T	C	1120.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:42,43:0.51:85
chr17	61565990	rs4341	G	C	6551.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.605;ClippingRankSum=0.000;DB;DP=405;ExcessHet=3.0103;FS=2.162;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.80;ReadPosRankSum=0.125;SOR=0.819;set=HC	GT:AD:AF:DP	0/1:217,173:0.44:390
chr17	61565998	rs4342	A	C	6786.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.047;ClippingRankSum=0.000;DB;DP=427;ExcessHet=3.0103;FS=3.223;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.51;ReadPosRankSum=-0.080;SOR=0.880;set=HC	GT:AD:AF:DP	0/1:226,185:0.45:411
chr17	61566031	rs4343	G	A	4077.77	.	AC=1;AF=0.500;AN=2;DB;DP=508;set=Intersection	GT:AD:AF:DP	0/1:284,211:0.43:495
chr17	61573761	rs4362	T	C	5548.77	.	AC=1;AF=0.500;AN=2;DB;DP=588;set=Intersection	GT:AD:AF:DP	0/1:310,273:0.47:583
chr17	61574492	rs4363	G	A	1908.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:75,93:0.55:168
chr17	61600717	rs71376915	A	G	2593.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.480;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=1.490;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.01;ReadPosRankSum=0.186;SOR=0.522;set=HC	GT:AD:AF:DP	0/1:77,67:0.47:144
chr17	61600725	.	G	A	2797.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.767;ClippingRankSum=0.000;DP=180;ExcessHet=3.0103;FS=0.608;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.99;ReadPosRankSum=0.592;SOR=0.596;set=HC	GT:AD:AF:DP	0/1:97,78:0.45:175
chr17	61607708	rs7221517	T	C	3825.77	.	AC=1;AF=0.500;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	0/1:239,191:0.44:430
chr17	61611299	rs140857709	G	A	4423.77	.	AC=1;AF=0.500;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	0/1:152,194:0.56:346
chr17	61611423	rs7225568	T	C	5845.77	.	AC=1;AF=0.500;AN=2;DB;DP=549;set=Intersection	GT:AD:AF:DP	0/1:277,263:0.49:540
chr17	61615371	rs4465659	T	G	3292.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:150,142:0.49:292
chr17	61615660	rs148485289	T	TG	2019.73	.	AC=1;AF=0.500;AN=2;DB;DP=231;MQ=60.05;set=Intersection	GT:AD:AF:DP	0/1:102,92:0.47:194
chr17	61621805	rs8070334	T	G	1984.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:133,94:0.41:227
chr17	61622703	rs12603614	A	G	1467.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:45,61:0.58:106
chr17	61623351	rs141118688	G	A	899.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:42,42:0.50:84
chr17	61627907	rs139146412	C	T	1654.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:60,62:0.51:122
chr17	61660889	rs66502552	CG	C	11737.73	.	AC=2;AF=1.00;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	1/1:0,376:1.00:376
chr17	61805527	rs71377705	C	T	2200.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:56,98:0.64:154
chr17	61888693	rs2584629	T	A	502.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:12,20:0.62:32
chr17	61908055	rs55833669	CT	C	72.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.219;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=8.315;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.47;ReadPosRankSum=1.534;SOR=0.213;set=HC	GT:AD:AF:DP	0/1:124,31:0.20:155
chr17	61986027	rs2854152	A	G	3600.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr17	61987269	.	CT	C	5564.73	.	AC=1;AF=0.500;AN=2;DP=583;MQ=59.99;set=Intersection	GT:AD:AF:DP	0/1:301,264:0.47:565
chr17	61987570	rs2727307	G	T	20441.77	.	AC=2;AF=1.00;AN=2;DB;DP=463;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.90;QD=44.25;SOR=0.871;set=HC	GT:AD:AF:DP	1/1:0,462:1.00:462
chr17	61987576	rs2246207	G	A	20322.77	.	AC=2;AF=1.00;AN=2;DB;DP=457;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.90;QD=44.67;SOR=0.809;set=HC	GT:AD:AF:DP	1/1:0,455:1.00:455
chr17	61988014	rs2006208	G	A	15281.77	.	AC=2;AF=1.00;AN=2;DB;DP=542;set=Intersection	GT:AD:AF:DP	1/1:0,533:1.00:533
chr17	61995030	rs2665802	A	T	6785.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr17	61996199	rs695	T	A	5272.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.136;ClippingRankSum=0.000;DB;DP=466;ExcessHet=3.0103;FS=1.102;MLEAC=1;MLEAF=0.500;MQ=59.53;MQRankSum=-1.116;QD=11.36;ReadPosRankSum=0.748;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:213,251:0.54:464
chr17	61996204	rs6171	T	C	17312.77	.	AC=2;AF=1.00;AN=2;DB;DP=479;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.52;QD=36.22;SOR=0.884;set=HC	GT:AD:AF:DP	1/1:0,478:1.00:478
chr17	61996255	rs2005172	A	C	15268.77	.	AC=2;AF=1.00;AN=2;DB;DP=576;set=Intersection	GT:AD:AF:DP	1/1:4,570:0.99:574
chr17	61996273	rs11568828	T	C	4858.77	.	AC=1;AF=0.500;AN=2;DB;DP=528;set=Intersection	GT:AD:AF:DP	0/1:288,238:0.45:526
chr17	61996366	rs2727338	A	G	1555.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:61,67:0.52:128
chr17	62006497	rs1051684	A	G	2092.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr17	62007498	rs2070776	A	G	17920.77	.	AC=2;AF=1.00;AN=2;DB;DP=665;set=Intersection	GT:AD:AF:DP	1/1:0,649:1.00:649
chr17	62018773	rs2070720	T	C	19644.77	.	AC=2;AF=1.00;AN=2;DB;DP=759;set=Intersection	GT:AD:AF:DP	1/1:1,747:1.00:748
chr17	62020348	rs2058194	T	C	18990.77	.	AC=2;AF=1.00;AN=2;DB;DP=715;set=Intersection	GT:AD:AF:DP	1/1:2,704:1.00:706
chr17	62020563	.	CAGAGATGACAGAGAG	C,CAG	5429.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=246;set=Intersection	GT:AF:DP	1/2:0.21,0.77:140
chr17	62021374	rs11869827	C	T	1349.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr17	62022659	rs58028318	A	AG	4378.73	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr17	62025238	rs13341114	G	T	3283.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:1,114:0.99:115
chr17	62041068	rs6504191	T	C	5279.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr17	62041208	rs75168694	G	A	3560.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:135,165:0.55:300
chr17	62041317	rs2331408	G	T	1610.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr17	62042078	rs2877373	T	C	923.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	62045293	rs11418006	C	CA	271.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.982;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=3.456;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.43;ReadPosRankSum=-0.405;SOR=0.350;set=HC	GT:AD:AF:DP	0/1:78,34:0.30:112
chr17	62045451	rs80338952	G	A	6376.77	.	AC=1;AF=0.500;AN=2;DB;DP=676;set=Intersection	GT:AD:AF:DP	0/1:357,312:0.47:669
chr17	62048467	rs2302236	A	G	5485.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr17	62048707	rs2302237	C	T	1249.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.51;SOR=1.702;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr17	62049235	rs9892013	A	G	4326.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr17	62075994	rs76735942	G	GA	2465.73	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:77,75:0.49:152
chr17	62076077	rs62070903	C	G	1927.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:99,99:0.50:198
chr17	62079286	rs12939821	G	A	4411.77	.	AC=1;AF=0.500;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	0/1:238,217:0.48:455
chr17	62079334	rs11079520	A	G	3780.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:136,173:0.56:309
chr17	62080969	rs4141180	A	C	10053.77	.	AC=2;AF=1.00;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	1/1:1,362:1.00:363
chr17	62083929	rs6504194	A	G	10339.77	.	AC=2;AF=1.00;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	1/1:0,396:1.00:396
chr17	62121480	rs196912	T	C	3445.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr17	62122145	rs196915	A	G	1975.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr17	62122677	rs196917	G	A	4750.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr17	62123022	rs196918	C	T	1190.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr17	62125272	rs196923	A	G	7343.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:2,286:0.99:288
chr17	62130389	rs10689374	G	GCCT	2302.73	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr17	62130937	rs196929	T	C	909.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr17	62132309	rs196931	C	T	1390.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr17	62141455	rs187826	A	G	7908.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr17	62145672	rs196939	A	G	3457.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr17	62145728	rs196940	A	G	1910.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr17	62152611	rs3044067	T	TAA	1640.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.799;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=1.198;MLEAC=1;MLEAF=0.500;MQ=60.67;MQRankSum=1.284;QD=17.83;ReadPosRankSum=3.150;SOR=0.909;set=HC	GT:AD:AF:DP	0/1:12,80:0.87:92
chr17	62156933	rs196947	T	C	1824.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr17	62158012	rs196950	T	C	6725.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr17	62158278	rs196951	T	C	3865.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr17	62158300	rs196952	C	T	2924.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr17	62158319	rs196953	T	C	1894.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr17	62232073	rs4968693	A	T	2367.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:95,103:0.52:198
chr17	62254983	rs1967130	G	A	708.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr17	62265838	rs36104018	TC	T	3138.73	.	AC=1;AF=0.500;AN=2;DB;DP=248;MQ=60.04;set=Intersection	GT:AD:AF:DP	0/1:127,110:0.46:237
chr17	62270785	rs2166290	T	C	2553.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:57,105:0.65:162
chr17	62385609	rs113369705	A	AAAACAAAC	2352.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.818;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.37;MQRankSum=2.611;QD=19.44;ReadPosRankSum=-1.203;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:58,63:0.52:121
chr17	62385923	rs186795213	G	A	4263.77	.	AC=1;AF=0.500;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	0/1:237,203:0.46:440
chr17	62386078	rs28670385	T	C	1697.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:79,70:0.47:149
chr17	62401118	rs2812	T	C	2092.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:84,94:0.53:178
chr17	62406971	rs2070783	A	G	1716.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:81,84:0.51:165
chr17	62463825	rs199721035	T	TG	2864.73	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr17	62464412	.	C	CT	166.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.066;ClippingRankSum=0.000;DP=261;ExcessHet=3.0103;FS=0.665;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=2.872;QD=0.75;ReadPosRankSum=-0.154;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:182,39:0.18:221
chr17	62528251	rs71831837	G	GT	287.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.406;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=4.830;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.46;ReadPosRankSum=-0.248;SOR=0.315;set=HC	GT:AD:AF:DP	0/1:84,33:0.28:117
chr17	62754586	rs9908143	T	C	5449.77	.	AC=1;AF=0.500;AN=2;DB;DP=586;set=Intersection	GT:AD:AF:DP	0/1:307,262:0.46:569
chr17	62758984	rs11374577	G	GC	2343.73	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr17	62760703	rs7208832	T	A	89.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.606;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.90;ReadPosRankSum=0.370;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:16,7:0.30:23
chr17	62782689	rs6504255	T	C	4788.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr17	62788424	.	A	G	224.77	.	AC=1;AF=0.500;AN=2;DP=80;set=Intersection	GT:AD:AF:DP	0/1:63,17:0.21:80
chr17	62796759	.	A	C	2942.77	.	AC=1;AF=0.500;AN=2;DP=398;set=Intersection	GT:AD:AF:DP	0/1:253,144:0.36:397
chr17	62801318	.	T	C	486.77	.	AC=1;AF=0.500;AN=2;DP=54;set=Intersection	GT:AD:AF:DP	0/1:28,25:0.47:53
chr17	62924044	rs6504263	G	A	2847.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr17	62952689	rs3960389	C	G	7260.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr17	63052344	rs12945514	G	T	1406.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr17	63052361	rs7216195	C	G	1451.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr17	63052714	.	T	TGCC	5289.73	.	AC=1;AF=0.500;AN=2;DP=762;set=Intersection	GT:AD:AF:DP	0/1:269,262:0.49:531
chr17	63133804	rs2585858	A	G	3948.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:1,146:0.99:147
chr17	63532767	rs28684769	C	G	3250.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:2,118:0.98:120
chr17	63532914	rs28760438	A	G	1883.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr17	63533768	rs1133683	G	A	9243.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr17	63533789	rs9915936	T	C	9099.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr17	63534250	rs8078753	T	C	2452.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr17	63534538	rs4541111	C	A	2305.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr17	63554591	rs2240308	G	A	5249.77	.	AC=1;AF=0.500;AN=2;DB;DP=572;set=Intersection	GT:AD:AF:DP	0/1:303,258:0.46:561
chr17	63633073	rs2107654	T	C	1732.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr17	63685174	rs11079582	C	T	3690.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr17	63739352	rs12948946	A	G	3567.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:1,136:0.99:137
chr17	64023624	rs17704679	T	C	1687.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr17	64023781	rs11079629	C	T	169.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr17	64024255	rs56239919	A	T	691.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=66.43;QD=43.24;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr17	64024255	.	AA	TA	647	.	AC=1;AF=0.500;AN=2;BRF=0.08;FR=1.0000,1.0000;HP=2;HapScore=2;MGOF=41;MMLQ=28;MQ=67.04;NF=14,14;NR=1,1;PP=647,373;QD=47.3897173647;SC=CTACATCTCAAAGCATCAATC;SbPval=0.64;Source=Platypus;TC=15;TCF=14;TCR=1;TR=15,15;WE=64024263;WS=64024254;set=Platypus	GT:AD:AF:DP	0/1:2,15:0.88:17
chr17	64024255	.	AA	ATA	647	.	AC=1;AF=0.500;AN=2;BRF=0.08;FR=1.0000,1.0000;HP=2;HapScore=2;MGOF=41;MMLQ=28;MQ=67.04;NF=14,14;NR=1,1;PP=647,373;QD=47.3897173647;SC=CTACATCTCAAAGCATCAATC;SbPval=0.64;Source=Platypus;TC=15;TCF=14;TCR=1;TR=15,15;WE=64024263;WS=64024254;set=Platypus	GT:AD:AF:DP	0/1:0,15:1.00:15
chr17	64024303	rs4277386	G	A	1267.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr17	64024340	rs9901053	T	C	2865.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr17	64024375	rs9899985	G	A	4134.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr17	64025056	rs11656768	T	C	69.28	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr17	64025068	rs11651749	C	A	150.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr17	64025093	rs11651820	G	A	248.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr17	64025331	rs11652766	A	G	2541.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr17	64025926	rs9908964	G	T	1638.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr17	64049733	rs1401049	A	G	5813.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr17	64050062	rs1401048	G	A	951.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	64062830	rs908713	T	A	4075.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr17	64066163	rs56728223	T	C	633.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:32,31:0.49:63
chr17	64173170	rs2159557	A	G	6652.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.006;ClippingRankSum=0.000;DB;DP=258;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=27.04;ReadPosRankSum=-0.234;SOR=1.523;set=HC	GT:AD:AF:DP	1/1:2,244:0.99:246
chr17	64225535	rs140204769	C	T	5209.77	.	AC=1;AF=0.500;AN=2;DB;DP=583;set=Intersection	GT:AD:AF:DP	0/1:308,265:0.46:573
chr17	64550701	rs35476409	AGGTG	A	4291.73	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:112,112:0.50:224
chr17	64735035	rs5821506	C	CT	8302.73	.	AC=2;AF=1.00;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	1/1:3,329:0.99:332
chr17	64735143	rs4324167	G	A	1070.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:41,43:0.51:84
chr17	64737717	rs3803821	T	A	3639.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:159,170:0.52:329
chr17	64738635	rs61761552	G	A	1282.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:59,61:0.51:120
chr17	64783081	rs6504459	G	A	4141.77	.	AC=1;AF=0.500;AN=2;DB;DP=466;set=Intersection	GT:AD:AF:DP	0/1:243,207:0.46:450
chr17	64785191	rs11420909	T	TG	3359.73	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr17	64875035	rs2286676	C	T	1090.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:67,50:0.43:117
chr17	64881075	rs2286678	A	G	7472.77	.	AC=1;AF=0.500;AN=2;DB;DP=778;set=Intersection	GT:AD:AF:DP	0/1:403,360:0.47:763
chr17	64961273	.	GCC	G	1782	.	AC=1;AF=0.500;AN=2;BRF=0.45;FR=0.5000;HP=6;HapScore=2;MGOF=27;MMLQ=24;MQ=61.89;NF=2;NR=66;PP=1782;QD=26.6617647059;SC=ACCCCTCGCCGCCCCACACAC;SbPval=0.52;Source=Platypus;TC=115;TCF=3;TCR=112;TR=68;WE=64961285;WS=64961263;set=Platypus	GT:AD:AF:DP	1/0:47,68:0.59:115
chr17	65051104	rs11322532	CA	C	2046.73	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:72,72:0.50:144
chr17	65051180	rs2363844	A	G	3192.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:160,161:0.50:321
chr17	65104743	rs11653020	G	A	9244.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	1/1:0,346:1.00:346
chr17	65116491	rs12709454	T	C	2408.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:100,119:0.54:219
chr17	65119931	.	CTG	C	510.73	.	AC=1;AF=0.500;AN=2;DP=84;set=Intersection	GT:AD:AF:DP	0/1:48,26:0.35:74
chr17	65146246	rs72053584	CT	C	78.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.06;ReadPosRankSum=0.140;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:5,8:0.62:13
chr17	65528801	rs2304278	C	T	514.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:24,24:0.50:48
chr17	65548540	rs2916133	G	T	7146.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:2,265:0.99:267
chr17	65549847	rs2570046	A	G	886.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr17	65574283	rs2570035	A	G	15227.77	.	AC=2;AF=1.00;AN=2;DB;DP=571;set=Intersection	GT:AD:AF:DP	1/1:0,562:1.00:562
chr17	65665608	rs36013607	AT	A	442.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr17	65689053	rs147971105	G	GT	3403.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.105;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.60;MQRankSum=0.377;QD=22.54;ReadPosRankSum=0.236;SOR=0.980;set=HC	GT:AD:AF:DP	1/1:2,149:0.99:151
chr17	65714359	rs3760226	G	A	3937.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr17	65718798	rs5821454	TA	T	212.73	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:4,17:0.81:21
chr17	65718839	rs999043	C	T	654.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr17	65720346	rs11654692	A	G	2068.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr17	65722849	rs3744268	G	A	1729.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr17	65730404	rs4790943	G	A	4666.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr17	65732959	rs7223990	A	G	668.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr17	65733119	rs3752647	T	C	1737.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr17	65734514	rs1542610	A	G	7560.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr17	65735563	rs2286916	G	A	1681.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr17	65736725	rs11439892	C	CA	659.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.108;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=9.294;MLEAC=1;MLEAF=0.500;MQ=60.48;MQRankSum=0.000;QD=16.92;ReadPosRankSum=0.232;SOR=5.549;set=HC	GT:AD:AF:DP	1/1:4,35:0.90:39
chr17	65737016	rs34886243	CT	C	1035.73	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:5,57:0.92:62
chr17	65739627	rs10127	A	G	1172.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr17	65739789	rs2286917	A	G	7566.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.24;SOR=0.751;set=HC	GT:AD:AF:DP	1/1:0,175:1.00:175
chr17	65739797	rs2286918	A	T	7517.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.46;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:0,173:1.00:173
chr17	65821481	rs12945266	C	T	4100.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr17	65850029	rs74842951	G	A	3733.77	.	AC=1;AF=0.500;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	0/1:190,174:0.48:364
chr17	65882457	rs8072824	T	A	2901.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr17	65900131	.	CTTTGTATTT	CATTT,C	823.73	.	AC=1,0;AF=0.500,0.00;ALERT;AN=2;DP=61;set=Intersection	GT:AF:DP	0/1:0.40:58
chr17	65900137	.	ATTTT	A	826.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=5.076;ClippingRankSum=0.000;DP=58;ExcessHet=3.0103;FS=10.194;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.76;ReadPosRankSum=1.100;SOR=2.509;set=HC	GT:AD:AF:DP	0/1:33,23:0.41:56
chr17	65900143	.	T	A	844.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.901;ClippingRankSum=0.000;DP=55;ExcessHet=3.0103;FS=8.023;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.94;ReadPosRankSum=0.836;SOR=2.223;set=HC	GT:AD:AF:DP	0/1:30,23:0.43:53
chr17	65900144	.	T	A	847.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.104;ClippingRankSum=0.000;DP=55;ExcessHet=3.0103;FS=8.023;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.00;ReadPosRankSum=0.845;SOR=2.223;set=HC	GT:AD:AF:DP	0/1:30,23:0.43:53
chr17	65919172	.	CT	C	42.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.458;ClippingRankSum=0.000;DP=87;ExcessHet=3.0103;FS=14.695;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.81;ReadPosRankSum=1.986;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:38,15:0.28:53
chr17	65955651	rs8068790	T	C	6145.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr17	65959705	.	AAG	A	2695.73	.	AC=1;AF=0.500;AN=2;DP=144;set=Intersection	GT:AD:AF:DP	0/1:67,72:0.52:139
chr17	65962538	rs5821446	A	AT	2982.73	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr17	65972188	rs61489754	TA	T	1126.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.808;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.43;MQRankSum=0.382;QD=18.78;ReadPosRankSum=-2.472;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:2,58:0.97:60
chr17	65977682	rs7502707	T	G	1431.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:89,73:0.45:162
chr17	65988049	rs9891146	T	C	7134.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr17	65989048	rs28368756	T	C	11965.77	.	AC=2;AF=1.00;AN=2;DB;DP=449;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.89;SOR=0.842;set=HC	GT:AD:AF:DP	1/1:0,445:1.00:445
chr17	66036943	rs141699894	T	TG	2328.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.909;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=9.795;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.31;ReadPosRankSum=-0.773;SOR=3.640;set=HC	GT:AD:AF:DP	1/1:4,88:0.96:92
chr17	66038181	rs62084696	C	G	9832.77	.	AC=2;AF=1.00;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	1/1:0,364:1.00:364
chr17	66039350	rs4638	A	G	10466.77	.	AC=2;AF=1.00;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	1/1:0,373:1.00:373
chr17	66039618	rs35594666	G	A	1692.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr17	66122027	rs374673808	TA	T	653.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.093;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=0.999;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.68;ReadPosRankSum=-1.760;SOR=0.960;set=HC	GT:AD:AF:DP	0/1:45,70:0.61:115
chr17	66246416	rs3213690	A	G	2268.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:104,97:0.48:201
chr17	66250522	rs35309522	C	A	212.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:23,12:0.34:35
chr17	66343470	.	G	C	1480.77	.	AC=1;AF=0.500;AN=2;DP=157;set=Intersection	GT:AD:AF:DP	0/1:85,67:0.44:152
chr17	66364691	rs1558876	C	G	1933.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:2,58:0.97:60
chr17	66364749	rs1558877	T	C	5820.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:2,206:0.99:208
chr17	66364804	rs1558878	T	C	12043.77	.	AC=2;AF=1.00;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	1/1:3,451:0.99:454
chr17	66416357	rs62000424	C	T	1402.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:80,62:0.44:142
chr17	66420766	rs3785605	T	C	2916.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr17	66422158	rs12946747	A	G	500.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:21,24:0.53:45
chr17	66422383	.	T	TG	68.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.591;ClippingRankSum=0.000;DP=42;ExcessHet=3.0103;FS=1.816;MLEAC=1;MLEAF=0.500;MQ=60.51;MQRankSum=3.262;QD=1.91;ReadPosRankSum=-1.322;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:30,6:0.17:36
chr17	66422388	rs3744304	A	G	77.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.331;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=1.816;MLEAC=1;MLEAF=0.500;MQ=60.58;MQRankSum=3.262;QD=2.16;ReadPosRankSum=-1.916;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:30,6:0.17:36
chr17	66422390	rs1006226	C	G	77.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.048;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=7.890;MLEAC=1;MLEAF=0.500;MQ=60.72;MQRankSum=5.389;QD=2.68;ReadPosRankSum=0.776;SOR=2.238;set=HC	GT:AD:AF:DP	0/1:27,2:0.07:29
chr17	66424923	rs1002446	C	T	824.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:31,40:0.56:71
chr17	66425140	rs79927765	A	G	484.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:29,24:0.45:53
chr17	66425995	rs3785610	T	G	3069.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.51;SOR=1.911;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr17	66425995	.	TCC	GCT	2510	.	AC=2;AF=1.00;AN=2;BRF=0.46;FR=1.0000;HP=2;HapScore=1;MGOF=2;MMLQ=28;MQ=59.68;NF=37;NR=10;PP=2510;QD=20;SC=CTCCCAAGGTTCCGGGATTAC;SbPval=0.49;Source=Platypus;TC=49;TCF=39;TCR=10;TR=47;WE=66426005;WS=66425985;set=Platypus	GT:AD:AF:DP	1/1:2,47:0.96:49
chr17	66425997	rs3785611	C	T	3069.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.85;SOR=1.931;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr17	66440514	rs1030098	T	C	3299.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr17	66446803	rs2302782	T	C	4151.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:2,154:0.99:156
chr17	66447073	rs2302783	T	C	1883.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:1,70:0.99:71
chr17	66449122	rs883541	G	A	6495.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr17	66453305	rs71378928	C	G	2788.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr17	66453320	rs67556103	A	C	3117.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr17	66453410	rs71378929	C	T	7021.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:1,275:1.00:276
chr17	66453572	rs146213184	GGCCCGGGAA	G	7228.73	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr17	66523772	rs3785905	G	A	151.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:7,7:0.50:14
chr17	66524987	rs2302230	G	A	9163.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:1,351:1.00:352
chr17	66526027	rs2302231	G	T	6622.73	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:5,264:0.98:269
chr17	66533655	rs2907373	A	G	11864.77	.	AC=2;AF=1.00;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	1/1:0,447:1.00:447
chr17	66533979	rs2286556	C	G	690.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:30,31:0.51:61
chr17	66536219	rs2286558	G	C	1712.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr17	66536749	rs2015212	C	T	3844.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.334;ClippingRankSum=0.000;DB;DP=386;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.20;ReadPosRankSum=2.083;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:187,190:0.50:377
chr17	66538239	rs2302234	G	T	5689.77	.	AC=1;AF=0.500;AN=2;DB;DP=536;set=Intersection	GT:AD:AF:DP	0/1:255,276:0.52:531
chr17	66538418	rs2302235	G	A	1734.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:45,67:0.60:112
chr17	66539721	rs74000753	G	A	1321.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:80,64:0.44:144
chr17	66539847	rs2286562	C	T	2478.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:158,124:0.44:282
chr17	66547829	.	A	AATT	339.25	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.064;ClippingRankSum=0.000;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=30.84;ReadPosRankSum=-0.796;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:1,10:0.91:11
chr17	66872802	rs1481	G	C	5016.77	.	AC=1;AF=0.500;AN=2;DB;DP=484;set=Intersection	GT:AD:AF:DP	0/1:232,247:0.52:479
chr17	66880081	rs8080098	A	G	392.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:10,18:0.64:28
chr17	66880371	rs1470293	G	A	60.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:10,4:0.29:14
chr17	66880405	rs3744492	T	C	222.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:19,11:0.37:30
chr17	66883719	rs6501839	A	G	1732.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:68,73:0.52:141
chr17	66890118	rs4147999	A	G	166.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:11,9:0.45:20
chr17	66899064	rs140171796	T	G	745.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:40,34:0.46:74
chr17	66899710	rs3744494	C	G	873.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:29,34:0.54:63
chr17	66899725	rs3744495	C	G	919.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.659;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.40;ReadPosRankSum=0.529;SOR=0.478;set=HC	GT:AD:AF:DP	0/1:24,26:0.52:50
chr17	66899733	rs3744496	C	T	853.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.574;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.33;ReadPosRankSum=0.584;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:20,22:0.52:42
chr17	66904031	rs200486985	G	GA	64.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.095;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=1.234;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.819;QD=1.01;ReadPosRankSum=1.660;SOR=0.994;set=HC	GT:AD:AF:DP	0/1:51,13:0.20:64
chr17	66925116	rs4147980	G	A	875.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:44,38:0.46:82
chr17	66925910	rs4147977	T	C	2160.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:48,61:0.56:109
chr17	66925923	rs4147976	C	T	1884.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:41,47:0.53:88
chr17	66933003	rs4147967	C	T	718.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:41,33:0.45:74
chr17	66938232	rs4147958	A	G	886.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:40,40:0.50:80
chr17	66938260	rs4147957	A	G	615.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:23,27:0.54:50
chr17	66972250	rs2191212	A	T	3042.77	.	AC=1;AF=0.500;AN=2;DB;DP=348;MQ=60.06;set=Intersection	GT:AD:AF:DP	0/1:192,155:0.45:347
chr17	66980111	rs146582716	C	T	2956.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:107,129:0.55:236
chr17	66985397	.	T	TCTCTCACA	276	.	AC=1;AF=0.500;AN=2;BRF=0.35;FR=0.5000;HP=2;HapScore=3;MGOF=38;MMLQ=28;MQ=60.25;NF=0;NR=8;PP=276;QD=34.875;SC=TCTCTCTCTCTCACACACACA;SbPval=1.0;Source=Platypus;TC=22;TCF=2;TCR=20;TR=8;WE=66985405;WS=66985373;set=Platypus	GT:AD:AF:DP	0/1:14,8:0.36:22
chr17	66985992	rs2302294	T	G	2402.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:151,113:0.43:264
chr17	66986162	rs9902444	A	C	6992.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr17	66987202	rs2302293	A	T	670.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:24,26:0.52:50
chr17	67003868	rs71375717	G	A	569.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:28,26:0.48:54
chr17	67023755	rs6501947	A	G	1031.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:53,44:0.45:97
chr17	67024585	rs12940103	T	C	2012.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:101,88:0.47:189
chr17	67024799	rs8066758	T	A	1910.73	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:140,112:0.44:252
chr17	67028212	rs72844573	G	C	1963.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:108,90:0.45:198
chr17	67028260	rs2302291	T	C	4178.77	.	AC=1;AF=0.500;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	0/1:181,198:0.52:379
chr17	67031369	rs1860448	T	C	6112.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr17	67031457	rs1860447	C	T	9511.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:0,356:1.00:356
chr17	67047047	rs35873471	AT	A	506.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:21,22:0.51:43
chr17	67075072	rs2302290	G	A	456.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr17	67075294	rs2302289	C	T	6588.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr17	67080770	rs11657954	A	G	4203.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr17	67080811	rs71144653	CT	C	719.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:4,46:0.92:50
chr17	67081130	rs62082718	T	A	1213.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:56,53:0.49:109
chr17	67081718	rs151121644	C	T	717.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:59,39:0.40:98
chr17	67081732	rs2302133	C	T	4013.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:1,119:0.99:120
chr17	67081830	rs2302134	T	C	7492.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr17	67099129	rs2364315	A	G	1187.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr17	67101718	rs7212506	C	T	749.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr17	67109662	rs11659091	G	A	1363.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr17	67109673	rs7504026	A	G	791.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:19,30:0.61:49
chr17	67109894	rs9282552	C	T	3085.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr17	67119593	rs4603621	G	C	1646.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr17	67125840	rs4968839	C	T	3672.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr17	67132022	rs7219200	T	C	3840.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr17	67145290	rs1014235	C	T	1306.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:69,63:0.48:132
chr17	67149633	rs138751693	T	A	3411.77	.	AC=1;AF=0.500;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	0/1:149,160:0.52:309
chr17	67150176	rs2886232	T	C	7549.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr17	67150561	rs56142812	CT	C	798.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=2.236;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=0.892;QD=14.52;ReadPosRankSum=1.282;SOR=1.569;set=HC	GT:AD:AF:DP	1/1:5,50:0.91:55
chr17	67152893	rs10605889	CAAAT	C	1143.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr17	67160148	rs36025698	T	C	1076.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:53,52:0.50:105
chr17	67160186	rs7208382	T	C	3364.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr17	67170736	rs740520	A	G	2653.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr17	67171748	rs12940557	A	G	1362.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr17	67178316	rs4968849	A	G	1654.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr17	67178954	rs4968851	C	T	1408.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.37;QD=24.72;SOR=0.728;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr17	67178976	rs60708995	GA	G	694.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.640;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.40;MQRankSum=0.530;QD=15.10;ReadPosRankSum=-0.972;SOR=0.452;set=HC	GT:AD:AF:DP	1/1:3,43:0.93:46
chr17	67181540	rs11658738	C	A	2838.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.36;SOR=2.531;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr17	67181548	rs11655199	T	G	2980.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.20;SOR=2.406;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr17	67186446	rs17776227	T	G	557.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:24,28:0.54:52
chr17	67188576	rs8070232	A	G	1045.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr17	67188668	rs8074259	T	C	4092.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr17	67193150	.	A	AGGGAGG	567.75	.	AC=1;AF=0.500;AN=2;DP=22;set=Intersection	GT:AD:AF:DP	0/1:1,17:0.94:18
chr17	67210992	rs11657804	T	C	781.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:30,37:0.55:67
chr17	67211058	rs9909045	T	A	722.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr17	67212031	rs11077414	A	G	13826.77	.	AC=2;AF=1.00;AN=2;DB;DP=528;set=Intersection	GT:AD:AF:DP	1/1:2,521:1.00:523
chr17	67212423	rs9909216	G	A	2531.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr17	67212574	rs9912127	A	C	1478.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr17	67212595	rs11868981	G	A	406.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:24,21:0.47:45
chr17	67215712	rs12941264	C	T	2300.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr17	67219703	rs11655507	G	A	4431.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr17	67220060	rs1468513	T	G	791.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr17	67245941	rs1420904	G	A	754.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr17	67249599	rs75169077	C	T	559.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:25,23:0.48:48
chr17	67251995	rs78837144	A	G	946.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:28,42:0.60:70
chr17	67257689	rs111243629	ACAT	A	136.73	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:12,5:0.29:17
chr17	67260926	rs12449649	A	G	859.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:49,44:0.47:93
chr17	67273882	rs536009	C	A	4501.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr17	67274054	rs12452340	C	A	116.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:15,6:0.29:21
chr17	67279959	rs56193366	C	CAGTA	488.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr17	67280225	rs113812582	A	C	1049.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:47,50:0.52:97
chr17	67280310	rs564426	A	C	499.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr17	67282332	rs1550828	T	C	2433.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:137,121:0.47:258
chr17	67285261	rs7223000	C	T	843.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:56,42:0.43:98
chr17	67287327	rs34164530	G	GT	910.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.767;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.85;ReadPosRankSum=-0.863;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:73,60:0.45:133
chr17	67287534	rs76276838	T	C	1217.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:63,54:0.46:117
chr17	67293535	rs487382	A	G	1424.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr17	67297176	rs12938097	T	C	387.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:23,18:0.44:41
chr17	67516340	rs370731454	GT	G	652.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.083;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=10.660;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=1.561;QD=5.35;ReadPosRankSum=-1.195;SOR=1.725;set=HC	GT:AD:AF:DP	0/1:69,53:0.43:122
chr17	67532388	rs3815035	A	G	3837.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr17	68127335	rs36047658	C	CA	81.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.588;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=7.501;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=1.251;QD=3.89;ReadPosRankSum=0.784;SOR=2.517;set=HC	GT:AD:AF:DP	0/1:12,9:0.43:21
chr17	69334502	rs199921000	CT	C	101.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.742;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=4.810;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.97;ReadPosRankSum=1.527;SOR=1.347;set=HC	GT:AD:AF:DP	0/1:80,25:0.24:105
chr17	69334553	rs4401085	G	C	6299.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr17	69334971	.	TATTTC	T	1093.73	.	AC=2;AF=1.00;AN=2;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.94;QD=35.28;SOR=1.214;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr17	69334981	.	CTTTCTTTCTTCCTTCCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT	C	978.73	.	AC=1;AF=0.500;AN=2;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.40;MQRankSum=-1.199;QD=31.57;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:4,27:0.87:31
chr17	70119245	rs12950966	C	G	4940.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr17	70120551	rs1042667	A	C	11333.77	.	AC=2;AF=1.00;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	1/1:0,427:1.00:427
chr17	70845688	rs12449747	C	A	585.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:27,27:0.50:54
chr17	70845949	.	CAAA	C,CA	4947.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.883;ClippingRankSum=0.000;DP=239;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.27;MQRankSum=0.391;QD=22.80;ReadPosRankSum=0.054;SOR=1.078;set=HC	GT:AD:AF:DP	1/2:25,49,143:0.23,0.66:217
chr17	70846027	rs4998297	G	A	1063.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:68,48:0.41:116
chr17	70846116	rs4436821	C	T	225.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:30,14:0.32:44
chr17	70943990	rs2466517	T	C	6368.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr17	71027543	rs9912666	G	A	348.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr17	71081078	rs9891809	G	A	3314.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:144,158:0.52:302
chr17	71166701	rs7220818	A	G	13565.77	.	AC=2;AF=1.00;AN=2;DB;DP=511;set=Intersection	GT:AD:AF:DP	1/1:3,502:0.99:505
chr17	71189155	.	A	AGG	937	.	AC=1;AF=0.500;AN=2;BRF=0.51;FR=0.5000;HP=7;HapScore=2;MGOF=14;MMLQ=24;MQ=60.03;NF=15;NR=9;PP=937;QD=40.125;SC=AAGATGGCGGAGGGGGCGGGA;SbPval=0.61;Source=Platypus;TC=54;TCF=33;TCR=21;TR=24;WE=71189163;WS=71189145;set=Platypus	GT:AD:AF:DP	0/1:30,24:0.44:54
chr17	71189182	rs3764359	A	G	1453.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:66,66:0.50:132
chr17	71192468	rs1052705	C	T	432.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:22,21:0.49:43
chr17	71192663	rs1052706	G	A	2957.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:166,139:0.46:305
chr17	71192873	rs11544800	A	G	2891.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:123,137:0.53:260
chr17	71192955	rs1010442	C	T	1610.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:38,64:0.63:102
chr17	71193594	rs7221701	G	A	1858.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:123,92:0.43:215
chr17	71193633	rs11658510	G	A	1966.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:51,82:0.62:133
chr17	71195949	rs1009110	C	T	1087.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:42,45:0.52:87
chr17	71196809	rs1026128	A	G	2222.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:134,109:0.45:243
chr17	71196995	rs1026129	G	A	423.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:26,19:0.42:45
chr17	71197200	rs1026130	T	C	1148.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr17	71197748	rs1037256	G	A	4820.77	.	AC=1;AF=0.500;AN=2;DB;DP=537;set=Intersection	GT:AD:AF:DP	0/1:303,229:0.43:532
chr17	71201675	rs3829571	T	C	9982.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:0,382:1.00:382
chr17	71202777	rs200268966	CT	C	225.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.862;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=1.080;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=2.016;QD=3.01;ReadPosRankSum=0.871;SOR=0.906;set=HC	GT:AD:AF:DP	0/1:43,32:0.43:75
chr17	71203231	rs57965299	CAAAAA	C	1229.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.849;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=1.983;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=0.914;QD=20.16;ReadPosRankSum=1.641;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:17,44:0.72:61
chr17	71205854	rs8387	A	G	3170.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:168,147:0.47:315
chr17	71206030	rs11655892	T	C	860.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:42,37:0.47:79
chr17	71208647	rs10717516	GC	G	2107.73	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:66,68:0.51:134
chr17	71208960	rs11655656	T	C	1327.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:66,53:0.45:119
chr17	71223424	rs71154980	GA	G	260.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.386;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=1.564;QD=4.83;ReadPosRankSum=-0.373;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:29,25:0.46:54
chr17	71223501	rs17184168	T	C	163.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:14,9:0.39:23
chr17	71231604	rs3751925	A	C	3368.77	.	AC=1;AF=0.500;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	0/1:212,157:0.43:369
chr17	71232687	rs745143	T	C	3274.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:165,145:0.47:310
chr17	71232804	rs904384	C	A	19680.77	.	AC=2;AF=1.00;AN=2;DB;DP=531;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.20;SOR=0.960;set=HC	GT:AD:AF:DP	1/1:0,529:1.00:529
chr17	71232804	.	CATT	AATC,AATT	2820	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.44;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=8;MMLQ=24;MQ=59.97;NF=118,210;NR=75,149;PP=2820,2702;QD=20;SC=CCAGAATCATCATTGTGTCCC;SbPval=0.64;Source=Platypus;TC=367;TCF=215;TCR=152;TR=193,359;WE=71232815;WS=71232794;set=Platypus	GT:AF:DP	0/1:0.53:367
chr17	71232807	rs904383	T	C	6527.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.299;ClippingRankSum=0.000;DB;DP=529;ExcessHet=3.0103;FS=0.528;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.39;ReadPosRankSum=-1.171;SOR=0.786;set=HC	GT:AD:AF:DP	0/1:232,295:0.56:527
chr17	71232881	rs745142	G	C	7925.77	.	AC=1;AF=0.500;AN=2;DB;DP=679;set=Intersection	GT:AD:AF:DP	0/1:298,366:0.55:664
chr17	71233130	rs11869253	A	G	5426.77	.	AC=1;AF=0.500;AN=2;DB;DP=603;set=Intersection	GT:AD:AF:DP	0/1:320,273:0.46:593
chr17	71238433	rs1566286	G	A	5096.77	.	AC=1;AF=0.500;AN=2;DB;DP=547;set=Intersection	GT:AD:AF:DP	0/1:291,252:0.46:543
chr17	71238525	rs1566287	A	G	3597.77	.	AC=1;AF=0.500;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	0/1:203,174:0.46:377
chr17	71238649	rs5821951	T	TC	1231.73	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:39,38:0.49:77
chr17	71238693	rs1566288	T	C	445.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:13,17:0.57:30
chr17	71239000	rs2270726	T	C	370.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:7,10:0.59:17
chr17	71239016	rs2270727	C	T	442.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:8,13:0.62:21
chr17	71239087	rs1566290	G	T	539.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:42,29:0.41:71
chr17	71239190	rs2270728	A	T	1882.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.834;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=2.179;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=0.888;QD=25.44;ReadPosRankSum=2.113;SOR=0.440;set=HC	GT:AD:AF:DP	0/1:20,54:0.73:74
chr17	71239214	rs138600770	GAA	G	1772.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.525;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.76;MQRankSum=1.097;QD=31.66;ReadPosRankSum=1.269;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:12,44:0.79:56
chr17	71239227	.	T	TG	1006.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.047;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.98;MQRankSum=1.023;QD=23.41;ReadPosRankSum=-0.578;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:8,35:0.81:43
chr17	71239234	.	T	TTTTG	1081.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.443;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;FS=1.799;MLEAC=1;MLEAF=0.500;MQ=61.05;MQRankSum=1.252;QD=27.04;ReadPosRankSum=0.542;SOR=0.362;set=HC	GT:AD:AF:DP	0/1:6,34:0.85:40
chr17	71244630	rs8915	C	T	8071.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:1,299:1.00:300
chr17	71334473	rs3195414	G	A	5875.77	.	AC=1;AF=0.500;AN=2;DB;DP=683;set=Intersection	GT:AD:AF:DP	0/1:367,304:0.45:671
chr17	71344584	rs4969105	G	A	6342.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr17	71344801	rs371061421	G	A	2419.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:133,114:0.46:247
chr17	71344889	rs9905883	C	T	2337.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr17	71346329	.	T	TGGGCACTGCTGGGCCTGGCCCCCCACCC	2975	.	AC=2;AF=1.00;AN=2;BRF=0.47;FR=1.0000;HP=3;HapScore=1;MGOF=15;MMLQ=23;MQ=63.79;NF=21;NR=2;PP=2975;QD=20;SC=TCTCCCCACCTGGGCACTGCT;SbPval=0.6;Source=Platypus;TC=46;TCF=42;TCR=4;TR=23;WE=71346337;WS=71346319;set=Platypus	GT:AD:AF:DP	1/1:23,23:0.50:46
chr17	71346347	.	G	GC	2995.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.306;ClippingRankSum=0.000;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=64.97;MQRankSum=1.065;QD=48.32;ReadPosRankSum=1.370;SOR=3.545;set=HC	GT:AD:AF:DP	1/1:1,61:0.98:62
chr17	71346353	.	A	C	2471	.	AC=2;AF=1.00;AN=2;BRF=0.5;FR=1.0000;HP=5;HapScore=1;MGOF=38;MMLQ=28;MQ=63.47;NF=87;NR=24;PP=2471;QD=22.5745154284;SC=CCTGGCCCCCAACCCACGCAG;SbPval=0.5;Source=Platypus;TC=112;TCF=88;TCR=24;TR=111;WE=71346361;WS=71346343;set=Platypus	GT:AD:AF:DP	1/1:1,111:0.99:112
chr17	71346353	.	A	ACCCGGGCACTGCTGGGCCTGGCCCCCC	5605.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.794;ClippingRankSum=0.000;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=65.85;MQRankSum=1.278;QD=72.80;ReadPosRankSum=0.765;SOR=2.531;set=HC	GT:AD:AF:DP	1/1:1,76:0.99:77
chr17	71346750	rs1995163	C	G	6450.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr17	71346943	rs4969107	A	G	3051.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:1,106:0.99:107
chr17	71347027	rs12449590	G	A	514.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:12,19:0.61:31
chr17	71353985	rs2279730	T	C	3943.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr17	71357718	rs35151121	ACT	A	2951.73	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:59,77:0.57:136
chr17	71357810	rs2279732	G	A	4565.77	.	AC=1;AF=0.500;AN=2;DB;DP=482;set=Intersection	GT:AD:AF:DP	0/1:249,226:0.48:475
chr17	71358045	rs11657033	T	C	1652.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:83,84:0.50:167
chr17	71365150	rs56761775	C	CA	178.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.317;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=4.620;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.521;QD=2.29;ReadPosRankSum=1.169;SOR=0.247;set=HC	GT:AD:AF:DP	0/1:53,25:0.32:78
chr17	71365314	rs867998	A	G	1439.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:87,72:0.45:159
chr17	71375794	rs62072075	C	T	1804.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:91,81:0.47:172
chr17	71376869	rs12941386	C	T	1548.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:73,64:0.47:137
chr17	71382166	rs2270720	G	A	577.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:15,26:0.63:41
chr17	71382747	rs7212508	T	C	3313.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr17	71390366	rs904381	C	A	4689.77	.	AC=1;AF=0.500;AN=2;DB;DP=467;set=Intersection	GT:AD:AF:DP	0/1:240,225:0.48:465
chr17	71394066	rs7224026	C	G	319.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:10,13:0.57:23
chr17	71397366	rs11653524	G	A	2909.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:111,139:0.56:250
chr17	71397375	rs7226251	T	G	1955.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:136,99:0.42:235
chr17	71415245	rs8071352	G	A	4757.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr17	71418605	rs9894213	T	C	8758.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr17	71420035	rs6501636	T	C	4370.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr17	71426656	rs1105353	G	T	1314.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.078;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=2.098;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.01;ReadPosRankSum=0.363;SOR=0.524;set=HC	GT:AD:AF:DP	0/1:77,69:0.47:146
chr17	71426670	rs1105354	G	A	1573.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:99,81:0.45:180
chr17	71429674	rs11652365	C	T	682.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:17,28:0.62:45
chr17	71429776	rs8071524	G	A	1777.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:88,81:0.48:169
chr17	71437093	rs118118340	G	A	1585.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:106,74:0.41:180
chr17	71443924	rs7209875	A	G	1807.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:79,77:0.49:156
chr17	71503636	rs9895895	T	C	6009.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:1,219:1.00:220
chr17	71640085	rs62063643	G	A	671.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:29,33:0.53:62
chr17	71746361	rs17782705	G	A	630.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr17	71746386	rs17191848	A	G	1062.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr17	71746427	rs35481671	G	A	2795.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.09;SOR=2.621;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr17	71746435	rs34026863	C	T	2893.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.84;SOR=2.602;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr17	71746479	rs2683163	C	G	3795.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr17	71746508	rs2683162	T	C	5033.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr17	71746796	rs2620035	A	G	10378.77	.	AC=2;AF=1.00;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	1/1:0,381:1.00:381
chr17	71824671	.	CT	C	116.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.720;ClippingRankSum=0.000;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.20;ReadPosRankSum=2.968;SOR=0.509;set=HC	GT:AD:AF:DP	0/1:33,20:0.38:53
chr17	72205586	rs117852236	G	A	2867.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:128,129:0.50:257
chr17	72209858	rs7206926	A	G	17758.77	.	AC=2;AF=1.00;AN=2;DB;DP=668;set=Intersection	GT:AD:AF:DP	1/1:0,662:1.00:662
chr17	72226945	rs877583	A	G	1731.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:100,86:0.46:186
chr17	72233559	rs62621376	G	A	5530.77	.	AC=1;AF=0.500;AN=2;DB;DP=507;set=Intersection	GT:AD:AF:DP	0/1:235,265:0.53:500
chr17	72240168	rs35682745	G	A	1523.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.272;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=2.046;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.23;ReadPosRankSum=-1.740;SOR=0.837;set=HC	GT:AD:AF:DP	0/1:73,76:0.51:149
chr17	72240177	rs35999669	T	G	5132.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.977;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=34.92;ReadPosRankSum=-0.884;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:2,145:0.99:147
chr17	72240336	rs73356650	G	A	497.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:31,24:0.44:55
chr17	72245613	rs1870991	A	G	5092.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr17	72245629	rs1870993	A	G	3813.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr17	72245953	rs1112216	G	A	4468.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr17	72245986	rs36208397	CCACTGTGGGGCTCCTGGGAGACGGAGCCT	C	4743.73	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:4,174:0.98:178
chr17	72246101	rs3897753	T	C	21554.77	.	AC=2;AF=1.00;AN=2;DB;DP=806;MQ=60.01;set=Intersection	GT:AD:AF:DP	1/1:6,791:0.99:797
chr17	72246382	rs139483749	TCTCG	T	16395.73	.	AC=2;AF=1.00;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	1/1:4,374:0.99:378
chr17	72246466	rs7224615	C	T	8440.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:4,313:0.99:317
chr17	72248363	rs4789639	C	T	3463.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:2,138:0.99:140
chr17	72248482	rs9892705	C	A	2780.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.935;ClippingRankSum=0.000;DB;DP=232;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.09;ReadPosRankSum=2.053;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:98,132:0.57:230
chr17	72248482	.	CA	AG	1326	.	AC=1;AF=0.500;AN=2;BRF=0.39;FR=0.5000;HP=1;HapScore=2;MGOF=24;MMLQ=22;MQ=60.0;NF=43;NR=51;PP=1326;QD=14.6751901581;SC=ATGATCTGTGCAGGGCCAAGG;SbPval=0.51;Source=Platypus;TC=169;TCF=76;TCR=93;TR=94;WE=72248491;WS=72248472;set=Platypus	GT:AD:AF:DP	1/0:75,94:0.56:169
chr17	72248483	rs4789640	A	G	8535.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.326;ClippingRankSum=0.000;DB;DP=232;ExcessHet=3.0103;FS=3.342;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=36.95;ReadPosRankSum=-0.781;SOR=0.479;set=HC	GT:AD:AF:DP	1/1:1,230:1.00:231
chr17	72248512	rs12600564	C	T	1554.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:106,76:0.42:182
chr17	72248524	rs4789641	C	T	2073.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:75,99:0.57:174
chr17	72248593	rs4789642	C	T	2054.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:1,74:0.99:75
chr17	72249229	rs9899862	C	A	5127.77	.	AC=1;AF=0.500;AN=2;DB;DP=645;set=Intersection	GT:AD:AF:DP	0/1:369,273:0.43:642
chr17	72250110	rs8069056	G	C	3414.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr17	72250149	rs8074722	T	C	1783.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr17	72256155	rs7225498	G	A	1512.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:59,62:0.51:121
chr17	72256196	rs34344898	TC	T	3508.73	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:122,125:0.51:247
chr17	72281367	rs6501706	A	G	10480.77	.	AC=2;AF=1.00;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	1/1:0,386:1.00:386
chr17	72283314	rs12452656	G	T	802.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:33,34:0.51:67
chr17	72285659	rs35159044	C	CA	284.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.95;ReadPosRankSum=0.542;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:45,27:0.38:72
chr17	72285705	rs62065706	C	T	1948.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:96,91:0.49:187
chr17	72285906	rs62065707	G	A	1777.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:85,82:0.49:167
chr17	72295966	rs34159194	C	T	15679.77	.	AC=2;AF=1.00;AN=2;DB;DP=597;set=Intersection	GT:AD:AF:DP	1/1:2,591:1.00:593
chr17	72301432	rs8073660	A	G	33260.77	.	AC=2;AF=1.00;AN=2;DB;DP=1224;set=Intersection	GT:AD:AF:DP	1/1:1,1214:1.00:1215
chr17	72303449	rs11867486	G	A	7057.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr17	72305534	rs2290955	C	T	14202.77	.	AC=2;AF=1.00;AN=2;DB;DP=541;set=Intersection	GT:AD:AF:DP	1/1:0,531:1.00:531
chr17	72305688	rs2290956	T	C	2970.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:103,137:0.57:240
chr17	72305753	rs2290957	C	T	4298.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr17	72306116	rs66769719	CCT	C	12260.73	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr17	72308319	rs1979370	G	A	4940.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr17	72308403	rs4239008	G	A	1362.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.59;SOR=5.549;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr17	72308410	rs4239009	C	T	1362.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.30;SOR=4.743;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr17	72308447	rs1979371	G	A	487.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr17	72310476	rs2054400	G	A	8136.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr17	72321928	rs7207519	T	C	357.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:21,17:0.45:38
chr17	72322881	rs8082699	G	A	6196.77	.	AC=1;AF=0.500;AN=2;DB;DP=506;set=Intersection	GT:AD:AF:DP	0/1:218,269:0.55:487
chr17	72324649	rs11412158	G	GC	3572.73	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:124,117:0.49:241
chr17	72332849	rs1111596	A	G	1355.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:66,65:0.50:131
chr17	72338164	rs11285065	TC	T	7275.73	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr17	72344723	rs75219617	TGTAA	T	9790.73	.	AC=2;AF=1.00;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	1/1:2,358:0.99:360
chr17	72346736	rs12451539	C	T	15972.77	.	AC=2;AF=1.00;AN=2;DB;DP=592;set=Intersection	GT:AD:AF:DP	1/1:0,588:1.00:588
chr17	72346855	rs11077744	T	C	15391.77	.	AC=2;AF=1.00;AN=2;DB;DP=589;set=Intersection	GT:AD:AF:DP	1/1:0,573:1.00:573
chr17	72348741	rs11655890	T	C	3201.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr17	72348810	rs1814832	A	C	4801.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr17	72349067	rs2280108	C	T	13496.77	.	AC=2;AF=1.00;AN=2;DB;DP=529;set=Intersection	GT:AD:AF:DP	1/1:0,510:1.00:510
chr17	72350277	rs2382642	T	G	3642.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr17	72350412	rs2271535	G	A	11610.77	.	AC=2;AF=1.00;AN=2;DB;DP=451;set=Intersection	GT:AD:AF:DP	1/1:0,434:1.00:434
chr17	72357585	rs6501712	A	G	1454.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr17	72357805	rs12939498	C	T	10263.77	.	AC=2;AF=1.00;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	1/1:0,362:1.00:362
chr17	72366695	rs2382647	C	A	11131.77	.	AC=2;AF=1.00;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	1/1:1,413:1.00:414
chr17	72367843	rs11652774	C	T	1598.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:99,74:0.43:173
chr17	72368550	rs11658891	T	C	7354.77	.	AC=1;AF=0.500;AN=2;DB;DP=689;set=Intersection	GT:AD:AF:DP	0/1:337,341:0.50:678
chr17	72369704	rs12451435	G	A	708.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:10,29:0.74:39
chr17	72439700	rs9893663	T	G	7861.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr17	72439808	rs3840056	TG	T	6180.73	.	AC=1;AF=0.500;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	0/1:194,200:0.51:394
chr17	72443192	rs2706527	G	T	7361.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr17	72469958	rs1127737	A	G	9657.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.108;ClippingRankSum=0.000;DB;DP=532;ExcessHet=3.0103;FS=3.213;MLEAC=1;MLEAF=0.500;MQ=58.36;MQRankSum=-9.440;QD=18.50;ReadPosRankSum=0.207;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:268,254:0.49:522
chr17	72469966	rs2272111	G	A	9743.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.189;ClippingRankSum=0.000;DB;DP=543;ExcessHet=3.0103;FS=1.741;MLEAC=1;MLEAF=0.500;MQ=58.39;MQRankSum=-9.178;QD=18.32;ReadPosRankSum=1.952;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:276,256:0.48:532
chr17	72473553	rs7209406	T	C	1096.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:53,55:0.51:108
chr17	72477385	rs1879967	A	G	3730.77	.	AC=1;AF=0.500;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	0/1:167,186:0.53:353
chr17	72478025	rs79524136	C	G	1088.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:52,51:0.50:103
chr17	72519798	rs1472726	C	T	2144.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:82,102:0.55:184
chr17	72521760	rs372366394	GTC	G	217.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.254;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=6.510;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.07;ReadPosRankSum=1.313;SOR=0.132;set=HC	GT:AD:AF:DP	0/1:56,15:0.21:71
chr17	72521897	rs17553512	G	A	5411.77	.	AC=1;AF=0.500;AN=2;DB;DP=530;set=Intersection	GT:AD:AF:DP	0/1:265,257:0.49:522
chr17	72527718	rs965229	A	G	3354.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr17	72537878	rs2293188	G	A	4066.77	.	AC=1;AF=0.500;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	0/1:191,188:0.50:379
chr17	72537894	rs2140253	A	G	2775.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:154,136:0.47:290
chr17	72538917	rs7215669	A	G	159.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:6,7:0.54:13
chr17	72541838	rs809740	A	G	7166.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:2,281:0.99:283
chr17	72541980	rs783230	A	G	8188.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chr17	72588326	rs493430	A	C	5976.77	.	AC=1;AF=0.500;AN=2;DB;DP=515;set=Intersection	GT:AD:AF:DP	0/1:249,260:0.51:509
chr17	72608834	rs579238	G	A	4945.77	.	AC=1;AF=0.500;AN=2;DB;DP=547;set=Intersection	GT:AD:AF:DP	0/1:298,245:0.45:543
chr17	72608926	rs509574	G	A	5864.77	.	AC=1;AF=0.500;AN=2;DB;DP=603;set=Intersection	GT:AD:AF:DP	0/1:299,283:0.49:582
chr17	72610089	rs1878061	C	T	2715.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:140,126:0.47:266
chr17	72613589	rs581157	T	G	2557.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:129,118:0.48:247
chr17	72615293	rs12950039	C	T	6008.77	.	AC=1;AF=0.500;AN=2;DB;DP=663;set=Intersection	GT:AD:AF:DP	0/1:348,310:0.47:658
chr17	72691928	rs2034310	T	C	5864.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr17	72699384	rs749780	C	A	811.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:1,29:0.97:30
chr17	72700943	rs35489971	A	G	24768.77	.	AC=2;AF=1.00;AN=2;DB;DP=935;set=Intersection	GT:AD:AF:DP	1/1:8,898:0.99:906
chr17	72736755	rs11651291	A	G	4514.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr17	72744798	rs745666	G	C	3280.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:119,150:0.56:269
chr17	72744911	rs117393174	G	A	5176.77	.	AC=1;AF=0.500;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	0/1:221,244:0.52:465
chr17	72762901	rs4788849	A	T	896.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.359;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=1.790;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.90;ReadPosRankSum=4.186;SOR=0.938;set=HC	GT:AD:AF:DP	0/1:74,56:0.43:130
chr17	72768001	.	C	T	803.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.991;ClippingRankSum=0.000;DP=1028;ExcessHet=3.0103;FS=0.771;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.79;ReadPosRankSum=0.972;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:872,146:0.14:1018
chr17	72768970	rs2305214	G	A	835.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:67,42:0.39:109
chr17	72769694	rs878907	A	G	2104.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:129,100:0.44:229
chr17	72771637	rs750018	C	T	1391.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:84,65:0.44:149
chr17	72773387	rs8074137	G	A	927.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:28,39:0.58:67
chr17	72773638	rs76981050	T	C	4747.77	.	AC=1;AF=0.500;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	0/1:180,228:0.56:408
chr17	72773794	rs9910691	C	A	7095.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:1,259:1.00:260
chr17	72781812	rs2166703	G	A	1250.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr17	72784932	rs2016126	G	A	21040.77	.	AC=2;AF=1.00;AN=2;DB;DP=797;set=Intersection	GT:AD:AF:DP	1/1:1,792:1.00:793
chr17	72786909	rs35287780	C	CT	296.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.954;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=11.420;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.41;ReadPosRankSum=0.918;SOR=3.611;set=HC	GT:AD:AF:DP	0/1:8,18:0.69:26
chr17	72791088	rs3830567	A	AG	3051.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.231;ClippingRankSum=0.000;DB;DP=251;ExcessHet=3.0103;FS=2.747;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.56;ReadPosRankSum=-0.119;SOR=0.517;set=HC	GT:AD:AF:DP	0/1:54,189:0.78:243
chr17	72791618	rs7221435	A	G	3590.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr17	72791667	rs112849192	G	A	2104.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:120,105:0.47:225
chr17	72838481	rs939536	C	T	2808.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr17	72839130	rs139495021	A	AGCTCCGGGG	976.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr17	72848758	rs75018418	C	CG	10942.73	.	AC=2;AF=1.00;AN=2;DB;DP=398;MQ=60.16;set=Intersection	GT:AD:AF:DP	1/1:2,332:0.99:334
chr17	72848772	rs199662980	G	GC	14265.73	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr17	72848778	rs201209302	C	CG	12449.73	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr17	72851133	rs689730	A	G	6462.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr17	72862705	rs2070918	G	A	11346.77	.	AC=2;AF=1.00;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	1/1:3,426:0.99:429
chr17	72888836	rs489152	G	A	7116.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr17	72889676	.	G	GGGCTCCGTAGGTTCCATGGGCTCCGTAGGTTCCATGGGCTCCGTAGGTTCCATC,GGGCTCCGTAGGTTCCATGGGCTCCGTAGGTTCCATGGGCTCCGTAGGTTCCATGGGCTCCGTAGGTTCCATC	19697.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=435;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.34;QD=149.23;SOR=1.758;set=HC	GT:AD:AF:DP	1/2:0,51,81:0.39,0.61:132
chr17	72927123	rs6501741	G	T	31011.77	.	AC=2;AF=1.00;AN=2;DB;DP=1182;set=Intersection	GT:AD:AF:DP	1/1:2,1174:1.00:1176
chr17	72929380	rs2035835	G	C	3791.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr17	72937605	rs7210616	G	A	9346.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:1,332:1.00:333
chr17	72937851	rs9890664	G	A	13316.77	.	AC=2;AF=1.00;AN=2;DB;DP=490;set=Intersection	GT:AD:AF:DP	1/1:1,486:1.00:487
chr17	72938100	rs1542752	T	C	10973.77	.	AC=2;AF=1.00;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	1/1:0,410:1.00:410
chr17	72939446	rs4789110	C	T	7893.77	.	AC=1;AF=0.500;AN=2;DB;DP=760;set=Intersection	GT:AD:AF:DP	0/1:374,382:0.51:756
chr17	72939663	rs8069015	G	A	1881.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:86,82:0.49:168
chr17	72939854	.	AAC	A	419.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.444;ClippingRankSum=0.000;DP=186;ExcessHet=3.0103;FS=1.932;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.65;ReadPosRankSum=-1.350;SOR=0.432;set=HC	GT:AD:AF:DP	0/1:88,27:0.23:115
chr17	72943126	rs8066909	G	A	5623.77	.	AC=1;AF=0.500;AN=2;DB;DP=496;set=Intersection	GT:AD:AF:DP	0/1:236,251:0.52:487
chr17	72948369	rs17853024	A	G	5678.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr17	72951823	rs9899490	C	T	9671.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr17	72951845	rs9903414	G	A	11633.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr17	72952017	rs9906160	A	G	4520.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr17	72956124	rs3744198	G	A	17679.77	.	AC=2;AF=1.00;AN=2;DB;DP=658;set=Intersection	GT:AD:AF:DP	1/1:0,653:1.00:653
chr17	72958573	rs117050258	T	C	995.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:30,46:0.61:76
chr17	72959000	rs7503218	G	C	2863.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:2,102:0.98:104
chr17	72983888	rs7222918	A	C	400.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr17	72995412	rs4789125	G	C	1330.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.47;QD=28.93;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr17	72998329	rs201238200	T	G	3868.77	.	AC=1;AF=0.500;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	0/1:206,185:0.47:391
chr17	73000061	rs3744203	A	G	5595.77	.	AC=1;AF=0.500;AN=2;DB;DP=540;set=Intersection	GT:AD:AF:DP	0/1:275,249:0.48:524
chr17	73016489	rs34496172	C	T	3750.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:130,172:0.57:302
chr17	73038746	rs9660	T	C	804.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:41,42:0.51:83
chr17	73043337	rs12952376	C	T	248.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.529;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=1.583;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.88;ReadPosRankSum=-0.175;SOR=0.294;set=HC	GT:AD:AF:DP	0/1:14,14:0.50:28
chr17	73058385	rs71380862	C	T	1192.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:48,53:0.52:101
chr17	73089524	rs4789133	G	A	4132.77	.	AC=1;AF=0.500;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	0/1:183,196:0.52:379
chr17	73089671	rs60903053	G	T	10036.77	.	AC=1;AF=0.500;AN=2;DB;DP=478;MQ=60.16;set=Intersection	GT:AD:AF:DP	0/1:212,264:0.55:476
chr17	73089676	rs138452930	CT	C	5170.73	.	AC=1;AF=0.500;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	0/1:213,232:0.52:445
chr17	73089706	rs4789134	G	A	4643.77	.	AC=1;AF=0.500;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	0/1:253,205:0.45:458
chr17	73089852	rs4788863	T	C	9666.77	.	AC=1;AF=0.500;AN=2;DB;DP=898;set=Intersection	GT:AD:AF:DP	0/1:445,448:0.50:893
chr17	73094164	rs61738943	C	T	3245.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:137,151:0.52:288
chr17	73096475	rs200730771	C	T	8803.77	.	AC=1;AF=0.500;AN=2;DB;DP=949;set=Intersection	GT:AD:AF:DP	0/1:512,434:0.46:946
chr17	73106432	rs74697881	C	T	3671.77	.	AC=1;AF=0.500;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	0/1:167,163:0.49:330
chr17	73110144	rs1531565	G	T	3040.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr17	73110279	rs1531564	C	T	6603.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr17	73124692	rs2291028	C	T	1588.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:50,66:0.57:116
chr17	73125173	rs2291027	A	G	840.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:34,34:0.50:68
chr17	73126746	rs10715821	GT	G	21168.73	.	AC=2;AF=1.00;AN=2;DB;DP=536;set=Intersection	GT:AD:AF:DP	1/1:0,527:1.00:527
chr17	73127024	rs9910084	C	G	7059.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr17	73127424	rs117652839	C	T	1845.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:105,89:0.46:194
chr17	73127683	rs4788867	T	C	1846.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr17	73132058	.	G	GA	39.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.426;ClippingRankSum=0.000;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=2.053;QD=0.49;ReadPosRankSum=-1.506;SOR=0.542;set=HC	GT:AD:AF:DP	0/1:67,14:0.17:81
chr17	73132424	rs147209511	C	CT	798.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.325;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=4.036;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=1.974;QD=6.89;ReadPosRankSum=1.359;SOR=0.351;set=HC	GT:AD:AF:DP	0/1:57,59:0.51:116
chr17	73138722	.	G	GAGGGA	641.73	.	AC=2;AF=1.00;AN=2;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.14;QD=49.36;SOR=5.283;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr17	73138980	rs151283915	TAC	T	621.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr17	73143574	rs1382508	T	A	855.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr17	73177444	rs1471453	C	A	1452.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr17	73178794	.	GC	G	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.015;ClippingRankSum=-0.000;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.30;ReadPosRankSum=0.732;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:6,3:0.33:9
chr17	73204530	rs899326	T	C	627.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.70;QD=34.88;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr17	73204535	.	CAAAA	C	236.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.645;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=5.651;MLEAC=1;MLEAF=0.500;MQ=59.81;MQRankSum=0.000;QD=11.27;ReadPosRankSum=-1.176;SOR=2.546;set=HC	GT:AD:AF:DP	0/1:9,12:0.57:21
chr17	73208182	rs12946479	C	T	6987.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	1/1:2,258:0.99:260
chr17	73208205	rs56406015	G	GTT,GTGTT	9945.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=272;set=Intersection	GT:AF:DP	1/2:0.26,0.74:234
chr17	73211642	rs9909306	A	G	1942.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr17	73221439	rs2291029	C	T	10725.77	.	AC=2;AF=1.00;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	1/1:0,384:1.00:384
chr17	73222847	rs1551967	C	T	14458.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:0,333:1.00:333
chr17	73222865	rs1478785	G	A	15098.77	.	AC=2;AF=1.00;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	1/1:0,362:1.00:362
chr17	73228101	rs899318	T	C	4611.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr17	73230856	rs9988	C	T	16089.77	.	AC=2;AF=1.00;AN=2;DB;DP=605;set=Intersection	GT:AD:AF:DP	1/1:0,597:1.00:597
chr17	73231817	rs3841603	AT	A	4010.73	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:2,174:0.99:176
chr17	73236605	rs11077781	C	A	1092.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:1,37:0.97:38
chr17	73240559	rs2306216	A	G	1963.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr17	73240836	rs4789156	T	C	6001.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr17	73242895	rs2242230	A	G	12791.77	.	AC=2;AF=1.00;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	1/1:1,452:1.00:453
chr17	73242935	rs2242231	A	G	7106.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr17	73257830	rs2279161	C	T	6310.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr17	73257986	rs8075276	C	T	10803.77	.	AC=2;AF=1.00;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	1/1:0,409:1.00:409
chr17	73258085	rs36039201	GGC	G	4773.73	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:7,169:0.96:176
chr17	73258479	rs6501772	C	T	18189.77	.	AC=2;AF=1.00;AN=2;DB;DP=677;set=Intersection	GT:AD:AF:DP	1/1:0,669:1.00:669
chr17	73259083	rs2279162	C	T	930.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:44,39:0.47:83
chr17	73268801	rs3744231	C	T	1655.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:75,77:0.51:152
chr17	73269530	rs1809352	A	G	4199.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr17	73269676	rs4789164	C	T	869.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:40,43:0.52:83
chr17	73279624	rs7213318	A	G	6806.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:2,261:0.99:263
chr17	73279700	rs4788882	C	T	7576.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr17	73316679	rs8079197	G	C	1548.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:67,64:0.49:131
chr17	73317644	rs12946365	C	T	944.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:17,40:0.70:57
chr17	73328773	rs1529844	T	C	5946.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr17	73389446	rs4788890	A	G	312.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:27,17:0.39:44
chr17	73402246	rs7220246	C	A	3036.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr17	73481482	rs148775478	C	T	730.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:30,36:0.55:66
chr17	73482110	rs11331365	TC	T	2699.73	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr17	73482664	rs9899149	T	C	1504.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr17	73484694	rs56323400	C	T	1337.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:36,56:0.61:92
chr17	73484753	rs11652993	C	G	6230.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:1,227:1.00:228
chr17	73485033	rs11867527	T	C	6599.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr17	73485781	rs8079362	C	T	9717.77	.	AC=1;AF=0.500;AN=2;DB;DP=1053;set=Intersection	GT:AD:AF:DP	0/1:568,481:0.46:1049
chr17	73488794	rs4078259	C	T	21099.77	.	AC=2;AF=1.00;AN=2;DB;DP=765;set=Intersection	GT:AD:AF:DP	1/1:0,756:1.00:756
chr17	73489220	rs7215753	T	C	12352.77	.	AC=2;AF=1.00;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	1/1:0,448:1.00:448
chr17	73489567	rs4078474	C	G	9076.77	.	AC=1;AF=0.500;AN=2;DB;DP=943;set=Intersection	GT:AD:AF:DP	0/1:481,454:0.49:935
chr17	73490036	rs55768663	C	T	924.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:45,43:0.49:88
chr17	73490611	rs8078131	A	G	2885.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:1,111:0.99:112
chr17	73491894	rs11077792	G	A	2827.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr17	73494963	rs9894026	G	A	3669.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr17	73497415	rs8081353	T	C	6027.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.32;SOR=2.081;set=HC	GT:AD:AF:DP	1/1:0,133:1.00:133
chr17	73497415	.	TTT	CTC	2947	.	AC=2;AF=1.00;AN=2;BRF=0.33;FR=1.0000;HP=2;HapScore=1;MGOF=17;MMLQ=28;MQ=60.0;NF=88;NR=25;PP=2947;QD=20;SC=ATCTAGGTGATTTCAACACCT;SbPval=0.6;Source=Platypus;TC=120;TCF=92;TCR=28;TR=113;WE=73497425;WS=73497405;set=Platypus	GT:AD:AF:DP	1/1:7,113:0.94:120
chr17	73497417	rs8081354	T	C	6027.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.00;SOR=1.964;set=HC	GT:AD:AF:DP	1/1:0,137:1.00:137
chr17	73497439	rs8075850	G	A	6447.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr17	73497794	rs9892311	T	C	9591.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chr17	73498483	rs7503373	T	C	4720.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr17	73499697	rs7207376	T	C	11482.77	.	AC=2;AF=1.00;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	1/1:1,424:1.00:425
chr17	73501752	rs8069700	G	A	1027.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:30,43:0.59:73
chr17	73502118	rs28558885	G	A	6918.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr17	73504416	rs6501815	T	C	11167.77	.	AC=2;AF=1.00;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	1/1:0,402:1.00:402
chr17	73510012	rs4789206	A	T	3683.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr17	73512643	.	T	TGGAGCC	768.73	.	AC=2;AF=1.00;AN=2;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr17	73513677	rs11559205	A	C	21133.77	.	AC=2;AF=1.00;AN=2;DB;DP=791;set=Intersection	GT:AD:AF:DP	1/1:0,778:1.00:778
chr17	73514944	rs62088466	A	G	2044.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:1,67:0.99:68
chr17	73515055	.	A	AT	352.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.688;ClippingRankSum=0.000;DP=267;ExcessHet=3.0103;FS=5.535;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.43;ReadPosRankSum=0.876;SOR=1.083;set=HC	GT:AD:AF:DP	0/1:192,54:0.22:246
chr17	73515237	rs55786842	A	G	5424.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr17	73518284	rs6501820	G	C	6106.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr17	73519137	rs62088468	A	C	1522.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr17	73519589	rs62088469	T	C	1669.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr17	73520359	rs62088470	C	G	5293.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr17	73539631	rs6501822	A	G	6419.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr17	73554523	rs1671033	C	G	1472.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:47,64:0.58:111
chr17	73559342	rs936060	G	A	4933.77	.	AC=1;AF=0.500;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	0/1:245,219:0.47:464
chr17	73559563	rs1671028	G	A	2149.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:114,102:0.47:216
chr17	73559629	rs1671027	A	G	976.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:56,43:0.43:99
chr17	73564962	rs34001927	A	G	4971.77	.	AC=1;AF=0.500;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	0/1:238,217:0.48:455
chr17	73565171	rs1671021	T	C	6476.77	.	AC=1;AF=0.500;AN=2;DB;DP=701;set=Intersection	GT:AD:AF:DP	0/1:383,315:0.45:698
chr17	73565262	rs2305526	T	A	12453.77	.	AC=2;AF=1.00;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	1/1:0,446:1.00:446
chr17	73565510	rs936059	T	G	848.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:42,38:0.47:80
chr17	73567846	rs1661715	C	T	2966.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:145,133:0.48:278
chr17	73568055	rs1661714	C	T	7808.77	.	AC=1;AF=0.500;AN=2;DB;DP=830;set=Intersection	GT:AD:AF:DP	0/1:420,386:0.48:806
chr17	73568984	rs1671020	G	A	1718.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:62,75:0.55:137
chr17	73569010	rs1661713	T	C	2115.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:95,91:0.49:186
chr17	73569776	rs10648915	C	CCT	1807.73	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:44,47:0.52:91
chr17	73569927	rs1671019	G	T	3279.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:155,141:0.48:296
chr17	73570718	rs1126939	C	G	3444.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:143,165:0.54:308
chr17	73570756	rs1661712	G	T	3211.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:123,144:0.54:267
chr17	73571030	rs1042861	A	G	5129.77	.	AC=1;AF=0.500;AN=2;DB;DP=466;set=Intersection	GT:AD:AF:DP	0/1:212,239:0.53:451
chr17	73587347	rs11656113	G	A	3613.77	.	AC=1;AF=0.500;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	0/1:204,171:0.46:375
chr17	73587640	rs707709	T	C	9800.77	.	AC=2;AF=1.00;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	1/1:0,373:1.00:373
chr17	73587756	rs117785251	G	T	4102.77	.	AC=1;AF=0.500;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	0/1:213,199:0.48:412
chr17	73587784	rs936056	A	G	9161.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:1,332:1.00:333
chr17	73588027	rs746840	C	T	2827.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:122,131:0.52:253
chr17	73588058	rs736522	G	T	3197.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.754;ClippingRankSum=0.000;DB;DP=317;ExcessHet=3.0103;FS=0.856;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.22;ReadPosRankSum=0.274;SOR=0.630;set=HC	GT:AD:AF:DP	0/1:155,158:0.50:313
chr17	73588067	rs736523	A	G	12074.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.51;SOR=0.766;set=HC	GT:AD:AF:DP	1/1:0,340:1.00:340
chr17	73588199	rs736525	T	C	2511.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:97,103:0.52:200
chr17	73588233	rs56298033	G	T	2066.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:98,94:0.49:192
chr17	73588542	rs736521	A	G	614.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:18,22:0.55:40
chr17	73590436	rs820254	A	G	652.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:39,34:0.47:73
chr17	73590830	rs820256	T	G	11793.77	.	AC=2;AF=1.00;AN=2;DB;DP=453;set=Intersection	GT:AD:AF:DP	1/1:2,449:1.00:451
chr17	73598904	rs62089251	C	G	525.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:15,23:0.61:38
chr17	73601517	rs11448916	T	TA	448.70	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.145;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.46;ReadPosRankSum=0.276;SOR=0.838;set=HC	GT:AD:AF:DP	0/1:6,30:0.83:36
chr17	73601755	rs936054	G	A	2065.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr17	73602081	rs8068464	G	A	2104.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:72,99:0.58:171
chr17	73606310	rs11657863	G	A	1720.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:89,81:0.48:170
chr17	73607804	rs3743991	T	C	806.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:33,38:0.54:71
chr17	73608203	rs820140	T	C	3064.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:137,136:0.50:273
chr17	73608744	rs11336364	CA	C	964.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.999;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=5.081;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=0.659;QD=10.05;ReadPosRankSum=0.577;SOR=1.629;set=HC	GT:AD:AF:DP	0/1:24,72:0.75:96
chr17	73609112	rs820142	G	A	4266.77	.	AC=1;AF=0.500;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	0/1:157,189:0.55:346
chr17	73609139	rs3803728	C	T	3564.77	.	AC=1;AF=0.500;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	0/1:214,165:0.44:379
chr17	73610203	rs4789221	C	T	1106.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:24,45:0.65:69
chr17	73611467	rs3803729	A	G	1699.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:67,71:0.51:138
chr17	73611724	rs35131709	G	GTC	9534.73	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:2,222:0.99:224
chr17	73611823	rs820144	T	C	8346.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:0,323:1.00:323
chr17	73612461	rs371699907	CAGG	C	285.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.727;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=2.225;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.000;QD=1.93;ReadPosRankSum=0.414;SOR=0.440;set=HC	GT:AD:AF:DP	0/1:130,18:0.12:148
chr17	73612642	rs11439064	A	AT	28923.73	.	AC=2;AF=1.00;AN=2;DB;DP=798;set=Intersection	GT:AD:AF:DP	1/1:0,770:1.00:770
chr17	73613975	rs820145	G	A	11665.77	.	AC=2;AF=1.00;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	1/1:0,422:1.00:422
chr17	73614357	rs1093992	G	A	10232.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	1/1:0,382:1.00:382
chr17	73615644	rs820147	C	T	2221.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr17	73615887	rs820148	A	G	17654.77	.	AC=2;AF=1.00;AN=2;DB;DP=652;set=Intersection	GT:AD:AF:DP	1/1:4,647:0.99:651
chr17	73615933	rs820149	T	C	14372.77	.	AC=2;AF=1.00;AN=2;DB;DP=517;set=Intersection	GT:AD:AF:DP	1/1:3,514:0.99:517
chr17	73615962	rs820150	T	C	17086.77	.	AC=2;AF=1.00;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	1/1:3,426:0.99:429
chr17	73615983	rs820151	G	A	16004.77	.	AC=2;AF=1.00;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	1/1:2,373:0.99:375
chr17	73616088	rs820152	T	C	10018.77	.	AC=2;AF=1.00;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	1/1:2,376:0.99:378
chr17	73616211	rs3840857	TG	T	7622.73	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:1,208:1.00:209
chr17	73616239	rs820153	C	G	5798.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:1,200:1.00:201
chr17	73616446	rs820154	A	T	7389.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:1,267:1.00:268
chr17	73616853	rs10808	G	C	19998.77	.	AC=2;AF=1.00;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	1/1:1,463:1.00:464
chr17	73616864	rs11470	C	A	20107.77	.	AC=2;AF=1.00;AN=2;DB;DP=465;set=Intersection	GT:AD:AF:DP	1/1:1,456:1.00:457
chr17	73616920	rs10814	A	G	13509.77	.	AC=2;AF=1.00;AN=2;DB;DP=500;set=Intersection	GT:AD:AF:DP	1/1:1,489:1.00:490
chr17	73617104	rs820182	A	C	16242.77	.	AC=2;AF=1.00;AN=2;DB;DP=584;set=Intersection	GT:AD:AF:DP	1/1:4,566:0.99:570
chr17	73617377	rs820183	A	G	9704.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr17	73617403	rs820184	T	C	6790.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr17	73619920	rs820186	G	A	11949.77	.	AC=2;AF=1.00;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	1/1:0,431:1.00:431
chr17	73619952	.	GCTTCT	G	11314.73	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=1.000;ClippingRankSum=0.000;DP=418;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=28.08;ReadPosRankSum=-1.105;SOR=0.942;set=HC	GT:AD:AF:DP	1/1:2,401:1.00:403
chr17	73619953	.	CT	GG	2947	.	AC=2;AF=1.00;AN=2;BRF=0.44;FR=1.0000;HP=2;HapScore=1;MGOF=17;MMLQ=24;MQ=60.0;NF=176;NR=117;PP=2947;QD=20;SC=GGACCGGTGGCTTCTGGGGGT;SbPval=0.63;Source=Platypus;TC=322;TCF=187;TCR=135;TR=293;WE=73619967;WS=73619942;set=Platypus	GT:AD:AF:DP	1/1:29,293:0.91:322
chr17	73619955	.	TCTG	T	2948	.	AC=2;AF=1.00;AN=2;BRF=0.44;FR=1.0000;HP=1;HapScore=1;MGOF=17;MMLQ=28;MQ=60.03;NF=80;NR=118;PP=2948;QD=20;SC=ACCGGTGGCTTCTGGGGGTGG;SbPval=0.48;Source=Platypus;TC=200;TCF=80;TCR=120;TR=198;WE=73619967;WS=73619942;set=Platypus	GT:AD:AF:DP	1/1:2,198:0.99:200
chr17	73619958	.	G	GGT	10778.73	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=1.458;ClippingRankSum=0.000;DP=408;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=27.22;ReadPosRankSum=-0.011;SOR=0.981;set=HC	GT:AD:AF:DP	1/1:4,392:0.99:396
chr17	73620804	rs820187	C	A	8554.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr17	73621432	rs820188	A	G	5992.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr17	73625286	rs820190	G	A	11883.77	.	AC=2;AF=1.00;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	1/1:0,476:1.00:476
chr17	73625478	rs820191	T	C	9030.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	1/1:0,340:1.00:340
chr17	73625629	rs820192	A	C	3468.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr17	73626208	rs820193	G	C	2029.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr17	73626817	rs820194	G	A	10621.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr17	73626829	rs820195	C	G	10258.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr17	73627539	rs820196	T	C	3270.77	.	AC=1;AF=0.500;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	0/1:187,160:0.46:347
chr17	73627565	rs820197	A	G	8503.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,327:1.00:327
chr17	73647138	rs1661744	CA	TG	3389.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr17	73658489	rs820159	T	C	964.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr17	73661411	rs820157	A	G	1441.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr17	73663296	rs2165635	CT	AG	1937.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr17	73663313	rs864234	C	A	1595.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr17	73663372	rs820156	A	T	3805.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr17	73687495	rs820218	G	A	10404.77	.	AC=2;AF=1.00;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	1/1:0,403:1.00:403
chr17	73698557	rs820232	C	T	1701.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr17	73702317	rs820230	A	G	3877.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:1,128:0.99:129
chr17	73702402	rs820229	T	C	9740.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chr17	73720638	rs820166	C	T	2016.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:67,86:0.56:153
chr17	73720727	rs3862481	G	A	3984.77	.	AC=1;AF=0.500;AN=2;DB;DP=448;set=Intersection	GT:AD:AF:DP	0/1:246,201:0.45:447
chr17	73720900	rs820167	A	G	5327.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr17	73723453	rs34275940	GC	G	8817.73	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr17	73725239	rs71271523	CA	C	498.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.503;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=4.943;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=1.100;QD=5.54;ReadPosRankSum=1.574;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:41,49:0.54:90
chr17	73725298	rs1661674	C	T	7660.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.637;ClippingRankSum=0.000;DB;DP=401;ExcessHet=3.0103;FS=0.780;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=0.992;QD=19.59;ReadPosRankSum=0.698;SOR=0.649;set=HC	GT:AD:AF:DP	0/1:193,198:0.51:391
chr17	73725301	rs34598265	C	T	14604.77	.	AC=2;AF=1.00;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	1/1:0,406:1.00:406
chr17	73725304	rs1661675	C	G	7792.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.081;ClippingRankSum=0.000;DB;DP=426;ExcessHet=3.0103;FS=0.532;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=1.007;QD=18.78;ReadPosRankSum=0.866;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:208,207:0.50:415
chr17	73726685	rs1093996	T	C	1451.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.26;SOR=7.658;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr17	73732025	rs820174	C	T	1550.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:92,71:0.44:163
chr17	73732045	rs820175	T	C	2321.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:110,106:0.49:216
chr17	73732522	rs820176	T	G	2113.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:85,95:0.53:180
chr17	73732810	rs820177	A	C	2113.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:90,103:0.53:193
chr17	73733315	rs820179	G	C	874.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:55,42:0.43:97
chr17	73746146	rs820387	T	C	14289.77	.	AC=2;AF=1.00;AN=2;DB;DP=532;set=Intersection	GT:AD:AF:DP	1/1:0,523:1.00:523
chr17	73746370	rs820388	T	C	1764.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:101,78:0.44:179
chr17	73750859	rs8669	C	G	14273.77	.	AC=1;AF=0.500;AN=2;DB;DP=1619;set=Intersection	GT:AD:AF:DP	0/1:881,718:0.45:1599
chr17	73751042	rs3988219	C	CACAT	14058.73	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,319:1.00:319
chr17	73751990	rs1008177	T	A	195.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:11,10:0.48:21
chr17	73752954	rs78884789	C	T	3162.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:114,142:0.55:256
chr17	73752999	rs2249613	C	G	3376.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:162,147:0.48:309
chr17	73753503	rs871443	T	C	16028.77	.	AC=2;AF=1.00;AN=2;DB;DP=604;set=Intersection	GT:AD:AF:DP	1/1:0,588:1.00:588
chr17	73753661	rs9367	C	T	9388.77	.	AC=2;AF=1.00;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	1/1:0,418:1.00:418
chr17	73759038	rs35008831	TC	T	11170.73	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:0,319:1.00:319
chr17	73759304	rs820386	G	T	4754.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:2,180:0.99:182
chr17	73759552	rs7209235	G	A	1828.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:72,80:0.53:152
chr17	73760626	rs56038529	T	C	5849.77	.	AC=1;AF=0.500;AN=2;DB;DP=569;set=Intersection	GT:AD:AF:DP	0/1:287,275:0.49:562
chr17	73760820	rs55715426	G	A	2522.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:124,120:0.49:244
chr17	73780506	rs11655389	G	A	860.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:23,40:0.63:63
chr17	73780813	rs147842313	A	G	6065.77	.	AC=1;AF=0.500;AN=2;DB;DP=695;set=Intersection	GT:AD:AF:DP	0/1:378,301:0.44:679
chr17	73781075	rs11335367	GC	G	438.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.367;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=5.035;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.28;ReadPosRankSum=-0.830;SOR=3.258;set=HC	GT:AD:AF:DP	0/1:3,21:0.88:24
chr17	73812909	rs9908146	A	G	9783.77	.	AC=2;AF=1.00;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	1/1:0,374:1.00:374
chr17	73813181	.	CAGAGCCTGTGCTGATGAGCCTGTAGGACTGG	C	2963	.	AC=1;AF=0.500;AN=2;BRF=0.21;FR=0.5000;HP=3;HapScore=1;MGOF=2;MMLQ=27;MQ=60.31;NF=1;NR=11;PP=2963;QD=20;SC=GGGCAGTCCCCAGAGCCTGTG;SbPval=0.33;Source=Platypus;TC=30;TCF=1;TCR=29;TR=12;WE=73813219;WS=73813171;set=Platypus	GT:AD:AF:DP	0/1:18,12:0.40:30
chr17	73816026	rs11868471	A	G	21562.77	.	AC=2;AF=1.00;AN=2;DB;DP=815;set=Intersection	GT:AD:AF:DP	1/1:2,807:1.00:809
chr17	73819525	rs8078208	C	T	3682.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:155,178:0.53:333
chr17	73824121	rs7210574	T	C	1648.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:97,82:0.46:179
chr17	73826406	rs2290769	G	C	323.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:16,14:0.47:30
chr17	73827205	rs1135688	T	C	4715.77	.	AC=1;AF=0.500;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	0/1:195,221:0.53:416
chr17	73828903	rs112267124	G	A	5494.77	.	AC=1;AF=0.500;AN=2;DB;DP=527;set=Intersection	GT:AD:AF:DP	0/1:240,274:0.53:514
chr17	73830996	rs17581728	C	T	1408.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:114,69:0.38:183
chr17	73832384	rs74410877	C	T	5171.77	.	AC=1;AF=0.500;AN=2;DB;DP=485;set=Intersection	GT:AD:AF:DP	0/1:225,246:0.52:471
chr17	73833087	rs142821095	C	CCCTCCTCCAGGGCCCCTGGTGGAGAA	840.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.827;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=1.149;QD=17.16;ReadPosRankSum=1.177;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:27,22:0.45:49
chr17	73836162	rs7223416	C	G	3264.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:142,138:0.49:280
chr17	73837142	rs8067076	A	C	3614.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:141,176:0.56:317
chr17	73837209	rs11868308	C	T	857.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.835;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.08;ReadPosRankSum=1.003;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:34,37:0.52:71
chr17	73838816	rs3744006	G	A	1366.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:60,58:0.49:118
chr17	73838857	rs11870883	C	T	2692.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:118,124:0.51:242
chr17	73839214	rs3744008	G	C	1979.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:97,98:0.50:195
chr17	73839366	rs3744009	C	T	2326.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:92,108:0.54:200
chr17	73839498	rs9903200	G	A	910.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:71,46:0.39:117
chr17	73840243	rs3744010	G	A	2438.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:129,118:0.48:247
chr17	73844748	rs2290771	A	G	2421.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:112,100:0.47:212
chr17	73847613	rs936393	A	G	1049.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:46,50:0.52:96
chr17	73847799	rs936391	G	A	2969.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:137,136:0.50:273
chr17	73871467	rs3744017	G	A	3425.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:108,152:0.58:260
chr17	73871911	rs3744021	G	A	845.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:45,34:0.43:79
chr17	73872948	rs1055129	A	G	1259.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:44,54:0.55:98
chr17	73872969	rs3833085	A	AG	832.73	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:32,34:0.52:66
chr17	73874012	rs3903010	T	G	1102.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:47,54:0.53:101
chr17	73874071	rs4600514	G	A	1056.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:32,49:0.60:81
chr17	73874138	rs4072479	G	C	338.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:30,19:0.39:49
chr17	73874684	rs116044941	G	C	549.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:36,29:0.45:65
chr17	73886888	rs3760128	A	G	2142.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:113,108:0.49:221
chr17	73887807	rs11270925	TGCACACACACACGTGCTCACA	T	1168.73	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:41,32:0.44:73
chr17	73888354	rs34974290	G	A	6730.77	.	AC=1;AF=0.500;AN=2;DB;DP=632;set=Intersection	GT:AD:AF:DP	0/1:319,313:0.50:632
chr17	73888423	rs7222755	A	G	10397.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.309;ClippingRankSum=0.000;DB;DP=629;ExcessHet=3.0103;FS=1.100;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.72;ReadPosRankSum=0.814;SOR=0.623;set=HC	GT:AD:AF:DP	0/1:352,270:0.43:622
chr17	73888427	rs7222757	A	C	5846.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.658;ClippingRankSum=0.000;DB;DP=636;ExcessHet=3.0103;FS=1.750;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.27;ReadPosRankSum=-0.889;SOR=0.543;set=HC	GT:AD:AF:DP	0/1:353,278:0.44:631
chr17	73888672	rs3744028	T	C	1488.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:59,60:0.50:119
chr17	73888743	rs3744027	G	A	647.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:36,28:0.44:64
chr17	73893125	rs56098159	C	T	345.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.256;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=3.254;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.86;ReadPosRankSum=-1.735;SOR=0.277;set=HC	GT:AD:AF:DP	0/1:27,17:0.39:44
chr17	73894804	rs7370	G	A	1206.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:69,56:0.45:125
chr17	73897033	rs111405920	A	AC	16975.73	.	AC=1;AF=0.500;AN=2;DB;DP=1067;MQ=60.01;set=Intersection	GT:AD:AF:DP	0/1:597,451:0.43:1048
chr17	73897046	rs9902371	A	G	8495.77	.	AC=1;AF=0.500;AN=2;DB;DP=1085;set=Intersection	GT:AD:AF:DP	0/1:619,459:0.43:1078
chr17	73900688	rs3744015	T	C	3663.77	.	AC=1;AF=0.500;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	0/1:170,174:0.51:344
chr17	73900851	rs368159910	GCCC	G	1225.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.474;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=31.604;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.000;QD=23.13;ReadPosRankSum=2.008;SOR=7.054;set=HC	GT:AD:AF:DP	0/1:13,40:0.75:53
chr17	73906934	rs9302994	G	A	1154.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:59,55:0.48:114
chr17	73908566	rs9895947	A	C	115.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:5,5:0.50:10
chr17	73909948	rs55793071	C	T	5294.77	.	AC=1;AF=0.500;AN=2;DB;DP=530;set=Intersection	GT:AD:AF:DP	0/1:259,256:0.50:515
chr17	73913729	rs4788912	C	G	488.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr17	73913965	rs11288315	TC	T	3489.73	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr17	73922941	rs2305913	T	C	1790.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:81,88:0.52:169
chr17	73926121	rs1135889	C	A	833.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:18,37:0.67:55
chr17	73931787	rs59867239	G	A	2015.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:89,96:0.52:185
chr17	73931847	rs7218498	C	G	992.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:33,42:0.56:75
chr17	73934130	rs2608882	G	A	3206.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:104,147:0.59:251
chr17	73942976	rs2666003	G	A	809.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:37,39:0.51:76
chr17	73944596	rs2666005	T	G	1595.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:60,68:0.53:128
chr17	73949540	rs1135640	G	C	1591.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:99,73:0.42:172
chr17	73951864	rs10852766	T	C	7084.77	.	AC=1;AF=0.500;AN=2;DB;DP=716;set=Intersection	GT:AD:AF:DP	0/1:355,349:0.50:704
chr17	73953404	rs11077798	T	C	678.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:25,31:0.55:56
chr17	73969835	rs3744032	C	T	4157.77	.	AC=1;AF=0.500;AN=2;DB;DP=474;MQ=60.02;set=Intersection	GT:AD:AF:DP	0/1:265,203:0.43:468
chr17	73974886	rs3744034	T	C	418.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:35,19:0.35:54
chr17	73974946	rs3744035	T	C	1362.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:74,61:0.45:135
chr17	73997474	rs2069528	G	A	7295.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr17	74006655	rs62090078	G	A	3400.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:166,162:0.49:328
chr17	74007846	rs2290251	A	G	2582.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:103,121:0.54:224
chr17	74011452	rs2071195	G	A	5558.77	.	AC=1;AF=0.500;AN=2;DB;DP=546;set=Intersection	GT:AD:AF:DP	0/1:263,262:0.50:525
chr17	74011721	rs2665970	C	A	3688.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:151,160:0.51:311
chr17	74014468	rs2071194	C	A	1453.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:55,64:0.54:119
chr17	74014628	rs2071193	G	A	3189.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:145,155:0.52:300
chr17	74014634	rs7218767	G	T	2862.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:161,146:0.48:307
chr17	74014668	rs2071192	T	C	2811.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:144,142:0.50:286
chr17	74015590	rs2244371	C	T	2328.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.195;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=2.616;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.08;ReadPosRankSum=0.437;SOR=0.431;set=HC	GT:AD:AF:DP	0/1:58,58:0.50:116
chr17	74015595	rs2244370	T	C	2445.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.351;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=5.620;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.12;ReadPosRankSum=-0.404;SOR=0.352;set=HC	GT:AD:AF:DP	0/1:67,68:0.50:135
chr17	74017554	rs74955334	G	T	319.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.713;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=0.901;MLEAC=1;MLEAF=0.500;MQ=59.21;MQRankSum=-9.085;QD=1.81;ReadPosRankSum=3.289;SOR=0.522;set=HC	GT:AD:AF:DP	0/1:157,20:0.11:177
chr17	74017573	rs78569674	C	G	187.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.775;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=3.195;MLEAC=1;MLEAF=0.500;MQ=59.38;MQRankSum=-9.290;QD=0.97;ReadPosRankSum=2.648;SOR=0.605;set=HC	GT:AD:AF:DP	0/1:175,19:0.10:194
chr17	74017594	rs193119748	A	G	61.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.451;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=3.476;MLEAC=1;MLEAF=0.500;MQ=59.43;MQRankSum=-7.792;QD=0.29;ReadPosRankSum=0.797;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:194,17:0.08:211
chr17	74017677	rs200115767	G	GCC	3363.73	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr17	74017700	rs71161251	T	TC	2839.73	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:1,94:0.99:95
chr17	74018655	rs2598417	C	T	7086.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr17	74019356	rs60346043	G	A	2321.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:103,110:0.52:213
chr17	74019572	rs2257388	T	C	5241.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:1,185:0.99:186
chr17	74035543	rs7409	T	C	1447.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:84,67:0.44:151
chr17	74036573	rs2260516	A	T	1982.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:115,96:0.45:211
chr17	74036912	rs2598444	A	G	692.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:35,30:0.46:65
chr17	74037208	rs2598445	G	A	1283.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.151;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.98;ReadPosRankSum=0.244;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:79,64:0.45:143
chr17	74039867	rs1530834	T	C	1310.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:48,55:0.53:103
chr17	74046672	rs2665972	A	G	2422.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:153,122:0.44:275
chr17	74056413	rs2665998	C	T	2075.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:119,98:0.45:217
chr17	74063523	rs4789241	G	A	2601.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:85,114:0.57:199
chr17	74066447	rs2443168	T	A	5821.77	.	AC=1;AF=0.500;AN=2;DB;DP=678;set=Intersection	GT:AD:AF:DP	0/1:372,291:0.44:663
chr17	74077497	rs8836	G	C	4597.77	.	AC=1;AF=0.500;AN=2;DB;DP=453;set=Intersection	GT:AD:AF:DP	0/1:243,206:0.46:449
chr17	74079838	rs2665986	A	G	981.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:45,43:0.49:88
chr17	74081577	rs41282075	T	C	2144.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:73,96:0.57:169
chr17	74082339	rs140746643	T	C	228.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:8,11:0.58:19
chr17	74134318	rs34418968	A	AG	484.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.811;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.12;ReadPosRankSum=1.871;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:19,21:0.53:40
chr17	74141485	rs3744036	A	T	2280.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:140,116:0.45:256
chr17	74148736	rs74560598	G	A	156.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr17	74152366	rs881502	A	G	2569.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:143,124:0.46:267
chr17	74158736	rs62090128	G	A	3191.77	.	AC=1;AF=0.500;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	0/1:190,161:0.46:351
chr17	74160914	rs16968638	G	C	2625.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:164,135:0.45:299
chr17	74161533	rs16968642	C	T	2757.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:141,133:0.49:274
chr17	74162506	rs1376356	G	A	572.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:45,30:0.40:75
chr17	74163821	rs2289603	G	A	5513.77	.	AC=1;AF=0.500;AN=2;DB;DP=599;set=Intersection	GT:AD:AF:DP	0/1:316,278:0.47:594
chr17	74169889	rs71996459	CAGG	C	2511.73	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:81,69:0.46:150
chr17	74208424	rs9911122	G	A	5427.77	.	AC=1;AF=0.500;AN=2;DB;DP=498;set=Intersection	GT:AD:AF:DP	0/1:233,255:0.52:488
chr17	74208622	rs35372072	T	TA	699.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.116;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=0.996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.19;ReadPosRankSum=0.266;SOR=0.910;set=HC	GT:AD:AF:DP	0/1:63,50:0.44:113
chr17	74236115	rs8070711	G	C	1626.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:105,73:0.41:178
chr17	74261677	rs2585751	T	C	2974.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.87;SOR=0.899;set=HC	GT:AD:AF:DP	1/1:0,115:1.00:115
chr17	74261929	rs71382201	A	G	9684.77	.	AC=2;AF=1.00;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	1/1:2,369:0.99:371
chr17	74266322	rs712833	T	C	10871.77	.	AC=1;AF=0.500;AN=2;DB;DP=1106;set=Intersection	GT:AD:AF:DP	0/1:551,545:0.50:1096
chr17	74273299	rs73350377	G	A	2050.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:91,96:0.51:187
chr17	74275030	rs182972	T	C	3423.77	.	AC=1;AF=0.500;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	0/1:229,166:0.42:395
chr17	74276315	rs73350386	G	A	4913.77	.	AC=1;AF=0.500;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	0/1:222,230:0.51:452
chr17	74283170	.	T	C	324	.	AC=1;AF=0.500;AN=2;BRF=0.28;FR=0.5000;HP=1;HapScore=2;MGOF=38;MMLQ=24;MQ=59.64;NF=15;NR=4;PP=324;QD=18.8826953972;SC=CACACACACATGATGGGAGGG;SbPval=0.42;Source=Platypus;TC=69;TCF=57;TCR=12;TR=19;WE=74283178;WS=74283160;set=Platypus	GT:AD:AF:DP	1/0:50,19:0.28:69
chr17	74283214	rs346786	C	A	3309.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:99,86:0.46:185
chr17	74283253	rs8072620	A	G	5050.77	.	AC=1;AF=0.500;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	0/1:194,169:0.47:363
chr17	74283769	rs346785	T	C	970.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:44,40:0.48:84
chr17	74286082	rs4789273	C	T	5947.77	.	AC=1;AF=0.500;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	0/1:218,163:0.43:381
chr17	74286106	rs4789274	C	T	6028.77	.	AC=1;AF=0.500;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	0/1:229,170:0.43:399
chr17	74286173	rs17509527	A	G	2112.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:117,104:0.47:221
chr17	74287204	rs2279052	C	G	3705.77	.	AC=1;AF=0.500;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	0/1:182,176:0.49:358
chr17	74287389	rs2279053	T	C	2858.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:178,144:0.45:322
chr17	74287594	rs2279054	G	A	2793.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:147,132:0.47:279
chr17	74288564	rs35035566	CTGA	C	15897.73	.	AC=1;AF=0.500;AN=2;DB;DP=1092;set=Intersection	GT:AD:AF:DP	0/1:488,447:0.48:935
chr17	74289242	rs3803736	T	C	4187.77	.	AC=1;AF=0.500;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	0/1:267,193:0.42:460
chr17	74289500	rs3803737	G	A	3887.77	.	AC=1;AF=0.500;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	0/1:195,178:0.48:373
chr17	74289705	rs6501880	A	G	8484.77	.	AC=1;AF=0.500;AN=2;DB;DP=829;set=Intersection	GT:AD:AF:DP	0/1:408,403:0.50:811
chr17	74289839	rs6501881	G	A	5757.77	.	AC=1;AF=0.500;AN=2;DB;DP=529;set=Intersection	GT:AD:AF:DP	0/1:252,265:0.51:517
chr17	74289875	rs6501882	C	T	5052.77	.	AC=1;AF=0.500;AN=2;DB;DP=453;set=Intersection	GT:AD:AF:DP	0/1:216,228:0.51:444
chr17	74289908	rs6501883	A	G	5000.77	.	AC=1;AF=0.500;AN=2;DB;DP=480;set=Intersection	GT:AD:AF:DP	0/1:239,230:0.49:469
chr17	74290097	rs7225131	T	A	2985.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:123,134:0.52:257
chr17	74297784	.	A	ATTTTTT	94.37	.	AC=2;AF=1.00;AN=2;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.46;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr17	74300497	rs73996306	G	A	2515.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:142,123:0.46:265
chr17	74300916	rs8068457	G	C	880.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:50,43:0.46:93
chr17	74301070	rs8068763	G	A	1746.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:144,93:0.39:237
chr17	74303379	rs73996309	G	A	409.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:22,12:0.35:34
chr17	74307737	rs10459	T	C	4091.77	.	AC=1;AF=0.500;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	0/1:200,194:0.49:394
chr17	74308891	rs61440609	T	G	1936.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:105,93:0.47:198
chr17	74310084	rs56194157	A	C	564.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.478;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.82;ReadPosRankSum=0.611;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:38,26:0.41:64
chr17	74324729	rs346791	C	A	4379.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.782;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.54;ReadPosRankSum=-0.119;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:2,163:0.99:165
chr17	74326553	rs449114	G	A	5200.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.62;SOR=2.221;set=HC	GT:AD:AF:DP	1/1:0,114:1.00:114
chr17	74326556	rs399029	A	T	5200.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.70;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,119:1.00:119
chr17	74381567	rs346803	G	A	853.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:42,41:0.49:83
chr17	74383475	rs3744037	T	C	2455.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:192,128:0.40:320
chr17	74396421	rs3809691	G	C	5327.77	.	AC=1;AF=0.500;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	0/1:186,243:0.57:429
chr17	74397026	rs3809693	G	A	545.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:26,22:0.46:48
chr17	74398510	rs34234366	C	A	976.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:38,38:0.50:76
chr17	74401405	rs11290311	AG	A	9280.73	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:4,334:0.99:338
chr17	74401522	rs445683	C	T	2498.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:102,107:0.51:209
chr17	74468552	rs12942767	A	G	13224.77	.	AC=2;AF=1.00;AN=2;DB;DP=482;set=Intersection	GT:AD:AF:DP	1/1:0,480:1.00:480
chr17	74471298	rs12951122	G	A	2992.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:128,136:0.52:264
chr17	74473593	rs3833088	A	AG	2790.73	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:105,90:0.46:195
chr17	74475024	rs3744045	G	A	7824.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:2,295:0.99:297
chr17	74475975	rs3809694	C	A	1855.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:98,92:0.48:190
chr17	74476045	rs3826287	G	C	1502.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:91,69:0.43:160
chr17	74476089	rs138608987	ATGTGTGTGTG	A	412.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.346;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=0.000;QD=9.83;ReadPosRankSum=-1.560;SOR=0.458;set=HC	GT:AD:AF:DP	0/1:26,16:0.38:42
chr17	74476133	.	G	GTA	65.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.439;ClippingRankSum=-0.000;DP=34;ExcessHet=3.0103;FS=2.808;MLEAC=1;MLEAF=0.500;MQ=59.68;MQRankSum=-0.000;QD=7.30;ReadPosRankSum=0.272;SOR=1.170;set=HC	GT:AD:AF:DP	0/1:3,6:0.67:9
chr17	74477340	rs3826288	A	G	2430.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr17	74477691	rs11870168	C	T	1110.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr17	74527846	rs3217541	T	TG	2204.73	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:78,88:0.53:166
chr17	74534650	rs9914222	G	T	2423.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:140,116:0.45:256
chr17	74536332	.	T	TG	223	.	AC=1;AF=0.500;AN=2;BRF=0.41;FR=0.5000;HP=2;HapScore=4;MGOF=14;MMLQ=25;MQ=59.66;NF=22;NR=2;PP=223;QD=11.0833333333;SC=TGGCGGTTGGTCGGGGGGGGG;SbPval=0.99;Source=Platypus;TC=48;TCF=34;TCR=14;TR=24;WE=74536343;WS=74536322;set=Platypus	GT:AD:AF:DP	1/0:24,24:0.50:48
chr17	74536333	rs77817682	C	G	3650.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.44;SOR=2.393;set=HC	GT:AD:AF:DP	1/1:0,106:1.00:106
chr17	74536335	rs201716822	G	GT	491.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.201;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=2.314;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.46;ReadPosRankSum=0.780;SOR=0.427;set=HC	GT:AD:AF:DP	0/1:58,32:0.36:90
chr17	74536762	rs2289607	G	T	1009.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:25,38:0.60:63
chr17	74539092	rs4318240	C	T	18674.77	.	AC=2;AF=1.00;AN=2;DB;DP=718;set=Intersection	GT:AD:AF:DP	1/1:0,716:1.00:716
chr17	74540492	rs2278639	C	T	550.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:21,27:0.56:48
chr17	74540917	rs895157	A	C	3870.77	.	AC=1;AF=0.500;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	0/1:233,197:0.46:430
chr17	74541129	rs4232870	A	G	1254.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.292;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=3.949;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.35;ReadPosRankSum=-0.815;SOR=0.321;set=HC	GT:AD:AF:DP	0/1:32,62:0.66:94
chr17	74541137	rs4648339	C	T	579.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.304;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.92;ReadPosRankSum=-1.607;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:60,38:0.39:98
chr17	74541171	rs5742903	T	C	1889.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:95,93:0.49:188
chr17	74554739	rs4648343	C	G	2332.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:109,101:0.48:210
chr17	74555106	rs4647885	T	C	2145.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:66,93:0.58:159
chr17	74555455	rs147870028	C	T	304.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:30,16:0.35:46
chr17	74557681	rs4510053	A	C	9949.77	.	AC=2;AF=1.00;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	1/1:0,363:1.00:363
chr17	74557803	rs60161580	GT	G	7951.73	.	AC=2;AF=1.00;AN=2;DB;DP=478;set=Intersection	GT:AD:AF:DP	1/1:14,389:0.97:403
chr17	74559287	rs4451979	T	C	475.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:20,22:0.52:42
chr17	74563653	rs2241918	A	G	12124.77	.	AC=2;AF=1.00;AN=2;DB;DP=467;set=Intersection	GT:AD:AF:DP	1/1:0,464:1.00:464
chr17	74563706	rs60647948	A	G	4130.77	.	AC=1;AF=0.500;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	0/1:223,199:0.47:422
chr17	74570408	rs7207173	A	G	7781.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr17	74581914	rs3135934	C	G	5393.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr17	74581945	rs12449329	AA	GC	5672.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr17	74582025	rs1867561	G	C	953.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr17	74621635	rs2286595	C	T	1164.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:45,56:0.55:101
chr17	74625865	rs11433733	G	GT	137.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.061;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=2.707;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.75;ReadPosRankSum=-1.294;SOR=1.171;set=HC	GT:AD:AF:DP	0/1:34,16:0.32:50
chr17	74639530	rs719430	T	C	2184.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:118,109:0.48:227
chr17	74679830	rs78684537	G	A	1628.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:45,72:0.62:117
chr17	74681435	rs2286593	A	G	306.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:25,13:0.34:38
chr17	74684439	rs188871607	G	A	4423.77	.	AC=1;AF=0.500;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	0/1:214,212:0.50:426
chr17	74684598	rs4788942	C	T	4155.77	.	AC=1;AF=0.500;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	0/1:212,194:0.48:406
chr17	74684858	rs7219390	T	C	1412.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:51,65:0.56:116
chr17	74707050	rs71383084	G	C	55.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.43;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr17	74707086	rs372946783	CGTCGCCGCGCCCG	C	116.94	.	AC=1;AF=0.500;AN=2;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.13;MQRankSum=0.253;QD=23.39;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:1,4:0.80:5
chr17	74716759	rs12943725	A	G	780.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr17	74717386	rs189310567	G	T	2036.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:107,96:0.47:203
chr17	74721488	.	C	CAA	286.70	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.537;ClippingRankSum=0.000;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.69;ReadPosRankSum=-0.305;SOR=1.473;set=HC	GT:AD:AF:DP	0/1:10,23:0.70:33
chr17	74721967	rs376352692	TA	T	241.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.006;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=5.776;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=2.377;QD=1.75;ReadPosRankSum=0.908;SOR=1.302;set=HC	GT:AD:AF:DP	0/1:97,41:0.30:138
chr17	74728938	rs4789351	C	T	854.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr17	74729588	rs34243161	C	CT	1479.73	.	AC=1;AF=0.500;AN=2;DB;DP=262;MQ=60.08;set=Intersection	GT:AD:AF:DP	0/1:126,99:0.44:225
chr17	74732507	rs237058	A	G	27720.77	.	AC=2;AF=1.00;AN=2;DB;DP=1024;set=Intersection	GT:AD:AF:DP	1/1:0,1006:1.00:1006
chr17	74733099	rs237057	G	A	15462.77	.	AC=2;AF=1.00;AN=2;DB;DP=592;set=Intersection	GT:AD:AF:DP	1/1:0,584:1.00:584
chr17	74733403	rs3744061	G	A	260.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:7,10:0.59:17
chr17	74734323	rs237054	G	A	3229.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr17	74734598	rs237053	C	T	8092.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr17	74736999	.	CT	C	478.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.919;ClippingRankSum=0.000;DP=227;ExcessHet=3.0103;FS=0.709;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=2.042;QD=2.23;ReadPosRankSum=1.383;SOR=0.564;set=HC	GT:AD:AF:DP	0/1:138,77:0.36:215
chr17	74739552	rs184512307	G	A	6011.77	.	AC=1;AF=0.500;AN=2;DB;DP=542;set=Intersection	GT:AD:AF:DP	0/1:242,289:0.54:531
chr17	74750215	rs11399997	C	CT	16146.73	.	AC=2;AF=1.00;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	1/1:0,435:1.00:435
chr17	74750331	rs116719	C	T	3986.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr17	74857515	rs499828	A	C	351.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.31;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr17	74857676	rs13342029	A	G	237.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:15,13:0.46:28
chr17	74899234	rs568277	T	A	886.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:70,43:0.38:113
chr17	74899320	rs567361	G	C	3689.77	.	AC=1;AF=0.500;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	0/1:220,182:0.45:402
chr17	74902358	rs3803742	C	T	268.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:16,13:0.45:29
chr17	74920957	rs3889146	G	T	5387.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr17	74921257	rs8067585	G	A	2143.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:89,100:0.53:189
chr17	74922636	rs12450749	G	A	3022.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr17	74922652	rs11653088	C	T	4226.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr17	74922706	rs33966966	C	T	3603.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:169,165:0.49:334
chr17	74928758	rs79286496	C	T	7384.77	.	AC=1;AF=0.500;AN=2;DB;DP=745;set=Intersection	GT:AD:AF:DP	0/1:375,358:0.49:733
chr17	74928921	rs77352627	C	T	2309.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.421;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=1.404;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.19;ReadPosRankSum=1.622;SOR=1.029;set=HC	GT:AD:AF:DP	0/1:47,62:0.57:109
chr17	74928931	rs8078608	C	T	2153.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.459;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=1.713;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.93;ReadPosRankSum=0.310;SOR=1.275;set=HC	GT:AD:AF:DP	0/1:35,55:0.61:90
chr17	74929442	rs12600695	A	G	3191.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:129,146:0.53:275
chr17	74936576	rs8081793	G	A	13592.77	.	AC=1;AF=0.500;AN=2;DB;DP=1324;set=Intersection	GT:AD:AF:DP	0/1:652,662:0.50:1314
chr17	74937066	rs9900337	C	G	1000.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:34,42:0.55:76
chr17	74942478	rs8067984	C	T	6938.77	.	AC=1;AF=0.500;AN=2;DB;DP=726;set=Intersection	GT:AD:AF:DP	0/1:367,355:0.49:722
chr17	74944709	rs9894270	T	C	14617.77	.	AC=2;AF=1.00;AN=2;DB;DP=573;set=Intersection	GT:AD:AF:DP	1/1:1,562:1.00:563
chr17	75085230	rs9900566	C	G	2699.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr17	75190846	rs673918	A	C	9940.77	.	AC=2;AF=1.00;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	1/1:0,365:1.00:365
chr17	75190962	rs674402	C	T	3160.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:173,154:0.47:327
chr17	75203092	rs7226135	C	T	148.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:15,8:0.35:23
chr17	75207966	rs2280269	A	G	373.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:13,16:0.55:29
chr17	75303298	rs4789439	T	C	3407.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:170,155:0.48:325
chr17	75316497	rs3760143	C	T	2169.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:121,107:0.47:228
chr17	75369578	rs7217986	T	C	4841.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:1,184:0.99:185
chr17	75401190	rs2164449	G	A	5594.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr17	75401310	rs2117924	C	T	3001.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr17	75478694	rs416438	T	C	5489.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr17	75494705	rs2627223	A	G	3413.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr17	75494746	rs1059485	A	G	815.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:47,43:0.48:90
chr17	75494787	rs5822173	T	TC	455.73	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:13,21:0.62:34
chr17	75495065	rs448203	T	C	2309.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:174,120:0.41:294
chr17	75495397	rs9038	T	C	4852.77	.	AC=1;AF=0.500;AN=2;DB;DP=497;set=Intersection	GT:AD:AF:DP	0/1:250,234:0.48:484
chr17	75834770	rs9910282	A	G	1922.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:69,91:0.57:160
chr17	76047561	rs201980311	TAAA	T	785.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.635;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.46;ReadPosRankSum=0.481;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:13,32:0.71:45
chr17	76047612	rs4411562	G	A	412.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:13,18:0.58:31
chr17	76060866	rs34293811	C	G	3631.77	.	AC=1;AF=0.500;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	0/1:169,174:0.51:343
chr17	76060954	rs61730171	A	C	1571.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:83,78:0.48:161
chr17	76067285	rs2311440	C	G	3007.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:166,142:0.46:308
chr17	76087361	rs113064593	T	C	602.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:24,25:0.51:49
chr17	76093866	rs2290906	T	C	4337.77	.	AC=1;AF=0.500;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	0/1:189,205:0.52:394
chr17	76094111	rs2290905	C	T	1596.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:36,66:0.65:102
chr17	76098719	rs3751962	A	G	1015.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:45,47:0.51:92
chr17	76105731	rs2613513	C	T	7859.77	.	AC=1;AF=0.500;AN=2;DB;DP=811;set=Intersection	GT:AD:AF:DP	0/1:422,385:0.48:807
chr17	76105754	rs2748431	G	A	6638.77	.	AC=1;AF=0.500;AN=2;DB;DP=769;set=Intersection	GT:AD:AF:DP	0/1:401,362:0.47:763
chr17	76109073	rs2253277	C	T	678.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:24,29:0.55:53
chr17	76109358	rs910557	G	A	2472.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:122,117:0.49:239
chr17	76113954	rs2613516	G	A	2858.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:138,135:0.49:273
chr17	76114963	rs2748430	C	G	1488.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr17	76114975	rs2748429	G	T	1414.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr17	76115181	rs2252496	A	T	1234.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:108,64:0.37:172
chr17	76115353	rs2748428	T	C	7485.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr17	76116017	rs743047	C	A	1477.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:72,69:0.49:141
chr17	76116153	rs2926778	T	C	2483.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:150,122:0.45:272
chr17	76116233	rs146853327	CTTT	C	715.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.357;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=3.923;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=0.530;QD=24.68;ReadPosRankSum=-0.704;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:2,27:0.93:29
chr17	76117361	rs2073285	T	C	1119.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr17	76117971	rs1997978	G	A	12024.77	.	AC=2;AF=1.00;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	1/1:0,413:1.00:413
chr17	76119930	rs55677349	T	C	693.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:26,31:0.54:57
chr17	76120784	rs185225783	C	T	2593.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:104,118:0.53:222
chr17	76121318	rs12449858	G	A	2340.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:104,113:0.52:217
chr17	76121760	rs7502920	C	T	1095.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:33,45:0.58:78
chr17	76128386	rs1354985	G	C	4523.77	.	AC=1;AF=0.500;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	0/1:206,210:0.50:416
chr17	76128662	rs1396149	G	C	2246.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:90,88:0.49:178
chr17	76130575	rs7208422	A	T	19165.77	.	AC=2;AF=1.00;AN=2;DB;DP=735;set=Intersection	GT:AD:AF:DP	1/1:0,733:1.00:733
chr17	76131070	rs12452890	G	A	14101.77	.	AC=2;AF=1.00;AN=2;DB;DP=533;set=Intersection	GT:AD:AF:DP	1/1:0,529:1.00:529
chr17	76133746	rs12449680	A	G	1781.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:88,84:0.49:172
chr17	76133908	rs16970849	G	A	1186.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:88,57:0.39:145
chr17	76134828	rs7221365	C	A	9437.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr17	76135148	rs73999646	G	T	4849.77	.	AC=1;AF=0.500;AN=2;DB;DP=525;set=Intersection	GT:AD:AF:DP	0/1:287,233:0.45:520
chr17	76137198	rs369764	T	G	2746.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr17	76142402	rs2310998	G	A	652.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.717;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.999;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.53;ReadPosRankSum=1.862;SOR=0.505;set=HC	GT:AD:AF:DP	0/1:28,34:0.55:62
chr17	76142811	rs147459634	GT	G	2124.73	.	AC=1;AF=0.500;AN=2;DB;DP=100;MQ=60.22;set=Intersection	GT:AD:AF:DP	0/1:35,62:0.64:97
chr17	76143009	rs7217374	G	A	2795.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:106,134:0.56:240
chr17	76157266	rs4071641	T	C	12440.77	.	AC=2;AF=1.00;AN=2;DB;DP=487;set=Intersection	GT:AD:AF:DP	1/1:0,475:1.00:475
chr17	76157348	rs12951279	G	A	3990.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr17	76168219	rs10358	C	T	756.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:25,34:0.58:59
chr17	76171277	rs8072887	C	T	4602.77	.	AC=1;AF=0.500;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	0/1:178,212:0.54:390
chr17	76178748	rs1143697	T	C	5114.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:1,195:0.99:196
chr17	76182766	.	AAGGGG	A	1452.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.223;ClippingRankSum=0.000;DP=114;ExcessHet=3.0103;FS=2.053;MLEAC=1;MLEAF=0.500;MQ=62.97;MQRankSum=-6.177;QD=13.58;ReadPosRankSum=1.084;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:58,49:0.46:107
chr17	76182771	rs150794517	G	A	1303.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.928;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.99;MQRankSum=5.638;QD=14.99;ReadPosRankSum=1.435;SOR=0.950;set=HC	GT:AD:AF:DP	0/1:54,33:0.38:87
chr17	76182776	rs139163612	G	A	3131.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.514;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=1.553;MLEAC=1;MLEAF=0.500;MQ=63.89;MQRankSum=8.318;QD=19.70;ReadPosRankSum=1.133;SOR=1.120;set=HC	GT:AD:AF:DP	0/1:79,80:0.50:159
chr17	76182781	rs149930991	G	A	1648.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.122;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=2.804;MLEAC=1;MLEAF=0.500;MQ=63.78;MQRankSum=7.386;QD=14.59;ReadPosRankSum=1.494;SOR=1.539;set=HC	GT:AD:AF:DP	0/1:70,43:0.38:113
chr17	76182805	.	G	GGAGGGGAGGC	3542.73	.	AC=1;AF=0.500;AN=2;DP=234;set=Intersection	GT:AD:AF:DP	0/1:120,108:0.47:228
chr17	76183043	rs1071664	A	G	21477.77	.	AC=2;AF=1.00;AN=2;DB;DP=818;set=Intersection	GT:AD:AF:DP	1/1:5,805:0.99:810
chr17	76183348	rs118063987	T	G	279.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:28,13:0.32:41
chr17	76187160	rs17640750	C	T	1231.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:108,67:0.38:175
chr17	76188753	rs12450989	C	A	11802.77	.	AC=1;AF=0.500;AN=2;DB;DP=675;MQ=60.03;set=Intersection	GT:AD:AF:DP	0/1:360,313:0.47:673
chr17	76188773	rs201690565	C	CT	12648.73	.	AC=1;AF=0.500;AN=2;DB;DP=726;set=Intersection	GT:AD:AF:DP	0/1:385,339:0.47:724
chr17	76198458	rs11649894	C	T	615.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:24,30:0.56:54
chr17	76198754	rs35822441	T	C	3217.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:167,157:0.48:324
chr17	76210367	rs9904341	G	C	2423.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:163,123:0.43:286
chr17	76212961	.	A	AT	48.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.166;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.32;ReadPosRankSum=3.338;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:27,10:0.27:37
chr17	76219591	rs2071214	G	A	4147.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr17	76219783	rs2239680	T	C	806.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:31,36:0.54:67
chr17	76228048	rs186093980	C	T	416.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.507;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=9.066;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.44;ReadPosRankSum=1.714;SOR=0.038;set=HC	GT:AD:AF:DP	0/1:10,17:0.63:27
chr17	76228088	rs8068943	T	A	1059.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr17	76230729	rs11077350	T	C	7369.73	.	AC=1;AF=0.500;AN=2;DB;DP=718;set=Intersection	GT:AD:AF:DP	0/1:343,357:0.51:700
chr17	76235015	rs880190	G	A	4081.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr17	76267779	rs872358	A	C	4981.77	.	AC=1;AF=0.500;AN=2;DB;DP=474;set=Intersection	GT:AD:AF:DP	0/1:234,231:0.50:465
chr17	76354380	rs2280148	T	G	1209.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:62,59:0.49:121
chr17	76394042	rs16971107	G	A	1023.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:26,42:0.62:68
chr17	76394195	rs2292645	T	C	4726.77	.	AC=1;AF=0.500;AN=2;DB;DP=453;set=Intersection	GT:AD:AF:DP	0/1:210,229:0.52:439
chr17	76394449	rs2292644	C	T	1349.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:77,60:0.44:137
chr17	76395421	rs2292643	G	A	3504.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.627;ClippingRankSum=0.000;DB;DP=223;ExcessHet=3.0103;FS=3.334;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.93;ReadPosRankSum=0.971;SOR=1.011;set=HC	GT:AD:AF:DP	0/1:127,93:0.42:220
chr17	76395430	rs2292642	C	T	3835.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.840;ClippingRankSum=0.000;DB;DP=258;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.16;ReadPosRankSum=0.084;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:144,109:0.43:253
chr17	76395750	rs12450500	C	T	2152.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.807;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.22;ReadPosRankSum=1.032;SOR=0.460;set=HC	GT:AD:AF:DP	0/1:55,57:0.51:112
chr17	76396963	rs3817294	A	G	1861.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:51,77:0.60:128
chr17	76400236	rs3744219	G	A	1420.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:63,43:0.41:106
chr17	76400251	rs3744218	C	G	1237.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:32,47:0.59:79
chr17	76400258	rs3744217	G	A	1076.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.745;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.61;ReadPosRankSum=-1.874;SOR=0.876;set=HC	GT:AD:AF:DP	0/1:41,28:0.41:69
chr17	76400268	rs3826323	C	G	789.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.024;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=1.951;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.10;ReadPosRankSum=-2.231;SOR=1.423;set=HC	GT:AD:AF:DP	0/1:34,22:0.39:56
chr17	76410871	rs3744216	G	A	5803.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr17	76411154	rs3833108	T	TG	2849.73	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr17	76422473	rs4969188	T	C	2911.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr17	76423097	rs2271613	G	A	12031.77	.	AC=2;AF=1.00;AN=2;DB;DP=465;set=Intersection	GT:AD:AF:DP	1/1:0,463:1.00:463
chr17	76424482	rs651806	A	G	4100.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr17	76433685	rs2289757	A	G	2044.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr17	76433898	rs12941494	T	C	8508.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr17	76435448	rs12150123	C	T	221.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:10,11:0.52:21
chr17	76445727	.	CGCCACCACTCCCT	C	4928.73	.	AC=1;AF=0.500;AN=2;DP=317;set=Intersection	GT:AD:AF:DP	0/1:142,129:0.48:271
chr17	76451921	rs8069561	A	G	10509.77	.	AC=2;AF=1.00;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	1/1:0,391:1.00:391
chr17	76455218	rs2289754	G	A	5186.77	.	AC=1;AF=0.500;AN=2;DB;DP=551;set=Intersection	GT:AD:AF:DP	0/1:287,256:0.47:543
chr17	76456352	rs623336	T	C	10108.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	1/1:0,385:1.00:385
chr17	76456403	rs148454093	C	CGTGCATGTGT	2369.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.123;ClippingRankSum=0.000;DB;DP=240;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=2.585;QD=18.51;ReadPosRankSum=-1.352;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:66,62:0.48:128
chr17	76457559	rs692529	T	G	754.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:39,33:0.46:72
chr17	76457910	rs640292	G	C	545.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:14,19:0.58:33
chr17	76462770	rs691225	G	A	4802.77	.	AC=1;AF=0.500;AN=2;DB;DP=476;set=Intersection	GT:AD:AF:DP	0/1:235,234:0.50:469
chr17	76480848	rs12952246	T	C	833.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr17	76481608	rs11077370	A	G	2483.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr17	76481693	rs11872051	C	G	10312.77	.	AC=2;AF=1.00;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	1/1:0,399:1.00:399
chr17	76481997	rs12944880	T	C	4436.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr17	76482256	rs691142	A	G	12020.77	.	AC=2;AF=1.00;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	1/1:0,454:1.00:454
chr17	76482432	rs691151	A	G	14661.77	.	AC=2;AF=1.00;AN=2;DB;DP=547;set=Intersection	GT:AD:AF:DP	1/1:0,540:1.00:540
chr17	76486622	rs113420656	G	GGTCT	1821.73	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:34,45:0.57:79
chr17	76488973	rs1983306	A	G	1065.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr17	76491127	rs691652	TG	CC	8405.77	.	AC=1;AF=0.500;AN=2;DB;DP=388;JOINED;set=Intersection	GT:AD:AF:DP	0/1:168,215:0.56:383
chr17	76491194	rs11077375	G	A	2138.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:58,86:0.60:144
chr17	76491211	rs11077376	G	A	1766.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:50,71:0.59:121
chr17	76495050	rs691291	C	T	3634.77	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:161,175:0.52:336
chr17	76496492	rs2028734	A	G	3522.77	.	AC=1;AF=0.500;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	0/1:162,173:0.52:335
chr17	76496577	rs2028735	C	T	2130.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:78,91:0.54:169
chr17	76497920	rs690844	C	A	7315.77	.	AC=1;AF=0.500;AN=2;DB;DP=843;set=Intersection	GT:AD:AF:DP	0/1:483,357:0.42:840
chr17	76498406	rs930572	A	G	3704.77	.	AC=1;AF=0.500;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	0/1:179,171:0.49:350
chr17	76498692	rs930571	C	T	5733.77	.	AC=1;AF=0.500;AN=2;DB;DP=623;set=Intersection	GT:AD:AF:DP	0/1:333,278:0.45:611
chr17	76498844	rs7218164	A	G	1735.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:72,74:0.51:146
chr17	76502734	rs11077378	T	C	460.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:24,19:0.44:43
chr17	76503560	rs62073553	C	A	6117.77	.	AC=1;AF=0.500;AN=2;DB;DP=595;set=Intersection	GT:AD:AF:DP	0/1:303,286:0.49:589
chr17	76503593	rs9896398	T	C	4981.77	.	AC=1;AF=0.500;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	0/1:234,232:0.50:466
chr17	76503966	rs9902653	T	C	1943.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:70,84:0.55:154
chr17	76506607	rs867654	G	A	1869.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:101,92:0.48:193
chr17	76521057	rs62075876	C	T	8267.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:2,299:0.99:301
chr17	76521121	rs17729253	T	C	13015.77	.	AC=2;AF=1.00;AN=2;DB;DP=482;set=Intersection	GT:AD:AF:DP	1/1:1,479:1.00:480
chr17	76521291	rs62075877	T	C	5042.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr17	76521308	rs62075878	C	T	4281.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr17	76522785	rs61744544	C	T	3453.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr17	76522837	rs74965213	A	G	2865.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr17	76523191	rs62075880	G	A	1686.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr17	76523234	rs62075881	A	G	801.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr17	76525475	rs884714	T	G	3465.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr17	76525565	rs4273108	A	G	11595.77	.	AC=2;AF=1.00;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	1/1:0,408:1.00:408
chr17	76525805	rs4969212	C	G	10240.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:0,358:1.00:358
chr17	76528591	rs11868065	C	T	2840.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr17	76528790	rs11651537	A	G	4734.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr17	76528831	rs11077379	G	A	4025.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr17	76533269	rs111781371	A	AAAAG	6008.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.810;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=63.14;MQRankSum=0.219;QD=37.09;ReadPosRankSum=0.754;SOR=0.796;set=HC	GT:AD:AF:DP	1/1:1,161:0.99:162
chr17	76535759	rs7220871	T	C	2208.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr17	76535948	rs7221209	T	C	5682.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr17	76554114	rs62075923	A	G	11229.77	.	AC=2;AF=1.00;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	1/1:0,397:1.00:397
chr17	76554147	rs4969171	A	G	14433.77	.	AC=2;AF=1.00;AN=2;DB;DP=558;set=Intersection	GT:AD:AF:DP	1/1:0,555:1.00:555
chr17	76557862	rs894966	T	C	8762.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr17	76558159	rs2376587	T	C	1972.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr17	76563297	rs117345200	C	T	3189.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:126,151:0.55:277
chr17	76565341	rs72920970	G	A	11199.77	.	AC=2;AF=1.00;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	1/1:0,402:1.00:402
chr17	76567013	rs12948559	C	T	6062.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.02;SOR=1.651;set=HC	GT:AD:AF:DP	1/1:0,233:1.00:233
chr17	76567332	rs12949510	C	A	2442.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr17	76567707	rs894968	T	C	6498.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr17	76567883	rs4969148	G	C	4598.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr17	76567910	rs4969149	G	A	3354.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr17	76568716	rs8073667	G	T	490.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.073;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=2.550;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.05;ReadPosRankSum=0.075;SOR=0.158;set=HC	GT:AD:AF:DP	0/1:37,24:0.39:61
chr17	76569056	rs12951733	G	T	746.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:32,31:0.49:63
chr17	76570771	rs12946156	G	A	574.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:35,25:0.42:60
chr17	76571269	rs9903478	A	C	1381.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr17	76672002	rs1126607	T	C	1101.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:137,63:0.32:200
chr17	76696613	.	C	CT	88.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.095;ClippingRankSum=0.000;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.803;QD=1.20;ReadPosRankSum=-0.823;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:58,16:0.22:74
chr17	76794774	rs3744799	T	C	1540.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:76,72:0.49:148
chr17	76794981	rs2279308	A	G	5029.77	.	AC=1;AF=0.500;AN=2;DB;DP=612;set=Intersection	GT:AD:AF:DP	0/1:345,260:0.43:605
chr17	76798548	rs71964596	TTTTTTC	T	803.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.300;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.37;ReadPosRankSum=-0.124;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:42,23:0.35:65
chr17	76799795	rs1057040	G	A	1487.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:74,65:0.47:139
chr17	76799860	rs3088040	T	C	925.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:79,50:0.39:129
chr17	76799898	rs9302885	A	G	1033.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.978;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.20;ReadPosRankSum=0.464;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:75,51:0.40:126
chr17	76803263	rs35820493	G	A	3309.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:120,149:0.55:269
chr17	76817090	rs3744793	C	T	4236.77	.	AC=1;AF=0.500;AN=2;DB;DP=479;set=Intersection	GT:AD:AF:DP	0/1:261,214:0.45:475
chr17	76832133	rs900349	T	C	645.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:16,24:0.60:40
chr17	76867185	rs55743137	G	T	3157.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr17	76970879	rs3744166	A	G	13428.77	.	AC=2;AF=1.00;AN=2;DB;DP=515;set=Intersection	GT:AD:AF:DP	1/1:0,509:1.00:509
chr17	76988785	rs11891	G	A	1980.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:129,98:0.43:227
chr17	76993546	rs8077024	A	G	3669.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:157,173:0.52:330
chr17	77089515	rs4789891	G	T	439.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:16,18:0.53:34
chr17	77089630	rs371204042	GA	G	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.616;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=2.145;QD=0.24;ReadPosRankSum=1.435;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:108,30:0.22:138
chr17	77093255	rs147472360	TC	T	36.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.702;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.60;ReadPosRankSum=-0.786;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:18,5:0.22:23
chr17	77097649	rs11651975	G	A	2637.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:150,128:0.46:278
chr17	77097811	rs2612798	G	C	1316.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:71,60:0.46:131
chr17	77102966	rs36122090	T	TC	2868.73	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:2,92:0.98:94
chr17	77704912	rs8074547	T	C	691.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:41,32:0.44:73
chr17	77705045	rs8074728	T	C	4343.77	.	AC=1;AF=0.500;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	0/1:188,208:0.53:396
chr17	77708970	rs76811489	C	T	5145.77	.	AC=1;AF=0.500;AN=2;DB;DP=571;set=Intersection	GT:AD:AF:DP	0/1:323,242:0.43:565
chr17	77709527	.	C	CT	144.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.344;ClippingRankSum=0.000;DP=116;ExcessHet=3.0103;FS=4.611;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.650;QD=1.86;ReadPosRankSum=-0.741;SOR=0.254;set=HC	GT:AD:AF:DP	0/1:60,18:0.23:78
chr17	77751983	rs71368052	C	G	1203.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr17	77752147	rs56050112	T	C	3617.77	.	AC=1;AF=0.500;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	0/1:167,180:0.52:347
chr17	77753245	rs143293175	C	CTG	2611.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.872;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=0.592;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=1.588;QD=16.43;ReadPosRankSum=-0.631;SOR=0.777;set=HC	GT:AD:AF:DP	0/1:88,71:0.45:159
chr17	77758484	rs3751956	G	A	5175.77	.	AC=1;AF=0.500;AN=2;DB;DP=500;set=Intersection	GT:AD:AF:DP	0/1:242,248:0.51:490
chr17	77808240	.	CGTG	C	290.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.340;ClippingRankSum=0.000;DP=289;ExcessHet=3.0103;FS=4.726;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.355;QD=1.26;ReadPosRankSum=-0.299;SOR=0.219;set=HC	GT:AD:AF:DP	0/1:207,24:0.10:231
chr17	77809591	.	GC	G	240.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.286;ClippingRankSum=0.000;DP=245;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=0.000;QD=1.50;ReadPosRankSum=-1.416;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:131,29:0.18:160
chr17	77811733	rs371298714	TA	T	343.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.583;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=0.931;QD=5.73;ReadPosRankSum=1.318;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:23,37:0.62:60
chr17	77811854	rs2289728	G	A	192.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.864;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=1.515;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.22;ReadPosRankSum=-0.534;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:19,12:0.39:31
chr17	77914561	rs2241950	C	T	953.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:27,40:0.60:67
chr17	77916134	rs2650236	G	A	1466.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr17	77922612	rs8079001	C	T	2311.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:170,114:0.40:284
chr17	77923478	rs894858	G	A	998.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:44,47:0.52:91
chr17	77925393	rs35286723	G	A	4029.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:136,186:0.58:322
chr17	77984141	rs35922784	C	T	12559.77	.	AC=2;AF=1.00;AN=2;DB;DP=474;set=Intersection	GT:AD:AF:DP	1/1:0,468:1.00:468
chr17	78010413	rs3752042	C	A	2044.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr17	78010710	rs3752040	C	T	1935.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:82,93:0.53:175
chr17	78011842	rs3764438	G	A	916.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr17	78013724	rs2289527	G	C	6734.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr17	78021037	rs7207441	A	G	8465.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chr17	78021214	rs7212525	T	C	3615.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr17	78021260	rs7212643	T	C	2003.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr17	78022378	rs2289530	C	G	1793.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:68,85:0.56:153
chr17	78023614	rs7219552	G	A	682.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:65,34:0.34:99
chr17	78023722	rs2289531	C	T	3925.77	.	AC=1;AF=0.500;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	0/1:237,191:0.45:428
chr17	78032915	rs11654770	C	T	1218.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:47,54:0.53:101
chr17	78039469	rs56126512	C	T	674.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:25,27:0.52:52
chr17	78055758	rs35578653	T	G	5608.77	.	AC=1;AF=0.500;AN=2;DB;DP=496;set=Intersection	GT:AD:AF:DP	0/1:224,261:0.54:485
chr17	78059889	rs60684213	G	A	2551.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:117,126:0.52:243
chr17	78060109	rs73436177	G	A	451.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:15,19:0.56:34
chr17	78061317	rs11150839	A	C	760.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:27,31:0.53:58
chr17	78061353	rs11150840	G	A	1527.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:54,67:0.55:121
chr17	78064015	rs4889953	G	C	7914.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.803;ClippingRankSum=0.000;DB;DP=590;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.85;MQRankSum=-7.735;QD=13.79;ReadPosRankSum=1.191;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:277,297:0.52:574
chr17	78064064	rs7207166	G	A	5980.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.515;ClippingRankSum=0.000;DB;DP=355;ExcessHet=3.0103;FS=0.811;MLEAC=1;MLEAF=0.500;MQ=57.55;MQRankSum=-9.809;QD=17.34;ReadPosRankSum=-1.215;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:172,173:0.50:345
chr17	78064145	.	A	ACAC	2921	.	AC=1;AF=0.500;AN=2;BRF=0.56;FR=0.5000;HP=3;HapScore=1;MGOF=21;MMLQ=23;MQ=54.46;NF=26;NR=55;PP=2921;QD=20;SC=TGCACGAACAAGGGACGCGCG;SbPval=0.36;Source=Platypus;TC=211;TCF=61;TCR=150;TR=81;WE=78064153;WS=78064106;set=Platypus	GT:AD:AF:DP	1/0:130,81:0.38:211
chr17	78064216	.	CAGCACGTGCATGAACAACACAGGACACACACA	C	1376.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.801;ClippingRankSum=0.000;DP=478;ExcessHet=3.0103;FS=5.114;MLEAC=1;MLEAF=0.500;MQ=59.23;MQRankSum=-1.306;QD=7.17;ReadPosRankSum=-0.323;SOR=1.115;set=HC	GT:AD:AF:DP	0/1:142,50:0.26:192
chr17	78069324	rs1561810	C	A	4411.77	.	AC=1;AF=0.500;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	0/1:202,212:0.51:414
chr17	78070996	rs72849388	C	T	1488.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:84,67:0.44:151
chr17	78071052	rs12952612	T	C	3509.77	.	AC=1;AF=0.500;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	0/1:218,177:0.45:395
chr17	78071247	rs59252872	A	G	2209.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:110,106:0.49:216
chr17	78073201	rs55990144	G	A	438.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.189;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=1.238;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.97;ReadPosRankSum=-0.300;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:21,23:0.52:44
chr17	78073355	rs56407805	A	G	1500.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:73,74:0.50:147
chr17	78073562	rs2304854	A	G	3282.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:147,157:0.52:304
chr17	78073589	rs2304853	T	C	2696.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:111,123:0.53:234
chr17	78078709	rs1800300	T	C	10224.77	.	AC=1;AF=0.500;AN=2;DB;DP=771;set=Intersection	GT:AD:AF:DP	0/1:331,434:0.57:765
chr17	78079481	rs8069491	C	G	1399.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:84,71:0.46:155
chr17	78079509	rs12452721	T	G	1995.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:124,99:0.44:223
chr17	78079544	rs3816256	C	G	2589.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:164,132:0.45:296
chr17	78079597	rs1042393	A	G	2877.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:150,143:0.49:293
chr17	78079669	rs1042395	G	A	1579.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:56,73:0.57:129
chr17	78081307	rs78855075	C	T	2828.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:145,133:0.48:278
chr17	78081526	rs3071247	A	AGCAGCGG	5640.73	.	AC=1;AF=0.500;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	0/1:171,163:0.49:334
chr17	78081551	rs2304845	T	C	2689.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:136,131:0.49:267
chr17	78081661	rs1800303	A	T	2749.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:90,127:0.59:217
chr17	78081707	rs2252455	G	A	2354.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:66,105:0.61:171
chr17	78081982	rs2241888	G	A	1962.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:90,93:0.51:183
chr17	78082005	rs2241887	C	T	2673.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:122,125:0.51:247
chr17	78082504	rs1800304	G	A	3294.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:127,157:0.55:284
chr17	78083726	rs2278619	A	G	6039.77	.	AC=1;AF=0.500;AN=2;DB;DP=645;set=Intersection	GT:AD:AF:DP	0/1:336,304:0.47:640
chr17	78083791	rs1800305	C	T	6451.77	.	AC=1;AF=0.500;AN=2;DB;DP=682;set=Intersection	GT:AD:AF:DP	0/1:355,322:0.48:677
chr17	78084507	rs2304844	G	C	805.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:46,34:0.42:80
chr17	78084688	rs2304843	C	A	6181.77	.	AC=1;AF=0.500;AN=2;DB;DP=710;set=Intersection	GT:AD:AF:DP	0/1:395,313:0.44:708
chr17	78084940	rs199788201	GC	G	1040.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.198;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=18.032;MLEAC=1;MLEAF=0.500;MQ=63.73;MQRankSum=5.487;QD=18.92;ReadPosRankSum=1.820;SOR=1.946;set=HC	GT:AD:AF:DP	0/1:25,30:0.55:55
chr17	78084942	rs4889817	G	T	1049.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.461;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=16.300;MLEAC=1;MLEAF=0.500;MQ=64.11;MQRankSum=5.330;QD=19.81;ReadPosRankSum=1.783;SOR=1.942;set=HC	GT:AD:AF:DP	0/1:23,30:0.57:53
chr17	78086021	.	C	T	2799.77	.	AC=1;AF=0.500;AN=2;DP=257;set=Intersection	GT:AD:AF:DP	0/1:138,117:0.46:255
chr17	78086043	rs2304838	C	T	2628.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:78,101:0.56:179
chr17	78086846	rs2304836	A	G	3569.77	.	AC=1;AF=0.500;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	0/1:175,171:0.49:346
chr17	78090928	rs2304832	G	A	2146.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:98,90:0.48:188
chr17	78091405	rs1126690	G	A	3128.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:140,155:0.53:295
chr17	78092063	rs1042397	G	A	2698.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:137,132:0.49:269
chr17	78093221	rs2229221	G	A	1748.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:65,71:0.52:136
chr17	78111449	rs2289535	A	C	969.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:37,39:0.51:76
chr17	78111877	rs2361710	T	C	2448.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:185,131:0.41:316
chr17	78113441	rs376945041	A	G	929.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:72,45:0.38:117
chr17	78114991	rs8082247	T	C	1580.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:96,65:0.40:161
chr17	78115484	rs935117	A	C	1264.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:56,56:0.50:112
chr17	78120828	.	GTGCCGCTGCCGACCTCGC	G	171.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.255;ClippingRankSum=0.000;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=-0.323;QD=5.92;ReadPosRankSum=0.456;SOR=0.351;set=HC	GT:AD:AF:DP	0/1:21,8:0.28:29
chr17	78120846	.	C	CTG	757	.	AC=1;AF=0.500;AN=2;BRF=0.19;FR=0.5000;HP=1;HapScore=2;MGOF=8;MMLQ=24;MQ=57.59;NF=2;NR=15;PP=757;QD=46.0;SC=GCCGACCTCGCTGCCGCTGCC;SbPval=0.31;Source=Platypus;TC=30;TCF=2;TCR=28;TR=17;WE=78120854;WS=78120836;set=Platypus	GT:AD:AF:DP	0/1:13,17:0.57:30
chr17	78155182	rs9906472	A	C	1244.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:56,52:0.48:108
chr17	78157560	.	TGCCCACATGCTCACCC	T	3009.73	.	AC=2;AF=1.00;AN=2;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr17	78157995	rs4889990	G	A	5263.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr17	78158063	rs4889991	G	A	2450.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr17	78166385	rs11658460	C	T	8918.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:2,335:0.99:337
chr17	78171944	rs2066964	G	C	3358.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:1,125:0.99:126
chr17	78175483	rs2304856	T	C	11709.77	.	AC=2;AF=1.00;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	1/1:0,432:1.00:432
chr17	78175854	rs3813063	C	A	2663.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:1,97:0.99:98
chr17	78176233	rs8069255	T	A	5688.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr17	78178170	rs4889996	A	G	4916.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:2,118:0.98:120
chr17	78178182	rs4889836	T	C	4532.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.432;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=2.708;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=43.58;ReadPosRankSum=2.475;SOR=1.728;set=HC	GT:AD:AF:DP	1/1:2,102:0.98:104
chr17	78178189	rs4889997	G	A	4221.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=48.53;SOR=1.927;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr17	78178830	rs11653893	A	G	1190.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr17	78178893	rs11652075	C	T	3649.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr17	78180618	rs4889998	A	C	6205.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr17	78188963	rs4889839	G	A	9565.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	1/1:0,358:1.00:358
chr17	78189009	rs4889840	C	T	5326.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr17	78199777	rs11150850	G	A	4164.77	.	AC=1;AF=0.500;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	0/1:228,214:0.48:442
chr17	78201554	rs6565652	T	C	1186.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:46,56:0.55:102
chr17	78201783	rs6565653	T	G	3579.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:153,173:0.53:326
chr17	78210944	rs8070283	G	A	1462.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:63,64:0.50:127
chr17	78219065	rs7406843	C	A	6973.77	.	AC=1;AF=0.500;AN=2;DB;DP=757;set=Intersection	GT:AD:AF:DP	0/1:410,340:0.45:750
chr17	78219100	rs7406844	C	T	5704.77	.	AC=1;AF=0.500;AN=2;DB;DP=572;set=Intersection	GT:AD:AF:DP	0/1:298,273:0.48:571
chr17	78221850	rs12941437	A	G	671.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:15,23:0.61:38
chr17	78222280	rs7209848	A	G	956.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:47,47:0.50:94
chr17	78222565	rs7214131	A	G	1361.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:191,82:0.30:273
chr17	78222638	rs34911974	GC	G	1121.73	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:87,40:0.31:127
chr17	78222661	rs9904116	C	T	630.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:62,31:0.33:93
chr17	78223103	rs8064518	C	A	883.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:46,45:0.49:91
chr17	78272294	rs72849841	C	T	3480.77	.	AC=1;AF=0.500;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	0/1:201,170:0.46:371
chr17	78281088	rs61087724	G	T	920.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:44,44:0.50:88
chr17	78298926	rs61359568	G	A	2192.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:123,111:0.47:234
chr17	78298938	rs6565674	A	G	5437.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr17	78302157	rs8082521	C	A	2344.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:184,122:0.40:306
chr17	78305871	rs10782008	G	A	3730.77	.	AC=1;AF=0.500;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	0/1:203,189:0.48:392
chr17	78306280	rs8074015	A	G	3896.77	.	AC=1;AF=0.500;AN=2;DB;DP=444;set=Intersection	GT:AD:AF:DP	0/1:260,179:0.41:439
chr17	78306308	rs9908287	C	G	2783.77	.	AC=1;AF=0.500;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	0/1:197,134:0.40:331
chr17	78308124	rs79268626	G	A	734.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:26,30:0.54:56
chr17	78308136	rs11658902	G	A	576.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:21,23:0.52:44
chr17	78311508	rs4890009	G	A	5062.77	.	AC=1;AF=0.500;AN=2;DB;DP=532;set=Intersection	GT:AD:AF:DP	0/1:288,235:0.45:523
chr17	78319136	rs9674961	G	A	4910.77	.	AC=1;AF=0.500;AN=2;DB;DP=525;MQ=60.02;set=Intersection	GT:AD:AF:DP	0/1:281,237:0.46:518
chr17	78319380	rs4890012	G	C	4053.77	.	AC=1;AF=0.500;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	0/1:198,196:0.50:394
chr17	78323757	rs7223115	T	C	898.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:28,41:0.59:69
chr17	78324352	rs11654408	G	A	879.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:36,39:0.52:75
chr17	78325464	rs148590969	CT	C	733.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.728;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=2.247;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.247;QD=5.20;ReadPosRankSum=-1.020;SOR=0.911;set=HC	GT:AD:AF:DP	0/1:85,56:0.40:141
chr17	78327358	rs7216493	G	A	3268.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:119,148:0.55:267
chr17	78332396	rs9915562	A	G	996.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:50,46:0.48:96
chr17	78333840	rs8067292	T	C	3245.77	.	AC=1;AF=0.500;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	0/1:202,160:0.44:362
chr17	78335610	rs61741791	G	A	2028.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:91,96:0.51:187
chr17	78337058	rs35332090	G	C	3698.77	.	AC=1;AF=0.500;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	0/1:172,177:0.51:349
chr17	78337584	rs61740658	A	G	1960.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:79,91:0.54:170
chr17	78345567	rs111992928	T	TAC	2023.73	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:101,73:0.42:174
chr17	78345590	rs74789968	C	T	3561.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:107,111:0.51:218
chr17	78346548	rs4889847	G	A	648.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:28,28:0.50:56
chr17	78346830	rs116948489	G	A	4225.77	.	AC=1;AF=0.500;AN=2;DB;DP=448;set=Intersection	GT:AD:AF:DP	0/1:240,206:0.46:446
chr17	78348494	rs6565681	A	G	1792.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr17	78350088	rs113236556	T	C	4760.77	.	AC=1;AF=0.500;AN=2;DB;DP=521;set=Intersection	GT:AD:AF:DP	0/1:284,227:0.44:511
chr17	78350783	rs112535386	T	C	706.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:45,37:0.45:82
chr17	78354661	rs4889848	C	T	15698.77	.	AC=2;AF=1.00;AN=2;DB;DP=596;set=Intersection	GT:AD:AF:DP	1/1:0,591:1.00:591
chr17	78359988	rs112876212	C	T	2366.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:79,105:0.57:184
chr17	78360001	rs4890018	T	C	2111.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:113,98:0.46:211
chr17	78362231	rs75595842	G	A	256.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:11,12:0.52:23
chr17	78362300	rs6565683	A	T	1853.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr17	78363847	rs3185057	G	A	2418.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:123,113:0.48:236
chr17	78389516	rs371430381	C	T	2008.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:107,98:0.48:205
chr17	78396091	rs9907097	C	G	1788.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:84,83:0.50:167
chr17	78399208	rs41299838	G	A	2889.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:171,149:0.47:320
chr17	78401588	rs8065290	G	T	6345.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr17	78403801	rs41301876	G	A	6147.77	.	AC=1;AF=0.500;AN=2;DB;DP=574;set=Intersection	GT:AD:AF:DP	0/1:284,284:0.50:568
chr17	78403906	rs41301878	C	G	2406.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:89,107:0.55:196
chr17	78404175	rs113730607	ATTTG	A	3913.73	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:128,106:0.45:234
chr17	78444658	rs12943620	T	G	2508.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr17	78444679	rs28364735	T	C	3107.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr17	78445702	rs1131609	A	G	6267.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr17	78599655	rs901065	G	T	314.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:27,16:0.37:43
chr17	78617439	rs6565469	T	C	979.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:34,42:0.55:76
chr17	78681590	rs2306690	A	G	1345.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:50,63:0.56:113
chr17	78704240	rs12946115	A	C	1530.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:61,72:0.54:133
chr17	78727734	rs12944923	T	C	3197.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:130,138:0.51:268
chr17	78765219	rs4969429	A	G	6278.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr17	78795868	rs9911574	A	G	2323.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:139,114:0.45:253
chr17	78820167	rs111846362	C	T	1988.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:92,88:0.49:180
chr17	78820212	rs3829572	G	A	3337.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:172,156:0.48:328
chr17	78820329	rs3751945	C	T	4553.77	.	AC=1;AF=0.500;AN=2;DB;DP=574;set=Intersection	GT:AD:AF:DP	0/1:333,235:0.41:568
chr17	78820374	rs2589156	G	A	5626.77	.	AC=1;AF=0.500;AN=2;DB;DP=472;set=Intersection	GT:AD:AF:DP	0/1:204,265:0.57:469
chr17	78854056	rs6420478	A	G	3645.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr17	78854223	rs2289759	A	G	6258.77	.	AC=1;AF=0.500;AN=2;DB;DP=630;set=Intersection	GT:AD:AF:DP	0/1:319,304:0.49:623
chr17	78854316	rs2289760	C	T	2994.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:154,144:0.48:298
chr17	78857376	rs140548384	CAG	C	1909.73	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:44,53:0.55:97
chr17	78859004	rs2016817	C	T	1241.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:53,51:0.49:104
chr17	78865546	rs2289764	T	C	2145.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:142,108:0.43:250
chr17	78882806	rs1468029	G	A	542.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:20,23:0.53:43
chr17	78896488	rs2271602	C	T	17425.77	.	AC=1;AF=0.500;AN=2;DB;DP=1753;set=Intersection	GT:AD:AF:DP	0/1:900,840:0.48:1740
chr17	78897146	rs2271607	T	C	1882.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:100,90:0.47:190
chr17	78897561	rs6565491	C	T	5640.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr17	78914245	rs17848659	G	T	1259.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:122,66:0.35:188
chr17	78919324	rs28403145	G	A	1313.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:26,33:0.56:59
chr17	78919327	rs68078977	GCTTGCAGTGAGC	G	1290.73	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:38,35:0.48:73
chr17	78919349	rs8080910	A	G	2885.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr17	78919387	rs17848707	G	A	1859.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:86,84:0.49:170
chr17	78919558	rs1567962	C	T	2723.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:134,132:0.50:266
chr17	78920945	rs146791340	G	A	1035.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:48,50:0.51:98
chr17	78923178	rs3751940	C	T	3370.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:155,157:0.50:312
chr17	78935197	rs9899178	C	T	2045.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:81,98:0.55:179
chr17	78937925	rs3751938	C	T	1049.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr17	78938011	rs3751937	C	A	1089.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:86,72:0.46:158
chr17	78938204	rs3751936	G	C	3472.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:152,159:0.51:311
chr17	78968524	rs56236825	C	T	1171.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:79,57:0.42:136
chr17	78969386	rs4969333	G	C	875.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:46,41:0.47:87
chr17	78969590	rs66738175	T	C	1192.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:82,63:0.43:145
chr17	78970779	rs12951796	G	C	1429.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:91,74:0.45:165
chr17	78970909	rs4969334	A	G	1482.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:61,66:0.52:127
chr17	78971150	.	C	CCCCCAGGACTGAGCACAGTCACTCAGGCAGTGGGA	8024.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.149;ClippingRankSum=0.000;DP=451;ExcessHet=3.0103;FS=1.165;MLEAC=1;MLEAF=0.500;MQ=62.46;MQRankSum=15.987;QD=18.93;ReadPosRankSum=-0.430;SOR=0.806;set=HC	GT:AD:AF:DP	0/1:277,147:0.35:424
chr17	78971156	rs60323363	G	A	6740.77	.	AC=1;AF=0.500;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	0/1:278,177:0.39:455
chr17	78971182	rs9989472	C	T	6018.77	.	AC=1;AF=0.500;AN=2;DB;DP=453;set=Intersection	GT:AD:AF:DP	0/1:271,179:0.40:450
chr17	78972326	rs10871491	A	G	1935.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:1,71:0.99:72
chr17	78972864	rs11870458	T	C	5851.77	.	AC=1;AF=0.500;AN=2;DB;DP=610;set=Intersection	GT:AD:AF:DP	0/1:324,282:0.47:606
chr17	79004893	rs11548824	G	A	20717.77	.	AC=2;AF=1.00;AN=2;DB;DP=780;set=Intersection	GT:AD:AF:DP	1/1:5,771:0.99:776
chr17	79006850	rs11870986	T	C	20868.77	.	AC=2;AF=1.00;AN=2;DB;DP=777;set=Intersection	GT:AD:AF:DP	1/1:1,772:1.00:773
chr17	79006900	rs141210094	G	A	6164.77	.	AC=1;AF=0.500;AN=2;DB;DP=575;set=Intersection	GT:AD:AF:DP	0/1:279,291:0.51:570
chr17	79007075	rs11150764	C	A	5692.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr17	79009153	rs8073224	T	C	5638.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.41;SOR=0.996;set=HC	GT:AD:AF:DP	1/1:0,231:1.00:231
chr17	79010519	rs113714895	C	T	1155.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:50,52:0.51:102
chr17	79010533	rs4969350	G	A	3679.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr17	79010839	rs6565527	A	C	889.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr17	79031612	rs45566238	C	T	2309.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:147,114:0.44:261
chr17	79031787	rs111933912	C	G	334.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.838;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.14;ReadPosRankSum=-0.739;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:13,20:0.61:33
chr17	79031825	rs9898347	G	A	212.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:20,11:0.35:31
chr17	79059230	rs8080815	C	T	5329.77	.	AC=1;AF=0.500;AN=2;DB;DP=609;set=Intersection	GT:AD:AF:DP	0/1:334,272:0.45:606
chr17	79060474	rs41292398	C	G	556.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:14,22:0.61:36
chr17	79072011	rs72634327	A	G	3550.77	.	AC=1;AF=0.500;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	0/1:226,176:0.44:402
chr17	79077573	rs143001141	CTTG	C	548.73	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:34,17:0.33:51
chr17	79077957	rs34057293	T	C	7758.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr17	79077980	rs57792378	A	C	5800.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr17	79078610	rs72854146	A	G	779.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:30,36:0.55:66
chr17	79082081	rs7502590	A	G	1278.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:48,60:0.56:108
chr17	79082862	rs11664	G	A	5081.77	.	AC=1;AF=0.500;AN=2;DB;DP=531;set=Intersection	GT:AD:AF:DP	0/1:272,257:0.49:529
chr17	79084574	rs56084168	C	T	2366.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:76,98:0.56:174
chr17	79089428	rs12450670	A	C	2639.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr17	79089590	rs4969391	A	G	2700.77	.	AC=1;AF=0.500;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	0/1:258,152:0.37:410
chr17	79090198	rs62073016	C	T	999.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:43,44:0.51:87
chr17	79093142	rs144250320	C	CCGCGTGCCCTACCTCT	1909.73	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:96,44:0.31:140
chr17	79093427	rs62073018	C	T	769.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:17,31:0.65:48
chr17	79093822	rs36000545	A	G	1318.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:86,66:0.43:152
chr17	79095144	rs8073904	G	A	2693.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:143,128:0.47:271
chr17	79095629	rs7503604	C	A	5616.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr17	79098838	rs141491493	GGCAGGGTGA	G	4078.73	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr17	79102193	rs66762502	TAGG	T	370.73	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:18,11:0.38:29
chr17	79105850	rs4969253	T	C	3690.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr17	79106575	rs11650662	C	T	3175.77	.	AC=1;AF=0.500;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	0/1:198,161:0.45:359
chr17	79108141	rs4969397	A	G	22115.77	.	AC=2;AF=1.00;AN=2;DB;DP=813;set=Intersection	GT:AD:AF:DP	1/1:2,806:1.00:808
chr17	79108318	rs11658145	T	C	2971.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:150,145:0.49:295
chr17	79108344	rs55660414	C	T	2308.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:92,100:0.52:192
chr17	79139473	rs2659034	C	G	7813.77	.	AC=1;AF=0.500;AN=2;DB;DP=728;set=Intersection	GT:AD:AF:DP	0/1:330,375:0.53:705
chr17	79140505	rs12946891	C	G	2669.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr17	79155116	rs906180	A	G	16538.77	.	AC=2;AF=1.00;AN=2;DB;DP=623;set=Intersection	GT:AD:AF:DP	1/1:0,612:1.00:612
chr17	79163649	rs2292182	G	A	3186.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:148,153:0.51:301
chr17	79165171	rs869370	G	A	13008.77	.	AC=2;AF=1.00;AN=2;DB;DP=468;set=Intersection	GT:AD:AF:DP	1/1:0,461:1.00:461
chr17	79171967	rs2659016	A	G	3620.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr17	79173184	rs2659015	T	C	5646.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr17	79173224	rs2725419	T	C	7660.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr17	79173398	rs906176	A	G	3314.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr17	79173462	rs906175	C	T	3653.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr17	79174221	rs2466773	T	C	3635.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr17	79180775	rs2256881	A	G	8420.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr17	79182667	rs9896314	A	G	1243.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr17	79182778	rs62075318	T	C	5563.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr17	79202956	rs2048057	T	C	12940.77	.	AC=2;AF=1.00;AN=2;DB;DP=518;set=Intersection	GT:AD:AF:DP	1/1:4,495:0.99:499
chr17	79213305	rs2659009	G	A	709.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr17	79213562	rs2255166	T	C	5485.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:2,204:0.99:206
chr17	79219500	rs10569617	AATG	A	8029.73	.	AC=2;AF=1.00;AN=2;DB;DP=314;MQ=60.07;set=Intersection	GT:AD:AF:DP	1/1:2,296:0.99:298
chr17	79220224	rs2725405	G	C	6586.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr17	79372928	.	A	AGTGT	309.73	.	AC=1;AF=0.500;AN=2;DP=104;set=Intersection	GT:AD:AF:DP	0/1:64,24:0.27:88
chr17	79372952	rs112097074	T	C	1098.73	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:63,58:0.48:121
chr17	79373203	rs182760976	C	A	3447.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:112,151:0.57:263
chr17	79374471	.	C	A	349.77	.	AC=1;AF=0.500;AN=2;DP=44;set=Intersection	GT:AD:AF:DP	0/1:24,19:0.44:43
chr17	79385274	.	C	CCCTGCCTG	462.73	.	AC=1;AF=0.500;AN=2;DP=44;set=Intersection	GT:AD:AF:DP	0/1:7,9:0.56:16
chr17	79385314	.	G	GCCTGCCTGCCTTCCTTCCTT	1498.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.424;ClippingRankSum=0.000;DP=102;ExcessHet=3.0103;FS=3.253;MLEAC=1;MLEAF=0.500;MQ=60.37;MQRankSum=-0.847;QD=17.43;ReadPosRankSum=2.635;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:45,41:0.48:86
chr17	79389251	rs9897258	C	T	7696.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr17	79389486	rs11870740	G	A	1172.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr17	79390260	rs151241907	G	GGT,GGTGT	4004.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=162;set=Intersection	GT:AF:DP	1/2:0.23,0.73:109
chr17	79390277	.	G	A	1905	.	AC=1;AF=0.500;AN=2;BRF=0.51;FR=0.5000;HP=2;HapScore=2;MGOF=59;MMLQ=25;MQ=57.78;NF=69;NR=18;PP=1905;QD=22.2962208339;SC=GTGTGTGTGTGTGTCCATGAG;SbPval=0.99;Source=Platypus;TC=198;TCF=118;TCR=80;TR=87;WE=79390285;WS=79390244;set=Platypus	GT:AD:AF:DP	1/0:111,87:0.44:198
chr17	79390298	.	T	TGCGTGTGCGCGTGTGTGTCCATGAAAATGGGTGTGTGCATGTGTATGTCCATGAGGATGGGTGTGTGC,TGC	4824.73	.	AC=2,0;AF=1.00,0.00;AN=2;DP=181;set=Intersection	GT:AF:DP	1/1:1.00:90
chr17	79390339	.	GTT	G	2962	.	AC=1;AF=0.500;AN=2;BRF=0.53;FR=0.5000;HP=4;HapScore=1;MGOF=57;MMLQ=24;MQ=59.37;NF=86;NR=110;PP=2962;QD=20;SC=GTGTGTGCGTGTTTGTGTGTA;SbPval=0.49;Source=Platypus;TC=198;TCF=86;TCR=112;TR=196;WE=79390357;WS=79390313;set=Platypus	GT:AD:AF:DP	1/0:2,196:0.99:198
chr17	79390370	rs36169187	CGT	C	18427.73	.	AC=2;AF=1.00;AN=2;DB;DP=521;set=Intersection	GT:AD:AF:DP	1/1:0,491:1.00:491
chr17	79395814	rs34098647	A	AT	2936.73	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:30,160:0.84:190
chr17	79402514	rs12600846	C	T	5309.77	.	AC=1;AF=0.500;AN=2;DB;DP=493;set=Intersection	GT:AD:AF:DP	0/1:233,257:0.52:490
chr17	79409189	rs12952981	G	A	5378.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr17	79409309	rs12938890	A	G	4882.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr17	79409434	rs12939225	A	G	5274.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr17	79409710	rs12943867	G	A	20124.77	.	AC=2;AF=1.00;AN=2;DB;DP=719;set=Intersection	GT:AD:AF:DP	1/1:0,710:1.00:710
chr17	79411662	rs11655860	G	A	7687.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr17	79413954	rs72853266	C	T	9178.77	.	AC=1;AF=0.500;AN=2;DB;DP=938;set=Intersection	GT:AD:AF:DP	0/1:468,457:0.49:925
chr17	79414307	rs7213444	A	G	19244.77	.	AC=2;AF=1.00;AN=2;DB;DP=682;set=Intersection	GT:AD:AF:DP	1/1:0,676:1.00:676
chr17	79414897	rs11650750	C	A	2191.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:95,100:0.51:195
chr17	79414914	rs10871497	A	G	4076.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr17	79418260	rs6565571	A	G	6534.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr17	79418599	rs28576195	C	T	2017.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:99,100:0.50:199
chr17	79419025	rs35572189	G	A	2739.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:133,140:0.51:273
chr17	79419158	rs374505812	C	G	144.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:13,8:0.38:21
chr17	79419159	rs142997686	TGGGAGGGTCGCAGCACCCCCACCCCC	T	390.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:12,11:0.48:23
chr17	79422252	rs1478610	G	A	808.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:57,40:0.41:97
chr17	79422289	rs1842041	C	T	1313.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:117,68:0.37:185
chr17	79424516	rs12601317	A	G	8636.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr17	79424537	rs34224936	C	T	2010.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:88,93:0.51:181
chr17	79426021	rs34202212	GC	G	6638.73	.	AC=1;AF=0.500;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	0/1:161,208:0.56:369
chr17	79426416	rs4969272	A	G	3104.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:106,125:0.54:231
chr17	79426481	rs4969273	A	G	6528.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:1,233:1.00:234
chr17	79427822	rs3744148	C	T	3547.73	.	AC=1;AF=0.500;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	0/1:169,154:0.48:323
chr17	79429711	rs3736072	C	T	2963.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:126,141:0.53:267
chr17	79477898	rs375712138	GC	G	5273.73	.	AC=1;AF=0.500;AN=2;DB;DP=439;set=Intersection	GT:AD:AF:DP	0/1:220,208:0.49:428
chr17	79478007	rs1135989	G	A	2611.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:127,115:0.48:242
chr17	79478019	rs1139405	G	A	6778.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:1,231:1.00:232
chr17	79478870	rs9912403	CC	AT	4381.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;JOINED;set=Intersection	GT:AD:AF:DP	0/1:136,116:0.46:252
chr17	79478872	rs75355043	G	A	3036.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:124,142:0.53:266
chr17	79478916	rs9910792	G	T	2649.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:150,129:0.46:279
chr17	79479469	rs8064532	A	C	7925.77	.	AC=1;AF=0.500;AN=2;DB;DP=728;set=Intersection	GT:AD:AF:DP	0/1:358,361:0.50:719
chr17	79495519	rs2075720	C	T	7450.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr17	79495613	rs201652340	A	T	7677.77	.	AC=1;AF=0.500;AN=2;DB;DP=812;set=Intersection	GT:AD:AF:DP	0/1:433,374:0.46:807
chr17	79502316	rs138055235	A	C	1375.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr17	79508263	rs62076028	A	G	2403.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr17	79508400	rs14422	T	C	5923.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr17	79508484	rs58483803	G	A	5007.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:2,185:0.99:187
chr17	79508506	rs2228698	G	T	4041.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:2,151:0.99:153
chr17	79510899	rs7406506	A	G	3889.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr17	79511135	rs8077430	A	G	9989.77	.	AC=2;AF=1.00;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	1/1:0,370:1.00:370
chr17	79514129	rs11552304	G	A	11907.77	.	AC=2;AF=1.00;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	1/1:0,430:1.00:430
chr17	79514832	rs7224579	G	A	16515.77	.	AC=2;AF=1.00;AN=2;DB;DP=618;set=Intersection	GT:AD:AF:DP	1/1:0,609:1.00:609
chr17	79515075	rs6565593	A	G	3647.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr17	79519382	rs4076968	G	A	6486.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr17	79526569	rs4076819	C	G	557.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:15,23:0.61:38
chr17	79530993	rs8070929	G	T	3432.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr17	79567353	rs7208474	G	A	799.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:23,37:0.62:60
chr17	79567610	rs7213849	C	T	1524.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr17	79573860	rs10695650	C	CTTAA	5775.73	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr17	79577127	rs8077038	T	G	2830.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr17	79612541	rs34896443	G	A	7727.77	.	AC=1;AF=0.500;AN=2;DB;DP=884;set=Intersection	GT:AD:AF:DP	0/1:488,385:0.44:873
chr17	79615225	rs7406494	G	T	607.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr17	79637349	rs10438817	T	C	11289.77	.	AC=2;AF=1.00;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	1/1:0,429:1.00:429
chr17	79766825	rs7406228	C	A	1550.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:79,72:0.48:151
chr17	79767019	rs200551811	TCTGTCTGC	T	5367.73	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:145,153:0.51:298
chr17	79767530	rs370243345	CCTGT	C	4042.73	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:126,111:0.47:237
chr17	79767602	.	T	TCTGTCTGCCTGC	3440.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.139;ClippingRankSum=0.000;DP=380;ExcessHet=3.0103;FS=1.337;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.59;ReadPosRankSum=-0.686;SOR=0.611;set=HC	GT:AD:AF:DP	0/1:185,140:0.43:325
chr17	79768848	rs2272030	A	G	1832.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.391;ClippingRankSum=0.000;DB;DP=266;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.30;ReadPosRankSum=-0.853;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:152,99:0.39:251
chr17	79769169	rs5386	C	G	2268.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:135,109:0.45:244
chr17	79769466	rs28454947	T	C	3818.77	.	AC=1;AF=0.500;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	0/1:169,180:0.52:349
chr17	79770740	rs5384	C	T	4285.77	.	AC=1;AF=0.500;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	0/1:226,201:0.47:427
chr17	79784101	rs374374934	GCA	G	743.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.172;ClippingRankSum=0.000;DB;DP=528;ExcessHet=3.0103;FS=3.833;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=3.498;QD=1.62;ReadPosRankSum=-0.183;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:386,72:0.16:458
chr17	79816926	rs1533756	C	T	396.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:19,18:0.49:37
chr17	79862882	rs146889521	C	G	13180.77	.	AC=2;AF=1.00;AN=2;DB;DP=492;set=Intersection	GT:AD:AF:DP	1/1:0,474:1.00:474
chr17	79866573	.	A	G	6035.77	.	AC=1;AF=0.500;AN=2;DP=536;set=Intersection	GT:AD:AF:DP	0/1:248,285:0.53:533
chr17	79866610	rs111282936	G	A	3884.77	.	AC=1;AF=0.500;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	0/1:246,187:0.43:433
chr17	79869091	.	G	T	4286.77	.	AC=1;AF=0.500;AN=2;DP=406;set=Intersection	GT:AD:AF:DP	0/1:190,210:0.53:400
chr17	79872129	rs1879568	A	G	23950.77	.	AC=2;AF=1.00;AN=2;DB;DP=911;set=Intersection	GT:AD:AF:DP	1/1:0,902:1.00:902
chr17	79872241	rs1879569	A	G	25324.77	.	AC=2;AF=1.00;AN=2;DB;DP=897;set=Intersection	GT:AD:AF:DP	1/1:0,887:1.00:887
chr17	79881138	.	A	AC	58.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.645;ClippingRankSum=-0.000;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.92;ReadPosRankSum=-0.001;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:9,6:0.40:15
chr17	79891147	rs61747618	T	C	9164.77	.	AC=2;AF=1.00;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	1/1:0,342:1.00:342
chr17	79893962	rs34419046	G	A	19158.77	.	AC=2;AF=1.00;AN=2;DB;DP=737;set=Intersection	GT:AD:AF:DP	1/1:0,714:1.00:714
chr17	79894106	.	AT	A	349.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.299;ClippingRankSum=0.000;DP=447;ExcessHet=3.0103;FS=3.439;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=3.033;QD=1.06;ReadPosRankSum=0.855;SOR=0.463;set=HC	GT:AD:AF:DP	0/1:258,71:0.22:329
chr17	79898644	rs2293098	G	A	2632.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:119,119:0.50:238
chr17	79898933	rs62077244	G	A	6583.77	.	AC=1;AF=0.500;AN=2;DB;DP=647;set=Intersection	GT:AD:AF:DP	0/1:326,312:0.49:638
chr17	79899272	rs4796856	A	G	4831.77	.	AC=1;AF=0.500;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	0/1:207,206:0.50:413
chr17	79899495	rs4796854	G	A	5022.77	.	AC=1;AF=0.500;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	0/1:182,220:0.55:402
chr17	79899698	rs4796852	G	A	580.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:20,23:0.53:43
chr17	79912164	rs79066457	G	A	3298.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:134,143:0.52:277
chr17	79914360	rs113956329	G	A	454.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:34,22:0.39:56
chr17	79915629	rs36023555	A	G	595.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:41,31:0.43:72
chr17	79915907	rs74002707	G	A	1554.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:77,70:0.48:147
chr17	79935636	rs9906594	C	G	619.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.535;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.40;ReadPosRankSum=-0.471;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:21,29:0.58:50
chr17	79941356	.	G	GGGATGGCGGGGCGT	2265.73	.	AC=1;AF=0.500;AN=2;DP=139;set=Intersection	GT:AD:AF:DP	0/1:76,53:0.41:129
chr17	79943269	rs56325683	C	A	1972.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:86,94:0.52:180
chr17	79967461	.	G	GGGGGCGACTGAGGCACAGCTCTGACGGGGCCCCCCTGAGGTCTACGGATGGGACGTA	1293.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.708;ClippingRankSum=0.000;DP=131;ExcessHet=3.0103;FS=4.332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.22;ReadPosRankSum=-0.691;SOR=1.204;set=HC	GT:AD:AF:DP	0/1:50,35:0.41:85
chr17	79967486	.	G	C	1174	.	AC=1;AF=0.500;AN=2;BRF=0.24;FR=0.5000;HP=4;HapScore=1;MGOF=12;MMLQ=24;MQ=60.0;NF=10;NR=18;PP=1174;QD=43.1704004481;SC=ACAGCTCTGAGGGGGCCCCCC;SbPval=0.42;Source=Platypus;TC=88;TCF=28;TCR=60;TR=28;WE=79967524;WS=79967476;set=Platypus	GT:AD:AF:DP	1/0:60,28:0.32:88
chr17	79967496	.	CG	C	2081	.	AC=1;AF=0.500;AN=2;BRF=0.24;FR=0.5000;HP=5;HapScore=1;MGOF=12;MMLQ=27;MQ=60.0;NF=1;NR=14;PP=2081;QD=140.4;SC=GGGGGCCCCCCGTGAGGTCTG;SbPval=0.79;Source=Platypus;TC=59;TCF=6;TCR=53;TR=15;WE=79967524;WS=79967476;set=Platypus	GT:AD:AF:DP	1/0:44,15:0.25:59
chr17	79967904	rs143947080	G	C	442.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.062;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=1.093;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.04;ReadPosRankSum=1.364;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:24,25:0.51:49
chr17	79967963	.	G	GT	279.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.827;ClippingRankSum=0.000;DP=56;ExcessHet=3.0103;FS=2.874;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.95;ReadPosRankSum=-0.817;SOR=0.987;set=HC	GT:AD:AF:DP	0/1:18,29:0.62:47
chr17	79974731	rs13087	T	C	2590.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:146,130:0.47:276
chr17	79977813	rs4969471	C	G	1596.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:99,84:0.46:183
chr17	79980891	rs4444402	C	T	990.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:42,43:0.51:85
chr17	79984967	rs4969468	G	A	3695.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:117,157:0.57:274
chr17	79986818	rs4969467	G	A	1841.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:80,87:0.52:167
chr17	79990481	rs4969477	G	A	1530.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:65,62:0.49:127
chr17	79990972	rs10708637	CG	C	3290.73	.	AC=2;AF=1.00;AN=2;DB;DP=101;MQ=60.43;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr17	79991603	rs4969478	C	T	8015.77	.	AC=1;AF=0.500;AN=2;DB;DP=718;set=Intersection	GT:AD:AF:DP	0/1:334,381:0.53:715
chr17	80008676	rs4464142	A	C	9936.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	1/1:1,350:1.00:351
chr17	80013235	rs4969464	A	G	1343.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:78,60:0.43:138
chr17	80050554	rs10591316	CGG	C,CG	1164.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.485;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=24.27;ReadPosRankSum=-0.293;SOR=4.615;set=HC	GT:AD:AF:DP	1/2:3,30,15:0.62,0.31:48
chr17	80091941	rs4789754	G	A	3069.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr17	80092131	rs4789753	T	C	6098.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr17	80092171	rs4789752	A	G	3734.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr17	80103737	rs6502066	T	C	13235.77	.	AC=2;AF=1.00;AN=2;DB;DP=504;set=Intersection	GT:AD:AF:DP	1/1:0,498:1.00:498
chr17	80104593	rs12600852	G	A	7611.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:1,290:1.00:291
chr17	80104631	rs12603050	A	G	6813.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr17	80104762	rs12602320	C	T	5030.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.75;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,115:1.00:115
chr17	80104762	.	CGT	TGC	1681	.	AC=2;AF=1.00;AN=2;BRF=0.35;FR=1.0000;HP=3;HapScore=1;MGOF=8;MMLQ=24;MQ=60.0;NF=32;NR=53;PP=1681;QD=20.4055044101;SC=CGCAAACAAACGTGTGTGCAC;SbPval=0.46;Source=Platypus;TC=91;TCF=33;TCR=58;TR=85;WE=80104772;WS=80104752;set=Platypus	GT:AD:AF:DP	1/1:6,85:0.93:91
chr17	80104764	rs12603584	T	C	5030.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.73;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,110:1.00:110
chr17	80121275	rs34448080	A	G	15856.77	.	AC=2;AF=1.00;AN=2;DB;DP=589;set=Intersection	GT:AD:AF:DP	1/1:2,585:1.00:587
chr17	80121358	rs34867501	T	C	5097.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr17	80136418	rs7209474	C	T	15390.77	.	AC=2;AF=1.00;AN=2;DB;DP=583;set=Intersection	GT:AD:AF:DP	1/1:1,576:1.00:577
chr17	80137173	rs3935816	C	T	4099.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr17	80141892	.	TGC	T	695.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.747;ClippingRankSum=0.000;DP=316;ExcessHet=3.0103;FS=5.893;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.21;ReadPosRankSum=-1.694;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:32,25:0.44:57
chr17	80141905	rs59638220	G	A	477.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.538;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=21.278;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.24;ReadPosRankSum=2.046;SOR=2.611;set=HC	GT:AD:AF:DP	0/1:45,21:0.32:66
chr17	80141907	rs12953056	G	A	1312.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.155;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=9.754;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.75;ReadPosRankSum=0.887;SOR=1.546;set=HC	GT:AD:AF:DP	0/1:22,48:0.69:70
chr17	80145983	rs4789730	T	A	1233.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr17	80146089	rs4789729	G	A	4572.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr17	80146406	rs139890455	T	A	2031.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:71,81:0.53:152
chr17	80151501	rs56193110	A	G	1396.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr17	80151805	rs4789670	T	C	6327.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr17	80151881	rs4789722	G	A	6445.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:1,229:1.00:230
chr17	80159566	rs8072670	T	C	20356.77	.	AC=2;AF=1.00;AN=2;DB;DP=755;MQ=60.01;set=Intersection	GT:AD:AF:DP	1/1:0,742:1.00:742
chr17	80195582	rs9303026	T	C	14896.77	.	AC=2;AF=1.00;AN=2;DB;DP=537;set=Intersection	GT:AD:AF:DP	1/1:0,535:1.00:535
chr17	80198007	rs9901910	G	C	12332.77	.	AC=2;AF=1.00;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	1/1:0,451:1.00:451
chr17	80218800	rs35693344	G	A	816.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:43,35:0.45:78
chr17	80273407	rs4530194	G	C	2200.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:103,108:0.51:211
chr17	80275253	rs3176829	T	C	960.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:47,48:0.51:95
chr17	80280865	rs11077986	G	A	10454.77	.	AC=1;AF=0.500;AN=2;DB;DP=963;set=Intersection	GT:AD:AF:DP	0/1:458,493:0.52:951
chr17	80332251	rs11654140	T	C	5104.77	.	AC=1;AF=0.500;AN=2;DB;DP=581;set=Intersection	GT:AD:AF:DP	0/1:323,253:0.44:576
chr17	80352138	rs6502106	T	C	1241.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:57,55:0.49:112
chr17	80352234	rs62079522	G	A	4094.77	.	AC=1;AF=0.500;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	0/1:179,190:0.51:369
chr17	80352303	rs62079523	G	A	5581.77	.	AC=1;AF=0.500;AN=2;DB;DP=538;set=Intersection	GT:AD:AF:DP	0/1:264,267:0.50:531
chr17	80355975	rs62079527	C	T	1000.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:62,43:0.41:105
chr17	80356019	rs9905077	C	G	1828.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:127,94:0.43:221
chr17	80356315	rs6502107	A	G	452.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:46,23:0.33:69
chr17	80361753	rs11655676	G	A	824.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:30,38:0.56:68
chr17	80367206	rs62080965	G	A	630.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:48,33:0.41:81
chr17	80404326	rs11077994	G	T	1080.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:45,43:0.49:88
chr17	80430359	.	C	CA	424.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.946;ClippingRankSum=0.000;DP=180;ExcessHet=3.0103;FS=5.233;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.830;QD=2.97;ReadPosRankSum=-0.570;SOR=0.336;set=HC	GT:AD:AF:DP	0/1:99,44:0.31:143
chr17	80438165	rs367877086	GCA	G	63.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.890;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=3.951;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=2.249;QD=0.53;ReadPosRankSum=1.247;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:102,19:0.16:121
chr17	80439606	rs61126963	CA	C	220.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.115;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=0.928;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.55;ReadPosRankSum=1.139;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:101,41:0.29:142
chr17	80441195	.	C	CA	66.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.263;ClippingRankSum=0.000;DP=290;ExcessHet=3.0103;FS=2.117;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=0.000;QD=0.24;ReadPosRankSum=0.886;SOR=0.886;set=HC	GT:AD:AF:DP	0/1:230,43:0.16:273
chr17	80517489	rs72861098	G	C	759.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:35,35:0.50:70
chr17	80521092	rs4789795	A	G	2102.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr17	80521135	rs4789796	T	C	1191.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:59,49:0.45:108
chr17	80526139	rs2291395	A	G	321.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:24,17:0.41:41
chr17	80529495	rs3794723	G	A	1021.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:36,43:0.54:79
chr17	80529568	rs3794722	A	G	2564.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:124,118:0.49:242
chr17	80540585	rs2306759	A	G	1810.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:71,81:0.53:152
chr17	80545030	rs35974241	G	A	4689.77	.	AC=1;AF=0.500;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	0/1:198,223:0.53:421
chr17	80545156	rs6502124	A	G	3708.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr17	80574082	rs753569	T	G	688.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.291;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=1.610;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.31;ReadPosRankSum=0.000;SOR=0.406;set=HC	GT:AD:AF:DP	0/1:43,31:0.42:74
chr17	80574532	rs12950772	A	G	3246.77	.	AC=1;AF=0.500;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	0/1:187,167:0.47:354
chr17	80577126	rs59969975	ATCT	A	358.73	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:8,10:0.56:18
chr17	80583230	rs3826309	A	G	7401.77	.	AC=1;AF=0.500;AN=2;DB;DP=759;set=Intersection	GT:AD:AF:DP	0/1:379,372:0.50:751
chr17	80585094	rs2291393	C	T	630.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:42,32:0.43:74
chr17	80601769	rs59318270	TA	T	4194.73	.	AC=1;AF=0.500;AN=2;DB;DP=299;MQ=60.04;set=Intersection	GT:AD:AF:DP	0/1:137,156:0.53:293
chr17	80602050	rs11649788	C	G	580.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:21,22:0.51:43
chr17	80617552	rs2279395	G	A	2342.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:146,116:0.44:262
chr17	80619080	rs4789706	T	C	763.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	80626055	rs72853027	C	T	2006.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:96,93:0.49:189
chr17	80626104	rs12952159	T	C	4474.77	.	AC=1;AF=0.500;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	0/1:202,223:0.52:425
chr17	80626210	rs7221877	T	C	11445.77	.	AC=2;AF=1.00;AN=2;DB;DP=472;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.16;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,455:1.00:455
chr17	80656616	rs2243606	T	G	1270.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr17	80674643	rs2250000	C	G	2981.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr17	80674839	rs10714010	CG	C	3295.73	.	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.11;QD=33.98;SOR=0.992;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr17	80676946	rs111661651	A	ACCACCCC	2201.73	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr17	80684638	rs2246103	T	C	5362.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr17	80685126	rs2243446	T	C	1885.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr17	80693705	rs2256322	A	G	2982.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.94;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,115:1.00:115
chr17	80693805	rs2256316	C	G	174.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:18,10:0.36:28
chr17	80696410	rs2253149	A	C	1797.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr17	80696542	rs2253132	G	A	4167.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.88;SOR=0.747;set=HC	GT:AD:AF:DP	1/1:0,113:1.00:113
chr17	80696542	.	GCACAT	ACACAA,ACACAT	580	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.39;FR=0.5000,0.5000;HP=2;HapScore=2;MGOF=4;MMLQ=25;MQ=60.0;NF=19,37;NR=21,41;PP=551,580;QD=15.1116968716;SC=ACCCATATGCGCACATGTGTA;SbPval=0.55;Source=Platypus;TC=78;TCF=37;TCR=41;TR=40,78;WE=80696555;WS=80696532;set=Platypus	GT:AF:DP	0/1:0.51:78
chr17	80696547	rs2253131	T	A	1304.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.435;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=0.715;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.75;ReadPosRankSum=0.509;SOR=0.572;set=HC	GT:AD:AF:DP	0/1:48,63:0.57:111
chr17	80699093	rs2252848	A	G	488.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:25,23:0.48:48
chr17	80700592	rs1994554	T	C	11483.77	.	AC=2;AF=1.00;AN=2;DB;DP=442;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.28;SOR=0.834;set=HC	GT:AD:AF:DP	1/1:0,437:1.00:437
chr17	80700712	rs1994553	T	C	6983.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr17	80706928	rs2243416	G	A	1419.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.083;ClippingRankSum=0.000;DB;DP=190;ExcessHet=3.0103;FS=1.153;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.59;ReadPosRankSum=-1.409;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:111,76:0.41:187
chr17	80708601	rs1056534	C	G	3255.77	.	AC=1;AF=0.500;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	0/1:189,155:0.45:344
chr17	80710278	rs2451217	G	C	167.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:2,7:0.78:9
chr17	80730527	rs615630	T	C	1098.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:50,53:0.51:103
chr17	80755615	rs36020328	C	CT	591.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.087;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.31;ReadPosRankSum=0.510;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:38,43:0.53:81
chr17	80763983	rs582192	C	T	1421.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:83,65:0.44:148
chr17	80765322	rs668990	C	A	1167.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:53,51:0.49:104
chr17	80786008	rs6502134	G	A	42620.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.989;ClippingRankSum=0.000;DB;DP=1725;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.10;ReadPosRankSum=-1.261;SOR=0.394;set=HC	GT:AD:AF:DP	1/1:1,1697:1.00:1698
chr17	80786261	rs138156874	T	TACAC	20267.73	.	AC=1;AF=0.500;AN=2;DB;DP=994;set=Intersection	GT:AD:AF:DP	0/1:447,506:0.53:953
chr17	80786427	rs11364632	GC	G	28123.73	.	AC=2;AF=1.00;AN=2;DB;DP=1065;set=Intersection	GT:AD:AF:DP	1/1:2,942:1.00:944
chr17	80786627	rs34655768	GCA	G	5323.73	.	AC=1;AF=0.500;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	0/1:159,168:0.51:327
chr17	80786641	rs7207932	C	T	3539.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:176,155:0.47:331
chr17	80788465	rs12938126	T	C	5744.77	.	AC=1;AF=0.500;AN=2;DB;DP=513;set=Intersection	GT:AD:AF:DP	0/1:238,272:0.53:510
chr17	80788492	rs12948179	A	G	5058.73	.	AC=1;AF=0.500;AN=2;DB;DP=483;set=Intersection	GT:AD:AF:DP	0/1:237,241:0.50:478
chr17	80789468	rs35653278	G	A	4689.77	.	AC=1;AF=0.500;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	0/1:195,219:0.53:414
chr17	80789628	rs8074277	T	C	4456.77	.	AC=1;AF=0.500;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	0/1:200,214:0.52:414
chr17	80790388	rs12450046	G	A	1344.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:40,56:0.58:96
chr17	80790442	rs3744165	T	G	1190.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr17	80827955	rs7222931	A	G	5502.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr17	80828057	rs3744161	G	A	18848.77	.	AC=2;AF=1.00;AN=2;DB;DP=731;MQ=59.99;set=Intersection	GT:AD:AF:DP	1/1:0,714:1.00:714
chr17	80858669	rs9891862	G	A	16245.77	.	AC=2;AF=1.00;AN=2;DB;DP=603;set=Intersection	GT:AD:AF:DP	1/1:0,597:1.00:597
chr17	80861206	rs2271918	A	G	7967.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chr17	80878303	rs143250235	AG	A	389.73	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:10,14:0.58:24
chr17	80878389	rs1471197	A	G	1580.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:1,60:0.98:61
chr17	80884125	rs2004708	A	G	1316.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.633;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.81;ReadPosRankSum=-0.640;SOR=0.930;set=HC	GT:AD:AF:DP	0/1:35,35:0.50:70
chr17	80884132	rs2004707	A	G	1353.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.332;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=1.307;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.81;ReadPosRankSum=0.288;SOR=1.009;set=HC	GT:AD:AF:DP	0/1:40,36:0.47:76
chr17	80895933	rs3785522	A	G	2478.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:105,108:0.51:213
chr17	80914743	rs56027815	G	A	3318.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:134,156:0.54:290
chr17	80923432	rs7217917	T	C	578.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:16,23:0.59:39
chr17	80923536	rs4986144	C	T	2908.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:131,134:0.51:265
chr17	80963331	rs9901757	C	T	1745.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:68,78:0.53:146
chr17	81009622	rs59686903	C	T	965.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:46,45:0.49:91
chr17	81009636	rs57923322	T	G	1018.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:52,52:0.50:104
chr17	81043039	rs9908756	A	G	10633.77	.	AC=2;AF=1.00;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	1/1:1,387:1.00:388
chr17	81050833	rs74775917	A	AG	15945.73	.	AC=2;AF=1.00;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	1/1:0,426:1.00:426
chr17	81050982	rs7501742	G	C	16830.77	.	AC=2;AF=1.00;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	1/1:0,421:1.00:421
chr17	81051007	rs7502442	G	T	14228.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr17	81051887	rs7223467	T	G	3461.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr17	81052423	rs8269	G	A	2829.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr17	81083419	rs28399067	G	A	476.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:56,29:0.34:85
chr18	120645	rs8096198	C	T	816.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr18	120683	rs11284195	TC	T	1714.73	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr18	196829	rs655781	G	A	1248.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr18	204804	.	G	C	820.77	.	AC=2;AF=1.00;AN=2;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.04;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr18	204815	rs56806027	T	A	761.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr18	204816	rs4039610	T	TAAAAA	752.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr18	224184	rs631343	C	G	2509.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr18	224268	rs117999376	T	C	654.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr18	225081	rs71352928	A	T	1923.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:2,74:0.97:76
chr18	252559	rs657138	G	A	3766.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr18	260109	rs77929570	A	T	75.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.09;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr18	319935	rs12190	T	C	446.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.91;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr18	334742	rs2305027	C	T	331.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr18	334758	rs2305026	T	C	331.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr18	334994	rs2305025	A	G	1308.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr18	357247	rs3810040	G	A	115.84	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:1,5:0.83:6
chr18	580623	rs61734344	T	C	4616.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr18	606993	rs62090069	G	T	316.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr18	607024	rs62090070	A	T	300.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr18	607068	rs62090071	T	C	408.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr18	607210	rs62090072	T	C	245.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr18	624783	rs495688	A	G	451.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr18	624824	rs495799	T	C	905.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr18	625070	rs498466	G	A	706.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr18	627044	.	C	T	600	.	AC=2;AF=1.00;AN=2;BRF=0.6;FR=1.0000;HP=1;HapScore=2;MGOF=27;MMLQ=28;MQ=56.72;NF=24;NR=0;PP=600;QD=26.4488005228;SC=AAGAAAGAGTCGAGAAAGAAA;SbPval=1.0;Source=Platypus;TC=24;TCF=24;TCR=0;TR=24;WE=627052;WS=627013;set=Platypus	GT:AD:AF:DP	1/1:0,24:1.00:24
chr18	645176	rs565034	C	A	1378.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr18	657685	.	G	C	351	.	AC=2;AF=1.00;AN=2;BRF=0.5;FR=1.0000;HP=2;HapScore=2;MGOF=9;MMLQ=24;MQ=60.0;NF=13;NR=0;PP=351;QD=29.6747086575;SC=CGCGCCACTTGGCCTGCCTCC;SbPval=1.0;Source=Platypus;TC=13;TCF=13;TCR=0;TR=13;WE=657693;WS=657675;set=Platypus	GT:AD:AF:DP	1/1:0,13:1.00:13
chr18	657785	rs188268314	C	T	1909.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr18	658170	rs28602966	G	T	6850.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:2,257:0.99:259
chr18	662103	rs1001761	G	A	390.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr18	662370	rs2612095	T	C	785.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr18	670890	.	A	T	927.77	.	AC=2;AF=1.00;AN=2;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr18	672836	rs1059393	A	G	1381.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr18	674535	rs2847172	T	C	1576.73	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=25.03;SOR=0.952;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr18	678847	rs2606246	T	C	1673.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr18	678947	rs2741186	A	G	239.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr18	724612	rs537141	A	G	2342.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr18	905125	rs1893154	A	G	1455.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr18	905537	rs2231183	T	C	1702.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr18	907675	rs8192597	G	A	3853.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr18	909561	rs2231187	A	G	875.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr18	2539016	rs8084295	C	G	4832.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.27;SOR=0.783;set=HC	GT:AD:AF:DP	1/1:0,184:1.00:184
chr18	2547500	rs2677879	G	T	2959.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:2,108:0.98:110
chr18	2585077	rs6506019	G	A	745.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr18	2610978	rs3817350	G	A	578.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr18	2616457	rs9051	G	C	323.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.91;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr18	2656248	rs2430853	G	C	1333.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr18	2688798	rs637651	G	A	160.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr18	2698125	rs626994	T	C	256.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr18	2705615	rs62084217	A	G	152.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr18	2705633	rs8090967	T	A	152.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.01;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr18	2705700	rs635132	A	G	605.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr18	2707619	rs2276092	G	A	1778.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.95;SOR=0.754;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr18	2718265	rs62084229	A	G	715.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr18	2728686	rs10502304	T	A	331.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr18	2729177	rs17627559	T	C	347.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr18	2738352	rs10638660	T	TAGAC	1267.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr18	2738580	rs8094260	C	T	3883.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr18	2740714	rs12327477	A	G	592.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr18	2750477	rs2304859	A	G	871.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr18	2751475	rs300293	A	G	964.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr18	2771516	rs300291	G	T	946.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr18	2771643	rs3214732	A	AT	372.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr18	2777923	rs3213926	A	G	1348.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr18	2778382	rs17552342	C	T	161.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr18	2784926	rs72866583	G	A	312.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr18	2795852	rs2298498	A	G	488.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr18	2847361	rs112881773	C	G	119.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr18	2847730	rs2289687	C	G	697.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr18	2909831	rs607411	C	G	3523.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr18	2946291	rs643507	C	T	3891.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr18	2951447	rs10570659	TA	T	71.86	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.534;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=8.98;ReadPosRankSum=-1.534;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:1,7:0.88:8
chr18	2954439	rs7226624	C	T	1491.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr18	2982817	rs1539792	C	A	740.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr18	3067278	rs2230164	A	G	772.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr18	3067599	rs7227886	A	G	315.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr18	3075503	rs10667835	C	CAAA	6174.73	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr18	3075712	rs2298539	C	A	2124.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr18	3079400	.	T	C	1154.77	.	AC=2;AF=1.00;AN=2;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr18	3089522	rs948298	G	T	1188.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr18	3112568	rs8097874	C	A	213.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr18	3120060	rs6506068	G	A	623.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr18	3176040	rs8099021	C	G	805.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr18	3188613	rs113174034	T	C	2162.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr18	3188630	rs140742792	AG	A	2682.73	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr18	3188642	rs111506648	A	G	2914.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.24;SOR=1.131;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr18	3188664	.	TACACACAC	T,TAC	3799.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.10;QD=36.89;SOR=1.071;set=HC	GT:AD:AF:DP	1/2:0,25,78:0.24,0.76:103
chr18	3188715	rs73375192	T	C	3192.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr18	3188857	rs2230166	A	G	10965.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr18	3188873	rs2230165	G	A	11689.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr18	3272744	rs7242012	A	G	292.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr18	3272798	rs6506097	AG	TA	1259.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr18	3272855	rs6506099	C	T	1943.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr18	3272874	rs7407072	T	A	2219.73	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr18	3273153	rs7407045	C	T	1025.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr18	3277466	rs6506100	TG	CA	6344.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr18	3277691	rs6506102	A	T	1448.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr18	3447871	rs151472	T	C	3315.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.96;SOR=1.962;set=HC	GT:AD:AF:DP	1/1:0,123:1.00:123
chr18	3581966	rs56017170	G	A	2989.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr18	5133199	rs78070621	G	A	858.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr18	5196981	rs292285	G	A	1519.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr18	5196992	rs292286	T	C	1581.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr18	5197057	rs115401521	T	C	1663.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr18	5232843	rs9963665	C	T	3066.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr18	5233105	rs3887348	C	G	717.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr18	5238208	rs1061666	C	T	991.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:1,37:0.97:38
chr18	5238412	rs9627	C	A	1778.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr18	5238442	rs11795	G	C	1186.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr18	5292030	rs620652	A	G	2665.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr18	5292207	rs11327444	CA	C	182.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.237;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.31;ReadPosRankSum=-0.088;SOR=1.314;set=HC	GT:AD:AF:DP	0/1:6,16:0.73:22
chr18	5407839	rs2874686	C	T	1649.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr18	5407911	rs2322093	A	G	398.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr18	5410574	rs3817466	A	G	3917.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:1,150:0.99:151
chr18	5420014	rs112341867	G	GA	208.80	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:1,12:0.92:13
chr18	5433722	rs3931700	C	T	1286.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr18	5437961	rs5822861	T	TC	4298.73	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr18	5577258	rs11876037	T	C	990.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr18	5630531	rs4083186	G	A	1059.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr18	5630676	rs56114101	G	T	273.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr18	5956238	rs3737353	C	T	564.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr18	5956425	rs3737354	C	T	1680.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr18	5956483	rs3737357	G	C	1011.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr18	5956502	rs34472471	GCT	G	1312.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr18	5960010	.	CAT	C	403	.	AC=2;AF=1.00;AN=2;BRF=0.31;FR=1.0000;HP=2;HapScore=2;MGOF=108;MMLQ=24;MQ=53.39;NF=7;NR=2;PP=403;QD=46.2222222222;SC=GAAATACATACATATATATAT;SbPval=0.56;Source=Platypus;TC=10;TCF=8;TCR=2;TR=9;WE=5960019;WS=5960000;set=Platypus	GT:AD:AF:DP	1/1:1,9:0.90:10
chr18	5960012	.	T	TATATATATAC	502.73	.	AC=2;AF=1.00;AN=2;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.48;QD=50.27;SOR=4.804;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr18	5960026	.	T	TAC	727.73	.	AC=2;AF=1.00;AN=2;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.42;QD=51.98;SOR=5.421;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr18	5960038	.	C	CATATATAT	859.73	.	AC=2;AF=1.00;AN=2;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.25;QD=47.76;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr18	5960040	rs199658556	C	T	1006.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.96;QD=47.94;SOR=1.508;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr18	5960042	.	C	T	1017.77	.	AC=2;AF=1.00;AN=2;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.15;QD=46.26;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr18	5960048	rs368307522	T	C	1062.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.48;QD=44.28;SOR=1.051;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr18	5960060	rs10658145	C	CGT	1170.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.88;QD=43.36;SOR=0.922;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr18	5960165	rs505559	G	A	3276.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr18	6032384	.	TACAC	T	53.70	.	AC=2;AF=1.00;AN=2;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr18	6511473	rs4798453	C	T	440.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr18	6511669	rs4798454	T	G	1276.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr18	6851267	rs8087719	G	A	219.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr18	6873354	rs2282522	G	A	504.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr18	6889973	rs4239328	A	G	4260.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:2,163:0.99:165
chr18	6890434	rs1116757	A	G	2708.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr18	6890591	rs1116756	C	T	395.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr18	6896450	rs11081282	C	T	1480.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr18	6898415	rs12185460	C	T	1017.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr18	6912004	rs1346931	G	A	5566.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr18	6912143	rs1056408	A	C	1973.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr18	6943264	rs2016639	G	A	2262.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr18	6947013	rs489023	C	T	425.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr18	6956393	rs11875257	T	C	623.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr18	6980457	rs693360	T	C	1119.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr18	6980523	rs607230	T	C	1037.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr18	6982443	rs538815	C	T	1534.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr18	6985270	rs11664063	C	T	1500.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr18	6985468	rs11660907	A	C	2166.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr18	6985499	rs11664115	C	T	4408.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.99;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,98:1.00:98
chr18	6985506	rs616722	T	C	4622.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.65;SOR=0.865;set=HC	GT:AD:AF:DP	1/1:0,111:1.00:111
chr18	6985655	rs617573	C	T	1592.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr18	6986259	rs62081531	G	A	1958.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr18	6993673	rs62081533	T	C	1966.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr18	6997818	rs12961939	A	C	7848.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:3,291:0.99:294
chr18	6999315	rs525394	A	G	917.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr18	6999368	rs525231	C	T	3172.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.33;SOR=1.163;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr18	6999377	rs525206	A	G	3403.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.51;SOR=1.151;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr18	6999628	rs625106	T	C	1142.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr18	6999694	rs693754	T	C	681.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr18	7015714	rs603258	T	C	892.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr18	7016794	rs35419086	TC	T	337.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr18	7017322	rs539713	A	G	845.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr18	7035915	rs677136	A	C	2013.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:3,72:0.96:75
chr18	7037866	rs647595	T	C	283.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr18	7117623	rs334406	G	C	1875.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr18	7117782	rs334407	A	G	1798.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr18	7117880	rs36201812	CCCCGCCCCGT	C	891.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;MQ=60.83;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr18	7774104	rs875530	T	C	672.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr18	8244282	rs60751184	C	CA	495.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.221;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=2.764;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.99;ReadPosRankSum=1.489;SOR=0.180;set=HC	GT:AD:AF:DP	1/1:3,28:0.90:31
chr18	8244335	rs12962826	G	A	496.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr18	8247734	rs78327892	C	T	893.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr18	8343381	rs16953329	T	G	1324.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr18	8379046	rs3826631	A	G	767.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.41;SOR=4.514;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr18	8379046	.	AGG	GGC	381	.	AC=2;AF=1.00;AN=2;BRF=0.19;FR=1.0000;HP=8;HapScore=2;MGOF=19;MMLQ=24;MQ=60.0;NF=14;NR=0;PP=381;QD=31.033419633;SC=TTGGGGAGGGAGGGGGAAGGG;SbPval=1.0;Source=Platypus;TC=16;TCF=15;TCR=1;TR=14;WE=8379056;WS=8379036;set=Platypus	GT:AD:AF:DP	1/1:2,14:0.88:16
chr18	8379048	rs9789240	G	C	767.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.41;SOR=4.514;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr18	8379095	rs3819095	G	C	1016.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr18	8380473	rs657374	T	A	1450.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr18	8387058	rs664201	T	G	4881.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.98;SOR=0.748;set=HC	GT:AD:AF:DP	1/1:0,111:1.00:111
chr18	8387065	rs594742	C	T	4831.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.93;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,110:1.00:110
chr18	8387195	rs593978	G	A	1262.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr18	8387219	rs593950	G	C	804.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr18	8783835	rs35739383	T	C	2928.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr18	8784370	rs918272	A	G	4149.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr18	8784723	rs3744979	A	G	6459.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;MQ=59.99;set=Intersection	GT:AD:AF:DP	1/1:4,241:0.98:245
chr18	8786117	.	C	CCCA,CCCCA	1429.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=61.86;QD=51.06;SOR=5.283;set=HC	GT:AD:AF:DP	1/2:0,10,18:0.36,0.64:28
chr18	8793236	rs556991	T	C	2229.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:2,88:0.98:90
chr18	8798185	rs12386117	G	A	2186.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:2,82:0.98:84
chr18	8821301	rs656602	T	C	711.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr18	8821556	rs629142	G	T	418.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr18	8824590	rs610915	C	A	422.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr18	8826083	rs3744977	G	C	3248.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr18	8828952	rs2242273	C	T	1378.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr18	8829035	rs2170297	G	A	509.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr18	8831615	rs11665124	G	A	6668.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:3,252:0.99:255
chr18	9105108	rs1396740	C	T	498.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr18	9117867	rs906807	T	C	1043.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr18	9122591	rs76552443	T	C	219.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.948;ClippingRankSum=0.000;DB;DP=232;ExcessHet=3.0103;FS=3.185;MLEAC=1;MLEAF=0.500;MQ=58.47;MQRankSum=-13.667;QD=0.95;ReadPosRankSum=3.386;SOR=0.468;set=HC	GT:AD:AF:DP	0/1:193,38:0.16:231
chr18	9122611	rs72935225	T	C	148.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.350;ClippingRankSum=0.000;DB;DP=246;ExcessHet=3.0103;FS=1.380;MLEAC=1;MLEAF=0.500;MQ=58.54;MQRankSum=-13.696;QD=0.61;ReadPosRankSum=0.684;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:207,38:0.16:245
chr18	9182329	rs149819427	T	TA	232.80	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.80;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr18	9182331	.	A	AACTTCAGGTAGGT	858	.	AC=2;AF=1.00;AN=2;BRF=0.23;FR=0.9999;HP=2;HapScore=2;MGOF=5;MMLQ=24;MQ=60.0;NF=2;NR=0;PP=858;QD=479.0;SC=GTGGTGCGTAACCTATTGTAT;SbPval=1.0;Source=Platypus;TC=4;TCF=4;TCR=0;TR=2;WE=9182340;WS=9182321;set=Platypus	GT:AD:AF:DP	1/1:2,2:0.50:4
chr18	9182332	.	C	T	29	.	AC=2;AF=1.00;AN=2;BRF=0.23;FR=0.9999;HP=2;HapScore=2;MGOF=5;MMLQ=24;MQ=60.0;NF=3;NR=0;PP=29;QD=21.2570708491;SC=TGGTGCGTAACCTATTGTATA;SbPval=1.0;Source=Platypus;TC=6;TCF=4;TCR=2;TR=3;WE=9182340;WS=9182321;set=Platypus	GT:AD:AF:DP	1/1:3,3:0.50:6
chr18	9182332	rs60039834	C	CTTCAGGTAGGTT	277.77	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.29;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr18	9255982	rs4798791	A	G	1203.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr18	9577352	rs329000	C	T	371.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr18	9708582	rs62078920	C	T	1215.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr18	9886567	rs62078799	T	G	729.96	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.037;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.45;MQRankSum=0.435;QD=20.28;ReadPosRankSum=0.692;SOR=1.067;set=HC	GT:AD:AF:DP	0/1:2,34:0.94:36
chr18	9886568	rs112324257	TTATG	T	719.92	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.528;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.66;MQRankSum=0.435;QD=20.00;ReadPosRankSum=0.691;SOR=1.067;set=HC	GT:AD:AF:DP	0/1:2,34:0.94:36
chr18	9887394	rs2240910	C	T	10132.77	.	AC=2;AF=1.00;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	1/1:2,395:0.99:397
chr18	9887497	rs11081510	G	A	17381.77	.	AC=2;AF=1.00;AN=2;DB;DP=475;set=Intersection	GT:AD:AF:DP	1/1:1,461:1.00:462
chr18	9887546	rs2240906	G	A	17634.77	.	AC=2;AF=1.00;AN=2;DB;DP=486;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.95;QD=36.97;SOR=0.860;set=HC	GT:AD:AF:DP	1/1:0,477:1.00:477
chr18	9888069	rs2240905	A	G	1400.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr18	10454960	rs28769876	C	G	2970.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr18	10455077	rs28379930	A	G	1703.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr18	10455133	rs28484275	C	T	700.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr18	10468315	rs3748418	A	G	107.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr18	10468327	rs3748417	A	G	167.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr18	10471732	rs3748415	G	A	3918.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:2,148:0.99:150
chr18	10471764	rs3748414	C	T	6313.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.562;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=3.259;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=43.85;ReadPosRankSum=-0.723;SOR=0.427;set=HC	GT:AD:AF:DP	1/1:1,143:0.99:144
chr18	10471773	rs3748413	C	G	6526.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.642;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=3.367;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=42.94;ReadPosRankSum=-0.631;SOR=0.504;set=HC	GT:AD:AF:DP	1/1:1,151:0.99:152
chr18	10485357	rs489837	T	C	2028.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=48.30;SOR=3.716;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr18	10485363	rs91958	T	C	2388.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.07;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr18	10485369	rs91959	G	A	2405.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.74;SOR=2.712;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr18	10487918	rs3185480	C	T	2365.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr18	10488064	rs3811368	C	T	718.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr18	10488091	rs1045584	G	T	566.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr18	10530928	rs509370	T	C	136.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr18	10677880	rs5823112	GA	G	236.52	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:2,16:0.89:18
chr18	10680104	rs1944383	C	T	357.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr18	10680132	rs688237	C	T	874.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.04;SOR=2.419;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr18	10680142	rs688222	T	A	923.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.16;SOR=2.030;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr18	10680163	rs487037	G	A	1003.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr18	10715851	rs28712767	A	G	800.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr18	10759840	rs35033671	C	A	2361.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:1,85:0.99:86
chr18	10763218	rs2865131	T	C	697.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr18	10784733	rs3830641	GA	G	436.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr18	10785070	rs12604151	A	C	360.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr18	10787047	rs6505592	G	A	1215.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.43;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr18	10789014	rs2870106	G	A	798.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr18	10797362	rs7407224	T	G	1352.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr18	11066010	rs7236754	T	C	200.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr18	11619799	rs112261054	ATGT	A	2302.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr18	11824829	rs1647555	A	G	1058.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr18	11824880	rs1647556	T	A	4854.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.13;SOR=1.118;set=HC	GT:AD:AF:DP	1/1:0,110:1.00:110
chr18	11824886	rs1647557	T	G	5035.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.68;SOR=1.131;set=HC	GT:AD:AF:DP	1/1:0,118:1.00:118
chr18	11852182	rs1786581	C	T	711.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr18	11864707	rs4315401	A	G	496.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr18	12012457	rs635370	A	C	864.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.18;SOR=2.200;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr18	12012467	rs16976956	A	C	830.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.15;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr18	12014220	rs45512594	G	A	1542.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr18	12014411	rs643107	T	G	1160.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr18	12057195	rs9959517	A	G	1747.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr18	12057389	rs9959781	C	G	11414.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr18	12057403	rs9959774	A	G	11797.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr18	12057809	rs9960429	G	C	283.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr18	12067762	rs7506731	C	T	1551.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:1,54:0.98:55
chr18	12067777	rs6505712	T	C	1459.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.62;SOR=1.314;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr18	12067919	rs12966234	G	A	1600.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.60;SOR=2.468;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr18	12068078	rs34203217	G	T	4937.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr18	12076504	rs12966109	A	C	244.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr18	12076554	rs200141686	CGCCGCCGCA	C	143	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.85;QD=35.75;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr18	12094006	rs9964971	C	T	532.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr18	12096249	rs1986751	G	T	1164.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:2,46:0.96:48
chr18	12097547	rs4796945	A	G	718.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr18	12099654	rs6505715	T	C	795.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr18	12115002	rs9959641	A	G	145.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr18	12115310	rs8091585	C	T	776.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr18	12115339	rs8091463	A	G	1010.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr18	12115509	rs4519391	G	A	455.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr18	12124152	rs11873244	C	G	776.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr18	12125657	rs7243248	G	A	1796.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr18	12126407	rs9303759	T	A	463.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr18	12254562	rs71369912	C	CCCGCGCACACACCCAT	9377.73	.	AC=2;AF=1.00;AN=2;DB;DP=483;set=Intersection	GT:AD:AF:DP	1/1:2,341:0.99:343
chr18	12308243	rs8087840	T	A	511.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.588;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=34.12;ReadPosRankSum=2.951;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:2,13:0.87:15
chr18	12308245	rs8086821	C	T	511.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.588;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=34.12;ReadPosRankSum=2.951;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:2,13:0.87:15
chr18	12308377	rs8086993	C	A	56.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr18	12348285	rs11553521	T	C	3158.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr18	12351342	rs11080572	C	T	1553.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr18	12358997	rs7407640	A	G	2293.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr18	12359920	rs8097342	G	A	368.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr18	12363950	rs2298542	C	T	250.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr18	12421442	rs3906620	T	A	392.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr18	12429313	rs3760550	C	T	838.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr18	12453005	rs499013	A	G	387.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr18	12512385	rs139581657	CAA	C	2064.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.816;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=4.413;MLEAC=2;MLEAF=1.000;MQ=60.18;MQRankSum=0.379;QD=18.77;ReadPosRankSum=-1.067;SOR=1.257;set=HC	GT:AD:AF:DP	1/1:18,92:0.84:110
chr18	12512559	rs550613	C	A	2750.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr18	12512574	rs567709	T	C	1914.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr18	12546608	rs35057526	GA	G	62.87	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=63.02;QD=12.57;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr18	12634934	rs35302137	CA	C	126.25	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.364;ClippingRankSum=-0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.43;ReadPosRankSum=1.206;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:4,13:0.76:17
chr18	12634986	rs12454931	T	G	709.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:1,29:0.97:30
chr18	12657431	rs34472716	G	A	349.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr18	12658191	rs3902981	T	G	236.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.68;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr18	12658600	rs1062235	A	G	2988.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr18	12662148	rs1129214	G	A	1003.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr18	12662190	rs5823232	G	GA	316.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.334;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.40;MQRankSum=0.617;QD=14.40;ReadPosRankSum=0.126;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:3,19:0.86:22
chr18	12678486	rs12966424	A	G	1453.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr18	12680595	rs35232551	CA	C	58.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.638;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=14.474;MLEAC=1;MLEAF=0.500;MQ=57.98;MQRankSum=-2.583;QD=2.26;ReadPosRankSum=0.953;SOR=3.611;set=HC	GT:AD:AF:DP	0/1:14,12:0.46:26
chr18	12695415	rs34277169	C	A	57.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150;ClippingRankSum=-0.000;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.45;ReadPosRankSum=-0.319;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr18	12700918	rs137976891	CATAT	C	1697.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr18	12703067	rs3809916	A	G	2279.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr18	12703192	rs3809919	C	T	2199.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr18	12718593	rs2302768	A	G	2134.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:2,87:0.98:89
chr18	12819093	.	C	CAA	83.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.259;ClippingRankSum=-0.000;DP=13;ExcessHet=3.0103;FS=6.021;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.98;ReadPosRankSum=-0.989;SOR=3.816;set=HC	GT:AD:AF:DP	0/1:3,9:0.75:12
chr18	12951738	rs1474043	G	A	536.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr18	12955439	rs11286163	CT	C	283.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.13;QD=16.69;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr18	12971095	rs80081342	G	A	3128.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr18	12979028	rs56263236	T	C	138.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr18	12982759	rs192091365	TG	AA	1919.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr18	12984144	rs6505776	C	A	2163.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr18	12986802	rs113784266	G	GT	285.14	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.981;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=15.84;ReadPosRankSum=1.335;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:2,16:0.89:18
chr18	13001512	rs4499304	G	C	571.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr18	13008369	rs6505777	A	G	410.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr18	13008701	.	AT	A	36.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.817;ClippingRankSum=-0.000;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.06;ReadPosRankSum=-0.386;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:6,6:0.50:12
chr18	13040084	rs7229869	A	C	281.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr18	13041032	rs79796549	G	A	884.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr18	13049948	rs11441028	G	GA	435.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:1,20:0.95:21
chr18	13068132	rs578208	T	C	1830.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr18	13069782	rs6505780	C	T	2361.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr18	13072979	rs1787013	T	C	3779.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr18	13087789	rs472992	A	G	512.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr18	13087815	rs527839	G	A	431.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr18	13088673	rs498685	T	C	467.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr18	13089354	rs75076422	A	G	148.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr18	13095609	rs474337	T	C	3439.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr18	13096436	rs556371	T	C	647.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr18	13104900	rs79944400	G	A	685.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr18	13114025	rs75846614	T	C	1439.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr18	13116432	rs1786263	G	T	2875.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr18	13643179	rs11080665	C	A	772.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr18	13666768	rs1149356	A	G	3167.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr18	13671689	.	CAA	C	94.52	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.524;ClippingRankSum=-0.000;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.97;ReadPosRankSum=0.353;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:11,8:0.42:19
chr18	13671976	.	C	CA	148.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.263;ClippingRankSum=0.000;DP=81;ExcessHet=3.0103;FS=1.181;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.582;QD=2.48;ReadPosRankSum=-1.204;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:44,16:0.27:60
chr18	13731407	rs61281036	C	CA	51	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.549;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.67;ReadPosRankSum=0.431;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:2,7:0.78:9
chr18	13759816	rs4797812	T	C	331.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.47;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr18	13759820	rs4797813	G	T	364.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.53;SOR=4.615;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr18	13762011	rs4461147	C	A	1308.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr18	13825727	rs1541276	A	C	2900.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr18	13826088	rs17848292	C	T	5674.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr18	13826391	rs2236700	C	G	8226.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr18	13826508	rs2236701	C	T	3475.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr18	14105923	rs2159940	T	C	1063.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr18	14124330	.	G	A	1346.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.393;ClippingRankSum=0.000;DP=188;ExcessHet=3.0103;FS=3.238;MLEAC=1;MLEAF=0.500;MQ=58.54;MQRankSum=-8.294;QD=7.32;ReadPosRankSum=0.110;SOR=0.433;set=HC	GT:AD:AF:DP	0/1:141,43:0.23:184
chr18	14124335	.	G	A	1337.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.921;ClippingRankSum=0.000;DP=188;ExcessHet=3.0103;FS=3.277;MLEAC=1;MLEAF=0.500;MQ=58.61;MQRankSum=-8.275;QD=7.31;ReadPosRankSum=0.601;SOR=0.429;set=HC	GT:AD:AF:DP	0/1:142,41:0.22:183
chr18	14124343	.	T	C	1061.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.936;ClippingRankSum=0.000;DP=192;ExcessHet=3.0103;FS=8.855;MLEAC=1;MLEAF=0.500;MQ=58.68;MQRankSum=-8.680;QD=5.68;ReadPosRankSum=2.296;SOR=0.596;set=HC	GT:AD:AF:DP	0/1:152,35:0.19:187
chr18	14124346	.	C	T	968.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.799;ClippingRankSum=0.000;DP=195;ExcessHet=3.0103;FS=10.559;MLEAC=1;MLEAF=0.500;MQ=58.70;MQRankSum=-8.942;QD=5.07;ReadPosRankSum=2.090;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:157,34:0.18:191
chr18	14124359	.	G	C	323.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.134;ClippingRankSum=0.000;DP=211;ExcessHet=3.0103;FS=8.819;MLEAC=1;MLEAF=0.500;MQ=58.80;MQRankSum=-9.358;QD=1.56;ReadPosRankSum=0.422;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:173,34:0.16:207
chr18	14156143	rs149108958	A	G	279.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.06;QD=25.43;SOR=3.442;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr18	14156241	rs115684852	A	T	1352.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.49;QD=26.52;SOR=1.702;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr18	14157291	rs9959262	A	T	3630.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr18	14157373	rs7505684	T	A	1148.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr18	14179603	rs4797872	A	G	121.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr18	14378533	rs2137484	G	C	1052.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr18	14393945	rs56386651	G	A	57.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr18	14542979	rs200806970	A	G	4871.77	.	AC=1;AF=0.500;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	0/1:123,221:0.64:344
chr18	14543039	rs45570841	T	C	252.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.190;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=51.944;MLEAC=1;MLEAF=0.500;MQ=57.54;MQRankSum=-12.981;QD=1.16;ReadPosRankSum=-6.137;SOR=4.331;set=HC	GT:AD:AF:DP	0/1:190,27:0.12:217
chr18	14543139	rs28535987	T	C	3154.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr18	14752768	rs45620343	G	A	1370.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr18	14752957	rs12457503	G	A	3577.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr18	14779833	.	T	TCCA	166	.	AC=1;AF=0.500;AN=2;BRF=0.17;FR=0.5000;HP=1;HapScore=3;MGOF=45;MMLQ=28;MQ=54.63;NF=4;NR=0;PP=166;QD=60.4935641014;SC=GTGGTTGTTATTCAATAGAAT;SbPval=1.0;Source=Platypus;TC=17;TCF=15;TCR=2;TR=4;WE=14779842;WS=14779823;set=Platypus	GT:AD:AF:DP	1/0:13,4:0.24:17
chr18	14779834	.	T	C	199	.	AC=1;AF=0.500;AN=2;BRF=0.17;FR=0.5000;HP=1;HapScore=3;MGOF=45;MMLQ=28;MQ=52.96;NF=3;NR=0;PP=199;QD=77.9237375157;SC=TGGTTGTTATTCAATAGAATA;SbPval=1.0;Source=Platypus;TC=20;TCF=18;TCR=2;TR=3;WE=14779842;WS=14779823;set=Platypus	GT:AD:AF:DP	1/0:17,3:0.15:20
chr18	14779910	.	T	C	97.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.475;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=2.222;MLEAC=1;MLEAF=0.500;MQ=58.30;MQRankSum=-5.504;QD=3.06;ReadPosRankSum=-2.655;SOR=1.561;set=HC	GT:AD:AF:DP	0/1:28,4:0.12:32
chr18	14779919	.	G	T	238.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.896;ClippingRankSum=0.000;DP=42;ExcessHet=3.0103;FS=3.377;MLEAC=1;MLEAF=0.500;MQ=58.40;MQRankSum=-5.883;QD=5.68;ReadPosRankSum=-2.348;SOR=1.375;set=HC	GT:AD:AF:DP	0/1:33,9:0.21:42
chr18	14779920	.	G	A	238.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.051;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=3.356;MLEAC=1;MLEAF=0.500;MQ=58.48;MQRankSum=-6.035;QD=5.43;ReadPosRankSum=-1.966;SOR=1.376;set=HC	GT:AD:AF:DP	0/1:35,9:0.20:44
chr18	14779925	.	C	T	408.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.013;ClippingRankSum=0.000;DP=48;ExcessHet=3.0103;FS=2.969;MLEAC=1;MLEAF=0.500;MQ=58.61;MQRankSum=-5.264;QD=8.52;ReadPosRankSum=-2.538;SOR=1.445;set=HC	GT:AD:AF:DP	0/1:36,12:0.25:48
chr18	14779940	rs200991381	C	T	729.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.116;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=7.515;MLEAC=1;MLEAF=0.500;MQ=57.94;MQRankSum=-6.177;QD=12.16;ReadPosRankSum=-2.660;SOR=1.320;set=HC	GT:AD:AF:DP	0/1:40,20:0.33:60
chr18	14779941	rs202240589	T	G	729.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.805;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=5.481;MLEAC=1;MLEAF=0.500;MQ=57.73;MQRankSum=-6.269;QD=11.96;ReadPosRankSum=-2.772;SOR=1.132;set=HC	GT:AD:AF:DP	0/1:40,21:0.34:61
chr18	14779951	rs200058168	A	C	729.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.384;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=7.436;MLEAC=1;MLEAF=0.500;MQ=57.77;MQRankSum=-6.334;QD=11.77;ReadPosRankSum=-1.608;SOR=1.078;set=HC	GT:AD:AF:DP	0/1:41,21:0.34:62
chr18	14779955	.	T	TA	771.73	.	AC=1;AF=0.500;AN=2;DP=64;set=Intersection	GT:AD:AF:DP	0/1:41,23:0.36:64
chr18	14779986	rs76927023	G	A	589.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:41,30:0.42:71
chr18	14780019	rs72873710	G	T	1644.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.516;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=1.946;MLEAC=1;MLEAF=0.500;MQ=55.49;MQRankSum=-5.848;QD=21.93;ReadPosRankSum=1.785;SOR=0.469;set=HC	GT:AD:AF:DP	0/1:32,43:0.57:75
chr18	14780024	rs79199021	T	C	1647.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.753;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=0.907;MLEAC=1;MLEAF=0.500;MQ=55.43;MQRankSum=-5.774;QD=22.27;ReadPosRankSum=1.242;SOR=0.507;set=HC	GT:AD:AF:DP	0/1:31,43:0.58:74
chr18	14780037	rs72873711	C	A	874.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:24,43:0.64:67
chr18	14780056	rs200028987	A	G	1176.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.307;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.94;MQRankSum=-4.068;QD=23.07;ReadPosRankSum=0.553;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:18,33:0.65:51
chr18	14780064	rs78339886	A	G	1046.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.199;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.68;MQRankSum=-3.575;QD=24.34;ReadPosRankSum=1.233;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:16,27:0.63:43
chr18	14780082	rs11080793	G	A	1009.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.17;QD=40.39;SOR=3.528;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr18	14780082	.	GC	AC,AT	296	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.49;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=120;MMLQ=28;MQ=47.34;NF=0,0;NR=22,15;PP=107,296;QD=6.44414602487;SC=ATGTGAAAATGCAAAATCAGA;SbPval=1.0;Source=Platypus;TC=22;TCF=0;TCR=22;TR=22,15;WE=14780091;WS=14780072;set=Platypus	GT:AF:DP	0/1:1.00:22
chr18	14780083	.	C	T	387.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.913;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.17;MQRankSum=-3.171;QD=15.51;ReadPosRankSum=1.277;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:9,16:0.64:25
chr18	14780108	.	C	T	295.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.087;ClippingRankSum=-0.000;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.56;MQRankSum=-2.166;QD=24.65;ReadPosRankSum=1.004;SOR=1.445;set=HC	GT:AD:AF:DP	0/1:4,8:0.67:12
chr18	14780116	rs79644245	A	C	298.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.744;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.94;MQRankSum=-1.876;QD=27.16;ReadPosRankSum=-0.153;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:3,8:0.73:11
chr18	14780130	rs72873713	G	C	189.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:3,7:0.70:10
chr18	14830041	.	TG	CA	103	.	AC=1;AF=0.500;AN=2;BRF=0.63;FR=0.5000;HP=1;HapScore=2;MGOF=3;MMLQ=28;MQ=46.03;NF=3;NR=0;PP=103;QD=52.1559582874;SC=ACTGAGACTCTGTTTAGTTGT;SbPval=1.0;Source=Platypus;TC=11;TCF=10;TCR=1;TR=3;WE=14830050;WS=14830031;set=Platypus	GT:AD:AF:DP	1/0:8,3:0.27:11
chr18	14830262	.	C	T	179.77	.	AC=1;AF=0.500;AN=2;DP=22;set=Intersection	GT:AD:AF:DP	0/1:11,9:0.45:20
chr18	14842846	.	G	A	85	.	AC=1;AF=0.500;AN=2;BRF=0.55;FR=0.5000;HP=4;HapScore=2;MGOF=4;MMLQ=28;MQ=46.04;NF=6;NR=0;PP=85;QD=19.9618687579;SC=TTTGTGGCTGGTTTTGTCATA;SbPval=1.0;Source=Platypus;TC=24;TCF=17;TCR=7;TR=6;WE=14842854;WS=14842836;set=Platypus	GT:AD:AF:DP	1/0:18,6:0.25:24
chr18	14848820	rs4090319	C	T	1684.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:2,67:0.97:69
chr18	14852335	rs12386087	C	A	2558.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr18	18534702	rs2663699	T	C	196.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.435;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=2.190;MLEAC=1;MLEAF=0.500;MQ=56.54;MQRankSum=-9.054;QD=1.11;ReadPosRankSum=-2.152;SOR=0.984;set=HC	GT:AD:AF:DP	0/1:152,25:0.14:177
chr18	18588245	.	G	GA	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.709;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.30;ReadPosRankSum=1.277;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:22,7:0.24:29
chr18	19065494	rs7234335	C	G	2050.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr18	19079537	rs8087553	A	G	1114.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr18	19079853	rs4800747	A	G	10399.77	.	AC=2;AF=1.00;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	1/1:0,372:1.00:372
chr18	19100517	rs1395251	T	C	2715.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr18	19100758	rs34960489	A	ATCT	8342.73	.	AC=2;AF=1.00;AN=2;DB;DP=215;MQ=60.05;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr18	19100854	rs9947441	A	G	832.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr18	19115896	rs4800780	A	T	526.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr18	19119801	rs1818274	C	T	2139.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr18	19119813	rs35487404	T	TA	123.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.595;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.659;QD=1.36;ReadPosRankSum=1.486;SOR=0.774;set=HC	GT:AD:AF:DP	0/1:71,20:0.22:91
chr18	19119974	rs35031202	GAT	G	2188.73	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:17,103:0.86:120
chr18	19144358	.	C	CT	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.113;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;FS=1.773;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.96;ReadPosRankSum=-0.204;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:26,7:0.21:33
chr18	19153494	rs973730	C	T	6969.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr18	19358240	rs45552034	G	C	1682.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr18	19408950	rs9989532	C	T	2941.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.27;SOR=0.884;set=HC	GT:AD:AF:DP	1/1:0,112:1.00:112
chr18	19423963	rs3216119	GT	G	762.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr18	19752072	.	TACC	T	371.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.348;ClippingRankSum=0.000;DP=358;ExcessHet=3.0103;FS=2.295;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.26;ReadPosRankSum=0.771;SOR=0.408;set=HC	GT:AD:AF:DP	0/1:266,29:0.10:295
chr18	19780527	rs11352746	AC	A	6598.73	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr18	20555219	rs2336916	T	C	2809.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr18	20564800	rs3052770	TTCA	T	1081.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.27;SOR=2.215;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr18	20816942	rs1966657	A	G	402.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr18	20817276	rs12185467	G	C	2194.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr18	20945768	rs11663274	C	T	2957.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr18	20953720	rs8099409	G	A	4626.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:1,175:0.99:176
chr18	20964769	rs8094375	A	G	1505.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr18	21017835	rs12967028	CT	TC	10394.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr18	21033582	rs8086258	G	C	6623.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr18	21043106	rs72884533	T	C	1508.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:1,54:0.98:55
chr18	21055092	rs7235571	A	C	977.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr18	21059547	rs200137533	C	CT	46.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.224;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=1.122;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.45;ReadPosRankSum=-0.418;SOR=0.502;set=HC	GT:AD:AF:DP	0/1:86,17:0.17:103
chr18	21088081	rs1652381	T	C	1879.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr18	21089320	rs10688887	A	AAT	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.204;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.08;ReadPosRankSum=1.660;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:31,5:0.14:36
chr18	21107628	rs111369676	G	GTATTGTATTTCT	4099.73	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr18	21109250	rs1788825	T	C	5178.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr18	21109269	rs1652375	T	C	4324.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr18	21114700	rs11659341	T	C	1125.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr18	21120381	.	TA	T	626.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.009;ClippingRankSum=0.000;DP=189;ExcessHet=3.0103;FS=0.709;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=2.466;QD=3.60;ReadPosRankSum=-0.501;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:102,72:0.41:174
chr18	21123536	rs201618643	TAA	T,TA	777.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.731;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=11.244;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=11.61;ReadPosRankSum=-0.337;SOR=1.301;set=HC	GT:AD:AF:DP	1/2:10,23,34:0.34,0.51:67
chr18	21124834	rs35047242	A	G	571.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr18	21124907	rs3837910	A	ACC	1138.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.098;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=18.293;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.48;ReadPosRankSum=-0.568;SOR=4.320;set=HC	GT:AD:AF:DP	0/1:9,34:0.79:43
chr18	21124945	.	C	G	3281.77	.	AC=2;AF=1.00;AN=2;DP=130;set=Intersection	GT:AD:AF:DP	1/1:2,124:0.98:126
chr18	21134569	rs11340795	CA	C	159.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.848;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=2.399;MLEAC=1;MLEAF=0.500;MQ=59.76;MQRankSum=0.000;QD=3.07;ReadPosRankSum=-0.093;SOR=1.055;set=HC	GT:AD:AF:DP	0/1:30,22:0.42:52
chr18	21148863	rs12970899	A	G	2941.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr18	21192261	rs1652366	G	T	2616.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr18	21214247	rs7244042	T	G	485.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.13;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr18	21229309	rs76122475	A	G	3148.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:1,96:0.99:97
chr18	21293869	rs112340800	CT	C	1955.73	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:13,115:0.90:128
chr18	21294117	rs34200895	TA	T	1030.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.175;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.16;MQRankSum=0.314;QD=18.08;ReadPosRankSum=-0.608;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:3,54:0.95:57
chr18	21333528	.	T	C	987.77	.	AC=2;AF=1.00;AN=2;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr18	21338276	rs6507894	C	T	2992.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr18	21338515	rs11308832	TC	T	1957.73	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr18	21355912	rs139666002	G	A	8132.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:1,305:1.00:306
chr18	21393229	rs11420756	A	AT	573.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.535;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=0.000;QD=19.12;ReadPosRankSum=1.305;SOR=2.753;set=HC	GT:AD:AF:DP	1/1:1,29:0.97:30
chr18	21394384	rs34713637	G	A	9155.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:0,348:1.00:348
chr18	21395358	rs2155841	G	C	2784.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr18	21400028	rs6507956	G	T	1374.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr18	21414110	rs1109950	G	A	471.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr18	21417026	rs35756007	C	G	3221.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr18	21438632	rs8092476	T	C	6169.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr18	21441461	rs8093035	G	A	1506.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr18	21441484	rs8093042	G	A	2092.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr18	21447771	rs142876631	A	G	5519.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr18	21479181	rs34000707	CT	C	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.510;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.04;ReadPosRankSum=0.770;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:30,10:0.25:40
chr18	21483159	.	T	G	1262.77	.	AC=2;AF=1.00;AN=2;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr18	21501112	.	A	G	1928.77	.	AC=2;AF=1.00;AN=2;DP=68;set=Intersection	GT:AD:AF:DP	1/1:1,66:0.99:67
chr18	21511089	rs1154233	A	G	9710.77	.	AC=2;AF=1.00;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	1/1:0,369:1.00:369
chr18	21526015	rs368124937	AT	A	463.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:1,24:0.96:25
chr18	21644091	rs56229252	G	T	2496.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:3,96:0.97:99
chr18	21662816	rs2305024	A	C	4639.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr18	21693671	rs894931	G	A	8512.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr18	21694618	rs4800176	G	A	7639.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:2,286:0.99:288
chr18	21696599	rs28582690	A	C	1088.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr18	21698540	rs8083625	C	T	5092.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr18	21698618	rs370369440	ATT	A	616.87	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.817;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=2.500;MLEAC=1;MLEAF=0.500;MQ=60.38;MQRankSum=0.795;QD=15.42;ReadPosRankSum=-1.328;SOR=2.015;set=HC	GT:AD:AF:DP	0/1:11,29:0.72:40
chr18	21703649	rs9956079	A	G	355.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.41;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr18	21705616	rs4392147	C	T	753.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr18	21706390	.	TAA	T	277.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.951;ClippingRankSum=0.000;DP=48;ExcessHet=3.0103;FS=7.659;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=0.000;QD=6.61;ReadPosRankSum=0.037;SOR=3.209;set=HC	GT:AD:AF:DP	0/1:24,18:0.43:42
chr18	21706607	rs56130136	A	AT	1098.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.326;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.736;QD=9.39;ReadPosRankSum=-0.091;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:37,80:0.68:117
chr18	21710321	rs12970083	C	T	8588.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr18	21714221	.	G	GTTTT	191.77	.	AC=2;AF=1.00;AN=2;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.40;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr18	21714228	rs4800548	G	T	201.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.83;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr18	21723003	rs182985592	A	C	1493.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr18	21736933	rs1049683	T	G	1697.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr18	21739725	rs1049684	T	C	7232.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:1,268:1.00:269
chr18	21759593	rs12604451	T	C	2645.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr18	21912865	rs2848605	A	G	2937.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr18	22775185	rs1140026	C	T	3496.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:1,134:0.99:135
chr18	23854692	rs17224558	C	T	11816.77	.	AC=2;AF=1.00;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	1/1:1,437:1.00:438
chr18	23866349	rs3744961	G	A	6118.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr18	23866482	rs8089000	C	T	1308.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr18	23873300	rs7242872	A	C	282.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr18	23875336	rs1382260	T	A	1044.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr18	23895429	rs8084520	A	G	1421.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr18	23970146	rs3216114	TACAG	T	2574.73	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr18	24035650	rs146107679	TTTTG	T	3328.73	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr18	24035788	rs3755	G	A	6168.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr18	25532080	rs11564422	G	A	694.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr18	25532304	rs2289664	T	C	3447.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:1,128:0.99:129
chr18	25565082	rs1220144	A	G	9281.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:0,344:1.00:344
chr18	25570228	rs1628684	G	C	10327.77	.	AC=2;AF=1.00;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	1/1:0,388:1.00:388
chr18	25572837	rs1662733	G	A	4279.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr18	25573308	rs1662734	C	T	1820.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr18	25573622	rs2957286	G	C	4030.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr18	25727760	.	G	GA	669.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.823;ClippingRankSum=0.000;DP=434;ExcessHet=3.0103;FS=1.017;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=3.311;QD=1.75;ReadPosRankSum=1.034;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:293,90:0.23:383
chr18	25756811	rs35896910	T	C	111.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr18	25757048	rs113469494	A	C	1831.73	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:7,76:0.92:83
chr18	27879067	rs78549380	A	G	791.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr18	28598866	rs5823777	CTG	C	1452.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr18	28605715	rs202439	A	T	1416.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr18	28605891	rs200408287	GA	G	690.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr18	28610901	rs34818241	G	GA	807.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr18	28610988	rs276938	C	T	3886.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr18	28611061	rs276937	A	T	5730.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr18	28611139	rs276936	A	C	3212.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.158;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.70;ReadPosRankSum=-0.347;SOR=0.368;set=HC	GT:AD:AF:DP	1/1:1,124:0.99:125
chr18	28654581	.	CA	C	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.912;ClippingRankSum=0.000;DP=21;ExcessHet=3.0103;FS=4.559;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.69;ReadPosRankSum=1.033;SOR=0.061;set=HC	GT:AD:AF:DP	0/1:13,7:0.35:20
chr18	28659724	rs1658128	T	C	733.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr18	28666526	rs35717505	T	TTAA	3661.73	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr18	28712686	rs1992143	A	G	723.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr18	28720147	rs17800159	C	T	10271.77	.	AC=2;AF=1.00;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	1/1:1,386:1.00:387
chr18	28721882	rs12455973	T	C	409.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr18	28721913	rs12458870	C	T	1130.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.49;SOR=3.098;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr18	28721922	rs12458919	G	A	1195.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.29;SOR=3.180;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr18	28722039	rs2577075	G	A	5045.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr18	28722103	rs2577074	T	C	6421.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr18	28723596	rs2577072	G	C	719.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr18	28723832	rs12454773	G	A	1714.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.28;QD=43.97;SOR=1.096;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr18	28723835	rs12454734	C	T	1714.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.28;QD=45.13;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr18	28723875	rs35474327	ATATT	A	748.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.42;QD=41.60;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr18	28728384	rs2577067	C	T	1812.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr18	28728411	rs3213883	C	T	2750.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr18	28728693	rs3217442	T	TA	1757.73	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:23,101:0.81:124
chr18	28734749	rs2249810	A	G	8976.77	.	AC=2;AF=1.00;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	1/1:0,352:1.00:352
chr18	28737198	rs2246736	C	T	720.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr18	28737299	rs2118342	T	G	2635.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr18	28739495	rs35550730	C	CA,CAA	937.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.925;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=1.897;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=13.40;ReadPosRankSum=-0.777;SOR=1.385;set=HC	GT:AD:AF:DP	1/2:14,38,18:0.54,0.26:70
chr18	28898201	rs1834582	A	G	5024.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr18	28898294	rs1426310	A	G	8449.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr18	28906460	rs57200666	TG	CA	556.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr18	28907096	rs765054	C	T	1456.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr18	28908090	rs2303465	G	A	3492.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr18	28913599	rs12967407	C	T	8096.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr18	28913929	rs5823800	TTC	T	2035.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr18	28916230	rs74277377	G	GAT	502.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr18	28916290	rs6506917	G	A	953.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr18	28923983	rs11660224	AT	CA	3356.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr18	28935375	rs8099566	C	T	1056.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr18	28966518	rs1460597	G	C	1145.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr18	28968371	rs16959856	G	A	7828.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr18	28968959	rs9956865	C	T	4467.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr18	28969008	rs16959863	C	T	2238.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr18	28986333	rs4799570	A	C	4230.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr18	28993183	rs12960081	A	G	16423.77	.	AC=2;AF=1.00;AN=2;DB;DP=635;set=Intersection	GT:AD:AF:DP	1/1:2,617:1.00:619
chr18	28993501	rs7234288	C	A	5314.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr18	29046398	rs2035042	G	A	1386.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr18	29049018	rs11660216	C	T	4676.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr18	29055957	rs1380866	A	G	5457.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr18	29101215	.	CT	C	186.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.360;ClippingRankSum=0.000;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.690;QD=1.41;ReadPosRankSum=-0.330;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:97,35:0.27:132
chr18	29206121	rs3764474	A	G	1266.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr18	29207155	rs1026123	C	T	4094.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:1,141:0.99:142
chr18	29211163	rs10657836	C	CT	466.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.741;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=1.890;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.38;ReadPosRankSum=-0.783;SOR=0.407;set=HC	GT:AD:AF:DP	0/1:8,33:0.80:41
chr18	29238076	rs67738912	CA	C	112.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.135;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.45;ReadPosRankSum=0.038;SOR=0.524;set=HC	GT:AD:AF:DP	0/1:53,25:0.32:78
chr18	29264182	rs1449081	G	A	807.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr18	29426552	rs34846731	A	C	1624.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.211;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=3.742;MLEAC=2;MLEAF=1.000;MQ=59.94;MQRankSum=0.000;QD=25.79;ReadPosRankSum=-1.023;SOR=2.419;set=HC	GT:AD:AF:DP	1/1:2,61:0.97:63
chr18	29426868	rs682279	A	T	937.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr18	29435778	rs34167680	T	TA	972.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.611;ClippingRankSum=0.000;DB;DP=245;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.62;ReadPosRankSum=-0.013;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:97,76:0.44:173
chr18	29447468	rs2291238	T	G	1203.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr18	29451174	rs8084584	T	A	242.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.35;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr18	29487596	rs4581778	T	A	1470.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.24;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr18	29497573	rs6506948	A	G	5112.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr18	29691962	.	G	GT	60.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.032;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=1.748;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=1.377;QD=2.09;ReadPosRankSum=-0.717;SOR=1.136;set=HC	GT:AD:AF:DP	0/1:20,9:0.31:29
chr18	29708981	rs684359	G	A	1892.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr18	29769822	rs72272189	G	GA	46.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.965;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.51;ReadPosRankSum=0.421;SOR=0.404;set=HC	GT:AD:AF:DP	0/1:23,8:0.26:31
chr18	29775226	rs3217505	TAC	T	151.73	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:18,8:0.31:26
chr18	29793526	rs335518	C	T	11507.77	.	AC=2;AF=1.00;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	1/1:2,427:1.00:429
chr18	29795076	rs173032	T	C	5235.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr18	29795101	rs233223	T	C	5255.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr18	29850296	rs6506966	G	A	1675.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr18	29972774	rs3786309	T	C	2516.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr18	30050356	rs11664566	C	T	5866.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr18	30275526	.	G	GA	160.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.071;ClippingRankSum=0.000;DP=190;ExcessHet=3.0103;FS=1.882;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.03;ReadPosRankSum=0.776;SOR=0.440;set=HC	GT:AD:AF:DP	0/1:126,30:0.19:156
chr18	30349691	rs17851892	C	T	6386.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr18	30351955	rs7234849	G	A	5364.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:1,204:1.00:205
chr18	30352057	rs200605696	GCGCCGGCC	G	9185.73	.	AC=2;AF=1.00;AN=2;DB;DP=262;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.23;QD=43.33;SOR=1.307;set=HC	GT:AD:AF:DP	1/1:0,212:1.00:212
chr18	30352098	.	AGCC	A	2980	.	AC=1;AF=0.500;AN=2;FR=0.5000;HP=2;HapScore=1;MGOF=52;MMLQ=24;MQ=60.19;NF=37;NR=67;PP=2980;QD=20;SC=CCCGGGGGAGAGCCGCCGCCG;SbPval=0.77;Source=Platypus;TC=186;TCF=76;TCR=110;TR=104;WE=30352108;WS=30352088;set=Platypus	GT:AD:AF:DP	1/0:82,104:0.56:186
chr18	30353181	rs111812993	C	T	2874.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.84;QD=23.96;SOR=0.796;set=HC	GT:AD:AF:DP	1/1:0,120:1.00:120
chr18	30563108	rs74667054	A	G	2305.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr18	30672631	rs1995096	G	A	933.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr18	30804756	rs466113	C	T	2719.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr18	30846895	rs9965081	A	T	1366.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr18	30950168	rs9965655	T	C	6054.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr18	30976968	rs4447495	C	G	332.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr18	30977255	rs6507018	G	A	757.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr18	31241788	.	A	ATTT	4624.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr18	31241789	.	GC	G	4624.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.19;SOR=3.080;set=HC	GT:AD:AF:DP	1/1:0,98:1.00:98
chr18	31241793	.	TCAGAAAGCA	TA,T	4237.73	.	AC=2,0;AF=1.00,0.00;ALERT;AN=2;DP=92;set=Intersection	GT:AF:DP	1/1:1.00:88
chr18	31241802	.	A	T	3796.77	.	AC=2;AF=1.00;ALERT;AN=2;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.67;SOR=3.030;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr18	31599259	rs10502615	T	C	1730.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr18	31709779	rs74933173	A	G	3679.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr18	32459704	rs2288085	A	G	4037.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr18	32461896	rs623966	A	G	791.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr18	32470291	rs9944927	G	A	3780.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr18	32470459	rs7227051	C	T	6341.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr18	32711965	rs3837890	G	GT	2241.73	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:2,100:0.98:102
chr18	32822382	rs4799374	G	T	1188.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:2,43:0.96:45
chr18	32823905	rs1054890	T	C	3476.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr18	32836089	rs4799376	T	C	442.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr18	32838807	rs7229055	T	C	620.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr18	32886528	rs147217916	T	TAGTC	3278.73	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr18	32887933	rs9963614	A	G	1357.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr18	32917644	rs2032729	T	C	6189.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr18	32917780	rs5823970	G	GA	894.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr18	32948446	.	T	TTTTATTTATTTATTTA	2773.73	.	AC=2;AF=1.00;AN=2;DP=175;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.06;QD=45.47;SOR=3.150;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr18	32948510	rs2909340	G	A	817.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr18	33048554	rs3088182	C	T	2125.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr18	33647254	rs1789517	A	C	12646.77	.	AC=2;AF=1.00;AN=2;DB;DP=460;set=Intersection	GT:AD:AF:DP	1/1:1,449:1.00:450
chr18	33694120	rs1050631	G	A	5050.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr18	33696772	rs1789504	A	C	2593.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr18	33706614	rs1789528	C	G	11790.77	.	AC=2;AF=1.00;AN=2;DB;DP=448;set=Intersection	GT:AD:AF:DP	1/1:0,436:1.00:436
chr18	33709762	rs1632169	G	C	4315.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr18	33713132	rs1785904	T	C	790.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr18	33713287	rs1785905	T	A	2521.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr18	33718326	rs1785934	A	C	3665.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:1,141:0.99:142
chr18	33719434	rs1785932	C	T	1732.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr18	33722425	rs1789549	A	G	1718.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr18	33725874	rs1789546	T	G	3573.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:1,133:0.99:134
chr18	33725931	rs1785928	G	A	4328.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:1,166:0.99:167
chr18	33726447	rs1785927	C	G	1166.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr18	33744677	rs684890	T	C	2136.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr18	33750046	rs8299	C	T	6817.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr18	33750314	rs637786	G	A	617.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr18	33767479	rs11665282	G	A	808.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr18	33767749	rs4267398	G	A	1376.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr18	33778607	rs596644	C	A	7473.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr18	33779821	rs646424	C	A	9547.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	1/1:0,347:1.00:347
chr18	33779855	rs623053	C	T	11512.77	.	AC=2;AF=1.00;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	1/1:0,428:1.00:428
chr18	33779896	rs540967	A	G	15960.77	.	AC=2;AF=1.00;AN=2;DB;DP=575;set=Intersection	GT:AD:AF:DP	1/1:0,570:1.00:570
chr18	33780020	rs623558	A	G	17977.77	.	AC=2;AF=1.00;AN=2;DB;DP=671;set=Intersection	GT:AD:AF:DP	1/1:0,667:1.00:667
chr18	33783030	rs579596	T	C	10676.77	.	AC=2;AF=1.00;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	1/1:0,395:1.00:395
chr18	33785093	rs678560	G	A	3169.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr18	33785185	rs667667	A	G	2929.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr18	33785304	rs667195	T	C	584.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr18	33793511	rs687387	T	C	796.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr18	33795425	rs631108	G	A	946.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr18	33800305	.	C	CA	63.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.684;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;FS=1.585;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.87;ReadPosRankSum=0.943;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:24,10:0.29:34
chr18	33848663	rs111317566	A	ATACAT	4168.73	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr18	33877687	rs188660514	T	C	3014.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr18	34174958	rs8087763	T	C	1393.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr18	34182800	rs34287129	A	G	2646.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:1,95:0.99:96
chr18	34205385	rs2644253	A	G	356.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr18	34229142	rs34031986	G	GT	121.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.622;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=4.039;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=1.820;QD=1.82;ReadPosRankSum=0.809;SOR=0.313;set=HC	GT:AD:AF:DP	0/1:51,16:0.24:67
chr18	34232610	rs2848901	C	T	4351.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr18	34232952	rs1893433	T	C	3162.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr18	34233231	rs1893434	C	T	8313.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:3,312:0.99:315
chr18	34297753	rs3809994	C	T	1782.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr18	34298732	rs7240383	G	C	2225.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr18	34310668	rs3744903	C	T	7519.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr18	34323855	rs11878091	T	C	1164.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr18	34324091	rs2303510	G	A	5261.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:4,204:0.98:208
chr18	34324190	rs2303509	C	T	1623.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:1,54:0.98:55
chr18	34398914	rs1045781	C	T	6959.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr18	34408969	rs9958080	C	G	806.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr18	34539578	rs3744904	A	G	438.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr18	35065374	rs5824066	CG	C	776.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr18	35065396	rs4799451	T	C	1097.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr18	35145660	rs138975334	T	TCTCG	2030.73	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:1,47:0.98:48
chr18	37201910	rs2852341	G	A	1212.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr18	39535169	rs3833864	T	TC	1379.73	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr18	39542407	rs33946724	GAT	G	4147.73	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr18	39584264	rs3819162	C	T	736.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr18	39584412	rs34205132	T	C	6566.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr18	39600755	rs8095411	A	G	215.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr18	39623942	rs534507	A	G	766.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr18	40323497	rs1804730	G	T	8461.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr18	40503735	rs10633642	G	GA	679.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.971;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=4.289;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=0.736;QD=8.39;ReadPosRankSum=0.171;SOR=0.303;set=HC	GT:AD:AF:DP	0/1:30,51:0.63:81
chr18	41559459	rs2588797	G	A	3444.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr18	42449305	rs647155	G	A	7420.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:2,276:0.99:278
chr18	42456653	rs663651	G	A	6512.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr18	42456670	rs3085861	C	CTCTT	10448.73	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr18	42533130	rs8096662	A	G	5662.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr18	43206985	rs1484873	A	G	1370.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr18	43221341	rs7233416	T	C	6254.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr18	43243679	rs8092227	A	G	868.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr18	43245986	rs7234198	T	G	2149.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr18	43246779	rs2170973	C	T	643.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr18	43247001	rs2156609	C	G	2733.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr18	43248504	rs6507631	T	C	9313.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.73;SOR=1.050;set=HC	GT:AD:AF:DP	1/1:0,213:1.00:213
chr18	43248509	rs10451385	T	C	9273.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.02;SOR=1.076;set=HC	GT:AD:AF:DP	1/1:0,206:1.00:206
chr18	43248578	rs9304319	C	A	2212.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr18	43252786	rs1531926	A	G	3029.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr18	43253100	rs1000501	C	T	1238.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr18	43262359	rs3745009	G	A	16174.77	.	AC=2;AF=1.00;AN=2;DB;DP=635;set=Intersection	GT:AD:AF:DP	1/1:2,627:1.00:629
chr18	43262501	rs3745008	C	T	3689.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr18	43262532	rs3745007	C	A	2387.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr18	43307455	rs3861806	C	T	1008.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr18	43310851	rs12963324	G	A	806.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr18	43314401	rs35812340	G	GA	615.87	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.697;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=2.476;MLEAC=2;MLEAF=1.000;MQ=60.44;MQRankSum=0.634;QD=15.40;ReadPosRankSum=0.298;SOR=0.180;set=HC	GT:AD:AF:DP	1/1:5,35:0.88:40
chr18	43319060	rs473429	T	C	4641.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr18	43319359	rs531281	C	T	2213.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr18	43328295	rs474270	G	A	7829.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr18	43405792	rs1440822	T	C	8445.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:1,325:1.00:326
chr18	43419003	rs2919643	T	C	7111.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr18	43422280	rs500899	T	C	487.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr18	43432358	rs508915	A	C	1428.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr18	43435738	rs514001	A	C	1656.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr18	43438156	rs567801	C	T	218.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr18	43446734	rs3826633	T	C	4804.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr18	43450753	rs11334955	TA	T	151.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.285;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.76;ReadPosRankSum=-1.309;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:34,21:0.38:55
chr18	43456075	rs9950550	C	T	1095.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr18	43487885	.	T	TA	53.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.937;ClippingRankSum=0.000;DP=42;ExcessHet=3.0103;FS=5.926;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.34;ReadPosRankSum=-1.443;SOR=0.525;set=HC	GT:AD:AF:DP	0/1:31,9:0.23:40
chr18	43495416	rs7237763	G	T	1606.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr18	43505558	rs4476262	C	G	2072.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr18	43519825	rs72918362	C	T	520.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr18	43523312	rs3745000	G	A	3842.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr18	43524145	rs75005183	C	A	3328.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:1,112:0.99:113
chr18	43534824	rs59422275	T	C	9887.77	.	AC=2;AF=1.00;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	1/1:0,368:1.00:368
chr18	43547127	rs11301517	TG	T	6654.73	.	AC=2;AF=1.00;AN=2;DB;DP=220;MQ=60.05;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr18	43572222	rs78858602	C	T	4226.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr18	43578844	rs73438238	T	C	7650.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr18	43585536	rs9675392	A	C	1625.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr18	43595802	rs73438258	C	T	3581.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:1,134:0.99:135
chr18	43595850	rs11349070	TA	T	3757.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.910;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.33;MQRankSum=0.379;QD=19.67;ReadPosRankSum=0.409;SOR=0.759;set=HC	GT:AD:AF:DP	1/1:4,187:0.98:191
chr18	43652203	rs8085444	G	A	4460.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:2,166:0.99:168
chr18	43652345	rs3745002	A	G	1121.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr18	43666861	rs8095031	T	C	2089.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr18	43666952	rs8097521	C	A	4596.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr18	43667528	rs7244921	T	C	1291.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr18	43668321	rs11659795	G	T	744.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr18	43669980	rs2298787	T	C	11233.77	.	AC=2;AF=1.00;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	1/1:1,400:1.00:401
chr18	43674879	rs28699609	A	T	562.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr18	43678024	rs56181324	G	A	1865.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr18	43678035	rs3753069	T	C	2384.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr18	43678328	rs143002048	ACC	A	2354.73	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.05;SOR=7.523;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr18	43678333	.	CT	C	106.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.040;ClippingRankSum=0.000;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.22;ReadPosRankSum=-1.550;SOR=0.083;set=HC	GT:AD:AF:DP	0/1:39,9:0.19:48
chr18	43678334	.	T	C	745.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.632;ClippingRankSum=0.000;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.87;ReadPosRankSum=1.409;SOR=1.814;set=HC	GT:AD:AF:DP	0/1:14,33:0.70:47
chr18	43678334	.	TCT	CCC	996	.	AC=2;AF=1.00;AN=2;BRF=0.49;FR=1.0000;HP=3;HapScore=1;MGOF=25;MMLQ=26;MQ=59.72;NF=0;NR=51;PP=996;QD=20.5778014679;SC=GTTCACCACCTCTCCCCCCGC;SbPval=1.0;Source=Platypus;TC=66;TCF=0;TCR=66;TR=51;WE=43678344;WS=43678318;set=Platypus	GT:AD:AF:DP	1/1:15,51:0.77:66
chr18	43678336	.	T	C	918.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.353;ClippingRankSum=0.000;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.55;ReadPosRankSum=1.616;SOR=3.033;set=HC	GT:AD:AF:DP	0/1:8,39:0.83:47
chr18	43698309	rs1866321	C	T	1276.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr18	43702733	rs9965812	C	T	1549.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr18	43703223	rs12954742	C	G	599.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:1,21:0.95:22
chr18	43833701	rs34068795	T	TCTG	5951.73	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr18	43914438	rs8084936	A	C	3107.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:3,104:0.97:107
chr18	44063598	rs1377016	G	A	4651.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr18	44098079	rs59128481	C	T	2391.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr18	44100470	rs75572674	C	T	619.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr18	44104437	rs12606417	T	C	11216.77	.	AC=2;AF=1.00;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	1/1:0,421:1.00:421
chr18	44104650	rs12604163	C	T	8365.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:2,296:0.99:298
chr18	44114473	rs436433	T	C	7228.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr18	44122010	rs10775482	T	C	2448.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr18	44122948	rs76922429	T	G	1262.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr18	44126909	rs1893566	T	C	9909.77	.	AC=2;AF=1.00;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	1/1:2,365:0.99:367
chr18	44135027	rs732108	A	G	3219.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr18	44135143	rs11665444	T	C	4494.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr18	44138902	rs4243280	C	T	2764.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr18	44149474	rs2086005	G	A	4639.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr18	44157489	rs328167	G	T	526.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr18	44157506	rs328166	G	T	900.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr18	44173449	rs328145	A	C	877.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr18	44181596	rs674948	G	A	1420.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr18	44221732	.	A	G	1541.77	.	AC=2;AF=1.00;AN=2;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr18	44272034	rs533027	A	C	1802.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr18	44560300	rs3744863	C	T	1237.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr18	44560429	rs892586	C	A	3688.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr18	44560875	rs2010834	C	A	10854.77	.	AC=2;AF=1.00;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	1/1:5,402:0.99:407
chr18	44561100	rs2571028	C	G	878.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:1,31:0.97:32
chr18	44561516	rs2571027	C	G	431.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.55;QD=23.99;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr18	44580919	rs2576041	C	T	2890.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr18	44585955	rs7233515	G	A	3780.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr18	44635048	rs2635058	C	T	4940.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr18	44693424	.	G	GT	87.19	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.157;ClippingRankSum=-0.000;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=10.90;ReadPosRankSum=1.534;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:1,7:0.88:8
chr18	44771419	.	A	AT	202.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.074;ClippingRankSum=0.000;DP=255;ExcessHet=3.0103;FS=0.732;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=0.000;QD=1.05;ReadPosRankSum=0.614;SOR=0.774;set=HC	GT:AD:AF:DP	0/1:153,41:0.21:194
chr18	44771849	.	ATT	A,AT	1206.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=2.218;ClippingRankSum=0.000;DP=113;ExcessHet=3.0103;FS=2.888;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.19;MQRankSum=0.410;QD=12.57;ReadPosRankSum=0.234;SOR=0.561;set=HC	GT:AD:AF:DP	1/2:10,33,53:0.34,0.55:96
chr18	45371695	rs72661148	A	G	6724.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr18	45395845	rs34501809	TA	T	525.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.602;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.62;ReadPosRankSum=-0.522;SOR=0.570;set=HC	GT:AD:AF:DP	0/1:20,49:0.71:69
chr18	45567050	rs71355329	G	A	2274.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr18	45691715	rs9646522	T	C	1515.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr18	45711740	rs12455480	T	C	4851.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr18	46196856	rs3830253	AC	A	1055.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr18	46196880	rs2279304	T	G	1679.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr18	46284587	rs1038308	T	C	9801.77	.	AC=2;AF=1.00;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	1/1:0,363:1.00:363
chr18	46284840	rs4556859	T	C	2769.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr18	46468946	rs3764482	G	A	8455.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.091;ClippingRankSum=0.000;DB;DP=332;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.26;ReadPosRankSum=0.057;SOR=0.300;set=HC	GT:AD:AF:DP	1/1:1,321:1.00:322
chr18	46474797	rs145686330	G	T	4144.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:1,152:0.99:153
chr18	46798417	rs476044	A	T	235.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr18	47013723	rs6417105	A	T	7582.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr18	47014953	rs35737964	G	GTGT	11166.73	.	AC=2;AF=1.00;AN=2;DB;DP=247;MQ=60.04;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr18	47015609	rs36084909	G	GA	1875.73	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr18	47016046	rs6507920	A	G	2184.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr18	47017820	rs1943676	A	G	4787.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr18	47088655	rs34474737	T	G	1020.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr18	47088826	rs35978968	C	T	4181.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.49;SOR=0.736;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr18	47088830	rs35816125	C	G	4157.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.71;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr18	47093790	rs2000812	C	T	3746.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr18	47093864	rs2000813	C	T	5258.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr18	47102002	rs2276269	T	C	2789.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr18	47113008	rs6507931	C	T	2021.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr18	47310486	rs75478873	C	CA	383.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr18	47320850	rs34944087	AAT	A	1021.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.83;QD=40.87;SOR=1.136;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr18	47376128	rs490697	A	G	2183.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr18	47398504	rs3826580	T	C	1759.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr18	47398549	rs3826579	G	A	3666.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr18	47401935	rs2276172	C	T	2805.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr18	47401999	rs2276173	A	T	6222.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:1,233:1.00:234
chr18	47402280	rs657424	A	C	892.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr18	47404399	rs2276175	A	G	1838.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr18	47405304	rs2276176	A	G	2871.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr18	47405425	rs3841750	T	TGAG	12064.73	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr18	47405525	rs4939602	T	C	7075.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.26;QD=43.68;SOR=1.777;set=HC	GT:AD:AF:DP	1/1:0,162:1.00:162
chr18	47405530	rs4939603	C	T	6825.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.28;QD=45.51;SOR=1.790;set=HC	GT:AD:AF:DP	1/1:0,150:1.00:150
chr18	47406943	rs2276177	T	G	2564.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr18	47429022	rs2298624	C	T	8373.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr18	47455980	rs56278513	GA	G	345.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.994;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.55;MQRankSum=0.832;QD=9.88;ReadPosRankSum=-1.064;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:7,28:0.80:35
chr18	47463587	rs1790797	A	G	2334.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr18	47463872	rs1787519	A	G	3518.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:1,125:0.99:126
chr18	47480660	rs1787299	G	A	5063.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr18	47489430	rs58191032	G	A	5074.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:2,188:0.99:190
chr18	47489480	rs16951327	C	T	3534.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:2,125:0.98:127
chr18	47563299	rs1815930	T	C	7804.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr18	47583036	rs2852104	C	A	3835.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr18	47765121	rs35839946	G	C	2661.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr18	47777244	rs35193847	C	T	7693.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:3,291:0.99:294
chr18	47778172	rs35295154	A	G	7003.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr18	47787402	rs1899671	G	A	1957.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.46;SOR=1.288;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr18	47787622	rs71169499	CAA	C	186	.	AC=2;AF=1.00;AN=2;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.67;MQRankSum=0.632;QD=16.91;SOR=3.442;set=HC	GT:AD:AF:DP	1/1:1,10:0.91:11
chr18	47788256	rs698617	C	T	862.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr18	47801800	rs140690	G	A	6428.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr18	47802971	rs10775495	A	G	5426.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr18	47809871	rs12458654	G	T	7562.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:2,294:0.99:296
chr18	47810351	rs7228084	A	G	10263.77	.	AC=2;AF=1.00;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	1/1:0,372:1.00:372
chr18	47810731	rs2276367	T	C	1644.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr18	47811305	rs2276366	T	G	10707.77	.	AC=2;AF=1.00;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	1/1:2,385:0.99:387
chr18	47811374	rs17660776	G	A	12622.77	.	AC=2;AF=1.00;AN=2;DB;DP=478;set=Intersection	GT:AD:AF:DP	1/1:2,471:1.00:473
chr18	47902337	rs1970679	A	G	1399.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr18	47906416	rs1441293	A	G	429.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr18	47906690	rs1441294	T	C	1320.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr18	47906719	rs1441295	T	G	746.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr18	47908556	rs6507992	G	A	2651.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr18	47917735	rs2044012	A	C	1207.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr18	47918639	rs10460085	A	C	4044.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr18	48326378	rs2586778	G	T	2994.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr18	48327815	rs2276186	G	A	3141.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr18	48333203	rs4940019	C	G	4745.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr18	48346024	rs3813089	G	T	7837.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:1,297:1.00:298
chr18	48577782	rs7229678	G	C	1006.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr18	48584855	rs57847829	A	ATT	1162.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.424;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=4.429;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.36;ReadPosRankSum=0.800;SOR=1.885;set=HC	GT:AD:AF:DP	0/1:17,70:0.80:87
chr18	48723145	rs147438518	CGCCGCCGCG	C	9565.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.320;ClippingRankSum=0.000;DB;DP=286;ExcessHet=3.0103;FS=1.450;MLEAC=2;MLEAF=1.000;MQ=60.90;MQRankSum=0.690;QD=41.59;ReadPosRankSum=-1.168;SOR=0.572;set=HC	GT:AD:AF:DP	1/1:7,223:0.97:230
chr18	48723217	rs35675106	C	T	6732.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr18	48723439	rs4396619	C	T	2135.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr18	48991891	rs7241264	G	A	5288.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:2,194:0.99:196
chr18	49867224	rs9951523	T	C	5274.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr18	50450240	rs2276204	T	G	5015.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr18	50451821	rs2298654	T	G	3985.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr18	50589905	rs57166441	G	GA	508.94	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.522;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=6.864;MLEAC=1;MLEAF=0.500;MQ=60.42;MQRankSum=0.783;QD=12.72;ReadPosRankSum=1.962;SOR=4.174;set=HC	GT:AD:AF:DP	0/1:7,33:0.82:40
chr18	50731802	rs7227069	G	A	3211.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr18	50731823	rs2298606	T	C	4062.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.16;SOR=1.880;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr18	50731829	rs4497763	A	G	3965.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.56;SOR=1.890;set=HC	GT:AD:AF:DP	1/1:0,89:1.00:89
chr18	50832102	rs1431196	A	G	4108.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr18	50912352	rs3764496	T	C	3762.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr18	50917982	rs12604262	C	T	6193.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr18	50918311	rs1393331	A	G	2911.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr18	50923932	rs7231978	G	T	2068.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr18	50936780	rs10853631	G	A	979.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr18	50936994	rs2229082	T	C	7526.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr18	50937026	rs11873515	A	G	5388.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr18	50942653	rs2270951	C	T	8534.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:1,321:1.00:322
chr18	50994208	rs1502229	G	T	2019.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr18	51053176	rs17515923	T	G	2438.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr18	51053218	rs113173464	T	TCACCCCAGGC	2838.73	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr18	51053235	.	A	AGGCCACCCCC	2980	.	AC=1;AF=0.500;AN=2;BRF=0.46;FR=0.5000;HP=4;HapScore=1;MGOF=28;MMLQ=28;MQ=60.0;NF=2;NR=19;PP=2980;QD=20;SC=AGGCCACCCCAGGCCATTGTT;SbPval=0.33;Source=Platypus;TC=36;TCF=2;TCR=34;TR=21;WE=51053243;WS=51053225;set=Platypus	GT:AD:AF:DP	1/0:15,21:0.58:36
chr18	51731308	rs140691	G	A	1938.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr18	51795847	rs3730668	G	T	1081.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr18	51795957	rs10584411	GCGA	G	3361.73	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr18	51820805	rs8305	G	A	4212.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr18	51851090	rs147831274	C	T	2703.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:1,105:0.99:106
chr18	51904461	rs35286005	C	CTTTA	1627.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr18	51904498	rs3753057	G	A	2676.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr18	52551370	.	T	TA	165.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.311;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.91;ReadPosRankSum=1.568;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:42,15:0.26:57
chr18	52555398	rs4343367	G	A	4597.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr18	52571741	rs4801110	C	T	2010.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr18	52575002	rs1944382	G	A	6001.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr18	52585071	rs59686916	G	GAC	369.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.718;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.22;ReadPosRankSum=-1.673;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:9,17:0.65:26
chr18	52608329	rs8087479	C	A	3055.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr18	52895531	rs8766	T	C	6258.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr18	52895657	rs10221362	C	T	1511.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr18	52921606	rs1539950	C	T	316.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr18	52921673	rs1539951	T	C	1470.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr18	52922000	rs62092442	T	C	715.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr18	52942827	rs1788027	G	A	2740.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr18	53070914	rs17522826	G	A	3619.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr18	53131202	rs143184224	TGTGTGTGA	T	473.73	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:17,23:0.57:40
chr18	53131488	rs3760600	C	A	381.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr18	53146303	rs2924331	T	C	70.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr18	53252388	rs599550	G	A	591.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr18	53302845	rs610362	C	T	1490.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr18	53303101	rs611326	C	G	4017.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr18	53727502	rs2535724	T	C	5633.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr18	54283362	rs35834292	CA	C	88.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.695;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.03;ReadPosRankSum=0.323;SOR=0.375;set=HC	GT:AD:AF:DP	0/1:11,11:0.50:22
chr18	54293843	rs11664091	C	T	970.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr18	54339818	rs568078	C	G	6912.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr18	54339977	rs566956	A	G	1316.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr18	54346482	rs683248	T	G	1445.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr18	54346510	rs597585	G	A	2216.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr18	54346745	rs11452823	A	AT	1550.73	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:5,76:0.94:81
chr18	54346804	rs525682	T	G	949.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr18	54348514	rs605067	C	T	3376.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr18	54348650	rs474607	T	C	1307.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr18	54353382	rs609195	A	T	1291.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr18	54354074	rs1943016	C	T	3186.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr18	54354076	rs5825199	T	TTC	3243.73	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr18	54354239	rs576095	T	C	1358.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr18	54359062	rs2110414	G	A	745.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr18	54363747	rs1468742	A	G	253.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr18	54426267	rs74182159	ATTTG	A	1869.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr18	54483146	rs3745038	A	G	955.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr18	54605919	rs78895434	A	C	5780.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr18	54694452	rs3745033	C	T	10671.77	.	AC=2;AF=1.00;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	1/1:0,392:1.00:392
chr18	54815025	rs11151997	G	T	4075.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr18	55019963	.	TCA	T	166.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.115;ClippingRankSum=0.000;DP=104;ExcessHet=3.0103;FS=1.219;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.17;ReadPosRankSum=1.629;SOR=0.904;set=HC	GT:AD:AF:DP	0/1:63,14:0.18:77
chr18	55143589	rs618953	A	G	2658.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr18	55240455	rs577152	T	C	2527.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr18	55253710	rs317815	G	A	2968.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr18	55287739	rs388644	A	C	1319.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr18	55288007	rs389031	G	A	1047.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr18	55288879	rs368935	A	G	3339.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr18	55309018	rs385648	C	T	227.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr18	55317676	rs222581	C	T	7473.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr18	55334295	rs4306606	G	A	10374.77	.	AC=2;AF=1.00;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	1/1:1,393:1.00:394
chr18	55335240	rs4940499	A	G	2200.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr18	55335495	rs317844	A	G	3617.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr18	55335786	.	T	TAAA,TAAAA	1828.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.765;ClippingRankSum=0.000;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.59;MQRankSum=0.000;QD=32.66;ReadPosRankSum=0.260;SOR=0.560;set=HC	GT:AD:AF:DP	1/2:1,23,32:0.41,0.57:56
chr18	55338866	rs35718397	A	T	3667.73	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:3,155:0.98:158
chr18	55352436	rs319459	G	A	4488.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;MQ=60.06;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr18	55352470	rs143958246	TTTA	T	4225.73	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr18	55362532	rs319443	T	G	3221.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr18	55362816	rs319442	G	A	585.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr18	55364852	rs319438	A	G	3013.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:1,117:0.99:118
chr18	55397512	rs319432	T	G	2009.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr18	55397624	rs33964473	GATA	G	10519.73	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr18	55397674	rs319433	G	C	7322.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr18	55397871	rs319434	T	C	9660.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:0,346:1.00:346
chr18	55398604	rs12606419	T	C	1108.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.20;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr18	55398604	.	TAT	CAC	989	.	AC=2;AF=1.00;AN=2;BRF=0.27;FR=1.0000;HP=2;HapScore=1;MGOF=82;MMLQ=26;MQ=60.0;NF=22;NR=5;PP=989;QD=38.6099212912;SC=TATATATATATATACACACAC;SbPval=0.54;Source=Platypus;TC=28;TCF=23;TCR=5;TR=27;WE=55398614;WS=55398594;set=Platypus	GT:AD:AF:DP	1/1:1,27:0.96:28
chr18	55398606	rs12606420	T	C	1110.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.72;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr18	55398756	rs651867	T	C	6258.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr18	55686257	rs17755149	G	A	5657.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:4,218:0.98:222
chr18	55711867	rs113358301	C	T	5415.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr18	56008148	rs4149609	A	G	1123.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr18	56024396	rs10543922	AT	A	523.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.392;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=0.685;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.89;ReadPosRankSum=2.657;SOR=0.583;set=HC	GT:AD:AF:DP	0/1:111,70:0.39:181
chr18	56040649	rs1943994	T	C	4643.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr18	56054616	rs5825274	AT	A	721.92	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.171;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.39;MQRankSum=0.625;QD=12.89;ReadPosRankSum=2.459;SOR=0.653;set=HC	GT:AD:AF:DP	1/1:7,49:0.88:56
chr18	56118493	rs17669	C	T	1702.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr18	56149048	rs3744867	A	G	2903.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr18	56149099	rs7240666	T	C	6135.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr18	56182174	rs7505023	T	C	1685.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr18	56182507	rs4940399	C	G	1687.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr18	56191351	rs7228617	C	T	949.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr18	56196451	rs7236563	C	T	4843.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr18	56202059	rs10469211	A	G	8175.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr18	56202418	rs10469212	T	C	9230.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:0,327:1.00:327
chr18	56202768	rs3809983	C	A	7998.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr18	56202982	rs3826594	A	T	7346.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:2,263:0.99:265
chr18	56203074	rs3809982	G	A	5201.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr18	56203120	rs3809981	C	T	5810.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr18	56203411	rs3809980	G	C	6761.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:1,249:1.00:250
chr18	56203447	rs3809979	A	G	6936.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:2,250:0.99:252
chr18	56203891	rs3809978	G	T	10178.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.26;SOR=0.783;set=HC	GT:AD:AF:DP	1/1:0,230:1.00:230
chr18	56203898	rs3809977	T	G	10145.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.50;SOR=0.803;set=HC	GT:AD:AF:DP	1/1:0,228:1.00:228
chr18	56204250	rs3809976	A	C	9779.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	1/1:0,358:1.00:358
chr18	56204387	rs67925233	ACAGTTGATGTGTCCT	A	11468.73	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr18	56204410	rs55910046	C	T	11766.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr18	56204671	rs4940404	A	T	2872.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr18	56204747	rs3826593	G	A	2691.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr18	56204932	rs3809973	T	G	8134.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr18	56204945	rs3809972	C	G	8649.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,318:1.00:318
chr18	56204977	rs3809971	C	T	9822.77	.	AC=2;AF=1.00;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	1/1:0,361:1.00:361
chr18	56204991	rs3809970	C	T	10452.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	1/1:0,381:1.00:381
chr18	56205262	rs12103986	A	C	15302.77	.	AC=2;AF=1.00;AN=2;DB;DP=562;set=Intersection	GT:AD:AF:DP	1/1:0,554:1.00:554
chr18	56205481	rs9962203	G	A	2961.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr18	56205551	rs9962964	C	T	806.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr18	56245965	.	G	GACACACACACACACACACACAC	595.73	.	AC=2;AF=1.00;AN=2;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=74.47;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr18	56274514	rs6566986	A	G	5613.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr18	56274720	rs113295953	GA	G	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.079;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=1.100;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.44;ReadPosRankSum=-0.549;SOR=0.907;set=HC	GT:AD:AF:DP	0/1:72,17:0.19:89
chr18	56279025	rs6566987	T	G	990.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.27;MQRankSum=0.324;QD=25.40;ReadPosRankSum=-0.223;SOR=0.446;set=HC	GT:AD:AF:DP	1/1:1,38:0.97:39
chr18	56383323	rs9959997	T	C	334.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr18	56400826	rs28740963	T	C	907.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr18	56587967	rs66553426	CGTGTGTGT	C	242.52	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.036;ClippingRankSum=-0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.16;MQRankSum=0.126;QD=24.25;ReadPosRankSum=1.036;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:1,9:0.90:10
chr18	56646583	rs35743757	A	AAAAT	636.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr18	56648756	rs61733373	C	T	1264.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr18	56703194	rs9961940	A	C	3366.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr18	56711225	rs11152115	A	C	1267.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr18	56711284	rs11152116	C	T	2759.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr18	56887507	rs1062557	C	A	1552.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr18	57000303	rs2298712	G	A	2684.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:1,97:0.99:98
chr18	57000518	.	G	GT	72.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.127;ClippingRankSum=0.000;DP=74;ExcessHet=3.0103;FS=3.093;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.23;ReadPosRankSum=-0.156;SOR=0.270;set=HC	GT:AD:AF:DP	0/1:46,13:0.22:59
chr18	57014812	rs11354119	TA	T	150.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.400;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=4.796;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.08;ReadPosRankSum=-0.189;SOR=0.219;set=HC	GT:AD:AF:DP	0/1:32,17:0.35:49
chr18	57115133	rs3809990	T	C	698.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr18	57115203	rs1893788	T	C	2790.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr18	57115490	rs749999	T	A	734.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr18	57134152	rs4940876	A	G	1385.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr18	57147351	rs1663548	G	A	540.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr18	57147390	rs1790508	C	G	1137.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr18	57364089	rs3114280	G	C	424.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr18	57567638	rs11663656	G	C	2886.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr18	57638330	rs10871774	G	A	5098.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr18	59157764	rs680530	T	C	8534.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr18	59158065	rs681902	T	G	1215.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.95;SOR=2.531;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr18	59166541	rs12964819	C	T	3142.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr18	59166762	.	T	TACAC	592.73	.	AC=2;AF=1.00;AN=2;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.77;QD=42.34;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr18	59170304	rs595093	C	G	5933.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr18	59174817	rs1547956	C	A	1399.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr18	59206481	rs72995650	G	A	2714.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:2,91:0.98:93
chr18	59212511	.	ATT	A	564.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.933;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.82;ReadPosRankSum=-1.159;SOR=0.582;set=HC	GT:AD:AF:DP	1/1:7,23:0.77:30
chr18	59217172	rs72995672	C	T	3801.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr18	59221550	rs34667496	G	A	9693.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:0,350:1.00:350
chr18	59805532	rs9959632	T	C	1863.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr18	59942586	rs112272563	G	GT	59.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.576;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.43;ReadPosRankSum=0.783;SOR=0.625;set=HC	GT:AD:AF:DP	0/1:114,25:0.18:139
chr18	59942746	.	A	AT	58.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.539;ClippingRankSum=0.000;DP=132;ExcessHet=3.0103;FS=2.512;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.61;ReadPosRankSum=-0.992;SOR=1.177;set=HC	GT:AD:AF:DP	0/1:79,17:0.18:96
chr18	59992547	rs7238731	G	A	55.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.43;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr18	59992577	rs1805033	T	C	56.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr18	60036083	rs8092336	A	G	7630.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr18	60190786	.	C	CCCG	53.70	.	AC=2;AF=1.00;AN=2;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.85;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr18	60191428	rs7229802	G	A	9100.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:0,341:1.00:341
chr18	60232405	rs4940561	C	T	1592.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr18	60237388	rs8096750	A	G	4870.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr18	60241732	rs3744926	C	T	11012.77	.	AC=2;AF=1.00;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	1/1:0,391:1.00:391
chr18	60243876	rs11557713	G	A	8221.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.59;SOR=1.298;set=HC	GT:AD:AF:DP	1/1:0,298:1.00:298
chr18	60612536	rs525092	T	G	3621.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr18	60630531	rs547690	T	C	3358.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr18	60985879	rs1801018	T	C	18019.77	.	AC=2;AF=1.00;AN=2;DB;DP=712;set=Intersection	GT:AD:AF:DP	1/1:1,697:1.00:698
chr18	61022634	rs1809319	T	C	6071.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr18	61022791	rs2003149	C	T	3032.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:2,110:0.98:112
chr18	61034175	rs427065	A	G	3591.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.93;SOR=4.103;set=HC	GT:AD:AF:DP	1/1:0,120:1.00:120
chr18	61058458	rs60460382	C	G	102.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr18	61060873	rs898890	G	A	754.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr18	61066463	rs2276317	A	G	3625.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:2,138:0.99:140
chr18	61067959	rs952245	T	C	4695.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:1,187:0.99:188
chr18	61078888	rs11383277	G	GT,GTT	1153.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.661;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=4.812;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.84;MQRankSum=0.925;QD=17.75;ReadPosRankSum=-0.141;SOR=0.191;set=HC	GT:AD:AF:DP	1/2:8,40,17:0.62,0.26:65
chr18	61151659	rs77710366	G	T	1839.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr18	61154351	rs2271253	T	C	1079.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr18	61156499	rs17071181	T	C	1375.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr18	61156606	rs12454742	G	C	6257.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:2,228:0.99:230
chr18	61160287	rs2289519	T	C	10778.77	.	AC=2;AF=1.00;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	1/1:0,395:1.00:395
chr18	61160320	rs2289520	G	C	8499.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr18	61166269	rs56208842	C	T	1247.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.03;SOR=1.071;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr18	61166273	rs12458191	C	T	1247.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.03;SOR=1.071;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr18	61166280	.	G	GTATA,GTATATATA	878.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.809;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=33.80;ReadPosRankSum=0.080;SOR=0.693;set=HC	GT:AD:AF:DP	1/2:3,9,14:0.35,0.54:26
chr18	61170467	rs1840557	G	A	689.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr18	61170500	rs1455557	T	C	934.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr18	61170721	rs1455556	T	C	8542.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:0,318:1.00:318
chr18	61170782	rs1455555	A	G	8974.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:0,327:1.00:327
chr18	61170925	rs8093128	T	C	5242.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr18	61225801	rs7244584	C	T	5343.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr18	61226694	rs11152391	G	A	955.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr18	61226740	rs12103954	G	A	2130.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr18	61228248	rs9676250	T	C	632.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr18	61231143	rs33927218	AAAAAT	A	553.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.089;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.84;MQRankSum=-1.201;QD=8.79;ReadPosRankSum=0.628;SOR=0.574;set=HC	GT:AD:AF:DP	0/1:22,41:0.65:63
chr18	61231417	rs9957786	A	G	4430.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr18	61233739	rs2077549	T	C	760.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr18	61254525	rs3216123	A	AT	3292.73	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:1,138:0.99:139
chr18	61256117	rs77936810	GC	G	1385.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.45;SOR=4.977;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr18	61261515	rs11152394	T	C	10180.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr18	61261540	rs11152395	T	C	10550.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr18	61261565	rs11152396	C	G	8849.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr18	61264298	rs1020694	G	A	6849.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr18	61264468	rs1020693	C	T	18897.77	.	AC=2;AF=1.00;AN=2;DB;DP=702;set=Intersection	GT:AD:AF:DP	1/1:0,696:1.00:696
chr18	61271065	rs7229459	G	A	1106.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr18	61308355	.	G	C	337.77	.	AC=1;AF=0.500;AN=2;DP=31;set=Intersection	GT:AD:AF:DP	0/1:18,13:0.42:31
chr18	61308368	.	A	T	385.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.381;ClippingRankSum=0.000;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.27;MQRankSum=-0.957;QD=16.77;ReadPosRankSum=-1.336;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:12,11:0.48:23
chr18	61308373	.	T	C	355.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.980;ClippingRankSum=0.000;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.20;MQRankSum=-0.953;QD=16.94;ReadPosRankSum=-1.462;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:11,10:0.48:21
chr18	61308393	.	G	C	112.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.559;ClippingRankSum=-0.000;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.70;MQRankSum=-1.020;QD=8.67;ReadPosRankSum=-1.441;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:9,4:0.31:13
chr18	61308397	.	A	G	112.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.444;ClippingRankSum=-0.000;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.70;MQRankSum=-1.020;QD=8.67;ReadPosRankSum=-1.441;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:9,4:0.31:13
chr18	61308400	.	T	C	112.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.164;ClippingRankSum=-0.000;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.31;MQRankSum=-1.282;QD=11.28;ReadPosRankSum=-1.061;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:8,2:0.20:10
chr18	61308895	rs2518061	A	G	8850.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr18	61326505	rs8089032	T	A	5818.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr18	61326597	rs8085479	A	C	17464.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.66;QD=45.48;SOR=0.802;set=HC	GT:AD:AF:DP	1/1:0,384:1.00:384
chr18	61326602	rs8085482	A	G	18034.77	.	AC=2;AF=1.00;AN=2;DB;DP=392;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.69;QD=46.12;SOR=0.740;set=HC	GT:AD:AF:DP	1/1:0,391:1.00:391
chr18	61326609	rs8089201	T	G	18137.77	.	AC=2;AF=1.00;AN=2;DB;DP=413;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.71;QD=44.02;SOR=0.753;set=HC	GT:AD:AF:DP	1/1:0,412:1.00:412
chr18	61326628	rs11370831	A	AT	12971.73	.	AC=2;AF=1.00;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	1/1:0,411:1.00:411
chr18	61377579	rs1395268	A	C	4707.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr18	61383181	rs8087185	A	C	505.80	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:1,17:0.94:18
chr18	61387993	rs12607732	T	C	199.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr18	61390316	rs1395265	C	A	6180.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:2,225:0.99:227
chr18	61390332	rs1395266	C	T	6448.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:1,234:1.00:235
chr18	61390361	rs1395267	T	C	7106.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr18	61390570	rs953695	T	G	5928.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr18	61390649	rs953696	C	T	2930.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr18	61391228	rs2089318	T	C	4714.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.79;SOR=0.863;set=HC	GT:AD:AF:DP	1/1:0,176:1.00:176
chr18	61391323	rs147160513	CTCT	C	2920.73	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.95;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr18	61391449	rs144614464	C	CTCTTCT	1331.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.96;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr18	61391505	rs144622175	CTCT	C	4920.73	.	AC=2;AF=1.00;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=64.11;QD=37.28;SOR=0.723;set=HC	GT:AD:AF:DP	1/1:0,132:1.00:132
chr18	61391697	rs12326861	A	G	4882.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr18	61393442	rs9965604	T	C	819.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr18	61393644	rs1893563	T	A	2516.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr18	61394300	rs8097334	C	T	4658.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr18	61394403	rs8098025	A	G	6755.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr18	61394522	rs6567386	A	G	1021.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr18	61471529	rs61735186	C	T	3521.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr18	61602360	rs35453062	G	A	8459.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:1,310:1.00:311
chr18	61650865	rs11537989	G	A	7505.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr18	61654329	rs3744958	C	T	10136.77	.	AC=2;AF=1.00;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	1/1:2,368:0.99:370
chr18	61766039	rs2613658	C	T	1359.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr18	63430340	rs2276190	G	A	1141.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.91;SOR=1.697;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr18	63430344	rs2276191	T	G	1141.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.91;SOR=1.697;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr18	63477317	rs11332924	GA	G	707.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.240;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.40;MQRankSum=0.880;QD=11.60;ReadPosRankSum=0.375;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:10,51:0.84:61
chr18	63489378	rs8097752	C	T	8574.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr18	63491797	rs974080	A	G	3111.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:1,119:0.99:120
chr18	63511176	rs2306675	T	C	6789.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:1,258:1.00:259
chr18	63527083	rs8091515	C	T	2981.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.097;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=40.29;ReadPosRankSum=1.918;SOR=1.048;set=HC	GT:AD:AF:DP	1/1:3,71:0.96:74
chr18	63527083	.	CGA	TGT	2533	.	AC=2;AF=1.00;AN=2;BRF=0.38;FR=1.0000;HP=1;HapScore=1;MGOF=1;MMLQ=28;MQ=60.0;NF=15;NR=40;PP=2533;QD=20;SC=ATATTGTTACCGATAGAGGCA;SbPval=0.5;Source=Platypus;TC=57;TCF=15;TCR=42;TR=55;WE=63527093;WS=63527073;set=Platypus	GT:AD:AF:DP	1/1:2,55:0.96:57
chr18	63527085	rs8091386	A	T	2981.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.089;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=40.85;ReadPosRankSum=1.882;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:3,70:0.96:73
chr18	64176365	rs1055335	G	T	6814.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr18	64748928	rs11423865	C	CT	3975.73	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:2,167:0.99:169
chr18	66503897	rs66538157	CAAA	C	539.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.996;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.45;MQRankSum=0.474;QD=24.53;ReadPosRankSum=0.177;SOR=1.697;set=HC	GT:AD:AF:DP	1/1:2,20:0.91:22
chr18	66504093	rs485613	A	C	9805.77	.	AC=2;AF=1.00;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	1/1:0,361:1.00:361
chr18	66504459	rs572020	A	T	4401.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr18	66509474	rs35993883	GTA	G	91.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.792;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.47;ReadPosRankSum=1.415;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chr18	66511027	rs9962597	C	T	628.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr18	66511207	rs33926572	TA	T	619.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr18	66513256	rs8088575	A	G	777.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr18	66513458	rs186385550	A	G	1606.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr18	66513471	rs1954878	C	G	1717.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr18	66513662	rs1977942	T	C	6948.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr18	66513749	rs1970675	T	C	4480.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr18	66513769	rs1539895	A	C	3372.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr18	66513840	rs1970674	C	A	1750.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.68;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr18	66513846	rs1970673	C	T	1637.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.49;SOR=3.383;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr18	66542108	rs2004027	T	A	528.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr18	66678131	rs7234663	A	G	1482.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr18	66678453	rs930164	A	G	725.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr18	67068605	rs33984456	TG	T	5268.73	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:6,196:0.97:202
chr18	67345034	rs8099030	T	C	3092.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr18	67345250	rs8084618	C	T	387.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr18	67365577	rs7241894	G	A	13488.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.88;SOR=1.186;set=HC	GT:AD:AF:DP	1/1:0,294:1.00:294
chr18	67365585	rs4581806	A	G	14633.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.46;SOR=1.115;set=HC	GT:AD:AF:DP	1/1:0,353:1.00:353
chr18	67531797	rs763362	A	G	2508.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.23;SOR=4.047;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr18	67563309	rs1630425	A	C	3938.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr18	67563348	rs1788115	T	C	2161.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr18	67613926	rs10782036	A	G	1546.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr18	67613944	rs57226213	T	TA	112.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.354;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=2.230;QD=1.66;ReadPosRankSum=-0.780;SOR=0.542;set=HC	GT:AD:AF:DP	0/1:50,18:0.26:68
chr18	67614674	rs3214811	T	TA	739.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.172;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=2.270;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.20;ReadPosRankSum=2.292;SOR=0.618;set=HC	GT:AD:AF:DP	1/1:3,40:0.93:43
chr18	67718688	rs4891392	A	G	9609.77	.	AC=2;AF=1.00;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	1/1:0,353:1.00:353
chr18	67724802	rs12968602	A	G	863.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr18	67726975	rs11876398	A	G	720.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr18	67727003	rs1435086	A	T	1313.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr18	67733234	rs11151561	T	A	1855.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr18	67741117	rs1369292	G	A	3867.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr18	67741309	rs1369293	G	A	2341.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr18	67742801	rs285228	G	A	2998.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr18	67759549	rs4891394	C	A	1855.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr18	67809632	rs78051412	CA	C	178.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.171;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.03;ReadPosRankSum=-1.290;SOR=0.600;set=HC	GT:AD:AF:DP	0/1:35,24:0.41:59
chr18	67809647	rs11665653	A	C	1922.73	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=31.52;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:1,60:0.98:61
chr18	67812773	rs11662011	G	A	1013.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr18	67817744	rs12606964	T	C	1372.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr18	67818046	rs12604751	C	T	652.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr18	67860719	rs283250	T	C	1215.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr18	67863850	rs74941514	T	TCTC	7883.73	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr18	67871343	rs3911730	A	C	7975.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:2,300:0.99:302
chr18	70209321	rs7237888	C	A	2891.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr18	70416367	rs35742923	C	CA	2732.73	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:2,112:0.98:114
chr18	70417396	rs922999	C	T	2416.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr18	70532185	rs71924600	TA	T	126.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.132;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=1.104;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.62;ReadPosRankSum=0.244;SOR=0.873;set=HC	GT:AD:AF:DP	0/1:57,21:0.27:78
chr18	71442075	rs11872509	T	C	859.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.99;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr18	71442075	.	TGG	CGT	584	.	AC=2;AF=1.00;AN=2;BRF=0.27;FR=1.0000;HP=2;HapScore=1;MGOF=1;MMLQ=23;MQ=60.0;NF=8;NR=5;PP=584;QD=49.035990374;SC=AAAAAGAAGTTGGAAGATGCA;SbPval=0.71;Source=Platypus;TC=14;TCF=8;TCR=6;TR=13;WE=71442085;WS=71442065;set=Platypus	GT:AD:AF:DP	1/1:1,13:0.93:14
chr18	71442077	rs11875403	G	T	859.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.25;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr18	71749154	rs3831448	G	GT	1885.73	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr18	71796889	rs199845878	GA	G	176.84	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:1,12:0.92:13
chr18	71807614	rs17088833	T	C	3364.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr18	71815063	rs3813115	G	A	8408.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:1,313:1.00:314
chr18	71815122	rs3813114	G	A	4370.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr18	71822321	rs3737513	A	G	2178.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr18	71825718	.	T	TAATCA	1087.73	.	AC=2;AF=1.00;AN=2;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.51;SOR=3.528;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr18	71825719	.	A	AATCAAGCAAGC	2900	.	AC=2;AF=1.00;AN=2;BRF=0.28;FR=1.0000;HP=3;HapScore=2;MGOF=0;MMLQ=28;MQ=60.0;NF=0;NR=12;PP=2900;QD=20;SC=TGATTAAAATAGGGTTTCTGA;SbPval=1.0;Source=Platypus;TC=20;TCF=0;TCR=20;TR=12;WE=71825728;WS=71825709;set=Platypus	GT:AD:AF:DP	1/1:8,12:0.60:20
chr18	71825720	.	G	A	331	.	AC=2;AF=1.00;AN=2;BRF=0.28;FR=1.0000;HP=2;HapScore=2;MGOF=0;MMLQ=28;MQ=60.0;NF=0;NR=12;PP=331;QD=30.4809343789;SC=GATTAAAATAGGGTTTCTGAT;SbPval=1.0;Source=Platypus;TC=13;TCF=0;TCR=13;TR=12;WE=71825728;WS=71825709;set=Platypus	GT:AD:AF:DP	1/1:1,12:0.92:13
chr18	71825720	.	G	GCAAGCA	1087.73	.	AC=2;AF=1.00;AN=2;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=49.44;SOR=4.804;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr18	71920966	rs1790871	T	C	5665.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr18	71924145	.	A	G	2898.77	.	AC=2;AF=1.00;AN=2;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr18	71927852	rs7238784	G	T	542.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr18	71930734	rs2032262	T	C	4368.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr18	71930758	rs2032263	G	A	3424.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.02;SOR=1.797;set=HC	GT:AD:AF:DP	1/1:0,118:1.00:118
chr18	71930834	rs144732931	C	CTG	1267.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr18	71930844	rs2032264	C	G	1096.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr18	71958971	rs150530087	C	A	12366.77	.	AC=2;AF=1.00;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	1/1:0,473:1.00:473
chr18	72021717	rs12606060	T	C	3811.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr18	72103782	rs2278154	T	C	1895.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr18	72109174	rs1559805	C	A	4931.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr18	72113730	rs3861310	A	G	3097.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr18	72114455	rs8087020	C	T	8851.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	1/1:0,336:1.00:336
chr18	72167124	rs3764509	C	G	2636.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr18	72168608	rs2303463	G	A	1683.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr18	72173270	rs35061137	GC	G	2167.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr18	72173275	.	G	T	2176.77	.	AC=2;AF=1.00;AN=2;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.22;QD=44.42;SOR=2.078;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr18	72173278	rs34780792	G	A	2086.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.23;QD=45.36;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr18	72173282	.	G	T	1951.77	.	AC=2;AF=1.00;AN=2;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.24;QD=44.36;SOR=2.409;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr18	72176083	rs2278161	T	C	3158.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr18	72178161	rs2278159	T	C	2945.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:2,117:0.98:119
chr18	72178300	rs2278158	G	T	661.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr18	72179579	rs734559	G	A	5011.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr18	72180739	rs2241510	G	A	2977.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr18	72183695	rs2241509	T	A	2116.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:1,66:0.99:67
chr18	72186059	rs733062	G	A	3255.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr18	72186175	rs5826329	T	TC	8586.73	.	AC=2;AF=1.00;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	1/1:2,330:0.99:332
chr18	72186404	rs2241508	G	A	660.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr18	72223591	rs10663835	G	GTGC	7137.73	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:13,174:0.93:187
chr18	72226455	rs12605490	A	T	1748.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr18	72226539	rs12607796	T	C	4570.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.73;SOR=1.120;set=HC	GT:AD:AF:DP	1/1:0,171:1.00:171
chr18	72226809	rs7239132	C	A	795.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr18	72228124	rs4263028	A	G	7389.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:1,288:1.00:289
chr18	72228269	rs4329999	G	A	3103.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr18	72238283	rs4892244	A	G	1396.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:2,56:0.97:58
chr18	72238472	rs73973908	C	A	8256.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:2,305:0.99:307
chr18	72247278	rs4892247	C	T	1690.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr18	72250762	rs11659237	T	C	7291.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr18	72264397	rs7505285	A	C	3239.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.00;SOR=2.115;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr18	72264406	rs7505289	A	G	3531.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.04;SOR=1.939;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr18	72264473	rs7505334	C	T	5223.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr18	72343008	rs7243081	T	C	9010.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:0,335:1.00:335
chr18	72493314	rs7228438	G	T	461.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr18	72593118	rs2628126	C	T	2416.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr18	72776121	rs3744913	G	A	9380.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chr18	72997677	rs3826609	C	T	8154.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chr18	72998004	rs3744908	T	C	10175.77	.	AC=2;AF=1.00;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	1/1:0,380:1.00:380
chr18	72998268	rs3744909	T	C	7818.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr18	72998886	rs3809997	T	C	7866.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr18	72999359	rs55679337	T	C	8998.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:5,321:0.98:326
chr18	73130653	rs3214645	G	GTT	1541.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr18	73139335	rs7235563	C	G	4417.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr18	74090957	rs56087742	CG	C	6155.73	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr18	74207594	rs3813101	T	C	1274.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:1,46:0.98:47
chr18	74208485	rs3841258	CG	C	3022.73	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr18	74208573	rs4891164	G	A	533.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr18	74591992	rs5826483	G	GT,GTT	856.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.796;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=1.483;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.16;MQRankSum=0.539;QD=13.60;ReadPosRankSum=-0.217;SOR=1.301;set=HC	GT:AD:AF:DP	1/2:11,29,23:0.46,0.37:63
chr18	74611127	rs608433	A	G	9167.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	1/1:0,338:1.00:338
chr18	74637100	rs55890756	G	A	643.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr18	74648536	rs630229	G	T	2114.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr18	74672741	rs72987221	C	T	5065.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr18	74680259	rs657066	C	T	6364.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr18	74680369	rs470774	C	T	2428.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:2,87:0.98:89
chr18	74692336	rs9199	A	G	2564.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr18	74702864	rs9676113	G	A	4591.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:1,176:0.99:177
chr18	74702999	rs9676140	C	G	1875.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:1,66:0.99:67
chr18	74721697	rs3752070	G	A	2606.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr18	74728739	rs145031965	CT	C	6834.73	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr18	74778515	rs7241461	G	T	9132.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:0,342:1.00:342
chr18	74781046	.	C	G	10903.77	.	AC=2;AF=1.00;AN=2;DP=404;set=Intersection	GT:AD:AF:DP	1/1:0,396:1.00:396
chr18	74781086	rs58502912	A	C	6888.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr18	74962447	rs13306375	A	G	1590.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr18	74962645	rs5374	T	C	10374.77	.	AC=2;AF=1.00;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	1/1:2,386:0.99:388
chr18	74980498	.	GCCT	G	80.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.262;ClippingRankSum=0.000;DP=124;ExcessHet=3.0103;FS=1.278;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.69;ReadPosRankSum=-0.105;SOR=0.386;set=HC	GT:AD:AF:DP	0/1:106,11:0.09:117
chr18	74980809	rs5376	G	A	9213.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	1/1:0,346:1.00:346
chr18	76753491	rs7233194	C	T	20755.77	.	AC=2;AF=1.00;AN=2;DB;DP=781;set=Intersection	GT:AD:AF:DP	1/1:2,771:1.00:773
chr18	76753588	rs7240860	A	G	12785.77	.	AC=2;AF=1.00;AN=2;DB;DP=465;set=Intersection	GT:AD:AF:DP	1/1:2,455:1.00:457
chr18	76753768	rs2447437	C	G	10737.77	.	AC=2;AF=1.00;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	1/1:1,413:1.00:414
chr18	76754466	rs2472644	C	T	6591.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr18	77067000	rs3760541	T	G	7403.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:3,292:0.99:295
chr18	77107934	rs9965202	C	T	3685.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr18	77108248	rs148971054	GAAAAA	G,GA	4397.73	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.77;QD=45.81;SOR=1.965;set=HC	GT:AD:AF:DP	1/2:0,72,24:0.75,0.25:96
chr18	77108253	rs77791799	A	G	103.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.791;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=5.351;MLEAC=1;MLEAF=0.500;MQ=60.79;MQRankSum=-1.844;QD=1.07;ReadPosRankSum=1.324;SOR=0.252;set=HC	GT:AD:AF:DP	0/1:74,23:0.24:97
chr18	77108254	rs201867566	A	G	575.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.587;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=7.147;MLEAC=1;MLEAF=0.500;MQ=60.79;MQRankSum=3.427;QD=5.82;ReadPosRankSum=-1.233;SOR=1.419;set=HC	GT:AD:AF:DP	0/1:51,48:0.48:99
chr18	77108255	rs77529186	A	G	52.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-4.061;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=1.046;MLEAC=1;MLEAF=0.500;MQ=60.79;MQRankSum=-1.661;QD=0.53;ReadPosRankSum=1.133;SOR=0.883;set=HC	GT:AD:AF:DP	0/1:79,20:0.20:99
chr18	77137202	rs1110784	A	G	6098.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr18	77156448	rs111602851	C	G	1031.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr18	77170006	rs182507	C	T	876.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr18	77208922	rs25657	C	T	11030.77	.	AC=2;AF=1.00;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	1/1:4,428:0.99:432
chr18	77210902	rs680802	C	T	3725.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr18	77246406	rs754093	T	G	8527.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr18	77246978	rs754096	G	A	7852.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr18	77287385	rs451691	T	C	838.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr18	77402295	.	A	AC	117.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.044;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;FS=4.914;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.80;ReadPosRankSum=1.995;SOR=0.050;set=HC	GT:AD:AF:DP	0/1:21,10:0.32:31
chr18	77420703	rs868678	C	G	3305.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr18	77439637	rs75667721	G	T	797.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr18	77473127	rs2279103	C	T	3275.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:1,124:0.99:125
chr18	77477515	rs8084175	C	T	1844.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr18	77478166	rs55830009	G	A	3065.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr18	77489169	rs9956086	G	A	660.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr18	77513465	rs8086389	G	A	2207.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr18	77513721	rs626169	T	C	10180.77	.	AC=2;AF=1.00;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	1/1:0,388:1.00:388
chr18	77513841	rs76088733	G	A	1775.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr18	77623611	rs62103176	G	C	492.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr18	77623691	rs71338073	G	GGGC	1402.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr18	77663940	rs3744881	G	A	560.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr18	77694128	rs3837882	TA	T	1572.73	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:28,107:0.79:135
chr18	77726544	.	G	GA	30.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.530;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.02;ReadPosRankSum=1.079;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:23,7:0.23:30
chr18	77728045	rs2298644	C	T	3015.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr18	77728135	rs2298645	G	T	4709.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr18	77728221	rs35659527	T	C	2319.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr18	77736735	rs4799116	T	C	12775.77	.	AC=2;AF=1.00;AN=2;DB;DP=485;set=Intersection	GT:AD:AF:DP	1/1:0,478:1.00:478
chr18	77737810	rs147014161	TTTTTG	T	529.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr18	77796574	rs12957601	C	T	2388.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr18	77797321	rs748337	C	T	1770.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr18	77798461	rs3744870	C	A	1402.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr18	77802297	rs66538525	C	T	1051.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:2,38:0.95:40
chr18	77805856	rs3744872	A	C	5524.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr18	77891039	rs1064058	T	A	2520.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr18	77893683	rs1064059	A	G	12072.77	.	AC=2;AF=1.00;AN=2;DB;DP=453;set=Intersection	GT:AD:AF:DP	1/1:1,448:1.00:449
chr18	77895192	rs3744878	G	A	8785.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr18	77896699	.	C	CAA	208.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.180;ClippingRankSum=-0.000;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.91;ReadPosRankSum=0.319;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:2,12:0.86:14
chr18	77921331	rs33942860	CAG	C	12597.73	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr18	77927028	rs1879105	A	G	3377.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr19	281360	rs7815	C	T	140.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:7,7:0.50:14
chr19	282753	rs1138439	G	A	2026.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:103,99:0.49:202
chr19	282875	rs62103050	G	A	659.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:28,31:0.53:59
chr19	287970	.	G	GT	917.73	.	AC=2;AF=1.00;AN=2;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr19	288246	rs10409452	T	C	166.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:18,10:0.36:28
chr19	312143	rs10416918	T	C	4651.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr19	327260	.	T	TA	82.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.270;ClippingRankSum=0.000;DP=56;ExcessHet=3.0103;FS=1.478;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=0.000;QD=1.84;ReadPosRankSum=2.340;SOR=0.430;set=HC	GT:AD:AF:DP	0/1:31,14:0.31:45
chr19	335946	rs3816322	G	A	410.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:11,17:0.61:28
chr19	367313	rs585487	G	A	1664.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:1,63:0.98:64
chr19	371369	rs644609	G	T	585.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.223;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=7.495;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.44;ReadPosRankSum=-0.195;SOR=1.724;set=HC	GT:AD:AF:DP	0/1:56,35:0.38:91
chr19	371396	rs644644	G	C	2802.73	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.39;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr19	372551	rs652081	A	G	3839.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr19	373673	rs2303814	G	A	1272.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr19	373690	rs74176336	C	T	1012.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr19	373897	rs668447	G	C	1941.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:113,94:0.45:207
chr19	374492	rs10410345	G	C	1623.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:2,57:0.97:59
chr19	374547	rs648770	T	C	300.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:10,12:0.55:22
chr19	407900	rs10411998	A	G	1676.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:97,84:0.46:181
chr19	418769	rs12981152	G	A	194.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:9,11:0.55:20
chr19	418786	rs1115033	G	A	305.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:12,15:0.56:27
chr19	422534	rs12984753	G	A	785.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.752;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=6.495;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.55;ReadPosRankSum=0.861;SOR=2.019;set=HC	GT:AD:AF:DP	0/1:31,23:0.43:54
chr19	422543	rs2287958	G	A	652.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.186;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=2.123;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.32;ReadPosRankSum=0.901;SOR=1.445;set=HC	GT:AD:AF:DP	0/1:22,18:0.45:40
chr19	422555	rs2287957	G	A	420.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:13,17:0.57:30
chr19	438868	rs113879435	G	A	2880.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:154,140:0.48:294
chr19	439055	rs112380345	G	A	1510.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.504;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.10;ReadPosRankSum=0.415;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:95,71:0.43:166
chr19	460668	rs189741717	C	G	191.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=15.98;SOR=5.136;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr19	463768	rs148507624	T	G	87.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:8,5:0.38:13
chr19	463810	rs60512152	GC	G	884.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr19	464080	rs76592524	C	T	622.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:25,29:0.54:54
chr19	464310	rs34551779	A	G	862.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:41,41:0.50:82
chr19	467740	rs73503315	C	T	464.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:11,21:0.66:32
chr19	496430	rs188848816	G	A	511.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:27,25:0.48:52
chr19	496652	rs114840310	A	G	726.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.79;QD=27.95;SOR=1.697;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr19	498212	rs12461640	A	C	5119.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr19	498524	rs2302217	A	G	7684.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:2,293:0.99:295
chr19	499425	rs34283757	GACAC	G	10357.73	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr19	501695	.	C	T	276	.	AC=1;AF=0.500;AN=2;BRF=0.57;FR=0.5000;HP=1;HapScore=2;MGOF=38;MMLQ=24;MQ=55.24;NF=16;NR=5;PP=276;QD=14.7986291689;SC=CTCCCCGGAGCCTCCCGACAC;SbPval=0.76;Source=Platypus;TC=71;TCF=50;TCR=21;TR=21;WE=501703;WS=501685;set=Platypus	GT:AD:AF:DP	0/1:50,21:0.30:71
chr19	501743	.	T	TCTCCCGACACCACCTCCCAGGAGCCTCCCGACACCACCTCCCAGGAGC	5522.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.521;ClippingRankSum=0.000;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.79;MQRankSum=-0.622;QD=87.66;ReadPosRankSum=-1.040;SOR=1.498;set=HC	GT:AD:AF:DP	1/1:2,61:0.97:63
chr19	501900	rs3745925	C	A	4034.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:1,148:0.99:149
chr19	507444	.	T	TGGG	804.73	.	AC=1;AF=0.500;AN=2;DP=32;set=Intersection	GT:AD:AF:DP	0/1:12,20:0.62:32
chr19	544140	rs892209	G	A	652.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.550;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.06;ReadPosRankSum=0.089;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:17,33:0.66:50
chr19	544277	rs12981692	C	G	822.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr19	544315	rs3760874	A	G	707.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr19	547224	rs4919846	A	G	3069.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr19	547491	rs2070795	C	T	821.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr19	548865	rs12972174	C	T	241.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.18;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr19	549595	rs1599883	T	C	2605.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr19	549678	rs1599882	A	G	6576.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr19	572811	rs28915407	G	T	149.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:5,7:0.58:12
chr19	577760	rs2283569	T	C	347.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:23,18:0.44:41
chr19	578208	rs2283570	C	T	1078.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:47,51:0.52:98
chr19	579010	rs7253615	G	A	538.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:26,27:0.51:53
chr19	579100	rs2283573	C	T	1336.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:77,67:0.47:144
chr19	579157	rs28921990	T	C	1240.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:88,68:0.44:156
chr19	579252	rs150528585	AGGGTGCCTTCCCGAAGG	A	953.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.813;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.633;QD=8.83;ReadPosRankSum=0.075;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:78,30:0.28:108
chr19	579450	rs2283574	G	A	2017.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:104,98:0.49:202
chr19	579627	rs1803202	C	T	2090.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:101,96:0.49:197
chr19	579699	rs12608994	C	T	554.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:35,25:0.42:60
chr19	579713	rs12609013	C	T	396.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:32,17:0.35:49
chr19	580163	rs5826703	GA	G	845.73	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:16,23:0.59:39
chr19	580388	rs2229664	C	G	2670.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:86,127:0.60:213
chr19	580575	rs28992474	C	T	1146.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:59,51:0.46:110
chr19	580810	.	T	C	651	.	AC=1;AF=0.500;AN=2;BRF=0.46;FR=0.5000;HP=2;HapScore=2;MGOF=20;MMLQ=24;MQ=59.63;NF=18;NR=36;PP=651;QD=12.699466899;SC=CTGGGGGTCCTGGACCCAGCC;SbPval=0.63;Source=Platypus;TC=113;TCF=40;TCR=73;TR=54;WE=580818;WS=580800;set=Platypus	GT:AD:AF:DP	1/0:59,54:0.48:113
chr19	580856	.	C	G	515	.	AC=1;AF=0.500;AN=2;BRF=0.24;FR=0.5000;HP=2;HapScore=3;MGOF=33;MMLQ=24;MQ=58.67;NF=4;NR=13;PP=515;QD=32.339483091;SC=CTGGGGGTCCCGGACCCAGCC;SbPval=0.51;Source=Platypus;TC=51;TCF=11;TCR=40;TR=17;WE=580878;WS=580846;set=Platypus	GT:AD:AF:DP	0/1:34,17:0.33:51
chr19	580870	.	A	C	515	.	AC=1;AF=0.500;AN=2;BRF=0.24;FR=0.5000;HP=2;HapScore=3;MGOF=33;MMLQ=23;MQ=58.2;NF=4;NR=11;PP=515;QD=36.6514141698;SC=CCCAGCCCTCAGGACTGGGTG;SbPval=0.5;Source=Platypus;TC=42;TCF=10;TCR=32;TR=15;WE=580878;WS=580846;set=Platypus	GT:AD:AF:DP	0/1:27,15:0.36:42
chr19	581198	.	T	C	77	.	AC=1;AF=0.500;AN=2;BRF=0.39;FR=0.5000;HP=2;HapScore=2;MGOF=8;MMLQ=24;MQ=52.54;NF=4;NR=2;PP=77;QD=18.6285354245;SC=GGTCCCGGACTCAGCCCTCCG;SbPval=0.15;Source=Platypus;TC=26;TCF=23;TCR=3;TR=6;WE=581206;WS=581188;set=Platypus	GT:AD:AF:DP	1/0:20,6:0.23:26
chr19	581207	.	CGGACTGGGTGAGGGGCCTAGACTGGGGGTCCCGGACTCAGCCCTCA	C	851.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.069;ClippingRankSum=0.000;DP=113;ExcessHet=3.0103;FS=8.239;MLEAC=1;MLEAF=0.500;MQ=59.72;MQRankSum=0.000;QD=8.19;ReadPosRankSum=-0.340;SOR=0.249;set=HC	GT:AD:AF:DP	0/1:61,43:0.41:104
chr19	581253	.	A	C	500	.	AC=1;AF=0.500;AN=2;BRF=0.51;FR=0.5000;HP=2;HapScore=2;MGOF=3;MMLQ=24;MQ=59.55;NF=20;NR=15;PP=500;QD=15.2791775013;SC=CTCAGCCCTCAGGACTGGGTG;SbPval=0.22;Source=Platypus;TC=81;TCF=54;TCR=27;TR=35;WE=581261;WS=581243;set=Platypus	GT:AD:AF:DP	0/1:46,35:0.43:81
chr19	582253	rs4919862	T	C	4214.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:2,162:0.99:164
chr19	582468	rs2074962	A	G	1463.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:64,67:0.51:131
chr19	582775	rs8637	A	G	767.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:48,40:0.45:88
chr19	582927	rs8259	T	A	1853.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:96,92:0.49:188
chr19	603441	rs142154006	G	A	242.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:9,10:0.53:19
chr19	605171	rs12981860	T	C	1390.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr19	641215	rs7246140	T	C	3414.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr19	643104	.	G	T	299	.	AC=1;AF=0.500;AN=2;BRF=0.33;FR=0.5001;HP=2;HapScore=2;MGOF=34;MMLQ=27;MQ=59.62;NF=16;NR=2;PP=299;QD=18.5428451415;SC=GTCGTGGTCGGGAGGGGACTC;SbPval=0.79;Source=Platypus;TC=25;TCF=21;TCR=4;TR=18;WE=643112;WS=643094;set=Platypus	GT:AD:AF:DP	0/1:7,18:0.72:25
chr19	643104	.	G	GGAGGGGACTCGTGGTCTGGGGCAGGGGGGGCTCCTCGTGTCTGTCGTGGTCAT	970.73	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=485.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr19	646900	rs7249518	A	G	3237.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr19	647039	rs2074460	T	C	1504.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr19	649110	rs2040736	G	C	160.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr19	652206	rs8102953	G	A	1444.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr19	652238	rs11554788	A	G	609.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:40,30:0.43:70
chr19	652739	rs12973146	C	G	3735.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr19	652948	rs10153505	T	G	5245.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr19	676559	rs62134281	G	A	249.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.81;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr19	680378	rs7246311	C	T	796.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr19	685985	rs62131270	G	C	1579.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr19	687142	rs8102982	G	A	5762.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr19	691909	rs4375794	T	C	3752.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr19	725939	rs3787017	C	T	277.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:21,13:0.38:34
chr19	727105	rs113692988	G	A	1640.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:71,74:0.51:145
chr19	727225	.	C	CAACCCT	1408.73	.	AC=2;AF=1.00;AN=2;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr19	727237	.	C	CGACCCT	1408.73	.	AC=2;AF=1.00;AN=2;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr19	727261	.	CAACCT	C	1931	.	AC=1;AF=0.500;AN=2;BRF=0.55;FR=0.5000;HP=3;HapScore=1;MGOF=97;MMLQ=24;MQ=55.06;NF=2;NR=26;PP=1931;QD=69.7857142857;SC=ACCCTGACCCCAACCTGACCC;SbPval=0.98;Source=Platypus;TC=45;TCF=10;TCR=35;TR=28;WE=727273;WS=727251;set=Platypus	GT:AD:AF:DP	0/1:17,28:0.62:45
chr19	727401	rs77432625	C	G	1562.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:112,80:0.42:192
chr19	727754	rs67650419	C	T	474.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:14,22:0.61:36
chr19	731055	rs10405821	G	C	1178.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:27,32:0.54:59
chr19	731077	rs10405836	G	C	1213.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.706;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=2.156;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.85;ReadPosRankSum=-0.514;SOR=1.129;set=HC	GT:AD:AF:DP	0/1:34,34:0.50:68
chr19	731077	.	GG	CT	359	.	AC=1;AF=0.500;AN=2;BRF=0.53;FR=0.5000;HP=1;HapScore=2;MGOF=22;MMLQ=28;MQ=60.0;NF=16;NR=5;PP=359;QD=19.6413273744;SC=CACCCTCACAGGCACACCCTC;SbPval=0.73;Source=Platypus;TC=46;TCF=33;TCR=13;TR=21;WE=731086;WS=731067;set=Platypus	GT:AD:AF:DP	1/0:25,21:0.46:46
chr19	731078	rs2074355	G	T	2376.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.546;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=33.95;ReadPosRankSum=0.733;SOR=0.613;set=HC	GT:AD:AF:DP	1/1:1,69:0.99:70
chr19	731135	rs144513487	G	A	801.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:78,45:0.37:123
chr19	731144	rs1050457	A	G	1679.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:57,82:0.59:139
chr19	740560	rs10419493	T	C	1809.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr19	803686	rs116961534	G	A	1205.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:72,55:0.43:127
chr19	805238	rs377123149	C	T	831.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:52,35:0.40:87
chr19	805441	rs117971528	G	C	1320.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:74,66:0.47:140
chr19	808474	rs149887681	G	A	837.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:33,48:0.59:81
chr19	812801	rs3746137	C	G	157.82	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:2,8:0.80:10
chr19	815086	rs351988	A	G	2518.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:143,125:0.47:268
chr19	815258	rs202012376	C	T	2651.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.798;ClippingRankSum=0.000;DB;DP=271;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.89;ReadPosRankSum=-0.344;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:139,129:0.48:268
chr19	827975	rs649411	T	C	800.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:37,39:0.51:76
chr19	829568	rs12460890	C	T	3279.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:132,149:0.53:281
chr19	829723	rs678976	A	G	5616.77	.	AC=1;AF=0.500;AN=2;DB;DP=504;set=Intersection	GT:AD:AF:DP	0/1:229,267:0.54:496
chr19	829824	rs6510980	C	T	992.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:46,40:0.47:86
chr19	830621	rs653847	A	C	1921.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:79,85:0.52:164
chr19	830854	rs595844	T	C	5793.77	.	AC=1;AF=0.500;AN=2;DB;DP=651;set=Intersection	GT:AD:AF:DP	0/1:356,287:0.45:643
chr19	841100	rs62132296	C	T	973.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:41,48:0.54:89
chr19	843692	rs2301879	A	G	1428.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.929;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=0.786;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.76;ReadPosRankSum=0.520;SOR=0.857;set=HC	GT:AD:AF:DP	0/1:48,64:0.57:112
chr19	862024	rs1683561	C	G	1618.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr19	868115	rs13090	C	T	352.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:23,18:0.44:41
chr19	868551	rs1631848	T	C	437.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:47,24:0.34:71
chr19	868620	rs1651891	G	A	92.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:19,6:0.24:25
chr19	869037	rs1683591	A	G	313.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:7,14:0.67:21
chr19	871135	rs1683569	A	G	881.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:43,40:0.48:83
chr19	871222	rs8100258	G	A	1339.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:43,64:0.60:107
chr19	871447	rs1683570	A	G	1894.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr19	871724	rs73492568	G	A	155.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:20,9:0.31:29
chr19	871890	.	GC	G	308	.	AC=1;AF=0.500;AN=2;BRF=0.56;FR=0.5000;HP=1;HapScore=4;MGOF=93;MMLQ=28;MQ=50.64;NF=2;NR=0;PP=308;QD=165.0;SC=AGAGCGGGGAGCGGGGAGAGG;SbPval=1.0;Source=Platypus;TC=5;TCF=5;TCR=0;TR=2;WE=871906;WS=871880;set=Platypus	GT:AD:AF:DP	0/1:3,2:0.40:5
chr19	871898	.	A	C	546	.	AC=1;AF=0.500;AN=2;BRF=0.56;FR=0.5000;HP=5;HapScore=4;MGOF=93;MMLQ=24;MQ=56.03;NF=20;NR=0;PP=546;QD=29.0385606274;SC=GAGCGGGGAGAGGGGAGGGGC;SbPval=1.0;Source=Platypus;TC=42;TCF=42;TCR=0;TR=20;WE=871906;WS=871880;set=Platypus	GT:AD:AF:DP	0/1:22,20:0.48:42
chr19	871987	rs78047294	G	A	2066.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:129,103:0.44:232
chr19	872089	rs72984031	A	G	3075.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:132,144:0.52:276
chr19	873743	rs1651888	G	A	93.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:12,5:0.29:17
chr19	875389	rs11546307	G	A	682.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:46,33:0.42:79
chr19	876910	rs112523035	C	T	363.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:7,16:0.70:23
chr19	884782	rs2965294	C	G	1244.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:81,58:0.42:139
chr19	885818	rs1060442	A	G	5827.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:2,211:0.99:213
chr19	890165	rs6678	G	A	815.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:32,39:0.55:71
chr19	897571	rs3746149	G	C	371.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:28,20:0.42:48
chr19	899567	rs2930885	C	G	2626.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:105,123:0.54:228
chr19	899978	rs2306718	G	A	737.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:44,37:0.46:81
chr19	900789	rs2930886	A	G	73.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.157;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.22;ReadPosRankSum=-1.465;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:3,5:0.62:8
chr19	900956	rs200378573	G	A	666.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:23,33:0.59:56
chr19	901955	rs4343405	C	T	2547.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:137,125:0.48:262
chr19	920170	rs350131	G	T	821.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr19	920642	rs350132	T	A	3301.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr19	929678	rs3826948	G	A	1531.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr19	929753	rs1799595	A	G	1337.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr19	960187	rs1637993	G	C	6066.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr19	960266	rs1683584	C	T	900.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:21,35:0.62:56
chr19	960277	rs2302111	G	C	465.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:30,19:0.39:49
chr19	964434	rs2240615	G	A	838.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:44,41:0.48:85
chr19	965043	rs12608658	T	C	4709.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr19	966693	rs6510986	C	T	4516.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr19	966891	rs113560697	C	T	655.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:21,28:0.57:49
chr19	968318	rs8105235	C	T	418.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:16,19:0.54:35
chr19	968345	rs7251219	CA	TG	1803.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr19	971933	rs1051504	A	G	1436.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.467;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=5.955;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.40;ReadPosRankSum=0.274;SOR=0.436;set=HC	GT:AD:AF:DP	0/1:56,70:0.56:126
chr19	971949	rs1051505	G	A	4715.73	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:1,132:0.99:133
chr19	984218	rs8112598	C	T	413.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr19	984231	rs34402804	G	A	271.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:6,12:0.67:18
chr19	984533	rs2301810	T	C	1245.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:31,55:0.64:86
chr19	984537	rs61732720	A	G	387.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:50,24:0.32:74
chr19	984554	rs4806884	C	G	810.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:17,35:0.67:52
chr19	984578	rs2301811	T	G	540.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:13,23:0.64:36
chr19	985815	rs2074573	T	G	2199.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:94,98:0.51:192
chr19	985997	rs2074574	C	G	7109.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr19	989730	rs2240147	C	A	2252.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:138,112:0.45:250
chr19	990185	rs10409367	G	C	3133.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr19	990238	rs117300378	C	T	2897.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:125,142:0.53:267
chr19	990281	rs2158367	G	A	9837.77	.	AC=2;AF=1.00;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	1/1:0,380:1.00:380
chr19	990394	rs2240148	T	C	1987.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:100,101:0.50:201
chr19	990736	rs2365709	C	T	295.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:31,14:0.31:45
chr19	990819	rs2240149	G	A	1986.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:88,94:0.52:182
chr19	991063	rs2240150	A	C	2054.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:120,96:0.44:216
chr19	991129	rs11538683	G	A	1226.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:98,58:0.37:156
chr19	991196	rs60416441	CGTCCCAG	CCCCAG,C	9088.73	.	AC=2,0;AF=1.00,0.00;ALERT;AN=2;DB;DP=208;set=Intersection	GT:AF:DP	1/1:1.00:203
chr19	991199	rs201372013	CCCAGG	C	9088.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=205;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.77;SOR=0.828;set=HC	GT:AD:AF:DP	1/1:0,203:1.00:203
chr19	991204	.	G	C	2686	.	AC=2;AF=1.00;AN=2;BRF=0.49;FR=1.0000;HP=1;HapScore=1;MGOF=8;MMLQ=28;MQ=60.0;NF=58;NR=58;PP=2686;QD=20;SC=CACGTCCCAGGTGACCCCTGT;SbPval=0.41;Source=Platypus;TC=126;TCF=66;TCR=60;TR=116;WE=991212;WS=991186;set=Platypus	GT:AD:AF:DP	1/1:10,116:0.92:126
chr19	991374	rs77430782	C	T	583.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:40,30:0.43:70
chr19	991892	rs71335285	T	C	438.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:25,18:0.42:43
chr19	991968	rs1127043	T	C	1128.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:77,59:0.43:136
chr19	1000420	rs112743753	A	G	788.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:56,43:0.43:99
chr19	1000568	rs112236900	C	A	175.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.539;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.55;ReadPosRankSum=1.144;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:5,9:0.64:14
chr19	1000785	rs12986002	C	T	54.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.657;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.91;ReadPosRankSum=-0.621;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:10,4:0.29:14
chr19	1000799	rs2301813	G	C	53.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.638;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.84;ReadPosRankSum=-1.423;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:10,4:0.29:14
chr19	1003094	rs117174915	G	A	176.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr19	1003808	rs2240155	A	G	753.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:37,38:0.51:75
chr19	1003857	rs4806904	G	A	680.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.454;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.46;ReadPosRankSum=1.035;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:20,19:0.49:39
chr19	1003860	rs2240156	C	T	683.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.164;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.53;ReadPosRankSum=1.093;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:20,19:0.49:39
chr19	1004710	rs4807399	C	T	15769.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	1/1:0,352:1.00:352
chr19	1004724	rs11880849	A	G	17609.77	.	AC=2;AF=1.00;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	1/1:0,390:1.00:390
chr19	1004740	rs2240157	T	C	17481.77	.	AC=2;AF=1.00;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	1/1:0,407:1.00:407
chr19	1004808	rs61736783	C	T	4481.77	.	AC=1;AF=0.500;AN=2;DB;DP=476;set=Intersection	GT:AD:AF:DP	0/1:245,227:0.48:472
chr19	1004823	rs4806908	G	A	7823.77	.	AC=1;AF=0.500;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	0/1:213,217:0.50:430
chr19	1004844	rs4806909	T	C	7509.77	.	AC=1;AF=0.500;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	0/1:210,207:0.50:417
chr19	1004896	rs10666583	G	GCGTT	7087.73	.	AC=1;AF=0.500;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	0/1:195,181:0.48:376
chr19	1005230	rs2240158	C	T	3466.77	.	AC=1;AF=0.500;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	0/1:189,163:0.46:352
chr19	1005531	rs12973948	G	C	2394.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:88,101:0.53:189
chr19	1005598	rs11671828	T	C	596.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:40,32:0.44:72
chr19	1008358	rs10403909	A	G	191.78	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr19	1008645	rs78914045	C	A	944.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:69,49:0.42:118
chr19	1009185	rs142853420	GAGC	G	433.73	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:20,13:0.39:33
chr19	1009365	rs10417824	T	A	92.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:19,7:0.27:26
chr19	1009485	rs10401245	C	G	461.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:15,23:0.61:38
chr19	1009550	rs142516571	GGCCCCCGCGGAGGCCCCACCACACTCT	G	1121.73	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:25,31:0.55:56
chr19	1010691	rs2240159	A	G	631.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:26,29:0.53:55
chr19	1010908	rs7248769	A	G	134.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.329;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=23.395;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.86;ReadPosRankSum=0.437;SOR=3.896;set=HC	GT:AD:AF:DP	0/1:17,6:0.26:23
chr19	1010908	.	AGT	GGC	144	.	AC=1;AF=0.500;AN=2;BRF=0.47;FR=0.5000;HP=2;HapScore=2;MGOF=9;MMLQ=24;MQ=60.0;NF=7;NR=0;PP=144;QD=28.2096964089;SC=CGGGAGGGAGAGTGGGAGTCA;SbPval=0.01;Source=Platypus;TC=25;TCF=11;TCR=14;TR=7;WE=1010918;WS=1010898;set=Platypus	GT:AD:AF:DP	0/1:18,7:0.28:25
chr19	1010910	rs7252527	T	C	134.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.034;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=22.825;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.39;ReadPosRankSum=1.223;SOR=3.897;set=HC	GT:AD:AF:DP	0/1:19,6:0.24:25
chr19	1010973	rs8100391	G	A	209.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:10,10:0.50:20
chr19	1011823	rs2240161	A	G	10307.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr19	1011846	rs10420656	T	C	4407.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.464;ClippingRankSum=0.000;DB;DP=379;ExcessHet=3.0103;FS=0.383;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.79;ReadPosRankSum=-0.452;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:173,201:0.54:374
chr19	1011856	rs113138803	C	A	14241.77	.	AC=2;AF=1.00;AN=2;DB;DP=402;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.06;SOR=1.147;set=HC	GT:AD:AF:DP	1/1:0,395:1.00:395
chr19	1012379	rs2240162	C	G	930.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.369;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=6.017;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.24;ReadPosRankSum=0.541;SOR=0.228;set=HC	GT:AD:AF:DP	0/1:29,25:0.46:54
chr19	1012379	.	CGT	GGC	681	.	AC=1;AF=0.500;AN=2;BRF=0.34;FR=0.5000;HP=5;HapScore=2;MGOF=9;MMLQ=24;MQ=60.0;NF=12;NR=8;PP=681;QD=36.7233937431;SC=CACAGCCCCCCGTCCCGCACC;SbPval=0.27;Source=Platypus;TC=49;TCF=34;TCR=15;TR=20;WE=1012389;WS=1012369;set=Platypus	GT:AD:AF:DP	0/1:29,20:0.41:49
chr19	1012381	rs2240163	T	C	930.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.110;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=6.114;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.92;ReadPosRankSum=0.822;SOR=0.211;set=HC	GT:AD:AF:DP	0/1:30,25:0.45:55
chr19	1012416	rs112926823	G	A	547.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:60,32:0.35:92
chr19	1012611	rs970100	A	C	1434.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:90,74:0.45:164
chr19	1014398	rs7146	A	G	3512.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr19	1014537	rs67806247	ACGTGATGGGG	A	494.73	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:19,14:0.42:33
chr19	1020673	rs1005504	C	G	1127.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr19	1031212	rs7247087	A	G	4093.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr19	1032369	rs10401325	C	T	2114.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr19	1032702	rs4315451	C	T	840.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr19	1032756	rs55784632	C	T	711.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr19	1032871	rs4630683	A	G	214.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr19	1036018	rs930232	G	A	1896.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr19	1036444	rs930231	G	A	2799.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:79,118:0.60:197
chr19	1036552	rs2304262	T	C	20432.77	.	AC=2;AF=1.00;AN=2;DB;DP=762;set=Intersection	GT:AD:AF:DP	1/1:0,757:1.00:757
chr19	1037640	.	C	T	877	.	AC=1;AF=0.500;AN=2;BRF=0.67;FR=0.5000;HP=2;HapScore=4;MGOF=374;MMLQ=24;MQ=43.6;NF=4;NR=0;PP=877;QD=227.942803137;SC=ATGACGGCTCCCGGGACCCGG;SbPval=1.0;Source=Platypus;TC=13;TCF=11;TCR=2;TR=4;WE=1037653;WS=1037630;set=Platypus	GT:AD:AF:DP	0/1:9,4:0.31:13
chr19	1037645	.	AC	A	1048	.	AC=1;AF=0.500;AN=2;BRF=0.67;FR=0.5000;HP=3;HapScore=4;MGOF=374;MMLQ=24;MQ=43.43;NF=3;NR=1;PP=1048;QD=268.75;SC=GGCTCCCGGGACCCGGCGGCA;SbPval=0.68;Source=Platypus;TC=12;TCF=9;TCR=3;TR=4;WE=1037653;WS=1037630;set=Platypus	GT:AD:AF:DP	0/1:8,4:0.33:12
chr19	1037670	rs199840457	A	G	124.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.767;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=8.966;MLEAC=1;MLEAF=0.500;MQ=51.69;MQRankSum=-1.974;QD=5.42;ReadPosRankSum=-0.560;SOR=1.878;set=HC	GT:AD:AF:DP	0/1:18,5:0.22:23
chr19	1037679	rs200505828	C	T	133.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.708;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=8.751;MLEAC=1;MLEAF=0.500;MQ=52.21;MQRankSum=-2.075;QD=5.35;ReadPosRankSum=0.238;SOR=1.884;set=HC	GT:AD:AF:DP	0/1:20,5:0.20:25
chr19	1037681	rs200699249	G	A	133.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.377;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=10.965;MLEAC=1;MLEAF=0.500;MQ=52.97;MQRankSum=-2.780;QD=4.61;ReadPosRankSum=0.216;SOR=2.245;set=HC	GT:AD:AF:DP	0/1:23,6:0.21:29
chr19	1037715	rs200177867	T	C	136.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.041;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=7.510;MLEAC=1;MLEAF=0.500;MQ=53.98;MQRankSum=-3.092;QD=3.91;ReadPosRankSum=1.687;SOR=2.270;set=HC	GT:AD:AF:DP	0/1:29,6:0.17:35
chr19	1037716	rs201532581	G	A	136.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.257;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=7.510;MLEAC=1;MLEAF=0.500;MQ=53.98;MQRankSum=-3.092;QD=3.91;ReadPosRankSum=1.730;SOR=2.270;set=HC	GT:AD:AF:DP	0/1:29,6:0.17:35
chr19	1037718	rs199741851	G	T	136.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.198;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=7.444;MLEAC=1;MLEAF=0.500;MQ=53.84;MQRankSum=-3.043;QD=4.02;ReadPosRankSum=1.718;SOR=2.279;set=HC	GT:AD:AF:DP	0/1:28,6:0.18:34
chr19	1037731	.	C	T	1957	.	AC=1;AF=0.500;AN=2;BRF=0.63;FR=0.5000;HP=4;HapScore=3;MGOF=211;MMLQ=28;MQ=49.05;NF=4;NR=5;PP=1957;QD=221.307912505;SC=ACACGCAGGGCGCCAACCAGA;SbPval=0.5;Source=Platypus;TC=26;TCF=13;TCR=13;TR=9;WE=1037739;WS=1037691;set=Platypus	GT:AD:AF:DP	1/0:17,9:0.35:26
chr19	1037749	rs77454210	G	A	67.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.663;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=4.549;MLEAC=1;MLEAF=0.500;MQ=55.37;MQRankSum=-2.819;QD=1.58;ReadPosRankSum=1.138;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:38,5:0.12:43
chr19	1037756	rs77830704	G	A	70.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.899;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=4.402;MLEAC=1;MLEAF=0.500;MQ=55.17;MQRankSum=-2.747;QD=1.73;ReadPosRankSum=0.578;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:36,5:0.12:41
chr19	1037766	rs78386506	G	A	67.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.032;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=4.406;MLEAC=1;MLEAF=0.500;MQ=55.37;MQRankSum=-2.819;QD=1.58;ReadPosRankSum=-0.190;SOR=1.811;set=HC	GT:AD:AF:DP	0/1:38,5:0.12:43
chr19	1037781	rs75676484	C	A	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.646;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=4.147;MLEAC=1;MLEAF=0.500;MQ=57.25;MQRankSum=-2.992;QD=0.77;ReadPosRankSum=-1.131;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:43,5:0.10:48
chr19	1037791	rs75577125	C	T	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.303;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=2.034;MLEAC=1;MLEAF=0.500;MQ=57.61;MQRankSum=-1.889;QD=0.78;ReadPosRankSum=-1.870;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:43,4:0.09:47
chr19	1037932	rs3848639	G	C	204.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.60;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr19	1042809	rs3764645	A	G	1098.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:60,52:0.46:112
chr19	1043864	rs4622634	G	C	1159.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:60,60:0.50:120
chr19	1044753	rs3764648	T	C	357.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:9,17:0.65:26
chr19	1047002	rs3752234	A	G	1502.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:68,68:0.50:136
chr19	1047161	rs3752237	A	G	4160.77	.	AC=1;AF=0.500;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	0/1:189,202:0.52:391
chr19	1048807	.	C	CA	147.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.076;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=6.648;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.92;ReadPosRankSum=0.832;SOR=0.116;set=HC	GT:AD:AF:DP	0/1:16,14:0.47:30
chr19	1049012	rs4147912	A	C	1237.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr19	1049466	.	GCCCCCCCACTCCCACCCCGTGAGC	G	697.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.732;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.36;ReadPosRankSum=1.572;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:17,21:0.55:38
chr19	1050781	rs145363837	AAATAATAATAATAAT	A,AAATAATAATAATAATAATAATAAT	589.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=16;set=Intersection	GT:AF:DP	1/2:0.73,0.27:15
chr19	1050836	rs55999131	T	A	661.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:15,23:0.61:38
chr19	1050874	rs12151021	A	G	2221.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr19	1051214	rs3752240	A	G	951.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:50,44:0.47:94
chr19	1051370	.	TACTGAGGTCCACGTGGGTAGGCAACCTTGCCCAAGGCTGGGTGTGACAC	T	2849	.	AC=1;AF=0.500;AN=2;BRF=0.31;FR=0.5000;HP=3;HapScore=1;MGOF=3;MMLQ=17;MQ=60.0;NF=4;NR=0;PP=2849;QD=20;SC=GGAAGCCGGGTACTGAGGTCC;SbPval=1.0;Source=Platypus;TC=16;TCF=8;TCR=8;TR=4;WE=1051426;WS=1051360;set=Platypus	GT:AD:AF:DP	0/1:12,4:0.25:16
chr19	1051751	rs3764651	A	G	108.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:10,6:0.38:16
chr19	1052005	rs3764652	C	T	1218.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:106,61:0.37:167
chr19	1053299	rs3829687	C	T	76.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.631;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.48;ReadPosRankSum=-0.991;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:9,5:0.36:14
chr19	1053524	rs3752241	C	G	1150.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:63,58:0.48:121
chr19	1053575	rs9282559	T	G	1245.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:38,56:0.60:94
chr19	1053677	rs3752242	G	A	1155.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:68,55:0.45:123
chr19	1054060	rs3752243	A	G	3977.77	.	AC=1;AF=0.500;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	0/1:243,183:0.43:426
chr19	1055191	rs3745842	G	A	2474.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:113,117:0.51:230
chr19	1056018	rs3833881	GC	G	2324.73	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:122,98:0.45:220
chr19	1056065	rs881768	A	G	1695.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;MQ=60.05;set=Intersection	GT:AD:AF:DP	0/1:118,81:0.41:199
chr19	1056492	rs3752246	G	C	10825.77	.	AC=2;AF=1.00;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	1/1:0,393:1.00:393
chr19	1059004	rs2279796	A	G	1172.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:73,55:0.43:128
chr19	1061698	.	CAA	C	100.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.185;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.15;ReadPosRankSum=-0.463;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:23,9:0.28:32
chr19	1062370	rs34606911	T	C	899.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:40,41:0.51:81
chr19	1063930	rs4807499	C	T	944.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:47,43:0.48:90
chr19	1064193	rs4147930	G	A	1300.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr19	1064453	rs4147931	G	C	100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.559;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.20;ReadPosRankSum=2.655;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:4,5:0.56:9
chr19	1065018	rs4147934	G	T	2196.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:2,81:0.98:83
chr19	1065044	rs4147935	C	T	1132.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:41,50:0.55:91
chr19	1065197	rs4147936	G	C	5772.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr19	1066256	rs4147938	G	A	960.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr19	1068734	rs3764653	T	C	4347.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.762;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=0.504;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.61;ReadPosRankSum=-1.640;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:98,113:0.54:211
chr19	1068738	rs1801284	G	A	4350.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.033;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.92;ReadPosRankSum=-1.354;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:96,112:0.54:208
chr19	1071312	rs4807506	C	T	1266.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr19	1073409	rs2074441	C	G	3063.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr19	1074000	rs2074442	A	T	1854.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr19	1074064	rs12610818	C	G	2139.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr19	1074252	rs11084881	T	G	6517.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr19	1074885	.	C	CGGGCGGGCGG	344.73	.	AC=1;AF=0.500;AN=2;DP=61;MQ=60.18;set=Intersection	GT:AD:AF:DP	0/1:16,12:0.43:28
chr19	1077985	rs7251797	A	G	1521.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:102,75:0.42:177
chr19	1078101	rs72975505	G	A	1012.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:27,43:0.61:70
chr19	1080189	rs2074453	G	C	5142.77	.	AC=1;AF=0.500;AN=2;DB;DP=638;set=Intersection	GT:AD:AF:DP	0/1:353,268:0.43:621
chr19	1080311	rs2074454	G	C	12839.77	.	AC=2;AF=1.00;AN=2;DB;DP=480;set=Intersection	GT:AD:AF:DP	1/1:0,475:1.00:475
chr19	1081120	rs8113708	A	G	2272.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr19	1081462	rs34275968	C	CG	434.73	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:23,16:0.41:39
chr19	1081617	rs10404947	A	G	3621.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr19	1085528	rs147365366	C	CT	727.73	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:30,23:0.43:53
chr19	1085966	rs3761028	A	G	8058.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr19	1086043	rs3761026	T	C	986.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:38,47:0.55:85
chr19	1090020	rs61585798	TG	T	677.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.24;SOR=2.494;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr19	1090803	rs3787016	A	G	6487.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr19	1094004	rs12459404	G	A	5708.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr19	1095151	rs10416031	A	G	2269.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr19	1095334	rs371018866	G	A	3158.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.222;ClippingRankSum=0.000;DB;DP=305;ExcessHet=3.0103;FS=2.466;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.36;ReadPosRankSum=0.926;SOR=0.556;set=HC	GT:AD:AF:DP	0/1:147,158:0.52:305
chr19	1095334	.	GCC	ACT	1079	.	AC=1;AF=0.500;AN=2;BRF=0.54;FR=0.5000;HP=4;HapScore=2;MGOF=2;MMLQ=24;MQ=60.0;NF=43;NR=36;PP=1079;QD=14.3350363907;SC=CGCCGCCGCCGCCGCTCGCAC;SbPval=0.3;Source=Platypus;TC=162;TCF=79;TCR=83;TR=79;WE=1095344;WS=1095324;set=Platypus	GT:AD:AF:DP	1/0:83,79:0.49:162
chr19	1095336	rs1046041	C	T	11002.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.72;SOR=0.774;set=HC	GT:AD:AF:DP	1/1:0,308:1.00:308
chr19	1147431	rs56808651	T	C	224.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.48;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr19	1149339	rs76603488	G	A	2806.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr19	1154317	rs112547682	G	A	101.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:13,6:0.32:19
chr19	1219191	rs2075605	A	G	474.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:24,24:0.50:48
chr19	1219274	rs34928889	G	A	1416.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:81,71:0.47:152
chr19	1222012	rs2075607	G	C	1205.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:75,62:0.45:137
chr19	1231142	rs8110590	T	C	1770.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:64,84:0.57:148
chr19	1242048	rs2074513	C	T	1797.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:94,91:0.49:185
chr19	1251781	rs2285811	A	G	6887.77	.	AC=1;AF=0.500;AN=2;DB;DP=683;set=Intersection	GT:AD:AF:DP	0/1:349,329:0.49:678
chr19	1254122	rs2301761	G	A	316.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:25,17:0.40:42
chr19	1256998	rs9823	C	T	1423.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:104,70:0.40:174
chr19	1268178	rs12975875	G	A	231.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr19	1270231	rs56378951	GC	G	2025.73	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:5,78:0.94:83
chr19	1270243	.	G	C	1062.77	.	AC=1;AF=0.500;AN=2;DP=82;set=Intersection	GT:AD:AF:DP	0/1:42,40:0.49:82
chr19	1271274	rs12609287	C	T	9296.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:2,343:0.99:345
chr19	1271529	rs4807050	C	T	1784.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr19	1272040	rs12488	T	C	5345.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr19	1274539	rs8108009	T	C	986.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr19	1277070	rs72979542	G	T	532.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:40,28:0.41:68
chr19	1277275	rs757292	G	C	3028.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr19	1278861	rs12460305	C	T	2670.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:130,132:0.50:262
chr19	1298418	rs34685801	TTA	T	1121.73	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:58,33:0.36:91
chr19	1299955	rs57847680	G	A	1425.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:74,69:0.48:143
chr19	1354983	rs10555657	AGCG	A	501.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.44;QD=41.81;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr19	1357082	rs713042	T	C	4297.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr19	1358726	rs2285972	C	T	2559.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:135,125:0.48:260
chr19	1360082	rs8109377	G	A	1541.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:75,71:0.49:146
chr19	1360575	rs3826942	G	A	5437.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr19	1364139	rs10570720	ACACT	A	7396.73	.	AC=1;AF=0.500;AN=2;DB;DP=408;MQ=60.08;set=Intersection	GT:AD:AF:DP	0/1:205,193:0.48:398
chr19	1364306	rs17673260	A	G	721.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:19,29:0.60:48
chr19	1366179	rs72377165	CGCTGGGGTCACCCCCAGA	C	856.73	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:38,24:0.39:62
chr19	1366422	rs2668418	C	G	2630.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr19	1367226	rs11668809	G	A	1638.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:108,85:0.44:193
chr19	1370675	rs12608765	C	G	887.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:19,41:0.68:60
chr19	1371354	rs2668424	T	C	2225.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:182,112:0.38:294
chr19	1388538	rs1142530	C	T	1474.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr19	1389064	rs7258846	G	T	8760.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr19	1389324	rs66919466	ACT	A	6090.73	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:7,174:0.96:181
chr19	1389517	rs11666067	C	A	8721.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	1/1:0,335:1.00:335
chr19	1391230	rs370098426	A	G	414.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:23,20:0.47:43
chr19	1397443	rs17851582	G	A	1226.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:92,65:0.41:157
chr19	1399056	rs55776826	C	T	9426.77	.	AC=2;AF=1.00;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	1/1:4,359:0.99:363
chr19	1399476	rs73515058	T	C	810.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:35,37:0.51:72
chr19	1407618	.	A	AGCC	70.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.036;ClippingRankSum=-0.000;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.15;ReadPosRankSum=-1.645;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr19	1421046	rs72458772	ACT	A	1083.73	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:31,30:0.49:61
chr19	1422299	rs2271055	T	C	1012.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:24,44:0.65:68
chr19	1434842	rs61735591	C	T	1929.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.339;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=1.872;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.03;ReadPosRankSum=1.948;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:80,95:0.54:175
chr19	1438865	rs7251165	C	T	203.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.108;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=1.342;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.36;ReadPosRankSum=-0.774;SOR=1.078;set=HC	GT:AD:AF:DP	0/1:25,13:0.34:38
chr19	1454985	.	AC	A	28	.	AC=1;AF=0.500;AN=2;BRF=0.55;FR=0.5338;HP=14;HapScore=2;MGOF=1;MMLQ=26;MQ=54.77;NF=0;NR=2;PP=28;QD=18.5;SC=TTCAATACCCACCCCCCCCCC;SbPval=1.0;Source=Platypus;TC=3;TCF=0;TCR=3;TR=2;WE=1454993;WS=1454975;set=Platypus	GT:AD:AF:DP	0/1:1,2:0.67:3
chr19	1458177	rs10402084	G	A	135.78	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr19	1460473	rs11668593	G	A	819.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:34,36:0.51:70
chr19	1467684	rs265273	A	C	2636.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr19	1467803	rs61749994	C	T	2619.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:117,120:0.51:237
chr19	1469030	rs265278	A	G	3470.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:129,157:0.55:286
chr19	1469530	rs166452	C	G	461.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.668;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.57;ReadPosRankSum=-0.283;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:36,25:0.41:61
chr19	1474932	rs144358010	TG	T	4381.73	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:127,147:0.54:274
chr19	1475391	rs166451	A	C	1364.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:53,60:0.53:113
chr19	1483673	rs11878809	G	A	983.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:43,45:0.51:88
chr19	1487561	rs62128466	C	G	2370.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:162,124:0.43:286
chr19	1487886	rs111625217	G	A	2885.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:95,125:0.57:220
chr19	1488147	rs4807120	C	T	1239.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:116,66:0.36:182
chr19	1489736	rs61015647	GC	G	3438.73	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:126,165:0.57:291
chr19	1489770	rs791468	T	G	3095.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:109,145:0.57:254
chr19	1490377	rs791469	T	G	481.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:15,20:0.57:35
chr19	1491171	rs791473	T	G	513.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:18,21:0.54:39
chr19	1495634	rs2277748	G	A	3249.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:132,153:0.54:285
chr19	1495723	rs76905339	C	G	836.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:22,32:0.59:54
chr19	1495756	rs78367532	C	T	319.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:13,13:0.50:26
chr19	1496263	rs2244686	A	G	658.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:52,31:0.37:83
chr19	1497121	rs2244801	G	T	458.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:12,20:0.62:32
chr19	1497466	rs80104934	G	A	4272.77	.	AC=1;AF=0.500;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	0/1:211,196:0.48:407
chr19	1497493	rs111564187	G	A	4724.77	.	AC=1;AF=0.500;AN=2;DB;DP=448;set=Intersection	GT:AD:AF:DP	0/1:229,217:0.49:446
chr19	1497543	rs1050017	A	G	10463.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.005;ClippingRankSum=0.000;DB;DP=536;ExcessHet=3.0103;FS=1.720;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.78;ReadPosRankSum=-0.414;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:262,267:0.50:529
chr19	1497547	rs78735375	C	A	6004.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.809;ClippingRankSum=0.000;DB;DP=553;ExcessHet=3.0103;FS=1.100;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.00;ReadPosRankSum=-0.707;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:268,278:0.51:546
chr19	1497762	rs112208222	G	A	5905.77	.	AC=1;AF=0.500;AN=2;DB;DP=488;set=Intersection	GT:AD:AF:DP	0/1:213,261:0.55:474
chr19	1506448	rs75714435	T	A	455.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:7,19:0.73:26
chr19	1507535	rs791461	T	C	2357.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:83,102:0.55:185
chr19	1508738	rs265296	G	A	496.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:23,25:0.52:48
chr19	1510661	rs265291	A	G	1285.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr19	1529550	rs2656863	A	G	640.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:41,33:0.45:74
chr19	1555551	rs2277752	T	C	553.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:29,27:0.48:56
chr19	1555880	rs75438199	C	T	258.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:10,13:0.57:23
chr19	1555993	.	C	T	516.77	.	AC=1;AF=0.500;AN=2;DP=32;set=Intersection	GT:AD:AF:DP	0/1:10,22:0.69:32
chr19	1567996	.	ACGC	A	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.79;ReadPosRankSum=-0.000;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:4,2:0.33:6
chr19	1605543	rs76421407	C	G	1355.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr19	1611856	rs62130064	G	A	2797.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr19	1615852	rs41275838	C	T	3431.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr19	1619333	rs1140828	G	A	1591.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.22;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr19	1619339	rs8140	T	C	1591.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.22;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr19	1619749	rs10648013	A	AGGGTG	441.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.90;QD=49.08;SOR=4.615;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr19	1624007	rs55677929	A	G	2466.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:153,125:0.45:278
chr19	1625811	rs11084904	T	C	778.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:31,41:0.57:72
chr19	1650134	rs1860661	A	G	647.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.262;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=11.406;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.20;ReadPosRankSum=-1.123;SOR=2.121;set=HC	GT:AD:AF:DP	0/1:47,32:0.41:79
chr19	1775123	rs79565776	T	TCGCC	198.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.293;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=23.803;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.14;ReadPosRankSum=-0.692;SOR=4.401;set=HC	GT:AD:AF:DP	0/1:40,8:0.17:48
chr19	1789556	rs12978609	C	T	1676.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:72,80:0.53:152
chr19	1792190	rs2286004	A	C	315.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:24,17:0.41:41
chr19	1796166	rs8100856	C	T	1917.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:134,103:0.43:237
chr19	1799662	rs57087033	C	T	153.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,7:0.64:11
chr19	1799763	.	C	CA	45.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.214;ClippingRankSum=0.000;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=1.796;QD=1.27;ReadPosRankSum=-1.140;SOR=0.927;set=HC	GT:AD:AF:DP	0/1:27,9:0.25:36
chr19	1802433	rs10418344	T	C	776.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:57,41:0.42:98
chr19	1802482	rs62127697	G	A	2301.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:96,118:0.55:214
chr19	1806210	rs7252063	A	C	1924.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr19	1809836	rs8107742	T	C	1109.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr19	1810605	rs716993	T	C	5693.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr19	1811547	rs12609187	A	G	9170.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	1/1:0,350:1.00:350
chr19	1817134	.	C	CCCAGATGGGG	1582.73	.	AC=2;AF=1.00;AN=2;DP=59;set=Intersection	GT:AD:AF:DP	1/1:2,51:0.96:53
chr19	1818459	rs1610106	A	G	1337.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr19	1818952	rs893538	C	G	2445.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:1,82:0.99:83
chr19	1819234	rs113598561	ACT	A	1635.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr19	1821637	rs4807145	A	G	4756.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr19	1825786	rs59277540	T	TA	432.70	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.281;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=3.279;MLEAC=1;MLEAF=0.500;MQ=60.48;MQRankSum=0.957;QD=6.98;ReadPosRankSum=1.289;SOR=0.262;set=HC	GT:AD:AF:DP	0/1:25,37:0.60:62
chr19	1828148	rs77108843	G	A	1291.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:86,63:0.42:149
chr19	1848243	rs12984809	A	G	516.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.20;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr19	1863628	rs112570276	A	C	39.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr19	1880950	rs4807160	T	C	1442.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:85,73:0.46:158
chr19	1905356	rs754066	G	A	1068.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:64,54:0.46:118
chr19	1905559	rs754065	G	C	377.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.632;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.51;ReadPosRankSum=1.226;SOR=0.547;set=HC	GT:AD:AF:DP	0/1:35,23:0.40:58
chr19	1908423	rs10408061	T	C	786.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:18,36:0.67:54
chr19	1908694	rs4806818	C	T	407.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:20,21:0.51:41
chr19	1912934	rs12984675	T	C	4536.77	.	AC=1;AF=0.500;AN=2;DB;DP=540;set=Intersection	GT:AD:AF:DP	0/1:287,220:0.43:507
chr19	1912986	rs76159002	C	T	4196.77	.	AC=1;AF=0.500;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	0/1:249,201:0.45:450
chr19	1914795	rs11666645	C	T	630.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:14,29:0.67:43
chr19	1914940	rs11084918	A	G	4611.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr19	1915118	rs10853957	A	C	1187.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr19	1918023	rs10415845	T	C	2014.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr19	1918760	rs376128461	CA	C	264.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.026;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.60;MQRankSum=0.745;QD=8.27;ReadPosRankSum=1.591;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:9,23:0.72:32
chr19	1924005	rs28719567	T	C	492.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:20,21:0.51:41
chr19	1924050	rs4807170	T	C	3420.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr19	1924076	rs7255232	TC	CT	5686.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr19	1952841	rs2396366	T	C	6412.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr19	1953013	.	G	GA	75.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.545;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.29;ReadPosRankSum=0.713;SOR=0.339;set=HC	GT:AD:AF:DP	0/1:24,9:0.27:33
chr19	1953637	rs35628322	C	T	1100.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr19	1954126	rs34622118	C	CA	10447.73	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr19	1954128	rs34797288	T	C	10456.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr19	1970013	rs35089119	C	G	253.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:11,12:0.52:23
chr19	1980031	rs371373465	C	T	3098.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:136,148:0.52:284
chr19	2037846	rs1064543	A	C,AC	828.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=25.90;SOR=1.112;set=HC	GT:AD:AF:DP	1/2:0,25,7:0.78,0.22:32
chr19	2040061	rs56197957	T	C	3060.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:130,144:0.53:274
chr19	2099111	rs12984606	T	G	1209.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:41,52:0.56:93
chr19	2099362	rs1051767	C	T	3345.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr19	2129067	.	A	G	1542	.	AC=2;AF=1.00;AN=2;BRF=0.58;FR=1.0000;HP=7;HapScore=1;MGOF=12;MMLQ=24;MQ=58.14;NF=31;NR=27;PP=1542;QD=27.1857105612;SC=GCCCGCCCCCACCGCGCATGG;SbPval=0.37;Source=Platypus;TC=67;TCF=39;TCR=28;TR=58;WE=2129075;WS=2129057;set=Platypus	GT:AD:AF:DP	1/1:9,58:0.87:67
chr19	2130562	rs142453291	C	A	1451.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:67,65:0.49:132
chr19	2208859	rs2301799	T	C	801.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:45,40:0.47:85
chr19	2214057	rs2074552	C	T	1028.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr19	2217023	rs141523228	C	T	2899.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:107,137:0.56:244
chr19	2244903	rs6510652	T	G	1321.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr19	2246652	rs2074861	G	A	1269.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr19	2248152	.	T	TGGAGTCCACCCTCCAGCCCCC	450.73	.	AC=1;AF=0.500;AN=2;DP=45;set=Intersection	GT:AD:AF:DP	0/1:25,11:0.31:36
chr19	2249477	rs10407022	G	T	4335.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr19	2250528	rs8112524	G	A	136.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.325;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=1.643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.95;ReadPosRankSum=-1.123;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:15,8:0.35:23
chr19	2251512	rs7252789	T	A	711.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr19	2251817	rs10417628	T	C	8743.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,318:1.00:318
chr19	2252799	rs146875753	C	A	3315.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:135,147:0.52:282
chr19	2252990	rs80043033	C	G	2497.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:105,119:0.53:224
chr19	2253590	rs3746158	C	T	4618.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:1,180:0.99:181
chr19	2255336	rs886363	A	G	1543.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr19	2271282	rs2074457	T	C	1322.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr19	2271323	rs2523175	A	G	2483.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr19	2271577	rs28384674	CT	C	3112.73	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr19	2271741	rs2074458	G	A	6684.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:1,245:1.00:246
chr19	2321854	rs886881	C	G	1427.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:93,69:0.43:162
chr19	2324384	rs10404826	A	G	672.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:15,26:0.63:41
chr19	2328281	rs11666344	G	A	470.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.708;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=3.426;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.39;ReadPosRankSum=-1.674;SOR=0.252;set=HC	GT:AD:AF:DP	0/1:18,20:0.53:38
chr19	2337377	rs3752204	C	G	2933.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr19	2339884	rs201440608	G	A	4183.77	.	AC=1;AF=0.500;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	0/1:197,195:0.50:392
chr19	2339949	rs3746285	T	C	2498.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.622;ClippingRankSum=0.000;DB;DP=239;ExcessHet=3.0103;FS=2.887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.50;ReadPosRankSum=-0.250;SOR=0.882;set=HC	GT:AD:AF:DP	0/1:127,111:0.47:238
chr19	2339958	rs1609752	T	C	7757.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr19	2340046	rs3746287	C	T	1521.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:62,72:0.54:134
chr19	2340050	rs1609753	C	T	1184.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:76,60:0.44:136
chr19	2340154	rs5826760	G	GC	3020.73	.	AC=2;AF=1.00;AN=2;DB;DP=88;MQ=60.37;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr19	2340235	rs12460384	C	T	363.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:12,16:0.57:28
chr19	2341047	rs55818311	C	T	4729.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr19	2341059	rs11880345	GT	AC	7042.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr19	2341093	rs76166147	CCTCCCTGGA	CA,C	2682.73	.	AC=1,0;AF=0.500,0.00;ALERT;AN=2;DB;DP=143;set=Intersection	GT:AF:DP	0/1:0.51:136
chr19	2341102	rs202164106	AG	A	2706.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.728;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=1.396;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.82;ReadPosRankSum=0.281;SOR=0.874;set=HC	GT:AD:AF:DP	0/1:60,70:0.54:130
chr19	2341103	.	G	A	2962	.	AC=1;AF=0.500;AN=2;BRF=0.39;FR=0.5000;HP=1;HapScore=1;MGOF=47;MMLQ=25;MQ=60.0;NF=24;NR=26;PP=2962;QD=20;SC=CCTCCCTGGAGGCCGCCCCAG;SbPval=0.61;Source=Platypus;TC=105;TCF=52;TCR=53;TR=50;WE=2341111;WS=2341083;set=Platypus	GT:AD:AF:DP	1/0:55,50:0.48:105
chr19	2343142	rs3746289	G	A	487.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.627;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=2.990;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.19;ReadPosRankSum=-0.960;SOR=0.313;set=HC	GT:AD:AF:DP	0/1:15,25:0.62:40
chr19	2353150	rs1128402	C	A	2845.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:110,125:0.53:235
chr19	2389872	rs891174	G	C	9247.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:0,342:1.00:342
chr19	2389954	rs891175	G	A	7550.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.90;SOR=1.338;set=HC	GT:AD:AF:DP	1/1:0,172:1.00:172
chr19	2389958	rs891176	T	A	7443.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.31;SOR=1.320;set=HC	GT:AD:AF:DP	1/1:0,168:1.00:168
chr19	2405559	rs7254110	A	G	3938.77	.	AC=1;AF=0.500;AN=2;DB;DP=486;set=Intersection	GT:AD:AF:DP	0/1:278,206:0.43:484
chr19	2405641	rs4807260	C	T	1776.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:116,88:0.43:204
chr19	2410156	rs34283458	G	A	441.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:39,21:0.35:60
chr19	2410332	rs3848635	T	C	2558.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:161,128:0.44:289
chr19	2413961	rs10153475	G	C	2953.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.858;ClippingRankSum=0.000;DB;DP=338;ExcessHet=3.0103;FS=1.821;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.76;ReadPosRankSum=2.961;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:198,139:0.41:337
chr19	2424938	rs7343178	A	G	495.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:27,23:0.46:50
chr19	2424961	rs148871041	G	A	1058.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:35,43:0.55:78
chr19	2425294	rs62122267	G	C	523.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:33,25:0.43:58
chr19	2426198	.	G	GGGTCATGGGGATGCATTTTGGTACCACCCTTTGTTCCAA	345.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.553;ClippingRankSum=0.000;DP=61;ExcessHet=3.0103;FS=2.755;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.35;ReadPosRankSum=1.283;SOR=1.877;set=HC	GT:AD:AF:DP	0/1:19,9:0.32:28
chr19	2426828	rs6945	G	C	355.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:55,22:0.29:77
chr19	2427125	rs62122268	C	T	580.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:49,26:0.35:75
chr19	2427152	rs12609742	A	G	607.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:42,26:0.38:68
chr19	2432555	rs736705	A	G	3694.77	.	AC=1;AF=0.500;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	0/1:245,188:0.43:433
chr19	2433890	rs11084940	A	G	5628.77	.	AC=1;AF=0.500;AN=2;DB;DP=550;set=Intersection	GT:AD:AF:DP	0/1:274,264:0.49:538
chr19	2434551	rs2304241	A	G	806.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:50,39:0.44:89
chr19	2434941	rs62122269	C	T	729.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:47,36:0.43:83
chr19	2438119	rs1865111	C	T	1100.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:69,53:0.43:122
chr19	2444363	rs11668494	A	G	3155.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:146,155:0.51:301
chr19	2444565	rs4806848	C	T	2326.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:103,105:0.50:208
chr19	2477277	rs2024144	C	T	890.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:21,35:0.62:56
chr19	2477665	rs3214277	A	AC	326.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.621;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.07;ReadPosRankSum=-1.511;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:11,14:0.56:25
chr19	2514966	rs67860726	CAG	C	226.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.952;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.10;ReadPosRankSum=3.478;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:17,11:0.39:28
chr19	2520716	rs1133692	T	C	3205.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:1,122:0.99:123
chr19	2520791	rs3764585	C	A	979.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:1,34:0.97:35
chr19	2524508	rs73516630	A	G	2158.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:137,112:0.45:249
chr19	2538074	rs71337145	C	CAAACA	262.73	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:15,6:0.29:21
chr19	2538668	rs16989558	A	G	1986.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:101,97:0.49:198
chr19	2538760	rs7250546	A	T	2518.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:4,105:0.96:109
chr19	2538808	rs142216309	C	T	600.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:26,27:0.51:53
chr19	2557272	rs71339116	C	T	505.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:20,22:0.52:42
chr19	2557330	rs201765743	GAC	G	1689.73	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:60,52:0.46:112
chr19	2557392	rs10421267	C	G	5293.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr19	2575984	.	C	CAG	2137	.	AC=1;AF=0.500;AN=2;BRF=0.55;FR=0.5000;HP=2;HapScore=2;MGOF=29;MMLQ=28;MQ=57.95;NF=38;NR=12;PP=2137;QD=43.22;SC=CAGGCAGACACACACATGCTC;SbPval=0.57;Source=Platypus;TC=102;TCF=77;TCR=25;TR=50;WE=2575992;WS=2575983;set=Platypus	GT:AD:AF:DP	0/1:52,50:0.49:102
chr19	2576075	.	GCAGACACACACA	G	2973	.	AC=1;AF=0.500;AN=2;BRF=0.59;FR=0.5000;HP=1;HapScore=1;MGOF=5;MMLQ=27;MQ=59.05;NF=25;NR=53;PP=2973;QD=20;SC=ACGCAGACATGCAGACACACA;SbPval=0.64;Source=Platypus;TC=216;TCF=74;TCR=142;TR=78;WE=2576094;WS=2576065;set=Platypus	GT:AD:AF:DP	0/1:138,78:0.36:216
chr19	2576272	rs1029753	T	C	3414.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr19	2717256	rs3745812	C	G	835.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:71,40:0.36:111
chr19	2717880	rs7343093	A	G	2917.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr19	2732741	rs9160	G	A	749.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:65,40:0.38:105
chr19	2732986	rs759073	T	C	7264.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:2,247:0.99:249
chr19	2733250	rs61736898	C	T	2799.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:146,123:0.46:269
chr19	2733501	rs139950756	CGA	C	177.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.289;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=1.761;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.96;ReadPosRankSum=0.423;SOR=1.075;set=HC	GT:AD:AF:DP	0/1:48,12:0.20:60
chr19	2755339	rs2238614	G	A	3520.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:3,137:0.98:140
chr19	2761334	rs3745813	C	A	644.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr19	2761358	rs3745814	G	A	1159.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr19	2761603	rs3745815	C	T	3681.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr19	2762395	rs45459194	C	T	771.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr19	2762585	rs2302491	A	C	4335.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:3,169:0.98:172
chr19	2765328	rs2302494	G	C	1348.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr19	2767192	rs1128925	G	T	2282.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr19	2790394	rs1736176	G	A	1756.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr19	2796021	rs1736180	G	A	4813.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr19	2807375	rs1640274	G	A	668.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr19	2810248	rs1736184	G	A	1142.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr19	2811788	rs2004186	T	C	784.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr19	2812153	rs941407	A	G	6421.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:1,240:1.00:241
chr19	2813000	rs1736185	A	G	1507.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr19	2819965	rs2741993	A	G	239.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr19	2820105	rs2537856	G	A	353.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr19	2833587	rs885705	C	G	636.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:24,28:0.54:52
chr19	2833802	rs867168	A	G	1944.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:67,86:0.56:153
chr19	2833864	rs867169	G	A	2077.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:94,97:0.51:191
chr19	2853566	rs10412087	A	G	3160.77	.	AC=1;AF=0.500;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	0/1:174,155:0.47:329
chr19	2867583	rs8104536	C	A	164.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:5,7:0.58:12
chr19	2873439	rs9304900	C	T	965.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr19	2877426	rs34849844	C	T	3243.77	.	AC=1;AF=0.500;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	0/1:224,169:0.43:393
chr19	2896818	rs8100809	C	T	4737.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr19	2896948	rs8104326	T	C	5829.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.90;SOR=0.879;set=HC	GT:AD:AF:DP	1/1:0,127:1.00:127
chr19	2896953	rs8101379	A	G	5989.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.78;SOR=0.844;set=HC	GT:AD:AF:DP	1/1:0,140:1.00:140
chr19	2900865	rs10420989	G	A	106.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr19	2900915	rs7255359	GA	AT	946.78	.	AC=2;AF=1.00;AN=2;DB;DP=24;JOINED;set=Intersection	GT:AD:AF:DP	1/1:1,22:0.96:23
chr19	2900930	rs12981209	C	T	946.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr19	2901114	rs11279103	CGCCGAAGTCT	C	2354.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr19	2915738	rs2043336	T	A	4865.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr19	2916048	rs2043335	T	A	2792.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr19	2916111	rs117724451	T	G	2109.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:101,99:0.49:200
chr19	2916358	rs34115054	C	CA	872.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr19	2917186	rs2288959	T	C	4600.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr19	2917287	rs2288958	C	A	5518.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr19	2917612	rs10410539	T	C	5876.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr19	2933480	rs3786948	C	T	1067.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr19	2934282	rs3746073	T	C	4234.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr19	2936443	rs7251272	A	G	405.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr19	2936623	rs4807371	C	T	2309.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr19	2939268	.	A	G	2501	.	AC=2;AF=1.00;AN=2;BRF=0.39;FR=1.0000;HP=3;HapScore=1;MGOF=19;MMLQ=24;MQ=59.72;NF=85;NR=35;PP=2501;QD=20;SC=AGGGAATGACACCACCCTTAC;SbPval=0.43;Source=Platypus;TC=126;TCF=91;TCR=35;TR=120;WE=2939276;WS=2939258;set=Platypus	GT:AD:AF:DP	1/1:6,120:0.95:126
chr19	2939289	.	A	C	1006	.	AC=1;AF=0.500;AN=2;BRF=0.4;FR=0.5000;HP=1;HapScore=1;MGOF=26;MMLQ=26;MQ=59.79;NF=40;NR=24;PP=1006;QD=16.262050196;SC=CCAAGGAGGCAAGGTTCCTGC;SbPval=0.27;Source=Platypus;TC=171;TCF=117;TCR=54;TR=64;WE=2939297;WS=2939279;set=Platypus	GT:AD:AF:DP	0/1:107,64:0.37:171
chr19	2939396	rs12609268	T	C	8872.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.758;ClippingRankSum=0.000;DB;DP=564;ExcessHet=3.0103;FS=1.103;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.82;ReadPosRankSum=-0.193;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:322,239:0.43:561
chr19	2939401	rs12610412	C	G	8824.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.671;ClippingRankSum=0.000;DB;DP=566;ExcessHet=3.0103;FS=2.460;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.67;ReadPosRankSum=0.982;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:328,235:0.42:563
chr19	2978135	rs445657	G	C	4098.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr19	2979962	rs58993753	C	CAAA	504.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.169;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=0.000;QD=21.03;ReadPosRankSum=-1.432;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:6,18:0.75:24
chr19	2980269	rs4807380	G	A	845.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr19	2981487	rs10407929	G	C	2767.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr19	2991814	rs428113	T	C	5652.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr19	2993427	rs435806	T	C	1350.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:100,72:0.42:172
chr19	2993918	.	CAA	C	103.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.776;ClippingRankSum=-0.000;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.43;ReadPosRankSum=1.097;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:4,7:0.64:11
chr19	2993946	rs35271493	G	A	623.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.10;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr19	2994107	rs34438430	C	CT	1625.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr19	2994814	rs439808	T	C	1882.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr19	2994837	rs401886	A	G	2063.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr19	2994885	rs11084986	G	T	915.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:40,46:0.53:86
chr19	2997790	rs14089	T	C	685.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:30,31:0.51:61
chr19	3000822	rs35046512	C	CT	102.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.731;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=0.956;QD=6.04;ReadPosRankSum=-1.516;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:7,10:0.59:17
chr19	3006236	rs3050847	A	AAT	1867.73	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:46,49:0.52:95
chr19	3009788	rs216284	T	C	538.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr19	3013616	rs216271	G	A	270.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:3,12:0.80:15
chr19	3014647	rs1844880	C	A	1485.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:70,71:0.50:141
chr19	3015545	rs12984941	C	T	186.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:13,8:0.38:21
chr19	3015937	rs67167576	CTGTTT	C	860.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.800;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=1.105;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.11;ReadPosRankSum=-1.397;SOR=0.898;set=HC	GT:AD:AF:DP	0/1:37,24:0.39:61
chr19	3028871	rs2288950	G	C	315.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:16,13:0.45:29
chr19	3045589	rs56801494	C	A	107.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.78;ReadPosRankSum=1.501;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:4,6:0.60:10
chr19	3053802	rs425485	T	C	997.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:52,48:0.48:100
chr19	3056213	.	G	A	28	.	AC=1;AF=0.500;AN=2;BRF=0.43;FR=0.5051;HP=2;HapScore=2;MGOF=11;MMLQ=22;MQ=60.0;NF=6;NR=0;PP=28;QD=10.4618687579;SC=GCCGAGGGCCGGCCGCTACCT;SbPval=1.0;Source=Platypus;TC=12;TCF=7;TCR=5;TR=6;WE=3056221;WS=3056209;set=Platypus	GT:AD:AF:DP	1/0:6,6:0.50:12
chr19	3061344	rs62125457	G	A	281.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:15,12:0.44:27
chr19	3110349	rs11085000	T	G	6306.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr19	3113305	rs1682811	G	C	1802.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr19	3119184	rs308046	T	G	4002.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr19	3119239	rs4900	C	T	7451.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:1,274:1.00:275
chr19	3119405	rs370286	TG	GT	7293.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr19	3136692	rs411210	T	C	485.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr19	3148819	rs8113569	G	T	463.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:34,24:0.41:58
chr19	3149990	rs170159	G	C	794.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr19	3150238	rs310680	A	G	6150.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr19	3155902	rs2074865	G	A	2211.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:126,108:0.46:234
chr19	3162909	rs1637656	C	T	5421.77	.	AC=1;AF=0.500;AN=2;DB;DP=498;set=Intersection	GT:AD:AF:DP	0/1:219,268:0.55:487
chr19	3186085	rs11551095	G	T	1351.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:49,64:0.57:113
chr19	3193180	rs538197	C	G	423.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:17,18:0.51:35
chr19	3193484	rs499877	A	G	597.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:18,25:0.58:43
chr19	3196122	rs311615	T	C	1598.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:104,81:0.44:185
chr19	3196308	rs201578716	G	A	2794.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:91,126:0.58:217
chr19	3198695	rs311620	C	G	234.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:15,11:0.42:26
chr19	3198755	rs2304247	C	T	904.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:55,43:0.44:98
chr19	3198777	rs311621	A	G	1018.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:68,54:0.44:122
chr19	3201328	rs62125906	G	A	480.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:18,20:0.53:38
chr19	3201695	rs311625	A	G	293.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:9,13:0.59:22
chr19	3204172	rs8106438	A	G	1065.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:78,53:0.40:131
chr19	3206235	rs482758	A	G	497.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:29,26:0.47:55
chr19	3207338	rs312068	T	C	4254.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.421;ClippingRankSum=0.000;DB;DP=299;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.52;ReadPosRankSum=-0.443;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:176,117:0.40:293
chr19	3207348	rs312069	G	C	3996.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.325;ClippingRankSum=0.000;DB;DP=314;ExcessHet=3.0103;FS=0.885;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.93;ReadPosRankSum=-0.220;SOR=0.649;set=HC	GT:AD:AF:DP	0/1:188,121:0.39:309
chr19	3284819	rs3746064	T	C	983.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:60,49:0.45:109
chr19	3285012	rs59656659	T	C	403.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:29,19:0.40:48
chr19	3285042	rs113646375	C	T	373.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:15,20:0.57:35
chr19	3293593	rs313784	A	G	1258.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:37,46:0.55:83
chr19	3366786	rs3764589	G	T	756.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:30,32:0.52:62
chr19	3381645	rs67426967	GC	G	3522.73	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:133,118:0.47:251
chr19	3435254	rs2072349	T	C	833.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:19,38:0.67:57
chr19	3448869	rs4807473	A	G	1483.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr19	3452683	rs8105687	A	G	9526.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:1,343:1.00:344
chr19	3456705	rs117299764	G	A	503.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:20,23:0.53:43
chr19	3478646	rs10413312	C	G	365.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:17,14:0.45:31
chr19	3480232	rs2240666	A	G	534.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.415;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.968;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.86;ReadPosRankSum=1.315;SOR=0.557;set=HC	GT:AD:AF:DP	0/1:40,28:0.41:68
chr19	3480358	rs2074961	T	C	622.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:119,42:0.26:161
chr19	3526452	rs2286543	A	G	967.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr19	3526786	rs2286546	G	A	556.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:8,22:0.73:30
chr19	3527110	rs10420193	G	T	3805.77	.	AC=1;AF=0.500;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	0/1:190,183:0.49:373
chr19	3533274	rs740681	G	A	898.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:38,41:0.52:79
chr19	3534655	rs740685	G	A	1373.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:72,56:0.44:128
chr19	3534696	rs740686	C	T	1621.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:87,72:0.45:159
chr19	3534842	rs10155	G	A	4510.77	.	AC=1;AF=0.500;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	0/1:186,206:0.53:392
chr19	3538638	rs8644	G	A	361.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.074;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=1.267;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.70;ReadPosRankSum=-0.281;SOR=1.041;set=HC	GT:AD:AF:DP	0/1:35,19:0.35:54
chr19	3538646	rs114420443	A	G	3294.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr19	3538647	rs113259909	C	CGTGGGTGCGTG	3342.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr19	3538654	rs1128872	G	C	3596.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr19	3539444	rs7258234	T	G	1013.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr19	3543397	rs12608919	C	T	671.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:40,36:0.47:76
chr19	3543478	.	GC	G	107.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.788;ClippingRankSum=0.000;DP=23;ExcessHet=3.0103;FS=13.244;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.99;ReadPosRankSum=0.045;SOR=0.467;set=HC	GT:AD:AF:DP	0/1:11,7:0.39:18
chr19	3544120	rs11667842	G	C	971.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:85,46:0.35:131
chr19	3544971	rs12976454	C	T	854.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:27,40:0.60:67
chr19	3546183	rs141514254	G	A	1954.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:100,95:0.49:195
chr19	3546340	rs11555328	G	A	2228.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:94,106:0.53:200
chr19	3546463	rs28528221	T	C	984.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:39,49:0.56:88
chr19	3546502	rs78952285	C	T	312.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:26,17:0.40:43
chr19	3548057	rs6510759	T	C	10057.77	.	AC=2;AF=1.00;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	1/1:2,389:0.99:391
chr19	3548313	rs2240752	T	C	847.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:1,30:0.97:31
chr19	3557005	rs1715092	A	G	504.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr19	3576314	rs35766767	CCTT	C	6505.73	.	AC=1;AF=0.500;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	0/1:172,169:0.50:341
chr19	3579000	rs1443	C	T	1102.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:43,50:0.54:93
chr19	3589768	rs28532669	G	A	963.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:23,43:0.65:66
chr19	3589941	rs78077103	G	T	1678.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:84,82:0.49:166
chr19	3595794	rs4523	A	G	4032.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr19	3610502	rs740349	G	A	447.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr19	3611146	rs2074786	A	G	2370.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr19	3611186	rs758016	C	T	5388.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.54;SOR=0.710;set=HC	GT:AD:AF:DP	1/1:0,121:1.00:121
chr19	3611190	rs758017	C	A	5413.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.01;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,123:1.00:123
chr19	3611765	rs2369188	A	G	5592.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr19	3611972	rs2158935	G	A	11811.77	.	AC=2;AF=1.00;AN=2;DB;DP=453;set=Intersection	GT:AD:AF:DP	1/1:0,445:1.00:445
chr19	3612914	rs6510763	T	C	3701.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr19	3613346	rs2074789	G	A	3799.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr19	3613400	rs2240504	C	G	5008.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr19	3613422	rs2074790	G	A	5812.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr19	3613596	rs57918402	A	G	4644.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr19	3614403	rs7255692	T	C	4344.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr19	3623229	rs7252821	A	T	216.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr19	3623505	rs7252742	C	T	1785.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr19	3623534	rs7253265	A	G	3158.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr19	3626476	rs4806945	T	C	1683.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr19	3633273	rs542690	G	C	2241.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr19	3637395	rs10408855	T	C	11843.77	.	AC=2;AF=1.00;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	1/1:0,440:1.00:440
chr19	3638041	rs1879038	G	C	1219.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr19	3639150	rs56125777	G	A	785.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr19	3641672	rs3815338	C	T	1589.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr19	3645947	rs12460780	G	A	7860.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chr19	3647440	rs4806948	A	G	2400.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr19	3653525	rs2074957	C	T	4363.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr19	3656652	rs10432303	G	A	1299.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr19	3660944	rs3826944	G	A	12882.77	.	AC=2;AF=1.00;AN=2;DB;DP=494;set=Intersection	GT:AD:AF:DP	1/1:2,484:1.00:486
chr19	3667461	rs7257360	T	C	2087.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr19	3728495	rs58440297	CCT	C	4648.73	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:127,122:0.49:249
chr19	3730041	rs7258176	C	T	8024.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr19	3731783	rs8101530	G	A	558.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:44,26:0.37:70
chr19	3731847	rs1879039	C	T	2223.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:112,101:0.47:213
chr19	3731985	rs1879040	G	A	3590.77	.	AC=1;AF=0.500;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	0/1:155,170:0.52:325
chr19	3733669	.	A	G	261.77	.	AC=1;AF=0.500;AN=2;DP=32;set=Intersection	GT:AD:AF:DP	0/1:18,14:0.44:32
chr19	3734175	rs3746122	G	C	880.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:25,35:0.58:60
chr19	3738402	rs62130650	C	A	536.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:19,25:0.57:44
chr19	3738649	rs599587	A	C	2546.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr19	3738971	rs600986	A	G	4644.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr19	3740658	rs10416362	T	G	1011.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:40,51:0.56:91
chr19	3745941	rs478723	G	C	457.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:22,22:0.50:44
chr19	3746087	rs501168	G	A	4214.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:2,161:0.99:163
chr19	3746207	rs624300	T	C	1090.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr19	3749971	rs7257905	A	G	197.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:21,12:0.36:33
chr19	3750205	rs10692689	T	TGG	3740.73	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:162,108:0.40:270
chr19	3750615	rs1046268	T	C	3816.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.390;ClippingRankSum=0.000;DB;DP=232;ExcessHet=3.0103;FS=2.282;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.89;ReadPosRankSum=-0.835;SOR=0.880;set=HC	GT:AD:AF:DP	0/1:120,106:0.47:226
chr19	3750622	rs1046271	A	C	3644.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.261;ClippingRankSum=0.000;DB;DP=217;ExcessHet=3.0103;FS=1.699;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.19;ReadPosRankSum=-0.223;SOR=0.835;set=HC	GT:AD:AF:DP	0/1:116,96:0.45:212
chr19	3750690	rs1046278	A	C	904.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:65,40:0.38:105
chr19	3752874	rs8102086	A	G	1839.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:112,91:0.45:203
chr19	3753148	rs10414283	A	C	754.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.630;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.72;ReadPosRankSum=0.399;SOR=0.791;set=HC	GT:AD:AF:DP	0/1:27,21:0.44:48
chr19	3753152	rs10411927	G	A	754.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.676;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.06;ReadPosRankSum=0.126;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:26,21:0.45:47
chr19	3753656	rs12609548	T	A	1088.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:44,55:0.56:99
chr19	3753769	rs3746120	C	T	2887.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:137,136:0.50:273
chr19	3753874	rs34868972	G	A	3481.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:171,161:0.48:332
chr19	3760334	rs60648147	C	A	268.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:17,14:0.45:31
chr19	3762698	rs13960	C	T	941.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:24,40:0.62:64
chr19	3762926	rs7245624	G	A	791.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:35,36:0.51:71
chr19	3767265	rs7239	C	T	796.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:48,35:0.42:83
chr19	3770965	rs79588413	G	A	1453.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:62,71:0.53:133
chr19	3771880	rs11085039	C	T	484.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:19,21:0.53:40
chr19	3772028	rs148374636	C	CGG	735.73	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:64,29:0.31:93
chr19	3772325	rs10419790	T	C	596.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:25,30:0.55:55
chr19	3779934	rs12610723	A	C	1342.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr19	3781557	rs12610731	C	T	3481.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:145,166:0.53:311
chr19	3784757	rs2074976	T	G	3189.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.15;SOR=0.868;set=HC	GT:AD:AF:DP	1/1:0,122:1.00:122
chr19	3785223	rs4807509	T	G	2538.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr19	3806162	rs8109765	T	C	1674.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:72,77:0.52:149
chr19	3811457	rs10413220	G	C	296.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.255;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=2.056;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.12;ReadPosRankSum=2.657;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:46,26:0.36:72
chr19	3819275	rs2301840	A	T	1172.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr19	3820191	rs2301843	C	T	1093.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:51,52:0.50:103
chr19	3820293	rs2301844	A	G	2808.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr19	3820305	rs2301845	T	G	2749.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr19	3820389	rs2301846	A	C	754.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:27,37:0.58:64
chr19	3820441	rs2301847	A	G	811.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr19	3821408	rs61742027	G	A	501.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:33,26:0.44:59
chr19	3821602	.	CTTTTTTT	C	641	.	AC=1;AF=0.500;AN=2;BRF=0.38;FR=0.5000;HP=20;HapScore=2;MGOF=19;MMLQ=15;MQ=58.35;NF=0;NR=6;PP=641;QD=107.333333333;SC=CTCCCAAAGCCTTTTTTTTTT;SbPval=1.0;Source=Platypus;TC=13;TCF=1;TCR=12;TR=6;WE=3821616;WS=3821592;set=Platypus	GT:AD:AF:DP	1/0:7,6:0.46:13
chr19	3822008	rs28510805	C	G	2745.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr19	3823192	rs34503630	T	C	2650.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:77,120:0.61:197
chr19	3823237	rs2240231	G	A	3757.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:129,178:0.58:307
chr19	3827734	rs62132979	G	T	597.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:41,29:0.41:70
chr19	3831198	rs12461577	A	G	592.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:21,29:0.58:50
chr19	3831449	rs2240232	G	A	918.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:31,45:0.59:76
chr19	3831525	rs2240233	C	A	1945.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:62,88:0.59:150
chr19	3831765	rs2240235	G	A	569.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:32,29:0.48:61
chr19	3833572	rs56713158	TA	T	869.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.391;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=2.147;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.00;ReadPosRankSum=0.633;SOR=0.468;set=HC	GT:AD:AF:DP	0/1:20,67:0.77:87
chr19	3869128	rs35860262	C	T	244.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:21,16:0.43:37
chr19	3902722	rs2060247	C	G	1803.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr19	3908201	rs3810373	T	C	815.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:59,41:0.41:100
chr19	3910933	rs4807527	G	A	2181.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:137,112:0.45:249
chr19	3911012	rs4807528	T	A	618.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:33,26:0.44:59
chr19	3917608	rs11366574	A	G	147.53	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.875;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=3.090;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.41;ReadPosRankSum=-0.980;SOR=2.093;set=HC	GT:AD:AF:DP	0/1:2,9:0.82:11
chr19	3918721	rs11667520	A	G	709.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:43,35:0.45:78
chr19	3920616	rs8108660	T	C	1006.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr19	3936405	rs141137993	C	CAA	147.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:18,7:0.28:25
chr19	3938782	rs12459191	C	T	1407.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.132;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=1.335;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.13;ReadPosRankSum=-0.154;SOR=0.786;set=HC	GT:AD:AF:DP	0/1:69,70:0.50:139
chr19	3938837	.	TTTTTG	T	31.07	.	AC=2;AF=1.00;AN=2;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.25;QD=7.77;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr19	3941212	rs112432096	G	A	1692.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.316;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=15.243;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=0.586;QD=17.63;ReadPosRankSum=0.610;SOR=0.805;set=HC	GT:AD:AF:DP	0/1:23,73:0.76:96
chr19	3941247	rs34077521	CT	C	125.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.350;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=4.868;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=0.000;QD=6.99;ReadPosRankSum=0.148;SOR=1.518;set=HC	GT:AD:AF:DP	0/1:5,13:0.72:18
chr19	3958397	rs7255123	A	G	1123.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:101,63:0.38:164
chr19	3960020	rs2304193	C	T	1688.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:143,88:0.38:231
chr19	3963744	rs34381972	C	G	1411.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:80,70:0.47:150
chr19	3964106	rs2278438	C	G	797.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:19,30:0.61:49
chr19	3964437	.	AAACCTCACCCTCACGCTCCCCGC	A	422.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.257;ClippingRankSum=0.000;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.19;ReadPosRankSum=-2.072;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:31,15:0.33:46
chr19	3964448	.	T	C	806	.	AC=1;AF=0.500;AN=2;BRF=0.21;FR=0.5000;HP=4;HapScore=2;MGOF=17;MMLQ=24;MQ=58.97;NF=0;NR=16;PP=806;QD=52.5482007842;SC=AACCTCACCCTCACGCTCCCC;SbPval=1.0;Source=Platypus;TC=55;TCF=1;TCR=54;TR=16;WE=3964466;WS=3964438;set=Platypus	GT:AD:AF:DP	1/0:39,16:0.29:55
chr19	3964458	.	CG	C	806	.	AC=1;AF=0.500;AN=2;BRF=0.21;FR=0.5000;HP=3;HapScore=2;MGOF=17;MMLQ=28;MQ=58.81;NF=0;NR=11;PP=806;QD=76.3636363636;SC=TCACGCTCCCCGCAACCTCAC;SbPval=1.0;Source=Platypus;TC=40;TCF=1;TCR=39;TR=11;WE=3964466;WS=3964438;set=Platypus	GT:AD:AF:DP	1/0:29,11:0.28:40
chr19	3977486	rs36527	A	G	3901.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr19	3979408	rs36526	A	G	5609.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr19	3980824	rs36525	A	G	3771.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr19	4024020	rs2028827	G	A	9721.77	.	AC=2;AF=1.00;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	1/1:0,371:1.00:371
chr19	4028067	rs4520954	C	T	6736.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr19	4028783	rs2289863	C	T	9258.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	1/1:5,337:0.99:342
chr19	4032949	rs895333	A	G	3499.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr19	4033244	rs749449	G	C	2892.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr19	4033462	rs7255988	T	C	9511.77	.	AC=2;AF=1.00;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	1/1:0,355:1.00:355
chr19	4033614	rs12460140	G	A	6017.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr19	4037525	rs2305106	C	T	7873.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr19	4042077	rs4410205	C	A	1968.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr19	4090572	rs6629	G	A	865.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:23,36:0.61:59
chr19	4097203	rs10681431	T	TA	57.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.81;ReadPosRankSum=0.469;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:5,7:0.58:12
chr19	4101062	rs10250	G	T	1130.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr19	4117528	rs8157	G	A	1274.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:81,65:0.45:146
chr19	4117705	rs350890	T	C	1891.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr19	4153659	rs350879	G	A	1593.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr19	4154910	rs35474881	C	T	3447.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:154,169:0.52:323
chr19	4156866	rs112691598	AC	A	1593.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.117;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=2.526;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.32;ReadPosRankSum=-0.009;SOR=1.107;set=HC	GT:AD:AF:DP	0/1:46,41:0.47:87
chr19	4156869	rs63310862	C	T	1602.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.080;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=2.339;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.61;ReadPosRankSum=-0.577;SOR=1.044;set=HC	GT:AD:AF:DP	0/1:48,43:0.47:91
chr19	4156881	rs350871	G	A	1399.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.096;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.94;ReadPosRankSum=-0.315;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:67,61:0.48:128
chr19	4159509	rs66603362	C	T	500.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:19,21:0.53:40
chr19	4169998	rs350852	G	A	729.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr19	4170378	rs350851	G	A	894.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr19	4174950	rs350845	A	G	3899.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr19	4177051	rs350844	A	G	1855.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr19	4177331	rs350843	A	C	431.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr19	4180690	rs7260071	T	G	3898.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr19	4180836	rs352493	C	T	4891.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr19	4198154	rs1963331	C	T	334.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:39,20:0.34:59
chr19	4198169	rs28615978	C	T	853.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:25,43:0.63:68
chr19	4199809	rs112892199	C	CA	1314.73	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:51,42:0.45:93
chr19	4199839	rs6510793	A	C	3165.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr19	4200156	rs2052191	G	A	672.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:25,32:0.56:57
chr19	4200206	rs2052192	A	G	380.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:17,17:0.50:34
chr19	4201805	rs11672646	G	T	345.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:7,16:0.70:23
chr19	4202683	rs352513	T	C	635.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr19	4202793	rs7260407	A	G	709.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:49,35:0.42:84
chr19	4207161	rs34976536	A	T	348.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:19,16:0.46:35
chr19	4208082	rs2240670	T	C	5255.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr19	4210017	rs67953324	G	A	381.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:33,22:0.40:55
chr19	4210035	rs75403641	T	C	988.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.542;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=3.226;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.18;ReadPosRankSum=-0.419;SOR=1.132;set=HC	GT:AD:AF:DP	0/1:28,47:0.63:75
chr19	4210356	rs12978469	G	A	1102.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:56,53:0.49:109
chr19	4210382	rs72980936	C	T	1090.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:48,50:0.51:98
chr19	4210401	rs60239405	C	CA	3734.73	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr19	4210465	rs12710072	A	G	1546.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.37;QD=26.67;SOR=1.382;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr19	4212808	rs58559746	C	A	744.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr19	4216318	rs45510899	G	T	2246.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:106,103:0.49:209
chr19	4216910	rs10413818	G	A	2662.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr19	4217207	rs353693	T	G	4029.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr19	4217587	rs58333777	G	A	149.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr19	4217956	rs6510794	A	G	177.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:21,12:0.36:33
chr19	4219541	rs79297355	A	T	2594.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:111,123:0.53:234
chr19	4290586	rs150781210	G	A	119.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.487;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=3.336;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.94;ReadPosRankSum=-0.657;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:109,19:0.15:128
chr19	4292961	.	C	CT	295.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.599;ClippingRankSum=0.000;DP=153;ExcessHet=3.0103;FS=1.973;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.44;ReadPosRankSum=1.324;SOR=0.430;set=HC	GT:AD:AF:DP	0/1:87,34:0.28:121
chr19	4294551	rs62129297	T	C	511.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:49,26:0.35:75
chr19	4297968	rs6510801	C	T	2624.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:160,133:0.45:293
chr19	4306311	rs4807578	T	C	825.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:31,39:0.56:70
chr19	4308098	rs11669091	T	C	343.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:57,20:0.26:77
chr19	4311977	rs45575337	C	T	1211.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:69,62:0.47:131
chr19	4324363	rs73534881	A	T	415.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:30,20:0.40:50
chr19	4328755	rs79657645	G	C	891.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:91,46:0.34:137
chr19	4328860	rs11882358	T	C	1523.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:163,88:0.35:251
chr19	4333711	rs7247504	C	T	162.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:18,9:0.33:27
chr19	4353095	.	G	A	100.77	.	AC=1;AF=0.500;AN=2;DP=23;set=Intersection	GT:AD:AF:DP	0/1:15,7:0.32:22
chr19	4357555	rs4807583	A	G	1478.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:184,85:0.32:269
chr19	4402840	rs77734548	G	A	56.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr19	4408751	rs243347	A	G	1276.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr19	4442999	rs243383	T	G	4249.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr19	4453235	rs72990638	C	T	626.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr19	4453324	rs376965	T	C	2526.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr19	4454000	rs11909	G	A	3890.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr19	4457496	rs10425328	CG	GC	2460.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr19	4457792	rs12977256	T	A	560.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.60;QD=25.49;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr19	4472322	rs61606737	C	T	1821.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:70,91:0.57:161
chr19	4472460	rs182316418	G	T	32.31	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.674;ClippingRankSum=-0.000;DB;DP=20;ExcessHet=3.0103;FS=6.021;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=8.08;ReadPosRankSum=0.674;SOR=2.788;set=HC	GT:AD:AF:DP	1/1:1,3:0.75:4
chr19	4472484	.	G	GAGGC	617	.	AC=1;AF=0.500;AN=2;BRF=0.52;FR=0.5000;HP=1;HapScore=2;MGOF=28;MMLQ=24;MQ=55.62;NF=1;NR=12;PP=617;QD=49.4615384615;SC=CCCCGGGCCGGAGGCGGGCAC;SbPval=0.74;Source=Platypus;TC=30;TCF=3;TCR=27;TR=13;WE=4472492;WS=4472474;set=Platypus	GT:AD:AF:DP	1/0:17,13:0.43:30
chr19	4475362	rs2288932	T	G	2012.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:129,99:0.43:228
chr19	4475606	rs3816048	T	C	2535.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr19	4488632	rs10422594	C	T	382.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:11,15:0.58:26
chr19	4488926	rs10421685	G	A	4391.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.11;SOR=1.552;set=HC	GT:AD:AF:DP	1/1:0,162:1.00:162
chr19	4491476	rs11878416	G	C	832.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr19	4493708	rs892161	A	G	1529.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:60,75:0.56:135
chr19	4496198	rs2288930	A	G	2674.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr19	4498154	rs919798	G	A	1568.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.58;SOR=1.209;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr19	4498157	rs919797	G	A	1568.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.82;SOR=1.148;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr19	4498245	rs2288926	A	G	1066.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr19	4498440	rs2288924	T	C	816.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:44,42:0.49:86
chr19	4498700	rs10406139	A	T	681.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr19	4499023	rs67274054	C	T	215.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:27,12:0.31:39
chr19	4499632	rs72100503	AAGCTGGCCGGGGAGG	A	3397.73	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr19	4502201	rs8887	T	C	2692.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.65;SOR=1.168;set=HC	GT:AD:AF:DP	1/1:0,105:1.00:105
chr19	4502282	rs13041	C	T	704.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.63;QD=41.46;SOR=2.712;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr19	4502287	rs7254167	G	T	677.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.72;QD=45.18;SOR=2.448;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr19	4505110	rs77162490	T	C	428.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:20,21:0.51:41
chr19	4508945	rs8105775	A	G	5959.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr19	4510389	rs8105610	C	A	863.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.515;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.080;QD=9.71;ReadPosRankSum=-1.715;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:47,42:0.47:89
chr19	4510530	rs7250947	G	A	2894.77	.	AC=1;AF=0.500;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	0/1:211,149:0.41:360
chr19	4511140	rs7255715	C	G	4847.77	.	AC=1;AF=0.500;AN=2;DB;DP=520;set=Intersection	GT:AD:AF:DP	0/1:285,225:0.44:510
chr19	4511350	rs7259721	T	A	13873.77	.	AC=1;AF=0.500;AN=2;DB;DP=579;set=Intersection	GT:AD:AF:DP	0/1:105,468:0.82:573
chr19	4511365	rs116973517	C	G	3532.77	.	AC=1;AF=0.500;AN=2;DB;DP=601;set=Intersection	GT:AD:AF:DP	0/1:402,191:0.32:593
chr19	4511375	.	CCA	C	644.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.754;ClippingRankSum=0.000;DP=604;ExcessHet=3.0103;FS=33.595;MLEAC=1;MLEAF=0.500;MQ=58.52;MQRankSum=-9.887;QD=1.13;ReadPosRankSum=-7.991;SOR=3.948;set=HC	GT:AD:AF:DP	0/1:518,55:0.10:573
chr19	4511379	.	G	GAC	617.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.683;ClippingRankSum=0.000;DP=588;ExcessHet=3.0103;FS=30.467;MLEAC=1;MLEAF=0.500;MQ=58.75;MQRankSum=-11.202;QD=1.06;ReadPosRankSum=-8.094;SOR=3.909;set=HC	GT:AD:AF:DP	0/1:527,54:0.09:581
chr19	4511453	rs7255187	G	A	7669.77	.	AC=1;AF=0.500;AN=2;DB;DP=639;set=Intersection	GT:AD:AF:DP	0/1:275,357:0.56:632
chr19	4511525	rs7256712	A	G	8710.77	.	AC=1;AF=0.500;AN=2;DB;DP=697;set=Intersection	GT:AD:AF:DP	0/1:285,406:0.59:691
chr19	4511647	rs7256387	C	G	7473.77	.	AC=1;AF=0.500;AN=2;DB;DP=535;set=Intersection	GT:AD:AF:DP	0/1:206,319:0.61:525
chr19	4511725	rs73920825	T	C	7344.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.547;ClippingRankSum=0.000;DB;DP=417;ExcessHet=3.0103;FS=8.171;MLEAC=1;MLEAF=0.500;MQ=58.61;MQRankSum=-7.338;QD=17.74;ReadPosRankSum=-7.681;SOR=0.960;set=HC	GT:AD:AF:DP	0/1:225,189:0.46:414
chr19	4511730	rs62115190	T	C	7115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.289;ClippingRankSum=0.000;DB;DP=437;ExcessHet=3.0103;FS=10.602;MLEAC=1;MLEAF=0.500;MQ=58.77;MQRankSum=-7.064;QD=16.47;ReadPosRankSum=-6.231;SOR=0.999;set=HC	GT:AD:AF:DP	0/1:236,196:0.45:432
chr19	4511830	rs7257142	A	G	7633.77	.	AC=1;AF=0.500;AN=2;DB;DP=954;set=Intersection	GT:AD:AF:DP	0/1:547,391:0.42:938
chr19	4511890	rs200897749	G	A	207.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.224;ClippingRankSum=0.000;DB;DP=881;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.32;MQRankSum=-2.981;QD=0.24;ReadPosRankSum=1.113;SOR=0.791;set=HC	GT:AD:AF:DP	0/1:777,97:0.11:874
chr19	4511920	rs28460600	T	C	12919.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.156;ClippingRankSum=0.000;DB;DP=837;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.40;MQRankSum=-5.841;QD=15.58;ReadPosRankSum=-2.542;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:342,487:0.59:829
chr19	4511927	rs10422025	G	A	3560.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.606;ClippingRankSum=0.000;DB;DP=802;ExcessHet=3.0103;FS=0.694;MLEAC=1;MLEAF=0.500;MQ=59.37;MQRankSum=-15.238;QD=4.47;ReadPosRankSum=-7.315;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:658,138:0.17:796
chr19	4511929	rs10424401	A	G	3695.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.404;ClippingRankSum=0.000;DB;DP=798;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.37;MQRankSum=-15.607;QD=4.67;ReadPosRankSum=-7.040;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:660,132:0.17:792
chr19	4511935	rs113821070	T	C	2818.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.412;ClippingRankSum=0.000;DB;DP=796;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.36;MQRankSum=-16.985;QD=3.57;ReadPosRankSum=-8.096;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:675,114:0.14:789
chr19	4511948	rs73920826	A	G	1394.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.058;ClippingRankSum=0.000;DB;DP=787;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.56;MQRankSum=-16.973;QD=1.79;ReadPosRankSum=-7.889;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:703,76:0.10:779
chr19	4511955	rs7260518	T	C	21909.77	.	AC=2;AF=1.00;AN=2;DB;DP=795;set=Intersection	GT:AD:AF:DP	1/1:0,787:1.00:787
chr19	4512409	rs10410197	T	C	4198.77	.	AC=1;AF=0.500;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	0/1:216,190:0.47:406
chr19	4512514	rs7259625	G	C	5069.77	.	AC=1;AF=0.500;AN=2;DB;DP=501;set=Intersection	GT:AD:AF:DP	0/1:249,245:0.50:494
chr19	4512613	.	T	G	1382	.	AC=1;AF=0.500;AN=2;FR=0.5000;HP=2;HapScore=1;MGOF=48;MMLQ=24;MQ=59.53;NF=25;NR=46;PP=1382;QD=19.9545241204;SC=TGTCCACGCCTGTCTGGATGG;SbPval=0.88;Source=Platypus;TC=219;TCF=98;TCR=121;TR=71;WE=4512621;WS=4512603;set=Platypus	GT:AD:AF:DP	1/0:148,71:0.32:219
chr19	4512669	rs55901236	T	C	6065.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:2,226:0.99:228
chr19	4513143	.	CA	TG	2947	.	AC=2;AF=1.00;AN=2;BRF=0.58;FR=1.0000;HP=1;HapScore=1;MGOF=16;MMLQ=28;MQ=51.25;NF=97;NR=41;PP=2947;QD=20;SC=TTCATGGCACCAGTCACCCCA;SbPval=0.7;Source=Platypus;TC=157;TCF=105;TCR=52;TR=138;WE=4513152;WS=4513133;set=Platypus	GT:AD:AF:DP	1/1:19,138:0.88:157
chr19	4513559	rs4807597	A	G	6921.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:1,247:1.00:248
chr19	4525046	rs1610090	A	G	4753.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr19	4525217	rs11670485	G	A	816.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:15,35:0.70:50
chr19	4529622	rs200315969	TACACACACACACACACAC	TACACACAC,T	387.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=20;set=Intersection	GT:AF:DP	1/1:1.00:7
chr19	4534014	rs11085080	G	A	1089.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:65,56:0.46:121
chr19	4538599	rs966384	G	A	2214.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:58,95:0.62:153
chr19	4539086	rs7254885	A	G	247.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:8,12:0.60:20
chr19	4544645	rs28731213	T	A	636.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.041;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.21;ReadPosRankSum=-1.176;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:18,19:0.51:37
chr19	4546592	rs112691576	T	TTTAA	672.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.570;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=7.877;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.39;ReadPosRankSum=-0.091;SOR=2.093;set=HC	GT:AD:AF:DP	0/1:15,18:0.55:33
chr19	4548015	rs4807602	G	A	995.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:32,46:0.59:78
chr19	4548245	rs10853972	C	A	4328.77	.	AC=1;AF=0.500;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	0/1:215,204:0.49:419
chr19	4550383	rs28667487	G	T	400.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:34,21:0.38:55
chr19	4550698	rs2043328	C	T	398.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr19	4557056	rs10422881	A	C	1794.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:97,86:0.47:183
chr19	4558431	rs2304213	C	G	238.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.339;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=3.568;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.96;ReadPosRankSum=-0.258;SOR=1.536;set=HC	GT:AD:AF:DP	0/1:16,14:0.47:30
chr19	4682878	rs148398571	CAG	C	184.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.484;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=1.917;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.99;ReadPosRankSum=0.218;SOR=0.497;set=HC	GT:AD:AF:DP	0/1:162,25:0.13:187
chr19	4684642	rs8105807	A	G	2480.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:103,120:0.54:223
chr19	4685276	rs10421782	A	C	4516.77	.	AC=1;AF=0.500;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	0/1:224,212:0.49:436
chr19	4700187	rs2277735	A	G	1170.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:50,58:0.54:108
chr19	4714044	rs2277733	T	C	456.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:17,21:0.55:38
chr19	4714468	rs7251000	C	T	1378.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr19	4720031	rs3833278	C	CCCT	1199.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.759;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.67;ReadPosRankSum=-0.960;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:30,31:0.51:61
chr19	4720042	rs11672100	G	T	1224.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.522;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.12;ReadPosRankSum=-1.043;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:28,30:0.52:58
chr19	4720052	rs3833277	G	GC	933.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.055;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.06;ReadPosRankSum=0.591;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:26,23:0.47:49
chr19	4722408	rs116853154	T	C	372.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:9,16:0.64:25
chr19	4769740	rs11878617	C	A	2457.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:84,110:0.57:194
chr19	4770870	rs34288325	CT	C	393.73	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:13,13:0.50:26
chr19	4772202	rs3760955	A	C	2449.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:137,121:0.47:258
chr19	4772449	rs2885717	C	T	817.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:29,24:0.45:53
chr19	4772463	rs3760951	C	T	730.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:23,19:0.45:42
chr19	4818378	rs7255265	T	C	4119.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr19	4818487	rs10415014	CC	AG	826.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr19	4844665	rs36066928	TC	T	2243.73	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr19	4847713	rs9973235	A	G	1571.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:2,57:0.97:59
chr19	4847868	rs10406652	G	A	5908.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.555;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=3.627;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=43.45;ReadPosRankSum=-0.712;SOR=0.692;set=HC	GT:AD:AF:DP	1/1:1,135:0.99:136
chr19	4847874	rs9304915	A	G	5905.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.195;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=3.627;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=43.42;ReadPosRankSum=-0.596;SOR=0.692;set=HC	GT:AD:AF:DP	1/1:1,135:0.99:136
chr19	4852106	rs2271058	A	G	20842.77	.	AC=2;AF=1.00;AN=2;DB;DP=771;set=Intersection	GT:AD:AF:DP	1/1:2,764:1.00:766
chr19	4859937	rs8289	T	C	2083.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr19	4890914	rs2656938	A	G	230.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr19	4896948	rs35308440	C	CT	818.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.292;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=0.974;QD=10.77;ReadPosRankSum=0.142;SOR=0.597;set=HC	GT:AD:AF:DP	0/1:26,50:0.66:76
chr19	4902754	rs2779168	G	A	7264.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr19	4941456	rs2251519	C	T	2872.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr19	4944555	rs2602730	G	A	4465.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:2,170:0.99:172
chr19	4944596	rs2251117	T	C	2467.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:2,92:0.98:94
chr19	4945914	rs2250982	A	C	410.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.08;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr19	4945917	rs2250981	C	T	410.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.08;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr19	4945974	rs2250978	T	C	376.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr19	4954454	rs2247238	C	T	1351.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr19	4954679	rs55946225	G	GC	1973.73	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr19	5041049	rs11878982	C	T	701.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:21,27:0.56:48
chr19	5041178	rs2240678	T	C	6634.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr19	5047442	rs141865002	T	TG	865.73	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:43,36:0.46:79
chr19	5070815	rs61279316	C	T	1337.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:46,57:0.55:103
chr19	5110794	rs2613739	A	G	611.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:50,30:0.38:80
chr19	5111994	rs2613736	A	G	1728.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr19	5131607	rs111269836	A	G	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.792;ClippingRankSum=-0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.25;ReadPosRankSum=-1.465;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:2,5:0.71:7
chr19	5131955	rs45459493	C	T	1200.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.132;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=0.616;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.22;ReadPosRankSum=-1.167;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:82,64:0.44:146
chr19	5132051	rs2620839	G	A	1391.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr19	5135392	rs2620836	A	G	7772.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr19	5137192	rs2613790	C	T	614.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:72,36:0.33:108
chr19	5137199	rs113545259	T	TC	781.73	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:84,36:0.30:120
chr19	5137846	rs2613786	G	A	570.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:20,24:0.55:44
chr19	5174025	rs12975415	A	G	1492.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.326;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=-1.866;QD=17.36;ReadPosRankSum=-0.456;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:46,40:0.47:86
chr19	5174030	rs2620822	A	G	1647.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.423;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-1.776;QD=17.53;ReadPosRankSum=-1.341;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:48,46:0.49:94
chr19	5174180	rs2620821	C	T	957.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:58,49:0.46:107
chr19	5206775	rs1143700	A	G	5662.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:5,226:0.98:231
chr19	5207878	rs12979222	T	A	734.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:39,37:0.49:76
chr19	5210782	rs1143698	G	A	5382.77	.	AC=1;AF=0.500;AN=2;DB;DP=626;set=Intersection	GT:AD:AF:DP	0/1:351,265:0.43:616
chr19	5211568	rs55858361	G	A	975.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:27,41:0.60:68
chr19	5211967	rs35175880	C	T	711.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:28,28:0.50:56
chr19	5214533	rs9304921	A	G	7419.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr19	5214697	rs4807697	A	G	8691.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:0,327:1.00:327
chr19	5216896	rs5826875	C	CG	422.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:1,16:0.94:17
chr19	5219899	rs12981952	G	A	334.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:20,18:0.47:38
chr19	5220900	rs10412973	T	C	603.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr19	5222071	rs3746132	G	C	2767.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr19	5225555	rs35664173	C	CG	93.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.080;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.86;ReadPosRankSum=-0.214;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:10,6:0.38:16
chr19	5225802	rs10415592	G	A	1726.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:115,88:0.43:203
chr19	5239113	rs36155090	A	G	359.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.203;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.79;ReadPosRankSum=0.167;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:34,19:0.36:53
chr19	5239171	.	AGG	A	84.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.668;ClippingRankSum=-0.000;DP=19;ExcessHet=3.0103;FS=2.808;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.41;ReadPosRankSum=1.437;SOR=1.518;set=HC	GT:AD:AF:DP	0/1:5,4:0.44:9
chr19	5240193	rs35072097	TC	T	340.73	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:9,13:0.59:22
chr19	5250958	rs10598598	CGGGGGGGGGG	C	377.74	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.37;QD=37.77;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr19	5255992	rs34548642	A	AT	168.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:16,12:0.43:28
chr19	5256251	rs59925916	G	GT	303.73	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:26,23:0.47:49
chr19	5257341	rs112290142	G	A	1900.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:67,92:0.58:159
chr19	5260878	rs36016542	T	C	5656.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr19	5260879	rs10708972	GT	G	5647.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr19	5260933	rs7246162	A	T	1772.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr19	5263061	rs55840918	G	T	976.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr19	5264967	rs4807017	A	G	4730.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:4,188:0.98:192
chr19	5265222	rs4807703	G	A	730.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:25,31:0.55:56
chr19	5455422	rs4375786	T	C	801.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr19	5455611	rs2240743	C	T	4680.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:2,169:0.99:171
chr19	5455735	rs2240744	G	A	6465.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:1,236:1.00:237
chr19	5455796	rs420325	A	G	8254.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.28;SOR=0.763;set=HC	GT:AD:AF:DP	1/1:0,234:1.00:234
chr19	5455796	.	AGTGG	GGTGA,GGTGG	1412	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.49;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=17;MMLQ=24;MQ=60.0;NF=30,71;NR=41,84;PP=1098,1412;QD=16.2178573924;SC=CCGCGCAGGCAGTGGTACGGG;SbPval=0.69;Source=Platypus;TC=155;TCF=71;TCR=84;TR=71,155;WE=5455808;WS=5455786;set=Platypus	GT:AF:DP	0/1:0.46:155
chr19	5455800	rs2240745	G	A	2278.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.394;ClippingRankSum=0.000;DB;DP=241;ExcessHet=3.0103;FS=3.596;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.53;ReadPosRankSum=-0.854;SOR=0.847;set=HC	GT:AD:AF:DP	0/1:127,112:0.47:239
chr19	5455971	rs8103406	G	T	10469.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.13;SOR=0.879;set=HC	GT:AD:AF:DP	1/1:0,232:1.00:232
chr19	5455978	rs8107825	T	C	11119.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.39;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,245:1.00:245
chr19	5455990	rs17304380	G	A	3403.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:128,159:0.55:287
chr19	5456450	rs8111108	T	C	11948.77	.	AC=2;AF=1.00;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	1/1:1,439:1.00:440
chr19	5456930	rs2240747	A	C	226.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:16,10:0.38:26
chr19	5592769	rs138974953	G	A	1261.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:47,61:0.56:108
chr19	5595354	rs10413286	T	C	872.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr19	5598801	rs75051036	C	T	503.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:49,29:0.37:78
chr19	5600370	rs2285969	A	G	2662.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:111,128:0.54:239
chr19	5613450	rs142593043	C	T	3017.77	.	AC=1;AF=0.500;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	0/1:202,154:0.43:356
chr19	5661896	.	AT	A	597.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.200;ClippingRankSum=0.000;DP=107;ExcessHet=3.0103;FS=6.218;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=1.272;QD=8.19;ReadPosRankSum=-0.505;SOR=1.616;set=HC	GT:AD:AF:DP	0/1:18,55:0.75:73
chr19	5661945	rs144191205	G	C	464.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:19,20:0.51:39
chr19	5663920	rs3745628	T	G	3100.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:1,118:0.99:119
chr19	5667204	rs148831822	AC	A	324.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.376;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=1.656;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.03;ReadPosRankSum=1.456;SOR=0.519;set=HC	GT:AD:AF:DP	0/1:131,29:0.18:160
chr19	5687059	rs113901360	G	C	1446.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr19	5691531	rs45583031	C	T	341.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:18,18:0.50:36
chr19	5692311	rs3818815	G	C	1833.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr19	5694630	rs2436514	C	T	1697.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr19	5694903	rs151025018	C	G	1853.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:87,89:0.51:176
chr19	5696146	rs3745624	G	A	6030.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr19	5696245	rs4073993	A	G	4204.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr19	5707204	rs945828	T	C	3525.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr19	5707628	rs3737237	G	A	578.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:25,25:0.50:50
chr19	5746121	rs77656808	C	CA	1194.73	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:18,37:0.67:55
chr19	5749070	rs58136456	C	T	3322.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:165,166:0.50:331
chr19	5759231	rs11879365	T	G	2526.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr19	5766090	rs2446200	T	C	2351.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr19	5768331	rs10680062	T	TTTTA	1883.73	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:3,50:0.94:53
chr19	5778691	rs141590059	C	T	415.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:51,23:0.31:74
chr19	5788228	rs113274115	GCA	G	205.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.011;ClippingRankSum=0.000;DB;DP=501;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=4.137;QD=0.47;ReadPosRankSum=-1.151;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:394,46:0.10:440
chr19	5791015	.	G	A	1135.77	.	AC=1;AF=0.500;AN=2;DP=140;set=Intersection	GT:AD:AF:DP	0/1:80,58:0.42:138
chr19	5824420	rs71934499	GGT	G	686.73	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:75,35:0.32:110
chr19	5828258	.	CTG	C	1959.73	.	AC=1;AF=0.500;AN=2;DP=85;set=Intersection	GT:AD:AF:DP	0/1:34,50:0.60:84
chr19	5831724	rs112313064	T	C	533.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.767;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=1.313;MLEAC=1;MLEAF=0.500;MQ=40.14;MQRankSum=0.520;QD=15.25;ReadPosRankSum=0.856;SOR=0.990;set=HC	GT:AD:AF:DP	0/1:14,21:0.60:35
chr19	5832209	rs778805	G	A	4219.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:135,194:0.59:329
chr19	5844537	rs778986	A	G	3717.77	.	AC=1;AF=0.500;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	0/1:237,190:0.44:427
chr19	5844649	rs812936	G	A	1535.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.905;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=4.059;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.44;ReadPosRankSum=-1.054;SOR=0.418;set=HC	GT:AD:AF:DP	0/1:104,78:0.43:182
chr19	5866585	rs778982	C	T	1131.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:40,51:0.56:91
chr19	5866654	rs778983	A	G	1034.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:49,54:0.52:103
chr19	5866736	rs57100281	T	C	234.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:29,14:0.33:43
chr19	5866840	rs702065	T	C	84.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.795;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=40.89;MQRankSum=-0.453;QD=7.06;ReadPosRankSum=-1.701;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:8,4:0.33:12
chr19	5867154	rs140776824	G	A	980.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:50,45:0.47:95
chr19	5867177	rs778970	G	A	1107.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:46,48:0.51:94
chr19	5892317	rs1626918	C	T	339.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:6,15:0.71:21
chr19	5892382	rs1678867	C	T	643.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:29,30:0.51:59
chr19	5892797	rs72989069	T	C	741.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:55,40:0.42:95
chr19	5893058	rs12980262	G	A	2231.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:87,105:0.55:192
chr19	5894584	rs12974991	G	A	251.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:10,11:0.52:21
chr19	5894645	rs12975210	G	C	1101.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:34,53:0.61:87
chr19	5896766	rs702064	C	T	316.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:18,14:0.44:32
chr19	5903807	rs8108064	G	T	2722.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:76,124:0.62:200
chr19	5905141	rs10406399	G	A	251.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:11,13:0.54:24
chr19	5913826	rs274784	C	T	456.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:32,19:0.37:51
chr19	5915151	rs74174355	C	T	2862.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:108,128:0.54:236
chr19	5921352	rs274795	G	A	2195.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:96,106:0.52:202
chr19	5927857	rs55879542	C	G	738.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:22,30:0.58:52
chr19	5928185	rs274793	T	C	510.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:19,25:0.57:44
chr19	5962553	rs35941975	G	A	260.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:6,10:0.62:16
chr19	5994823	rs71942694	CGAG	C	1535.73	.	AC=1;AF=0.500;AN=2;DB;DP=116;MQ=60.09;set=Intersection	GT:AD:AF:DP	0/1:72,43:0.37:115
chr19	5995450	rs452767	T	C	1088.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:33,45:0.58:78
chr19	5995582	rs2302222	T	C	3114.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:101,145:0.59:246
chr19	6002917	rs28421560	A	G	661.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:61,35:0.36:96
chr19	6026288	.	G	GA	87.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.853;ClippingRankSum=0.000;DP=209;ExcessHet=3.0103;FS=3.033;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=0.000;QD=0.52;ReadPosRankSum=-1.504;SOR=1.121;set=HC	GT:AD:AF:DP	0/1:139,30:0.18:169
chr19	6042059	rs2288846	C	T	1957.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:86,96:0.53:182
chr19	6156510	rs33937754	A	G	12635.77	.	AC=2;AF=1.00;AN=2;DB;DP=473;set=Intersection	GT:AD:AF:DP	1/1:0,465:1.00:465
chr19	6161110	.	C	CA	148.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.403;ClippingRankSum=0.000;DP=75;ExcessHet=3.0103;FS=2.945;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.12;ReadPosRankSum=-2.065;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:49,21:0.30:70
chr19	6214134	.	C	G	71.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.168;ClippingRankSum=0.000;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.22;ReadPosRankSum=-0.458;SOR=0.193;set=HC	GT:AD:AF:DP	0/1:12,5:0.29:17
chr19	6230771	rs2233185	T	G	3830.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:4,144:0.97:148
chr19	6262355	rs2227261	C	T	9659.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	1/1:4,375:0.99:379
chr19	6306971	rs4807863	G	A	1979.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr19	6333290	rs2335192	T	C	829.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:66,41:0.38:107
chr19	6361845	rs57445020	G	GC	7571.73	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr19	6364742	.	G	GT	144.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.073;ClippingRankSum=0.000;DP=186;ExcessHet=3.0103;FS=6.863;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.25;ReadPosRankSum=-1.460;SOR=0.242;set=HC	GT:AD:AF:DP	0/1:91,25:0.22:116
chr19	6375656	.	G	T	2167.77	.	AC=1;AF=0.500;AN=2;DP=354;set=Intersection	GT:AD:AF:DP	0/1:219,117:0.35:336
chr19	6411830	rs113579663	C	G	6282.77	.	AC=1;AF=0.500;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	0/1:124,270:0.69:394
chr19	6415443	rs1616305	T	C	17904.77	.	AC=2;AF=1.00;AN=2;DB;DP=685;set=Intersection	GT:AD:AF:DP	1/1:0,680:1.00:680
chr19	6415795	rs8103311	T	C	389.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:86,25:0.23:111
chr19	6417855	rs2258496	G	A	3431.77	.	AC=1;AF=0.500;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	0/1:251,169:0.40:420
chr19	6419275	rs2305059	A	G	1528.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:154,83:0.35:237
chr19	6427408	rs3760750	G	A	4286.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:145,193:0.57:338
chr19	6432329	.	A	AT	99.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.215;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=5.360;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.92;ReadPosRankSum=1.517;SOR=0.116;set=HC	GT:AD:AF:DP	0/1:38,14:0.27:52
chr19	6436304	rs2860182	TC	CT	618.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;JOINED;set=Intersection	GT:AD:AF:DP	0/1:32,18:0.36:50
chr19	6443472	rs145180922	CA	C	505.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:9,18:0.67:27
chr19	6443675	rs348341	G	A	2127.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:63,100:0.61:163
chr19	6452305	rs173229	A	G	3578.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:70,148:0.68:218
chr19	6456218	rs348367	C	T	2877.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:1,100:0.99:101
chr19	6457367	rs348370	T	C	1935.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr19	6466482	rs348362	A	G	7264.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr19	6468331	rs62107586	T	C	9895.77	.	AC=2;AF=1.00;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	1/1:0,366:1.00:366
chr19	6469042	rs150679157	CT	C	3290.73	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:6,166:0.97:172
chr19	6469053	rs55698874	T	G	7461.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;MQ=60.06;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr19	6471170	rs11882213	C	T	2094.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr19	6471567	rs8105247	G	A	1555.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr19	6475163	rs12976944	A	C	7337.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr19	6475613	rs3745571	T	C	15144.77	.	AC=2;AF=1.00;AN=2;DB;DP=575;set=Intersection	GT:AD:AF:DP	1/1:2,560:1.00:562
chr19	6477256	rs348398	G	T	5361.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:1,194:0.99:195
chr19	6477324	rs348399	G	C	7028.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr19	6477617	.	T	TTAATAATAATAA	273.79	.	AC=2;AF=1.00;AN=2;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.11;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr19	6495064	rs446199	C	G	725.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr19	6501386	rs150812047	C	T	4960.77	.	AC=1;AF=0.500;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	0/1:148,221:0.60:369
chr19	6501998	rs11672092	C	T	1307.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:19,56:0.75:75
chr19	6535080	rs2234182	T	C	1758.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:121,83:0.41:204
chr19	6583564	rs72193958	CTTTTTTTTTTTT	C	434.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.066;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=8.098;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.90;ReadPosRankSum=2.251;SOR=2.712;set=HC	GT:AD:AF:DP	0/1:11,12:0.52:23
chr19	6585921	rs453462	G	C	486.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr19	6586268	rs1862511	G	A	1035.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:102,59:0.37:161
chr19	6589960	rs11361927	CT	C	380.73	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:19,15:0.44:34
chr19	6665020	rs344560	T	C	21939.77	.	AC=2;AF=1.00;AN=2;DB;DP=809;set=Intersection	GT:AD:AF:DP	1/1:0,799:1.00:799
chr19	6666908	rs147441311	AAAATAAAT	A	308.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:14,10:0.42:24
chr19	6677989	rs17030	G	A	4761.77	.	AC=1;AF=0.500;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	0/1:141,214:0.60:355
chr19	6679360	rs344555	T	C	2922.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:70,126:0.64:196
chr19	6679511	rs2277984	C	T	5710.77	.	AC=1;AF=0.500;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	0/1:183,267:0.59:450
chr19	6679563	rs2277983	T	C	3785.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:122,182:0.60:304
chr19	6685230	rs2241394	G	C	1087.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:37,52:0.58:89
chr19	6685304	rs2241393	G	C	985.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr19	6689298	.	A	ACCCCACAGTCCCCCAC	4458.73	.	AC=1;AF=0.500;AN=2;DP=275;set=Intersection	GT:AD:AF:DP	0/1:89,115:0.56:204
chr19	6689331	.	T	TAC	2891	.	AC=1;AF=0.500;AN=2;BRF=0.47;FR=0.5000;HP=2;HapScore=2;MGOF=119;MMLQ=28;MQ=56.5;NF=0;NR=100;PP=2891;QD=20;SC=TCTCTCTCTCTCTACCTACCT;SbPval=1.0;Source=Platypus;TC=128;TCF=2;TCR=126;TR=100;WE=6689358;WS=6689321;set=Platypus	GT:AD:AF:DP	1/0:28,100:0.78:128
chr19	6689333	.	TACCTAC	TCTAC,T	1667.73	.	AC=1,0;AF=0.500,0.00;AN=2;DP=130;set=Intersection	GT:AF:DP	0/1:0.50:108
chr19	6689346	rs141412883	C	A	98.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.005;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.75;MQRankSum=-2.002;QD=3.66;ReadPosRankSum=2.154;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:22,5:0.19:27
chr19	6689367	.	C	T	63.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.768;ClippingRankSum=0.000;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.53;MQRankSum=0.559;QD=2.66;ReadPosRankSum=0.272;SOR=0.055;set=HC	GT:AD:AF:DP	0/1:20,4:0.17:24
chr19	6689371	rs13345176	C	T	444.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.587;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.50;MQRankSum=-0.496;QD=24.71;ReadPosRankSum=1.525;SOR=1.863;set=HC	GT:AD:AF:DP	0/1:5,13:0.72:18
chr19	6690460	rs11569513	C	G	586.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:7,22:0.76:29
chr19	6690461	rs6417195	G	A	112.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:22,7:0.24:29
chr19	6690571	rs11569511	C	T	1959.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:46,83:0.64:129
chr19	6690742	rs11569510	A	G	3180.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.859;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=1.135;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.74;ReadPosRankSum=-1.240;SOR=0.792;set=HC	GT:AD:AF:DP	0/1:105,85:0.45:190
chr19	6690744	rs11569509	A	G	3180.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.316;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=1.135;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.83;ReadPosRankSum=0.053;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:106,83:0.44:189
chr19	6690746	rs11569508	A	G	3137.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.063;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=0.540;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.78;ReadPosRankSum=0.341;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:106,81:0.43:187
chr19	6690771	rs3745567	C	T	1359.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:87,68:0.44:155
chr19	6690805	rs11569507	T	C	767.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:59,37:0.39:96
chr19	6693317	rs2241389	G	A	551.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:15,24:0.62:39
chr19	6693387	rs389404	G	A	1378.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:41,65:0.61:106
chr19	6693571	rs11085194	C	T	504.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.337;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.97;ReadPosRankSum=0.751;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:88,39:0.31:127
chr19	6693636	rs400443	A	G	497.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:15,20:0.57:35
chr19	6696342	rs2287848	A	G	239.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:24,13:0.35:37
chr19	6696496	rs2287847	T	C	12081.77	.	AC=2;AF=1.00;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	1/1:0,448:1.00:448
chr19	6696557	rs2287846	C	G	3787.77	.	AC=1;AF=0.500;AN=2;DB;DP=495;set=Intersection	GT:AD:AF:DP	0/1:291,203:0.41:494
chr19	6696597	rs2287845	G	A	3326.77	.	AC=1;AF=0.500;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	0/1:206,176:0.46:382
chr19	6696691	rs2355315	G	T	2078.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.007;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=1.318;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.37;ReadPosRankSum=-1.160;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:105,63:0.38:168
chr19	6696699	rs2253756	G	A	1936.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.403;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=0.665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.83;ReadPosRankSum=1.094;SOR=0.595;set=HC	GT:AD:AF:DP	0/1:98,53:0.35:151
chr19	6696789	rs2355316	G	A	170.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:32,11:0.26:43
chr19	6696794	rs11569479	T	C	600.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:11,28:0.72:39
chr19	6697214	rs5826946	AT	A	93.73	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:27,8:0.23:35
chr19	6697406	rs423490	A	G	14383.77	.	AC=2;AF=1.00;AN=2;DB;DP=564;set=Intersection	GT:AD:AF:DP	1/1:0,556:1.00:556
chr19	6697829	rs366510	G	T	453.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:45,23:0.34:68
chr19	6702042	rs433594	A	G	102.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:9,5:0.36:14
chr19	6702157	rs428453	C	G	258.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:41,16:0.28:57
chr19	6702246	rs432823	T	C	364.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.195;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.912;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.39;ReadPosRankSum=0.299;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:59,24:0.29:83
chr19	6702598	rs406514	G	A	9774.77	.	AC=2;AF=1.00;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	1/1:0,359:1.00:359
chr19	6708107	rs10659507	T	TTCTC	1433.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.173;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=-1.330;QD=13.28;ReadPosRankSum=0.530;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:68,40:0.37:108
chr19	6708127	rs141560150	TTTTC	T	1779.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.765;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=5.004;MLEAC=1;MLEAF=0.500;MQ=60.38;MQRankSum=1.287;QD=25.42;ReadPosRankSum=0.905;SOR=1.733;set=HC	GT:AD:AF:DP	0/1:24,46:0.66:70
chr19	6709848	rs2230204	C	T	3629.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:79,160:0.67:239
chr19	6710572	rs189367	G	A	1252.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.83;SOR=5.235;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr19	6710584	rs112132860	GGA	G	1084.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.435;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=2.653;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.47;ReadPosRankSum=0.060;SOR=0.173;set=HC	GT:AD:AF:DP	0/1:18,35:0.66:53
chr19	6713419	.	G	A	7258.77	.	AC=1;AF=0.500;AN=2;DP=491;set=Intersection	GT:AD:AF:DP	0/1:165,316:0.66:481
chr19	6718534	rs2250656	T	C	786.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:36,31:0.46:67
chr19	6731057	rs2279624	T	C	2026.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.152;ClippingRankSum=0.000;DB;DP=285;ExcessHet=3.0103;FS=2.038;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.21;ReadPosRankSum=-2.083;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:170,111:0.40:281
chr19	6731304	rs2279626	G	A	1315.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:110,71:0.39:181
chr19	6731766	rs1702375	C	A	449.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:45,23:0.34:68
chr19	6732018	rs2291666	C	T	4055.73	.	AC=1;AF=0.500;AN=2;DB;DP=552;set=Intersection	GT:AD:AF:DP	0/1:332,206:0.38:538
chr19	6732241	rs344618	C	T	7377.77	.	AC=1;AF=0.500;AN=2;DB;DP=442;set=Intersection	GT:AD:AF:DP	0/1:129,303:0.70:432
chr19	6732476	rs117899024	G	T	2044.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:199,108:0.35:307
chr19	6732615	rs2047139	T	C	2934.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr19	6732982	rs2012357	G	A	1375.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr19	6733517	rs339395	A	G	1124.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:163,70:0.30:233
chr19	6734131	rs339397	C	G	4148.77	.	AC=1;AF=0.500;AN=2;DB;DP=569;set=Intersection	GT:AD:AF:DP	0/1:353,211:0.37:564
chr19	6737481	rs340138	T	C	16671.77	.	AC=2;AF=1.00;AN=2;DB;DP=623;set=Intersection	GT:AD:AF:DP	1/1:0,619:1.00:619
chr19	6737509	rs339401	G	A	21924.77	.	AC=2;AF=1.00;AN=2;DB;DP=691;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.19;SOR=0.795;set=HC	GT:AD:AF:DP	1/1:0,681:1.00:681
chr19	6737509	.	GCAGCAGC	ACAGCAGC,ACAGCAGT	2962	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.52;FR=0.5000,0.5000;HP=1;HapScore=1;MGOF=17;MMLQ=26;MQ=60.0;NF=234,62;NR=198,57;PP=2962,1553;QD=20;SC=CAGCCACCCAGCAGCAGCACC;SbPval=0.54;Source=Platypus;TC=433;TCF=235;TCR=198;TR=432,119;WE=6737524;WS=6737499;set=Platypus	GT:AF:DP	0/1:1.00:433
chr19	6737516	rs11539591	C	T	3718.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.483;ClippingRankSum=0.000;DB;DP=711;ExcessHet=3.0103;FS=1.882;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.31;ReadPosRankSum=1.196;SOR=0.566;set=HC	GT:AD:AF:DP	0/1:479,221:0.32:700
chr19	6737644	rs3745556	G	A	5635.77	.	AC=1;AF=0.500;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	0/1:108,246:0.69:354
chr19	6739710	rs2303109	G	T	560.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.706;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=13.769;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.01;ReadPosRankSum=-0.666;SOR=0.057;set=HC	GT:AD:AF:DP	0/1:27,29:0.52:56
chr19	6743399	rs381897	A	T	323.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:46,18:0.28:64
chr19	6743634	rs339407	G	C	2608.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.329;ClippingRankSum=0.000;DB;DP=223;ExcessHet=3.0103;FS=23.873;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.11;ReadPosRankSum=1.336;SOR=3.053;set=HC	GT:AD:AF:DP	0/1:67,132:0.66:199
chr19	6744762	rs339405	A	C	13834.77	.	AC=2;AF=1.00;AN=2;DB;DP=494;set=Intersection	GT:AD:AF:DP	1/1:0,487:1.00:487
chr19	6754774	rs168129	C	A	10828.77	.	AC=2;AF=1.00;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	1/1:0,388:1.00:388
chr19	6820852	.	A	C	3741.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.228;ClippingRankSum=0.000;DP=163;ExcessHet=3.0103;FS=0.602;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.39;ReadPosRankSum=1.624;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:63,97:0.61:160
chr19	6820856	.	A	T	3610.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.819;ClippingRankSum=0.000;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.40;ReadPosRankSum=1.297;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:57,91:0.61:148
chr19	6825032	rs12979659	T	C	940.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:70,47:0.40:117
chr19	6828040	rs164022	G	C	1731.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:175,94:0.35:269
chr19	6832060	rs625828	T	A	753.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:67,40:0.37:107
chr19	6833072	rs308200	C	T	399.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr19	6833160	rs374143798	T	G	887.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.292;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.65;MQRankSum=0.000;QD=16.14;ReadPosRankSum=-0.082;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:17,38:0.69:55
chr19	6833162	rs78698684	CT	C	324.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.042;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.67;MQRankSum=0.000;QD=5.70;ReadPosRankSum=0.994;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:23,34:0.60:57
chr19	6833777	rs186295	A	G	3023.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr19	6833989	rs308199	G	T	1898.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr19	6836271	rs308196	A	C	996.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr19	6836836	rs308194	G	A	2467.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr19	6836844	.	GACACACACACACACACACACACAC	G,GAC	2410.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=72;set=Intersection	GT:AF:DP	1/2:0.26,0.74:61
chr19	6890432	.	G	GT	65.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.643;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.50;MQRankSum=1.575;QD=2.12;ReadPosRankSum=-0.641;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:19,12:0.39:31
chr19	6908675	rs34044572	C	CT,CTT	1749.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.834;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.12;MQRankSum=0.766;QD=11.07;ReadPosRankSum=1.618;SOR=0.762;set=HC	GT:AD:AF:DP	1/2:38,73,47:0.46,0.30:158
chr19	6913811	rs457857	A	G	4409.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr19	6913878	rs462913	G	T	1697.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr19	6919529	rs171674	T	C	641.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr19	6919624	rs373533	A	C	3232.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr19	6919753	rs461645	A	G	2550.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr19	6919879	rs252566	C	T	528.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr19	6935113	rs252551	C	T	8530.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:2,320:0.99:322
chr19	6935121	rs1160969	T	TAA	11860.73	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr19	6937683	rs388711	A	G	6986.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr19	6939910	rs463891	G	A	1654.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr19	6940189	rs464849	G	C	1156.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr19	6954725	rs11085209	G	A	7817.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr19	6960834	rs459883	A	C	1739.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr19	6961182	rs460698	G	A	2203.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr19	6974564	rs466123	C	T	7223.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr19	6977211	rs4807919	A	G	8710.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr19	6977409	rs7255801	C	T	8049.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr19	6980939	rs2035972	T	C	1350.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr19	6981582	rs2035971	A	T	3499.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr19	6981849	rs1874003	T	C	6010.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr19	6981885	rs1874002	T	C	3049.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr19	6984708	rs7247453	G	A	6704.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr19	6984927	rs34752448	T	C	845.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr19	6988662	rs8107779	T	C	1208.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr19	6988791	rs8103492	G	C	5571.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr19	6988914	rs1466715	A	G	1903.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr19	6990702	rs12972391	A	G	577.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:51,30:0.37:81
chr19	6991010	rs8108538	C	T	1301.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr19	6994972	rs10416745	G	A	2938.77	.	AC=1;AF=0.500;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	0/1:255,153:0.38:408
chr19	7005818	rs10414331	T	C	384.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:10,19:0.66:29
chr19	7005905	rs62126094	T	A	879.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.72;QD=28.38;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr19	7005935	rs73492763	G	C	460.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=6.262;MLEAC=1;MLEAF=0.500;MQ=42.47;MQRankSum=-0.418;QD=17.07;ReadPosRankSum=0.000;SOR=0.946;set=HC	GT:AD:AF:DP	0/1:9,18:0.67:27
chr19	7011717	rs7254172	T	C	134.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:3,6:0.67:9
chr19	7011766	rs6510942	T	C	470.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr19	7011826	rs7254322	T	C	319.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:14,14:0.50:28
chr19	7011858	rs114601404	C	G	481.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.338;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=5.480;MLEAC=1;MLEAF=0.500;MQ=57.78;MQRankSum=-1.422;QD=15.06;ReadPosRankSum=-2.016;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:18,14:0.44:32
chr19	7011858	.	CAG	GAC	448	.	AC=1;AF=0.500;AN=2;BRF=0.53;FR=0.5000;HP=1;HapScore=2;MGOF=38;MMLQ=24;MQ=44.18;NF=7;NR=6;PP=448;QD=38.5744519125;SC=GCCTTGGGACCAGTTCTGCCT;SbPval=0.3;Source=Platypus;TC=26;TCF=17;TCR=9;TR=13;WE=7011868;WS=7011848;set=Platypus	GT:AD:AF:DP	0/1:13,13:0.50:26
chr19	7011860	rs7249689	G	C	481.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.472;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=5.523;MLEAC=1;MLEAF=0.500;MQ=57.24;MQRankSum=-1.088;QD=15.06;ReadPosRankSum=-1.749;SOR=0.966;set=HC	GT:AD:AF:DP	0/1:19,13:0.41:32
chr19	7011876	rs113730497	GT	G	361.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.511;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=5.488;MLEAC=1;MLEAF=0.500;MQ=55.60;MQRankSum=-0.338;QD=11.30;ReadPosRankSum=-1.984;SOR=0.498;set=HC	GT:AD:AF:DP	0/1:21,11:0.34:32
chr19	7011878	.	C	A	370.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.092;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=5.488;MLEAC=1;MLEAF=0.500;MQ=55.60;MQRankSum=-0.338;QD=11.59;ReadPosRankSum=-1.945;SOR=0.498;set=HC	GT:AD:AF:DP	0/1:21,11:0.34:32
chr19	7012011	rs146597344	C	G	113.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.640;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=1.693;MLEAC=1;MLEAF=0.500;MQ=53.13;MQRankSum=-4.184;QD=3.25;ReadPosRankSum=0.561;SOR=0.764;set=HC	GT:AD:AF:DP	0/1:28,7:0.20:35
chr19	7012026	rs8108169	A	G	186.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.298;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=3.030;MLEAC=1;MLEAF=0.500;MQ=53.07;MQRankSum=-5.304;QD=4.67;ReadPosRankSum=-0.898;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:29,11:0.28:40
chr19	7012162	rs66626943	C	A	135.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:6,7:0.54:13
chr19	7012180	rs59667403	G	A	68.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:3,4:0.57:7
chr19	7074872	rs2967648	G	A	237.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:33,13:0.28:46
chr19	7116963	rs1051690	T	C	1090.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr19	7122511	rs34073323	AT	A	1808.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr19	7125519	rs1799815	G	A	7059.77	.	AC=1;AF=0.500;AN=2;DB;DP=567;set=Intersection	GT:AD:AF:DP	0/1:234,326:0.58:560
chr19	7131996	.	C	CA	70.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.555;ClippingRankSum=0.000;DP=23;ExcessHet=3.0103;FS=7.225;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.08;ReadPosRankSum=0.438;SOR=0.048;set=HC	GT:AD:AF:DP	0/1:14,9:0.39:23
chr19	7150418	rs2252673	C	G	1124.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr19	7293898	rs7508518	G	C	424.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr19	7427607	rs11260007	T	C	4922.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr19	7504767	rs10401415	G	T	626.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:19,29:0.60:48
chr19	7504982	rs10422503	C	T	3475.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:88,148:0.63:236
chr19	7506667	rs2287908	CT	TG	4824.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;JOINED;set=Intersection	GT:AD:AF:DP	0/1:70,122:0.64:192
chr19	7506755	rs2287910	A	G	1322.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:40,56:0.58:96
chr19	7506982	rs10424311	C	G	869.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:17,38:0.69:55
chr19	7507010	rs200202576	CCCTTCCTTCCTTCCTTCCTTCCTTCCTT	C,CCCTTCCTTCCTT	821.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=61.49;QD=39.13;SOR=4.712;set=HC	GT:AD:AF:DP	1/2:0,16,5:0.76,0.24:21
chr19	7509436	rs12983399	G	A	669.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:50,35:0.41:85
chr19	7509492	rs12983450	G	A	185.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:16,10:0.38:26
chr19	7512065	rs59050162	T	A	358.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:47,22:0.32:69
chr19	7518268	rs11463454	T	TC	2023.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr19	7524727	rs34322626	G	A	2110.77	.	AC=1;AF=0.500;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	0/1:266,131:0.33:397
chr19	7524743	rs11259996	G	C	6266.77	.	AC=1;AF=0.500;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	0/1:139,281:0.67:420
chr19	7524846	rs2287914	C	T	3588.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;ClippingRankSum=0.000;DB;DP=272;ExcessHet=3.0103;FS=2.125;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.44;ReadPosRankSum=0.677;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:165,102:0.38:267
chr19	7524855	rs2287915	C	T	3377.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.157;ClippingRankSum=0.000;DB;DP=244;ExcessHet=3.0103;FS=2.291;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.02;ReadPosRankSum=1.605;SOR=0.541;set=HC	GT:AD:AF:DP	0/1:151,90:0.37:241
chr19	7528734	rs2287918	A	G	5322.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr19	7529415	rs2287919	C	T	1240.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:158,73:0.32:231
chr19	7531722	rs112677825	A	AAAGGAAGAAG	1077.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.736;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=10.940;MLEAC=1;MLEAF=0.500;MQ=59.76;MQRankSum=-2.349;QD=11.00;ReadPosRankSum=-1.740;SOR=2.077;set=HC	GT:AD:AF:DP	0/1:72,26:0.27:98
chr19	7532252	rs2303142	G	C	832.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.061;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=1.473;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.21;ReadPosRankSum=0.075;SOR=0.525;set=HC	GT:AD:AF:DP	0/1:85,49:0.37:134
chr19	7533767	rs10405143	T	G	6322.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr19	7533850	rs9329368	A	G	6930.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr19	7534075	rs2241396	C	T	330.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:14,15:0.52:29
chr19	7535249	rs12972299	C	A	502.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:32,24:0.43:56
chr19	7538039	rs11880122	A	G	6129.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:1,221:1.00:222
chr19	7538117	rs11880140	A	G	3120.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:89,144:0.62:233
chr19	7542118	rs7256275	G	A	716.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.158;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=1.517;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.51;ReadPosRankSum=-1.716;SOR=0.540;set=HC	GT:AD:AF:DP	0/1:87,43:0.33:130
chr19	7543080	rs7251754	T	A	225.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:21,12:0.36:33
chr19	7543113	rs7251857	T	C	377.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:28,20:0.42:48
chr19	7547074	rs2303146	A	C	1618.77	.	AC=1;AF=0.500;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	0/1:236,96:0.29:332
chr19	7550844	rs34970001	G	A	1149.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:95,59:0.38:154
chr19	7568966	rs113706007	A	ATCTCTCTC	1946.73	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:25,49:0.66:74
chr19	7570729	rs683729	G	A	1346.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:30,54:0.64:84
chr19	7570978	rs685034	T	C	7518.77	.	AC=1;AF=0.500;AN=2;DB;DP=491;set=Intersection	GT:AD:AF:DP	0/1:157,329:0.68:486
chr19	7571094	rs3826735	G	T	1195.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:34,64:0.65:98
chr19	7571315	rs10407177	C	A	293.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:14,15:0.52:29
chr19	7584223	rs11555037	A	G	14878.77	.	AC=1;AF=0.500;AN=2;DB;DP=1059;set=Intersection	GT:AD:AF:DP	0/1:387,664:0.63:1051
chr19	7593169	rs2305889	A	G	1427.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:127,77:0.38:204
chr19	7593589	rs612862	C	T	3008.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:100,140:0.58:240
chr19	7594159	rs625910	G	A	4112.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:93,186:0.67:279
chr19	7595121	rs11880842	C	T	1156.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:35,46:0.57:81
chr19	7606737	rs492092	G	C	1825.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:35,72:0.67:107
chr19	7606908	rs17854645	G	C	3004.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:69,132:0.66:201
chr19	7607441	rs574930	C	T	2482.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:78,115:0.60:193
chr19	7607564	rs620744	T	C	2984.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:79,132:0.63:211
chr19	7614888	rs62111288	C	G	6380.77	.	AC=1;AF=0.500;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	0/1:172,300:0.64:472
chr19	7615585	rs577219	T	G	519.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:12,19:0.61:31
chr19	7615903	rs8107538	G	A	5791.77	.	AC=1;AF=0.500;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	0/1:135,265:0.66:400
chr19	7619199	rs534464	C	G	2888.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:108,127:0.54:235
chr19	7619239	rs597582	T	C	2276.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:102,106:0.51:208
chr19	7619329	rs598023	G	A	3680.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.140;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.31;ReadPosRankSum=1.768;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:39,91:0.70:130
chr19	7619338	rs598028	G	C	3791.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.265;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=0.707;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.30;ReadPosRankSum=0.954;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:39,95:0.71:134
chr19	7619647	rs599328	GT	CC	2147.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;JOINED;set=Intersection	GT:AD:AF:DP	0/1:45,56:0.55:101
chr19	7619700	rs524530	G	A	1022.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:35,44:0.56:79
chr19	7619760	rs539887	A	C	1777.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:41,83:0.67:124
chr19	7620116	rs563826	A	G	8528.77	.	AC=1;AF=0.500;AN=2;DB;DP=610;set=Intersection	GT:AD:AF:DP	0/1:219,380:0.63:599
chr19	7621475	rs45505598	T	G	5736.77	.	AC=1;AF=0.500;AN=2;DB;DP=467;set=Intersection	GT:AD:AF:DP	0/1:190,270:0.59:460
chr19	7621648	rs489056	C	T	1610.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:27,69:0.72:96
chr19	7621981	rs2446176	A	G	1238.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:41,57:0.58:98
chr19	7622226	rs1645800	G	A	8455.77	.	AC=1;AF=0.500;AN=2;DB;DP=721;set=Intersection	GT:AD:AF:DP	0/1:292,400:0.58:692
chr19	7623700	rs535208	G	A	1053.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:12,39:0.76:51
chr19	7625723	rs62111318	C	T	3989.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:113,183:0.62:296
chr19	7625864	rs35902090	G	GC	2478.73	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:200,116:0.37:316
chr19	7626013	rs11307097	AC	A	13328.73	.	AC=2;AF=1.00;AN=2;DB;DP=442;set=Intersection	GT:AD:AF:DP	1/1:0,425:1.00:425
chr19	7626071	rs62111319	T	C	4014.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:118,184:0.61:302
chr19	7626275	rs45474094	C	G	1677.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:33,72:0.69:105
chr19	7626669	rs2303178	G	A	9108.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:0,335:1.00:335
chr19	7670033	rs56244737	G	GGT,GGTGTGTGTGTGTGT,GGTGTGTGTGTGT	3418.73	.	AC=1,1,0;AF=0.500,0.500,0.00;AN=2;DB;DP=255;set=Intersection	GT:AF:DP	1/2:0.51,0.27:215
chr19	7675369	rs62113420	C	T	5930.77	.	AC=1;AF=0.500;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	0/1:101,269:0.73:370
chr19	7680003	rs62113426	G	C	771.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:17,36:0.68:53
chr19	7685981	rs4134863	G	A	966.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:30,45:0.60:75
chr19	7686282	rs4134861	A	T	1830.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:36,74:0.67:110
chr19	7687626	rs4134851	C	G	8424.77	.	AC=1;AF=0.500;AN=2;DB;DP=618;set=Intersection	GT:AD:AF:DP	0/1:234,377:0.62:611
chr19	7687908	rs4134849	A	G	1427.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:32,59:0.65:91
chr19	7688039	rs4134846	C	T	4783.77	.	AC=1;AF=0.500;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	0/1:131,220:0.63:351
chr19	7688614	rs2335521	T	C	1816.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:48,82:0.63:130
chr19	7688838	rs732457	A	G	554.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:6,22:0.79:28
chr19	7691001	rs4134838	G	C	5153.77	.	AC=1;AF=0.500;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	0/1:141,225:0.61:366
chr19	7692058	rs794084	G	A	1167.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:43,53:0.55:96
chr19	7692076	rs4134826	T	C	2255.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.991;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=0.732;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.08;ReadPosRankSum=0.373;SOR=0.843;set=HC	GT:AD:AF:DP	0/1:49,58:0.54:107
chr19	7692083	rs4134825	G	A	2297.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.193;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=0.704;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.16;ReadPosRankSum=0.353;SOR=0.795;set=HC	GT:AD:AF:DP	0/1:53,61:0.54:114
chr19	7694393	rs4134809	G	A	9874.77	.	AC=1;AF=0.500;AN=2;DB;DP=780;set=Intersection	GT:AD:AF:DP	0/1:330,445:0.57:775
chr19	7695620	rs11260004	T	C	3525.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:90,161:0.64:251
chr19	7696294	rs376677773	GT	G	65.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.481;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=2.674;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.27;ReadPosRankSum=0.049;SOR=1.524;set=HC	GT:AD:AF:DP	0/1:21,8:0.28:29
chr19	7697168	rs2279042	C	T	1230.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:30,54:0.64:84
chr19	7697779	rs56272042	T	C	6474.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.602;ClippingRankSum=0.000;DB;DP=291;ExcessHet=3.0103;FS=3.964;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.40;ReadPosRankSum=-0.502;SOR=0.917;set=HC	GT:AD:AF:DP	0/1:119,170:0.59:289
chr19	7697787	rs56262542	T	C	6226.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.121;ClippingRankSum=0.000;DB;DP=271;ExcessHet=3.0103;FS=4.963;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.06;ReadPosRankSum=0.793;SOR=1.002;set=HC	GT:AD:AF:DP	0/1:114,156:0.58:270
chr19	7697885	rs78473084	TGA	T	1071.73	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:22,28:0.56:50
chr19	7698226	rs151032321	C	CTAAT	3541.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.484;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=7.445;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.843;QD=23.30;ReadPosRankSum=0.580;SOR=0.339;set=HC	GT:AD:AF:DP	0/1:62,90:0.59:152
chr19	7698320	rs1862514	C	T	2529.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:85,118:0.58:203
chr19	7703490	rs144737616	TA	T	153.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.123;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=1.174;QD=4.05;ReadPosRankSum=-0.497;SOR=0.559;set=HC	GT:AD:AF:DP	0/1:20,18:0.47:38
chr19	7703605	rs8104339	C	T	2531.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.557;ClippingRankSum=0.000;DB;DP=240;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=-1.097;QD=11.06;ReadPosRankSum=1.056;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:103,126:0.55:229
chr19	7704815	rs138165596	TATGTGTGTGC	T	1444.73	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:17,38:0.69:55
chr19	7705383	rs76937271	CATCTGTGTGTGTGT	C	1316.73	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:34,38:0.53:72
chr19	7707319	.	G	A	4257.77	.	AC=1;AF=0.500;AN=2;DP=649;set=Intersection	GT:AD:AF:DP	0/1:410,230:0.36:640
chr19	7708214	rs2303115	G	A	558.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:7,22:0.76:29
chr19	7710040	rs929807	T	C	4389.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:114,200:0.64:314
chr19	7710210	rs889187	A	G	1798.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:48,79:0.62:127
chr19	7710269	rs710951	A	G	703.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:27,29:0.52:56
chr19	7711221	rs10001	T	C	1994.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:79,94:0.54:173
chr19	7712161	rs55954306	C	T	3263.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:77,157:0.67:234
chr19	7712277	rs6791	A	G	3660.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:81,166:0.67:247
chr19	7712425	rs34976997	G	C	1264.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:22,49:0.69:71
chr19	7712474	rs794074	G	A	1018.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:22,41:0.65:63
chr19	7712585	rs794073	T	G	3949.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:71,182:0.72:253
chr19	7734369	rs3219177	C	T	1172.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:143,62:0.30:205
chr19	7734511	rs3745367	G	A	390.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:40,21:0.34:61
chr19	7735011	rs12981326	C	G	63.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.723;ClippingRankSum=-0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.91;ReadPosRankSum=1.451;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:9,4:0.31:13
chr19	7735089	rs10402265	G	C	1824.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:48,80:0.62:128
chr19	7735286	.	AG	A	978	.	AC=1;AF=0.500;AN=2;BRF=0.45;FR=0.5000;HP=6;HapScore=1;MGOF=83;MMLQ=24;MQ=60.0;NF=2;NR=17;PP=978;QD=53.2631578947;SC=CCAGGTCCGGAGGGGTTGCGG;SbPval=0.39;Source=Platypus;TC=57;TCF=4;TCR=53;TR=19;WE=7735294;WS=7735276;set=Platypus	GT:AD:AF:DP	0/1:38,19:0.33:57
chr19	7735318	rs112669651	AGATGATGAT	A	1464.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=44.39;SOR=4.112;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr19	7742335	rs146580993	ATG	A	894.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.28;SOR=6.439;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr19	7743975	rs11882592	C	A	2116.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:54,99:0.65:153
chr19	7744075	rs369820452	ACC	AC,A	457.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=28;set=Intersection	GT:AF:DP	1/1:0.96:23
chr19	7761812	rs2277989	A	G	6816.77	.	AC=1;AF=0.500;AN=2;DB;DP=470;set=Intersection	GT:AD:AF:DP	0/1:150,307:0.67:457
chr19	7764157	rs12984870	A	G	843.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:80,45:0.36:125
chr19	7764363	rs61499635	GTTTTT	G,GT	6760.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=233;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.92;QD=35.96;SOR=1.623;set=HC	GT:AD:AF:DP	1/2:2,114,72:0.61,0.38:188
chr19	7764436	rs12980031	G	T	2228.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr19	7764473	rs62111766	C	A	481.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:40,21:0.34:61
chr19	7764545	rs3214456	G	GC	1417.73	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:48,65:0.58:113
chr19	7764741	rs2287867	G	A	1665.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:54,73:0.57:127
chr19	7764772	rs2287868	T	C	1250.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:32,55:0.63:87
chr19	7764810	rs11672993	G	A	380.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:32,18:0.36:50
chr19	7764865	rs11672997	G	A	100.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:11,6:0.35:17
chr19	7794605	rs2277997	T	C	7327.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr19	7795813	rs6603117	G	A	369.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr19	7796497	rs11260026	C	G	7246.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr19	7831166	rs868875	A	G	2112.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:58,90:0.61:148
chr19	7831226	rs868876	A	T	1134.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:14,43:0.75:57
chr19	7831429	rs475896	C	G	2012.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:49,86:0.64:135
chr19	7831628	rs2277998	G	A	8455.77	.	AC=1;AF=0.500;AN=2;DB;DP=613;set=Intersection	GT:AD:AF:DP	0/1:227,374:0.62:601
chr19	7831700	rs562607	G	C	7281.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr19	7832664	rs2161525	T	C	1183.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:68,52:0.43:120
chr19	7913752	rs3826742	C	T	1953.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:79,86:0.52:165
chr19	7913974	rs555609	T	C	8518.77	.	AC=1;AF=0.500;AN=2;DB;DP=651;set=Intersection	GT:AD:AF:DP	0/1:238,398:0.63:636
chr19	7916475	rs2452012	T	C	6976.73	.	AC=1;AF=0.500;AN=2;DB;DP=566;set=Intersection	GT:AD:AF:DP	0/1:221,331:0.60:552
chr19	7916620	rs580790	A	G	2606.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:89,120:0.57:209
chr19	7918103	rs526464	A	G	14983.77	.	AC=2;AF=1.00;AN=2;DB;DP=553;set=Intersection	GT:AD:AF:DP	1/1:0,547:1.00:547
chr19	7926937	rs3217320	GC	G	1034.73	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:75,44:0.37:119
chr19	7928462	rs10410459	T	C	8864.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,326:1.00:326
chr19	7938306	rs58971992	A	AG	4608.73	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr19	7944348	rs56796931	TC	T	7720.73	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr19	7944806	rs55746021	T	C	2804.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:80,134:0.63:214
chr19	7963914	rs524029	A	C	18075.77	.	AC=2;AF=1.00;AN=2;DB;DP=652;set=Intersection	GT:AD:AF:DP	1/1:0,647:1.00:647
chr19	7963949	rs2042919	A	G	3707.77	.	AC=1;AF=0.500;AN=2;DB;DP=506;set=Intersection	GT:AD:AF:DP	0/1:319,185:0.37:504
chr19	7963976	rs2115108	T	C	11509.77	.	AC=2;AF=1.00;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	1/1:0,422:1.00:422
chr19	7964727	rs3745382	G	A	2848.77	.	AC=1;AF=0.500;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	0/1:276,152:0.36:428
chr19	7965339	rs3745383	C	T	2688.77	.	AC=1;AF=0.500;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	0/1:272,147:0.35:419
chr19	7969486	rs3810211	C	T	645.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:57,33:0.37:90
chr19	7970635	rs4804833	A	G	7342.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr19	7970823	rs138545009	G	GC	1199.73	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:19,45:0.70:64
chr19	7975464	rs11879199	A	C	4211.77	.	AC=1;AF=0.500;AN=2;DB;DP=656;set=Intersection	GT:AD:AF:DP	0/1:419,223:0.35:642
chr19	7976112	rs7260355	G	A	3083.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:110,142:0.56:252
chr19	7976116	rs10412007	T	C	2374.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:151,114:0.43:265
chr19	7976529	rs2303700	T	C	1185.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr19	7986638	rs475002	C	G	7955.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr19	7990134	rs112578370	T	G	925.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.375;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.68;ReadPosRankSum=1.874;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:29,44:0.60:73
chr19	7995987	rs58157552	T	TA	584.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.740;ClippingRankSum=0.000;DB;DP=295;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.10;ReadPosRankSum=-2.028;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:209,70:0.25:279
chr19	8000052	rs34802817	C	CT	415.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.046;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=5.20;ReadPosRankSum=-1.540;SOR=0.843;set=HC	GT:AD:AF:DP	0/1:49,31:0.39:80
chr19	8122620	rs34168156	G	C	2221.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:38,93:0.71:131
chr19	8122737	rs2303164	G	A	9580.77	.	AC=2;AF=1.00;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	1/1:0,363:1.00:363
chr19	8122767	rs2303165	T	C	9618.77	.	AC=2;AF=1.00;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	1/1:0,351:1.00:351
chr19	8127075	rs34145389	C	G	1931.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr19	8136839	rs73005512	G	C	2251.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr19	8137102	rs7256904	G	T	6138.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr19	8137850	.	C	CGT	908.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.388;ClippingRankSum=0.000;DP=90;ExcessHet=3.0103;FS=1.124;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.45;ReadPosRankSum=0.629;SOR=0.503;set=HC	GT:AD:AF:DP	0/1:24,49:0.67:73
chr19	8150952	rs112911412	A	G	150.80	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.17;QD=21.54;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr19	8150989	.	G	GCAGGCAGTGGGGGGAACAGGCAGTGGGGGGGGACAGGCAGTGGGGGGAA	1251.73	.	AC=2;AF=1.00;AN=2;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.57;QD=208.62;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr19	8151261	rs11665747	C	T	3880.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr19	8152725	rs12460643	A	G	5100.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;MQ=59.97;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr19	8154760	rs35033566	T	C	937.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr19	8154990	rs35002391	C	T	7556.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr19	8156290	rs8104453	A	G	15196.77	.	AC=2;AF=1.00;AN=2;DB;DP=592;set=Intersection	GT:AD:AF:DP	1/1:0,579:1.00:579
chr19	8160517	rs10413994	A	G	1873.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr19	8162121	rs45624733	C	T	4216.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:1,154:0.99:155
chr19	8167830	rs12986396	A	G	2127.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr19	8168326	rs3865463	G	A	630.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr19	8168399	rs4289098	G	A	2163.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr19	8168545	rs33967815	C	T	3721.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr19	8171252	rs2126971	A	G	2059.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr19	8176458	rs12609936	A	G	6865.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.47;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,151:1.00:151
chr19	8176463	rs11260057	A	G	7037.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.44;SOR=1.777;set=HC	GT:AD:AF:DP	1/1:0,162:1.00:162
chr19	8181543	rs77275164	G	A	4190.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:100,203:0.67:303
chr19	8190679	rs12986194	A	G	594.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:12,40:0.77:52
chr19	8191238	rs10906993	C	T	10181.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.27;SOR=0.841;set=HC	GT:AD:AF:DP	1/1:0,230:1.00:230
chr19	8191248	rs10906994	A	G	10264.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.68;SOR=0.847;set=HC	GT:AD:AF:DP	1/1:0,235:1.00:235
chr19	8191323	rs7260558	T	C	5982.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr19	8191401	rs3813778	G	A	7707.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr19	8196444	rs4804271	C	T	6325.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr19	8196508	rs12974280	G	C	7645.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr19	8197865	rs11666450	C	T	4807.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr19	8200759	rs6603148	G	T	1823.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr19	8201051	rs8112525	T	C	29155.77	.	AC=2;AF=1.00;AN=2;DB;DP=1066;set=Intersection	GT:AD:AF:DP	1/1:0,1057:1.00:1057
chr19	8201250	rs74793033	C	G	2437.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:166,117:0.41:283
chr19	8202944	rs1531547	G	C	804.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr19	8206559	rs72993508	G	C	714.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.342;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=4.815;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.75;ReadPosRankSum=-1.129;SOR=1.508;set=HC	GT:AD:AF:DP	0/1:32,20:0.38:52
chr19	8206568	rs72993510	G	A	820.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.321;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=6.672;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.46;ReadPosRankSum=-1.246;SOR=1.735;set=HC	GT:AD:AF:DP	0/1:37,24:0.39:61
chr19	8206748	rs12162233	G	A	3786.77	.	AC=1;AF=0.500;AN=2;DB;DP=561;set=Intersection	GT:AD:AF:DP	0/1:345,204:0.37:549
chr19	8207070	rs12162237	G	A	2015.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:215,114:0.35:329
chr19	8209926	rs899208	T	C	256.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.029;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=8.113;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.59;ReadPosRankSum=0.814;SOR=0.117;set=HC	GT:AD:AF:DP	0/1:39,17:0.30:56
chr19	8210608	rs56025743	C	A	671.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:32,31:0.49:63
chr19	8212163	rs56243829	C	T	3112.77	.	AC=1;AF=0.500;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	0/1:267,161:0.38:428
chr19	8212263	rs11878432	G	A	5819.77	.	AC=1;AF=0.500;AN=2;DB;DP=439;set=Intersection	GT:AD:AF:DP	0/1:157,269:0.63:426
chr19	8315847	rs379983	A	G	2704.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr19	8319194	rs12976441	A	C	53.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:4,3:0.43:7
chr19	8319206	.	C	CAAAA	168.87	.	AC=2;AF=1.00;AN=2;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.22;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr19	8321937	rs1127912	C	T	1028.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:86,54:0.39:140
chr19	8321946	rs36247	T	C	1518.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:51,73:0.59:124
chr19	8322594	rs36250	G	A	496.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:44,25:0.36:69
chr19	8326866	rs17160348	C	T	1864.77	.	AC=1;AF=0.500;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	0/1:244,110:0.31:354
chr19	8326904	rs36259	G	A	5743.77	.	AC=1;AF=0.500;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	0/1:105,259:0.71:364
chr19	8326944	rs17160349	G	A	1586.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.258;ClippingRankSum=0.000;DB;DP=313;ExcessHet=3.0103;FS=0.452;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.10;ReadPosRankSum=-0.701;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:218,93:0.30:311
chr19	8326999	rs1044547	C	T	848.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:126,52:0.29:178
chr19	8367033	rs250510	T	C	945.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr19	8367525	rs2227288	G	C	5225.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr19	8370120	rs2232778	T	C	2936.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr19	8386701	rs2241590	G	A	11516.77	.	AC=2;AF=1.00;AN=2;DB;DP=442;set=Intersection	GT:AD:AF:DP	1/1:0,436:1.00:436
chr19	8387207	rs1057232	G	A	1695.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr19	8387809	rs71702233	GGA	G	4872.73	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr19	8388310	rs11260079	G	A	1632.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr19	8388380	rs11260080	G	T	492.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr19	8389405	rs12981073	G	A	6809.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr19	8389892	rs111905975	GTCC	G	15132.73	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:0,343:1.00:343
chr19	8397700	rs145917648	AAAAAT	A	953.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.35;SOR=2.737;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr19	8398006	rs7249069	C	T	10528.77	.	AC=2;AF=1.00;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	1/1:0,392:1.00:392
chr19	8398121	rs7248298	G	A	3219.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr19	8399272	rs8106699	G	A	4196.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr19	8399628	rs710949	A	G	1400.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr19	8400651	rs11669559	C	G	1220.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr19	8402473	rs2017507	G	T	2216.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:1,72:0.99:73
chr19	8402505	rs1807414	C	T	3098.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:1,108:0.99:109
chr19	8402603	rs737229	C	T	10046.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	1/1:3,383:0.99:386
chr19	8402642	rs737228	C	T	10952.77	.	AC=2;AF=1.00;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	1/1:8,420:0.98:428
chr19	8436164	rs1044250	C	T	3180.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:97,144:0.60:241
chr19	8438716	rs11672433	G	A	1687.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:127,91:0.42:218
chr19	8454318	rs28364584	T	C	491.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:8,22:0.73:30
chr19	8467235	rs2913968	T	C	547.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:53,27:0.34:80
chr19	8467538	rs148680686	C	CTTGTTTTTTTCTTT	433.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.346;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=1.939;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.39;ReadPosRankSum=0.088;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:23,12:0.34:35
chr19	8468337	rs2230876	C	T	4747.77	.	AC=1;AF=0.500;AN=2;DB;DP=847;set=Intersection	GT:AD:AF:DP	0/1:560,275:0.33:835
chr19	8495765	rs2303180	G	A	718.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:44,37:0.46:81
chr19	8495887	rs2303179	T	A	194.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr19	8503345	rs34099346	G	C	1403.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:48,68:0.59:116
chr19	8503574	rs11259981	A	G	1050.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr19	8528277	rs3764570	A	G	710.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:48,33:0.41:81
chr19	8528310	rs8102587	A	G	3591.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr19	8533504	rs7258281	T	C	2485.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.43;SOR=2.080;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr19	8533504	.	TGCTCC	CGCTCC,CGCTCT	642	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.42;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=2;MMLQ=24;MQ=60.0;NF=36,28;NR=10,8;PP=171,642;QD=4.47328722929;SC=ATAGGAAGCATGCTCCGCATG;SbPval=0.54;Source=Platypus;TC=46;TCF=36;TCR=10;TR=46,36;WE=8533517;WS=8533494;set=Platypus	GT:AF:DP	0/1:1.00:46
chr19	8533509	rs59319088	C	T	1266.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.446;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=2.777;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.36;ReadPosRankSum=-0.467;SOR=0.337;set=HC	GT:AD:AF:DP	0/1:17,52:0.75:69
chr19	8536373	rs12973706	A	G	2056.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr19	8548175	rs1599871	A	C	1537.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:45,75:0.62:120
chr19	8551094	rs2230647	T	C	9847.77	.	AC=2;AF=1.00;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	1/1:2,370:0.99:372
chr19	8551852	rs11669139	A	G	5783.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr19	8553630	rs6992	C	T	5743.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr19	8555886	rs2303110	G	C	9661.77	.	AC=1;AF=0.500;AN=2;DB;DP=737;set=Intersection	GT:AD:AF:DP	0/1:292,441:0.60:733
chr19	8563456	rs2910435	C	G	4678.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr19	8564466	rs4239540	C	A	6925.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.815;ClippingRankSum=0.000;DB;DP=258;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.84;ReadPosRankSum=1.693;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:87,171:0.66:258
chr19	8564469	rs4990821	C	G	7246.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.024;ClippingRankSum=0.000;DB;DP=266;ExcessHet=3.0103;FS=0.474;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.24;ReadPosRankSum=1.917;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:91,175:0.66:266
chr19	8564474	rs4239541	G	T	7794.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.640;ClippingRankSum=0.000;DB;DP=285;ExcessHet=3.0103;FS=0.961;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.35;ReadPosRankSum=1.581;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:97,188:0.66:285
chr19	8564523	rs4804305	T	G	8826.77	.	AC=1;AF=0.500;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	0/1:141,265:0.65:406
chr19	8567265	rs11667920	T	C	501.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:11,22:0.67:33
chr19	8576307	rs2910443	A	G	364.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.413;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.19;ReadPosRankSum=-1.717;SOR=0.848;set=HC	GT:AD:AF:DP	0/1:64,23:0.26:87
chr19	8576888	rs2042302	C	G	194.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:30,13:0.30:43
chr19	8576947	rs73002688	G	T	111.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:12,7:0.37:19
chr19	8578035	rs8100431	T	C	706.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:52,33:0.39:85
chr19	8579081	rs2287862	C	T	426.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:77,29:0.27:106
chr19	8591233	.	GTC	G	42.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.456;ClippingRankSum=0.000;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.78;ReadPosRankSum=0.492;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:48,7:0.13:55
chr19	8601051	rs369541772	GTC	G	246.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.359;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=2.523;QD=1.54;ReadPosRankSum=0.746;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:138,22:0.14:160
chr19	8642160	rs4542783	T	C	1946.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:171,101:0.37:272
chr19	8645786	rs7252299	A	C	5956.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr19	8646014	rs369050914	CTTTTTTTTTT	C	561.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.708;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=11.389;MLEAC=1;MLEAF=0.500;MQ=59.81;MQRankSum=0.693;QD=28.09;ReadPosRankSum=2.526;SOR=3.106;set=HC	GT:AD:AF:DP	0/1:5,15:0.75:20
chr19	8649943	rs138501563	G	GAGGGGGC	506.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.181;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.76;ReadPosRankSum=-0.357;SOR=0.617;set=HC	GT:AD:AF:DP	0/1:70,18:0.20:88
chr19	8651562	rs4476282	A	G	1989.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:205,107:0.34:312
chr19	8657074	rs35484313	C	CAG	736.73	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:59,35:0.37:94
chr19	8657092	rs71179860	C	CGGGATGGGGCTGGAAG	701.73	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:41,21:0.34:62
chr19	8657871	rs34134669	G	C	1151.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:76,58:0.43:134
chr19	8662350	rs7248483	C	T	607.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.63;SOR=1.931;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr19	8669873	rs7260282	T	C	3230.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:112,146:0.57:258
chr19	8669931	rs7255721	G	C	4747.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:131,203:0.61:334
chr19	8808373	rs4804079	G	T	4531.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:66,189:0.74:255
chr19	8808900	rs10410943	A	G	5514.77	.	AC=1;AF=0.500;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	0/1:146,249:0.63:395
chr19	8808942	rs2340550	A	G	4808.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:119,212:0.64:331
chr19	8841558	rs28324	T	C	10021.77	.	AC=2;AF=1.00;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	1/1:0,375:1.00:375
chr19	8923117	rs250315	A	G	2007.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr19	8932092	rs2910347	G	A	2035.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr19	8953801	rs2969292	T	C	5265.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr19	8953922	rs2972588	C	T	3416.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr19	8961772	rs2972591	A	G	1648.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr19	8961981	rs1035442	C	G	15329.77	.	AC=2;AF=1.00;AN=2;DB;DP=579;set=Intersection	GT:AD:AF:DP	1/1:1,575:1.00:576
chr19	8962315	rs2910353	C	A	1768.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.496;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=-1.331;QD=13.10;ReadPosRankSum=1.132;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:48,87:0.64:135
chr19	8962434	rs58136393	C	CTTTT	566.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.44;QD=35.42;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr19	8962461	rs1964289	G	C	326.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr19	8974237	rs11670820	G	C	781.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:12,28:0.70:40
chr19	8976471	rs3764554	G	A	1159.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:18,44:0.71:62
chr19	8976504	rs3764553	G	A	904.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:15,34:0.69:49
chr19	8976713	rs3764552	A	G	3048.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:70,139:0.67:209
chr19	8976921	rs11085755	C	T	1117.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:21,43:0.67:64
chr19	8977514	rs1469077	A	G	1098.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:33,48:0.59:81
chr19	8982084	rs3752139	C	G	2767.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.40;SOR=4.472;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chr19	8987133	rs3764555	T	C	4740.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr19	8987348	rs150904213	A	AAG	578.90	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.138;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=4.530;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=0.487;QD=27.57;ReadPosRankSum=-0.840;SOR=2.948;set=HC	GT:AD:AF:DP	0/1:2,19:0.90:21
chr19	8992971	.	T	G	85.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.537;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=5.107;MLEAC=1;MLEAF=0.500;MQ=58.50;MQRankSum=-5.001;QD=2.52;ReadPosRankSum=0.410;SOR=1.949;set=HC	GT:AD:AF:DP	0/1:29,5:0.15:34
chr19	8992972	.	A	G	85.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.282;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;FS=5.014;MLEAC=1;MLEAF=0.500;MQ=58.54;MQRankSum=-5.081;QD=2.45;ReadPosRankSum=0.529;SOR=1.874;set=HC	GT:AD:AF:DP	0/1:30,5:0.14:35
chr19	8992980	.	C	G	76.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.051;ClippingRankSum=0.000;DP=37;ExcessHet=3.0103;FS=5.133;MLEAC=1;MLEAF=0.500;MQ=58.62;MQRankSum=-5.237;QD=2.07;ReadPosRankSum=-0.319;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:32,5:0.14:37
chr19	8992981	.	T	G	76.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.051;ClippingRankSum=0.000;DP=37;ExcessHet=3.0103;FS=5.133;MLEAC=1;MLEAF=0.500;MQ=58.62;MQRankSum=-5.237;QD=2.07;ReadPosRankSum=-0.319;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:32,5:0.14:37
chr19	8993018	rs61742668	G	A	603.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:26,30:0.54:56
chr19	8994113	rs2009979	T	C	3007.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr19	8994285	rs752410	T	A	2812.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.57;SOR=0.931;set=HC	GT:AD:AF:DP	1/1:0,110:1.00:110
chr19	8994373	rs873869	A	G	2491.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr19	8995853	rs11672574	T	C	755.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr19	8997415	.	G	A	347.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.364;ClippingRankSum=0.000;DP=201;ExcessHet=3.0103;FS=14.384;MLEAC=1;MLEAF=0.500;MQ=59.10;MQRankSum=-13.381;QD=1.73;ReadPosRankSum=-4.935;SOR=1.150;set=HC	GT:AD:AF:DP	0/1:179,22:0.11:201
chr19	8997421	.	A	C	320.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.781;ClippingRankSum=0.000;DP=207;ExcessHet=3.0103;FS=14.063;MLEAC=1;MLEAF=0.500;MQ=59.13;MQRankSum=-13.585;QD=1.55;ReadPosRankSum=-3.896;SOR=1.165;set=HC	GT:AD:AF:DP	0/1:185,22:0.11:207
chr19	8997424	.	G	A	320.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.490;ClippingRankSum=0.000;DP=213;ExcessHet=3.0103;FS=13.744;MLEAC=1;MLEAF=0.500;MQ=59.15;MQRankSum=-13.785;QD=1.51;ReadPosRankSum=-2.997;SOR=1.175;set=HC	GT:AD:AF:DP	0/1:191,22:0.10:213
chr19	8997454	rs76629162	G	A	280.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.323;ClippingRankSum=0.000;DB;DP=253;ExcessHet=3.0103;FS=7.109;MLEAC=1;MLEAF=0.500;MQ=59.20;MQRankSum=-15.109;QD=1.11;ReadPosRankSum=2.691;SOR=0.885;set=HC	GT:AD:AF:DP	0/1:229,24:0.09:253
chr19	8997463	rs73001893	C	T	229.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.374;ClippingRankSum=0.000;DB;DP=268;ExcessHet=3.0103;FS=6.979;MLEAC=1;MLEAF=0.500;MQ=59.25;MQRankSum=-15.559;QD=0.86;ReadPosRankSum=2.471;SOR=0.905;set=HC	GT:AD:AF:DP	0/1:244,24:0.09:268
chr19	8997472	rs113387108	C	T	175.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.615;ClippingRankSum=0.000;DB;DP=282;ExcessHet=3.0103;FS=6.950;MLEAC=1;MLEAF=0.500;MQ=59.28;MQRankSum=-15.939;QD=0.63;ReadPosRankSum=0.874;SOR=0.907;set=HC	GT:AD:AF:DP	0/1:257,24:0.09:281
chr19	8997481	.	C	A	118.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.670;ClippingRankSum=0.000;DP=308;ExcessHet=3.0103;FS=6.841;MLEAC=1;MLEAF=0.500;MQ=59.34;MQRankSum=-16.671;QD=0.39;ReadPosRankSum=-0.683;SOR=0.919;set=HC	GT:AD:AF:DP	0/1:283,24:0.08:307
chr19	8997482	.	C	T	118.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.595;ClippingRankSum=0.000;DP=310;ExcessHet=3.0103;FS=6.833;MLEAC=1;MLEAF=0.500;MQ=59.35;MQRankSum=-16.726;QD=0.38;ReadPosRankSum=-0.873;SOR=0.919;set=HC	GT:AD:AF:DP	0/1:285,24:0.08:309
chr19	8998532	rs57902801	T	C	1128.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr19	8998752	.	G	A	30.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.224;ClippingRankSum=0.000;DP=207;ExcessHet=3.0103;FS=1.041;MLEAC=1;MLEAF=0.500;MQ=59.32;MQRankSum=-12.032;QD=0.15;ReadPosRankSum=-1.010;SOR=0.479;set=HC	GT:AD:AF:DP	0/1:188,15:0.07:203
chr19	8998830	.	G	C	318.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.163;ClippingRankSum=0.000;DP=92;ExcessHet=3.0103;FS=17.710;MLEAC=1;MLEAF=0.500;MQ=58.84;MQRankSum=-7.604;QD=3.58;ReadPosRankSum=-2.427;SOR=3.928;set=HC	GT:AD:AF:DP	0/1:75,14:0.16:89
chr19	8998832	.	AT	A	260.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=6.113;ClippingRankSum=0.000;DP=93;ExcessHet=3.0103;FS=17.677;MLEAC=1;MLEAF=0.500;MQ=58.85;MQRankSum=-7.049;QD=2.90;ReadPosRankSum=-2.303;SOR=3.761;set=HC	GT:AD:AF:DP	0/1:77,13:0.14:90
chr19	8998834	.	T	G	272.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.380;ClippingRankSum=0.000;DP=90;ExcessHet=3.0103;FS=15.084;MLEAC=1;MLEAF=0.500;MQ=58.81;MQRankSum=-7.259;QD=3.14;ReadPosRankSum=-2.020;SOR=3.574;set=HC	GT:AD:AF:DP	0/1:75,12:0.14:87
chr19	8998837	.	T	TGA	240.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.152;ClippingRankSum=0.000;DP=85;ExcessHet=3.0103;FS=17.812;MLEAC=1;MLEAF=0.500;MQ=58.74;MQRankSum=-7.019;QD=2.94;ReadPosRankSum=-2.711;SOR=3.767;set=HC	GT:AD:AF:DP	0/1:70,12:0.15:82
chr19	8998839	.	GAC	G	240.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.089;ClippingRankSum=0.000;DP=85;ExcessHet=3.0103;FS=13.194;MLEAC=1;MLEAF=0.500;MQ=58.95;MQRankSum=-6.918;QD=2.94;ReadPosRankSum=-1.221;SOR=3.352;set=HC	GT:AD:AF:DP	0/1:74,8:0.10:82
chr19	8998851	.	T	G	111.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.453;ClippingRankSum=0.000;DP=72;ExcessHet=3.0103;FS=10.605;MLEAC=1;MLEAF=0.500;MQ=59.04;MQRankSum=-6.041;QD=1.62;ReadPosRankSum=-2.153;SOR=3.307;set=HC	GT:AD:AF:DP	0/1:62,7:0.10:69
chr19	8999383	rs79909361	A	G	3525.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.388;ClippingRankSum=0.000;DB;DP=364;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.18;MQRankSum=-11.954;QD=9.82;ReadPosRankSum=0.870;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:256,103:0.29:359
chr19	8999386	rs77049866	A	G	3537.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.405;ClippingRankSum=0.000;DB;DP=366;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.24;MQRankSum=-11.858;QD=9.80;ReadPosRankSum=1.321;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:258,103:0.29:361
chr19	8999429	.	G	T	2236.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.383;ClippingRankSum=0.000;DP=449;ExcessHet=3.0103;FS=1.488;MLEAC=1;MLEAF=0.500;MQ=57.78;MQRankSum=-6.040;QD=5.02;ReadPosRankSum=0.720;SOR=0.851;set=HC	GT:AD:AF:DP	0/1:366,80:0.18:446
chr19	8999438	rs77891947	A	T	6450.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.382;ClippingRankSum=0.000;DB;DP=467;ExcessHet=3.0103;FS=5.173;MLEAC=1;MLEAF=0.500;MQ=57.85;MQRankSum=-11.880;QD=13.90;ReadPosRankSum=-0.189;SOR=1.038;set=HC	GT:AD:AF:DP	0/1:291,173:0.37:464
chr19	8999441	rs80293661	G	A	2678.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.461;ClippingRankSum=0.000;DB;DP=478;ExcessHet=3.0103;FS=6.865;MLEAC=1;MLEAF=0.500;MQ=57.82;MQRankSum=-10.130;QD=5.64;ReadPosRankSum=0.217;SOR=1.257;set=HC	GT:AD:AF:DP	0/1:383,92:0.19:475
chr19	8999443	.	T	C	2699.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.247;ClippingRankSum=0.000;DP=479;ExcessHet=3.0103;FS=5.516;MLEAC=1;MLEAF=0.500;MQ=57.78;MQRankSum=-10.264;QD=5.67;ReadPosRankSum=0.294;SOR=1.233;set=HC	GT:AD:AF:DP	0/1:383,93:0.20:476
chr19	8999449	rs76798407	G	T	6671.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.438;ClippingRankSum=0.000;DB;DP=483;ExcessHet=3.0103;FS=9.685;MLEAC=1;MLEAF=0.500;MQ=57.70;MQRankSum=-12.346;QD=13.90;ReadPosRankSum=-0.498;SOR=1.145;set=HC	GT:AD:AF:DP	0/1:298,182:0.38:480
chr19	8999453	rs11085765	C	T	9079.77	.	AC=1;AF=0.500;AN=2;DB;DP=476;set=Intersection	GT:AD:AF:DP	0/1:182,291:0.62:473
chr19	8999478	rs73493659	T	C	5442.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.156;ClippingRankSum=0.000;DB;DP=479;ExcessHet=3.0103;FS=10.209;MLEAC=1;MLEAF=0.500;MQ=58.08;MQRankSum=-12.522;QD=11.43;ReadPosRankSum=1.508;SOR=1.202;set=HC	GT:AD:AF:DP	0/1:321,155:0.33:476
chr19	8999489	.	C	T	3906.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.196;ClippingRankSum=0.000;DP=468;ExcessHet=3.0103;FS=6.055;MLEAC=1;MLEAF=0.500;MQ=58.16;MQRankSum=7.386;QD=8.40;ReadPosRankSum=-0.623;SOR=0.542;set=HC	GT:AD:AF:DP	0/1:269,196:0.42:465
chr19	8999497	.	G	GACCA	3049.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=4.091;ClippingRankSum=0.000;DP=467;ExcessHet=3.0103;FS=12.580;MLEAC=1;MLEAF=0.500;MQ=58.15;MQRankSum=-14.406;QD=7.11;ReadPosRankSum=4.791;SOR=1.692;set=HC	GT:AD:AF:DP	0/1:332,97:0.23:429
chr19	8999498	.	GCTTT	G	1783.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.565;ClippingRankSum=0.000;DP=438;ExcessHet=3.0103;FS=9.429;MLEAC=1;MLEAF=0.500;MQ=58.25;MQRankSum=-13.958;QD=4.21;ReadPosRankSum=4.135;SOR=1.471;set=HC	GT:AD:AF:DP	0/1:356,68:0.16:424
chr19	8999502	.	T	TCCGA	231.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=6.287;ClippingRankSum=0.000;DP=426;ExcessHet=3.0103;FS=36.340;MLEAC=1;MLEAF=0.500;MQ=58.24;MQRankSum=-2.471;QD=0.55;ReadPosRankSum=1.107;SOR=5.327;set=HC	GT:AD:AF:DP	0/1:387,35:0.08:422
chr19	8999511	rs79907258	G	A	3537.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.187;ClippingRankSum=0.000;DB;DP=421;ExcessHet=3.0103;FS=31.090;MLEAC=1;MLEAF=0.500;MQ=58.25;MQRankSum=-13.763;QD=8.50;ReadPosRankSum=4.452;SOR=2.432;set=HC	GT:AD:AF:DP	0/1:314,102:0.25:416
chr19	8999512	.	G	C	132.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.891;ClippingRankSum=0.000;DP=422;ExcessHet=3.0103;FS=30.741;MLEAC=1;MLEAF=0.500;MQ=58.27;MQRankSum=-2.048;QD=0.32;ReadPosRankSum=1.297;SOR=4.979;set=HC	GT:AD:AF:DP	0/1:387,30:0.07:417
chr19	8999517	.	T	A	1428.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.575;ClippingRankSum=0.000;DP=428;ExcessHet=3.0103;FS=3.927;MLEAC=1;MLEAF=0.500;MQ=58.30;MQRankSum=-15.092;QD=3.38;ReadPosRankSum=2.985;SOR=1.154;set=HC	GT:AD:AF:DP	0/1:363,60:0.14:423
chr19	8999518	rs77650227	A	G	3141.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.887;ClippingRankSum=0.000;DB;DP=422;ExcessHet=3.0103;FS=27.027;MLEAC=1;MLEAF=0.500;MQ=58.31;MQRankSum=-13.943;QD=7.53;ReadPosRankSum=4.057;SOR=2.424;set=HC	GT:AD:AF:DP	0/1:320,97:0.23:417
chr19	8999530	.	C	T	279.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.198;ClippingRankSum=0.000;DP=408;ExcessHet=3.0103;FS=36.383;MLEAC=1;MLEAF=0.500;MQ=58.21;MQRankSum=-1.745;QD=0.70;ReadPosRankSum=2.343;SOR=5.212;set=HC	GT:AD:AF:DP	0/1:369,33:0.08:402
chr19	8999531	.	A	G	2892.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.382;ClippingRankSum=0.000;DP=403;ExcessHet=3.0103;FS=53.345;MLEAC=1;MLEAF=0.500;MQ=58.19;MQRankSum=-14.328;QD=7.29;ReadPosRankSum=0.876;SOR=2.516;set=HC	GT:AD:AF:DP	0/1:308,89:0.22:397
chr19	8999538	rs78334969	T	C	2826.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=10.992;ClippingRankSum=0.000;DB;DP=394;ExcessHet=3.0103;FS=56.874;MLEAC=1;MLEAF=0.500;MQ=58.18;MQRankSum=-14.086;QD=7.29;ReadPosRankSum=-1.501;SOR=2.635;set=HC	GT:AD:AF:DP	0/1:300,88:0.23:388
chr19	8999539	rs76810971	T	C	2793.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=10.708;ClippingRankSum=0.000;DB;DP=393;ExcessHet=3.0103;FS=60.262;MLEAC=1;MLEAF=0.500;MQ=58.18;MQRankSum=-14.170;QD=7.22;ReadPosRankSum=-1.647;SOR=2.741;set=HC	GT:AD:AF:DP	0/1:300,87:0.22:387
chr19	8999540	rs75422108	G	A	2295.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=8.274;ClippingRankSum=0.000;DB;DP=384;ExcessHet=3.0103;FS=46.952;MLEAC=1;MLEAF=0.500;MQ=58.15;MQRankSum=-14.540;QD=6.07;ReadPosRankSum=-2.929;SOR=2.522;set=HC	GT:AD:AF:DP	0/1:304,74:0.20:378
chr19	8999554	.	CC	GT	1692.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.970;ClippingRankSum=0.000;DP=365;ExcessHet=3.0103;FS=44.238;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.22;MQRankSum=-15.193;QD=4.72;ReadPosRankSum=-4.286;SOR=2.700;set=HC	GT:AD:AF:DP	0/1:301,58:0.16:359
chr19	8999560	rs77501519	TG	CA	1260.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=11.591;ClippingRankSum=0.000;DB;DP=347;ExcessHet=3.0103;FS=44.795;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.34;MQRankSum=-14.960;QD=3.81;ReadPosRankSum=-4.303;SOR=2.965;set=HC	GT:AD:AF:DP	0/1:282,49:0.15:331
chr19	8999564	.	C	T	1072.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.843;ClippingRankSum=0.000;DP=334;ExcessHet=3.0103;FS=41.605;MLEAC=1;MLEAF=0.500;MQ=58.44;MQRankSum=-14.106;QD=3.27;ReadPosRankSum=-4.685;SOR=2.955;set=HC	GT:AD:AF:DP	0/1:283,45:0.14:328
chr19	8999575	.	C	T	1189.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.712;ClippingRankSum=0.000;DP=309;ExcessHet=3.0103;FS=44.337;MLEAC=1;MLEAF=0.500;MQ=58.56;MQRankSum=-13.046;QD=3.93;ReadPosRankSum=-5.647;SOR=3.034;set=HC	GT:AD:AF:DP	0/1:257,46:0.15:303
chr19	8999580	.	T	G	610.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.809;ClippingRankSum=0.000;DP=293;ExcessHet=3.0103;FS=19.879;MLEAC=1;MLEAF=0.500;MQ=58.85;MQRankSum=-12.841;QD=2.12;ReadPosRankSum=-4.876;SOR=2.283;set=HC	GT:AD:AF:DP	0/1:258,30:0.10:288
chr19	8999588	.	A	T	544.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.418;ClippingRankSum=0.000;DP=270;ExcessHet=3.0103;FS=29.395;MLEAC=1;MLEAF=0.500;MQ=59.06;MQRankSum=-12.125;QD=2.06;ReadPosRankSum=-4.463;SOR=2.947;set=HC	GT:AD:AF:DP	0/1:236,29:0.11:265
chr19	8999590	.	A	G	250.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.060;ClippingRankSum=0.000;DP=264;ExcessHet=3.0103;FS=16.470;MLEAC=1;MLEAF=0.500;MQ=59.11;MQRankSum=-11.670;QD=0.97;ReadPosRankSum=-4.381;SOR=2.320;set=HC	GT:AD:AF:DP	0/1:237,22:0.08:259
chr19	8999596	.	C	A	160.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.133;ClippingRankSum=0.000;DP=246;ExcessHet=3.0103;FS=27.782;MLEAC=1;MLEAF=0.500;MQ=59.42;MQRankSum=-11.068;QD=0.67;ReadPosRankSum=-1.848;SOR=3.769;set=HC	GT:AD:AF:DP	0/1:224,17:0.07:241
chr19	8999597	.	A	G	95.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.196;ClippingRankSum=0.000;DP=240;ExcessHet=3.0103;FS=22.715;MLEAC=1;MLEAF=0.500;MQ=59.52;MQRankSum=-10.257;QD=0.41;ReadPosRankSum=-0.689;SOR=3.480;set=HC	GT:AD:AF:DP	0/1:220,15:0.06:235
chr19	8999645	.	G	A	122.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.971;ClippingRankSum=0.000;DP=164;ExcessHet=3.0103;FS=22.635;MLEAC=1;MLEAF=0.500;MQ=59.15;MQRankSum=-9.831;QD=0.78;ReadPosRankSum=2.048;SOR=4.148;set=HC	GT:AD:AF:DP	0/1:143,14:0.09:157
chr19	8999659	.	A	T	216.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.148;ClippingRankSum=0.000;DP=130;ExcessHet=3.0103;FS=19.941;MLEAC=1;MLEAF=0.500;MQ=58.93;MQRankSum=-8.791;QD=1.71;ReadPosRankSum=1.219;SOR=4.098;set=HC	GT:AD:AF:DP	0/1:113,14:0.11:127
chr19	8999661	.	G	A	216.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.469;ClippingRankSum=0.000;DP=127;ExcessHet=3.0103;FS=20.038;MLEAC=1;MLEAF=0.500;MQ=58.90;MQRankSum=-8.680;QD=1.75;ReadPosRankSum=1.246;SOR=4.021;set=HC	GT:AD:AF:DP	0/1:110,14:0.11:124
chr19	8999674	.	G	C	263.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.720;ClippingRankSum=0.000;DP=109;ExcessHet=3.0103;FS=19.824;MLEAC=1;MLEAF=0.500;MQ=58.72;MQRankSum=-8.022;QD=2.47;ReadPosRankSum=0.436;SOR=3.890;set=HC	GT:AD:AF:DP	0/1:93,14:0.13:107
chr19	8999675	rs11085766	A	C	2151.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:13,92:0.88:105
chr19	8999680	.	T	TGA	246.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.150;ClippingRankSum=0.000;DP=101;ExcessHet=3.0103;FS=17.255;MLEAC=1;MLEAF=0.500;MQ=58.78;MQRankSum=-7.572;QD=2.47;ReadPosRankSum=0.703;SOR=3.642;set=HC	GT:AD:AF:DP	0/1:87,13:0.13:100
chr19	8999690	.	T	C	189.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.862;ClippingRankSum=0.000;DP=91;ExcessHet=3.0103;FS=12.259;MLEAC=1;MLEAF=0.500;MQ=58.65;MQRankSum=-7.874;QD=2.11;ReadPosRankSum=-0.594;SOR=3.278;set=HC	GT:AD:AF:DP	0/1:79,11:0.12:90
chr19	8999695	.	C	T	204.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.433;ClippingRankSum=0.000;DP=87;ExcessHet=3.0103;FS=12.175;MLEAC=1;MLEAF=0.500;MQ=58.58;MQRankSum=-7.686;QD=2.38;ReadPosRankSum=-1.008;SOR=3.056;set=HC	GT:AD:AF:DP	0/1:75,11:0.13:86
chr19	8999696	.	C	G	204.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.382;ClippingRankSum=0.000;DP=85;ExcessHet=3.0103;FS=9.701;MLEAC=1;MLEAF=0.500;MQ=58.55;MQRankSum=-8.015;QD=2.44;ReadPosRankSum=-0.636;SOR=2.799;set=HC	GT:AD:AF:DP	0/1:74,10:0.12:84
chr19	8999701	.	T	C	144.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.900;ClippingRankSum=0.000;DP=74;ExcessHet=3.0103;FS=7.237;MLEAC=1;MLEAF=0.500;MQ=58.33;MQRankSum=-7.907;QD=1.98;ReadPosRankSum=-1.210;SOR=2.419;set=HC	GT:AD:AF:DP	0/1:64,9:0.12:73
chr19	8999709	.	C	CTTCA	153.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.956;ClippingRankSum=0.000;DP=66;ExcessHet=3.0103;FS=4.672;MLEAC=1;MLEAF=0.500;MQ=58.13;MQRankSum=-7.500;QD=2.33;ReadPosRankSum=-2.442;SOR=1.642;set=HC	GT:AD:AF:DP	0/1:57,9:0.14:66
chr19	9000169	.	C	T	911.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.274;ClippingRankSum=0.000;DP=177;ExcessHet=3.0103;FS=34.081;MLEAC=1;MLEAF=0.500;MQ=58.50;MQRankSum=-11.878;QD=5.21;ReadPosRankSum=-4.476;SOR=3.389;set=HC	GT:AD:AF:DP	0/1:144,31:0.18:175
chr19	9000170	.	A	G	905.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.843;ClippingRankSum=0.000;DP=181;ExcessHet=3.0103;FS=29.361;MLEAC=1;MLEAF=0.500;MQ=58.39;MQRankSum=-12.077;QD=5.06;ReadPosRankSum=-4.586;SOR=2.981;set=HC	GT:AD:AF:DP	0/1:146,33:0.18:179
chr19	9000185	.	A	G	1241.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.997;ClippingRankSum=0.000;DP=204;ExcessHet=3.0103;FS=46.223;MLEAC=1;MLEAF=0.500;MQ=58.05;MQRankSum=-13.020;QD=6.18;ReadPosRankSum=-2.610;SOR=3.588;set=HC	GT:AD:AF:DP	0/1:160,41:0.20:201
chr19	9000187	.	C	T	1319.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.763;ClippingRankSum=0.000;DP=206;ExcessHet=3.0103;FS=46.499;MLEAC=1;MLEAF=0.500;MQ=58.01;MQRankSum=-13.103;QD=6.50;ReadPosRankSum=-2.339;SOR=3.666;set=HC	GT:AD:AF:DP	0/1:161,42:0.21:203
chr19	9000194	.	G	A	1484.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.813;ClippingRankSum=0.000;DP=218;ExcessHet=3.0103;FS=59.407;MLEAC=1;MLEAF=0.500;MQ=57.77;MQRankSum=-13.812;QD=6.94;ReadPosRankSum=-1.991;SOR=3.983;set=HC	GT:AD:AF:DP	0/1:166,48:0.22:214
chr19	9000205	.	C	A	1487.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.044;ClippingRankSum=0.000;DP=214;ExcessHet=3.0103;FS=56.983;MLEAC=1;MLEAF=0.500;MQ=57.79;MQRankSum=-14.006;QD=7.08;ReadPosRankSum=-1.428;SOR=3.973;set=HC	GT:AD:AF:DP	0/1:162,48:0.23:210
chr19	9000206	rs4994075	A	G	1496.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.795;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=56.983;MLEAC=1;MLEAF=0.500;MQ=57.79;MQRankSum=-14.006;QD=7.13;ReadPosRankSum=-1.616;SOR=3.973;set=HC	GT:AD:AF:DP	0/1:162,48:0.23:210
chr19	9000326	rs35743385	G	C	2170.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr19	9000666	rs76925168	G	A	536.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:15,22:0.59:37
chr19	9001822	rs12976111	A	G	11764.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr19	9001833	rs12976122	A	G	12132.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.10;SOR=0.731;set=HC	GT:AD:AF:DP	1/1:0,269:1.00:269
chr19	9001833	.	ATG	GTA	2947	.	AC=2;AF=1.00;AN=2;BRF=0.46;FR=1.0000;HP=1;HapScore=1;MGOF=4;MMLQ=24;MQ=59.47;NF=84;NR=82;PP=2947;QD=20;SC=GTACTCACTCATGGGTCCAGA;SbPval=0.54;Source=Platypus;TC=170;TCF=86;TCR=84;TR=166;WE=9001843;WS=9001812;set=Platypus	GT:AD:AF:DP	1/1:4,166:0.98:170
chr19	9001835	rs12985778	G	A	12107.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.52;SOR=0.739;set=HC	GT:AD:AF:DP	1/1:0,266:1.00:266
chr19	9001986	rs12461757	C	A	2289.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr19	9002113	rs12462672	A	G	2591.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr19	9002493	rs77972891	T	C	2262.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.814;ClippingRankSum=0.000;DB;DP=358;ExcessHet=3.0103;FS=6.534;MLEAC=1;MLEAF=0.500;MQ=57.77;MQRankSum=-15.818;QD=6.37;ReadPosRankSum=0.451;SOR=0.453;set=HC	GT:AD:AF:DP	0/1:226,129:0.36:355
chr19	9002504	rs78327556	T	C	1741.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.964;ClippingRankSum=0.000;DB;DP=374;ExcessHet=3.0103;FS=3.749;MLEAC=1;MLEAF=0.500;MQ=57.93;MQRankSum=-15.665;QD=4.79;ReadPosRankSum=2.188;SOR=0.513;set=HC	GT:AD:AF:DP	0/1:253,111:0.30:364
chr19	9002519	rs150783178	G	C	1595.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.887;ClippingRankSum=0.000;DB;DP=386;ExcessHet=3.0103;FS=4.513;MLEAC=1;MLEAF=0.500;MQ=58.12;MQRankSum=-16.261;QD=4.23;ReadPosRankSum=1.040;SOR=0.522;set=HC	GT:AD:AF:DP	0/1:274,103:0.27:377
chr19	9002576	rs80214581	T	C	78.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.662;ClippingRankSum=0.000;DB;DP=395;ExcessHet=3.0103;FS=6.933;MLEAC=1;MLEAF=0.500;MQ=58.67;MQRankSum=-15.316;QD=0.20;ReadPosRankSum=-4.307;SOR=1.190;set=HC	GT:AD:AF:DP	0/1:349,44:0.11:393
chr19	9002587	rs201053591	C	T	433.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.751;ClippingRankSum=0.000;DB;DP=385;ExcessHet=3.0103;FS=12.601;MLEAC=1;MLEAF=0.500;MQ=58.72;MQRankSum=-19.497;QD=1.13;ReadPosRankSum=-3.581;SOR=1.498;set=HC	GT:AD:AF:DP	0/1:339,44:0.11:383
chr19	9002597	.	C	T	225.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.277;ClippingRankSum=0.000;DP=376;ExcessHet=3.0103;FS=16.903;MLEAC=1;MLEAF=0.500;MQ=58.85;MQRankSum=-19.308;QD=0.60;ReadPosRankSum=-4.505;SOR=1.865;set=HC	GT:AD:AF:DP	0/1:340,35:0.09:375
chr19	9003217	rs60430468	GA	G	887.73	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:33,57:0.63:90
chr19	9003618	rs11085776	C	T	5419.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:4,209:0.98:213
chr19	9003645	rs11085777	G	A	2794.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:89,131:0.60:220
chr19	9003706	rs11085778	T	G	4573.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.99;SOR=1.001;set=HC	GT:AD:AF:DP	1/1:0,176:1.00:176
chr19	9003749	rs11085779	G	T	2503.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr19	9005041	rs62118260	T	C	1700.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr19	9005548	rs200083222	G	C	41.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.117;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=3.978;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-4.965;QD=0.52;ReadPosRankSum=-1.923;SOR=0.215;set=HC	GT:AD:AF:DP	0/1:74,6:0.07:80
chr19	9005556	rs77817869	T	C	72.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.219;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=3.129;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-5.665;QD=0.83;ReadPosRankSum=-3.039;SOR=0.255;set=HC	GT:AD:AF:DP	0/1:78,10:0.11:88
chr19	9005674	rs4804091	G	A	626.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.539;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=1.442;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.02;ReadPosRankSum=-0.550;SOR=0.828;set=HC	GT:AD:AF:DP	0/1:115,41:0.26:156
chr19	9005719	rs4804375	A	G	3804.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:1,146:0.99:147
chr19	9006370	rs79341062	A	G	1396.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.362;ClippingRankSum=0.000;DB;DP=228;ExcessHet=3.0103;FS=8.111;MLEAC=1;MLEAF=0.500;MQ=58.09;MQRankSum=-9.388;QD=6.35;ReadPosRankSum=-1.623;SOR=1.297;set=HC	GT:AD:AF:DP	0/1:155,65:0.30:220
chr19	9006463	rs11668219	C	G	6510.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr19	9007630	rs73005873	G	A	4223.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:127,193:0.60:320
chr19	9007748	rs11673136	A	G	2425.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr19	9008393	rs78716083	T	C	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.001;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=1.761;MLEAC=1;MLEAF=0.500;MQ=58.56;MQRankSum=-7.325;QD=0.59;ReadPosRankSum=-0.132;SOR=0.985;set=HC	GT:AD:AF:DP	0/1:61,6:0.09:67
chr19	9008394	rs77966417	G	A	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.425;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=1.761;MLEAC=1;MLEAF=0.500;MQ=58.56;MQRankSum=-7.325;QD=0.59;ReadPosRankSum=-0.122;SOR=0.985;set=HC	GT:AD:AF:DP	0/1:61,6:0.09:67
chr19	9008412	rs78276830	G	T	41.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.299;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=2.168;MLEAC=1;MLEAF=0.500;MQ=57.60;MQRankSum=-6.737;QD=0.89;ReadPosRankSum=-0.109;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:42,5:0.11:47
chr19	9008413	.	A	G	55.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.871;ClippingRankSum=0.000;DP=48;ExcessHet=3.0103;FS=2.168;MLEAC=1;MLEAF=0.500;MQ=57.60;MQRankSum=-6.737;QD=1.19;ReadPosRankSum=-0.091;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:42,5:0.11:47
chr19	9009851	rs75371087	C	T	324.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.069;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=1.725;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.02;ReadPosRankSum=0.792;SOR=1.151;set=HC	GT:AD:AF:DP	0/1:20,16:0.44:36
chr19	9012905	.	T	TG	833.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.416;ClippingRankSum=0.000;DP=389;ExcessHet=3.0103;FS=0.580;MLEAC=1;MLEAF=0.500;MQ=58.58;MQRankSum=-14.056;QD=2.21;ReadPosRankSum=3.205;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:333,45:0.12:378
chr19	9012910	.	GT	G	833.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.584;ClippingRankSum=0.000;DP=377;ExcessHet=3.0103;FS=1.231;MLEAC=1;MLEAF=0.500;MQ=58.60;MQRankSum=-14.334;QD=2.22;ReadPosRankSum=2.767;SOR=0.596;set=HC	GT:AD:AF:DP	0/1:330,45:0.12:375
chr19	9012918	rs75899847	C	T	864.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.451;ClippingRankSum=0.000;DB;DP=356;ExcessHet=3.0103;FS=2.019;MLEAC=1;MLEAF=0.500;MQ=58.54;MQRankSum=-14.258;QD=2.44;ReadPosRankSum=2.093;SOR=0.519;set=HC	GT:AD:AF:DP	0/1:310,44:0.12:354
chr19	9012930	rs76135098	C	T	575.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.238;ClippingRankSum=0.000;DB;DP=300;ExcessHet=3.0103;FS=8.212;MLEAC=1;MLEAF=0.500;MQ=58.45;MQRankSum=-15.307;QD=1.99;ReadPosRankSum=0.019;SOR=0.515;set=HC	GT:AD:AF:DP	0/1:254,36:0.12:290
chr19	9012937	.	A	G	607.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.421;ClippingRankSum=0.000;DP=261;ExcessHet=3.0103;FS=8.609;MLEAC=1;MLEAF=0.500;MQ=58.77;MQRankSum=-14.353;QD=2.35;ReadPosRankSum=-1.768;SOR=0.510;set=HC	GT:AD:AF:DP	0/1:225,34:0.13:259
chr19	9012947	.	G	A	599.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.130;ClippingRankSum=0.000;DP=229;ExcessHet=3.0103;FS=7.942;MLEAC=1;MLEAF=0.500;MQ=58.85;MQRankSum=-13.216;QD=2.64;ReadPosRankSum=-3.139;SOR=0.511;set=HC	GT:AD:AF:DP	0/1:197,30:0.13:227
chr19	9012958	.	T	C	2962	.	AC=1;AF=0.500;AN=2;BRF=0.65;FR=0.5000;HP=3;HapScore=1;MGOF=46;MMLQ=27;MQ=55.0;NF=20;NR=51;PP=2962;QD=20;SC=GAGTTTGCAATAGACTTATCT;SbPval=0.71;Source=Platypus;TC=206;TCF=66;TCR=140;TR=71;WE=9012966;WS=9012898;set=Platypus	GT:AD:AF:DP	0/1:135,71:0.34:206
chr19	9014405	rs74199498	C	CT	418.73	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:39,20:0.34:59
chr19	9019306	.	T	A	463.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.248;ClippingRankSum=0.000;DP=332;ExcessHet=3.0103;FS=13.873;MLEAC=1;MLEAF=0.500;MQ=59.20;MQRankSum=-6.774;QD=1.44;ReadPosRankSum=-6.218;SOR=1.806;set=HC	GT:AD:AF:DP	0/1:289,33:0.10:322
chr19	9019313	.	C	G	517.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.337;ClippingRankSum=0.000;DP=332;ExcessHet=3.0103;FS=15.563;MLEAC=1;MLEAF=0.500;MQ=59.18;MQRankSum=-7.742;QD=1.62;ReadPosRankSum=-4.437;SOR=1.858;set=HC	GT:AD:AF:DP	0/1:286,34:0.11:320
chr19	9019315	.	A	C	611.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.874;ClippingRankSum=0.000;DP=333;ExcessHet=3.0103;FS=13.087;MLEAC=1;MLEAF=0.500;MQ=59.02;MQRankSum=-8.515;QD=1.92;ReadPosRankSum=-3.745;SOR=1.679;set=HC	GT:AD:AF:DP	0/1:283,36:0.11:319
chr19	9019320	.	C	G	659.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.635;ClippingRankSum=0.000;DP=330;ExcessHet=3.0103;FS=10.970;MLEAC=1;MLEAF=0.500;MQ=59.01;MQRankSum=-8.215;QD=2.09;ReadPosRankSum=-2.681;SOR=1.536;set=HC	GT:AD:AF:DP	0/1:278,38:0.12:316
chr19	9019348	.	A	G	1663.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.772;ClippingRankSum=0.000;DP=289;ExcessHet=3.0103;FS=11.950;MLEAC=1;MLEAF=0.500;MQ=58.75;MQRankSum=-6.677;QD=6.05;ReadPosRankSum=-1.026;SOR=1.476;set=HC	GT:AD:AF:DP	0/1:219,56:0.20:275
chr19	9019352	.	T	C	1666.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.873;ClippingRankSum=0.000;DP=284;ExcessHet=3.0103;FS=9.260;MLEAC=1;MLEAF=0.500;MQ=58.73;MQRankSum=-6.603;QD=6.17;ReadPosRankSum=-0.557;SOR=1.332;set=HC	GT:AD:AF:DP	0/1:214,56:0.21:270
chr19	9019353	.	G	T	1669.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.486;ClippingRankSum=0.000;DP=284;ExcessHet=3.0103;FS=8.015;MLEAC=1;MLEAF=0.500;MQ=58.73;MQRankSum=-6.603;QD=6.18;ReadPosRankSum=-0.456;SOR=1.275;set=HC	GT:AD:AF:DP	0/1:214,56:0.21:270
chr19	9019371	.	A	C	1130.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.914;ClippingRankSum=0.000;DP=226;ExcessHet=3.0103;FS=53.586;MLEAC=1;MLEAF=0.500;MQ=58.77;MQRankSum=-5.648;QD=5.33;ReadPosRankSum=1.843;SOR=4.847;set=HC	GT:AD:AF:DP	0/1:173,39:0.18:212
chr19	9019374	.	A	G	1130.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.187;ClippingRankSum=0.000;DP=221;ExcessHet=3.0103;FS=53.633;MLEAC=1;MLEAF=0.500;MQ=58.66;MQRankSum=-5.874;QD=5.46;ReadPosRankSum=0.855;SOR=4.857;set=HC	GT:AD:AF:DP	0/1:167,40:0.19:207
chr19	9019376	.	A	C	1145.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.997;ClippingRankSum=0.000;DP=220;ExcessHet=3.0103;FS=53.269;MLEAC=1;MLEAF=0.500;MQ=58.66;MQRankSum=-5.857;QD=5.56;ReadPosRankSum=0.660;SOR=4.824;set=HC	GT:AD:AF:DP	0/1:166,40:0.19:206
chr19	9019377	.	A	C	1145.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.613;ClippingRankSum=0.000;DP=218;ExcessHet=3.0103;FS=50.779;MLEAC=1;MLEAF=0.500;MQ=58.65;MQRankSum=-5.823;QD=5.62;ReadPosRankSum=0.376;SOR=4.809;set=HC	GT:AD:AF:DP	0/1:164,40:0.20:204
chr19	9019378	.	T	C	1151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.463;ClippingRankSum=0.000;DP=217;ExcessHet=3.0103;FS=53.313;MLEAC=1;MLEAF=0.500;MQ=58.64;MQRankSum=-5.805;QD=5.67;ReadPosRankSum=0.252;SOR=4.828;set=HC	GT:AD:AF:DP	0/1:163,40:0.20:203
chr19	9019605	rs12981679	C	G	2473.73	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr19	9020153	rs75217292	C	T	1002.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.394;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=4.008;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.83;ReadPosRankSum=-1.107;SOR=0.441;set=HC	GT:AD:AF:DP	0/1:118,54:0.31:172
chr19	9020153	.	CA	TG	487	.	AC=1;AF=0.500;AN=2;BRF=0.38;FR=0.5000;HP=1;HapScore=1;MGOF=10;MMLQ=28;MQ=60.0;NF=17;NR=24;PP=487;QD=13.1821432893;SC=CCATCCTTCTCAGACCTGGGG;SbPval=0.27;Source=Platypus;TC=129;TCF=44;TCR=85;TR=41;WE=9020167;WS=9020143;set=Platypus	GT:AD:AF:DP	0/1:88,41:0.32:129
chr19	9020154	rs11882881	A	G	5731.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.13;SOR=1.388;set=HC	GT:AD:AF:DP	1/1:0,173:1.00:173
chr19	9020211	rs11882373	C	T	1885.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr19	9021275	rs7246797	G	C	531.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:37,23:0.38:60
chr19	9024446	rs192871785	G	A	888.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:16,35:0.69:51
chr19	9024758	rs1862463	T	C	630.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:56,30:0.35:86
chr19	9025536	.	G	T	186.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.618;ClippingRankSum=0.000;DP=78;ExcessHet=3.0103;FS=7.164;MLEAC=1;MLEAF=0.500;MQ=59.52;MQRankSum=-8.688;QD=2.43;ReadPosRankSum=-3.758;SOR=2.280;set=HC	GT:AD:AF:DP	0/1:68,9:0.12:77
chr19	9025539	.	T	C	210.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.046;ClippingRankSum=0.000;DP=82;ExcessHet=3.0103;FS=7.040;MLEAC=1;MLEAF=0.500;MQ=59.49;MQRankSum=-8.912;QD=2.60;ReadPosRankSum=-3.552;SOR=2.497;set=HC	GT:AD:AF:DP	0/1:71,10:0.12:81
chr19	9025542	.	T	G	189.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.184;ClippingRankSum=0.000;DP=87;ExcessHet=3.0103;FS=9.584;MLEAC=1;MLEAF=0.500;MQ=59.50;MQRankSum=-9.185;QD=2.21;ReadPosRankSum=-3.143;SOR=2.801;set=HC	GT:AD:AF:DP	0/1:75,11:0.13:86
chr19	9025545	.	A	C	219.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.495;ClippingRankSum=0.000;DP=93;ExcessHet=3.0103;FS=12.196;MLEAC=1;MLEAF=0.500;MQ=59.53;MQRankSum=-9.508;QD=2.39;ReadPosRankSum=-2.308;SOR=3.098;set=HC	GT:AD:AF:DP	0/1:81,11:0.12:92
chr19	9025546	.	G	C	201.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.244;ClippingRankSum=0.000;DP=98;ExcessHet=3.0103;FS=14.850;MLEAC=1;MLEAF=0.500;MQ=59.53;MQRankSum=-9.766;QD=2.08;ReadPosRankSum=-2.263;SOR=3.456;set=HC	GT:AD:AF:DP	0/1:85,12:0.12:97
chr19	9025549	.	A	G	288.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.713;ClippingRankSum=0.000;DP=102;ExcessHet=3.0103;FS=14.838;MLEAC=1;MLEAF=0.500;MQ=59.55;MQRankSum=-9.970;QD=2.86;ReadPosRankSum=-1.766;SOR=3.538;set=HC	GT:AD:AF:DP	0/1:89,12:0.12:101
chr19	9025551	.	T	G	318.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.230;ClippingRankSum=0.000;DP=105;ExcessHet=3.0103;FS=17.327;MLEAC=1;MLEAF=0.500;MQ=59.47;MQRankSum=-10.113;QD=3.07;ReadPosRankSum=-2.300;SOR=3.786;set=HC	GT:AD:AF:DP	0/1:90,14:0.13:104
chr19	9025556	.	G	C	399.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.793;ClippingRankSum=0.000;DP=110;ExcessHet=3.0103;FS=23.081;MLEAC=1;MLEAF=0.500;MQ=59.45;MQRankSum=-10.353;QD=3.67;ReadPosRankSum=-2.008;SOR=4.266;set=HC	GT:AD:AF:DP	0/1:94,15:0.14:109
chr19	9025561	.	G	T	471.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.803;ClippingRankSum=0.000;DP=119;ExcessHet=3.0103;FS=28.554;MLEAC=1;MLEAF=0.500;MQ=59.41;MQRankSum=-10.768;QD=4.00;ReadPosRankSum=-2.202;SOR=4.770;set=HC	GT:AD:AF:DP	0/1:100,18:0.15:118
chr19	9025562	.	C	A	471.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.450;ClippingRankSum=0.000;DP=122;ExcessHet=3.0103;FS=31.447;MLEAC=1;MLEAF=0.500;MQ=59.41;MQRankSum=-10.902;QD=3.90;ReadPosRankSum=-2.266;SOR=4.895;set=HC	GT:AD:AF:DP	0/1:102,19:0.16:121
chr19	9025568	.	G	A	460.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.251;ClippingRankSum=0.000;DP=154;ExcessHet=3.0103;FS=36.733;MLEAC=1;MLEAF=0.500;MQ=58.65;MQRankSum=-8.389;QD=3.11;ReadPosRankSum=-1.045;SOR=4.432;set=HC	GT:AD:AF:DP	0/1:126,22:0.15:148
chr19	9025584	rs77811999	T	G	678.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.447;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=4.024;MLEAC=1;MLEAF=0.500;MQ=58.21;MQRankSum=-13.518;QD=3.59;ReadPosRankSum=-2.914;SOR=0.422;set=HC	GT:AD:AF:DP	0/1:140,49:0.26:189
chr19	9025604	rs200791776	A	G	799.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.646;ClippingRankSum=0.000;DB;DP=278;ExcessHet=3.0103;FS=4.134;MLEAC=1;MLEAF=0.500;MQ=58.41;MQRankSum=-15.209;QD=2.97;ReadPosRankSum=-0.269;SOR=0.469;set=HC	GT:AD:AF:DP	0/1:206,63:0.23:269
chr19	9025669	rs200046834	G	A	169.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.785;ClippingRankSum=0.000;DB;DP=277;ExcessHet=3.0103;FS=59.774;MLEAC=1;MLEAF=0.500;MQ=59.48;MQRankSum=-16.210;QD=0.61;ReadPosRankSum=-2.483;SOR=6.141;set=HC	GT:AD:AF:DP	0/1:253,24:0.09:277
chr19	9025671	.	G	C	189.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.811;ClippingRankSum=0.000;DP=280;ExcessHet=3.0103;FS=56.722;MLEAC=1;MLEAF=0.500;MQ=59.50;MQRankSum=-16.285;QD=0.68;ReadPosRankSum=-2.334;SOR=6.033;set=HC	GT:AD:AF:DP	0/1:257,23:0.08:280
chr19	9025673	.	G	T	157.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.656;ClippingRankSum=0.000;DP=275;ExcessHet=3.0103;FS=56.433;MLEAC=1;MLEAF=0.500;MQ=59.49;MQRankSum=-16.137;QD=0.57;ReadPosRankSum=-2.856;SOR=6.011;set=HC	GT:AD:AF:DP	0/1:252,23:0.08:275
chr19	9025676	.	GGC	G	115.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=8.722;ClippingRankSum=0.000;DP=277;ExcessHet=3.0103;FS=50.698;MLEAC=1;MLEAF=0.500;MQ=59.52;MQRankSum=-16.164;QD=0.42;ReadPosRankSum=-2.625;SOR=5.812;set=HC	GT:AD:AF:DP	0/1:256,21:0.08:277
chr19	9025679	.	A	AAG	79.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=7.383;ClippingRankSum=0.000;DP=266;ExcessHet=3.0103;FS=49.982;MLEAC=1;MLEAF=0.500;MQ=59.50;MQRankSum=-15.836;QD=0.30;ReadPosRankSum=-2.994;SOR=5.746;set=HC	GT:AD:AF:DP	0/1:245,21:0.08:266
chr19	9028432	rs10411029	C	T	1775.77	.	AC=1;AF=0.500;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	0/1:238,103:0.30:341
chr19	9038597	rs12980941	C	T	140.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:13,8:0.38:21
chr19	9043347	rs10425275	G	A	196.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:25,11:0.31:36
chr19	9043534	rs35774058	A	AG	1431.73	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:28,55:0.66:83
chr19	9043680	rs2059135	G	A	332.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:6,15:0.71:21
chr19	9045518	rs12984694	T	G	2118.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:1,74:0.99:75
chr19	9046876	rs4804378	G	T	4097.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:90,171:0.66:261
chr19	9047267	rs10410169	C	T	1605.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:158,80:0.34:238
chr19	9047305	rs10415818	G	A	1512.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:151,81:0.35:232
chr19	9048035	rs10417358	G	C	962.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:99,52:0.34:151
chr19	9048170	rs10417600	G	A	1200.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:111,64:0.37:175
chr19	9048320	rs56334501	C	T	2177.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:87,102:0.54:189
chr19	9048421	rs56194405	T	C	1707.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:58,77:0.57:135
chr19	9049149	rs12461007	G	A	1979.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:175,101:0.37:276
chr19	9049339	rs11883220	C	G	7869.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr19	9049396	rs10425044	C	G	2129.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:167,104:0.38:271
chr19	9049910	rs56307190	C	T	4234.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:125,190:0.60:315
chr19	9056930	rs918535	T	G	1765.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:195,96:0.33:291
chr19	9056941	rs10410136	A	G	1925.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:202,104:0.34:306
chr19	9056989	rs4804381	C	G	5066.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:112,210:0.65:322
chr19	9057408	rs1423051	A	G	5463.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr19	9057687	rs1895364	A	G	6198.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr19	9057704	rs12984130	G	T	1697.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:145,90:0.38:235
chr19	9057721	rs2216662	C	T	3241.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:89,142:0.61:231
chr19	9057750	rs12982113	T	A	1336.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:131,70:0.35:201
chr19	9057896	rs12984471	G	C	2063.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:160,104:0.39:264
chr19	9058624	rs11878666	G	A	3203.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:67,138:0.67:205
chr19	9058942	rs1833778	C	T	3305.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:91,145:0.61:236
chr19	9059232	rs12710265	T	C	2224.77	.	AC=1;AF=0.500;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	0/1:253,125:0.33:378
chr19	9059808	rs7508222	A	G	6865.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr19	9060059	rs12977368	A	C	1200.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:167,65:0.28:232
chr19	9060085	rs4804382	C	T	3602.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:55,147:0.73:202
chr19	9060125	rs12972088	G	A	736.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.823;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=0.630;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.88;ReadPosRankSum=-0.645;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:145,45:0.24:190
chr19	9060541	rs11882256	C	T	3755.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:109,170:0.61:279
chr19	9060572	rs56405542	G	A	3236.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:87,137:0.61:224
chr19	9060605	rs2194168	G	A	5479.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr19	9060812	rs1820099	T	C	8442.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,318:1.00:318
chr19	9061559	rs1423052	C	G	3942.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:138,175:0.56:313
chr19	9062415	rs12978757	T	G	6790.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr19	9062544	rs2547063	T	G	6491.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr19	9066874	rs12609150	G	T	3326.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:88,153:0.63:241
chr19	9069792	rs1862458	G	A	2436.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:45,102:0.69:147
chr19	9069892	rs1862460	A	C	2825.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:79,122:0.61:201
chr19	9070194	rs1344572	A	G	8907.77	.	AC=1;AF=0.500;AN=2;DB;DP=627;set=Intersection	GT:AD:AF:DP	0/1:219,401:0.65:620
chr19	9070225	rs1559172	G	C	8103.77	.	AC=1;AF=0.500;AN=2;DB;DP=542;set=Intersection	GT:AD:AF:DP	0/1:180,358:0.67:538
chr19	9070837	rs2547067	G	A	5005.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:109,213:0.66:322
chr19	9071763	rs10422567	T	A	2812.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:63,121:0.66:184
chr19	9071834	rs17000803	G	C	2353.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:62,105:0.63:167
chr19	9072221	rs66498329	G	A	2907.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:82,132:0.62:214
chr19	9072875	rs73009098	G	A	2526.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:65,108:0.62:173
chr19	9072975	rs17000816	G	A	2650.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:49,117:0.70:166
chr19	9073817	rs144982930	C	T	3152.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:83,134:0.62:217
chr19	9074073	rs72486387	G	A	4091.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:72,173:0.71:245
chr19	9077581	rs73011014	G	T	3059.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:85,137:0.62:222
chr19	9080343	.	GAAAGAAAAGAAAAGAAAAGA	G	1995.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.490;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.20;MQRankSum=0.000;QD=41.58;ReadPosRankSum=1.734;SOR=1.382;set=HC	GT:AD:AF:DP	1/1:1,47:0.98:48
chr19	9080462	rs2547065	C	G	3833.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:76,170:0.69:246
chr19	9083143	rs7245949	G	A	1421.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.227;ClippingRankSum=0.000;DB;DP=273;ExcessHet=3.0103;FS=0.473;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.27;ReadPosRankSum=-0.347;SOR=0.742;set=HC	GT:AD:AF:DP	0/1:182,88:0.33:270
chr19	9083174	rs7245960	G	A	1720.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:173,93:0.35:266
chr19	9083427	rs1609453	A	G	3572.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:89,153:0.63:242
chr19	9083457	rs17000886	C	T	3315.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:91,149:0.62:240
chr19	9084183	rs1609460	G	A	6634.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr19	9084216	rs1609459	T	C	1931.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:135,103:0.43:238
chr19	9084299	rs1609458	T	C	7984.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr19	9085004	rs11085805	T	C	3591.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:91,153:0.63:244
chr19	9085643	rs1574479	A	G	1871.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:69,78:0.53:147
chr19	9086123	rs10402812	A	C	1258.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:117,61:0.34:178
chr19	9086318	rs4520945	G	A	3283.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:93,146:0.61:239
chr19	9086819	rs1823056	G	A	2811.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:75,126:0.63:201
chr19	9087615	rs1596798	T	A	10220.77	.	AC=2;AF=1.00;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	1/1:1,382:1.00:383
chr19	9087758	rs12611293	G	A	4604.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:96,195:0.67:291
chr19	9088017	rs1596797	T	G	9485.77	.	AC=2;AF=1.00;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	1/1:1,351:1.00:352
chr19	9088330	rs17000947	G	A	4027.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:80,181:0.69:261
chr19	9088772	rs17000950	T	C	2641.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:94,123:0.57:217
chr19	9090531	rs12976721	T	C	1364.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:74,61:0.45:135
chr19	9204307	rs4804097	A	G	14718.77	.	AC=2;AF=1.00;AN=2;DB;DP=564;set=Intersection	GT:AD:AF:DP	1/1:0,556:1.00:556
chr19	9212864	rs4804399	A	C	889.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:29,35:0.55:64
chr19	9213026	rs4804400	T	C	5546.77	.	AC=1;AF=0.500;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	0/1:124,249:0.67:373
chr19	9213079	rs4804401	A	C	5359.77	.	AC=1;AF=0.500;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	0/1:137,233:0.63:370
chr19	9213132	rs12610094	A	G	5766.77	.	AC=1;AF=0.500;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	0/1:164,261:0.61:425
chr19	9225387	rs58243883	G	GA	128.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.980;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=2.278;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.517;QD=1.59;ReadPosRankSum=0.138;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:59,22:0.27:81
chr19	9236698	rs111867493	G	GATGGT	1125.73	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:18,29:0.62:47
chr19	9236886	rs10424352	A	G	5819.77	.	AC=1;AF=0.500;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	0/1:176,270:0.61:446
chr19	9237435	rs10407484	A	G	4337.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:81,176:0.68:257
chr19	9237542	rs10414255	T	C	4088.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:102,187:0.65:289
chr19	9237723	rs10414701	T	C	545.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.802;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=4.249;MLEAC=1;MLEAF=0.500;MQ=61.01;MQRankSum=-2.570;QD=13.31;ReadPosRankSum=2.608;SOR=1.828;set=HC	GT:AD:AF:DP	0/1:25,16:0.39:41
chr19	9237732	.	C	CT	179.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.423;ClippingRankSum=0.000;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.94;MQRankSum=-3.598;QD=5.62;ReadPosRankSum=2.579;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:24,8:0.25:32
chr19	9237735	.	C	CTTTTT	536.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.623;ClippingRankSum=0.000;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.71;MQRankSum=-3.222;QD=15.34;ReadPosRankSum=2.652;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:19,16:0.46:35
chr19	9237739	rs201505545	C	T	565.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.375;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=2.160;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=-2.248;QD=16.16;ReadPosRankSum=2.108;SOR=1.514;set=HC	GT:AD:AF:DP	0/1:19,16:0.46:35
chr19	9237746	rs369468829	TTTTC	T,TTCTTTC	1108.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.71;QD=38.23;SOR=3.841;set=HC	GT:AD:AF:DP	1/2:0,13,16:0.45,0.55:29
chr19	9346427	rs1968136	T	C	14966.77	.	AC=2;AF=1.00;AN=2;DB;DP=574;set=Intersection	GT:AD:AF:DP	1/1:2,565:1.00:567
chr19	9346599	rs1985937	C	G	9998.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	1/1:0,344:1.00:344
chr19	9408811	rs55772378	AT	A	399.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.079;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.48;MQRankSum=0.559;QD=16.66;ReadPosRankSum=1.746;SOR=0.446;set=HC	GT:AD:AF:DP	1/1:1,23:0.96:24
chr19	9415942	.	TAC	T	98.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.914;ClippingRankSum=0.000;DP=164;ExcessHet=3.0103;FS=2.417;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.76;ReadPosRankSum=0.750;SOR=1.054;set=HC	GT:AD:AF:DP	0/1:115,15:0.12:130
chr19	9434930	rs10411624	T	C	10706.77	.	AC=2;AF=1.00;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	1/1:0,396:1.00:396
chr19	9435320	rs368039177	GA	G	360.50	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.214;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.79;MQRankSum=0.624;QD=10.01;ReadPosRankSum=0.788;SOR=1.058;set=HC	GT:AD:AF:DP	0/1:6,30:0.83:36
chr19	9448917	rs8113427	T	G	694.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr19	9449149	rs8110197	A	G	838.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr19	9449337	rs8110584	G	A	1641.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr19	9452026	rs55837495	ACT	A	6411.73	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr19	9489132	rs2304110	C	T	6281.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr19	9490358	rs12461520	C	T	1338.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr19	9490814	rs2217652	C	T	8840.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:0,340:1.00:340
chr19	9491210	rs1347165	C	G	1160.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr19	9492141	rs3826783	C	T	11165.77	.	AC=2;AF=1.00;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	1/1:2,400:1.00:402
chr19	9492370	rs2230752	A	T	8058.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:1,284:1.00:285
chr19	9524185	rs2241356	A	G	6690.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:1,238:1.00:239
chr19	9582092	rs3068759	TAAAA	T	1587.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.970;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=5.636;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=27.37;ReadPosRankSum=0.083;SOR=1.492;set=HC	GT:AD:AF:DP	1/1:3,55:0.95:58
chr19	9582164	rs5827059	G	GA	88.87	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr19	9641821	rs34198502	G	A	5379.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:3,183:0.98:186
chr19	9646739	rs888872	C	G	1847.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr19	9673271	rs147918159	CTCT	C	4378.73	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr19	9727945	.	G	A	5217.77	.	AC=1;AF=0.500;AN=2;DP=365;set=Intersection	GT:AD:AF:DP	0/1:132,227:0.63:359
chr19	9771286	rs111723152	G	GA	121.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.545;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.956;QD=0.92;ReadPosRankSum=-0.056;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:106,27:0.20:133
chr19	9804539	rs56153942	C	T	11200.77	.	AC=1;AF=0.500;AN=2;DB;DP=884;set=Intersection	GT:AD:AF:DP	0/1:353,521:0.60:874
chr19	9805397	rs77670201	A	G	7520.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr19	9873820	rs60184154	CA	C	104.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.011;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=1.531;MLEAC=1;MLEAF=0.500;MQ=59.44;MQRankSum=0.000;QD=2.55;ReadPosRankSum=-0.086;SOR=0.374;set=HC	GT:AD:AF:DP	0/1:25,16:0.39:41
chr19	9964823	rs8111802	A	G	2783.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr19	9968139	rs11556087	G	A	5171.77	.	AC=1;AF=0.500;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	0/1:179,238:0.57:417
chr19	9968434	rs2303100	C	T	3980.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr19	10071063	rs10406152	T	C	2030.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr19	10071634	rs918542	T	C	436.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:44,25:0.36:69
chr19	10073744	rs35427045	C	A	342.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:38,19:0.33:57
chr19	10077931	rs3786698	C	G	160.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:30,9:0.23:39
chr19	10079206	rs79625961	G	T	3418.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:89,150:0.63:239
chr19	10080140	rs2277966	C	G	780.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:71,37:0.34:108
chr19	10080619	rs57674179	A	AG	563.73	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:85,31:0.27:116
chr19	10080691	.	T	TG	195	.	AC=1;AF=0.500;AN=2;BRF=0.45;FR=0.5000;HP=5;HapScore=1;MGOF=43;MMLQ=24;MQ=57.53;NF=5;NR=7;PP=195;QD=19.0833333333;SC=TATGGATGAGTGGGGTCTGTA;SbPval=0.04;Source=Platypus;TC=37;TCF=6;TCR=31;TR=12;WE=10080699;WS=10080681;set=Platypus	GT:AD:AF:DP	1/0:25,12:0.32:37
chr19	10081193	rs62104327	T	A	457.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.680;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=1.935;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.44;ReadPosRankSum=0.205;SOR=1.199;set=HC	GT:AD:AF:DP	0/1:26,14:0.35:40
chr19	10081200	rs62104328	T	G	428.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.751;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=1.886;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.99;ReadPosRankSum=0.336;SOR=1.098;set=HC	GT:AD:AF:DP	0/1:26,13:0.33:39
chr19	10081276	rs1895371	C	G	901.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:88,49:0.36:137
chr19	10081322	rs61729461	G	A	1606.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.952;ClippingRankSum=0.000;DB;DP=271;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.02;ReadPosRankSum=1.361;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:180,87:0.33:267
chr19	10082034	rs114936356	G	A	1066.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:103,56:0.35:159
chr19	10083510	rs33996380	CA	C	175.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.919;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=1.999;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.51;ReadPosRankSum=-0.769;SOR=0.352;set=HC	GT:AD:AF:DP	0/1:11,16:0.59:27
chr19	10084292	rs2287813	C	G	1175.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:127,62:0.33:189
chr19	10084551	rs2287811	T	G	2146.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.684;ClippingRankSum=0.000;DB;DP=471;ExcessHet=3.0103;FS=2.811;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.60;ReadPosRankSum=-1.389;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:340,127:0.27:467
chr19	10087200	rs2287810	C	T	164.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.442;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=6.231;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.17;ReadPosRankSum=0.274;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:61,15:0.20:76
chr19	10087886	rs114827216	A	G	1306.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:103,82:0.44:185
chr19	10088204	rs115981461	T	C	1513.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:121,81:0.40:202
chr19	10088271	rs2161468	C	G	1350.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:109,70:0.39:179
chr19	10089262	rs12610207	G	A	728.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:73,44:0.38:117
chr19	10090467	rs60233060	GAA	G	379.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.261;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=1.356;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.84;ReadPosRankSum=0.595;SOR=0.864;set=HC	GT:AD:AF:DP	0/1:43,22:0.34:65
chr19	10090649	rs11879687	A	G	1591.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:40,82:0.67:122
chr19	10090758	rs11882346	C	T	133.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:15,7:0.32:22
chr19	10091267	rs144086896	A	ATCTC	1005.73	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:49,30:0.38:79
chr19	10091294	.	T	TCA	1431.73	.	AC=1;AF=0.500;AN=2;DP=185;set=Intersection	GT:AD:AF:DP	0/1:90,59:0.40:149
chr19	10096482	rs11670705	C	T	1427.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:110,76:0.41:186
chr19	10096681	rs11670525	G	A	1651.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.165;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=8.483;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.80;ReadPosRankSum=-0.657;SOR=1.420;set=HC	GT:AD:AF:DP	0/1:104,49:0.32:153
chr19	10096686	rs1862473	G	A	1589.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.161;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=12.492;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.27;ReadPosRankSum=-1.245;SOR=1.739;set=HC	GT:AD:AF:DP	0/1:95,46:0.33:141
chr19	10097187	rs60604169	G	GC	4388.73	.	AC=1;AF=0.500;AN=2;DB;DP=629;set=Intersection	GT:AD:AF:DP	0/1:411,197:0.32:608
chr19	10097443	rs111955359	T	TAA	474.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.266;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.12;ReadPosRankSum=1.580;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:103,49:0.32:152
chr19	10097536	rs8113693	G	T	403.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:37,22:0.37:59
chr19	10099744	rs11879755	C	T	1991.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.184;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.43;ReadPosRankSum=0.127;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:133,58:0.30:191
chr19	10099748	rs11883111	T	C	2029.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.382;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=0.570;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.20;ReadPosRankSum=-0.203;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:139,60:0.30:199
chr19	10099910	rs2287805	C	T	3641.77	.	AC=1;AF=0.500;AN=2;DB;DP=630;set=Intersection	GT:AD:AF:DP	0/1:400,211:0.35:611
chr19	10100061	rs2287804	C	A	3567.77	.	AC=1;AF=0.500;AN=2;DB;DP=611;set=Intersection	GT:AD:AF:DP	0/1:398,203:0.34:601
chr19	10102177	rs7248892	C	T	181.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:14,8:0.36:22
chr19	10102567	rs7251453	G	A	1118.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:68,54:0.44:122
chr19	10102676	rs7252953	A	G	1318.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:115,72:0.39:187
chr19	10103583	rs2010448	C	T	1899.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:158,96:0.38:254
chr19	10103892	rs11672571	G	A	1479.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:100,66:0.40:166
chr19	10106671	rs3745592	C	G	1804.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:201,105:0.34:306
chr19	10106871	rs10415783	G	A	1870.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:200,104:0.34:304
chr19	10106936	rs1559186	G	C	969.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:89,45:0.34:134
chr19	10108714	rs7254800	G	A	3434.77	.	AC=1;AF=0.500;AN=2;DB;DP=572;set=Intersection	GT:AD:AF:DP	0/1:369,197:0.35:566
chr19	10108850	rs3745594	A	G	4000.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.248;ClippingRankSum=0.000;DB;DP=322;ExcessHet=3.0103;FS=3.229;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.78;ReadPosRankSum=0.033;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:193,120:0.38:313
chr19	10108861	rs3745595	A	G	3662.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:159,98:0.38:257
chr19	10108908	rs143525824	GCA	G	470.73	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:47,23:0.33:70
chr19	10112058	rs8108105	A	C	1238.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr19	10112346	rs2287803	T	C	16804.77	.	AC=2;AF=1.00;AN=2;DB;DP=608;set=Intersection	GT:AD:AF:DP	1/1:0,605:1.00:605
chr19	10116076	rs11085529	G	C	2405.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr19	10131851	rs374839771	TA	T	194.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.502;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=1.139;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.323;QD=2.63;ReadPosRankSum=-0.965;SOR=0.875;set=HC	GT:AD:AF:DP	0/1:50,24:0.32:74
chr19	10149131	rs17210660	G	T	3657.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr19	10149207	rs57198581	G	A	1518.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr19	10149223	rs16997792	A	G	1165.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr19	10160578	rs11085554	C	T	5473.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:1,198:0.99:199
chr19	10165844	rs60321046	G	A	13244.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.880;ClippingRankSum=0.000;DB;DP=303;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=44.00;ReadPosRankSum=-0.921;SOR=1.075;set=HC	GT:AD:AF:DP	1/1:2,299:0.99:301
chr19	10165854	rs56717463	T	C	13803.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.874;ClippingRankSum=0.000;DB;DP=325;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=42.74;ReadPosRankSum=-0.814;SOR=0.934;set=HC	GT:AD:AF:DP	1/1:2,321:0.99:323
chr19	10165932	rs8113341	A	G	11040.77	.	AC=2;AF=1.00;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	1/1:0,416:1.00:416
chr19	10166114	rs10426597	A	G	2856.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr19	10166233	rs10405132	C	T	20852.77	.	AC=2;AF=1.00;AN=2;DB;DP=456;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.24;SOR=1.156;set=HC	GT:AD:AF:DP	1/1:0,451:1.00:451
chr19	10166243	rs10403535	G	T	24647.77	.	AC=2;AF=1.00;AN=2;DB;DP=540;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.16;SOR=1.130;set=HC	GT:AD:AF:DP	1/1:0,534:1.00:534
chr19	10166253	rs10411594	T	C	26167.77	.	AC=2;AF=1.00;AN=2;DB;DP=621;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.69;SOR=1.087;set=HC	GT:AD:AF:DP	1/1:0,613:1.00:613
chr19	10169245	rs1993466	A	G	6453.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr19	10169261	rs11667703	C	T	7358.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr19	10169278	rs4552116	T	G	7519.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr19	10169477	rs11667515	G	A	9892.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:0,354:1.00:354
chr19	10192425	rs112439574	G	GGAA	1197.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=63.82;QD=39.92;SOR=1.143;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr19	10197488	rs139505689	G	GC	2970.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.064;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=4.777;MLEAC=1;MLEAF=0.500;MQ=61.58;MQRankSum=2.518;QD=24.55;ReadPosRankSum=-1.273;SOR=0.334;set=HC	GT:AD:AF:DP	0/1:28,93:0.77:121
chr19	10218030	rs1551570	C	T	467.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:9,18:0.67:27
chr19	10218434	rs55752217	C	T	4845.77	.	AC=1;AF=0.500;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	0/1:123,218:0.64:341
chr19	10218524	rs2305791	C	G	4111.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:70,173:0.71:243
chr19	10221151	rs2305792	C	G	4335.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:101,188:0.65:289
chr19	10222558	rs2010353	G	T	636.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:13,28:0.68:41
chr19	10224526	rs3745600	C	T	7603.77	.	AC=1;AF=0.500;AN=2;DB;DP=499;set=Intersection	GT:AD:AF:DP	0/1:170,323:0.66:493
chr19	10225777	rs7401	A	G	4118.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:100,186:0.65:286
chr19	10226052	rs2305795	G	A	1202.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:27,56:0.67:83
chr19	10226256	rs7710	A	G	3031.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.908;ClippingRankSum=0.000;DB;DP=270;ExcessHet=3.0103;FS=36.064;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.27;ReadPosRankSum=-0.048;SOR=2.271;set=HC	GT:AD:AF:DP	0/1:113,156:0.58:269
chr19	10226340	rs71188883	GTGCC	G	10992.73	.	AC=1;AF=0.500;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	0/1:161,276:0.63:437
chr19	10229240	rs61403454	CA	C	670.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.010;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=2.452;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=-0.422;QD=7.89;ReadPosRankSum=0.202;SOR=1.129;set=HC	GT:AD:AF:DP	0/1:21,64:0.75:85
chr19	10229297	rs11667630	C	A	3318.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:62,146:0.70:208
chr19	10229521	rs2290687	C	T	3151.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:140,172:0.55:312
chr19	10229726	rs149991692	TGGCAGTCCTCACTCACCTCCC	T	4483.73	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:61,112:0.65:173
chr19	10251747	rs2290684	A	G	3020.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:62,122:0.66:184
chr19	10257245	rs2288349	G	A	578.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.782;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=2.645;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.03;ReadPosRankSum=1.440;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:80,35:0.30:115
chr19	10265248	rs2114724	T	C	1926.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:182,107:0.37:289
chr19	10265312	rs721186	T	C	7895.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr19	10267077	rs2228611	T	C	1677.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:182,95:0.34:277
chr19	10270746	rs3079962	GA	G	1769.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.465;ClippingRankSum=0.000;DB;DP=364;ExcessHet=3.0103;FS=0.887;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=2.532;QD=5.27;ReadPosRankSum=-0.409;SOR=0.768;set=HC	GT:AD:AF:DP	0/1:193,143:0.43:336
chr19	10273296	rs5827088	GA	G	297.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.833;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=2.238;MLEAC=1;MLEAF=0.500;MQ=60.78;MQRankSum=3.419;QD=3.82;ReadPosRankSum=-0.043;SOR=0.595;set=HC	GT:AD:AF:DP	0/1:39,39:0.50:78
chr19	10274120	rs62106244	C	T	1978.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:44,86:0.66:130
chr19	10334443	rs2116941	A	C	474.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr19	10334663	rs2116942	T	G	1157.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:109,64:0.37:173
chr19	10363455	rs35087032	C	CT	2164.73	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:53,82:0.61:135
chr19	10370542	rs11115	C	T	5514.77	.	AC=1;AF=0.500;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	0/1:136,241:0.64:377
chr19	10385743	rs5030352	C	G	1081.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:41,48:0.54:89
chr19	10395683	rs5498	A	G	952.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.259;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=1.236;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.67;ReadPosRankSum=0.136;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:146,58:0.28:204
chr19	10400810	rs11575073	C	T	1258.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:29,58:0.67:87
chr19	10402131	rs901886	T	C	2857.77	.	AC=1;AF=0.500;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	0/1:204,147:0.42:351
chr19	10402430	rs115870389	G	T	2194.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:195,112:0.36:307
chr19	10404227	rs2569703	C	G	3693.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr19	10405865	rs10402760	C	T	517.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:21,21:0.50:42
chr19	10406104	rs35318566	G	A	4748.77	.	AC=1;AF=0.500;AN=2;DB;DP=778;set=Intersection	GT:AD:AF:DP	0/1:508,262:0.34:770
chr19	10407169	rs710845	G	C	1225.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:3,50:0.94:53
chr19	10415781	rs2291473	T	C	3017.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:59,133:0.69:192
chr19	10418784	rs281416	A	G	1472.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr19	10419130	rs281417	C	T	3900.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:113,176:0.61:289
chr19	10421385	rs281418	G	C	746.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:19,29:0.60:48
chr19	10425986	rs368835	A	G	694.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.87;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr19	10425994	.	G	GT	36.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.318;ClippingRankSum=0.000;DP=21;ExcessHet=3.0103;FS=1.913;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.16;ReadPosRankSum=1.612;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:10,7:0.41:17
chr19	10425995	rs2358583	G	T	715.77	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=2.006;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=37.67;ReadPosRankSum=1.735;SOR=0.317;set=HC	GT:AD:AF:DP	1/1:1,18:0.95:19
chr19	10426422	rs378395	A	C	7953.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr19	10426628	rs395782	T	C	11463.77	.	AC=2;AF=1.00;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	1/1:0,401:1.00:401
chr19	10428788	rs77438995	C	A	58.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:10,4:0.29:14
chr19	10429120	rs281427	T	C	2256.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr19	10431799	rs281425	G	T	592.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:8,27:0.77:35
chr19	10433253	rs79135132	G	A	626.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:68,31:0.31:99
chr19	10444166	rs35633871	G	A	2097.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:221,109:0.33:330
chr19	10444826	rs2278442	G	A	3583.77	.	AC=1;AF=0.500;AN=2;DB;DP=507;set=Intersection	GT:AD:AF:DP	0/1:311,190:0.38:501
chr19	10449392	rs2304240	A	G	6010.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr19	10450285	rs281414	G	A	7021.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr19	10464687	rs280497	A	G	1532.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:100,80:0.44:180
chr19	10467565	rs12720307	C	T	269.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:30,16:0.35:46
chr19	10468668	rs12720299	C	G	1474.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.446;ClippingRankSum=0.000;DB;DP=287;ExcessHet=3.0103;FS=1.014;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.32;ReadPosRankSum=0.237;SOR=0.785;set=HC	GT:AD:AF:DP	0/1:196,81:0.29:277
chr19	10471977	rs12720279	G	A	230.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:32,13:0.29:45
chr19	10472933	rs280519	A	G	1191.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:166,70:0.30:236
chr19	10473138	rs280520	A	G	2081.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:180,111:0.38:291
chr19	10473392	rs280521	G	A	538.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:35,24:0.41:59
chr19	10475649	rs2304255	C	T	2654.77	.	AC=1;AF=0.500;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	0/1:259,140:0.35:399
chr19	10477072	rs79337061	C	T	961.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:56,41:0.42:97
chr19	10503886	rs2231485	G	C	1442.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:165,82:0.33:247
chr19	10527666	rs148854414	G	A	1174.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:117,66:0.36:183
chr19	10531364	rs112273932	G	T	577.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:56,28:0.33:84
chr19	10543272	rs139275433	CCT	C	1818.73	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:99,61:0.38:160
chr19	10561261	.	A	AT	90.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.925;ClippingRankSum=0.000;DP=98;ExcessHet=3.0103;FS=2.609;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.15;ReadPosRankSum=-0.574;SOR=1.222;set=HC	GT:AD:AF:DP	0/1:60,19:0.24:79
chr19	10600442	rs1048290	G	C	2145.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:180,113:0.39:293
chr19	10625067	rs6511701	A	C	9905.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:0,363:1.00:363
chr19	10654705	rs10423320	C	T	307.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:5,13:0.72:18
chr19	10655351	rs111980498	G	A	186.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:45,12:0.21:57
chr19	10659659	rs2304165	C	T	6822.77	.	AC=1;AF=0.500;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	0/1:149,299:0.67:448
chr19	10659804	rs35786570	C	CT	65.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=0.000;QD=0.53;ReadPosRankSum=1.163;SOR=0.626;set=HC	GT:AD:AF:DP	0/1:103,22:0.18:125
chr19	10665691	rs10419405	T	C	1641.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.04;SOR=1.788;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr19	10665691	.	TTGAC	CTGAC,CTGAT	504	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.33;FR=0.5000,0.5000;HP=2;HapScore=2;MGOF=1;MMLQ=27;MQ=60.0;NF=26,18;NR=10,5;PP=177,504;QD=5.88253368187;SC=CAACAAGAGGTTGACGGAGCC;SbPval=0.54;Source=Platypus;TC=36;TCF=26;TCR=10;TR=36,23;WE=10665703;WS=10665681;set=Platypus	GT:AF:DP	0/1:1.00:36
chr19	10665695	rs10413128	C	T	816.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.939;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.76;ReadPosRankSum=-1.777;SOR=0.953;set=HC	GT:AD:AF:DP	0/1:12,34:0.74:46
chr19	10665912	rs6146467	C	CCCGCCCTGCCCGCAGCGCACCTGGCT	10493.73	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr19	10665951	rs7251746	G	A	3703.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:116,172:0.60:288
chr19	10666112	rs12459941	G	A	585.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:52,30:0.37:82
chr19	10668383	rs3745256	T	C	10649.77	.	AC=1;AF=0.500;AN=2;DB;DP=721;set=Intersection	GT:AD:AF:DP	0/1:231,482:0.68:713
chr19	10668452	rs3745255	A	G	15444.77	.	AC=2;AF=1.00;AN=2;DB;DP=560;set=Intersection	GT:AD:AF:DP	1/1:0,555:1.00:555
chr19	10668673	rs1982074	A	G	2290.77	.	AC=1;AF=0.500;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	0/1:223,127:0.36:350
chr19	10668953	rs875569	G	A	4542.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:114,198:0.63:312
chr19	10669032	rs892084	T	C	2209.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr19	10670184	rs3826709	C	G	2286.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.428;ClippingRankSum=0.000;DB;DP=434;ExcessHet=3.0103;FS=1.229;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.34;ReadPosRankSum=-1.309;SOR=0.575;set=HC	GT:AD:AF:DP	0/1:299,129:0.30:428
chr19	10670992	rs3745249	C	T	4192.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:111,194:0.64:305
chr19	10671664	rs7259124	T	C	1628.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:171,88:0.34:259
chr19	10672493	rs12984043	C	T	2908.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:76,138:0.64:214
chr19	10673302	rs35523350	C	A	282.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:39,14:0.26:53
chr19	10675564	rs3745247	C	T	576.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:18,28:0.61:46
chr19	10676343	rs3745246	A	T	2261.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:68,96:0.59:164
chr19	10676423	rs3745245	G	A	5143.77	.	AC=1;AF=0.500;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	0/1:164,240:0.59:404
chr19	10676487	rs34864064	G	GCC	9532.73	.	AC=1;AF=0.500;AN=2;DB;DP=684;set=Intersection	GT:AD:AF:DP	0/1:246,314:0.56:560
chr19	10676681	rs3218222	T	C	2069.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:52,78:0.60:130
chr19	10679067	rs33926515	GAGA	G	2399.73	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:38,61:0.62:99
chr19	10679240	rs1968445	C	G	8120.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr19	10685859	rs1560712	G	C	3375.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr19	10687757	rs7252007	T	C	2911.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr19	10689518	rs73018654	G	A	294.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:68,22:0.24:90
chr19	10690557	rs10426276	G	C	3941.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr19	10692000	rs1045361	T	C	1590.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:181,88:0.33:269
chr19	10692117	rs2304161	T	C	4149.77	.	AC=1;AF=0.500;AN=2;DB;DP=508;set=Intersection	GT:AD:AF:DP	0/1:288,209:0.42:497
chr19	10692129	rs2304160	G	A	4023.77	.	AC=1;AF=0.500;AN=2;DB;DP=515;set=Intersection	GT:AD:AF:DP	0/1:297,207:0.41:504
chr19	10694239	rs11085739	A	G	820.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.040;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=6.305;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.620;QD=9.66;ReadPosRankSum=0.717;SOR=0.584;set=HC	GT:AD:AF:DP	0/1:61,24:0.28:85
chr19	10694244	rs11085740	C	T	817.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.331;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=4.633;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.29;ReadPosRankSum=-0.069;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:63,25:0.28:88
chr19	10738639	rs3087969	C	T	4759.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:107,220:0.67:327
chr19	10741622	rs12710257	A	G	975.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:26,44:0.63:70
chr19	10741681	rs60016481	C	CA	1170.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.488;ClippingRankSum=0.000;DB;DP=221;ExcessHet=3.0103;FS=0.693;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=0.000;QD=6.07;ReadPosRankSum=2.274;SOR=0.615;set=HC	GT:AD:AF:DP	0/1:94,99:0.51:193
chr19	10741907	rs12972963	A	G	11640.77	.	AC=1;AF=0.500;AN=2;DB;DP=950;set=Intersection	GT:AD:AF:DP	0/1:398,548:0.58:946
chr19	10742170	rs2288904	A	G	4566.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:98,198:0.67:296
chr19	10742287	rs1560711	C	T	4872.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:120,204:0.63:324
chr19	10742443	rs1560710	C	T	7717.77	.	AC=1;AF=0.500;AN=2;DB;DP=578;set=Intersection	GT:AD:AF:DP	0/1:224,341:0.60:565
chr19	10742463	rs1560709	G	T	7795.77	.	AC=1;AF=0.500;AN=2;DB;DP=567;set=Intersection	GT:AD:AF:DP	0/1:217,338:0.61:555
chr19	10745764	rs2163832	T	C	5851.77	.	AC=1;AF=0.500;AN=2;DB;DP=488;set=Intersection	GT:AD:AF:DP	0/1:211,267:0.56:478
chr19	10748820	rs3859514	T	C	4430.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:97,180:0.65:277
chr19	10751769	rs111569642	G	GA	852.73	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:20,48:0.71:68
chr19	10752968	rs10405617	A	G	4140.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:100,192:0.66:292
chr19	10792948	rs137916035	CAGGG	C	3069.73	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:34,77:0.69:111
chr19	10793749	rs2738039	A	G	905.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:32,41:0.56:73
chr19	10794630	rs2229383	G	T	8903.77	.	AC=1;AF=0.500;AN=2;DB;DP=615;set=Intersection	GT:AD:AF:DP	0/1:208,397:0.66:605
chr19	10794793	rs892087	C	T	1656.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:26,63:0.71:89
chr19	10818092	rs892085	G	A	6316.77	.	AC=1;AF=0.500;AN=2;DB;DP=467;set=Intersection	GT:AD:AF:DP	0/1:184,274:0.60:458
chr19	10824435	rs35323929	CT	C	352.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.615;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=11.487;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.37;ReadPosRankSum=0.049;SOR=0.035;set=HC	GT:AD:AF:DP	0/1:7,27:0.79:34
chr19	10883126	rs3826803	C	G	5319.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:2,194:0.99:196
chr19	10939792	rs2229920	T	C	2170.77	.	AC=1;AF=0.500;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	0/1:280,124:0.31:404
chr19	10961273	rs11085749	G	A	1588.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:155,85:0.35:240
chr19	10969134	rs34464972	G	A	1018.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:90,50:0.36:140
chr19	10970558	rs8100581	A	G	2042.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr19	11019994	rs4804546	T	C	327.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:40,17:0.30:57
chr19	11030664	rs2288843	A	G	1026.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:94,54:0.36:148
chr19	11038843	rs892010	G	C	1664.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr19	11095896	rs78732262	T	C	1173.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:79,54:0.41:133
chr19	11096851	rs111447132	A	G	2324.77	.	AC=1;AF=0.500;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	0/1:265,129:0.33:394
chr19	11097450	rs11669948	C	T	681.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:38,27:0.42:65
chr19	11097822	rs76557781	C	T	262.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:11,12:0.52:23
chr19	11101993	rs17001073	G	A	1763.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:122,89:0.42:211
chr19	11105593	rs17001075	A	G	1917.77	.	AC=1;AF=0.500;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	0/1:234,112:0.32:346
chr19	11105608	rs7935	T	C	2233.77	.	AC=1;AF=0.500;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	0/1:245,127:0.34:372
chr19	11106600	rs11672232	C	T	665.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:65,36:0.36:101
chr19	11106790	rs11669202	T	C	994.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:116,52:0.31:168
chr19	11107085	rs45471592	G	A	2330.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:208,119:0.36:327
chr19	11107133	rs2304087	T	C	2209.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:189,116:0.38:305
chr19	11107295	rs45618443	G	A	756.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:76,41:0.35:117
chr19	11113651	rs17001078	T	C	1156.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:109,64:0.37:173
chr19	11118711	rs17001090	C	T	743.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:53,36:0.40:89
chr19	11136215	rs2075021	C	G	2920.77	.	AC=1;AF=0.500;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	0/1:290,154:0.35:444
chr19	11149129	rs11668058	G	A	265.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:20,13:0.39:33
chr19	11168896	rs8104480	A	G	847.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:86,43:0.33:129
chr19	11221454	rs2738442	T	C	21667.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.834;ClippingRankSum=0.000;DB;DP=672;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=32.93;ReadPosRankSum=0.539;SOR=0.815;set=HC	GT:AD:AF:DP	1/1:2,656:1.00:658
chr19	11221457	rs12710260	G	C	17577.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.167;ClippingRankSum=0.000;DB;DP=676;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.16;ReadPosRankSum=0.702;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:4,668:0.99:672
chr19	11224181	rs1003723	C	T	5547.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr19	11224265	rs5930	A	G	10468.77	.	AC=2;AF=1.00;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	1/1:0,381:1.00:381
chr19	11224491	rs1569372	A	G	4338.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr19	11227480	rs2738447	A	C	917.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr19	11227602	rs688	C	T	3824.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr19	11227814	rs58321173	CT	C	358.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.942;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=0.000;QD=9.20;ReadPosRankSum=-0.334;SOR=0.948;set=HC	GT:AD:AF:DP	0/1:9,30:0.77:39
chr19	11230645	rs2569549	T	C	2680.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr19	11230650	rs145643854	GAAAC	G	4175.73	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr19	11230690	rs116959285	C	G	1556.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:138,77:0.36:215
chr19	11230881	rs5925	T	C	13064.77	.	AC=2;AF=1.00;AN=2;DB;DP=470;set=Intersection	GT:AD:AF:DP	1/1:0,461:1.00:461
chr19	11233941	rs5927	A	G	15923.77	.	AC=2;AF=1.00;AN=2;DB;DP=597;set=Intersection	GT:AD:AF:DP	1/1:0,591:1.00:591
chr19	11238492	rs12459476	A	G	1508.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr19	11238548	rs2569538	A	G	4031.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr19	11241915	rs6413504	A	G	7644.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr19	11242307	rs2738464	G	C	622.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr19	11257756	.	C	CAAA	174.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.208;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=4.481;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.74;ReadPosRankSum=1.508;SOR=0.595;set=HC	GT:AD:AF:DP	0/1:13,7:0.35:20
chr19	11258584	rs58845884	CAAAAAAA	C	2560.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.933;ClippingRankSum=0.000;DB;DP=544;ExcessHet=3.0103;FS=1.786;MLEAC=1;MLEAF=0.500;MQ=61.14;MQRankSum=-3.317;QD=5.50;ReadPosRankSum=1.202;SOR=0.626;set=HC	GT:AD:AF:DP	0/1:336,130:0.28:466
chr19	11258593	rs372171481	AAAAAAAAAAAAAAG	A	2181.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.958;ClippingRankSum=0.000;DB;DP=525;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.19;MQRankSum=5.146;QD=4.57;ReadPosRankSum=0.517;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:286,191:0.40:477
chr19	11266584	rs892114	A	G	1001.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:16,41:0.72:57
chr19	11277232	rs4804573	G	A	4496.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:91,200:0.69:291
chr19	11285390	rs440677	G	A	1042.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:10,41:0.80:51
chr19	11303459	rs35706290	GC	G	5752.73	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:58,146:0.72:204
chr19	11303469	rs7254270	C	G	5994.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:76,163:0.68:239
chr19	11303943	rs3745681	A	G	2001.77	.	AC=1;AF=0.500;AN=2;DB;DP=478;set=Intersection	GT:AD:AF:DP	0/1:349,123:0.26:472
chr19	11310920	rs8101345	C	T	132.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:10,7:0.41:17
chr19	11313126	.	C	T	1898.77	.	AC=1;AF=0.500;AN=2;DP=304;set=Intersection	GT:AD:AF:DP	0/1:196,101:0.34:297
chr19	11313256	rs3745682	G	A	5012.77	.	AC=1;AF=0.500;AN=2;DB;DP=847;set=Intersection	GT:AD:AF:DP	0/1:536,294:0.35:830
chr19	11314807	rs3217390	CTGGGGATGAGGAG	C	1098.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.515;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=7.969;MLEAC=1;MLEAF=0.500;MQ=61.21;MQRankSum=2.781;QD=19.98;ReadPosRankSum=-2.714;SOR=0.132;set=HC	GT:AD:AF:DP	0/1:25,30:0.55:55
chr19	11319491	rs8409	G	A	8567.77	.	AC=1;AF=0.500;AN=2;DB;DP=639;set=Intersection	GT:AD:AF:DP	0/1:234,397:0.63:631
chr19	11324890	rs12609620	T	C	3384.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr19	11325417	rs2163830	A	G	2450.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:2,79:0.98:81
chr19	11325924	rs11673129	C	G	2385.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr19	11326119	rs2304155	A	G	19385.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.158;ClippingRankSum=0.000;DB;DP=446;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=43.86;ReadPosRankSum=0.181;SOR=0.768;set=HC	GT:AD:AF:DP	1/1:2,440:1.00:442
chr19	11326125	rs2304154	C	T	19053.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.004;ClippingRankSum=0.000;DB;DP=432;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=44.52;ReadPosRankSum=-0.211;SOR=0.771;set=HC	GT:AD:AF:DP	1/1:2,426:1.00:428
chr19	11326629	rs10403991	C	A	5341.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr19	11327571	rs4804150	C	T	1705.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:139,88:0.39:227
chr19	11327608	rs4804151	T	C	16527.77	.	AC=2;AF=1.00;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	1/1:0,371:1.00:371
chr19	11327626	rs4804152	A	G	17193.77	.	AC=2;AF=1.00;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	1/1:0,399:1.00:399
chr19	11332505	rs3826815	C	T	3715.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:136,170:0.56:306
chr19	11332570	rs3810307	T	A	5266.77	.	AC=1;AF=0.500;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	0/1:131,236:0.64:367
chr19	11333358	rs12971537	GA	TT	1349.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;JOINED;set=Intersection	GT:AD:AF:DP	0/1:18,35:0.66:53
chr19	11333596	rs3810308	T	C	3346.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:64,150:0.70:214
chr19	11343795	rs17699089	A	G	298.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:4,15:0.79:19
chr19	11346155	rs56322906	G	A	743.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:13,31:0.70:44
chr19	11346252	rs6511729	A	C	2659.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:56,115:0.67:171
chr19	11347493	rs737337	T	C	3981.77	.	AC=1;AF=0.500;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	0/1:157,189:0.55:346
chr19	11347657	rs737338	C	T	1005.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:40,44:0.52:84
chr19	11348521	rs3745683	G	A	1204.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:22,51:0.70:73
chr19	11350340	rs892066	C	G	3728.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:129,168:0.57:297
chr19	11350488	rs2278426	C	T	2811.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:89,128:0.59:217
chr19	11358700	rs4804579	T	C	2670.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:88,126:0.59:214
chr19	11358799	rs12978266	G	A	1057.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:81,55:0.40:136
chr19	11363146	rs8113582	A	T	1150.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:111,64:0.37:175
chr19	11364495	rs7252293	C	T	723.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:17,34:0.67:51
chr19	11406839	rs453766	C	G	1144.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr19	11406952	rs374409	A	G	4087.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr19	11409061	rs377665	C	T	1337.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr19	11409494	rs423304	G	A	4955.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr19	11409684	rs422496	A	G	7939.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:2,292:0.99:294
chr19	11411868	rs420703	C	A	2541.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr19	11417200	rs322151	C	T	1199.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr19	11436302	rs56363898	A	AG	4386.73	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr19	11437480	rs318687	C	G	133.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.508;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=1.706;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.57;ReadPosRankSum=-0.521;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:15,9:0.38:24
chr19	11437566	rs318688	G	A	73.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.068;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.38;ReadPosRankSum=-1.221;SOR=0.250;set=HC	GT:AD:AF:DP	0/1:5,5:0.50:10
chr19	11459668	.	C	T	4396.77	.	AC=1;AF=0.500;AN=2;DP=327;set=Intersection	GT:AD:AF:DP	0/1:137,190:0.58:327
chr19	11473415	rs12983706	C	T	4932.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:1,179:0.99:180
chr19	11510564	.	C	T	979.77	.	AC=1;AF=0.500;AN=2;DP=105;set=Intersection	GT:AD:AF:DP	0/1:57,46:0.45:103
chr19	11517666	rs200124211	A	AT	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.124;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.99;ReadPosRankSum=0.378;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:12,6:0.33:18
chr19	11526759	rs160838	G	A	3273.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr19	11526842	rs201053340	G	T	381.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:11,15:0.58:26
chr19	11529958	rs1549168	C	T	2190.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr19	11534503	rs57892201	TG	T	1806.73	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:16,82:0.84:98
chr19	11541685	rs34095	G	A	11875.77	.	AC=2;AF=1.00;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	1/1:1,452:1.00:453
chr19	11541712	rs34094	T	C	10306.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	1/1:1,379:1.00:380
chr19	11556131	rs62131153	C	T	301.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:38,16:0.30:54
chr19	11558240	rs186375	T	C	10417.77	.	AC=2;AF=1.00;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	1/1:0,394:1.00:394
chr19	11565264	.	TTC	T	56.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.082;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.18;ReadPosRankSum=-0.352;SOR=0.558;set=HC	GT:AD:AF:DP	0/1:41,7:0.15:48
chr19	11624491	rs4804168	C	G	3085.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr19	11660012	rs8100751	T	A	781.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.061;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=17.77;ReadPosRankSum=-0.834;SOR=1.106;set=HC	GT:AD:AF:DP	1/1:5,39:0.89:44
chr19	11687195	rs2229531	C	T	2332.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:74,110:0.60:184
chr19	11687351	rs2305799	C	T	2397.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:50,108:0.68:158
chr19	11687908	rs62638747	G	A	10505.77	.	AC=1;AF=0.500;AN=2;DB;DP=778;set=Intersection	GT:AD:AF:DP	0/1:287,474:0.62:761
chr19	11725761	rs5827132	AT	A	76.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.410;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=1.801;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.56;ReadPosRankSum=1.494;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:18,12:0.40:30
chr19	11878095	rs384148	T	G	1924.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:151,96:0.39:247
chr19	11889347	rs371134	C	T	261.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:16,14:0.47:30
chr19	11891003	rs799193	G	A	9033.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:0,323:1.00:323
chr19	11918093	rs71166630	AT	A	601.73	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:69,39:0.36:108
chr19	11941221	rs424132	T	A	2999.77	.	AC=1;AF=0.500;AN=2;DB;DP=489;set=Intersection	GT:AD:AF:DP	0/1:326,162:0.33:488
chr19	11941256	rs421355	A	G	2455.77	.	AC=1;AF=0.500;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	0/1:294,138:0.32:432
chr19	11941363	rs2545810	G	A	1194.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:113,60:0.35:173
chr19	11941532	rs35392612	C	G	1146.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:119,62:0.34:181
chr19	11941617	rs410885	G	A	349.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:34,17:0.33:51
chr19	11942362	rs427880	A	G	5188.77	.	AC=1;AF=0.500;AN=2;DB;DP=743;set=Intersection	GT:AD:AF:DP	0/1:474,264:0.36:738
chr19	11942615	rs394416	A	C	3861.77	.	AC=1;AF=0.500;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	0/1:291,179:0.38:470
chr19	11942771	rs436411	G	A	4287.77	.	AC=1;AF=0.500;AN=2;DB;DP=604;set=Intersection	GT:AD:AF:DP	0/1:364,229:0.39:593
chr19	11943697	rs400106	G	A	11251.77	.	AC=2;AF=1.00;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	1/1:0,416:1.00:416
chr19	11943713	rs56167415	G	A	2832.77	.	AC=1;AF=0.500;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	0/1:234,146:0.38:380
chr19	11943823	rs375049	G	A	1673.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:133,83:0.38:216
chr19	11943852	rs3745669	T	C	1894.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:134,91:0.40:225
chr19	11977572	rs11671596	G	C	60.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.541;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.56;ReadPosRankSum=-1.526;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:32,7:0.18:39
chr19	11979164	rs10500209	T	C	3969.77	.	AC=1;AF=0.500;AN=2;DB;DP=674;set=Intersection	GT:AD:AF:DP	0/1:440,221:0.33:661
chr19	12024208	rs34363657	C	CT	151.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.390;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=3.584;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.53;ReadPosRankSum=0.434;SOR=0.209;set=HC	GT:AD:AF:DP	0/1:28,15:0.35:43
chr19	12058536	rs4804175	C	T	628.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:19,27:0.59:46
chr19	12157334	rs4804176	T	G	3639.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr19	12191161	.	CA	C	164.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.415;ClippingRankSum=0.000;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.137;QD=3.00;ReadPosRankSum=1.180;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:29,26:0.47:55
chr19	12204632	rs199664949	G	GT	103.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.798;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.14;ReadPosRankSum=0.077;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:72,19:0.21:91
chr19	12222381	rs1866382	C	G	4585.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr19	12256358	rs12972621	T	G	16809.77	.	AC=2;AF=1.00;AN=2;DB;DP=625;set=Intersection	GT:AD:AF:DP	1/1:3,604:1.00:607
chr19	12494612	rs10418011	T	C	753.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.547;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=2.391;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.93;ReadPosRankSum=-0.778;SOR=1.026;set=HC	GT:AD:AF:DP	0/1:69,26:0.27:95
chr19	12494621	rs10412448	A	G	656.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.862;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.42;ReadPosRankSum=0.494;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:59,19:0.24:78
chr19	12502457	rs4804669	A	G	4183.77	.	AC=1;AF=0.500;AN=2;DB;DP=737;set=Intersection	GT:AD:AF:DP	0/1:492,238:0.33:730
chr19	12541532	rs10422063	C	A	26649.77	.	AC=2;AF=1.00;AN=2;DB;DP=625;set=Intersection	GT:AD:AF:DP	1/1:0,619:1.00:619
chr19	12541547	rs10402252	T	G	27371.77	.	AC=2;AF=1.00;AN=2;DB;DP=643;set=Intersection	GT:AD:AF:DP	1/1:1,637:1.00:638
chr19	12542772	rs1134389	C	T	7838.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr19	12542848	rs4804692	G	C	2680.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.86;QD=43.24;SOR=6.869;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr19	12542851	rs4804693	AT	GC	2648.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=39.85;QD=46.47;SOR=6.701;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr19	12542891	rs140908232	G	A	846.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.96;QD=32.57;SOR=2.670;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr19	12542904	rs78266625	C	T	639.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.39;QD=31.99;SOR=1.721;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr19	12543251	rs138584869	A	C	849.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.242;ClippingRankSum=0.000;DB;DP=293;ExcessHet=3.0103;FS=7.543;MLEAC=1;MLEAF=0.500;MQ=54.68;MQRankSum=-8.662;QD=2.91;ReadPosRankSum=-2.932;SOR=1.204;set=HC	GT:AD:AF:DP	0/1:232,60:0.21:292
chr19	12543333	rs3979432	C	T	2095.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr19	12551616	rs35084134	C	G	4977.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:2,153:0.99:155
chr19	12551715	rs11881297	A	C	17769.77	.	AC=2;AF=1.00;AN=2;DB;DP=673;set=Intersection	GT:AD:AF:DP	1/1:1,659:1.00:660
chr19	12576049	rs7259240	G	A	10309.77	.	AC=2;AF=1.00;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	1/1:0,384:1.00:384
chr19	12576573	rs10404972	G	A	822.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr19	12659875	rs146138143	C	CCATA	636.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr19	12661335	rs2861411	C	T	103.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr19	12662318	rs79749579	G	GC	12089.73	.	AC=2;AF=1.00;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	1/1:0,374:1.00:374
chr19	12692001	rs3745651	G	A	10424.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	1/1:0,380:1.00:380
chr19	12694089	rs12461643	T	G	3365.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr19	12707904	rs1864082	T	C	4649.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr19	12707978	rs1864081	G	A	10162.77	.	AC=2;AF=1.00;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	1/1:5,385:0.99:390
chr19	12720631	rs8100964	C	T	448.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr19	12734666	rs372233695	TTTC	T	658.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.94;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr19	12760287	rs12984441	A	C	765.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.36;SOR=1.528;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr19	12760664	rs3815914	T	C	764.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.77;QD=28.32;SOR=1.101;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr19	12763350	rs71168621	C	CT	680	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.028;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=1.749;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=0.000;QD=11.53;ReadPosRankSum=0.393;SOR=1.426;set=HC	GT:AD:AF:DP	0/1:13,46:0.78:59
chr19	12768391	rs73002392	G	A	4610.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:2,174:0.99:176
chr19	12768843	rs34324185	G	T	612.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:73,38:0.34:111
chr19	12768948	rs35836657	T	C	3205.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:82,140:0.63:222
chr19	12772090	rs1133330	C	T	833.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:92,43:0.32:135
chr19	12772165	rs1054487	G	A	1072.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:165,69:0.29:234
chr19	12772263	rs2303731	T	C	733.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.282;ClippingRankSum=0.000;DB;DP=199;ExcessHet=3.0103;FS=1.309;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.74;ReadPosRankSum=0.530;SOR=0.860;set=HC	GT:AD:AF:DP	0/1:147,49:0.25:196
chr19	12774208	rs1054486	G	C	2627.77	.	AC=1;AF=0.500;AN=2;DB;DP=500;set=Intersection	GT:AD:AF:DP	0/1:345,153:0.31:498
chr19	12787002	rs34820996	G	GAGAC	452.73	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:32,14:0.30:46
chr19	12876278	rs1205169	C	A	6675.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr19	12876964	rs897804	G	C	6221.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr19	12917472	rs1046220	T	C	3319.73	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:93,151:0.62:244
chr19	12944663	.	AGCC	A	118.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.942;ClippingRankSum=0.000;DP=31;ExcessHet=3.0103;FS=2.399;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.16;ReadPosRankSum=0.037;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:18,5:0.22:23
chr19	12996733	rs182276666	G	A	2114.77	.	AC=1;AF=0.500;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	0/1:189,115:0.38:304
chr19	13029188	rs2965214	G	A	2292.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr19	13030939	.	A	ACACACACACACACAC	2066.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.42;QD=57.41;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr19	13030940	rs8104603	T	A	2124.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr19	13031210	rs2967897	T	C	2126.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr19	13039284	rs2293683	A	G	10237.77	.	AC=2;AF=1.00;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	1/1:6,396:0.99:402
chr19	13044544	rs2974750	C	A	1445.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.204;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=13.238;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=16.06;ReadPosRankSum=0.114;SOR=2.644;set=HC	GT:AD:AF:DP	1/1:2,88:0.98:90
chr19	13051227	.	GC	AT	6549.77	.	AC=1;AF=0.500;AN=2;DP=297;JOINED;set=Intersection	GT:AD:AF:DP	0/1:126,167:0.57:293
chr19	13212025	rs12151248	C	T	159.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:13,9:0.41:22
chr19	13220676	rs10414282	G	A	9618.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:1,339:1.00:340
chr19	13220703	rs35601737	C	G	4460.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:113,194:0.63:307
chr19	13226433	rs202088629	GC	G	465.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.027;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=3.392;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.782;QD=4.95;ReadPosRankSum=0.258;SOR=1.106;set=HC	GT:AD:AF:DP	0/1:71,23:0.24:94
chr19	13249244	rs8112067	A	G	3593.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:1,120:0.99:121
chr19	13255536	rs2304095	T	C	10632.77	.	AC=2;AF=1.00;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	1/1:0,386:1.00:386
chr19	13260240	.	A	AAAG,AAAAG	3093.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=64.21;QD=56.25;SOR=1.877;set=HC	GT:AD:AF:DP	1/2:0,23,32:0.42,0.58:55
chr19	13318811	rs147221323	C	T	601.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:75,39:0.34:114
chr19	13319693	rs16051	A	G	4359.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.758;ClippingRankSum=0.000;DB;DP=233;ExcessHet=3.0103;FS=7.712;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.95;ReadPosRankSum=-0.632;SOR=2.921;set=HC	GT:AD:AF:DP	1/1:12,178:0.94:190
chr19	13319989	rs10413221	T	C	2981.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr19	13320002	rs2304093	C	G	3121.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr19	13322822	rs3217380	AG	A	1801.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr19	13323124	rs16048	T	G	5155.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:1,177:0.99:178
chr19	13335300	.	CAA	C	649.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.290;ClippingRankSum=-0.000;DP=36;ExcessHet=3.0103;FS=7.160;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=19.69;ReadPosRankSum=0.555;SOR=3.737;set=HC	GT:AD:AF:DP	1/1:7,26:0.79:33
chr19	13335432	rs3816027	G	A	6117.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr19	13338180	rs143245670	AAAG	A	2869.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.354;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.98;MQRankSum=0.294;QD=17.71;ReadPosRankSum=-1.102;SOR=0.717;set=HC	GT:AD:AF:DP	1/1:11,151:0.93:162
chr19	13339417	rs36088930	GAGAT	G	857.73	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:9,31:0.78:40
chr19	13355900	rs16039	T	G	1721.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr19	13356150	rs16035	T	G	6435.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr19	13364012	rs8103699	C	T	1362.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr19	13372214	.	CT	C	365.73	.	AC=1;AF=0.500;AN=2;DP=50;set=Intersection	GT:AD:AF:DP	0/1:35,15:0.30:50
chr19	13373477	rs16031	A	G	1068.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr19	13443770	rs16008	T	C	1250.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:164,74:0.31:238
chr19	13445144	rs2306348	C	T	203.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.943;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=6.758;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.61;ReadPosRankSum=1.249;SOR=1.739;set=HC	GT:AD:AF:DP	0/1:64,14:0.18:78
chr19	13445208	rs2248069	C	T	616.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=2.145;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.45;ReadPosRankSum=-1.317;SOR=0.924;set=HC	GT:AD:AF:DP	0/1:131,48:0.27:179
chr19	13445407	rs138143360	TTGTG	T	341.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.328;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=3.699;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.49;ReadPosRankSum=0.751;SOR=1.714;set=HC	GT:AD:AF:DP	0/1:23,13:0.36:36
chr19	13616693	rs16003	C	T	4939.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.44;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,180:1.00:180
chr19	13865070	rs378189	C	T	4058.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr19	13866793	rs392725	A	G	878.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr19	13866866	rs417186	T	G	3795.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr19	13866957	rs2910225	T	C	12204.77	.	AC=2;AF=1.00;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	1/1:0,453:1.00:453
chr19	13868117	rs693151	A	G	2267.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr19	13868669	rs6511886	G	A	5281.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr19	13870153	rs371671	C	A	1776.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr19	13875258	.	C	G	310	.	AC=2;AF=1.00;AN=2;BRF=0.49;FR=1.0000;HP=1;HapScore=2;MGOF=40;MMLQ=24;MQ=57.0;NF=13;NR=3;PP=310;QD=21.5482007842;SC=TGGAATCCGCCTCCTGGGAAC;SbPval=0.59;Source=Platypus;TC=16;TCF=13;TCR=3;TR=16;WE=13875266;WS=13875256;set=Platypus	GT:AD:AF:DP	1/1:0,16:1.00:16
chr19	13875626	rs2922288	T	C	909.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr19	13879622	rs346152	T	C	6829.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr19	13883099	rs1469071	A	G	13329.77	.	AC=2;AF=1.00;AN=2;DB;DP=487;set=Intersection	GT:AD:AF:DP	1/1:0,483:1.00:483
chr19	13899041	rs71170566	CTTTT	C	464.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.823;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=6.094;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.60;ReadPosRankSum=-0.800;SOR=1.203;set=HC	GT:AD:AF:DP	0/1:11,17:0.61:28
chr19	13900059	rs62111900	A	G	1186.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr19	14038791	rs2305777	C	T	1629.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:179,95:0.35:274
chr19	14045311	rs369502229	AGT	A	36.73	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:17,5:0.23:22
chr19	14065488	rs1056143	A	G	5397.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr19	14070706	rs141180609	A	AGGTGGGCCCAGGGCGGGCAG	1487.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.764;ClippingRankSum=0.000;DB;DP=326;ExcessHet=3.0103;FS=16.658;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.76;ReadPosRankSum=1.093;SOR=2.761;set=HC	GT:AD:AF:DP	0/1:182,38:0.17:220
chr19	14083761	rs2305780	T	C	1158.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:75,59:0.44:134
chr19	14091543	rs146048336	T	TGCATCCTCTCTGGGGTGGGCTC	532.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.882;ClippingRankSum=0.000;DB;DP=190;ExcessHet=3.0103;FS=6.354;MLEAC=1;MLEAF=0.500;MQ=62.02;MQRankSum=8.633;QD=3.73;ReadPosRankSum=2.529;SOR=1.509;set=HC	GT:AD:AF:DP	0/1:122,21:0.15:143
chr19	14139004	rs1982632	A	G	274.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:41,17:0.29:58
chr19	14141480	rs4263049	A	G	1711.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:164,97:0.37:261
chr19	14142616	rs6511905	C	G	263.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:22,11:0.33:33
chr19	14142705	rs113593439	C	T	1114.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:107,57:0.35:164
chr19	14143446	.	CAA	C	54.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.631;ClippingRankSum=-0.000;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.21;ReadPosRankSum=0.355;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:8,5:0.38:13
chr19	14150303	rs75852614	C	T	2193.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:183,110:0.38:293
chr19	14157478	rs75452068	C	T	410.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:37,19:0.34:56
chr19	14161547	rs10424865	A	G	1269.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:107,69:0.39:176
chr19	14161745	rs10404803	T	G	306.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:27,17:0.39:44
chr19	14162347	rs10404921	C	G	724.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:52,35:0.40:87
chr19	14162676	rs2306190	A	C	4346.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:1,164:0.99:165
chr19	14184713	rs35666756	C	CG	17462.73	.	AC=2;AF=1.00;AN=2;DB;DP=546;set=Intersection	GT:AD:AF:DP	1/1:3,524:0.99:527
chr19	14185226	rs7258963	T	C	2685.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr19	14194458	rs35357458	C	A	12476.77	.	AC=2;AF=1.00;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	1/1:2,456:1.00:458
chr19	14200109	rs8062	T	C	2166.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:49,92:0.65:141
chr19	14208782	rs34415768	C	T	1143.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:31,44:0.59:75
chr19	14231243	rs3745464	C	T	800.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:17,34:0.67:51
chr19	14231325	rs8102267	C	G	5714.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.145;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=1.057;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.74;ReadPosRankSum=0.139;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:91,140:0.61:231
chr19	14231330	rs8102698	A	G	5881.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.558;ClippingRankSum=0.000;DB;DP=258;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.25;ReadPosRankSum=0.741;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:99,154:0.61:253
chr19	14237119	rs376176283	AT	A	50.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.806;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.99;ReadPosRankSum=0.811;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:38,13:0.25:51
chr19	14294288	rs61051191	GC	G	6315.73	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr19	14301821	rs35845368	A	C	428.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.799;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.53;MQRankSum=-0.185;QD=13.40;ReadPosRankSum=-1.943;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:13,19:0.59:32
chr19	14492265	rs2302997	T	C	4596.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.718;ClippingRankSum=0.000;DB;DP=332;ExcessHet=3.0103;FS=1.426;MLEAC=1;MLEAF=0.500;MQ=59.18;MQRankSum=-5.891;QD=14.06;ReadPosRankSum=-0.863;SOR=0.595;set=HC	GT:AD:AF:DP	0/1:203,124:0.38:327
chr19	14492272	rs2302996	T	C	4717.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.700;ClippingRankSum=0.000;DB;DP=364;ExcessHet=3.0103;FS=1.344;MLEAC=1;MLEAF=0.500;MQ=59.25;MQRankSum=-5.974;QD=13.18;ReadPosRankSum=-0.292;SOR=0.596;set=HC	GT:AD:AF:DP	0/1:225,133:0.37:358
chr19	14499357	rs2302094	T	A	2152.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.77;QD=30.75;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr19	14499410	rs2302092	G	C	2540.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr19	14507102	rs200115962	T	C	293.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.614;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.64;MQRankSum=-10.124;QD=2.80;ReadPosRankSum=-3.345;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:85,20:0.19:105
chr19	14507128	rs75902260	C	T	707.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.146;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=2.694;MLEAC=1;MLEAF=0.500;MQ=58.16;MQRankSum=-8.690;QD=3.89;ReadPosRankSum=-1.063;SOR=0.962;set=HC	GT:AD:AF:DP	0/1:140,42:0.23:182
chr19	14507307	rs62122581	C	T	4653.77	.	AC=1;AF=0.500;AN=2;DB;DP=841;set=Intersection	GT:AD:AF:DP	0/1:567,267:0.32:834
chr19	14507342	rs62122582	G	T	3843.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.270;ClippingRankSum=0.000;DB;DP=577;ExcessHet=3.0103;FS=4.053;MLEAC=1;MLEAF=0.500;MQ=58.32;MQRankSum=-15.580;QD=6.71;ReadPosRankSum=-5.390;SOR=1.056;set=HC	GT:AD:AF:DP	0/1:446,127:0.22:573
chr19	14507345	rs62122583	C	G	3785.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.224;ClippingRankSum=0.000;DB;DP=561;ExcessHet=3.0103;FS=3.204;MLEAC=1;MLEAF=0.500;MQ=58.28;MQRankSum=-15.848;QD=6.78;ReadPosRankSum=-5.253;SOR=1.027;set=HC	GT:AD:AF:DP	0/1:439,119:0.21:558
chr19	14507373	.	G	A	329.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.753;ClippingRankSum=0.000;DP=304;ExcessHet=3.0103;FS=45.206;MLEAC=1;MLEAF=0.500;MQ=58.08;MQRankSum=-16.812;QD=1.09;ReadPosRankSum=-4.471;SOR=3.954;set=HC	GT:AD:AF:DP	0/1:265,38:0.13:303
chr19	14508223	rs10412108	A	G	816.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:72,37:0.34:109
chr19	14508385	rs10410071	G	A	329.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:45,19:0.30:64
chr19	14508964	rs7508244	T	C	2387.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:209,131:0.39:340
chr19	14522434	rs55968966	GCCTTA	G	23423.73	.	AC=2;AF=1.00;AN=2;DB;DP=551;set=Intersection	GT:AD:AF:DP	1/1:0,524:1.00:524
chr19	14561640	rs181455825	G	A	537.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:7,22:0.76:29
chr19	14561722	rs8107892	A	G	2029.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr19	14562977	rs12973696	T	C	461.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:16,22:0.58:38
chr19	14580635	rs74889788	G	A	5708.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.002;ClippingRankSum=0.000;DB;DP=464;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.60;ReadPosRankSum=-3.825;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:295,158:0.35:453
chr19	14580638	rs78858120	T	C	5754.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.346;ClippingRankSum=0.000;DB;DP=463;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.76;ReadPosRankSum=-3.725;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:295,156:0.35:451
chr19	14580662	rs74564226	G	A	4995.77	.	AC=1;AF=0.500;AN=2;DB;DP=480;set=Intersection	GT:AD:AF:DP	0/1:318,150:0.32:468
chr19	14580865	rs79441155	G	T	826.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:120,46:0.28:166
chr19	14581063	rs1042728	A	G	2161.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:165,111:0.40:276
chr19	14581756	rs59891980	TGCCTCAAGGGCCTCGTTGC	T	1233.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.108;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.88;MQRankSum=5.699;QD=11.64;ReadPosRankSum=-1.653;SOR=0.537;set=HC	GT:AD:AF:DP	0/1:71,35:0.33:106
chr19	14590142	rs138580153	TGACAAGAGTGA	T	172.73	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:14,6:0.30:20
chr19	14590164	.	C	CA	97.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.446;ClippingRankSum=0.000;DP=22;ExcessHet=3.0103;FS=2.350;MLEAC=1;MLEAF=0.500;MQ=59.24;MQRankSum=0.000;QD=5.14;ReadPosRankSum=-0.491;SOR=0.250;set=HC	GT:AD:AF:DP	0/1:10,9:0.47:19
chr19	14590279	rs45458894	G	C	606.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:83,36:0.30:119
chr19	14590433	rs45621333	A	G	302.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.888;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=2.054;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.26;ReadPosRankSum=-0.402;SOR=0.470;set=HC	GT:AD:AF:DP	0/1:71,22:0.24:93
chr19	14593929	rs117714987	G	A	483.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:30,23:0.43:53
chr19	14627050	rs4926222	G	A	4825.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr19	14627215	rs8112776	T	C	1190.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:139,70:0.33:209
chr19	14629150	rs3962158	G	A	995.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:25,41:0.62:66
chr19	14655865	rs7252966	T	C	3540.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:74,154:0.68:228
chr19	14674235	rs891089	C	T	1089.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:13,42:0.76:55
chr19	14719854	rs10404194	T	C	1294.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:31,54:0.64:85
chr19	14720026	rs11085899	C	T	2002.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:74,94:0.56:168
chr19	14721019	rs6511944	C	T	1455.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:37,62:0.63:99
chr19	14736288	rs34381727	C	G	1470.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:126,71:0.36:197
chr19	14740824	rs77548886	A	AG	689.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.459;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=5.218;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.588;QD=8.02;ReadPosRankSum=1.842;SOR=0.254;set=HC	GT:AD:AF:DP	0/1:61,25:0.29:86
chr19	14741065	rs62124014	G	A	473.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:43,25:0.37:68
chr19	14743902	rs2045912	C	T	2090.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:32,85:0.73:117
chr19	14744032	rs732722	G	A	357.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:26,18:0.41:44
chr19	14744181	rs899217	T	A	1026.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr19	14744311	rs62124017	G	A	134.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:19,8:0.30:27
chr19	14752325	rs8102646	C	T	11957.77	.	AC=2;AF=1.00;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	1/1:0,426:1.00:426
chr19	14754831	rs61276204	GTT	G	430.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:1,17:0.94:18
chr19	14769339	rs4606855	C	G	3956.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr19	14779550	rs4239642	C	A	1228.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr19	14827076	.	C	CT	105.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.219;ClippingRankSum=0.000;DP=301;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.46;ReadPosRankSum=2.906;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:194,38:0.16:232
chr19	14846897	rs1859257	T	A	2981.77	.	AC=1;AF=0.500;AN=2;DB;DP=487;set=Intersection	GT:AD:AF:DP	0/1:306,166:0.35:472
chr19	14847013	rs1859258	G	C	2644.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.080;ClippingRankSum=0.000;DB;DP=559;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.84;ReadPosRankSum=-1.289;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:379,168:0.31:547
chr19	14856949	rs2732788	C	A	95.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:19,6:0.24:25
chr19	14857791	rs34186967	T	TA	918.73	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:77,54:0.41:131
chr19	14862430	rs2524383	C	G	4719.77	.	AC=1;AF=0.500;AN=2;DB;DP=617;set=Intersection	GT:AD:AF:DP	0/1:371,243:0.40:614
chr19	14862555	rs2524384	T	A	1566.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:171,80:0.32:251
chr19	14863150	rs62122600	G	A	3122.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:92,133:0.59:225
chr19	14866974	rs2253472	T	C	2059.77	.	AC=1;AF=0.500;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	0/1:244,114:0.32:358
chr19	14867186	rs2524386	G	A	1028.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:92,49:0.35:141
chr19	14875201	rs7253782	G	T	2385.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:43,99:0.70:142
chr19	14875388	rs35612307	G	A	1702.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:37,72:0.66:109
chr19	14877630	rs6511971	T	A	1380.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:19,52:0.73:71
chr19	14877799	rs12976472	G	C	1694.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.291;ClippingRankSum=0.000;DB;DP=280;ExcessHet=3.0103;FS=18.546;MLEAC=1;MLEAF=0.500;MQ=57.81;MQRankSum=-12.741;QD=6.05;ReadPosRankSum=-5.458;SOR=1.499;set=HC	GT:AD:AF:DP	0/1:218,62:0.22:280
chr19	14877806	rs12976475	G	A	1482.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.717;ClippingRankSum=0.000;DB;DP=259;ExcessHet=3.0103;FS=21.628;MLEAC=1;MLEAF=0.500;MQ=57.77;MQRankSum=-13.738;QD=5.72;ReadPosRankSum=-6.586;SOR=1.725;set=HC	GT:AD:AF:DP	0/1:210,49:0.19:259
chr19	14877816	rs12985807	T	A	671.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.728;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=26.053;MLEAC=1;MLEAF=0.500;MQ=57.90;MQRankSum=-15.298;QD=2.85;ReadPosRankSum=-5.753;SOR=2.539;set=HC	GT:AD:AF:DP	0/1:207,29:0.12:236
chr19	14877820	rs12976493	G	A	482.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.335;ClippingRankSum=0.000;DB;DP=232;ExcessHet=3.0103;FS=31.452;MLEAC=1;MLEAF=0.500;MQ=58.07;MQRankSum=-15.176;QD=2.08;ReadPosRankSum=-5.924;SOR=3.098;set=HC	GT:AD:AF:DP	0/1:206,26:0.11:232
chr19	14884946	rs2302090	A	G	992.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:36,39:0.52:75
chr19	14887596	rs2286362	A	G	9287.77	.	AC=1;AF=0.500;AN=2;DB;DP=674;set=Intersection	GT:AD:AF:DP	0/1:235,427:0.65:662
chr19	14910438	rs10415312	C	T	20314.77	.	AC=2;AF=1.00;AN=2;DB;DP=537;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.19;SOR=0.771;set=HC	GT:AD:AF:DP	1/1:0,532:1.00:532
chr19	14910438	.	CGG	TGA,TGG	2944	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.46;FR=0.5000,0.5000;HP=3;HapScore=1;MGOF=3;MMLQ=26;MQ=59.98;NF=113,173;NR=120,186;PP=2944,1764;QD=20;SC=ATTTCCATTTCGGTGCAGAAG;SbPval=0.52;Source=Platypus;TC=363;TCF=174;TCR=189;TR=233,359;WE=14910448;WS=14910403;set=Platypus	GT:AF:DP	0/1:0.64:363
chr19	14910440	rs62122646	G	A	7405.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.001;ClippingRankSum=0.000;DB;DP=530;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.08;ReadPosRankSum=1.134;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:192,334:0.63:526
chr19	14910573	rs10415562	C	T	9752.77	.	AC=2;AF=1.00;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	1/1:0,357:1.00:357
chr19	14938421	rs62122652	C	G	6989.77	.	AC=1;AF=0.500;AN=2;DB;DP=522;set=Intersection	GT:AD:AF:DP	0/1:209,309:0.60:518
chr19	14938616	rs2190686	T	C	2539.77	.	AC=1;AF=0.500;AN=2;DB;DP=439;set=Intersection	GT:AD:AF:DP	0/1:296,134:0.31:430
chr19	14952017	rs11880955	T	A	2934.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:85,121:0.59:206
chr19	14952238	rs12972670	A	G	6121.77	.	AC=1;AF=0.500;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	0/1:183,282:0.61:465
chr19	14952560	rs12985894	G	T	4572.77	.	AC=1;AF=0.500;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	0/1:127,210:0.62:337
chr19	14952706	rs141373725	CAG	C	619.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.036;ClippingRankSum=0.000;DB;DP=233;ExcessHet=3.0103;FS=1.718;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.875;QD=4.00;ReadPosRankSum=-0.967;SOR=0.945;set=HC	GT:AD:AF:DP	0/1:115,40:0.26:155
chr19	14974930	rs10407452	G	A	5447.77	.	AC=1;AF=0.500;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	0/1:131,246:0.65:377
chr19	14975368	rs10415965	A	G	5176.77	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:130,232:0.64:362
chr19	14975471	rs11085912	C	T	3049.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:58,129:0.69:187
chr19	14991133	rs139042522	TAGA	T	1514.73	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:25,39:0.61:64
chr19	14992042	rs10405136	A	G	4142.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:98,179:0.65:277
chr19	14992178	rs143236373	CTATT	C	2890.73	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:36,74:0.67:110
chr19	15052983	rs3044711	T	TATC	21960.73	.	AC=2;AF=1.00;AN=2;DB;DP=532;set=Intersection	GT:AD:AF:DP	1/1:0,490:1.00:490
chr19	15060983	rs5827264	TG	T	215.73	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:17,11:0.39:28
chr19	15064065	rs10417793	A	G	613.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr19	15064858	rs2269913	A	C	1687.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:2,61:0.97:63
chr19	15065169	rs757465	T	C	1186.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.07;SOR=2.012;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr19	15065169	.	TGG	CGG,CGT	479	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.32;FR=0.5000,0.5000;HP=4;HapScore=2;MGOF=3;MMLQ=24;MQ=60.0;NF=7,2;NR=25,6;PP=479,105;QD=16.0553503921;SC=GGACTGAGGATGGGGCGTGGC;SbPval=0.52;Source=Platypus;TC=33;TCF=7;TCR=26;TR=32,8;WE=15065179;WS=15065159;set=Platypus	GT:AF:DP	0/1:0.97:33
chr19	15065171	rs2269914	G	T	207.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.092;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=3.430;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.77;ReadPosRankSum=0.250;SOR=0.273;set=HC	GT:AD:AF:DP	0/1:25,11:0.31:36
chr19	15072787	rs3827000	A	T	2841.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:1,99:0.99:100
chr19	15075020	rs10407669	A	G	2320.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr19	15075266	rs3803927	T	C	2929.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:88,137:0.61:225
chr19	15078986	rs2097836	CG	TA	274.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;JOINED;set=Intersection	GT:AD:AF:DP	0/1:10,8:0.44:18
chr19	15079078	rs73011399	T	C	1457.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.969;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=1.697;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.02;ReadPosRankSum=-2.186;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:38,66:0.63:104
chr19	15079104	rs11668879	G	A	1023.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:99,55:0.36:154
chr19	15083485	rs3746294	T	C	7257.77	.	AC=1;AF=0.500;AN=2;DB;DP=546;set=Intersection	GT:AD:AF:DP	0/1:210,335:0.61:545
chr19	15083693	rs3746295	C	A	3251.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr19	15121210	rs55780375	C	T	2377.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:24,58:0.71:82
chr19	15121223	rs56344453	A	G	2622.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:27,69:0.72:96
chr19	15121307	rs16980212	C	G	2884.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:86,131:0.60:217
chr19	15124474	rs11085935	C	T	1316.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:38,60:0.61:98
chr19	15124694	rs11085936	A	T	422.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:5,17:0.77:22
chr19	15131213	rs7248834	G	T	1413.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr19	15131261	rs4405675	C	T	745.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:56,38:0.40:94
chr19	15132545	rs736737	T	C	3543.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:95,149:0.61:244
chr19	15132574	rs757463	C	G	6946.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr19	15133762	rs8111625	G	C	6544.77	.	AC=1;AF=0.500;AN=2;DB;DP=615;set=Intersection	GT:AD:AF:DP	0/1:407,201:0.33:608
chr19	15133787	rs10424547	C	A	6656.77	.	AC=1;AF=0.500;AN=2;DB;DP=635;set=Intersection	GT:AD:AF:DP	0/1:423,206:0.33:629
chr19	15133926	rs8112667	C	A	888.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:82,44:0.35:126
chr19	15162916	rs2239364	T	A	672.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:11,28:0.72:39
chr19	15166162	rs3181163	T	C	1299.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:113,63:0.36:176
chr19	15198263	rs8105277	A	G	21219.77	.	AC=2;AF=1.00;AN=2;DB;DP=774;set=Intersection	GT:AD:AF:DP	1/1:0,766:1.00:766
chr19	15198292	rs8104843	C	G	22743.77	.	AC=2;AF=1.00;AN=2;DB;DP=866;set=Intersection	GT:AD:AF:DP	1/1:3,854:1.00:857
chr19	15198507	rs8108721	T	C	17578.77	.	AC=2;AF=1.00;AN=2;DB;DP=625;set=Intersection	GT:AD:AF:DP	1/1:0,617:1.00:617
chr19	15198631	rs8105737	A	C	10227.77	.	AC=2;AF=1.00;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	1/1:2,354:0.99:356
chr19	15198764	rs12975625	T	C	10079.77	.	AC=2;AF=1.00;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	1/1:2,366:0.99:368
chr19	15223466	rs4808977	A	G	2194.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr19	15224225	rs8109071	G	C	2801.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr19	15224265	rs8109089	G	C	4822.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr19	15226611	rs2074261	C	A	10739.77	.	AC=2;AF=1.00;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	1/1:0,378:1.00:378
chr19	15226970	rs2074262	G	A	17590.77	.	AC=2;AF=1.00;AN=2;DB;DP=617;set=Intersection	GT:AD:AF:DP	1/1:0,613:1.00:613
chr19	15227030	rs2074263	G	A	22637.77	.	AC=2;AF=1.00;AN=2;DB;DP=839;set=Intersection	GT:AD:AF:DP	1/1:0,833:1.00:833
chr19	15227798	rs12972958	G	C	6850.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr19	15233581	rs2074265	C	A	4120.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:87,178:0.67:265
chr19	15233631	rs2074266	G	A	5112.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:109,223:0.67:332
chr19	15235932	rs4141356	G	A	538.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:8,24:0.75:32
chr19	15271771	rs1044009	G	A	4113.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr19	15273221	rs757472	T	C	1620.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.02;SOR=1.371;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr19	15273231	rs4809028	A	G	1669.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.81;SOR=1.387;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr19	15273248	rs4809029	A	C	1351.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr19	15273381	rs4809030	A	G	2651.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr19	15276007	rs2886698	C	A	1601.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr19	15276055	rs2074617	C	G	3032.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr19	15276143	rs2074618	C	T	8298.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chr19	15276919	rs2074619	G	A	11903.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.93;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,271:1.00:271
chr19	15276923	rs10416777	C	T	11821.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.78;SOR=1.371;set=HC	GT:AD:AF:DP	1/1:0,264:1.00:264
chr19	15277006	rs45591935	T	C	2293.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.48;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr19	15277009	rs62113791	CA	TG	2138.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.51;SOR=4.362;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr19	15277938	rs1548554	C	T	4436.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr19	15278057	rs1548555	A	G	8230.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chr19	15281386	rs2074620	C	A	9121.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,325:1.00:325
chr19	15281459	rs56277836	C	G	2651.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:33,110:0.77:143
chr19	15285052	rs1044006	T	C	2503.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr19	15285272	rs10422818	T	C	4830.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr19	15285382	rs71168591	ATTTT	A,AT	1046.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=36.09;SOR=2.546;set=HC	GT:AD:AF:DP	1/2:0,18,11:0.62,0.38:29
chr19	15289613	rs11670823	A	T	1672.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr19	15290125	rs56061231	G	A	7513.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr19	15290412	rs2074621	G	A	5013.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr19	15292088	rs7257550	G	C	303.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr19	15292366	rs11669982	C	T	1940.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr19	15292437	rs1043997	T	C	4634.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr19	15294991	rs2074616	C	T	2274.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr19	15295134	rs1043996	G	A	7629.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr19	15300069	rs10423702	T	C	16291.77	.	AC=2;AF=1.00;AN=2;DB;DP=625;set=Intersection	GT:AD:AF:DP	1/1:2,617:1.00:619
chr19	15300136	rs61749020	A	G	3569.77	.	AC=1;AF=0.500;AN=2;DB;DP=670;set=Intersection	GT:AD:AF:DP	0/1:452,204:0.31:656
chr19	15302844	rs1043994	T	C	9394.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:0,344:1.00:344
chr19	15350594	rs11669901	G	A	1151.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:174,74:0.30:248
chr19	15366010	rs34027119	A	AG	233.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.676;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.95;MQRankSum=0.000;QD=7.08;ReadPosRankSum=0.767;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:18,15:0.45:33
chr19	15378434	rs139141985	GCCAC	G	1081.73	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:54,31:0.36:85
chr19	15383582	rs34855805	C	A	500.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:27,24:0.47:51
chr19	15471856	rs4809184	T	C	5265.77	.	AC=1;AF=0.500;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	0/1:149,252:0.63:401
chr19	15485350	rs4809185	C	T	8244.77	.	AC=1;AF=0.500;AN=2;DB;DP=541;set=Intersection	GT:AD:AF:DP	0/1:166,358:0.68:524
chr19	15491033	.	CCCT	C	220.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.945;ClippingRankSum=0.000;DP=107;ExcessHet=3.0103;FS=1.215;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.35;ReadPosRankSum=-1.456;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:82,12:0.13:94
chr19	15508130	rs7247749	G	A	1392.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:39,64:0.62:103
chr19	15508362	rs2058322	G	C	2414.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr19	15511205	.	CT	C	307.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.039;ClippingRankSum=0.000;DP=158;ExcessHet=3.0103;FS=4.052;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=2.026;QD=2.54;ReadPosRankSum=0.066;SOR=0.392;set=HC	GT:AD:AF:DP	0/1:79,42:0.35:121
chr19	15539439	rs887898	A	G	589.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:24,24:0.50:48
chr19	15549255	rs1005953	C	T	347.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:4,13:0.76:17
chr19	15549939	rs929613	C	T	4291.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.789;ClippingRankSum=0.000;DB;DP=353;ExcessHet=3.0103;FS=2.483;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.33;ReadPosRankSum=1.050;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:120,202:0.63:322
chr19	15563386	.	TGG	T,TG	855.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.849;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.72;MQRankSum=0.563;QD=19.45;ReadPosRankSum=-1.885;SOR=4.514;set=HC	GT:AD:AF:DP	1/2:3,13,28:0.30,0.64:44
chr19	15563757	.	G	C	316.77	.	AC=1;AF=0.500;AN=2;DP=32;set=Intersection	GT:AD:AF:DP	0/1:19,13:0.41:32
chr19	15569592	rs4809193	C	G	950.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr19	15569596	rs34234014	A	AC	731.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:1,25:0.96:26
chr19	15570931	rs3764566	G	A	668.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:37,32:0.46:69
chr19	15580290	rs36020076	G	A	3385.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:106,158:0.60:264
chr19	15582863	rs34440547	C	T	1709.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:53,76:0.59:129
chr19	15586672	rs892145	A	T	4227.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:120,196:0.62:316
chr19	15587185	rs733731	C	T	7654.77	.	AC=1;AF=0.500;AN=2;DB;DP=571;set=Intersection	GT:AD:AF:DP	0/1:215,344:0.62:559
chr19	15587345	rs3813135	T	C	2111.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:50,84:0.63:134
chr19	15640669	rs73512652	G	A	712.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:74,39:0.35:113
chr19	15648148	rs4310987	C	T	1737.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr19	15651539	rs201608860	GCC	G	4952.73	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr19	15651548	rs372183725	AAT	A	5040.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.11;SOR=4.387;set=HC	GT:AD:AF:DP	1/1:0,107:1.00:107
chr19	15651551	rs372614865	T	G	4651.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.73;SOR=4.325;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr19	15651553	rs62113202	C	G	4651.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.73;SOR=4.325;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr19	15651556	.	G	GAGC	4642.73	.	AC=2;AF=1.00;AN=2;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.37;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,98:1.00:98
chr19	15651560	rs62113205	C	G	3841.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.85;SOR=4.255;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr19	15651562	rs139932061	CG	C	3697.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr19	15651564	rs60465772	A	T	3661.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.66;SOR=4.255;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr19	15651568	rs55832992	C	A	3461.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.55;SOR=4.091;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr19	15726487	rs4646523	G	T	9974.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	1/1:0,361:1.00:361
chr19	15726560	rs73001907	G	T	4480.77	.	AC=1;AF=0.500;AN=2;DB;DP=657;set=Intersection	GT:AD:AF:DP	0/1:406,242:0.37:648
chr19	15726721	rs148338083	A	AACTCACTCATTCCTCTGATC	2434.73	.	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.68;QD=46.82;SOR=5.058;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr19	15730498	rs55848814	G	GC	8604.73	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr19	15730606	rs28669833	C	T	1337.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:136,74:0.35:210
chr19	15739084	rs4239613	T	C	4352.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:92,190:0.67:282
chr19	15739274	rs2056820	C	T	11402.77	.	AC=1;AF=0.500;AN=2;DB;DP=799;set=Intersection	GT:AD:AF:DP	0/1:288,504:0.64:792
chr19	15739315	rs2056821	T	C	10399.77	.	AC=1;AF=0.500;AN=2;DB;DP=712;set=Intersection	GT:AD:AF:DP	0/1:255,453:0.64:708
chr19	15739597	rs2056822	A	C	9502.77	.	AC=1;AF=0.500;AN=2;DB;DP=660;set=Intersection	GT:AD:AF:DP	0/1:220,436:0.66:656
chr19	15739992	rs2239366	T	C	1298.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:37,52:0.58:89
chr19	15740220	rs4239614	C	T	5518.77	.	AC=1;AF=0.500;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	0/1:164,253:0.61:417
chr19	15740268	rs2239367	C	G	3776.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.081;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=2.088;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.34;ReadPosRankSum=0.305;SOR=0.917;set=HC	GT:AD:AF:DP	0/1:74,103:0.58:177
chr19	15740275	rs2283605	G	A	3595.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.266;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=4.408;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.20;ReadPosRankSum=1.220;SOR=1.129;set=HC	GT:AD:AF:DP	0/1:67,88:0.57:155
chr19	15754893	rs2203998	A	G	5325.77	.	AC=1;AF=0.500;AN=2;DB;DP=780;set=Intersection	GT:AD:AF:DP	0/1:492,285:0.37:777
chr19	15754975	rs2203999	C	T	1750.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.728;ClippingRankSum=0.000;DB;DP=317;ExcessHet=3.0103;FS=3.084;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.56;ReadPosRankSum=0.265;SOR=0.927;set=HC	GT:AD:AF:DP	0/1:222,93:0.30:315
chr19	15757927	rs1290626	T	C	3022.77	.	AC=1;AF=0.500;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	0/1:221,148:0.40:369
chr19	15760213	rs2283612	C	T	1230.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:143,68:0.32:211
chr19	15760881	rs1805040	C	A	2934.77	.	AC=1;AF=0.500;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	0/1:240,148:0.38:388
chr19	15763721	rs1805042	G	A	989.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:117,58:0.33:175
chr19	15769992	rs2460817	A	T	1464.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr19	15770018	rs68106141	T	C	3151.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.70;QD=44.39;SOR=1.643;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr19	15770018	.	TCC	CCT	2327	.	AC=2;AF=1.00;AN=2;BRF=0.37;FR=1.0000;HP=5;HapScore=1;MGOF=15;MMLQ=27;MQ=59.58;NF=39;NR=14;PP=2327;QD=44.9144882049;SC=AGTTTCCACCTCCCTCCCCAA;SbPval=0.67;Source=Platypus;TC=58;TCF=41;TCR=17;TR=53;WE=15770028;WS=15770008;set=Platypus	GT:AD:AF:DP	1/1:5,53:0.91:58
chr19	15770020	rs2460819	C	T	3151.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.70;QD=44.39;SOR=1.643;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr19	15784061	rs7254013	C	A	6271.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr19	15784116	rs7253210	G	A	6401.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr19	15784152	rs17641206	T	C	2505.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:72,108:0.60:180
chr19	15784167	rs7254627	A	G	4383.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr19	15784195	rs10414690	G	C	4912.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.26;SOR=1.189;set=HC	GT:AD:AF:DP	1/1:0,111:1.00:111
chr19	15784200	rs55794585	C	T	4839.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.23;SOR=1.106;set=HC	GT:AD:AF:DP	1/1:0,107:1.00:107
chr19	15784214	rs56398124	C	T	2737.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr19	15784285	rs56205003	C	T	2564.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr19	15784319	rs56124328	G	T	3751.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr19	15784377	rs16995376	C	T	1916.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.391;ClippingRankSum=0.000;DB;DP=268;ExcessHet=3.0103;FS=2.238;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.40;ReadPosRankSum=0.494;SOR=0.558;set=HC	GT:AD:AF:DP	0/1:164,95:0.37:259
chr19	15784386	rs16995378	C	T	9543.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.35;SOR=1.175;set=HC	GT:AD:AF:DP	1/1:0,295:1.00:295
chr19	15784617	.	A	G	2662	.	AC=2;AF=1.00;AN=2;BRF=0.38;FR=1.0000;HP=2;HapScore=1;MGOF=29;MMLQ=28;MQ=59.78;NF=26;NR=87;PP=2662;QD=20;SC=TCAGTGAGCTAGGTATTGATG;SbPval=0.53;Source=Platypus;TC=113;TCF=26;TCR=87;TR=113;WE=15784625;WS=15784607;set=Platypus	GT:AD:AF:DP	1/1:0,113:1.00:113
chr19	15784660	.	A	G	1458	.	AC=2;AF=1.00;AN=2;BRF=0.35;FR=1.0000;HP=2;HapScore=1;MGOF=69;MMLQ=28;MQ=59.1;NF=9;NR=52;PP=1458;QD=24.4716592221;SC=GAGAAGCAAGAGAGATGGCTC;SbPval=0.54;Source=Platypus;TC=61;TCF=9;TCR=52;TR=61;WE=15784668;WS=15784650;set=Platypus	GT:AD:AF:DP	1/1:0,61:1.00:61
chr19	15788996	rs28523893	G	A	2606.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:46,112:0.71:158
chr19	15789034	rs28416595	C	A	6690.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:1,247:1.00:248
chr19	15789098	rs609636	A	G	7980.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr19	15789140	rs609290	A	G	7295.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr19	15791132	rs2074568	T	A	9798.77	.	AC=1;AF=0.500;AN=2;DB;DP=715;set=Intersection	GT:AD:AF:DP	0/1:253,456:0.64:709
chr19	15791180	rs8100667	C	T	11243.77	.	AC=2;AF=1.00;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	1/1:0,407:1.00:407
chr19	15793068	rs7254785	C	T	934.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:26,33:0.56:59
chr19	15793069	rs10415700	G	A	544.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:35,25:0.42:60
chr19	15793235	rs2285888	T	C	10569.77	.	AC=2;AF=1.00;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	1/1:0,400:1.00:400
chr19	15795842	rs2018030	C	T	3918.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr19	15806703	rs695149	A	C	1541.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:131,73:0.36:204
chr19	15807062	rs687774	C	T	868.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:114,48:0.30:162
chr19	15807157	rs688231	A	G	1430.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.606;ClippingRankSum=0.000;DB;DP=205;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.05;ReadPosRankSum=1.618;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:155,48:0.24:203
chr19	15807175	rs688256	G	C	1423.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.244;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=0.599;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.59;ReadPosRankSum=0.493;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:167,49:0.23:216
chr19	15807212	rs596252	T	G	535.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.377;ClippingRankSum=0.000;DB;DP=233;ExcessHet=3.0103;FS=2.896;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.34;ReadPosRankSum=-0.568;SOR=0.885;set=HC	GT:AD:AF:DP	0/1:182,47:0.21:229
chr19	15807305	rs688755	T	C	561.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.048;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=2.638;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.16;ReadPosRankSum=2.199;SOR=0.444;set=HC	GT:AD:AF:DP	0/1:100,35:0.26:135
chr19	15807830	rs593421	T	C	2028.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:211,112:0.35:323
chr19	15807884	rs593818	A	G	10472.77	.	AC=2;AF=1.00;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	1/1:0,390:1.00:390
chr19	15807984	rs594255	G	A	934.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:74,45:0.38:119
chr19	15808025	rs11669240	A	G	902.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:16,33:0.67:49
chr19	15838746	rs11672695	A	G	2339.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:32,58:0.64:90
chr19	15838753	rs34728106	AG	A	2580.73	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:38,67:0.64:105
chr19	15838967	rs2285955	G	A	7249.77	.	AC=1;AF=0.500;AN=2;DB;DP=567;set=Intersection	GT:AD:AF:DP	0/1:236,324:0.58:560
chr19	15838972	rs4569397	T	A	2621.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.237;ClippingRankSum=0.000;DB;DP=576;ExcessHet=3.0103;FS=0.588;MLEAC=1;MLEAF=0.500;MQ=59.18;MQRankSum=1.309;QD=4.62;ReadPosRankSum=0.348;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:412,156:0.27:568
chr19	15839081	rs2067083	C	T	2644.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.740;ClippingRankSum=0.000;DB;DP=732;ExcessHet=3.0103;FS=2.941;MLEAC=1;MLEAF=0.500;MQ=57.78;MQRankSum=-0.598;QD=3.63;ReadPosRankSum=0.278;SOR=0.937;set=HC	GT:AD:AF:DP	0/1:554,175:0.24:729
chr19	15839168	rs2003905	C	T	6516.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.637;ClippingRankSum=0.000;DB;DP=363;ExcessHet=3.0103;FS=7.881;MLEAC=1;MLEAF=0.500;MQ=49.90;MQRankSum=-1.745;QD=18.41;ReadPosRankSum=1.685;SOR=0.435;set=HC	GT:AD:AF:DP	0/1:182,172:0.49:354
chr19	15839174	rs2285956	C	T	6727.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.058;ClippingRankSum=0.000;DB;DP=359;ExcessHet=3.0103;FS=11.856;MLEAC=1;MLEAF=0.500;MQ=49.74;MQRankSum=-0.636;QD=19.33;ReadPosRankSum=-0.079;SOR=0.361;set=HC	GT:AD:AF:DP	0/1:168,180:0.52:348
chr19	15839459	rs11669315	G	A	4299.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:131,187:0.59:318
chr19	15839910	rs10426009	G	A	76.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:19,6:0.24:25
chr19	15839921	rs11669723	C	T	527.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:5,20:0.80:25
chr19	15852223	rs1966357	A	C	7462.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr19	15852363	rs11670007	G	A	4795.77	.	AC=1;AF=0.500;AN=2;DB;DP=722;set=Intersection	GT:AD:AF:DP	0/1:455,258:0.36:713
chr19	15852544	rs11670326	C	T	2235.77	.	AC=1;AF=0.500;AN=2;DB;DP=468;set=Intersection	GT:AD:AF:DP	0/1:328,128:0.28:456
chr19	15853080	rs2240229	G	A	2457.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:43,102:0.70:145
chr19	15853150	rs16980824	C	T	1033.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.412;ClippingRankSum=0.000;DB;DP=233;ExcessHet=3.0103;FS=0.529;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.46;ReadPosRankSum=0.941;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:166,66:0.28:232
chr19	15881751	rs8112713	A	C	14110.77	.	AC=2;AF=1.00;AN=2;DB;DP=518;set=Intersection	GT:AD:AF:DP	1/1:1,511:1.00:512
chr19	15881909	rs4807985	A	G	8431.77	.	AC=1;AF=0.500;AN=2;DB;DP=536;set=Intersection	GT:AD:AF:DP	0/1:162,365:0.69:527
chr19	15881953	rs4807986	A	G	12133.77	.	AC=2;AF=1.00;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	1/1:0,419:1.00:419
chr19	15882884	rs3752144	C	T	1854.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:131,93:0.42:224
chr19	15882980	rs3752143	AT	GG	5272.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;JOINED;set=Intersection	GT:AD:AF:DP	0/1:140,137:0.49:277
chr19	15884810	rs10421246	A	T	1184.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:148,67:0.31:215
chr19	15890388	rs7259595	A	G	118.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=67.39;QD=19.79;SOR=3.912;set=HC	GT:AD:AF:DP	0/1:0,6:1.00:6
chr19	15890517	rs11669449	A	C	2768.77	.	AC=1;AF=0.500;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	0/1:260,147:0.36:407
chr19	15890625	rs11673423	C	G	2952.77	.	AC=1;AF=0.500;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	0/1:272,157:0.37:429
chr19	15890771	rs56317414	T	G	614.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.572;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.82;ReadPosRankSum=-0.689;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:34,18:0.35:52
chr19	15890777	rs55926517	G	T	651.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.840;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.58;ReadPosRankSum=-1.174;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:31,17:0.35:48
chr19	15890800	rs56180406	A	G	425.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:28,14:0.33:42
chr19	15904853	rs11085991	G	A	8320.77	.	AC=1;AF=0.500;AN=2;DB;DP=534;set=Intersection	GT:AD:AF:DP	0/1:161,367:0.70:528
chr19	15905002	rs4808379	T	C	8673.77	.	AC=1;AF=0.500;AN=2;DB;DP=562;set=Intersection	GT:AD:AF:DP	0/1:167,389:0.70:556
chr19	15905206	rs4808380	T	C	5055.77	.	AC=1;AF=0.500;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	0/1:152,222:0.59:374
chr19	15905431	rs4808381	T	C	5594.77	.	AC=1;AF=0.500;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	0/1:172,260:0.60:432
chr19	15905639	rs3746151	C	T	6451.77	.	AC=1;AF=0.500;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	0/1:154,276:0.64:430
chr19	15905661	rs67455341	C	A	2855.77	.	AC=1;AF=0.500;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	0/1:279,157:0.36:436
chr19	15905941	rs56117700	T	C	794.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.620;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=5.327;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.58;ReadPosRankSum=0.724;SOR=2.395;set=HC	GT:AD:AF:DP	0/1:21,30:0.59:51
chr19	15918380	rs28426969	C	T	3564.77	.	AC=1;AF=0.500;AN=2;DB;DP=542;set=Intersection	GT:AD:AF:DP	0/1:349,182:0.34:531
chr19	15918647	rs4081570	G	T	2883.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.488;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=8.397;MLEAC=2;MLEAF=1.000;MQ=41.20;MQRankSum=-3.696;QD=34.33;ReadPosRankSum=-0.621;SOR=3.202;set=HC	GT:AD:AF:DP	1/1:4,80:0.95:84
chr19	15918654	rs4808382	G	A	1000.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.921;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=37.135;MLEAC=1;MLEAF=0.500;MQ=43.34;MQRankSum=-5.920;QD=10.65;ReadPosRankSum=0.823;SOR=4.565;set=HC	GT:AD:AF:DP	0/1:55,39:0.41:94
chr19	15918802	rs4808383	C	G	3152.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:102,140:0.58:242
chr19	15932760	rs3761011	A	G	2117.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:70,101:0.59:171
chr19	15932941	rs3761012	A	G	5330.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr19	15933059	rs3761013	A	G	1019.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:67,52:0.44:119
chr19	15933155	rs367984219	A	AT	1049.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.49;QD=25.60;SOR=1.845;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr19	15934599	rs2285881	C	G	1576.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:177,93:0.34:270
chr19	15934656	rs10411865	A	G	6202.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr19	15989405	rs1126433	C	T	47.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.161;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=4.337;MLEAC=1;MLEAF=0.500;MQ=52.39;MQRankSum=-3.089;QD=2.39;ReadPosRankSum=-0.587;SOR=0.061;set=HC	GT:AD:AF:DP	0/1:16,4:0.20:20
chr19	15989871	rs3093199	T	A	224.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:15,10:0.40:25
chr19	15990048	rs3093198	A	G	2732.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr19	15996820	rs2074900	G	A	1990.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:46,86:0.65:132
chr19	15997136	rs3093159	A	AC	2103.73	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:72,96:0.57:168
chr19	16001215	rs3093153	C	A	1474.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:207,91:0.31:298
chr19	16024436	rs45599331	A	T	410.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:36,18:0.33:54
chr19	16024538	rs1060467	A	G	2555.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.202;ClippingRankSum=0.000;DB;DP=244;ExcessHet=3.0103;FS=23.957;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.60;ReadPosRankSum=-1.230;SOR=1.911;set=HC	GT:AD:AF:DP	0/1:99,142:0.59:241
chr19	16024662	rs1064796	G	C	5152.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr19	16025176	rs1060463	C	T	3608.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr19	16025312	rs12985248	T	G	3972.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr19	16033379	rs4808409	G	T	4106.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:1,148:0.99:149
chr19	16034714	rs8104361	A	G	19023.77	.	AC=2;AF=1.00;AN=2;DB;DP=716;MQ=59.99;set=Intersection	GT:AD:AF:DP	1/1:0,713:1.00:713
chr19	16035517	rs3746156	G	A	2031.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr19	16038334	rs2219358	G	A	7197.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr19	16038390	rs2305803	G	T	2713.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr19	16040292	rs3765070	A	G	3688.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr19	16040473	rs4808414	T	C	1960.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr19	16045141	rs2305801	T	C	14358.77	.	AC=2;AF=1.00;AN=2;DB;DP=542;set=Intersection	GT:AD:AF:DP	1/1:0,534:1.00:534
chr19	16045294	rs2305800	A	G	1502.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr19	16060021	rs16980821	C	T	18604.77	.	AC=2;AF=1.00;AN=2;DB;DP=714;set=Intersection	GT:AD:AF:DP	1/1:2,701:1.00:703
chr19	16060117	rs16980994	C	A	13205.77	.	AC=2;AF=1.00;AN=2;DB;DP=484;MQ=59.98;set=Intersection	GT:AD:AF:DP	1/1:1,474:1.00:475
chr19	16060248	rs16980822	A	G	12279.77	.	AC=2;AF=1.00;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	1/1:4,462:0.99:466
chr19	16060658	rs11880184	A	G	2980.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr19	16060827	rs1594685	T	G	2177.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr19	16130594	rs11669662	G	C	1188.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.218;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=2.472;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.03;ReadPosRankSum=0.790;SOR=0.490;set=HC	GT:AD:AF:DP	0/1:111,37:0.25:148
chr19	16130604	rs7250074	T	C	1182.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.803;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=1.527;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.83;ReadPosRankSum=2.053;SOR=0.544;set=HC	GT:AD:AF:DP	0/1:114,37:0.25:151
chr19	16130852	.	C	T	1479.77	.	AC=1;AF=0.500;AN=2;DP=207;set=Intersection	GT:AD:AF:DP	0/1:125,76:0.38:201
chr19	16131679	rs757545	T	C	2507.77	.	AC=1;AF=0.500;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	0/1:285,142:0.33:427
chr19	16136405	rs4808423	C	T	1552.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:153,84:0.35:237
chr19	16136528	rs140634016	G	GCAGCACCTGGC	2856.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.797;ClippingRankSum=0.000;DB;DP=354;ExcessHet=3.0103;FS=1.623;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=2.040;QD=11.25;ReadPosRankSum=-0.414;SOR=0.810;set=HC	GT:AD:AF:DP	0/1:171,83:0.33:254
chr19	16136923	rs757546	T	C	1837.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:202,108:0.35:310
chr19	16137025	rs757547	C	A	333.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.138;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=1.137;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.97;ReadPosRankSum=-1.124;SOR=0.872;set=HC	GT:AD:AF:DP	0/1:64,20:0.24:84
chr19	16137052	rs757548	A	C	137.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.955;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.46;ReadPosRankSum=-2.524;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:46,10:0.18:56
chr19	16146400	rs17683335	A	G	2967.77	.	AC=1;AF=0.500;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	0/1:266,162:0.38:428
chr19	16178587	rs4808031	A	C	2012.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:60,93:0.61:153
chr19	16186772	rs7260235	G	A	228.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:8,10:0.56:18
chr19	16186813	.	AC	A	38.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.285;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=1.550;MLEAC=1;MLEAF=0.500;MQ=60.65;MQRankSum=-0.749;QD=0.79;ReadPosRankSum=0.582;SOR=0.356;set=HC	GT:AD:AF:DP	0/1:41,8:0.16:49
chr19	16186815	rs10633690	C	CCA	886.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:26,24:0.48:50
chr19	16192898	rs3826722	A	G	2564.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:64,117:0.65:181
chr19	16192958	rs3786577	A	G	1949.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:32,81:0.72:113
chr19	16197421	rs2303149	A	G	1880.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:34,85:0.71:119
chr19	16228970	rs2233145	G	A	1518.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:134,83:0.38:217
chr19	16236557	rs10416989	G	A	3931.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr19	16254422	rs4321304	T	C	1298.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:29,55:0.65:84
chr19	16254694	rs2446366	A	G	2740.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr19	16263202	rs285286	G	T	951.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr19	16265494	rs111524	G	A	280.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr19	16268207	rs5827321	TA	T	15891.73	.	AC=2;AF=1.00;AN=2;DB;DP=671;MQ=60.02;set=Intersection	GT:AD:AF:DP	1/1:0,642:1.00:642
chr19	16275515	rs6512086	A	G	6281.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr19	16275655	rs6512087	C	T	13902.77	.	AC=2;AF=1.00;AN=2;DB;DP=566;set=Intersection	GT:AD:AF:DP	1/1:4,532:0.99:536
chr19	16275772	rs4808461	A	G	5662.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr19	16280516	rs111791587	G	A	585.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:55,33:0.38:88
chr19	16280634	rs2003419	A	G	678.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr19	16301312	rs206231	A	G	3829.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:4,153:0.97:157
chr19	16301544	rs2242143	G	C	4335.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr19	16320075	rs2290802	C	G	2375.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr19	16321047	rs7258138	T	C	732.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr19	16337423	rs2305939	T	C	6341.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr19	16338532	rs2124904	G	A	5746.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr19	16339069	rs2305937	G	A	7847.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr19	16339715	rs3752797	C	T	17572.77	.	AC=2;AF=1.00;AN=2;DB;DP=667;set=Intersection	GT:AD:AF:DP	1/1:1,662:1.00:663
chr19	16344528	rs2279060	C	G	4596.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr19	16345099	rs897774	T	C	4038.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr19	16435717	rs8106384	T	C	9698.77	.	AC=2;AF=1.00;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	1/1:0,374:1.00:374
chr19	16435853	rs7248864	C	T	776.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:48,38:0.44:86
chr19	16436262	rs3745318	T	C	3804.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:2,149:0.99:151
chr19	16539347	rs71178694	G	GAAGA	2468.73	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.34;QD=46.58;SOR=4.215;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr19	16547778	rs33914440	C	T	699.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:83,40:0.33:123
chr19	16582785	rs7252649	G	T	386.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr19	16591464	rs9305079	G	A	5600.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr19	16593189	rs138347151	CAACAA	C	4357.73	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr19	16593203	rs75847259	A	G	4820.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.72;QD=40.51;SOR=1.690;set=HC	GT:AD:AF:DP	1/1:0,119:1.00:119
chr19	16593415	rs8100755	G	A	5385.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr19	16594967	rs10413787	A	G	2248.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.16;SOR=2.753;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr19	16594979	rs7252242	C	T	1806.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.52;QD=43.02;SOR=2.780;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr19	16601154	rs3810196	T	C	6106.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr19	16601194	rs3810198	C	T	10077.77	.	AC=2;AF=1.00;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	1/1:0,375:1.00:375
chr19	16606742	rs3810199	G	C	3382.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr19	16606766	rs3810200	G	C	2514.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr19	16613797	.	C	CA	201.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.104;ClippingRankSum=0.000;DP=177;ExcessHet=3.0103;FS=3.567;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.000;QD=1.27;ReadPosRankSum=0.173;SOR=1.169;set=HC	GT:AD:AF:DP	0/1:123,36:0.23:159
chr19	16633950	rs1043481	T	C	3001.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr19	16666101	rs2287869	G	C	6204.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr19	16676026	.	CT	C	89.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.040;ClippingRankSum=0.000;DP=91;ExcessHet=3.0103;FS=3.890;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.23;ReadPosRankSum=-0.007;SOR=0.215;set=HC	GT:AD:AF:DP	0/1:56,17:0.23:73
chr19	16797240	rs2249827	A	G	5262.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr19	16798927	rs2547112	T	C	23168.77	.	AC=2;AF=1.00;AN=2;DB;DP=891;set=Intersection	GT:AD:AF:DP	1/1:0,881:1.00:881
chr19	16841831	rs8108763	A	G	378.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:7,16:0.70:23
chr19	16842052	rs8107776	G	T	1930.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:41,90:0.69:131
chr19	16855265	rs812847	A	G	2082.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:187,111:0.37:298
chr19	16855990	rs7247028	A	G	401.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:50,24:0.32:74
chr19	16856015	rs3848654	T	C	1480.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr19	16860084	rs11668502	C	T	3362.77	.	AC=1;AF=0.500;AN=2;DB;DP=557;set=Intersection	GT:AD:AF:DP	0/1:362,188:0.34:550
chr19	16860105	rs706764	G	A	13079.77	.	AC=2;AF=1.00;AN=2;DB;DP=497;set=Intersection	GT:AD:AF:DP	1/1:0,488:1.00:488
chr19	16860558	rs61733271	G	A	3915.77	.	AC=1;AF=0.500;AN=2;DB;DP=512;set=Intersection	GT:AD:AF:DP	0/1:312,195:0.38:507
chr19	16860602	rs61731252	T	C	3390.77	.	AC=1;AF=0.500;AN=2;DB;DP=526;set=Intersection	GT:AD:AF:DP	0/1:335,180:0.35:515
chr19	16869883	rs116006821	C	G	285.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:48,16:0.25:64
chr19	16872940	rs773852	G	A	2115.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:168,104:0.38:272
chr19	16876099	rs4808526	T	C	3052.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr19	16890459	rs10405874	T	C	143.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:10,7:0.41:17
chr19	16899838	rs2608737	A	T	2264.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr19	16905474	rs2431802	G	T	739.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr19	16923494	rs773894	C	G	4659.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.900;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=4.577;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.63;ReadPosRankSum=-0.788;SOR=1.336;set=HC	GT:AD:AF:DP	1/1:1,174:0.99:175
chr19	16957638	rs2241377	A	C	868.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr19	16976127	.	C	A	39.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.842;ClippingRankSum=-0.000;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.62;ReadPosRankSum=-0.842;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chr19	16976286	rs773911	A	G	2827.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr19	16988456	rs2303090	A	G	2768.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr19	16988476	rs2258663	T	C	2108.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr19	16999897	rs773905	T	C	319.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:6,13:0.68:19
chr19	17000131	rs773904	G	A	2942.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.428;ClippingRankSum=0.000;DB;DP=215;ExcessHet=3.0103;FS=1.097;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.69;ReadPosRankSum=1.523;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:75,140:0.65:215
chr19	17000231	rs773903	C	T	1688.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:25,64:0.72:89
chr19	17000632	rs773902	G	A	5878.77	.	AC=1;AF=0.500;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	0/1:139,265:0.66:404
chr19	17003789	rs773901	T	G	4619.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:97,210:0.68:307
chr19	17006714	.	GCA	G	1200.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.138;ClippingRankSum=0.000;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.53;MQRankSum=1.615;QD=17.15;ReadPosRankSum=-1.972;SOR=0.761;set=HC	GT:AD:AF:DP	0/1:25,45:0.64:70
chr19	17006738	rs2981474	A	G	1038.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.709;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.53;MQRankSum=1.557;QD=13.67;ReadPosRankSum=-0.656;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:26,50:0.66:76
chr19	17008578	rs2608732	G	C	1620.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:34,68:0.67:102
chr19	17011950	rs77345177	A	AC	8478.73	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr19	17025292	rs706761	G	A	12276.77	.	AC=2;AF=1.00;AN=2;DB;DP=474;set=Intersection	GT:AD:AF:DP	1/1:0,463:1.00:463
chr19	17032550	rs3745331	A	G	2772.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.226;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=1.103;QD=25.67;ReadPosRankSum=1.397;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:40,68:0.63:108
chr19	17032559	rs3745332	T	C	3006.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.274;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=1.082;QD=23.68;ReadPosRankSum=0.698;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:46,81:0.64:127
chr19	17056294	rs8100610	G	C	2504.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:46,104:0.69:150
chr19	17062644	rs8108234	T	C	682.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.139;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=11.742;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.52;ReadPosRankSum=-0.097;SOR=0.057;set=HC	GT:AD:AF:DP	0/1:15,29:0.66:44
chr19	17068524	rs1457091	G	A	1008.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:18,41:0.69:59
chr19	17068621	rs1457090	C	G	3806.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:87,174:0.67:261
chr19	17111297	rs4808551	A	G	1991.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:38,94:0.71:132
chr19	17111411	rs4808064	A	G	2828.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:72,121:0.63:193
chr19	17119560	rs897768	T	C	2119.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr19	17160564	rs4808557	T	C	82.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.040;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.60;ReadPosRankSum=0.705;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:17,6:0.26:23
chr19	17163661	rs2305758	C	T	2083.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.379;ClippingRankSum=0.000;DB;DP=407;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.24;ReadPosRankSum=-0.424;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:276,122:0.31:398
chr19	17166896	rs3214849	TAA	T	1047.73	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:58,30:0.34:88
chr19	17166981	rs2278997	G	A	298.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:11,14:0.56:25
chr19	17169758	rs2305757	G	C	2828.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:83,130:0.61:213
chr19	17170540	rs1551552	GG	AT	1778.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;JOINED;set=Intersection	GT:AD:AF:DP	0/1:27,45:0.62:72
chr19	17170885	rs1130222	C	T	4101.77	.	AC=1;AF=0.500;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	0/1:147,184:0.56:331
chr19	17171035	rs35562523	TAAA	T,TAA	1171.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.660;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.09;MQRankSum=0.526;QD=15.83;ReadPosRankSum=0.837;SOR=0.541;set=HC	GT:AD:AF:DP	1/2:7,36,31:0.49,0.42:74
chr19	17173418	rs71338609	A	G	1442.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:159,80:0.33:239
chr19	17173487	rs3816550	A	G	4621.77	.	AC=1;AF=0.500;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	0/1:113,204:0.64:317
chr19	17179789	rs2305754	G	A	3323.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr19	17180033	rs2305753	C	T	637.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:39,31:0.44:70
chr19	17186127	rs2305752	A	C	13047.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.857;ClippingRankSum=0.000;DB;DP=877;ExcessHet=3.0103;FS=0.555;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.03;ReadPosRankSum=-0.313;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:291,577:0.66:868
chr19	17186136	rs2305751	C	A	34538.77	.	AC=2;AF=1.00;AN=2;DB;DP=931;set=Intersection	GT:AD:AF:DP	1/1:2,920:1.00:922
chr19	17212992	rs3745349	C	T	5439.73	.	AC=1;AF=0.500;AN=2;DB;DP=889;set=Intersection	GT:AD:AF:DP	0/1:574,300:0.34:874
chr19	17283383	rs11463235	A	AG	2760.73	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr19	17286438	rs8113494	A	T	853.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:21,35:0.62:56
chr19	17299004	rs55660319	G	T	191.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:25,12:0.32:37
chr19	17301880	rs4808072	T	C	6612.77	.	AC=1;AF=0.500;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	0/1:133,288:0.68:421
chr19	17302056	rs962918	A	G	1083.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:30,41:0.58:71
chr19	17306031	rs2279003	T	C	7707.77	.	AC=1;AF=0.500;AN=2;DB;DP=564;set=Intersection	GT:AD:AF:DP	0/1:205,354:0.63:559
chr19	17311308	rs8107108	C	T	501.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:4,19:0.83:23
chr19	17316697	rs12327728	C	G	2788.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr19	17318012	rs79829421	G	A	2575.77	.	AC=1;AF=0.500;AN=2;DB;DP=484;set=Intersection	GT:AD:AF:DP	0/1:328,154:0.32:482
chr19	17318018	rs17535005	G	A	6987.77	.	AC=1;AF=0.500;AN=2;DB;DP=487;set=Intersection	GT:AD:AF:DP	0/1:159,326:0.67:485
chr19	17320272	rs117115747	C	T	398.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:8,15:0.65:23
chr19	17321462	rs55888795	C	A	363.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:5,14:0.74:19
chr19	17322415	rs8101691	C	T	2124.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:64,94:0.59:158
chr19	17326124	rs113461568	G	A	882.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:29,42:0.59:71
chr19	17326567	rs388484	A	T	995.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr19	17330060	rs414528	T	C	14006.77	.	AC=2;AF=1.00;AN=2;DB;DP=544;set=Intersection	GT:AD:AF:DP	1/1:0,535:1.00:535
chr19	17337025	rs2288544	C	T	5008.77	.	AC=1;AF=0.500;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	0/1:152,231:0.60:383
chr19	17337223	rs2288542	G	A	1670.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:42,63:0.60:105
chr19	17337555	rs3745163	C	A	2692.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:98,124:0.56:222
chr19	17338033	rs891202	C	T	4755.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:93,200:0.68:293
chr19	17346920	.	CGGGG	C	134.94	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383;ClippingRankSum=-0.000;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.98;MQRankSum=0.210;QD=22.49;ReadPosRankSum=-0.674;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:1,5:0.83:6
chr19	17361064	rs10415471	C	T	2006.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:47,91:0.66:138
chr19	17362526	rs10469471	A	G	4085.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:87,173:0.67:260
chr19	17362941	rs7247493	A	C	961.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:20,39:0.66:59
chr19	17366110	rs35026554	CA	C	1201.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.701;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=2.838;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.803;QD=9.39;ReadPosRankSum=1.484;SOR=1.031;set=HC	GT:AD:AF:DP	0/1:45,83:0.65:128
chr19	17366278	rs4430871	T	C	9347.77	.	AC=1;AF=0.500;AN=2;DB;DP=637;set=Intersection	GT:AD:AF:DP	0/1:204,429:0.68:633
chr19	17367585	rs4464206	G	C	928.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:11,34:0.76:45
chr19	17379558	rs10424178	C	T	1279.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:23,57:0.71:80
chr19	17382505	rs10420922	A	T	2471.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:38,107:0.74:145
chr19	17384651	rs113272353	C	T	3109.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:76,136:0.64:212
chr19	17387176	rs34084277	A	G	2758.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:78,124:0.61:202
chr19	17387254	rs61634114	G	A	6303.77	.	AC=1;AF=0.500;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	0/1:174,274:0.61:448
chr19	17389648	rs10406920	C	T	3837.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:46,165:0.78:211
chr19	17389704	rs8170	G	A	3866.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:55,168:0.75:223
chr19	17392483	rs7246262	C	G	1728.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr19	17392894	rs8100241	G	A	1248.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:107,64:0.37:171
chr19	17393015	rs1864116	C	T	1119.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr19	17393449	rs73509996	T	G	339.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:5,15:0.75:20
chr19	17393504	rs1864113	G	C	1391.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr19	17393530	rs8108174	T	A	444.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:43,25:0.37:68
chr19	17393925	rs56069439	C	A	910.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:19,35:0.65:54
chr19	17394124	rs2363956	T	G	3023.77	.	AC=1;AF=0.500;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	0/1:226,150:0.40:376
chr19	17394504	rs891017	A	C	34736.77	.	AC=2;AF=1.00;AN=2;DB;DP=1298;set=Intersection	GT:AD:AF:DP	1/1:3,1279:1.00:1282
chr19	17394839	rs66753001	A	G	10570.77	.	AC=1;AF=0.500;AN=2;DB;DP=770;set=Intersection	GT:AD:AF:DP	0/1:276,489:0.64:765
chr19	17395003	rs11086065	A	G	7923.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr19	17395055	rs11882562	C	G	4854.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr19	17395182	rs4808614	G	T	755.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr19	17395192	rs60208686	CT	C	469.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr19	17396549	rs751599	T	C	5887.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr19	17396761	rs891018	T	C	958.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:1,36:0.97:37
chr19	17397244	rs10425939	C	T	1626.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:38,76:0.67:114
chr19	17397479	rs11880549	G	T	225.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.836;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.00;ReadPosRankSum=1.570;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:95,18:0.16:113
chr19	17397481	rs1465581	G	T	544.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.625;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=1.826;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.19;ReadPosRankSum=0.487;SOR=0.922;set=HC	GT:AD:AF:DP	0/1:78,27:0.26:105
chr19	17397483	rs367668712	G	T	1218.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.909;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=2.644;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.95;ReadPosRankSum=1.184;SOR=0.860;set=HC	GT:AD:AF:DP	0/1:55,47:0.46:102
chr19	17397487	.	GTGTGTGTGTGTGTT	G	1000.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.353;ClippingRankSum=0.000;DP=170;ExcessHet=3.0103;FS=7.428;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.48;ReadPosRankSum=2.447;SOR=0.915;set=HC	GT:AD:AF:DP	0/1:75,43:0.36:118
chr19	17397499	.	GTT	G	84.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.096;ClippingRankSum=0.000;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.69;ReadPosRankSum=2.793;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:104,19:0.15:123
chr19	17397700	rs10401700	A	C	1380.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr19	17411507	rs34641950	G	C	567.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:32,25:0.44:57
chr19	17412366	rs11086066	G	A	1186.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:127,65:0.34:192
chr19	17412399	rs11086067	G	A	873.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:111,53:0.32:164
chr19	17416590	rs3217329	CT	C	5407.73	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr19	17424932	rs2288463	A	G	4547.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:1,163:0.99:164
chr19	17424947	rs12327712	T	G	2523.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:47,104:0.69:151
chr19	17430319	rs145884597	AAG	A	969.73	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:81,36:0.31:117
chr19	17434587	rs12977101	T	G	301.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.21;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr19	17435884	rs755123	T	C	12138.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.694;ClippingRankSum=0.000;DB;DP=378;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=32.28;ReadPosRankSum=0.285;SOR=0.252;set=HC	GT:AD:AF:DP	1/1:1,375:1.00:376
chr19	17435884	.	TGAC	CGAC,CGAT	2375	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.45;FR=0.5000,0.5000;HP=4;HapScore=1;MGOF=3;MMLQ=24;MQ=60.0;NF=126,45;NR=140,41;PP=2375,1007;QD=9.05929027273;SC=ATGTGGCCCCTGACGAGAGGA;SbPval=0.52;Source=Platypus;TC=268;TCF=126;TCR=142;TR=266,86;WE=17435895;WS=17435874;set=Platypus	GT:AF:DP	0/1:0.99:268
chr19	17435887	rs56286266	C	T	2237.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.359;ClippingRankSum=0.000;DB;DP=382;ExcessHet=3.0103;FS=2.866;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.90;ReadPosRankSum=-1.722;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:248,131:0.35:379
chr19	17438642	rs8102944	A	G	14567.77	.	AC=2;AF=1.00;AN=2;DB;DP=532;set=Intersection	GT:AD:AF:DP	1/1:0,529:1.00:529
chr19	17438918	rs11667523	T	C	881.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:62,44:0.42:106
chr19	17440542	rs8110408	C	G	4826.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:131,204:0.61:335
chr19	17441488	rs1529482	C	T	1442.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr19	17448961	rs1864112	A	C	33777.77	.	AC=2;AF=1.00;AN=2;DB;DP=1271;set=Intersection	GT:AD:AF:DP	1/1:0,1266:1.00:1266
chr19	17450016	rs3810206	T	C	9111.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:0,337:1.00:337
chr19	17450445	rs11669718	G	C	402.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.429;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=1.208;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.50;ReadPosRankSum=0.533;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:42,20:0.32:62
chr19	17450445	.	GG	CA	298	.	AC=1;AF=0.500;AN=2;BRF=0.37;FR=0.5000;HP=3;HapScore=2;MGOF=6;MMLQ=24;MQ=60.0;NF=4;NR=14;PP=298;QD=19.5259930479;SC=GGGAACGCGGGGCCCTTTCTC;SbPval=0.57;Source=Platypus;TC=55;TCF=12;TCR=43;TR=18;WE=17450454;WS=17450435;set=Platypus	GT:AD:AF:DP	1/0:37,18:0.33:55
chr19	17450446	rs4808623	G	A	1969.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr19	17463214	rs62128111	C	T	2939.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:64,133:0.68:197
chr19	17471723	.	CT	C	255.75	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.231;ClippingRankSum=0.000;DP=85;ExcessHet=3.0103;FS=2.006;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=0.833;QD=5.81;ReadPosRankSum=0.255;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:16,28:0.64:44
chr19	17502698	rs2278235	G	A	2294.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr19	17514440	rs919265	G	C	1185.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.05;SOR=2.774;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr19	17514646	rs113321277	T	TGGG	18388.73	.	AC=2;AF=1.00;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	1/1:0,407:1.00:407
chr19	17516400	rs111617488	A	AGCTGAAAG	11746.73	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr19	17531450	rs2303680	G	A	3429.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:96,156:0.62:252
chr19	17531990	rs10679842	C	CT,CTT	1656.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.129;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.99;MQRankSum=0.000;QD=19.26;ReadPosRankSum=-0.625;SOR=2.277;set=HC	GT:AD:AF:DP	1/2:9,24,53:0.28,0.62:86
chr19	17533126	rs2303678	A	G	4701.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:2,171:0.99:173
chr19	17534693	rs2288408	T	C	6042.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr19	17535546	rs4808636	C	T	4814.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr19	17535658	rs4808637	A	C	13284.77	.	AC=2;AF=1.00;AN=2;DB;DP=517;set=Intersection	GT:AD:AF:DP	1/1:0,502:1.00:502
chr19	17544039	rs62125232	C	T	216.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.035;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.16;ReadPosRankSum=2.125;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:28,14:0.33:42
chr19	17544165	rs10415889	C	T	4460.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr19	17544244	rs34189069	C	T	1858.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:78,89:0.53:167
chr19	17544375	rs55761990	G	A	248.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:14,12:0.46:26
chr19	17547292	rs4808641	A	G	3053.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr19	17547546	rs117008413	G	A	2585.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:91,113:0.55:204
chr19	17556054	rs3810209	A	G	7266.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr19	17559076	rs4808643	T	C	3851.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr19	17571200	rs12984622	A	G	990.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr19	17571766	rs890839	A	G	1426.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr19	17598201	rs190290088	C	T	606.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:86,48:0.36:134
chr19	17608516	rs11672333	T	C	1188.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:2,40:0.95:42
chr19	17611490	rs11879407	T	G	14066.77	.	AC=2;AF=1.00;AN=2;DB;DP=540;set=Intersection	GT:AD:AF:DP	1/1:2,529:1.00:531
chr19	17612251	rs11668681	T	C	7427.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr19	17641391	rs59324033	G	A	90.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.104;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.13;ReadPosRankSum=-0.659;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:16,6:0.27:22
chr19	17643065	rs12984143	T	C	5305.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr19	17644301	rs117340694	C	T	806.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:33,37:0.53:70
chr19	17648350	rs8107859	T	C	1413.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr19	17650608	rs57070010	G	C	2929.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr19	17651370	rs11878663	A	G	5523.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr19	17654181	rs45532635	C	T	4902.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:2,187:0.99:189
chr19	17660300	rs11666267	G	A	9195.77	.	AC=2;AF=1.00;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	1/1:0,341:1.00:341
chr19	17666636	rs7259723	C	T	893.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:1,32:0.97:33
chr19	17678077	rs11878403	C	T	3483.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr19	17679597	rs3848645	A	G	4878.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr19	17691751	rs891184	C	T	5368.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr19	17692324	rs8100092	T	G	4367.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr19	17728502	rs2287851	T	C	2335.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:55,99:0.64:154
chr19	17728572	rs56174023	C	T	2880.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:102,133:0.57:235
chr19	17729148	rs2287849	C	T	1604.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:53,64:0.55:117
chr19	17729672	rs56145097	T	TG	6490.73	.	AC=1;AF=0.500;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	0/1:133,248:0.65:381
chr19	17729787	rs56257446	T	G	2958.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:56,123:0.69:179
chr19	17734488	rs10419420	A	G	965.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr19	17738850	rs56388321	C	T	701.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:17,28:0.62:45
chr19	17743622	rs75595663	C	A	2149.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:69,97:0.58:166
chr19	17746947	rs4239634	A	G	4384.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr19	17753824	.	A	AT	126.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.455;ClippingRankSum=0.000;DP=213;ExcessHet=3.0103;FS=1.893;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=3.760;QD=0.82;ReadPosRankSum=0.071;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:124,31:0.20:155
chr19	17760561	rs11665951	C	T	613.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr19	17763392	rs1159365	A	G	10985.77	.	AC=2;AF=1.00;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	1/1:0,410:1.00:410
chr19	17766900	rs34752754	C	T	7693.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr19	17769166	rs7258943	C	T	1562.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr19	17774512	rs12151017	C	T	611.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr19	17777431	rs10424761	A	G	4699.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr19	17777508	rs9305092	C	G	3101.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr19	17778832	rs7248783	A	G	7914.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr19	17779041	rs111451373	TGCCGCTCA	T	10592.73	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr19	17786748	rs61036582	C	T	1411.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr19	17799246	.	T	TGG	4319.73	.	AC=2;AF=1.00;AN=2;DP=128;set=Intersection	GT:AD:AF:DP	1/1:3,118:0.98:121
chr19	17837528	rs371381126	G	A	2671.77	.	AC=1;AF=0.500;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	0/1:202,135:0.40:337
chr19	17881171	rs12327667	G	A	2176.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:42,96:0.70:138
chr19	17881552	rs3746197	C	T	1059.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:17,42:0.71:59
chr19	17885270	rs2287859	A	G	1327.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:44,59:0.57:103
chr19	17885308	rs2287858	G	A	1119.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:24,31:0.56:55
chr19	17885325	rs2287857	A	C	952.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:16,23:0.59:39
chr19	17885336	rs2287856	C	T	857.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:13,23:0.64:36
chr19	17886940	rs2287854	G	A	3305.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:113,150:0.57:263
chr19	17887024	rs2287853	T	C	4384.77	.	AC=1;AF=0.500;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	0/1:142,201:0.59:343
chr19	17888787	rs4808690	G	A	281.96	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:2,13:0.87:15
chr19	17892193	rs2287852	G	C	4777.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:102,197:0.66:299
chr19	17892478	rs2042299	A	G	1385.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:51,60:0.54:111
chr19	17892591	rs2042298	A	G	2957.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:108,141:0.57:249
chr19	17892796	rs67498129	CTTTTTTTTTTTTTTTT	C	544.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:3,14:0.82:17
chr19	17922795	rs36686	G	A	18657.77	.	AC=2;AF=1.00;AN=2;DB;DP=691;set=Intersection	GT:AD:AF:DP	1/1:0,688:1.00:688
chr19	17931077	rs10410852	A	G	337.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr19	17932138	rs6523	T	C	2860.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr19	17937429	rs3008	A	G	1292.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:36,58:0.62:94
chr19	17940816	rs3212781	G	C	2135.77	.	AC=1;AF=0.500;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	0/1:266,121:0.31:387
chr19	17940842	rs3212780	G	A	2440.77	.	AC=1;AF=0.500;AN=2;DB;DP=467;set=Intersection	GT:AD:AF:DP	0/1:317,139:0.30:456
chr19	17941294	rs2302603	T	C	1896.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:36,83:0.70:119
chr19	17941937	rs3212777	A	G	1289.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:44,47:0.52:91
chr19	17942005	rs3212774	A	G	3461.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:93,148:0.61:241
chr19	17945508	rs202027945	C	T	2400.77	.	AC=1;AF=0.500;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	0/1:227,127:0.36:354
chr19	17946870	rs3212765	A	AG	605.73	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:49,23:0.32:72
chr19	17955001	rs3212713	C	T	262.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.529;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=2.066;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.42;ReadPosRankSum=-0.477;SOR=0.193;set=HC	GT:AD:AF:DP	0/1:15,8:0.35:23
chr19	17955001	.	CCC	TCT	238	.	AC=1;AF=0.500;AN=2;BRF=0.34;FR=0.5000;HP=3;HapScore=2;MGOF=13;MMLQ=22;MQ=60.0;NF=5;NR=3;PP=238;QD=36.4334843578;SC=CCCACACAGCCCCATCCTTCC;SbPval=0.3;Source=Platypus;TC=21;TCF=16;TCR=5;TR=8;WE=17955011;WS=17954991;set=Platypus	GT:AD:AF:DP	0/1:13,8:0.38:21
chr19	17955003	rs3212712	C	T	262.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.408;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=2.066;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.42;ReadPosRankSum=-0.514;SOR=0.193;set=HC	GT:AD:AF:DP	0/1:15,8:0.35:23
chr19	17955021	rs3212711	G	A	71.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:22,6:0.21:28
chr19	17958777	rs7254346	T	C	1702.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:103,84:0.45:187
chr19	17970718	rs10407385	C	A	119.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:10,7:0.41:17
chr19	17970979	rs10406314	G	A	508.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:57,28:0.33:85
chr19	17973158	rs10423882	A	G	802.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:72,44:0.38:116
chr19	17973573	rs28552850	G	A	2573.77	.	AC=1;AF=0.500;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	0/1:268,146:0.35:414
chr19	17983059	rs118133504	C	T	35.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:11,4:0.27:15
chr19	17984834	rs7255301	G	A	560.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:73,29:0.28:102
chr19	17988457	rs7250061	C	T	511.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:31,23:0.43:54
chr19	17988683	rs182064161	C	T	1971.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:221,104:0.32:325
chr19	18001839	rs4808709	A	G	2884.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:59,129:0.69:188
chr19	18004393	rs35036312	G	A	385.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:4,15:0.79:19
chr19	18047283	rs4808722	T	G	5356.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:100,238:0.70:338
chr19	18047521	rs12151269	C	T	544.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:38,26:0.41:64
chr19	18053340	rs4808105	T	C	855.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr19	18053557	rs4808106	C	G	1439.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:33,63:0.66:96
chr19	18054643	rs1052564	C	T	618.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:41,29:0.41:70
chr19	18096073	rs2278993	G	A	6337.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:3,232:0.99:235
chr19	18108956	rs4808732	C	G	2028.77	.	AC=1;AF=0.500;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	0/1:277,120:0.30:397
chr19	18110890	rs4808110	C	T	747.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:68,42:0.38:110
chr19	18110994	rs4808733	T	C	187.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:17,10:0.37:27
chr19	18170265	rs3833286	T	TC	113.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.290;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=2.471;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.58;ReadPosRankSum=0.952;SOR=1.557;set=HC	GT:AD:AF:DP	0/1:35,9:0.20:44
chr19	18170384	rs3746190	G	A	889.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.286;ClippingRankSum=0.000;DB;DP=220;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.10;ReadPosRankSum=-0.693;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:158,59:0.27:217
chr19	18170657	rs12461312	C	A	734.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:34,35:0.51:69
chr19	18170680	rs17882555	G	A	1111.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:68,55:0.45:123
chr19	18170962	rs1870063	C	T	779.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:63,39:0.38:102
chr19	18171886	rs383483	A	G	2318.77	.	AC=1;AF=0.500;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	0/1:229,131:0.36:360
chr19	18172841	rs17878533	A	G	318.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:39,19:0.33:58
chr19	18182266	rs2045386	G	A	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.72;ReadPosRankSum=-2.551;SOR=0.951;set=HC	GT:AD:AF:DP	0/1:17,5:0.23:22
chr19	18218444	rs62123561	A	G	4061.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:110,174:0.61:284
chr19	18218610	rs67234314	A	T	1480.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:41,64:0.61:105
chr19	18232778	rs273483	A	G	5439.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr19	18233279	rs273486	C	G	1015.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr19	18233283	rs55849352	C	CG	884.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr19	18234441	rs740691	C	T	5224.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:3,200:0.99:203
chr19	18235352	rs123202	T	G	4537.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr19	18235424	rs123203	T	C	9303.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	1/1:0,342:1.00:342
chr19	18242675	rs273497	C	T	2005.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.48;SOR=4.265;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr19	18245512	rs2270623	C	T	10632.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.857;ClippingRankSum=0.000;DB;DP=412;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.00;ReadPosRankSum=-0.901;SOR=0.243;set=HC	GT:AD:AF:DP	1/1:2,407:1.00:409
chr19	18245807	rs12983325	C	T	8136.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.16;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,193:1.00:193
chr19	18245813	rs273499	T	C	7662.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.34;SOR=1.262;set=HC	GT:AD:AF:DP	1/1:0,169:1.00:169
chr19	18248146	rs541225	T	C	22445.77	.	AC=2;AF=1.00;AN=2;DB;DP=875;set=Intersection	GT:AD:AF:DP	1/1:1,865:1.00:866
chr19	18252829	rs613339	A	G	3105.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr19	18255359	rs8108738	G	A	9202.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:2,338:0.99:340
chr19	18256418	rs11305984	TC	T	2293.73	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr19	18257750	rs2072490	C	T	6646.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr19	18257875	rs273279	C	T	1089.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr19	18258459	rs1566030	A	G	2420.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr19	18272190	rs2241088	A	C	375.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr19	18273047	rs1011320	T	C	3343.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr19	18273410	rs2006885	A	G	2758.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr19	18276856	rs4808755	T	C	594.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr19	18279638	rs273269	T	C	10939.77	.	AC=2;AF=1.00;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	1/1:1,415:1.00:416
chr19	18305578	rs16982263	G	C	1204.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.02;SOR=1.775;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr19	18306751	rs62120383	G	A	6276.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:2,230:0.99:232
chr19	18306990	rs17683509	G	C	14234.77	.	AC=2;AF=1.00;AN=2;DB;DP=545;set=Intersection	GT:AD:AF:DP	1/1:5,526:0.99:531
chr19	18308508	rs8109807	C	T	2397.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr19	18309365	rs2271882	A	G	1801.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr19	18311111	rs3803919	A	G	6846.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.347;ClippingRankSum=0.000;DB;DP=348;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.84;ReadPosRankSum=-0.321;SOR=0.531;set=HC	GT:AD:AF:DP	1/1:6,259:0.98:265
chr19	18311199	rs1046565	A	G	13326.77	.	AC=2;AF=1.00;AN=2;DB;DP=497;set=Intersection	GT:AD:AF:DP	1/1:0,488:1.00:488
chr19	18322095	rs12611244	G	A	3276.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr19	18329240	rs1042050	T	C	11853.77	.	AC=2;AF=1.00;AN=2;DB;DP=442;set=Intersection	GT:AD:AF:DP	1/1:2,436:1.00:438
chr19	18329784	rs2229228	C	T	2040.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr19	18331357	rs5827400	AC	A	5479.73	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr19	18331859	.	T	TCCGCCAGGCCCCGCCCCACC	753.73	.	AC=2;AF=1.00;AN=2;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr19	18337260	rs4808768	G	A	498.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr19	18344068	.	C	T	2228.77	.	AC=1;AF=0.500;AN=2;DP=159;set=Intersection	GT:AD:AF:DP	0/1:59,92:0.61:151
chr19	18368810	rs999813	G	T	5183.77	.	AC=1;AF=0.500;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	0/1:114,224:0.66:338
chr19	18368969	rs999814	G	A	4333.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:123,187:0.60:310
chr19	18368988	rs999815	G	A	4070.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:118,184:0.61:302
chr19	18369120	rs2891654	G	A	3215.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:89,140:0.61:229
chr19	18369158	rs117648604	G	T	1555.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:115,79:0.41:194
chr19	18369211	rs3810434	T	G	2302.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:59,99:0.63:158
chr19	18369270	rs3810433	C	T	2123.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:58,96:0.62:154
chr19	18375563	rs12608744	G	A	5341.77	.	AC=1;AF=0.500;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	0/1:147,217:0.60:364
chr19	18375659	rs12608843	C	T	7235.77	.	AC=1;AF=0.500;AN=2;DB;DP=566;set=Intersection	GT:AD:AF:DP	0/1:213,347:0.62:560
chr19	18376407	rs8110972	T	A	4548.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:123,201:0.62:324
chr19	18376522	rs2277922	T	G	5980.77	.	AC=1;AF=0.500;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	0/1:120,260:0.68:380
chr19	18376713	rs61740749	G	A	2770.77	.	AC=1;AF=0.500;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	0/1:210,142:0.40:352
chr19	18377274	rs3746186	A	G	3473.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:100,156:0.61:256
chr19	18377496	rs8104533	C	G	9389.77	.	AC=1;AF=0.500;AN=2;DB;DP=673;set=Intersection	GT:AD:AF:DP	0/1:253,418:0.62:671
chr19	18377647	rs8103906	G	C	4032.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:93,168:0.64:261
chr19	18377981	rs61740692	C	G	4896.77	.	AC=1;AF=0.500;AN=2;DB;DP=740;set=Intersection	GT:AD:AF:DP	0/1:470,254:0.35:724
chr19	18378219	rs1469023	A	G	4520.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:107,198:0.65:305
chr19	18420704	rs2227270	C	A	896.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:100,47:0.32:147
chr19	18423402	rs2232968	T	C	14086.77	.	AC=2;AF=1.00;AN=2;DB;DP=545;set=Intersection	GT:AD:AF:DP	1/1:0,537:1.00:537
chr19	18426950	rs2232965	T	C	2038.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr19	18453813	rs113926271	C	CT	102.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.134;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=7.499;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.80;ReadPosRankSum=0.652;SOR=0.045;set=HC	GT:AD:AF:DP	0/1:17,10:0.37:27
chr19	18497024	rs1059519	G	C	3013.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr19	18497137	rs6413435	G	A	2762.77	.	AC=1;AF=0.500;AN=2;DB;DP=473;set=Intersection	GT:AD:AF:DP	0/1:315,153:0.33:468
chr19	18497141	rs1059369	T	A	7317.77	.	AC=1;AF=0.500;AN=2;DB;DP=486;set=Intersection	GT:AD:AF:DP	0/1:163,318:0.66:481
chr19	18499151	rs1059022	C	T	728.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:83,36:0.30:119
chr19	18499238	rs1804826	G	T	6321.77	.	AC=1;AF=0.500;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	0/1:137,277:0.67:414
chr19	18499780	rs1227733	A	G	5621.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.24;SOR=1.593;set=HC	GT:AD:AF:DP	1/1:0,147:1.00:147
chr19	18499780	.	AGGAC	GGGAC,GGGAG	1070	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.45;FR=0.5000,0.5000;HP=4;HapScore=1;MGOF=3;MMLQ=24;MQ=60.0;NF=31,17;NR=75,44;PP=477,1070;QD=4.82803030705;SC=ACCTGCGCGGAGGACGCGACC;SbPval=0.57;Source=Platypus;TC=107;TCF=32;TCR=75;TR=106,61;WE=18499792;WS=18499770;set=Platypus	GT:AF:DP	0/1:0.99:107
chr19	18499784	rs1055150	C	G	2110.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.761;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=1.562;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.52;ReadPosRankSum=-0.971;SOR=0.545;set=HC	GT:AD:AF:DP	0/1:46,90:0.66:136
chr19	18502728	rs6512264	C	A	849.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr19	18502835	rs6512265	G	A	4176.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr19	18503019	rs7254789	T	C	834.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:56,44:0.44:100
chr19	18503093	rs6512266	T	G	1294.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr19	18530621	rs202214958	C	CG	198.73	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:19,9:0.32:28
chr19	18530656	.	CGGGGGCGCGCGACCCCCGAGGGGCACGAGATTGGCG	C	740	.	AC=1;AF=0.500;AN=2;BRF=0.27;FR=0.5000;HP=7;HapScore=1;MGOF=18;MMLQ=24;MQ=60.0;NF=0;NR=5;PP=740;QD=154.2;SC=GCGAGATTGGCGGGGGCGCGC;SbPval=1.0;Source=Platypus;TC=14;TCF=0;TCR=14;TR=5;WE=18530699;WS=18530646;set=Platypus	GT:AD:AF:DP	0/1:9,5:0.36:14
chr19	18538742	rs10405636	A	C	2204.77	.	AC=1;AF=0.500;AN=2;DB;DP=467;set=Intersection	GT:AD:AF:DP	0/1:324,136:0.30:460
chr19	18541579	rs11395316	G	GA	6564.73	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr19	18542000	rs146733624	GGTCCTGGTGACCACTGGTGCCTGA	G	1025.73	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:80,31:0.28:111
chr19	18542701	rs10408290	C	T	5160.77	.	AC=1;AF=0.500;AN=2;DB;DP=752;set=Intersection	GT:AD:AF:DP	0/1:467,277:0.37:744
chr19	18543054	rs10409003	C	T	1386.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:128,75:0.37:203
chr19	18544467	rs2288428	T	C	446.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:24,20:0.45:44
chr19	18544498	rs2544723	A	C	3559.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.50;SOR=2.133;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr19	18544501	rs62122438	C	T	3604.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.96;SOR=2.191;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr19	18544505	rs2544724	G	C	3549.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.82;SOR=2.162;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr19	18544677	rs78783575	G	GC	6502.73	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr19	18546029	rs35926638	AG	A	569.73	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:46,26:0.36:72
chr19	18546678	rs2303697	T	C	6525.77	.	AC=1;AF=0.500;AN=2;DB;DP=979;set=Intersection	GT:AD:AF:DP	0/1:621,341:0.35:962
chr19	18547305	rs4595905	T	A	2310.77	.	AC=1;AF=0.500;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	0/1:225,119:0.35:344
chr19	18548884	rs2303696	T	C	605.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:71,33:0.32:104
chr19	18557673	rs2303693	C	T	1193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.815;ClippingRankSum=0.000;DB;DP=359;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.49;ReadPosRankSum=0.637;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:244,98:0.29:342
chr19	18562438	rs2303694	C	T	175.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:32,10:0.24:42
chr19	18568951	rs3746176	C	G	548.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:51,25:0.33:76
chr19	18576484	rs2278238	T	C	1050.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:89,56:0.39:145
chr19	18581916	rs78855479	C	T	743.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:28,28:0.50:56
chr19	18650278	rs7247733	T	C	6383.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr19	18652844	rs10854166	A	G	2378.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:79,109:0.58:188
chr19	18703077	rs3170474	T	C	450.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:39,24:0.38:63
chr19	18704528	rs7256319	C	T	745.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:60,35:0.37:95
chr19	18731439	rs7258375	C	G	2313.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr19	18794460	.	G	C	2834.77	.	AC=1;AF=0.500;AN=2;DP=208;set=Intersection	GT:AD:AF:DP	0/1:76,127:0.63:203
chr19	18857939	rs373778758	AC	A	151.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.689;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.02;ReadPosRankSum=0.927;SOR=0.255;set=HC	GT:AD:AF:DP	0/1:58,17:0.23:75
chr19	18896974	.	G	A	3040.77	.	AC=1;AF=0.500;AN=2;DP=485;set=Intersection	GT:AD:AF:DP	0/1:309,162:0.34:471
chr19	18897440	rs61739916	T	C	1331.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:189,82:0.30:271
chr19	18897526	rs5827423	A	AG	3490.73	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr19	18942888	rs4808161	C	G	1018.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:69,43:0.38:112
chr19	18974200	rs2238658	A	G	1293.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:88,64:0.42:152
chr19	18979324	rs11673194	A	C	393.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:20,21:0.51:41
chr19	18980213	rs4808864	A	G	344.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr19	18989859	rs2075762	G	A	2955.77	.	AC=1;AF=0.500;AN=2;DB;DP=490;set=Intersection	GT:AD:AF:DP	0/1:333,155:0.32:488
chr19	19030652	.	C	T	4041.77	.	AC=1;AF=0.500;AN=2;DP=312;set=Intersection	GT:AD:AF:DP	0/1:128,181:0.59:309
chr19	19037053	rs2301661	T	C	8918.77	.	AC=1;AF=0.500;AN=2;DB;DP=638;set=Intersection	GT:AD:AF:DP	0/1:227,406:0.64:633
chr19	19037294	rs2301662	G	A	223.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:2,10:0.83:12
chr19	19039908	rs62138076	G	A	2303.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:54,94:0.64:148
chr19	19040312	rs1059240	G	C	5146.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr19	19049198	rs1064351	G	A	4415.77	.	AC=1;AF=0.500;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	0/1:133,210:0.61:343
chr19	19105131	rs4808896	G	A	3414.77	.	AC=1;AF=0.500;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	0/1:257,180:0.41:437
chr19	19105259	rs4808897	G	A	2411.77	.	AC=1;AF=0.500;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	0/1:272,135:0.33:407
chr19	19105773	rs3180770	G	A	2564.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:93,119:0.56:212
chr19	19135319	rs6511010	A	G	1233.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:25,47:0.65:72
chr19	19136541	rs4808907	C	T	8207.77	.	AC=1;AF=0.500;AN=2;DB;DP=620;set=Intersection	GT:AD:AF:DP	0/1:237,373:0.61:610
chr19	19137051	.	C	CA	157.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.107;ClippingRankSum=0.000;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.92;ReadPosRankSum=0.137;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:62,20:0.24:82
chr19	19145193	rs2269806	G	A	1776.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr19	19150183	rs12979565	C	T	1275.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:41,54:0.57:95
chr19	19151692	rs8104799	T	C	4319.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:123,201:0.62:324
chr19	19153801	rs3214143	G	GC	1272.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:1,38:0.97:39
chr19	19153825	rs4808909	C	G	186.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:16,10:0.38:26
chr19	19165156	rs4808910	G	A	2041.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:189,107:0.36:296
chr19	19168183	rs7258637	C	T	363.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:11,15:0.58:26
chr19	19212658	rs56144126	G	A	2933.77	.	AC=1;AF=0.500;AN=2;DB;DP=479;set=Intersection	GT:AD:AF:DP	0/1:316,163:0.34:479
chr19	19215612	rs56247515	T	TA	400.73	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:50,16:0.24:66
chr19	19230868	rs756791	A	G	1985.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:1,72:0.99:73
chr19	19232666	rs72993474	C	T	826.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:78,42:0.35:120
chr19	19243843	rs10414676	T	C	1041.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:24,38:0.61:62
chr19	19244033	rs72993497	C	T	3159.77	.	AC=1;AF=0.500;AN=2;DB;DP=569;set=Intersection	GT:AD:AF:DP	0/1:380,185:0.33:565
chr19	19245511	rs3826994	T	G	385.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:23,17:0.42:40
chr19	19245771	rs3746259	A	G	1640.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:53,76:0.59:129
chr19	19256870	rs2238663	G	A	99.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:9,5:0.36:14
chr19	19267802	rs7256766	A	G	45.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.272;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.70;ReadPosRankSum=-0.223;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:22,5:0.19:27
chr19	19267990	rs7257072	C	T	656.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:65,36:0.36:101
chr19	19307797	rs72997200	C	T	1349.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:236,87:0.27:323
chr19	19348947	rs12981871	T	C	2177.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr19	19359854	.	T	TTG	130.77	.	AC=2;AF=1.00;AN=2;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr19	19369435	rs2074295	A	G	4557.77	.	AC=1;AF=0.500;AN=2;DB;DP=710;set=Intersection	GT:AD:AF:DP	0/1:451,249:0.36:700
chr19	19380646	rs2074299	T	C	722.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:53,33:0.38:86
chr19	19380996	rs2074300	G	T	2403.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:209,119:0.36:328
chr19	19381715	rs2074301	G	A	1078.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:80,54:0.40:134
chr19	19381755	rs2074303	C	T	1748.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:157,92:0.37:249
chr19	19387743	rs2074550	A	C	1474.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:109,75:0.41:184
chr19	19388057	rs2074551	G	C	369.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.22;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr19	19388060	rs4808191	C	T	369.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.09;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr19	19407931	.	G	A	2011.77	.	AC=1;AF=0.500;AN=2;DP=138;set=Intersection	GT:AD:AF:DP	0/1:47,88:0.65:135
chr19	19408164	rs2301785	G	A	2140.77	.	AC=1;AF=0.500;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	0/1:324,132:0.29:456
chr19	19413381	rs2315022	A	G	275.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:11,12:0.52:23
chr19	19414330	rs147525144	T	C	2202.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:70,95:0.58:165
chr19	19420840	rs4808943	C	G	308.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:25,16:0.39:41
chr19	19431420	rs5827441	GT	G	134.73	.	AC=1;AF=0.500;AN=2;DB;DP=206;MQ=60.11;set=Intersection	GT:AD:AF:DP	0/1:144,41:0.22:185
chr19	19431423	rs3934667	T	G	1394.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:72,96:0.57:168
chr19	19431480	rs4539728	C	A	347.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:59,19:0.24:78
chr19	19431963	rs12460764	G	T	4203.77	.	AC=1;AF=0.500;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	0/1:162,194:0.54:356
chr19	19446936	rs769267	G	A	3396.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:97,158:0.62:255
chr19	19447933	rs34414052	G	GT,GTT	6405.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.839;ClippingRankSum=0.000;DB;DP=433;ExcessHet=3.0103;FS=0.657;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=16.77;ReadPosRankSum=-0.047;SOR=0.789;set=HC	GT:AD:AF:DP	1/2:41,250,91:0.65,0.24:382
chr19	19449603	rs2074089	G	A	3304.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:75,150:0.67:225
chr19	19449686	rs2074090	G	T	4581.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:75,204:0.73:279
chr19	19451591	rs2965190	A	G	3297.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr19	19452249	rs2301668	G	A	580.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.906;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.68;ReadPosRankSum=1.458;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:52,35:0.40:87
chr19	19453521	rs2965191	T	G	3414.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:126,162:0.56:288
chr19	19453560	rs2301669	C	A	3387.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:128,153:0.54:281
chr19	19453742	rs2965192	A	G	2757.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr19	19454828	rs2965193	G	A	1482.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:28,62:0.69:90
chr19	19456264	rs35824797	C	T	1749.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:105,80:0.43:185
chr19	19459554	rs10421505	C	T	1075.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:126,59:0.32:185
chr19	19459800	rs12982276	T	C	1538.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:159,75:0.32:234
chr19	19466269	rs2301671	C	T	1265.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:150,68:0.31:218
chr19	19545990	rs2916076	T	C	4106.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr19	19547086	rs2916077	T	C	3942.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr19	19606443	.	T	TAAAAAAA	62.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.135;ClippingRankSum=-0.000;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.84;ReadPosRankSum=-0.414;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:5,3:0.38:8
chr19	19606634	rs1047361	G	A	4461.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr19	19613381	rs892022	G	A	5349.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr19	19616026	rs3752151	T	C	2350.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr19	19625547	rs7250893	A	G	9672.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	1/1:2,355:0.99:357
chr19	19637930	rs7251447	A	G	853.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr19	19646272	rs2304098	T	C	12828.77	.	AC=2;AF=1.00;AN=2;DB;DP=491;set=Intersection	GT:AD:AF:DP	1/1:0,480:1.00:480
chr19	19648346	rs1054930	G	C	1166.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr19	19650372	.	C	CAA	206	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.012;ClippingRankSum=0.000;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.73;ReadPosRankSum=0.425;SOR=3.126;set=HC	GT:AD:AF:DP	0/1:2,13:0.87:15
chr19	19675696	rs73004933	C	T	645.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:13,24:0.65:37
chr19	19735257	rs1266503	G	T	11918.77	.	AC=2;AF=1.00;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	1/1:0,438:1.00:438
chr19	19740729	rs880090	C	G	375.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:13,17:0.57:30
chr19	19746151	rs2304128	G	T	775.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:10,30:0.75:40
chr19	19746214	rs2304129	C	G	156.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:24,10:0.29:34
chr19	19749400	.	A	AT	42.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.804;ClippingRankSum=0.000;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.91;ReadPosRankSum=1.323;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:36,11:0.23:47
chr19	19750824	rs11298700	AG	A	720.73	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:17,26:0.60:43
chr19	19751456	rs2043293	C	A	524.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:21,23:0.52:44
chr19	19754149	rs4808975	G	C	762.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:79,40:0.34:119
chr19	19756662	rs10405234	T	C	1152.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:137,65:0.32:202
chr19	19758190	rs892035	T	C	5045.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.01;SOR=3.166;set=HC	GT:AD:AF:DP	1/1:0,194:1.00:194
chr19	19765568	rs2288867	C	T	524.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:68,30:0.31:98
chr19	19766425	rs143798246	C	T	1740.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:203,94:0.32:297
chr19	19766775	rs3752152	G	A	2914.77	.	AC=1;AF=0.500;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	0/1:266,159:0.37:425
chr19	19772696	.	C	T	531.77	.	AC=1;AF=0.500;AN=2;DP=43;set=Intersection	GT:AD:AF:DP	0/1:18,25:0.58:43
chr19	19779706	rs12976582	T	C	1262.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:133,72:0.35:205
chr19	19788845	rs16996227	T	C	1531.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:147,72:0.33:219
chr19	19789528	rs2304130	A	G	1493.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:19,69:0.78:88
chr19	19790159	rs4808209	A	C	1495.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:157,80:0.34:237
chr19	19822049	rs7246866	T	C	203.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:23,11:0.32:34
chr19	19823270	rs12973901	T	A	2883.77	.	AC=1;AF=0.500;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	0/1:267,151:0.36:418
chr19	19843551	rs247774	A	G	2056.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:221,107:0.33:328
chr19	19868879	rs247782	A	C	648.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:90,33:0.27:123
chr19	19976701	rs2304169	A	T	2884.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:57,116:0.67:173
chr19	20116963	rs17679334	C	T	964.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.848;ClippingRankSum=0.000;DB;DP=238;ExcessHet=3.0103;FS=1.936;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.19;ReadPosRankSum=1.025;SOR=0.855;set=HC	GT:AD:AF:DP	0/1:172,58:0.25:230
chr19	20133846	rs7255165	C	T	1650.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:221,97:0.31:318
chr19	20150075	rs2286920	A	G	3834.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr19	20150125	rs2286921	T	C	7985.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr19	20150175	rs2286922	G	C	9744.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	1/1:0,361:1.00:361
chr19	20150247	rs2286923	A	C	7006.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr19	20150380	rs2335896	T	C	1315.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr19	20231924	rs72998610	T	G	57.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.85;ReadPosRankSum=-1.519;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:10,5:0.33:15
chr19	20295146	rs1097510	G	A	2328.77	.	AC=1;AF=0.500;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	0/1:312,136:0.30:448
chr19	20296738	rs836897	C	G	875.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:116,46:0.28:162
chr19	20297019	rs149807694	T	TTTTA	960.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.790;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=6.434;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.402;QD=11.86;ReadPosRankSum=5.303;SOR=0.143;set=HC	GT:AD:AF:DP	0/1:53,28:0.35:81
chr19	20369503	rs8103002	C	G	2947.77	.	AC=1;AF=0.500;AN=2;DB;DP=478;set=Intersection	GT:AD:AF:DP	0/1:315,159:0.34:474
chr19	20414254	rs10425483	A	G	1414.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:178,82:0.32:260
chr19	20415575	rs73000781	C	A	320.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:37,17:0.31:54
chr19	20727463	rs10411329	T	C	3347.77	.	AC=1;AF=0.500;AN=2;DB;DP=524;set=Intersection	GT:AD:AF:DP	0/1:332,186:0.36:518
chr19	20727932	rs33926	G	A	4764.77	.	AC=1;AF=0.500;AN=2;DB;DP=737;set=Intersection	GT:AD:AF:DP	0/1:446,259:0.37:705
chr19	20735138	.	G	GA	218.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.940;ClippingRankSum=0.000;DP=87;ExcessHet=3.0103;FS=1.649;MLEAC=1;MLEAF=0.500;MQ=60.62;MQRankSum=2.728;QD=2.67;ReadPosRankSum=0.805;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:53,29:0.35:82
chr19	20735196	rs7250860	A	T	2313.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.833;ClippingRankSum=0.000;DB;DP=297;ExcessHet=3.0103;FS=3.311;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=0.828;QD=7.95;ReadPosRankSum=-0.815;SOR=0.529;set=HC	GT:AD:AF:DP	0/1:169,122:0.42:291
chr19	20735272	rs7251976	T	C	3587.77	.	AC=1;AF=0.500;AN=2;DB;DP=546;set=Intersection	GT:AD:AF:DP	0/1:335,204:0.38:539
chr19	20736677	rs2562632	A	G	3952.77	.	AC=1;AF=0.500;AN=2;DB;DP=621;set=Intersection	GT:AD:AF:DP	0/1:404,211:0.34:615
chr19	20748522	rs12979592	C	A	8438.77	.	AC=1;AF=0.500;AN=2;DB;DP=584;MQ=59.96;set=Intersection	GT:AD:AF:DP	0/1:209,366:0.64:575
chr19	20806770	rs34554673	T	TCA	4845.73	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr19	20806824	rs10409289	T	C	3299.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:1,115:0.99:116
chr19	20808143	rs73002662	T	G	3032.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.213;ClippingRankSum=0.000;DB;DP=344;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.03;ReadPosRankSum=0.877;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:190,146:0.43:336
chr19	20808149	rs1991528	A	G	11497.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:0,327:1.00:327
chr19	20808374	rs61741861	A	G	2903.77	.	AC=1;AF=0.500;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	0/1:271,161:0.37:432
chr19	20808515	rs1968385	T	A	4311.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr19	20828522	rs8106117	A	G	3006.77	.	AC=1;AF=0.500;AN=2;DB;DP=489;set=Intersection	GT:AD:AF:DP	0/1:305,169:0.36:474
chr19	20844340	rs3217340	G	GAAGT	16130.73	.	AC=2;AF=1.00;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	1/1:2,363:0.99:365
chr19	20973560	rs377604472	GAAA	G	2008.73	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:101,58:0.36:159
chr19	20976742	rs1808542	A	G	2548.77	.	AC=1;AF=0.500;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	0/1:216,125:0.37:341
chr19	20988637	rs6511163	G	A	2286.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:188,116:0.38:304
chr19	21203552	rs2081054	C	T	16507.77	.	AC=2;AF=1.00;AN=2;DB;DP=607;set=Intersection	GT:AD:AF:DP	1/1:0,598:1.00:598
chr19	21205531	rs7252588	C	T	3035.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr19	21216536	rs3760839	G	A	2067.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr19	21217211	rs1470020	A	G	1295.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr19	21281765	rs34494287	T	TA	1204.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.605;ClippingRankSum=0.000;DB;DP=267;ExcessHet=3.0103;FS=3.036;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=0.875;QD=5.53;ReadPosRankSum=2.597;SOR=0.957;set=HC	GT:AD:AF:DP	0/1:123,95:0.44:218
chr19	21299774	rs36125838	T	TATA	17575.73	.	AC=2;AF=1.00;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	1/1:0,392:1.00:392
chr19	21300462	rs2884554	A	G	16087.77	.	AC=2;AF=1.00;AN=2;DB;DP=612;set=Intersection	GT:AD:AF:DP	1/1:2,592:1.00:594
chr19	21349311	rs7256576	C	T	9450.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	1/1:0,339:1.00:339
chr19	21350520	rs113788883	TA	T	330.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.646;ClippingRankSum=0.000;DB;DP=779;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=2.989;QD=0.48;ReadPosRankSum=0.151;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:563,129:0.19:692
chr19	21477403	rs1781872	T	G	2146.77	.	AC=1;AF=0.500;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	0/1:287,124:0.30:411
chr19	21477431	rs1781873	T	C	5806.77	.	AC=1;AF=0.500;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	0/1:98,246:0.72:344
chr19	21492062	rs547516	G	A	26066.77	.	AC=2;AF=1.00;AN=2;DB;DP=997;set=Intersection	GT:AD:AF:DP	1/1:1,986:1.00:987
chr19	21493246	.	C	CA	790	.	AC=1;AF=0.500;AN=2;BRF=0.26;FR=0.5000;HP=11;HapScore=4;MGOF=24;MMLQ=24;MQ=59.96;NF=50;NR=1;PP=790;QD=15.6666666667;SC=AACTCTGTCTCAAAAAAAAAA;SbPval=0.46;Source=Platypus;TC=83;TCF=82;TCR=1;TR=51;WE=21493269;WS=21493236;set=Platypus	GT:AD:AF:DP	1/0:32,51:0.61:83
chr19	21493255	rs11665988	A	T	779.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.312;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.000;QD=12.58;ReadPosRankSum=0.014;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:30,32:0.52:62
chr19	21493258	rs669560	T	A	196.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.076;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=2.648;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.000;QD=3.51;ReadPosRankSum=0.685;SOR=0.202;set=HC	GT:AD:AF:DP	0/1:38,18:0.32:56
chr19	21493261	.	T	A	1422.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.621;ClippingRankSum=0.000;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.000;QD=18.48;ReadPosRankSum=-0.561;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:37,40:0.52:77
chr19	21493278	rs34067558	TA	T	823.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.057;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=11.065;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=1.932;QD=7.10;ReadPosRankSum=-0.429;SOR=0.156;set=HC	GT:AD:AF:DP	0/1:54,62:0.53:116
chr19	21541806	rs2012013	T	C	3336.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:69,135:0.66:204
chr19	21544503	rs12981775	C	T	2607.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:56,109:0.66:165
chr19	21544514	rs12981564	A	G	2864.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:68,118:0.63:186
chr19	21544571	rs1142653	G	A	3997.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:110,177:0.62:287
chr19	21544714	rs12982282	C	G	1892.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:35,75:0.68:110
chr19	21558169	rs2358993	G	A	1634.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.066;ClippingRankSum=0.000;DB;DP=408;ExcessHet=3.0103;FS=0.640;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.05;ReadPosRankSum=-1.862;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:305,99:0.25:404
chr19	21558311	rs2914645	C	T	1349.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr19	21558818	.	C	CA	169.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.249;ClippingRankSum=0.000;DP=297;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=0.000;QD=0.65;ReadPosRankSum=0.349;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:216,44:0.17:260
chr19	21560141	rs1875256	G	A	906.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:2,34:0.94:36
chr19	21560314	rs138705140	GCA	G	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.339;ClippingRankSum=0.000;DB;DP=327;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.13;ReadPosRankSum=0.140;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:237,30:0.11:267
chr19	21561408	rs11352402	CT	C	79.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.610;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=4.123;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.80;ReadPosRankSum=-0.317;SOR=0.477;set=HC	GT:AD:AF:DP	0/1:10,11:0.52:21
chr19	21587918	rs7254059	G	T	9561.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.110;ClippingRankSum=0.000;DB;DP=631;ExcessHet=3.0103;FS=1.928;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=-1.482;QD=15.86;ReadPosRankSum=4.784;SOR=0.855;set=HC	GT:AD:AF:DP	0/1:188,415:0.69:603
chr19	21588165	rs2650847	G	A	3862.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr19	21588692	rs1055753	T	C	1522.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:63,75:0.54:138
chr19	21605645	rs11666213	G	A	69.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:13,5:0.28:18
chr19	21606429	rs4621113	G	T	3954.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:122,167:0.58:289
chr19	21606719	rs10414834	C	G	3087.77	.	AC=1;AF=0.500;AN=2;DB;DP=612;set=Intersection	GT:AD:AF:DP	0/1:413,186:0.31:599
chr19	21688495	rs73017722	C	T	3992.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:86,178:0.67:264
chr19	21688602	rs10420016	C	G	9503.77	.	AC=1;AF=0.500;AN=2;DB;DP=673;set=Intersection	GT:AD:AF:DP	0/1:229,436:0.66:665
chr19	21712442	rs77074124	G	T	3816.77	.	AC=1;AF=0.500;AN=2;DB;DP=538;set=Intersection	GT:AD:AF:DP	0/1:328,199:0.38:527
chr19	21719401	rs35782355	T	C	2247.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:57,89:0.61:146
chr19	21736788	rs2562502	T	C	2429.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr19	21736838	rs2681370	T	C	363.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:23,17:0.42:40
chr19	21838002	rs7351091	G	T	1952.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:49,85:0.63:134
chr19	21838113	rs34320073	A	AGAT	3105.73	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:59,81:0.58:140
chr19	21838146	rs7351088	CA	TG	2827.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;JOINED;set=Intersection	GT:AD:AF:DP	0/1:56,72:0.56:128
chr19	21838240	rs6511279	C	A	1847.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:48,75:0.61:123
chr19	21838351	rs7508059	A	G	4222.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:125,188:0.60:313
chr19	21838492	rs6511280	C	G	5097.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:111,209:0.65:320
chr19	21838565	rs6511281	T	C	9333.77	.	AC=1;AF=0.500;AN=2;DB;DP=663;set=Intersection	GT:AD:AF:DP	0/1:232,418:0.64:650
chr19	21838657	rs7508494	G	A	10874.77	.	AC=1;AF=0.500;AN=2;DB;DP=692;set=Intersection	GT:AD:AF:DP	0/1:204,476:0.70:680
chr19	21838785	rs10422946	C	T	5878.77	.	AC=1;AF=0.500;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	0/1:122,254:0.68:376
chr19	21838830	rs10422804	A	C	6313.77	.	AC=1;AF=0.500;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	0/1:143,280:0.66:423
chr19	21909437	rs147762147	TTA	T	3073.73	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:202,102:0.34:304
chr19	21932426	rs112198712	G	A	412.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:63,24:0.28:87
chr19	21933429	rs141946434	G	GGGAGGC	798.73	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:29,22:0.43:51
chr19	21948748	rs11085493	T	C	2727.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr19	21950337	rs10412066	G	C	8476.77	.	AC=1;AF=0.500;AN=2;DB;DP=570;set=Intersection	GT:AD:AF:DP	0/1:205,361:0.64:566
chr19	22115982	rs807958	A	G	97.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.517;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=2.735;MLEAC=1;MLEAF=0.500;MQ=52.86;MQRankSum=-2.534;QD=5.43;ReadPosRankSum=-1.647;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:14,4:0.22:18
chr19	22115990	rs807957	G	A	94.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.801;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=5.651;MLEAC=1;MLEAF=0.500;MQ=53.26;MQRankSum=-2.601;QD=4.99;ReadPosRankSum=-1.050;SOR=0.090;set=HC	GT:AD:AF:DP	0/1:15,4:0.21:19
chr19	22116050	rs140860406	C	CA	170.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.105;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=3.227;MLEAC=1;MLEAF=0.500;MQ=58.04;MQRankSum=-1.000;QD=4.49;ReadPosRankSum=-1.046;SOR=0.537;set=HC	GT:AD:AF:DP	0/1:23,15:0.39:38
chr19	22153495	rs2359812	A	T	1110.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:157,69:0.31:226
chr19	22154954	rs2214301	C	T	1929.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:227,101:0.31:328
chr19	22157302	rs10419899	G	A	3746.77	.	AC=1;AF=0.500;AN=2;DB;DP=558;set=Intersection	GT:AD:AF:DP	0/1:353,198:0.36:551
chr19	22171646	rs202153431	A	T	629.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.407;ClippingRankSum=0.000;DB;DP=890;ExcessHet=3.0103;FS=24.580;MLEAC=1;MLEAF=0.500;MQ=58.73;MQRankSum=-26.209;QD=0.71;ReadPosRankSum=0.941;SOR=3.411;set=HC	GT:AD:AF:DP	0/1:808,75:0.08:883
chr19	22171651	rs199911466	C	T	597.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.076;ClippingRankSum=0.000;DB;DP=895;ExcessHet=3.0103;FS=24.858;MLEAC=1;MLEAF=0.500;MQ=58.72;MQRankSum=-25.944;QD=0.67;ReadPosRankSum=1.213;SOR=3.380;set=HC	GT:AD:AF:DP	0/1:814,74:0.08:888
chr19	22171880	rs4574045	C	T	433.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.317;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=4.818;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.63;ReadPosRankSum=1.423;SOR=0.126;set=HC	GT:AD:AF:DP	0/1:53,24:0.31:77
chr19	22193451	rs2040654	C	G	5483.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr19	22235307	rs415291	C	G	807.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:116,49:0.30:165
chr19	22235491	rs387343	T	G	3472.77	.	AC=1;AF=0.500;AN=2;DB;DP=574;set=Intersection	GT:AD:AF:DP	0/1:376,194:0.34:570
chr19	22235526	rs387315	T	C	2478.77	.	AC=1;AF=0.500;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	0/1:265,140:0.35:405
chr19	22235577	rs408312	C	T	1304.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:130,69:0.35:199
chr19	22235620	rs423926	G	C	770.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:61,33:0.35:94
chr19	22256396	rs3752163	G	A	11818.77	.	AC=1;AF=0.500;AN=2;DB;DP=881;set=Intersection	GT:AD:AF:DP	0/1:334,536:0.62:870
chr19	22270798	.	TG	CA	224.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.944;ClippingRankSum=0.000;DP=208;ExcessHet=3.0103;FS=4.798;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.34;MQRankSum=-10.360;QD=1.09;ReadPosRankSum=-0.791;SOR=1.319;set=HC	GT:AD:AF:DP	0/1:186,20:0.10:206
chr19	22270807	.	T	C	203.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.690;ClippingRankSum=0.000;DP=234;ExcessHet=3.0103;FS=6.212;MLEAC=1;MLEAF=0.500;MQ=59.40;MQRankSum=-11.242;QD=0.88;ReadPosRankSum=0.750;SOR=1.422;set=HC	GT:AD:AF:DP	0/1:211,21:0.09:232
chr19	22270813	rs367608891	A	G	179.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.068;ClippingRankSum=0.000;DB;DP=240;ExcessHet=3.0103;FS=6.226;MLEAC=1;MLEAF=0.500;MQ=59.41;MQRankSum=-11.394;QD=0.76;ReadPosRankSum=1.310;SOR=1.472;set=HC	GT:AD:AF:DP	0/1:217,21:0.09:238
chr19	22270816	.	G	A	163.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.497;ClippingRankSum=0.000;DP=245;ExcessHet=3.0103;FS=7.805;MLEAC=1;MLEAF=0.500;MQ=59.43;MQRankSum=-11.519;QD=0.67;ReadPosRankSum=1.669;SOR=1.531;set=HC	GT:AD:AF:DP	0/1:222,21:0.09:243
chr19	22270818	rs371850119	G	A	190.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.148;ClippingRankSum=0.000;DB;DP=248;ExcessHet=3.0103;FS=6.206;MLEAC=1;MLEAF=0.500;MQ=59.43;MQRankSum=-11.593;QD=0.78;ReadPosRankSum=1.645;SOR=1.496;set=HC	GT:AD:AF:DP	0/1:225,21:0.09:246
chr19	22270824	.	T	G	277.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.683;ClippingRankSum=0.000;DP=260;ExcessHet=3.0103;FS=7.172;MLEAC=1;MLEAF=0.500;MQ=59.31;MQRankSum=-11.981;QD=1.08;ReadPosRankSum=1.070;SOR=1.415;set=HC	GT:AD:AF:DP	0/1:234,24:0.09:258
chr19	22270830	.	A	G	412.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.801;ClippingRankSum=0.000;DP=285;ExcessHet=3.0103;FS=8.151;MLEAC=1;MLEAF=0.500;MQ=59.34;MQRankSum=-11.935;QD=1.47;ReadPosRankSum=0.536;SOR=1.473;set=HC	GT:AD:AF:DP	0/1:253,28:0.10:281
chr19	22270833	.	T	A	448.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.713;ClippingRankSum=0.000;DP=288;ExcessHet=3.0103;FS=11.093;MLEAC=1;MLEAF=0.500;MQ=59.35;MQRankSum=-11.550;QD=1.58;ReadPosRankSum=0.260;SOR=1.625;set=HC	GT:AD:AF:DP	0/1:254,30:0.11:284
chr19	22270839	.	AAA	CTG	431.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.759;ClippingRankSum=0.000;DP=300;ExcessHet=3.0103;FS=11.244;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.38;MQRankSum=-11.808;QD=1.46;ReadPosRankSum=1.228;SOR=1.705;set=HC	GT:AD:AF:DP	0/1:266,30:0.10:296
chr19	22270846	rs74572877	C	G	440.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.077;ClippingRankSum=0.000;DB;DP=321;ExcessHet=3.0103;FS=8.395;MLEAC=1;MLEAF=0.500;MQ=59.48;MQRankSum=-10.803;QD=1.40;ReadPosRankSum=0.466;SOR=1.403;set=HC	GT:AD:AF:DP	0/1:280,35:0.11:315
chr19	22270897	.	G	A	957.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.770;ClippingRankSum=0.000;DP=441;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.31;MQRankSum=-12.231;QD=2.19;ReadPosRankSum=1.240;SOR=0.604;set=HC	GT:AD:AF:DP	0/1:381,56:0.13:437
chr19	22270899	.	G	T	957.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.875;ClippingRankSum=0.000;DP=450;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.33;MQRankSum=-12.368;QD=2.15;ReadPosRankSum=1.248;SOR=0.603;set=HC	GT:AD:AF:DP	0/1:390,56:0.13:446
chr19	22270912	.	G	A	695.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.259;ClippingRankSum=0.000;DP=452;ExcessHet=3.0103;FS=1.943;MLEAC=1;MLEAF=0.500;MQ=59.43;MQRankSum=-11.741;QD=1.55;ReadPosRankSum=1.462;SOR=0.795;set=HC	GT:AD:AF:DP	0/1:400,48:0.11:448
chr19	22270921	.	T	C	569.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.895;ClippingRankSum=0.000;DP=462;ExcessHet=3.0103;FS=2.049;MLEAC=1;MLEAF=0.500;MQ=59.44;MQRankSum=-12.457;QD=1.25;ReadPosRankSum=1.079;SOR=0.932;set=HC	GT:AD:AF:DP	0/1:413,44:0.10:457
chr19	22270928	.	T	C	443.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.883;ClippingRankSum=0.000;DP=462;ExcessHet=3.0103;FS=3.611;MLEAC=1;MLEAF=0.500;MQ=59.53;MQRankSum=-11.794;QD=0.97;ReadPosRankSum=0.382;SOR=1.279;set=HC	GT:AD:AF:DP	0/1:417,40:0.09:457
chr19	22270929	.	G	A	431.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.919;ClippingRankSum=0.000;DP=466;ExcessHet=3.0103;FS=3.611;MLEAC=1;MLEAF=0.500;MQ=59.54;MQRankSum=-11.849;QD=0.94;ReadPosRankSum=0.176;SOR=1.279;set=HC	GT:AD:AF:DP	0/1:421,40:0.09:461
chr19	22270934	.	G	C	338.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.381;ClippingRankSum=0.000;DP=460;ExcessHet=3.0103;FS=3.606;MLEAC=1;MLEAF=0.500;MQ=59.58;MQRankSum=-11.450;QD=0.74;ReadPosRankSum=-1.064;SOR=1.230;set=HC	GT:AD:AF:DP	0/1:416,39:0.09:455
chr19	22270935	.	G	A	353.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.241;ClippingRankSum=0.000;DP=461;ExcessHet=3.0103;FS=3.598;MLEAC=1;MLEAF=0.500;MQ=59.58;MQRankSum=-11.463;QD=0.78;ReadPosRankSum=-1.340;SOR=1.233;set=HC	GT:AD:AF:DP	0/1:417,39:0.09:456
chr19	22363826	rs7252593	G	C	5030.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.557;ClippingRankSum=0.000;DB;DP=781;ExcessHet=3.0103;FS=0.605;MLEAC=1;MLEAF=0.500;MQ=58.66;MQRankSum=-6.436;QD=6.64;ReadPosRankSum=-4.433;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:568,190:0.25:758
chr19	22363844	rs7252604	G	A	3531.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.485;ClippingRankSum=0.000;DB;DP=704;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.95;MQRankSum=-10.186;QD=5.16;ReadPosRankSum=-10.234;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:567,117:0.17:684
chr19	22363861	rs7253392	T	C	683.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.059;ClippingRankSum=0.000;DB;DP=670;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.99;MQRankSum=-15.679;QD=1.06;ReadPosRankSum=-8.771;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:593,55:0.08:648
chr19	22364233	rs12986319	C	T	2349.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;MQ=59.99;set=Intersection	GT:AD:AF:DP	0/1:168,115:0.41:283
chr19	22364434	rs36062457	G	GA	493.73	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:29,18:0.38:47
chr19	22469233	rs808373	G	C	1387.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:165,73:0.31:238
chr19	22486535	rs9304996	A	G	9560.77	.	AC=1;AF=0.500;AN=2;DB;DP=619;set=Intersection	GT:AD:AF:DP	0/1:202,409:0.67:611
chr19	22585521	rs35112061	CT	C	163.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.030;ClippingRankSum=0.000;DB;DP=284;ExcessHet=3.0103;FS=4.220;MLEAC=1;MLEAF=0.500;MQ=59.48;MQRankSum=-11.366;QD=0.60;ReadPosRankSum=1.105;SOR=1.043;set=HC	GT:AD:AF:DP	0/1:216,57:0.21:273
chr19	22586073	.	C	CA	607.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.236;ClippingRankSum=0.000;DP=81;ExcessHet=3.0103;FS=12.634;MLEAC=1;MLEAF=0.500;MQ=59.79;MQRankSum=0.000;QD=8.33;ReadPosRankSum=1.397;SOR=3.684;set=HC	GT:AD:AF:DP	0/1:32,41:0.56:73
chr19	23328940	rs7247102	G	A	12266.77	.	AC=2;AF=1.00;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	1/1:0,439:1.00:439
chr19	23406165	rs2885604	T	C	7842.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chr19	23413937	rs7256859	A	G	6929.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr19	23444815	rs181123974	G	C	350.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:23,18:0.44:41
chr19	23542290	rs428549	AG	GC	5146.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;JOINED;set=Intersection	GT:AD:AF:DP	0/1:102,131:0.56:233
chr19	23542697	rs1821845	G	C	2627.77	.	AC=1;AF=0.500;AN=2;DB;DP=538;set=Intersection	GT:AD:AF:DP	0/1:378,149:0.28:527
chr19	23543834	rs7255296	C	T	7783.77	.	AC=1;AF=0.500;AN=2;DB;DP=596;set=Intersection	GT:AD:AF:DP	0/1:227,354:0.61:581
chr19	23545004	rs296092	G	A	8134.77	.	AC=1;AF=0.500;AN=2;DB;DP=575;set=Intersection	GT:AD:AF:DP	0/1:208,355:0.63:563
chr19	23545250	rs1044095	A	G	892.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:120,50:0.29:170
chr19	23557966	rs12976946	T	A	58.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.907;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.03;ReadPosRankSum=0.321;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:19,10:0.34:29
chr19	23836725	rs113689691	T	C	5026.77	.	AC=1;AF=0.500;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	0/1:132,211:0.62:343
chr19	23837145	rs11671053	A	G	3028.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr19	23837365	rs4380159	A	C	10145.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	1/1:0,382:1.00:382
chr19	23845038	rs10418600	T	G	7758.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.59;SOR=1.418;set=HC	GT:AD:AF:DP	1/1:0,178:1.00:178
chr19	23845042	rs10418602	T	C	7622.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.65;SOR=1.381;set=HC	GT:AD:AF:DP	1/1:0,167:1.00:167
chr19	23869684	rs4020520	G	A	5820.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr19	23869823	rs2364624	T	G	18430.77	.	AC=2;AF=1.00;AN=2;DB;DP=679;set=Intersection	GT:AD:AF:DP	1/1:0,675:1.00:675
chr19	23869941	rs2364625	A	G	9618.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	1/1:0,346:1.00:346
chr19	23926332	rs10405811	G	A	781.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr19	23927252	rs1818990	C	T	19552.77	.	AC=2;AF=1.00;AN=2;DB;DP=753;set=Intersection	GT:AD:AF:DP	1/1:0,731:1.00:731
chr19	23927468	rs1818989	A	G	7543.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr19	23927741	rs61397759	CCA	C	2603.73	.	AC=2;AF=1.00;AN=2;DB;DP=68;MQ=60.16;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr19	23928102	rs7248674	C	G	6840.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr19	23941459	rs6417220	G	A	10031.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:0,382:1.00:382
chr19	24097595	rs111556259	C	T	1506.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:36,65:0.64:101
chr19	24290170	rs201380373	AT	A	309.73	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:4,17:0.81:21
chr19	29567046	rs1549945	T	C	532.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:58,30:0.34:88
chr19	29567134	rs1549944	T	C	5109.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr19	29704002	rs11666764	T	C	891.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.089;ClippingRankSum=0.000;DB;DP=283;ExcessHet=3.0103;FS=3.065;MLEAC=1;MLEAF=0.500;MQ=59.16;MQRankSum=-4.424;QD=3.16;ReadPosRankSum=1.850;SOR=0.960;set=HC	GT:AD:AF:DP	0/1:243,39:0.14:282
chr19	29704010	rs8100724	A	C	940.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.438;ClippingRankSum=0.000;DB;DP=293;ExcessHet=3.0103;FS=7.337;MLEAC=1;MLEAF=0.500;MQ=59.47;MQRankSum=-6.040;QD=3.22;ReadPosRankSum=0.996;SOR=1.237;set=HC	GT:AD:AF:DP	0/1:250,42:0.14:292
chr19	30018052	rs4804888	G	T	1502.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:154,79:0.34:233
chr19	30099457	rs1465585	A	G	4081.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr19	30106130	rs72228837	CT	C	230.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.669;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=2.151;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=1.691;QD=3.61;ReadPosRankSum=0.410;SOR=1.088;set=HC	GT:AD:AF:DP	0/1:37,27:0.42:64
chr19	30193721	rs10424582	G	A	4679.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:97,208:0.68:305
chr19	30303714	rs3218029	T	TC	6175.73	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr19	30311542	rs34022336	G	GT	267.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.208;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.65;ReadPosRankSum=2.193;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:13,22:0.63:35
chr19	30313523	rs67602822	CCTT	C	494.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.574;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=1.209;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.78;ReadPosRankSum=0.995;SOR=0.452;set=HC	GT:AD:AF:DP	0/1:56,17:0.23:73
chr19	30313576	rs3218069	C	T	121.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:29,8:0.22:37
chr19	30314459	rs4805483	A	G	988.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:45,61:0.58:106
chr19	30314666	rs7257694	C	T	908.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:110,51:0.32:161
chr19	30433668	rs1990903	C	T	1284.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr19	30500118	rs3840928	GTGA	G	13623.73	.	AC=2;AF=1.00;AN=2;DB;DP=831;set=Intersection	GT:AD:AF:DP	1/1:62,625:0.91:687
chr19	30500143	.	TGAC	T	2990	.	AC=1;AF=0.500;AN=2;BRF=0.48;FR=0.5000;HP=1;HapScore=1;MGOF=16;MMLQ=22;MQ=60.45;NF=62;NR=236;PP=2990;QD=20;SC=ATGATGATGATGACGACGACG;SbPval=0.78;Source=Platypus;TC=437;TCF=109;TCR=328;TR=298;WE=30500153;WS=30500130;set=Platypus	GT:AD:AF:DP	1/0:139,298:0.68:437
chr19	31038995	rs1469705	T	C	2291.77	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:214,124:0.37:338
chr19	31048232	rs12489	G	A	477.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:38,21:0.36:59
chr19	31768416	rs3745784	A	G	5837.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr19	31770009	rs28609894	C	T	13887.77	.	AC=2;AF=1.00;AN=2;DB;DP=580;set=Intersection	GT:AD:AF:DP	1/1:0,552:1.00:552
chr19	31840190	rs71173962	AG	A	1882.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr19	31930388	rs8103449	A	T	2855.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr19	31930590	.	AGAG	A	3110.73	.	AC=1;AF=0.500;ALERT;AN=2;DP=130;set=Intersection	GT:AD:AF:DP	0/1:44,79:0.64:123
chr19	31930594	.	A	AT	3116.73	.	AC=1;AF=0.500;ALERT;AN=2;DP=124;set=Intersection	GT:AD:AF:DP	0/1:41,79:0.66:120
chr19	32083696	rs7245697	T	C	15835.77	.	AC=2;AF=1.00;AN=2;DB;DP=620;set=Intersection	GT:AD:AF:DP	1/1:0,603:1.00:603
chr19	32873698	rs2270399	A	G	6213.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr19	32930069	rs6510249	G	A	10102.77	.	AC=2;AF=1.00;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	1/1:0,389:1.00:389
chr19	32948885	rs11385163	A	AT	1185.73	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:29,53:0.65:82
chr19	32954725	rs1544511	G	A	2962.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr19	32955406	rs7252536	A	T	213.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr19	33072069	rs10402931	G	A	955.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:8,24:0.75:32
chr19	33072085	rs10405535	A	G	1073.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:8,29:0.78:37
chr19	33072118	rs11084660	C	G	1103.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:15,51:0.77:66
chr19	33072266	rs10411464	T	C	1868.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr19	33076973	rs10500262	T	A	4157.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr19	33089431	rs17692896	G	A	626.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:12,25:0.68:37
chr19	33098632	rs2302970	G	C	4016.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr19	33098870	rs2903755	C	T	5144.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.87;SOR=2.264;set=HC	GT:AD:AF:DP	1/1:0,120:1.00:120
chr19	33098875	rs2868150	T	C	4875.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.15;SOR=2.531;set=HC	GT:AD:AF:DP	1/1:0,108:1.00:108
chr19	33106390	rs614370	T	G	1120.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr19	33106621	rs405858	C	T	8009.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr19	33110149	rs28615461	T	C	1212.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr19	33110204	rs2287669	T	C	3329.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr19	33117666	rs6510271	T	C	6008.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr19	33117842	rs6510272	C	A	4634.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr19	33117884	rs6510273	T	C	2581.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr19	33119883	rs6510274	A	G	1569.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr19	33130496	rs11084666	T	C	1668.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr19	33131112	rs3760943	G	A	3254.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:1,107:0.99:108
chr19	33131336	rs10416829	T	C	14956.77	.	AC=2;AF=1.00;AN=2;DB;DP=593;set=Intersection	GT:AD:AF:DP	1/1:0,583:1.00:583
chr19	33133936	rs3841621	CG	C	3714.73	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr19	33134425	rs259229	G	A	7075.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr19	33134635	rs259228	A	G	1071.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr19	33135458	rs259225	C	T	1190.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr19	33137629	rs259220	T	A	3175.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr19	33149768	rs259251	G	A	1762.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr19	33150042	rs201943935	TTTC	T	120.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.932;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.20;ReadPosRankSum=0.584;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:36,19:0.35:55
chr19	33167455	rs259290	G	T	2236.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr19	33167879	rs259291	G	A	1991.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr19	33182802	rs8108837	C	T	261.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:15,13:0.46:28
chr19	33183352	rs61732600	G	C	2419.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:206,124:0.38:330
chr19	33211069	rs13346373	C	T	398.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:143,67:0.32:210
chr19	33239450	rs4805805	C	G	1695.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:167,93:0.36:260
chr19	33240570	rs9783983	G	A	436.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:36,23:0.39:59
chr19	33264348	rs12608647	G	T	1924.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.160;ClippingRankSum=0.000;DB;DP=394;ExcessHet=3.0103;FS=0.403;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.96;ReadPosRankSum=-0.007;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:274,114:0.29:388
chr19	33281924	rs11881633	A	G	1012.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:149,61:0.29:210
chr19	33282109	rs11878874	C	T	144.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:36,10:0.22:46
chr19	33291291	rs376929162	ATG	A	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.287;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.37;ReadPosRankSum=1.108;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:76,9:0.11:85
chr19	33292568	rs12976876	A	T	781.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.581;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=0.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.47;ReadPosRankSum=2.331;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:96,47:0.33:143
chr19	33293607	rs11673502	C	T	1172.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:155,68:0.30:223
chr19	33304690	rs8107900	C	T	724.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:85,42:0.33:127
chr19	33304713	rs8111278	T	C	774.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:71,42:0.37:113
chr19	33308875	.	C	CA	349.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.500;ClippingRankSum=0.000;DP=310;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=1.923;QD=1.26;ReadPosRankSum=1.007;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:211,67:0.24:278
chr19	33309030	rs12151363	A	T	1847.77	.	AC=1;AF=0.500;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	0/1:240,111:0.32:351
chr19	33321717	.	AG	GG	2034	.	AC=1;AF=0.500;AN=2;BRF=0.35;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=8;MMLQ=28;MQ=60.0;NF=3,25;NR=19,44;PP=932,2034;QD=45.5413640199;SC=CCCTGTGCTCAGGATGGCCAG;SbPval=0.29;Source=Platypus;TC=70;TCF=6;TCR=64;TR=22,69;WE=33321725;WS=33321707;set=Platypus	GT:AD:AF:DP	0/1:31,69:0.69:100
chr19	33321717	.	AG	AGGG	2034	.	AC=1;AF=0.500;AN=2;BRF=0.35;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=8;MMLQ=28;MQ=60.0;NF=3,25;NR=19,44;PP=932,2034;QD=45.5413640199;SC=CCCTGTGCTCAGGATGGCCAG;SbPval=0.29;Source=Platypus;TC=70;TCF=6;TCR=64;TR=22,69;WE=33321725;WS=33321707;set=Platypus	GT:AD:AF:DP	0/1:48,22:0.31:70
chr19	33321717	rs3214460	A	G,AGG	3559.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=28.94;SOR=1.274;set=HC	GT:AD:AF:DP	1/2:0,86,37:0.70,0.30:123
chr19	33321775	rs17272190	C	G	239.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:39,14:0.26:53
chr19	33349295	rs2287880	T	C	472.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:41,25:0.38:66
chr19	33349488	rs2287879	T	C	713.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:57,38:0.40:95
chr19	33351376	.	CA	C	129.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.241;ClippingRankSum=0.000;DP=56;ExcessHet=3.0103;FS=2.864;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=1.278;QD=2.70;ReadPosRankSum=-0.607;SOR=0.277;set=HC	GT:AD:AF:DP	0/1:29,19:0.40:48
chr19	33351695	rs2287878	T	C	348.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:33,16:0.33:49
chr19	33353041	rs1007161	G	A	585.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.252;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.944;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.14;ReadPosRankSum=-0.164;SOR=0.894;set=HC	GT:AD:AF:DP	0/1:42,30:0.42:72
chr19	33353061	rs1007160	G	T	657.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:50,37:0.43:87
chr19	33353343	rs11084671	A	G	1362.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:89,40:0.31:129
chr19	33353357	rs11084672	C	T	1365.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:102,41:0.29:143
chr19	33353464	rs11084673	G	A	1326.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.360;ClippingRankSum=0.000;DB;DP=270;ExcessHet=3.0103;FS=2.267;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.95;ReadPosRankSum=-0.423;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:188,80:0.30:268
chr19	33353574	rs72009425	A	AT	483.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.692;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=11.184;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.72;ReadPosRankSum=-1.130;SOR=0.106;set=HC	GT:AD:AF:DP	0/1:35,37:0.51:72
chr19	33354992	rs6510300	A	G	341.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:37,20:0.35:57
chr19	33355055	rs12150889	A	G	517.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:102,35:0.26:137
chr19	33355069	rs12150890	A	G	659.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:118,43:0.27:161
chr19	33355356	rs12151145	C	T	315.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:34,16:0.32:50
chr19	33355513	rs12150904	A	C	831.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:90,45:0.33:135
chr19	33370070	rs745961	A	G	3607.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr19	33370084	rs745960	T	A	4323.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr19	33370161	rs745959	A	C	8126.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:2,300:0.99:302
chr19	33373040	rs17272274	G	A	292.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:29,15:0.34:44
chr19	33390693	rs10420862	T	A	1467.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:36,60:0.62:96
chr19	33390796	rs10418340	G	A	7162.77	.	AC=1;AF=0.500;AN=2;DB;DP=488;set=Intersection	GT:AD:AF:DP	0/1:155,325:0.68:480
chr19	33392087	rs7253415	C	T	1878.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:44,78:0.64:122
chr19	33406442	rs7246178	A	G	2654.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:77,115:0.60:192
chr19	33406484	rs7260149	G	T	1894.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:46,82:0.64:128
chr19	33406549	rs7246326	A	G	973.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:17,41:0.71:58
chr19	33430746	rs73051180	A	T	219.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.448;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=1.485;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.33;ReadPosRankSum=-0.353;SOR=0.320;set=HC	GT:AD:AF:DP	0/1:15,15:0.50:30
chr19	33439158	rs12710001	T	C	1048.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:13,43:0.77:56
chr19	33444453	rs75223967	T	G	21227.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.017;ClippingRankSum=0.000;DB;DP=774;ExcessHet=3.0103;FS=0.605;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.053;QD=28.38;ReadPosRankSum=2.917;SOR=0.781;set=HC	GT:AD:AF:DP	0/1:201,547:0.73:748
chr19	33444456	rs2944021	A	G	14187.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.620;ClippingRankSum=0.000;DB;DP=800;ExcessHet=3.0103;FS=0.554;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.304;QD=18.33;ReadPosRankSum=0.937;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:279,495:0.64:774
chr19	33444479	rs79480383	C	T	2971.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.940;ClippingRankSum=0.000;DB;DP=871;ExcessHet=3.0103;FS=0.604;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=0.283;QD=3.55;ReadPosRankSum=0.602;SOR=0.764;set=HC	GT:AD:AF:DP	0/1:617,219:0.26:836
chr19	33444511	rs80283382	T	C	11138.77	.	AC=1;AF=0.500;AN=2;DB;DP=848;set=Intersection	GT:AD:AF:DP	0/1:288,514:0.64:802
chr19	33444556	.	T	C	2962	.	AC=1;AF=0.500;AN=2;BRF=0.61;FR=0.5000;HP=1;HapScore=1;MGOF=87;MMLQ=24;MQ=60.0;NF=92;NR=222;PP=2962;QD=20;SC=AGGTCATCACTGTGGCCTCCT;SbPval=0.87;Source=Platypus;TC=506;TCF=187;TCR=319;TR=314;WE=33444564;WS=33444546;set=Platypus	GT:AD:AF:DP	1/0:192,314:0.62:506
chr19	33444576	.	C	T	2962	.	AC=1;AF=0.500;AN=2;BRF=0.62;FR=0.5000;HP=3;HapScore=1;MGOF=77;MMLQ=28;MQ=59.92;NF=53;NR=191;PP=2962;QD=20;SC=TCTGTCCTCCCGGGCACTGAC;SbPval=0.97;Source=Platypus;TC=424;TCF=141;TCR=283;TR=244;WE=33444598;WS=33444566;set=Platypus	GT:AD:AF:DP	0/1:180,244:0.58:424
chr19	33444588	.	T	G	2962	.	AC=1;AF=0.500;AN=2;BRF=0.62;FR=0.5000;HP=5;HapScore=1;MGOF=77;MMLQ=28;MQ=59.91;NF=21;NR=163;PP=2962;QD=20;SC=GGCACTGACATCCCCCAATTC;SbPval=1.0;Source=Platypus;TC=373;TCF=112;TCR=261;TR=184;WE=33444598;WS=33444566;set=Platypus	GT:AD:AF:DP	0/1:189,184:0.49:373
chr19	33444773	rs11339044	CT	C	68.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.110;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=4.260;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=0.904;QD=4.30;ReadPosRankSum=1.089;SOR=2.670;set=HC	GT:AD:AF:DP	0/1:6,10:0.62:16
chr19	33464225	rs73037453	C	T	2990.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:58,125:0.68:183
chr19	33464253	.	TA	T	69.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.310;ClippingRankSum=0.000;DP=269;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=3.089;QD=0.28;ReadPosRankSum=0.550;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:209,44:0.17:253
chr19	33467620	rs7247715	T	C	597.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:23,28:0.55:51
chr19	33470806	rs8112607	G	C	1544.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:16,64:0.80:80
chr19	33470874	rs8099835	A	G	3441.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:55,156:0.74:211
chr19	33481388	rs7250684	C	T	2287.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:67,97:0.59:164
chr19	33486810	rs4805026	A	G	2911.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr19	33486822	rs8110267	T	C	1367.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:22,52:0.70:74
chr19	33487182	rs11084689	A	G	2909.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:68,123:0.64:191
chr19	33487251	rs8110730	T	C	950.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:21,42:0.67:63
chr19	33490429	.	G	T	96.77	.	AC=1;AF=0.500;AN=2;DP=32;set=Intersection	GT:AD:AF:DP	0/1:25,6:0.19:31
chr19	33490442	.	C	T	110.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.333;ClippingRankSum=0.000;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.83;MQRankSum=-5.777;QD=2.70;ReadPosRankSum=0.572;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:34,7:0.17:41
chr19	33490462	.	G	A	232.77	.	AC=1;AF=0.500;AN=2;DP=65;set=Intersection	GT:AD:AF:DP	0/1:50,14:0.22:64
chr19	33490480	rs74603434	G	A	698.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.978;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.50;MQRankSum=-7.858;QD=8.52;ReadPosRankSum=-1.950;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:57,25:0.30:82
chr19	33490487	.	C	T	233.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.644;ClippingRankSum=0.000;DP=101;ExcessHet=3.0103;FS=8.516;MLEAC=1;MLEAF=0.500;MQ=56.04;MQRankSum=-6.570;QD=2.34;ReadPosRankSum=-2.979;SOR=1.969;set=HC	GT:AD:AF:DP	0/1:83,17:0.17:100
chr19	33490585	rs78615454	G	A	481.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.633;ClippingRankSum=0.000;DB;DP=266;ExcessHet=3.0103;FS=0.563;MLEAC=1;MLEAF=0.500;MQ=54.57;MQRankSum=-4.754;QD=1.81;ReadPosRankSum=2.573;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:213,53:0.20:266
chr19	33490667	rs200498530	G	A	395.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.083;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=0.881;MLEAC=1;MLEAF=0.500;MQ=56.64;MQRankSum=-9.072;QD=3.47;ReadPosRankSum=-5.911;SOR=0.840;set=HC	GT:AD:AF:DP	0/1:86,28:0.25:114
chr19	33490685	rs8109247	T	C	1051.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:16,48:0.75:64
chr19	33498978	rs2163807	A	G	1652.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:35,76:0.68:111
chr19	33499156	.	CT	C	83.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.118;ClippingRankSum=0.000;DP=83;ExcessHet=3.0103;FS=1.378;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.442;QD=1.58;ReadPosRankSum=-0.555;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:36,17:0.32:53
chr19	33579018	rs35343047	CT	C	136.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.961;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.42;ReadPosRankSum=0.280;SOR=0.583;set=HC	GT:AD:AF:DP	0/1:20,20:0.50:40
chr19	33685836	rs60145560	T	C	1514.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr19	33695830	rs11666900	G	A	4161.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr19	33696627	rs137981177	C	T	1914.73	.	AC=1;AF=0.500;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	0/1:264,111:0.30:375
chr19	33696708	rs2112800	T	C	9189.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:0,342:1.00:342
chr19	33698291	rs3745974	T	C	5552.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:1,195:0.99:196
chr19	33698655	rs376080905	C	CGG	973.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.43;QD=40.57;SOR=3.442;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr19	33699664	rs57394649	T	TA	2367.73	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr19	33700445	rs2303093	C	T	2915.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr19	33702245	rs2241378	A	G	10985.77	.	AC=2;AF=1.00;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	1/1:0,406:1.00:406
chr19	33703103	rs11669156	C	T	4633.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr19	33703706	rs11673535	A	G	1423.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr19	33878198	rs1061338	A	G	1456.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:30,61:0.67:91
chr19	33878837	rs17570	G	A	2168.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:53,96:0.64:149
chr19	33953743	rs6510386	A	G	2261.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr19	33953800	rs78198054	G	A	1595.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:66,75:0.53:141
chr19	33954773	rs3745970	T	A	134.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr19	33968814	rs35273650	GA	G	777.73	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:76,40:0.34:116
chr19	33981054	rs2288469	G	T	1046.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:28,45:0.62:73
chr19	33984050	rs10411395	T	C	6516.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr19	34012629	rs373961040	C	A	1700.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:19,78:0.80:97
chr19	34012861	rs40500	C	T	381.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr19	34288180	.	TGTGTGTGTGC	T	1021.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.225;ClippingRankSum=0.000;DP=76;ExcessHet=3.0103;FS=2.448;MLEAC=1;MLEAF=0.500;MQ=62.38;MQRankSum=-3.738;QD=13.81;ReadPosRankSum=-0.091;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:45,29:0.39:74
chr19	34288184	rs138328510	TGTGTGCGCGC	T	1641.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:29,45:0.61:74
chr19	34288202	rs1139231	C	T	3838.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr19	34291283	rs28609628	C	G	2078.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:75,89:0.54:164
chr19	34291303	rs2303175	C	T	2481.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:76,112:0.60:188
chr19	34298013	rs147333556	A	G	194.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:8,10:0.56:18
chr19	34302673	.	C	CT	494.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.622;ClippingRankSum=0.000;DP=376;ExcessHet=3.0103;FS=1.183;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.50;ReadPosRankSum=2.241;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:250,79:0.24:329
chr19	34304260	rs60235724	A	AT	2873.73	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr19	34687746	rs3119815	C	A	679.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr19	34687809	rs8112123	T	C	130.88	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:1,5:0.83:6
chr19	34706440	rs57270694	A	G	1180.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.757;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.72;ReadPosRankSum=-1.951;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:88,65:0.42:153
chr19	34706531	rs73929373	A	G	1131.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:59,53:0.47:112
chr19	34710532	rs2297521	A	G	2585.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr19	34710807	rs2599557	A	C	677.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:44,34:0.44:78
chr19	34712654	rs536367	C	T	857.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:121,53:0.30:174
chr19	34712736	rs537252	T	C	234.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.343;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=10.369;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.73;ReadPosRankSum=-0.646;SOR=2.080;set=HC	GT:AD:AF:DP	0/1:70,16:0.19:86
chr19	34717280	.	CTT	C	30.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.668;ClippingRankSum=-0.000;DP=10;ExcessHet=3.0103;FS=3.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.41;ReadPosRankSum=0.464;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:5,4:0.44:9
chr19	34810671	rs149401501	AG	A	107.73	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:14,5:0.26:19
chr19	34824582	rs35956890	G	GT	186.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.165;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.79;ReadPosRankSum=-0.638;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:22,17:0.44:39
chr19	34838998	rs328406	C	T	111.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.753;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.86;ReadPosRankSum=0.035;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:16,7:0.30:23
chr19	34842488	rs392340	T	C	1118.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.647;ClippingRankSum=0.000;DB;DP=266;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.24;ReadPosRankSum=0.206;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:189,75:0.28:264
chr19	34843761	rs397414	C	A	2437.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:112,130:0.54:242
chr19	34843874	rs72121022	AGCCTGCCT	A	970.73	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:37,27:0.42:64
chr19	34859457	rs2099099	G	A	596.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.446;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=6.433;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.17;ReadPosRankSum=-1.167;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:104,39:0.27:143
chr19	34872355	.	G	GT	639.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.311;ClippingRankSum=0.000;DP=508;ExcessHet=3.0103;FS=0.670;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.33;ReadPosRankSum=0.223;SOR=0.835;set=HC	GT:AD:AF:DP	0/1:375,106:0.22:481
chr19	34885006	rs8108038	A	G	4906.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr19	34890322	rs2301263	G	A	3988.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr19	34904539	rs9653103	C	G	778.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr19	34922865	rs3217243	T	TGTATAAA	2952.73	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr19	34934967	.	T	G	30.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.501;ClippingRankSum=-0.000;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.13;ReadPosRankSum=0.253;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:4,2:0.33:6
chr19	34942872	rs2161472	A	T	2451.73	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.90;SOR=2.336;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr19	34945331	.	CT	C	54.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.220;ClippingRankSum=0.000;DP=128;ExcessHet=3.0103;FS=2.085;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=2.140;QD=0.46;ReadPosRankSum=-1.019;SOR=0.992;set=HC	GT:AD:AF:DP	0/1:94,25:0.21:119
chr19	34954873	rs10412944	C	G	549.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr19	34959812	rs7258977	A	G	1344.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:2,45:0.96:47
chr19	34959979	rs7259160	A	G	2845.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr19	34971763	rs7257588	T	C	5651.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr19	34971846	rs4344866	C	T	10476.77	.	AC=2;AF=1.00;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	1/1:0,403:1.00:403
chr19	34971998	rs7248705	G	A	6604.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr19	34972146	rs7248847	G	C	9316.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:0,355:1.00:355
chr19	34972892	rs12609305	A	C	252.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.98;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr19	34973413	rs1465433	T	C	567.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.81;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr19	34973476	rs8107479	G	A	398.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.46;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr19	34981191	rs2902629	A	G	300.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:49,17:0.26:66
chr19	34981505	rs4321301	G	A	1641.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:36,69:0.66:105
chr19	34985369	rs28550036	A	T	821.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.306;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=4.432;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.67;ReadPosRankSum=-0.169;SOR=0.329;set=HC	GT:AD:AF:DP	0/1:45,40:0.47:85
chr19	34985466	rs11671685	C	T	2829.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:72,131:0.65:203
chr19	34986767	rs35126035	A	C	1921.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.295;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=4.188;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.44;ReadPosRankSum=-1.404;SOR=1.352;set=HC	GT:AD:AF:DP	0/1:32,50:0.61:82
chr19	34986776	rs35570240	G	A	1897.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.066;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=1.119;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.97;ReadPosRankSum=-1.809;SOR=1.044;set=HC	GT:AD:AF:DP	0/1:29,47:0.62:76
chr19	35036089	rs7259820	G	A	2715.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr19	35231472	rs11426796	T	TA	163.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.229;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.99;ReadPosRankSum=0.237;SOR=0.504;set=HC	GT:AD:AF:DP	0/1:27,14:0.34:41
chr19	35260281	rs2242129	G	A	1023.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:99,51:0.34:150
chr19	35270543	rs7259475	G	T	498.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:73,30:0.29:103
chr19	35420841	rs2546001	A	G	6637.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:2,253:0.99:255
chr19	35420966	rs2651123	A	G	230.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:25,12:0.32:37
chr19	35422808	rs10422961	C	T	3192.77	.	AC=1;AF=0.500;AN=2;DB;DP=544;set=Intersection	GT:AD:AF:DP	0/1:360,179:0.33:539
chr19	35424504	rs2859486	C	A	551.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:75,33:0.31:108
chr19	35424739	rs2546002	C	T	103.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:28,7:0.20:35
chr19	35424759	rs2651101	G	C	84.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:17,5:0.23:22
chr19	35434238	rs1811	A	G	8835.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:0,342:1.00:342
chr19	35434448	rs62122088	A	G	1543.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:193,89:0.32:282
chr19	35434512	rs2651109	T	C	6651.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr19	35435006	rs1345658	G	A	8199.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr19	35435069	rs765746	A	G	3119.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:93,132:0.59:225
chr19	35435589	rs3761066	C	T	5646.77	.	AC=1;AF=0.500;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	0/1:113,252:0.69:365
chr19	35435776	rs1053213	G	A	1767.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:52,75:0.59:127
chr19	35448803	rs1063235	C	A	1569.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:1,58:0.98:59
chr19	35449082	rs3746243	G	A	2780.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:78,126:0.62:204
chr19	35449409	rs2651081	G	A	1297.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:193,81:0.30:274
chr19	35449760	rs2651080	G	C	1798.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:188,97:0.34:285
chr19	35450229	rs2651079	C	T	12286.77	.	AC=2;AF=1.00;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	1/1:0,450:1.00:450
chr19	35451330	rs2546024	A	G	728.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:1,26:0.96:27
chr19	35451742	rs2651078	G	A	1361.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:92,67:0.42:159
chr19	35452045	rs2546026	A	C	393.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:71,27:0.28:98
chr19	35454604	rs2546028	AA	CG	10836.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr19	35487125	rs67018685	G	A	2719.77	.	AC=1;AF=0.500;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	0/1:253,155:0.38:408
chr19	35491326	rs3072398	A	AGCCCT	1368.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr19	35502352	rs140658050	CCT	C	468.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.663;ClippingRankSum=0.000;DB;DP=886;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=3.011;QD=0.58;ReadPosRankSum=-0.075;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:725,88:0.11:813
chr19	35513896	rs4806072	C	T	3816.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr19	35524691	.	A	C	5659.77	.	AC=1;AF=0.500;AN=2;DP=380;set=Intersection	GT:AD:AF:DP	0/1:117,251:0.68:368
chr19	35533550	rs11399986	A	AC	3100.73	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr19	35541278	rs12463218	G	A	84.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:17,6:0.26:23
chr19	35541330	rs57035236	TA	T	964.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr19	35556123	rs2305744	G	A	3143.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr19	35556281	rs2305745	G	A	8806.77	.	AC=2;AF=1.00;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	1/1:0,341:1.00:341
chr19	35556300	rs2305746	A	G	8921.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,323:1.00:323
chr19	35556357	rs2305747	C	T	6520.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr19	35556640	rs1688031	T	C	4147.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr19	35556659	rs1672991	A	G	3359.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr19	35556744	rs1688030	T	C	1603.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr19	35557260	rs1042328	T	G	2467.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr19	35578055	rs17718894	G	A	2576.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:46,101:0.69:147
chr19	35590180	rs1687994	T	A	4087.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:82,182:0.69:264
chr19	35590295	.	GA	G	94.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.715;ClippingRankSum=0.000;DP=52;ExcessHet=3.0103;FS=2.277;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.20;ReadPosRankSum=-0.393;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:27,16:0.37:43
chr19	35597215	rs10422803	C	A	274.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:9,12:0.57:21
chr19	35597352	rs2445826	T	C	3733.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr19	35597462	rs10424084	A	G	8860.77	.	AC=1;AF=0.500;AN=2;DB;DP=547;set=Intersection	GT:AD:AF:DP	0/1:156,385:0.71:541
chr19	35597620	rs10423723	C	T	6391.77	.	AC=1;AF=0.500;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	0/1:155,281:0.64:436
chr19	35597729	rs7258700	C	T	3111.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:70,134:0.66:204
chr19	35602014	rs4806085	T	C	6369.77	.	AC=1;AF=0.500;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	0/1:156,295:0.65:451
chr19	35602338	rs11665663	T	C	1182.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:41,57:0.58:98
chr19	35602445	rs199877070	TGGG	T	575.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr19	35608092	rs1006162	C	T	56.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.568;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.18;ReadPosRankSum=0.074;SOR=0.394;set=HC	GT:AD:AF:DP	0/1:21,5:0.19:26
chr19	35608148	rs1688021	C	T	386.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.793;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=2.140;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.90;ReadPosRankSum=-0.653;SOR=0.391;set=HC	GT:AD:AF:DP	0/1:53,26:0.33:79
chr19	35609972	rs10543115	GGAC	G	6549.73	.	AC=2;AF=1.00;AN=2;DB;DP=145;MQ=60.59;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr19	35609981	rs10426785	C	T	6762.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr19	35610245	rs2278994	A	G	4952.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr19	35612168	rs1688016	T	A	5235.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.17;SOR=0.732;set=HC	GT:AD:AF:DP	1/1:0,208:1.00:208
chr19	35612286	rs2290650	A	G	1474.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:40,67:0.63:107
chr19	35613623	rs1688017	G	A	1369.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr19	35614272	.	ATG	A,GTG	6704.73	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;DP=206;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=38.98;SOR=0.867;set=HC	GT:AD:AF:DP	1/2:0,21,151:0.12,0.88:172
chr19	35614274	rs937089	G	A	4554.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.136;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=0.874;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.95;ReadPosRankSum=-0.748;SOR=0.835;set=HC	GT:AD:AF:DP	0/1:21,148:0.88:169
chr19	35614336	rs1672974	T	C	6807.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr19	35615995	rs14358	C	T	1938.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr19	35616016	rs1048690	G	A	2481.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr19	35616086	rs11084800	C	T	6915.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr19	35616315	rs12610146	GC	AT	10846.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr19	35616464	rs12976269	G	C	5753.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr19	35616562	rs12978414	C	G	17059.77	.	AC=2;AF=1.00;AN=2;DB;DP=625;set=Intersection	GT:AD:AF:DP	1/1:0,622:1.00:622
chr19	35616663	rs1630545	A	G	17753.77	.	AC=2;AF=1.00;AN=2;DB;DP=682;set=Intersection	GT:AD:AF:DP	1/1:4,674:0.99:678
chr19	35616692	rs1672976	C	T	14644.77	.	AC=2;AF=1.00;AN=2;DB;DP=548;set=Intersection	GT:AD:AF:DP	1/1:0,546:1.00:546
chr19	35616953	rs1632457	T	C	1476.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr19	35617122	rs937087	A	G	10182.77	.	AC=2;AF=1.00;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	1/1:0,371:1.00:371
chr19	35617270	rs1319969	T	C	7536.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr19	35617639	rs1687998	C	G	2489.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr19	35622492	rs1688001	C	T	3327.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr19	35622695	rs1673007	A	G	2169.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr19	35632165	rs151269496	TCTGGCCCCGCCTCTCCCTGGCCCCGCCTCTCCCTAGCCCCCCTCTCC	T	6237.73	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr19	35632634	rs12461849	G	A	5208.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr19	35633236	rs1687986	G	A	4322.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:1,159:0.99:160
chr19	35633503	rs1673004	C	G	4801.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr19	35642651	rs36072726	G	T	2057.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.803;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=9.570;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.87;ReadPosRankSum=-0.355;SOR=0.961;set=HC	GT:AD:AF:DP	0/1:36,86:0.70:122
chr19	35649324	rs1633915	C	G	5319.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr19	35651531	rs1617607	A	G	3046.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr19	35655151	rs1672994	T	C	6094.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr19	35657351	rs8106303	A	C	1755.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr19	35660450	rs2285515	T	C	4870.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr19	35660508	rs12110	G	A	3795.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr19	35660546	rs1046294	T	C	2356.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr19	35719106	rs565791	A	G	4684.77	.	AC=1;AF=0.500;AN=2;DB;DP=704;set=Intersection	GT:AD:AF:DP	0/1:448,249:0.36:697
chr19	35740069	rs10412357	C	G	319.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:23,17:0.42:40
chr19	35741456	rs2073900	T	C	3149.77	.	AC=1;AF=0.500;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	0/1:287,169:0.37:456
chr19	35753291	rs139389684	C	T	772.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:23,30:0.57:53
chr19	35757469	rs12459658	A	C	693.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:100,42:0.30:142
chr19	35770056	rs2280746	G	A	2362.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:188,122:0.39:310
chr19	35770174	rs12742	A	G	1055.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:74,53:0.42:127
chr19	35786868	rs2301600	C	T	889.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.341;ClippingRankSum=0.000;DB;DP=378;ExcessHet=3.0103;FS=2.179;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.35;ReadPosRankSum=-2.019;SOR=0.856;set=HC	GT:AD:AF:DP	0/1:302,76:0.20:378
chr19	35790503	rs3746248	G	A	2044.77	.	AC=1;AF=0.500;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	0/1:269,127:0.32:396
chr19	35793301	.	A	G	1133.77	.	AC=1;AF=0.500;AN=2;DP=90;set=Intersection	GT:AD:AF:DP	0/1:38,50:0.57:88
chr19	35800720	rs10411883	G	C	269.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.022;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=5.400;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.29;ReadPosRankSum=-0.527;SOR=0.197;set=HC	GT:AD:AF:DP	0/1:35,16:0.31:51
chr19	35831649	rs2239512	C	T	248.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:26,12:0.32:38
chr19	35836530	rs10406069	G	A	12152.77	.	AC=2;AF=1.00;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	1/1:0,458:1.00:458
chr19	35836855	rs10413526	C	G	1486.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.070;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=43.73;ReadPosRankSum=-0.657;SOR=0.316;set=HC	GT:AD:AF:DP	1/1:1,33:0.97:34
chr19	35836859	rs4805120	A	G	1513.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.808;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=3.378;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=40.91;ReadPosRankSum=-0.817;SOR=0.574;set=HC	GT:AD:AF:DP	1/1:1,36:0.97:37
chr19	35837428	rs12985354	G	A	4808.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr19	35843086	rs2301151	G	A	11808.77	.	AC=2;AF=1.00;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	1/1:0,428:1.00:428
chr19	35849926	rs79251979	G	A	2618.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:1,96:0.99:97
chr19	35863180	rs201159994	A	G	1731.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.66;QD=27.06;SOR=2.531;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr19	35978299	rs7976	C	T	754.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.500;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.91;ReadPosRankSum=0.558;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:144,49:0.25:193
chr19	35978458	rs17638216	G	A	737.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:122,44:0.27:166
chr19	35978567	rs62111717	T	C	1170.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:148,68:0.31:216
chr19	35979696	rs10410228	C	T	1153.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.515;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=2.007;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.75;ReadPosRankSum=0.936;SOR=0.889;set=HC	GT:AD:AF:DP	0/1:107,64:0.37:171
chr19	35991043	rs11666154	G	T	1058.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:112,57:0.34:169
chr19	35991373	rs2293695	C	T	1162.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:139,68:0.33:207
chr19	35991442	rs909072	T	G	3393.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr19	35991516	rs79152633	C	T	572.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:18,23:0.56:41
chr19	35992691	rs8100640	A	G	4205.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.365;ClippingRankSum=0.000;DB;DP=734;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.79;ReadPosRankSum=-1.235;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:492,235:0.32:727
chr19	35993919	rs8107732	A	T	497.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:56,29:0.34:85
chr19	35994126	rs8106676	G	A	150.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:21,9:0.30:30
chr19	35994376	rs149163465	GTT	G	130.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.715;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=2.050;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.23;ReadPosRankSum=0.670;SOR=1.483;set=HC	GT:AD:AF:DP	0/1:19,6:0.24:25
chr19	35994384	rs3829678	T	G	182.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.216;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=2.066;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.95;ReadPosRankSum=0.246;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:17,6:0.26:23
chr19	35994386	rs79338830	T	G	285.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.266;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.99;ReadPosRankSum=1.557;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:8,14:0.64:22
chr19	35994390	rs3829677	T	G	197.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.138;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.41;ReadPosRankSum=-0.776;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:13,6:0.32:19
chr19	35999198	rs77995042	C	T	5514.77	.	AC=1;AF=0.500;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	0/1:137,251:0.65:388
chr19	36002418	rs72334573	GCCA	G	5425.73	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:75,150:0.67:225
chr19	36004106	rs4806163	A	G	27480.77	.	AC=2;AF=1.00;AN=2;DB;DP=1008;set=Intersection	GT:AD:AF:DP	1/1:4,996:1.00:1000
chr19	36015491	rs67543901	G	T	1282.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:34,56:0.62:90
chr19	36015521	rs58183088	C	T	1059.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:81,53:0.40:134
chr19	36015652	rs17705633	C	T	2452.77	.	AC=1;AF=0.500;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	0/1:280,138:0.33:418
chr19	36015865	rs2285511	A	C	1986.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr19	36017469	rs62113963	C	T	210.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.189;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.02;ReadPosRankSum=2.127;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:18,17:0.49:35
chr19	36017928	rs10775583	G	C	7429.77	.	AC=1;AF=0.500;AN=2;DB;DP=1041;MQ=59.99;set=Intersection	GT:AD:AF:DP	0/1:647,381:0.37:1028
chr19	36018407	.	T	C	3711.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.948;ClippingRankSum=0.000;DP=931;ExcessHet=3.0103;FS=1.507;MLEAC=1;MLEAF=0.500;MQ=59.38;MQRankSum=-1.584;QD=4.07;ReadPosRankSum=-5.352;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:755,156:0.17:911
chr19	36018413	rs368150998	T	A	3450.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.232;ClippingRankSum=0.000;DB;DP=936;ExcessHet=3.0103;FS=4.997;MLEAC=1;MLEAF=0.500;MQ=59.41;MQRankSum=-1.789;QD=3.76;ReadPosRankSum=-6.201;SOR=1.004;set=HC	GT:AD:AF:DP	0/1:778,139:0.15:917
chr19	36033825	rs2293681	G	A	1589.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:201,93:0.32:294
chr19	36038390	rs7599	A	G	4135.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:2,149:0.99:151
chr19	36043871	rs62109961	C	T	296.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:36,14:0.28:50
chr19	36044524	rs2251124	G	A	1927.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr19	36045772	rs2733739	A	G	1205.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr19	36048741	rs2230181	G	T	2043.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.20;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr19	36048791	rs748214	G	A	307.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.426;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=2.754;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.20;ReadPosRankSum=-0.093;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:5,14:0.74:19
chr19	36050969	rs2733743	A	G	8666.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:1,320:1.00:321
chr19	36105917	rs34572637	A	G	8120.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr19	36113658	rs2285414	A	G	5699.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr19	36120241	rs183437527	C	G	3583.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:61,152:0.71:213
chr19	36122441	rs2285415	G	A	1794.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr19	36133982	rs3214104	TG	T	3335.73	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr19	36135279	rs3835005	C	CT	7713.73	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr19	36145409	.	C	CA	262.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.275;ClippingRankSum=0.000;DP=160;ExcessHet=3.0103;FS=0.802;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.592;QD=1.76;ReadPosRankSum=-0.574;SOR=0.791;set=HC	GT:AD:AF:DP	0/1:112,37:0.25:149
chr19	36157740	rs61741212	C	T	6087.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr19	36168914	rs2285421	T	C	5854.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr19	36213461	rs11084828	C	T	8165.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:1,311:1.00:312
chr19	36214632	rs11373774	A	AG	1942.73	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr19	36215779	rs141957853	G	GGGGTCTGGATCA	3141.73	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr19	36216043	rs11672164	A	G	11578.77	.	AC=2;AF=1.00;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	1/1:0,415:1.00:415
chr19	36217884	rs34515466	CA	C	114.06	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.343;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=3.328;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-0.309;QD=6.71;ReadPosRankSum=1.031;SOR=2.235;set=HC	GT:AD:AF:DP	0/1:3,14:0.82:17
chr19	36217957	rs3787051	A	G	3256.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr19	36218478	rs11670414	C	T	6965.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:2,240:0.99:242
chr19	36224705	rs231591	A	G	5687.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr19	36233470	rs3746278	G	A	9225.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:1,340:1.00:341
chr19	36234652	rs17638853	T	C	1965.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr19	36236000	rs2293687	C	A	6739.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr19	36236120	rs231597	A	G	20272.77	.	AC=2;AF=1.00;AN=2;DB;DP=719;set=Intersection	GT:AD:AF:DP	1/1:0,716:1.00:716
chr19	36243089	rs170758	T	C	8511.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:2,322:0.99:324
chr19	36243190	rs231244	T	C	7288.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr19	36243813	rs231243	G	A	9229.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:0,333:1.00:333
chr19	36248975	rs58561864	T	C	935.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr19	36250259	rs107878	C	T	3949.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr19	36253317	rs807479	C	T	3742.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr19	36257932	rs35876904	CCT	C	2340.73	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr19	36258937	rs5827939	AG	A	8795.73	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr19	36259480	rs113059159	C	CT	1566.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.106;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=1.887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.78;ReadPosRankSum=0.867;SOR=0.501;set=HC	GT:AD:AF:DP	0/1:35,98:0.74:133
chr19	36259494	rs231216	C	A	5439.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr19	36266365	rs77750939	G	A	203.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr19	36268923	rs807491	C	T	3663.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr19	36269915	rs231230	T	C	1393.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr19	36270052	rs231231	A	G	3021.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.05;SOR=0.763;set=HC	GT:AD:AF:DP	1/1:0,116:1.00:116
chr19	36273230	rs231223	C	G	1193.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:59,48:0.45:107
chr19	36273534	rs2291067	G	A	3636.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:68,151:0.69:219
chr19	36275074	rs62112163	G	A	2622.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:68,121:0.64:189
chr19	36276086	rs2239949	C	T	4955.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr19	36276403	rs120959	T	G	1832.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:150,95:0.39:245
chr19	36278470	rs231235	C	G	3060.77	.	AC=1;AF=0.500;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	0/1:219,158:0.42:377
chr19	36279862	rs59882609	AG	A	1390.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;MQ=60.24;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr19	36290900	rs1133745	C	G	779.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:7,26:0.79:33
chr19	36322509	rs466452	G	A	3459.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:66,145:0.69:211
chr19	36355595	rs382789	A	G	4540.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr19	36398454	rs111477177	G	C	2243.77	.	AC=1;AF=0.500;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	0/1:220,117:0.35:337
chr19	36486445	rs7249826	G	C	4626.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr19	36496121	rs10469279	A	G	1654.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:48,75:0.61:123
chr19	36497358	rs2285422	C	G	1897.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr19	36498279	.	G	C	1156.77	.	AC=1;AF=0.500;AN=2;DP=79;set=Intersection	GT:AD:AF:DP	0/1:28,50:0.64:78
chr19	36501445	rs2073894	C	T	4435.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:96,202:0.68:298
chr19	36508392	rs2073896	A	G	2385.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:49,91:0.65:140
chr19	36517655	rs10418015	C	T	4066.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr19	36526281	rs66987345	TATA	T	1564.73	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:92,45:0.33:137
chr19	36530332	rs10420353	G	A	1567.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:211,93:0.31:304
chr19	36530343	rs10421966	C	T	1845.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:230,107:0.32:337
chr19	36536938	rs7258807	A	G	1463.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr19	36558113	rs12608517	T	C	1571.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr19	36558712	rs10423651	C	T	192.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.221;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.10;ReadPosRankSum=-0.177;SOR=0.823;set=HC	GT:AD:AF:DP	0/1:34,13:0.28:47
chr19	36572251	.	C	CT	1111	.	AC=1;AF=0.500;AN=2;BRF=0.38;FR=0.5000;HP=11;HapScore=2;MGOF=15;MMLQ=23;MQ=59.99;NF=15;NR=7;PP=1111;QD=50.9090909091;SC=CTTTAACTTACTTTTTTTTTT;SbPval=0.7;Source=Platypus;TC=69;TCF=44;TCR=25;TR=22;WE=36572259;WS=36572241;set=Platypus	GT:AD:AF:DP	0/1:47,22:0.32:69
chr19	36572279	rs142105577	G	GTCATTTTC	749.73	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:115,26:0.18:141
chr19	36572564	rs7246292	T	C	1223.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:99,59:0.37:158
chr19	36574063	rs45567532	C	T	3622.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:78,160:0.67:238
chr19	36577579	rs4806263	C	T	2469.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:60,107:0.64:167
chr19	36581263	rs3746271	G	C	916.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.108;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=2.135;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.24;ReadPosRankSum=-1.368;SOR=0.494;set=HC	GT:AD:AF:DP	0/1:121,54:0.31:175
chr19	36582270	rs2301736	G	A	555.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:110,43:0.28:153
chr19	36583651	rs61494900	G	A	6884.77	.	AC=1;AF=0.500;AN=2;DB;DP=469;set=Intersection	GT:AD:AF:DP	0/1:157,308:0.66:465
chr19	36585174	rs62109756	G	A	317.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:11,14:0.56:25
chr19	36590329	rs2285745	T	C	5325.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr19	36592752	rs2311004	G	T	965.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:83,49:0.37:132
chr19	36594063	rs17851502	C	T	5792.77	.	AC=1;AF=0.500;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	0/1:143,247:0.63:390
chr19	36594659	rs2074435	A	T	20723.77	.	AC=2;AF=1.00;AN=2;DB;DP=769;set=Intersection	GT:AD:AF:DP	1/1:0,757:1.00:757
chr19	36594853	rs17851503	G	A	2986.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:69,121:0.64:190
chr19	36595436	rs1008328	A	C	10948.77	.	AC=2;AF=1.00;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	1/1:0,392:1.00:392
chr19	36602729	rs1003470	G	C	1790.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:186,100:0.35:286
chr19	36603703	rs2072605	T	A	2295.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr19	36605647	rs2227260	T	C	8639.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:2,322:0.99:324
chr19	36605794	rs2231568	C	T	1825.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:1,65:0.98:66
chr19	36606379	rs199646187	C	CCAG	1335.73	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:16,35:0.69:51
chr19	36612396	rs2075474	A	G	6283.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr19	36632024	.	G	GGGC	1173.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.478;ClippingRankSum=0.000;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.51;MQRankSum=1.878;QD=18.93;ReadPosRankSum=1.637;SOR=0.764;set=HC	GT:AD:AF:DP	0/1:28,34:0.55:62
chr19	36632060	rs11084845	T	A	482.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.105;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.48;MQRankSum=-1.441;QD=5.82;ReadPosRankSum=-0.940;SOR=0.796;set=HC	GT:AD:AF:DP	0/1:55,28:0.34:83
chr19	36640769	rs14100	T	C	3343.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr19	36642310	rs2008683	T	C	4461.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr19	36642561	.	G	GC	3116.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.644;ClippingRankSum=0.000;DP=197;ExcessHet=3.0103;FS=15.601;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.12;ReadPosRankSum=1.485;SOR=2.092;set=HC	GT:AD:AF:DP	0/1:83,89:0.52:172
chr19	36642562	rs2285599	A	C	3223.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:84,91:0.52:175
chr19	36642884	rs17879437	T	C	1229.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:28,57:0.67:85
chr19	36685753	rs7259854	A	G	652.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:14,25:0.64:39
chr19	36727365	rs2070132	G	A	10369.77	.	AC=2;AF=1.00;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	1/1:2,390:0.99:392
chr19	36858944	rs11084857	A	G	1266.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:29,53:0.65:82
chr19	36885067	rs17206365	A	T	1355.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:38,61:0.62:99
chr19	36940760	rs2967532	G	T	3195.77	.	AC=1;AF=0.500;AN=2;DB;DP=623;set=Intersection	GT:AD:AF:DP	0/1:432,186:0.30:618
chr19	36940965	rs2912441	A	G	338.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:34,17:0.33:51
chr19	36964376	rs2967540	C	T	2226.77	.	AC=1;AF=0.500;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	0/1:249,127:0.34:376
chr19	36967352	rs150830509	T	TTTTC	735.73	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:36,21:0.37:57
chr19	36981218	rs2967473	G	A	3808.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr19	37004938	rs2967505	T	C	1463.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:129,76:0.37:205
chr19	37038092	rs2278168	T	C	2478.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:55,105:0.66:160
chr19	37039069	rs2912444	A	C	14662.77	.	AC=2;AF=1.00;AN=2;DB;DP=568;set=Intersection	GT:AD:AF:DP	1/1:0,558:1.00:558
chr19	37063218	rs11448179	C	CA	2363.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.391;ClippingRankSum=0.000;DB;DP=278;ExcessHet=3.0103;FS=4.869;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=1.834;QD=8.92;ReadPosRankSum=2.562;SOR=1.038;set=HC	GT:AD:AF:DP	0/1:100,165:0.62:265
chr19	37064240	rs2967442	A	G	4539.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr19	37064267	rs3096618	C	T	1318.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:138,75:0.35:213
chr19	37065732	rs2912406	A	C	2555.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:43,118:0.73:161
chr19	37065914	rs3108597	G	A	51.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.243;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.85;ReadPosRankSum=0.000;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:23,5:0.18:28
chr19	37068081	rs2912410	G	C	1138.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr19	37068235	rs3108598	T	C	431.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.103;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.96;ReadPosRankSum=-1.709;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:79,30:0.28:109
chr19	37117302	rs3108171	A	G	3841.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:85,163:0.66:248
chr19	37118439	rs61732180	C	T	3799.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:115,176:0.60:291
chr19	37134864	rs62112477	C	T	287.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:4,11:0.73:15
chr19	37147330	rs12981751	T	G	2063.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:51,89:0.64:140
chr19	37185813	rs36094586	CT	C	241.80	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.568;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=2.034;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.06;ReadPosRankSum=0.586;SOR=0.292;set=HC	GT:AD:AF:DP	0/1:5,25:0.83:30
chr19	37203249	rs1830031	T	C	1215.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:38,51:0.57:89
chr19	37210529	rs3108200	A	G	4311.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:91,183:0.67:274
chr19	37210805	rs3108201	C	T	6517.77	.	AC=1;AF=0.500;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	0/1:134,281:0.68:415
chr19	37238537	.	C	CA	54.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.304;ClippingRankSum=0.000;DP=51;ExcessHet=3.0103;FS=1.307;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=1.634;QD=1.16;ReadPosRankSum=-0.167;SOR=0.923;set=HC	GT:AD:AF:DP	0/1:35,12:0.26:47
chr19	37239278	rs11672680	C	A	2961.77	.	AC=1;AF=0.500;AN=2;DB;DP=498;set=Intersection	GT:AD:AF:DP	0/1:336,157:0.32:493
chr19	37241141	rs1673082	A	G	10402.77	.	AC=2;AF=1.00;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	1/1:2,380:0.99:382
chr19	37241781	rs2462576	G	A	927.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:19,34:0.64:53
chr19	37310344	rs3745775	T	C	1207.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:194,72:0.27:266
chr19	37440363	rs17242235	G	A	113.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:8,6:0.43:14
chr19	37641650	rs371643138	GA	G	52.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.811;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.82;ReadPosRankSum=-0.826;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:19,10:0.34:29
chr19	37689998	rs12459637	C	T	975.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:170,64:0.27:234
chr19	37690375	rs73023557	C	T	2048.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:45,89:0.66:134
chr19	37690420	rs1234250	C	T	4896.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr19	37721404	rs56895666	T	TA	1004.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.676;ClippingRankSum=0.000;DB;DP=208;ExcessHet=3.0103;FS=2.494;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.13;ReadPosRankSum=0.739;SOR=0.964;set=HC	GT:AD:AF:DP	0/1:85,79:0.48:164
chr19	37726433	rs320880	G	A	4187.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:99,186:0.65:285
chr19	37733771	rs12974332	A	C	677.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:83,33:0.28:116
chr19	37854580	rs3745764	C	T	1516.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.963;ClippingRankSum=0.000;DB;DP=447;ExcessHet=3.0103;FS=2.100;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.47;ReadPosRankSum=0.536;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:331,106:0.24:437
chr19	37864925	rs61161652	A	AC	1991.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr19	37879852	rs376931538	C	CTGTG	7539.73	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:95,187:0.66:282
chr19	37879854	rs200420244	AT	A	7536.73	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:97,182:0.65:279
chr19	37918609	rs7254009	C	T	197.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:3,8:0.73:11
chr19	37958973	rs35295578	GT	G	831.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.800;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=12.887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.79;ReadPosRankSum=-0.852;SOR=2.468;set=HC	GT:AD:AF:DP	0/1:22,63:0.74:85
chr19	37966661	rs1236810	A	G	309.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:12,15:0.56:27
chr19	37966710	rs150427400	C	G	396.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:43,24:0.36:67
chr19	37966923	rs4801803	C	T	271.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:35,16:0.31:51
chr19	37967214	rs7253091	C	T	522.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:42,27:0.39:69
chr19	38022358	rs10404945	T	C	165.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.012;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=4.424;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.86;ReadPosRankSum=-1.641;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:44,14:0.24:58
chr19	38024367	rs2279149	T	C	1031.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:93,53:0.36:146
chr19	38027957	rs45593644	A	G	5428.77	.	AC=1;AF=0.500;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	0/1:103,222:0.68:325
chr19	38028813	rs369737171	AT	A	73.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.495;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=3.358;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.05;ReadPosRankSum=-0.026;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:24,12:0.33:36
chr19	38033251	rs9797618	C	T	677.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr19	38040076	rs1564206	C	T	4575.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr19	38046967	rs10420552	G	A	3946.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr19	38047075	rs10420268	A	G	2915.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr19	38055612	rs4802029	A	T	8762.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:0,330:1.00:330
chr19	38056574	rs28512414	T	A	3243.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr19	38077661	rs8111055	G	A	6576.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr19	38091932	rs1975937	A	T	6272.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr19	38202516	rs2909097	A	C	5176.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.41;SOR=0.777;set=HC	GT:AD:AF:DP	1/1:0,196:1.00:196
chr19	38230581	rs80333275	G	A	2792.77	.	AC=1;AF=0.500;AN=2;DB;DP=482;set=Intersection	GT:AD:AF:DP	0/1:319,159:0.33:478
chr19	38314767	rs2305105	A	G	5350.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr19	38315076	.	T	C	7115.77	.	AC=1;AF=0.500;AN=2;DP=510;set=Intersection	GT:AD:AF:DP	0/1:173,323:0.65:496
chr19	38376485	rs10408510	T	A	10113.77	.	AC=2;AF=1.00;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	1/1:0,368:1.00:368
chr19	38377409	rs7252765	A	T	3216.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.97;QD=27.97;SOR=1.322;set=HC	GT:AD:AF:DP	1/1:0,115:1.00:115
chr19	38377564	rs7253969	T	C	21064.77	.	AC=2;AF=1.00;AN=2;DB;DP=803;set=Intersection	GT:AD:AF:DP	1/1:0,784:1.00:784
chr19	38377773	rs34785154	G	A	13658.77	.	AC=2;AF=1.00;AN=2;DB;DP=507;set=Intersection	GT:AD:AF:DP	1/1:0,494:1.00:494
chr19	38378107	rs60704260	G	A	16020.77	.	AC=2;AF=1.00;AN=2;DB;DP=595;MQ=60.02;set=Intersection	GT:AD:AF:DP	1/1:3,582:0.99:585
chr19	38378539	rs10422056	G	C	14898.77	.	AC=2;AF=1.00;AN=2;DB;DP=522;set=Intersection	GT:AD:AF:DP	1/1:0,512:1.00:512
chr19	38379446	rs6508750	C	T	16234.77	.	AC=2;AF=1.00;AN=2;DB;DP=583;set=Intersection	GT:AD:AF:DP	1/1:0,578:1.00:578
chr19	38382328	rs953370	C	T	8519.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr19	38384421	rs3894129	C	G	5867.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr19	38621473	rs861304	G	A	1043.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:126,57:0.31:183
chr19	38652993	rs332864	C	T	3978.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr19	38655643	.	A	C	68.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.369;ClippingRankSum=0.000;DP=79;ExcessHet=3.0103;FS=17.938;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.88;ReadPosRankSum=0.503;SOR=4.047;set=HC	GT:AD:AF:DP	0/1:57,21:0.27:78
chr19	38673126	rs3833273	GT	G	739.73	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:65,49:0.43:114
chr19	38697054	rs3745946	G	A	463.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr19	38706989	rs2278431	G	A	7079.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr19	38708398	rs2304175	A	C	4069.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr19	38709568	rs2255456	C	T	20247.77	.	AC=2;AF=1.00;AN=2;DB;DP=748;set=Intersection	GT:AD:AF:DP	1/1:0,742:1.00:742
chr19	38742846	rs12983492	G	A	383.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:47,20:0.30:67
chr19	38779912	rs3745949	A	G	414.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:28,19:0.40:47
chr19	38794895	rs2304176	T	C	1263.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:122,68:0.36:190
chr19	38795550	rs147127327	G	GAAGAAGGAGAAGGGC	2135.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.545;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=4.687;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.564;QD=11.18;ReadPosRankSum=0.956;SOR=1.082;set=HC	GT:AD:AF:DP	0/1:135,56:0.29:191
chr19	38795952	.	CCAG	C	147.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.734;ClippingRankSum=0.000;DP=75;ExcessHet=3.0103;FS=3.175;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.02;ReadPosRankSum=1.495;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:64,9:0.12:73
chr19	38798028	rs79603054	C	T	1533.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:186,90:0.33:276
chr19	38798086	rs3178327	T	C	2670.77	.	AC=1;AF=0.500;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	0/1:274,149:0.35:423
chr19	38800176	rs11556992	G	A	716.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:114,44:0.28:158
chr19	38806331	rs11672826	G	C	3600.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:96,162:0.63:258
chr19	38817110	rs7250755	A	G	2668.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr19	38826947	rs56849284	T	C	688.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:92,42:0.31:134
chr19	38835158	rs79570957	T	C	249.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:18,14:0.44:32
chr19	38847431	rs2286475	T	C	1044.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:104,55:0.35:159
chr19	38848861	rs8106895	C	G	1126.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:111,57:0.34:168
chr19	38850246	rs60071299	G	A	514.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.830;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=5.767;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.03;ReadPosRankSum=0.315;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:34,23:0.40:57
chr19	38852453	rs3745954	C	T	3752.77	.	AC=1;AF=0.500;AN=2;DB;DP=656;set=Intersection	GT:AD:AF:DP	0/1:441,207:0.32:648
chr19	38858433	rs2302186	C	T	1251.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:99,64:0.39:163
chr19	38861333	rs1052375	G	A	4752.77	.	AC=1;AF=0.500;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	0/1:127,219:0.63:346
chr19	38865636	rs12608599	G	C	691.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:76,38:0.33:114
chr19	38867121	rs2302227	G	A	500.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:45,26:0.37:71
chr19	38876352	rs56854837	G	A	1404.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:218,83:0.28:301
chr19	38876464	rs11083455	C	G	388.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.486;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=4.375;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.70;ReadPosRankSum=-1.522;SOR=0.508;set=HC	GT:AD:AF:DP	0/1:80,25:0.24:105
chr19	38877997	rs62123482	G	T	2251.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:26,92:0.78:118
chr19	38880976	.	G	T	803.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.650;ClippingRankSum=0.000;DP=182;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.52;ReadPosRankSum=0.558;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:124,54:0.30:178
chr19	38882781	rs12609878	T	G	1054.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:108,59:0.35:167
chr19	38884909	rs79210197	A	T	841.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:60,45:0.43:105
chr19	38893856	rs3745957	G	C	881.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:126,54:0.30:180
chr19	38893924	rs3745958	A	G	1029.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:135,58:0.30:193
chr19	38893935	rs3745959	C	T	844.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:126,51:0.29:177
chr19	38912597	rs4310986	G	A	305.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:59,21:0.26:80
chr19	38912764	rs892055	A	G	1769.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:177,97:0.35:274
chr19	38931673	rs2304146	G	A	54.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.564;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=2.114;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.28;ReadPosRankSum=-0.581;SOR=0.768;set=HC	GT:AD:AF:DP	0/1:19,5:0.21:24
chr19	38933120	rs3745843	G	A	722.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.368;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=2.743;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.05;ReadPosRankSum=1.444;SOR=1.029;set=HC	GT:AD:AF:DP	0/1:104,39:0.27:143
chr19	38935280	rs2229139	A	G	6673.77	.	AC=1;AF=0.500;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	0/1:155,289:0.65:444
chr19	38935350	rs35018208	T	TC	8848.73	.	AC=1;AF=0.500;AN=2;DB;DP=661;set=Intersection	GT:AD:AF:DP	0/1:219,419:0.66:638
chr19	38939408	rs10406027	T	C	3226.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr19	38939505	rs4476278	T	C	878.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr19	38942714	rs4802469	G	A	1371.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr19	38943728	rs12460768	G	A	1363.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:14,53:0.79:67
chr19	38945851	rs7254832	T	C	4184.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr19	38946182	rs2288888	G	A	8873.77	.	AC=1;AF=0.500;AN=2;DB;DP=623;set=Intersection	GT:AD:AF:DP	0/1:214,392:0.65:606
chr19	38946215	rs2288889	G	C	6046.77	.	AC=1;AF=0.500;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	0/1:141,275:0.66:416
chr19	38948356	rs2071085	T	C	4104.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:89,184:0.67:273
chr19	38948963	rs2071086	C	G	5154.77	.	AC=1;AF=0.500;AN=2;DB;DP=919;set=Intersection	GT:AD:AF:DP	0/1:608,301:0.33:909
chr19	38949904	rs3745847	C	T	2416.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:56,115:0.67:171
chr19	38950947	rs2304147	C	T	3393.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:51,134:0.72:185
chr19	38953996	rs2304148	A	G	4847.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr19	38956803	rs2228069	G	A	5837.77	.	AC=1;AF=0.500;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	0/1:99,260:0.72:359
chr19	38956839	rs2228070	C	T	1259.77	.	AC=1;AF=0.500;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	0/1:260,90:0.26:350
chr19	38959680	rs11083462	C	T	2441.77	.	AC=1;AF=0.500;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	0/1:289,138:0.32:427
chr19	38983000	.	CA	C	105.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.999;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=8.609;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.35;ReadPosRankSum=0.544;SOR=0.054;set=HC	GT:AD:AF:DP	0/1:27,18:0.40:45
chr19	38990336	rs2228071	C	T	607.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.700;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=3.445;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.20;ReadPosRankSum=-1.489;SOR=0.375;set=HC	GT:AD:AF:DP	0/1:77,21:0.21:98
chr19	38990345	rs2229147	C	T	563.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.057;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.53;ReadPosRankSum=-0.809;SOR=0.497;set=HC	GT:AD:AF:DP	0/1:82,20:0.20:102
chr19	38990676	rs2234709	C	A	1716.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:176,96:0.35:272
chr19	38991640	rs2960323	C	G	1555.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:144,82:0.36:226
chr19	38993372	rs1469695	A	G	1588.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.691;ClippingRankSum=0.000;DB;DP=269;ExcessHet=3.0103;FS=3.348;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=-1.879;QD=6.46;ReadPosRankSum=-0.592;SOR=0.966;set=HC	GT:AD:AF:DP	0/1:172,74:0.30:246
chr19	38993391	.	TGGGGCAGGGGCAGGGGCA	T	1808.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.440;ClippingRankSum=0.000;DP=205;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.42;MQRankSum=2.279;QD=23.80;ReadPosRankSum=-1.588;SOR=1.349;set=HC	GT:AD:AF:DP	0/1:28,48:0.63:76
chr19	38993430	.	GGCAGGGGCAGGGGCAGGGGGAGGA	G	1577.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150;ClippingRankSum=0.000;DP=170;ExcessHet=3.0103;FS=1.890;MLEAC=1;MLEAF=0.500;MQ=60.51;MQRankSum=-1.982;QD=10.52;ReadPosRankSum=-2.248;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:102,48:0.32:150
chr19	38993547	rs2229142	C	T	2798.77	.	AC=1;AF=0.500;AN=2;DB;DP=528;set=Intersection	GT:AD:AF:DP	0/1:357,158:0.31:515
chr19	38993638	rs1469699	A	G	3158.77	.	AC=1;AF=0.500;AN=2;DB;DP=564;set=Intersection	GT:AD:AF:DP	0/1:370,185:0.33:555
chr19	38994910	rs2229144	G	A	1318.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:133,75:0.36:208
chr19	38995152	rs2915949	G	A	186.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:15,9:0.38:24
chr19	38995355	rs10532729	ACCT	A	1626.73	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:77,47:0.38:124
chr19	38995438	rs2960340	T	C	2224.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:222,117:0.35:339
chr19	38995510	rs2915951	T	C	2762.77	.	AC=1;AF=0.500;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	0/1:283,152:0.35:435
chr19	38995975	rs2915952	G	A	285.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:57,20:0.26:77
chr19	38996066	rs2915953	A	G	124.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:63,14:0.18:77
chr19	38996640	.	A	G	48	.	AC=1;AF=0.500;AN=2;BRF=0.41;FR=0.5000;HP=1;HapScore=2;MGOF=29;MMLQ=27;MQ=60.0;NF=2;NR=6;PP=48;QD=10.3464015684;SC=AGGGTCTAGAACAAGGGGCAT;SbPval=0.55;Source=Platypus;TC=32;TCF=7;TCR=25;TR=8;WE=38996648;WS=38996630;set=Platypus	GT:AD:AF:DP	0/1:24,8:0.25:32
chr19	38996990	rs2229146	T	C	1680.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:202,95:0.32:297
chr19	38997076	rs2960344	C	T	1838.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.268;ClippingRankSum=0.000;DB;DP=409;ExcessHet=3.0103;FS=2.824;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.53;ReadPosRankSum=0.234;SOR=0.909;set=HC	GT:AD:AF:DP	0/1:294,112:0.28:406
chr19	38997214	rs2960345	T	G	1057.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:114,54:0.32:168
chr19	38997323	rs2915957	T	C	1036.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:68,51:0.43:119
chr19	38997364	rs35973146	T	TTCA	2588.73	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:90,69:0.43:159
chr19	38997459	rs2915958	G	C	1122.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:154,66:0.30:220
chr19	38997609	rs2915959	T	A	147.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.335;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=1.250;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.38;ReadPosRankSum=2.627;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:49,13:0.21:62
chr19	38997635	rs2960346	A	C	115.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:34,9:0.21:43
chr19	38998497	rs5828009	G	GC	250.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.693;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=4.611;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=2.135;QD=2.56;ReadPosRankSum=0.197;SOR=1.468;set=HC	GT:AD:AF:DP	0/1:80,18:0.18:98
chr19	39002725	rs2071089	A	G	2243.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.887;ClippingRankSum=0.000;DB;DP=464;ExcessHet=3.0103;FS=1.216;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.90;ReadPosRankSum=0.209;SOR=0.824;set=HC	GT:AD:AF:DP	0/1:318,140:0.31:458
chr19	39008003	rs2304151	G	A	555.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.778;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=1.488;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.35;ReadPosRankSum=-1.068;SOR=0.884;set=HC	GT:AD:AF:DP	0/1:126,40:0.24:166
chr19	39051680	.	T	TA	197.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.483;ClippingRankSum=0.000;DP=85;ExcessHet=3.0103;FS=3.457;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=1.797;QD=2.64;ReadPosRankSum=-0.032;SOR=0.208;set=HC	GT:AD:AF:DP	0/1:51,24:0.32:75
chr19	39104437	rs41274338	A	G	508.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:18,24:0.57:42
chr19	39138608	rs2303040	T	C	157.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.109;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=1.718;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.57;ReadPosRankSum=2.421;SOR=0.340;set=HC	GT:AD:AF:DP	0/1:14,10:0.42:24
chr19	39191383	rs2112649	G	C	6067.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr19	39191544	rs73038909	G	A	881.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:15,36:0.71:51
chr19	39196736	rs11553600	G	A	3731.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:116,173:0.60:289
chr19	39196745	rs3745859	C	T	2185.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:185,120:0.39:305
chr19	39212392	rs77822825	C	T	4815.77	.	AC=1;AF=0.500;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	0/1:120,216:0.64:336
chr19	39214633	rs139575917	C	T	6201.77	.	AC=1;AF=0.500;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	0/1:164,271:0.62:435
chr19	39215333	rs3786851	C	T	220.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:24,11:0.31:35
chr19	39219780	rs1136956	T	C	4020.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:142,180:0.56:322
chr19	39221715	rs141208726	CCCATGCCCCA	C	4432.73	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:33,110:0.77:143
chr19	39224413	rs4801861	A	G	9578.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:0,354:1.00:354
chr19	39226596	.	GGTTCT	G	158	.	AC=1;AF=0.500;AN=2;BRF=0.39;FR=0.5000;HP=4;HapScore=4;MGOF=127;MMLQ=24;MQ=55.13;NF=4;NR=0;PP=158;QD=43.75;SC=GCGGGGCGGGGGTTCTGGGGG;SbPval=1.0;Source=Platypus;TC=4;TCF=4;TCR=0;TR=4;WE=39226610;WS=39226594;set=Platypus	GT:AD:AF:DP	1/0:0,4:1.00:4
chr19	39226602	.	G	C	173	.	AC=1;AF=0.500;AN=2;BRF=0.39;FR=0.5000;HP=4;HapScore=4;MGOF=127;MMLQ=24;MQ=55.61;NF=4;NR=0;PP=173;QD=51.9428031368;SC=CGGGGGTTCTGGGGGCGGGGC;SbPval=1.0;Source=Platypus;TC=9;TCF=6;TCR=3;TR=4;WE=39226610;WS=39226594;set=Platypus	GT:AD:AF:DP	1/0:5,4:0.44:9
chr19	39226648	.	AGGTCTCGGGGGTCTCGGG	A	657	.	AC=2;AF=1.00;AN=2;BRF=0.45;FR=1.0000;HP=2;HapScore=1;MGOF=45;MMLQ=24;MQ=58.75;NF=1;NR=0;PP=657;QD=667.0;SC=GGGGCAGGTCAGGTCTCGGGG;SbPval=1.0;Source=Platypus;TC=5;TCF=5;TCR=0;TR=1;WE=39226673;WS=39226638;set=Platypus	GT:AD:AF:DP	1/1:4,1:0.20:5
chr19	39227107	rs202243527	TTTGACCAAGCCCCAGGGCAGG	T	1340.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.409;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=7.865;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.54;ReadPosRankSum=2.008;SOR=1.049;set=HC	GT:AD:AF:DP	0/1:110,47:0.30:157
chr19	39228244	rs73038948	T	C	6167.77	.	AC=1;AF=0.500;AN=2;DB;DP=462;set=Intersection	GT:AD:AF:DP	0/1:171,288:0.63:459
chr19	39228868	rs34488364	G	GCA	322.75	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr19	39233146	rs936524	A	G	5615.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:1,209:1.00:210
chr19	39234511	rs4802775	C	T	854.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:25,34:0.58:59
chr19	39279713	rs4802853	A	G	270.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr19	39279824	rs113106533	C	A	71.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=23.76;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr19	39281540	rs147201724	T	A	40.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.50;QD=20.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr19	39294033	rs73933059	C	T	281.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:24,15:0.38:39
chr19	39303434	rs73933062	C	T	866.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:58,45:0.44:103
chr19	39306425	rs2075588	A	C	2253.77	.	AC=1;AF=0.500;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	0/1:273,134:0.33:407
chr19	39307612	rs45561337	C	G	5499.77	.	AC=1;AF=0.500;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	0/1:139,259:0.65:398
chr19	39307893	rs73933065	G	C	729.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:79,35:0.31:114
chr19	39308190	rs15570	C	T	2040.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:217,112:0.34:329
chr19	39321899	rs73930206	G	A	4123.77	.	AC=1;AF=0.500;AN=2;DB;DP=686;set=Intersection	GT:AD:AF:DP	0/1:442,229:0.34:671
chr19	39322087	rs9419	T	G	6222.77	.	AC=1;AF=0.500;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	0/1:141,265:0.65:406
chr19	39322414	rs117820732	G	T	3169.77	.	AC=1;AF=0.500;AN=2;DB;DP=527;set=Intersection	GT:AD:AF:DP	0/1:338,175:0.34:513
chr19	39328145	rs2278010	A	C	4090.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:101,176:0.64:277
chr19	39329517	rs8111670	C	T	965.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:67,47:0.41:114
chr19	39330645	rs77994052	G	A	700.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:67,36:0.35:103
chr19	39334811	rs2278011	T	A	2643.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr19	39334830	rs2278012	C	T	2080.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr19	39338125	rs862454	G	A	4208.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:99,184:0.65:283
chr19	39338142	rs862455	A	G	6454.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr19	39360720	rs8110393	G	A	2280.77	.	AC=1;AF=0.500;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	0/1:237,113:0.32:350
chr19	39364415	rs6508823	C	T	100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.778;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=1.829;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.34;ReadPosRankSum=-0.993;SOR=1.162;set=HC	GT:AD:AF:DP	0/1:35,8:0.19:43
chr19	39364584	rs61747761	C	T	650.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:87,40:0.31:127
chr19	39366899	rs1529713	A	G	1759.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:189,101:0.35:290
chr19	39372244	rs2082435	C	G	990.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.617;ClippingRankSum=0.000;DB;DP=203;ExcessHet=3.0103;FS=3.759;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=-0.647;QD=5.08;ReadPosRankSum=0.990;SOR=0.438;set=HC	GT:AD:AF:DP	0/1:136,59:0.30:195
chr19	39380030	rs11667030	CA	TG	2807.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;JOINED;set=Intersection	GT:AD:AF:DP	0/1:128,77:0.38:205
chr19	39381338	.	GA	G	83.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.730;ClippingRankSum=0.000;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.75;ReadPosRankSum=-0.504;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:83,29:0.26:112
chr19	39385532	rs10410544	T	C	17748.77	.	AC=2;AF=1.00;AN=2;DB;DP=666;set=Intersection	GT:AD:AF:DP	1/1:1,660:1.00:661
chr19	39390931	rs2053071	C	G	1094.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:142,64:0.31:206
chr19	39399277	rs3136646	C	T	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.412;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.09;ReadPosRankSum=0.429;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:27,5:0.16:32
chr19	39400054	rs11404115	T	TA	3053.73	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:53,95:0.64:148
chr19	39402455	rs76973734	C	G	1352.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:41,62:0.60:103
chr19	39406442	rs11670675	G	A	1018.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:139,62:0.31:201
chr19	39407014	rs4801945	C	A	4266.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr19	39408360	rs7508411	A	G	1764.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr19	39408688	rs4803034	C	G	6030.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr19	39409236	rs11083489	C	A	2933.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:2,107:0.98:109
chr19	39409637	rs12459197	C	T	661.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:8,28:0.78:36
chr19	39416887	rs11544093	C	T	5570.77	.	AC=1;AF=0.500;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	0/1:125,250:0.67:375
chr19	39416966	rs4803045	GA	TT	1144.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.234;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=2.560;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.77;ReadPosRankSum=-1.389;SOR=0.950;set=HC	GT:AD:AF:DP	0/1:131,38:0.22:169
chr19	39421388	rs730078	A	G	5238.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr19	39433136	rs77963530	C	CA	847.73	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:24,27:0.53:51
chr19	39433299	rs8113389	A	G	10008.77	.	AC=2;AF=1.00;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	1/1:0,384:1.00:384
chr19	39433497	rs11313800	GT	G	3517.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr19	39433499	rs57290038	T	G	3526.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr19	39435485	rs10416055	G	A	1019.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr19	39435933	rs11672849	C	G	2618.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr19	39437258	rs10568003	TCA	T	8121.73	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:115,203:0.64:318
chr19	39437270	rs2278412	G	A	12030.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr19	39437411	rs2278413	G	T	226.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:36,13:0.27:49
chr19	39440918	rs2304117	T	C	3904.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:2,153:0.99:155
chr19	39440966	rs2304118	T	C	2538.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr19	39443577	rs12608890	A	T	3059.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr19	39522891	rs3848623	T	C	1084.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr19	39589334	rs560364	G	A	752.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:114,47:0.29:161
chr19	39589869	rs11326424	CG	C	579.73	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:28,23:0.45:51
chr19	39590955	rs8110736	G	A	2303.77	.	AC=1;AF=0.500;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	0/1:247,131:0.35:378
chr19	39660277	rs75096376	C	T	2810.77	.	AC=1;AF=0.500;AN=2;DB;DP=492;set=Intersection	GT:AD:AF:DP	0/1:323,165:0.34:488
chr19	39687592	rs12462614	T	C	295.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:6,13:0.68:19
chr19	39688815	rs12610064	C	T	3370.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:79,151:0.66:230
chr19	39688901	rs12610093	G	T	3300.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:63,148:0.70:211
chr19	39689943	rs12610530	G	A	1440.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:26,61:0.70:87
chr19	39691136	rs11672471	C	A	3964.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:109,174:0.61:283
chr19	39691216	rs11672475	A	T	7790.77	.	AC=1;AF=0.500;AN=2;DB;DP=526;set=Intersection	GT:AD:AF:DP	0/1:189,332:0.64:521
chr19	39691239	rs11672479	A	G	8993.77	.	AC=1;AF=0.500;AN=2;DB;DP=624;set=Intersection	GT:AD:AF:DP	0/1:205,410:0.67:615
chr19	39734220	rs4803217	C	A	2330.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:45,98:0.69:143
chr19	39734923	rs11881222	A	G	3509.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:54,131:0.71:185
chr19	39735106	rs8103142	T	C	823.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.584;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.06;MQRankSum=-2.890;QD=15.25;ReadPosRankSum=-1.298;SOR=0.829;set=HC	GT:AD:AF:DP	0/1:15,39:0.72:54
chr19	39735644	rs28416813	C	G	3220.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:93,141:0.60:234
chr19	39745695	rs35963157	G	GC	7369.73	.	AC=1;AF=0.500;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	0/1:169,231:0.58:400
chr19	39745812	rs78605718	C	T	6231.77	.	AC=1;AF=0.500;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	0/1:129,274:0.68:403
chr19	39759918	rs62120533	T	G	2008.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.240;ClippingRankSum=0.000;DB;DP=522;ExcessHet=3.0103;FS=0.588;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=-0.885;QD=3.88;ReadPosRankSum=0.703;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:375,143:0.28:518
chr19	39759974	rs117789288	T	C	2199.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.701;ClippingRankSum=0.000;DB;DP=552;ExcessHet=3.0103;FS=2.832;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=1.657;QD=4.04;ReadPosRankSum=-2.455;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:399,146:0.27:545
chr19	39760069	rs30481	G	C	6905.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr19	39847649	.	G	A	769.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.629;ClippingRankSum=0.000;DP=196;ExcessHet=3.0103;FS=1.307;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.03;ReadPosRankSum=1.055;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:142,49:0.26:191
chr19	39883264	rs11432802	C	CTT	285.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.167;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=2.008;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.40;ReadPosRankSum=0.069;SOR=1.230;set=HC	GT:AD:AF:DP	0/1:54,30:0.36:84
chr19	39884051	rs189240682	T	C	1044.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:19,42:0.69:61
chr19	39888390	rs1057745	G	C	3502.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:89,160:0.64:249
chr19	39888449	rs519575	C	T	850.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:90,45:0.33:135
chr19	39905903	rs3859551	A	G	2718.77	.	AC=1;AF=0.500;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	0/1:292,145:0.33:437
chr19	39906985	rs10401595	T	C	177.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:21,11:0.34:32
chr19	39907036	rs2277743	C	T	418.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:35,19:0.35:54
chr19	39907781	rs10402009	G	A	393.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:49,22:0.31:71
chr19	39908574	rs35466645	C	T	257.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:44,17:0.28:61
chr19	39913634	rs10407035	G	A	7034.77	.	AC=1;AF=0.500;AN=2;DB;DP=549;set=Intersection	GT:AD:AF:DP	0/1:209,324:0.61:533
chr19	39914308	rs31725	C	T	4082.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:105,188:0.64:293
chr19	39914331	rs116910532	G	A	4387.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:111,196:0.64:307
chr19	39914748	rs31726	G	A	14091.77	.	AC=1;AF=0.500;AN=2;DB;DP=880;set=Intersection	GT:AD:AF:DP	0/1:275,603:0.69:878
chr19	39914808	.	C	T	4522.77	.	AC=1;AF=0.500;AN=2;DP=875;set=Intersection	GT:AD:AF:DP	0/1:604,261:0.30:865
chr19	39915637	rs31727	G	A	4854.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:71,195:0.73:266
chr19	39915758	rs31728	C	G	5410.77	.	AC=1;AF=0.500;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	0/1:140,253:0.64:393
chr19	39916041	.	C	T	1335.77	.	AC=1;AF=0.500;AN=2;DP=212;set=Intersection	GT:AD:AF:DP	0/1:134,74:0.36:208
chr19	39916110	rs16746	GGGA	G	1576.73	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:25,41:0.62:66
chr19	39924129	rs566130	T	C	6821.77	.	AC=1;AF=0.500;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	0/1:142,300:0.68:442
chr19	39926509	rs17628	A	C	6873.77	.	AC=1;AF=0.500;AN=2;DB;DP=475;set=Intersection	GT:AD:AF:DP	0/1:145,320:0.69:465
chr19	39926521	rs17626	G	A	5597.77	.	AC=1;AF=0.500;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	0/1:120,248:0.67:368
chr19	39932023	rs1865090	T	C	1368.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:29,59:0.67:88
chr19	39932066	rs1865091	T	C	795.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:16,34:0.68:50
chr19	39936502	rs1932	G	A	7235.77	.	AC=1;AF=0.500;AN=2;DB;DP=486;set=Intersection	GT:AD:AF:DP	0/1:162,320:0.66:482
chr19	39936693	rs2116932	C	T	1112.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:27,44:0.62:71
chr19	39944082	rs1130180	C	T	2100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.231;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=1.353;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.01;ReadPosRankSum=0.127;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:51,99:0.66:150
chr19	39948871	rs376659194	CCCA	C	1317.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.478;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.830;QD=12.20;ReadPosRankSum=0.622;SOR=0.323;set=HC	GT:AD:AF:DP	0/1:67,41:0.38:108
chr19	39949764	rs1529733	C	T	2899.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.197;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=0.575;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.72;ReadPosRankSum=1.005;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:60,137:0.70:197
chr19	39963828	rs45568533	T	A	8022.77	.	AC=1;AF=0.500;AN=2;DB;DP=553;set=Intersection	GT:AD:AF:DP	0/1:198,347:0.64:545
chr19	39971622	rs2304221	C	G	403.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:6,18:0.75:24
chr19	39972766	rs62120691	G	A	2312.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:50,104:0.68:154
chr19	39976464	rs4803245	C	G	4191.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:92,179:0.66:271
chr19	39976734	rs4803247	G	A	1169.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:37,49:0.57:86
chr19	39976969	rs1865094	T	C	3499.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:93,158:0.63:251
chr19	39978610	rs74178079	GTGTA	G	2783.73	.	AC=1;AF=0.500;AN=2;DB;DP=118;MQ=60.18;set=Intersection	GT:AD:AF:DP	0/1:40,71:0.64:111
chr19	39994711	rs1110627	T	C	1568.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:39,72:0.65:111
chr19	40007067	rs143879239	GTC	G	55.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.867;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=8.819;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=2.368;QD=1.80;ReadPosRankSum=-1.968;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:26,5:0.16:31
chr19	40009396	rs56149652	A	G	6545.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr19	40009683	rs4802034	C	T	4867.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr19	40023308	rs1123301	A	G	9320.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:0,332:1.00:332
chr19	40030541	rs3746086	T	G	168.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.585;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.96;ReadPosRankSum=0.262;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:71,15:0.17:86
chr19	40030654	rs76765165	G	C	203.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.317;ClippingRankSum=0.000;DB;DP=249;ExcessHet=3.0103;FS=4.545;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.85;ReadPosRankSum=1.917;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:208,33:0.14:241
chr19	40093111	rs3764843	C	A	1255.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:92,64:0.41:156
chr19	40096127	rs2233709	C	T	95.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.206;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.82;ReadPosRankSum=2.175;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:26,8:0.24:34
chr19	40149297	rs1860134	T	A	5474.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr19	40149330	rs997104	G	C	1809.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:51,79:0.61:130
chr19	40170053	rs8103033	G	A	1833.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:65,92:0.59:157
chr19	40174119	rs1126159	C	T	4661.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:103,203:0.66:306
chr19	40174236	rs7258833	G	A	16030.77	.	AC=2;AF=1.00;AN=2;DB;DP=616;set=Intersection	GT:AD:AF:DP	1/1:0,606:1.00:606
chr19	40197924	rs4830	T	C	6090.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:1,234:1.00:235
chr19	40199914	rs10755	C	G	5201.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr19	40224833	rs375867	A	T	1513.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr19	40224869	rs391646	T	A	3653.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr19	40224887	rs391660	T	C	4691.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.00;SOR=2.397;set=HC	GT:AD:AF:DP	1/1:0,102:1.00:102
chr19	40224887	.	TGGAAGCCGGGTGCG	CGGAAGCCGGGTGCG,CGGAAGCTGGGTGCA	1328	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.33;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=33;MMLQ=24;MQ=60.0;NF=75,48;NR=19,13;PP=543,1328;QD=6.14650226114;SC=TGAGATCCCATGGAAGCCGGG;SbPval=0.53;Source=Platypus;TC=94;TCF=75;TCR=19;TR=94,61;WE=40224909;WS=40224877;set=Platypus	GT:AF:DP	0/1:1.00:94
chr19	40224894	rs2074927	C	T	1995.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.309;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.91;ReadPosRankSum=0.011;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:40,78:0.66:118
chr19	40224901	rs453827	G	A	5644.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.51;SOR=1.662;set=HC	GT:AD:AF:DP	1/1:0,136:1.00:136
chr19	40224986	rs384138	A	G	9029.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:2,333:0.99:335
chr19	40225168	rs399641	T	A	2694.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr19	40225646	rs17608	G	A	8847.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr19	40225790	rs76370710	C	T	1068.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:16,42:0.72:58
chr19	40318086	rs12977762	AG	GA	9175.77	.	AC=1;AF=0.500;AN=2;DB;DP=643;JOINED;set=Intersection	GT:AD:AF:DP	0/1:229,408:0.64:637
chr19	40328615	rs616650	C	T	566.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:7,21:0.75:28
chr19	40337080	rs11881344	C	T	459.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:16,19:0.54:35
chr19	40354067	rs2405	T	C	1890.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:186,101:0.35:287
chr19	40354576	rs2302523	C	A	834.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:100,43:0.30:143
chr19	40357247	rs887806	A	G	332.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:45,17:0.27:62
chr19	40357341	rs4436880	A	G	997.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.200;ClippingRankSum=0.000;DB;DP=301;ExcessHet=3.0103;FS=14.409;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.35;ReadPosRankSum=-0.144;SOR=1.459;set=HC	GT:AD:AF:DP	0/1:229,69:0.23:298
chr19	40357360	rs2075097	C	G	1367.77	.	AC=1;AF=0.500;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	0/1:263,92:0.26:355
chr19	40357683	rs759120	T	G	1144.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:171,69:0.29:240
chr19	40362573	rs10422312	A	G	498.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.033;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.87;ReadPosRankSum=0.758;SOR=0.184;set=HC	GT:AD:AF:DP	0/1:59,26:0.31:85
chr19	40363020	rs741143	G	A	2293.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:199,114:0.36:313
chr19	40363926	rs3746013	C	G	2391.77	.	AC=1;AF=0.500;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	0/1:303,131:0.30:434
chr19	40366362	rs3855679	G	C	796.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:87,45:0.34:132
chr19	40366603	rs3061825	G	GGC	516.73	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:34,16:0.32:50
chr19	40367862	rs6508920	T	C	197.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.039;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=2.211;MLEAC=1;MLEAF=0.500;MQ=55.49;MQRankSum=-3.012;QD=1.88;ReadPosRankSum=-0.067;SOR=1.070;set=HC	GT:AD:AF:DP	0/1:87,18:0.17:105
chr19	40368274	.	C	A	1059.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.084;ClippingRankSum=0.000;DP=138;ExcessHet=3.0103;FS=0.928;MLEAC=1;MLEAF=0.500;MQ=49.12;MQRankSum=-5.639;QD=12.18;ReadPosRankSum=0.193;SOR=0.868;set=HC	GT:AD:AF:DP	0/1:50,37:0.43:87
chr19	40368280	rs62106924	A	G	707.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.566;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=50.57;MQRankSum=-5.796;QD=5.40;ReadPosRankSum=-1.151;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:87,44:0.34:131
chr19	40368330	rs74540349	C	T	374.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.503;ClippingRankSum=0.000;DB;DP=376;ExcessHet=3.0103;FS=12.664;MLEAC=1;MLEAF=0.500;MQ=55.42;MQRankSum=-4.055;QD=1.16;ReadPosRankSum=0.985;SOR=1.422;set=HC	GT:AD:AF:DP	0/1:270,54:0.17:324
chr19	40368376	rs75204711	A	C	1560.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.387;ClippingRankSum=0.000;DB;DP=371;ExcessHet=3.0103;FS=12.180;MLEAC=1;MLEAF=0.500;MQ=56.31;MQRankSum=-4.446;QD=4.50;ReadPosRankSum=2.819;SOR=1.075;set=HC	GT:AD:AF:DP	0/1:244,103:0.30:347
chr19	40368395	rs28472548	C	T	5509.77	.	AC=1;AF=0.500;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	0/1:156,182:0.54:338
chr19	40368478	rs77170940	G	A	35.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.552;ClippingRankSum=0.000;DB;DP=226;ExcessHet=3.0103;FS=29.923;MLEAC=1;MLEAF=0.500;MQ=57.19;MQRankSum=-9.437;QD=0.16;ReadPosRankSum=-7.105;SOR=3.503;set=HC	GT:AD:AF:DP	0/1:199,22:0.10:221
chr19	40368498	rs12610683	AA	CC	7376.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr19	40368520	rs36079378	G	C	895.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:85,49:0.37:134
chr19	40374034	rs138587194	A	G	1587.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.919;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=0.539;MLEAC=1;MLEAF=0.500;MQ=45.75;MQRankSum=-4.707;QD=8.10;ReadPosRankSum=2.554;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:120,76:0.39:196
chr19	40376261	rs137870031	A	G	93.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.98;QD=23.26;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr19	40376562	rs144667922	A	G	59.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.187;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=2.632;MLEAC=1;MLEAF=0.500;MQ=51.68;MQRankSum=-6.133;QD=0.55;ReadPosRankSum=-6.074;SOR=1.094;set=HC	GT:AD:AF:DP	0/1:95,14:0.13:109
chr19	40376675	rs77872255	G	A	1402.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.792;ClippingRankSum=0.000;DB;DP=428;ExcessHet=3.0103;FS=0.604;MLEAC=1;MLEAF=0.500;MQ=48.96;MQRankSum=-6.448;QD=3.28;ReadPosRankSum=2.376;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:319,109:0.25:428
chr19	40382178	rs76154158	A	G	541.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:47,26:0.36:73
chr19	40384445	.	G	C	329.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.542;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.02;MQRankSum=-0.358;QD=9.99;ReadPosRankSum=0.615;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:18,15:0.45:33
chr19	40384518	rs149161739	T	C	275.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.838;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=39.33;MQRankSum=-0.319;QD=22.98;ReadPosRankSum=-1.645;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:3,9:0.75:12
chr19	40384527	.	G	A	96.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.224;ClippingRankSum=-0.000;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=39.33;MQRankSum=-0.812;QD=8.06;ReadPosRankSum=0.233;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:7,5:0.42:12
chr19	40384605	rs143306165	A	G	183.10	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.534;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=38.16;MQRankSum=-0.319;QD=22.89;ReadPosRankSum=-1.150;SOR=2.833;set=HC	GT:AD:AF:DP	0/1:1,7:0.88:8
chr19	40384623	rs151293840	A	G	121.41	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.383;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=37.53;MQRankSum=-0.431;QD=20.23;ReadPosRankSum=-0.431;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:1,5:0.83:6
chr19	40384635	rs200682066	A	C	78.85	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=37.53;MQRankSum=-0.431;QD=13.14;ReadPosRankSum=-0.431;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:1,5:0.83:6
chr19	40384654	rs140677440	C	T	57.94	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.150;ClippingRankSum=-0.000;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=38.37;MQRankSum=-0.319;QD=14.48;ReadPosRankSum=-0.000;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr19	40389581	.	G	T	328	.	AC=1;AF=0.500;AN=2;BRF=0.43;FR=0.5000;HP=4;HapScore=2;MGOF=2;MMLQ=28;MQ=43.9;NF=16;NR=2;PP=328;QD=20.1539562526;SC=TACACTACCCGCAGCCCCAGA;SbPval=0.84;Source=Platypus;TC=44;TCF=36;TCR=8;TR=18;WE=40389589;WS=40389571;set=Platypus	GT:AD:AF:DP	0/1:26,18:0.41:44
chr19	40391976	.	C	T	938.77	.	AC=1;AF=0.500;AN=2;DP=141;set=Intersection	GT:AD:AF:DP	0/1:85,51:0.38:136
chr19	40392359	rs56242719	T	C	1453.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.49;QD=27.96;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr19	40392482	rs62108883	A	G	600.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.655;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=24.238;MLEAC=1;MLEAF=0.500;MQ=50.52;MQRankSum=0.076;QD=10.73;ReadPosRankSum=0.091;SOR=1.876;set=HC	GT:AD:AF:DP	0/1:30,26:0.46:56
chr19	40392631	rs80068592	G	A	1141.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.632;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=4.128;MLEAC=1;MLEAF=0.500;MQ=54.61;MQRankSum=-0.941;QD=17.57;ReadPosRankSum=0.142;SOR=0.986;set=HC	GT:AD:AF:DP	0/1:16,49:0.75:65
chr19	40392719	rs200664901	G	A	431.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.375;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=40.00;MQRankSum=0.000;QD=21.59;ReadPosRankSum=1.088;SOR=2.531;set=HC	GT:AD:AF:DP	0/1:4,16:0.80:20
chr19	40405847	rs2011817	C	T	644.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:15,25:0.62:40
chr19	40406019	rs2355719	G	A	1913.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:78,92:0.54:170
chr19	40408146	rs56186636	G	A	2450.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:63,104:0.62:167
chr19	40408268	rs34938990	G	T	613.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:119,39:0.25:158
chr19	40408821	rs11083543	C	G	4067.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:116,185:0.61:301
chr19	40408857	rs4802064	T	C	4779.77	.	AC=1;AF=0.500;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	0/1:130,223:0.63:353
chr19	40408910	rs11083544	T	C	3523.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:95,156:0.62:251
chr19	40553532	rs371269163	TA	T	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.545;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.21;ReadPosRankSum=0.137;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:6,7:0.54:13
chr19	40711333	rs892117	A	G	398.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:42,20:0.32:62
chr19	40719076	rs1129156	T	C	16157.77	.	AC=2;AF=1.00;AN=2;DB;DP=625;set=Intersection	GT:AD:AF:DP	1/1:0,621:1.00:621
chr19	40719410	rs3746006	C	T	1864.77	.	AC=1;AF=0.500;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	0/1:231,106:0.31:337
chr19	40720079	rs3746005	C	T	5972.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr19	40721877	rs8106744	G	C	605.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr19	40723747	rs73933218	C	G	402.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:10,19:0.66:29
chr19	40723844	rs79666308	C	T	238.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:48,25:0.34:73
chr19	40739513	rs33933140	A	G	1155.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.016;ClippingRankSum=0.000;DB;DP=366;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.23;ReadPosRankSum=-0.227;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:276,82:0.23:358
chr19	40739721	rs2304186	G	T	1700.77	.	AC=1;AF=0.500;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	0/1:246,103:0.30:349
chr19	40742320	rs2304189	T	C	5358.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr19	40743739	.	G	A	546	.	AC=1;AF=0.500;AN=2;BRF=0.19;FR=0.5000;HP=2;HapScore=2;MGOF=9;MMLQ=26;MQ=60.0;NF=25;NR=7;PP=546;QD=18.1491003921;SC=GGAGCCTGGCGAATGAGGGCA;SbPval=0.59;Source=Platypus;TC=40;TCF=31;TCR=9;TR=32;WE=40743747;WS=40743729;set=Platypus	GT:AD:AF:DP	1/0:8,32:0.80:40
chr19	40761212	rs3730256	G	A	2347.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:54,91:0.63:145
chr19	40770982	rs3730050	T	C	1088.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr19	40788442	rs73933241	T	G	272.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:16,13:0.45:29
chr19	40788580	.	C	T	1227.77	.	AC=1;AF=0.500;AN=2;DP=95;set=Intersection	GT:AD:AF:DP	0/1:35,60:0.63:95
chr19	40788641	rs11880261	T	C	1189.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr19	40839664	rs8103796	A	C	909.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr19	40854432	rs11667768	C	T	11737.77	.	AC=1;AF=0.500;AN=2;DB;DP=734;set=Intersection	GT:AD:AF:DP	0/1:339,341:0.50:680
chr19	40854454	rs11667774	C	G	11130.77	.	AC=1;AF=0.500;AN=2;DB;DP=637;set=Intersection	GT:AD:AF:DP	0/1:321,308:0.49:629
chr19	40882486	rs3745200	C	G	961.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:29,44:0.60:73
chr19	40886993	rs11670988	C	T	9145.77	.	AC=1;AF=0.500;AN=2;DB;DP=620;set=Intersection	GT:AD:AF:DP	0/1:201,413:0.67:614
chr19	40900865	rs268674	C	T	4315.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:85,176:0.67:261
chr19	40903528	rs118071705	G	A	2736.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:43,120:0.74:163
chr19	40957441	rs373095840	CTT	C	122.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.107;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=1.392;MLEAC=1;MLEAF=0.500;MQ=59.83;MQRankSum=0.000;QD=2.92;ReadPosRankSum=1.002;SOR=1.184;set=HC	GT:AD:AF:DP	0/1:31,11:0.26:42
chr19	41007797	rs75996882	GTC	G	3596.73	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:45,91:0.67:136
chr19	41008049	rs814526	A	G	3723.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:65,156:0.71:221
chr19	41010047	rs843779	C	G	668.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.040;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=6.259;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.87;ReadPosRankSum=0.049;SOR=1.437;set=HC	GT:AD:AF:DP	0/1:50,35:0.41:85
chr19	41012190	rs7258094	C	T	2772.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:87,126:0.59:213
chr19	41025243	rs814538	G	A	1527.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:29,66:0.69:95
chr19	41062902	rs34510741	AC	A	319.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.600;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=2.678;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.71;ReadPosRankSum=0.009;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:36,20:0.36:56
chr19	41082868	rs16974365	T	C	2193.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:39,97:0.71:136
chr19	41082993	rs35684786	GC	G	923.90	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.278;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=1.958;MLEAC=1;MLEAF=0.500;MQ=60.39;MQRankSum=0.579;QD=19.25;ReadPosRankSum=0.739;SOR=1.347;set=HC	GT:AD:AF:DP	1/1:5,43:0.90:48
chr19	41083444	rs2290682	C	T	12247.77	.	AC=1;AF=0.500;AN=2;DB;DP=877;MQ=60.04;set=Intersection	GT:AD:AF:DP	0/1:304,562:0.65:866
chr19	41083854	rs58880858	T	TAC	240.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.116;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.88;ReadPosRankSum=1.308;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:20,15:0.43:35
chr19	41084471	rs3217684	A	AG	1289.73	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:47,50:0.52:97
chr19	41094765	rs12977500	G	A	2285.77	.	AC=1;AF=0.500;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	0/1:247,124:0.33:371
chr19	41095086	.	TGAGGACAGTCCTGTCCAACAGGGAGG	T	7260.73	.	AC=2;AF=1.00;AN=2;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr19	41096189	rs396118	A	G	7066.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr19	41098871	rs56013937	C	T	173.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:22,10:0.31:32
chr19	41104977	rs55815263	C	T	2181.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:57,98:0.63:155
chr19	41106184	rs79102501	T	C	248.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:17,12:0.41:29
chr19	41111069	rs2303729	G	A	14396.77	.	AC=2;AF=1.00;AN=2;DB;DP=559;set=Intersection	GT:AD:AF:DP	1/1:2,551:1.00:553
chr19	41114065	rs2303728	G	T	3199.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:85,143:0.63:228
chr19	41116397	rs1318544	G	A	5362.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr19	41116455	rs33937741	C	G	1812.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:180,105:0.37:285
chr19	41117624	rs2278246	T	C	2615.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr19	41117869	rs1131620	A	G	7668.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr19	41118056	rs1051303	A	G	4858.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:2,178:0.99:180
chr19	41119273	rs12611045	G	C	14295.77	.	AC=2;AF=1.00;AN=2;DB;DP=550;set=Intersection	GT:AD:AF:DP	1/1:0,527:1.00:527
chr19	41120083	rs2369006	A	T	4488.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr19	41122671	rs10403963	C	T	2440.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr19	41123093	rs59030801	A	AG	5089.73	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:3,192:0.98:195
chr19	41125159	rs7259237	A	G	3275.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:1,128:0.99:129
chr19	41125177	rs7259554	G	C	4853.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr19	41128309	rs10880	C	T	4253.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr19	41129079	rs11376199	C	CT	1002.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.298;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=4.211;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.27;ReadPosRankSum=0.267;SOR=1.823;set=HC	GT:AD:AF:DP	0/1:20,69:0.78:89
chr19	41129842	rs7367	C	T	8413.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr19	41131675	rs2278242	C	G	1894.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr19	41132022	rs2278243	C	G	521.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:16,22:0.58:38
chr19	41133844	rs41512448	T	C	585.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:17,27:0.61:44
chr19	41135156	rs35487927	TCA	T	1094.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.627;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=3.017;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.531;QD=9.52;ReadPosRankSum=0.031;SOR=0.415;set=HC	GT:AD:AF:DP	0/1:80,35:0.30:115
chr19	41135475	rs1051481	G	A	2220.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:53,95:0.64:148
chr19	41173880	rs2604901	C	T	8830.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr19	41173892	rs141662737	CTGCTGT	C	5512.73	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:19,134:0.88:153
chr19	41179596	rs73931344	G	A	197.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:3,8:0.73:11
chr19	41192610	rs112258640	T	TTGAG	716.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr19	41192617	rs59449188	T	C	297.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:7,12:0.63:19
chr19	41206208	rs2246095	A	G	509.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.229;ClippingRankSum=0.000;DB;DP=299;ExcessHet=3.0103;FS=1.821;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.74;ReadPosRankSum=0.251;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:237,56:0.19:293
chr19	41209477	rs11538385	C	T	771.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.436;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=0.694;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.40;ReadPosRankSum=1.182;SOR=0.800;set=HC	GT:AD:AF:DP	0/1:100,43:0.30:143
chr19	41211056	rs3865452	T	C	1543.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:39,73:0.65:112
chr19	41251180	rs2369302	T	G	1294.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:16,49:0.75:65
chr19	41255500	rs2254343	C	G	2378.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:51,100:0.66:151
chr19	41257176	rs1457141	G	C	1881.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:29,82:0.74:111
chr19	41265201	rs736625	C	T	1189.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:16,44:0.73:60
chr19	41270866	rs10412175	C	T	4325.77	.	AC=1;AF=0.500;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:115,202:0.64:317
chr19	41283365	rs2233159	C	G	1793.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.00;SOR=0.781;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr19	41286163	rs2287691	C	G	3333.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:73,145:0.67:218
chr19	41350664	rs1809810	A	T	4538.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr19	41354715	.	G	C	872.77	.	AC=1;AF=0.500;AN=2;DP=66;set=Intersection	GT:AD:AF:DP	0/1:27,39:0.59:66
chr19	41403129	rs10574908	CA	C	50.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.781;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=4.474;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.75;ReadPosRankSum=-0.319;SOR=1.552;set=HC	GT:AD:AF:DP	0/1:48,20:0.29:68
chr19	41447928	rs3865460	G	A	9893.77	.	AC=2;AF=1.00;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	1/1:0,369:1.00:369
chr19	41515702	rs2279345	T	C	1901.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr19	41518598	rs35979566	T	A	550.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:73,28:0.28:101
chr19	41531487	rs11670798	A	G	4313.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr19	41531597	rs35930845	C	G	5711.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:4,218:0.98:222
chr19	41531825	rs3745276	A	G	2743.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr19	41558800	rs11083604	T	C	1845.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:47,87:0.65:134
chr19	41558897	rs35910824	C	T	1428.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:45,64:0.59:109
chr19	41564417	rs12978001	C	A	1248.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:21,52:0.71:73
chr19	41622107	rs3833221	G	GC	6003.73	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:106,185:0.64:291
chr19	41622189	rs305968	G	A	7990.77	.	AC=1;AF=0.500;AN=2;DB;DP=558;set=Intersection	GT:AD:AF:DP	0/1:192,362:0.65:554
chr19	41622615	rs12975986	C	T	1264.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:18,55:0.75:73
chr19	41626438	rs34650210	CT	C	780.73	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:18,53:0.75:71
chr19	41627868	rs80319612	G	A	1946.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:100,99:0.50:199
chr19	41628677	rs305975	T	G	6675.77	.	AC=1;AF=0.500;AN=2;DB;DP=484;set=Intersection	GT:AD:AF:DP	0/1:171,300:0.64:471
chr19	41631415	rs137939255	C	A	1135.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.645;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=39.97;MQRankSum=-0.864;QD=19.93;ReadPosRankSum=-0.354;SOR=0.910;set=HC	GT:AD:AF:DP	0/1:16,41:0.72:57
chr19	41700343	rs338600	C	T	6243.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr19	41700397	rs201303420	C	T	5593.77	.	AC=1;AF=0.500;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	0/1:158,248:0.61:406
chr19	41700493	rs338599	G	C	11297.77	.	AC=2;AF=1.00;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	1/1:0,414:1.00:414
chr19	41704832	rs338592	A	G	4299.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr19	41725271	rs10411012	A	G	1298.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:33,58:0.64:91
chr19	41743861	rs7249222	A	G	22919.77	.	AC=2;AF=1.00;AN=2;DB;DP=842;set=Intersection	GT:AD:AF:DP	1/1:0,836:1.00:836
chr19	41759631	.	AC	A	488.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.057;ClippingRankSum=0.000;DP=76;ExcessHet=3.0103;FS=2.243;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.89;ReadPosRankSum=0.874;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:27,28:0.51:55
chr19	41811730	rs12745	T	C	4862.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr19	41838206	rs8179181	G	A	1803.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr19	41858921	rs1800470	G	A	4721.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:4,186:0.98:190
chr19	41863777	rs11668109	A	C	4316.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr19	41869392	rs2241714	T	C	6010.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:2,224:0.99:226
chr19	41869468	rs2241713	G	C	3559.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr19	41869487	rs3217387	C	CA	3678.73	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr19	41889423	rs11880674	A	T	5292.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.43;SOR=1.849;set=HC	GT:AD:AF:DP	1/1:0,114:1.00:114
chr19	41889429	rs7259900	A	T	2825.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.187;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.97;ReadPosRankSum=0.421;SOR=0.416;set=HC	GT:AD:AF:DP	1/1:2,121:0.98:123
chr19	41889748	rs12602	T	C	6245.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr19	41895839	.	C	CT	220.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.264;ClippingRankSum=0.000;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.36;MQRankSum=2.276;QD=3.40;ReadPosRankSum=-0.601;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:43,22:0.34:65
chr19	41897674	rs878082	G	A	1175.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:1,39:0.97:40
chr19	41897688	rs878083	G	A	1547.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:1,54:0.98:55
chr19	41903220	rs10853751	G	A	12528.77	.	AC=2;AF=1.00;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	1/1:0,465:1.00:465
chr19	41903671	rs892044	A	G	1095.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.40;QD=43.83;SOR=3.528;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr19	41903675	rs892043	A	G	1127.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.39;QD=43.38;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr19	41919944	rs3213861	A	C	5447.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr19	41920211	rs3213860	T	C	1642.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr19	41928336	rs284651	T	C	3087.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:1,117:0.99:118
chr19	41928652	rs284652	C	T	10150.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:1,354:1.00:355
chr19	41928701	rs284653	C	T	16925.77	.	AC=2;AF=1.00;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	1/1:2,389:0.99:391
chr19	41928724	rs284654	G	A	19221.77	.	AC=2;AF=1.00;AN=2;DB;DP=484;set=Intersection	GT:AD:AF:DP	1/1:1,480:1.00:481
chr19	41928765	rs284655	C	T	18423.77	.	AC=2;AF=1.00;AN=2;DB;DP=687;set=Intersection	GT:AD:AF:DP	1/1:1,681:1.00:682
chr19	41928867	rs3217385	G	GC	17114.73	.	AC=2;AF=1.00;AN=2;DB;DP=672;set=Intersection	GT:AD:AF:DP	1/1:2,637:1.00:639
chr19	41930396	rs4674	A	G	29814.77	.	AC=2;AF=1.00;AN=2;DB;DP=1089;set=Intersection	GT:AD:AF:DP	1/1:2,1075:1.00:1077
chr19	41931454	rs113478859	A	AGGCCAGGGCCGG	4491.73	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr19	41932084	rs284660	G	T	11851.77	.	AC=2;AF=1.00;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	1/1:1,440:1.00:441
chr19	41932120	rs284661	C	T	11715.77	.	AC=2;AF=1.00;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	1/1:0,429:1.00:429
chr19	41932275	rs284662	T	C	8538.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr19	41932612	rs284663	C	T	7533.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr19	41949870	rs3745286	T	C	689.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr19	42027500	rs4803475	A	G	2181.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.192;ClippingRankSum=0.000;DB;DP=224;ExcessHet=3.0103;FS=0.544;MLEAC=1;MLEAF=0.500;MQ=59.33;MQRankSum=0.381;QD=9.87;ReadPosRankSum=2.415;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:155,66:0.30:221
chr19	42027514	rs4803476	T	A	2299.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:152,69:0.31:221
chr19	42083849	rs714106	C	A	1177.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:165,70:0.30:235
chr19	42085873	rs2302188	A	G	1447.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:153,80:0.34:233
chr19	42092815	rs3745936	T	A	1649.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:261,99:0.28:360
chr19	42221607	rs7249230	A	G	3108.77	.	AC=1;AF=0.500;AN=2;DB;DP=556;set=Intersection	GT:AD:AF:DP	0/1:366,177:0.33:543
chr19	42265866	rs28547939	C	G	3424.77	.	AC=1;AF=0.500;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:218,99:0.31:317
chr19	42265889	rs11548735	G	T	3863.77	.	AC=1;AF=0.500;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	0/1:242,120:0.33:362
chr19	42311060	rs5828129	A	AAAG	912.73	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:71,27:0.28:98
chr19	42313803	rs3795022	T	C	301.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:47,16:0.25:63
chr19	42313921	rs734107	G	T	2710.77	.	AC=1;AF=0.500;AN=2;DB;DP=511;set=Intersection	GT:AD:AF:DP	0/1:339,160:0.32:499
chr19	42315281	rs899662	G	T	527.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:48,28:0.37:76
chr19	42315300	rs2008808	G	T	306.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:45,19:0.30:64
chr19	42342319	rs2290695	A	G	386.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:44,22:0.33:66
chr19	42342822	rs7252877	T	A	207.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.249;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=10.447;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.89;ReadPosRankSum=0.114;SOR=0.021;set=HC	GT:AD:AF:DP	0/1:10,11:0.52:21
chr19	42342923	rs10414356	T	A	828.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:89,48:0.35:137
chr19	42343155	rs4130852	G	T	925.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:104,47:0.31:151
chr19	42343526	rs3922888	G	T	574.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.287;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=2.997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.42;ReadPosRankSum=0.138;SOR=1.019;set=HC	GT:AD:AF:DP	0/1:97,33:0.25:130
chr19	42354629	rs2305809	T	C	2841.77	.	AC=1;AF=0.500;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	0/1:286,149:0.34:435
chr19	42373298	rs1366610	G	A	346.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:51,20:0.28:71
chr19	42373679	rs2075750	C	T	277.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:28,15:0.35:43
chr19	42373893	rs2075751	C	T	4516.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr19	42375244	rs2075754	C	T	418.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:71,26:0.27:97
chr19	42409336	rs41307033	T	G	3083.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:69,134:0.66:203
chr19	42413644	rs182096830	T	G	568.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.999;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=7.121;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=0.000;QD=3.72;ReadPosRankSum=-1.585;SOR=0.923;set=HC	GT:AD:AF:DP	0/1:115,38:0.25:153
chr19	42462788	rs1075728	G	A	699.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:84,38:0.31:122
chr19	42463447	rs735571	C	T	17026.77	.	AC=2;AF=1.00;AN=2;DB;DP=645;set=Intersection	GT:AD:AF:DP	1/1:0,638:1.00:638
chr19	42471050	rs919390	G	C	1868.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr19	42489516	rs2217342	A	C	6127.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr19	42563506	rs141012226	G	A	952.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:120,55:0.31:175
chr19	42736267	rs851609	A	G	3639.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr19	42753649	rs11557114	G	C	3976.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:77,172:0.69:249
chr19	42793590	rs3826706	G	A	3022.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr19	42799049	rs1052023	C	T	3125.77	.	AC=1;AF=0.500;AN=2;DB;DP=482;set=Intersection	GT:AD:AF:DP	0/1:309,167:0.35:476
chr19	42848764	rs874002	A	G	4084.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:101,188:0.65:289
chr19	42858270	.	G	GT	189.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.563;ClippingRankSum=0.000;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.21;ReadPosRankSum=1.723;SOR=0.589;set=HC	GT:AD:AF:DP	0/1:62,24:0.28:86
chr19	42860634	.	C	T	1654.77	.	AC=1;AF=0.500;AN=2;DP=132;set=Intersection	GT:AD:AF:DP	0/1:52,77:0.60:129
chr19	42861475	rs73033434	G	A	277.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:29,14:0.33:43
chr19	43097943	.	C	T	6047.77	.	AC=1;AF=0.500;AN=2;DP=401;set=Intersection	GT:AD:AF:DP	0/1:130,269:0.67:399
chr19	43257593	rs142582233	A	G	982.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:91,54:0.37:145
chr19	43420264	rs2074856	C	T	12027.77	.	AC=1;AF=0.500;AN=2;DB;DP=841;set=Intersection	GT:AD:AF:DP	0/1:292,540:0.65:832
chr19	43420451	rs3198831	G	C	10094.77	.	AC=1;AF=0.500;AN=2;DB;DP=603;set=Intersection	GT:AD:AF:DP	0/1:177,420:0.70:597
chr19	43422100	rs58309502	C	G	1359.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;MQ=58.15;set=Intersection	GT:AD:AF:DP	0/1:17,50:0.75:67
chr19	43428981	rs200700777	A	AG	929.73	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:111,38:0.26:149
chr19	43433570	rs2074857	A	C	3895.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:75,162:0.68:237
chr19	43433805	rs1065178	A	G	5211.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:87,223:0.72:310
chr19	43439694	rs113247044	A	G	11055.77	.	AC=1;AF=0.500;AN=2;DB;DP=765;set=Intersection	GT:AD:AF:DP	0/1:259,498:0.66:757
chr19	43439739	rs58684857	T	C	10458.77	.	AC=1;AF=0.500;AN=2;DB;DP=682;set=Intersection	GT:AD:AF:DP	0/1:237,445:0.65:682
chr19	43439793	rs7245978	G	A	13597.77	.	AC=2;AF=1.00;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	1/1:0,476:1.00:476
chr19	43439848	rs113195821	G	A	5240.77	.	AC=1;AF=0.500;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	0/1:139,231:0.62:370
chr19	43448156	rs55931787	G	A	909.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:57,38:0.40:95
chr19	43519362	rs11083680	C	T	6257.77	.	AC=1;AF=0.500;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	0/1:138,272:0.66:410
chr19	43519442	rs10414166	T	C	7238.77	.	AC=1;AF=0.500;AN=2;DB;DP=480;set=Intersection	GT:AD:AF:DP	0/1:171,309:0.64:480
chr19	43530379	rs2526716	A	G	846.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:26,36:0.58:62
chr19	43530390	rs2736151	C	T	979.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:32,43:0.57:75
chr19	43530640	rs60941975	GT	G	4117.73	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr19	43690506	rs8107936	G	C	2901.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:80,132:0.62:212
chr19	43690667	rs12610783	CT	TC	2864.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.309;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=1.459;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.50;MQRankSum=-4.029;QD=22.56;ReadPosRankSum=-0.957;SOR=0.545;set=HC	GT:AD:AF:DP	0/1:54,73:0.57:127
chr19	43690678	rs12610809	G	A	2550.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.701;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.08;MQRankSum=-4.419;QD=23.40;ReadPosRankSum=-1.117;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:49,60:0.55:109
chr19	43690700	rs12609374	T	C	1680.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:39,41:0.51:80
chr19	43772270	rs3746296	G	T	4467.77	.	AC=1;AF=0.500;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	0/1:153,200:0.57:353
chr19	43857873	rs45441892	G	C	1072.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:117,57:0.33:174
chr19	43858317	rs4803613	G	A	308.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:29,15:0.34:44
chr19	43859549	rs1962260	T	C	1205.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr19	43860053	rs71350665	G	A	1759.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr19	43860192	rs71337594	T	G	524.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.38;QD=30.87;SOR=5.784;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr19	43860251	rs199668750	G	A	331.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=41.47;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr19	43860255	rs200662237	T	G	331.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=41.47;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr19	43865499	rs71339512	T	C	2826.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.855;ClippingRankSum=0.000;DB;DP=250;ExcessHet=3.0103;FS=1.548;MLEAC=1;MLEAF=0.500;MQ=47.54;MQRankSum=-5.143;QD=11.40;ReadPosRankSum=-0.908;SOR=0.803;set=HC	GT:AD:AF:DP	0/1:112,136:0.55:248
chr19	43865692	rs61625631	G	A	3524.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.79;QD=26.91;SOR=0.908;set=HC	GT:AD:AF:DP	1/1:0,131:1.00:131
chr19	43866653	rs7254228	T	G	4099.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr19	43876931	rs66774479	G	A	13968.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:0,329:1.00:329
chr19	43876942	rs72623900	C	T	13831.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr19	43876979	rs71774559	GC	G	13958.73	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr19	43876983	rs114301694	C	T	14192.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.34;SOR=0.865;set=HC	GT:AD:AF:DP	1/1:0,313:1.00:313
chr19	43876991	rs10404818	T	G	14821.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.811;ClippingRankSum=0.000;DB;DP=327;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=45.33;ReadPosRankSum=1.298;SOR=0.321;set=HC	GT:AD:AF:DP	1/1:1,326:1.00:327
chr19	43876994	rs10404822	T	G	14939.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.790;ClippingRankSum=0.000;DB;DP=325;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=45.97;ReadPosRankSum=1.210;SOR=0.329;set=HC	GT:AD:AF:DP	1/1:1,324:1.00:325
chr19	43877001	rs10403027	A	G	14719.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.763;ClippingRankSum=0.000;DB;DP=340;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=43.29;ReadPosRankSum=0.871;SOR=0.347;set=HC	GT:AD:AF:DP	1/1:1,339:1.00:340
chr19	43877081	rs61525615	G	T	9456.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:3,350:0.99:353
chr19	43877540	rs369424159	C	G	488.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.57;QD=32.58;SOR=5.549;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr19	43883124	rs4803622	C	T	2800.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr19	43883313	rs4803623	C	G	3058.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.20;QD=29.70;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr19	43965804	rs28477226	G	T	3109.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:93,139:0.60:232
chr19	43967485	rs192050400	G	A	11531.77	.	AC=1;AF=0.500;AN=2;DB;DP=786;set=Intersection	GT:AD:AF:DP	0/1:260,516:0.66:776
chr19	43967563	rs141878534	G	T	10682.77	.	AC=1;AF=0.500;AN=2;DB;DP=803;set=Intersection	GT:AD:AF:DP	0/1:306,490:0.62:796
chr19	43969757	rs2259013	A	G	4173.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:2,146:0.99:148
chr19	43979589	rs1055099	G	T	7003.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:2,261:0.99:263
chr19	43982467	rs2682543	A	G	712.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr19	43983740	rs1133929	T	C	666.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.10;SOR=3.556;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr19	43999061	rs146048489	C	T	979.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:8,37:0.82:45
chr19	43999256	.	A	G	628	.	AC=1;AF=0.500;AN=2;BRF=0.39;FR=0.5000;HP=2;HapScore=2;MGOF=101;MMLQ=15;MQ=55.69;NF=14;NR=11;PP=628;QD=26.5108485019;SC=TGGACTCCTGAGTCTGAGGGA;SbPval=0.7;Source=Platypus;TC=67;TCF=35;TCR=32;TR=25;WE=43999264;WS=43999250;set=Platypus	GT:AD:AF:DP	0/1:42,25:0.37:67
chr19	43999292	.	G	GGTCTGAGGGAGGAGGAGACTCGGGGCAGGACCCCTGA	2690.73	.	AC=2;AF=1.00;AN=2;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr19	43999634	rs1125030	A	C	9318.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:0,336:1.00:336
chr19	44001590	rs191130230	G	A	632.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:14,26:0.65:40
chr19	44001891	rs2682549	T	C	3403.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr19	44005876	rs112058634	CCAAA	C	2958.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.833;ClippingRankSum=0.000;DB;DP=360;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=1.700;QD=8.41;ReadPosRankSum=2.176;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:261,91:0.26:352
chr19	44012005	rs2599452	G	A	366.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:34,21:0.38:55
chr19	44012880	rs2682578	A	G	2192.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr19	44031155	rs187613661	C	T	3453.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:97,156:0.62:253
chr19	44031324	rs3810381	C	T	1558.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:125,77:0.38:202
chr19	44047550	rs3547	T	C	734.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:21,33:0.61:54
chr19	44047826	rs2682557	T	A	5646.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr19	44050195	rs25479	C	T	1785.73	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:142,97:0.41:239
chr19	44055582	rs2139720	C	T	246.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.797;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.68;ReadPosRankSum=0.814;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:52,15:0.22:67
chr19	44055726	rs25487	T	C	2162.77	.	AC=1;AF=0.500;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	0/1:214,122:0.36:336
chr19	44055898	rs25486	C	T	751.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:92,42:0.31:134
chr19	44057227	rs915927	T	C	142.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:42,12:0.22:54
chr19	44079687	rs3213245	G	A	1581.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:14,67:0.83:81
chr19	44081288	rs2682585	A	G	1603.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:34,72:0.68:106
chr19	44081499	rs2682586	A	G	1472.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:27,64:0.70:91
chr19	44081601	rs3810378	G	C	288.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:4,11:0.73:15
chr19	44082791	rs12608635	T	C	1817.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:68,86:0.56:154
chr19	44082945	rs304731	T	C	2544.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:45,115:0.72:160
chr19	44098903	rs304726	T	A	1075.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:13,38:0.75:51
chr19	44098963	rs304725	C	G	2196.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:39,84:0.68:123
chr19	44111524	rs146070175	TAC	T	314.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.074;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=5.279;MLEAC=1;MLEAF=0.500;MQ=60.39;MQRankSum=-0.996;QD=3.18;ReadPosRankSum=1.165;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:77,22:0.22:99
chr19	44111568	rs35296355	TAC	T	4840.73	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:54,175:0.76:229
chr19	44116956	rs13343696	A	G	1262.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:98,62:0.39:160
chr19	44118191	rs34163641	G	A	4169.77	.	AC=1;AF=0.500;AN=2;DB;DP=745;set=Intersection	GT:AD:AF:DP	0/1:506,224:0.31:730
chr19	44118680	rs1860149	A	G	128.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:11,7:0.39:18
chr19	44128437	rs2240633	A	G	1226.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:114,60:0.34:174
chr19	44129321	rs145789919	C	G	3639.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:126,172:0.58:298
chr19	44131297	rs407049	T	C	9495.77	.	AC=2;AF=1.00;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	1/1:0,361:1.00:361
chr19	44153248	rs138492321	T	C	2696.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:85,121:0.59:206
chr19	44251759	rs78323661	C	T	2006.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:182,109:0.37:291
chr19	44254972	rs164070	C	T	1800.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr19	44276370	rs3760979	A	G	1607.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr19	44278779	rs649540	T	G	5646.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.320;ClippingRankSum=0.000;DB;DP=265;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.72;ReadPosRankSum=-1.861;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:108,152:0.58:260
chr19	44278779	.	TAG	GAA	2772	.	AC=1;AF=0.500;AN=2;BRF=0.56;FR=0.5000;HP=2;HapScore=2;MGOF=1;MMLQ=24;MQ=60.0;NF=33;NR=42;PP=2772;QD=20;SC=CAGCTGCCGGTAGGGGGCCAA;SbPval=0.67;Source=Platypus;TC=159;TCF=75;TCR=84;TR=75;WE=44278789;WS=44278769;set=Platypus	GT:AD:AF:DP	1/0:84,75:0.47:159
chr19	44278781	rs563995	G	A	5646.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.804;ClippingRankSum=0.000;DB;DP=254;ExcessHet=3.0103;FS=0.464;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.50;ReadPosRankSum=-1.743;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:106,145:0.58:251
chr19	44280837	rs514328	G	A	2141.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.20;SOR=0.815;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr19	44280869	.	A	AT	81.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.122;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.36;ReadPosRankSum=-0.573;SOR=0.539;set=HC	GT:AD:AF:DP	0/1:47,13:0.22:60
chr19	44280980	rs35773079	T	G	189.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:6,10:0.62:16
chr19	44302624	rs349053	T	C	11544.77	.	AC=2;AF=1.00;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	1/1:2,431:1.00:433
chr19	44303066	rs11547806	C	G	3063.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr19	44306389	rs72214885	GCCCCCA	G	10348.73	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr19	44351107	rs10421861	G	A	1892.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr19	44351166	rs79626467	GGGAGAT	G	7603.73	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr19	44351694	rs2195980	C	T	10491.77	.	AC=2;AF=1.00;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	1/1:0,390:1.00:390
chr19	44351836	rs957569	G	A	8011.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr19	44352665	rs2356437	TG	CA	10077.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr19	44352688	rs2883946	G	A	5678.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr19	44377357	rs239942	C	T	10860.77	.	AC=2;AF=1.00;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	1/1:0,388:1.00:388
chr19	44419030	rs420242	A	G	9817.77	.	AC=2;AF=1.00;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	1/1:0,367:1.00:367
chr19	44469577	rs451601	T	G	2795.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:1,89:0.99:90
chr19	44470189	rs454301	T	A	14581.77	.	AC=2;AF=1.00;AN=2;DB;DP=547;set=Intersection	GT:AD:AF:DP	1/1:1,535:1.00:536
chr19	44470420	rs439676	T	C	13863.77	.	AC=2;AF=1.00;AN=2;DB;DP=514;set=Intersection	GT:AD:AF:DP	1/1:0,507:1.00:507
chr19	44470548	rs453640	A	G	17097.77	.	AC=2;AF=1.00;AN=2;DB;DP=613;set=Intersection	GT:AD:AF:DP	1/1:0,596:1.00:596
chr19	44470663	rs435590	G	C	23155.77	.	AC=2;AF=1.00;AN=2;DB;DP=845;set=Intersection	GT:AD:AF:DP	1/1:2,825:1.00:827
chr19	44471209	rs365745	T	A	8654.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:0,319:1.00:319
chr19	44471323	rs366111	G	A	9571.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	1/1:0,350:1.00:350
chr19	44471632	rs56887248	CT	C	346.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.432;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=5.388;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=0.906;QD=6.93;ReadPosRankSum=1.628;SOR=1.911;set=HC	GT:AD:AF:DP	0/1:16,34:0.68:50
chr19	44500478	rs398235	A	T	7342.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr19	44500761	rs448921	G	A	17899.77	.	AC=2;AF=1.00;AN=2;DB;DP=678;MQ=59.98;set=Intersection	GT:AD:AF:DP	1/1:0,670:1.00:670
chr19	44501116	rs388812	A	G	16550.77	.	AC=2;AF=1.00;AN=2;DB;DP=604;set=Intersection	GT:AD:AF:DP	1/1:0,589:1.00:589
chr19	44501227	rs388471	A	G	10979.77	.	AC=2;AF=1.00;AN=2;DB;DP=389;MQ=59.99;set=Intersection	GT:AD:AF:DP	1/1:0,378:1.00:378
chr19	44501627	rs35292176	T	C	1995.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr19	44503379	rs452554	C	T	2494.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr19	44503541	rs11314755	TA	T	2441.73	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr19	44503569	rs7252394	G	A	1094.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr19	44503607	rs7253205	T	C	653.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr19	44511202	rs2356549	A	T	8359.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:1,310:1.00:311
chr19	44511223	rs424147	T	G	9338.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:1,346:1.00:347
chr19	44511389	rs2191566	G	T	4634.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:1,170:0.99:171
chr19	44530390	rs8101750	T	C	3600.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;MQ=60.08;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr19	44530444	rs3830527	GAC	G	2226.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;MQ=60.19;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr19	44535999	rs7258517	G	T	7981.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:2,276:0.99:278
chr19	44564401	rs12610472	T	C	2904.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr19	44564981	rs3826941	G	A	13322.77	.	AC=2;AF=1.00;AN=2;DB;DP=495;set=Intersection	GT:AD:AF:DP	1/1:0,486:1.00:486
chr19	44565125	rs4502339	A	G	4752.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:2,168:0.99:170
chr19	44570393	rs6509138	C	A	6846.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:1,265:1.00:266
chr19	44570551	rs4375771	G	A	5397.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr19	44571154	rs4433920	T	C	10723.77	.	AC=2;AF=1.00;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	1/1:2,379:0.99:381
chr19	44580440	rs201907991	CT	C	393.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.514;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=2.630;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.611;QD=2.36;ReadPosRankSum=1.437;SOR=0.449;set=HC	GT:AD:AF:DP	0/1:110,57:0.34:167
chr19	44580758	rs57895932	T	C	1246.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr19	44585159	rs4803674	T	A	10905.77	.	AC=2;AF=1.00;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	1/1:0,396:1.00:396
chr19	44586076	rs4553729	T	C	5507.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr19	44589999	rs139900131	TCTC	T	17728.73	.	AC=2;AF=1.00;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	1/1:0,397:1.00:397
chr19	44590558	rs7255701	C	T	8555.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr19	44591360	rs8113249	G	A	3539.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr19	44604914	rs62115526	T	C	7792.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr19	44610665	rs2068061	A	G	11303.77	.	AC=2;AF=1.00;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	1/1:0,419:1.00:419
chr19	44610798	rs4239529	A	T	10888.77	.	AC=2;AF=1.00;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	1/1:0,405:1.00:405
chr19	44611066	rs7508149	T	C	20760.77	.	AC=2;AF=1.00;AN=2;DB;DP=757;set=Intersection	GT:AD:AF:DP	1/1:0,751:1.00:751
chr19	44611420	rs4508518	A	G	17572.77	.	AC=2;AF=1.00;AN=2;DB;DP=620;set=Intersection	GT:AD:AF:DP	1/1:0,616:1.00:616
chr19	44612005	rs3746321	A	G	11706.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.85;SOR=0.989;set=HC	GT:AD:AF:DP	1/1:0,267:1.00:267
chr19	44612014	rs3200505	A	T	11325.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.41;SOR=0.945;set=HC	GT:AD:AF:DP	1/1:0,255:1.00:255
chr19	44612231	rs3746319	A	G	8204.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr19	44634903	rs10413195	A	G	1676.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr19	44662274	rs35483237	T	TA	1019.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.023;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=1.024;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=0.605;QD=11.08;ReadPosRankSum=1.007;SOR=0.494;set=HC	GT:AD:AF:DP	0/1:29,63:0.68:92
chr19	44676148	rs2232801	G	C	5658.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:1,210:1.00:211
chr19	44677233	rs12459795	A	G	5324.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:1,183:0.99:184
chr19	44721699	rs9304640	C	T	11910.77	.	AC=2;AF=1.00;AN=2;DB;DP=448;set=Intersection	GT:AD:AF:DP	1/1:0,440:1.00:440
chr19	44739303	rs2279073	T	C	8602.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:1,315:1.00:316
chr19	44739399	rs2279072	T	C	8615.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chr19	44764064	rs1233444	A	G	6241.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:1,222:1.00:223
chr19	44769974	rs12462723	C	T	1161.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr19	44778405	rs1233428	A	C	9803.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	1/1:1,350:1.00:351
chr19	44792701	rs2125579	T	G	11921.77	.	AC=2;AF=1.00;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	1/1:0,431:1.00:431
chr19	44792969	rs2609908	G	A	3956.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr19	44807359	rs67283809	GAT	G	589.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr19	44832684	rs2609880	T	G	15264.77	.	AC=2;AF=1.00;AN=2;DB;DP=576;set=Intersection	GT:AD:AF:DP	1/1:1,568:1.00:569
chr19	44832875	rs2722722	A	G	12953.77	.	AC=2;AF=1.00;AN=2;DB;DP=495;set=Intersection	GT:AD:AF:DP	1/1:2,483:1.00:485
chr19	44832992	rs2722723	C	G	7969.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr19	44833506	rs4325673	C	T	8629.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr19	44833851	rs4280359	G	C	5907.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr19	44840789	rs2571104	T	C	5217.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr19	44845385	rs74260472	C	T	2129.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr19	44847480	rs5828194	GA	G	9989.73	.	AC=2;AF=1.00;AN=2;DB;DP=297;MQ=60.11;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr19	44871287	rs8113807	T	C	5079.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.947;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=2.006;MLEAC=1;MLEAF=0.500;MQ=59.59;MQRankSum=-0.956;QD=27.76;ReadPosRankSum=-1.722;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:55,128:0.70:183
chr19	44871293	rs2571074	T	C	5129.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.306;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=1.250;MLEAC=1;MLEAF=0.500;MQ=59.59;MQRankSum=-0.939;QD=28.03;ReadPosRankSum=-0.633;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:55,128:0.70:183
chr19	44890697	rs1836280	A	G	10871.77	.	AC=2;AF=1.00;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	1/1:40,418:0.91:458
chr19	44890801	rs12610859	T	C	13885.77	.	AC=2;AF=1.00;AN=2;DB;DP=492;set=Intersection	GT:AD:AF:DP	1/1:0,485:1.00:485
chr19	44891784	rs2571089	T	C	9782.77	.	AC=2;AF=1.00;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	1/1:0,348:1.00:348
chr19	44892225	rs114985922	T	G	318.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.283;ClippingRankSum=0.000;DB;DP=680;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.24;MQRankSum=-22.686;QD=0.47;ReadPosRankSum=-1.882;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:622,55:0.08:677
chr19	44892228	rs117953191	G	C	336.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.556;ClippingRankSum=0.000;DB;DP=662;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.28;MQRankSum=-22.199;QD=0.51;ReadPosRankSum=-2.032;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:608,51:0.08:659
chr19	44892333	rs2571090	A	T	5136.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;MQ=59.99;set=Intersection	GT:AD:AF:DP	1/1:1,187:0.99:188
chr19	44896487	rs2571123	G	C	5743.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr19	44896857	rs2571122	G	A	1181.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr19	44898575	.	T	TA	52	.	AC=2;AF=1.00;AN=2;BRF=0.46;FR=1.0000;HP=11;HapScore=2;MGOF=10;MMLQ=28;MQ=61.78;NF=2;NR=1;PP=52;QD=22.0;SC=TAAAGTATAATAAAAAAAAAG;SbPval=0.7;Source=Platypus;TC=3;TCF=2;TCR=1;TR=3;WE=44898583;WS=44898565;set=Platypus	GT:AD:AF:DP	1/1:0,3:1.00:3
chr19	44898662	rs2571124	C	T	562.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr19	44901526	rs2722650	A	G	1033.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr19	44901557	rs2722651	A	G	606.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr19	44932972	rs1434579	C	T	2424.77	.	AC=1;AF=0.500;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	0/1:308,134:0.30:442
chr19	44933947	rs12151338	G	A	743.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.463;ClippingRankSum=0.000;DB;DP=245;ExcessHet=3.0103;FS=6.909;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.15;ReadPosRankSum=1.480;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:186,50:0.21:236
chr19	44934489	rs2571174	G	A	6793.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr19	44947050	rs204548	T	C	2938.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:55,124:0.69:179
chr19	44947184	rs204547	T	C	606.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:11,26:0.70:37
chr19	44972036	rs139713518	C	T	719.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:79,37:0.32:116
chr19	44976058	rs2571053	C	T	3348.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:72,138:0.66:210
chr19	44977071	rs1897824	C	T	6172.77	.	AC=1;AF=0.500;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	0/1:147,272:0.65:419
chr19	44977240	rs1897823	A	G	9201.77	.	AC=1;AF=0.500;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	0/1:127,240:0.65:367
chr19	44977262	rs17714261	T	C	9186.77	.	AC=1;AF=0.500;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	0/1:133,247:0.65:380
chr19	44977382	rs1897822	C	T	2999.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:117,129:0.52:246
chr19	44977405	rs1897821	C	T	2409.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:87,102:0.54:189
chr19	44977417	rs55771561	A	G	2172.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:71,90:0.56:161
chr19	44981375	rs954314	T	C	2330.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:43,95:0.69:138
chr19	44981883	rs1897820	C	G	2001.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:57,88:0.61:145
chr19	44983567	rs2253563	C	G	1681.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:38,73:0.66:111
chr19	44983728	rs35167767	TG	T	949.73	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:14,33:0.70:47
chr19	45001232	rs2571109	C	T	1975.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:57,91:0.61:148
chr19	45001346	rs2571108	G	A	2248.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:59,100:0.63:159
chr19	45004042	rs12459496	T	C	459.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:53,23:0.30:76
chr19	45004305	rs12977470	G	C	4611.77	.	AC=1;AF=0.500;AN=2;DB;DP=688;set=Intersection	GT:AD:AF:DP	0/1:444,240:0.35:684
chr19	45015596	rs1004605	T	G	1316.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:119,68:0.36:187
chr19	45016116	rs8100718	A	G	599.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:99,41:0.29:140
chr19	45016990	rs5828200	CT	C	8266.73	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr19	45017249	rs1465723	T	C	3044.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:73,128:0.64:201
chr19	45017477	rs10706694	TA	T	3714.73	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr19	45017486	rs4802229	T	C	721.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.444;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.59;ReadPosRankSum=-0.040;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:44,40:0.48:84
chr19	45017503	.	CTT	C	237.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.507;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.81;ReadPosRankSum=-0.894;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:8,14:0.64:22
chr19	45024581	rs12982449	C	G	3129.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:92,145:0.61:237
chr19	45024875	rs12975863	T	C	1524.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:29,51:0.64:80
chr19	45024879	rs144346131	C	CGTGT	2355.73	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:23,71:0.76:94
chr19	45028169	rs7260180	C	T	3566.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:106,168:0.61:274
chr19	45033379	.	G	GCA	1057.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.733;ClippingRankSum=0.000;DP=146;ExcessHet=3.0103;FS=5.640;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=0.955;QD=9.28;ReadPosRankSum=-1.072;SOR=0.309;set=HC	GT:AD:AF:DP	0/1:58,56:0.49:114
chr19	45121424	rs10412507	G	A	1243.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:174,73:0.30:247
chr19	45126994	rs846857	A	G	2706.77	.	AC=1;AF=0.500;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	0/1:266,145:0.35:411
chr19	45138648	rs140576977	TTC	T	468.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.53;ReadPosRankSum=-1.369;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:6,18:0.75:24
chr19	45147518	rs5828211	C	CA	12670.73	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr19	45147542	rs439446	T	C	10683.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr19	45147576	rs5828212	CG	C	5853.73	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr19	45157113	rs71171278	A	AG	25080.73	.	AC=2;AF=1.00;AN=2;DB;DP=648;set=Intersection	GT:AD:AF:DP	1/1:0,641:1.00:641
chr19	45162038	rs203710	A	G	4902.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr19	45176028	rs35695969	C	T	4777.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;MQ=59.99;set=Intersection	GT:AD:AF:DP	0/1:106,210:0.66:316
chr19	45184619	rs62119326	A	G	2366.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:85,104:0.55:189
chr19	45202640	rs2119660	G	T	1976.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:168,64:0.28:232
chr19	45202652	rs3948201	C	T	1834.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:157,56:0.26:213
chr19	45202701	rs199957735	C	CT	110.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.572;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=2.411;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.718;QD=1.17;ReadPosRankSum=-0.005;SOR=0.401;set=HC	GT:AD:AF:DP	0/1:75,20:0.21:95
chr19	45203837	rs2919848	G	C	445.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:23,23:0.50:46
chr19	45206532	rs2965167	G	A	1953.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr19	45206695	rs894189	G	A	1087.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:106,59:0.36:165
chr19	45211119	rs10426475	C	T	573.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:98,36:0.27:134
chr19	45211407	rs61744497	C	T	5440.77	.	AC=1;AF=0.500;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	0/1:105,240:0.70:345
chr19	45260214	rs2927456	G	A	672.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:106,41:0.28:147
chr19	45260554	rs11880948	T	C	1520.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:149,84:0.36:233
chr19	45261705	rs34967149	C	T	1201.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:118,66:0.36:184
chr19	45284266	rs35106910	A	C	781.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:108,50:0.32:158
chr19	45284390	rs41301961	T	G	229.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.429;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=4.931;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.95;ReadPosRankSum=-1.159;SOR=0.231;set=HC	GT:AD:AF:DP	0/1:62,16:0.21:78
chr19	45314767	rs7249750	C	T	194.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:31,11:0.26:42
chr19	45316804	rs3810141	C	T	7405.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.050;ClippingRankSum=0.000;DB;DP=677;ExcessHet=3.0103;FS=0.564;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.04;ReadPosRankSum=-0.461;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:459,212:0.32:671
chr19	45316807	rs3810140	C	T	7318.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.010;ClippingRankSum=0.000;DB;DP=674;ExcessHet=3.0103;FS=0.557;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.96;ReadPosRankSum=-0.808;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:457,211:0.32:668
chr19	45323073	rs3669	T	C	1112.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:73,53:0.42:126
chr19	45324138	rs28399637	G	A	3185.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:50,149:0.75:199
chr19	45349963	rs2306149	C	A	3988.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:3,181:0.98:184
chr19	45381917	rs3729640	C	T	3154.77	.	AC=1;AF=0.500;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	0/1:210,162:0.44:372
chr19	45385759	rs3745150	G	C	100.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:15,6:0.29:21
chr19	45389224	rs283814	A	G	16947.77	.	AC=2;AF=1.00;AN=2;DB;DP=653;MQ=59.99;set=Intersection	GT:AD:AF:DP	1/1:0,647:1.00:647
chr19	45404431	rs741780	T	C	925.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:134,56:0.29:190
chr19	45404691	rs405697	A	G	723.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:87,43:0.33:130
chr19	45409167	rs440446	C	G	203.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:42,14:0.25:56
chr19	45430280	rs5112	C	G	665.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:39,33:0.46:72
chr19	45430994	.	TACAACA	T	9217.73	.	AC=1;AF=0.500;AN=2;DP=413;set=Intersection	GT:AD:AF:DP	0/1:155,241:0.61:396
chr19	45476422	rs204481	T	C	10310.77	.	AC=2;AF=1.00;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	1/1:0,373:1.00:373
chr19	45477910	rs11318909	CT	C	3889.73	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr19	45488434	rs204472	A	G	3998.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr19	45488567	rs204471	T	C	6853.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr19	45489548	rs58800134	A	AG	2039.73	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr19	45490636	rs204468	T	C	10506.77	.	AC=2;AF=1.00;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	1/1:2,392:0.99:394
chr19	45493635	rs875255	C	G	2994.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr19	45494247	rs11405080	A	AC	13700.73	.	AC=2;AF=1.00;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	1/1:0,389:1.00:389
chr19	45494349	rs11333249	TC	T	3847.73	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr19	45496303	rs9193	T	C	5523.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr19	45506732	.	CAAAA	C	938.73	.	AC=1;AF=0.500;AN=2;ClippingRankSum=0.000;DP=62;ExcessHet=3.0103;FS=20.434;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.90;SOR=1.836;set=HC	GT:AD:AF:DP	0/1:6,35:0.85:41
chr19	45506772	rs7251460	T	A	4844.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.33;SOR=0.715;set=HC	GT:AD:AF:DP	1/1:0,184:1.00:184
chr19	45513146	rs150557566	GGCCTTC	G	2250.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.879;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=3.625;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=42.47;ReadPosRankSum=-1.537;SOR=0.726;set=HC	GT:AD:AF:DP	1/1:1,52:0.98:53
chr19	45515055	.	TGAGAGAGAGAGA	T	144.94	.	AC=2;AF=1.00;AN=2;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr19	45515069	rs62117221	A	T	153.98	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.70;QD=38.49;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr19	45515071	.	A	T	153.98	.	AC=2;AF=1.00;AN=2;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.70;QD=38.49;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr19	45515073	.	A	T	153.98	.	AC=2;AF=1.00;AN=2;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.70;QD=38.49;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr19	45528573	rs34954034	C	T	3455.77	.	AC=1;AF=0.500;AN=2;DB;DP=576;set=Intersection	GT:AD:AF:DP	0/1:368,196:0.35:564
chr19	45535672	.	C	CA	63.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.779;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.93;ReadPosRankSum=0.586;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:23,10:0.30:33
chr19	45536036	rs10424046	C	G	882.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:13,33:0.72:46
chr19	45537385	rs182212750	C	T	78.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.544;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=4.775;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.15;ReadPosRankSum=1.317;SOR=2.066;set=HC	GT:AD:AF:DP	0/1:13,6:0.32:19
chr19	45537417	rs143167603	AAAAT	A,AAAATAAATAAAT	1163.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=40.13;SOR=1.688;set=HC	GT:AD:AF:DP	1/2:0,16,13:0.55,0.45:29
chr19	45537779	rs2230682	C	T	1199.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:125,67:0.35:192
chr19	45540616	rs184791402	A	C	1672.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:159,92:0.37:251
chr19	45561063	rs4803794	A	G	6668.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr19	45571579	.	ACC	A	93.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.847;ClippingRankSum=-0.000;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.41;ReadPosRankSum=0.497;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:5,4:0.44:9
chr19	45571781	rs10445571	T	C	8918.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.004;ClippingRankSum=0.000;DB;DP=345;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.39;ReadPosRankSum=0.577;SOR=0.754;set=HC	GT:AD:AF:DP	1/1:2,336:0.99:338
chr19	45571900	rs34337168	G	GCC	1930.73	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:40,51:0.56:91
chr19	45571903	rs36097205	G	C	1982.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:40,50:0.56:90
chr19	45572247	rs376538298	CA	C	252.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.482;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=6.539;MLEAC=1;MLEAF=0.500;MQ=60.63;MQRankSum=1.810;QD=3.83;ReadPosRankSum=-2.560;SOR=1.698;set=HC	GT:AD:AF:DP	0/1:38,28:0.42:66
chr19	45573251	rs112812697	G	A	1720.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:131,88:0.40:219
chr19	45575663	rs61753954	T	G	1441.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.250;ClippingRankSum=0.000;DB;DP=343;ExcessHet=3.0103;FS=0.945;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.34;ReadPosRankSum=0.465;SOR=0.623;set=HC	GT:AD:AF:DP	0/1:242,90:0.27:332
chr19	45593289	rs76007960	G	T	1893.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:198,101:0.34:299
chr19	45596635	rs75282681	A	G	1599.77	.	AC=1;AF=0.500;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	0/1:221,100:0.31:321
chr19	45596886	rs75350052	C	T	973.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:73,44:0.38:117
chr19	45643890	rs2041262	T	C	4478.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr19	45645553	rs112401916	G	A	3382.77	.	AC=1;AF=0.500;AN=2;DB;DP=534;set=Intersection	GT:AD:AF:DP	0/1:337,188:0.36:525
chr19	45649503	rs112250728	T	TGTAA	3806.73	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:60,97:0.62:157
chr19	45655333	rs28469095	T	C	1716.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:36,74:0.67:110
chr19	45655647	rs117934605	G	T	1976.77	.	AC=1;AF=0.500;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	0/1:243,110:0.31:353
chr19	45667694	rs79323322	G	T	170.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:14,9:0.39:23
chr19	45668292	rs77838861	C	T	1491.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:146,73:0.33:219
chr19	45668327	rs10410833	C	T	2651.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:59,108:0.65:167
chr19	45681560	rs7254936	T	C	10702.77	.	AC=2;AF=1.00;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	1/1:1,404:1.00:405
chr19	45716678	rs346740	G	C	1842.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:165,102:0.38:267
chr19	45719493	rs76738189	T	C	3227.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:70,134:0.66:204
chr19	45721596	rs3826909	G	A	1056.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:22,48:0.69:70
chr19	45769386	rs2240671	G	C	570.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.243;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=2.922;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.24;ReadPosRankSum=-0.816;SOR=0.406;set=HC	GT:AD:AF:DP	0/1:76,33:0.30:109
chr19	45769575	rs2240672	G	A	1073.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:148,64:0.30:212
chr19	45774680	rs12984234	A	G	1857.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:191,100:0.34:291
chr19	45781081	.	TTGTG	T,TTG	640.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.525;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=25.63;ReadPosRankSum=-0.646;SOR=3.611;set=HC	GT:AD:AF:DP	1/2:1,8,16:0.32,0.64:25
chr19	45797593	rs34313092	T	C	1515.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:178,86:0.33:264
chr19	45801018	rs173179	T	C	10392.77	.	AC=2;AF=1.00;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	1/1:0,375:1.00:375
chr19	45801337	rs138525840	T	TTCC	1937.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.216;ClippingRankSum=0.000;DB;DP=269;ExcessHet=3.0103;FS=9.991;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.665;QD=8.50;ReadPosRankSum=-0.707;SOR=1.015;set=HC	GT:AD:AF:DP	0/1:167,61:0.27:228
chr19	45810035	rs4884	A	G	2989.77	.	AC=1;AF=0.500;AN=2;DB;DP=618;set=Intersection	GT:AD:AF:DP	0/1:432,183:0.30:615
chr19	45815313	.	C	T	338.77	.	AC=1;AF=0.500;AN=2;DP=44;set=Intersection	GT:AD:AF:DP	0/1:26,17:0.40:43
chr19	45818628	rs377993	A	G	254.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:30,13:0.30:43
chr19	45818835	rs1133190	A	G	1541.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:194,89:0.31:283
chr19	45820927	rs12976956	G	A	592.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:102,36:0.26:138
chr19	45850096	.	C	CCCTCCTTAGAATCCCACAGTCCCCAAGAT	2620.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.372;ClippingRankSum=0.000;DP=337;ExcessHet=3.0103;FS=4.665;MLEAC=1;MLEAF=0.500;MQ=61.55;MQRankSum=9.565;QD=14.56;ReadPosRankSum=0.618;SOR=0.436;set=HC	GT:AD:AF:DP	0/1:107,73:0.41:180
chr19	45850598	rs11418793	C	CA	210.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.800;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.72;MQRankSum=0.000;QD=3.98;ReadPosRankSum=2.711;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:32,21:0.40:53
chr19	45852074	rs369638220	G	A	2991.77	.	AC=1;AF=0.500;AN=2;DB;DP=529;set=Intersection	GT:AD:AF:DP	0/1:351,169:0.33:520
chr19	45853517	rs61513187	CA	C	124.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.928;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=3.901;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.12;ReadPosRankSum=0.539;SOR=0.202;set=HC	GT:AD:AF:DP	0/1:24,16:0.40:40
chr19	45854246	rs371326680	G	A	1213.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.131;ClippingRankSum=0.000;DB;DP=226;ExcessHet=3.0103;FS=1.763;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.52;ReadPosRankSum=-0.388;SOR=0.545;set=HC	GT:AD:AF:DP	0/1:145,75:0.34:220
chr19	45855055	rs377222215	A	AC	659.73	.	AC=1;AF=0.500;AN=2;DB;DP=124;MQ=60.09;set=Intersection	GT:AD:AF:DP	0/1:78,34:0.30:112
chr19	45856468	rs238417	G	C	1122.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.129;ClippingRankSum=0.000;DB;DP=245;ExcessHet=3.0103;FS=1.775;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.72;ReadPosRankSum=0.345;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:172,66:0.28:238
chr19	45858245	rs3916868	C	T	738.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:75,39:0.34:114
chr19	45859072	rs35665496	CT	C	325.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.012;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=1.098;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=2.106;QD=4.23;ReadPosRankSum=0.600;SOR=0.884;set=HC	GT:AD:AF:DP	0/1:39,38:0.49:77
chr19	45989473	rs73567088	G	T	1511.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr19	45998247	rs10401270	A	G	6152.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:2,233:0.99:235
chr19	46003068	rs35446288	A	G	2090.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr19	46003399	rs147723657	C	CT	849.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.402;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=2.177;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=0.000;QD=15.74;ReadPosRankSum=1.135;SOR=1.662;set=HC	GT:AD:AF:DP	1/1:6,48:0.89:54
chr19	46004006	rs60969039	G	A	1646.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr19	46005564	rs73568912	T	A	589.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr19	46005593	rs5027739	C	A	60.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.09;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr19	46026970	rs11880111	T	A	4038.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:1,141:0.99:142
chr19	46027681	.	C	CAA	1575.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.759;ClippingRankSum=0.000;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.84;ReadPosRankSum=-0.370;SOR=2.147;set=HC	GT:AD:AF:DP	1/1:2,67:0.97:69
chr19	46027752	rs4802260	C	T	7774.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr19	46029187	rs56216986	T	C	4106.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr19	46032735	rs149252540	CAG	C	17356.73	.	AC=2;AF=1.00;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	1/1:2,393:0.99:395
chr19	46057081	rs3826860	A	G	16532.77	.	AC=2;AF=1.00;AN=2;DB;DP=639;set=Intersection	GT:AD:AF:DP	1/1:0,632:1.00:632
chr19	46087812	rs62111684	C	G	1022.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:18,44:0.71:62
chr19	46094597	rs3745820	G	A	13304.77	.	AC=2;AF=1.00;AN=2;DB;DP=520;set=Intersection	GT:AD:AF:DP	1/1:0,517:1.00:517
chr19	46125008	.	CT	C	71.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.283;ClippingRankSum=0.000;DP=136;ExcessHet=3.0103;FS=0.994;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=1.638;QD=0.75;ReadPosRankSum=0.876;SOR=0.881;set=HC	GT:AD:AF:DP	0/1:74,22:0.23:96
chr19	46145025	rs2286756	G	T	1409.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.013;ClippingRankSum=0.000;DB;DP=301;ExcessHet=3.0103;FS=1.129;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.80;ReadPosRankSum=-0.221;SOR=0.816;set=HC	GT:AD:AF:DP	0/1:213,81:0.28:294
chr19	46148386	rs11670462	C	T	478.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:13,19:0.59:32
chr19	46175976	rs13306396	TATC	T	1123.73	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:18,31:0.63:49
chr19	46177235	rs55669001	T	C	785.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:16,30:0.65:46
chr19	46180150	rs4803846	A	G	6221.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr19	46180184	rs11672660	C	T	4546.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:113,204:0.64:317
chr19	46180414	rs34783010	G	T	1143.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:15,44:0.75:59
chr19	46181392	rs1800437	G	C	794.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:11,29:0.72:40
chr19	46191828	rs10403723	C	T	1386.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.650;ClippingRankSum=0.000;DB;DP=338;ExcessHet=3.0103;FS=0.450;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.16;ReadPosRankSum=0.451;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:244,89:0.27:333
chr19	46192367	rs55742289	T	TC	1683.73	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:179,77:0.30:256
chr19	46192403	rs28396273	T	A	1986.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:246,114:0.32:360
chr19	46195832	.	C	T	1227.77	.	AC=1;AF=0.500;AN=2;DP=81;set=Intersection	GT:AD:AF:DP	0/1:28,50:0.64:78
chr19	46196634	rs2302593	C	G	1858.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr19	46199106	rs34362798	CT	C	279.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.551;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.48;ReadPosRankSum=0.643;SOR=0.409;set=HC	GT:AD:AF:DP	0/1:9,24:0.73:33
chr19	46202172	rs2287019	C	T	3702.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:80,156:0.66:236
chr19	46204938	rs4803847	C	T	4416.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr19	46205050	rs4803848	T	C	8460.77	.	AC=1;AF=0.500;AN=2;DB;DP=511;set=Intersection	GT:AD:AF:DP	0/1:135,371:0.73:506
chr19	46206425	rs11672416	T	C	1667.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:41,60:0.59:101
chr19	46214700	.	T	TA	77.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.279;ClippingRankSum=0.000;DP=214;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=2.114;QD=0.39;ReadPosRankSum=0.190;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:164,35:0.18:199
chr19	46238555	rs2041975	T	C	498.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:31,23:0.43:54
chr19	46248407	rs10404220	G	A	1673.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.016;ClippingRankSum=0.000;DB;DP=226;ExcessHet=3.0103;FS=3.068;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.54;ReadPosRankSum=0.115;SOR=0.515;set=HC	GT:AD:AF:DP	0/1:130,92:0.41:222
chr19	46258024	rs918164	A	G	448.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:67,28:0.29:95
chr19	46260375	rs4802275	C	T	326.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:47,20:0.30:67
chr19	46265029	rs8112282	C	T	2500.77	.	AC=1;AF=0.500;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	0/1:229,135:0.37:364
chr19	46265047	rs139434566	A	ATCCAGC	1880.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.440;ClippingRankSum=0.000;DB;DP=304;ExcessHet=3.0103;FS=5.224;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.40;ReadPosRankSum=0.884;SOR=1.139;set=HC	GT:AD:AF:DP	0/1:112,53:0.32:165
chr19	46269076	rs2014576	G	A	1653.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:158,85:0.35:243
chr19	46269313	rs2014377	G	C	645.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:107,42:0.28:149
chr19	46274171	rs635299	A	C	176.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:13,10:0.43:23
chr19	46274972	rs915915	A	C	3272.77	.	AC=1;AF=0.500;AN=2;DB;DP=469;set=Intersection	GT:AD:AF:DP	0/1:288,167:0.37:455
chr19	46276056	rs16939	C	A	397.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:53,24:0.31:77
chr19	46281745	rs1799894	A	G	1227.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:128,71:0.36:199
chr19	46287200	rs617988	C	G	535.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:68,30:0.31:98
chr19	46288706	rs3760843	A	T	283.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:11,13:0.54:24
chr19	46289392	rs8110017	G	C	1490.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:141,74:0.34:215
chr19	46289509	rs11545326	G	A	2654.73	.	AC=1;AF=0.500;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	0/1:225,139:0.38:364
chr19	46313758	rs10402263	G	C	461.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:67,26:0.28:93
chr19	46313825	rs10407137	A	T	1611.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:164,87:0.35:251
chr19	46317709	rs74450753	G	C	443.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:5,16:0.76:21
chr19	46318963	rs3810331	C	A	3358.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr19	46326200	rs12976060	A	G	3072.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr19	46327185	rs7252416	G	C	2670.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr19	46327209	rs11284049	CT	C	1792.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr19	46329438	rs7246155	G	A	2318.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr19	46331302	rs4239535	C	G	2045.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr19	46332194	rs3745929	C	T	2906.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr19	46333632	rs4516331	G	A	1485.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr19	46334955	rs4803866	C	T	3209.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr19	46352203	rs2303013	C	T	1100.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:25,48:0.66:73
chr19	46357313	rs11670136	T	C	2201.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:47,95:0.67:142
chr19	46366371	rs151045853	TCCG	T	3639.73	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:71,93:0.57:164
chr19	46367901	rs1363538	T	C	3044.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr19	46376217	rs3810327	C	A	10152.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.117;ClippingRankSum=0.000;DB;DP=714;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.38;ReadPosRankSum=-0.359;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:252,454:0.64:706
chr19	46394187	rs62111265	C	T	1132.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:35,55:0.61:90
chr19	46404428	rs35633692	G	A	2314.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:48,102:0.68:150
chr19	46404579	rs10423899	A	G	4056.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.377;ClippingRankSum=0.000;DB;DP=283;ExcessHet=3.0103;FS=2.109;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.49;ReadPosRankSum=-0.646;SOR=0.554;set=HC	GT:AD:AF:DP	0/1:97,183:0.65:280
chr19	46443739	rs28742045	T	G	4975.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr19	46443886	rs1047061	C	A	3856.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr19	46498353	rs892217	C	G	3761.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr19	46498827	rs746401	G	A	1484.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.24;SOR=2.712;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr19	46498835	rs55951953	C	T	1341.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.73;SOR=2.985;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr19	46511548	rs2287305	T	C	3090.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.84;SOR=0.748;set=HC	GT:AD:AF:DP	1/1:0,111:1.00:111
chr19	46520026	rs2287306	A	G	8481.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:2,325:0.99:327
chr19	46526298	rs2072562	T	G	612.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:48,28:0.37:76
chr19	46543249	rs756401	T	C	930.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:78,50:0.39:128
chr19	46546250	rs4803890	G	A	829.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.570;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=0.652;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.10;ReadPosRankSum=-1.514;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:85,51:0.38:136
chr19	46627592	rs2287307	G	A	1491.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:203,84:0.29:287
chr19	46640551	rs1990765	C	A	3557.77	.	AC=1;AF=0.500;AN=2;DB;DP=595;set=Intersection	GT:AD:AF:DP	0/1:383,201:0.34:584
chr19	46652396	rs138711585	TCTCTCTCTCTCC	T	473.73	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:27,15:0.36:42
chr19	46664168	rs2270403	G	A	4801.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:87,210:0.71:297
chr19	46664400	rs10408162	A	G	1255.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:152,73:0.32:225
chr19	46733912	rs2286802	A	G	3809.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.35;SOR=1.075;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr19	46733916	rs2286803	G	A	3809.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.82;SOR=0.979;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr19	46734022	rs73051957	C	G	2527.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:74,119:0.62:193
chr19	46734255	rs2286804	A	C	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.669;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=2.488;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.97;ReadPosRankSum=0.500;SOR=1.284;set=HC	GT:AD:AF:DP	0/1:30,6:0.17:36
chr19	46811984	rs2311054	A	G	1908.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr19	46812126	rs757638	A	G	1517.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr19	46812336	rs759299	G	A	5678.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:2,206:0.99:208
chr19	46815297	rs8101216	T	C	12366.77	.	AC=2;AF=1.00;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	1/1:0,448:1.00:448
chr19	46815499	rs8101480	T	C	20565.77	.	AC=2;AF=1.00;AN=2;DB;DP=792;set=Intersection	GT:AD:AF:DP	1/1:0,769:1.00:769
chr19	46815705	rs3752207	A	C	15915.77	.	AC=2;AF=1.00;AN=2;DB;DP=596;set=Intersection	GT:AD:AF:DP	1/1:0,584:1.00:584
chr19	46815969	rs146459631	G	GGTGTGT,GGTGTGTGT	1170.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=47;set=Intersection	GT:AF:DP	1/2:0.24,0.76:29
chr19	46857257	rs41275764	G	A	2726.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:1,105:0.99:106
chr19	46878989	rs4239538	G	A	3688.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:16,152:0.90:168
chr19	46887007	rs1024781	G	C	9634.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:0,352:1.00:352
chr19	46887199	rs4803937	A	G	4098.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:1,136:0.99:137
chr19	46892111	rs759290	C	T	3634.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.78;SOR=2.679;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr19	46892118	rs3815505	C	G	3361.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.43;SOR=3.198;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr19	46892168	rs8106745	T	C	795.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr19	46893238	rs759291	A	C	11653.77	.	AC=2;AF=1.00;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	1/1:0,436:1.00:436
chr19	46893465	rs2311213	A	G	8290.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr19	46972967	rs2288916	G	C	665.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:47,31:0.40:78
chr19	46974003	rs7248888	C	T	3226.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:81,144:0.64:225
chr19	46974307	rs3826852	C	T	6613.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr19	47028898	rs3745792	C	T	2928.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:80,124:0.61:204
chr19	47030234	rs62136886	T	C	160.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.052;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=5.527;MLEAC=1;MLEAF=0.500;MQ=54.11;MQRankSum=-8.481;QD=0.78;ReadPosRankSum=1.474;SOR=1.268;set=HC	GT:AD:AF:DP	0/1:182,25:0.12:207
chr19	47030432	rs3745795	T	C	3057.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr19	47104535	rs150954567	T	A	301.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:7,15:0.68:22
chr19	47105585	rs35630463	A	AT	730.73	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:122,52:0.30:174
chr19	47109011	rs3729510	T	C	558.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:64,29:0.31:93
chr19	47111663	rs3729760	T	C	2010.77	.	AC=1;AF=0.500;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	0/1:236,107:0.31:343
chr19	47112648	rs10113	T	C	5215.77	.	AC=1;AF=0.500;AN=2;DB;DP=888;set=Intersection	GT:AD:AF:DP	0/1:576,303:0.34:879
chr19	47137162	rs1005774	C	A	1228.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr19	47137459	rs12974613	C	T	3257.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:56,149:0.73:205
chr19	47153145	rs375074031	CA	C	779.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.306;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=2.252;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=0.775;QD=8.57;ReadPosRankSum=1.163;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:22,69:0.76:91
chr19	47177913	rs314665	A	G	17471.77	.	AC=2;AF=1.00;AN=2;DB;DP=678;set=Intersection	GT:AD:AF:DP	1/1:0,674:1.00:674
chr19	47193850	rs314671	T	C	2718.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:43,108:0.72:151
chr19	47214411	rs432157	C	T	2935.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.733;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=3.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.70;ReadPosRankSum=0.311;SOR=0.453;set=HC	GT:AD:AF:DP	0/1:59,128:0.68:187
chr19	47223949	rs313841	G	A	5909.77	.	AC=1;AF=0.500;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	0/1:140,269:0.66:409
chr19	47228985	rs313844	G	C	833.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr19	47239972	rs78575228	T	C	3408.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:119,156:0.57:275
chr19	47249351	.	A	AGGCCG	1848.73	.	AC=1;AF=0.500;AN=2;DP=146;set=Intersection	GT:AD:AF:DP	0/1:62,76:0.55:138
chr19	47258842	rs2287717	C	T	5982.77	.	AC=1;AF=0.500;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	0/1:181,273:0.60:454
chr19	47280789	rs313835	C	T	566.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:14,25:0.64:39
chr19	47282240	rs3745609	A	G	6348.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.291;ClippingRankSum=0.000;DB;DP=263;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.00;ReadPosRankSum=0.543;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:92,162:0.64:254
chr19	47282245	rs56385874	C	T	6255.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.161;ClippingRankSum=0.000;DB;DP=248;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.17;ReadPosRankSum=-1.383;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:82,157:0.66:239
chr19	47285589	rs1644343	A	C	595.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:8,28:0.78:36
chr19	47287169	rs313852	G	A	1587.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:18,63:0.78:81
chr19	47287939	rs313853	T	C	1589.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:43,66:0.61:109
chr19	47291174	rs3027956	G	C	1875.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.035;ClippingRankSum=0.000;DB;DP=403;ExcessHet=3.0103;FS=0.408;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.74;ReadPosRankSum=-0.231;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:286,110:0.28:396
chr19	47349459	.	T	C	409.77	.	AC=1;AF=0.500;AN=2;DP=82;set=Intersection	GT:AD:AF:DP	0/1:56,25:0.31:81
chr19	47524151	.	GCC	G	134.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.623;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=16.580;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.93;ReadPosRankSum=2.881;SOR=0.580;set=HC	GT:AD:AF:DP	0/1:10,7:0.41:17
chr19	47536154	.	A	G	121.77	.	AC=1;AF=0.500;AN=2;DP=35;set=Intersection	GT:AD:AF:DP	0/1:26,9:0.26:35
chr19	47543774	rs3745615	G	A	7849.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:1,292:1.00:293
chr19	47548327	rs10423289	A	T	1699.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.894;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=28.81;ReadPosRankSum=-0.588;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:1,58:0.98:59
chr19	47548678	rs889169	G	A	5513.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr19	47549155	rs889170	AT	GC	7536.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;JOINED;set=Intersection	GT:AD:AF:DP	1/1:2,277:0.99:279
chr19	47549454	rs11083857	C	T	236.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.763;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.48;ReadPosRankSum=1.647;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:52,16:0.24:68
chr19	47549791	rs1862499	A	G	3065.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:2,122:0.98:124
chr19	47584699	rs3745619	C	T	129.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:26,9:0.26:35
chr19	47585517	rs7250850	G	C	2402.77	.	AC=1;AF=0.500;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	0/1:281,134:0.32:415
chr19	47585698	rs7251104	G	C	355.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:59,18:0.23:77
chr19	47587772	rs2303107	G	A	1777.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:162,94:0.37:256
chr19	47588202	rs7248181	G	T	394.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.859;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=2.795;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.49;ReadPosRankSum=-0.141;SOR=0.327;set=HC	GT:AD:AF:DP	0/1:65,23:0.26:88
chr19	47597102	rs10408163	T	C	232.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:36,14:0.28:50
chr19	47634313	rs177918	T	G	1060.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr19	47761646	rs12985905	G	C	3797.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:72,167:0.70:239
chr19	47774987	.	TGTGCGCGCGCGCGCGC	T	566	.	AC=1;AF=0.500;AN=2;BRF=0.43;FR=0.5000;HP=2;HapScore=1;MGOF=26;MMLQ=22;MQ=58.6;NF=0;NR=15;PP=566;QD=37.9333333333;SC=TGTGTGTGTGTGTGCGCGCGC;SbPval=1.0;Source=Platypus;TC=19;TCF=0;TCR=19;TR=15;WE=47775010;WS=47774969;set=Platypus	GT:AD:AF:DP	1/0:4,15:0.79:19
chr19	47778054	rs34227852	G	GC	710.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr19	47778101	rs35912982	T	TC	1377.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr19	47813165	rs11670330	G	A	3047.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:66,142:0.68:208
chr19	47823038	rs4467185	G	A	9432.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	1/1:0,344:1.00:344
chr19	47823484	rs4804049	T	C	11512.77	.	AC=2;AF=1.00;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	1/1:0,433:1.00:433
chr19	47823871	rs11880097	G	T	13459.77	.	AC=2;AF=1.00;AN=2;DB;DP=505;set=Intersection	GT:AD:AF:DP	1/1:0,499:1.00:499
chr19	47824134	rs201265074	G	A	1229.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:121,57:0.32:178
chr19	47885180	rs889167	A	G	8010.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr19	47916598	rs11673488	C	T	523.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr19	47920017	rs371897759	C	T	4664.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:98,198:0.67:296
chr19	47922426	rs62130535	G	A	430.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr19	47933190	rs142312177	A	AG	2069.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr19	47933257	rs73940834	G	A	445.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.663;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=0.841;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.760;QD=3.57;ReadPosRankSum=0.696;SOR=0.559;set=HC	GT:AD:AF:DP	0/1:94,31:0.25:125
chr19	47933728	rs8104926	A	G	2176.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:66,94:0.59:160
chr19	47933810	rs41275768	G	A	679.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:11,26:0.70:37
chr19	47935352	rs4801722	T	C	7020.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr19	47935572	rs7259674	G	A	8597.77	.	AC=1;AF=0.500;AN=2;DB;DP=545;MQ=60.02;set=Intersection	GT:AD:AF:DP	0/1:161,373:0.70:534
chr19	47944710	rs2254560	T	C	2090.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:49,90:0.65:139
chr19	47969394	rs12459087	G	A	9364.77	.	AC=1;AF=0.500;AN=2;DB;DP=669;set=Intersection	GT:AD:AF:DP	0/1:247,415:0.63:662
chr19	47980153	rs2293424	G	A	1101.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:97,55:0.36:152
chr19	47987445	.	G	A	909.77	.	AC=1;AF=0.500;AN=2;DP=198;set=Intersection	GT:AD:AF:DP	0/1:130,58:0.31:188
chr19	48043660	rs201680757	G	GT	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.046;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=3.304;QD=0.37;ReadPosRankSum=0.715;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:80,15:0.16:95
chr19	48182508	rs2914439	G	A	1572.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:44,65:0.60:109
chr19	48182522	rs56106931	A	G	936.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:92,48:0.34:140
chr19	48182568	rs2911005	C	T	7499.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr19	48182787	rs4802382	C	T	704.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:125,46:0.27:171
chr19	48182946	rs2911006	T	C	3251.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr19	48183114	rs2914438	A	G	4920.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr19	48183771	rs1035938	C	T	7056.77	.	AC=1;AF=0.500;AN=2;DB;DP=1329;set=Intersection	GT:AD:AF:DP	0/1:907,416:0.31:1323
chr19	48184474	rs3745762	C	T	1990.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:244,116:0.32:360
chr19	48184547	rs889337	G	A	5490.77	.	AC=1;AF=0.500;AN=2;DB;DP=361;MQ=60.03;set=Intersection	GT:AD:AF:DP	0/1:119,242:0.67:361
chr19	48184642	rs58014830	TG	T	3015.73	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr19	48185147	rs2303755	G	A	468.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.884;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.935;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.89;ReadPosRankSum=-0.553;SOR=0.881;set=HC	GT:AD:AF:DP	0/1:37,31:0.46:68
chr19	48197218	rs2914428	A	C	932.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:22,39:0.64:61
chr19	48198557	rs2241614	G	A	449.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr19	48198675	rs13346368	A	G	483.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.334;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.70;ReadPosRankSum=-1.048;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:140,39:0.22:179
chr19	48198796	rs2241613	C	G	2109.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:24,87:0.78:111
chr19	48198817	rs2241612	T	A	3742.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr19	48198833	rs2241611	G	C	1623.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:12,64:0.84:76
chr19	48202125	rs7248050	C	G	7910.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr19	48205288	rs8100472	G	A	698.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.967;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=11.236;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.68;ReadPosRankSum=-2.954;SOR=1.520;set=HC	GT:AD:AF:DP	0/1:87,36:0.29:123
chr19	48205725	rs3745760	T	C	265.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:15,12:0.44:27
chr19	48239557	rs11669035	T	G	2097.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr19	48244045	rs34197064	C	CT	3050.73	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr19	48244194	rs7255434	A	G	7194.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr19	48244569	rs3745758	G	A	14622.77	.	AC=2;AF=1.00;AN=2;DB;DP=529;MQ=60.12;set=Intersection	GT:AD:AF:DP	1/1:0,523:1.00:523
chr19	48244692	rs3833256	C	CG	3152.73	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr19	48249117	rs6146540	CGTCGGGG	C	71.25	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.78;QD=23.75;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr19	48250320	rs2334293	G	C	2923.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr19	48250414	rs3745756	A	G	1033.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr19	48253579	rs3745754	A	G	12942.77	.	AC=2;AF=1.00;AN=2;DB;DP=493;set=Intersection	GT:AD:AF:DP	1/1:0,490:1.00:490
chr19	48253667	rs3786780	C	G	3547.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr19	48254392	rs10402957	T	C	4806.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr19	48255804	rs1042558	A	G	7290.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr19	48258551	rs10406879	T	C	3993.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr19	48258578	rs10405135	A	G	4337.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr19	48258717	rs1804994	A	G	1372.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr19	48258772	rs11083895	G	A	824.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr19	48258826	rs10411523	G	A	622.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr19	48260079	rs889142	T	C	5557.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr19	48282077	rs111841672	C	CGCAGCGG	7011.73	.	AC=2;AF=1.00;AN=2;DB;DP=165;MQ=62.89;set=Intersection	GT:AD:AF:DP	1/1:1,160:0.99:161
chr19	48282172	rs1862485	T	C	3446.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr19	48284025	rs34362700	C	CG	6665.73	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr19	48307005	rs202154324	A	G	32.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.50;QD=16.37;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr19	48321645	.	C	CTCCA	1703.73	.	AC=2;AF=1.00;AN=2;DP=42;set=Intersection	GT:AD:AF:DP	1/1:1,39:0.97:40
chr19	48337812	rs62128766	C	T	2389.77	.	AC=1;AF=0.500;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:195,125:0.39:320
chr19	48337897	rs62128767	G	A	644.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:45,30:0.40:75
chr19	48363390	rs200234544	C	A	344.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.788;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=2.017;MLEAC=1;MLEAF=0.500;MQ=41.92;MQRankSum=-0.049;QD=18.15;ReadPosRankSum=0.219;SOR=0.796;set=HC	GT:AD:AF:DP	0/1:5,14:0.74:19
chr19	48382480	rs2547238	G	C	4468.77	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:127,197:0.61:324
chr19	48389363	rs296361	G	A	2279.77	.	AC=1;AF=0.500;AN=2;DB;DP=472;set=Intersection	GT:AD:AF:DP	0/1:332,136:0.29:468
chr19	48389425	rs11083907	A	G	10756.77	.	AC=2;AF=1.00;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	1/1:0,406:1.00:406
chr19	48479852	rs372341553	AAC	A	225.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.430;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=9.344;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.45;ReadPosRankSum=1.220;SOR=1.683;set=HC	GT:AD:AF:DP	0/1:8,27:0.77:35
chr19	48484150	rs10422554	G	A	2305.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr19	48495128	rs11671612	T	C	410.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.143;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=1.280;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.10;ReadPosRankSum=-2.005;SOR=0.963;set=HC	GT:AD:AF:DP	0/1:17,20:0.54:37
chr19	48495304	rs60213124	G	A	1727.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:38,80:0.68:118
chr19	48512121	rs7249129	G	A	1918.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr19	48522894	rs2115100	C	G	836.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr19	48523197	rs2303691	C	A	1615.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr19	48525507	rs2303690	G	A	7546.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr19	48533727	rs1171097	G	C	1686.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:25,64:0.72:89
chr19	48533847	rs199946129	GA	G	3622.73	.	AC=1;AF=0.500;AN=2;DB;DP=366;MQ=60.06;set=Intersection	GT:AD:AF:DP	0/1:113,230:0.67:343
chr19	48542414	rs891015	C	A	1812.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:47,80:0.63:127
chr19	48543774	rs8102084	C	G	267.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:24,15:0.38:39
chr19	48543862	rs8105198	G	A	987.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:102,55:0.35:157
chr19	48544753	rs3745745	G	A	468.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:48,28:0.37:76
chr19	48551546	rs9226	A	T	340.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:30,17:0.36:47
chr19	48558003	rs744399	A	C	94.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:15,6:0.29:21
chr19	48558342	rs3217328	TCTCCAGAAGACCC	T	222.73	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:12,7:0.37:19
chr19	48565468	rs4802425	G	T	1150.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:135,66:0.33:201
chr19	48571026	rs2307278	G	A	1239.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:27,55:0.67:82
chr19	48581142	rs1019786	C	T	610.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:23,27:0.54:50
chr19	48581253	rs1019785	C	G	135.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr19	48588148	rs431234	C	G	1001.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:122,57:0.32:179
chr19	48593591	rs3745741	G	C	4643.77	.	AC=1;AF=0.500;AN=2;DB;DP=785;set=Intersection	GT:AD:AF:DP	0/1:528,249:0.32:777
chr19	48598823	rs156631	A	G	997.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:120,58:0.33:178
chr19	48598916	rs156632	A	G	2988.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr19	48601350	rs251685	T	C	2870.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr19	48601454	rs251684	T	C	6907.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr19	48601528	rs251683	G	T	5297.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr19	48601593	rs11432234	A	AT	1410.73	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:1,62:0.98:63
chr19	48602948	rs2303744	T	C	757.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:83,43:0.34:126
chr19	48608598	rs2307279	C	G	497.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:92,31:0.25:123
chr19	48608891	rs1653555	T	C	218.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:21,12:0.36:33
chr19	48609715	rs380359	C	T	1449.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:139,77:0.36:216
chr19	48613544	rs251696	C	A	75.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.609;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.89;ReadPosRankSum=-0.605;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:7,4:0.36:11
chr19	48613602	rs138934663	CA	C	100.73	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:10,9:0.47:19
chr19	48613788	.	T	TGCTCCGGAATCCGGTGCGGAGGCTTGGGCTCCGGAATCCGGTGCGGAGGCTTGG	852.25	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.622;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=56.82;ReadPosRankSum=-1.273;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:1,14:0.93:15
chr19	48621036	rs13436	C	G	1333.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:151,79:0.34:230
chr19	48622427	rs20581	A	G	582.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:103,40:0.28:143
chr19	48622483	rs156647	A	G	593.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.792;ClippingRankSum=0.000;DB;DP=222;ExcessHet=3.0103;FS=2.019;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.69;ReadPosRankSum=1.235;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:172,49:0.22:221
chr19	48622545	rs274883	A	G	385.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.890;ClippingRankSum=0.000;DB;DP=235;ExcessHet=3.0103;FS=3.083;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.66;ReadPosRankSum=0.474;SOR=0.995;set=HC	GT:AD:AF:DP	0/1:192,41:0.18:233
chr19	48624625	rs153023	C	T	1182.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:154,67:0.30:221
chr19	48626604	rs3731007	G	A	1187.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:122,68:0.36:190
chr19	48630700	rs61230848	GCC	G	1162.73	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:50,33:0.40:83
chr19	48634319	rs392891	T	A	1197.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:114,64:0.36:178
chr19	48640234	rs2288880	C	G	1906.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.501;ClippingRankSum=0.000;DB;DP=345;ExcessHet=3.0103;FS=1.362;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.54;ReadPosRankSum=-1.791;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:231,113:0.33:344
chr19	48643124	rs2304136	T	C	1155.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:127,61:0.32:188
chr19	48646883	rs2288878	T	C	1422.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:174,83:0.32:257
chr19	48646993	rs415465	C	T	7545.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr19	48660195	.	CAA	C	30.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.117;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.62;ReadPosRankSum=-0.398;SOR=0.313;set=HC	GT:AD:AF:DP	0/1:13,6:0.32:19
chr19	48668709	rs3730850	A	G	291.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:49,18:0.27:67
chr19	48668830	rs20579	G	A	1248.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;MQ=60.04;set=Intersection	GT:AD:AF:DP	0/1:173,72:0.29:245
chr19	48668966	rs143468290	G	GAA	1269.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.724;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=3.684;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=2.235;QD=8.64;ReadPosRankSum=0.299;SOR=1.054;set=HC	GT:AD:AF:DP	0/1:76,71:0.48:147
chr19	48673304	rs73574169	T	G	1849.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:210,102:0.33:312
chr19	48685877	rs16981771	G	A	3799.77	.	AC=1;AF=0.500;AN=2;DB;DP=670;set=Intersection	GT:AD:AF:DP	0/1:435,223:0.34:658
chr19	48686072	rs2007182	G	A	815.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:52,37:0.42:89
chr19	48686098	rs2007183	G	T	499.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:36,23:0.39:59
chr19	48690906	rs10416739	G	A	38.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr19	48692832	rs10418095	C	A	476.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.347;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=1.172;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.59;ReadPosRankSum=2.860;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:22,23:0.51:45
chr19	48697808	rs34897645	TGG	T	532.73	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:6,14:0.70:20
chr19	48697961	rs12973411	C	T	1392.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:34,62:0.65:96
chr19	48707401	rs3745717	G	T	260.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:39,16:0.29:55
chr19	48707581	rs1965759	G	A	3687.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.353;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=1.534;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.73;ReadPosRankSum=-1.116;SOR=0.858;set=HC	GT:AD:AF:DP	0/1:38,95:0.71:133
chr19	48707581	.	GTG	ATA	2209	.	AC=1;AF=0.500;AN=2;BRF=0.41;FR=0.5000;HP=2;HapScore=1;MGOF=4;MMLQ=21;MQ=60.0;NF=26;NR=40;PP=2209;QD=34.2798162858;SC=GATGGAGGGTGTGCCGGAGGA;SbPval=0.59;Source=Platypus;TC=91;TCF=37;TCR=54;TR=66;WE=48707591;WS=48707571;set=Platypus	GT:AD:AF:DP	1/0:25,66:0.73:91
chr19	48707583	rs1965758	G	A	3687.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.832;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=0.735;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.81;ReadPosRankSum=-0.725;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:37,91:0.71:128
chr19	48707665	rs2015209	G	A	409.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:26,20:0.43:46
chr19	48707714	rs2015211	A	T	204.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:15,11:0.42:26
chr19	48709635	rs8110489	G	A	6782.77	.	AC=1;AF=0.500;AN=2;DB;DP=472;set=Intersection	GT:AD:AF:DP	0/1:160,307:0.66:467
chr19	48715153	rs3745718	T	C	4599.77	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:123,210:0.63:333
chr19	48715269	rs2008521	T	C	2555.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr19	48722180	rs10500299	C	T	5000.77	.	AC=1;AF=0.500;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	0/1:127,221:0.64:348
chr19	48734018	rs2304134	G	A	2359.77	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:235,124:0.35:359
chr19	48735287	rs4802448	A	G	1986.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr19	48736706	rs4802449	G	A	2305.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:53,103:0.66:156
chr19	48737551	rs2288877	T	C	1859.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:35,77:0.69:112
chr19	48737706	rs2043211	A	T	1918.77	.	AC=1;AF=0.500;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	0/1:246,115:0.32:361
chr19	48737764	rs2288876	A	G	4049.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:75,171:0.70:246
chr19	48744025	rs34345721	CA	C	505.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.017;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=0.936;QD=6.93;ReadPosRankSum=0.870;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:26,47:0.64:73
chr19	48744164	rs11670259	C	T	5299.77	.	AC=1;AF=0.500;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	0/1:167,254:0.60:421
chr19	48788923	.	A	AAG	2883.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.298;ClippingRankSum=0.000;DP=134;ExcessHet=3.0103;FS=1.924;MLEAC=1;MLEAF=0.500;MQ=61.83;MQRankSum=3.730;QD=22.35;ReadPosRankSum=-1.269;SOR=1.039;set=HC	GT:AD:AF:DP	0/1:43,86:0.67:129
chr19	48800330	rs74351635	C	T	4699.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.689;ClippingRankSum=0.000;DB;DP=336;ExcessHet=3.0103;FS=1.367;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.24;ReadPosRankSum=1.376;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:120,210:0.64:330
chr19	48800338	rs7252988	A	G	13571.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.10;SOR=0.967;set=HC	GT:AD:AF:DP	1/1:0,376:1.00:376
chr19	48800914	rs35461177	G	A	1861.77	.	AC=1;AF=0.500;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	0/1:227,106:0.32:333
chr19	48806015	rs34540645	C	T	2135.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.687;ClippingRankSum=0.000;DB;DP=451;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.79;ReadPosRankSum=0.781;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:318,128:0.29:446
chr19	48807401	rs56177753	C	T	591.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:58,33:0.36:91
chr19	48823545	rs8107712	G	A	432.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:82,29:0.26:111
chr19	48830286	rs10415654	T	A	831.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.716;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.03;ReadPosRankSum=1.230;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:90,48:0.35:138
chr19	48832554	rs8102349	A	G	1061.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:118,54:0.31:172
chr19	48836673	rs3826828	G	T	353.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.989;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=0.853;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.79;ReadPosRankSum=-0.659;SOR=0.882;set=HC	GT:AD:AF:DP	0/1:101,26:0.20:127
chr19	48845777	rs4275952	G	A	273.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:71,20:0.22:91
chr19	48848702	.	CA	TA	1443	.	AC=1;AF=0.500;AN=2;BRF=0.46;FR=0.5000,0.5000;HP=3;HapScore=2;MGOF=5;MMLQ=25;MQ=59.78;NF=0,1;NR=14,10;PP=1443,622;QD=103.642857143;SC=CAGATACTTTCATTTATTTAT;SbPval=1.0;Source=Platypus;TC=44;TCF=0;TCR=44;TR=14,11;WE=48848710;WS=48848692;set=Platypus	GT:AD:AF:DP	0/1:40,11:0.22:51
chr19	48848702	.	CA	CATTTATTTA	1443	.	AC=1;AF=0.500;AN=2;BRF=0.46;FR=0.5000,0.5000;HP=3;HapScore=2;MGOF=5;MMLQ=25;MQ=59.78;NF=0,1;NR=14,10;PP=1443,622;QD=103.642857143;SC=CAGATACTTTCATTTATTTAT;SbPval=1.0;Source=Platypus;TC=44;TCF=0;TCR=44;TR=14,11;WE=48848710;WS=48848692;set=Platypus	GT:AD:AF:DP	0/1:30,14:0.32:44
chr19	48848702	rs17361438	C	T,CATTTATTT	1633.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=31.42;SOR=2.393;set=HC	GT:AD:AF:DP	1/2:0,23,29:0.44,0.56:52
chr19	48863386	rs438767	C	T	4465.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr19	48893820	.	CAG	C	190.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.468;ClippingRankSum=0.000;DP=100;ExcessHet=3.0103;FS=6.589;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.51;ReadPosRankSum=0.119;SOR=0.991;set=HC	GT:AD:AF:DP	0/1:63,13:0.17:76
chr19	48945880	rs62130268	T	C	1488.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr19	48946325	rs111420822	T	C	317.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.70;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr19	48949286	rs1643487	G	T	1810.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr19	48949766	rs929743	C	G	8472.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr19	48954571	rs1799274	A	T	1137.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr19	48977019	rs1799258	C	T	4598.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr19	49000877	rs72051300	AGCGGTGGCG	A	5640.73	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:83,147:0.64:230
chr19	49090368	rs34482710	T	TA	1482.73	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:7,68:0.91:75
chr19	49096065	rs2302948	C	T	5344.77	.	AC=1;AF=0.500;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	0/1:123,248:0.67:371
chr19	49102399	rs1132054	C	T	1178.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:99,61:0.38:160
chr19	49102782	rs10410524	G	A	1879.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:44,78:0.64:122
chr19	49106995	rs3745728	G	A	1399.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:30,60:0.67:90
chr19	49113029	rs2617803	G	C	1055.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:14,40:0.74:54
chr19	49114236	rs454715	T	G	1464.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr19	49116076	rs2617801	C	G	801.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr19	49116134	rs2617800	T	G	1954.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr19	49116359	rs447802	T	C	3752.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:93,162:0.64:255
chr19	49116438	rs376524	A	G	4580.77	.	AC=1;AF=0.500;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	0/1:133,203:0.60:336
chr19	49116555	rs368654	A	G	5028.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr19	49119900	rs138568775	C	CCAGCACAGCACAGCA	5245.73	.	AC=1;AF=0.500;AN=2;DB;DP=551;set=Intersection	GT:AD:AF:DP	0/1:140,232:0.62:372
chr19	49120252	rs11382518	T	TA	621.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.600;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=4.291;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.000;QD=3.77;ReadPosRankSum=0.294;SOR=1.068;set=HC	GT:AD:AF:DP	0/1:112,53:0.32:165
chr19	49120434	rs369880	C	T	8651.77	.	AC=1;AF=0.500;AN=2;DB;DP=583;set=Intersection	GT:AD:AF:DP	0/1:196,373:0.66:569
chr19	49122248	rs3094287	T	C	4769.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr19	49123875	rs11407052	T	TA	273.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.502;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=1.657;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=0.000;QD=8.83;ReadPosRankSum=1.264;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:9,22:0.71:31
chr19	49131764	rs34630951	A	AAG	6369.73	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:102,173:0.63:275
chr19	49132634	rs3745733	G	A	6493.77	.	AC=1;AF=0.500;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	0/1:128,273:0.68:401
chr19	49134160	rs148306408	C	T	1605.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:133,86:0.39:219
chr19	49141406	rs137896889	AAGAC	A	537.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.275;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=2.274;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.89;ReadPosRankSum=-0.831;SOR=1.029;set=HC	GT:AD:AF:DP	0/1:60,18:0.23:78
chr19	49141532	rs3848543	T	C	224.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.214;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.29;ReadPosRankSum=0.092;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:3,10:0.77:13
chr19	49143025	rs2303147	T	C	749.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.388;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=1.493;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.81;ReadPosRankSum=-1.271;SOR=0.866;set=HC	GT:AD:AF:DP	0/1:87,42:0.33:129
chr19	49148781	rs10426317	C	T	2902.77	.	AC=1;AF=0.500;AN=2;DB;DP=540;set=Intersection	GT:AD:AF:DP	0/1:358,175:0.33:533
chr19	49164952	rs281392	A	G	2301.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:53,100:0.65:153
chr19	49166546	rs116938685	C	G	2430.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.740;ClippingRankSum=0.000;DB;DP=220;ExcessHet=3.0103;FS=6.584;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.25;ReadPosRankSum=-1.049;SOR=0.916;set=HC	GT:AD:AF:DP	0/1:101,115:0.53:216
chr19	49166875	rs371690	G	A	1652.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:28,66:0.70:94
chr19	49168182	rs373002	T	C	343.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:10,14:0.58:24
chr19	49183284	rs3826838	G	A	2438.77	.	AC=1;AF=0.500;AN=2;DB;DP=513;set=Intersection	GT:AD:AF:DP	0/1:362,149:0.29:511
chr19	49206108	rs679574	C	G	935.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:56,38:0.40:94
chr19	49206145	rs516316	G	C	1407.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:102,68:0.40:170
chr19	49206172	rs516246	C	T	1930.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:181,101:0.36:282
chr19	49206417	rs492602	A	G	1570.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:166,80:0.33:246
chr19	49206462	rs681343	C	T	1452.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:126,70:0.36:196
chr19	49206603	rs281377	C	T	3995.77	.	AC=1;AF=0.500;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	0/1:158,188:0.54:346
chr19	49206674	rs601338	G	A	2194.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:163,109:0.40:272
chr19	49206985	rs602662	G	A	3232.77	.	AC=1;AF=0.500;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	0/1:272,165:0.38:437
chr19	49207206	rs485186	A	G	2527.77	.	AC=1;AF=0.500;AN=2;DB;DP=501;set=Intersection	GT:AD:AF:DP	0/1:345,150:0.30:495
chr19	49207255	rs485073	A	G	2794.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.022;ClippingRankSum=0.000;DB;DP=260;ExcessHet=3.0103;FS=5.987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.92;ReadPosRankSum=-0.570;SOR=0.398;set=HC	GT:AD:AF:DP	0/1:176,80:0.31:256
chr19	49207255	.	ATT	GTC	1873	.	AC=1;AF=0.500;AN=2;BRF=0.45;FR=0.5000;HP=3;HapScore=1;MGOF=7;MMLQ=24;MQ=60.0;NF=24;NR=36;PP=1873;QD=32.1077979144;SC=ATGCTGGCCCATTCTTTGAGA;SbPval=0.19;Source=Platypus;TC=201;TCF=63;TCR=138;TR=60;WE=49207265;WS=49207245;set=Platypus	GT:AD:AF:DP	0/1:141,60:0.30:201
chr19	49207257	rs603985	T	C	2794.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.568;ClippingRankSum=0.000;DB;DP=254;ExcessHet=3.0103;FS=8.246;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.18;ReadPosRankSum=-1.170;SOR=0.347;set=HC	GT:AD:AF:DP	0/1:169,81:0.32:250
chr19	49216926	rs281384	A	G	6424.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr19	49217261	rs281385	A	G	2364.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr19	49217305	rs281386	A	G	715.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:14,29:0.67:43
chr19	49217520	rs281387	T	C	2092.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr19	49217605	rs281388	T	G	4437.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr19	49218060	rs35866622	C	T	412.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:32,22:0.41:54
chr19	49218111	rs33988101	G	T	611.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.063;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=13.498;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.58;ReadPosRankSum=1.502;SOR=0.153;set=HC	GT:AD:AF:DP	0/1:56,37:0.40:93
chr19	49218430	rs12978750	A	G	349.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.408;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.93;ReadPosRankSum=-1.272;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:21,11:0.34:32
chr19	49218437	rs12978752	A	C	295.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.430;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.04;ReadPosRankSum=1.024;SOR=0.798;set=HC	GT:AD:AF:DP	0/1:32,10:0.24:42
chr19	49218602	rs12979278	C	T	1443.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:94,71:0.43:165
chr19	49228059	rs34354498	C	T	5809.77	.	AC=1;AF=0.500;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	0/1:161,269:0.63:430
chr19	49228272	rs2287921	T	C	677.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:71,34:0.32:105
chr19	49232226	rs2287922	G	A	470.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:80,28:0.26:108
chr19	49232966	rs12973151	C	T	203.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.892;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=1.790;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.08;ReadPosRankSum=-3.046;SOR=1.339;set=HC	GT:AD:AF:DP	0/1:37,13:0.26:50
chr19	49244219	rs2307018	CG	AA	3008.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;JOINED;set=Intersection	GT:AD:AF:DP	0/1:58,77:0.57:135
chr19	49246866	rs838147	A	G	1737.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:35,73:0.68:108
chr19	49247601	rs11672046	C	T	1355.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:33,57:0.63:90
chr19	49247693	rs8108136	C	T	1673.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:48,77:0.62:125
chr19	49247786	rs8108468	G	A	2820.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:67,127:0.65:194
chr19	49247900	rs8111288	G	A	1177.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:22,53:0.71:75
chr19	49248640	rs12982115	A	G	1919.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:48,80:0.62:128
chr19	49248730	rs838145	G	A	1695.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:28,65:0.70:93
chr19	49254573	rs838137	T	A	1542.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:28,69:0.71:97
chr19	49259529	rs838133	A	G	3543.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr19	49261368	rs739320	T	C	12125.77	.	AC=2;AF=1.00;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	1/1:0,453:1.00:453
chr19	49299533	rs557106	A	G	2158.77	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:217,123:0.36:340
chr19	49300605	rs526744	T	C	655.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.391;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.72;ReadPosRankSum=0.181;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:102,37:0.27:139
chr19	49318224	rs45580433	T	C	1125.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:14,40:0.74:54
chr19	49336014	.	GT	G	848.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.663;ClippingRankSum=0.000;DP=184;ExcessHet=3.0103;FS=0.678;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.944;QD=5.94;ReadPosRankSum=0.269;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:75,68:0.48:143
chr19	49376584	rs3786734	G	A	1899.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:194,108:0.36:302
chr19	49378180	.	AT	A	323.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.551;ClippingRankSum=0.000;DP=277;ExcessHet=3.0103;FS=2.492;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=2.760;QD=1.62;ReadPosRankSum=-1.023;SOR=0.471;set=HC	GT:AD:AF:DP	0/1:142,58:0.29:200
chr19	49385231	rs1005061	G	A	1339.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:33,55:0.62:88
chr19	49388654	rs3826818	C	A	5428.77	.	AC=1;AF=0.500;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	0/1:150,254:0.63:404
chr19	49391585	rs8112951	A	G	945.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:38,41:0.52:79
chr19	49398405	rs34378208	C	T	1701.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:37,77:0.68:114
chr19	49401204	rs199995175	C	CTTTA	1251.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:27,33:0.55:60
chr19	49401205	.	CT	TT	1801	.	AC=1;AF=0.500;AN=2;BRF=0.36;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=3;MMLQ=21;MQ=60.0;NF=1,18;NR=30,45;PP=619,1801;QD=20.1935483871;SC=AATCTTTAGCCTTATTTATTT;SbPval=0.76;Source=Platypus;TC=65;TCF=3;TCR=62;TR=31,63;WE=49401213;WS=49401194;set=Platypus	GT:AD:AF:DP	0/1:29,63:0.68:92
chr19	49401205	.	CT	CTTATTTATT	1801	.	AC=1;AF=0.500;AN=2;BRF=0.36;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=3;MMLQ=21;MQ=60.0;NF=1,18;NR=30,45;PP=619,1801;QD=20.1935483871;SC=AATCTTTAGCCTTATTTATTT;SbPval=0.76;Source=Platypus;TC=65;TCF=3;TCR=62;TR=31,63;WE=49401213;WS=49401194;set=Platypus	GT:AD:AF:DP	0/1:34,31:0.48:65
chr19	49401205	rs17847559	C	T,CTTATTTAT	2972.73	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=34.17;SOR=1.749;set=HC	GT:AD:AF:DP	1/2:0,74,13:0.85,0.15:87
chr19	49404367	rs141391051	CCTGACT	C	4687.73	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:77,118:0.61:195
chr19	49416936	rs746075	C	T	1257.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr19	49421829	rs2287834	A	G	1279.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:87,61:0.41:148
chr19	49421903	rs2287835	A	G	5297.77	.	AC=1;AF=0.500;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	0/1:123,248:0.67:371
chr19	49421966	rs2287836	T	C	2777.77	.	AC=1;AF=0.500;AN=2;DB;DP=514;set=Intersection	GT:AD:AF:DP	0/1:355,157:0.31:512
chr19	49424354	rs12979307	C	T	453.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.410;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.88;ReadPosRankSum=-0.277;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:84,33:0.28:117
chr19	49424381	rs12979328	C	A	704.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:112,45:0.29:157
chr19	49424925	rs11671777	C	T	451.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:60,24:0.29:84
chr19	49425772	rs1532704	T	C	1854.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr19	49442849	rs3830420	T	TG	690.73	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:105,46:0.30:151
chr19	49442933	rs2270939	T	C	531.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.658;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=3.497;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.74;ReadPosRankSum=0.030;SOR=0.943;set=HC	GT:AD:AF:DP	0/1:105,37:0.26:142
chr19	49445679	rs11669022	C	T	794.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:90,46:0.34:136
chr19	49445817	rs11666105	T	C	1547.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:197,86:0.30:283
chr19	49447748	rs3835153	GGA	G	4270.73	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:198,117:0.37:315
chr19	49458262	rs4645881	C	T	1200.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.10;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr19	49459104	rs1805419	A	G	1342.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:36,59:0.62:95
chr19	49464507	rs371491785	CT	C	50.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.978;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.85;ReadPosRankSum=-1.262;SOR=0.511;set=HC	GT:AD:AF:DP	0/1:45,15:0.25:60
chr19	49464971	rs704243	G	A	1146.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.06;SOR=1.105;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr19	49469087	rs2230267	T	C	5303.77	.	AC=1;AF=0.500;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	0/1:139,220:0.61:359
chr19	49474027	rs2270938	A	T	985.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:19,46:0.71:65
chr19	49485548	rs5464	G	A	1323.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:55,63:0.53:118
chr19	49485758	rs2270937	C	T	870.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:14,36:0.72:50
chr19	49529379	rs7255292	T	C	1117.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;MQ=59.05;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr19	49605530	rs10419811	A	G	1316.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:34,73:0.68:107
chr19	49619483	rs149621213	A	C	164.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:31,9:0.23:40
chr19	49641534	rs45503497	C	A	4103.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:86,183:0.68:269
chr19	49646334	rs138280922	C	T	973.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.431;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=1.480;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.98;ReadPosRankSum=-0.554;SOR=0.844;set=HC	GT:AD:AF:DP	0/1:71,51:0.42:122
chr19	49657710	rs66501117	ACAT	A	3003.73	.	AC=1;AF=0.500;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	0/1:182,96:0.35:278
chr19	49657889	rs147238387	T	TTCC	1954.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.418;ClippingRankSum=0.000;DB;DP=270;ExcessHet=3.0103;FS=9.047;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.29;ReadPosRankSum=-1.720;SOR=0.803;set=HC	GT:AD:AF:DP	0/1:126,64:0.34:190
chr19	49658209	rs3745297	A	C	2924.77	.	AC=1;AF=0.500;AN=2;DB;DP=528;set=Intersection	GT:AD:AF:DP	0/1:350,167:0.32:517
chr19	49658367	rs3745298	C	T	2293.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.882;ClippingRankSum=0.000;DB;DP=430;ExcessHet=3.0103;FS=0.561;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.40;ReadPosRankSum=-0.427;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:291,134:0.32:425
chr19	49658390	rs3745299	T	C	1975.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.233;ClippingRankSum=0.000;DB;DP=370;ExcessHet=3.0103;FS=3.025;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.38;ReadPosRankSum=2.117;SOR=0.546;set=HC	GT:AD:AF:DP	0/1:253,114:0.31:367
chr19	49661112	rs3760663	G	A	176.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:24,12:0.33:36
chr19	49661582	rs3760664	T	C	1520.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.174;ClippingRankSum=0.000;DB;DP=313;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.02;ReadPosRankSum=-0.964;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:217,86:0.28:303
chr19	49671151	.	G	A	1136	.	AC=1;AF=0.500;AN=2;BRF=0.51;FR=0.5000;HP=4;HapScore=1;MGOF=7;MMLQ=22;MQ=59.94;NF=46;NR=39;PP=1136;QD=13.7737789711;SC=CTCCCTGTGTGCCCCGCTCCC;SbPval=0.5;Source=Platypus;TC=264;TCF=146;TCR=118;TR=85;WE=49671159;WS=49671141;set=Platypus	GT:AD:AF:DP	1/0:179,85:0.32:264
chr19	49671442	rs35449031	A	AGT	853.73	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:58,30:0.34:88
chr19	49674495	rs1477363	C	A	1050.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:130,61:0.32:191
chr19	49685708	rs371907605	CCCATCCATCCATCCAT	C,CCCATCCATCCAT	6822.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=224;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.43;QD=37.90;SOR=1.468;set=HC	GT:AD:AF:DP	1/2:0,68,112:0.38,0.62:180
chr19	49691822	rs909010	T	C	1789.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:223,103:0.32:326
chr19	49692373	rs1175791	C	G	1231.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:138,62:0.31:200
chr19	49700205	rs66528168	A	G	149.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:26,10:0.28:36
chr19	49703401	rs1175806	T	C	822.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:60,39:0.39:99
chr19	49703764	rs10403114	A	G	468.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.565;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=13.084;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-1.846;QD=3.28;ReadPosRankSum=-0.830;SOR=2.020;set=HC	GT:AD:AF:DP	0/1:111,32:0.22:143
chr19	49705116	rs11353757	CA	C	276.73	.	AC=1;AF=0.500;AN=2;DB;DP=82;MQ=60.13;set=Intersection	GT:AD:AF:DP	0/1:59,19:0.24:78
chr19	49797887	rs3214611	TA	T	307.27	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:2,16:0.89:18
chr19	49838891	rs354020	C	A	21587.77	.	AC=2;AF=1.00;AN=2;DB;DP=823;set=Intersection	GT:AD:AF:DP	1/1:0,807:1.00:807
chr19	49839015	rs354021	T	C	13742.77	.	AC=2;AF=1.00;AN=2;DB;DP=527;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.63;SOR=0.725;set=HC	GT:AD:AF:DP	1/1:0,516:1.00:516
chr19	49841054	rs354026	G	T	5208.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr19	49899076	rs10405154	G	A	1682.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr19	49900836	rs78318811	C	T	6261.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr19	49900877	rs9304688	A	G	5118.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr19	49901125	rs12977735	C	T	2058.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr19	49901318	rs10421748	T	C	5042.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr19	49901484	rs12980364	T	C	460.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr19	49902990	rs9807898	A	C	1099.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr19	49903008	rs8110789	G	C	848.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr19	49925667	rs12974629	T	G	6689.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr19	49926530	.	CCAG	C	236.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.507;ClippingRankSum=0.000;DP=342;ExcessHet=3.0103;FS=3.900;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.85;ReadPosRankSum=-0.391;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:251,26:0.09:277
chr19	49930721	rs4802605	T	C	3169.77	.	AC=1;AF=0.500;AN=2;DB;DP=493;set=Intersection	GT:AD:AF:DP	0/1:322,168:0.34:490
chr19	49930786	rs4801798	C	A	2085.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:194,112:0.37:306
chr19	49935927	rs5828394	A	AG	3745.73	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr19	49939719	rs2946848	T	C	1315.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:23,52:0.69:75
chr19	49940131	rs3826718	G	C	3045.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr19	49944730	rs58045148	CA	C	2590.73	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr19	49949652	rs7462	G	A	1348.77	.	AC=1;AF=0.500;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	0/1:231,86:0.27:317
chr19	49950298	rs13394	C	T	3108.77	.	AC=1;AF=0.500;AN=2;DB;DP=493;set=Intersection	GT:AD:AF:DP	0/1:316,167:0.35:483
chr19	49950356	rs12443	C	G	1754.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:141,85:0.38:226
chr19	49950413	rs2335090	C	G	736.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:71,35:0.33:106
chr19	49953051	.	CTTTTTT	C	381.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.165;ClippingRankSum=0.000;DP=27;ExcessHet=3.0103;FS=2.282;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.09;ReadPosRankSum=1.373;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:9,11:0.55:20
chr19	49954356	rs6509432	G	A	148.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:9,8:0.47:17
chr19	49954803	rs2293013	C	T	3913.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.955;ClippingRankSum=0.000;DB;DP=400;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.14;ReadPosRankSum=1.021;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:272,114:0.30:386
chr19	49954807	rs2293012	T	G	3967.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.578;ClippingRankSum=0.000;DB;DP=403;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.20;ReadPosRankSum=1.390;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:274,115:0.30:389
chr19	49955016	rs2293011	G	T	811.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:78,41:0.34:119
chr19	49962892	rs62128062	G	A	361.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:24,18:0.43:42
chr19	49963971	rs35639941	A	AT	114.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.694;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=1.131;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.77;ReadPosRankSum=-0.308;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:48,17:0.26:65
chr19	49963987	rs11668181	C	T	196.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.574;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=10.720;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.59;ReadPosRankSum=-0.074;SOR=1.671;set=HC	GT:AD:AF:DP	0/1:53,23:0.30:76
chr19	49964833	.	T	C	280	.	AC=1;AF=0.500;AN=2;BRF=0.25;FR=0.5000;HP=3;HapScore=1;MGOF=27;MMLQ=24;MQ=58.86;NF=14;NR=6;PP=280;QD=15.7385606274;SC=GAGGAGGGGCTGGGCCTGGAC;SbPval=0.74;Source=Platypus;TC=74;TCF=48;TCR=26;TR=20;WE=49964841;WS=49964823;set=Platypus	GT:AD:AF:DP	1/0:54,20:0.27:74
chr19	49964833	.	T	TGGGCCTGGACTCCTGGGTCTGAGGGAGGAGGGGCC	524.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.219;ClippingRankSum=0.000;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.82;MQRankSum=-2.310;QD=8.89;ReadPosRankSum=-4.451;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:50,9:0.15:59
chr19	49964977	rs1320303	C	G	1436.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:184,86:0.32:270
chr19	49965688	rs117605916	G	A	268.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:5,13:0.72:18
chr19	49967808	rs34601909	C	T	2443.77	.	AC=1;AF=0.500;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	0/1:206,129:0.39:335
chr19	49967981	rs11558188	T	G	2181.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:205,113:0.36:318
chr19	49969085	rs10853810	C	T	1802.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:221,107:0.33:328
chr19	49969310	rs2914668	A	G	219.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:19,11:0.37:30
chr19	49995254	rs701717	A	G	1020.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:33,40:0.55:73
chr19	50028306	rs71724821	CCTGCTG	C	2776.73	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:86,73:0.46:159
chr19	50059718	rs6509437	G	A	8435.77	.	AC=1;AF=0.500;AN=2;DB;DP=555;set=Intersection	GT:AD:AF:DP	0/1:181,365:0.67:546
chr19	50062280	rs79151664	C	T	701.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.264;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=1.481;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.32;ReadPosRankSum=-1.406;SOR=0.528;set=HC	GT:AD:AF:DP	0/1:88,44:0.33:132
chr19	50063770	rs138827072	C	CG	2035.73	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:41,75:0.65:116
chr19	50091952	rs117925157	C	T	772.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:17,33:0.66:50
chr19	50092002	rs2288921	T	G	413.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:4,17:0.81:21
chr19	50093217	.	T	TCCACCC	3321.73	.	AC=1;AF=0.500;AN=2;DP=219;set=Intersection	GT:AD:AF:DP	0/1:62,85:0.58:147
chr19	50093431	.	T	TGCGGGG	980.73	.	AC=1;AF=0.500;AN=2;DP=65;set=Intersection	GT:AD:AF:DP	0/1:34,26:0.43:60
chr19	50093454	rs4429389	A	T	3236.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:1,96:0.99:97
chr19	50093572	rs7249925	A	G	7730.77	.	AC=1;AF=0.500;AN=2;DB;DP=554;set=Intersection	GT:AD:AF:DP	0/1:199,343:0.63:542
chr19	50095047	rs146415405	AGCCGG	A	2865.73	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:28,72:0.72:100
chr19	50096421	rs10404887	C	G	584.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:17,27:0.61:44
chr19	50097547	rs7251877	A	G	1763.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.141;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=1.029;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.12;ReadPosRankSum=2.204;SOR=0.897;set=HC	GT:AD:AF:DP	0/1:25,78:0.76:103
chr19	50097784	rs10414643	T	C	7022.77	.	AC=1;AF=0.500;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	0/1:149,280:0.65:429
chr19	50097932	rs16981329	G	C	10315.77	.	AC=1;AF=0.500;AN=2;DB;DP=655;set=Intersection	GT:AD:AF:DP	0/1:203,444:0.69:647
chr19	50100295	rs3745475	A	G	3847.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:84,169:0.67:253
chr19	50100484	rs77535345	G	A	6919.77	.	AC=1;AF=0.500;AN=2;DB;DP=455;set=Intersection	GT:AD:AF:DP	0/1:154,291:0.65:445
chr19	50100874	rs111581233	G	A	5536.77	.	AC=1;AF=0.500;AN=2;DB;DP=1009;set=Intersection	GT:AD:AF:DP	0/1:678,323:0.32:1001
chr19	50101353	.	C	CA	346	.	AC=1;AF=0.500;AN=2;BRF=0.11;FR=0.5000;HP=2;HapScore=2;MGOF=34;MMLQ=24;MQ=60.0;NF=1;NR=10;PP=346;QD=34.6363636364;SC=TTTTTTGAGACAGAGTCTCGC;SbPval=0.58;Source=Platypus;TC=13;TCF=1;TCR=12;TR=11;WE=50101361;WS=50101343;set=Platypus	GT:AD:AF:DP	1/0:2,11:0.85:13
chr19	50103252	rs2116922	G	A	4693.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:111,198:0.64:309
chr19	50104948	rs142810131	C	A	927.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:31,44:0.59:75
chr19	50105239	rs6509439	C	T	210.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:3,10:0.77:13
chr19	50123559	rs60074767	G	A	6896.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:5,264:0.98:269
chr19	50123590	rs75743949	C	T	7081.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:5,270:0.98:275
chr19	50123761	rs60006649	G	T	1863.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr19	50124798	rs60445174	C	T	5315.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:4,197:0.98:201
chr19	50124927	rs59642327	G	A	2282.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:2,83:0.98:85
chr19	50128071	rs57119643	GC	TT	1779.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr19	50128522	rs7257224	T	C	8273.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr19	50128543	rs7256146	A	G	6744.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr19	50128905	rs75849027	C	T	3455.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr19	50139119	rs731861	G	C	399.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.04;SOR=1.230;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr19	50154904	rs7251334	A	C	1431.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr19	50156896	rs10401743	T	C	3600.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr19	50182697	rs8109314	T	C	331.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr19	50183980	rs1433102	TT	CC	2536.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr19	50187111	rs3816047	C	G	2220.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr19	50195770	rs10423579	TT	CG	3403.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr19	50210612	rs113185396	G	A	1033.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:80,46:0.37:126
chr19	50216118	rs56405217	T	TG	12088.73	.	AC=2;AF=1.00;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	1/1:0,357:1.00:357
chr19	50250872	rs8109529	G	A	2068.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr19	50265549	rs3745477	T	G	2327.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr19	50304336	rs1003424	A	G	902.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.040;ClippingRankSum=0.000;DB;DP=234;ExcessHet=3.0103;FS=1.840;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.87;ReadPosRankSum=-0.220;SOR=0.561;set=HC	GT:AD:AF:DP	0/1:172,61:0.26:233
chr19	50304392	rs10421561	T	C	530.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:86,30:0.26:116
chr19	50304439	rs10421754	T	C	436.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:56,21:0.27:77
chr19	50305688	rs2159984	G	C	2986.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.748;ClippingRankSum=0.000;DB;DP=598;ExcessHet=3.0103;FS=1.209;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.07;ReadPosRankSum=-0.639;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:409,180:0.31:589
chr19	50308893	rs8101959	T	C	1849.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:175,100:0.36:275
chr19	50314458	rs55810357	GA	G	352.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.114;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.985;MLEAC=1;MLEAF=0.500;MQ=60.36;MQRankSum=2.256;QD=4.05;ReadPosRankSum=1.533;SOR=0.926;set=HC	GT:AD:AF:DP	0/1:54,33:0.38:87
chr19	50314738	rs12973635	A	C	1821.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:189,94:0.33:283
chr19	50315423	rs8104825	G	A	224.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:26,12:0.32:38
chr19	50315698	rs2305919	A	C	1171.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:91,56:0.38:147
chr19	50315773	rs2305918	T	A	1362.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:139,72:0.34:211
chr19	50316083	rs35816883	C	T	2242.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:180,106:0.37:286
chr19	50322611	.	T	TGATGGCTTGGGTGGTTGGGGTCCCTGTAAGGGGCCGTGCATGAGG	5085.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.038;ClippingRankSum=0.000;DP=256;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=0.781;QD=24.93;ReadPosRankSum=-1.048;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:76,128:0.63:204
chr19	50322619	.	TG	T	2963	.	AC=1;AF=0.500;AN=2;BRF=0.48;FR=0.5000;HP=4;HapScore=4;MGOF=14;MMLQ=28;MQ=60.0;NF=2;NR=65;PP=2963;QD=20;SC=AGTGATGGCTTGGGGTGGTTG;SbPval=0.84;Source=Platypus;TC=137;TCF=7;TCR=130;TR=67;WE=50322665;WS=50322595;set=Platypus	GT:AD:AF:DP	0/1:70,67:0.49:137
chr19	50331678	rs5828413	CT	C	2547.73	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:33,75:0.69:108
chr19	50333318	rs112946131	G	C	7104.77	.	AC=1;AF=0.500;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	0/1:149,326:0.69:475
chr19	50335510	rs3745480	T	C	1951.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:30,80:0.73:110
chr19	50354211	rs7260222	C	T	3809.77	.	AC=1;AF=0.500;AN=2;DB;DP=614;set=Intersection	GT:AD:AF:DP	0/1:399,212:0.35:611
chr19	50358133	rs75478119	T	G	1670.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:107,81:0.43:188
chr19	50358170	rs1290657	T	C	2364.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:95,106:0.53:201
chr19	50358183	rs2278836	C	A	2013.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:122,110:0.47:232
chr19	50363175	rs1290646	A	G	976.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:99,50:0.34:149
chr19	50365227	.	G	A	2083.77	.	AC=1;AF=0.500;AN=2;DP=136;set=Intersection	GT:AD:AF:DP	0/1:44,89:0.67:133
chr19	50368361	rs1290649	T	A	1240.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:81,60:0.43:141
chr19	50375035	rs2290774	T	C	1639.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:201,92:0.31:293
chr19	50375242	rs2290775	C	T	351.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:50,19:0.28:69
chr19	50380858	rs731826	T	G	123.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:28,10:0.26:38
chr19	50383591	rs8109661	A	G	11348.77	.	AC=2;AF=1.00;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	1/1:0,423:1.00:423
chr19	50383636	rs3745486	T	C	1660.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:190,93:0.33:283
chr19	50386340	rs746738	T	C	1854.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:203,103:0.34:306
chr19	50399384	rs3840921	G	GC	1019.73	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:78,43:0.36:121
chr19	50404939	rs1290754	T	G	10150.77	.	AC=2;AF=1.00;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	1/1:0,372:1.00:372
chr19	50411742	rs892028	A	G	17263.77	.	AC=2;AF=1.00;AN=2;DB;DP=662;set=Intersection	GT:AD:AF:DP	1/1:0,654:1.00:654
chr19	50412417	rs999583	G	A	720.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:82,37:0.31:119
chr19	50435747	rs283525	T	C	4435.77	.	AC=1;AF=0.500;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	0/1:134,197:0.60:331
chr19	50496281	rs113770287	G	GAC	1483.73	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:18,38:0.68:56
chr19	50657786	rs66651303	AG	A	15690.73	.	AC=2;AF=1.00;AN=2;DB;DP=475;set=Intersection	GT:AD:AF:DP	1/1:0,463:1.00:463
chr19	50662726	rs3745499	G	C	407.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.121;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=1.794;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.85;ReadPosRankSum=1.059;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:78,28:0.26:106
chr19	50713713	rs590722	C	A	3533.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:73,158:0.68:231
chr19	50720793	rs55934167	C	T	2529.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.668;ClippingRankSum=0.000;DB;DP=345;ExcessHet=3.0103;FS=2.587;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.53;ReadPosRankSum=-0.597;SOR=0.549;set=HC	GT:AD:AF:DP	0/1:208,128:0.38:336
chr19	50720793	.	CGG	TGA	1358	.	AC=1;AF=0.500;AN=2;BRF=0.44;FR=0.5000;HP=2;HapScore=1;MGOF=1;MMLQ=28;MQ=60.0;NF=69;NR=33;PP=1358;QD=13.8379203418;SC=GTGCAGTGCACGGCCTGCTCA;SbPval=0.35;Source=Platypus;TC=267;TCF=189;TCR=78;TR=102;WE=50720803;WS=50720783;set=Platypus	GT:AD:AF:DP	0/1:165,102:0.38:267
chr19	50720795	rs10412634	G	A	12058.77	.	AC=2;AF=1.00;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	1/1:1,355:1.00:356
chr19	50721074	rs4802666	G	A	691.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:62,33:0.35:95
chr19	50726319	rs12609315	C	G	3220.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:104,138:0.57:242
chr19	50726459	rs654877	T	C	14743.77	.	AC=2;AF=1.00;AN=2;DB;DP=571;set=Intersection	GT:AD:AF:DP	1/1:2,562:1.00:564
chr19	50726570	rs4801822	G	A	10132.77	.	AC=2;AF=1.00;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	1/1:2,379:0.99:381
chr19	50727312	rs7258667	C	T	3014.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:44,136:0.76:180
chr19	50727510	rs56354891	T	C	1408.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:194,81:0.29:275
chr19	50728148	rs61389250	G	A	1455.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:26,57:0.69:83
chr19	50728955	rs12983888	G	A	3343.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:76,155:0.67:231
chr19	50730047	rs71180683	TG	T	1803.73	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:50,73:0.59:123
chr19	50735024	rs34062561	C	T	2396.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:40,98:0.71:138
chr19	50735340	rs11666328	C	T	2042.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:191,116:0.38:307
chr19	50747428	rs600730	G	A	1308.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:133,69:0.34:202
chr19	50750208	rs144215696	C	T	1146.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:25,47:0.65:72
chr19	50750419	rs607227	C	T	8941.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:0,332:1.00:332
chr19	50760716	rs378811	C	G	3915.77	.	AC=1;AF=0.500;AN=2;DB;DP=761;set=Intersection	GT:AD:AF:DP	0/1:524,231:0.31:755
chr19	50760829	rs73068986	T	C	1586.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:172,78:0.31:250
chr19	50762418	rs1651553	A	G	6877.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:2,261:0.99:263
chr19	50763886	rs28482851	C	T	3629.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.677;ClippingRankSum=0.000;DB;DP=774;ExcessHet=3.0103;FS=1.199;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=-1.649;QD=4.80;ReadPosRankSum=2.604;SOR=0.847;set=HC	GT:AD:AF:DP	0/1:521,235:0.31:756
chr19	50763889	rs12981413	C	T	11687.77	.	AC=1;AF=0.500;AN=2;DB;DP=784;MQ=60.08;set=Intersection	GT:AD:AF:DP	0/1:245,524:0.68:769
chr19	50764005	rs149039486	C	CGT	1386.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.499;ClippingRankSum=0.000;DB;DP=378;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=-1.421;QD=4.72;ReadPosRankSum=-0.631;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:210,84:0.29:294
chr19	50764017	rs146099002	T	TGC	4049.73	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:104,191:0.65:295
chr19	50764079	rs140241247	A	AGT	3813.73	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr19	50766403	rs1968381	C	T	157.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:12,8:0.40:20
chr19	50766707	rs1529492	T	C	2609.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr19	50771609	rs3745504	G	A	3712.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:47,162:0.78:209
chr19	50771635	rs930086	T	C	5622.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr19	50775742	rs1651543	A	G	1095.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr19	50779500	rs708133	A	G	161.28	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:1,7:0.88:8
chr19	50779897	rs77206276	TA	T	363.73	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:14,13:0.48:27
chr19	50779988	rs788337	A	T	1522.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.149;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=2.379;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.38;ReadPosRankSum=-1.129;SOR=0.927;set=HC	GT:AD:AF:DP	0/1:47,76:0.62:123
chr19	50781598	rs1077990	G	C	349.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:8,14:0.64:22
chr19	50789967	rs10406788	G	A	604.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:16,24:0.60:40
chr19	50796352	rs651044	C	A	6338.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr19	50796905	rs3745509	G	A	423.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:66,26:0.28:92
chr19	50796960	rs3745510	C	T	924.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:75,49:0.40:124
chr19	50797131	rs4801826	A	G	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.206;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.12;ReadPosRankSum=0.082;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:12,3:0.20:15
chr19	50805138	rs3826772	C	T	4206.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr19	50812221	rs889002	A	G	83.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.743;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.33;ReadPosRankSum=0.578;SOR=0.321;set=HC	GT:AD:AF:DP	0/1:28,8:0.22:36
chr19	50813169	rs12978083	A	C	5638.77	.	AC=1;AF=0.500;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	0/1:159,255:0.62:414
chr19	50813263	rs627491	T	G	2993.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr19	50832152	rs375912738	T	C	792.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.57;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr19	50837859	rs56849250	C	CA	620.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.80;MQRankSum=0.775;QD=23.87;ReadPosRankSum=0.603;SOR=0.487;set=HC	GT:AD:AF:DP	0/1:5,21:0.81:26
chr19	50863023	rs638294	A	G	1183.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;MQ=59.93;set=Intersection	GT:AD:AF:DP	0/1:160,66:0.29:226
chr19	50865535	rs676314	A	G	1328.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;MQ=59.98;set=Intersection	GT:AD:AF:DP	0/1:212,84:0.28:296
chr19	50868754	rs1274517	A	G	259.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:40,17:0.30:57
chr19	50880741	rs2695121	T	C	1030.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:79,47:0.37:126
chr19	50881326	rs28514894	T	C	126.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:33,9:0.21:42
chr19	50881822	rs34296657	A	ACAG	2464.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.345;ClippingRankSum=0.000;DB;DP=227;ExcessHet=3.0103;FS=2.613;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.91;ReadPosRankSum=0.341;SOR=0.505;set=HC	GT:AD:AF:DP	0/1:138,69:0.33:207
chr19	50882169	rs2248949	A	G	1366.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.209;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=5.713;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.95;ReadPosRankSum=-2.176;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:128,44:0.26:172
chr19	50882172	rs41432149	C	T	1319.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.429;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=3.508;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.90;ReadPosRankSum=-1.701;SOR=1.027;set=HC	GT:AD:AF:DP	0/1:127,40:0.24:167
chr19	50882918	rs2303045	G	C	575.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.278;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.26;ReadPosRankSum=-1.744;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:66,26:0.28:92
chr19	50909389	rs1673041	T	G	4128.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:1,148:0.99:149
chr19	50919797	rs3218776	C	T	4263.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr19	50922370	rs2244095	A	G	733.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr19	50926264	rs1673030	TG	CC	4054.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.07;SOR=2.059;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr19	50926742	rs3745516	A	G	2312.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr19	50927059	rs76521311	G	T	695.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:21,31:0.60:52
chr19	50939844	rs117858598	G	A	424.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.002;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=4.560;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.05;ReadPosRankSum=2.082;SOR=1.324;set=HC	GT:AD:AF:DP	0/1:78,27:0.26:105
chr19	50965272	rs25668	T	C	2507.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:75,117:0.61:192
chr19	50969325	rs1274604	A	G	710.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:10,27:0.73:37
chr19	50982086	rs921938	C	A	694.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:16,27:0.63:43
chr19	50983930	rs10409679	C	T	3147.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:72,139:0.66:211
chr19	50986074	rs14031	G	A	2323.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:30,87:0.74:117
chr19	51015404	rs12977172	T	C	1906.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:41,76:0.65:117
chr19	51015574	rs12976250	G	C	9683.77	.	AC=1;AF=0.500;AN=2;DB;DP=602;set=Intersection	GT:AD:AF:DP	0/1:170,420:0.71:590
chr19	51015869	rs2305761	G	A	3663.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:68,149:0.69:217
chr19	51017835	rs889131	G	A	8725.77	.	AC=1;AF=0.500;AN=2;DB;DP=566;set=Intersection	GT:AD:AF:DP	0/1:168,386:0.70:554
chr19	51020903	rs61751956	A	G	2334.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:94,112:0.54:206
chr19	51021057	rs61751957	A	G	1652.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:28,71:0.72:99
chr19	51052189	rs11880112	T	C	354.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:6,16:0.73:22
chr19	51128661	rs16986142	T	C	10189.77	.	AC=2;AF=1.00;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	1/1:0,367:1.00:367
chr19	51128856	rs10426057	A	C	4849.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr19	51132979	.	G	A	371	.	AC=1;AF=0.500;AN=2;BRF=0.4;FR=0.5000;HP=3;HapScore=2;MGOF=25;MMLQ=27;MQ=56.11;NF=18;NR=7;PP=371;QD=16.2308485019;SC=CCTCAGACCCGGGAGTCCAGA;SbPval=0.89;Source=Platypus;TC=64;TCF=38;TCR=26;TR=25;WE=51132987;WS=51132969;set=Platypus	GT:AD:AF:DP	1/0:39,25:0.39:64
chr19	51133356	rs10407511	C	G	1408.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:156,74:0.32:230
chr19	51140654	rs3815749	G	A	2971.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:76,137:0.64:213
chr19	51140689	rs2287820	T	C	3116.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:82,148:0.64:230
chr19	51140752	rs2287819	T	C	1783.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:45,82:0.65:127
chr19	51159571	rs4801844	T	G	10727.77	.	AC=2;AF=1.00;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	1/1:0,383:1.00:383
chr19	51161088	rs10404821	C	A	349.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:21,17:0.45:38
chr19	51170706	rs3745521	A	G	2957.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:2,103:0.98:105
chr19	51171188	rs750578	G	A	1046.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:32,46:0.59:78
chr19	51191003	rs11878464	A	G	497.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:18,22:0.55:40
chr19	51191022	rs187329410	C	G	691.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:20,25:0.56:45
chr19	51191172	rs12975345	A	G	3968.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:117,186:0.61:303
chr19	51227977	rs114190815	T	C	943.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr19	51228802	rs1053020	T	G	9860.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	1/1:1,374:1.00:375
chr19	51261829	rs73046516	G	A	3678.77	.	AC=1;AF=0.500;AN=2;DB;DP=583;set=Intersection	GT:AD:AF:DP	0/1:380,197:0.34:577
chr19	51261951	rs11880363	G	T	2316.77	.	AC=1;AF=0.500;AN=2;DB;DP=527;set=Intersection	GT:AD:AF:DP	0/1:382,142:0.27:524
chr19	51262056	rs11883166	T	C	1070.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:109,57:0.34:166
chr19	51262620	rs10424138	A	C	5372.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr19	51262668	rs12983009	C	T	1174.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:48,51:0.52:99
chr19	51294003	rs1978605	T	G	546.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.087;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.63;ReadPosRankSum=0.168;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:21,26:0.55:47
chr19	51294854	rs117288213	C	T	2759.77	.	AC=1;AF=0.500;AN=2;DB;DP=519;set=Intersection	GT:AD:AF:DP	0/1:349,165:0.32:514
chr19	51297825	rs55716643	GC	AA	9109.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;JOINED;set=Intersection	GT:AD:AF:DP	0/1:105,226:0.68:331
chr19	51297944	rs266123	A	G	3433.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:63,144:0.70:207
chr19	51301395	rs4801853	C	T	3289.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:78,138:0.64:216
chr19	51301456	rs4802741	G	A	5504.77	.	AC=1;AF=0.500;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	0/1:156,247:0.61:403
chr19	51302154	rs1043315	G	A	1388.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:35,60:0.63:95
chr19	51302202	rs3745526	T	A	3260.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:72,142:0.66:214
chr19	51302473	rs3833237	T	TAAG	4497.73	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:75,114:0.60:189
chr19	51302632	rs58572527	CAG	C	2342.73	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:32,61:0.66:93
chr19	51305784	rs2560931	C	T	853.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:28,39:0.58:67
chr19	51321813	rs2411334	A	G	15129.77	.	AC=2;AF=1.00;AN=2;DB;DP=556;set=Intersection	GT:AD:AF:DP	1/1:0,555:1.00:555
chr19	51321919	rs3212841	C	CCAGCCTTCGCAGGCCACACCCTGAAGCCACTCTCCACCCGCT	5283.73	.	AC=2;AF=1.00;AN=2;DB;DP=173;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.13;QD=44.03;SOR=5.602;set=HC	GT:AD:AF:DP	1/1:0,120:1.00:120
chr19	51321961	rs3212840	G	A	54.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:14,4:0.22:18
chr19	51322312	rs5519	T	C	1425.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:21,55:0.72:76
chr19	51323232	rs5517	T	C	7013.77	.	AC=1;AF=0.500;AN=2;DB;DP=482;set=Intersection	GT:AD:AF:DP	0/1:154,311:0.67:465
chr19	51323473	rs5516	C	G	15933.77	.	AC=2;AF=1.00;AN=2;DB;DP=582;set=Intersection	GT:AD:AF:DP	1/1:0,571:1.00:571
chr19	51323501	rs1054713	A	G	13284.77	.	AC=2;AF=1.00;AN=2;DB;DP=495;set=Intersection	GT:AD:AF:DP	1/1:0,488:1.00:488
chr19	51323881	rs2659103	T	G	263.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.38;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr19	51327163	rs35641597	GC	G	674.27	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.888;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.08;ReadPosRankSum=0.533;SOR=1.121;set=HC	GT:AD:AF:DP	0/1:3,25:0.89:28
chr19	51327172	rs56125748	C	G	109.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.055;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.92;ReadPosRankSum=-0.249;SOR=0.243;set=HC	GT:AD:AF:DP	0/1:21,7:0.25:28
chr19	51330423	rs61752560	C	G	792.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:105,47:0.31:152
chr19	51330932	rs3745522	G	T	1960.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:49,83:0.63:132
chr19	51331199	rs142271509	G	GT	3377.73	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.44;SOR=1.704;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr19	51331204	.	T	TTG	2031	.	AC=2;AF=1.00;AN=2;BRF=0.34;FR=1.0000;HP=4;HapScore=1;MGOF=3;MMLQ=26;MQ=60.0;NF=3;NR=42;PP=2031;QD=45.7111111111;SC=GCCCTGTTTTTGTTTGTTGTT;SbPval=0.53;Source=Platypus;TC=48;TCF=3;TCR=45;TR=45;WE=51331213;WS=51331194;set=Platypus	GT:AD:AF:DP	1/1:3,45:0.94:48
chr19	51331205	.	G	T	1316	.	AC=2;AF=1.00;AN=2;BRF=0.34;FR=1.0000;HP=8;HapScore=1;MGOF=3;MMLQ=24;MQ=60.0;NF=16;NR=41;PP=1316;QD=23.697740571;SC=CCCTGTTTTTGTTTGTTGTTG;SbPval=0.55;Source=Platypus;TC=60;TCF=17;TCR=43;TR=57;WE=51331213;WS=51331194;set=Platypus	GT:AD:AF:DP	1/1:3,57:0.95:60
chr19	51331205	rs372866981	G	GT	3378.73	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.88;SOR=1.734;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr19	51334890	rs3745523	C	T	953.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:17,43:0.72:60
chr19	51358333	rs266881	C	A	3240.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:59,130:0.69:189
chr19	51358394	rs2292186	C	T	470.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:51,24:0.32:75
chr19	51359453	rs2271095	T	C	167.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.176;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.79;ReadPosRankSum=-0.823;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:19,10:0.34:29
chr19	51359497	rs11573	T	C	649.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.346;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=1.127;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.70;ReadPosRankSum=-0.194;SOR=0.978;set=HC	GT:AD:AF:DP	0/1:48,19:0.28:67
chr19	51359503	rs1135766	A	G	709.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.345;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=3.654;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.59;ReadPosRankSum=-0.969;SOR=1.232;set=HC	GT:AD:AF:DP	0/1:51,23:0.31:74
chr19	51361644	rs1810020	A	G	7994.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr19	51363026	rs2659122	C	T	1331.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr19	51363398	rs1058205	C	T	10001.77	.	AC=2;AF=1.00;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	1/1:0,366:1.00:366
chr19	51363448	rs1058274	A	G	3820.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:71,168:0.70:239
chr19	51379893	rs198972	C	T	2482.77	.	AC=1;AF=0.500;AN=2;DB;DP=480;set=Intersection	GT:AD:AF:DP	0/1:327,144:0.31:471
chr19	51380110	rs6070	T	A	1658.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.257;ClippingRankSum=0.000;DB;DP=388;ExcessHet=3.0103;FS=10.889;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.37;ReadPosRankSum=-0.300;SOR=0.549;set=HC	GT:AD:AF:DP	0/1:277,103:0.27:380
chr19	51380445	rs8105275	G	T	1129.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:123,60:0.33:183
chr19	51381777	rs198977	C	T	3979.77	.	AC=1;AF=0.500;AN=2;DB;DP=670;set=Intersection	GT:AD:AF:DP	0/1:444,222:0.33:666
chr19	51411636	rs2569527	G	T	3794.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr19	51412666	rs1654552	C	A	3069.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:80,131:0.62:211
chr19	51413802	rs198969	G	C	2909.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:73,119:0.62:192
chr19	51447065	rs1701949	T	C	453.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:44,25:0.36:69
chr19	51452250	rs183854	T	C	3733.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr19	51455814	rs2739412	A	C	2343.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.805;ClippingRankSum=0.000;DB;DP=457;ExcessHet=3.0103;FS=1.186;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.19;ReadPosRankSum=-1.201;SOR=0.809;set=HC	GT:AD:AF:DP	0/1:304,148:0.33:452
chr19	51456005	rs2659093	T	G	1139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.140;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=7.983;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.43;ReadPosRankSum=0.516;SOR=0.188;set=HC	GT:AD:AF:DP	0/1:45,34:0.43:79
chr19	51456015	rs11553092	G	A	1016.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.635;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=1.375;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.41;ReadPosRankSum=0.582;SOR=0.359;set=HC	GT:AD:AF:DP	0/1:39,27:0.41:66
chr19	51465200	rs112376245	A	AC	315.73	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:27,16:0.37:43
chr19	51466516	rs1654537	A	G	1035.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:73,48:0.40:121
chr19	51480671	rs59354651	AGGTT	A	2383.73	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:29,60:0.67:89
chr19	51482969	rs1701924	C	T	823.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.248;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.91;ReadPosRankSum=-0.711;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:11,35:0.76:46
chr19	51484984	rs1991820	C	T	2406.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.030;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=3.733;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=30.08;ReadPosRankSum=-0.171;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:22,58:0.72:80
chr19	51484990	rs1991819	T	C	2620.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.952;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=4.933;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=30.12;ReadPosRankSum=0.058;SOR=1.314;set=HC	GT:AD:AF:DP	0/1:24,63:0.72:87
chr19	51485013	rs1991818	C	T	2092.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:38,93:0.71:131
chr19	51485194	rs1654523	C	T	4865.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr19	51485622	rs2659067	A	G	6825.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr19	51487067	rs1275221	T	C	4782.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:93,216:0.70:309
chr19	51487175	rs1624358	T	G	4229.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr19	51504075	rs1701947	A	T	404.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:59,25:0.30:84
chr19	51507020	rs2075802	T	G	1780.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:225,99:0.31:324
chr19	51518222	rs2075696	G	A	238.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:42,16:0.28:58
chr19	51519114	rs2075691	C	T	226.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:21,12:0.36:33
chr19	51519236	rs2075690	A	G	605.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:99,40:0.29:139
chr19	51519259	rs2075689	C	T	756.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:124,47:0.27:171
chr19	51519346	rs1061368	G	C	847.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:135,53:0.28:188
chr19	51519364	rs2075688	T	G	878.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:116,52:0.31:168
chr19	51519451	rs2075687	T	C	475.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:61,27:0.31:88
chr19	51519480	rs12981039	C	A	401.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:46,21:0.31:67
chr19	51520487	rs3745535	A	C	610.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:65,36:0.36:101
chr19	51522286	rs2304156	C	T	893.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.196;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.915;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.61;ReadPosRankSum=-0.349;SOR=0.555;set=HC	GT:AD:AF:DP	0/1:52,25:0.32:77
chr19	51522291	rs2304157	G	C	881.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.296;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.14;ReadPosRankSum=0.557;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:60,27:0.31:87
chr19	51530693	rs1474520	G	A	1158.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.227;ClippingRankSum=0.000;DB;DP=220;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.39;ReadPosRankSum=-0.669;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:147,68:0.32:215
chr19	51535130	rs3745540	A	G	11370.77	.	AC=1;AF=0.500;AN=2;DB;DP=741;set=Intersection	GT:AD:AF:DP	0/1:241,488:0.67:729
chr19	51535460	rs10635364	T	TCC	1582.73	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:19,40:0.68:59
chr19	51563965	rs2569474	G	A	897.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr19	51566943	rs2736433	G	A	1355.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:138,75:0.35:213
chr19	51567176	rs2736431	G	A	1110.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:107,60:0.36:167
chr19	51567990	rs10500306	T	C	1204.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:155,71:0.31:226
chr19	51568029	rs2736434	G	T	813.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:74,40:0.35:114
chr19	51568066	rs12979090	A	G	511.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:44,23:0.34:67
chr19	51602298	rs12983578	C	G	3334.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:74,153:0.67:227
chr19	51628529	rs2075803	A	G	3058.77	.	AC=1;AF=0.500;AN=2;DB;DP=547;set=Intersection	GT:AD:AF:DP	0/1:372,170:0.31:542
chr19	51629585	rs66544068	C	A	1195.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:66,59:0.47:125
chr19	51630482	rs2258983	C	A	2021.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:194,105:0.35:299
chr19	51656218	rs273661	G	C	965.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr19	51656454	rs273662	A	T	3556.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr19	51728477	rs12459419	C	T	3770.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:72,165:0.70:237
chr19	51815243	rs4802779	G	C	203.18	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.172;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=16.93;ReadPosRankSum=0.000;SOR=0.495;set=HC	GT:AD:AF:DP	1/1:1,11:0.92:12
chr19	51831759	rs61422289	G	GA	323.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.377;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=5.069;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.72;ReadPosRankSum=2.002;SOR=1.358;set=HC	GT:AD:AF:DP	0/1:53,34:0.39:87
chr19	51835892	rs11402251	T	TG	9745.73	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr19	51837171	rs7255306	A	G	629.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:79,35:0.31:114
chr19	51837213	rs7255412	A	G	302.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:71,21:0.23:92
chr19	51837332	rs10418551	A	G	3106.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr19	51837344	rs11672414	C	T	909.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:71,43:0.38:114
chr19	51841417	rs34380065	C	T	9065.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:1,326:1.00:327
chr19	51843589	rs6509528	G	T	8443.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr19	51843808	rs7259266	C	T	5972.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr19	51844978	rs8105710	G	T	4951.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr19	51845371	rs10414211	T	G	3302.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr19	51850290	rs1130426	G	A	2092.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:236,120:0.34:356
chr19	51853468	rs4802789	C	T	541.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr19	51856619	rs2004309	T	C	6132.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr19	51856631	rs3889312	G	A	5640.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.01;SOR=1.476;set=HC	GT:AD:AF:DP	1/1:0,120:1.00:120
chr19	51856641	rs3889313	G	C	4909.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.46;SOR=1.524;set=HC	GT:AD:AF:DP	1/1:0,108:1.00:108
chr19	51869346	rs3786625	G	A	403.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:37,20:0.35:57
chr19	51883727	rs2547318	G	A	8538.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr19	51885863	rs374218327	C	G	235.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:30,13:0.30:43
chr19	51919949	rs9304711	G	A	1041.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:22,45:0.67:67
chr19	51920613	rs1010425	C	T	14289.77	.	AC=2;AF=1.00;AN=2;DB;DP=519;set=Intersection	GT:AD:AF:DP	1/1:1,515:1.00:516
chr19	51957482	rs61735205	C	T	2922.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:66,130:0.66:196
chr19	51957493	rs140402033	TG	CA	4544.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.994;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=3.720;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.23;MQRankSum=-2.224;QD=26.12;ReadPosRankSum=1.568;SOR=1.009;set=HC	GT:AD:AF:DP	0/1:60,114:0.66:174
chr19	51957497	rs147729418	C	G	4454.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.425;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=2.093;MLEAC=1;MLEAF=0.500;MQ=59.17;MQRankSum=-2.171;QD=27.50;ReadPosRankSum=1.826;SOR=0.895;set=HC	GT:AD:AF:DP	0/1:54,108:0.67:162
chr19	51957503	rs141020441	A	G	4184.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.126;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=3.128;MLEAC=1;MLEAF=0.500;MQ=59.00;MQRankSum=-2.323;QD=27.71;ReadPosRankSum=1.179;SOR=1.017;set=HC	GT:AD:AF:DP	0/1:51,100:0.66:151
chr19	51957506	rs149859818	T	C	4016.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.881;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=2.281;MLEAC=1;MLEAF=0.500;MQ=58.97;MQRankSum=-2.244;QD=27.51;ReadPosRankSum=0.145;SOR=0.934;set=HC	GT:AD:AF:DP	0/1:47,99:0.68:146
chr19	51981753	rs11878388	G	C	953.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:34,42:0.55:76
chr19	51981965	rs75818312	G	A	2309.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:62,105:0.63:167
chr19	51984725	rs8106673	T	A	6598.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr19	51994813	rs16982733	G	T	519.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:7,22:0.76:29
chr19	51994851	rs16982735	C	G	893.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:14,37:0.73:51
chr19	52000192	rs144032115	A	G	120.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.488;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=4.363;MLEAC=1;MLEAF=0.500;MQ=58.26;MQRankSum=-7.673;QD=1.42;ReadPosRankSum=2.472;SOR=1.336;set=HC	GT:AD:AF:DP	0/1:72,13:0.15:85
chr19	52000624	rs3752135	T	G	3428.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr19	52000672	rs3829658	G	A	5427.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr19	52001485	rs11668530	G	A	10557.77	.	AC=2;AF=1.00;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	1/1:0,397:1.00:397
chr19	52002317	rs4801871	G	C	1018.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.12;SOR=1.387;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr19	52002488	rs968491	C	A	2498.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr19	52002729	rs2009362	G	A	4044.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr19	52003058	rs10420446	C	T	3180.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr19	52003089	rs10420457	C	T	2913.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr19	52003331	rs6509544	G	C	10612.77	.	AC=2;AF=1.00;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	1/1:1,376:1.00:377
chr19	52004469	rs3810108	C	T	5319.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr19	52004551	rs3810109	C	T	9572.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:1,344:1.00:345
chr19	52004743	rs3810110	G	A	18333.77	.	AC=2;AF=1.00;AN=2;DB;DP=687;set=Intersection	GT:AD:AF:DP	1/1:0,679:1.00:679
chr19	52004791	rs66949844	G	GC	28336.73	.	AC=2;AF=1.00;AN=2;DB;DP=654;set=Intersection	GT:AD:AF:DP	1/1:1,626:1.00:627
chr19	52004795	rs61742108	G	T	28597.77	.	AC=2;AF=1.00;AN=2;DB;DP=648;set=Intersection	GT:AD:AF:DP	1/1:1,643:1.00:644
chr19	52030897	rs117737864	G	A	680.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:9,29:0.76:38
chr19	52031162	rs897783	A	G	2772.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr19	52031648	rs10419617	A	G	4198.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr19	52032964	rs3976745	C	G	14763.77	.	AC=2;AF=1.00;AN=2;DB;DP=547;set=Intersection	GT:AD:AF:DP	1/1:0,538:1.00:538
chr19	52033158	rs35931837	C	T	2000.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:212,110:0.34:322
chr19	52033742	rs2305772	G	A	6451.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:1,237:1.00:238
chr19	52034338	rs146883710	CG	C	2747.73	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:44,93:0.68:137
chr19	52034940	rs1551559	C	T	2926.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr19	52097177	rs7253296	T	C	3334.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:53,134:0.72:187
chr19	52097401	rs35740364	T	C	7030.77	.	AC=1;AF=0.500;AN=2;DB;DP=1048;set=Intersection	GT:AD:AF:DP	0/1:661,374:0.36:1035
chr19	52101918	rs1868947	T	C	1040.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.365;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=0.551;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.82;ReadPosRankSum=0.000;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:153,63:0.29:216
chr19	52104489	rs8113451	C	G	1181.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:43,48:0.53:91
chr19	52104560	rs3752127	T	C	4782.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr19	52104713	rs3752126	G	C	2740.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr19	52130788	rs8104955	G	A	2085.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.924;ClippingRankSum=0.000;DB;DP=415;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.10;ReadPosRankSum=-1.429;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:283,126:0.31:409
chr19	52130830	rs8107754	C	A	6545.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:2,238:0.99:240
chr19	52130925	rs8108074	G	A	506.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:55,26:0.32:81
chr19	52132405	rs76610544	G	A	225.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.451;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=3.231;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.18;ReadPosRankSum=-1.555;SOR=0.245;set=HC	GT:AD:AF:DP	0/1:43,11:0.20:54
chr19	52132425	rs79955662	A	C	259.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.707;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=6.218;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.53;ReadPosRankSum=0.639;SOR=0.485;set=HC	GT:AD:AF:DP	0/1:38,9:0.19:47
chr19	52132524	.	TAC	T,TACACACAC	993.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.55;QD=25.48;SOR=2.737;set=HC	GT:AD:AF:DP	1/2:1,13,25:0.33,0.64:39
chr19	52148952	.	TAC	T,TACAC	100.73	.	AC=1,0;AF=0.500,0.00;AN=2;DP=76;set=Intersection	GT:AF:DP	0/1:0.17:60
chr19	52148980	rs11424909	C	CA	90.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.994;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=2.800;MLEAC=1;MLEAF=0.500;MQ=57.71;MQRankSum=-4.549;QD=1.18;ReadPosRankSum=3.021;SOR=1.338;set=HC	GT:AD:AF:DP	0/1:64,13:0.17:77
chr19	52148981	.	C	A	273	.	AC=1;AF=0.500;AN=2;BRF=0.49;FR=0.5000;HP=5;HapScore=1;MGOF=16;MMLQ=24;MQ=56.21;NF=19;NR=7;PP=273;QD=11.8373543287;SC=ACACACACACCCCCCTCACTC;SbPval=0.78;Source=Platypus;TC=71;TCF=47;TCR=24;TR=26;WE=52148989;WS=52148971;set=Platypus	GT:AD:AF:DP	1/0:45,26:0.37:71
chr19	52148981	rs2100297	C	CA	447.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.612;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=4.546;MLEAC=1;MLEAF=0.500;MQ=57.74;MQRankSum=-4.962;QD=5.39;ReadPosRankSum=3.226;SOR=1.452;set=HC	GT:AD:AF:DP	0/1:62,21:0.25:83
chr19	52208277	rs11382950	G	GC	5292.73	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr19	52208390	rs117471602	C	T	3846.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:87,167:0.66:254
chr19	52217405	rs75977318	G	A	4371.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:75,181:0.71:256
chr19	52222552	rs11084112	G	A	8435.77	.	AC=1;AF=0.500;AN=2;DB;DP=547;set=Intersection	GT:AD:AF:DP	0/1:163,379:0.70:542
chr19	52222689	.	C	T	2126.77	.	AC=1;AF=0.500;AN=2;DP=493;set=Intersection	GT:AD:AF:DP	0/1:350,132:0.27:482
chr19	52223121	rs7248778	A	G	2613.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr19	52223180	rs56166910	A	G	280.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.095;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=3.319;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.05;ReadPosRankSum=-0.834;SOR=0.391;set=HC	GT:AD:AF:DP	0/1:69,23:0.25:92
chr19	52223251	rs59168688	T	G	1117.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.92;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr19	52223266	rs57088533	T	C	1018.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.75;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr19	52223329	rs137889042	GTC	G	94.73	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:8,5:0.38:13
chr19	52227137	rs58597876	T	TACACAC	1225.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.988;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=1.101;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.59;ReadPosRankSum=-0.726;SOR=0.929;set=HC	GT:AD:AF:DP	0/1:40,44:0.52:84
chr19	52249071	rs5828493	CT	C	148.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.753;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=5.552;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.37;ReadPosRankSum=-0.421;SOR=0.083;set=HC	GT:AD:AF:DP	0/1:17,17:0.50:34
chr19	52249211	rs867228	T	G	3871.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:82,177:0.68:259
chr19	52249672	rs1042229	A	G	8439.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.146;ClippingRankSum=0.000;DB;DP=334;ExcessHet=3.0103;FS=3.092;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.50;ReadPosRankSum=-0.089;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:117,214:0.65:331
chr19	52249680	rs5030880	T	A	8678.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.434;ClippingRankSum=0.000;DB;DP=341;ExcessHet=3.0103;FS=4.421;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.60;ReadPosRankSum=-0.864;SOR=0.590;set=HC	GT:AD:AF:DP	0/1:116,223:0.66:339
chr19	52249702	rs2070746	G	T	2160.77	.	AC=1;AF=0.500;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	0/1:213,115:0.35:328
chr19	52250216	rs5030878	A	G	2787.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr19	52327784	rs3752125	C	T	17633.77	.	AC=2;AF=1.00;AN=2;DB;DP=661;set=Intersection	GT:AD:AF:DP	1/1:2,643:1.00:645
chr19	52376507	rs2288868	T	C	9811.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:0,360:1.00:360
chr19	52376952	rs8107969	T	A	4677.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr19	52380681	rs3764540	T	A	1534.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:17,55:0.76:72
chr19	52381552	rs12151288	A	G	500.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:8,17:0.68:25
chr19	52381616	rs17778649	G	A	1402.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:31,57:0.65:88
chr19	52381709	rs373536710	C	T	1611.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:170,91:0.35:261
chr19	52381862	rs12150982	C	A	1372.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:34,61:0.64:95
chr19	52383510	rs8110531	C	T	4682.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:104,203:0.66:307
chr19	52383556	rs8110546	C	A	6808.77	.	AC=1;AF=0.500;AN=2;DB;DP=469;set=Intersection	GT:AD:AF:DP	0/1:162,305:0.65:467
chr19	52383569	rs8110461	A	C	7551.77	.	AC=1;AF=0.500;AN=2;DB;DP=511;set=Intersection	GT:AD:AF:DP	0/1:171,337:0.66:508
chr19	52400384	rs73065050	C	T	1281.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:110,66:0.38:176
chr19	52403516	rs1549931	T	C	6191.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr19	52443377	rs10409737	A	G	562.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:45,25:0.36:70
chr19	52443405	rs10411484	T	C	823.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:73,42:0.37:115
chr19	52448669	rs11880193	G	C	2229.77	.	AC=1;AF=0.500;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	0/1:228,117:0.34:345
chr19	52449072	rs10688542	C	CTG	1022.73	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:62,30:0.33:92
chr19	52468034	rs4986770	G	A	321.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:48,18:0.27:66
chr19	52468203	rs2278415	T	A	5299.77	.	AC=1;AF=0.500;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	0/1:113,238:0.68:351
chr19	52468587	rs3764538	G	T	6376.77	.	AC=1;AF=0.500;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	0/1:141,280:0.67:421
chr19	52468998	rs4988334	A	G	6970.77	.	AC=1;AF=0.500;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	0/1:155,299:0.66:454
chr19	52469526	rs79047548	G	T	1069.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.690;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.59;ReadPosRankSum=0.176;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:64,37:0.37:101
chr19	52469534	rs72177430	G	GT	936.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.860;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.15;ReadPosRankSum=1.563;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:56,28:0.33:84
chr19	52471769	rs2278417	C	T	2873.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr19	52471785	rs2278418	T	A	1441.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:26,60:0.70:86
chr19	52471813	rs2278419	T	C	3190.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:1,112:0.99:113
chr19	52471872	rs2278420	A	G	2962.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:79,139:0.64:218
chr19	52472295	rs4986773	A	G	6773.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr19	52496149	rs16983353	C	T	7682.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr19	52497250	rs1978717	G	A	11805.77	.	AC=2;AF=1.00;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	1/1:2,422:1.00:424
chr19	52497943	rs10500311	G	A	3119.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr19	52503658	rs58197197	T	C	1784.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.803;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=1.723;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.37;ReadPosRankSum=-1.837;SOR=0.500;set=HC	GT:AD:AF:DP	0/1:33,76:0.70:109
chr19	52504920	rs2903709	T	C	1146.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr19	52505233	rs2304144	A	G	1688.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:202,98:0.33:300
chr19	52505641	rs10714016	GT	G	6912.73	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr19	52506985	rs1433089	T	C	4872.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:86,221:0.72:307
chr19	52510420	rs73052066	G	A	232.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:22,11:0.33:33
chr19	52511217	rs8108118	G	A	965.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:101,49:0.33:150
chr19	52516360	rs11671702	C	T	125.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr19	52519608	rs8104890	C	T	11240.77	.	AC=2;AF=1.00;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	1/1:0,410:1.00:410
chr19	52520372	rs45596739	C	T	905.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:97,47:0.33:144
chr19	52520607	rs61574510	C	T	2799.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:73,124:0.63:197
chr19	52520714	rs12976476	G	T	1728.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr19	52521110	rs73052087	G	C	130.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr19	52521192	rs61287503	A	C	1835.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr19	52521296	rs9636139	G	A	2991.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr19	52521928	rs12610953	G	A	233.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr19	52537576	rs11666149	T	G	7482.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr19	52538428	rs11881700	A	G	994.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:119,55:0.32:174
chr19	52544610	rs11882305	G	A	130.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.129;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=1.937;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.36;ReadPosRankSum=-0.984;SOR=0.212;set=HC	GT:AD:AF:DP	0/1:21,9:0.30:30
chr19	52570714	rs16983412	C	G	1226.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:173,68:0.28:241
chr19	52570783	rs16983414	A	G	611.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.163;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=3.265;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.44;ReadPosRankSum=-1.342;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:138,40:0.22:178
chr19	52579509	rs7359836	T	C	2463.77	.	AC=1;AF=0.500;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	0/1:256,133:0.34:389
chr19	52587907	rs11084141	G	A	4296.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.509;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.13;ReadPosRankSum=0.377;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:61,110:0.64:171
chr19	52587917	rs11084142	A	G	2389.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.255;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.85;ReadPosRankSum=0.090;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:70,116:0.62:186
chr19	52693289	rs67495004	G	GC	231.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.258;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=1.962;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.03;ReadPosRankSum=1.159;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:93,21:0.18:114
chr19	52704961	rs10420138	T	C	1990.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:201,105:0.34:306
chr19	52724095	rs4802905	T	C	2153.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr19	52786700	rs372249749	C	CT	73.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.939;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=2.583;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=2.066;QD=0.68;ReadPosRankSum=0.766;SOR=1.214;set=HC	GT:AD:AF:DP	0/1:85,23:0.21:108
chr19	52793261	rs10418171	G	A	708.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:50,34:0.40:84
chr19	52800516	rs67621412	C	A	895.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.703;ClippingRankSum=0.000;DB;DP=284;ExcessHet=3.0103;FS=1.100;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.63;ReadPosRankSum=1.254;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:180,67:0.27:247
chr19	52803669	rs3217319	CTG	C	11735.73	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr19	52825032	rs13343641	C	T	877.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.830;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=0.590;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.35;ReadPosRankSum=0.284;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:149,53:0.26:202
chr19	52825235	rs8102373	A	G	5955.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr19	52852523	rs321953	T	C	4994.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr19	52869022	rs2241586	G	T	2787.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr19	52869278	rs321937	G	C	4636.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr19	52869312	rs162120	T	C	5198.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr19	52869534	rs162119	G	A	8758.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr19	52870052	rs1054612	C	G	3706.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:74,170:0.70:244
chr19	52873023	rs707312	A	G	1181.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr19	52882733	rs10445583	T	C	580.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:37,31:0.46:68
chr19	52882805	rs10445584	C	T	1131.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:32,33:0.51:65
chr19	52882824	rs10445585	T	A	996.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:20,27:0.57:47
chr19	52887145	rs34470614	TA	T	2304.73	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:50,107:0.68:157
chr19	52887246	rs34678014	T	TCAA	3931.73	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:49,99:0.67:148
chr19	52887282	rs324125	A	G	1176.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:107,58:0.35:165
chr19	52887427	rs8104808	A	C	8812.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.429;ClippingRankSum=0.000;DB;DP=347;ExcessHet=3.0103;FS=1.343;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.77;ReadPosRankSum=1.224;SOR=0.790;set=HC	GT:AD:AF:DP	0/1:120,222:0.65:342
chr19	52887437	rs8104812	A	C	9078.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.069;ClippingRankSum=0.000;DB;DP=358;ExcessHet=3.0103;FS=0.409;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.72;ReadPosRankSum=-0.243;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:118,235:0.67:353
chr19	52887904	rs2042913	T	C	3583.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:112,169:0.60:281
chr19	52888048	rs324124	G	A	4662.77	.	AC=1;AF=0.500;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	0/1:137,212:0.61:349
chr19	52888070	.	T	TTTGGGAGGCCGAGGCGG	884.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.053;ClippingRankSum=0.000;DP=439;ExcessHet=3.0103;FS=58.212;MLEAC=1;MLEAF=0.500;MQ=59.31;MQRankSum=-2.823;QD=2.32;ReadPosRankSum=-0.469;SOR=4.036;set=HC	GT:AD:AF:DP	0/1:332,50:0.13:382
chr19	52888074	.	G	GATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAA	165.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.170;ClippingRankSum=0.000;DP=397;ExcessHet=3.0103;FS=48.069;MLEAC=1;MLEAF=0.500;MQ=59.23;MQRankSum=-4.567;QD=0.45;ReadPosRankSum=-2.905;SOR=5.592;set=HC	GT:AD:AF:DP	0/1:340,26:0.07:366
chr19	52888210	rs56151179	T	C	3952.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:113,177:0.61:290
chr19	52888245	rs55748277	A	G	4274.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:108,175:0.62:283
chr19	52888620	rs3170100	T	G	1252.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:27,54:0.67:81
chr19	52893473	rs7253837	A	G	669.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:10,28:0.74:38
chr19	52893538	rs2657917	TG	CA	1270.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.426;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=2.776;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.99;ReadPosRankSum=-1.631;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:119,40:0.25:159
chr19	52905067	rs324091	A	C	3538.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr19	52909303	rs2290745	C	T	15700.77	.	AC=2;AF=1.00;AN=2;DB;DP=604;set=Intersection	GT:AD:AF:DP	1/1:2,595:1.00:597
chr19	52909458	rs2245620	T	G	2164.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr19	52909989	rs11668956	A	G	2152.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr19	52917590	rs162124	G	A	5695.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr19	52917626	rs162123	A	G	3175.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr19	52920006	rs10664588	C	CTG	9170.73	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr19	52937530	rs2560997	C	T	1581.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr19	52938361	rs11084161	C	A	8649.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:1,330:1.00:331
chr19	52938417	rs11084162	A	G	8446.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:1,316:1.00:317
chr19	52938459	rs11084163	A	G	5482.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr19	52940931	rs1428179	A	T	461.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr19	52941171	rs1428180	T	C	3776.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr19	52941540	rs1366257	G	A	6930.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr19	52941618	rs1366258	A	C	7718.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:1,260:1.00:261
chr19	52941847	rs1366259	A	T	7365.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr19	52942159	rs2608497	A	G	13715.77	.	AC=2;AF=1.00;AN=2;DB;DP=547;set=Intersection	GT:AD:AF:DP	1/1:49,492:0.91:541
chr19	52942445	rs2608498	C	T	23185.77	.	AC=2;AF=1.00;AN=2;DB;DP=605;set=Intersection	GT:AD:AF:DP	1/1:0,593:1.00:593
chr19	52942495	rs2561001	G	A	22778.77	.	AC=2;AF=1.00;AN=2;DB;DP=587;set=Intersection	GT:AD:AF:DP	1/1:0,581:1.00:581
chr19	52942734	rs2446079	C	T	3821.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr19	52954507	rs324104	T	C	5430.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr19	53014346	rs161931	G	A	9224.77	.	AC=1;AF=0.500;AN=2;DB;DP=583;set=Intersection	GT:AD:AF:DP	0/1:182,395:0.68:577
chr19	53015384	rs4802965	A	G	5557.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:89,233:0.72:322
chr19	53075519	rs8104138	G	T	663.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:52,36:0.41:88
chr19	53075734	rs3826655	C	T	429.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:30,22:0.42:52
chr19	53075758	rs77054172	G	A	294.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:10,12:0.55:22
chr19	53077411	rs162832	T	C	1955.77	.	AC=1;AF=0.500;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	0/1:236,105:0.31:341
chr19	53085416	rs12975229	G	A	1700.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:141,86:0.38:227
chr19	53085631	.	A	T	2469.77	.	AC=1;AF=0.500;AN=2;DP=481;set=Intersection	GT:AD:AF:DP	0/1:339,138:0.29:477
chr19	53085659	rs366793	C	T	2610.77	.	AC=1;AF=0.500;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	0/1:315,141:0.31:456
chr19	53085813	rs3745101	T	C	1976.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:180,98:0.35:278
chr19	53086124	rs373554	C	A	2617.77	.	AC=1;AF=0.500;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	0/1:253,141:0.36:394
chr19	53086598	rs3745102	G	A	2018.77	.	AC=1;AF=0.500;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	0/1:276,115:0.29:391
chr19	53209553	rs4085566	GG	AT	12533.77	.	AC=1;AF=0.500;AN=2;DB;DP=510;JOINED;set=Intersection	GT:AD:AF:DP	0/1:189,315:0.62:504
chr19	53270384	rs1820128	A	G	13846.77	.	AC=2;AF=1.00;AN=2;DB;DP=514;set=Intersection	GT:AD:AF:DP	1/1:0,500:1.00:500
chr19	53303527	rs8107444	A	G	12834.77	.	AC=2;AF=1.00;AN=2;DB;DP=489;set=Intersection	GT:AD:AF:DP	1/1:0,482:1.00:482
chr19	53303705	rs10417163	T	G	12264.77	.	AC=2;AF=1.00;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	1/1:1,422:1.00:423
chr19	53311395	rs7257656	G	A	13538.77	.	AC=2;AF=1.00;AN=2;DB;DP=509;set=Intersection	GT:AD:AF:DP	1/1:2,497:1.00:499
chr19	53369486	rs35128688	CAT	C	600.73	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:15,20:0.57:35
chr19	53370013	rs12973227	C	G	1196.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:62,58:0.48:120
chr19	53370122	rs71700464	CAAAAAA	C	321.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.835;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=2.218;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.93;ReadPosRankSum=0.926;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:6,11:0.65:17
chr19	53384185	rs6509701	C	T	2781.77	.	AC=1;AF=0.500;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	0/1:253,140:0.36:393
chr19	53553125	rs150642692	C	T	2339.77	.	AC=1;AF=0.500;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	0/1:332,145:0.30:477
chr19	53553497	rs2195311	G	A	364.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=30.40;SOR=5.136;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr19	53553686	rs12975552	G	A	695.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:79,36:0.31:115
chr19	53571306	rs2288421	T	C	292.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:26,15:0.37:41
chr19	53572887	rs61732582	T	C	5343.77	.	AC=1;AF=0.500;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	0/1:136,228:0.63:364
chr19	53589677	rs329718	C	T	6796.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr19	53611802	rs61733666	T	G	3084.77	.	AC=1;AF=0.500;AN=2;DB;DP=439;set=Intersection	GT:AD:AF:DP	0/1:269,160:0.37:429
chr19	53612311	rs4803051	T	C	8510.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr19	53612745	rs1133327	T	C	7093.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr19	53612757	rs1054485	T	G	7879.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr19	53618698	rs12609961	C	T	460.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr19	53619864	rs71899853	CTCT	C	426.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=63.51;QD=35.56;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr19	53625645	rs34974523	C	T	2875.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr19	53643497	rs1650972	C	T	2319.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr19	53644443	rs1661935	G	A	18098.77	.	AC=2;AF=1.00;AN=2;DB;DP=680;set=Intersection	GT:AD:AF:DP	1/1:5,665:0.99:670
chr19	53651845	rs10694633	T	TTC	7162.73	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr19	53667637	rs4803054	C	T	168.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.544;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=1.280;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.68;ReadPosRankSum=1.089;SOR=0.442;set=HC	GT:AD:AF:DP	0/1:51,12:0.19:63
chr19	53667804	rs4801958	C	T	2046.77	.	AC=1;AF=0.500;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	0/1:235,120:0.34:355
chr19	53667913	rs12459469	A	G	1778.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.185;ClippingRankSum=0.000;DB;DP=414;ExcessHet=3.0103;FS=0.596;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.35;ReadPosRankSum=1.673;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:299,110:0.27:409
chr19	53667940	rs12459471	A	G	1675.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.631;ClippingRankSum=0.000;DB;DP=412;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.09;ReadPosRankSum=-2.259;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:299,111:0.27:410
chr19	53669273	rs4801959	T	C	7886.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr19	53669492	rs12460170	A	G	1911.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:184,99:0.35:283
chr19	53669653	rs12460233	C	T	476.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:18,19:0.51:37
chr19	53678924	rs4289099	C	A	719.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:60,33:0.35:93
chr19	53706984	rs12610332	G	A	11935.77	.	AC=2;AF=1.00;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	1/1:0,444:1.00:444
chr19	53707097	rs11084225	T	C	12062.77	.	AC=2;AF=1.00;AN=2;DB;DP=472;set=Intersection	GT:AD:AF:DP	1/1:0,466:1.00:466
chr19	53707289	rs7249771	C	T	14813.77	.	AC=2;AF=1.00;AN=2;DB;DP=549;set=Intersection	GT:AD:AF:DP	1/1:0,542:1.00:542
chr19	53716190	rs10775558	A	G	6225.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr19	53716278	rs10853858	A	G	7893.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr19	53716460	rs10853859	A	G	3600.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:1,130:0.99:131
chr19	53727097	rs36114232	G	A	2458.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr19	53727100	rs35443981	T	TTA	2547.73	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr19	53727145	rs112228801	G	GGTTTT	2152.73	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:34,55:0.62:89
chr19	53727282	rs11084227	A	G	2838.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:3,100:0.97:103
chr19	53727392	rs10401578	T	C	4060.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:1,138:0.99:139
chr19	53727573	rs12985503	A	G	9706.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	1/1:0,351:1.00:351
chr19	53727591	rs10401984	T	C	14032.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.97;QD=44.98;SOR=0.918;set=HC	GT:AD:AF:DP	1/1:0,312:1.00:312
chr19	53727591	.	TCA	CCG	2947	.	AC=2;AF=1.00;AN=2;BRF=0.43;FR=1.0000;HP=3;HapScore=1;MGOF=30;MMLQ=24;MQ=53.93;NF=105;NR=126;PP=2947;QD=20;SC=GTGATACTTTTCAACTGGCTT;SbPval=0.51;Source=Platypus;TC=242;TCF=109;TCR=133;TR=231;WE=53727601;WS=53727581;set=Platypus	GT:AD:AF:DP	1/1:11,231:0.95:242
chr19	53727593	rs11673594	A	G	14032.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.97;QD=44.98;SOR=0.903;set=HC	GT:AD:AF:DP	1/1:0,312:1.00:312
chr19	53727644	rs12972588	T	C	6505.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr19	53728096	rs7248561	A	G	4079.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.45;QD=44.83;SOR=0.959;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr19	53728105	rs7248883	G	C	4302.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.92;QD=43.03;SOR=0.957;set=HC	GT:AD:AF:DP	1/1:0,100:1.00:100
chr19	53728160	rs7248781	C	T	4620.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr19	53728218	rs11666631	G	C	3508.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr19	53728280	rs7248812	A	G	1759.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr19	53733328	.	CT	C	52.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.974;ClippingRankSum=0.000;DP=61;ExcessHet=3.0103;FS=1.622;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=-0.939;QD=1.43;ReadPosRankSum=-0.959;SOR=1.251;set=HC	GT:AD:AF:DP	0/1:27,10:0.27:37
chr19	53740822	rs8113436	T	C	5970.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr19	53741068	rs12984188	C	T	8059.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr19	53741188	rs12984473	C	T	4958.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr19	53754736	rs2965240	T	C	3635.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr19	53760758	rs17305059	T	G	3572.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:96,163:0.63:259
chr19	53762537	rs12609049	C	T	6899.77	.	AC=1;AF=0.500;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	0/1:140,284:0.67:424
chr19	53785265	rs200023470	C	T	48.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.189;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=40.00;MQRankSum=-0.000;QD=6.97;ReadPosRankSum=0.328;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr19	53793042	rs8109165	G	A	2173.77	.	AC=1;AF=0.500;AN=2;DB;DP=478;set=Intersection	GT:AD:AF:DP	0/1:337,135:0.29:472
chr19	53793574	rs2865248	A	G	1616.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:209,93:0.31:302
chr19	53802337	rs1965725	A	C	77.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.59;QD=25.76;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr19	53802455	rs1965722	G	A	547.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=38.86;QD=30.43;SOR=5.892;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr19	53803121	rs75059813	C	G	5905.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr19	53849446	rs4803089	G	A	640.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr19	53849632	rs11406858	G	GC	4075.73	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr19	53849700	rs4803090	G	A	1429.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr19	53854397	rs10415799	G	C	3808.77	.	AC=1;AF=0.500;AN=2;DB;DP=713;set=Intersection	GT:AD:AF:DP	0/1:494,208:0.30:702
chr19	53856349	rs55874600	A	T	6906.77	.	AC=1;AF=0.500;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	0/1:150,296:0.66:446
chr19	53875494	rs7252803	A	T	2254.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:196,113:0.37:309
chr19	53875523	rs7253268	G	A	2108.77	.	AC=1;AF=0.500;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	0/1:241,118:0.33:359
chr19	53875569	rs7253278	G	A	2386.77	.	AC=1;AF=0.500;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	0/1:299,140:0.32:439
chr19	53879561	rs72163028	GACA	G	1583.73	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:21,41:0.66:62
chr19	53884412	rs4438413	G	A	9546.77	.	AC=1;AF=0.500;AN=2;DB;DP=602;set=Intersection	GT:AD:AF:DP	0/1:187,395:0.68:582
chr19	53884607	.	G	A	10202.77	.	AC=1;AF=0.500;AN=2;DP=710;set=Intersection	GT:AD:AF:DP	0/1:247,452:0.65:699
chr19	53905129	.	TAA	T,TA	1996.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.089;ClippingRankSum=0.000;DP=153;ExcessHet=3.0103;FS=4.066;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.21;MQRankSum=0.600;QD=14.47;ReadPosRankSum=0.029;SOR=1.342;set=HC	GT:AD:AF:DP	1/2:14,38,86:0.28,0.62:138
chr19	53905501	.	CTTTTTTT	C	1276.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.352;ClippingRankSum=0.000;DP=120;ExcessHet=3.0103;FS=22.311;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=-1.871;QD=22.80;ReadPosRankSum=2.349;SOR=3.141;set=HC	GT:AD:AF:DP	0/1:12,44:0.79:56
chr19	53910912	rs2061773	G	A	3573.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr19	53911510	rs8182488	G	A	4166.77	.	AC=1;AF=0.500;AN=2;DB;DP=705;set=Intersection	GT:AD:AF:DP	0/1:465,230:0.33:695
chr19	53911973	rs10425136	A	G	23524.77	.	AC=2;AF=1.00;AN=2;DB;DP=903;set=Intersection	GT:AD:AF:DP	1/1:41,854:0.95:895
chr19	53912242	rs10426347	G	A	16270.77	.	AC=2;AF=1.00;AN=2;DB;DP=600;set=Intersection	GT:AD:AF:DP	1/1:0,593:1.00:593
chr19	53912521	rs73059151	G	A	1491.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:174,81:0.32:255
chr19	53926318	rs36087592	T	A	2073.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.636;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=3.424;MLEAC=1;MLEAF=0.500;MQ=50.91;MQRankSum=-0.862;QD=26.93;ReadPosRankSum=-0.143;SOR=0.339;set=HC	GT:AD:AF:DP	0/1:24,53:0.69:77
chr19	53926320	rs34818233	T	G	2073.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.999;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=3.426;MLEAC=1;MLEAF=0.500;MQ=50.51;MQRankSum=-0.837;QD=28.02;ReadPosRankSum=-0.347;SOR=0.380;set=HC	GT:AD:AF:DP	0/1:23,51:0.69:74
chr19	53958126	rs2708743	T	G	14825.77	.	AC=2;AF=1.00;AN=2;DB;DP=535;set=Intersection	GT:AD:AF:DP	1/1:0,528:1.00:528
chr19	53958263	rs1984432	G	A	18972.77	.	AC=2;AF=1.00;AN=2;DB;DP=695;set=Intersection	GT:AD:AF:DP	1/1:0,687:1.00:687
chr19	53959343	rs2708742	G	A	20374.77	.	AC=2;AF=1.00;AN=2;DB;DP=744;set=Intersection	GT:AD:AF:DP	1/1:0,723:1.00:723
chr19	53959568	rs2617726	G	C	20428.77	.	AC=2;AF=1.00;AN=2;DB;DP=754;set=Intersection	GT:AD:AF:DP	1/1:2,740:1.00:742
chr19	53983591	.	C	CATA	223.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.650;ClippingRankSum=0.000;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.52;MQRankSum=-6.576;QD=3.86;ReadPosRankSum=-2.446;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:48,10:0.17:58
chr19	53991335	rs2617675	G	A	365.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr19	53995004	rs2708845	G	A	11215.77	.	AC=2;AF=1.00;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	1/1:0,391:1.00:391
chr19	54007145	rs72487103	G	A	5351.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr19	54072757	rs3746304	C	T	625.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:87,33:0.28:120
chr19	54072782	rs3746303	T	C	359.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:54,22:0.29:76
chr19	54080144	rs8109631	A	G	889.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:158,56:0.26:214
chr19	54172317	rs1968439	A	G	59.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:25,7:0.22:32
chr19	54177273	rs7258128	T	C	107.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:13,7:0.35:20
chr19	54182249	rs7256893	T	C	6328.77	.	AC=1;AF=0.500;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	0/1:132,289:0.69:421
chr19	54185311	rs28653280	C	T	728.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:84,42:0.33:126
chr19	54188219	rs2060230	G	A	11744.77	.	AC=2;AF=1.00;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	1/1:0,444:1.00:444
chr19	54191743	rs57111412	A	G	6270.77	.	AC=1;AF=0.500;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	0/1:124,265:0.68:389
chr19	54191869	rs1988088	A	G	4412.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr19	54194034	rs12975184	T	C	1616.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.078;ClippingRankSum=0.000;DB;DP=340;ExcessHet=3.0103;FS=5.009;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.88;ReadPosRankSum=1.471;SOR=0.998;set=HC	GT:AD:AF:DP	0/1:235,96:0.29:331
chr19	54194049	rs57963210	GAA	G	3096.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.123;ClippingRankSum=0.000;DB;DP=396;ExcessHet=3.0103;FS=3.105;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=2.219;QD=8.17;ReadPosRankSum=0.390;SOR=0.884;set=HC	GT:AD:AF:DP	0/1:269,110:0.29:379
chr19	54194080	rs12973198	A	C	2585.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.389;ClippingRankSum=0.000;DB;DP=514;ExcessHet=3.0103;FS=0.573;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=2.164;QD=5.14;ReadPosRankSum=-0.765;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:352,151:0.30:503
chr19	54197633	rs10413288	A	G	4673.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr19	54201756	rs73057685	C	G	1261.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.353;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=-1.493;QD=9.01;ReadPosRankSum=0.802;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:74,66:0.47:140
chr19	54201810	rs71189852	G	GT	79.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.206;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.02;ReadPosRankSum=1.805;SOR=0.543;set=HC	GT:AD:AF:DP	0/1:61,17:0.22:78
chr19	54204686	rs34886598	G	C	777.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:51,38:0.43:89
chr19	54205961	rs10414727	T	A	3507.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:69,163:0.70:232
chr19	54216777	rs5828551	T	TTTTG	3368.73	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:30,92:0.75:122
chr19	54216813	rs2865855	A	T	1974.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.821;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=2.921;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=0.702;QD=20.57;ReadPosRankSum=1.814;SOR=0.356;set=HC	GT:AD:AF:DP	0/1:18,78:0.81:96
chr19	54220019	.	G	GT	102.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.688;ClippingRankSum=0.000;DP=192;ExcessHet=3.0103;FS=0.880;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.71;ReadPosRankSum=-0.634;SOR=0.797;set=HC	GT:AD:AF:DP	0/1:117,27:0.19:144
chr19	54224191	rs12973211	A	G	2836.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr19	54224285	rs58416318	CA	C	9116.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.822;ClippingRankSum=0.000;DB;DP=410;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.08;MQRankSum=0.142;QD=22.40;ReadPosRankSum=1.154;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:2,405:1.00:407
chr19	54225616	rs10426037	T	A	1604.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr19	54255878	rs56196717	GTTT	G	2041.73	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.12;QD=31.41;SOR=3.398;set=HC	GT:AD:AF:DP	1/1:4,61:0.94:65
chr19	54257185	rs611356	C	G	8820.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.45;QD=46.67;SOR=1.417;set=HC	GT:AD:AF:DP	1/1:0,189:1.00:189
chr19	54257190	rs62144158	AC	GA	9041.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=59.47;QD=44.98;SOR=1.364;set=HC	GT:AD:AF:DP	1/1:0,201:1.00:201
chr19	54261644	rs3901466	C	T	1739.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr19	54264352	.	C	CA	440.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.557;ClippingRankSum=0.000;DP=307;ExcessHet=3.0103;FS=2.611;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.932;QD=1.54;ReadPosRankSum=-0.521;SOR=0.903;set=HC	GT:AD:AF:DP	0/1:227,60:0.21:287
chr19	54291832	rs12983273	C	T	2087.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr19	54307322	rs12460528	G	A	4195.77	.	AC=1;AF=0.500;AN=2;DB;DP=615;set=Intersection	GT:AD:AF:DP	0/1:386,224:0.37:610
chr19	54308554	rs4806773	C	T	941.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.033;ClippingRankSum=0.000;DB;DP=263;ExcessHet=3.0103;FS=1.769;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.59;ReadPosRankSum=1.251;SOR=0.546;set=HC	GT:AD:AF:DP	0/1:195,67:0.26:262
chr19	54308775	rs34166148	C	CT	350.06	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.107;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=3.050;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=12.97;ReadPosRankSum=0.683;SOR=2.066;set=HC	GT:AD:AF:DP	1/1:4,23:0.85:27
chr19	54310961	rs2866112	G	C	1263.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:157,71:0.31:228
chr19	54311090	rs11084300	C	T	262.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:28,13:0.32:41
chr19	54312796	rs58572468	C	G	310.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.317;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=5.518;MLEAC=1;MLEAF=0.500;MQ=59.20;MQRankSum=-0.364;QD=14.80;ReadPosRankSum=0.408;SOR=0.111;set=HC	GT:AD:AF:DP	0/1:4,17:0.81:21
chr19	54313927	rs144287432	C	T	1936.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:152,95:0.38:247
chr19	54314585	rs6509827	G	A	3103.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr19	54327440	rs4539722	G	A	7305.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr19	54376625	rs112349507	C	CA	93.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.727;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=5.188;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.70;ReadPosRankSum=0.519;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:41,14:0.25:55
chr19	54385437	rs307942	A	C	5006.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr19	54385820	rs2547362	C	T	10696.77	.	AC=2;AF=1.00;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	1/1:0,364:1.00:364
chr19	54387313	rs307956	A	T	1965.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr19	54394965	rs3745406	T	C	2465.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.538;ClippingRankSum=0.000;DB;DP=467;ExcessHet=3.0103;FS=0.556;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.38;ReadPosRankSum=-2.007;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:309,149:0.33:458
chr19	54395098	rs3745405	G	T	1061.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:127,57:0.31:184
chr19	54396006	.	GCACA	G	422.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.461;ClippingRankSum=0.000;DP=73;ExcessHet=3.0103;FS=4.541;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.95;ReadPosRankSum=-3.662;SOR=0.241;set=HC	GT:AD:AF:DP	0/1:51,20:0.28:71
chr19	54396008	.	A	G	1276	.	AC=1;AF=0.500;AN=2;BRF=0.28;FR=0.5000;HP=2;HapScore=2;MGOF=24;MMLQ=24;MQ=59.52;NF=13;NR=4;PP=1276;QD=77.1041889734;SC=CAGCATGCGCACACACACACA;SbPval=0.95;Source=Platypus;TC=67;TCF=39;TCR=28;TR=17;WE=54396054;WS=54395994;set=Platypus	GT:AD:AF:DP	0/1:50,17:0.25:67
chr19	54396012	.	A	G	377.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.894;ClippingRankSum=0.000;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.47;ReadPosRankSum=-1.693;SOR=0.590;set=HC	GT:AD:AF:DP	0/1:53,16:0.23:69
chr19	54396046	rs146099614	G	GCACA	601.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.827;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=1.359;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.36;ReadPosRankSum=3.133;SOR=0.963;set=HC	GT:AD:AF:DP	0/1:52,20:0.28:72
chr19	54401602	rs41311973	G	C	1087.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:122,55:0.31:177
chr19	54401908	rs41303043	T	G	450.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:14,17:0.55:31
chr19	54403801	rs2242245	T	C	10083.77	.	AC=1;AF=0.500;AN=2;DB;DP=656;set=Intersection	GT:AD:AF:DP	0/1:198,438:0.69:636
chr19	54403925	rs2242244	T	C	10168.77	.	AC=1;AF=0.500;AN=2;DB;DP=738;set=Intersection	GT:AD:AF:DP	0/1:262,468:0.64:730
chr19	54406191	rs60880883	T	C	1119.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:15,45:0.75:60
chr19	54409512	rs45548139	G	A	5514.77	.	AC=1;AF=0.500;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	0/1:145,245:0.63:390
chr19	54418628	.	G	A	4906.77	.	AC=1;AF=0.500;AN=2;DP=358;set=Intersection	GT:AD:AF:DP	0/1:125,226:0.64:351
chr19	54445594	rs11324363	AG	A	8851.73	.	AC=1;AF=0.500;AN=2;DB;DP=552;set=Intersection	GT:AD:AF:DP	0/1:164,327:0.67:491
chr19	54483311	rs71949256	CGT	C	278.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.148;ClippingRankSum=0.000;DB;DP=269;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.405;QD=2.56;ReadPosRankSum=-0.658;SOR=0.465;set=HC	GT:AD:AF:DP	0/1:86,23:0.21:109
chr19	54483335	.	TGTGTG	CGCGCG	2816	.	AC=1;AF=0.500;AN=2;BRF=0.34;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=12;MMLQ=24;MQ=59.73;NF=0,2;NR=33,67;PP=879,2816;QD=28.5596325716;SC=TGTGTGTGTGTGTGTGCGCGC;SbPval=1.0;Source=Platypus;TC=144;TCF=24;TCR=120;TR=33,69;WE=54483347;WS=54483325;set=Platypus	GT:AD:AF:DP	0/1:111,33:0.23:144
chr19	54483335	.	TGTGTG	TGCGTGTG	2816	.	AC=1;AF=0.500;AN=2;BRF=0.34;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=12;MMLQ=24;MQ=59.73;NF=0,2;NR=33,67;PP=879,2816;QD=28.5596325716;SC=TGTGTGTGTGTGTGTGCGCGC;SbPval=1.0;Source=Platypus;TC=144;TCF=24;TCR=120;TR=33,69;WE=54483347;WS=54483325;set=Platypus	GT:AD:AF:DP	0/1:53,69:0.57:122
chr19	54483335	.	T	C,TGC	1570.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.854;ClippingRankSum=0.000;DP=211;ExcessHet=3.0103;FS=4.405;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.97;MQRankSum=-0.419;QD=16.36;ReadPosRankSum=-0.527;SOR=2.078;set=HC	GT:AD:AF:DP	1/2:16,30,50:0.31,0.52:96
chr19	54483337	rs202060954	T	C	3683.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.348;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=5.960;MLEAC=2;MLEAF=1.000;MQ=59.97;MQRankSum=-0.278;QD=36.47;ReadPosRankSum=-1.575;SOR=2.391;set=HC	GT:AD:AF:DP	1/1:9,92:0.91:101
chr19	54483337	.	TGT	CGC	2762	.	AC=2;AF=1.00;AN=2;BRF=0.34;FR=0.5000;HP=2;HapScore=1;MGOF=16;MMLQ=24;MQ=59.7;NF=8;NR=91;PP=2762;QD=20;SC=TGTGTGTGTGTGTGCGCGCGC;SbPval=0.95;Source=Platypus;TC=135;TCF=20;TCR=115;TR=99;WE=54483347;WS=54483325;set=Platypus	GT:AD:AF:DP	1/1:36,99:0.73:135
chr19	54483339	rs12979538	T	C	5050.73	.	AC=2;AF=1.00;AN=2;DB;DP=188;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.97;QD=41.06;SOR=3.990;set=HC	GT:AD:AF:DP	1/1:0,123:1.00:123
chr19	54486124	.	G	T	247.77	.	AC=1;AF=0.500;AN=2;DP=22;set=Intersection	GT:AD:AF:DP	0/1:5,13:0.72:18
chr19	54544189	rs2303558	C	T	2654.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr19	54545186	rs73058793	C	T	6098.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr19	54545274	rs67563163	G	T	2329.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr19	54545390	rs34610948	A	AC	2553.73	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr19	54545531	rs2433724	T	C	4215.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr19	54554942	rs4442924	C	A	398.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr19	54561493	rs202006993	T	TA	1150.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.051;ClippingRankSum=0.000;DB;DP=296;ExcessHet=3.0103;FS=1.067;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=0.000;QD=4.22;ReadPosRankSum=-0.073;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:177,96:0.35:273
chr19	54566901	rs662850	C	T	17085.77	.	AC=2;AF=1.00;AN=2;DB;DP=645;set=Intersection	GT:AD:AF:DP	1/1:2,634:1.00:636
chr19	54579363	rs4806706	C	A	13099.77	.	AC=2;AF=1.00;AN=2;DB;DP=491;set=Intersection	GT:AD:AF:DP	1/1:1,489:1.00:490
chr19	54599314	rs142964852	C	G	543.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:49,28:0.36:77
chr19	54600232	rs1657535	A	C	6407.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr19	54603104	rs368883898	CT	C	45.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.953;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=1.519;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.75;ReadPosRankSum=-0.872;SOR=0.972;set=HC	GT:AD:AF:DP	0/1:46,15:0.25:61
chr19	54603130	rs4806708	C	G	245.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:27,16:0.37:43
chr19	54604194	rs3760698	G	C	5534.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:110,244:0.69:354
chr19	54606209	rs254260	T	G	4416.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr19	54606405	rs254259	T	C	11041.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	1/1:2,380:0.99:382
chr19	54609027	rs254257	A	G	13253.77	.	AC=2;AF=1.00;AN=2;DB;DP=500;set=Intersection	GT:AD:AF:DP	1/1:2,478:1.00:480
chr19	54609148	rs66538983	C	T	2720.77	.	AC=1;AF=0.500;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	0/1:285,148:0.34:433
chr19	54609170	rs254256	A	G	15545.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.708;ClippingRankSum=0.000;DB;DP=595;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.35;ReadPosRankSum=1.001;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:209,381:0.65:590
chr19	54609178	rs254255	C	G	16205.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.989;ClippingRankSum=0.000;DB;DP=675;ExcessHet=3.0103;FS=1.152;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.26;ReadPosRankSum=1.916;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:244,424:0.63:668
chr19	54609374	rs184064268	G	A	2051.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:209,105:0.33:314
chr19	54609612	rs11878334	T	A	256.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:11,13:0.54:24
chr19	54609692	rs254266	T	G	468.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:8,20:0.71:28
chr19	54609746	rs8100254	G	C	607.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:12,27:0.69:39
chr19	54610170	rs1061333	C	T	621.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.157;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=0.756;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.61;ReadPosRankSum=0.745;SOR=0.841;set=HC	GT:AD:AF:DP	0/1:133,39:0.23:172
chr19	54611287	rs621147	G	A	1296.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:26,61:0.70:87
chr19	54611560	rs254263	C	G	2108.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:59,89:0.60:148
chr19	54618460	rs144785117	TCTC	T	3079.73	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:146,86:0.37:232
chr19	54625765	rs73062633	C	T	739.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:95,39:0.29:134
chr19	54627039	rs35291886	GCACA	G	1988.73	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:33,70:0.68:103
chr19	54627097	rs2303557	T	C	3869.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr19	54627164	rs1058572	G	A	1611.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:145,81:0.36:226
chr19	54629697	rs254272	T	C	841.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:55,41:0.43:96
chr19	54631376	rs12977981	G	T	135.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.359;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.17;ReadPosRankSum=0.805;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:14,8:0.36:22
chr19	54631376	.	GGT	TGC	22	.	AC=1;AF=0.500;AN=2;BRF=0.41;FR=0.5000;HP=5;HapScore=3;MGOF=0;MMLQ=24;MQ=60.0;NF=5;NR=0;PP=22;QD=15.0935749724;SC=ATACTCGGGGGGTCCGCTCAG;SbPval=1.0;Source=Platypus;TC=16;TCF=12;TCR=4;TR=5;WE=54631386;WS=54631366;set=Platypus	GT:AD:AF:DP	0/1:11,5:0.31:16
chr19	54631378	rs171703	T	C	764.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr19	54631630	rs34990810	C	T	470.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:54,29:0.35:83
chr19	54631877	.	T	TC	83.92	.	AC=2;AF=1.00;AN=2;DP=7;set=Intersection	GT:AD:AF:DP	1/1:2,3:0.60:5
chr19	54631880	rs74716353	T	C	92.96	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:2,3:0.60:5
chr19	54632352	rs608608	C	G	1033.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr19	54632423	rs655240	T	C	2207.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr19	54647078	rs34281370	T	TGG	269.73	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:11,10:0.48:21
chr19	54649671	rs36665	T	C	14833.77	.	AC=2;AF=1.00;AN=2;DB;DP=603;set=Intersection	GT:AD:AF:DP	1/1:10,575:0.98:585
chr19	54651774	rs35247489	C	T	607.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:24,27:0.53:51
chr19	54652203	rs43211	T	C	2919.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:75,130:0.63:205
chr19	54657815	rs2668839	A	G	1391.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.558;ClippingRankSum=0.000;DB;DP=386;ExcessHet=3.0103;FS=3.266;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.63;ReadPosRankSum=-1.009;SOR=0.896;set=HC	GT:AD:AF:DP	0/1:290,93:0.24:383
chr19	54657877	rs4806718	T	C	3068.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:29,123:0.81:152
chr19	54660548	rs150820847	A	T	3723.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:111,165:0.60:276
chr19	54666060	rs12978996	T	C	1466.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:12,42:0.78:54
chr19	54666357	rs2289146	C	G	921.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:15,33:0.69:48
chr19	54667709	.	CT	C	248.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.824;ClippingRankSum=0.000;DP=73;ExcessHet=3.0103;FS=12.893;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.07;ReadPosRankSum=1.856;SOR=3.412;set=HC	GT:AD:AF:DP	0/1:15,26:0.63:41
chr19	54672460	rs6509847	C	T	832.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:24,40:0.62:64
chr19	54675746	.	ATCC	A	629.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.599;ClippingRankSum=0.000;DP=468;ExcessHet=3.0103;FS=0.913;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.49;ReadPosRankSum=0.036;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:379,43:0.10:422
chr19	54677759	rs4806721	T	C	2403.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr19	54691225	rs1865961	T	C	1922.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:38,84:0.69:122
chr19	54694334	rs16985457	G	C	1695.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:20,73:0.78:93
chr19	54695163	rs593073	T	C	91.81	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:1,4:0.80:5
chr19	54696292	rs74269111	CT	C	126.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.164;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=1.003;QD=3.96;ReadPosRankSum=0.261;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:16,16:0.50:32
chr19	54697079	rs7595	C	T	2365.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:68,107:0.61:175
chr19	54697602	rs36622	G	A	2225.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:53,94:0.64:147
chr19	54705182	rs2304525	G	C	1883.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:174,59:0.25:233
chr19	54705207	rs36615	G	A	2195.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:195,75:0.28:270
chr19	54705583	rs78525177	A	G	4126.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:90,181:0.67:271
chr19	54705619	rs36614	A	G	4613.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr19	54711258	rs2304523	T	G	2020.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:47,89:0.65:136
chr19	54722209	rs58414108	T	C	1700.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:35,70:0.67:105
chr19	54722250	rs1132610	T	C	3003.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:52,129:0.71:181
chr19	54722594	rs3852891	TG	CA	8667.77	.	AC=1;AF=0.500;AN=2;DB;DP=352;JOINED;set=Intersection	GT:AD:AF:DP	0/1:129,220:0.63:349
chr19	54722911	rs76887317	T	C	4142.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:94,176:0.65:270
chr19	54723118	rs78889379	G	C	8800.77	.	AC=1;AF=0.500;AN=2;DB;DP=575;set=Intersection	GT:AD:AF:DP	0/1:209,360:0.63:569
chr19	54723310	rs4806725	T	C	11582.77	.	AC=1;AF=0.500;AN=2;DB;DP=762;MQ=60.01;set=Intersection	GT:AD:AF:DP	0/1:237,506:0.68:743
chr19	54723355	rs255774	A	G	2725.77	.	AC=1;AF=0.500;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	0/1:257,133:0.34:390
chr19	54723621	rs117449986	C	G	915.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:21,40:0.66:61
chr19	54723738	rs255772	G	C	5529.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr19	54723766	rs114574888	A	G	4993.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:44,201:0.82:245
chr19	54723848	rs45596336	C	G	18287.77	.	AC=2;AF=1.00;AN=2;DB;DP=423;MQ=59.74;set=Intersection	GT:AD:AF:DP	1/1:8,414:0.98:422
chr19	54723853	rs201021797	T	TCC	18767.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.012;ClippingRankSum=0.000;DB;DP=428;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.81;MQRankSum=8.524;QD=43.95;ReadPosRankSum=3.684;SOR=0.382;set=HC	GT:AD:AF:DP	1/1:6,421:0.99:427
chr19	54723855	.	C	CCCT	2974	.	AC=1;AF=0.500;AN=2;BRF=0.49;FR=0.5000;HP=1;HapScore=1;MGOF=20;MMLQ=28;MQ=59.76;NF=49;NR=119;PP=2974;QD=20;SC=GCTCCTCCTCCTGGCTGGGCC;SbPval=0.47;Source=Platypus;TC=180;TCF=51;TCR=129;TR=168;WE=54723864;WS=54723838;set=Platypus	GT:AD:AF:DP	0/1:12,168:0.93:180
chr19	54723856	.	T	A	2962	.	AC=1;AF=0.500;AN=2;BRF=0.49;FR=0.5000;HP=2;HapScore=1;MGOF=20;MMLQ=26;MQ=59.83;NF=139;NR=118;PP=2962;QD=20;SC=CTCCTCCTCCTGGCTGGGCCC;SbPval=0.64;Source=Platypus;TC=294;TCF=152;TCR=142;TR=257;WE=54723864;WS=54723838;set=Platypus	GT:AD:AF:DP	0/1:37,257:0.87:294
chr19	54723856	rs202080514	T	TA	19079.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.734;ClippingRankSum=0.000;DB;DP=436;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.82;MQRankSum=8.602;QD=43.86;ReadPosRankSum=3.889;SOR=0.392;set=HC	GT:AD:AF:DP	1/1:6,429:0.99:435
chr19	54724443	rs201735825	G	A	2172.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.258;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=39.706;MLEAC=1;MLEAF=0.500;MQ=46.66;MQRankSum=4.490;QD=17.66;ReadPosRankSum=6.489;SOR=0.005;set=HC	GT:AD:AF:DP	0/1:34,89:0.72:123
chr19	54724457	.	TA	CG	5159.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.952;ClippingRankSum=0.000;DP=173;ExcessHet=3.0103;FS=43.037;JOINED;MLEAC=1;MLEAF=0.500;MQ=43.90;MQRankSum=3.393;QD=30.17;ReadPosRankSum=3.911;SOR=0.004;set=HC	GT:AD:AF:DP	0/1:48,123:0.72:171
chr19	54725745	rs202131060	A	G	107.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=35.76;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr19	54725755	rs373643684	TG	CA	184.90	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=37.95;QD=46.23;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr19	54725798	rs75069054	G	T	270.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.19;QD=27.08;SOR=4.804;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr19	54725835	rs201948566	G	C	781.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.40;QD=32.57;SOR=6.439;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr19	54725913	rs199822090	C	T	1479.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:102,71:0.41:173
chr19	54726162	rs56182917	T	G	1108.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.09;QD=32.61;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr19	54726226	rs75672336	T	C	5598.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.852;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=2.964;MLEAC=2;MLEAF=1.000;MQ=46.14;MQRankSum=1.777;QD=39.15;ReadPosRankSum=2.262;SOR=0.165;set=HC	GT:AD:AF:DP	1/1:2,141:0.99:143
chr19	54726241	rs77279742	C	T	2492.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.212;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=3.411;MLEAC=1;MLEAF=0.500;MQ=46.30;MQRankSum=-2.531;QD=16.29;ReadPosRankSum=-0.866;SOR=1.028;set=HC	GT:AD:AF:DP	0/1:38,115:0.75:153
chr19	54726299	rs80077296	A	C	1505.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.048;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.963;MLEAC=1;MLEAF=0.500;MQ=45.64;MQRankSum=-0.025;QD=16.55;ReadPosRankSum=-1.391;SOR=0.904;set=HC	GT:AD:AF:DP	0/1:20,71:0.78:91
chr19	54726324	rs79304773	G	C	1548.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.92;QD=43.02;SOR=1.371;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr19	54726347	rs76998994	T	A	515.77	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=38.81;QD=57.31;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr19	54726571	.	C	T	62.74	.	AC=2;AF=1.00;AN=2;DP=1;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=62.74;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,1:1.00:1
chr19	54726577	.	C	CT	232.80	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=116.40;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr19	54726581	.	G	A	241.84	.	AC=2;AF=1.00;AN=2;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.84;QD=40.31;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr19	54726586	.	G	T	241.84	.	AC=2;AF=1.00;AN=2;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.84;QD=40.31;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr19	54726587	.	T	G	241.84	.	AC=2;AF=1.00;AN=2;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.84;QD=40.31;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr19	54726630	rs201587814	C	T	243.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.78;QD=27.09;SOR=4.615;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr19	54726665	rs373978777	G	A	926.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.65;QD=31.96;SOR=6.804;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr19	54726701	rs200031404	G	GTCC	2327.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.74;QD=45.64;SOR=4.133;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr19	54726711	rs140063405	G	T	2523.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.99;QD=42.06;SOR=3.334;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr19	54726816	rs80332440	A	T	5482.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:18,220:0.92:238
chr19	54726833	rs149695852	T	C	8448.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.332;ClippingRankSum=0.000;DB;DP=228;ExcessHet=3.0103;FS=0.905;MLEAC=1;MLEAF=0.500;MQ=52.30;MQRankSum=0.836;QD=37.22;ReadPosRankSum=-0.177;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:19,208:0.92:227
chr19	54726839	rs141453251	C	T	8452.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.843;ClippingRankSum=0.000;DB;DP=224;ExcessHet=3.0103;FS=1.798;MLEAC=1;MLEAF=0.500;MQ=52.37;MQRankSum=1.076;QD=37.90;ReadPosRankSum=1.581;SOR=0.800;set=HC	GT:AD:AF:DP	0/1:23,200:0.90:223
chr19	54726843	rs138124247	C	G	8450.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.494;ClippingRankSum=0.000;DB;DP=229;ExcessHet=3.0103;FS=2.864;MLEAC=1;MLEAF=0.500;MQ=52.28;MQRankSum=0.995;QD=37.06;ReadPosRankSum=1.259;SOR=0.856;set=HC	GT:AD:AF:DP	0/1:23,205:0.90:228
chr19	54726861	rs114813697	C	T	4973.90	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:30,213:0.88:243
chr19	54726872	rs140228691	C	G	4361.96	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:26,187:0.88:213
chr19	54742738	rs448461	G	C	1191.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:154,66:0.30:220
chr19	54743517	rs199690478	G	A	472.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.385;ClippingRankSum=0.000;DB;DP=462;ExcessHet=3.0103;FS=17.589;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=-4.912;QD=1.06;ReadPosRankSum=-7.650;SOR=0.855;set=HC	GT:AD:AF:DP	0/1:384,64:0.14:448
chr19	54743747	rs10403230	C	G	3569.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:183,150:0.45:333
chr19	54743758	rs7246746	C	A	1505.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.822;ClippingRankSum=0.000;DB;DP=257;ExcessHet=3.0103;FS=0.752;MLEAC=1;MLEAF=0.500;MQ=50.20;MQRankSum=2.183;QD=5.86;ReadPosRankSum=2.140;SOR=0.821;set=HC	GT:AD:AF:DP	0/1:183,74:0.29:257
chr19	54744209	rs8105096	TA	CG	2085.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.107;ClippingRankSum=0.000;DB;DP=607;ExcessHet=3.0103;FS=0.623;JOINED;MLEAC=1;MLEAF=0.500;MQ=54.36;MQRankSum=-2.274;QD=3.46;ReadPosRankSum=-0.884;SOR=0.802;set=HC	GT:AD:AF:DP	0/1:458,144:0.24:602
chr19	54744357	.	A	ACTGCCACC	465.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.384;ClippingRankSum=0.000;DP=18;ExcessHet=3.0103;FS=8.751;MLEAC=1;MLEAF=0.500;MQ=41.96;MQRankSum=-2.534;QD=31.05;ReadPosRankSum=-2.133;SOR=5.283;set=HC	GT:AD:AF:DP	0/1:2,13:0.87:15
chr19	54745507	rs61734496	TG	CA	1142.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=42.34;QD=43.95;SOR=1.220;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr19	54745550	rs71257443	G	T	684.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.27;QD=31.13;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr19	54745978	.	T	C	2962	.	AC=1;AF=0.500;AN=2;BRF=0.52;FR=0.5000;HP=3;HapScore=1;MGOF=10;MMLQ=24;MQ=44.95;NF=77;NR=31;PP=2962;QD=20;SC=GGTATCTCCCTGCATGGTGCT;SbPval=0.88;Source=Platypus;TC=296;TCF=186;TCR=110;TR=108;WE=54746001;WS=54745968;set=Platypus	GT:AD:AF:DP	1/0:188,108:0.36:296
chr19	54746051	rs620207	A	C	2533.77	.	AC=1;AF=0.500;AN=2;DB;DP=548;set=Intersection	GT:AD:AF:DP	0/1:385,159:0.29:544
chr19	54746081	rs28445220	T	C	4783.77	.	AC=1;AF=0.500;AN=2;DB;DP=555;set=Intersection	GT:AD:AF:DP	0/1:295,255:0.46:550
chr19	54746463	rs139902421	G	T	898.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.706;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=16.512;MLEAC=1;MLEAF=0.500;MQ=46.64;MQRankSum=-0.473;QD=14.98;ReadPosRankSum=-0.556;SOR=2.712;set=HC	GT:AD:AF:DP	0/1:24,36:0.60:60
chr19	54746528	rs75130216	C	T	439.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.421;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=6.244;MLEAC=1;MLEAF=0.500;MQ=52.60;MQRankSum=-4.716;QD=3.12;ReadPosRankSum=2.080;SOR=0.305;set=HC	GT:AD:AF:DP	0/1:105,36:0.26:141
chr19	54754737	rs7256245	G	A	704.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.685;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.58;MQRankSum=0.553;QD=4.67;ReadPosRankSum=0.102;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:106,45:0.30:151
chr19	54754752	rs433291	T	C	4227.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr19	54754820	rs429425	T	G	605.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr19	54755911	rs12977057	C	T	4796.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:38,118:0.76:156
chr19	54755922	rs12977062	CA	TG	5383.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;JOINED;MQ=58.14;set=Intersection	GT:AD:AF:DP	0/1:47,131:0.74:178
chr19	54755962	rs7248556	G	A	1142.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:196,76:0.28:272
chr19	54755994	rs417523	G	A	10463.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.539;ClippingRankSum=0.000;DB;DP=323;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.95;MQRankSum=-0.039;QD=32.40;ReadPosRankSum=-0.183;SOR=0.244;set=HC	GT:AD:AF:DP	1/1:1,322:1.00:323
chr19	54755994	.	GTC	ATA,ATC	2706	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.5;FR=0.5000,0.5000;HP=1;HapScore=1;MGOF=38;MMLQ=22;MQ=59.89;NF=30,103;NR=24,93;PP=508,2706;QD=10.3975532382;SC=CAAGGGGTTCGTCTCCTGGGA;SbPval=0.65;Source=Platypus;TC=198;TCF=104;TCR=94;TR=54,196;WE=54756004;WS=54755984;set=Platypus	GT:AF:DP	0/1:0.27:198
chr19	54755996	rs190628353	C	A	1559.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.289;ClippingRankSum=0.000;DB;DP=325;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.942;QD=4.80;ReadPosRankSum=-0.038;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:226,99:0.30:325
chr19	54756024	rs405443	A	C	4913.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:110,223:0.67:333
chr19	54756141	rs7248598	C	T	579.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:81,37:0.31:118
chr19	54756302	rs415860	A	G	4177.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr19	54756657	rs434755	C	T	13029.77	.	AC=2;AF=1.00;AN=2;DB;DP=495;set=Intersection	GT:AD:AF:DP	1/1:2,480:1.00:482
chr19	54758592	rs73938621	C	T	1316.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.269;ClippingRankSum=0.000;DB;DP=235;ExcessHet=3.0103;FS=1.105;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.73;ReadPosRankSum=-1.728;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:159,71:0.31:230
chr19	54759361	rs12975366	T	C	13239.77	.	AC=1;AF=0.500;AN=2;DB;DP=885;set=Intersection	GT:AD:AF:DP	0/1:290,589:0.67:879
chr19	54778694	rs62134981	G	A	617.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.077;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=4.710;MLEAC=1;MLEAF=0.500;MQ=59.41;MQRankSum=0.615;QD=8.35;ReadPosRankSum=-0.276;SOR=0.331;set=HC	GT:AD:AF:DP	0/1:46,28:0.38:74
chr19	54780012	rs183239618	A	G	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.864;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=26.249;MLEAC=1;MLEAF=0.500;MQ=59.29;MQRankSum=-5.924;QD=0.40;ReadPosRankSum=-2.616;SOR=3.425;set=HC	GT:AD:AF:DP	0/1:74,11:0.13:85
chr19	54780079	rs200850213	T	C	1150.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:128,62:0.33:190
chr19	54780798	.	TG	CA	998.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.058;ClippingRankSum=0.000;DP=185;ExcessHet=3.0103;FS=9.545;JOINED;MLEAC=1;MLEAF=0.500;MQ=47.75;MQRankSum=-7.854;QD=5.49;ReadPosRankSum=-1.125;SOR=0.244;set=HC	GT:AD:AF:DP	0/1:147,35:0.19:182
chr19	54780805	rs189835390	G	A	941.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.346;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=10.245;MLEAC=1;MLEAF=0.500;MQ=47.72;MQRankSum=-8.026;QD=5.57;ReadPosRankSum=-1.868;SOR=0.211;set=HC	GT:AD:AF:DP	0/1:136,33:0.20:169
chr19	54781466	rs3859538	C	G	718.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:73,40:0.35:113
chr19	54781509	rs1808548	C	T	831.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.114;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=0.617;MLEAC=1;MLEAF=0.500;MQ=59.66;MQRankSum=-0.015;QD=4.73;ReadPosRankSum=0.943;SOR=0.771;set=HC	GT:AD:AF:DP	0/1:126,50:0.28:176
chr19	54781843	rs4022330	C	T	622.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:71,34:0.32:105
chr19	54782407	rs1128646	C	T	3719.77	.	AC=1;AF=0.500;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	0/1:240,113:0.32:353
chr19	54782420	rs11666104	G	A	3427.77	.	AC=1;AF=0.500;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:212,99:0.32:311
chr19	54782704	rs7247451	G	C	758.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.722;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=3.018;MLEAC=1;MLEAF=0.500;MQ=58.28;MQRankSum=-6.116;QD=8.82;ReadPosRankSum=-0.107;SOR=1.324;set=HC	GT:AD:AF:DP	0/1:63,23:0.27:86
chr19	54782710	rs7247208	A	G	818.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.473;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=4.725;MLEAC=1;MLEAF=0.500;MQ=58.55;MQRankSum=-5.695;QD=8.62;ReadPosRankSum=-1.043;SOR=1.502;set=HC	GT:AD:AF:DP	0/1:69,26:0.27:95
chr19	54782724	rs7247538	G	A	721.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:91,38:0.29:129
chr19	54783375	rs373032	T	A	3895.77	.	AC=1;AF=0.500;AN=2;DB;DP=665;set=Intersection	GT:AD:AF:DP	0/1:436,221:0.34:657
chr19	54783923	rs366337	A	G	1508.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:168,81:0.33:249
chr19	54786022	rs4112253	G	C	226.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.173;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=5.483;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.15;ReadPosRankSum=-0.480;SOR=1.354;set=HC	GT:AD:AF:DP	0/1:55,17:0.24:72
chr19	54801910	rs3815936	A	G	6328.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.033;ClippingRankSum=0.000;DB;DP=250;ExcessHet=3.0103;FS=1.090;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=0.000;QD=25.94;ReadPosRankSum=0.017;SOR=0.790;set=HC	GT:AD:AF:DP	0/1:85,159:0.65:244
chr19	54801916	rs3815937	A	G	6442.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.305;ClippingRankSum=0.000;DB;DP=269;ExcessHet=3.0103;FS=0.493;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=0.000;QD=24.59;ReadPosRankSum=0.016;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:93,169:0.65:262
chr19	54803504	rs6509862	A	C	4852.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:100,206:0.67:306
chr19	54804167	rs11574606	G	A	1335.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:222,76:0.26:298
chr19	54848741	rs12985462	T	C	259.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:22,13:0.37:35
chr19	54849463	rs12976217	C	T	3358.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:74,149:0.67:223
chr19	54849481	rs7256494	T	G	3370.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:72,151:0.68:223
chr19	54849566	rs2241385	T	C	2005.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:50,87:0.64:137
chr19	54867572	rs7257187	C	T	1193.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:118,67:0.36:185
chr19	54871664	rs74463408	G	C	840.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:66,46:0.41:112
chr19	54876324	rs3745441	T	C	4220.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:82,187:0.70:269
chr19	54926249	rs17516390	T	C	620.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:53,32:0.38:85
chr19	54930822	rs35134302	A	G	516.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:92,33:0.26:125
chr19	54940303	rs3745428	T	A	1419.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr19	54941991	rs148150284	A	C	2117.77	.	AC=1;AF=0.500;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	0/1:245,120:0.33:365
chr19	54962374	rs1035450	A	G	5723.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr19	54962467	rs1035451	G	A	11322.77	.	AC=2;AF=1.00;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	1/1:0,422:1.00:422
chr19	54962579	rs1035452	C	T	5267.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr19	54963813	rs3841263	CCT	C	9367.73	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr19	54964019	rs963352	C	T	2440.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr19	54965527	rs7247170	C	T	777.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr19	54965860	rs3813148	G	A	16236.77	.	AC=2;AF=1.00;AN=2;DB;DP=621;set=Intersection	GT:AD:AF:DP	1/1:0,612:1.00:612
chr19	54965889	rs3813147	G	C	10677.77	.	AC=2;AF=1.00;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	1/1:0,404:1.00:404
chr19	54965907	rs3813146	C	T	8774.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr19	54966579	rs889147	C	G	9501.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:0,360:1.00:360
chr19	54969039	rs75907476	G	A	1871.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:153,98:0.39:251
chr19	54971229	rs3745437	T	C	1869.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr19	54973280	rs10423424	C	G	2225.77	.	AC=1;AF=0.500;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	0/1:222,122:0.35:344
chr19	54973307	rs115799049	C	T	4404.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:110,194:0.64:304
chr19	54973988	rs140013148	GCCT	G	17099.73	.	AC=2;AF=1.00;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	1/1:0,386:1.00:386
chr19	54974318	rs10406453	T	C	9754.77	.	AC=2;AF=1.00;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	1/1:0,369:1.00:369
chr19	54974774	rs1981829	A	T	665.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr19	55009497	rs3865495	A	C	6693.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr19	55014031	rs59342471	C	T	1034.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:102,50:0.33:152
chr19	55014088	rs2042287	C	T	2681.77	.	AC=1;AF=0.500;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	0/1:224,141:0.39:365
chr19	55019045	rs140904924	C	T	502.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:25,22:0.47:47
chr19	55019261	rs61737751	C	T	1214.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:128,63:0.33:191
chr19	55019371	rs61737870	C	G	440.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:35,22:0.39:57
chr19	55019402	rs2277974	A	G	170.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:29,9:0.24:38
chr19	55043810	rs17606773	G	A	1305.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr19	55044228	rs10553990	TTC	T	11290.73	.	AC=2;AF=1.00;AN=2;DB;DP=297;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.22;QD=40.61;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:0,278:1.00:278
chr19	55044241	.	CT	C	589.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.729;ClippingRankSum=0.000;DP=297;ExcessHet=3.0103;FS=0.598;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=-0.960;QD=2.35;ReadPosRankSum=-1.763;SOR=0.630;set=HC	GT:AD:AF:DP	0/1:166,85:0.34:251
chr19	55044387	rs62131628	T	C	2466.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr19	55049049	.	CA	C	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.999;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.72;ReadPosRankSum=-0.411;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:14,8:0.36:22
chr19	55053911	rs7251007	G	C	1379.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr19	55085925	rs61739166	T	G	5681.77	.	AC=1;AF=0.500;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	0/1:141,265:0.65:406
chr19	55086169	rs45479893	A	G	4198.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:136,194:0.59:330
chr19	55087313	rs7249811	T	G	19136.77	.	AC=2;AF=1.00;AN=2;DB;DP=724;set=Intersection	GT:AD:AF:DP	1/1:4,716:0.99:720
chr19	55087702	rs113056067	C	T	659.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.371;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=10.086;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.33;ReadPosRankSum=1.893;SOR=3.180;set=HC	GT:AD:AF:DP	0/1:12,24:0.67:36
chr19	55087711	rs10407899	A	G	1274.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.84;SOR=4.047;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr19	55088977	rs7257319	G	A	1279.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:93,66:0.42:159
chr19	55105666	rs28635090	G	T	10298.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.15;QD=43.82;SOR=0.828;set=HC	GT:AD:AF:DP	1/1:0,235:1.00:235
chr19	55105673	rs28545324	C	T	10144.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.72;QD=44.89;SOR=0.824;set=HC	GT:AD:AF:DP	1/1:0,226:1.00:226
chr19	55105706	rs117371487	C	T	2146.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:74,94:0.56:168
chr19	55105722	rs28524012	G	C	6701.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.55;QD=44.98;SOR=0.945;set=HC	GT:AD:AF:DP	1/1:0,149:1.00:149
chr19	55105727	rs28469702	A	G	6586.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.23;QD=45.11;SOR=0.934;set=HC	GT:AD:AF:DP	1/1:0,146:1.00:146
chr19	55105743	rs1974982	A	G	5799.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr19	55105803	rs10410699	C	A	3368.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr19	55106317	rs10416917	A	G	13635.77	.	AC=2;AF=1.00;AN=2;DB;DP=514;set=Intersection	GT:AD:AF:DP	1/1:0,512:1.00:512
chr19	55106663	rs10417589	A	G	17776.77	.	AC=2;AF=1.00;AN=2;DB;DP=699;set=Intersection	GT:AD:AF:DP	1/1:8,679:0.99:687
chr19	55106773	rs2182092	G	A	7053.77	.	AC=1;AF=0.500;AN=2;DB;DP=512;set=Intersection	GT:AD:AF:DP	0/1:190,311:0.62:501
chr19	55106778	rs10418391	G	A	3522.77	.	AC=1;AF=0.500;AN=2;DB;DP=505;set=Intersection	GT:AD:AF:DP	0/1:308,185:0.38:493
chr19	55106865	rs373854	T	C	6281.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr19	55107216	rs61739247	T	C	6610.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.160;ClippingRankSum=0.000;DB;DP=253;ExcessHet=3.0103;FS=2.975;MLEAC=1;MLEAF=0.500;MQ=59.07;MQRankSum=-2.056;QD=26.34;ReadPosRankSum=0.680;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:84,167:0.67:251
chr19	55107223	rs150508449	G	T	6635.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.441;ClippingRankSum=0.000;DB;DP=243;ExcessHet=3.0103;FS=3.040;MLEAC=1;MLEAF=0.500;MQ=58.85;MQRankSum=-1.906;QD=27.53;ReadPosRankSum=1.549;SOR=0.829;set=HC	GT:AD:AF:DP	0/1:82,159:0.66:241
chr19	55107225	rs139787611	A	G	6527.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.248;ClippingRankSum=0.000;DB;DP=242;ExcessHet=3.0103;FS=3.095;MLEAC=1;MLEAF=0.500;MQ=58.69;MQRankSum=-2.087;QD=27.20;ReadPosRankSum=0.503;SOR=0.839;set=HC	GT:AD:AF:DP	0/1:78,162:0.68:240
chr19	55107227	rs141540590	A	G	6539.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.864;ClippingRankSum=0.000;DB;DP=239;ExcessHet=3.0103;FS=3.124;MLEAC=1;MLEAF=0.500;MQ=58.67;MQRankSum=-2.042;QD=27.59;ReadPosRankSum=0.113;SOR=0.824;set=HC	GT:AD:AF:DP	0/1:76,161:0.68:237
chr19	55107308	rs35534776	G	C	3852.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=52.15;QD=42.34;SOR=1.688;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr19	55107313	rs36029771	T	C	3737.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.09;QD=45.58;SOR=2.084;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr19	55107336	rs34058364	C	T	2411.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.11;QD=44.66;SOR=3.098;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr19	55107343	rs10425981	T	C	2312.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.72;QD=43.64;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr19	55107354	rs61739190	C	G	2113.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.28;QD=43.14;SOR=2.880;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr19	55107629	rs28516458	T	C	1796.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:196,90:0.31:286
chr19	55107854	rs116973751	G	T	7069.77	.	AC=1;AF=0.500;AN=2;DB;DP=485;set=Intersection	GT:AD:AF:DP	0/1:179,302:0.63:481
chr19	55110773	rs45541031	G	A	1381.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:24,60:0.71:84
chr19	55112296	rs74905518	G	A	9820.77	.	AC=1;AF=0.500;AN=2;DB;DP=745;set=Intersection	GT:AD:AF:DP	0/1:271,469:0.63:740
chr19	55142101	rs3760861	G	A	1603.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.561;ClippingRankSum=0.000;DB;DP=332;ExcessHet=3.0103;FS=0.932;MLEAC=1;MLEAF=0.500;MQ=59.79;MQRankSum=1.893;QD=5.03;ReadPosRankSum=-0.481;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:222,97:0.30:319
chr19	55142300	rs2781771	A	G	4520.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:98,197:0.67:295
chr19	55142930	rs3843752	C	T	875.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:88,46:0.34:134
chr19	55143083	rs1061679	T	C	2625.77	.	AC=1;AF=0.500;AN=2;DB;DP=483;set=Intersection	GT:AD:AF:DP	0/1:322,147:0.31:469
chr19	55143491	rs1061681	G	T	10095.77	.	AC=1;AF=0.500;AN=2;DB;DP=708;set=Intersection	GT:AD:AF:DP	0/1:236,463:0.66:699
chr19	55143982	rs10427127	T	C	4419.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:111,198:0.64:309
chr19	55144100	rs61737891	A	G	2271.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:65,100:0.61:165
chr19	55144623	rs61739171	C	T	8575.77	.	AC=1;AF=0.500;AN=2;DB;DP=567;set=Intersection	GT:AD:AF:DP	0/1:185,375:0.67:560
chr19	55144684	rs61739244	G	A	6170.77	.	AC=1;AF=0.500;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	0/1:184,266:0.59:450
chr19	55144710	rs61739175	AG	TC	8730.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.755;ClippingRankSum=0.000;DB;DP=382;ExcessHet=3.0103;FS=1.239;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.71;MQRankSum=-5.001;QD=22.98;ReadPosRankSum=-1.720;SOR=0.781;set=HC	GT:AD:AF:DP	0/1:159,221:0.58:380
chr19	55144720	rs61739180	A	C	8136.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.979;ClippingRankSum=0.000;DB;DP=358;ExcessHet=3.0103;FS=3.477;MLEAC=1;MLEAF=0.500;MQ=59.69;MQRankSum=-5.150;QD=22.79;ReadPosRankSum=-1.378;SOR=0.875;set=HC	GT:AD:AF:DP	0/1:154,203:0.57:357
chr19	55145093	rs2114511	G	C	8385.77	.	AC=1;AF=0.500;AN=2;DB;DP=605;set=Intersection	GT:AD:AF:DP	0/1:227,376:0.62:603
chr19	55145454	rs1138736	G	A	1389.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:40,71:0.64:111
chr19	55145481	rs2081658	C	G	1548.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:54,69:0.56:123
chr19	55145546	rs2098952	T	G	960.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:62,43:0.41:105
chr19	55145566	rs117460180	A	G	692.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:48,30:0.38:78
chr19	55145587	rs2098953	T	C	577.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:37,25:0.40:62
chr19	55146036	rs10414552	C	T	1396.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:44,58:0.57:102
chr19	55146070	rs10414578	C	T	2842.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.662;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=1.597;MLEAC=1;MLEAF=0.500;MQ=45.91;MQRankSum=-6.709;QD=21.54;ReadPosRankSum=0.382;SOR=0.868;set=HC	GT:AD:AF:DP	0/1:60,72:0.55:132
chr19	55146076	rs10414581	CA	TG	3018.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.152;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=1.659;JOINED;MLEAC=1;MLEAF=0.500;MQ=45.46;MQRankSum=-7.327;QD=21.88;ReadPosRankSum=-0.330;SOR=0.933;set=HC	GT:AD:AF:DP	0/1:61,77:0.56:138
chr19	55146139	rs1061683	A	G	3262.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:134,153:0.53:287
chr19	55146462	rs67481620	GT	G	1650.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr19	55146469	rs62133428	G	A	1708.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr19	55146565	rs10416070	G	A	510.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.723;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=35.602;MLEAC=1;MLEAF=0.500;MQ=44.86;MQRankSum=-0.969;QD=11.35;ReadPosRankSum=1.234;SOR=2.572;set=HC	GT:AD:AF:DP	0/1:24,21:0.47:45
chr19	55146803	rs10416183	C	T	937.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:11,38:0.78:49
chr19	55146824	rs10421766	G	A	1620.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.51;QD=33.77;SOR=1.298;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr19	55146824	.	GCT	ACC,ACT	567	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.18;FR=0.5000,0.5000;HP=2;HapScore=2;MGOF=32;MMLQ=24;MQ=56.96;NF=9,26;NR=1,16;PP=148,567;QD=20.1467874862;SC=GGAAAGGGGCGCTGGCTGGAA;SbPval=0.99;Source=Platypus;TC=45;TCF=27;TCR=18;TR=10,42;WE=55146834;WS=55146814;set=Platypus	GT:AF:DP	0/1:0.22:45
chr19	55146826	.	T	C	273.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.632;ClippingRankSum=0.000;DP=48;ExcessHet=3.0103;FS=13.068;MLEAC=1;MLEAF=0.500;MQ=57.83;MQRankSum=-2.493;QD=5.70;ReadPosRankSum=-0.490;SOR=2.775;set=HC	GT:AD:AF:DP	0/1:34,14:0.29:48
chr19	55146853	rs10422981	T	C	1759.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:2,60:0.97:62
chr19	55147071	rs10421688	A	G	6245.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.72;QD=33.94;SOR=1.042;set=HC	GT:AD:AF:DP	1/1:0,184:1.00:184
chr19	55147071	.	ACCC	GCCC,GCCT	1242	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.4;FR=0.5000,0.5000;HP=8;HapScore=1;MGOF=0;MMLQ=24;MQ=58.55;NF=53,21;NR=78,28;PP=1242,631;QD=9.74634513395;SC=GTGAGACCCCACCCCTGTCCC;SbPval=0.53;Source=Platypus;TC=131;TCF=53;TCR=78;TR=131,49;WE=55147082;WS=55147061;set=Platypus	GT:AF:DP	0/1:1.00:131
chr19	55147074	rs10421874	C	T	1395.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.477;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=0.563;MLEAC=1;MLEAF=0.500;MQ=58.69;MQRankSum=0.946;QD=7.75;ReadPosRankSum=-0.029;SOR=0.623;set=HC	GT:AD:AF:DP	0/1:107,73:0.41:180
chr19	55147445	rs1808512	G	C	956.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:23,45:0.66:68
chr19	55147504	rs35869117	T	C	591.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.925;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=1.047;MLEAC=1;MLEAF=0.500;MQ=54.44;MQRankSum=-5.738;QD=7.59;ReadPosRankSum=-0.891;SOR=0.902;set=HC	GT:AD:AF:DP	0/1:59,19:0.24:78
chr19	55147508	.	G	A	600.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.834;ClippingRankSum=0.000;DP=74;ExcessHet=3.0103;FS=2.348;MLEAC=1;MLEAF=0.500;MQ=54.58;MQRankSum=-6.128;QD=8.12;ReadPosRankSum=-1.128;SOR=1.013;set=HC	GT:AD:AF:DP	0/1:56,18:0.24:74
chr19	55147509	rs113420280	C	T	2211.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:2,72:0.97:74
chr19	55147542	rs117649119	A	C	918.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:11,39:0.78:50
chr19	55147548	rs2363873	A	G	106.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:38,8:0.17:46
chr19	55147593	rs188732935	G	A	209.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:9,9:0.50:18
chr19	55147634	rs75923984	C	T	172.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.068;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.99;MQRankSum=1.006;QD=24.68;ReadPosRankSum=1.204;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr19	55147635	rs78979983	A	G	317.78	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.99;QD=45.40;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr19	55147639	rs62133430	T	G	331.77	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.06;QD=55.29;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr19	55147643	rs55960610	G	C	358.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.37;QD=44.85;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr19	55147647	.	A	G	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.090;ClippingRankSum=-0.000;DP=8;ExcessHet=3.0103;FS=3.332;MLEAC=1;MLEAF=0.500;MQ=55.37;MQRankSum=-2.100;QD=4.72;ReadPosRankSum=0.792;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:6,2:0.25:8
chr19	55147648	.	C	T	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.100;ClippingRankSum=-0.000;DP=8;ExcessHet=3.0103;FS=3.332;MLEAC=1;MLEAF=0.500;MQ=55.37;MQRankSum=-2.100;QD=4.72;ReadPosRankSum=0.921;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:6,2:0.25:8
chr19	55148176	.	G	A	817.77	.	AC=1;AF=0.500;AN=2;DP=57;set=Intersection	GT:AD:AF:DP	0/1:20,37:0.65:57
chr19	55148242	rs1061684	C	T	3218.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:86,148:0.63:234
chr19	55148299	rs41548213	C	A	5909.77	.	AC=1;AF=0.500;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	0/1:160,267:0.63:427
chr19	55148331	rs8101240	C	T	11669.77	.	AC=2;AF=1.00;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	1/1:2,430:1.00:432
chr19	55148378	rs8101469	G	A	3561.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:182,105:0.37:287
chr19	55148390	rs8101262	C	A	3302.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:160,88:0.35:248
chr19	55174498	rs28366008	T	C	4763.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:97,208:0.68:305
chr19	55175596	rs3050015	T	TGTGGGAG	14380.73	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr19	55175740	rs3745871	C	T	10134.77	.	AC=1;AF=0.500;AN=2;DB;DP=654;set=Intersection	GT:AD:AF:DP	0/1:213,434:0.67:647
chr19	55176262	rs731170	A	G	6819.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr19	55176535	rs1925241	C	T	1297.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:22,57:0.72:79
chr19	55176702	rs1631746	A	C	659.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.254;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.78;MQRankSum=-1.849;QD=6.22;ReadPosRankSum=0.547;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:67,39:0.37:106
chr19	55178035	rs1749317	A	G	2042.77	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:202,118:0.37:320
chr19	55239129	rs144626680	G	A	877.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.47;QD=26.60;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr19	55246731	rs77241525	C	A	7071.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr19	55246909	rs62132700	G	A	2802.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.83;QD=43.79;SOR=2.231;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr19	55246909	.	GCA	ACT	2723	.	AC=2;AF=1.00;AN=2;BRF=0.28;FR=1.0000;HP=1;HapScore=1;MGOF=1;MMLQ=28;MQ=56.63;NF=10;NR=43;PP=2723;QD=20;SC=TTCCTCACAGGCAGGATGGTC;SbPval=0.6;Source=Platypus;TC=55;TCF=11;TCR=44;TR=53;WE=55246919;WS=55246899;set=Platypus	GT:AD:AF:DP	1/1:2,53:0.96:55
chr19	55246911	rs62132701	A	T	2802.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.08;QD=45.21;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr19	55258778	rs34843749	G	A	2480.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr19	55258808	rs35861855	C	T	5178.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr19	55266447	rs2916031	A	G	176.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.32;QD=25.26;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr19	55266496	rs28715756	A	G	1668.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.051;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.04;MQRankSum=-0.276;QD=24.54;ReadPosRankSum=0.531;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:2,66:0.97:68
chr19	55278630	rs2915996	G	C	14853.77	.	AC=2;AF=1.00;AN=2;DB;DP=532;set=Intersection	GT:AD:AF:DP	1/1:5,521:0.99:526
chr19	55281231	.	G	T	369.77	.	AC=1;AF=0.500;AN=2;DP=77;set=Intersection	GT:AD:AF:DP	0/1:53,23:0.30:76
chr19	55281315	rs2304224	G	T	4389.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:3,163:0.98:166
chr19	55284824	rs139078925	G	C	74.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=24.76;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr19	55284858	rs116929762	G	A	703.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.04;QD=31.99;SOR=6.273;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr19	55294927	.	A	G	4242.77	.	AC=2;AF=1.00;AN=2;DP=174;set=Intersection	GT:AD:AF:DP	1/1:1,168:0.99:169
chr19	55315307	rs112963206	C	G	593.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.95;MQRankSum=-4.374;QD=14.84;ReadPosRankSum=0.629;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:10,30:0.75:40
chr19	55317524	rs374413343	G	A	215.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=30.83;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr19	55328105	.	A	AAGTGGAGATCTGGGCCTGG	1126.90	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.447;ClippingRankSum=0.000;DP=76;ExcessHet=3.0103;FS=4.102;MLEAC=1;MLEAF=0.500;MQ=49.36;MQRankSum=1.098;QD=40.25;ReadPosRankSum=-0.840;SOR=2.670;set=HC	GT:AD:AF:DP	0/1:2,26:0.93:28
chr19	55328959	rs149236621	G	T	938.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.49;QD=29.34;SOR=1.911;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr19	55329854	rs144994606	G	A	7718.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:30,320:0.91:350
chr19	55329892	rs149123986	A	G	8948.77	.	AC=1;AF=0.500;AN=2;DB;DP=448;set=Intersection	GT:AD:AF:DP	0/1:47,395:0.89:442
chr19	55329922	rs1049150	A	T	93.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.446;ClippingRankSum=0.000;DB;DP=496;ExcessHet=3.0103;FS=15.764;MLEAC=1;MLEAF=0.500;MQ=57.92;MQRankSum=-16.893;QD=0.19;ReadPosRankSum=-0.021;SOR=1.928;set=HC	GT:AD:AF:DP	0/1:433,60:0.12:493
chr19	55330019	rs143159382	C	T	4261.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:78,188:0.71:266
chr19	55331419	rs143886704	C	T	4606.77	.	AC=1;AF=0.500;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	0/1:195,214:0.52:409
chr19	55331574	rs150226565	T	C	267.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.070;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=40.29;MQRankSum=1.077;QD=10.30;ReadPosRankSum=2.038;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:13,13:0.50:26
chr19	55333246	rs146719656	C	T	106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.534;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=40.00;MQRankSum=-0.000;QD=13.35;ReadPosRankSum=-0.921;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:3,5:0.62:8
chr19	55333275	rs150084719	G	T	46.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=40.00;MQRankSum=-0.000;QD=7.79;ReadPosRankSum=0.385;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:3,3:0.50:6
chr19	55336624	rs200314651	G	T	95.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.504;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=3.637;MLEAC=1;MLEAF=0.500;MQ=42.98;MQRankSum=0.953;QD=3.09;ReadPosRankSum=-0.252;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:22,9:0.29:31
chr19	55340835	rs45459293	C	T	10234.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.305;ClippingRankSum=0.000;DB;DP=458;ExcessHet=3.0103;FS=0.529;MLEAC=1;MLEAF=0.500;MQ=56.80;MQRankSum=-11.619;QD=22.49;ReadPosRankSum=2.132;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:193,262:0.58:455
chr19	55340836	rs45551936	A	G	16822.77	.	AC=2;AF=1.00;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	1/1:0,454:1.00:454
chr19	55340841	rs150471749	G	C	10210.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.551;ClippingRankSum=0.000;DB;DP=451;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.75;MQRankSum=-11.555;QD=22.74;ReadPosRankSum=2.650;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:189,260:0.58:449
chr19	55340906	rs45542639	G	A	4837.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:139,222:0.61:361
chr19	55340933	rs62124154	G	C	7226.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr19	55341027	rs45580236	A	G	4125.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.35;QD=42.98;SOR=2.786;set=HC	GT:AD:AF:DP	1/1:0,96:1.00:96
chr19	55341031	rs45566438	G	C	4008.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.28;QD=46.08;SOR=2.941;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr19	55341575	rs1130513	G	C	26443.77	.	AC=2;AF=1.00;AN=2;DB;DP=816;set=Intersection	GT:AD:AF:DP	1/1:2,799:1.00:801
chr19	55341589	rs112943025	C	T	4805.77	.	AC=1;AF=0.500;AN=2;DB;DP=889;set=Intersection	GT:AD:AF:DP	0/1:594,278:0.32:872
chr19	55341753	rs12985492	A	G	17090.77	.	AC=2;AF=1.00;AN=2;DB;DP=632;set=Intersection	GT:AD:AF:DP	1/1:5,616:0.99:621
chr19	55344340	.	A	ATGGGCCTGGAGTGGAGATC	2224.73	.	AC=2;AF=1.00;AN=2;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.33;QD=44.49;SOR=3.171;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr19	55344381	rs184639014	G	T	165.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.171;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=5.798;MLEAC=1;MLEAF=0.500;MQ=59.33;MQRankSum=-0.845;QD=6.38;ReadPosRankSum=-1.942;SOR=2.621;set=HC	GT:AD:AF:DP	0/1:17,9:0.35:26
chr19	55344382	rs12151085	A	G	859.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr19	55346409	rs4806584	T	A	2896.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr19	55346629	rs139958085	C	T	886.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:23,39:0.63:62
chr19	55346631	rs112892367	G	A	469.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:38,23:0.38:61
chr19	55349264	rs115093949	G	A	2631.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.335;ClippingRankSum=0.000;DB;DP=537;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.71;MQRankSum=-2.867;QD=4.93;ReadPosRankSum=0.162;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:377,157:0.29:534
chr19	55350948	rs4806589	A	T	2428.77	.	AC=1;AF=0.500;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	0/1:285,136:0.32:421
chr19	55350979	rs4806590	A	G	11812.77	.	AC=2;AF=1.00;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	1/1:4,434:0.99:438
chr19	55351022	rs4806591	A	C	2755.77	.	AC=1;AF=0.500;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	0/1:297,142:0.32:439
chr19	55363504	rs201009466	G	A	60.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.50;MQRankSum=-0.674;QD=15.20;ReadPosRankSum=0.674;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr19	55363719	rs3188286	C	G	1352.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.727;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=2.711;MLEAC=1;MLEAF=0.500;MQ=47.21;MQRankSum=-3.689;QD=13.13;ReadPosRankSum=-0.863;SOR=0.437;set=HC	GT:AD:AF:DP	0/1:38,65:0.63:103
chr19	55365527	rs201670003	A	G	76.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.62;QD=19.01;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr19	55377211	rs3826878	A	G	1994.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:176,102:0.37:278
chr19	55377813	rs61420363	C	T	1035.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:108,53:0.33:161
chr19	55378083	rs58413124	T	C	7247.77	.	AC=1;AF=0.500;AN=2;DB;DP=961;set=Intersection	GT:AD:AF:DP	0/1:573,369:0.39:942
chr19	55378223	rs2915990	A	C	3404.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.363;ClippingRankSum=0.000;DB;DP=245;ExcessHet=3.0103;FS=1.890;MLEAC=1;MLEAF=0.500;MQ=58.57;MQRankSum=-5.530;QD=14.55;ReadPosRankSum=0.843;SOR=0.852;set=HC	GT:AD:AF:DP	0/1:140,94:0.40:234
chr19	55378227	rs57997455	A	C	3321.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.672;ClippingRankSum=0.000;DB;DP=232;ExcessHet=3.0103;FS=2.756;MLEAC=1;MLEAF=0.500;MQ=58.49;MQRankSum=-5.603;QD=14.96;ReadPosRankSum=0.362;SOR=0.919;set=HC	GT:AD:AF:DP	0/1:134,88:0.40:222
chr19	55378255	rs2915991	A	G	1767.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.919;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=4.284;MLEAC=1;MLEAF=0.500;MQ=57.79;MQRankSum=-6.111;QD=11.94;ReadPosRankSum=-1.764;SOR=1.241;set=HC	GT:AD:AF:DP	0/1:96,52:0.35:148
chr19	55378263	rs60384117	G	T	1596.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.400;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=3.253;MLEAC=1;MLEAF=0.500;MQ=57.49;MQRankSum=-6.234;QD=12.28;ReadPosRankSum=-2.707;SOR=1.074;set=HC	GT:AD:AF:DP	0/1:85,45:0.35:130
chr19	55378274	rs57766694	G	C	1122.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.919;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=8.405;MLEAC=1;MLEAF=0.500;MQ=57.12;MQRankSum=-7.418;QD=10.40;ReadPosRankSum=-1.411;SOR=1.923;set=HC	GT:AD:AF:DP	0/1:78,30:0.28:108
chr19	55378277	rs57945910	C	T	999.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.372;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=4.650;MLEAC=1;MLEAF=0.500;MQ=56.92;MQRankSum=-7.661;QD=9.90;ReadPosRankSum=-1.252;SOR=1.575;set=HC	GT:AD:AF:DP	0/1:74,27:0.27:101
chr19	55378295	rs58983092	G	T	546.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:60,18:0.23:78
chr19	55386858	rs77887839	C	G	317.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:54,21:0.28:75
chr19	55386890	rs11084377	A	G	1598.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr19	55386920	rs8112766	A	G	1304.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr19	55396613	rs10402324	G	A	814.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:20,32:0.62:52
chr19	55396900	rs1865096	A	G	4697.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr19	55399311	rs7258679	G	T	465.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.635;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=1.217;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.05;ReadPosRankSum=1.168;SOR=0.436;set=HC	GT:AD:AF:DP	0/1:61,16:0.21:77
chr19	55399314	rs74672836	G	T	495.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.040;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.97;ReadPosRankSum=0.819;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:65,18:0.22:83
chr19	55399643	rs61735069	T	C	1651.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:162,86:0.35:248
chr19	55399684	rs79401710	C	T	967.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:107,50:0.32:157
chr19	55400971	rs77273876	G	A	716.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:72,37:0.34:109
chr19	55417469	rs4806621	A	G	779.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:50,40:0.44:90
chr19	55420801	rs3765013	C	A	2081.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.378;ClippingRankSum=0.000;DB;DP=497;ExcessHet=3.0103;FS=0.593;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.26;ReadPosRankSum=1.717;SOR=0.581;set=HC	GT:AD:AF:DP	0/1:356,133:0.27:489
chr19	55438940	.	AAAAC	A	5620.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.549;ClippingRankSum=0.000;DP=245;ExcessHet=3.0103;FS=1.038;MLEAC=1;MLEAF=0.500;MQ=60.53;MQRankSum=2.838;QD=23.32;ReadPosRankSum=0.983;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:94,147:0.61:241
chr19	55439166	rs269933	T	C	998.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:20,37:0.65:57
chr19	55439197	rs269934	A	C	483.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:11,22:0.67:33
chr19	55441769	rs269949	G	A	670.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:7,27:0.79:34
chr19	55441902	rs269950	T	C	3301.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:55,148:0.73:203
chr19	55441995	rs269951	A	G	2465.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:49,110:0.69:159
chr19	55445174	rs269957	T	C	3365.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:57,150:0.72:207
chr19	55446084	.	C	CT	53.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.719;ClippingRankSum=0.000;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.36;ReadPosRankSum=-1.449;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:10,6:0.38:16
chr19	55452194	.	C	CA	192.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.190;ClippingRankSum=0.000;DP=85;ExcessHet=3.0103;FS=6.995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.47;ReadPosRankSum=0.812;SOR=1.795;set=HC	GT:AD:AF:DP	0/1:55,23:0.29:78
chr19	55452749	.	CAA	C	147.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.202;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.91;ReadPosRankSum=-0.537;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:14,11:0.44:25
chr19	55481343	rs192055098	C	T	434.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:5,19:0.79:24
chr19	55481398	rs269912	G	A	966.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:15,39:0.72:54
chr19	55481669	rs269913	TG	CA	5569.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;JOINED;set=Intersection	GT:AD:AF:DP	0/1:110,142:0.56:252
chr19	55481724	rs373104723	T	C	1630.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:49,66:0.57:115
chr19	55481772	rs368196289	C	A	511.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:24,22:0.48:46
chr19	55488180	.	CT	C	322.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.593;ClippingRankSum=0.000;DP=230;ExcessHet=3.0103;FS=5.307;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=2.138;QD=1.84;ReadPosRankSum=-1.155;SOR=1.295;set=HC	GT:AD:AF:DP	0/1:116,59:0.34:175
chr19	55493687	rs139279089	C	T	3055.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:82,136:0.62:218
chr19	55501348	rs71269532	C	CA	212.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.829;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=0.000;QD=3.49;ReadPosRankSum=0.488;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:37,24:0.39:61
chr19	55501579	rs1654495	A	C	3521.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:101,154:0.60:255
chr19	55501834	rs1654496	C	A	2744.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:65,119:0.65:184
chr19	55505557	rs1654504	C	T	493.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:5,20:0.80:25
chr19	55511959	rs201601078	TTAA	T	680.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.653;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.92;ReadPosRankSum=-1.624;SOR=0.933;set=HC	GT:AD:AF:DP	0/1:46,40:0.47:86
chr19	55512011	rs16986158	A	C	3948.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:74,167:0.69:241
chr19	55512137	rs12768	C	A	7651.77	.	AC=1;AF=0.500;AN=2;DB;DP=558;set=Intersection	GT:AD:AF:DP	0/1:212,338:0.61:550
chr19	55512232	rs1043673	C	A	4773.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:147,204:0.58:351
chr19	55512316	rs1043678	T	G	1769.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:65,74:0.53:139
chr19	55512347	rs1043680	G	C	1291.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:30,57:0.66:87
chr19	55525337	rs10417943	G	A	182.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:39,16:0.29:55
chr19	55525388	rs10417981	G	T	1676.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.881;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=2.748;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.24;ReadPosRankSum=0.226;SOR=0.468;set=HC	GT:AD:AF:DP	0/1:31,79:0.72:110
chr19	55525497	rs1671150	A	G	1482.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:37,64:0.63:101
chr19	55525596	rs1654412	T	C	1145.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:22,49:0.69:71
chr19	55525894	rs1671151	G	A	4599.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:113,202:0.64:315
chr19	55526103	rs138680589	G	GCAGA	3675.73	.	AC=1;AF=0.500;AN=2;DB;DP=594;MQ=60.04;set=Intersection	GT:AD:AF:DP	0/1:322,190:0.37:512
chr19	55526345	rs1671152	T	G	14476.77	.	AC=2;AF=1.00;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	1/1:0,386:1.00:386
chr19	55526359	rs1654413	A	T	8959.77	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:99,231:0.70:330
chr19	55526373	rs2304166	G	C	8681.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:99,221:0.69:320
chr19	55527081	rs2304167	C	T	3679.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:67,163:0.71:230
chr19	55527189	rs1671153	G	T	3909.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:62,173:0.74:235
chr19	55527233	rs2019599	C	T	689.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:82,40:0.33:122
chr19	55527276	rs1654484	T	C	878.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:22,34:0.61:56
chr19	55529836	rs1654415	C	T	314.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:4,12:0.75:16
chr19	55529933	rs1671192	A	G	2088.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:27,81:0.75:108
chr19	55530035	rs1654416	C	T	4028.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:94,180:0.66:274
chr19	55536595	rs1613662	G	A	4193.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr19	55538980	rs1654425	T	C	4714.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr19	55539061	rs892089	A	G	4749.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:108,207:0.66:315
chr19	55539072	rs892090	T	G	8978.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:0,340:1.00:340
chr19	55543834	rs2288905	C	T	1572.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:156,86:0.36:242
chr19	55549386	rs17836542	C	G	808.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:57,38:0.40:95
chr19	55559715	rs2305543	G	A	5018.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:91,212:0.70:303
chr19	55567979	rs12608988	G	A	902.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:112,52:0.32:164
chr19	55568084	rs12608979	CG	TT	3179.77	.	AC=1;AF=0.500;AN=2;DB;DP=344;JOINED;set=Intersection	GT:AD:AF:DP	0/1:245,95:0.28:340
chr19	55570574	rs1654447	A	G	5132.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr19	55574412	rs1654456	G	T	1713.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:21,52:0.71:73
chr19	55574429	rs113253419	A	AGGCGTCC,AGGCGTCAGGCGTCC	2166.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=61;set=Intersection	GT:AF:DP	1/2:0.68,0.28:57
chr19	55574512	rs3816043	G	A	507.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:7,25:0.78:32
chr19	55589544	rs10411094	G	A	4350.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr19	55589619	rs12984354	T	G	984.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.918;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=16.435;MLEAC=1;MLEAF=0.500;MQ=56.81;MQRankSum=4.186;QD=31.77;ReadPosRankSum=-1.799;SOR=1.295;set=HC	GT:AD:AF:DP	0/1:4,27:0.87:31
chr19	55589628	rs12984365	T	G	840.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.089;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=15.079;MLEAC=1;MLEAF=0.500;MQ=55.93;MQRankSum=3.667;QD=35.03;ReadPosRankSum=-2.773;SOR=1.132;set=HC	GT:AD:AF:DP	0/1:4,20:0.83:24
chr19	55589646	rs74967744	A	G	50.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.587;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=6.107;MLEAC=1;MLEAF=0.500;MQ=54.05;MQRankSum=-2.862;QD=2.82;ReadPosRankSum=2.101;SOR=2.780;set=HC	GT:AD:AF:DP	0/1:14,4:0.22:18
chr19	55597369	rs2290476	G	C	10378.77	.	AC=2;AF=1.00;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	1/1:2,401:1.00:403
chr19	55598003	rs3217645	G	GC	1758.73	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:1,61:0.98:62
chr19	55603388	rs10410929	T	C	5764.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr19	55605658	rs370611782	GCCCCAGCCCCTCCTCCCTCAGACCCAGGAGTCCAGA	G,GCCCCCAGCCCCTCCTCCCTCAGACCCAGGAGTCCAGA	4266.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=117;set=Intersection	GT:AF:DP	1/1:1.00:115
chr19	55644325	rs890868	A	C	5484.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr19	55646893	rs75925120	CT	C	42.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.358;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.03;ReadPosRankSum=-0.372;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:10,11:0.52:21
chr19	55658088	rs11669534	G	A	2214.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr19	55660427	rs147570848	C	G	13486.77	.	AC=1;AF=0.500;AN=2;DB;DP=726;set=Intersection	GT:AD:AF:DP	0/1:146,578:0.80:724
chr19	55660499	rs28362592	A	G	1884.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.626;ClippingRankSum=0.000;DB;DP=754;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.52;ReadPosRankSum=-0.008;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:595,152:0.20:747
chr19	55660537	rs9636153	T	C	16229.77	.	AC=2;AF=1.00;AN=2;DB;DP=618;set=Intersection	GT:AD:AF:DP	1/1:0,614:1.00:614
chr19	55665584	rs7252610	A	C	5252.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr19	55671337	rs890872	C	T	4786.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.83;SOR=1.165;set=HC	GT:AD:AF:DP	1/1:0,172:1.00:172
chr19	55690751	rs11672000	A	G	139.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:16,7:0.30:23
chr19	55693286	rs45607834	C	T	1298.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:137,73:0.35:210
chr19	55697279	rs61734259	C	T	1579.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:209,95:0.31:304
chr19	55697752	rs148069644	AG	A	5703.73	.	AC=1;AF=0.500;AN=2;DB;DP=494;set=Intersection	GT:AD:AF:DP	0/1:322,159:0.33:481
chr19	55697766	rs77296713	T	A	6027.77	.	AC=1;AF=0.500;AN=2;DB;DP=528;set=Intersection	GT:AD:AF:DP	0/1:346,179:0.34:525
chr19	55697795	rs111326663	G	C	3520.77	.	AC=1;AF=0.500;AN=2;DB;DP=590;set=Intersection	GT:AD:AF:DP	0/1:400,190:0.32:590
chr19	55697889	rs1136578	G	A	2555.77	.	AC=1;AF=0.500;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	0/1:248,135:0.35:383
chr19	55699406	rs200823688	C	A	1964.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.074;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=2.039;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.97;ReadPosRankSum=1.981;SOR=1.096;set=HC	GT:AD:AF:DP	0/1:39,84:0.68:123
chr19	55699454	rs890870	T	C	6756.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr19	55699575	rs3803905	T	C	1014.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:149,60:0.29:209
chr19	55708557	rs2288521	A	G	2856.77	.	AC=1;AF=0.500;AN=2;DB;DP=538;set=Intersection	GT:AD:AF:DP	0/1:369,167:0.31:536
chr19	55708573	rs2288520	G	A	2897.77	.	AC=1;AF=0.500;AN=2;DB;DP=595;set=Intersection	GT:AD:AF:DP	0/1:415,177:0.30:592
chr19	55716800	rs2288516	A	G	12782.77	.	AC=2;AF=1.00;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	1/1:2,450:1.00:452
chr19	55738425	rs3745919	G	A	531.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr19	55738634	rs4644955	T	C	4089.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr19	55739515	rs4255895	T	C	1135.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr19	55739689	rs10413828	G	A	8504.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr19	55751123	rs8104509	G	A	3185.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr19	55751714	rs201964308	CAT	C	2800.73	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:37,72:0.66:109
chr19	55758628	rs7258327	C	T	3743.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr19	55785715	rs11427517	A	AC	81.73	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:3,5:0.62:8
chr19	55790886	rs10701478	A	AGCCGCCGCC	7484.73	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr19	55791091	rs62126354	C	T	7294.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:2,274:0.99:276
chr19	55795758	rs201695409	A	AC	447.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr19	55800789	rs62126358	C	G	3001.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr19	55801084	rs141332482	G	C	549.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:75,33:0.31:108
chr19	55815894	rs1172820	T	C	526.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:85,33:0.28:118
chr19	55816678	rs1172821	C	T	623.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:99,34:0.26:133
chr19	55831576	rs897794	AA	CC	2379.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;JOINED;set=Intersection	GT:AD:AF:DP	0/1:136,68:0.33:204
chr19	55831589	rs897796	A	G	1186.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:112,59:0.35:171
chr19	55831723	rs897797	T	G	3681.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr19	55832427	rs10412726	T	G	11136.73	.	AC=2;AF=1.00;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	1/1:0,411:1.00:411
chr19	55854313	rs2384685	G	A	926.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:100,46:0.32:146
chr19	55854389	rs12610863	G	A	765.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:4,27:0.87:31
chr19	55856083	rs11084395	T	C	1899.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:83,90:0.52:173
chr19	55856211	rs10405231	C	T	3795.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:87,163:0.65:250
chr19	55857777	rs45480394	G	T	1008.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.453;ClippingRankSum=0.000;DB;DP=223;ExcessHet=3.0103;FS=1.170;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.67;ReadPosRankSum=0.638;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:153,63:0.29:216
chr19	55865350	rs12461665	G	A	1326.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:13,53:0.80:66
chr19	55866468	rs12971931	G	C	913.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:12,42:0.78:54
chr19	55869879	rs67168196	GGCTCCTTCATCTCGCCCCATGGCT	G	8939.73	.	AC=2;AF=1.00;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	1/1:3,319:0.99:322
chr19	55870104	rs12974819	G	C	11469.77	.	AC=2;AF=1.00;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	1/1:0,412:1.00:412
chr19	55870289	rs12974907	C	T	13903.77	.	AC=2;AF=1.00;AN=2;DB;DP=519;set=Intersection	GT:AD:AF:DP	1/1:1,509:1.00:510
chr19	55870351	rs12976922	T	C	11126.77	.	AC=2;AF=1.00;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	1/1:0,412:1.00:412
chr19	55870541	.	G	A	5388.77	.	AC=1;AF=0.500;AN=2;DP=433;set=Intersection	GT:AD:AF:DP	0/1:167,262:0.61:429
chr19	55870600	rs12460416	C	G	7835.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr19	55871019	rs12609732	A	G	5302.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr19	55872191	rs897799	G	A	6069.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.40;SOR=1.141;set=HC	GT:AD:AF:DP	1/1:0,239:1.00:239
chr19	55872397	rs2124918	A	G	9414.77	.	AC=2;AF=1.00;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	1/1:0,361:1.00:361
chr19	55872531	rs11084397	C	G	1991.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:58,85:0.59:143
chr19	55872566	rs2124919	A	G	3286.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr19	55872864	rs11673515	G	C	3041.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr19	55872955	rs11673554	G	C	1635.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr19	55873642	rs4252574	C	T	3092.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr19	55877231	rs1042505	C	T	151.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:14,8:0.36:22
chr19	55879872	rs1126757	C	T	3484.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:104,165:0.61:269
chr19	55880385	rs62128183	G	T	353.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:32,18:0.36:50
chr19	55888518	.	T	TCCTGGGTCTGAGGGAGGAGGGCTGGGCCTGGACA	172.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.437;ClippingRankSum=0.000;DP=86;ExcessHet=3.0103;FS=11.453;MLEAC=1;MLEAF=0.500;MQ=59.51;MQRankSum=-3.428;QD=2.79;ReadPosRankSum=2.338;SOR=2.712;set=HC	GT:AD:AF:DP	0/1:53,9:0.15:62
chr19	55895588	rs1870074	G	A	796.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:15,35:0.70:50
chr19	55903158	rs10653185	C	CAG	2701.73	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr19	55913038	rs7608	C	T	1240.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:96,61:0.39:157
chr19	55913286	rs11393810	T	TC	1548.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr19	55914374	rs11672075	C	T	3687.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:130,172:0.57:302
chr19	55964720	rs2303089	G	A	2630.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:49,118:0.71:167
chr19	55966346	rs2277959	C	T	2752.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.081;ClippingRankSum=0.000;DB;DP=217;ExcessHet=3.0103;FS=14.832;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.69;ReadPosRankSum=1.081;SOR=1.462;set=HC	GT:AD:AF:DP	0/1:83,134:0.62:217
chr19	55966895	rs35627652	TG	T	985.73	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:21,37:0.64:58
chr19	55966971	rs12462602	C	T	1965.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:40,85:0.68:125
chr19	55992992	rs74442469	C	T	4451.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.199;ClippingRankSum=0.000;DB;DP=1327;ExcessHet=3.0103;FS=0.623;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.39;ReadPosRankSum=0.713;SOR=0.806;set=HC	GT:AD:AF:DP	0/1:1003,311:0.24:1314
chr19	55993260	rs34864744	A	G	11787.77	.	AC=2;AF=1.00;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	1/1:0,410:1.00:410
chr19	55993790	rs7254184	A	G	2499.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:32,109:0.77:141
chr19	55993876	rs10423355	T	C	3278.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr19	55994240	rs12981044	C	T	16397.77	.	AC=2;AF=1.00;AN=2;DB;DP=579;set=Intersection	GT:AD:AF:DP	1/1:2,568:1.00:570
chr19	55994708	rs114775834	A	G	2096.77	.	AC=1;AF=0.500;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	0/1:311,127:0.29:438
chr19	55994823	rs115143283	G	A	931.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:117,51:0.30:168
chr19	55995272	rs11550705	G	A	6035.77	.	AC=1;AF=0.500;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	0/1:97,247:0.72:344
chr19	55996939	rs3745450	G	A	1399.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:5,57:0.92:62
chr19	55998262	rs77664073	C	T	2487.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.709;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=4.612;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.95;ReadPosRankSum=0.600;SOR=0.394;set=HC	GT:AD:AF:DP	0/1:37,119:0.76:156
chr19	55999961	.	G	C	6342.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.483;ClippingRankSum=0.000;DP=448;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.48;ReadPosRankSum=0.580;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:136,302:0.69:438
chr19	55999993	rs4405662	A	G	6172.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.454;ClippingRankSum=0.000;DB;DP=423;ExcessHet=3.0103;FS=0.566;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.84;ReadPosRankSum=-2.254;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:128,288:0.69:416
chr19	56000239	.	A	ATGTGGGAGCACCAAAGCCGTGGTCCCCAGCCCTGACTTCAGGGGCCAGACATCTGCAGCCCCACCCGCCTCAGAGACCTGCGTCTCAGCCAGCCCCTCTGTCCAGAGTCCTTCCTCCCAGCAGTGGGGGTTTCTGGTTCAGAGGTGTGAGGACCG,ATGTGGGAGCACCAAAGCCGTGGTCCCCAGCCCTGACTTCAGGGGCCAGACATCTGCAGCCCCACCCGCCTCAGAGACCTGCGTCTCAGCCAGCCCCTCTGTCCAGAGTCCTTCCTCCCAGCAGTGGGGGTTTCTGGTTCAGAGGTGTGAGGACCGTG	2469.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=205.81;SOR=0.446;set=HC	GT:AD:AF:DP	1/2:12,0,0:0,0:12
chr19	56000429	.	GC	G	1340.73	.	AC=2;AF=1.00;AN=2;DP=79;set=Intersection	GT:AD:AF:DP	1/1:1,53:0.98:54
chr19	56000809	rs142097230	C	T	2409.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:52,109:0.68:161
chr19	56000896	rs62130160	G	T	1993.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:43,91:0.68:134
chr19	56001419	rs10716127	CG	C	484.73	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:7,15:0.68:22
chr19	56005354	rs3044271	C	CGGGG	214.80	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.80;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr19	56009191	rs34794462	GT	G	180.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.963;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=1.885;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.16;ReadPosRankSum=-0.291;SOR=0.315;set=HC	GT:AD:AF:DP	0/1:27,8:0.23:35
chr19	56011091	rs4801314	G	A	817.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:83,43:0.34:126
chr19	56012381	rs11084400	T	C	1330.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.368;ClippingRankSum=0.000;DB;DP=354;ExcessHet=3.0103;FS=2.729;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.85;ReadPosRankSum=0.743;SOR=0.882;set=HC	GT:AD:AF:DP	0/1:258,88:0.25:346
chr19	56015613	rs10421885	A	C	576.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.581;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=0.810;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.27;ReadPosRankSum=0.957;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:98,37:0.27:135
chr19	56024519	rs671542	T	C	3485.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr19	56024563	rs514574	G	C	1994.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr19	56024599	rs671152	A	G	1044.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr19	56029465	rs4801331	G	A	15653.77	.	AC=2;AF=1.00;AN=2;DB;DP=622;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.49;QD=25.70;SOR=1.164;set=HC	GT:AD:AF:DP	1/1:0,609:1.00:609
chr19	56030009	rs925878	C	T	22077.77	.	AC=2;AF=1.00;AN=2;DB;DP=920;set=Intersection	GT:AD:AF:DP	1/1:0,899:1.00:899
chr19	56030428	rs10217	C	A	8045.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.230;ClippingRankSum=0.000;DB;DP=293;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=28.13;ReadPosRankSum=1.546;SOR=0.523;set=HC	GT:AD:AF:DP	1/1:1,285:1.00:286
chr19	56040962	rs71830799	CAGAGAGG	C	4264.73	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:42,107:0.72:149
chr19	56041255	rs620251	C	G	5256.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr19	56047448	rs310453	A	G	11106.77	.	AC=2;AF=1.00;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	1/1:0,420:1.00:420
chr19	56052337	rs55643341	A	AC	37104.73	.	AC=2;AF=1.00;AN=2;DB;DP=1428;set=Intersection	GT:AD:AF:DP	1/1:3,1366:1.00:1369
chr19	56052400	rs35844194	G	T	11748.77	.	AC=1;AF=0.500;AN=2;DB;DP=721;set=Intersection	GT:AD:AF:DP	0/1:200,517:0.72:717
chr19	56052770	rs654439	C	T	10233.77	.	AC=2;AF=1.00;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	1/1:0,380:1.00:380
chr19	56055396	rs7256162	C	T	4685.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:1,180:0.99:181
chr19	56056184	rs491639	A	G	1652.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr19	56104136	rs7247236	T	C	4595.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:83,184:0.69:267
chr19	56114045	rs1077806	C	T	11166.77	.	AC=2;AF=1.00;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	1/1:2,414:1.00:416
chr19	56114237	rs310459	G	A	6909.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr19	56133632	.	C	T	412.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.182;ClippingRankSum=0.000;DP=128;ExcessHet=3.0103;FS=2.618;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.28;ReadPosRankSum=1.024;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:94,32:0.25:126
chr19	56153868	rs310475	G	A	7529.77	.	AC=1;AF=0.500;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	0/1:102,336:0.77:438
chr19	56160399	rs7246799	T	C	1798.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr19	56162776	rs2287791	C	T	1941.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:27,88:0.77:115
chr19	56162881	rs519856	C	T	957.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:12,41:0.77:53
chr19	56170771	rs537728	G	A	2778.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr19	56171778	rs507498	A	C	3585.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr19	56175147	rs2303087	C	A	864.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.516;ClippingRankSum=0.000;DB;DP=212;ExcessHet=3.0103;FS=0.613;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.22;ReadPosRankSum=-1.444;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:151,54:0.26:205
chr19	56175149	rs310444	G	A	6404.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr19	56179746	rs58490076	G	A	365.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:47,18:0.28:65
chr19	56180732	rs681804	T	C	3339.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:52,141:0.73:193
chr19	56180968	rs617073	C	T	2271.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:31,96:0.76:127
chr19	56185250	rs664684	G	A	8473.77	.	AC=1;AF=0.500;AN=2;DB;DP=525;set=Intersection	GT:AD:AF:DP	0/1:135,376:0.74:511
chr19	56188772	rs10415521	T	C	341.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:43,16:0.27:59
chr19	56200667	rs200478642	C	T	12404.77	.	AC=1;AF=0.500;AN=2;DB;DP=745;set=Intersection	GT:AD:AF:DP	0/1:150,583:0.80:733
chr19	56220430	.	G	GT	76.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.399;ClippingRankSum=0.000;DP=167;ExcessHet=3.0103;FS=0.894;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.54;ReadPosRankSum=0.033;SOR=0.523;set=HC	GT:AD:AF:DP	0/1:118,25:0.17:143
chr19	56235537	rs10423927	A	G	233.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.494;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.84;ReadPosRankSum=1.338;SOR=0.764;set=HC	GT:AD:AF:DP	0/1:103,24:0.19:127
chr19	56241265	rs193384	A	G	6035.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr19	56249445	rs755804	A	G	2138.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr19	56270555	rs199838993	T	C	127.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.194;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=1.911;MLEAC=1;MLEAF=0.500;MQ=56.59;MQRankSum=-4.576;QD=3.36;ReadPosRankSum=1.772;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:32,6:0.16:38
chr19	56270556	rs200698882	A	T	127.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.069;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=2.027;MLEAC=1;MLEAF=0.500;MQ=56.40;MQRankSum=-4.438;QD=3.55;ReadPosRankSum=1.640;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:30,6:0.17:36
chr19	56273136	rs59333538	T	C	7295.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr19	56274424	rs150161449	C	A	11015.77	.	AC=1;AF=0.500;AN=2;DB;DP=1320;set=Intersection	GT:AD:AF:DP	0/1:730,588:0.45:1318
chr19	56274453	rs75239380	G	A	5845.77	.	AC=1;AF=0.500;AN=2;DB;DP=1044;set=Intersection	GT:AD:AF:DP	0/1:714,329:0.32:1043
chr19	56284069	.	C	T	2037.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.372;ClippingRankSum=0.000;DP=307;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.45;MQRankSum=-5.656;QD=6.88;ReadPosRankSum=0.381;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:188,108:0.36:296
chr19	56284197	rs117388121	C	G	489.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.432;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=45.26;MQRankSum=-5.893;QD=10.65;ReadPosRankSum=-5.861;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:21,25:0.54:46
chr19	56284396	rs141642534	A	T	325.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.40;QD=29.62;SOR=3.442;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr19	56284428	rs150473927	C	A	4005.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.247;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=1.124;MLEAC=2;MLEAF=1.000;MQ=45.82;MQRankSum=-6.352;QD=22.63;ReadPosRankSum=1.024;SOR=0.983;set=HC	GT:AD:AF:DP	1/1:13,164:0.93:177
chr19	56284457	rs78244980	G	A	7821.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.780;ClippingRankSum=0.000;DB;DP=346;ExcessHet=3.0103;FS=0.875;MLEAC=2;MLEAF=1.000;MQ=46.26;MQRankSum=-7.073;QD=23.01;ReadPosRankSum=-0.647;SOR=0.912;set=HC	GT:AD:AF:DP	1/1:20,320:0.94:340
chr19	56284507	rs115250131	T	G	19513.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.487;ClippingRankSum=0.000;DB;DP=505;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.45;MQRankSum=-6.545;QD=38.64;ReadPosRankSum=2.051;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:36,469:0.93:505
chr19	56284511	rs116745378	C	G	19513.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.710;ClippingRankSum=0.000;DB;DP=505;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.45;MQRankSum=-6.545;QD=38.64;ReadPosRankSum=2.588;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:36,469:0.93:505
chr19	56284529	rs199519773	C	A	17618.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.302;ClippingRankSum=0.000;DB;DP=477;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.44;MQRankSum=-6.421;QD=36.94;ReadPosRankSum=3.010;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:34,443:0.93:477
chr19	56284535	rs144990325	A	G	17155.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.230;ClippingRankSum=0.000;DB;DP=441;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.28;MQRankSum=-6.980;QD=38.90;ReadPosRankSum=4.171;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:34,407:0.92:441
chr19	56284582	rs201888659	A	T	6235.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.136;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=2.005;MLEAC=2;MLEAF=1.000;MQ=45.43;MQRankSum=-0.007;QD=40.23;ReadPosRankSum=2.752;SOR=1.345;set=HC	GT:AD:AF:DP	1/1:4,151:0.97:155
chr19	56284587	rs200252021	C	G	5916.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.852;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.39;MQRankSum=3.449;QD=44.82;ReadPosRankSum=2.212;SOR=1.556;set=HC	GT:AD:AF:DP	1/1:2,130:0.98:132
chr19	56284614	rs199744839	C	T	1586.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.07;QD=30.51;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr19	56297164	rs116820715	T	G	6555.77	.	AC=1;AF=0.500;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	0/1:87,282:0.76:369
chr19	56300107	.	CAAAA	C	1068.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.206;ClippingRankSum=0.000;DP=58;ExcessHet=3.0103;FS=54.164;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=0.630;QD=24.29;ReadPosRankSum=2.550;SOR=4.735;set=HC	GT:AD:AF:DP	0/1:11,33:0.75:44
chr19	56307583	rs2616940	A	G	2234.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:36,103:0.74:139
chr19	56307723	rs10422937	T	C	96.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:16,6:0.27:22
chr19	56319167	rs7254875	C	T	4437.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:81,195:0.71:276
chr19	56320663	rs12461110	G	A	1441.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.476;ClippingRankSum=0.000;DB;DP=356;ExcessHet=3.0103;FS=0.938;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.12;ReadPosRankSum=0.431;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:262,88:0.25:350
chr19	56321414	rs299163	C	A	19312.77	.	AC=2;AF=1.00;AN=2;DB;DP=725;set=Intersection	GT:AD:AF:DP	1/1:0,709:1.00:709
chr19	56321517	rs7249635	T	C	15988.77	.	AC=1;AF=0.500;AN=2;DB;DP=889;set=Intersection	GT:AD:AF:DP	0/1:210,672:0.76:882
chr19	56329186	.	G	GGAA	740.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.274;ClippingRankSum=0.000;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.03;MQRankSum=0.000;QD=20.58;ReadPosRankSum=1.338;SOR=1.473;set=HC	GT:AD:AF:DP	0/1:9,27:0.75:36
chr19	56369314	rs16986718	G	A	9571.77	.	AC=1;AF=0.500;AN=2;DB;DP=550;set=Intersection	GT:AD:AF:DP	0/1:136,409:0.75:545
chr19	56372705	rs4801635	C	T	4187.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr19	56388262	rs16986758	C	T	1447.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:28,60:0.68:88
chr19	56388527	rs117456828	T	A	2754.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:30,113:0.79:143
chr19	56393051	rs302457	T	C	5178.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr19	56410222	rs302827	C	T	2101.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.572;ClippingRankSum=0.000;DB;DP=546;ExcessHet=3.0103;FS=0.599;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.98;ReadPosRankSum=1.512;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:392,136:0.26:528
chr19	56410340	rs302828	T	G	4947.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr19	56413583	rs302835	A	G	6270.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr19	56416409	rs28506091	G	A	1567.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:59,75:0.56:134
chr19	56421775	rs11670284	C	T	897.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr19	56423668	rs304001	G	A	1136.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.153;ClippingRankSum=0.000;DB;DP=282;ExcessHet=3.0103;FS=4.735;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.07;ReadPosRankSum=-0.214;SOR=0.999;set=HC	GT:AD:AF:DP	0/1:209,70:0.25:279
chr19	56423692	rs304000	C	T	816.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.373;ClippingRankSum=0.000;DB;DP=272;ExcessHet=3.0103;FS=6.224;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.03;ReadPosRankSum=0.930;SOR=0.977;set=HC	GT:AD:AF:DP	0/1:211,59:0.22:270
chr19	56423728	rs303999	A	G	954.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.187;ClippingRankSum=0.000;DB;DP=275;ExcessHet=3.0103;FS=8.452;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.51;ReadPosRankSum=-1.003;SOR=0.943;set=HC	GT:AD:AF:DP	0/1:213,59:0.22:272
chr19	56423893	rs303998	G	A	1287.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.362;ClippingRankSum=0.000;DB;DP=441;ExcessHet=3.0103;FS=0.637;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.95;ReadPosRankSum=0.973;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:342,94:0.22:436
chr19	56424443	rs303997	T	C	1629.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.360;ClippingRankSum=0.000;DB;DP=390;ExcessHet=3.0103;FS=1.351;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.18;ReadPosRankSum=1.747;SOR=0.611;set=HC	GT:AD:AF:DP	0/1:285,105:0.27:390
chr19	56424532	rs731338	G	A	886.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:170,57:0.25:227
chr19	56424689	rs1865956	G	T	1282.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:22,57:0.72:79
chr19	56435454	rs45565240	G	A	6197.77	.	AC=1;AF=0.500;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	0/1:102,252:0.71:354
chr19	56443864	rs145915426	T	TTTTTTG	88.73	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:14,4:0.22:18
chr19	56459342	rs306507	C	T	13888.77	.	AC=2;AF=1.00;AN=2;DB;DP=515;set=Intersection	GT:AD:AF:DP	1/1:0,513:1.00:513
chr19	56459614	rs306506	G	C	13784.77	.	AC=2;AF=1.00;AN=2;DB;DP=519;set=Intersection	GT:AD:AF:DP	1/1:1,507:1.00:508
chr19	56459703	rs1436077	A	G	601.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.042;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=1.661;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.69;ReadPosRankSum=1.150;SOR=0.491;set=HC	GT:AD:AF:DP	0/1:124,39:0.24:163
chr19	56464058	rs306501	C	G	4067.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr19	56464152	rs73613404	C	T	125.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:32,10:0.24:42
chr19	56473460	rs6509975	T	C	938.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.019;ClippingRankSum=0.000;DB;DP=322;ExcessHet=3.0103;FS=1.036;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.95;ReadPosRankSum=-0.257;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:247,71:0.22:318
chr19	56473645	rs11671531	A	G	669.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:7,25:0.78:32
chr19	56477499	rs73934219	G	A	1649.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:28,66:0.70:94
chr19	56477687	rs306497	A	G	7764.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr19	56477710	rs306496	T	C	3365.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:46,150:0.77:196
chr19	56487450	rs306482	T	G	1830.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.911;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=2.454;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.68;ReadPosRankSum=0.910;SOR=1.097;set=HC	GT:AD:AF:DP	0/1:24,74:0.76:98
chr19	56490778	rs306475	C	T	1580.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr19	56490943	rs11084419	C	T	658.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:119,44:0.27:163
chr19	56499279	rs306457	G	C	11058.77	.	AC=2;AF=1.00;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	1/1:0,421:1.00:421
chr19	56499337	rs306456	C	T	832.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.100;ClippingRankSum=0.000;DB;DP=205;ExcessHet=3.0103;FS=2.248;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.10;ReadPosRankSum=-0.677;SOR=0.480;set=HC	GT:AD:AF:DP	0/1:150,53:0.26:203
chr19	56499345	rs306455	A	G	5993.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr19	56510965	rs62123572	C	T	4706.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr19	56511082	rs35427984	C	G	5965.77	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:100,262:0.72:362
chr19	56520091	rs12460573	C	T	596.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:82,32:0.28:114
chr19	56520129	rs12460633	G	A	1043.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.227;ClippingRankSum=0.000;DB;DP=220;ExcessHet=3.0103;FS=2.690;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.83;ReadPosRankSum=0.602;SOR=0.920;set=HC	GT:AD:AF:DP	0/1:155,61:0.28:216
chr19	56520150	rs12460592	C	G	1252.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.187;ClippingRankSum=0.000;DB;DP=270;ExcessHet=3.0103;FS=0.497;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.71;ReadPosRankSum=-0.267;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:190,76:0.29:266
chr19	56530664	rs306428	A	G	1410.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.488;ClippingRankSum=0.000;DB;DP=495;ExcessHet=3.0103;FS=0.644;MLEAC=1;MLEAF=0.500;MQ=58.47;MQRankSum=-18.477;QD=2.88;ReadPosRankSum=-0.930;SOR=0.837;set=HC	GT:AD:AF:DP	0/1:380,110:0.22:490
chr19	56531700	rs62120423	G	A	8734.77	.	AC=1;AF=0.500;AN=2;DB;DP=517;set=Intersection	GT:AD:AF:DP	0/1:134,382:0.74:516
chr19	56538203	rs3103612	C	A	1828.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr19	56549532	rs306447	A	G	7955.77	.	AC=1;AF=0.500;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	0/1:129,344:0.73:473
chr19	56552230	rs2569425	A	G	1650.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:23,57:0.71:80
chr19	56561749	rs2574762	A	G	2247.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr19	56564916	rs35553570	G	C	361.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:45,19:0.30:64
chr19	56565164	rs3103057	G	A	6092.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr19	56565233	rs386127	A	T	1332.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:13,51:0.80:64
chr19	56599437	rs5828672	CTCG	C	1568.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr19	56600527	rs490015	G	A	1236.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr19	56614652	rs473045	G	A	4958.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr19	56663256	rs502722	A	G	11386.77	.	AC=2;AF=1.00;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	1/1:1,411:1.00:412
chr19	56669758	rs679557	T	C	3625.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:1,133:0.99:134
chr19	56671656	rs60367783	T	C	341.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:7,16:0.70:23
chr19	56671692	rs10407167	G	A	286.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:6,12:0.67:18
chr19	56688669	rs4801681	A	G	5096.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:57,216:0.79:273
chr19	56691912	rs274171	G	C	8995.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,323:1.00:323
chr19	56693620	rs3745833	C	G	6964.77	.	AC=1;AF=0.500;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	0/1:113,310:0.73:423
chr19	56693643	rs274174	T	C	8102.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr19	56694505	rs575756	C	T	1262.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.080;ClippingRankSum=0.000;DB;DP=375;ExcessHet=3.0103;FS=0.921;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.39;ReadPosRankSum=2.010;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:280,92:0.25:372
chr19	56696524	rs117735362	G	T	1128.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:28,51:0.65:79
chr19	56703248	rs527025	G	A	8004.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr19	56758938	rs35779585	G	A	6967.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;MQ=60.08;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr19	56901293	rs6509995	C	T	700.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:105,41:0.28:146
chr19	56904509	.	TA	T	275.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.397;ClippingRankSum=0.000;DP=315;ExcessHet=3.0103;FS=3.621;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=1.918;QD=0.92;ReadPosRankSum=-1.205;SOR=0.449;set=HC	GT:AD:AF:DP	0/1:234,67:0.22:301
chr19	56918560	rs4801159	T	A	225.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.496;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.80;ReadPosRankSum=-0.501;SOR=0.840;set=HC	GT:AD:AF:DP	0/1:33,14:0.30:47
chr19	56918574	rs2288862	T	C	170.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:29,12:0.29:41
chr19	56918598	rs2288863	T	C	141.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:17,9:0.35:26
chr19	56953863	rs8107758	T	C	7331.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr19	56953963	rs35914474	G	A	19042.77	.	AC=2;AF=1.00;AN=2;DB;DP=704;set=Intersection	GT:AD:AF:DP	1/1:1,701:1.00:702
chr19	56954103	rs7253217	C	A	1249.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.328;ClippingRankSum=0.000;DB;DP=442;ExcessHet=3.0103;FS=3.301;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.88;ReadPosRankSum=0.164;SOR=0.930;set=HC	GT:AD:AF:DP	0/1:343,91:0.21:434
chr19	56961144	rs35614616	T	A	103.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr19	56969332	rs3745826	A	G	877.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr19	56973848	rs35027158	T	C	7049.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr19	56978525	rs11881919	T	G	1362.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.184;ClippingRankSum=0.000;DB;DP=266;ExcessHet=3.0103;FS=1.042;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.34;ReadPosRankSum=1.491;SOR=0.799;set=HC	GT:AD:AF:DP	0/1:176,79:0.31:255
chr19	57023025	rs67525856	CTT	C	16488.73	.	AC=2;AF=1.00;AN=2;DB;DP=460;set=Intersection	GT:AD:AF:DP	1/1:0,429:1.00:429
chr19	57027606	rs10419939	C	T	4624.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr19	57036012	rs11667052	G	T	4311.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr19	57036653	rs3752176	G	A	3917.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr19	57037103	rs16987303	C	G	7057.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:4,250:0.98:254
chr19	57050648	rs12981980	G	A	3405.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:2,132:0.99:134
chr19	57062073	rs379214	T	C	2201.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:41,91:0.69:132
chr19	57066013	rs10409531	C	T	6741.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr19	57085769	rs10421285	G	C	17511.77	.	AC=2;AF=1.00;AN=2;DB;DP=646;set=Intersection	GT:AD:AF:DP	1/1:0,628:1.00:628
chr19	57087951	rs995934	G	A	389.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr19	57089050	rs4801177	C	T	8589.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:2,316:0.99:318
chr19	57089375	rs4570977	A	G	9122.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr19	57132968	rs2072501	G	A	12118.77	.	AC=1;AF=0.500;AN=2;DB;DP=731;set=Intersection	GT:AD:AF:DP	0/1:187,532:0.74:719
chr19	57175484	rs7250003	A	G	3610.77	.	AC=1;AF=0.500;AN=2;DB;DP=613;set=Intersection	GT:AD:AF:DP	0/1:407,198:0.33:605
chr19	57176198	rs8108756	T	G	2147.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.421;ClippingRankSum=0.000;DB;DP=877;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.48;ReadPosRankSum=-1.824;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:690,176:0.20:866
chr19	57176304	rs12460400	T	G	2586.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.720;ClippingRankSum=0.000;DB;DP=641;ExcessHet=3.0103;FS=0.591;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.12;ReadPosRankSum=-1.414;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:461,167:0.27:628
chr19	57176482	rs12462469	C	T	2820.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.287;ClippingRankSum=0.000;DB;DP=748;ExcessHet=3.0103;FS=0.609;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.82;ReadPosRankSum=2.252;SOR=0.618;set=HC	GT:AD:AF:DP	0/1:556,182:0.25:738
chr19	57176820	rs12462993	C	A	406.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.741;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.932;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.03;ReadPosRankSum=1.063;SOR=0.825;set=HC	GT:AD:AF:DP	0/1:75,26:0.26:101
chr19	57176838	rs12462995	C	G	338.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:52,21:0.29:73
chr19	57293394	rs2286751	A	G	4553.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:73,199:0.73:272
chr19	57327503	rs33931963	A	G	14205.77	.	AC=2;AF=1.00;AN=2;DB;DP=540;set=Intersection	GT:AD:AF:DP	1/1:2,536:1.00:538
chr19	57335179	rs1860566	T	C	7482.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr19	57641146	rs1027392	A	G	8616.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr19	57641799	rs3795003	G	A	1347.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.910;ClippingRankSum=0.000;DB;DP=383;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.61;ReadPosRankSum=1.014;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:283,90:0.24:373
chr19	57642098	rs3764574	G	A	6149.77	.	AC=1;AF=0.500;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	0/1:96,276:0.74:372
chr19	57642610	rs117302403	A	G	889.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.162;ClippingRankSum=0.000;DB;DP=481;ExcessHet=3.0103;FS=2.401;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.87;ReadPosRankSum=1.381;SOR=0.937;set=HC	GT:AD:AF:DP	0/1:393,82:0.17:475
chr19	57642782	rs9973206	C	A	2648.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr19	57646218	rs17305549	C	T	628.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.210;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=6.636;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.95;ReadPosRankSum=-0.782;SOR=1.243;set=HC	GT:AD:AF:DP	0/1:170,43:0.20:213
chr19	57646249	rs59231549	C	T	1072.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.812;ClippingRankSum=0.000;DB;DP=278;ExcessHet=3.0103;FS=1.104;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.89;ReadPosRankSum=-0.198;SOR=0.806;set=HC	GT:AD:AF:DP	0/1:209,67:0.24:276
chr19	57646570	rs4801433	T	C	5423.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:66,232:0.78:298
chr19	57647015	rs7251328	A	G	14069.77	.	AC=2;AF=1.00;AN=2;DB;DP=546;set=Intersection	GT:AD:AF:DP	1/1:1,532:1.00:533
chr19	57647236	rs7252632	T	C	12138.77	.	AC=2;AF=1.00;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	1/1:0,448:1.00:448
chr19	57648277	rs4801200	A	T	5852.77	.	AC=1;AF=0.500;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	0/1:98,266:0.73:364
chr19	57648433	rs2370135	T	C	6058.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr19	57649901	rs17305556	G	A	746.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.735;ClippingRankSum=0.000;DB;DP=294;ExcessHet=3.0103;FS=2.454;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.54;ReadPosRankSum=0.145;SOR=0.870;set=HC	GT:AD:AF:DP	0/1:233,61:0.21:294
chr19	57649940	rs17305563	A	T	1151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.359;ClippingRankSum=0.000;DB;DP=339;ExcessHet=3.0103;FS=0.971;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.42;ReadPosRankSum=-0.599;SOR=0.611;set=HC	GT:AD:AF:DP	0/1:255,82:0.24:337
chr19	57653864	rs11084488	T	C	1294.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:10,52:0.84:62
chr19	57654065	rs58537382	T	C	3871.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:47,168:0.78:215
chr19	57654104	rs59976893	T	C	4114.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:46,170:0.79:216
chr19	57654216	rs77434521	T	G	297.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.546;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=2.746;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.25;ReadPosRankSum=0.113;SOR=0.295;set=HC	GT:AD:AF:DP	0/1:51,19:0.27:70
chr19	57654217	rs10426157	T	G	1220.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.534;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=1.266;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.95;ReadPosRankSum=-0.493;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:18,50:0.74:68
chr19	57665750	rs8108591	T	C	2794.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:36,120:0.77:156
chr19	57665888	rs10420848	A	G	474.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.487;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=1.454;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.67;ReadPosRankSum=-1.520;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:139,39:0.22:178
chr19	57665927	rs74258096	C	T	540.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.071;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=0.944;MLEAC=1;MLEAF=0.500;MQ=59.48;MQRankSum=-2.976;QD=5.75;ReadPosRankSum=-1.952;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:70,24:0.26:94
chr19	57665950	rs147982862	T	G	316.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.957;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=3.636;MLEAC=1;MLEAF=0.500;MQ=59.17;MQRankSum=-3.500;QD=5.28;ReadPosRankSum=1.887;SOR=1.695;set=HC	GT:AD:AF:DP	0/1:48,12:0.20:60
chr19	57665950	.	T	TG	592	.	AC=1;AF=0.500;AN=2;BRF=0.4;FR=0.5000;HP=14;HapScore=3;MGOF=16;MMLQ=24;MQ=58.87;NF=0;NR=20;PP=592;QD=29.75;SC=TTTTTTTTTTTAGACGGAGTC;SbPval=1.0;Source=Platypus;TC=53;TCF=4;TCR=49;TR=20;WE=57665974;WS=57665917;set=Platypus	GT:AD:AF:DP	0/1:33,20:0.38:53
chr19	57665963	rs142792522	A	G	294.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.003;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=3.706;MLEAC=1;MLEAF=0.500;MQ=58.20;MQRankSum=-1.703;QD=5.17;ReadPosRankSum=2.012;SOR=1.473;set=HC	GT:AD:AF:DP	0/1:46,11:0.19:57
chr19	57665966	rs145678714	T	C	294.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.623;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=3.661;MLEAC=1;MLEAF=0.500;MQ=58.13;MQRankSum=-1.829;QD=5.36;ReadPosRankSum=2.472;SOR=1.371;set=HC	GT:AD:AF:DP	0/1:45,10:0.18:55
chr19	57666840	rs12459119	G	A	467.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:10,18:0.64:28
chr19	57670805	rs12609860	A	G	1258.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:132,64:0.33:196
chr19	57742472	rs11084490	G	C	10341.77	.	AC=2;AF=1.00;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	1/1:0,385:1.00:385
chr19	57742489	rs58264281	C	T	18292.77	.	AC=2;AF=1.00;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	1/1:0,408:1.00:408
chr19	57742493	rs142269286	AGGACGAGCAGGATT	A	18506.73	.	AC=2;AF=1.00;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	1/1:0,412:1.00:412
chr19	57742703	rs758097	A	G	2822.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr19	57743039	rs758098	T	C	5744.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.62;SOR=1.382;set=HC	GT:AD:AF:DP	1/1:0,208:1.00:208
chr19	57743067	rs2361127	C	G	10253.77	.	AC=2;AF=1.00;AN=2;DB;DP=413;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.32;SOR=1.053;set=HC	GT:AD:AF:DP	1/1:0,405:1.00:405
chr19	57743334	rs758099	C	T	2112.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr19	57743766	rs2074859	C	T	1313.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr19	57755567	rs71186238	CT	C	132.87	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.284;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=2.354;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.000;QD=3.80;ReadPosRankSum=-0.954;SOR=1.708;set=HC	GT:AD:AF:DP	0/1:17,18:0.51:35
chr19	57760216	rs1019071	G	A	2962.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:34,129:0.79:163
chr19	57796192	rs117683431	T	C,TC	3002.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.084;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=7.202;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=28.60;ReadPosRankSum=1.157;SOR=2.931;set=HC	GT:AD:AF:DP	1/2:1,86,18:0.82,0.17:105
chr19	57802024	rs45619736	G	A	1529.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr19	57802806	rs2041109	C	T	15305.77	.	AC=2;AF=1.00;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	1/1:1,364:1.00:365
chr19	57802824	rs2041110	G	A	14862.77	.	AC=2;AF=1.00;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	1/1:1,343:1.00:344
chr19	57832059	rs139155349	C	G	520.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:11,25:0.69:36
chr19	57832089	rs4801461	G	T	1577.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr19	57832214	rs56960413	G	T	2919.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:54,137:0.72:191
chr19	57832257	rs4801462	T	C	4647.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr19	57835252	rs4801216	C	T	4500.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr19	57835279	rs4801467	G	A	2874.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr19	57837926	rs8110400	C	A	644.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.571;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=1.419;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.93;ReadPosRankSum=-1.608;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:121,43:0.26:164
chr19	57838018	rs6510057	C	G	824.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.371;ClippingRankSum=0.000;DB;DP=323;ExcessHet=3.0103;FS=1.040;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.55;ReadPosRankSum=-0.543;SOR=0.615;set=HC	GT:AD:AF:DP	0/1:254,69:0.21:323
chr19	57839150	rs8100491	A	G	4893.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr19	57839567	rs1968090	T	A	16582.77	.	AC=2;AF=1.00;AN=2;DB;DP=605;set=Intersection	GT:AD:AF:DP	1/1:0,595:1.00:595
chr19	57863052	rs117111481	T	C	4858.77	.	AC=1;AF=0.500;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:95,220:0.70:315
chr19	57868336	rs862709	A	G	17651.77	.	AC=2;AF=1.00;AN=2;DB;DP=661;set=Intersection	GT:AD:AF:DP	1/1:0,649:1.00:649
chr19	57890000	rs2361119	C	T	5731.77	.	AC=1;AF=0.500;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	0/1:91,251:0.73:342
chr19	57901548	rs12460423	G	T	4666.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:79,208:0.72:287
chr19	57909872	rs4801478	G	A	6238.77	.	AC=1;AF=0.500;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	0/1:116,258:0.69:374
chr19	57922664	rs4801480	T	C	1619.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:46,66:0.59:112
chr19	57931553	rs10417533	C	T	5582.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:79,218:0.73:297
chr19	57955244	rs12986235	A	G	929.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.140;ClippingRankSum=0.000;DB;DP=330;ExcessHet=3.0103;FS=3.006;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.88;ReadPosRankSum=-0.952;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:253,70:0.22:323
chr19	57983457	rs10153521	A	G	999.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:125,52:0.29:177
chr19	57985460	rs2074059	T	A	1341.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.421;ClippingRankSum=0.000;DB;DP=406;ExcessHet=3.0103;FS=0.422;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.35;ReadPosRankSum=-1.777;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:302,98:0.24:400
chr19	57985566	rs2074060	G	C	877.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.639;ClippingRankSum=0.000;DB;DP=325;ExcessHet=3.0103;FS=0.495;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.73;ReadPosRankSum=1.470;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:252,69:0.21:321
chr19	57985851	rs35902786	C	T	669.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.716;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=4.464;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.59;ReadPosRankSum=-0.643;SOR=1.086;set=HC	GT:AD:AF:DP	0/1:106,40:0.27:146
chr19	57985889	rs7257644	T	C	932.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:118,48:0.29:166
chr19	57986184	rs2285607	G	A	1796.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.983;ClippingRankSum=0.000;DB;DP=349;ExcessHet=3.0103;FS=1.955;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.16;ReadPosRankSum=1.761;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:246,102:0.29:348
chr19	57987895	rs2074065	C	T	383.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.314;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=2.587;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.81;ReadPosRankSum=1.001;SOR=1.426;set=HC	GT:AD:AF:DP	0/1:47,19:0.29:66
chr19	58002819	rs6510085	T	A	1060.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.903;ClippingRankSum=0.000;DB;DP=370;ExcessHet=3.0103;FS=2.796;MLEAC=1;MLEAF=0.500;MQ=59.06;MQRankSum=-6.488;QD=2.94;ReadPosRankSum=0.206;SOR=0.530;set=HC	GT:AD:AF:DP	0/1:280,81:0.22:361
chr19	58002964	rs8108040	G	C	1287.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.943;ClippingRankSum=0.000;DB;DP=292;ExcessHet=3.0103;FS=2.224;MLEAC=1;MLEAF=0.500;MQ=56.46;MQRankSum=-2.157;QD=4.47;ReadPosRankSum=-1.704;SOR=0.552;set=HC	GT:AD:AF:DP	0/1:208,80:0.28:288
chr19	58003580	rs2074071	A	G	2087.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.437;ClippingRankSum=0.000;DB;DP=574;ExcessHet=3.0103;FS=2.047;MLEAC=1;MLEAF=0.500;MQ=59.44;MQRankSum=-7.931;QD=3.66;ReadPosRankSum=0.893;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:429,141:0.25:570
chr19	58003613	rs2074072	C	T	2153.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.515;ClippingRankSum=0.000;DB;DP=508;ExcessHet=3.0103;FS=1.985;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.26;ReadPosRankSum=-1.659;SOR=0.605;set=HC	GT:AD:AF:DP	0/1:370,136:0.27:506
chr19	58003728	rs2074073	G	A	1797.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.235;ClippingRankSum=0.000;DB;DP=430;ExcessHet=3.0103;FS=0.600;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.22;ReadPosRankSum=-0.832;SOR=0.790;set=HC	GT:AD:AF:DP	0/1:314,112:0.26:426
chr19	58003873	rs2074074	C	T	657.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.067;ClippingRankSum=0.000;DB;DP=230;ExcessHet=3.0103;FS=3.948;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.96;ReadPosRankSum=2.061;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:172,50:0.23:222
chr19	58004158	rs2074075	C	T	257.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.691;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=4.099;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.78;ReadPosRankSum=-0.381;SOR=1.181;set=HC	GT:AD:AF:DP	0/1:118,27:0.19:145
chr19	58004346	rs2074076	G	C	518.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.472;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.44;ReadPosRankSum=-0.084;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:117,34:0.23:151
chr19	58004931	rs2074077	A	G	1893.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.799;ClippingRankSum=0.000;DB;DP=677;ExcessHet=3.0103;FS=2.225;MLEAC=1;MLEAF=0.500;MQ=57.99;MQRankSum=-11.436;QD=2.88;ReadPosRankSum=1.304;SOR=0.869;set=HC	GT:AD:AF:DP	0/1:522,136:0.21:658
chr19	58017869	rs146343876	A	T	543.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.122;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=0.669;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.89;ReadPosRankSum=-0.079;SOR=0.817;set=HC	GT:AD:AF:DP	0/1:148,40:0.21:188
chr19	58038964	rs12461014	T	A	9913.77	.	AC=2;AF=1.00;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	1/1:0,378:1.00:378
chr19	58083467	rs73060436	C	T	1884.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:39,83:0.68:122
chr19	58089521	rs886265	G	C	2755.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr19	58095678	rs11880137	C	G	4194.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:48,157:0.77:205
chr19	58100092	rs45569842	T	C	7169.77	.	AC=1;AF=0.500;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	0/1:73,304:0.81:377
chr19	58115803	rs11881999	C	A	15988.77	.	AC=1;AF=0.500;AN=2;DB;DP=947;set=Intersection	GT:AD:AF:DP	0/1:240,701:0.74:941
chr19	58117223	rs2360543	T	A	7383.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr19	58118715	rs10715037	CT	C	2152.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.478;ClippingRankSum=0.000;DB;DP=364;ExcessHet=3.0103;FS=2.910;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.199;QD=8.48;ReadPosRankSum=1.404;SOR=0.968;set=HC	GT:AD:AF:DP	0/1:70,184:0.72:254
chr19	58125758	.	G	A	3866.77	.	AC=1;AF=0.500;AN=2;DP=218;set=Intersection	GT:AD:AF:DP	0/1:48,165:0.77:213
chr19	58151338	rs34418076	TG	T	8730.73	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr19	58213952	rs2074078	C	A	2097.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.416;ClippingRankSum=0.000;DB;DP=564;ExcessHet=3.0103;FS=5.003;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.88;ReadPosRankSum=0.285;SOR=0.419;set=HC	GT:AD:AF:DP	0/1:402,139:0.26:541
chr19	58231807	rs2239986	A	G	10268.77	.	AC=2;AF=1.00;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	1/1:0,385:1.00:385
chr19	58258466	rs60751243	G	T	2808.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.256;ClippingRankSum=0.000;DB;DP=762;ExcessHet=3.0103;FS=0.608;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.78;ReadPosRankSum=0.299;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:557,187:0.25:744
chr19	58258589	rs2074081	G	A	1776.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.939;ClippingRankSum=0.000;DB;DP=373;ExcessHet=3.0103;FS=2.013;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.83;ReadPosRankSum=-0.429;SOR=0.829;set=HC	GT:AD:AF:DP	0/1:267,101:0.27:368
chr19	58262454	rs11419013	C	CT	4166.73	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr19	58281192	rs74911211	T	TC	2631.73	.	AC=1;AF=0.500;AN=2;DB;DP=673;set=Intersection	GT:AD:AF:DP	0/1:457,161:0.26:618
chr19	58281374	rs2285614	G	A	560.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:61,27:0.31:88
chr19	58288169	rs2285615	C	T	1104.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.382;ClippingRankSum=0.000;DB;DP=288;ExcessHet=3.0103;FS=0.577;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.97;ReadPosRankSum=0.257;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:210,68:0.24:278
chr19	58291228	rs2158013	A	G	11291.77	.	AC=2;AF=1.00;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	1/1:0,411:1.00:411
chr19	58301766	rs72530696	TG	T	3344.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.153;ClippingRankSum=0.000;DB;DP=765;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=1.934;QD=4.48;ReadPosRankSum=1.555;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:589,158:0.21:747
chr19	58301946	rs9789253	G	A	2258.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:21,84:0.80:105
chr19	58310732	rs79759180	T	G	973.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:117,55:0.32:172
chr19	58326001	rs2303817	A	G	29633.77	.	AC=2;AF=1.00;AN=2;DB;DP=1091;set=Intersection	GT:AD:AF:DP	1/1:2,1070:1.00:1072
chr19	58326149	rs73068539	C	T	6761.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.649;ClippingRankSum=0.000;DB;DP=387;ExcessHet=3.0103;FS=2.047;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.79;ReadPosRankSum=-0.077;SOR=0.847;set=HC	GT:AD:AF:DP	0/1:87,293:0.77:380
chr19	58341843	rs12983990	A	G	7077.77	.	AC=1;AF=0.500;AN=2;DB;DP=442;set=Intersection	GT:AD:AF:DP	0/1:129,303:0.70:432
chr19	58341978	rs56386189	C	G	1103.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.042;ClippingRankSum=0.000;DB;DP=493;ExcessHet=3.0103;FS=2.340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.29;ReadPosRankSum=-1.157;SOR=0.906;set=HC	GT:AD:AF:DP	0/1:392,91:0.19:483
chr19	58342011	rs6510107	A	G	6301.77	.	AC=1;AF=0.500;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	0/1:55,262:0.83:317
chr19	58352522	rs12981244	G	A	18692.77	.	AC=1;AF=0.500;AN=2;DB;DP=1143;set=Intersection	GT:AD:AF:DP	0/1:310,833:0.73:1143
chr19	58352806	rs35313547	T	C	6004.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:102,237:0.70:339
chr19	58361334	rs28577146	G	A	1267.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.704;ClippingRankSum=0.000;DB;DP=328;ExcessHet=3.0103;FS=0.979;MLEAC=1;MLEAF=0.500;MQ=59.69;MQRankSum=-1.037;QD=3.87;ReadPosRankSum=0.653;SOR=0.786;set=HC	GT:AD:AF:DP	0/1:245,83:0.25:328
chr19	58361371	rs139873841	C	T	1655.77	.	AC=1;AF=0.500;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	0/1:264,105:0.28:369
chr19	58361549	rs58754895	A	G	485.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.167;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=0.863;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=0.000;QD=3.95;ReadPosRankSum=-1.007;SOR=0.816;set=HC	GT:AD:AF:DP	0/1:93,30:0.24:123
chr19	58371136	rs10405648	G	C	685.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.763;ClippingRankSum=0.000;DB;DP=938;ExcessHet=3.0103;FS=1.681;MLEAC=1;MLEAF=0.500;MQ=55.61;MQRankSum=1.091;QD=0.74;ReadPosRankSum=-2.497;SOR=0.937;set=HC	GT:AD:AF:DP	0/1:804,125:0.13:929
chr19	58374149	rs112449475	G	A	1399.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;MQ=59.93;set=Intersection	GT:AD:AF:DP	0/1:175,74:0.30:249
chr19	58419100	rs143399338	AGATTC	A	1041.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.971;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=4.058;QD=6.31;ReadPosRankSum=-0.239;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:130,35:0.21:165
chr19	58419180	rs73068597	G	A	883.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:18,35:0.66:53
chr19	58419841	rs10414704	G	T	8589.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr19	58419874	rs10415951	T	C	10278.77	.	AC=2;AF=1.00;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	1/1:0,376:1.00:376
chr19	58420152	rs17845779	C	A	20204.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.989;ClippingRankSum=0.000;DB;DP=725;ExcessHet=3.0103;FS=1.941;MLEAC=1;MLEAF=0.500;MQ=54.54;MQRankSum=-1.994;QD=28.18;ReadPosRankSum=-1.242;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:207,510:0.71:717
chr19	58420162	rs10416584	T	C	30377.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.134;ClippingRankSum=0.000;DB;DP=748;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.48;MQRankSum=-1.008;QD=41.05;ReadPosRankSum=-1.003;SOR=0.795;set=HC	GT:AD:AF:DP	1/1:2,738:1.00:740
chr19	58420167	rs17852300	T	C	20646.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.574;ClippingRankSum=0.000;DB;DP=770;ExcessHet=3.0103;FS=1.226;MLEAC=1;MLEAF=0.500;MQ=55.94;MQRankSum=-1.603;QD=27.13;ReadPosRankSum=-1.707;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:220,541:0.71:761
chr19	58420699	rs3745133	C	A	23639.77	.	AC=2;AF=1.00;AN=2;DB;DP=866;set=Intersection	GT:AD:AF:DP	1/1:2,856:1.00:858
chr19	58421128	rs201944488	C	T	9886.77	.	AC=2;AF=1.00;AN=2;DB;DP=378;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.17;QD=26.22;SOR=1.203;set=HC	GT:AD:AF:DP	1/1:0,377:1.00:377
chr19	58446618	rs62126278	G	A	5627.77	.	AC=1;AF=0.500;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	0/1:102,233:0.70:335
chr19	58453342	rs959231	T	C	9240.77	.	AC=1;AF=0.500;AN=2;DB;DP=505;set=Intersection	GT:AD:AF:DP	0/1:132,365:0.73:497
chr19	58455381	rs257652	C	T	18124.77	.	AC=2;AF=1.00;AN=2;DB;DP=735;set=Intersection	GT:AD:AF:DP	1/1:0,714:1.00:714
chr19	58469892	rs79804234	A	G	748.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.558;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=1.282;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.86;ReadPosRankSum=1.478;SOR=0.584;set=HC	GT:AD:AF:DP	0/1:144,50:0.26:194
chr19	58470137	rs147492862	T	TG	58.73	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:9,4:0.31:13
chr19	58470153	rs77115785	G	A	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.319;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.31;ReadPosRankSum=0.441;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:9,3:0.25:12
chr19	58472948	rs10588188	GCA	G	1332.73	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:89,39:0.30:128
chr19	58472963	rs8102308	T	G	595.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:79,33:0.29:112
chr19	58483709	rs3810128	A	G	144.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:19,9:0.32:28
chr19	58483954	rs11668548	A	G	627.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.280;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=1.529;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.62;ReadPosRankSum=0.090;SOR=0.538;set=HC	GT:AD:AF:DP	0/1:96,40:0.29:136
chr19	58485439	rs257676	C	T	6285.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr19	58490929	rs75971696	T	C	822.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.276;ClippingRankSum=0.000;DB;DP=249;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.39;ReadPosRankSum=0.882;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:186,57:0.23:243
chr19	58491382	rs142503772	G	A	2046.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.003;ClippingRankSum=0.000;DB;DP=474;ExcessHet=3.0103;FS=2.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.35;ReadPosRankSum=-1.200;SOR=0.878;set=HC	GT:AD:AF:DP	0/1:344,126:0.27:470
chr19	58500271	rs11880378	T	G	201.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:26,11:0.30:37
chr19	58511150	rs10451433	C	T	564.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.606;ClippingRankSum=0.000;DB;DP=215;ExcessHet=3.0103;FS=0.623;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.68;ReadPosRankSum=-0.417;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:167,44:0.21:211
chr19	58512228	rs11670666	T	C	737.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:122,49:0.29:171
chr19	58512862	rs45512397	G	C	629.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.229;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=0.711;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.89;ReadPosRankSum=1.718;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:122,40:0.25:162
chr19	58513477	rs4801242	G	A	1023.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.750;ClippingRankSum=0.000;DB;DP=261;ExcessHet=3.0103;FS=2.694;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.01;ReadPosRankSum=-0.048;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:187,68:0.27:255
chr19	58513807	rs4801243	A	C	1222.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.128;ClippingRankSum=0.000;DB;DP=367;ExcessHet=3.0103;FS=5.148;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.36;ReadPosRankSum=1.689;SOR=1.006;set=HC	GT:AD:AF:DP	0/1:285,79:0.22:364
chr19	58513878	rs113843235	A	G	1163.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.461;ClippingRankSum=0.000;DB;DP=327;ExcessHet=3.0103;FS=0.481;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.64;ReadPosRankSum=-1.681;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:246,74:0.23:320
chr19	58514100	.	C	CA	3155.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.463;ClippingRankSum=0.000;DP=546;ExcessHet=3.0103;FS=1.338;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=0.000;QD=5.85;ReadPosRankSum=0.470;SOR=0.831;set=HC	GT:AD:AF:DP	0/1:419,120:0.22:539
chr19	58517213	rs77044963	C	A	92.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.824;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.23;MQRankSum=0.317;QD=1.60;ReadPosRankSum=-0.708;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:44,14:0.24:58
chr19	58520652	rs146263302	G	GT	2005.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.531;ClippingRankSum=0.000;DB;DP=360;ExcessHet=3.0103;FS=0.485;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.67;ReadPosRankSum=0.622;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:272,82:0.23:354
chr19	58549366	rs159870	C	G	1792.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.204;ClippingRankSum=0.000;DB;DP=480;ExcessHet=3.0103;FS=0.608;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.80;ReadPosRankSum=0.446;SOR=0.806;set=HC	GT:AD:AF:DP	0/1:353,119:0.25:472
chr19	58549593	rs2241406	C	G	5283.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr19	58570697	rs7256947	G	T	840.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.621;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=11.216;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=0.656;QD=14.50;ReadPosRankSum=-0.853;SOR=0.462;set=HC	GT:AD:AF:DP	0/1:16,42:0.72:58
chr19	58570714	rs146738840	A	AGGCCG	564.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.671;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=4.548;MLEAC=1;MLEAF=0.500;MQ=60.51;MQRankSum=1.182;QD=23.53;ReadPosRankSum=-2.417;SOR=0.154;set=HC	GT:AD:AF:DP	0/1:9,15:0.62:24
chr19	58570794	rs8110363	C	T	230.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:6,11:0.65:17
chr19	58571615	rs151015554	GGTGCCCGGCCTCTACTC	G	2986.73	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:28,80:0.74:108
chr19	58572979	rs1469087	G	A	4946.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:47,209:0.82:256
chr19	58578578	rs2229375	C	T	13193.77	.	AC=1;AF=0.500;AN=2;DB;DP=802;set=Intersection	GT:AD:AF:DP	0/1:210,572:0.73:782
chr19	58579923	rs2229379	A	G	2346.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:24,92:0.79:116
chr19	58598670	rs2287837	C	T	916.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:205,68:0.25:273
chr19	58598784	rs2260914	A	G	4306.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr19	58600048	rs1529329	C	T	492.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.614;ClippingRankSum=0.000;DB;DP=238;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.11;ReadPosRankSum=-0.531;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:188,46:0.20:234
chr19	58601221	rs2547354	T	C	9290.77	.	AC=1;AF=0.500;AN=2;DB;DP=553;set=Intersection	GT:AD:AF:DP	0/1:136,408:0.75:544
chr19	58629830	rs8108978	A	T	1823.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.57;SOR=1.919;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr19	58629836	rs200243319	G	GCGGGGC	682.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.612;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.51;ReadPosRankSum=-1.486;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:17,18:0.51:35
chr19	58629878	rs8109275	G	T	970.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr19	58640964	rs45589034	G	T	1772.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:18,67:0.79:85
chr19	58718269	rs7256349	G	A	1418.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.021;ClippingRankSum=0.000;DB;DP=363;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=-0.048;QD=3.94;ReadPosRankSum=1.572;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:266,94:0.26:360
chr19	58718360	rs59557917	A	AG	4850.73	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr19	58722991	rs113293561	G	A	9120.77	.	AC=1;AF=0.500;AN=2;DB;DP=534;set=Intersection	GT:AD:AF:DP	0/1:146,384:0.72:530
chr19	58757870	rs12972443	G	C	672.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.361;ClippingRankSum=0.000;DB;DP=233;ExcessHet=3.0103;FS=0.603;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.95;ReadPosRankSum=-0.781;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:181,47:0.21:228
chr19	58774071	rs260462	A	G	611.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.314;ClippingRankSum=0.000;DB;DP=205;ExcessHet=3.0103;FS=0.616;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.04;ReadPosRankSum=-0.263;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:155,46:0.23:201
chr19	58790359	rs11666156	C	A	843.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:97,41:0.30:138
chr19	58790675	rs437229	T	C	1323.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.791;ClippingRankSum=0.000;DB;DP=411;ExcessHet=3.0103;FS=0.439;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.33;ReadPosRankSum=0.356;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:302,96:0.24:398
chr19	58790713	rs374431	G	C	934.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.167;ClippingRankSum=0.000;DB;DP=225;ExcessHet=3.0103;FS=0.659;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.25;ReadPosRankSum=-0.816;SOR=0.581;set=HC	GT:AD:AF:DP	0/1:166,54:0.25:220
chr19	58791213	rs260500	C	A	48.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.865;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.33;ReadPosRankSum=-1.254;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:129,20:0.13:149
chr19	58797344	rs400733	A	C	198.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.903;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=3.981;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.05;ReadPosRankSum=0.731;SOR=1.298;set=HC	GT:AD:AF:DP	0/1:81,16:0.16:97
chr19	58797583	rs59553565	C	CT	1562.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.057;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.31;ReadPosRankSum=0.743;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:129,59:0.31:188
chr19	58850341	rs59054150	G	C	14003.77	.	AC=1;AF=0.500;AN=2;DB;DP=818;set=Intersection	GT:AD:AF:DP	0/1:212,600:0.74:812
chr19	58850756	rs16988668	G	C	3647.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:32,143:0.82:175
chr19	58858231	rs3214663	GC	G	1165.73	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:127,46:0.27:173
chr19	58858614	rs11345647	AG	A	5958.73	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr19	58858676	rs1265957	A	G	649.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.673;ClippingRankSum=0.000;DB;DP=332;ExcessHet=3.0103;FS=1.088;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=-0.474;QD=1.97;ReadPosRankSum=0.670;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:267,62:0.19:329
chr19	58859055	rs144085420	C	CCCCAGGCCGCG	62.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.718;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=7.539;MLEAC=1;MLEAF=0.500;MQ=60.92;MQRankSum=4.069;QD=1.00;ReadPosRankSum=0.494;SOR=2.485;set=HC	GT:AD:AF:DP	0/1:56,7:0.11:63
chr19	58859066	rs1265959	A	G	72.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.368;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=7.550;MLEAC=1;MLEAF=0.500;MQ=60.82;MQRankSum=4.138;QD=1.12;ReadPosRankSum=1.648;SOR=2.546;set=HC	GT:AD:AF:DP	0/1:58,7:0.11:65
chr19	58863161	rs10164322	C	CT	135.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.116;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=2.677;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.30;ReadPosRankSum=0.195;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:40,19:0.32:59
chr19	58864479	rs893184	T	C	1819.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.810;ClippingRankSum=0.000;DB;DP=431;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.28;ReadPosRankSum=-0.487;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:309,116:0.27:425
chr19	58864867	rs2375470	A	G	1913.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.481;ClippingRankSum=0.000;DB;DP=220;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.74;ReadPosRankSum=1.605;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:160,59:0.27:219
chr19	58864879	rs3833872	T	TG	1856.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.553;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.57;ReadPosRankSum=0.745;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:138,56:0.29:194
chr19	58868480	rs12609654	G	T	2494.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.893;ClippingRankSum=0.000;DB;DP=682;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.71;ReadPosRankSum=-1.143;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:504,169:0.25:673
chr19	58869515	rs6146577	GTCCCC	G	2725.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.292;ClippingRankSum=0.000;DB;DP=404;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=2.621;QD=6.94;ReadPosRankSum=1.227;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:304,89:0.23:393
chr19	58879965	rs7255489	A	G	1143.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:190,70:0.27:260
chr19	58879976	rs7255596	C	T	1132.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:170,68:0.29:238
chr19	58898436	rs731835	T	C	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.838;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.31;ReadPosRankSum=0.319;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:9,3:0.25:12
chr19	58907700	rs112710702	G	A	5240.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:72,233:0.76:305
chr19	58908150	rs13343526	C	G	988.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.657;ClippingRankSum=0.000;DB;DP=429;ExcessHet=3.0103;FS=3.096;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.34;ReadPosRankSum=1.998;SOR=0.944;set=HC	GT:AD:AF:DP	0/1:333,90:0.21:423
chr19	58945962	rs9941466	C	T	1155.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.225;ClippingRankSum=0.000;DB;DP=350;ExcessHet=3.0103;FS=2.172;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.36;ReadPosRankSum=0.521;SOR=0.861;set=HC	GT:AD:AF:DP	0/1:266,78:0.23:344
chr19	58982384	rs10418774	A	G	13796.77	.	AC=2;AF=1.00;AN=2;DB;DP=519;set=Intersection	GT:AD:AF:DP	1/1:2,509:1.00:511
chr19	58991723	rs34732619	C	T	12914.77	.	AC=1;AF=0.500;AN=2;DB;DP=739;set=Intersection	GT:AD:AF:DP	0/1:166,559:0.77:725
chr19	59010439	rs80330258	A	G	17369.77	.	AC=1;AF=0.500;AN=2;DB;DP=989;set=Intersection	GT:AD:AF:DP	0/1:226,748:0.77:974
chr19	59010593	rs4801274	A	G	1915.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.627;ClippingRankSum=0.000;DB;DP=648;ExcessHet=3.0103;FS=0.659;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.531;QD=3.02;ReadPosRankSum=2.112;SOR=0.585;set=HC	GT:AD:AF:DP	0/1:497,138:0.22:635
chr19	59010819	rs2278497	G	T	805.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.049;ClippingRankSum=0.000;DB;DP=228;ExcessHet=3.0103;FS=0.623;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.65;ReadPosRankSum=-1.227;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:169,52:0.24:221
chr19	59022682	rs113904799	G	A	3236.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:56,143:0.72:199
chr19	59025685	rs4801602	A	C	679.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.093;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=5.269;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.05;ReadPosRankSum=-0.150;SOR=0.386;set=HC	GT:AD:AF:DP	0/1:120,48:0.29:168
chr19	59056991	rs77659740	C	T	2588.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:35,106:0.75:141
chr19	59061357	rs3816328	C	T	12609.77	.	AC=1;AF=0.500;AN=2;DB;DP=724;set=Intersection	GT:AD:AF:DP	0/1:183,537:0.75:720
chr19	59067623	rs2305119	C	T	3584.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:52,159:0.75:211
chr19	59073613	rs73562704	A	G	14438.77	.	AC=1;AF=0.500;AN=2;DB;DP=897;set=Intersection	GT:AD:AF:DP	0/1:245,645:0.72:890
chr19	59074429	rs2228162	C	T	5793.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:66,252:0.79:318
chr19	59074653	rs4756	T	C	5916.77	.	AC=1;AF=0.500;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	0/1:88,246:0.74:334
chr19	59082368	rs3752111	C	T	21665.77	.	AC=1;AF=0.500;AN=2;DB;DP=1279;set=Intersection	GT:AD:AF:DP	0/1:308,965:0.76:1273
chr20	76962	rs6111385	T	C	25729.77	.	AC=2;AF=1.00;AN=2;DB;DP=982;set=Intersection	GT:AD:AF:DP	1/1:0,979:1.00:979
chr20	77013	rs45528036	C	T	8783.77	.	AC=1;AF=0.500;AN=2;DB;DP=910;set=Intersection	GT:AD:AF:DP	0/1:473,432:0.48:905
chr20	126155	rs11467497	GCAAA	G	15787.73	.	AC=1;AF=0.500;AN=2;DB;DP=926;set=Intersection	GT:AD:AF:DP	0/1:477,413:0.46:890
chr20	126310	rs11467417	ACC	A	16522.73	.	AC=1;AF=0.500;AN=2;DB;DP=1043;set=Intersection	GT:AD:AF:DP	0/1:553,444:0.45:997
chr20	138004	rs6055356	G	C	453.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr20	138178	rs3216039	GC	G	5730.73	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr20	139362	rs6055460	G	A	2764.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr20	139745	rs4142304	T	C	2172.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr20	168466	rs4813042	T	A	4400.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr20	168728	rs4813043	T	A	8884.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,327:1.00:327
chr20	207889	rs2298149	G	A	1381.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:76,65:0.46:141
chr20	208168	rs6110460	T	C	530.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:34,24:0.41:58
chr20	210061	rs13045643	G	A	2800.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:166,134:0.45:300
chr20	238435	rs66489228	CTGGTCT	C	7625.73	.	AC=1;AF=0.500;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	0/1:218,200:0.48:418
chr20	238507	rs373225	A	C	2473.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:125,115:0.48:240
chr20	238530	rs412143	T	G	3193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.296;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=2.822;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=1.855;QD=17.26;ReadPosRankSum=1.065;SOR=0.499;set=HC	GT:AD:AF:DP	0/1:98,87:0.47:185
chr20	238540	rs416360	C	T	3033.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.075;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=5.281;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=1.762;QD=19.32;ReadPosRankSum=0.306;SOR=0.387;set=HC	GT:AD:AF:DP	0/1:79,78:0.50:157
chr20	239664	rs420525	T	C	669.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:37,30:0.45:67
chr20	239688	rs399083	G	A	1935.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.463;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.98;ReadPosRankSum=-0.690;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:53,49:0.48:102
chr20	239697	rs399094	G	C	2084.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.405;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.95;ReadPosRankSum=0.326;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:65,58:0.47:123
chr20	252084	.	TACACACACACAC	T	587	.	AC=1;AF=0.500;AN=2;BRF=0.32;FR=0.5000;HP=2;HapScore=2;MGOF=18;MMLQ=21;MQ=60.0;NF=2;NR=10;PP=587;QD=49.1666666667;SC=TACACAAGCATACACACACAC;SbPval=0.28;Source=Platypus;TC=35;TCF=3;TCR=32;TR=12;WE=252107;WS=252074;set=Platypus	GT:AD:AF:DP	0/1:23,12:0.34:35
chr20	256573	rs6075567	A	G	4843.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:2,178:0.99:180
chr20	256727	rs3827147	T	A	4013.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:1,150:0.99:151
chr20	256760	rs56774790	G	GA	1873.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.849;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=0.784;MLEAC=1;MLEAF=0.500;MQ=64.28;MQRankSum=8.806;QD=18.19;ReadPosRankSum=1.855;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:53,50:0.49:103
chr20	256762	.	G	A	2100	.	AC=1;AF=0.500;AN=2;BRF=0.33;FR=0.5000;HP=1;HapScore=4;MGOF=24;MMLQ=29;MQ=64.7;NF=11;NR=29;PP=2100;QD=53.3692803137;SC=AGAAGGGAGAGGCAAATGGCC;SbPval=0.59;Source=Platypus;TC=88;TCF=25;TCR=63;TR=40;WE=256771;WS=256752;set=Platypus	GT:AD:AF:DP	1/0:48,40:0.45:88
chr20	256763	rs61354763	G	C	1883.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.890;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=0.784;MLEAC=1;MLEAF=0.500;MQ=64.36;MQRankSum=8.806;QD=18.29;ReadPosRankSum=1.736;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:53,50:0.49:103
chr20	256763	.	G	GC	2070	.	AC=1;AF=0.500;AN=2;BRF=0.33;FR=0.5000;HP=1;HapScore=4;MGOF=24;MMLQ=28;MQ=64.6;NF=1;NR=30;PP=2070;QD=68.8337342087;SC=GAAGGGAGAGGCAAATGGCCC;SbPval=0.89;Source=Platypus;TC=68;TCF=5;TCR=63;TR=31;WE=256771;WS=256752;set=Platypus	GT:AD:AF:DP	1/0:37,31:0.46:68
chr20	257320	rs2277779	G	A	2522.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:2,89:0.98:91
chr20	257733	rs2277781	A	G	11557.77	.	AC=2;AF=1.00;AN=2;DB;DP=448;set=Intersection	GT:AD:AF:DP	1/1:0,439:1.00:439
chr20	257803	rs6075583	G	C	2974.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.136;ClippingRankSum=0.000;DB;DP=321;ExcessHet=3.0103;FS=1.869;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.41;ReadPosRankSum=-0.408;SOR=0.827;set=HC	GT:AD:AF:DP	0/1:167,149:0.47:316
chr20	257812	rs6046375	T	C	10406.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.39;SOR=0.958;set=HC	GT:AD:AF:DP	1/1:0,286:1.00:286
chr20	258865	rs6046492	A	G	6876.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr20	259156	rs6035505	G	A	1309.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:41,53:0.56:94
chr20	259818	rs6035541	G	A	3735.77	.	AC=1;AF=0.500;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	0/1:189,179:0.49:368
chr20	259969	rs7271033	G	C	4909.77	.	AC=1;AF=0.500;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	0/1:215,243:0.53:458
chr20	264498	rs6137055	A	C	727.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:24,27:0.53:51
chr20	270414	rs11478105	TC	T	2599.73	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:91,85:0.48:176
chr20	270428	rs6035784	C	T	1482.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:78,68:0.47:146
chr20	271204	rs11475281	AT	A	143.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.785;ClippingRankSum=0.000;DB;DP=298;ExcessHet=3.0103;FS=5.039;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=-0.841;QD=0.53;ReadPosRankSum=1.570;SOR=0.854;set=HC	GT:AD:AF:DP	0/1:204,69:0.25:273
chr20	271225	rs3835237	T	TTTA	3181.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.216;ClippingRankSum=0.000;DB;DP=331;ExcessHet=3.0103;FS=2.671;MLEAC=1;MLEAF=0.500;MQ=60.81;MQRankSum=0.000;QD=9.94;ReadPosRankSum=1.640;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:181,139:0.43:320
chr20	278515	rs2223665	T	C	718.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:34,31:0.48:65
chr20	278687	rs5839847	CCGG	C	6862.73	.	AC=2;AF=1.00;AN=2;DB;DP=167;MQ=60.19;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr20	278806	rs1057189	C	T	6732.77	.	AC=1;AF=0.500;AN=2;DB;DP=587;set=Intersection	GT:AD:AF:DP	0/1:273,309:0.53:582
chr20	279483	rs1046560	T	C	4885.77	.	AC=1;AF=0.500;AN=2;DB;DP=527;set=Intersection	GT:AD:AF:DP	0/1:285,239:0.46:524
chr20	334317	rs5839855	TC	T	12559.73	.	AC=1;AF=0.500;AN=2;DB;DP=1011;set=Intersection	GT:AD:AF:DP	0/1:478,495:0.51:973
chr20	371972	rs6051637	T	C	3015.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:116,133:0.53:249
chr20	377226	rs6115830	C	T	5058.77	.	AC=1;AF=0.500;AN=2;DB;DP=538;set=Intersection	GT:AD:AF:DP	0/1:289,244:0.46:533
chr20	389456	rs3746792	C	T	3120.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:166,153:0.48:319
chr20	391170	rs7059	C	T	2552.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:144,127:0.47:271
chr20	397928	rs6115906	C	T	4354.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr20	398039	rs67707964	TTG	T	60.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.627;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=4.028;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.27;ReadPosRankSum=0.829;SOR=1.751;set=HC	GT:AD:AF:DP	0/1:40,8:0.17:48
chr20	398278	rs11698154	G	T	5107.77	.	AC=1;AF=0.500;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	0/1:222,223:0.50:445
chr20	442937	rs708978	C	G	844.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr20	470678	.	C	CT	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.429;ClippingRankSum=-0.000;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.12;ReadPosRankSum=-1.775;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:9,6:0.40:15
chr20	480602	rs199709718	CA	C	86.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.121;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=3.256;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=1.097;QD=2.28;ReadPosRankSum=1.801;SOR=1.473;set=HC	GT:AD:AF:DP	0/1:23,15:0.39:38
chr20	488930	rs74119	C	T	7911.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:1,261:1.00:262
chr20	590456	rs282164	A	G	6429.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr20	590542	rs2754502	CG	GC	13308.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chr20	590900	rs183989	T	C	1276.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.60;SOR=0.866;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr20	656057	rs6053839	C	T	677.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:20,30:0.60:50
chr20	656407	rs146589074	T	TGGC	711.73	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:16,19:0.54:35
chr20	741847	rs910857	A	G	3166.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr20	742237	rs3746801	G	A	2039.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.441;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=6.160;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.60;ReadPosRankSum=-0.553;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:47,52:0.53:99
chr20	742237	.	GGT	AGC	1987	.	AC=1;AF=0.500;AN=2;BRF=0.3;FR=0.5000;HP=2;HapScore=2;MGOF=1;MMLQ=24;MQ=60.0;NF=37;NR=9;PP=1987;QD=44.3579972796;SC=TTCCCGGGAGGGTCCCACAGA;SbPval=0.19;Source=Platypus;TC=96;TCF=83;TCR=13;TR=46;WE=742247;WS=742235;set=Platypus	GT:AD:AF:DP	1/0:50,46:0.48:96
chr20	742239	rs6054589	T	C	2039.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.412;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=2.347;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.00;ReadPosRankSum=-0.253;SOR=0.414;set=HC	GT:AD:AF:DP	0/1:49,53:0.52:102
chr20	744032	rs8122333	A	T	1492.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:47,65:0.58:112
chr20	744308	rs3746802	T	C	2331.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:188,123:0.40:311
chr20	744382	rs3746803	G	A	2666.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:169,130:0.43:299
chr20	744415	rs3746804	G	A	2798.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:166,139:0.46:305
chr20	744662	rs3833341	A	ACAGGTCAAT	2435.73	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr20	746098	rs3746808	G	A	3911.77	.	AC=1;AF=0.500;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	0/1:223,187:0.46:410
chr20	746423	rs11467076	GTATCTGCCC	G	5431.73	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:109,138:0.56:247
chr20	825678	rs538094	T	C	22734.77	.	AC=2;AF=1.00;AN=2;DB;DP=825;set=Intersection	GT:AD:AF:DP	1/1:2,804:1.00:806
chr20	826492	rs2282050	G	C	909.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:45,37:0.45:82
chr20	854940	rs944110	T	C	2860.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:172,142:0.45:314
chr20	865664	rs55955946	TC	T	3032.73	.	AC=1;AF=0.500;AN=2;DB;DP=262;MQ=60.04;set=Intersection	GT:AD:AF:DP	0/1:144,113:0.44:257
chr20	982922	rs149154047	C	T	303.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:12,14:0.54:26
chr20	1099329	rs2072962	A	G	2455.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr20	1099523	rs1803415	T	G	22060.77	.	AC=2;AF=1.00;AN=2;DB;DP=810;set=Intersection	GT:AD:AF:DP	1/1:1,808:1.00:809
chr20	1099666	rs2072961	G	C	4204.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr20	1108262	rs6040024	C	G	2955.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr20	1115529	rs4813939	A	G	9205.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:0,350:1.00:350
chr20	1184045	rs11477838	TA	T	74.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.092;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=1.596;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.000;QD=1.53;ReadPosRankSum=2.464;SOR=0.285;set=HC	GT:AD:AF:DP	0/1:35,14:0.29:49
chr20	1210647	rs450739	T	C	4567.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr20	1212286	rs62186522	C	A	594.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:29,27:0.48:56
chr20	1214814	rs203534	A	C	3749.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr20	1223234	rs17779421	A	G	780.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:37,31:0.46:68
chr20	1224774	rs17717241	A	C	5224.77	.	AC=1;AF=0.500;AN=2;DB;DP=569;set=Intersection	GT:AD:AF:DP	0/1:306,256:0.46:562
chr20	1277157	rs6109320	G	C	5007.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:1,162:0.99:163
chr20	1286711	rs4813082	T	C	3574.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr20	1291076	rs1048628	G	C	1422.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:35,61:0.64:96
chr20	1291393	rs2273956	A	G	1325.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:56,51:0.48:107
chr20	1292964	rs4814110	T	C	12700.77	.	AC=2;AF=1.00;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	1/1:0,455:1.00:455
chr20	1293008	rs2273958	C	T	8457.77	.	AC=1;AF=0.500;AN=2;DB;DP=770;set=Intersection	GT:AD:AF:DP	0/1:366,400:0.52:766
chr20	1293046	rs1048621	G	A	8595.77	.	AC=1;AF=0.500;AN=2;DB;DP=899;set=Intersection	GT:AD:AF:DP	0/1:477,416:0.47:893
chr20	1293247	rs2273959	C	T	9429.77	.	AC=1;AF=0.500;AN=2;DB;DP=1053;set=Intersection	GT:AD:AF:DP	0/1:580,464:0.44:1044
chr20	1298698	rs75445260	A	G	656.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:26,31:0.54:57
chr20	1298794	rs6078610	G	A	5080.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr20	1298954	rs73579382	A	G	2196.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:146,109:0.43:255
chr20	1300433	rs11087032	C	T	134.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:17,7:0.29:24
chr20	1350672	rs6041749	T	C	4119.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr20	1350709	rs8392	T	C	2561.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:123,123:0.50:246
chr20	1356261	rs6074549	G	C	21044.77	.	AC=2;AF=1.00;AN=2;DB;DP=788;set=Intersection	GT:AD:AF:DP	1/1:0,777:1.00:777
chr20	1424303	rs6891	G	A	868.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:43,42:0.49:85
chr20	1426393	rs9575	C	T	1716.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:86,82:0.49:168
chr20	1435905	rs6042377	T	C	2172.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr20	1457045	rs6042499	T	G	713.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:24,29:0.55:53
chr20	1457910	rs6135048	C	A	3632.77	.	AC=1;AF=0.500;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	0/1:207,179:0.46:386
chr20	1458159	rs6135050	A	G	304.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:19,13:0.41:32
chr20	1459060	rs6042507	T	G	8334.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr20	1460272	rs2873565	T	C	1005.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:64,45:0.41:109
chr20	1520883	rs2256520	T	C	6495.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:1,244:1.00:245
chr20	1532595	rs2249317	T	C	15637.77	.	AC=2;AF=1.00;AN=2;DB;DP=602;set=Intersection	GT:AD:AF:DP	1/1:0,592:1.00:592
chr20	1538379	rs73604175	C	T	761.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:67,44:0.40:111
chr20	1546742	rs2243602	T	A	11661.77	.	AC=2;AF=1.00;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	1/1:0,424:1.00:424
chr20	1546911	rs2243603	C	G	9072.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr20	1551485	rs2254458	C	T	11189.77	.	AC=2;AF=1.00;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	1/1:0,412:1.00:412
chr20	1552430	rs2253427	T	C	23201.77	.	AC=2;AF=1.00;AN=2;DB;DP=851;set=Intersection	GT:AD:AF:DP	1/1:0,850:1.00:850
chr20	1585397	rs148754551	T	C	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=38.39;MQRankSum=-1.834;QD=8.80;ReadPosRankSum=-0.842;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chr20	1610939	rs3746722	G	A	989.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:42,45:0.52:87
chr20	1615959	rs9305125	T	C	3535.77	.	AC=1;AF=0.500;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	0/1:239,168:0.41:407
chr20	1616206	rs6043409	A	G	3260.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:118,141:0.54:259
chr20	1616816	rs71964196	GGT	G	6170.73	.	AC=1;AF=0.500;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	0/1:207,170:0.45:377
chr20	1617069	rs2277761	A	G	2724.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:120,123:0.51:243
chr20	1629547	rs6110775	T	C	503.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:24,20:0.45:44
chr20	1629604	rs6074948	A	C	1193.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:73,57:0.44:130
chr20	1629906	rs6079967	C	T	3999.77	.	AC=1;AF=0.500;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	0/1:178,177:0.50:355
chr20	2082732	rs6112857	C	G	2409.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr20	2124603	rs61067536	TC	T	4866.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.806;ClippingRankSum=0.000;DB;DP=392;ExcessHet=3.0103;FS=0.395;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.26;ReadPosRankSum=-0.446;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:212,155:0.42:367
chr20	2124616	rs34364101	TC	T	72.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.040;ClippingRankSum=0.000;DB;DP=307;ExcessHet=3.0103;FS=7.983;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.26;ReadPosRankSum=2.951;SOR=1.287;set=HC	GT:AD:AF:DP	0/1:224,60:0.21:284
chr20	2290333	rs214803	C	A	3034.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr20	2290532	rs214804	T	G	4771.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr20	2290547	rs214805	C	T	3859.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr20	2297790	rs214814	G	A	806.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:64,45:0.41:109
chr20	2315929	rs2076406	C	T	1078.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:39,50:0.56:89
chr20	2321105	rs214830	G	C	11997.77	.	AC=2;AF=1.00;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	1/1:0,432:1.00:432
chr20	2321363	rs214831	A	G	4205.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr20	2321665	rs214832	T	C	4816.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:3,180:0.98:183
chr20	2361684	rs2422753	C	T	3523.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr20	2375262	rs2076405	A	G	3465.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr20	2380396	rs2076404	G	A	2454.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.68;SOR=0.929;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr20	2411731	rs71329366	CAG	C	3091.73	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:78,86:0.52:164
chr20	2413125	rs2076653	CC	TT	1453.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;JOINED;set=Intersection	GT:AD:AF:DP	0/1:74,70:0.49:144
chr20	2413320	rs2076652	T	C	2164.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:167,114:0.41:281
chr20	2464112	rs61740142	T	C	10764.77	.	AC=1;AF=0.500;AN=2;DB;DP=922;set=Intersection	GT:AD:AF:DP	0/1:424,487:0.53:911
chr20	2473587	rs41308639	A	T	1712.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:107,77:0.42:184
chr20	2474081	rs4815270	T	C	7332.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr20	2517377	rs6036860	A	G	1926.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:138,98:0.42:236
chr20	2517432	rs6036861	T	C	713.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:73,41:0.36:114
chr20	2517448	rs6036862	G	A	597.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:59,31:0.34:90
chr20	2517825	rs6114817	T	C	1208.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:49,55:0.53:104
chr20	2518151	rs6049838	T	C	1744.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:97,89:0.48:186
chr20	2539387	rs6050063	G	A	4051.77	.	AC=1;AF=0.500;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	0/1:223,204:0.48:427
chr20	2542747	rs4815323	G	T	515.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:33,24:0.42:57
chr20	2552805	rs1883981	T	A	1648.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.495;ClippingRankSum=0.000;DB;DP=301;ExcessHet=3.0103;FS=0.427;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.65;ReadPosRankSum=2.302;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:164,128:0.44:292
chr20	2552926	rs1883980	T	C	1782.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:91,87:0.49:178
chr20	2559778	rs6083735	G	C	2918.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:156,140:0.47:296
chr20	2572816	rs6050433	T	G	1153.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.168;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=6.300;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.64;ReadPosRankSum=-1.500;SOR=0.110;set=HC	GT:AD:AF:DP	0/1:15,30:0.67:45
chr20	2572822	rs7269262	T	G	1181.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.511;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=3.346;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.69;ReadPosRankSum=-0.798;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:16,30:0.65:46
chr20	2593006	rs1015159	A	G	1449.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:70,68:0.49:138
chr20	2596969	rs4621228	T	A	2846.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:116,129:0.53:245
chr20	2597073	rs4544508	T	G	1618.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.214;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.12;ReadPosRankSum=-1.675;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:80,80:0.50:160
chr20	2597978	rs4815428	G	A	5393.77	.	AC=1;AF=0.500;AN=2;DB;DP=587;set=Intersection	GT:AD:AF:DP	0/1:324,253:0.44:577
chr20	2598019	rs6083866	C	T	4460.77	.	AC=1;AF=0.500;AN=2;DB;DP=474;set=Intersection	GT:AD:AF:DP	0/1:253,213:0.46:466
chr20	2616556	rs910271	T	C	2120.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:120,105:0.47:225
chr20	2616679	rs2422808	C	G	3140.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:190,157:0.45:347
chr20	2617993	rs6083914	C	T	307.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.127;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=2.265;QD=4.66;ReadPosRankSum=-0.553;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:47,19:0.29:66
chr20	2618033	rs59750367	C	CAAAAA	972.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.591;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=10.834;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.69;ReadPosRankSum=-1.871;SOR=2.226;set=HC	GT:AD:AF:DP	0/1:77,35:0.31:112
chr20	2618094	rs6037181	G	A	2508.77	.	AC=1;AF=0.500;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	0/1:212,128:0.38:340
chr20	2618140	rs6083915	T	C	3653.77	.	AC=1;AF=0.500;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	0/1:240,184:0.43:424
chr20	2618308	rs6050771	C	T	1362.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:57,61:0.52:118
chr20	2621998	rs6050798	T	C	1976.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:101,99:0.49:200
chr20	2633234	rs6115305	T	G	631.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.167;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=31.59;ReadPosRankSum=-2.085;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:4,16:0.80:20
chr20	2633244	rs4815467	A	C	657.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.274;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.60;ReadPosRankSum=-0.666;SOR=0.420;set=HC	GT:AD:AF:DP	0/1:6,17:0.74:23
chr20	2633325	rs150527448	GGGGCGC	G	1089.73	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:49,31:0.39:80
chr20	2633378	rs149713688	A	AGAGCCTGGGCCT	1582.73	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:67,38:0.36:105
chr20	2633404	rs6115307	C	G	1079.73	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:65,38:0.37:103
chr20	2633936	rs2073194	T	C	3380.77	.	AC=1;AF=0.500;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	0/1:172,162:0.49:334
chr20	2637071	rs8958	T	C	2176.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:121,108:0.47:229
chr20	2644407	rs2073193	C	G	3049.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:163,139:0.46:302
chr20	2673644	.	GGGCGCT	G	151.73	.	AC=1;AF=0.500;AN=2;DP=12;set=Intersection	GT:AD:AF:DP	0/1:7,5:0.42:12
chr20	2732934	rs60014511	G	A	364.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:28,20:0.42:48
chr20	2777459	rs1985525	T	C	3398.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr20	2777828	rs742707	G	T	7019.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr20	2778075	rs127076	T	C	4637.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr20	2779257	rs215541	G	C	4012.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr20	2797015	rs215561	G	A	7700.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr20	2797137	rs11469869	GCC	G,GC	2385.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.183;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=23.62;ReadPosRankSum=0.647;SOR=0.810;set=HC	GT:AD:AF:DP	1/2:6,27,68:0.27,0.67:101
chr20	2816821	rs2274669	C	T	856.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:36,36:0.50:72
chr20	2840773	rs3818605	C	T	3997.77	.	AC=1;AF=0.500;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	0/1:165,187:0.53:352
chr20	2842685	rs6051449	A	C	7866.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr20	2843727	rs150495430	A	G	3549.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:152,163:0.52:315
chr20	2844057	rs183700947	G	A	5753.77	.	AC=1;AF=0.500;AN=2;DB;DP=595;set=Intersection	GT:AD:AF:DP	0/1:314,269:0.46:583
chr20	2845130	rs730819	G	A	11858.77	.	AC=2;AF=1.00;AN=2;DB;DP=453;set=Intersection	GT:AD:AF:DP	1/1:0,447:1.00:447
chr20	2846289	rs677344	G	A	464.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr20	2904143	rs633284	A	T	803.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.36;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr20	2967351	.	C	A	3405.77	.	AC=1;AF=0.500;AN=2;DP=427;set=Intersection	GT:AD:AF:DP	0/1:251,173:0.41:424
chr20	2996423	rs1178015	T	A	4321.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr20	2996497	rs1178016	C	T	8440.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:0,318:1.00:318
chr20	2996589	rs1178017	G	T	3381.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:2,145:0.99:147
chr20	3002889	rs544090	A	C	9872.77	.	AC=2;AF=1.00;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	1/1:2,345:0.99:347
chr20	3005413	rs568235	G	A	1049.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr20	3007193	rs6138982	T	A	1095.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:54,49:0.48:103
chr20	3007228	rs571058	G	A	5307.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr20	3007492	rs599538	T	C	5383.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr20	3007694	rs10668644	A	AGGT	3569.73	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr20	3025107	rs6051545	C	T	5576.77	.	AC=1;AF=0.500;AN=2;DB;DP=544;set=Intersection	GT:AD:AF:DP	0/1:282,261:0.48:543
chr20	3026238	rs6138994	G	T	1464.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:98,72:0.42:170
chr20	3026345	rs16996832	A	AGCCCC	2737.73	.	AC=1;AF=0.500;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	0/1:275,83:0.23:358
chr20	3026415	rs8184100	C	T	4401.77	.	AC=1;AF=0.500;AN=2;DB;DP=547;set=Intersection	GT:AD:AF:DP	0/1:322,223:0.41:545
chr20	3026531	rs16988242	A	C	1741.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:96,88:0.48:184
chr20	3027220	rs2277757	G	A	1210.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:42,55:0.57:97
chr20	3028489	rs144394625	G	A	3114.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:177,152:0.46:329
chr20	3063587	rs200820983	G	GC	536.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr20	3090848	rs708973	T	G	1407.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:71,68:0.49:139
chr20	3147024	rs7260750	G	A	4368.77	.	AC=1;AF=0.500;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	0/1:169,201:0.54:370
chr20	3147762	rs6051612	A	G	6429.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr20	3185123	rs11697186	A	T	4030.77	.	AC=1;AF=0.500;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	0/1:215,186:0.46:401
chr20	3193842	rs1127354	C	A	3489.77	.	AC=1;AF=0.500;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	0/1:195,173:0.47:368
chr20	3193978	rs8362	G	A	2098.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:153,103:0.40:256
chr20	3199373	rs2422861	G	A	2407.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr20	3203950	rs2236206	T	A	3183.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:127,152:0.54:279
chr20	3204084	rs9101	G	A	3413.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:158,172:0.52:330
chr20	3209371	rs2281575	G	A	6283.77	.	AC=1;AF=0.500;AN=2;DB;DP=485;set=Intersection	GT:AD:AF:DP	0/1:199,280:0.58:479
chr20	3210692	rs6139039	A	G	497.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:20,21:0.51:41
chr20	3211064	rs3810561	A	C	1840.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr20	3211719	rs3803953	T	G	22299.77	.	AC=2;AF=1.00;AN=2;DB;DP=799;set=Intersection	GT:AD:AF:DP	1/1:0,791:1.00:791
chr20	3214020	rs2144771	G	T	4934.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr20	3214819	rs3827075	T	G	6497.77	.	AC=1;AF=0.500;AN=2;DB;DP=697;set=Intersection	GT:AD:AF:DP	0/1:363,326:0.47:689
chr20	3215049	rs3842433	T	TCCAGCCC	1157.73	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:35,31:0.47:66
chr20	3215548	rs3803957	C	A	6063.77	.	AC=1;AF=0.500;AN=2;DB;DP=608;set=Intersection	GT:AD:AF:DP	0/1:302,297:0.50:599
chr20	3218355	rs3827076	C	G	2783.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:94,110:0.54:204
chr20	3218634	rs3810562	G	C	3850.77	.	AC=1;AF=0.500;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	0/1:160,187:0.54:347
chr20	3219692	rs6084314	C	T	2042.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:116,101:0.47:217
chr20	3219894	rs6107260	A	G	1069.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:72,52:0.42:124
chr20	3236015	rs1569942	A	G	5451.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr20	3245276	rs6051694	T	C	386.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:24,20:0.45:44
chr20	3275377	rs2281506	G	C	1202.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:58,60:0.51:118
chr20	3285126	rs2254916	A	T	4767.77	.	AC=1;AF=0.500;AN=2;DB;DP=473;set=Intersection	GT:AD:AF:DP	0/1:239,231:0.49:470
chr20	3285140	rs2422864	T	C	11700.77	.	AC=2;AF=1.00;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	1/1:0,430:1.00:430
chr20	3298881	rs59462924	CAA	C	454.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.536;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=3.695;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.23;ReadPosRankSum=-1.687;SOR=1.519;set=HC	GT:AD:AF:DP	0/1:46,27:0.37:73
chr20	3311438	.	C	CT	361.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.547;ClippingRankSum=0.000;DP=121;ExcessHet=3.0103;FS=1.019;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.971;QD=5.17;ReadPosRankSum=1.357;SOR=0.499;set=HC	GT:AD:AF:DP	0/1:36,34:0.49:70
chr20	3355567	rs2208030	T	C	1407.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:55,64:0.54:119
chr20	3521072	rs117036387	A	G	1403.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:57,63:0.53:120
chr20	3541633	rs235577	A	G	3583.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr20	3553299	rs11475024	TA	T	426.90	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.275;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=0.540;QD=10.67;ReadPosRankSum=-1.109;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:6,34:0.85:40
chr20	3557342	.	G	GTCTGTCTGTCTGTCTA,GTCTGTCTGTCTATCTATCTATCTA	1459.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=48;set=Intersection	GT:AF:DP	1/2:0.53,0.42:40
chr20	3564453	.	C	CA	174.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.641;ClippingRankSum=0.000;DP=103;ExcessHet=3.0103;FS=1.100;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.665;QD=1.96;ReadPosRankSum=-0.207;SOR=0.487;set=HC	GT:AD:AF:DP	0/1:67,22:0.25:89
chr20	3564672	rs235540	C	T	7169.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr20	3564772	rs170976	T	A	2130.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr20	3565546	rs235538	C	G	10677.77	.	AC=2;AF=1.00;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	1/1:0,388:1.00:388
chr20	3575248	rs235532	G	C	6892.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:2,261:0.99:263
chr20	3605059	rs235519	A	G	4092.77	.	AC=1;AF=0.500;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	0/1:193,182:0.49:375
chr20	3640467	rs635674	C	T	3042.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr20	3640499	rs679393	C	T	2025.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:70,95:0.58:165
chr20	3640823	rs2853208	C	T	864.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:41,40:0.49:81
chr20	3643876	rs12624874	C	T	2561.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:104,121:0.54:225
chr20	3649679	rs543749	G	T	1103.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:53,55:0.51:108
chr20	3649713	rs628965	A	G	3452.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.71;SOR=1.207;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr20	3649721	rs628977	T	C	3519.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.00;SOR=1.096;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr20	3650066	rs630712	C	A	3539.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr20	3651742	rs528557	C	G	2317.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:87,111:0.56:198
chr20	3651765	rs3918396	C	T	2847.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:108,130:0.55:238
chr20	3652207	rs612709	G	A	6206.77	.	AC=1;AF=0.500;AN=2;DB;DP=561;set=Intersection	GT:AD:AF:DP	0/1:276,279:0.50:555
chr20	3655085	rs511898	C	T	566.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:36,25:0.41:61
chr20	3657803	rs568251	AT	GA	6975.77	.	AC=1;AF=0.500;AN=2;DB;DP=354;JOINED;set=Intersection	GT:AD:AF:DP	0/1:166,181:0.52:347
chr20	3662736	rs6084435	A	G	1714.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:104,72:0.41:176
chr20	3670061	rs3746634	G	A	490.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:24,21:0.47:45
chr20	3671891	rs3859664	G	A	878.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:33,40:0.55:73
chr20	3672836	rs910653	G	A	173.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:31,11:0.26:42
chr20	3673815	rs2474436	A	G	3927.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr20	3674821	rs11467516	GAC	G	1411.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.332;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=2.451;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.000;QD=13.07;ReadPosRankSum=-0.226;SOR=1.148;set=HC	GT:AD:AF:DP	0/1:35,73:0.68:108
chr20	3675333	rs3746638	G	A	2802.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:130,131:0.50:261
chr20	3675498	rs709012	T	G	4822.77	.	AC=1;AF=0.500;AN=2;DB;DP=518;set=Intersection	GT:AD:AF:DP	0/1:279,234:0.46:513
chr20	3677095	rs11471725	T	TGCTG	517.73	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:11,13:0.54:24
chr20	3677357	rs501538	T	C	10958.77	.	AC=2;AF=1.00;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	1/1:0,400:1.00:400
chr20	3677736	rs673114	T	G	1603.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:69,67:0.49:136
chr20	3682011	rs1018493	G	A	3046.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:133,144:0.52:277
chr20	3682149	rs13037869	G	A	4743.77	.	AC=1;AF=0.500;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	0/1:225,222:0.50:447
chr20	3682275	rs1018492	A	G	1566.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:88,71:0.45:159
chr20	3684022	rs611847	A	G	5089.77	.	AC=1;AF=0.500;AN=2;DB;DP=535;MQ=60.02;set=Intersection	GT:AD:AF:DP	0/1:285,243:0.46:528
chr20	3684729	rs625372	T	C	2746.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:100,112:0.53:212
chr20	3686307	rs76788623	G	A	2264.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:87,102:0.54:189
chr20	3686436	rs6037651	C	T	4380.77	.	AC=1;AF=0.500;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	0/1:212,215:0.50:427
chr20	3686979	rs8122358	C	T	7843.77	.	AC=1;AF=0.500;AN=2;DB;DP=709;set=Intersection	GT:AD:AF:DP	0/1:333,360:0.52:693
chr20	3723091	rs611073	A	G	6190.73	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr20	3730524	rs62206555	G	A	4700.77	.	AC=1;AF=0.500;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	0/1:226,219:0.49:445
chr20	3732633	rs541760	C	T	11080.77	.	AC=1;AF=0.500;AN=2;DB;DP=1056;set=Intersection	GT:AD:AF:DP	0/1:518,527:0.50:1045
chr20	3734386	rs9171	T	C	3662.77	.	AC=1;AF=0.500;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	0/1:163,174:0.52:337
chr20	3734514	rs2295340	T	C	2371.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.086;ClippingRankSum=0.000;DB;DP=254;ExcessHet=3.0103;FS=4.270;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.60;ReadPosRankSum=-0.298;SOR=0.947;set=HC	GT:AD:AF:DP	0/1:131,116:0.47:247
chr20	3740620	rs11470482	GCA	G	12848.73	.	AC=2;AF=1.00;AN=2;DB;DP=474;set=Intersection	GT:AD:AF:DP	1/1:39,382:0.91:421
chr20	3759200	rs2281477	G	A	7946.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr20	3759528	rs2281478	C	T	6738.77	.	AC=1;AF=0.500;AN=2;DB;DP=670;set=Intersection	GT:AD:AF:DP	0/1:319,330:0.51:649
chr20	3760548	rs6116037	G	A	1232.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr20	3767121	.	TGGGGCCCATCCCGGCGCGCCCCCCGCCCCGGGGCCCGGCGCCGCCGCCGCCGCCCCGGGGCGG	T	79.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.659;ClippingRankSum=0.000;DP=282;ExcessHet=3.0103;FS=6.067;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.35;ReadPosRankSum=0.123;SOR=1.699;set=HC	GT:AD:AF:DP	0/1:210,16:0.07:226
chr20	3767675	rs373161196	TTG	T	1474.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.414;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=5.583;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.34;ReadPosRankSum=0.549;SOR=1.473;set=HC	GT:AD:AF:DP	0/1:29,37:0.56:66
chr20	3767681	.	T	G	1628.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.921;ClippingRankSum=0.000;DP=73;ExcessHet=3.0103;FS=6.810;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.62;ReadPosRankSum=0.188;SOR=1.521;set=HC	GT:AD:AF:DP	0/1:31,41:0.57:72
chr20	3767687	.	T	G	1661.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.423;ClippingRankSum=0.000;DP=76;ExcessHet=3.0103;FS=8.497;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.16;ReadPosRankSum=-0.393;SOR=1.700;set=HC	GT:AD:AF:DP	0/1:31,44:0.59:75
chr20	3767713	.	C	CT	138.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.097;ClippingRankSum=0.000;DP=131;ExcessHet=3.0103;FS=2.963;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.07;ReadPosRankSum=-0.690;SOR=0.439;set=HC	GT:AD:AF:DP	0/1:106,24:0.18:130
chr20	3777172	rs11087603	C	T	181.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:9,10:0.53:19
chr20	3778433	rs3746644	T	C	4441.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr20	3779002	rs11569986	G	A	735.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:51,39:0.43:90
chr20	3780857	rs140901750	T	TGGACTGGAGACCTGGTGCTAG	1652.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.748;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=8.980;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.520;QD=17.58;ReadPosRankSum=0.606;SOR=1.774;set=HC	GT:AD:AF:DP	0/1:65,29:0.31:94
chr20	3781361	rs148574309	TCTGCCTGCCGCC	T	2119.73	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:65,56:0.46:121
chr20	3783649	rs592687	G	C	16507.77	.	AC=2;AF=1.00;AN=2;DB;DP=625;set=Intersection	GT:AD:AF:DP	1/1:0,609:1.00:609
chr20	3783764	rs2228464	C	T	5634.77	.	AC=1;AF=0.500;AN=2;DB;DP=609;set=Intersection	GT:AD:AF:DP	0/1:320,273:0.46:593
chr20	3785397	rs11570017	G	C	3962.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.520;ClippingRankSum=0.000;DB;DP=440;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.41;ReadPosRankSum=0.435;SOR=0.802;set=HC	GT:AD:AF:DP	0/1:187,234:0.56:421
chr20	3842984	rs2326369	C	T	3303.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:181,165:0.48:346
chr20	3844929	rs45437096	C	T	6111.77	.	AC=1;AF=0.500;AN=2;DB;DP=604;set=Intersection	GT:AD:AF:DP	0/1:311,286:0.48:597
chr20	3846843	rs3746660	C	T	3557.77	.	AC=1;AF=0.500;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	0/1:204,185:0.48:389
chr20	3870079	rs71647828	T	A	1941.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:90,91:0.50:181
chr20	3870124	rs3737084	G	C	3900.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr20	3870417	rs3737086	C	A	1367.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:66,94:0.59:160
chr20	3954789	rs2143236	T	A	307.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:17,13:0.43:30
chr20	4053254	rs6139288	A	G	4645.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr20	4053478	.	TAC	TACACAC,T	178	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.26;FR=0.5000,0.5000;HP=1;HapScore=4;MGOF=26;MMLQ=21;MQ=57.17;NF=0,0;NR=9,9;PP=173,178;QD=19.5555555556;SC=CCTCCTCTGTTACACACACAC;SbPval=1.0;Source=Platypus;TC=13;TCF=0;TCR=13;TR=9,9;WE=4053487;WS=4053468;set=Platypus	GT:AF:DP	0/1:0.69:13
chr20	4155935	rs2295484	G	T	4168.77	.	AC=1;AF=0.500;AN=2;DB;DP=475;set=Intersection	GT:AD:AF:DP	0/1:263,208:0.44:471
chr20	4157853	rs1535225	G	A	665.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:26,27:0.51:53
chr20	4162411	rs1124983	T	C	2068.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:89,87:0.49:176
chr20	4163302	rs1051904	A	G	6155.77	.	AC=1;AF=0.500;AN=2;DB;DP=698;set=Intersection	GT:AD:AF:DP	0/1:379,311:0.45:690
chr20	4164283	rs1741327	A	G	2483.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:162,119:0.42:281
chr20	4202802	rs835873	A	G	3220.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:153,151:0.50:304
chr20	4228735	rs35105284	C	T	7877.77	.	AC=1;AF=0.500;AN=2;DB;DP=754;set=Intersection	GT:AD:AF:DP	0/1:366,375:0.51:741
chr20	4229514	rs184418609	T	C	124.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.769;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=2.158;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.32;ReadPosRankSum=-2.251;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:8,7:0.47:15
chr20	4705718	rs2245220	C	T	3975.77	.	AC=1;AF=0.500;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	0/1:186,180:0.49:366
chr20	4705756	rs2756263	T	C	2116.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:108,104:0.49:212
chr20	4713339	rs75337428	G	A	1070.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:64,52:0.45:116
chr20	4765034	rs41279440	C	A	3082.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:127,148:0.54:275
chr20	4768136	rs55900827	T	C	1894.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:54,85:0.61:139
chr20	4768183	rs2422986	G	A	2091.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:149,105:0.41:254
chr20	4768475	rs111533115	A	AAGGGACT	1160.73	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:48,32:0.40:80
chr20	4768846	rs66613512	GT	G	8250.73	.	AC=1;AF=0.500;AN=2;DB;DP=495;MQ=60.09;set=Intersection	GT:AD:AF:DP	0/1:246,243:0.50:489
chr20	4770440	rs2422992	G	A	1129.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr20	4773332	rs55990291	G	C	1192.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.225;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=4.273;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.05;ReadPosRankSum=-1.146;SOR=0.351;set=HC	GT:AD:AF:DP	0/1:47,52:0.53:99
chr20	4773338	rs1998291	G	A	3475.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr20	4776445	rs2423004	G	A	1789.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr20	4776718	rs2423005	C	A	5681.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr20	4776764	rs2423006	G	C	3486.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr20	4776789	rs57821058	C	A	857.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:42,34:0.45:76
chr20	4778754	rs2281639	A	G	2645.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;MQ=60.32;set=Intersection	GT:AD:AF:DP	0/1:109,129:0.54:238
chr20	4778799	rs3830974	CTT	C	5043.73	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:138,135:0.49:273
chr20	4778895	rs2281640	A	G	1352.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:67,64:0.49:131
chr20	4837929	.	T	TAC	79.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.046;ClippingRankSum=0.000;DP=123;ExcessHet=3.0103;FS=6.141;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.77;ReadPosRankSum=0.637;SOR=0.130;set=HC	GT:AD:AF:DP	0/1:34,11:0.24:45
chr20	4837973	.	CACACACACAT	C	164.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.606;ClippingRankSum=0.000;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.17;ReadPosRankSum=1.194;SOR=0.877;set=HC	GT:AD:AF:DP	0/1:38,14:0.27:52
chr20	4839889	.	T	TAA	301.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.055;ClippingRankSum=0.000;DP=309;ExcessHet=3.0103;FS=1.735;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.03;ReadPosRankSum=-2.095;SOR=0.948;set=HC	GT:AD:AF:DP	0/1:225,67:0.23:292
chr20	4839890	rs6052940	T	A	3363.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.481;ClippingRankSum=0.000;DB;DP=323;ExcessHet=3.0103;FS=2.697;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.82;ReadPosRankSum=-1.894;SOR=0.855;set=HC	GT:AD:AF:DP	0/1:202,109:0.35:311
chr20	4839897	rs6052941	T	A	3368.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.055;ClippingRankSum=0.000;DB;DP=382;ExcessHet=3.0103;FS=1.473;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.79;ReadPosRankSum=-3.302;SOR=0.600;set=HC	GT:AD:AF:DP	0/1:216,128:0.37:344
chr20	4843370	rs3737321	C	T	2735.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:164,133:0.45:297
chr20	4843609	rs6052943	G	A	702.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:47,34:0.42:81
chr20	4848603	rs72552222	A	G	565.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:38,27:0.42:65
chr20	4854682	rs1110277	A	G	3455.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:156,172:0.52:328
chr20	4864570	rs2298174	G	C	1175.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:49,51:0.51:100
chr20	4880132	rs71993570	AGCTCAATGCCTTCTGC	A	3266.73	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr20	4880308	rs1776964	G	A	7735.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:2,287:0.99:289
chr20	5283256	rs3746682	C	G	4405.77	.	AC=1;AF=0.500;AN=2;DB;DP=470;set=Intersection	GT:AD:AF:DP	0/1:251,212:0.46:463
chr20	5296488	rs910971	G	C	6473.77	.	AC=1;AF=0.500;AN=2;DB;DP=608;set=Intersection	GT:AD:AF:DP	0/1:302,305:0.50:607
chr20	5296549	rs910972	C	T	7521.77	.	AC=1;AF=0.500;AN=2;DB;DP=732;set=Intersection	GT:AD:AF:DP	0/1:367,361:0.50:728
chr20	5296651	rs910973	T	G	7145.77	.	AC=1;AF=0.500;AN=2;DB;DP=729;set=Intersection	GT:AD:AF:DP	0/1:355,350:0.50:705
chr20	5297172	rs4544519	T	G	3121.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:125,142:0.53:267
chr20	5297193	rs4315595	A	G	1899.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:86,87:0.50:173
chr20	5454400	rs606389	A	T	11888.77	.	AC=2;AF=1.00;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	1/1:0,450:1.00:450
chr20	5454686	rs1060236	A	G	428.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:10,16:0.62:26
chr20	5482406	rs116753100	T	G	2522.77	.	AC=1;AF=0.500;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	0/1:196,141:0.42:337
chr20	5538492	rs45463396	C	T	286.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:8,12:0.60:20
chr20	5539564	rs41282126	C	T	721.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:38,35:0.48:73
chr20	5539599	rs73596113	A	G	485.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:24,22:0.48:46
chr20	5547951	rs3736765	G	A	418.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:21,18:0.46:39
chr20	5548208	rs11475275	TA	T	181.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.248;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=2.326;MLEAC=1;MLEAF=0.500;MQ=60.36;MQRankSum=0.714;QD=8.26;ReadPosRankSum=0.813;SOR=1.688;set=HC	GT:AD:AF:DP	0/1:6,16:0.73:22
chr20	5551034	rs1056244	G	C	2783.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr20	5556686	.	T	TAC	161.73	.	AC=1;AF=0.500;AN=2;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,7:0.58:12
chr20	5556752	rs11475607	TA	T	216.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.08;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr20	5559143	rs41282130	G	A	3208.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:168,152:0.47:320
chr20	5559292	rs6038208	T	C	2563.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:90,122:0.58:212
chr20	5559441	rs6053512	T	C	389.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:11,16:0.59:27
chr20	5564774	rs6053517	T	C	908.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr20	5574134	rs1983694	T	C	1283.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr20	5752917	rs237420	A	G	800.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:52,41:0.44:93
chr20	5753865	rs13043139	C	A	1831.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:101,87:0.46:188
chr20	5843577	rs1503896	T	A	82.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:12,5:0.29:17
chr20	5843812	rs1699233	T	C	2857.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:151,138:0.48:289
chr20	5844121	rs1699232	CA	TG	2856.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;JOINED;set=Intersection	GT:AD:AF:DP	0/1:98,76:0.44:174
chr20	5903517	rs236151	A	G	3839.77	.	AC=1;AF=0.500;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	0/1:194,184:0.49:378
chr20	5905779	rs2821	C	A	3630.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:157,170:0.52:327
chr20	5935385	rs236114	T	C	2139.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:106,106:0.50:212
chr20	5944076	.	CTGTATTA	C	2954	.	AC=1;AF=0.500;AN=2;BRF=0.45;FR=0.5000;HP=1;HapScore=2;MGOF=8;MMLQ=23;MQ=59.92;NF=4;NR=40;PP=2954;QD=20;SC=CATAATTTTACTGTATTATAT;SbPval=0.18;Source=Platypus;TC=101;TCF=5;TCR=96;TR=44;WE=5944093;WS=5944066;set=Platypus	GT:AD:AF:DP	0/1:57,44:0.44:101
chr20	5944077	.	TG	T	2910.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.290;ClippingRankSum=0.000;DP=204;ExcessHet=3.0103;FS=0.561;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.162;QD=15.65;ReadPosRankSum=-0.740;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:106,80:0.43:186
chr20	5944079	rs372826979	TATTATA	T	2909.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.268;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=0.561;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.162;QD=15.64;ReadPosRankSum=-0.649;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:106,80:0.43:186
chr20	5944085	.	A	T	2962	.	AC=1;AF=0.500;AN=2;BRF=0.45;FR=0.5000;HP=3;HapScore=2;MGOF=8;MMLQ=22;MQ=59.67;NF=19;NR=41;PP=2962;QD=20;SC=ACTGTATTATATTGTACGTTT;SbPval=0.53;Source=Platypus;TC=137;TCF=43;TCR=94;TR=60;WE=5944093;WS=5944066;set=Platypus	GT:AD:AF:DP	0/1:77,60:0.44:137
chr20	5948706	rs236100	A	G	3869.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.52;SOR=1.130;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr20	5948712	rs236101	C	T	3727.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.86;SOR=1.101;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr20	5975124	rs11472210	G	GAC	139.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.983;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.99;ReadPosRankSum=2.167;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:18,10:0.36:28
chr20	5975380	rs11422423	T	TA	103.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.420;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=2.363;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.41;ReadPosRankSum=-1.778;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:4,10:0.71:14
chr20	5987267	rs2294971	A	T	136.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr20	5988095	rs4813786	A	G	3594.77	.	AC=1;AF=0.500;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	0/1:186,179:0.49:365
chr20	5990723	rs71182113	A	AT	65.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.310;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=1.771;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.894;QD=1.13;ReadPosRankSum=1.508;SOR=1.058;set=HC	GT:AD:AF:DP	0/1:43,15:0.26:58
chr20	5990727	rs6117033	T	G	189.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.003;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=-0.772;QD=3.58;ReadPosRankSum=0.376;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:32,21:0.40:53
chr20	6011882	rs2423132	G	T	1449.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr20	6032927	rs6107750	C	T	2012.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:79,94:0.54:173
chr20	6033004	rs6117050	G	A	1849.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:52,51:0.50:103
chr20	6033025	rs1884643	T	C	2047.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:47,61:0.56:108
chr20	6033033	rs6107751	G	A	1016.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:60,48:0.44:108
chr20	6033628	rs751681	T	G	1692.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:63,70:0.53:133
chr20	6077429	rs202086138	CT	C	83.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.917;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=2.017;MLEAC=1;MLEAF=0.500;MQ=60.45;MQRankSum=1.160;QD=3.81;ReadPosRankSum=-2.084;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:10,12:0.55:22
chr20	6100002	rs6038363	C	A	2565.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr20	6751034	rs1049007	A	G	22626.77	.	AC=2;AF=1.00;AN=2;DB;DP=871;set=Intersection	GT:AD:AF:DP	1/1:2,860:1.00:862
chr20	6759115	rs235768	A	T	13123.77	.	AC=2;AF=1.00;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	1/1:0,479:1.00:479
chr20	7866261	rs2272813	G	C	5711.77	.	AC=1;AF=0.500;AN=2;DB;DP=556;set=Intersection	GT:AD:AF:DP	0/1:276,276:0.50:552
chr20	7887025	rs6055387	G	C	439.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:24,18:0.43:42
chr20	8626859	rs41275582	G	T	5249.77	.	AC=1;AF=0.500;AN=2;DB;DP=589;set=Intersection	GT:AD:AF:DP	0/1:312,259:0.45:571
chr20	8637727	rs6140670	G	A	3440.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.16;SOR=2.147;set=HC	GT:AD:AF:DP	1/1:0,118:1.00:118
chr20	8665502	.	G	GA	686.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.057;ClippingRankSum=0.000;DP=233;ExcessHet=3.0103;FS=8.232;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=3.119;QD=3.25;ReadPosRankSum=2.232;SOR=0.304;set=HC	GT:AD:AF:DP	0/1:140,71:0.34:211
chr20	8678446	rs2295179	G	A	816.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:68,39:0.36:107
chr20	8689441	rs6133609	T	C	2925.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:125,136:0.52:261
chr20	8698565	rs6039243	T	C	686.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:43,35:0.45:78
chr20	8703145	rs6086563	C	G	5901.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr20	8705496	rs6056043	A	C	2742.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:1,101:0.99:102
chr20	8708166	rs17446441	A	G	1180.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:49,48:0.49:97
chr20	8713842	rs993670	G	A	1780.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr20	8719777	rs6039246	G	A	513.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:17,21:0.55:38
chr20	8731631	rs202097177	G	GGAGTGCA	643.73	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:21,17:0.45:38
chr20	8737734	rs2076413	G	A	5186.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.948;ClippingRankSum=0.000;DB;DP=576;ExcessHet=3.0103;FS=3.314;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.30;ReadPosRankSum=-0.163;SOR=0.955;set=HC	GT:AD:AF:DP	0/1:302,256:0.46:558
chr20	8741027	rs2064286	C	T	1555.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:95,76:0.44:171
chr20	8741247	rs3886935	C	T	3071.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr20	8755243	rs2235613	T	C	9982.77	.	AC=2;AF=1.00;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	1/1:2,372:0.99:374
chr20	8769180	rs2327089	C	T	9765.77	.	AC=2;AF=1.00;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	1/1:0,372:1.00:372
chr20	8769423	rs2076411	T	C	658.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:39,30:0.43:69
chr20	8770108	rs4633993	A	C	1586.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr20	8770130	rs2327090	A	G	2840.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr20	8770282	rs6039269	G	A	3288.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:143,161:0.53:304
chr20	8770318	rs4816086	A	G	2136.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:123,109:0.47:232
chr20	8770822	rs2294597	C	T	2640.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.750;ClippingRankSum=0.000;DB;DP=321;ExcessHet=3.0103;FS=0.868;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.41;ReadPosRankSum=-1.415;SOR=0.625;set=HC	GT:AD:AF:DP	0/1:177,137:0.44:314
chr20	8770932	rs2294598	A	C	3366.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:142,160:0.53:302
chr20	8773155	rs6056118	C	T	1289.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:65,54:0.45:119
chr20	8773295	rs6056119	T	C	16516.77	.	AC=2;AF=1.00;AN=2;DB;DP=650;set=Intersection	GT:AD:AF:DP	1/1:0,639:1.00:639
chr20	8782901	rs6056128	G	C	3525.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr20	9288522	rs6077510	G	A	828.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.919;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.46;ReadPosRankSum=2.569;SOR=0.623;set=HC	GT:AD:AF:DP	0/1:51,47:0.48:98
chr20	9318847	rs34265063	G	A	580.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:7,25:0.78:32
chr20	9364799	rs2076234	A	G	2913.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:96,125:0.57:221
chr20	9368102	rs7265290	A	G	1207.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:47,55:0.54:102
chr20	9370506	rs139716774	G	GT	221.73	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:44,24:0.35:68
chr20	9374341	rs34305936	A	T	3225.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:146,153:0.51:299
chr20	9453567	rs2206389	T	C	138.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:15,7:0.32:22
chr20	9543622	rs2297345	C	T	3509.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:177,165:0.48:342
chr20	9547018	rs11700112	C	G	2360.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:191,118:0.38:309
chr20	9560712	rs3746545	A	G	738.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:45,37:0.45:82
chr20	9625003	rs4816157	G	A	5539.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr20	10019093	rs575534	A	G	13510.77	.	AC=2;AF=1.00;AN=2;DB;DP=503;set=Intersection	GT:AD:AF:DP	1/1:0,495:1.00:495
chr20	10026108	rs6077636	A	G	848.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:28,31:0.53:59
chr20	10026357	rs685723	T	C	2846.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:123,131:0.52:254
chr20	10030188	rs652633	T	A	4363.77	.	AC=1;AF=0.500;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	0/1:186,209:0.53:395
chr20	10030931	rs656111	C	A	1190.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:71,54:0.43:125
chr20	10032413	rs683145	T	G	4710.77	.	AC=1;AF=0.500;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	0/1:220,237:0.52:457
chr20	10032641	rs6141103	G	C	291.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:6,11:0.65:17
chr20	10273694	.	C	CT	175.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.453;ClippingRankSum=0.000;DP=229;ExcessHet=3.0103;FS=5.871;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=2.532;QD=0.96;ReadPosRankSum=1.107;SOR=1.218;set=HC	GT:AD:AF:DP	0/1:145,38:0.21:183
chr20	10386013	rs1545	C	A	4727.77	.	AC=1;AF=0.500;AN=2;DB;DP=451;set=Intersection	GT:AD:AF:DP	0/1:231,219:0.49:450
chr20	10386059	rs1547	G	A	5406.77	.	AC=1;AF=0.500;AN=2;DB;DP=513;set=Intersection	GT:AD:AF:DP	0/1:256,254:0.50:510
chr20	10388506	rs6133907	G	A	1334.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:39,56:0.59:95
chr20	10389218	rs6133909	T	C	3388.77	.	AC=1;AF=0.500;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	0/1:178,160:0.47:338
chr20	10389480	rs764266	T	A	873.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:25,35:0.58:60
chr20	10393145	rs221667	C	G	1020.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:59,42:0.42:101
chr20	10393162	rs6133917	A	C	1886.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:58,82:0.59:140
chr20	10393629	rs17852625	G	A	5894.77	.	AC=1;AF=0.500;AN=2;DB;DP=531;set=Intersection	GT:AD:AF:DP	0/1:260,264:0.50:524
chr20	10394046	rs16991547	G	A	3056.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:147,136:0.48:283
chr20	10438780	rs6104617	A	G	1548.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr20	10439002	rs6039947	T	A	1843.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:3,73:0.96:76
chr20	10439037	rs6039948	A	G	1440.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr20	10603326	rs73075324	A	G	1895.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:80,83:0.51:163
chr20	10603750	rs6077853	G	A	3636.77	.	AC=1;AF=0.500;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	0/1:185,170:0.48:355
chr20	10620386	rs1051419	A	G	4359.77	.	AC=1;AF=0.500;AN=2;DB;DP=467;set=Intersection	GT:AD:AF:DP	0/1:246,211:0.46:457
chr20	10621305	rs6074164	A	C	1065.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:37,43:0.54:80
chr20	10622080	rs55818737	C	CA	1472.73	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:97,98:0.50:195
chr20	10624924	.	TCA	T,TCTCACACA	2218.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=148;set=Intersection	GT:AF:DP	1/2:0.52,0.36:111
chr20	10624928	.	A	T	795.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.607;ClippingRankSum=0.000;DP=148;ExcessHet=3.0103;FS=6.301;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.03;ReadPosRankSum=0.831;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:91,41:0.31:132
chr20	10624930	rs368807351	A	T	62.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.000;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=1.043;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.46;ReadPosRankSum=0.757;SOR=0.510;set=HC	GT:AD:AF:DP	0/1:119,17:0.12:136
chr20	10633237	rs1131695	G	A	6449.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr20	10633313	rs6040055	T	C	1733.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:91,87:0.49:178
chr20	10639385	rs2273060	A	G	3222.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:2,114:0.98:116
chr20	10653469	rs1051415	C	T	9384.77	.	AC=1;AF=0.500;AN=2;DB;DP=853;set=Intersection	GT:AD:AF:DP	0/1:407,433:0.52:840
chr20	10653739	rs62185096	G	A	2668.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:189,132:0.41:321
chr20	11008382	rs4813955	A	C	737.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:52,38:0.42:90
chr20	11009079	rs45609436	T	C	377.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:24,16:0.40:40
chr20	11790885	rs3036550	C	CTT	2209.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr20	11791008	rs803665	C	T	5039.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr20	11791094	rs803664	G	A	1919.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:93,95:0.51:188
chr20	11791211	rs803663	T	A	173.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:12,8:0.40:20
chr20	11830180	rs33956420	CT	C	1866.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.194;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=3.121;MLEAC=2;MLEAF=1.000;MQ=60.10;MQRankSum=0.256;QD=18.48;ReadPosRankSum=-1.068;SOR=2.137;set=HC	GT:AD:AF:DP	1/1:6,95:0.94:101
chr20	11871253	rs11908312	G	C	891.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:32,39:0.55:71
chr20	12989901	rs3761896	T	C	1073.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:66,51:0.44:117
chr20	12990044	rs3761895	T	C	8532.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr20	12990057	rs3761894	T	A	2685.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:152,134:0.47:286
chr20	13029764	rs1431433	A	C	14679.77	.	AC=2;AF=1.00;AN=2;DB;DP=565;set=Intersection	GT:AD:AF:DP	1/1:2,556:1.00:558
chr20	13029790	rs6078899	C	T	4609.77	.	AC=1;AF=0.500;AN=2;DB;DP=509;set=Intersection	GT:AD:AF:DP	0/1:281,222:0.44:503
chr20	13029862	rs919604	C	T	11082.77	.	AC=2;AF=1.00;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	1/1:0,390:1.00:390
chr20	13029920	rs934335	C	G	11983.77	.	AC=2;AF=1.00;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	1/1:0,427:1.00:427
chr20	13053018	rs243887	T	G	2465.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:123,123:0.50:246
chr20	13071871	rs243874	C	A	644.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:35,29:0.45:64
chr20	13073963	rs1030561	T	C	1711.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr20	13074235	rs708937	G	A	14304.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.70;SOR=1.192;set=HC	GT:AD:AF:DP	1/1:0,335:1.00:335
chr20	13074243	rs1011290	T	A	13622.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.71;SOR=1.319;set=HC	GT:AD:AF:DP	1/1:0,298:1.00:298
chr20	13090745	rs2236126	G	C	1231.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:35,56:0.62:91
chr20	13134931	rs2073303	C	G	2863.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr20	13202315	rs113569834	G	C	870.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr20	13269438	rs34117863	C	CT	72.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.200;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=1.389;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.937;QD=0.89;ReadPosRankSum=-1.366;SOR=0.352;set=HC	GT:AD:AF:DP	0/1:66,16:0.20:82
chr20	13464030	rs2273480	C	A	6608.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:1,236:1.00:237
chr20	13509263	rs3761890	G	A	241.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:24,12:0.33:36
chr20	13561632	rs34179122	T	TA,TAA	2009.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.215;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=3.946;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.06;MQRankSum=0.000;QD=14.46;ReadPosRankSum=1.897;SOR=1.382;set=HC	GT:AD:AF:DP	1/2:25,38,76:0.27,0.55:139
chr20	13597717	rs6033773	G	A	1505.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:86,75:0.47:161
chr20	13605903	rs2070307	A	T	598.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:44,32:0.42:76
chr20	13610464	rs35023928	A	G	2162.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:86,89:0.51:175
chr20	13695498	rs6079146	G	A	678.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr20	13695607	rs34414644	T	G	4893.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr20	13695824	.	C	CA,CAA	816.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.047;ClippingRankSum=0.000;DP=84;ExcessHet=3.0103;FS=4.483;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.26;MQRankSum=0.807;QD=11.84;ReadPosRankSum=-1.309;SOR=0.257;set=HC	GT:AD:AF:DP	1/2:16,32,21:0.46,0.30:69
chr20	13698006	rs4239710	T	C	4834.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr20	13740632	rs73100123	T	A	1373.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr20	13743298	rs754796	A	G	424.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr20	13747441	rs3180370	A	G	1492.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.27;SOR=1.848;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr20	13750448	rs35589194	C	CA	925.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.02;SOR=0.746;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr20	13755728	rs67609153	CA	C	216.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.052;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=0.765;QD=6.77;ReadPosRankSum=-0.049;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:9,23:0.72:32
chr20	13755996	rs6079174	T	C	857.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr20	13763896	rs28372964	C	CATTA	772.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr20	13765944	.	C	CGCGGGGCGGCGGGGCG	4046.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.979;ClippingRankSum=0.000;DP=411;ExcessHet=3.0103;FS=1.033;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=1.180;QD=15.93;ReadPosRankSum=1.747;SOR=0.609;set=HC	GT:AD:AF:DP	0/1:147,107:0.42:254
chr20	13769127	rs6042362	A	G	1693.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr20	13782409	rs1015517	A	G	2123.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;MQ=60.14;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr20	13845987	rs761811	C	T	7639.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr20	13847420	rs660710	A	G	12554.77	.	AC=2;AF=1.00;AN=2;DB;DP=480;set=Intersection	GT:AD:AF:DP	1/1:0,474:1.00:474
chr20	13856558	rs73085418	G	A	5848.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr20	13868745	rs243910	T	C	3136.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr20	14306953	rs6079391	G	T	12307.77	.	AC=2;AF=1.00;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	1/1:0,442:1.00:442
chr20	14830453	rs438632	C	T	3618.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:2,130:0.98:132
chr20	14830596	rs6079581	C	G	10908.77	.	AC=2;AF=1.00;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	1/1:2,408:1.00:410
chr20	15480226	rs2180526	T	C	658.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:35,25:0.42:60
chr20	15480308	rs2145014	G	T	2907.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:143,139:0.49:282
chr20	15480548	rs2145015	T	A	5905.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.01;SOR=1.713;set=HC	GT:AD:AF:DP	1/1:0,164:1.00:164
chr20	15480548	.	TTCCCCCC	ATCCCCCA,ATCCCCCC	1346	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.28;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=2;MMLQ=28;MQ=60.0;NF=16,36;NR=50,98;PP=1346,1097;QD=21.20405871;SC=TGATGCTCAGTTCCCCCCAAA;SbPval=0.67;Source=Platypus;TC=134;TCF=36;TCR=98;TR=66,134;WE=15480563;WS=15480538;set=Platypus	GT:AF:DP	0/1:0.49:134
chr20	15480555	rs6079854	C	A	1317.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.120;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.09;ReadPosRankSum=0.830;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:74,71:0.49:145
chr20	15948326	rs11467891	GA	G	206.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.897;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=5.940;MLEAC=1;MLEAF=0.500;MQ=60.45;MQRankSum=2.162;QD=3.98;ReadPosRankSum=0.486;SOR=0.211;set=HC	GT:AD:AF:DP	0/1:27,25:0.48:52
chr20	15967327	rs34675181	A	G	899.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:61,46:0.43:107
chr20	16021720	rs6135652	C	T	1216.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:49,57:0.54:106
chr20	16025192	rs11482445	C	CT	617.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.980;ClippingRankSum=0.000;DB;DP=221;ExcessHet=3.0103;FS=3.228;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.96;ReadPosRankSum=0.885;SOR=0.452;set=HC	GT:AD:AF:DP	0/1:148,61:0.29:209
chr20	16351329	rs2144893	C	T	603.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:33,30:0.48:63
chr20	16352234	rs111754823	C	CAA	355.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.167;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.23;ReadPosRankSum=0.882;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:39,29:0.43:68
chr20	16359567	rs6034464	A	G	4320.77	.	AC=1;AF=0.500;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	0/1:241,213:0.47:454
chr20	16362173	rs11306679	CA	C	631.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.929;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=12.142;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.059;QD=5.09;ReadPosRankSum=-1.285;SOR=1.931;set=HC	GT:AD:AF:DP	0/1:56,68:0.55:124
chr20	16362265	rs41276372	T	A	3603.77	.	AC=1;AF=0.500;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	0/1:240,183:0.43:423
chr20	16475112	rs6044027	G	A	500.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:15,21:0.58:36
chr20	16486698	rs2295115	G	A	2762.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:106,130:0.55:236
chr20	16493533	rs6135775	T	C	3761.77	.	AC=1;AF=0.500;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	0/1:240,190:0.44:430
chr20	16493580	rs6135776	A	G	4559.77	.	AC=1;AF=0.500;AN=2;DB;DP=473;set=Intersection	GT:AD:AF:DP	0/1:245,223:0.48:468
chr20	16496362	rs6044046	T	A	3895.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:144,171:0.54:315
chr20	16496415	rs6131837	T	C	1553.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:54,63:0.54:117
chr20	16506939	rs6034517	C	T	1822.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:70,76:0.52:146
chr20	16554067	rs4814510	A	G	2845.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:1,94:0.99:95
chr20	16729262	rs6080387	C	T	1201.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:40,46:0.53:86
chr20	16729654	rs10627353	A	AAGATG	3769.73	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:70,97:0.58:167
chr20	16730464	rs6075100	T	C	567.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:27,26:0.49:53
chr20	16730479	rs6075101	C	T	717.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:34,35:0.51:69
chr20	16730522	rs6135878	T	C	1654.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:62,77:0.55:139
chr20	17389830	rs2217182	T	C	3548.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr20	17389877	rs2859875	C	T	2651.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:121,124:0.51:245
chr20	17390095	rs2195108	A	T	2161.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:92,97:0.51:189
chr20	17409907	rs16999181	C	G	977.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:49,38:0.44:87
chr20	17436895	rs2021789	G	A	6424.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.997;ClippingRankSum=0.000;DB;DP=307;ExcessHet=3.0103;FS=3.997;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.44;ReadPosRankSum=-1.114;SOR=1.660;set=HC	GT:AD:AF:DP	1/1:6,237:0.98:243
chr20	17462150	rs11907226	C	T	3543.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr20	17474690	rs6105762	T	G	4477.77	.	AC=1;AF=0.500;AN=2;DB;DP=513;set=Intersection	GT:AD:AF:DP	0/1:288,220:0.43:508
chr20	17474791	rs6080717	G	A	5476.77	.	AC=1;AF=0.500;AN=2;DB;DP=554;set=Intersection	GT:AD:AF:DP	0/1:283,264:0.48:547
chr20	17474968	rs6080718	T	C	4358.77	.	AC=1;AF=0.500;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	0/1:182,204:0.53:386
chr20	17477865	rs6136120	C	T	248.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:10,11:0.52:21
chr20	17479730	rs6111549	T	C	2361.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:91,109:0.55:200
chr20	17479763	rs2235585	T	C	1529.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:53,73:0.58:126
chr20	17539168	rs6044883	A	G	3106.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr20	17594714	rs35586556	GC	G	686.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:21,21:0.50:42
chr20	17595329	rs7261001	G	A	1143.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:42,50:0.54:92
chr20	17596731	rs2236250	C	T	6278.77	.	AC=1;AF=0.500;AN=2;DB;DP=623;set=Intersection	GT:AD:AF:DP	0/1:311,300:0.49:611
chr20	17597331	rs911347	C	T	1334.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:59,56:0.49:115
chr20	17597361	rs911348	A	G	4130.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr20	17599214	rs2328181	T	C	5079.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr20	17600357	rs11960	G	A	6225.77	.	AC=1;AF=0.500;AN=2;DB;DP=598;set=Intersection	GT:AD:AF:DP	0/1:297,299:0.50:596
chr20	17602028	rs2236253	T	C	3168.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:100,145:0.59:245
chr20	17602083	.	GA	G	6123.73	.	AC=1;AF=0.500;AN=2;DP=414;MQ=60.03;set=Intersection	GT:AD:AF:DP	0/1:229,183:0.44:412
chr20	17605016	rs2236254	T	C	1278.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:49,58:0.54:107
chr20	17605111	rs13044147	T	G	3154.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:178,149:0.46:327
chr20	17605240	rs6034867	A	T	6194.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr20	17606372	rs2295672	T	C	3787.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:160,167:0.51:327
chr20	17610729	rs6044917	T	C	2157.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr20	17617531	rs6044923	T	C	732.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr20	17622676	rs41276398	C	T	773.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:24,36:0.60:60
chr20	17640009	rs13040917	A	C	11367.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.164;ClippingRankSum=0.000;DB;DP=451;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.54;MQRankSum=-0.352;QD=26.07;ReadPosRankSum=2.019;SOR=0.229;set=HC	GT:AD:AF:DP	1/1:1,435:1.00:436
chr20	17674451	rs6080781	G	C	579.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr20	17705664	rs2296905	G	A	708.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:43,33:0.43:76
chr20	17705677	rs4814640	A	G	2158.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:2,85:0.98:87
chr20	17705849	rs2296907	C	T	1988.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:133,108:0.45:241
chr20	17716416	rs1053993	C	G	2232.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:149,109:0.42:258
chr20	17931095	rs3736771	C	T	1051.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:68,53:0.44:121
chr20	17932210	rs2273448	C	T	828.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.550;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=2.131;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.75;ReadPosRankSum=-0.111;SOR=1.000;set=HC	GT:AD:AF:DP	0/1:27,38:0.58:65
chr20	17932415	rs2273449	T	C	407.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:14,16:0.53:30
chr20	17933511	rs910900	C	A	1617.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr20	17937801	rs3790301	T	C	1595.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr20	17943492	rs753213	A	T	1809.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:47,76:0.62:123
chr20	17949167	rs2273450	G	A	1396.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:67,65:0.49:132
chr20	17950545	rs11551768	A	T	3721.77	.	AC=1;AF=0.500;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	0/1:218,185:0.46:403
chr20	17956197	.	C	CA	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.612;ClippingRankSum=0.000;DP=27;ExcessHet=3.0103;FS=2.948;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.70;ReadPosRankSum=-1.899;SOR=0.157;set=HC	GT:AD:AF:DP	0/1:17,7:0.29:24
chr20	17968923	rs28455091	T	C	3765.77	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:179,179:0.50:358
chr20	18005600	rs2281543	A	C	2808.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:190,139:0.42:329
chr20	18022077	rs6136266	A	G	2371.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:121,107:0.47:228
chr20	18022171	rs1571431	C	T	5723.77	.	AC=1;AF=0.500;AN=2;DB;DP=513;set=Intersection	GT:AD:AF:DP	0/1:239,269:0.53:508
chr20	18022362	rs6111803	G	T	990.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:35,41:0.54:76
chr20	18022399	rs6111804	G	A	746.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:23,31:0.57:54
chr20	18118740	rs1205190	T	G	5340.77	.	AC=1;AF=0.500;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	0/1:165,245:0.60:410
chr20	18123084	rs78016265	CT	C	426.73	.	AC=1;AF=0.500;AN=2;DB;DP=60;MQ=60.18;set=Intersection	GT:AD:AF:DP	0/1:19,28:0.60:47
chr20	18143117	rs1205193	T	G	4187.77	.	AC=1;AF=0.500;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	0/1:165,175:0.51:340
chr20	18143355	rs1205194	C	T	3555.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:160,159:0.50:319
chr20	18165129	.	GTT	G	158.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DP=39;ExcessHet=3.0103;FS=1.374;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.41;ReadPosRankSum=0.447;SOR=0.970;set=HC	GT:AD:AF:DP	0/1:25,11:0.31:36
chr20	18167977	rs2747404	T	C	4222.77	.	AC=1;AF=0.500;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	0/1:194,209:0.52:403
chr20	18286888	rs2328286	G	A	6150.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr20	18291064	rs2424155	C	T	1756.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr20	18296072	rs1033545	T	A	10682.77	.	AC=2;AF=1.00;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	1/1:1,381:1.00:382
chr20	18361603	rs1883938	T	C	12554.77	.	AC=2;AF=1.00;AN=2;DB;DP=474;set=Intersection	GT:AD:AF:DP	1/1:0,469:1.00:469
chr20	18375581	rs4361192	T	C	3812.77	.	AC=1;AF=0.500;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	0/1:245,199:0.45:444
chr20	18393275	rs59695827	C	T	712.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:31,32:0.51:63
chr20	18393312	rs6075337	C	G	1239.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:51,57:0.53:108
chr20	18393499	rs6075338	C	T	1632.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:69,78:0.53:147
chr20	18393592	rs6136368	G	A	332.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:19,17:0.47:36
chr20	18396204	rs3830934	G	GT	222.73	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:38,17:0.31:55
chr20	18414185	.	CA	C	46.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.548;ClippingRankSum=0.000;DP=55;ExcessHet=3.0103;FS=1.854;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.93;ReadPosRankSum=-0.032;SOR=1.392;set=HC	GT:AD:AF:DP	0/1:36,14:0.28:50
chr20	18414356	rs6035042	A	G	7590.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr20	18429497	rs6081147	T	C	634.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.004;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=4.041;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.84;ReadPosRankSum=0.570;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:16,16:0.50:32
chr20	18429509	rs6105923	T	G	704.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.935;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=3.432;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.78;ReadPosRankSum=0.264;SOR=0.208;set=HC	GT:AD:AF:DP	0/1:21,21:0.50:42
chr20	18432690	rs2424196	T	A	1752.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:65,69:0.51:134
chr20	18433335	rs41276436	T	C	1549.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:90,82:0.48:172
chr20	18435800	rs6045413	G	A	2168.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:95,99:0.51:194
chr20	18445963	rs6035051	A	G	9409.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	1/1:0,353:1.00:353
chr20	18446024	rs6111974	C	A	1326.73	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:93,66:0.42:159
chr20	18446050	rs111987137	A	ATGTGCACTTATAGC	4926.73	.	AC=2;AF=1.00;AN=2;DB;DP=120;MQ=60.72;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr20	18448079	rs1474974	C	A	6042.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr20	18460614	rs6035056	A	T	4354.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr20	18460641	rs6081160	G	A	6395.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;MQ=60.04;set=Intersection	GT:AD:AF:DP	1/1:2,243:0.99:245
chr20	18461237	rs57962043	GT	G	772.73	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:20,51:0.72:71
chr20	18462421	rs1055171	A	G	8387.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr20	18462492	rs4813332	A	G	2366.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr20	18462518	rs6111983	C	G	1569.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr20	18464110	rs3827965	T	C	1354.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.22;SOR=1.426;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr20	18470664	rs3748450	A	G	2483.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr20	18470980	rs2424217	A	G	17637.77	.	AC=2;AF=1.00;AN=2;DB;DP=662;set=Intersection	GT:AD:AF:DP	1/1:0,643:1.00:643
chr20	18477614	rs2247746	A	G	7104.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr20	18477870	rs2247757	T	A	5952.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr20	18505403	rs3762200	G	C	2481.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr20	18505563	.	C	CT	311.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.712;ClippingRankSum=0.000;DP=356;ExcessHet=3.0103;FS=0.539;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.93;ReadPosRankSum=-0.013;SOR=0.625;set=HC	GT:AD:AF:DP	0/1:273,61:0.18:334
chr20	18506616	rs911115	T	C	2594.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr20	18511456	rs6081189	A	G	3204.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.26;SOR=0.839;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr20	18511458	rs57738665	C	CT	645.06	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.199;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=1.322;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.24;ReadPosRankSum=-0.651;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:16,47:0.75:63
chr20	18511504	rs3762201	T	C	1315.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr20	18523864	rs2295557	C	T	1146.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr20	18529233	rs3736775	T	A	6821.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:3,256:0.99:259
chr20	18535982	rs1555363	A	G	1557.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr20	18548425	rs6075366	A	G	2344.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr20	18549848	rs11475239	CT	C	549.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.204;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=1.516;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.22;ReadPosRankSum=0.014;SOR=0.483;set=HC	GT:AD:AF:DP	0/1:10,39:0.80:49
chr20	18550218	rs71194252	CT	C	114.84	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.531;ClippingRankSum=-0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.40;MQRankSum=0.396;QD=6.76;ReadPosRankSum=-2.423;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:4,13:0.76:17
chr20	18568902	rs6075371	G	A	38.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr20	18568918	rs6075372	A	G	39.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.87;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr20	18576912	rs1884875	C	G	1260.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr20	18608937	rs3818221	C	G	1562.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr20	18810821	.	T	C	2552.77	.	AC=1;AF=0.500;AN=2;DP=220;set=Intersection	GT:AD:AF:DP	0/1:113,101:0.47:214
chr20	19261623	rs1569767	G	A	7583.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr20	19261922	rs3790176	G	A	292.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr20	19560555	rs11087288	GA	G	8426.73	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr20	19560664	rs3790261	G	A	8348.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,319:1.00:319
chr20	19634732	rs3790278	G	A	1942.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:105,95:0.47:200
chr20	19634747	rs3790279	T	C	1868.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:111,88:0.44:199
chr20	19646436	.	CGTGTGTGT	C,CGTGTGT	1923.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.213;ClippingRankSum=0.000;DP=97;ExcessHet=3.0103;FS=2.675;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.11;MQRankSum=0.311;QD=24.66;ReadPosRankSum=0.000;SOR=1.807;set=HC	GT:AD:AF:DP	1/2:3,37,38:0.47,0.49:78
chr20	19654452	rs11468498	GTAA	G	2279.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:50,61:0.55:111
chr20	19654454	rs1406971	A	G	1058.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:61,50:0.45:111
chr20	19673767	rs6106120	T	C	151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.849;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.84;ReadPosRankSum=-0.869;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:9,5:0.36:14
chr20	19673771	rs6112526	A	G	151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.363;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.12;ReadPosRankSum=-0.472;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:10,5:0.33:15
chr20	19673862	rs11481303	A	AT	562.73	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:39,36:0.48:75
chr20	19915611	rs374156281	TA	T	169.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.527;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=2.333;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.02;ReadPosRankSum=-1.165;SOR=0.411;set=HC	GT:AD:AF:DP	0/1:55,29:0.35:84
chr20	20003196	rs74802177	A	C	135.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:10,6:0.38:16
chr20	20018882	.	T	TA	329.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.252;ClippingRankSum=0.000;DP=103;ExcessHet=3.0103;FS=0.989;MLEAC=1;MLEAF=0.500;MQ=60.52;MQRankSum=3.031;QD=3.51;ReadPosRankSum=1.613;SOR=0.954;set=HC	GT:AD:AF:DP	0/1:63,31:0.33:94
chr20	20032998	rs2255255	T	C	4249.77	.	AC=1;AF=0.500;AN=2;DB;DP=442;set=Intersection	GT:AD:AF:DP	0/1:233,196:0.46:429
chr20	20033137	rs2255258	T	A	7394.77	.	AC=1;AF=0.500;AN=2;DB;DP=779;set=Intersection	GT:AD:AF:DP	0/1:401,365:0.48:766
chr20	20033242	rs2273057	A	T	3574.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:184,162:0.47:346
chr20	20033319	rs2273058	A	G	2354.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:109,106:0.49:215
chr20	20033367	rs7508949	C	G	1641.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:83,79:0.49:162
chr20	20033380	rs3817995	A	G	1564.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:75,74:0.50:149
chr20	20033423	rs6046572	G	A	784.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.981;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=2.880;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.26;ReadPosRankSum=2.065;SOR=1.108;set=HC	GT:AD:AF:DP	0/1:57,38:0.40:95
chr20	20037222	rs1509573	T	C	392.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:23,18:0.44:41
chr20	20050397	rs200183	G	A	4068.77	.	AC=1;AF=0.500;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	0/1:213,200:0.48:413
chr20	20056038	rs11482118	T	TA	1107.73	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:61,46:0.43:107
chr20	20056042	.	C	T	1465.77	.	AC=1;AF=0.500;AN=2;DP=116;set=Intersection	GT:AD:AF:DP	0/1:51,62:0.55:113
chr20	20079251	.	CA	C	335.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.228;ClippingRankSum=0.000;DP=68;ExcessHet=3.0103;FS=1.169;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.50;ReadPosRankSum=-1.477;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:23,38:0.62:61
chr20	20139951	rs11475376	GC	G	8514.73	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr20	20140196	rs2179823	T	C	1420.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr20	20144772	rs6081901	G	A	4020.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:2,155:0.99:157
chr20	20146875	rs6046679	C	T	743.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr20	20146934	rs6106204	G	A	2237.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr20	20150182	rs6112802	A	T	4387.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr20	20152372	rs11696933	A	G	2807.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr20	20152462	rs996197	A	C	8300.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr20	20152581	rs2328500	G	A	3666.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr20	20168497	rs2179825	A	G	1997.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr20	20208850	rs10485596	C	T	310.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:35,16:0.31:51
chr20	20257958	rs2424317	C	T	3212.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:123,151:0.55:274
chr20	20350516	rs6137007	T	G	5985.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr20	20377421	rs11426947	A	AC	15488.73	.	AC=2;AF=1.00;AN=2;DB;DP=500;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.04;QD=31.80;SOR=0.801;set=HC	GT:AD:AF:DP	1/1:0,487:1.00:487
chr20	20445793	rs5840886	T	TCACACA,TCACACACA	1812.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.504;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=35.54;ReadPosRankSum=-0.098;SOR=1.179;set=HC	GT:AD:AF:DP	1/2:4,21,26:0.41,0.51:51
chr20	20493222	rs35039408	G	A	11012.77	.	AC=2;AF=1.00;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	1/1:1,385:1.00:386
chr20	20504977	rs56098181	A	G	1256.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:76,65:0.46:141
chr20	20609964	.	AAC	A	276.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.240;ClippingRankSum=0.000;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.61;ReadPosRankSum=0.663;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:81,25:0.24:106
chr20	21106714	rs5840900	C	CG	12628.73	.	AC=2;AF=1.00;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	1/1:0,357:1.00:357
chr20	21117240	rs11476720	GT	G	435.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.052;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=3.507;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=0.646;QD=10.63;ReadPosRankSum=0.000;SOR=1.688;set=HC	GT:AD:AF:DP	0/1:10,31:0.76:41
chr20	21126194	rs6047271	C	G	1966.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr20	21142441	rs11482798	G	GA	646.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.685;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=1.904;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.30;ReadPosRankSum=1.780;SOR=0.435;set=HC	GT:AD:AF:DP	0/1:66,56:0.46:122
chr20	21142454	rs11482592	A	AC	823.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.017;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=1.595;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.35;ReadPosRankSum=1.634;SOR=0.855;set=HC	GT:AD:AF:DP	0/1:98,56:0.36:154
chr20	21142523	rs4815025	C	G	12480.77	.	AC=2;AF=1.00;AN=2;DB;DP=444;set=Intersection	GT:AD:AF:DP	1/1:0,438:1.00:438
chr20	21142813	rs2236178	T	C	19916.77	.	AC=2;AF=1.00;AN=2;DB;DP=770;set=Intersection	GT:AD:AF:DP	1/1:0,754:1.00:754
chr20	21186161	rs11087346	A	AG	10474.73	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr20	21186296	rs11321878	TA	T	356.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.655;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.000;QD=3.00;ReadPosRankSum=0.754;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:72,47:0.39:119
chr20	21227314	rs6047326	C	T	2527.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr20	21307107	rs2296728	A	G	7087.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr20	21307273	rs200920750	G	GT	792.73	.	AC=1;AF=0.500;AN=2;DB;DP=130;MQ=60.08;set=Intersection	GT:AD:AF:DP	0/1:60,53:0.47:113
chr20	21313109	rs11481754	T	TA	2709.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.568;ClippingRankSum=0.000;DB;DP=219;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=0.000;QD=16.13;ReadPosRankSum=0.119;SOR=0.811;set=HC	GT:AD:AF:DP	1/1:19,149:0.89:168
chr20	21319828	rs202844	A	G	2845.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr20	21321294	rs202845	C	T	1889.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr20	21328715	rs11087351	GT	G	2083.73	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr20	21336825	rs3787500	G	A	6430.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr20	21346441	rs11467475	TATATA	T	593.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr20	21362703	rs11476840	TA	T	9807.73	.	AC=2;AF=1.00;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	1/1:2,387:0.99:389
chr20	21362758	rs6047417	T	G	6168.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;MQ=60.24;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr20	21695030	rs17861056	C	T	455.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:21,20:0.49:41
chr20	22562674	rs1212275	T	C	13356.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.078;ClippingRankSum=0.000;DB;DP=522;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=27.31;ReadPosRankSum=0.530;SOR=0.421;set=HC	GT:AD:AF:DP	1/1:3,486:0.99:489
chr20	23017017	rs2567609	T	C	9968.77	.	AC=1;AF=0.500;AN=2;DB;DP=1042;set=Intersection	GT:AD:AF:DP	0/1:558,478:0.46:1036
chr20	23017082	rs2567608	T	C	9224.77	.	AC=1;AF=0.500;AN=2;DB;DP=922;set=Intersection	GT:AD:AF:DP	0/1:488,431:0.47:919
chr20	23064810	rs11087413	C	T	6686.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr20	23065209	rs3746731	G	A	13602.77	.	AC=2;AF=1.00;AN=2;DB;DP=484;set=Intersection	GT:AD:AF:DP	1/1:0,479:1.00:479
chr20	23065342	rs3746732	A	G	12528.77	.	AC=2;AF=1.00;AN=2;DB;DP=472;set=Intersection	GT:AD:AF:DP	1/1:0,465:1.00:465
chr20	23345844	rs6048760	A	C	1806.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:126,92:0.42:218
chr20	23346515	rs6137910	C	G	1099.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:49,51:0.51:100
chr20	23347553	rs999072	C	T	185.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr20	23350525	rs17830281	C	T	748.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:32,31:0.49:63
chr20	23360369	rs6137917	G	A	757.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:37,35:0.49:72
chr20	23377642	rs3736755	C	T	1523.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:84,74:0.47:158
chr20	23401904	.	ACC	A,AC	13108.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.439;ClippingRankSum=0.000;DP=492;ExcessHet=3.0103;FS=2.172;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=27.95;ReadPosRankSum=1.005;SOR=0.554;set=HC	GT:AD:AF:DP	1/2:10,311,148:0.66,0.32:469
chr20	23421101	rs17757442	G	A	6066.77	.	AC=1;AF=0.500;AN=2;DB;DP=689;set=Intersection	GT:AD:AF:DP	0/1:386,295:0.43:681
chr20	23424613	rs3746736	T	C	2774.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:140,135:0.49:275
chr20	23424638	rs3746737	C	T	3573.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:158,171:0.52:329
chr20	23472391	rs2983288	A	G	6340.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:1,244:1.00:245
chr20	23476412	.	CTTT	C,CT	3681.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.440;ClippingRankSum=0.000;DP=182;ExcessHet=3.0103;FS=2.305;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.18;MQRankSum=0.330;QD=21.53;ReadPosRankSum=1.124;SOR=1.798;set=HC	GT:AD:AF:DP	1/2:25,56,90:0.33,0.53:171
chr20	23528536	rs6076084	T	C	2133.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:89,104:0.54:193
chr20	23528662	rs6083145	G	A	326.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:11,13:0.54:24
chr20	23529377	rs3004129	G	A	4929.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr20	23529388	rs2983611	C	T	939.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:110,51:0.32:161
chr20	23529418	rs6083147	G	C	2690.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:74,119:0.62:193
chr20	23530941	rs1028560	A	G	988.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:29,39:0.57:68
chr20	23531276	rs1028561	G	A	1785.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:91,78:0.46:169
chr20	23546639	rs2295564	T	G	5898.77	.	AC=1;AF=0.500;AN=2;DB;DP=452;MQ=59.98;set=Intersection	GT:AD:AF:DP	0/1:187,255:0.58:442
chr20	23546871	rs2208284	T	C	1871.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:105,78:0.43:183
chr20	23548774	rs2983617	T	C	5714.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr20	23549166	rs6083172	C	A	1295.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:48,53:0.52:101
chr20	23584116	rs726217	G	A	3294.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:146,150:0.51:296
chr20	23586184	rs2983639	T	C	2994.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr20	23586360	rs2983640	G	A	2386.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:153,130:0.46:283
chr20	23615819	.	TCA	T	3976.73	.	AC=1;AF=0.500;AN=2;DP=254;set=Intersection	GT:AD:AF:DP	0/1:75,150:0.67:225
chr20	23618395	rs6138024	T	C	3414.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr20	23618427	rs1064039	C	T	812.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:59,41:0.41:100
chr20	23618571	rs73318135	T	G	331.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:21,18:0.46:39
chr20	23618652	rs71334202	A	C	409.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.665;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=1.527;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.18;ReadPosRankSum=-0.640;SOR=0.943;set=HC	GT:AD:AF:DP	0/1:15,12:0.44:27
chr20	23618656	rs5030707	C	G	409.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.634;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.76;ReadPosRankSum=-0.604;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:15,11:0.42:26
chr20	23666690	rs2282378	C	G	1224.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:57,55:0.49:112
chr20	23669630	rs7267397	A	G	2651.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:120,117:0.49:237
chr20	23669663	rs111248870	C	T	1621.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:77,74:0.49:151
chr20	23728342	rs2982	G	A	660.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:25,28:0.53:53
chr20	23729722	rs3188314	G	T	35358.77	.	AC=2;AF=1.00;AN=2;DB;DP=1301;set=Intersection	GT:AD:AF:DP	1/1:0,1298:1.00:1298
chr20	23731494	rs6076122	A	G	10897.77	.	AC=2;AF=1.00;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	1/1:1,396:1.00:397
chr20	23731560	rs6076123	C	T	3804.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:1,123:0.99:124
chr20	23731589	rs113896553	G	C	1383.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:42,51:0.55:93
chr20	23805832	rs6036548	G	A	7470.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:2,264:0.99:266
chr20	23807028	rs4407312	A	C	15060.77	.	AC=2;AF=1.00;AN=2;DB;DP=565;set=Intersection	GT:AD:AF:DP	1/1:0,564:1.00:564
chr20	24524218	rs4815274	C	G	8662.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr20	24524245	rs4813519	A	G	5533.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr20	25004071	rs4813543	G	T	996.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:73,47:0.39:120
chr20	25027526	rs6083730	G	A	14933.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.096;ClippingRankSum=0.000;DB;DP=584;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.84;ReadPosRankSum=0.662;SOR=0.485;set=HC	GT:AD:AF:DP	1/1:5,573:0.99:578
chr20	25027630	rs6106989	G	A	4353.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:1,149:0.99:150
chr20	25027692	rs6115015	G	A	1799.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:2,58:0.97:60
chr20	25176296	rs6083773	A	C	2245.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr20	25187213	rs2076559	G	A	3584.77	.	AC=1;AF=0.500;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	0/1:173,172:0.50:345
chr20	25187575	rs11699392	A	G	1555.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:48,62:0.56:110
chr20	25190598	rs1007707	A	G	2174.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:116,99:0.46:215
chr20	25193863	rs2076560	T	C	3015.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:179,144:0.45:323
chr20	25193949	rs2076561	G	A	4162.77	.	AC=1;AF=0.500;AN=2;DB;DP=453;set=Intersection	GT:AD:AF:DP	0/1:236,211:0.47:447
chr20	25195394	rs6050445	C	T	252.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:16,11:0.41:27
chr20	25195509	rs6050446	A	G	4524.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr20	25197982	rs4815394	T	C	5091.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr20	25203663	.	C	G	589	.	AC=1;AF=0.500;AN=2;BRF=0.43;FR=0.5000;HP=10;HapScore=2;MGOF=12;MMLQ=22;MQ=59.3;NF=0;NR=38;PP=589;QD=16.4150319091;SC=CGGCAGGGGGCGGGGGTGGAG;SbPval=1.0;Source=Platypus;TC=103;TCF=29;TCR=74;TR=38;WE=25203671;WS=25203653;set=Platypus	GT:AD:AF:DP	0/1:65,38:0.37:103
chr20	25229231	rs2273473	C	G	89.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:12,5:0.29:17
chr20	25255205	rs55654244	C	T	2696.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:84,118:0.58:202
chr20	25257202	rs2281561	A	G	1838.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:82,76:0.48:158
chr20	25257462	rs2424699	G	A	7055.77	.	AC=1;AF=0.500;AN=2;DB;DP=617;set=Intersection	GT:AD:AF:DP	0/1:274,332:0.55:606
chr20	25258916	rs11466827	G	GCCCTGGGACTGGGTCATGGGGCATGTGCC	1385.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.216;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=1.621;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.28;ReadPosRankSum=-0.182;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:28,21:0.43:49
chr20	25259200	rs2261109	T	C	1526.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:76,67:0.47:143
chr20	25259807	rs2261115	G	A	3717.77	.	AC=1;AF=0.500;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	0/1:199,178:0.47:377
chr20	25260931	rs2227890	A	G	7152.77	.	AC=1;AF=0.500;AN=2;DB;DP=740;set=Intersection	GT:AD:AF:DP	0/1:381,356:0.48:737
chr20	25261784	rs2261747	G	A	2900.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:172,146:0.46:318
chr20	25262536	rs10582106	TCTC	T	643.73	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:21,18:0.46:39
chr20	25262789	rs2261790	T	C	644.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:32,30:0.48:62
chr20	25263648	rs2145126	G	A	455.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:14,22:0.61:36
chr20	25263895	rs2228977	C	T	2501.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:154,128:0.45:282
chr20	25264664	rs2257705	T	C	1640.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:73,76:0.51:149
chr20	25264814	rs2227892	T	C	3080.77	.	AC=1;AF=0.500;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	0/1:197,161:0.45:358
chr20	25264910	rs2257712	T	C	596.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:68,34:0.33:102
chr20	25268920	rs3002702	T	C	2695.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:138,125:0.48:263
chr20	25270339	rs2257991	T	C	1918.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:66,74:0.53:140
chr20	25271086	rs2257432	T	C	1954.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:57,83:0.59:140
chr20	25271286	rs6115130	A	G	3368.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:150,152:0.50:302
chr20	25271326	rs2258066	C	T	1729.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:97,82:0.46:179
chr20	25273362	rs2281562	G	A	1432.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:51,65:0.56:116
chr20	25274951	rs13042337	G	A	3354.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.277;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=2.118;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.43;ReadPosRankSum=1.266;SOR=0.936;set=HC	GT:AD:AF:DP	0/1:91,91:0.50:182
chr20	25274953	rs13043183	T	G	3354.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.601;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=3.066;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.85;ReadPosRankSum=1.700;SOR=1.013;set=HC	GT:AD:AF:DP	0/1:91,87:0.49:178
chr20	25275553	rs16436	GTTAGTT	G	2134.73	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:46,56:0.55:102
chr20	25275843	rs2258719	C	T	621.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:21,28:0.57:49
chr20	25276297	rs1130694	G	A	4244.77	.	AC=1;AF=0.500;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	0/1:151,198:0.57:349
chr20	25276343	rs2258728	G	A	3871.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:138,184:0.57:322
chr20	25281398	rs2424708	C	T	2625.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:93,108:0.54:201
chr20	25282944	rs10966	A	G	873.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:51,43:0.46:94
chr20	25284124	rs45545632	C	A	1071.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:60,51:0.46:111
chr20	25284343	rs2260197	T	C	3102.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:130,150:0.54:280
chr20	25288505	rs884613	C	T	160.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.440;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=11.553;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.37;ReadPosRankSum=0.465;SOR=4.174;set=HC	GT:AD:AF:DP	0/1:6,7:0.54:13
chr20	25288632	rs6107027	G	A	1379.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:72,65:0.47:137
chr20	25295787	rs2297496	T	C	609.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:46,31:0.40:77
chr20	25301022	rs2274890	G	A	700.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:41,32:0.44:73
chr20	25320228	rs6050544	T	A	5898.77	.	AC=1;AF=0.500;AN=2;DB;DP=567;set=Intersection	GT:AD:AF:DP	0/1:274,281:0.51:555
chr20	25371112	rs139848340	GGCCCCC	G	2212.75	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.788;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=1.856;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=37.50;ReadPosRankSum=2.208;SOR=0.742;set=HC	GT:AD:AF:DP	1/1:5,54:0.92:59
chr20	25371125	rs77202707	C	G	2191.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.537;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=3.410;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=35.35;ReadPosRankSum=4.065;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:8,54:0.87:62
chr20	25371378	rs145380090	G	GGCCTCCGCC	729.73	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:17,21:0.55:38
chr20	25398790	rs6076347	G	A	3952.77	.	AC=1;AF=0.500;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	0/1:183,189:0.51:372
chr20	25398876	rs4815425	G	C	1595.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:78,68:0.47:146
chr20	25426693	rs5841057	CA	C	5016.73	.	AC=1;AF=0.500;AN=2;DB;DP=292;MQ=60.15;set=Intersection	GT:AD:AF:DP	0/1:142,147:0.51:289
chr20	25434139	rs17857107	C	T	2408.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:177,122:0.41:299
chr20	25442097	rs6107047	G	A	640.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:26,28:0.52:54
chr20	25443278	rs113237945	A	ATTTGTTTTGT	338.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.139;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=1.871;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.83;ReadPosRankSum=1.145;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:10,9:0.47:19
chr20	25447896	rs404394	A	G	596.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:38,30:0.44:68
chr20	25447931	rs404148	A	G	1349.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:81,61:0.43:142
chr20	25456888	rs437635	A	G	3986.77	.	AC=1;AF=0.500;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	0/1:181,183:0.50:364
chr20	25457022	rs6115193	T	C	2968.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:159,137:0.46:296
chr20	25457049	rs68078266	GCTCCCA	G	5846.73	.	AC=1;AF=0.500;AN=2;DB;DP=370;MQ=60.09;set=Intersection	GT:AD:AF:DP	0/1:207,158:0.43:365
chr20	25459764	rs11905437	T	G	3973.77	.	AC=1;AF=0.500;AN=2;DB;DP=441;MQ=59.97;set=Intersection	GT:AD:AF:DP	0/1:231,202:0.47:433
chr20	25459919	rs84816	G	A	2514.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:101,116:0.53:217
chr20	25470056	rs431579	T	C	768.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:47,37:0.44:84
chr20	25478962	rs41274450	G	A	2107.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:92,105:0.53:197
chr20	25479058	rs400357	A	G	541.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:56,29:0.34:85
chr20	25520691	rs73111222	T	A	4013.77	.	AC=1;AF=0.500;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	0/1:175,190:0.52:365
chr20	25520827	rs11472175	A	AAC	11276.73	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr20	25666642	rs6115256	C	T	2757.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:106,130:0.55:236
chr20	25755527	rs199613392	G	A	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.312;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=2.218;MLEAC=1;MLEAF=0.500;MQ=56.93;MQRankSum=-3.873;QD=3.10;ReadPosRankSum=1.268;SOR=0.250;set=HC	GT:AD:AF:DP	0/1:12,5:0.29:17
chr20	25755558	rs113169583	G	T	136.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.420;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=6.043;MLEAC=1;MLEAF=0.500;MQ=57.50;MQRankSum=-4.256;QD=6.84;ReadPosRankSum=1.184;SOR=0.078;set=HC	GT:AD:AF:DP	0/1:15,5:0.25:20
chr20	25755574	.	G	A	139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.785;ClippingRankSum=0.000;DP=20;ExcessHet=3.0103;FS=7.656;MLEAC=1;MLEAF=0.500;MQ=57.24;MQRankSum=-4.005;QD=7.76;ReadPosRankSum=-1.190;SOR=0.041;set=HC	GT:AD:AF:DP	0/1:13,5:0.28:18
chr20	25755583	.	C	T	49.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.624;ClippingRankSum=0.000;DP=21;ExcessHet=3.0103;FS=6.539;MLEAC=1;MLEAF=0.500;MQ=57.71;MQRankSum=-4.154;QD=2.62;ReadPosRankSum=-0.508;SOR=0.875;set=HC	GT:AD:AF:DP	0/1:16,3:0.16:19
chr20	25755585	.	C	T	49.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.864;ClippingRankSum=0.000;DP=21;ExcessHet=3.0103;FS=6.539;MLEAC=1;MLEAF=0.500;MQ=57.71;MQRankSum=-4.154;QD=2.62;ReadPosRankSum=-0.682;SOR=0.875;set=HC	GT:AD:AF:DP	0/1:16,3:0.16:19
chr20	25755988	.	AAG	A	48.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.556;ClippingRankSum=0.000;DP=210;ExcessHet=3.0103;FS=1.077;MLEAC=1;MLEAF=0.500;MQ=59.14;MQRankSum=-0.453;QD=0.32;ReadPosRankSum=-1.027;SOR=0.494;set=HC	GT:AD:AF:DP	0/1:136,18:0.12:154
chr20	25829184	rs74788234	A	G	2752.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:103,91:0.47:194
chr20	25829290	rs75735480	G	T	4766.77	.	AC=1;AF=0.500;AN=2;DB;DP=745;set=Intersection	GT:AD:AF:DP	0/1:575,154:0.21:729
chr20	25829292	rs76588078	C	T	4771.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.631;ClippingRankSum=0.000;DB;DP=759;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.67;MQRankSum=-23.237;QD=6.33;ReadPosRankSum=5.855;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:598,156:0.21:754
chr20	25829312	rs78355493	G	T	5327.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.596;ClippingRankSum=0.000;DB;DP=855;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.77;MQRankSum=-25.367;QD=6.28;ReadPosRankSum=2.661;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:673,175:0.21:848
chr20	25829319	rs76467023	A	G	7146.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.377;ClippingRankSum=0.000;DB;DP=879;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.77;MQRankSum=-29.024;QD=8.20;ReadPosRankSum=-0.185;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:653,219:0.25:872
chr20	25829342	rs75063166	T	C	8934.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.815;ClippingRankSum=0.000;DB;DP=898;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.01;MQRankSum=-28.194;QD=9.99;ReadPosRankSum=-7.581;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:634,260:0.29:894
chr20	25829352	rs74961672	T	C	8355.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.623;ClippingRankSum=0.000;DB;DP=845;ExcessHet=3.0103;FS=1.225;MLEAC=1;MLEAF=0.500;MQ=54.87;MQRankSum=-26.861;QD=9.91;ReadPosRankSum=-7.633;SOR=0.865;set=HC	GT:AD:AF:DP	0/1:595,248:0.29:843
chr20	25829384	rs75757905	T	C	4784.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.592;ClippingRankSum=0.000;DB;DP=582;ExcessHet=3.0103;FS=10.223;MLEAC=1;MLEAF=0.500;MQ=55.15;MQRankSum=-21.051;QD=8.26;ReadPosRankSum=3.722;SOR=1.413;set=HC	GT:AD:AF:DP	0/1:432,147:0.25:579
chr20	25829384	.	TTA	CTG	2944	.	AC=1;AF=0.500;AN=2;BRF=0.49;FR=0.5000;HP=1;HapScore=1;MGOF=54;MMLQ=28;MQ=47.15;NF=85;NR=162;PP=2944;QD=20;SC=AGTTCGCAAGTTAGGCTTCCT;SbPval=0.68;Source=Platypus;TC=567;TCF=212;TCR=355;TR=247;WE=25829394;WS=25829374;set=Platypus	GT:AD:AF:DP	1/0:320,247:0.44:567
chr20	25829386	rs74835374	A	G	4787.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.466;ClippingRankSum=0.000;DB;DP=567;ExcessHet=3.0103;FS=10.244;MLEAC=1;MLEAF=0.500;MQ=54.94;MQRankSum=-20.783;QD=8.49;ReadPosRankSum=3.341;SOR=1.418;set=HC	GT:AD:AF:DP	0/1:414,150:0.27:564
chr20	25829435	rs79037868	C	T	1563.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.572;ClippingRankSum=0.000;DB;DP=388;ExcessHet=3.0103;FS=0.476;MLEAC=1;MLEAF=0.500;MQ=51.76;MQRankSum=-10.046;QD=4.06;ReadPosRankSum=2.163;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:291,94:0.24:385
chr20	25829436	rs73348912	T	C	1180.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.015;ClippingRankSum=0.000;DB;DP=378;ExcessHet=3.0103;FS=1.720;MLEAC=1;MLEAF=0.500;MQ=51.67;MQRankSum=-9.796;QD=3.15;ReadPosRankSum=0.603;SOR=0.809;set=HC	GT:AD:AF:DP	0/1:297,78:0.21:375
chr20	25829470	rs75119730	A	T	821.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.617;ClippingRankSum=0.000;DB;DP=222;ExcessHet=3.0103;FS=2.899;MLEAC=1;MLEAF=0.500;MQ=50.55;MQRankSum=-6.597;QD=3.70;ReadPosRankSum=0.760;SOR=1.079;set=HC	GT:AD:AF:DP	0/1:172,50:0.23:222
chr20	25900042	rs11699407	A	C	783.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:43,31:0.42:74
chr20	25900078	rs78346173	A	C	963.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:110,51:0.32:161
chr20	25900128	rs79754881	A	T	1211.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.658;ClippingRankSum=0.000;DB;DP=346;ExcessHet=3.0103;FS=14.336;MLEAC=1;MLEAF=0.500;MQ=56.15;MQRankSum=0.185;QD=3.50;ReadPosRankSum=0.409;SOR=1.489;set=HC	GT:AD:AF:DP	0/1:279,67:0.19:346
chr20	25900135	rs11699441	C	A	1192.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.882;ClippingRankSum=0.000;DB;DP=350;ExcessHet=3.0103;FS=15.761;MLEAC=1;MLEAF=0.500;MQ=55.93;MQRankSum=0.739;QD=3.41;ReadPosRankSum=0.958;SOR=1.540;set=HC	GT:AD:AF:DP	0/1:283,67:0.19:350
chr20	25900162	rs6037279	C	T,A	1411.77	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=370;set=Intersection	GT:AF:DP	0/1:0.26:331
chr20	25900190	rs199687742	AAATT	A	1948.73	.	AC=1;AF=0.500;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	0/1:275,67:0.20:342
chr20	26061750	.	T	TTTTTA	1038	.	AC=1;AF=0.500;AN=2;BRF=0.54;FR=0.5000;HP=8;HapScore=1;MGOF=45;MMLQ=26;MQ=49.25;NF=28;NR=13;PP=1038;QD=25.6585365854;SC=TTTGCTCTTTTTTTTTGCTCA;SbPval=0.6;Source=Platypus;TC=85;TCF=57;TCR=28;TR=41;WE=26061758;WS=26061724;set=Platypus	GT:AD:AF:DP	0/1:44,41:0.48:85
chr20	26061859	rs74752031	G	T	1073.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.633;ClippingRankSum=0.000;DB;DP=326;ExcessHet=3.0103;FS=6.839;MLEAC=1;MLEAF=0.500;MQ=57.76;MQRankSum=-13.690;QD=3.32;ReadPosRankSum=-0.892;SOR=0.936;set=HC	GT:AD:AF:DP	0/1:276,47:0.15:323
chr20	26061861	rs375533025	G	T	73.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.682;ClippingRankSum=0.000;DB;DP=321;ExcessHet=3.0103;FS=2.864;MLEAC=1;MLEAF=0.500;MQ=57.80;MQRankSum=-8.818;QD=0.23;ReadPosRankSum=-0.407;SOR=0.896;set=HC	GT:AD:AF:DP	0/1:298,23:0.07:321
chr20	26061876	.	G	GAA	49.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.791;ClippingRankSum=0.000;DP=322;ExcessHet=3.0103;FS=2.754;MLEAC=1;MLEAF=0.500;MQ=58.10;MQRankSum=-10.303;QD=0.15;ReadPosRankSum=-2.633;SOR=0.999;set=HC	GT:AD:AF:DP	0/1:298,24:0.07:322
chr20	26061878	.	GGATC	G	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.823;ClippingRankSum=0.000;DP=312;ExcessHet=3.0103;FS=12.069;MLEAC=1;MLEAF=0.500;MQ=58.30;MQRankSum=-10.631;QD=0.13;ReadPosRankSum=-1.846;SOR=1.900;set=HC	GT:AD:AF:DP	0/1:293,19:0.06:312
chr20	26062036	rs77424811	A	G	231.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.664;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=5.381;MLEAC=1;MLEAF=0.500;MQ=55.72;MQRankSum=-3.152;QD=3.05;ReadPosRankSum=-0.874;SOR=0.567;set=HC	GT:AD:AF:DP	0/1:67,9:0.12:76
chr20	26062047	rs80162470	A	G	276.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.088;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=2.826;MLEAC=1;MLEAF=0.500;MQ=56.40;MQRankSum=-3.004;QD=3.59;ReadPosRankSum=-1.182;SOR=0.303;set=HC	GT:AD:AF:DP	0/1:65,12:0.16:77
chr20	26063560	rs5742261	G	A	3214.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:157,159:0.50:316
chr20	26063625	rs77830989	T	C	315.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.679;ClippingRankSum=0.000;DB;DP=273;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.91;MQRankSum=-15.465;QD=1.16;ReadPosRankSum=0.293;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:247,26:0.10:273
chr20	26063643	rs41275516	G	A	464.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.316;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.60;MQRankSum=-13.662;QD=2.17;ReadPosRankSum=2.537;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:188,26:0.12:214
chr20	26063645	rs73105823	G	A	497.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.544;ClippingRankSum=0.000;DB;DP=212;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.59;MQRankSum=-13.597;QD=2.35;ReadPosRankSum=2.624;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:186,26:0.12:212
chr20	26063684	rs78016604	A	G	491.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.514;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=3.385;MLEAC=1;MLEAF=0.500;MQ=58.05;MQRankSum=-10.346;QD=3.84;ReadPosRankSum=0.531;SOR=0.369;set=HC	GT:AD:AF:DP	0/1:107,21:0.16:128
chr20	26063696	rs374797956	A	T	498.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.237;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=5.387;MLEAC=1;MLEAF=0.500;MQ=57.83;MQRankSum=-9.211;QD=4.80;ReadPosRankSum=-1.375;SOR=0.280;set=HC	GT:AD:AF:DP	0/1:85,19:0.18:104
chr20	26063712	rs113808324	A	T	183.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.925;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=6.182;MLEAC=1;MLEAF=0.500;MQ=58.23;MQRankSum=-8.130;QD=2.48;ReadPosRankSum=-0.253;SOR=0.154;set=HC	GT:AD:AF:DP	0/1:65,9:0.12:74
chr20	26063726	rs199551690	T	C	108.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.361;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=4.493;MLEAC=1;MLEAF=0.500;MQ=58.18;MQRankSum=-7.155;QD=1.84;ReadPosRankSum=-0.755;SOR=0.146;set=HC	GT:AD:AF:DP	0/1:52,7:0.12:59
chr20	26094383	.	C	T	108.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.758;ClippingRankSum=0.000;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.40;MQRankSum=-8.526;QD=1.47;ReadPosRankSum=-3.345;SOR=0.597;set=HC	GT:AD:AF:DP	0/1:67,7:0.09:74
chr20	26094384	.	A	G	108.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.293;ClippingRankSum=0.000;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.24;MQRankSum=-8.702;QD=1.41;ReadPosRankSum=-3.373;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:69,8:0.10:77
chr20	26094406	.	A	AC	386.73	.	AC=1;AF=0.500;AN=2;DP=155;set=Intersection	GT:AD:AF:DP	0/1:114,41:0.26:155
chr20	26094409	.	T	A	859.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.821;ClippingRankSum=0.000;DP=173;ExcessHet=3.0103;FS=25.503;MLEAC=1;MLEAF=0.500;MQ=56.02;MQRankSum=-12.251;QD=4.97;ReadPosRankSum=-2.963;SOR=3.604;set=HC	GT:AD:AF:DP	0/1:118,55:0.32:173
chr20	26094420	.	T	C	2438.77	.	AC=1;AF=0.500;AN=2;DP=252;set=Intersection	GT:AD:AF:DP	0/1:149,103:0.41:252
chr20	26094475	rs374094583	AC	A	13997.73	.	AC=1;AF=0.500;AN=2;DB;DP=805;set=Intersection	GT:AD:AF:DP	0/1:438,366:0.46:804
chr20	26094483	rs146324498	CAT	C	14183.73	.	AC=1;AF=0.500;AN=2;DB;DP=899;set=Intersection	GT:AD:AF:DP	0/1:499,387:0.44:886
chr20	26094564	rs79802274	T	G	14274.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.529;ClippingRankSum=0.000;DB;DP=1317;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.77;MQRankSum=-3.761;QD=11.01;ReadPosRankSum=-0.327;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:640,656:0.51:1296
chr20	26094567	rs62211581	T	C	26396.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.883;ClippingRankSum=0.000;DB;DP=1294;ExcessHet=3.0103;FS=0.521;MLEAC=1;MLEAF=0.500;MQ=57.73;MQRankSum=-9.865;QD=20.74;ReadPosRankSum=1.543;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:577,696:0.55:1273
chr20	26094605	rs150462295	G	A	15791.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.394;ClippingRankSum=0.000;DB;DP=859;ExcessHet=3.0103;FS=0.523;MLEAC=1;MLEAF=0.500;MQ=56.29;MQRankSum=-3.070;QD=18.43;ReadPosRankSum=-2.531;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:436,421:0.49:857
chr20	26094609	rs80248029	C	A	15524.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.569;ClippingRankSum=0.000;DB;DP=814;ExcessHet=3.0103;FS=0.523;MLEAC=1;MLEAF=0.500;MQ=56.09;MQRankSum=-3.040;QD=19.10;ReadPosRankSum=-2.588;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:415,398:0.49:813
chr20	26094638	rs76011113	C	T	5461.77	.	AC=1;AF=0.500;AN=2;DB;DP=492;set=Intersection	GT:AD:AF:DP	0/1:264,227:0.46:491
chr20	26094651	rs77014314	T	C	2719.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.275;ClippingRankSum=0.000;DB;DP=392;ExcessHet=3.0103;FS=10.304;MLEAC=1;MLEAF=0.500;MQ=53.50;MQRankSum=-8.459;QD=7.12;ReadPosRankSum=0.621;SOR=1.200;set=HC	GT:AD:AF:DP	0/1:234,148:0.39:382
chr20	26094660	rs75350116	T	C	6042.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.038;ClippingRankSum=0.000;DB;DP=308;ExcessHet=3.0103;FS=3.163;MLEAC=1;MLEAF=0.500;MQ=52.11;MQRankSum=-11.476;QD=19.68;ReadPosRankSum=-0.898;SOR=0.932;set=HC	GT:AD:AF:DP	0/1:145,162:0.53:307
chr20	26094689	rs79312112	A	C	2166.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:90,83:0.48:173
chr20	26189059	.	C	G	3715.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.224;ClippingRankSum=0.000;DP=573;ExcessHet=3.0103;FS=0.661;MLEAC=1;MLEAF=0.500;MQ=59.26;MQRankSum=-9.942;QD=6.68;ReadPosRankSum=1.049;SOR=0.785;set=HC	GT:AD:AF:DP	0/1:436,120:0.22:556
chr20	26189065	.	G	A	3329.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.287;ClippingRankSum=0.000;DP=506;ExcessHet=3.0103;FS=0.677;MLEAC=1;MLEAF=0.500;MQ=59.17;MQRankSum=-9.861;QD=6.81;ReadPosRankSum=0.992;SOR=0.798;set=HC	GT:AD:AF:DP	0/1:385,104:0.21:489
chr20	26189075	.	T	C	2886.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.145;ClippingRankSum=0.000;DP=431;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.98;MQRankSum=-10.046;QD=6.97;ReadPosRankSum=-1.371;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:325,89:0.21:414
chr20	26189080	.	C	T	2655.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.120;ClippingRankSum=0.000;DP=399;ExcessHet=3.0103;FS=1.611;MLEAC=1;MLEAF=0.500;MQ=58.91;MQRankSum=-9.852;QD=6.95;ReadPosRankSum=-2.109;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:297,85:0.22:382
chr20	26189097	.	G	A	1281.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.099;ClippingRankSum=0.000;DP=301;ExcessHet=3.0103;FS=9.600;MLEAC=1;MLEAF=0.500;MQ=58.70;MQRankSum=-10.336;QD=4.48;ReadPosRankSum=-1.343;SOR=1.479;set=HC	GT:AD:AF:DP	0/1:232,54:0.19:286
chr20	26189104	.	G	A	1090.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.175;ClippingRankSum=0.000;DP=265;ExcessHet=3.0103;FS=36.564;MLEAC=1;MLEAF=0.500;MQ=58.52;MQRankSum=-11.898;QD=4.33;ReadPosRankSum=1.416;SOR=4.986;set=HC	GT:AD:AF:DP	0/1:214,38:0.15:252
chr20	26189108	rs5000466	A	C	908.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.124;ClippingRankSum=0.000;DB;DP=237;ExcessHet=3.0103;FS=29.302;MLEAC=1;MLEAF=0.500;MQ=58.43;MQRankSum=-11.515;QD=4.00;ReadPosRankSum=1.455;SOR=4.419;set=HC	GT:AD:AF:DP	0/1:192,35:0.15:227
chr20	26189110	.	G	A	863.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.579;ClippingRankSum=0.000;DP=226;ExcessHet=3.0103;FS=27.240;MLEAC=1;MLEAF=0.500;MQ=58.38;MQRankSum=-11.114;QD=4.00;ReadPosRankSum=1.189;SOR=4.364;set=HC	GT:AD:AF:DP	0/1:182,34:0.16:216
chr20	26189115	.	A	C	746.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.685;ClippingRankSum=0.000;DP=211;ExcessHet=3.0103;FS=19.846;MLEAC=1;MLEAF=0.500;MQ=58.26;MQRankSum=-11.351;QD=3.68;ReadPosRankSum=1.613;SOR=3.894;set=HC	GT:AD:AF:DP	0/1:172,31:0.15:203
chr20	26189116	.	C	T	746.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.700;ClippingRankSum=0.000;DP=208;ExcessHet=3.0103;FS=20.042;MLEAC=1;MLEAF=0.500;MQ=58.23;MQRankSum=-11.260;QD=3.73;ReadPosRankSum=1.461;SOR=3.858;set=HC	GT:AD:AF:DP	0/1:169,31:0.15:200
chr20	29625745	rs73621455	A	T	4648.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=14.043;ClippingRankSum=0.000;DB;DP=280;ExcessHet=3.0103;FS=14.854;MLEAC=1;MLEAF=0.500;MQ=49.33;MQRankSum=-7.557;QD=16.72;ReadPosRankSum=-0.469;SOR=2.632;set=HC	GT:AD:AF:DP	0/1:118,160:0.58:278
chr20	29625769	rs78251253	C	T	719.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.495;ClippingRankSum=0.000;DB;DP=570;ExcessHet=3.0103;FS=1.131;MLEAC=1;MLEAF=0.500;MQ=52.32;MQRankSum=-9.280;QD=1.27;ReadPosRankSum=-2.771;SOR=0.986;set=HC	GT:AD:AF:DP	0/1:507,61:0.11:568
chr20	29625788	rs4635596	C	T	11578.77	.	AC=1;AF=0.500;AN=2;DB;DP=915;set=Intersection	GT:AD:AF:DP	0/1:411,497:0.55:908
chr20	29625838	rs62198353	C	A	31000.77	.	AC=1;AF=0.500;AN=2;DB;DP=1610;set=Intersection	GT:AD:AF:DP	0/1:439,1161:0.73:1600
chr20	29625845	.	A	C	904.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.828;ClippingRankSum=0.000;DP=1713;ExcessHet=3.0103;FS=1.004;MLEAC=1;MLEAF=0.500;MQ=53.02;MQRankSum=-9.405;QD=0.53;ReadPosRankSum=3.597;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:1567,135:0.08:1702
chr20	29625865	.	A	C	206.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.593;ClippingRankSum=0.000;DP=1944;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.91;MQRankSum=-8.744;QD=0.11;ReadPosRankSum=2.842;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:1803,136:0.07:1939
chr20	29625867	rs148671283	G	A	184.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.949;ClippingRankSum=0.000;DB;DP=1956;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.88;MQRankSum=-4.211;QD=0.09;ReadPosRankSum=1.370;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:1813,138:0.07:1951
chr20	29625875	.	T	C	146.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-3.439;ClippingRankSum=0.000;DP=1980;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.86;MQRankSum=-8.512;QD=0.07;ReadPosRankSum=0.498;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:1839,137:0.07:1976
chr20	29625876	rs73611718	C	T	19725.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=1984;set=Intersection	GT:AD:AF:DP	0/1:1115,864:0.44:1979
chr20	29625924	.	A	ACTT	947.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.443;ClippingRankSum=0.000;DP=1265;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.19;MQRankSum=-7.296;QD=0.81;ReadPosRankSum=2.109;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:1059,115:0.10:1174
chr20	29625925	rs112430454	C	CTTG	12633.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=1238;set=Intersection	GT:AD:AF:DP	0/1:657,360:0.35:1017
chr20	29625928	.	G	A	1309.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.594;ClippingRankSum=0.000;DP=1124;ExcessHet=3.0103;FS=0.883;MLEAC=1;MLEAF=0.500;MQ=51.72;MQRankSum=-7.590;QD=1.18;ReadPosRankSum=-0.179;SOR=0.783;set=HC	GT:AD:AF:DP	0/1:988,119:0.11:1107
chr20	29625935	rs62198354	A	G	16629.77	.	AC=1;AF=0.500;AN=2;DB;DP=897;set=Intersection	GT:AD:AF:DP	0/1:478,415:0.46:893
chr20	29625946	rs80340867	A	G	1422.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.288;ClippingRankSum=0.000;DB;DP=769;ExcessHet=3.0103;FS=0.912;MLEAC=1;MLEAF=0.500;MQ=52.08;MQRankSum=-9.462;QD=1.86;ReadPosRankSum=-1.080;SOR=0.900;set=HC	GT:AD:AF:DP	0/1:685,81:0.11:766
chr20	29625950	rs78096528	G	A	1556.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.387;ClippingRankSum=0.000;DB;DP=745;ExcessHet=3.0103;FS=1.932;MLEAC=1;MLEAF=0.500;MQ=52.19;MQRankSum=-9.288;QD=2.10;ReadPosRankSum=-1.470;SOR=0.883;set=HC	GT:AD:AF:DP	0/1:661,81:0.11:742
chr20	29625965	rs79873624	G	A	1872.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.378;ClippingRankSum=0.000;DB;DP=680;ExcessHet=3.0103;FS=2.982;MLEAC=1;MLEAF=0.500;MQ=52.48;MQRankSum=-6.583;QD=2.77;ReadPosRankSum=-1.625;SOR=1.138;set=HC	GT:AD:AF:DP	0/1:592,84:0.12:676
chr20	29625985	rs79368216	G	A	2018.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.046;ClippingRankSum=0.000;DB;DP=581;ExcessHet=3.0103;FS=4.242;MLEAC=1;MLEAF=0.500;MQ=52.05;MQRankSum=-5.393;QD=3.52;ReadPosRankSum=-0.487;SOR=1.118;set=HC	GT:AD:AF:DP	0/1:488,86:0.15:574
chr20	29625997	rs62198355	A	T	4872.77	.	AC=1;AF=0.500;AN=2;DB;DP=504;set=Intersection	GT:AD:AF:DP	0/1:294,205:0.41:499
chr20	29626027	rs2137756	C	T	3809.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:196,155:0.44:351
chr20	29628099	rs73621498	G	C	1562.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.551;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=15.746;MLEAC=1;MLEAF=0.500;MQ=52.60;MQRankSum=-11.197;QD=11.66;ReadPosRankSum=0.700;SOR=3.635;set=HC	GT:AD:AF:DP	0/1:87,47:0.35:134
chr20	29628112	rs73621499	C	A	2801.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.480;ClippingRankSum=0.000;DB;DP=212;ExcessHet=3.0103;FS=38.285;MLEAC=1;MLEAF=0.500;MQ=51.16;MQRankSum=-13.671;QD=13.34;ReadPosRankSum=-2.865;SOR=3.901;set=HC	GT:AD:AF:DP	0/1:122,88:0.42:210
chr20	29628125	.	TG	CA	955.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.971;ClippingRankSum=0.000;DP=350;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=48.06;MQRankSum=-5.174;QD=2.75;ReadPosRankSum=-1.026;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:302,46:0.13:348
chr20	29628128	rs73621500	C	T	8356.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.879;ClippingRankSum=0.000;DB;DP=380;ExcessHet=3.0103;FS=17.849;MLEAC=1;MLEAF=0.500;MQ=47.97;MQRankSum=-16.376;QD=22.83;ReadPosRankSum=-6.579;SOR=1.582;set=HC	GT:AD:AF:DP	0/1:155,211:0.58:366
chr20	29628136	rs73621501	T	G	8009.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.333;ClippingRankSum=0.000;DB;DP=532;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=49.57;MQRankSum=-13.182;QD=15.11;ReadPosRankSum=-5.332;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:274,256:0.48:530
chr20	29628158	rs73605203	G	A	14976.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.452;ClippingRankSum=0.000;DB;DP=1002;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.82;MQRankSum=-14.238;QD=15.01;ReadPosRankSum=-2.618;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:490,508:0.51:998
chr20	29628164	rs62199575	G	A	28419.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.053;ClippingRankSum=0.000;DB;DP=1160;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.54;MQRankSum=-23.253;QD=25.33;ReadPosRankSum=-5.279;SOR=0.611;set=HC	GT:AD:AF:DP	0/1:273,849:0.76:1122
chr20	29628229	.	G	GA	1655.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.274;ClippingRankSum=0.000;DP=2745;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.55;MQRankSum=-4.083;QD=0.62;ReadPosRankSum=2.357;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:2332,356:0.13:2688
chr20	29628271	rs62199576	C	T	42804.77	.	AC=1;AF=0.500;AN=2;DB;DP=2476;set=Intersection	GT:AD:AF:DP	0/1:804,1661:0.67:2465
chr20	29628335	rs11152455	A	T	14807.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=11.185;ClippingRankSum=0.000;DB;DP=1240;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=50.70;MQRankSum=-20.478;QD=12.10;ReadPosRankSum=-1.478;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:786,438:0.36:1224
chr20	29628338	.	A	G	1553.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.764;ClippingRankSum=0.000;DP=1175;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=50.37;MQRankSum=-7.857;QD=1.34;ReadPosRankSum=-1.953;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:1041,122:0.10:1163
chr20	29628341	rs11152456	C	A	22737.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.292;ClippingRankSum=0.000;DB;DP=1104;ExcessHet=3.0103;FS=1.756;MLEAC=1;MLEAF=0.500;MQ=50.09;MQRankSum=-28.650;QD=20.78;ReadPosRankSum=-2.066;SOR=0.853;set=HC	GT:AD:AF:DP	0/1:532,562:0.51:1094
chr20	29628361	rs11152457	A	C	12615.77	.	AC=1;AF=0.500;AN=2;DB;DP=879;set=Intersection	GT:AD:AF:DP	0/1:445,432:0.49:877
chr20	29628431	rs11152458	C	T	10157.77	.	AC=1;AF=0.500;AN=2;DB;DP=607;set=Intersection	GT:AD:AF:DP	0/1:201,404:0.67:605
chr20	29628477	rs62199577	T	A	2915.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:212,118:0.36:330
chr20	29628488	rs11152459	C	T	3196.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:174,129:0.43:303
chr20	29628498	rs62199578	A	C	512.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.594;ClippingRankSum=0.000;DB;DP=245;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.30;MQRankSum=-1.922;QD=2.10;ReadPosRankSum=0.030;SOR=0.496;set=HC	GT:AD:AF:DP	0/1:206,38:0.16:244
chr20	29628519	rs76426821	G	T	550.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.312;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.43;MQRankSum=-0.588;QD=3.04;ReadPosRankSum=0.277;SOR=0.431;set=HC	GT:AD:AF:DP	0/1:146,35:0.19:181
chr20	29630582	rs113392373	A	G	2211.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.722;ClippingRankSum=0.000;DB;DP=420;ExcessHet=3.0103;FS=7.584;MLEAC=1;MLEAF=0.500;MQ=59.60;MQRankSum=-1.141;QD=5.47;ReadPosRankSum=-1.943;SOR=0.324;set=HC	GT:AD:AF:DP	0/1:283,121:0.30:404
chr20	29630695	rs6087171	C	A	4149.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.399;ClippingRankSum=0.000;DB;DP=1555;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.15;MQRankSum=5.283;QD=2.68;ReadPosRankSum=2.595;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:1215,332:0.21:1547
chr20	29630758	rs10084539	C	G	2394.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.357;ClippingRankSum=0.000;DB;DP=1139;ExcessHet=3.0103;FS=5.500;MLEAC=1;MLEAF=0.500;MQ=57.93;MQRankSum=-31.411;QD=2.12;ReadPosRankSum=8.499;SOR=0.844;set=HC	GT:AD:AF:DP	0/1:985,147:0.13:1132
chr20	29630760	rs137900323	T	C	2394.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.138;ClippingRankSum=0.000;DB;DP=1114;ExcessHet=3.0103;FS=6.918;MLEAC=1;MLEAF=0.500;MQ=57.86;MQRankSum=-31.079;QD=2.16;ReadPosRankSum=8.576;SOR=0.789;set=HC	GT:AD:AF:DP	0/1:958,149:0.13:1107
chr20	29632519	rs76216438	GA	G	1139.73	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:61,50:0.45:111
chr20	29632543	rs9647042	T	C	1492.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:154,70:0.31:224
chr20	29632564	rs2379677	G	A	9843.77	.	AC=1;AF=0.500;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	0/1:64,344:0.84:408
chr20	29632593	rs112146379	A	G	2424.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.712;ClippingRankSum=0.000;DB;DP=866;ExcessHet=3.0103;FS=1.420;MLEAC=1;MLEAF=0.500;MQ=52.51;MQRankSum=1.806;QD=2.90;ReadPosRankSum=-0.675;SOR=0.835;set=HC	GT:AD:AF:DP	0/1:657,180:0.22:837
chr20	29632638	rs9647043	C	A	3121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.349;ClippingRankSum=0.000;DB;DP=1366;ExcessHet=3.0103;FS=0.659;MLEAC=1;MLEAF=0.500;MQ=53.64;MQRankSum=4.510;QD=2.30;ReadPosRankSum=-1.042;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:1079,277:0.20:1356
chr20	29632643	rs143379667	T	C	6228.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.879;ClippingRankSum=0.000;DB;DP=1412;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.60;MQRankSum=-1.654;QD=4.45;ReadPosRankSum=1.948;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:1163,237:0.17:1400
chr20	29632662	.	G	T	6766.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.910;ClippingRankSum=0.000;DP=1509;ExcessHet=3.0103;FS=1.399;MLEAC=1;MLEAF=0.500;MQ=53.76;MQRankSum=-6.058;QD=4.63;ReadPosRankSum=3.926;SOR=0.816;set=HC	GT:AD:AF:DP	0/1:1195,266:0.18:1461
chr20	29632674	rs138867112	T	TA	2766.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.118;ClippingRankSum=0.000;DB;DP=1502;ExcessHet=3.0103;FS=0.686;MLEAC=1;MLEAF=0.500;MQ=53.88;MQRankSum=9.616;QD=1.90;ReadPosRankSum=0.824;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:1186,272:0.19:1458
chr20	29632709	rs78816635	C	T	6993.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.893;ClippingRankSum=0.000;DB;DP=1224;ExcessHet=3.0103;FS=1.408;MLEAC=1;MLEAF=0.500;MQ=54.21;MQRankSum=-6.657;QD=5.78;ReadPosRankSum=4.117;SOR=0.845;set=HC	GT:AD:AF:DP	0/1:970,240:0.20:1210
chr20	29632714	rs76788819	CT	AG	6943.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.615;ClippingRankSum=0.000;DB;DP=1158;ExcessHet=3.0103;FS=0.666;JOINED;MLEAC=1;MLEAF=0.500;MQ=54.18;MQRankSum=-7.283;QD=6.05;ReadPosRankSum=3.140;SOR=0.808;set=HC	GT:AD:AF:DP	0/1:913,234:0.20:1147
chr20	29632726	rs138922778	CTATT	C	6343.73	.	AC=1;AF=0.500;AN=2;DB;DP=961;set=Intersection	GT:AD:AF:DP	0/1:749,203:0.21:952
chr20	29632761	rs6057390	T	C	17397.77	.	AC=1;AF=0.500;AN=2;DB;DP=607;set=Intersection	GT:AD:AF:DP	0/1:111,492:0.82:603
chr20	29632772	rs113430333	G	A	1306.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.357;ClippingRankSum=0.000;DB;DP=522;ExcessHet=3.0103;FS=4.969;MLEAC=1;MLEAF=0.500;MQ=53.42;MQRankSum=-3.599;QD=2.51;ReadPosRankSum=0.072;SOR=0.375;set=HC	GT:AD:AF:DP	0/1:415,105:0.20:520
chr20	29633770	rs73621653	T	TAA	634.73	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:28,18:0.39:46
chr20	29633794	rs10084493	C	A	1000.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.293;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=6.208;MLEAC=1;MLEAF=0.500;MQ=54.46;MQRankSum=-6.836;QD=12.83;ReadPosRankSum=-0.744;SOR=1.665;set=HC	GT:AD:AF:DP	0/1:43,35:0.45:78
chr20	29633823	rs77782557	A	G	423.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.178;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=0.725;MLEAC=1;MLEAF=0.500;MQ=56.10;MQRankSum=0.743;QD=2.18;ReadPosRankSum=0.075;SOR=0.561;set=HC	GT:AD:AF:DP	0/1:157,37:0.19:194
chr20	29633847	.	ATGGCAT	AGGCAT,A	841.73	.	AC=1,0;AF=0.500,0.00;ALERT;AN=2;DP=312;set=Intersection	GT:AF:DP	0/1:0.13:310
chr20	29633849	rs374283656	GGC	G	832.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.394;ClippingRankSum=0.000;DB;DP=323;ExcessHet=3.0103;FS=1.363;MLEAC=1;MLEAF=0.500;MQ=54.42;MQRankSum=5.125;QD=2.59;ReadPosRankSum=4.181;SOR=0.851;set=HC	GT:AD:AF:DP	0/1:280,41:0.13:321
chr20	29633853	.	T	TTA	850.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.747;ClippingRankSum=0.000;DP=325;ExcessHet=3.0103;FS=1.362;MLEAC=1;MLEAF=0.500;MQ=54.45;MQRankSum=5.091;QD=2.63;ReadPosRankSum=3.819;SOR=0.855;set=HC	GT:AD:AF:DP	0/1:282,41:0.13:323
chr20	29633854	rs77178122	G	A	853.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.001;ClippingRankSum=0.000;DB;DP=333;ExcessHet=3.0103;FS=1.325;MLEAC=1;MLEAF=0.500;MQ=54.41;MQRankSum=5.275;QD=2.58;ReadPosRankSum=3.530;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:288,43:0.13:331
chr20	29633854	.	G	GATTAA	2192	.	AC=1;AF=0.500;AN=2;BRF=0.48;FR=0.5000;HP=5;HapScore=1;MGOF=51;MMLQ=26;MQ=48.77;NF=50;NR=36;PP=2192;QD=25.8837209302;SC=TATATGGCATGTTTTACATAG;SbPval=0.63;Source=Platypus;TC=223;TCF=125;TCR=98;TR=86;WE=29633869;WS=29633837;set=Platypus	GT:AD:AF:DP	1/0:137,86:0.39:223
chr20	29633887	rs2313264	G	A	394.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.522;ClippingRankSum=0.000;DB;DP=530;ExcessHet=3.0103;FS=3.889;MLEAC=1;MLEAF=0.500;MQ=53.51;MQRankSum=-6.325;QD=0.75;ReadPosRankSum=-2.676;SOR=1.202;set=HC	GT:AD:AF:DP	0/1:452,76:0.14:528
chr20	29633894	rs76245589	C	A	377.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.352;ClippingRankSum=0.000;DB;DP=573;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.69;MQRankSum=-9.313;QD=0.66;ReadPosRankSum=0.912;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:487,83:0.15:570
chr20	29633916	rs2554494	G	T	6975.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.088;ClippingRankSum=0.000;DB;DP=673;ExcessHet=3.0103;FS=3.326;MLEAC=1;MLEAF=0.500;MQ=53.81;MQRankSum=-3.009;QD=10.41;ReadPosRankSum=0.736;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:468,202:0.30:670
chr20	29633927	rs62196372	C	A	6988.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.323;ClippingRankSum=0.000;DB;DP=705;ExcessHet=3.0103;FS=4.602;MLEAC=1;MLEAF=0.500;MQ=53.74;MQRankSum=-2.647;QD=9.96;ReadPosRankSum=-0.369;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:500,202:0.29:702
chr20	29633929	rs7509092	A	G	6948.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.357;ClippingRankSum=0.000;DB;DP=709;ExcessHet=3.0103;FS=5.629;MLEAC=1;MLEAF=0.500;MQ=53.70;MQRankSum=-2.703;QD=9.84;ReadPosRankSum=-0.481;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:506,200:0.28:706
chr20	29633938	rs61041024	A	G	3507.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.631;ClippingRankSum=0.000;DB;DP=707;ExcessHet=3.0103;FS=1.433;MLEAC=1;MLEAF=0.500;MQ=53.59;MQRankSum=-13.829;QD=5.01;ReadPosRankSum=3.029;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:567,133:0.19:700
chr20	29633945	.	G	A	2053.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.138;ClippingRankSum=0.000;DP=712;ExcessHet=3.0103;FS=0.777;MLEAC=1;MLEAF=0.500;MQ=53.67;MQRankSum=-11.996;QD=2.92;ReadPosRankSum=2.652;SOR=0.837;set=HC	GT:AD:AF:DP	0/1:606,98:0.14:704
chr20	29633952	rs62196374	C	T	5463.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.024;ClippingRankSum=0.000;DB;DP=696;ExcessHet=3.0103;FS=3.942;MLEAC=1;MLEAF=0.500;MQ=53.45;MQRankSum=-4.547;QD=7.88;ReadPosRankSum=-1.592;SOR=1.088;set=HC	GT:AD:AF:DP	0/1:527,166:0.24:693
chr20	29633966	rs61684852	GTTT	G,GT	11809.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=650;set=Intersection	GT:AF:DP	1/2:0.20,0.53:638
chr20	29633986	rs2379676	A	C	2906.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.087;ClippingRankSum=0.000;DB;DP=576;ExcessHet=3.0103;FS=2.398;MLEAC=1;MLEAF=0.500;MQ=52.75;MQRankSum=-8.650;QD=5.07;ReadPosRankSum=-0.739;SOR=1.003;set=HC	GT:AD:AF:DP	0/1:468,105:0.18:573
chr20	29634037	rs4006816	G	A	6117.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:173,178:0.51:351
chr20	29634049	rs2379675	G	C	5450.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:129,133:0.51:262
chr20	29634102	rs113531250	TC	T	473.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:29,15:0.34:44
chr20	29634104	rs56780525	C	T	482.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.955;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=2.675;MLEAC=1;MLEAF=0.500;MQ=55.24;MQRankSum=-6.378;QD=10.97;ReadPosRankSum=-3.170;SOR=1.371;set=HC	GT:AD:AF:DP	0/1:29,15:0.34:44
chr20	29652000	rs62206780	T	C	603.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.531;ClippingRankSum=0.000;DB;DP=242;ExcessHet=3.0103;FS=3.890;MLEAC=1;MLEAF=0.500;MQ=58.62;MQRankSum=0.885;QD=2.56;ReadPosRankSum=-1.481;SOR=0.308;set=HC	GT:AD:AF:DP	0/1:194,42:0.18:236
chr20	29652005	.	A	G	397.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.663;ClippingRankSum=0.000;DP=265;ExcessHet=3.0103;FS=4.973;MLEAC=1;MLEAF=0.500;MQ=58.91;MQRankSum=1.174;QD=1.55;ReadPosRankSum=1.514;SOR=1.412;set=HC	GT:AD:AF:DP	0/1:211,45:0.18:256
chr20	29652010	rs78663325	C	T	452.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.911;ClippingRankSum=0.000;DB;DP=295;ExcessHet=3.0103;FS=2.995;MLEAC=1;MLEAF=0.500;MQ=59.08;MQRankSum=1.091;QD=1.59;ReadPosRankSum=1.238;SOR=1.066;set=HC	GT:AD:AF:DP	0/1:234,50:0.18:284
chr20	29652036	rs62206781	C	T	5122.77	.	AC=1;AF=0.500;AN=2;DB;DP=524;set=Intersection	GT:AD:AF:DP	0/1:268,228:0.46:496
chr20	29652065	rs73611950	A	G	5439.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.233;ClippingRankSum=0.000;DB;DP=682;ExcessHet=3.0103;FS=1.402;MLEAC=1;MLEAF=0.500;MQ=59.71;MQRankSum=-5.119;QD=8.18;ReadPosRankSum=0.739;SOR=0.548;set=HC	GT:AD:AF:DP	0/1:500,165:0.25:665
chr20	29652083	rs66615221	C	T	7516.77	.	AC=1;AF=0.500;AN=2;DB;DP=877;set=Intersection	GT:AD:AF:DP	0/1:634,221:0.26:855
chr20	29652099	rs74613177	G	T	8540.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.940;ClippingRankSum=0.000;DB;DP=1066;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.75;MQRankSum=-4.700;QD=8.24;ReadPosRankSum=0.058;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:779,258:0.25:1037
chr20	29652102	.	C	CT	8475.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.928;ClippingRankSum=0.000;DP=1090;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.74;MQRankSum=-4.348;QD=8.00;ReadPosRankSum=-0.026;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:796,264:0.25:1060
chr20	29652105	rs76299428	T	C	12402.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.783;ClippingRankSum=0.000;DB;DP=1146;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.77;MQRankSum=0.430;QD=11.09;ReadPosRankSum=0.158;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:773,345:0.31:1118
chr20	29652107	rs62206782	T	G	12394.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.480;ClippingRankSum=0.000;DB;DP=1173;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.77;MQRankSum=0.568;QD=10.83;ReadPosRankSum=-0.023;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:785,360:0.31:1145
chr20	29652172	rs78862124	T	C	47993.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.121;ClippingRankSum=0.000;DB;DP=1498;ExcessHet=3.0103;FS=0.690;MLEAC=1;MLEAF=0.500;MQ=59.43;MQRankSum=-3.934;QD=32.72;ReadPosRankSum=0.949;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:262,1205:0.82:1467
chr20	29652172	.	TGGAGTGCCTCGGCAGCCTC	CAGAGTGCCTCAGCAGCCTT,CGGAGTGCCTCGGCAGCCTC	2962	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.45;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=74;MMLQ=26;MQ=59.17;NF=123,728;NR=116,718;PP=2924,2962;QD=20;SC=AGGCGACCCATGGAGTGCCTC;SbPval=0.58;Source=Platypus;TC=1617;TCF=811;TCR=806;TR=239,1446;WE=29652204;WS=29652156;set=Platypus	GT:AF:DP	0/1:0.15:1617
chr20	29652173	rs79057885	G	A	13629.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.462;ClippingRankSum=0.000;DB;DP=1499;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.44;MQRankSum=1.152;QD=9.31;ReadPosRankSum=-0.121;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:1050,414:0.28:1464
chr20	29652183	rs71276709	G	A	13238.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.655;ClippingRankSum=0.000;DB;DP=1437;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.38;MQRankSum=0.987;QD=9.43;ReadPosRankSum=1.101;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:1007,397:0.28:1404
chr20	29652191	rs62206784	C	T	42790.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.566;ClippingRankSum=0.000;DB;DP=1347;ExcessHet=3.0103;FS=0.637;MLEAC=1;MLEAF=0.500;MQ=59.29;MQRankSum=-2.716;QD=32.29;ReadPosRankSum=0.452;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:285,1040:0.78:1325
chr20	29652196	rs62206785	T	C	1551.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.008;ClippingRankSum=0.000;DB;DP=1305;ExcessHet=3.0103;FS=0.711;MLEAC=1;MLEAF=0.500;MQ=59.18;MQRankSum=-7.923;QD=1.21;ReadPosRankSum=1.752;SOR=0.824;set=HC	GT:AD:AF:DP	0/1:1072,208:0.16:1280
chr20	29652236	rs62206786	G	C	28357.77	.	AC=1;AF=0.500;AN=2;DB;DP=837;set=Intersection	GT:AD:AF:DP	0/1:148,676:0.82:824
chr20	29652254	rs77357187	G	A	5078.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.826;ClippingRankSum=0.000;DB;DP=587;ExcessHet=3.0103;FS=5.307;MLEAC=1;MLEAF=0.500;MQ=57.26;MQRankSum=-4.517;QD=8.89;ReadPosRankSum=7.170;SOR=1.054;set=HC	GT:AD:AF:DP	0/1:329,242:0.42:571
chr20	29652294	rs148337041	C	A	2723.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.584;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=1.581;MLEAC=1;MLEAF=0.500;MQ=53.49;MQRankSum=-1.590;QD=13.29;ReadPosRankSum=1.539;SOR=0.528;set=HC	GT:AD:AF:DP	0/1:104,101:0.49:205
chr20	29652303	rs62206787	T	C	6441.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:31,154:0.83:185
chr20	29847211	rs6088879	T	C	286.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:15,12:0.44:27
chr20	29965014	rs709045	T	C	336.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:33,16:0.33:49
chr20	29966275	rs2223527	G	A	7054.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr20	29966362	rs2206383	A	C	2066.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr20	29977156	rs2295500	G	A	2023.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:37,83:0.69:120
chr20	29978212	rs73108009	G	C	2231.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.305;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=1.043;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.28;ReadPosRankSum=-1.185;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:109,108:0.50:217
chr20	29978216	rs2206381	T	C	7613.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.26;SOR=0.712;set=HC	GT:AD:AF:DP	1/1:0,210:1.00:210
chr20	30037783	rs2273468	C	T	3645.77	.	AC=1;AF=0.500;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	0/1:237,188:0.44:425
chr20	30038038	rs45520534	T	C	701.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:19,25:0.57:44
chr20	30053255	rs6059440	G	A	1973.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:82,97:0.54:179
chr20	30060720	rs111402081	G	GCA	2802.73	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:210,110:0.34:320
chr20	30064331	rs1006459	A	G	10402.77	.	AC=1;AF=0.500;AN=2;DB;DP=1127;set=Intersection	GT:AD:AF:DP	0/1:593,510:0.46:1103
chr20	30438507	.	A	G	2675.77	.	AC=1;AF=0.500;AN=2;DP=339;set=Intersection	GT:AD:AF:DP	0/1:194,139:0.42:333
chr20	30449181	rs12569	G	A	1816.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:96,91:0.49:187
chr20	30449325	rs947310	C	G	1157.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:46,50:0.52:96
chr20	30449516	rs11417441	G	GC	147.87	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.57;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr20	30452782	rs4911536	C	T	3906.77	.	AC=1;AF=0.500;AN=2;DB;DP=439;set=Intersection	GT:AD:AF:DP	0/1:222,204:0.48:426
chr20	30474843	rs41287080	C	G	2700.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:155,121:0.44:276
chr20	30527065	rs6061043	T	C	5564.77	.	AC=1;AF=0.500;AN=2;DB;DP=636;set=Intersection	GT:AD:AF:DP	0/1:346,281:0.45:627
chr20	30530939	rs6058498	C	T	531.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:30,25:0.45:55
chr20	30602775	rs112249840	C	T	7243.77	.	AC=1;AF=0.500;AN=2;DB;DP=728;set=Intersection	GT:AD:AF:DP	0/1:360,359:0.50:719
chr20	30605976	.	AGGGGGCGGGGGCGGGGGAGGGGC	A	576.73	.	AC=2;AF=1.00;AN=2;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.14;QD=36.05;SOR=5.670;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr20	30606690	.	C	CG	84.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.47;ReadPosRankSum=1.732;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:5,5:0.50:10
chr20	30616835	rs6089151	G	A	5805.77	.	AC=1;AF=0.500;AN=2;DB;DP=525;set=Intersection	GT:AD:AF:DP	0/1:250,271:0.52:521
chr20	30618787	rs6061112	T	C	2695.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:122,128:0.51:250
chr20	30661297	rs2297304	G	A	1699.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:59,80:0.58:139
chr20	30681999	rs6121337	T	C	534.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:27,21:0.44:48
chr20	30734785	.	C	CT	43.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.499;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.75;ReadPosRankSum=-1.562;SOR=1.136;set=HC	GT:AD:AF:DP	0/1:17,8:0.32:25
chr20	30746248	rs6061195	T	C	2314.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:127,120:0.49:247
chr20	30753270	rs14316	T	C	3244.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:137,147:0.52:284
chr20	30959704	rs2424879	A	G	5474.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr20	31019024	rs2295765	C	T	12177.77	.	AC=2;AF=1.00;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	1/1:0,441:1.00:441
chr20	31022959	rs6058694	T	C	7829.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr20	31189411	rs2029086	A	G	2618.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr20	31196471	rs8114375	A	G	10249.77	.	AC=1;AF=0.500;AN=2;DB;DP=1077;set=Intersection	GT:AD:AF:DP	0/1:563,508:0.47:1071
chr20	31238139	rs35103329	G	A	980.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:27,44:0.62:71
chr20	31291161	rs9421	C	T	3168.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr20	31291625	rs28620238	A	G	2048.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:79,87:0.52:166
chr20	31291919	rs35093495	GGGCA	G	1817.73	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:54,49:0.48:103
chr20	31292298	rs59379723	CA	C	963.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=0.911;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.71;ReadPosRankSum=0.438;SOR=0.522;set=HC	GT:AD:AF:DP	0/1:37,88:0.70:125
chr20	31294655	rs28548540	A	G	2139.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr20	31315862	rs2064936	G	A	4422.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.816;ClippingRankSum=0.000;DB;DP=285;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.08;ReadPosRankSum=-2.419;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:160,115:0.42:275
chr20	31315867	rs2064937	C	T	4535.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.399;ClippingRankSum=0.000;DB;DP=295;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.91;ReadPosRankSum=-3.031;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:160,125:0.44:285
chr20	31369136	rs3835238	AC	A	4000.73	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:147,120:0.45:267
chr20	31374259	rs2424913	C	T	5609.77	.	AC=1;AF=0.500;AN=2;DB;DP=532;set=Intersection	GT:AD:AF:DP	0/1:268,254:0.49:522
chr20	31374520	rs2424914	A	G	4977.77	.	AC=1;AF=0.500;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	0/1:198,220:0.53:418
chr20	31374991	rs4911107	G	A	2569.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:106,113:0.52:219
chr20	31376490	rs4911260	T	C	465.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:21,22:0.51:43
chr20	31380309	rs1474738	G	A	828.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:44,36:0.45:80
chr20	31381229	rs993419	G	A	743.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:38,32:0.46:70
chr20	31383353	rs910085	T	G	4207.77	.	AC=1;AF=0.500;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	0/1:169,191:0.53:360
chr20	31383530	rs875041	C	T	1123.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:43,50:0.54:93
chr20	31386347	rs6058891	T	C	4293.77	.	AC=1;AF=0.500;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	0/1:207,197:0.49:404
chr20	31386449	rs2424922	T	C	3025.77	.	AC=1;AF=0.500;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	0/1:195,157:0.45:352
chr20	31387849	rs660291	T	C	199.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:13,10:0.43:23
chr20	31387954	rs1997797	C	G	1229.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:51,61:0.54:112
chr20	31388636	rs2424928	T	C	4156.77	.	AC=1;AF=0.500;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	0/1:167,194:0.54:361
chr20	31389009	rs2065576	C	T	1043.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:65,50:0.43:115
chr20	31414020	rs3092521	CT	C	1059.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.400;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.878;QD=14.93;ReadPosRankSum=0.613;SOR=0.936;set=HC	GT:AD:AF:DP	0/1:11,60:0.85:71
chr20	31427484	rs150424676	TTTTG	T	709.73	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:31,20:0.39:51
chr20	31427635	rs2070090	C	T	2554.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:183,132:0.42:315
chr20	31446645	rs853853	A	G	3359.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr20	31446742	rs3746386	G	C	2287.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:134,106:0.44:240
chr20	31473483	rs6119300	G	C	1688.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:73,77:0.51:150
chr20	31480936	rs62208906	C	T	2954.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:166,139:0.46:305
chr20	31480961	rs2377734	C	T	4028.77	.	AC=1;AF=0.500;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	0/1:196,193:0.50:389
chr20	31486206	rs6058948	A	G	1483.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:38,67:0.64:105
chr20	31494382	rs6120033	G	A	1998.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:124,101:0.45:225
chr20	31495977	rs17370942	C	T	1715.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:88,76:0.46:164
chr20	31505292	rs13037781	C	T	10013.77	.	AC=1;AF=0.500;AN=2;DB;DP=949;set=Intersection	GT:AD:AF:DP	0/1:469,470:0.50:939
chr20	31518229	rs117765537	G	A	969.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:58,46:0.44:104
chr20	31577394	rs6058991	G	A	5521.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr20	31577572	rs6088057	C	T	4762.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr20	31577582	rs141745544	CAG	C	6338.73	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr20	31583384	rs2070310	A	G	10330.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	1/1:0,385:1.00:385
chr20	31583966	rs2070311	T	G	841.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr20	31584178	rs6141862	G	A	4640.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr20	31585351	rs452299	C	G	2583.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr20	31585415	rs190097	T	C	6167.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr20	31585545	rs440139	C	T	7210.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr20	31587752	rs414191	G	C	6100.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr20	31587793	rs15850	A	G	7276.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr20	31607551	rs61734341	G	C	4554.77	.	AC=1;AF=0.500;AN=2;DB;DP=518;set=Intersection	GT:AD:AF:DP	0/1:283,226:0.44:509
chr20	31619357	rs4911286	C	T	340.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:16,14:0.47:30
chr20	31619500	rs17301126	C	T	4238.77	.	AC=1;AF=0.500;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	0/1:191,204:0.52:395
chr20	31619578	rs6059027	A	G	11457.77	.	AC=2;AF=1.00;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	1/1:0,431:1.00:431
chr20	31619724	rs2070312	A	T	430.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:36,22:0.38:58
chr20	31621354	rs74645632	T	A	2626.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:110,117:0.52:227
chr20	31621564	rs2070315	C	T	1320.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:63,60:0.49:123
chr20	31621583	rs2070316	G	A	2707.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr20	31622083	rs2070317	G	A	5879.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr20	31622120	rs73256621	G	T	2168.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:64,94:0.59:158
chr20	31622768	rs6059032	C	A	8262.77	.	AC=1;AF=0.500;AN=2;DB;DP=864;set=Intersection	GT:AD:AF:DP	0/1:454,404:0.47:858
chr20	31622839	rs6059033	T	C	9705.77	.	AC=1;AF=0.500;AN=2;DB;DP=1045;set=Intersection	GT:AD:AF:DP	0/1:547,486:0.47:1033
chr20	31623649	rs17301231	C	T	1195.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:45,48:0.52:93
chr20	31624300	rs17373408	C	T	7928.77	.	AC=1;AF=0.500;AN=2;DB;DP=935;set=Intersection	GT:AD:AF:DP	0/1:525,401:0.43:926
chr20	31624368	rs6059035	C	T	7303.77	.	AC=1;AF=0.500;AN=2;DB;DP=590;set=Intersection	GT:AD:AF:DP	0/1:238,343:0.59:581
chr20	31626558	rs6088078	G	C	695.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:30,29:0.49:59
chr20	31626621	rs6057708	C	T	2496.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:104,105:0.50:209
chr20	31627291	rs4911287	A	G	1704.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:79,81:0.51:160
chr20	31629911	rs2070319	G	A	3412.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:156,149:0.49:305
chr20	31630724	rs439255	G	A	937.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:54,43:0.44:97
chr20	31630971	rs411001	C	T	1357.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:76,68:0.47:144
chr20	31643511	rs384430	A	G	1129.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:1,38:0.97:39
chr20	31644520	rs408538	T	C	3484.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr20	31647126	rs6088082	C	T	260.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:21,14:0.40:35
chr20	31647864	rs6088084	C	A	4595.77	.	AC=1;AF=0.500;AN=2;DB;DP=510;set=Intersection	GT:AD:AF:DP	0/1:274,229:0.46:503
chr20	31647935	rs2424936	G	T	5693.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr20	31649781	rs398444	T	C	2103.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:88,101:0.53:189
chr20	31651583	rs403461	A	G	802.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr20	31652292	rs4911290	G	A	4695.77	.	AC=1;AF=0.500;AN=2;DB;DP=515;set=Intersection	GT:AD:AF:DP	0/1:267,244:0.48:511
chr20	31652596	rs2093066	C	T	3201.77	.	AC=1;AF=0.500;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	0/1:170,157:0.48:327
chr20	31656632	rs6057717	C	G	7877.77	.	AC=1;AF=0.500;AN=2;DB;DP=741;set=Intersection	GT:AD:AF:DP	0/1:363,365:0.50:728
chr20	31656837	rs2424938	G	A	5238.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr20	31660543	rs378098	C	T	3333.77	.	AC=1;AF=0.500;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	0/1:194,167:0.46:361
chr20	31669467	rs221983	T	A	2820.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:174,140:0.45:314
chr20	31669517	rs221984	C	T	1913.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:138,104:0.43:242
chr20	31669544	rs221985	G	A	1459.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:99,66:0.40:165
chr20	31671619	rs2424943	G	T	2387.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.094;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=3.105;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.95;ReadPosRankSum=-0.270;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:69,64:0.48:133
chr20	31671628	rs2424944	C	T	2447.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.435;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=3.117;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.40;ReadPosRankSum=-0.910;SOR=0.465;set=HC	GT:AD:AF:DP	0/1:67,66:0.50:133
chr20	31671663	rs2424945	T	C	1371.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:71,70:0.50:141
chr20	31672882	rs73264111	C	A	1964.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:82,91:0.53:173
chr20	31673846	rs2070325	A	G	1880.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:151,102:0.40:253
chr20	31673983	rs41305787	C	T	3328.77	.	AC=1;AF=0.500;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	0/1:174,158:0.48:332
chr20	31674061	rs41311298	C	T	1932.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:62,83:0.57:145
chr20	31676622	rs2424949	G	T	4232.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr20	31676804	rs2889732	A	C	7516.77	.	AC=1;AF=0.500;AN=2;DB;DP=798;set=Intersection	GT:AD:AF:DP	0/1:426,368:0.46:794
chr20	31677474	rs7271727	A	G	1256.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.357;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=5.633;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.23;ReadPosRankSum=-0.298;SOR=0.176;set=HC	GT:AD:AF:DP	0/1:45,50:0.53:95
chr20	31677474	.	AGT	GGC	705	.	AC=1;AF=0.500;AN=2;BRF=0.22;FR=0.5000;HP=1;HapScore=2;MGOF=9;MMLQ=24;MQ=60.0;NF=2;NR=33;PP=705;QD=21.6705107103;SC=AGGCCCTTGAAGTGAGGAGTG;SbPval=0.51;Source=Platypus;TC=81;TCF=4;TCR=77;TR=35;WE=31677484;WS=31677464;set=Platypus	GT:AD:AF:DP	0/1:46,35:0.43:81
chr20	31677476	rs6057722	T	C	3329.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:1,89:0.99:90
chr20	31680234	rs2070327	C	T	1529.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:72,67:0.48:139
chr20	31682778	rs2024934	C	A	807.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:24,37:0.61:61
chr20	31688241	rs11699009	T	C	3107.77	.	AC=1;AF=0.500;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	0/1:194,158:0.45:352
chr20	31688260	rs11696307	C	T	2944.77	.	AC=1;AF=0.500;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	0/1:190,157:0.45:347
chr20	31688330	rs11696310	C	T	1957.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:118,98:0.45:216
chr20	31767237	rs11407628	G	GA	121.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.216;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.480;QD=1.93;ReadPosRankSum=-0.277;SOR=0.466;set=HC	GT:AD:AF:DP	0/1:47,16:0.25:63
chr20	31811551	rs725914	C	T	4157.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr20	31812923	rs3818222	G	A	8450.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr20	31814348	rs1570033	G	A	10410.77	.	AC=2;AF=1.00;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	1/1:0,369:1.00:369
chr20	31825436	rs58831055	A	AG	4535.73	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr20	31826027	rs6059183	T	C	6796.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:2,263:0.99:265
chr20	31826088	rs36225274	GGCAGTGACCCTGAA	G	3558.73	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr20	31826130	rs6141898	G	T	1882.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.53;QD=29.89;SOR=3.442;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr20	31827439	rs6141899	A	G	1581.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr20	31828254	rs6059186	T	C	6511.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr20	31828265	rs6059187	A	G	6129.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr20	31828336	.	A	AGATG	542.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.850;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=33.92;ReadPosRankSum=-0.875;SOR=1.127;set=HC	GT:AD:AF:DP	0/1:2,14:0.88:16
chr20	31886782	rs35028429	C	CT	322.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.308;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.48;ReadPosRankSum=0.345;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:93,37:0.28:130
chr20	31954819	rs368904466	TA	T	334.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.711;ClippingRankSum=0.000;DB;DP=252;ExcessHet=3.0103;FS=5.122;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=2.088;QD=1.62;ReadPosRankSum=-0.484;SOR=1.099;set=HC	GT:AD:AF:DP	0/1:152,54:0.26:206
chr20	32077925	rs75667555	C	T	1198.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.81;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr20	32211760	.	GA	G	114.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.566;ClippingRankSum=0.000;DP=83;ExcessHet=3.0103;FS=2.837;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.591;QD=1.98;ReadPosRankSum=0.342;SOR=0.298;set=HC	GT:AD:AF:DP	0/1:41,17:0.29:58
chr20	32212690	rs3803939	C	T	7901.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr20	32228115	rs144832090	G	A	2086.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:115,99:0.46:214
chr20	32228315	rs75180889	A	G	2018.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:75,87:0.54:162
chr20	32245546	rs13037669	T	C	650.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr20	32245869	rs3746461	C	G	1386.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr20	32248163	rs3746460	C	T	8402.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:4,316:0.99:320
chr20	32255233	rs3746459	T	C	754.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr20	32266134	rs35385772	C	T	859.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:52,41:0.44:93
chr20	32295541	rs910397	C	T	5049.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr20	32298286	rs13042148	C	T	72.28	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.09;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr20	32298323	rs2626529	C	T	688.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr20	32302586	rs147507008	G	A	5122.77	.	AC=1;AF=0.500;AN=2;DB;DP=535;set=Intersection	GT:AD:AF:DP	0/1:277,255:0.48:532
chr20	32333181	rs7274811	G	T	6100.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr20	32368929	rs2889785	T	C	4490.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr20	32376884	rs55886617	C	CT	79.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.612;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=1.596;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.63;ReadPosRankSum=3.799;SOR=1.136;set=HC	GT:AD:AF:DP	0/1:36,13:0.27:49
chr20	32378732	rs2747565	G	A	1960.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.434;ClippingRankSum=0.000;DB;DP=488;ExcessHet=3.0103;FS=0.603;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.08;ReadPosRankSum=-0.747;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:354,126:0.26:480
chr20	32379263	rs2626551	T	C	6414.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:2,246:0.99:248
chr20	32664864	rs10649600	C	CCAG	17793.73	.	AC=2;AF=1.00;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	1/1:10,391:0.98:401
chr20	32891200	rs819146	G	T	12732.77	.	AC=2;AF=1.00;AN=2;DB;DP=460;set=Intersection	GT:AD:AF:DP	1/1:0,450:1.00:450
chr20	33037336	rs3736762	C	T	1784.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr20	33050107	rs73103130	G	A	1041.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:37,46:0.55:83
chr20	33053985	rs11480899	A	AT	571.75	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:2,26:0.93:28
chr20	33057954	rs6059856	G	C	14561.77	.	AC=2;AF=1.00;AN=2;DB;DP=540;set=Intersection	GT:AD:AF:DP	1/1:0,532:1.00:532
chr20	33057974	rs10716089	CT	C	13993.73	.	AC=2;AF=1.00;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	1/1:0,400:1.00:400
chr20	33059478	.	GGTGTGTGTGT	G,GGT	2228.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=140;set=Intersection	GT:AF:DP	1/2:0.30,0.70:57
chr20	33068563	rs6059861	A	T	1456.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr20	33104592	rs2424993	G	C	13279.77	.	AC=2;AF=1.00;AN=2;DB;DP=494;set=Intersection	GT:AD:AF:DP	1/1:2,484:1.00:486
chr20	33114201	rs8116198	A	G	1966.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:121,98:0.45:219
chr20	33114290	rs10684716	C	CTT	189	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.997;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=17.18;ReadPosRankSum=1.109;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:1,10:0.91:11
chr20	33147737	rs6059915	C	G	4403.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr20	33148861	rs6059916	T	G	4331.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr20	33150503	rs6059918	C	T	2165.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:1,72:0.99:73
chr20	33297810	rs369052205	G	GCC	306.75	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr20	33297811	rs2378257	A	C	315.78	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr20	33326876	rs6060025	A	G	2724.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr20	33334540	rs910872	T	C	3109.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr20	33334734	rs11484299	T	TA	216.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.002;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=1.406;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=0.000;QD=5.56;ReadPosRankSum=-1.021;SOR=0.585;set=HC	GT:AD:AF:DP	0/1:18,21:0.54:39
chr20	33337751	rs3787220	T	C	12156.77	.	AC=2;AF=1.00;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	1/1:0,449:1.00:449
chr20	33342439	rs1884432	T	C	1395.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr20	33342477	rs6087625	G	A	2259.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr20	33346556	rs11468960	ATC	A	3472.73	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr20	33346832	rs11476500	GT	G	211.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:5,16:0.76:21
chr20	33356511	rs2295353	C	T	1636.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr20	33364584	rs6060043	C	T	3770.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr20	33364655	rs6120723	C	T	2947.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr20	33470694	rs4911163	C	T	9310.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:0,350:1.00:350
chr20	33496667	.	GA	G	159.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.538;ClippingRankSum=0.000;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.552;QD=1.88;ReadPosRankSum=-1.077;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:58,27:0.32:85
chr20	33500245	rs3787214	C	A	630.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr20	33500378	rs2378294	G	A	1865.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr20	33507379	.	AGTGTGT	A,AGT	707.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.29;QD=39.32;SOR=1.863;set=HC	GT:AD:AF:DP	1/2:0,8,10:0.44,0.56:18
chr20	33509275	rs3818273	G	A	8176.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr20	33509523	rs2273683	C	T	3270.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr20	33533736	rs734111	A	C	4781.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr20	33572941	rs2425007	A	G	9830.77	.	AC=2;AF=1.00;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	1/1:0,355:1.00:355
chr20	33572979	rs3746448	C	T	6039.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr20	33574022	rs2425008	G	C	4266.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr20	33574765	rs3746446	T	C	26378.77	.	AC=2;AF=1.00;AN=2;DB;DP=1006;set=Intersection	GT:AD:AF:DP	1/1:0,996:1.00:996
chr20	33575347	rs3053708	C	CAT	8759.73	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr20	33578251	rs3746444	A	G	7021.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr20	33578899	rs2425009	T	C	7767.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:2,272:0.99:274
chr20	33581889	rs7268266	T	C	8594.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:2,309:0.99:311
chr20	33583033	rs10536288	CAAA	C	547.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr20	33583037	rs61501849	C	G	556.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr20	33583114	rs2425014	T	C	1198.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr20	33583331	rs2425015	A	G	10118.77	.	AC=2;AF=1.00;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	1/1:0,367:1.00:367
chr20	33584822	rs11167250	T	TG	673.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr20	33584864	rs11167251	C	CT	1374.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr20	33586193	rs3746436	C	T	14706.77	.	AC=2;AF=1.00;AN=2;DB;DP=545;set=Intersection	GT:AD:AF:DP	1/1:3,536:0.99:539
chr20	33587082	.	C	T	3941.77	.	AC=1;AF=0.500;AN=2;DP=376;set=Intersection	GT:AD:AF:DP	0/1:180,184:0.51:364
chr20	33587198	rs3746435	G	C	5365.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr20	33587562	.	CCCA	C	156.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.436;ClippingRankSum=0.000;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.37;ReadPosRankSum=-1.360;SOR=0.792;set=HC	GT:AD:AF:DP	0/1:93,21:0.18:114
chr20	33587563	rs200141778	CCA	C	766.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.679;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=1.630;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.97;ReadPosRankSum=-0.985;SOR=0.382;set=HC	GT:AD:AF:DP	0/1:65,45:0.41:110
chr20	33587564	rs201431658	CA	C	325.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.901;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=7.175;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.93;ReadPosRankSum=3.108;SOR=2.224;set=HC	GT:AD:AF:DP	0/1:84,27:0.24:111
chr20	33588698	rs67885143	TGAGGCTGGGCAAGGGCTGTGGG	T	6108.73	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr20	33589107	rs36003887	G	A	9110.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:2,333:0.99:335
chr20	33590096	rs4911167	A	G	3429.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:2,123:0.98:125
chr20	33591197	rs11481073	A	AG	10138.73	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr20	33592248	rs752448	C	T	7766.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr20	33592474	rs752449	A	G	2203.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr20	33593457	rs3746431	T	C	9459.77	.	AC=2;AF=1.00;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	1/1:2,351:0.99:353
chr20	33593674	rs3746430	T	C	2142.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr20	33594226	rs6060151	G	T	6997.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr20	33595300	rs2273636	C	T	3762.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr20	33600740	rs1885117	C	T	2449.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr20	33632600	rs3803938	C	T	594.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr20	33637606	rs2281626	T	G	11820.77	.	AC=2;AF=1.00;AN=2;DB;DP=451;set=Intersection	GT:AD:AF:DP	1/1:0,436:1.00:436
chr20	33642732	rs4911462	G	T	5597.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.678;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=42.73;ReadPosRankSum=-0.567;SOR=0.876;set=HC	GT:AD:AF:DP	1/1:2,129:0.98:131
chr20	33642737	rs4911463	G	A	5597.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.827;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=42.73;ReadPosRankSum=-0.339;SOR=0.806;set=HC	GT:AD:AF:DP	1/1:2,129:0.98:131
chr20	33657126	rs1998233	G	A	4882.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:2,185:0.99:187
chr20	33703607	rs3746429	C	T	18349.77	.	AC=2;AF=1.00;AN=2;DB;DP=703;set=Intersection	GT:AD:AF:DP	1/1:0,694:1.00:694
chr20	33706187	rs6088722	T	C	1121.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr20	33711624	rs6120838	T	A	1276.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr20	33713963	rs2295885	T	C	1022.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr20	33713975	rs2295886	A	C	1186.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr20	33714187	rs2295887	G	A	2873.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr20	33730387	rs6120849	C	T	2675.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr20	33734905	rs945959	G	C	9803.77	.	AC=2;AF=1.00;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	1/1:0,371:1.00:371
chr20	33762489	rs2069948	C	T	13567.77	.	AC=2;AF=1.00;AN=2;DB;DP=503;set=Intersection	GT:AD:AF:DP	1/1:0,493:1.00:493
chr20	33763951	rs2069952	C	T	8376.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr20	33764632	rs9574	C	G	3526.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr20	33834708	rs3764733	G	A	9040.77	.	AC=2;AF=1.00;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	1/1:2,351:0.99:353
chr20	33859675	rs11696548	C	T	3025.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr20	33867697	rs619865	A	G	5626.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr20	33894463	rs878639	A	G	4767.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr20	33896757	rs8117705	G	C	1704.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr20	33972451	.	TA	T	121.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.139;ClippingRankSum=0.000;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.65;ReadPosRankSum=1.187;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:51,23:0.31:74
chr20	34022387	rs224331	A	C	8734.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr20	34025756	rs143384	A	G	2085.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr20	34054609	rs224354	G	C	216.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:13,9:0.41:22
chr20	34054729	rs2296402	T	C	1890.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:70,87:0.55:157
chr20	34055453	rs5841213	AG	A	490.73	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:21,20:0.49:41
chr20	34057799	rs41290918	A	G	3518.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:158,175:0.53:333
chr20	34061578	rs224361	T	C	927.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:40,41:0.51:81
chr20	34062642	rs224362	C	T	1176.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:84,58:0.41:142
chr20	34062710	rs224363	C	T	1164.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:99,61:0.38:160
chr20	34079200	rs224373	A	G	1793.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:63,83:0.57:146
chr20	34096725	rs2236165	A	G	1060.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:35,42:0.55:77
chr20	34099165	rs72173955	CT	C	622.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.986;ClippingRankSum=0.000;DB;DP=327;ExcessHet=3.0103;FS=1.752;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.515;QD=2.07;ReadPosRankSum=-0.156;SOR=0.847;set=HC	GT:AD:AF:DP	0/1:210,91:0.30:301
chr20	34116282	rs7261862	T	C	3913.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:136,175:0.56:311
chr20	34131396	rs12481365	C	T	5157.77	.	AC=1;AF=0.500;AN=2;DB;DP=543;set=Intersection	GT:AD:AF:DP	0/1:285,248:0.47:533
chr20	34136791	rs45563939	C	T	1973.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:112,93:0.45:205
chr20	34142257	rs60267524	C	T	310.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:24,14:0.37:38
chr20	34142287	rs17092784	G	A	201.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:12,9:0.43:21
chr20	34142670	rs73283830	T	G	457.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:24,22:0.48:46
chr20	34144107	rs224420	T	C	6912.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr20	34147998	rs224424	A	G	6258.77	.	AC=1;AF=0.500;AN=2;DB;DP=734;set=Intersection	GT:AD:AF:DP	0/1:408,317:0.44:725
chr20	34148488	rs8115363	G	A	1209.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:61,55:0.47:116
chr20	34152782	rs2277862	C	T	849.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:37,40:0.52:77
chr20	34153341	rs224430	C	T	535.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:8,20:0.71:28
chr20	34164422	rs1557202	T	C	12384.77	.	AC=2;AF=1.00;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	1/1:0,453:1.00:453
chr20	34167382	rs8116470	G	A	3025.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:150,133:0.47:283
chr20	34170035	rs6060486	C	G	14842.77	.	AC=2;AF=1.00;AN=2;DB;DP=567;set=Intersection	GT:AD:AF:DP	1/1:0,557:1.00:557
chr20	34170174	rs6119628	C	A	3921.77	.	AC=1;AF=0.500;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	0/1:184,189:0.51:373
chr20	34170316	rs6060487	C	A	2043.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr20	34171324	rs6088887	G	A	775.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:38,31:0.45:69
chr20	34171646	.	C	A	3430.77	.	AC=1;AF=0.500;AN=2;DP=432;set=Intersection	GT:AD:AF:DP	0/1:252,175:0.41:427
chr20	34173046	rs1536147	C	T	9378.77	.	AC=1;AF=0.500;AN=2;DB;DP=951;set=Intersection	GT:AD:AF:DP	0/1:483,461:0.49:944
chr20	34173178	rs6060488	A	G	4725.77	.	AC=1;AF=0.500;AN=2;DB;DP=521;set=Intersection	GT:AD:AF:DP	0/1:275,235:0.46:510
chr20	34205035	rs11698601	G	A	3132.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:125,156:0.56:281
chr20	34205389	rs3841688	G	GC	653.73	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:26,26:0.50:52
chr20	34207062	rs149341858	CCCCGACT	C	7612.73	.	AC=1;AF=0.500;AN=2;DB;DP=469;set=Intersection	GT:AD:AF:DP	0/1:221,200:0.48:421
chr20	34207836	.	T	C	964.77	.	AC=1;AF=0.500;AN=2;DP=71;set=Intersection	GT:AD:AF:DP	0/1:34,37:0.52:71
chr20	34208516	rs2425067	C	T	83.03	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.76;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr20	34208548	.	G	GCC	583	.	AC=1;AF=0.500;AN=2;BRF=0.43;FR=0.5000;HP=12;HapScore=3;MGOF=14;MMLQ=24;MQ=58.16;NF=3;NR=17;PP=583;QD=30.0;SC=TCTTCTCCCCGCCCCCCCCGC;SbPval=0.92;Source=Platypus;TC=40;TCF=11;TCR=29;TR=20;WE=34208556;WS=34208538;set=Platypus	GT:AD:AF:DP	1/0:20,20:0.50:40
chr20	34214368	rs6060516	T	C	2173.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:93,93:0.50:186
chr20	34215109	.	C	CAAAAAAAAA	93.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.585;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.70;ReadPosRankSum=0.000;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:11,3:0.21:14
chr20	34215234	rs147019139	C	CA	2571.73	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:105,112:0.52:217
chr20	34218673	rs12481228	G	C	4031.77	.	AC=1;AF=0.500;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	0/1:183,191:0.51:374
chr20	34219496	rs6579255	T	C	6020.77	.	AC=1;AF=0.500;AN=2;DB;DP=565;set=Intersection	GT:AD:AF:DP	0/1:273,287:0.51:560
chr20	34219987	rs61191623	A	C	21231.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.839;ClippingRankSum=0.000;DB;DP=1193;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.93;ReadPosRankSum=-0.606;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:643,541:0.46:1184
chr20	34219990	rs78084033	A	C	21544.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.322;ClippingRankSum=0.000;DB;DP=1208;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.98;ReadPosRankSum=-1.054;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:646,552:0.46:1198
chr20	34219994	rs10211771	T	C	19735.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.533;ClippingRankSum=0.000;DB;DP=1226;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.24;ReadPosRankSum=-1.727;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:648,567:0.47:1215
chr20	34243017	rs6121015	C	T	8167.77	.	AC=1;AF=0.500;AN=2;DB;DP=837;set=Intersection	GT:AD:AF:DP	0/1:443,380:0.46:823
chr20	34247060	rs11478538	CA	C	1159.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.668;ClippingRankSum=0.000;DB;DP=225;ExcessHet=3.0103;FS=3.210;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=0.898;QD=6.99;ReadPosRankSum=0.788;SOR=1.002;set=HC	GT:AD:AF:DP	0/1:57,109:0.66:166
chr20	34268874	rs3056722	T	TCCA	1296.73	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:45,35:0.44:80
chr20	34280321	.	TAA	T	59.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.450;ClippingRankSum=-0.000;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.47;ReadPosRankSum=-0.405;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chr20	34286251	rs56116518	G	T	611.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:32,29:0.48:61
chr20	34304783	rs2425090	C	A	650.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:42,33:0.44:75
chr20	34307950	rs59064961	T	C	450.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:13,22:0.63:35
chr20	34312658	rs11696947	A	G	4367.77	.	AC=1;AF=0.500;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	0/1:177,204:0.54:381
chr20	34312713	rs11699044	C	T	2309.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:74,104:0.58:178
chr20	34320202	rs11479445	TA	T	262.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.652;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.11;ReadPosRankSum=2.277;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:5,21:0.81:26
chr20	34324456	rs2425120	A	T	1186.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:84,63:0.43:147
chr20	34324484	rs6058312	A	C	1213.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:84,66:0.44:150
chr20	34327159	rs1056196	T	A	455.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:31,20:0.39:51
chr20	34328274	rs1538426	G	A	2715.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr20	34328848	rs2425122	C	T	1514.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:53,69:0.57:122
chr20	34328952	.	CTTTT	C	223.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DP=18;ExcessHet=3.0103;FS=4.260;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=27.97;ReadPosRankSum=0.319;SOR=1.447;set=HC	GT:AD:AF:DP	0/1:1,7:0.88:8
chr20	34435246	rs143955363	C	CT	424.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.241;ClippingRankSum=0.000;DB;DP=310;ExcessHet=3.0103;FS=0.567;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=2.993;QD=1.46;ReadPosRankSum=0.073;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:229,61:0.21:290
chr20	34443027	.	G	T	891.77	.	AC=1;AF=0.500;AN=2;DP=107;set=Intersection	GT:AD:AF:DP	0/1:63,42:0.40:105
chr20	34443173	rs2425171	G	C	5650.77	.	AC=1;AF=0.500;AN=2;DB;DP=653;set=Intersection	GT:AD:AF:DP	0/1:365,282:0.44:647
chr20	34446395	rs2425178	A	G	709.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:44,34:0.44:78
chr20	34451393	rs73095524	G	T	1070.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:41,46:0.53:87
chr20	34457513	rs6121073	G	A	7512.77	.	AC=1;AF=0.500;AN=2;DB;DP=685;set=Intersection	GT:AD:AF:DP	0/1:313,366:0.54:679
chr20	34459814	rs11308881	TA	T	88.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.887;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.55;ReadPosRankSum=1.092;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:14,11:0.44:25
chr20	34501087	.	C	T	256.77	.	AC=1;AF=0.500;AN=2;DP=15;set=Intersection	GT:AD:AF:DP	0/1:4,11:0.73:15
chr20	34502107	rs17431878	G	A	4602.77	.	AC=1;AF=0.500;AN=2;DB;DP=478;set=Intersection	GT:AD:AF:DP	0/1:246,228:0.48:474
chr20	34535373	rs6088971	T	C	1974.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:102,96:0.48:198
chr20	34542365	rs35448195	C	G	5618.77	.	AC=1;AF=0.500;AN=2;DB;DP=533;set=Intersection	GT:AD:AF:DP	0/1:266,261:0.50:527
chr20	34766421	.	AG	A	1597.73	.	AC=1;AF=0.500;AN=2;DP=82;set=Intersection	GT:AD:AF:DP	0/1:33,49:0.60:82
chr20	35064912	rs1275393	G	A	2225.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr20	35068018	rs1275396	A	G	2118.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr20	35090820	rs1275391	C	G	9989.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	1/1:1,378:1.00:379
chr20	35127613	.	C	CT	206.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.682;ClippingRankSum=0.000;DP=384;ExcessHet=3.0103;FS=1.165;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=2.156;QD=0.59;ReadPosRankSum=0.005;SOR=0.731;set=HC	GT:AD:AF:DP	0/1:293,60:0.17:353
chr20	35128763	rs144219994	A	G	15376.77	.	AC=1;AF=0.500;AN=2;DB;DP=1637;set=Intersection	GT:AD:AF:DP	0/1:885,731:0.45:1616
chr20	35436758	.	G	GA	149.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.101;ClippingRankSum=0.000;DP=72;ExcessHet=3.0103;FS=1.299;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=0.000;QD=2.23;ReadPosRankSum=0.566;SOR=0.928;set=HC	GT:AD:AF:DP	0/1:47,20:0.30:67
chr20	35445890	.	T	TA	236.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.571;ClippingRankSum=0.000;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.82;ReadPosRankSum=0.735;SOR=0.618;set=HC	GT:AD:AF:DP	0/1:96,34:0.26:130
chr20	35467713	rs1146250	G	A	4845.77	.	AC=1;AF=0.500;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	0/1:207,227:0.52:434
chr20	35491033	rs1291099	A	G	1781.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:70,85:0.55:155
chr20	35491551	rs6029806	A	G	2342.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr20	35507542	rs3748459	G	A	6159.77	.	AC=1;AF=0.500;AN=2;DB;DP=613;set=Intersection	GT:AD:AF:DP	0/1:299,298:0.50:597
chr20	35507621	rs3748461	G	A	2497.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:99,112:0.53:211
chr20	35508959	rs1291125	T	C	2821.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:71,117:0.62:188
chr20	35555717	rs10610136	CTT	C	168.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.049;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=3.584;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=0.000;QD=2.72;ReadPosRankSum=-0.077;SOR=0.209;set=HC	GT:AD:AF:DP	0/1:47,15:0.24:62
chr20	35559352	rs6072746	A	C	7531.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:1,292:1.00:293
chr20	35695535	rs371434822	GA	G	281.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.568;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=1.762;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=2.997;QD=2.25;ReadPosRankSum=0.635;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:84,41:0.33:125
chr20	35717354	rs141401264	G	A	1999.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:100,89:0.47:189
chr20	35738841	rs1744759	G	C	6984.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr20	35740794	rs1744760	T	C	13433.77	.	AC=2;AF=1.00;AN=2;DB;DP=528;set=Intersection	GT:AD:AF:DP	1/1:2,518:1.00:520
chr20	35748024	rs1780670	G	A	1452.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.56;QD=28.49;SOR=3.788;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr20	35748039	.	G	GAAAGAAAAGAAAAGAAAAGA	4142.73	.	AC=2;AF=1.00;AN=2;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.55;QD=69.05;SOR=3.651;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr20	35748894	rs1624888	C	G	11944.77	.	AC=2;AF=1.00;AN=2;DB;DP=444;set=Intersection	GT:AD:AF:DP	1/1:0,435:1.00:435
chr20	35769592	rs1744769	T	C	11529.77	.	AC=2;AF=1.00;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	1/1:0,444:1.00:444
chr20	35769647	rs1780680	G	T	9050.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:1,339:1.00:340
chr20	35783494	rs1615246	T	C	8474.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chr20	35786188	rs1780687	A	C	5002.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr20	35787473	rs1744775	A	G	6730.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:2,249:0.99:251
chr20	35788405	.	CAAA	C	147.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.093;ClippingRankSum=0.000;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.36;ReadPosRankSum=2.207;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:3,10:0.77:13
chr20	35807790	rs11467214	G	GCTTATAGACAGGGCCCCGCGGCCGGCACT	4796.73	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr20	35826683	rs2076399	T	G	2289.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr20	35827028	rs146714866	A	ATT	839.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr20	35827682	rs2076398	G	T	1376.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr20	35828696	rs6032013	A	G	1686.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr20	35828757	.	ATT	A	2035.73	.	AC=2;AF=1.00;AN=2;DP=106;set=Intersection	GT:AD:AF:DP	1/1:14,85:0.86:99
chr20	35835657	rs11698281	C	T	4872.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr20	35835889	rs1079657	A	G	10509.77	.	AC=2;AF=1.00;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	1/1:0,389:1.00:389
chr20	35838372	rs2272950	T	A	2426.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr20	35838591	rs2050091	T	C	6874.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr20	35838756	rs3817885	G	A	932.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr20	35852395	rs2076397	A	C	6397.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr20	35852450	rs2076396	G	C	2637.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr20	35865054	rs4608	C	T	13325.77	.	AC=2;AF=1.00;AN=2;DB;DP=502;set=Intersection	GT:AD:AF:DP	1/1:0,498:1.00:498
chr20	35869619	rs2050093	C	T	4378.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr20	36030939	rs1885257	G	C	7173.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr20	36031097	rs2145792	A	G	10416.77	.	AC=2;AF=1.00;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	1/1:0,368:1.00:368
chr20	36150591	rs34619095	A	AT	803.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.270;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.14;ReadPosRankSum=-1.828;SOR=0.798;set=HC	GT:AD:AF:DP	0/1:20,22:0.52:42
chr20	36150594	rs2344098	T	A	726.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.152;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.15;ReadPosRankSum=0.330;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:22,23:0.51:45
chr20	36150600	rs5841264	T	TA	2025.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.61;QD=40.51;SOR=3.745;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr20	36375071	rs2297154	T	C	5946.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr20	36488508	rs3833308	TCTCA	T	6003.73	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr20	36488911	rs1474623	G	T	406.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr20	36500313	rs717599	C	A	6457.77	.	AC=1;AF=0.500;AN=2;DB;DP=641;set=Intersection	GT:AD:AF:DP	0/1:320,317:0.50:637
chr20	36531978	rs6021782	G	T	1408.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:72,61:0.46:133
chr20	36572310	rs11482907	A	AC	431.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.656;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=2.280;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=0.000;QD=4.80;ReadPosRankSum=-1.961;SOR=0.197;set=HC	GT:AD:AF:DP	0/1:61,29:0.32:90
chr20	36628853	rs150432768	A	ACGGCCAGCGCAGGCTTCCCTCCCGCGTGGG	2053.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.871;ClippingRankSum=0.000;DB;DP=375;ExcessHet=3.0103;FS=4.147;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=3.362;QD=13.51;ReadPosRankSum=0.717;SOR=1.095;set=HC	GT:AD:AF:DP	0/1:98,54:0.36:152
chr20	36640870	rs36059660	C	T	2926.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:123,137:0.53:260
chr20	36685915	rs2256288	T	C	2208.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:131,110:0.46:241
chr20	36758778	rs2076377	G	C	1898.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:88,95:0.52:183
chr20	36759751	rs111895659	A	AC	1074.73	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:61,48:0.44:109
chr20	36761014	rs2076386	G	A	4562.77	.	AC=1;AF=0.500;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	0/1:187,208:0.53:395
chr20	36761202	rs1555074	G	A	6733.77	.	AC=1;AF=0.500;AN=2;DB;DP=644;set=Intersection	GT:AD:AF:DP	0/1:321,317:0.50:638
chr20	36769792	rs2076389	G	A	4444.77	.	AC=1;AF=0.500;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	0/1:203,198:0.49:401
chr20	36769839	rs12624511	G	A	2877.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:134,135:0.50:269
chr20	36770588	rs2076390	C	T	8347.77	.	AC=1;AF=0.500;AN=2;DB;DP=755;set=Intersection	GT:AD:AF:DP	0/1:354,394:0.53:748
chr20	36793501	rs2067027	A	G	4453.77	.	AC=1;AF=0.500;AN=2;DB;DP=480;set=Intersection	GT:AD:AF:DP	0/1:264,215:0.45:479
chr20	36793529	rs2076380	G	A	5738.77	.	AC=1;AF=0.500;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	0/1:195,260:0.57:455
chr20	36841756	rs1534967	T	C	4483.77	.	AC=1;AF=0.500;AN=2;DB;DP=476;set=Intersection	GT:AD:AF:DP	0/1:249,223:0.47:472
chr20	36841914	rs3746471	G	A	5380.77	.	AC=1;AF=0.500;AN=2;DB;DP=480;set=Intersection	GT:AD:AF:DP	0/1:223,244:0.52:467
chr20	36845738	rs760998	C	T	2449.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:105,119:0.53:224
chr20	36855784	.	TTG	T	2836.73	.	AC=1;AF=0.500;AN=2;DP=153;MQ=60.07;set=Intersection	GT:AD:AF:DP	0/1:57,81:0.59:138
chr20	36940169	rs3746476	A	G	564.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:23,25:0.52:48
chr20	36946157	rs6127733	G	A	1809.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:118,89:0.43:207
chr20	36946848	rs4358188	G	A	2983.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:168,150:0.47:318
chr20	36946885	rs150340828	G	T	2610.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:97,119:0.55:216
chr20	36952342	rs5741804	C	T	2052.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:113,104:0.48:217
chr20	36953097	rs5741806	C	T	2576.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:116,123:0.51:239
chr20	36959318	rs5743533	G	A	2893.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr20	36959353	rs5743534	A	G	5610.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr20	36959566	rs2425357	A	G	5593.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr20	36959732	rs6127771	C	T	554.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr20	36965617	rs1131847	A	G	5531.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr20	37055875	rs707578	T	C	842.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:40,33:0.45:73
chr20	37062583	rs788347	T	C	5191.77	.	AC=1;AF=0.500;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	0/1:209,237:0.53:446
chr20	37182812	rs202236409	T	TA	133.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.715;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=10.494;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=1.292;QD=3.18;ReadPosRankSum=0.188;SOR=0.061;set=HC	GT:AD:AF:DP	0/1:27,15:0.36:42
chr20	37191391	.	G	GT	100.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.191;ClippingRankSum=0.000;DP=166;ExcessHet=3.0103;FS=4.613;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.78;ReadPosRankSum=0.224;SOR=0.333;set=HC	GT:AD:AF:DP	0/1:104,25:0.19:129
chr20	37230486	rs6070740	C	A	260.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:10,12:0.55:22
chr20	37230809	.	G	A	695.77	.	AC=1;AF=0.500;AN=2;DP=91;set=Intersection	GT:AD:AF:DP	0/1:53,37:0.41:90
chr20	37252018	rs6100437	G	A	2490.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:144,118:0.45:262
chr20	37252210	rs6064778	C	A	6131.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.607;ClippingRankSum=0.000;DB;DP=244;ExcessHet=3.0103;FS=2.739;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.44;ReadPosRankSum=-1.000;SOR=0.272;set=HC	GT:AD:AF:DP	1/1:2,239:0.99:241
chr20	37255995	rs148944768	A	ATGTGTGTTGGTG	2221.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.809;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=2.655;MLEAC=1;MLEAF=0.500;MQ=62.95;MQRankSum=6.514;QD=20.57;ReadPosRankSum=4.971;SOR=1.036;set=HC	GT:AD:AF:DP	0/1:50,58:0.54:108
chr20	37257384	rs35399405	A	G	218.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:15,10:0.40:25
chr20	37257590	rs6070809	C	G	1743.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:94,84:0.47:178
chr20	37266205	rs6026964	C	A	1121.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:45,46:0.51:91
chr20	37272209	rs62201576	C	T	552.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:25,23:0.48:48
chr20	37272589	rs419162	G	A	973.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:56,42:0.43:98
chr20	37274559	rs11426603	C	CA	2812.73	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:120,111:0.48:231
chr20	37274861	rs117796	A	G	2234.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:86,92:0.52:178
chr20	37277153	rs220527	G	T	3208.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr20	37277269	rs6092810	C	T	3454.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.686;ClippingRankSum=0.000;DB;DP=301;ExcessHet=3.0103;FS=1.963;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.79;ReadPosRankSum=-0.643;SOR=0.830;set=HC	GT:AD:AF:DP	0/1:129,164:0.56:293
chr20	37277271	rs220526	C	T	11128.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.13;SOR=0.875;set=HC	GT:AD:AF:DP	1/1:0,308:1.00:308
chr20	37278558	rs6027039	C	T	7224.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr20	37278569	rs6027040	A	C	6765.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr20	37278612	rs220522	T	A	3381.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr20	37278823	rs220521	T	C	2347.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr20	37278946	rs220520	T	C	10182.77	.	AC=2;AF=1.00;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	1/1:0,371:1.00:371
chr20	37279255	rs220519	C	T	5133.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:2,191:0.99:193
chr20	37279376	rs67738971	TGACGA	T	11181.73	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr20	37279458	rs6015551	C	T	2476.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr20	37383482	rs35702444	T	G	1111.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.900;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=5.849;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.23;ReadPosRankSum=1.067;SOR=1.925;set=HC	GT:AD:AF:DP	0/1:32,29:0.48:61
chr20	37383484	rs35956429	G	A	1099.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.415;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=5.849;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.03;ReadPosRankSum=1.042;SOR=1.925;set=HC	GT:AD:AF:DP	0/1:32,29:0.48:61
chr20	37383487	.	TC	CT	1074.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.980;ClippingRankSum=0.000;DP=67;ExcessHet=3.0103;FS=3.472;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.28;ReadPosRankSum=1.958;SOR=1.643;set=HC	GT:AD:AF:DP	0/1:37,29:0.44:66
chr20	37394032	rs10485651	C	T	1204.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:68,58:0.46:126
chr20	37394795	rs3215704	AT	A	521.73	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:9,17:0.65:26
chr20	37395016	.	G	T	1590.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.245;ClippingRankSum=0.000;DP=195;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.20;ReadPosRankSum=0.477;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:112,82:0.42:194
chr20	37395979	.	AT	A	84.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.215;ClippingRankSum=0.000;DP=61;ExcessHet=3.0103;FS=7.419;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.51;ReadPosRankSum=0.098;SOR=0.054;set=HC	GT:AD:AF:DP	0/1:39,17:0.30:56
chr20	37396120	rs2245231	A	G	4486.77	.	AC=1;AF=0.500;AN=2;DB;DP=473;set=Intersection	GT:AD:AF:DP	0/1:235,229:0.49:464
chr20	37400490	rs6128952	G	A	533.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:43,27:0.39:70
chr20	37400506	rs73104029	C	T	685.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.157;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=1.380;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.70;ReadPosRankSum=1.395;SOR=0.443;set=HC	GT:AD:AF:DP	0/1:35,19:0.35:54
chr20	37400516	rs62202475	G	T	700.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.962;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=4.215;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.91;ReadPosRankSum=-0.618;SOR=0.143;set=HC	GT:AD:AF:DP	0/1:27,20:0.43:47
chr20	37518374	rs45531438	C	T	2461.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:71,104:0.59:175
chr20	37524424	rs140138596	T	TCCTCCCTTCCTCCCTTCCTTCTTTCTTC	2451.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.102;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=1.438;MLEAC=1;MLEAF=0.500;MQ=64.05;MQRankSum=10.220;QD=18.43;ReadPosRankSum=1.469;SOR=0.471;set=HC	GT:AD:AF:DP	0/1:67,66:0.50:133
chr20	39609426	rs4812473	C	T	4107.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr20	39788855	rs2076148	A	G	1028.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:36,43:0.54:79
chr20	39794489	rs6124323	G	A	2994.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:188,148:0.44:336
chr20	39797465	rs753381	T	C	3340.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:146,157:0.52:303
chr20	39802814	rs33917926	G	T	6189.77	.	AC=1;AF=0.500;AN=2;DB;DP=563;set=Intersection	GT:AD:AF:DP	0/1:262,285:0.52:547
chr20	39830122	rs2235367	A	G	404.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:16,18:0.53:34
chr20	39974316	rs6129820	A	G	911.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:61,46:0.43:107
chr20	39978564	rs6029646	G	T	1853.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:72,80:0.53:152
chr20	39978998	rs61730990	G	C	2377.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:107,107:0.50:214
chr20	40049099	rs6029672	G	A	630.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:36,27:0.43:63
chr20	40052372	rs34110734	TC	T	1623.73	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:59,65:0.52:124
chr20	40079787	rs73123238	G	C	3383.77	.	AC=1;AF=0.500;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	0/1:176,165:0.48:341
chr20	40111900	rs2143228	G	A	843.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:45,40:0.47:85
chr20	40116207	rs3092194	G	A	1336.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:47,55:0.54:102
chr20	40120211	rs4810321	C	T	799.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:23,36:0.61:59
chr20	40714479	rs2016647	G	A	4391.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.371;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.53;ReadPosRankSum=0.787;SOR=0.228;set=HC	GT:AD:AF:DP	1/1:1,171:0.99:172
chr20	40714524	rs722898	C	G	4394.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:1,137:0.99:138
chr20	40714539	rs1569547	C	T	1024.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.318;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.76;ReadPosRankSum=-1.536;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:53,52:0.50:105
chr20	40733082	rs2076247	C	T	2466.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:1,86:0.99:87
chr20	40743829	rs2076248	A	G	5321.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr20	40863182	rs6030076	C	A	692.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:41,30:0.42:71
chr20	40863305	rs6072666	G	A	2526.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:121,125:0.51:246
chr20	40979160	rs2071854	T	C	2664.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr20	40979430	rs929071	C	T	1760.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:81,80:0.50:161
chr20	41100774	rs760704	G	A	1200.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:53,46:0.46:99
chr20	41101274	rs6065487	C	A	471.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:25,19:0.43:44
chr20	41306488	rs3091760	G	GAA	1820.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.479;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.29;ReadPosRankSum=1.063;SOR=1.107;set=HC	GT:AD:AF:DP	1/1:4,68:0.94:72
chr20	41400229	rs6030462	G	A	1069.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:70,53:0.43:123
chr20	41514690	.	C	CATAT	1069.73	.	AC=1;AF=0.500;AN=2;DP=130;set=Intersection	GT:AD:AF:DP	0/1:43,42:0.49:85
chr20	41818162	rs117637352	G	A	302.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.29;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr20	41818289	rs2867655	C	G	635.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr20	42089511	rs2235611	T	C	7468.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr20	42157237	rs2071972	C	T	3896.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr20	42199704	.	GGTGTGT	G,GGT	2948.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=89;set=Intersection	GT:AF:DP	1/2:0.27,0.73:73
chr20	42199925	rs3127060	G	A	1208.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr20	42205061	rs763227	G	A	3842.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr20	42208522	rs2301483	T	G	2554.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr20	42225114	rs2664519	G	A	7219.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr20	42242700	rs4473450	C	T	4087.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr20	42249398	rs1555348	C	T	1570.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr20	42249479	rs11483104	C	CT	3419.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.266;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.16;MQRankSum=0.545;QD=17.10;ReadPosRankSum=1.123;SOR=0.689;set=HC	GT:AD:AF:DP	1/1:22,178:0.89:200
chr20	42264502	rs6031007	G	A	8232.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:3,307:0.99:310
chr20	42264726	rs2273523	T	C	2574.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr20	42265700	rs6065638	T	C	804.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr20	42265966	rs6031008	G	A	1460.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr20	42275499	rs393115	G	T	5419.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr20	42302201	rs826949	C	T	1826.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr20	42302371	rs826950	C	T	12984.77	.	AC=2;AF=1.00;AN=2;DB;DP=485;set=Intersection	GT:AD:AF:DP	1/1:0,481:1.00:481
chr20	42310509	rs442143	T	C	2859.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr20	42328639	rs285162	T	C	5447.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr20	42328749	rs285163	A	G	778.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr20	42574442	rs4812769	T	C	1205.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.957;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=1.736;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.82;ReadPosRankSum=0.963;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:47,55:0.54:102
chr20	42745033	rs116986535	G	A	1708.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:84,82:0.49:166
chr20	42745115	rs6073336	T	G	971.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:35,44:0.56:79
chr20	42747247	rs3810510	C	T	2256.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:111,111:0.50:222
chr20	42806429	rs2064381	A	T	3159.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr20	42814931	rs6031442	T	C	5577.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.786;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=29.36;ReadPosRankSum=-1.587;SOR=0.662;set=HC	GT:AD:AF:DP	1/1:1,189:0.99:190
chr20	42815190	rs1883790	G	A	20725.77	.	AC=2;AF=1.00;AN=2;DB;DP=786;set=Intersection	GT:AD:AF:DP	1/1:0,777:1.00:777
chr20	42825929	rs8268	C	T	3423.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:166,166:0.50:332
chr20	42826350	rs9346	A	C	1222.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:87,60:0.41:147
chr20	42826379	rs11274	C	T	919.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:67,43:0.39:110
chr20	42835757	rs2232286	A	G	583.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:27,24:0.47:51
chr20	42939750	rs6073401	T	C	24909.77	.	AC=2;AF=1.00;AN=2;DB;DP=924;set=Intersection	GT:AD:AF:DP	1/1:0,916:1.00:916
chr20	43034660	rs736824	T	C	307.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:6,12:0.67:18
chr20	43052570	rs2273618	T	C	465.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:23,20:0.47:43
chr20	43058018	rs3746574	T	C	567.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:27,23:0.46:50
chr20	43058096	rs3746575	C	G	2514.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:114,113:0.50:227
chr20	43090929	rs11482024	T	TA	322.73	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:23,22:0.49:45
chr20	43254490	rs244074	A	G	850.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr20	43264927	rs394105	C	T	3127.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr20	43343895	rs376618937	TGTGTGTGAGC	T	341.73	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:3,13:0.81:16
chr20	43343908	rs1980803	G	A	1040.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr20	43343930	rs1980804	T	G	1497.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr20	43348735	rs2296530	C	A	4643.77	.	AC=1;AF=0.500;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	0/1:207,223:0.52:430
chr20	43530234	rs4931	A	C	3819.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:174,179:0.51:353
chr20	43534903	rs16989481	G	A	1491.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:46,61:0.57:107
chr20	43534934	rs2425675	G	A	788.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:53,39:0.42:92
chr20	43535162	rs372424925	AAAAAAAG	A	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.807;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=6.429;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.24;ReadPosRankSum=0.129;SOR=1.236;set=HC	GT:AD:AF:DP	0/1:19,9:0.32:28
chr20	43538733	rs2072727	T	C	4591.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr20	43547537	rs2072728	A	G	908.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:57,46:0.45:103
chr20	43547677	rs2075960	T	G	3997.77	.	AC=1;AF=0.500;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	0/1:214,200:0.48:414
chr20	43550045	rs2425686	A	T	210.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:19,10:0.34:29
chr20	43559043	rs3746580	G	T	1954.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:83,85:0.51:168
chr20	43565622	rs3746584	G	A	2739.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:131,127:0.49:258
chr20	43565804	rs6094057	G	A	235.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:21,11:0.34:32
chr20	43566787	rs11780	A	G	3614.77	.	AC=1;AF=0.500;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	0/1:207,180:0.47:387
chr20	43600673	rs6130717	C	G	508.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:25,23:0.48:48
chr20	43623658	rs6017460	C	T	740.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.381;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=4.294;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.12;ReadPosRankSum=2.066;SOR=0.291;set=HC	GT:AD:AF:DP	0/1:18,31:0.63:49
chr20	43629135	rs17420378	G	A	2576.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:132,126:0.49:258
chr20	43681951	rs2284275	C	T	1045.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:60,46:0.43:106
chr20	43723627	rs734784	T	C	6309.77	.	AC=1;AF=0.500;AN=2;DB;DP=620;set=Intersection	GT:AD:AF:DP	0/1:301,308:0.51:609
chr20	43727155	rs13043825	C	T	1438.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:60,69:0.53:129
chr20	43727367	rs34643859	T	C	1040.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:65,54:0.45:119
chr20	43727443	rs35456522	G	C	466.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:26,22:0.46:48
chr20	43728070	rs6073643	T	C	1358.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:55,60:0.52:115
chr20	43743532	rs11700134	G	A	1773.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.781;ClippingRankSum=0.000;DB;DP=533;ExcessHet=3.0103;FS=2.133;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.93;ReadPosRankSum=5.305;SOR=0.854;set=HC	GT:AD:AF:DP	0/1:338,113:0.25:451
chr20	43743532	.	GCG	ACA	2944	.	AC=1;AF=0.500;AN=2;BRF=0.49;FR=0.5000;HP=2;HapScore=3;MGOF=7;MMLQ=25;MQ=59.92;NF=92;NR=38;PP=2944;QD=20;SC=ACACACACACGCGCACACACA;SbPval=0.72;Source=Platypus;TC=387;TCF=259;TCR=128;TR=130;WE=43743542;WS=43743508;set=Platypus	GT:AD:AF:DP	1/0:257,130:0.34:387
chr20	43743534	rs11700135	G	A	4607.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.915;ClippingRankSum=0.000;DB;DP=544;ExcessHet=3.0103;FS=1.231;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.13;ReadPosRankSum=5.035;SOR=0.795;set=HC	GT:AD:AF:DP	0/1:306,149:0.33:455
chr20	43752737	rs34841068	G	C	1481.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:139,81:0.37:220
chr20	43803725	rs1983649	T	A	2294.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr20	43922674	rs202220465	G	C	4186.77	.	AC=1;AF=0.500;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	0/1:205,205:0.50:410
chr20	43926536	rs2227274	G	T	2585.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:127,131:0.51:258
chr20	43926573	rs2227275	C	T	3530.77	.	AC=1;AF=0.500;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	0/1:170,167:0.50:337
chr20	43929659	rs2076023	G	A	4597.77	.	AC=1;AF=0.500;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	0/1:231,221:0.49:452
chr20	43940112	rs2743327	C	G	1867.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:75,85:0.53:160
chr20	43964407	rs2072791	G	C	1932.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr20	43964707	rs3830725	C	CT	778.73	.	AC=1;AF=0.500;AN=2;DB;DP=68;MQ=60.32;set=Intersection	GT:AD:AF:DP	0/1:38,28:0.42:66
chr20	43976807	rs2078423	C	T	906.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:32,34:0.52:66
chr20	43976869	rs5841587	C	CT	3341.73	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:105,99:0.49:204
chr20	43976875	rs5841588	GC	G	2805.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.712;ClippingRankSum=0.000;DB;DP=257;ExcessHet=3.0103;FS=5.135;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.388;QD=11.59;ReadPosRankSum=-0.395;SOR=0.590;set=HC	GT:AD:AF:DP	0/1:118,124:0.51:242
chr20	43976991	rs2228384	A	G	10447.77	.	AC=1;AF=0.500;AN=2;DB;DP=1070;set=Intersection	GT:AD:AF:DP	0/1:569,498:0.47:1067
chr20	43977066	rs17173360	GC	G	7049.73	.	AC=1;AF=0.500;AN=2;DB;DP=496;set=Intersection	GT:AD:AF:DP	0/1:213,249:0.54:462
chr20	43995410	rs6032142	C	T	1817.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr20	44002665	rs2231626	C	G	4774.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr20	44004155	rs10546815	CATT	C	6637.73	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:1,152:0.99:153
chr20	44006078	rs2231614	C	G	3434.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr20	44038574	rs1127497	A	G	12625.77	.	AC=2;AF=1.00;AN=2;DB;DP=486;set=Intersection	GT:AD:AF:DP	1/1:2,475:1.00:477
chr20	44048065	rs3092108	C	CG	15925.73	.	AC=2;AF=1.00;AN=2;DB;DP=676;set=Intersection	GT:AD:AF:DP	1/1:5,597:0.99:602
chr20	44049916	rs3092450	T	TC	2211.73	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr20	44052992	rs13217	G	A	22106.77	.	AC=2;AF=1.00;AN=2;DB;DP=829;set=Intersection	GT:AD:AF:DP	1/1:2,821:1.00:823
chr20	44053069	rs2741566	T	C	27911.77	.	AC=2;AF=1.00;AN=2;DB;DP=1011;set=Intersection	GT:AD:AF:DP	1/1:0,1002:1.00:1002
chr20	44054349	rs707577	T	C	21970.77	.	AC=2;AF=1.00;AN=2;DB;DP=838;set=Intersection	GT:AD:AF:DP	1/1:0,829:1.00:829
chr20	44141201	rs11470736	TCACACA	T,TCACA	2474.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.422;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.25;MQRankSum=0.301;QD=32.56;ReadPosRankSum=0.446;SOR=0.693;set=HC	GT:AD:AF:DP	1/2:2,38,36:0.50,0.47:76
chr20	44141331	rs6032259	A	G	3178.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:154,152:0.50:306
chr20	44144118	rs8125061	C	T	1990.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:93,118:0.56:211
chr20	44163988	rs6032274	T	C	3224.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr20	44170712	rs11594	C	A	2850.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr20	44174423	rs765156	G	A	11967.77	.	AC=2;AF=1.00;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	1/1:0,433:1.00:433
chr20	44180813	rs17348421	G	A	3339.77	.	AC=1;AF=0.500;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	0/1:194,153:0.44:347
chr20	44180868	rs17433181	A	G	1822.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:98,81:0.45:179
chr20	44181723	rs2294559	A	G	419.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:23,17:0.42:40
chr20	44181980	rs3817886	C	A	3163.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:166,164:0.50:330
chr20	44182081	rs6032299	A	G	740.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:45,33:0.42:78
chr20	44184285	rs6032305	G	A	63.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:9,4:0.31:13
chr20	44184375	rs2250860	T	C	762.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:39,36:0.48:75
chr20	44190705	rs3817887	T	G	3750.77	.	AC=1;AF=0.500;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	0/1:229,187:0.45:416
chr20	44190996	rs2272956	A	G	261.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:8,11:0.58:19
chr20	44208011	rs7273669	C	T	2888.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:118,123:0.51:241
chr20	44259549	rs2272961	G	A	6476.77	.	AC=1;AF=0.500;AN=2;DB;DP=596;set=Intersection	GT:AD:AF:DP	0/1:283,309:0.52:592
chr20	44279034	rs6065851	C	T	871.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:32,34:0.52:66
chr20	44313401	rs2072974	G	A	3176.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:125,140:0.53:265
chr20	44314609	rs232729	A	G	2011.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:110,96:0.47:206
chr20	44331043	rs6032445	C	T	266.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:10,11:0.52:21
chr20	44333326	.	C	CT	59.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.157;ClippingRankSum=0.000;DP=90;ExcessHet=3.0103;FS=1.502;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.01;ReadPosRankSum=-1.449;SOR=0.404;set=HC	GT:AD:AF:DP	0/1:44,15:0.25:59
chr20	44378577	rs380421	T	C	11799.77	.	AC=2;AF=1.00;AN=2;DB;DP=466;set=Intersection	GT:AD:AF:DP	1/1:0,456:1.00:456
chr20	44417643	rs6032537	A	G	9443.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:0,340:1.00:340
chr20	44417675	rs6032538	G	C	6180.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr20	44418471	rs411945	G	C	2836.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr20	44418564	rs3746493	A	G	4748.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr20	44420637	rs2664539	G	A	2575.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr20	44420682	rs2664591	T	C	2067.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr20	44422373	rs6032544	T	C	751.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr20	44422705	rs6032545	G	T	1633.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr20	44423843	rs6104350	C	A	2089.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr20	44425026	.	CAA	C,CA	1784.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.769;ClippingRankSum=0.000;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.14;MQRankSum=0.624;QD=12.22;ReadPosRankSum=2.003;SOR=0.781;set=HC	GT:AD:AF:DP	1/2:22,32,92:0.22,0.63:146
chr20	44429633	rs11458259	C	CA	264.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.596;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=0.758;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=2.572;QD=1.42;ReadPosRankSum=0.065;SOR=0.558;set=HC	GT:AD:AF:DP	0/1:146,40:0.22:186
chr20	44451901	rs8860	T	C	5410.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr20	44452697	rs4629	C	A	12058.77	.	AC=2;AF=1.00;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	1/1:1,445:1.00:446
chr20	44453335	rs144529565	A	AC	3754.73	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:43,161:0.79:204
chr20	44456059	rs373018	T	C	3564.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr20	44468931	rs197669	T	C	2066.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr20	44468982	rs11418101	A	AC	4862.73	.	AC=2;AF=1.00;AN=2;DB;DP=125;MQ=60.09;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr20	44469290	rs4638862	G	A	22739.77	.	AC=2;AF=1.00;AN=2;DB;DP=876;set=Intersection	GT:AD:AF:DP	1/1:0,864:1.00:864
chr20	44470648	.	C	CT	412.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.540;ClippingRankSum=0.000;DP=347;ExcessHet=3.0103;FS=2.158;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.000;QD=1.54;ReadPosRankSum=-1.102;SOR=0.515;set=HC	GT:AD:AF:DP	0/1:207,61:0.23:268
chr20	44470676	rs3848713	T	C	5354.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr20	44472163	rs55931834	C	T	4270.77	.	AC=1;AF=0.500;AN=2;DB;DP=476;set=Intersection	GT:AD:AF:DP	0/1:256,210:0.45:466
chr20	44472286	rs150578949	G	A	4530.77	.	AC=1;AF=0.500;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	0/1:210,228:0.52:438
chr20	44501458	rs6130959	A	G	5231.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr20	44505973	rs2903808	T	C	11379.77	.	AC=2;AF=1.00;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	1/1:0,402:1.00:402
chr20	44506418	rs1045493	G	A	10190.77	.	AC=2;AF=1.00;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	1/1:0,350:1.00:350
chr20	44511627	rs11086984	C	T	3893.77	.	AC=1;AF=0.500;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	0/1:215,179:0.45:394
chr20	44515059	rs6094224	T	C	1851.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr20	44516444	rs7268221	A	G	4235.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr20	44517360	rs1516580	T	C	1683.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr20	44518843	rs3817731	A	T	7735.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr20	44519643	rs2868362	G	A	3177.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr20	44520237	rs3080212	CCTGCTG	CCTG,C	15212.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=423;set=Intersection	GT:AF:DP	1/1:0.99:350
chr20	44522005	rs742034	A	G	8614.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;MQ=60.03;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr20	44522125	rs10633828	C	CT	264.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.805;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=11.010;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=0.742;QD=7.79;ReadPosRankSum=0.800;SOR=3.442;set=HC	GT:AD:AF:DP	0/1:12,22:0.65:34
chr20	44522594	rs4810476	A	G	6381.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr20	44523248	rs2075962	T	C	8944.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:0,327:1.00:327
chr20	44523442	rs3215446	TC	T	19358.73	.	AC=2;AF=1.00;AN=2;DB;DP=638;set=Intersection	GT:AD:AF:DP	1/1:0,603:1.00:603
chr20	44523547	rs2075961	G	A	13947.77	.	AC=2;AF=1.00;AN=2;DB;DP=518;set=Intersection	GT:AD:AF:DP	1/1:0,507:1.00:507
chr20	44523782	rs4608591	C	T	13399.77	.	AC=2;AF=1.00;AN=2;DB;DP=517;set=Intersection	GT:AD:AF:DP	1/1:0,494:1.00:494
chr20	44525464	rs11468785	GC	G	2052.73	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:3,75:0.96:78
chr20	44526783	rs7270170	G	A	2124.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:112,99:0.47:211
chr20	44530838	rs553359	G	T	1166.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr20	44538427	rs378114	T	C	4285.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr20	44538484	rs435306	G	T	3309.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr20	44540178	rs394643	A	G	7940.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr20	44574533	rs11696196	C	T	8250.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr20	44574658	rs62213347	C	T	4105.77	.	AC=1;AF=0.500;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	0/1:207,194:0.48:401
chr20	44578776	rs6065910	A	G	3958.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr20	44582435	rs41280276	G	T	5396.77	.	AC=1;AF=0.500;AN=2;DB;DP=470;set=Intersection	GT:AD:AF:DP	0/1:221,243:0.52:464
chr20	44586036	rs3746506	G	A	988.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr20	44586688	.	ACTTTT	A	145.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.802;ClippingRankSum=0.000;DP=87;ExcessHet=3.0103;FS=4.130;MLEAC=1;MLEAF=0.500;MQ=60.99;MQRankSum=1.597;QD=2.11;ReadPosRankSum=-1.151;SOR=1.358;set=HC	GT:AD:AF:DP	0/1:49,20:0.29:69
chr20	44587801	rs56295229	G	A	1860.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:120,93:0.44:213
chr20	44588109	rs3746507	G	A	5498.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr20	44596207	rs6032606	C	G	10823.77	.	AC=2;AF=1.00;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	1/1:0,388:1.00:388
chr20	44596545	rs3848719	G	A	11053.77	.	AC=2;AF=1.00;AN=2;DB;DP=448;set=Intersection	GT:AD:AF:DP	1/1:1,437:1.00:438
chr20	44599839	rs6017715	G	C	5230.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr20	44601040	.	AG	A	608.73	.	AC=1;AF=0.500;AN=2;DP=36;set=Intersection	GT:AD:AF:DP	0/1:12,20:0.62:32
chr20	44639511	rs3918253	C	T	14307.77	.	AC=2;AF=1.00;AN=2;DB;DP=530;set=Intersection	GT:AD:AF:DP	1/1:1,520:1.00:521
chr20	44640959	rs3918256	G	A	12949.77	.	AC=2;AF=1.00;AN=2;DB;DP=499;set=Intersection	GT:AD:AF:DP	1/1:0,492:1.00:492
chr20	44642406	rs2250889	G	C	4329.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr20	44642833	rs13969	A	C	1273.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr20	44645010	rs20544	C	T	7768.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr20	44663475	rs11699481	T	C	845.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:27,31:0.53:58
chr20	44673546	rs2297197	C	G	3523.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:129,167:0.56:296
chr20	44674743	rs2297199	A	C	3351.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:135,136:0.50:271
chr20	44675136	rs3848727	T	C	2847.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr20	44678348	rs6032635	G	A	7091.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr20	44680412	rs3746522	C	T	4308.77	.	AC=1;AF=0.500;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	0/1:194,199:0.51:393
chr20	44681510	rs55947855	G	A	1451.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:102,71:0.41:173
chr20	44693897	rs17450969	G	A	2213.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:107,104:0.49:211
chr20	44746982	rs1883832	T	C	3100.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:146,150:0.51:296
chr20	44747086	rs745307	G	A	4246.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.541;ClippingRankSum=0.000;DB;DP=361;ExcessHet=3.0103;FS=2.855;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.00;ReadPosRankSum=0.949;SOR=0.552;set=HC	GT:AD:AF:DP	0/1:166,188:0.53:354
chr20	44756943	.	CT	C	282.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.262;ClippingRankSum=0.000;DP=138;ExcessHet=3.0103;FS=4.344;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.059;QD=3.53;ReadPosRankSum=-0.462;SOR=0.278;set=HC	GT:AD:AF:DP	0/1:41,39:0.49:80
chr20	44839322	rs2425785	G	C	565.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:27,26:0.49:53
chr20	44979641	rs4810503	TA	GC	2464.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr20	44983517	rs12480667	G	A	1986.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:161,102:0.39:263
chr20	44985307	rs911435	T	G	4952.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr20	44987318	rs1044369	C	G	5894.77	.	AC=1;AF=0.500;AN=2;DB;DP=575;set=Intersection	GT:AD:AF:DP	0/1:288,277:0.49:565
chr20	44996182	rs2257495	A	G	7768.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr20	44996265	rs41310002	C	A	1748.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:69,83:0.55:152
chr20	44998791	rs2261964	C	T	4187.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr20	45003326	rs2261213	A	G	3036.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr20	45003788	rs2257545	T	C	1209.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr20	45131759	rs6017883	C	T	378.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:41,20:0.33:61
chr20	45173856	rs6017908	G	C	4150.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr20	45188971	rs910062	C	A	2210.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr20	45192249	.	A	AAGAGAGAG,AAGAGAG	998	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.39;FR=0.5000,0.5000;HP=1;HapScore=1;MGOF=18;MMLQ=22;MQ=59.83;NF=7,7;NR=30,30;PP=998,301;QD=27.9189189189;SC=CGACCACAGCAAGAGGGAGAG;SbPval=0.23;Source=Platypus;TC=53;TCF=7;TCR=46;TR=37,37;WE=45192262;WS=45192238;set=Platypus	GT:AF:DP	0/1:0.70:53
chr20	45192253	rs59207395	G	GA	1394.73	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=0.529;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=2.036;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.91;ReadPosRankSum=0.589;SOR=1.358;set=HC	GT:AD:AF:DP	1/1:4,52:0.93:56
chr20	45192254	.	G	A	1537	.	AC=2;AF=1.00;AN=2;BRF=0.39;FR=1.0000;HP=2;HapScore=1;MGOF=18;MMLQ=25;MQ=59.65;NF=26;NR=43;PP=1537;QD=22.7792929355;SC=ACAGCAAGAGGGAGAGAGAGA;SbPval=0.49;Source=Platypus;TC=81;TCF=30;TCR=51;TR=69;WE=45192262;WS=45192238;set=Platypus	GT:AD:AF:DP	1/1:12,69:0.85:81
chr20	45192254	rs35374760	G	GAGAGA,GAGAGAGA	3131.73	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;BaseQRankSum=-1.420;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=4.065;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=54.94;ReadPosRankSum=0.952;SOR=1.033;set=HC	GT:AD:AF:DP	1/2:1,21,35:0.37,0.61:57
chr20	45192271	.	G	GAGAGAGAC	1352	.	AC=1;AF=0.500;AN=2;BRF=0.4;FR=0.5000;HP=1;HapScore=1;MGOF=54;MMLQ=29;MQ=59.45;NF=7;NR=30;PP=1352;QD=36.7837837838;SC=GAGAGAGAGAGGCAGTTGGAA;SbPval=0.34;Source=Platypus;TC=53;TCF=8;TCR=45;TR=37;WE=45192279;WS=45192261;set=Platypus	GT:AD:AF:DP	1/0:16,37:0.70:53
chr20	45195274	rs56923216	C	A	2233.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr20	45204266	rs1880898	G	A	9516.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:0,357:1.00:357
chr20	45220862	rs60378212	G	GCATA	867.73	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:20,23:0.53:43
chr20	45221261	rs6066032	G	T	336.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:18,15:0.45:33
chr20	45229042	rs200766549	A	G	782.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.585;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=3.539;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.97;ReadPosRankSum=-1.102;SOR=0.268;set=HC	GT:AD:AF:DP	0/1:28,21:0.43:49
chr20	45229044	rs202120025	A	G	811.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.920;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=3.496;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.92;ReadPosRankSum=-1.077;SOR=0.275;set=HC	GT:AD:AF:DP	0/1:29,22:0.43:51
chr20	45229046	rs79453166	G	A	811.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.846;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=1.639;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.61;ReadPosRankSum=-1.285;SOR=0.301;set=HC	GT:AD:AF:DP	0/1:29,23:0.44:52
chr20	45315769	rs11550540	T	C	2100.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:144,107:0.43:251
chr20	45725835	.	C	CT	2997.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.502;ClippingRankSum=0.000;DP=325;ExcessHet=3.0103;FS=0.419;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.922;QD=9.93;ReadPosRankSum=-0.080;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:144,158:0.52:302
chr20	45725959	rs947018	A	G	2163.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr20	45795744	rs3091782	T	C	1690.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:102,86:0.46:188
chr20	45795855	rs3092020	A	G	489.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:22,24:0.52:46
chr20	45797749	.	TTC	T	64.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.213;ClippingRankSum=0.000;DP=317;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=3.733;QD=0.22;ReadPosRankSum=-1.067;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:250,38:0.13:288
chr20	45797883	rs3091653	C	T	3551.77	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:192,173:0.47:365
chr20	45797954	rs3091593	T	A	1679.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:78,77:0.50:155
chr20	45798014	rs3091985	C	G	675.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:34,28:0.45:62
chr20	45801319	rs3827049	T	A	459.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:29,21:0.42:50
chr20	45809652	rs2235907	A	G	814.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:28,34:0.55:62
chr20	45811860	rs8124918	A	G	1455.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:62,68:0.52:130
chr20	45816594	rs3818012	G	A	2304.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr20	45816639	rs3818013	A	G	9555.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.78;SOR=1.770;set=HC	GT:AD:AF:DP	1/1:0,200:1.00:200
chr20	45816649	rs3818014	C	T	10162.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.82;SOR=1.720;set=HC	GT:AD:AF:DP	1/1:0,243:1.00:243
chr20	45853037	rs2664544	A	G	11555.77	.	AC=2;AF=1.00;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	1/1:0,409:1.00:409
chr20	45856045	rs1124178	A	G	3141.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr20	45878003	.	G	GA	78.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.513;ClippingRankSum=0.000;DP=230;ExcessHet=3.0103;FS=0.755;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.36;ReadPosRankSum=-0.422;SOR=0.563;set=HC	GT:AD:AF:DP	0/1:184,35:0.16:219
chr20	45905651	rs3746485	T	C	420.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.725;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.65;ReadPosRankSum=0.879;SOR=0.566;set=HC	GT:AD:AF:DP	0/1:30,25:0.45:55
chr20	45905654	rs377243437	T	TA	62.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.047;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.65;ReadPosRankSum=0.310;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:27,11:0.29:38
chr20	45923383	rs2076402	G	T	5649.77	.	AC=1;AF=0.500;AN=2;DB;DP=602;set=Intersection	GT:AD:AF:DP	0/1:317,266:0.46:583
chr20	45978591	rs5841687	CA	C	4586.73	.	AC=1;AF=0.500;AN=2;DB;DP=518;set=Intersection	GT:AD:AF:DP	0/1:224,271:0.55:495
chr20	46256797	rs2273023	C	G	2324.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:131,108:0.45:239
chr20	46264888	rs2230782	G	C	5186.77	.	AC=1;AF=0.500;AN=2;DB;DP=511;set=Intersection	GT:AD:AF:DP	0/1:266,242:0.48:508
chr20	46266543	.	G	GT	408.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.868;ClippingRankSum=0.000;DP=195;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.414;QD=2.92;ReadPosRankSum=0.408;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:97,43:0.31:140
chr20	46267950	rs4810648	C	T	6611.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr20	46279604	rs202165867	T	TA	46.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.594;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=4.468;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=2.082;QD=0.75;ReadPosRankSum=-0.562;SOR=0.141;set=HC	GT:AD:AF:DP	0/1:50,12:0.19:62
chr20	46279613	rs2745724	G	A	1279.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.373;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.13;MQRankSum=0.397;QD=19.69;ReadPosRankSum=-1.032;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:7,58:0.89:65
chr20	46279836	rs147879509	ACAGCAG	ACAG,A	8807.73	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=588;set=Intersection	GT:AF:DP	0/1:0.81:280
chr20	46282339	rs3092324	A	AAT	1900.73	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:74,69:0.48:143
chr20	46282346	rs3092417	A	G	2753.73	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:66,68:0.51:134
chr20	46287012	rs444271	C	G	7351.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr20	46292149	rs2235734	T	G	684.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:27,26:0.49:53
chr20	46294725	rs2076545	C	T	3022.77	.	AC=1;AF=0.500;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	0/1:184,151:0.45:335
chr20	46365571	rs3810526	A	G	3202.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:148,158:0.52:306
chr20	47244523	rs8121156	A	G	527.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.807;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=13.546;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.51;ReadPosRankSum=-1.371;SOR=1.506;set=HC	GT:AD:AF:DP	0/1:34,28:0.45:62
chr20	47244598	rs6095217	A	G	290.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:3,13:0.81:16
chr20	47249189	rs4413212	T	C	3508.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:159,164:0.51:323
chr20	47253043	rs11553083	G	A	3077.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:115,143:0.55:258
chr20	47253150	rs2664521	T	C	13500.77	.	AC=2;AF=1.00;AN=2;DB;DP=516;set=Intersection	GT:AD:AF:DP	1/1:0,512:1.00:512
chr20	47260936	rs6019344	A	G	6601.77	.	AC=1;AF=0.500;AN=2;DB;DP=686;set=Intersection	GT:AD:AF:DP	0/1:350,331:0.49:681
chr20	47272963	rs3091871	G	GC	22765.73	.	AC=2;AF=1.00;AN=2;DB;DP=615;set=Intersection	GT:AD:AF:DP	1/1:0,611:1.00:611
chr20	47273037	rs723291	C	T	6920.77	.	AC=1;AF=0.500;AN=2;DB;DP=650;set=Intersection	GT:AD:AF:DP	0/1:312,336:0.52:648
chr20	47283059	rs149151112	TTTATTA	T	1721.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.711;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=2.920;MLEAC=1;MLEAF=0.500;MQ=60.47;MQRankSum=1.913;QD=19.57;ReadPosRankSum=-1.783;SOR=1.036;set=HC	GT:AD:AF:DP	0/1:41,47:0.53:88
chr20	47296014	rs2904167	T	C	640.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:30,28:0.48:58
chr20	47305109	rs11086260	C	CA	1624.73	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:38,51:0.57:89
chr20	47307618	rs3746820	G	A	3977.77	.	AC=1;AF=0.500;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	0/1:191,199:0.51:390
chr20	47317276	rs35913794	C	G	572.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:11,27:0.71:38
chr20	47361519	rs3746816	T	C	554.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:38,25:0.40:63
chr20	47538333	rs2273101	C	T	2000.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:56,87:0.61:143
chr20	47580347	rs2295031	A	G	3187.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:172,148:0.46:320
chr20	47610896	rs2295033	C	T	1280.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:85,60:0.41:145
chr20	47615074	rs60107724	TA	T	136.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.105;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=1.309;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.574;QD=1.73;ReadPosRankSum=-0.460;SOR=0.450;set=HC	GT:AD:AF:DP	0/1:58,21:0.27:79
chr20	47626736	rs2295579	A	T	1127.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:32,43:0.57:75
chr20	47626847	rs2295580	T	C	4051.77	.	AC=1;AF=0.500;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	0/1:207,193:0.48:400
chr20	47627095	rs6095395	A	G	457.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:32,23:0.42:55
chr20	47628368	rs371203595	ATG	A	297.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.055;ClippingRankSum=0.000;DB;DP=383;ExcessHet=3.0103;FS=1.421;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.82;ReadPosRankSum=0.611;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:318,46:0.13:364
chr20	47628434	rs2273531	T	C	8342.77	.	AC=1;AF=0.500;AN=2;DB;DP=767;set=Intersection	GT:AD:AF:DP	0/1:347,407:0.54:754
chr20	47639464	rs2426106	G	C	672.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:49,32:0.40:81
chr20	47639737	rs7270848	A	G	1426.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:67,59:0.47:126
chr20	47645002	rs73623293	G	GT	1864.73	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:62,60:0.49:122
chr20	47648454	.	C	CA	72.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.585;ClippingRankSum=0.000;DP=179;ExcessHet=3.0103;FS=2.264;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=0.000;QD=0.45;ReadPosRankSum=-0.473;SOR=0.972;set=HC	GT:AD:AF:DP	0/1:131,31:0.19:162
chr20	47649510	.	C	CA	649.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.811;ClippingRankSum=0.000;DP=329;ExcessHet=3.0103;FS=0.569;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=3.578;QD=2.19;ReadPosRankSum=-0.959;SOR=0.603;set=HC	GT:AD:AF:DP	0/1:215,82:0.28:297
chr20	47675176	rs2064853	T	A	894.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.565;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=1.625;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.95;ReadPosRankSum=1.925;SOR=0.871;set=HC	GT:AD:AF:DP	0/1:56,44:0.44:100
chr20	47679655	rs10714453	AT	A	286.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.504;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=2.103;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.03;ReadPosRankSum=0.304;SOR=1.302;set=HC	GT:AD:AF:DP	0/1:13,9:0.41:22
chr20	47679663	rs201335585	T	A	292.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.748;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.20;ReadPosRankSum=-0.264;SOR=1.051;set=HC	GT:AD:AF:DP	0/1:14,10:0.42:24
chr20	47679963	rs6019621	C	T	203.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.711;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.70;ReadPosRankSum=0.707;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:11,10:0.48:21
chr20	47685320	rs2227946	G	C	5586.77	.	AC=1;AF=0.500;AN=2;DB;DP=600;set=Intersection	GT:AD:AF:DP	0/1:325,263:0.45:588
chr20	47689036	rs79186842	A	G	2357.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:98,102:0.51:200
chr20	47691211	rs2075676	C	A	2292.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:107,108:0.50:215
chr20	47701765	rs1885163	T	C	3352.77	.	AC=1;AF=0.500;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	0/1:171,163:0.49:334
chr20	47705763	rs3092348	GTT	G	588.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.511;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=1.202;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.51;ReadPosRankSum=0.225;SOR=1.044;set=HC	GT:AD:AF:DP	0/1:30,26:0.46:56
chr20	47713063	rs17632	C	T	1472.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:77,67:0.47:144
chr20	47739814	rs2295714	C	T	2237.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:131,112:0.46:243
chr20	47770443	rs3092191	CAAA	C	1764.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.385;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=3.109;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=2.079;QD=10.32;ReadPosRankSum=1.240;SOR=1.129;set=HC	GT:AD:AF:DP	0/1:69,102:0.60:171
chr20	47775094	rs45622034	C	T	1584.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:83,70:0.46:153
chr20	47775441	.	A	AAAATAAAT	3303.73	.	AC=1;AF=0.500;AN=2;DP=277;set=Intersection	GT:AD:AF:DP	0/1:144,93:0.39:237
chr20	47775474	rs11480966	A	AC	4925.73	.	AC=1;AF=0.500;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	0/1:242,203:0.46:445
chr20	47775685	rs71184267	T	TA	241.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.496;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.57;ReadPosRankSum=3.481;SOR=0.268;set=HC	GT:AD:AF:DP	0/1:66,28:0.30:94
chr20	47839591	rs2273145	C	T	1824.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:137,95:0.41:232
chr20	47839653	rs2273146	C	T	1693.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:63,77:0.55:140
chr20	47841660	rs11553387	G	T	5508.77	.	AC=1;AF=0.500;AN=2;DB;DP=538;set=Intersection	GT:AD:AF:DP	0/1:260,264:0.50:524
chr20	47842853	rs238162	C	T	2677.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr20	47843146	rs6067024	A	T	1105.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:61,52:0.46:113
chr20	47845220	rs238165	T	A	4237.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr20	47846586	rs171130	T	C	1624.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr20	47850182	rs238148	C	T	8897.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,323:1.00:323
chr20	47852822	rs238152	G	A	15227.77	.	AC=2;AF=1.00;AN=2;DB;DP=573;set=Intersection	GT:AD:AF:DP	1/1:1,569:1.00:570
chr20	47856037	rs238156	T	G	752.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr20	47858290	rs35759030	G	A	994.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:27,41:0.60:68
chr20	47859015	rs238204	A	G	4883.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr20	47859217	rs1130146	G	A	4908.77	.	AC=1;AF=0.500;AN=2;DB;DP=571;set=Intersection	GT:AD:AF:DP	0/1:309,250:0.45:559
chr20	47859254	rs71186444	CTTTTTTTTTTTTTT	C	10948.73	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr20	47863282	rs8123912	G	C	3124.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:173,156:0.47:329
chr20	47863409	rs144647523	ATT	A	3571.73	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:11,128:0.92:139
chr20	47865372	rs238208	G	A	18087.77	.	AC=2;AF=1.00;AN=2;DB;DP=672;set=Intersection	GT:AD:AF:DP	1/1:0,660:1.00:660
chr20	47865509	rs238209	G	A	19958.77	.	AC=2;AF=1.00;AN=2;DB;DP=743;set=Intersection	GT:AD:AF:DP	1/1:0,738:1.00:738
chr20	47865784	rs6512577	C	T	5388.77	.	AC=1;AF=0.500;AN=2;DB;DP=519;set=Intersection	GT:AD:AF:DP	0/1:258,254:0.50:512
chr20	47866411	rs6063378	G	A	492.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:31,23:0.43:54
chr20	47871197	rs56335217	G	C	597.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:51,32:0.39:83
chr20	47872327	rs238220	A	G	6026.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr20	47872377	rs238221	C	G	6111.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr20	47874005	rs3021	A	G	5942.77	.	AC=1;AF=0.500;AN=2;DB;DP=515;set=Intersection	GT:AD:AF:DP	0/1:250,254:0.50:504
chr20	47874239	rs11295162	CT	C	2025.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.335;ClippingRankSum=0.000;DB;DP=357;ExcessHet=3.0103;FS=1.615;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.200;QD=8.73;ReadPosRankSum=0.048;SOR=0.526;set=HC	GT:AD:AF:DP	0/1:56,176:0.76:232
chr20	47874278	rs11343324	GC	G	1939.73	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:60,53:0.47:113
chr20	47874294	rs8121511	G	A	1773.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:38,46:0.55:84
chr20	47881581	rs6063380	A	C	466.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:7,16:0.70:23
chr20	47882893	rs238178	T	A	1380.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.88;SOR=4.125;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr20	47886684	rs57950	G	A	7455.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr20	47892270	rs238191	T	C	4433.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr20	47942184	.	G	GATTAAATGAAGTCATGTATGGGACTTGCTTGGTTTAGCATCCAAAGCACAATGAACGGGGTTATTAGATGGATGTTGTGAGA	4156.73	.	AC=1;AF=0.500;AN=2;DP=667;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=16.56;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:251,0:0:251
chr20	47948644	.	C	CT	108.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.286;ClippingRankSum=0.000;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.59;ReadPosRankSum=0.374;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:30,12:0.29:42
chr20	47948677	rs1972189	G	A	474.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:14,19:0.58:33
chr20	47951040	rs200288022	CTTTT	C,CTTT	1359.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.145;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=2.119;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=24.28;ReadPosRankSum=1.328;SOR=1.445;set=HC	GT:AD:AF:DP	1/2:4,34,18:0.61,0.32:56
chr20	47951124	.	TTG	T	57.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.908;ClippingRankSum=-0.000;DP=15;ExcessHet=3.0103;FS=2.398;MLEAC=1;MLEAF=0.500;MQ=59.44;MQRankSum=-0.000;QD=5.25;ReadPosRankSum=0.738;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:7,4:0.36:11
chr20	47956674	.	TATAATA	T	79	.	AC=1;AF=0.500;AN=2;BRF=0.49;FR=0.5000;HP=1;HapScore=2;MGOF=9;MMLQ=22;MQ=60.0;NF=1;NR=1;PP=79;QD=41.5;SC=AAACTGATGCTATAATAATAA;SbPval=0.65;Source=Platypus;TC=12;TCF=5;TCR=7;TR=2;WE=47956687;WS=47956664;set=Platypus	GT:AD:AF:DP	0/1:10,2:0.17:12
chr20	47956706	.	TA	T	248.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.291;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=1.496;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.29;ReadPosRankSum=-2.670;SOR=1.153;set=HC	GT:AD:AF:DP	0/1:18,12:0.40:30
chr20	47956709	rs372451309	TAATAA	T	242.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.726;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.59;ReadPosRankSum=-2.690;SOR=0.937;set=HC	GT:AD:AF:DP	0/1:20,12:0.38:32
chr20	47956714	.	A	T	99	.	AC=1;AF=0.500;AN=2;BRF=0.5;FR=0.5000;HP=1;HapScore=2;MGOF=9;MMLQ=27;MQ=59.76;NF=6;NR=2;PP=99;QD=16.7214015684;SC=AATAATAATAATATTAGTGGA;SbPval=0.77;Source=Platypus;TC=28;TCF=19;TCR=9;TR=8;WE=47956722;WS=47956704;set=Platypus	GT:AD:AF:DP	0/1:20,8:0.29:28
chr20	48098402	rs35235111	G	A	3162.77	.	AC=1;AF=0.500;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	0/1:172,142:0.45:314
chr20	48099623	rs74361372	C	T	1048.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.706;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.37;ReadPosRankSum=-0.349;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:25,48:0.66:73
chr20	48099637	rs34725736	CTTT	C	1795.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.299;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=0.807;QD=20.18;ReadPosRankSum=-0.733;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:31,58:0.65:89
chr20	48129706	rs5629	G	T	2683.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:105,126:0.55:231
chr20	48130628	rs6019879	T	C	628.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:24,25:0.51:49
chr20	48130982	rs7274202	C	T	464.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:30,22:0.42:52
chr20	48184462	rs6091005	C	T	42.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.366;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.35;ReadPosRankSum=1.068;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chr20	48184560	rs116939356	G	T	212.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:24,12:0.33:36
chr20	48184654	.	C	CGCGGGGCTG	545.73	.	AC=2;AF=1.00;AN=2;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.67;QD=38.98;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr20	48184734	rs7262428	G	C	323.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr20	48184839	rs566544	TT	GG	556.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.40;SOR=2.670;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr20	48184845	rs5580	A	C	601.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.98;SOR=2.985;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr20	48184857	rs566508	C	G	511.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.52;SOR=2.494;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr20	48184871	rs566468	AT	GG	453.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.38;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr20	48257149	rs421801	C	T	15203.77	.	AC=2;AF=1.00;AN=2;DB;DP=574;set=Intersection	GT:AD:AF:DP	1/1:0,570:1.00:570
chr20	48259034	rs2235855	A	G	6637.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr20	48273299	rs4810968	T	C	5073.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr20	48300990	rs6019972	C	T	2127.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr20	48301146	rs6512586	G	A	11965.77	.	AC=2;AF=1.00;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	1/1:0,454:1.00:454
chr20	48330030	rs12329570	G	C	6225.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr20	48330045	rs117026282	G	A	2872.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:148,132:0.47:280
chr20	48429462	rs76846045	G	T	1145.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:84,61:0.42:145
chr20	48467560	rs532237	G	C	1557.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr20	48479356	rs3092598	TATGA	T	2176.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr20	48491258	rs542234	T	G	25460.77	.	AC=2;AF=1.00;AN=2;DB;DP=955;set=Intersection	GT:AD:AF:DP	1/1:1,947:1.00:948
chr20	48494620	rs370267945	T	G	1104.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:39,48:0.55:87
chr20	48522330	rs495337	G	A	6607.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr20	48522585	rs492702	G	A	5510.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:2,200:0.99:202
chr20	48524827	rs2769982	A	G	5459.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr20	48561893	rs4810993	A	G	2567.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr20	48562083	rs11473738	G	GTTGGACACC	5084.73	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr20	48562797	rs34310744	C	CT	1370.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.220;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.43;MQRankSum=1.504;QD=9.39;ReadPosRankSum=-0.192;SOR=0.809;set=HC	GT:AD:AF:DP	0/1:44,102:0.70:146
chr20	48568503	rs2281216	C	T	3546.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr20	48599473	rs113842434	AC	A	518.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr20	48700947	rs67366514	T	C	5232.77	.	AC=1;AF=0.500;AN=2;DB;DP=538;set=Intersection	GT:AD:AF:DP	0/1:283,245:0.46:528
chr20	48701351	.	CT	C	268.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.754;ClippingRankSum=0.000;DP=110;ExcessHet=3.0103;FS=6.324;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.36;ReadPosRankSum=2.344;SOR=0.258;set=HC	GT:AD:AF:DP	0/1:48,32:0.40:80
chr20	48713049	rs6012831	G	A	3856.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr20	48729677	rs126907	C	G	9709.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	1/1:0,375:1.00:375
chr20	48729711	rs761214	C	T	1608.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.962;ClippingRankSum=0.000;DB;DP=340;ExcessHet=3.0103;FS=2.695;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.03;ReadPosRankSum=0.944;SOR=0.939;set=HC	GT:AD:AF:DP	0/1:170,150:0.47:320
chr20	48747697	rs55894522	T	C	439.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:27,22:0.45:49
chr20	48760238	rs10574784	CTT	C	1008.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.973;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=2.242;QD=10.96;ReadPosRankSum=-0.267;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:48,44:0.48:92
chr20	48770159	rs232733	T	C	3665.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr20	48808011	rs4253439	C	T	8990.77	.	AC=1;AF=0.500;AN=2;DB;DP=910;MQ=60.02;set=Intersection	GT:AD:AF:DP	0/1:457,425:0.48:882
chr20	48894872	rs3761180	T	C	4807.77	.	AC=1;AF=0.500;AN=2;DB;DP=560;set=Intersection	GT:AD:AF:DP	0/1:297,245:0.45:542
chr20	48894919	rs12625213	C	T	2934.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:179,139:0.44:318
chr20	49181345	rs16995294	T	A	2461.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:71,103:0.59:174
chr20	49191228	rs1885177	A	C	5339.77	.	AC=1;AF=0.500;AN=2;DB;DP=474;set=Intersection	GT:AD:AF:DP	0/1:222,246:0.53:468
chr20	49194866	rs3215684	A	AT	2493.73	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:101,76:0.43:177
chr20	49209710	rs189986569	C	T	2310.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:79,105:0.57:184
chr20	49214156	rs6020624	A	G	3520.77	.	AC=1;AF=0.500;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	0/1:162,176:0.52:338
chr20	49225767	.	C	T	6296.77	.	AC=1;AF=0.500;AN=2;DP=660;set=Intersection	GT:AD:AF:DP	0/1:357,300:0.46:657
chr20	49225953	rs73615305	A	G	3359.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:151,142:0.48:293
chr20	49227294	rs4811083	T	C	1585.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:73,66:0.47:139
chr20	49227544	rs144167038	G	GGGCTTAGTGCCGGGCC	4717.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.547;ClippingRankSum=0.000;DB;DP=307;ExcessHet=3.0103;FS=5.838;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=2.239;QD=17.16;ReadPosRankSum=-1.650;SOR=1.020;set=HC	GT:AD:AF:DP	0/1:152,123:0.45:275
chr20	49232725	rs77423028	C	G	880.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:26,41:0.61:67
chr20	49236475	rs117180526	G	A	2662.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:146,131:0.47:277
chr20	49236478	rs6122953	G	A	3334.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:138,152:0.52:290
chr20	49434669	rs5841815	TA	T	1538.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.065;ClippingRankSum=0.000;DB;DP=297;ExcessHet=3.0103;FS=3.322;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=2.275;QD=5.48;ReadPosRankSum=1.050;SOR=0.935;set=HC	GT:AD:AF:DP	0/1:128,153:0.54:281
chr20	49434829	rs11283878	T	TGCCTGGAAGGCGTGGGTTTAG	2757.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.797;ClippingRankSum=0.000;DB;DP=312;ExcessHet=3.0103;FS=9.492;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.49;ReadPosRankSum=3.092;SOR=1.470;set=HC	GT:AD:AF:DP	0/1:107,71:0.40:178
chr20	49458479	rs6096118	C	G	510.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:29,22:0.43:51
chr20	49507892	rs761240	T	G	2626.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr20	49507924	rs142825371	C	T	1808.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:61,74:0.55:135
chr20	49557764	.	AAT	A	143.80	.	AC=2;AF=1.00;AN=2;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.97;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr20	49620783	rs1054268	G	T	5975.77	.	AC=1;AF=0.500;AN=2;DB;DP=572;set=Intersection	GT:AD:AF:DP	0/1:285,279:0.49:564
chr20	49621149	rs6122993	T	C	5144.77	.	AC=1;AF=0.500;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	0/1:212,238:0.53:450
chr20	49621399	rs4811110	G	C	2340.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:69,108:0.61:177
chr20	50015107	rs11468602	TA	T	331.25	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:4,23:0.85:27
chr20	50051642	rs112935631	G	A	742.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:31,31:0.50:62
chr20	50052427	rs139515557	T	C	293.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:17,15:0.47:32
chr20	50071258	rs228840	A	G	3183.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr20	50092027	rs6013193	T	G	3417.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr20	50092287	rs6021231	T	C	1498.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr20	50140627	rs3746420	G	C	3293.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:168,155:0.48:323
chr20	50224161	rs2273089	C	T	1727.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:87,86:0.50:173
chr20	50224206	rs3818004	G	A	1155.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:57,56:0.50:113
chr20	50225235	rs6021312	G	A	1510.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:76,63:0.45:139
chr20	50230462	rs2235863	A	G	2396.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:108,107:0.50:215
chr20	50233926	rs139658069	ATTCT	A	3021.73	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:121,83:0.41:204
chr20	50234151	rs13044000	G	T	1784.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:79,83:0.51:162
chr20	50235577	rs2295004	G	A	5747.77	.	AC=1;AF=0.500;AN=2;DB;DP=528;set=Intersection	GT:AD:AF:DP	0/1:249,270:0.52:519
chr20	50235760	rs13040403	A	G	1464.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:60,62:0.51:122
chr20	50238545	rs2235862	A	G	2488.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:133,124:0.48:257
chr20	50241714	rs2235859	C	A	2232.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:96,98:0.51:194
chr20	50243941	rs1467413	A	G	564.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:13,22:0.63:35
chr20	50244098	rs2426317	T	C	2915.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:155,139:0.47:294
chr20	50245732	rs2426318	G	C	1571.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:51,59:0.54:110
chr20	50255762	rs2426333	T	C	436.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:23,17:0.42:40
chr20	50256107	rs2426334	T	C	199.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:17,10:0.37:27
chr20	50286484	rs5841856	T	TA	1932.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.115;ClippingRankSum=0.000;DB;DP=319;ExcessHet=3.0103;FS=0.462;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.669;QD=6.30;ReadPosRankSum=-0.122;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:166,141:0.46:307
chr20	50287736	rs2255341	C	T	8884.77	.	AC=1;AF=0.500;AN=2;DB;DP=883;set=Intersection	GT:AD:AF:DP	0/1:452,424:0.48:876
chr20	50287790	rs2255342	A	G	7981.77	.	AC=1;AF=0.500;AN=2;DB;DP=901;set=Intersection	GT:AD:AF:DP	0/1:487,404:0.45:891
chr20	50287925	rs2255358	A	G	2876.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:143,128:0.47:271
chr20	50290654	rs6091346	T	C	3132.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:118,148:0.56:266
chr20	50292763	rs11339305	GA	G	1370.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.622;ClippingRankSum=0.000;DB;DP=298;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.88;ReadPosRankSum=-0.597;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:120,113:0.48:233
chr20	50307502	rs4811222	G	C	5167.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr20	50310483	rs143733288	A	ATC	17780.73	.	AC=2;AF=1.00;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	1/1:2,399:1.00:401
chr20	50310668	rs4811225	C	T	3076.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:106,142:0.57:248
chr20	50314052	rs58432772	C	T	5586.77	.	AC=1;AF=0.500;AN=2;DB;DP=576;set=Intersection	GT:AD:AF:DP	0/1:298,271:0.48:569
chr20	50314200	rs1205690	A	G	2876.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr20	50329416	rs1205698	T	C	5195.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr20	50329704	rs1205699	G	A	1569.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:81,69:0.46:150
chr20	50342285	rs1205708	A	G	6076.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr20	50342555	rs1205709	C	T	3178.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr20	50346491	rs142435125	C	A	3105.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:129,146:0.53:275
chr20	50384821	rs3746416	A	G	3165.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:161,162:0.50:323
chr20	50408482	rs6013281	A	G	11032.77	.	AC=2;AF=1.00;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	1/1:0,419:1.00:419
chr20	50668746	rs201746789	CTTTATATTTATATA	C	233.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.97;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr20	50713652	rs10715971	TA	T	4253.73	.	AC=1;AF=0.500;AN=2;DB;DP=664;set=Intersection	GT:AD:AF:DP	0/1:327,294:0.47:621
chr20	50734144	rs67451131	C	T	1673.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:57,73:0.56:130
chr20	50734238	rs67904269	T	C	3585.77	.	AC=1;AF=0.500;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	0/1:221,189:0.46:410
chr20	50734367	rs2180366	T	C	721.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:33,32:0.49:65
chr20	50768672	rs3838014	GT	G	963.73	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:42,55:0.57:97
chr20	50769183	rs3746415	G	A	4725.77	.	AC=1;AF=0.500;AN=2;DB;DP=448;set=Intersection	GT:AD:AF:DP	0/1:221,221:0.50:442
chr20	50769379	rs3746414	C	T	8099.77	.	AC=1;AF=0.500;AN=2;DB;DP=754;set=Intersection	GT:AD:AF:DP	0/1:364,384:0.51:748
chr20	50769549	rs3746413	A	G	8113.77	.	AC=1;AF=0.500;AN=2;DB;DP=744;set=Intersection	GT:AD:AF:DP	0/1:352,387:0.52:739
chr20	50770782	rs3787178	G	A	3159.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:142,151:0.52:293
chr20	50771635	rs1555328	C	A	1697.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:50,70:0.58:120
chr20	50775605	rs6021760	G	C	2791.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:153,131:0.46:284
chr20	50777026	rs3818198	A	G	1664.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:78,70:0.47:148
chr20	50781298	rs72411807	T	TAA	1915.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.169;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=2.540;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=0.000;QD=10.03;ReadPosRankSum=1.484;SOR=0.967;set=HC	GT:AD:AF:DP	0/1:83,108:0.57:191
chr20	50781725	rs6021770	G	A	2276.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:153,112:0.42:265
chr20	50782102	rs2038429	T	C	724.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:25,35:0.58:60
chr20	50782303	rs6021771	A	G	1215.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:51,51:0.50:102
chr20	50782343	rs6021772	C	A	1590.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:99,75:0.43:174
chr20	50782608	rs2273472	G	T	830.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:51,38:0.43:89
chr20	51802132	rs2010156	T	C	7262.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr20	51870849	rs739870	T	C	14135.77	.	AC=2;AF=1.00;AN=2;DB;DP=520;set=Intersection	GT:AD:AF:DP	1/1:0,516:1.00:516
chr20	52185814	rs4602270	C	A	2555.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr20	52188399	rs139374346	G	GA	855.73	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:67,58:0.46:125
chr20	52192417	rs45439395	C	T	3959.77	.	AC=1;AF=0.500;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	0/1:221,195:0.47:416
chr20	52192637	rs34323943	T	C	2472.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:98,108:0.52:206
chr20	52193088	rs6063966	C	T	4200.77	.	AC=1;AF=0.500;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	0/1:222,204:0.48:426
chr20	52557934	rs74179252	G	GGT	293.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.898;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=5.701;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=0.000;QD=3.26;ReadPosRankSum=1.562;SOR=1.516;set=HC	GT:AD:AF:DP	0/1:71,19:0.21:90
chr20	52557950	.	T	TGTGTGTGTGCGCGCGC	504	.	AC=1;AF=0.500;AN=2;BRF=0.47;FR=0.5000;HP=2;HapScore=2;MGOF=17;MMLQ=24;MQ=60.0;NF=10;NR=13;PP=504;QD=22.1304347826;SC=TGTGTGTGTGTGTGTGTGCGC;SbPval=0.5;Source=Platypus;TC=61;TCF=25;TCR=36;TR=23;WE=52557966;WS=52557940;set=Platypus	GT:AD:AF:DP	0/1:38,23:0.38:61
chr20	52557958	.	C	CGCGCGCGTGTGTGT	1059.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.075;ClippingRankSum=0.000;DP=128;ExcessHet=3.0103;FS=2.128;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=0.000;QD=9.81;ReadPosRankSum=1.276;SOR=1.051;set=HC	GT:AD:AF:DP	0/1:73,35:0.32:108
chr20	52561469	rs1055246	A	G	3282.77	.	AC=1;AF=0.500;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	0/1:180,156:0.46:336
chr20	52561702	rs4811486	C	T	2248.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:64,96:0.60:160
chr20	52592140	rs11474654	G	GTA	1532.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.737;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=0.000;QD=22.54;ReadPosRankSum=-0.423;SOR=1.033;set=HC	GT:AD:AF:DP	0/1:12,56:0.82:68
chr20	52611427	rs146234679	TACACACACAC	TAC,T	6624.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=200;set=Intersection	GT:AF:DP	1/1:0.99:165
chr20	52645114	rs61749688	T	C	2522.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:163,123:0.43:286
chr20	52645166	rs158551	A	G	2414.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:158,111:0.41:269
chr20	52645534	rs466264	T	C	3778.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:4,148:0.97:152
chr20	52674537	.	A	AT	172.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.416;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.32;ReadPosRankSum=0.000;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:24,16:0.40:40
chr20	52674615	rs465184	A	G	6433.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr20	52675188	rs394732	G	T	2280.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:2,84:0.98:86
chr20	52675259	rs2020975	G	T	1287.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:49,61:0.55:110
chr20	52684837	rs3787551	G	T	1927.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:131,94:0.42:225
chr20	52685084	rs290446	T	C	364.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:30,19:0.39:49
chr20	52781251	rs2762939	G	C	731.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:29,30:0.51:59
chr20	52786219	rs2296241	G	A	7320.77	.	AC=1;AF=0.500;AN=2;DB;DP=655;set=Intersection	GT:AD:AF:DP	0/1:308,338:0.52:646
chr20	52788314	rs2259735	T	C	1382.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:77,71:0.48:148
chr20	52789743	rs2248137	C	G	2888.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:88,117:0.57:205
chr20	52840743	rs11472518	C	CTTTTTT	1554.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.882;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=1.463;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=0.000;QD=19.93;ReadPosRankSum=-0.846;SOR=0.597;set=HC	GT:AD:AF:DP	0/1:27,51:0.65:78
chr20	53205474	rs138084181	A	G	102.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:14,6:0.30:20
chr20	54823779	rs13044293	G	T	6848.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr20	54961463	rs1047972	T	C	7681.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr20	54963149	rs67542863	C	CGACAAGACCAACCTCCATGTGGGTTTATAAATGTGAATGAGATTACAGATTATTCAATTTA	3793.73	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=102.53;SOR=1.121;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr20	54974424	rs2426617	C	A	3812.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr20	55025512	rs6024884	C	G	993.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:51,45:0.47:96
chr20	55025762	rs6069753	G	A	1721.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:64,79:0.55:143
chr20	55028167	rs2870738	G	A	5200.77	.	AC=1;AF=0.500;AN=2;DB;DP=493;set=Intersection	GT:AD:AF:DP	0/1:241,244:0.50:485
chr20	55033420	rs35031530	C	T	5993.77	.	AC=1;AF=0.500;AN=2;DB;DP=591;set=Intersection	GT:AD:AF:DP	0/1:292,294:0.50:586
chr20	55033476	rs3746623	C	G	15895.77	.	AC=2;AF=1.00;AN=2;DB;DP=579;set=Intersection	GT:AD:AF:DP	1/1:0,571:1.00:571
chr20	55033635	rs3746624	C	T	4406.77	.	AC=1;AF=0.500;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	0/1:164,203:0.55:367
chr20	55033647	rs3746625	T	C	9025.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	1/1:0,330:1.00:330
chr20	55033713	rs3746626	G	A	8628.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr20	55033856	rs4811697	A	C	3542.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr20	55045632	rs6024898	G	A	10434.77	.	AC=2;AF=1.00;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	1/1:1,386:1.00:387
chr20	55045843	rs6014740	T	C	4730.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr20	55047632	rs11482055	T	TA	322.79	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:2,18:0.90:20
chr20	55048283	rs6024901	A	G	1222.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:1,40:0.98:41
chr20	55048496	rs11471796	T	TGAG	4384.73	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr20	55049908	rs1474890	A	G	5052.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr20	55071620	rs6014752	T	G	1261.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr20	55072472	rs6024911	A	G	14188.77	.	AC=2;AF=1.00;AN=2;DB;DP=513;set=Intersection	GT:AD:AF:DP	1/1:0,504:1.00:504
chr20	55088404	rs1059768	A	G	4537.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr20	55209257	rs35023929	T	C	1755.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:112,100:0.47:212
chr20	55211581	rs5842120	C	CA	167.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.385;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.29;ReadPosRankSum=-0.785;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:30,21:0.41:51
chr20	55212711	rs6025024	T	G	474.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:30,21:0.41:51
chr20	55748206	rs2148328	G	A	2947.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:137,139:0.50:276
chr20	55918014	rs2236330	A	G	195.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:18,10:0.36:28
chr20	55918346	.	A	G	1187.77	.	AC=1;AF=0.500;AN=2;DP=123;set=Intersection	GT:AD:AF:DP	0/1:58,60:0.51:118
chr20	55929881	rs4811837	T	C	6082.77	.	AC=1;AF=0.500;AN=2;DB;DP=551;set=Intersection	GT:AD:AF:DP	0/1:259,284:0.52:543
chr20	55966904	rs117963839	C	T	1460.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:67,65:0.49:132
chr20	55967715	.	C	G	7123.77	.	AC=1;AF=0.500;AN=2;DP=695;set=Intersection	GT:AD:AF:DP	0/1:337,348:0.51:685
chr20	55975099	rs6014986	T	A	1551.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:50,67:0.57:117
chr20	55982579	rs3764719	T	C	10779.77	.	AC=1;AF=0.500;AN=2;DB;DP=1053;set=Intersection	GT:AD:AF:DP	0/1:526,509:0.49:1035
chr20	56064099	rs116593113	TT	CC	4587.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;JOINED;set=Intersection	GT:AD:AF:DP	0/1:118,119:0.50:237
chr20	56064157	rs6128051	C	T	5135.77	.	AC=1;AF=0.500;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	0/1:223,241:0.52:464
chr20	56064267	rs6099656	T	C	4651.77	.	AC=1;AF=0.500;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	0/1:200,228:0.53:428
chr20	56075371	rs113098798	C	T	564.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:20,26:0.57:46
chr20	56089869	rs11086612	GT	G	5569.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.311;ClippingRankSum=0.000;DB;DP=810;ExcessHet=3.0103;FS=1.110;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.524;QD=7.48;ReadPosRankSum=0.352;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:326,419:0.56:745
chr20	56098070	rs11477755	GA	G	1895.73	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:113,97:0.46:210
chr20	56098733	rs6025606	T	C	4698.77	.	AC=1;AF=0.500;AN=2;DB;DP=486;set=Intersection	GT:AD:AF:DP	0/1:255,213:0.46:468
chr20	56099114	rs6070128	C	G	7697.77	.	AC=1;AF=0.500;AN=2;DB;DP=779;set=Intersection	GT:AD:AF:DP	0/1:409,357:0.47:766
chr20	56099305	rs11699220	G	A	1373.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:38,57:0.60:95
chr20	56131053	rs17496809	G	A	562.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:32,24:0.43:56
chr20	56131387	rs117072392	ACG	CTT	2344.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;JOINED;MQ=60.09;set=Intersection	GT:AD:AF:DP	0/1:57,61:0.52:118
chr20	56137184	rs6070157	C	T	2422.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:168,115:0.41:283
chr20	56137895	rs707555	G	C	3080.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:145,143:0.50:288
chr20	56138068	rs75308972	G	A	3917.77	.	AC=1;AF=0.500;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	0/1:215,188:0.47:403
chr20	56138648	rs11552145	G	A	1847.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:98,90:0.48:188
chr20	56139403	rs2070756	T	C	4943.77	.	AC=1;AF=0.500;AN=2;DB;DP=534;set=Intersection	GT:AD:AF:DP	0/1:279,243:0.47:522
chr20	56139967	rs1023049	C	T	527.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:16,22:0.58:38
chr20	56179875	rs8118279	A	G	1071.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:32,43:0.57:75
chr20	56185303	rs41275648	G	A	1874.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:110,90:0.45:200
chr20	56186884	rs2865394	T	C	12749.77	.	AC=2;AF=1.00;AN=2;DB;DP=484;set=Intersection	GT:AD:AF:DP	1/1:0,481:1.00:481
chr20	56190634	rs2073145	C	T	6203.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:2,233:0.99:235
chr20	56191172	rs11468882	CAG	C	20764.73	.	AC=2;AF=1.00;AN=2;DB;DP=539;set=Intersection	GT:AD:AF:DP	1/1:0,508:1.00:508
chr20	56191475	rs16981188	C	T	5139.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:2,194:0.99:196
chr20	56227532	rs6025699	T	C	7419.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr20	56228019	rs8183538	G	C	4232.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr20	56470471	rs73177830	G	A	2635.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:112,128:0.53:240
chr20	56726107	rs6070358	C	T	12621.77	.	AC=2;AF=1.00;AN=2;DB;DP=492;set=Intersection	GT:AD:AF:DP	1/1:0,476:1.00:476
chr20	56793546	rs583987	A	G	4066.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:1,155:0.99:156
chr20	56793706	rs584855	G	A	11135.77	.	AC=2;AF=1.00;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	1/1:0,416:1.00:416
chr20	56793764	rs1192511	G	A	7560.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr20	56796266	rs8122848	A	G	488.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:17,21:0.55:38
chr20	56796267	rs521615	C	T	377.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:21,17:0.45:38
chr20	56796386	rs41275660	A	C	2737.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:110,127:0.54:237
chr20	56798017	rs573485	T	C	853.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:65,41:0.39:106
chr20	56803353	rs1192514	C	T	5633.77	.	AC=1;AF=0.500;AN=2;DB;DP=573;set=Intersection	GT:AD:AF:DP	0/1:291,276:0.49:567
chr20	56803676	.	C	CCCG	106.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.349;ClippingRankSum=-0.000;DP=12;ExcessHet=3.0103;FS=2.616;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.89;ReadPosRankSum=-2.193;SOR=0.169;set=HC	GT:AD:AF:DP	0/1:8,4:0.33:12
chr20	56806821	rs586193	A	C	3921.77	.	AC=1;AF=0.500;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	0/1:181,184:0.50:365
chr20	56807969	rs3818744	A	G	1461.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:72,72:0.50:144
chr20	56809652	rs619838	T	C	3947.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr20	56810446	rs633276	A	G	10777.77	.	AC=2;AF=1.00;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	1/1:0,380:1.00:380
chr20	56810484	rs503900	C	T	5723.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr20	56811399	rs201980234	AC	A	65.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.090;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.89;ReadPosRankSum=0.380;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:57,17:0.23:74
chr20	56811400	rs474212	C	A	1088.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.098;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.71;ReadPosRankSum=-0.335;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:17,57:0.77:74
chr20	56813472	rs678936	G	C	482.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:15,17:0.53:32
chr20	56814195	rs3831236	A	AC	1824.73	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:63,56:0.47:119
chr20	56814892	rs614507	G	T	2382.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:144,120:0.45:264
chr20	56815878	rs514706	A	T	1436.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr20	56820702	rs595292	G	T	6140.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr20	56820880	rs3746406	C	T	6213.77	.	AC=1;AF=0.500;AN=2;DB;DP=681;set=Intersection	GT:AD:AF:DP	0/1:360,305:0.46:665
chr20	56821127	rs3746405	A	G	2136.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:140,110:0.44:250
chr20	56822236	rs1541117	C	A	507.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:33,25:0.43:58
chr20	56822536	rs4811972	G	A	712.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:35,32:0.48:67
chr20	56823390	rs11471230	GTTTT	G	2735.73	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr20	56825826	rs2282205	A	C	312.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:8,14:0.64:22
chr20	56826934	rs6064631	T	A	1962.73	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:108,106:0.50:214
chr20	56838389	rs6128295	A	G	445.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:36,23:0.39:59
chr20	56846580	rs6015238	T	A	2239.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.454;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=2.070;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.66;ReadPosRankSum=-1.282;SOR=0.910;set=HC	GT:AD:AF:DP	0/1:65,99:0.60:164
chr20	56861637	rs6026181	A	G	570.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:36,27:0.43:63
chr20	56884186	rs483569	T	G	901.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:26,36:0.58:62
chr20	56886062	rs542165	A	G	4479.77	.	AC=1;AF=0.500;AN=2;DB;DP=534;set=Intersection	GT:AD:AF:DP	0/1:307,222:0.42:529
chr20	56918598	rs501253	G	A	302.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:26,17:0.40:43
chr20	56934551	rs3069388	C	CTT	1195.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.122;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=4.248;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.79;ReadPosRankSum=-1.358;SOR=0.338;set=HC	GT:AD:AF:DP	0/1:84,92:0.52:176
chr20	57009796	rs2234487	C	T	832.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:30,39:0.57:69
chr20	57011383	rs201039529	CTTTTTTTTTTTTTT	C	190.82	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.16;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr20	57045667	rs1980576	T	C	3469.77	.	AC=1;AF=0.500;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	0/1:168,177:0.51:345
chr20	57045765	rs3946003	A	G	1266.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:62,57:0.48:119
chr20	57244493	rs2296524	G	A	2119.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:135,106:0.44:241
chr20	57246478	rs11481330	C	CT	573.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.493;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.71;ReadPosRankSum=0.057;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:22,17:0.44:39
chr20	57246484	rs34865822	G	A	551.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.130;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=2.000;MLEAC=1;MLEAF=0.500;MQ=59.58;MQRankSum=0.843;QD=14.15;ReadPosRankSum=0.739;SOR=1.432;set=HC	GT:AD:AF:DP	0/1:24,15:0.38:39
chr20	57246489	rs11467780	TGTGG	T	474.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.513;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.56;MQRankSum=0.836;QD=12.83;ReadPosRankSum=0.424;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:23,14:0.38:37
chr20	57266592	rs6128401	C	G	1549.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:64,70:0.52:134
chr20	57266700	rs6123822	T	C	702.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:27,28:0.51:55
chr20	57266749	rs11471424	CTTTT	C	1393.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.824;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=4.419;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=1.212;QD=18.10;ReadPosRankSum=2.854;SOR=0.271;set=HC	GT:AD:AF:DP	0/1:30,47:0.61:77
chr20	57266781	rs6128402	C	T	2607.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:100,127:0.56:227
chr20	57266913	rs6123823	T	C	3668.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:154,179:0.54:333
chr20	57267942	rs6092682	T	C	658.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:74,40:0.35:114
chr20	57268867	rs3746396	C	A	10092.77	.	AC=1;AF=0.500;AN=2;DB;DP=1015;set=Intersection	GT:AD:AF:DP	0/1:508,498:0.50:1006
chr20	57268994	rs6100166	G	C	1538.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:50,69:0.58:119
chr20	57273545	rs6092683	G	A	1498.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:63,64:0.50:127
chr20	57273885	rs2296526	T	C	5050.77	.	AC=1;AF=0.500;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	0/1:223,230:0.51:453
chr20	57274077	rs6092684	T	A	562.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:26,24:0.48:50
chr20	57274151	rs2296528	G	C	1272.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:81,62:0.43:143
chr20	57275949	rs6070554	A	C	3343.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr20	57280575	rs6100174	T	C	3209.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:183,167:0.48:350
chr20	57360653	rs61349087	C	G	97.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:11,5:0.31:16
chr20	57360707	.	G	C	333.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.823;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.91;ReadPosRankSum=-0.675;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:8,16:0.67:24
chr20	57360720	rs144252791	AGAAAGAAAGAAG	A	268.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.602;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=1.926;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.14;ReadPosRankSum=1.770;SOR=1.321;set=HC	GT:AD:AF:DP	0/1:24,9:0.27:33
chr20	57360930	rs6092694	T	C	238.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:7,11:0.61:18
chr20	57415110	rs1800900	A	G	3724.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr20	57415455	rs1800902	C	T	19740.77	.	AC=1;AF=0.500;AN=2;DB;DP=1871;set=Intersection	GT:AD:AF:DP	0/1:909,929:0.51:1838
chr20	57415962	rs1800904	C	T	7936.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.968;ClippingRankSum=0.000;DB;DP=483;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.67;ReadPosRankSum=0.962;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:259,217:0.46:476
chr20	57415967	rs41305799	G	A	7724.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.450;ClippingRankSum=0.000;DB;DP=446;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.52;ReadPosRankSum=0.736;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:239,202:0.46:441
chr20	57415995	rs1800905	A	G	6985.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr20	57428215	rs79335353	T	G	1073.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:30,48:0.62:78
chr20	57428895	.	C	A	5845.77	.	AC=1;AF=0.500;AN=2;DP=490;set=Intersection	GT:AD:AF:DP	0/1:222,255:0.53:477
chr20	57429627	rs61749698	C	A	7376.73	.	AC=1;AF=0.500;AN=2;DB;DP=700;set=Intersection	GT:AD:AF:DP	0/1:329,360:0.52:689
chr20	57429696	.	C	CTGACGCCCCAGCCGATCCCGACTCCGGGGCGGCCCG	4709.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.579;ClippingRankSum=0.000;DP=412;ExcessHet=3.0103;FS=12.360;MLEAC=1;MLEAF=0.500;MQ=59.75;MQRankSum=-3.966;QD=14.95;ReadPosRankSum=-2.186;SOR=1.440;set=HC	GT:AD:AF:DP	0/1:144,171:0.54:315
chr20	57430477	rs73306256	C	G	1241.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:50,56:0.53:106
chr20	57430547	rs142555685	C	CTT	3284.73	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:84,84:0.50:168
chr20	57430568	rs75029190	A	T	3166.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:102,91:0.47:193
chr20	57475191	rs13831	A	G	812.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr20	57478448	rs2295583	A	T	1907.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr20	57478807	rs7121	C	T	4539.77	.	AC=1;AF=0.500;AN=2;DB;DP=476;set=Intersection	GT:AD:AF:DP	0/1:246,221:0.47:467
chr20	57556488	rs3746703	C	T	1461.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.318;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=0.638;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=-1.087;QD=10.83;ReadPosRankSum=0.729;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:61,74:0.55:135
chr20	57563061	rs6070684	C	T	329.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:16,15:0.48:31
chr20	57564070	rs2273360	C	T	3617.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:144,169:0.54:313
chr20	57564448	rs12479566	C	T	763.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:40,31:0.44:71
chr20	57564489	rs41314904	G	A	1723.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:53,80:0.60:133
chr20	57564695	rs17851253	C	T	4519.77	.	AC=1;AF=0.500;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	0/1:198,204:0.51:402
chr20	57565943	rs163782	G	C	4018.77	.	AC=1;AF=0.500;AN=2;DB;DP=448;set=Intersection	GT:AD:AF:DP	0/1:253,191:0.43:444
chr20	57569860	rs1043219	C	G	2505.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:71,104:0.59:175
chr20	57570568	rs13720	G	A	1065.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:42,44:0.51:86
chr20	57570854	rs3787492	G	A	1458.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:76,68:0.47:144
chr20	57572675	rs163785	A	G	2666.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr20	57572839	rs2295357	G	T	1950.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:109,94:0.46:203
chr20	57582279	rs200474697	T	TCGGCCC	688.73	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:9,19:0.68:28
chr20	57594490	rs150072434	G	C	760.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:46,33:0.42:79
chr20	57594684	rs34524896	C	T	2637.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:112,126:0.53:238
chr20	57597970	rs463312	AG	CC	6681.77	.	AC=1;AF=0.500;AN=2;DB;DP=364;JOINED;set=Intersection	GT:AD:AF:DP	0/1:186,174:0.48:360
chr20	57599016	rs163777	T	G	8729.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:0,318:1.00:318
chr20	57599402	rs6070697	G	A	6437.77	.	AC=1;AF=0.500;AN=2;DB;DP=719;set=Intersection	GT:AD:AF:DP	0/1:397,312:0.44:709
chr20	57610059	rs151358	C	A	888.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:43,35:0.45:78
chr20	57612390	rs151359	C	G	806.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:67,44:0.40:111
chr20	57613373	rs151360	T	C	1375.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:61,57:0.48:118
chr20	57613704	rs199760980	CAA	C,CA	863.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.719;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=1.637;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=11.22;ReadPosRankSum=-1.130;SOR=1.299;set=HC	GT:AD:AF:DP	1/2:14,34,29:0.44,0.38:77
chr20	57617698	rs8121266	T	G	3506.77	.	AC=1;AF=0.500;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	0/1:182,175:0.49:357
chr20	57767002	.	G	A	4618.77	.	AC=1;AF=0.500;AN=2;DP=341;set=Intersection	GT:AD:AF:DP	0/1:145,192:0.57:337
chr20	57767043	rs259984	G	C	2739.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:215,140:0.39:355
chr20	57768399	rs442091	T	C	3423.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:159,146:0.48:305
chr20	57768657	rs41276962	T	C	4438.77	.	AC=1;AF=0.500;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	0/1:187,201:0.52:388
chr20	57768743	rs56057707	C	T	4804.77	.	AC=1;AF=0.500;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	0/1:203,213:0.51:416
chr20	57769140	rs55786258	G	C	3564.77	.	AC=1;AF=0.500;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	0/1:198,168:0.46:366
chr20	57769854	rs454356	A	G	1415.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:74,62:0.46:136
chr20	57828923	rs259957	A	C	567.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.39;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr20	57829301	rs259956	T	C	5233.77	.	AC=1;AF=0.500;AN=2;DB;DP=521;set=Intersection	GT:AD:AF:DP	0/1:268,249:0.48:517
chr20	57829821	rs3041675	C	CTT	2496.73	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:92,71:0.44:163
chr20	58179932	rs11477768	CT	C	179.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.869;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=1.439;MLEAC=1;MLEAF=0.500;MQ=59.82;MQRankSum=-1.171;QD=2.40;ReadPosRankSum=-0.347;SOR=1.220;set=HC	GT:AD:AF:DP	0/1:44,31:0.41:75
chr20	58330128	rs1182477	G	C	1133.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:53,43:0.45:96
chr20	58342130	rs2426831	T	A	674.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:42,31:0.42:73
chr20	58411441	rs2426849	T	C	302.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr20	58420336	rs1416388	G	A	4944.77	.	AC=1;AF=0.500;AN=2;DB;DP=478;set=Intersection	GT:AD:AF:DP	0/1:233,242:0.51:475
chr20	58425413	rs2865768	C	T	5092.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr20	58567492	rs34866303	T	C	4467.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.612;ClippingRankSum=0.000;DB;DP=456;ExcessHet=3.0103;FS=1.745;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.91;ReadPosRankSum=-1.838;SOR=0.544;set=HC	GT:AD:AF:DP	0/1:230,221:0.49:451
chr20	58569599	rs145315522	C	T	1649.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:79,77:0.49:156
chr20	58644995	rs6071100	T	C	2112.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:80,92:0.53:172
chr20	59091946	rs6064934	A	C	821.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr20	59431577	.	TACACACAC	T,TAC	3062.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.962;ClippingRankSum=0.000;DP=185;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.18;MQRankSum=0.270;QD=36.03;ReadPosRankSum=1.734;SOR=0.478;set=HC	GT:AD:AF:DP	1/2:1,40,44:0.47,0.52:85
chr20	59827498	.	TCGG	T	2367.73	.	AC=2;AF=1.00;AN=2;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr20	59827664	rs111910331	C	G	388.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:28,21:0.43:49
chr20	59908320	rs72064063	TACAC	T	2623.73	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:67,78:0.54:145
chr20	59908349	rs11086735	A	G	1529.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:77,70:0.48:147
chr20	60145672	rs2252560	T	G	1698.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:72,82:0.53:154
chr20	60293919	rs2892179	C	A	7546.77	.	AC=1;AF=0.500;AN=2;DB;DP=818;set=Intersection	GT:AD:AF:DP	0/1:417,375:0.47:792
chr20	60294279	rs4925275	A	G	2568.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:83,122:0.60:205
chr20	60419937	.	A	G	1273.77	.	AC=1;AF=0.500;AN=2;DP=102;set=Intersection	GT:AD:AF:DP	0/1:49,52:0.51:101
chr20	60485327	rs1776237	C	T	1345.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr20	60485627	rs2427240	C	T	7107.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr20	60508197	rs142208243	C	T	2134.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:72,93:0.56:165
chr20	60572663	rs2296081	C	A	8007.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr20	60573983	rs2296082	A	G	1452.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr20	60574216	rs2296083	C	T	5463.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr20	60582540	rs2281735	T	A	4138.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr20	60584328	rs2296087	T	A	1836.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr20	60639883	rs1886009	T	C	205.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.86;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr20	60640305	rs200074661	TGCCAGG	T	136.87	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=64.48;QD=27.37;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr20	60699938	rs11480126	C	CT	294.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.285;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.03;ReadPosRankSum=1.702;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:3,18:0.86:21
chr20	60704117	rs4925345	A	G	3400.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr20	60708216	rs6089657	G	A	2072.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr20	60709530	rs11477488	CT	C	401.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.847;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=0.736;QD=8.37;ReadPosRankSum=1.953;SOR=1.670;set=HC	GT:AD:AF:DP	0/1:12,36:0.75:48
chr20	60712174	rs3078903	CAGCAGT	C	1537.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr20	60712284	rs2057169	G	A	3825.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr20	60712347	rs2057168	G	A	10757.77	.	AC=2;AF=1.00;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	1/1:0,372:1.00:372
chr20	60712511	rs2281740	A	G	22458.77	.	AC=2;AF=1.00;AN=2;DB;DP=824;set=Intersection	GT:AD:AF:DP	1/1:0,816:1.00:816
chr20	60713311	rs7076	G	A	9833.77	.	AC=2;AF=1.00;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	1/1:2,368:0.99:370
chr20	60713332	rs1135961	A	G	8775.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr20	60718420	rs3746651	C	T	2794.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr20	60739353	rs146750123	GGGGCAAGGA	G	3106.73	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr20	60749664	rs115792477	G	A	5343.77	.	AC=1;AF=0.500;AN=2;DB;DP=526;set=Intersection	GT:AD:AF:DP	0/1:262,263:0.50:525
chr20	60768573	rs41284984	C	T	2422.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:95,114:0.55:209
chr20	60773041	rs6062140	G	C	6810.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr20	60773684	rs4925355	C	T	5626.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr20	60774035	rs6142990	A	G	9208.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:6,331:0.98:337
chr20	60776182	rs1054885	G	A	1456.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr20	60791404	rs3787429	C	T	3577.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:76,105:0.58:181
chr20	60791422	rs3787430	C	T	3105.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:58,79:0.58:137
chr20	60792029	rs1739583	G	A	3894.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr20	60808026	rs6089695	C	T	15672.77	.	AC=2;AF=1.00;AN=2;DB;DP=586;set=Intersection	GT:AD:AF:DP	1/1:3,574:0.99:577
chr20	60831300	rs6089706	G	A	2391.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr20	60848248	rs6061476	G	T	897.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr20	60848348	rs2236526	C	T	3983.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr20	60855083	.	C	T	3690.77	.	AC=1;AF=0.500;AN=2;DP=377;set=Intersection	GT:AD:AF:DP	0/1:189,180:0.49:369
chr20	60857034	rs2274938	G	A	3235.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr20	60859381	rs4925225	A	G	4394.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr20	60859430	.	ATT	A,AT	969.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.975;ClippingRankSum=0.000;DP=103;ExcessHet=3.0103;FS=4.421;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.31;MQRankSum=0.787;QD=11.97;ReadPosRankSum=0.489;SOR=1.195;set=HC	GT:AD:AF:DP	1/2:13,24,44:0.30,0.54:81
chr20	60859486	rs4925226	A	G	1669.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr20	60864390	rs3746657	C	T	3967.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr20	60881330	rs2427273	G	A	14072.77	.	AC=2;AF=1.00;AN=2;DB;DP=541;set=Intersection	GT:AD:AF:DP	1/1:0,538:1.00:538
chr20	60881643	rs2427274	T	C	2374.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr20	60881780	rs2427275	T	C	6857.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr20	60882277	rs2427277	C	T	673.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr20	60882888	rs2427278	A	G	9257.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr20	60884651	rs6143020	T	G	143.90	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.78;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr20	60884695	.	T	TGGGGGGGTGGGAGGGGGTGGG	841.73	.	AC=2;AF=1.00;AN=2;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=76.52;SOR=4.977;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr20	60885127	rs146292551	C	T	3985.77	.	AC=1;AF=0.500;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	0/1:180,188:0.51:368
chr20	60885142	rs2379129	C	A	11910.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,327:1.00:327
chr20	60885448	rs944897	A	G	9904.77	.	AC=2;AF=1.00;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	1/1:0,352:1.00:352
chr20	60886611	rs2297590	C	T	11733.77	.	AC=2;AF=1.00;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	1/1:0,429:1.00:429
chr20	60887581	rs944895	G	A	13774.77	.	AC=2;AF=1.00;AN=2;DB;DP=505;set=Intersection	GT:AD:AF:DP	1/1:0,498:1.00:498
chr20	60890375	rs6062210	C	T	1396.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr20	60891288	rs2065578	A	G	2777.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr20	60892116	rs2236521	G	A	1877.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr20	60892526	rs2427281	A	G	13083.77	.	AC=2;AF=1.00;AN=2;DB;DP=504;set=Intersection	GT:AD:AF:DP	1/1:0,503:1.00:503
chr20	60892692	rs6062216	C	T	3812.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr20	60893387	rs183361685	A	G	835.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.14;SOR=6.593;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr20	60893639	rs6089732	G	C	10711.77	.	AC=2;AF=1.00;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	1/1:2,406:1.00:408
chr20	60895738	rs6089346	A	G	7378.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr20	60897071	rs2274936	A	G	5927.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr20	60897487	rs2274934	C	T	6634.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr20	60898505	rs2379128	C	T	1510.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr20	60899206	rs2427283	C	T	5567.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr20	60900481	rs2427284	A	G	10091.77	.	AC=2;AF=1.00;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	1/1:0,360:1.00:360
chr20	60900579	rs2427285	C	A	16078.77	.	AC=2;AF=1.00;AN=2;DB;DP=594;set=Intersection	GT:AD:AF:DP	1/1:0,583:1.00:583
chr20	60902214	rs944894	G	A	1872.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr20	60902490	rs944892	C	T	30364.77	.	AC=2;AF=1.00;AN=2;DB;DP=1138;set=Intersection	GT:AD:AF:DP	1/1:0,1129:1.00:1129
chr20	60902544	rs944891	A	C	34897.77	.	AC=2;AF=1.00;AN=2;DB;DP=1277;set=Intersection	GT:AD:AF:DP	1/1:0,1268:1.00:1268
chr20	60902883	rs4925375	C	T	11158.77	.	AC=2;AF=1.00;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	1/1:0,413:1.00:413
chr20	60904421	rs3065756	GCAGCC	G	2997.73	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr20	60904853	rs2427286	T	C	9176.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:0,346:1.00:346
chr20	60905717	rs2095235	T	C	11499.77	.	AC=2;AF=1.00;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	1/1:0,441:1.00:441
chr20	60905878	rs3810548	A	G	4171.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr20	60906055	rs73613564	C	T	11763.77	.	AC=2;AF=1.00;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	1/1:0,437:1.00:437
chr20	60906269	rs35653162	C	T	397.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:32,16:0.33:48
chr20	60907446	rs2151513	T	C	3945.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr20	60907675	rs6142734	G	A	12517.77	.	AC=2;AF=1.00;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	1/1:0,467:1.00:467
chr20	60908882	rs12481057	G	A	2659.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr20	60908892	rs141833594	A	AGTGGG	3780.73	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr20	60908964	rs13044266	G	A	15689.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.06;QD=45.74;SOR=1.230;set=HC	GT:AD:AF:DP	1/1:0,343:1.00:343
chr20	60908969	rs13042941	T	C	15817.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.06;QD=43.70;SOR=1.172;set=HC	GT:AD:AF:DP	1/1:0,362:1.00:362
chr20	60909060	rs13038331	A	G	13666.77	.	AC=2;AF=1.00;AN=2;DB;DP=526;set=Intersection	GT:AD:AF:DP	1/1:0,518:1.00:518
chr20	60909466	rs2379127	G	A	1574.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr20	60909518	rs1105019	G	T	1170.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr20	60909809	.	C	CAGGGCTCAGGGCGAGGGCG	2062.73	.	AC=2;AF=1.00;AN=2;DP=62;set=Intersection	GT:AD:AF:DP	1/1:1,45:0.98:46
chr20	60909974	rs12625368	T	C	5535.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr20	60911958	rs2890083	G	A	24671.77	.	AC=2;AF=1.00;AN=2;DB;DP=982;set=Intersection	GT:AD:AF:DP	1/1:4,956:1.00:960
chr20	60912683	rs2427289	T	C	9000.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	1/1:0,335:1.00:335
chr20	60913495	rs2151512	T	C	7615.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr20	60917294	rs4925380	G	A	1126.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr20	60920624	rs4925385	A	G	2458.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr20	60920887	rs11204472	G	A	9242.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	1/1:0,343:1.00:343
chr20	60921044	rs4925386	T	C	5659.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr20	60921643	rs4925229	T	C	9922.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:0,343:1.00:343
chr20	60921701	rs4925387	A	G	15331.77	.	AC=2;AF=1.00;AN=2;DB;DP=583;set=Intersection	GT:AD:AF:DP	1/1:0,575:1.00:575
chr20	60921896	rs4925388	A	G	16440.77	.	AC=2;AF=1.00;AN=2;DB;DP=617;set=Intersection	GT:AD:AF:DP	1/1:2,608:1.00:610
chr20	60927349	rs483876	C	T	15569.77	.	AC=2;AF=1.00;AN=2;DB;DP=597;set=Intersection	GT:AD:AF:DP	1/1:2,589:1.00:591
chr20	60927412	rs624313	G	A	14844.77	.	AC=2;AF=1.00;AN=2;DB;DP=559;set=Intersection	GT:AD:AF:DP	1/1:4,555:0.99:559
chr20	60927482	rs482220	G	A	7428.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.93;SOR=1.317;set=HC	GT:AD:AF:DP	1/1:0,266:1.00:266
chr20	60927538	rs623834	C	T	4899.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr20	60927551	rs482010	A	G	2965.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:2,97:0.98:99
chr20	60937597	rs477859	A	G	6426.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:2,232:0.99:234
chr20	60963346	.	C	CT	249.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.201;ClippingRankSum=0.000;DP=396;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.66;ReadPosRankSum=0.831;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:312,64:0.17:376
chr20	60963494	rs6089356	C	T	10132.77	.	AC=2;AF=1.00;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	1/1:0,369:1.00:369
chr20	60966318	rs6089219	G	T	6756.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:1,232:1.00:233
chr20	60970034	rs149234266	C	T	2085.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.128;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.84;ReadPosRankSum=-0.313;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:106,106:0.50:212
chr20	60989365	rs3810553	C	T	1743.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:112,84:0.43:196
chr20	60990075	rs911078	T	G	899.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:29,41:0.59:70
chr20	60990170	rs911079	C	T	1385.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:57,69:0.55:126
chr20	60990606	rs3810554	A	C	1180.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:62,55:0.47:117
chr20	60991967	rs374200972	C	T	400.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:26,17:0.40:43
chr20	61039958	rs6061550	T	C	5695.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:2,219:0.99:221
chr20	61040453	rs6061243	C	G	3648.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:1,137:0.99:138
chr20	61040951	rs6587239	C	T	5008.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr20	61041653	rs6061244	G	C	1051.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:53,53:0.50:106
chr20	61041687	rs6121610	C	T	801.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:38,38:0.50:76
chr20	61048549	rs41305803	G	A	4961.77	.	AC=1;AF=0.500;AN=2;DB;DP=484;set=Intersection	GT:AD:AF:DP	0/1:241,235:0.49:476
chr20	61050379	rs6142775	T	G	2816.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:92,128:0.58:220
chr20	61143364	rs12625668	T	C	7258.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr20	61143487	rs3934574	T	C	23788.77	.	AC=2;AF=1.00;AN=2;DB;DP=886;set=Intersection	GT:AD:AF:DP	1/1:2,880:1.00:882
chr20	61143945	rs3934573	T	G	2924.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr20	61150928	rs12624794	A	G	1296.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:53,54:0.50:107
chr20	61162100	rs13040413	G	A	307.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:20,17:0.46:37
chr20	61162267	rs6062251	T	C	2265.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:121,111:0.48:232
chr20	61162423	rs6062250	T	C	2067.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:76,95:0.56:171
chr20	61167517	rs6143065	C	T	503.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:23,22:0.49:45
chr20	61167632	rs11483745	G	GTTT	1952.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.673;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=1.457;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=0.000;QD=8.80;ReadPosRankSum=1.131;SOR=0.547;set=HC	GT:AD:AF:DP	0/1:132,90:0.41:222
chr20	61273578	rs6089951	C	T	5777.77	.	AC=1;AF=0.500;AN=2;DB;DP=531;set=Intersection	GT:AD:AF:DP	0/1:253,275:0.52:528
chr20	61273717	rs6122141	G	C	831.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:49,41:0.46:90
chr20	61288038	rs1047099	G	A	16573.77	.	AC=2;AF=1.00;AN=2;DB;DP=609;set=Intersection	GT:AD:AF:DP	1/1:0,594:1.00:594
chr20	61288355	rs3195701	G	T	11051.77	.	AC=2;AF=1.00;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	1/1:2,398:0.99:400
chr20	61289958	rs2427369	G	A	4771.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr20	61292373	rs144381587	G	GAGCCCCC	1507.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr20	61326276	rs2427393	G	A	1210.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:58,50:0.46:108
chr20	61326380	rs2427394	C	T	12471.77	.	AC=2;AF=1.00;AN=2;DB;DP=466;set=Intersection	GT:AD:AF:DP	1/1:0,460:1.00:460
chr20	61326439	rs145607453	T	TCTGCACCTGCACCTGCAC	4221.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.968;ClippingRankSum=0.000;DB;DP=664;ExcessHet=3.0103;FS=1.118;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-1.203;QD=9.06;ReadPosRankSum=1.759;SOR=0.603;set=HC	GT:AD:AF:DP	0/1:273,193:0.41:466
chr20	61331678	rs4809531	C	A	7798.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr20	61340467	rs112730455	C	G	87.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:10,6:0.38:16
chr20	61341286	rs3746780	A	G	5792.77	.	AC=1;AF=0.500;AN=2;DB;DP=540;set=Intersection	GT:AD:AF:DP	0/1:274,262:0.49:536
chr20	61462004	.	A	AC	1459	.	AC=2;AF=1.00;AN=2;BRF=0.51;FR=1.0000;HP=10;HapScore=2;MGOF=25;MMLQ=25;MQ=55.87;NF=0;NR=23;PP=1459;QD=64.652173913;SC=ACAGTCCCCCACCCCCATGAC;SbPval=1.0;Source=Platypus;TC=36;TCF=0;TCR=36;TR=23;WE=61462050;WS=61461994;set=Platypus	GT:AD:AF:DP	1/1:13,23:0.64:36
chr20	61462011	.	TG	CC	1770	.	AC=2;AF=1.00;AN=2;BRF=0.51;FR=1.0000;HP=1;HapScore=2;MGOF=25;MMLQ=25;MQ=51.85;NF=0;NR=22;PP=1770;QD=82.8849034028;SC=CCCACCCCCATGACAGTCCCC;SbPval=1.0;Source=Platypus;TC=22;TCF=0;TCR=22;TR=22;WE=61462050;WS=61461994;set=Platypus	GT:AD:AF:DP	1/1:0,22:1.00:22
chr20	61467898	rs910152	G	C	8521.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr20	61468571	rs2294995	T	C	11130.77	.	AC=2;AF=1.00;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	1/1:2,418:1.00:420
chr20	61512185	rs41282984	G	C	5910.77	.	AC=1;AF=0.500;AN=2;DB;DP=580;set=Intersection	GT:AD:AF:DP	0/1:294,278:0.49:572
chr20	61512606	rs910148	T	C	12231.77	.	AC=2;AF=1.00;AN=2;DB;DP=444;set=Intersection	GT:AD:AF:DP	1/1:0,441:1.00:441
chr20	61513649	rs6011441	G	T	5757.77	.	AC=1;AF=0.500;AN=2;DB;DP=560;set=Intersection	GT:AD:AF:DP	0/1:274,276:0.50:550
chr20	61524133	rs2294998	C	T	6522.77	.	AC=1;AF=0.500;AN=2;DB;DP=829;set=Intersection	GT:AD:AF:DP	0/1:484,337:0.41:821
chr20	61524384	rs11362069	CT	C	342.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.669;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=3.006;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.59;ReadPosRankSum=-3.774;SOR=0.157;set=HC	GT:AD:AF:DP	0/1:25,27:0.52:52
chr20	61526001	rs750079	C	T	176.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:3,7:0.70:10
chr20	61526023	rs1883846	T	G	140.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:3,4:0.57:7
chr20	61527480	rs755740	T	C	5602.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr20	61527563	rs2013097	T	C	15342.77	.	AC=2;AF=1.00;AN=2;DB;DP=587;set=Intersection	GT:AD:AF:DP	1/1:0,584:1.00:584
chr20	61528074	rs910149	T	C	9749.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	1/1:0,354:1.00:354
chr20	61528271	rs1883847	C	T	11390.77	.	AC=2;AF=1.00;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	1/1:0,422:1.00:422
chr20	61528306	rs1883848	A	G	8146.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chr20	61538390	rs11479019	GC	G	2460.73	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr20	61541028	rs2295001	C	G	10437.77	.	AC=2;AF=1.00;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	1/1:0,370:1.00:370
chr20	61542001	rs2295002	C	T	1578.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr20	61575188	rs11300197	CT	C	550.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.31;QD=25.03;SOR=6.273;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr20	61577275	rs2427452	T	C	12557.77	.	AC=2;AF=1.00;AN=2;DB;DP=479;set=Intersection	GT:AD:AF:DP	1/1:0,476:1.00:476
chr20	61588159	rs2245341	A	G	2301.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:135,115:0.46:250
chr20	61588745	rs2427457	C	T	4012.77	.	AC=1;AF=0.500;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	0/1:172,195:0.53:367
chr20	61594493	rs3729555	G	A	6294.77	.	AC=1;AF=0.500;AN=2;DB;DP=583;set=Intersection	GT:AD:AF:DP	0/1:278,292:0.51:570
chr20	61594679	rs2427463	A	G	28462.77	.	AC=2;AF=1.00;AN=2;DB;DP=1050;set=Intersection	GT:AD:AF:DP	1/1:0,1032:1.00:1032
chr20	61595537	rs2427464	A	G	8053.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr20	61597946	rs5842409	CT	C	25638.73	.	AC=2;AF=1.00;AN=2;DB;DP=701;set=Intersection	GT:AD:AF:DP	1/1:0,691:1.00:691
chr20	61598093	rs45456594	C	T	4147.77	.	AC=1;AF=0.500;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	0/1:230,195:0.46:425
chr20	61598899	rs3746750	A	G	3316.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr20	61640934	rs11281878	A	AGCGGCTCCGC	1008.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr20	61711430	rs112147947	T	C	4542.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:2,168:0.99:170
chr20	61711484	rs62206577	T	C	8352.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:2,317:0.99:319
chr20	61711616	rs62206578	A	C	3748.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr20	61711642	rs112169283	CT	C	3323.73	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr20	61711648	rs76011895	C	T	3250.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr20	61847068	rs6090310	C	G	1668.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:76,72:0.49:148
chr20	61867619	rs11537908	C	G	3063.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:136,135:0.50:271
chr20	61869223	rs6062855	T	C	7609.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr20	61869607	rs6010878	C	A	5015.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr20	61869826	rs2273487	C	T	9048.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:3,319:0.99:322
chr20	61870075	rs744590	C	T	9217.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,325:1.00:325
chr20	61870141	rs113297757	G	A	5356.77	.	AC=1;AF=0.500;AN=2;DB;DP=480;set=Intersection	GT:AD:AF:DP	0/1:233,245:0.51:478
chr20	61870167	rs744591	C	A	20694.77	.	AC=2;AF=1.00;AN=2;DB;DP=757;set=Intersection	GT:AD:AF:DP	1/1:1,755:1.00:756
chr20	61870220	rs744592	T	C	29003.77	.	AC=2;AF=1.00;AN=2;DB;DP=1110;set=Intersection	GT:AD:AF:DP	1/1:6,1102:0.99:1108
chr20	61870465	rs1075557	A	G	6755.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr20	61870605	rs3215649	T	TG	8171.73	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr20	61870634	rs1075556	A	G	6445.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr20	61872905	rs1047826	A	G	9617.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:2,364:0.99:366
chr20	61873039	rs1047822	T	C	3707.77	.	AC=1;AF=0.500;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	0/1:160,175:0.52:335
chr20	61873080	rs1047819	T	A	2240.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:100,107:0.52:207
chr20	61874108	rs146400372	T	C	1473.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.397;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=0.679;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.08;ReadPosRankSum=-0.652;SOR=0.790;set=HC	GT:AD:AF:DP	0/1:57,65:0.53:122
chr20	61875344	rs61741774	C	T	5610.77	.	AC=1;AF=0.500;AN=2;DB;DP=524;set=Intersection	GT:AD:AF:DP	0/1:256,262:0.51:518
chr20	61875497	rs2236186	A	C	2297.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:147,118:0.45:265
chr20	61878632	rs2236193	G	A	1306.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:42,54:0.56:96
chr20	61878649	rs4809512	T	G	1953.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:50,72:0.59:122
chr20	61878950	rs872808	A	C	4759.77	.	AC=1;AF=0.500;AN=2;DB;DP=527;set=Intersection	GT:AD:AF:DP	0/1:297,221:0.43:518
chr20	61880169	rs1129659	T	G	7694.77	.	AC=1;AF=0.500;AN=2;DB;DP=779;set=Intersection	GT:AD:AF:DP	0/1:400,372:0.48:772
chr20	61880274	rs2273497	A	G	9599.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:0,344:1.00:344
chr20	61881296	rs927081	A	G	10448.77	.	AC=2;AF=1.00;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	1/1:0,405:1.00:405
chr20	61881559	rs2295535	G	A	334.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:15,15:0.50:30
chr20	61885452	rs34203226	G	T	1397.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:57,68:0.54:125
chr20	61910551	.	C	CT	52.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.966;ClippingRankSum=0.000;DP=48;ExcessHet=3.0103;FS=3.588;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.32;ReadPosRankSum=-0.544;SOR=1.514;set=HC	GT:AD:AF:DP	0/1:27,13:0.33:40
chr20	61916379	rs13042357	C	T	3238.77	.	AC=1;AF=0.500;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	0/1:233,157:0.40:390
chr20	61917241	rs6090342	A	G	1388.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:79,57:0.42:136
chr20	61918164	rs6062431	C	G	2791.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:134,137:0.51:271
chr20	61941747	rs4809287	A	G	3656.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:162,177:0.52:339
chr20	61944259	.	G	A	1511.77	.	AC=1;AF=0.500;AN=2;DP=171;set=Intersection	GT:AD:AF:DP	0/1:95,73:0.43:168
chr20	61946692	rs6090357	C	T	3653.77	.	AC=1;AF=0.500;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:139,176:0.56:315
chr20	61951326	rs11478836	CT	C	1491.73	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:38,56:0.60:94
chr20	61951489	rs6089881	G	C	1192.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:71,58:0.45:129
chr20	61951789	rs6062891	C	T	1500.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:61,70:0.53:131
chr20	61952490	rs4809533	A	G	2083.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:113,101:0.47:214
chr20	61953365	rs1884821	T	C	1820.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:92,89:0.49:181
chr20	61956782	rs2314251	T	C	3902.77	.	AC=1;AF=0.500;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	0/1:187,194:0.51:381
chr20	61960762	rs5842416	CTG	C	3235.73	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:88,90:0.51:178
chr20	61980994	rs45442394	G	A	2004.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:123,100:0.45:223
chr20	61981104	rs1044397	C	T	2615.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:130,127:0.49:257
chr20	61981134	rs1044396	G	A	2231.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:126,113:0.47:239
chr20	61981536	rs2229960	A	G	1500.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:114,79:0.41:193
chr20	61981554	rs2229959	C	A	1882.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:129,91:0.41:220
chr20	61982085	rs1044394	A	G	6372.77	.	AC=1;AF=0.500;AN=2;DB;DP=716;set=Intersection	GT:AD:AF:DP	0/1:395,315:0.44:710
chr20	61982124	rs1044393	A	G	7883.77	.	AC=1;AF=0.500;AN=2;DB;DP=880;set=Intersection	GT:AD:AF:DP	0/1:472,394:0.45:866
chr20	61982496	.	T	C	234	.	AC=1;AF=0.500;AN=2;BRF=0.46;FR=0.5000;HP=2;HapScore=2;MGOF=23;MMLQ=24;MQ=57.19;NF=3;NR=12;PP=234;QD=17.9180808365;SC=CACGCCCACATCCACGTCCAC;SbPval=0.44;Source=Platypus;TC=44;TCF=7;TCR=37;TR=15;WE=61982504;WS=61982486;set=Platypus	GT:AD:AF:DP	1/0:29,15:0.34:44
chr20	61990874	rs6090384	T	C	4961.77	.	AC=1;AF=0.500;AN=2;DB;DP=517;set=Intersection	GT:AD:AF:DP	0/1:262,250:0.49:512
chr20	61992285	rs11698563	A	C	242.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:11,13:0.54:24
chr20	61992547	rs6090387	G	C	417.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:12,20:0.62:32
chr20	62005458	rs35318934	G	C	7306.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr20	62038277	rs1801475	T	G	9346.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,326:1.00:326
chr20	62038378	rs1801471	A	T	1596.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:76,67:0.47:143
chr20	62038757	rs3746364	C	T	2124.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:114,105:0.48:219
chr20	62038810	rs3746363	G	C	879.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:49,43:0.47:92
chr20	62040022	rs2236197	T	C	2129.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:100,102:0.50:202
chr20	62046278	rs1801545	G	C	1508.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:74,74:0.50:148
chr20	62046496	rs112006486	C	CGACAGACA	19147.73	.	AC=2;AF=1.00;AN=2;DB;DP=491;set=Intersection	GT:AD:AF:DP	1/1:0,423:1.00:423
chr20	62046549	rs75305929	C	T	2526.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:159,122:0.43:281
chr20	62062576	rs118015498	G	A	1386.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:63,59:0.48:122
chr20	62074003	rs372494294	TCAC	T	1196.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.281;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=17.120;MLEAC=1;MLEAF=0.500;MQ=59.67;MQRankSum=-1.027;QD=12.73;ReadPosRankSum=-1.568;SOR=2.378;set=HC	GT:AD:AF:DP	0/1:59,35:0.37:94
chr20	62074009	.	CCACCAT	C	1391	.	AC=1;AF=0.500;AN=2;BRF=0.54;FR=0.5000;HP=1;HapScore=1;MGOF=26;MMLQ=26;MQ=50.5;NF=2;NR=22;PP=1391;QD=58.9583333333;SC=ACCATCACCACCACCATCACC;SbPval=0.59;Source=Platypus;TC=73;TCF=6;TCR=67;TR=24;WE=62074026;WS=62073988;set=Platypus	GT:AD:AF:DP	0/1:49,24:0.33:73
chr20	62074015	rs370394245	TCAC	T	1197.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.567;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=17.342;MLEAC=1;MLEAF=0.500;MQ=59.61;MQRankSum=-1.010;QD=12.88;ReadPosRankSum=-3.522;SOR=2.426;set=HC	GT:AD:AF:DP	0/1:58,35:0.38:93
chr20	62119615	rs2750402	A	G	1117.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr20	62119822	rs140125000	AC	A	1332.73	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:86,60:0.41:146
chr20	62120569	rs1757783	G	A	1288.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:74,62:0.46:136
chr20	62121702	rs310607	A	G	12842.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr20	62121726	rs310608	T	C	15492.77	.	AC=2;AF=1.00;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	1/1:0,390:1.00:390
chr20	62124459	rs12480745	G	T	435.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:27,19:0.41:46
chr20	62126185	rs310617	A	G	4329.77	.	AC=1;AF=0.500;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	0/1:204,208:0.50:412
chr20	62127121	rs310618	T	C	1438.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr20	62127521	rs310619	G	A	1064.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:32,41:0.56:73
chr20	62128895	rs113339369	G	A	2340.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:112,109:0.49:221
chr20	62153311	rs1139147	G	C	1045.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:65,45:0.41:110
chr20	62161418	rs374800	G	C	7067.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.209;ClippingRankSum=0.000;DB;DP=424;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.99;ReadPosRankSum=0.682;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:232,184:0.44:416
chr20	62161421	rs94991	G	A	7104.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.516;ClippingRankSum=0.000;DB;DP=438;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.52;ReadPosRankSum=0.539;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:240,190:0.44:430
chr20	62162340	rs191090	T	C	5071.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr20	62164169	rs59130722	GC	G	483.73	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:22,20:0.48:42
chr20	62165034	rs56338872	A	G	4178.77	.	AC=1;AF=0.500;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	0/1:253,204:0.45:457
chr20	62165065	rs6011881	A	G	3456.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:189,164:0.46:353
chr20	62165135	rs6011882	G	A	1716.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:66,74:0.53:140
chr20	62165202	rs6011883	G	C	580.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:18,25:0.58:43
chr20	62165803	rs11478465	GC	G	1110.73	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:54,32:0.37:86
chr20	62165821	rs6011884	C	T	1036.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:44,29:0.40:73
chr20	62172219	rs6122130	G	A	6725.77	.	AC=1;AF=0.500;AN=2;DB;DP=672;set=Intersection	GT:AD:AF:DP	0/1:339,328:0.49:667
chr20	62172283	rs8120713	G	A	10136.77	.	AC=1;AF=0.500;AN=2;DB;DP=900;set=Intersection	GT:AD:AF:DP	0/1:410,485:0.54:895
chr20	62172639	rs6011889	G	A	8424.77	.	AC=1;AF=0.500;AN=2;DB;DP=869;set=Intersection	GT:AD:AF:DP	0/1:455,408:0.47:863
chr20	62173029	rs310656	A	G	998.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr20	62173562	rs56130722	G	T	5514.77	.	AC=1;AF=0.500;AN=2;DB;DP=555;set=Intersection	GT:AD:AF:DP	0/1:283,266:0.48:549
chr20	62173703	rs6011892	G	A	7195.77	.	AC=1;AF=0.500;AN=2;DB;DP=669;set=Intersection	GT:AD:AF:DP	0/1:330,331:0.50:661
chr20	62173925	rs404613	T	G	3473.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.784;ClippingRankSum=0.000;DB;DP=329;ExcessHet=3.0103;FS=0.407;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.89;ReadPosRankSum=0.471;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:157,162:0.51:319
chr20	62174724	rs4809309	G	A	3772.77	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:154,184:0.54:338
chr20	62178555	rs35558836	T	C	1679.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:92,86:0.48:178
chr20	62187187	rs3746348	T	C	8915.77	.	AC=1;AF=0.500;AN=2;DB;DP=734;set=Intersection	GT:AD:AF:DP	0/1:326,399:0.55:725
chr20	62187439	rs734750	T	C	16423.77	.	AC=2;AF=1.00;AN=2;DB;DP=617;set=Intersection	GT:AD:AF:DP	1/1:0,613:1.00:613
chr20	62191321	rs3810477	A	G	2294.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:156,125:0.44:281
chr20	62192374	rs3810480	C	T	3823.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:170,156:0.48:326
chr20	62192768	rs79448470	C	T	5296.77	.	AC=1;AF=0.500;AN=2;DB;DP=470;set=Intersection	GT:AD:AF:DP	0/1:229,237:0.51:466
chr20	62193414	rs310629	A	G	10519.77	.	AC=2;AF=1.00;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	1/1:0,395:1.00:395
chr20	62193587	rs3810482	T	C	2277.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:96,105:0.52:201
chr20	62194030	rs3810483	G	C	3188.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:187,144:0.44:331
chr20	62194103	rs3810484	A	G	3202.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:136,152:0.53:288
chr20	62194128	rs3810485	G	A	3723.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:152,168:0.53:320
chr20	62195087	rs310630	A	G	5838.77	.	AC=1;AF=0.500;AN=2;DB;DP=659;set=Intersection	GT:AD:AF:DP	0/1:362,292:0.45:654
chr20	62195526	.	G	A	5327.77	.	AC=1;AF=0.500;AN=2;DP=575;set=Intersection	GT:AD:AF:DP	0/1:302,259:0.46:561
chr20	62196253	rs310631	C	A	5150.77	.	AC=1;AF=0.500;AN=2;DB;DP=484;set=Intersection	GT:AD:AF:DP	0/1:234,242:0.51:476
chr20	62196807	rs310632	T	C	17563.77	.	AC=2;AF=1.00;AN=2;DB;DP=647;set=Intersection	GT:AD:AF:DP	1/1:0,644:1.00:644
chr20	62196884	rs310633	A	G	14960.77	.	AC=2;AF=1.00;AN=2;DB;DP=558;set=Intersection	GT:AD:AF:DP	1/1:1,551:1.00:552
chr20	62197370	rs34830600	G	A	6825.77	.	AC=1;AF=0.500;AN=2;DB;DP=692;set=Intersection	GT:AD:AF:DP	0/1:348,335:0.49:683
chr20	62197619	rs45519633	C	T	982.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:18,39:0.68:57
chr20	62197905	rs310634	G	A	60.82	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=3.332;MLEAC=1;MLEAF=0.500;MQ=58.93;MQRankSum=-0.619;QD=7.60;ReadPosRankSum=1.150;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:2,6:0.75:8
chr20	62198236	rs415304	G	A	8543.77	.	AC=1;AF=0.500;AN=2;DB;DP=858;set=Intersection	GT:AD:AF:DP	0/1:429,416:0.49:845
chr20	62198348	rs438363	C	T	22625.77	.	AC=2;AF=1.00;AN=2;DB;DP=875;set=Intersection	GT:AD:AF:DP	1/1:0,864:1.00:864
chr20	62198526	.	G	A	4762.77	.	AC=1;AF=0.500;AN=2;DP=455;set=Intersection	GT:AD:AF:DP	0/1:225,227:0.50:452
chr20	62198662	rs367440	A	G	9780.77	.	AC=2;AF=1.00;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	1/1:2,363:0.99:365
chr20	62198686	rs3827025	G	A	4363.77	.	AC=1;AF=0.500;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	0/1:212,208:0.50:420
chr20	62198713	rs3810490	G	A	4340.77	.	AC=1;AF=0.500;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	0/1:230,210:0.48:440
chr20	62199100	rs422888	G	A	2354.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:114,107:0.48:221
chr20	62199126	rs3810491	C	G	1874.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:90,83:0.48:173
chr20	62200575	rs1741594	T	C	6912.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr20	62200738	rs6089924	G	A	4830.77	.	AC=1;AF=0.500;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	0/1:192,222:0.54:414
chr20	62200860	rs1757752	A	G	7169.77	.	AC=1;AF=0.500;AN=2;DB;DP=818;set=Intersection	GT:AD:AF:DP	0/1:446,365:0.45:811
chr20	62200929	rs6089925	G	A	5728.77	.	AC=1;AF=0.500;AN=2;DB;DP=550;set=Intersection	GT:AD:AF:DP	0/1:270,276:0.51:546
chr20	62201784	rs749079	T	C	3141.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:150,151:0.50:301
chr20	62202240	rs402211	A	G	3495.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:2,127:0.98:129
chr20	62202301	rs3746346	A	G	573.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:27,26:0.49:53
chr20	62221610	rs311496	T	C	11383.77	.	AC=2;AF=1.00;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	1/1:0,407:1.00:407
chr20	62221682	rs144783295	C	T	4364.77	.	AC=1;AF=0.500;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	0/1:173,199:0.53:372
chr20	62222211	rs1291170	T	G	700.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr20	62223371	rs311494	A	G	10793.77	.	AC=2;AF=1.00;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	1/1:1,409:1.00:410
chr20	62224083	rs2236502	C	T	2140.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr20	62227081	rs311489	A	G	12316.77	.	AC=2;AF=1.00;AN=2;DB;DP=474;set=Intersection	GT:AD:AF:DP	1/1:0,472:1.00:472
chr20	62229337	rs414897	G	A	1904.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:90,86:0.49:176
chr20	62234241	rs2145262	A	G	2465.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr20	62234273	rs766915	A	G	4210.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr20	62236076	rs77922905	C	T	2229.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:154,111:0.42:265
chr20	62236148	rs6090471	T	C	7385.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr20	62272658	rs2150910	T	C	866.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr20	62272682	rs6010609	C	G	284.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:18,14:0.44:32
chr20	62273435	rs186744824	G	A	1326.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:55,58:0.51:113
chr20	62275844	rs6010986	T	C	6565.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.17;SOR=2.066;set=HC	GT:AD:AF:DP	1/1:0,172:1.00:172
chr20	62275844	.	TC	CC,CT	1231	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.38;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=16;MMLQ=24;MQ=60.0;NF=36,20;NR=111,56;PP=973,1231;QD=6.85558647991;SC=CTTCCAGACGTCGGCACTGTC;SbPval=0.52;Source=Platypus;TC=147;TCF=36;TCR=111;TR=147,76;WE=62275853;WS=62275834;set=Platypus	GT:AF:DP	0/1:1.00:147
chr20	62275845	rs73135821	C	T	2148.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.715;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=1.426;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.26;ReadPosRankSum=-0.046;SOR=0.549;set=HC	GT:AD:AF:DP	0/1:69,93:0.57:162
chr20	62291008	rs6089953	A	G	4662.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr20	62292645	rs57695352	G	A	540.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:20,23:0.53:43
chr20	62293999	rs6010997	G	A	5778.77	.	AC=1;AF=0.500;AN=2;DB;DP=535;set=Intersection	GT:AD:AF:DP	0/1:266,266:0.50:532
chr20	62294015	rs2297434	C	T	5233.77	.	AC=1;AF=0.500;AN=2;DB;DP=483;set=Intersection	GT:AD:AF:DP	0/1:244,236:0.49:480
chr20	62298786	rs60072991	G	A	4193.77	.	AC=1;AF=0.500;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	0/1:213,199:0.48:412
chr20	62303794	rs6062300	G	A	488.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:29,23:0.44:52
chr20	62303803	rs6011019	G	T	675.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:28,31:0.53:59
chr20	62304060	rs7260740	GG	CT	1079.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;JOINED;set=Intersection	GT:AD:AF:DP	0/1:80,53:0.40:133
chr20	62305313	rs6011020	G	A	3941.77	.	AC=1;AF=0.500;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	0/1:211,196:0.48:407
chr20	62305406	rs6010616	T	C	1783.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:84,89:0.51:173
chr20	62309554	rs41309367	C	T	5452.77	.	AC=1;AF=0.500;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	0/1:190,265:0.58:455
chr20	62312299	rs2297440	T	C	1196.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr20	62319464	rs2738785	T	C	8960.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr20	62319561	rs2777940	C	G	6337.77	.	AC=1;AF=0.500;AN=2;DB;DP=639;set=Intersection	GT:AD:AF:DP	0/1:321,314:0.49:635
chr20	62319604	rs2777941	A	C	18036.77	.	AC=2;AF=1.00;AN=2;DB;DP=668;set=Intersection	GT:AD:AF:DP	1/1:0,665:1.00:665
chr20	62319840	rs377433741	C	T	1418.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:110,74:0.40:184
chr20	62320968	rs6062302	T	C	13842.77	.	AC=2;AF=1.00;AN=2;DB;DP=538;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.97;SOR=0.735;set=HC	GT:AD:AF:DP	1/1:0,533:1.00:533
chr20	62321073	rs143200080	C	T	2776.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:112,117:0.51:229
chr20	62321655	rs2236506	G	A	16513.77	.	AC=2;AF=1.00;AN=2;DB;DP=620;set=Intersection	GT:AD:AF:DP	1/1:0,602:1.00:602
chr20	62322288	rs3208007	T	C	2212.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr20	62322343	rs141976221	C	T	505.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:31,16:0.34:47
chr20	62322359	rs75757504	C	T	458.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:26,12:0.32:38
chr20	62323006	rs2236507	G	C	8908.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,327:1.00:327
chr20	62326110	rs3208008	A	C	8154.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr20	62328375	rs2738787	A	G	18605.77	.	AC=2;AF=1.00;AN=2;DB;DP=682;set=Intersection	GT:AD:AF:DP	1/1:0,674:1.00:674
chr20	62328721	rs41304826	A	G	5049.77	.	AC=1;AF=0.500;AN=2;DB;DP=491;set=Intersection	GT:AD:AF:DP	0/1:236,244:0.51:480
chr20	62328940	rs112115570	C	T	1610.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:76,70:0.48:146
chr20	62332025	rs35158527	C	T	2564.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:154,123:0.44:277
chr20	62332181	rs6011038	A	G	532.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:29,23:0.44:52
chr20	62332436	rs2738788	A	G	2385.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr20	62332638	rs374497353	A	AC	10463.73	.	AC=2;AF=1.00;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	1/1:2,381:0.99:383
chr20	62333350	.	GCC	G	381.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.322;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=3.183;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.35;ReadPosRankSum=-0.590;SOR=2.093;set=HC	GT:AD:AF:DP	0/1:6,16:0.73:22
chr20	62337622	rs1291211	A	G	2423.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr20	62340115	rs1291212	C	G	5283.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr20	62364885	rs6011068	T	A	18086.77	.	AC=2;AF=1.00;AN=2;DB;DP=682;set=Intersection	GT:AD:AF:DP	1/1:0,668:1.00:668
chr20	62367363	rs6011070	G	C	2141.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:164,112:0.41:276
chr20	62367377	rs2427535	A	G	3004.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:82,127:0.61:209
chr20	62369300	rs914559	C	G	12626.77	.	AC=2;AF=1.00;AN=2;DB;DP=484;set=Intersection	GT:AD:AF:DP	1/1:0,469:1.00:469
chr20	62369426	rs150938918	C	CGGGGCG	3921.73	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:6,143:0.96:149
chr20	62369895	rs1151624	A	G	8406.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr20	62370349	rs1056441	T	C	4080.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr20	62372706	rs4809221	G	A	1316.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:63,65:0.51:128
chr20	62372813	rs2427536	G	A	7915.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr20	62373665	rs35891783	ACTGG	A	4784.73	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:96,122:0.56:218
chr20	62373707	rs8957	G	T	6135.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr20	62374096	rs7996	C	T	2146.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:123,91:0.43:214
chr20	62374219	rs1151626	A	C	14355.77	.	AC=2;AF=1.00;AN=2;DB;DP=558;set=Intersection	GT:AD:AF:DP	1/1:3,543:0.99:546
chr20	62374441	rs6742	T	C	1325.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:67,58:0.46:125
chr20	62378349	rs5019252	C	T	4214.77	.	AC=1;AF=0.500;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	0/1:228,208:0.48:436
chr20	62378364	rs12625387	C	T	4884.77	.	AC=1;AF=0.500;AN=2;DB;DP=504;set=Intersection	GT:AD:AF:DP	0/1:260,241:0.48:501
chr20	62378725	.	T	A	161.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.559;ClippingRankSum=-0.000;DP=17;ExcessHet=3.0103;FS=2.187;MLEAC=1;MLEAF=0.500;MQ=57.41;MQRankSum=0.608;QD=10.78;ReadPosRankSum=-1.408;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:6,9:0.60:15
chr20	62488889	rs368004706	CT	C	297.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.265;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.475;QD=2.10;ReadPosRankSum=1.476;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:99,43:0.30:142
chr20	62489027	rs6011190	G	A	7982.77	.	AC=1;AF=0.500;AN=2;DB;DP=718;set=Intersection	GT:AD:AF:DP	0/1:334,377:0.53:711
chr20	62504840	.	C	CA	100.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.965;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;FS=6.787;MLEAC=1;MLEAF=0.500;MQ=60.53;MQRankSum=1.988;QD=2.96;ReadPosRankSum=0.584;SOR=0.119;set=HC	GT:AD:AF:DP	0/1:23,11:0.32:34
chr20	62517549	rs4809241	A	G	1017.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:30,44:0.59:74
chr20	62518729	rs3795156	A	G	664.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:37,32:0.46:69
chr20	62518766	rs3795157	C	T	1386.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:63,59:0.48:122
chr20	62520671	rs6062569	T	C	2646.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.415;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=1.206;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.87;ReadPosRankSum=1.332;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:105,73:0.41:178
chr20	62520674	rs6010690	G	T	2652.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.780;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=1.221;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.51;ReadPosRankSum=1.133;SOR=0.798;set=HC	GT:AD:AF:DP	0/1:99,72:0.42:171
chr20	62559964	rs817362	G	A	2276.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr20	62571417	rs35264801	AG	A	784.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.654;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.36;MQRankSum=0.839;QD=7.69;ReadPosRankSum=-0.066;SOR=1.197;set=HC	GT:AD:AF:DP	0/1:44,58:0.57:102
chr20	62573064	rs817370	T	C	506.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:17,20:0.54:37
chr20	62576991	rs2252258	G	A	9587.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:0,353:1.00:353
chr20	62578077	rs111264888	A	AT	2288.73	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr20	62592801	rs139888064	AC	A	4616.73	.	AC=1;AF=0.500;AN=2;DB;DP=372;MQ=60.12;set=Intersection	GT:AD:AF:DP	0/1:185,160:0.46:345
chr20	62594836	rs817323	G	A	801.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:45,37:0.45:82
chr20	62594899	rs817324	G	A	1248.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:49,55:0.53:104
chr20	62595169	rs817325	A	G	19529.77	.	AC=2;AF=1.00;AN=2;DB;DP=725;set=Intersection	GT:AD:AF:DP	1/1:2,720:1.00:722
chr20	62595547	rs6062599	C	T	4339.77	.	AC=1;AF=0.500;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	0/1:156,207:0.57:363
chr20	62595990	rs817326	T	C	1575.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:70,77:0.52:147
chr20	62597433	.	G	A	465	.	AC=2;AF=1.00;AN=2;BRF=0.44;FR=1.0000;HP=2;HapScore=1;MGOF=50;MMLQ=24;MQ=56.68;NF=17;NR=1;PP=465;QD=27.7650673637;SC=CCTGACCTGGGACGAGCCCCC;SbPval=0.63;Source=Platypus;TC=18;TCF=17;TCR=1;TR=18;WE=62597441;WS=62597430;set=Platypus	GT:AD:AF:DP	1/1:0,18:1.00:18
chr20	62597455	.	T	C	1204	.	AC=2;AF=1.00;AN=2;BRF=0.46;FR=1.0000;HP=1;HapScore=1;MGOF=14;MMLQ=28;MQ=58.96;NF=35;NR=8;PP=1204;QD=28.8086328499;SC=TACCTTTTCTTACCACTGTTC;SbPval=0.55;Source=Platypus;TC=43;TCF=35;TCR=8;TR=43;WE=62597473;WS=62597445;set=Platypus	GT:AD:AF:DP	1/1:0,43:1.00:43
chr20	62597463	.	TTCC	T	2217	.	AC=2;AF=1.00;AN=2;BRF=0.46;FR=1.0000;HP=1;HapScore=1;MGOF=14;MMLQ=24;MQ=59.52;NF=31;NR=8;PP=2217;QD=57.6923076923;SC=CTTACCACTGTTCCTCCCCGA;SbPval=0.52;Source=Platypus;TC=40;TCF=32;TCR=8;TR=39;WE=62597473;WS=62597445;set=Platypus	GT:AD:AF:DP	1/1:1,39:0.97:40
chr20	62597666	rs45486695	C	T	5586.77	.	AC=1;AF=0.500;AN=2;DB;DP=600;set=Intersection	GT:AD:AF:DP	0/1:311,282:0.48:593
chr20	62597694	rs817329	T	G	20768.77	.	AC=2;AF=1.00;AN=2;DB;DP=743;set=Intersection	GT:AD:AF:DP	1/1:3,732:1.00:735
chr20	62597996	rs150966051	T	C	7530.77	.	AC=1;AF=0.500;AN=2;DB;DP=616;set=Intersection	GT:AD:AF:DP	0/1:258,351:0.58:609
chr20	62598815	rs817330	C	T	14231.77	.	AC=2;AF=1.00;AN=2;DB;DP=541;set=Intersection	GT:AD:AF:DP	1/1:5,531:0.99:536
chr20	62598907	rs112250780	G	A	4189.77	.	AC=1;AF=0.500;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	0/1:172,194:0.53:366
chr20	62599141	rs817331	C	T	4674.77	.	AC=1;AF=0.500;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	0/1:229,226:0.50:455
chr20	62606765	rs817341	C	T	1500.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:51,59:0.54:110
chr20	62607160	rs817343	C	T	2237.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.367;ClippingRankSum=0.000;DB;DP=242;ExcessHet=3.0103;FS=3.971;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.73;ReadPosRankSum=2.065;SOR=0.983;set=HC	GT:AD:AF:DP	0/1:117,113:0.49:230
chr20	62609670	rs817348	A	G	1260.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:70,62:0.47:132
chr20	62609766	rs817349	C	T	913.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:67,47:0.41:114
chr20	62612480	rs115265032	G	A	4033.77	.	AC=1;AF=0.500;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	0/1:164,186:0.53:350
chr20	62614448	rs34062309	A	G	2791.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:144,139:0.49:283
chr20	62626152	rs6011248	C	A	339.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:26,17:0.40:43
chr20	62632693	rs60353771	A	G	666.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:42,31:0.42:73
chr20	62647997	rs116679693	C	G	401.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:13,17:0.57:30
chr20	62648292	.	C	CT	66.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.416;ClippingRankSum=-0.000;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.39;MQRankSum=0.674;QD=3.34;ReadPosRankSum=-1.412;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:12,8:0.40:20
chr20	62659937	rs41278240	C	T	1834.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:79,82:0.51:161
chr20	62663136	rs7260907	A	C	779.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:47,33:0.41:80
chr20	62664353	rs114637353	G	A	3175.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:173,157:0.48:330
chr20	62669916	.	C	CCCGGG	73	.	AC=1;AF=0.500;AN=2;BRF=0.45;FR=0.5000;HP=2;HapScore=2;MGOF=8;MMLQ=21;MQ=60.0;NF=2;NR=1;PP=73;QD=31.0;SC=CGTCTCCCTTCCCGGGCCGGG;SbPval=0.61;Source=Platypus;TC=11;TCF=8;TCR=3;TR=3;WE=62669924;WS=62669906;set=Platypus	GT:AD:AF:DP	1/0:8,3:0.27:11
chr20	62670294	rs76063107	G	A	2507.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:107,118:0.52:225
chr20	62679437	rs115220371	A	G	244.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:7,10:0.59:17
chr20	62679873	rs183578654	C	T	145.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:10,9:0.47:19
chr20	62697751	rs4809251	T	C	5097.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.14;SOR=0.881;set=HC	GT:AD:AF:DP	1/1:0,195:1.00:195
chr20	62714783	rs6010717	C	G	3266.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:166,150:0.47:316
chr20	62715089	rs4337532	G	A	1813.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:83,85:0.51:168
chr20	62715548	rs4431000	C	A	388.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:23,20:0.47:43
chr20	62737028	rs186068328	G	A	180.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.366;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.35;MQRankSum=-0.000;QD=25.82;ReadPosRankSum=-0.000;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:1,6:0.86:7
chr20	62737039	.	G	C	174.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.366;ClippingRankSum=-0.000;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.68;MQRankSum=-0.000;QD=21.85;ReadPosRankSum=0.180;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:2,6:0.75:8
chr20	62737043	.	G	A	221.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.200;ClippingRankSum=-0.000;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=0.660;QD=20.16;ReadPosRankSum=0.886;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:3,8:0.73:11
chr20	62737046	.	G	A	170.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.682;ClippingRankSum=-0.000;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=-0.000;QD=17.08;ReadPosRankSum=1.133;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:4,6:0.60:10
chr20	62737318	rs13036542	G	A	3789.77	.	AC=1;AF=0.500;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	0/1:197,180:0.48:377
chr20	62830290	rs2295450	C	A	3158.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:169,153:0.48:322
chr20	62836382	rs2273443	C	T	3840.77	.	AC=1;AF=0.500;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	0/1:212,189:0.47:401
chr20	62838866	rs76118085	G	C	1583.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:48,58:0.55:106
chr20	62838933	rs6090069	T	C	5269.77	.	AC=1;AF=0.500;AN=2;DB;DP=474;set=Intersection	GT:AD:AF:DP	0/1:231,237:0.51:468
chr20	62839888	rs59834539	T	C	873.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:32,41:0.56:73
chr20	62843542	.	GGGGGCCAGGGTGGGGGCCGTGGT	G	2966	.	AC=1;AF=0.500;AN=2;BRF=0.65;FR=0.5000;HP=4;HapScore=2;MGOF=25;MMLQ=23;MQ=59.68;NF=18;NR=20;PP=2966;QD=20;SC=GGGCCGTGGTGGGGGCCAGGG;SbPval=0.51;Source=Platypus;TC=81;TCF=37;TCR=44;TR=38;WE=62843572;WS=62843532;set=Platypus	GT:AD:AF:DP	0/1:43,38:0.47:81
chr20	62850358	rs41279348	C	T	2260.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:84,103:0.55:187
chr20	62858693	rs2273446	C	G	1904.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:70,84:0.55:154
chr20	62896665	rs17878941	G	A	589.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:26,28:0.52:54
chr20	62903535	rs11906201	T	C	6559.77	.	AC=1;AF=0.500;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	0/1:214,171:0.44:385
chr20	62903550	rs11905831	A	G	7246.77	.	AC=1;AF=0.500;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	0/1:253,211:0.45:464
chr20	62903729	rs11907696	C	T	1898.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:74,85:0.53:159
chr20	62904542	rs6062361	A	G	1969.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr20	62905090	rs148085913	T	TTTC	154.73	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:6,5:0.45:11
chr20	62959363	rs111569474	G	C	270.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:38,16:0.30:54
chr21	9825735	rs371225382	T	C	151.84	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=38.57;QD=25.31;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr21	9825790	.	C	CT	901.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.596;ClippingRankSum=0.000;DP=241;ExcessHet=3.0103;FS=6.200;MLEAC=1;MLEAF=0.500;MQ=45.10;MQRankSum=-2.257;QD=3.74;ReadPosRankSum=-0.505;SOR=1.312;set=HC	GT:AD:AF:DP	0/1:196,45:0.19:241
chr21	9825794	.	G	A	648.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.397;ClippingRankSum=0.000;DP=289;ExcessHet=3.0103;FS=15.583;MLEAC=1;MLEAF=0.500;MQ=45.31;MQRankSum=-1.122;QD=2.24;ReadPosRankSum=1.579;SOR=1.801;set=HC	GT:AD:AF:DP	0/1:230,59:0.20:289
chr21	9825838	.	T	TGCG	4905.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-13.310;ClippingRankSum=0.000;DP=872;ExcessHet=3.0103;FS=35.809;MLEAC=1;MLEAF=0.500;MQ=52.42;MQRankSum=-11.716;QD=6.16;ReadPosRankSum=6.538;SOR=0.059;set=HC	GT:AD:AF:DP	0/1:630,167:0.21:797
chr21	9825966	.	A	C	95969.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.801;ClippingRankSum=0.000;DP=5602;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.81;MQRankSum=-14.552;QD=17.21;ReadPosRankSum=3.265;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:1190,4388:0.79:5578
chr21	9826301	rs374753985	T	C	114366.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.085;ClippingRankSum=0.000;DB;DP=4478;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.12;MQRankSum=-0.931;QD=26.05;ReadPosRankSum=3.155;SOR=0.703;set=HC	GT:AD:AF:DP	1/1:87,4303:0.98:4390
chr21	9907126	.	G	A	165.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.635;ClippingRankSum=0.000;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=39.63;MQRankSum=0.879;QD=2.86;ReadPosRankSum=0.765;SOR=0.061;set=HC	GT:AD:AF:DP	0/1:47,11:0.19:58
chr21	9907198	.	C	T	967.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.696;ClippingRankSum=0.000;DP=389;ExcessHet=3.0103;FS=2.930;MLEAC=1;MLEAF=0.500;MQ=43.61;MQRankSum=-2.353;QD=2.49;ReadPosRankSum=-0.272;SOR=1.016;set=HC	GT:AD:AF:DP	0/1:318,71:0.18:389
chr21	9907222	.	T	C	7991.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.459;ClippingRankSum=0.000;DP=730;ExcessHet=3.0103;FS=6.103;MLEAC=1;MLEAF=0.500;MQ=48.04;MQRankSum=-8.750;QD=11.04;ReadPosRankSum=0.400;SOR=1.111;set=HC	GT:AD:AF:DP	0/1:412,312:0.43:724
chr21	9907271	.	A	G	15595.77	.	AC=1;AF=0.500;AN=2;DP=1517;set=Intersection	GT:AD:AF:DP	0/1:785,730:0.48:1515
chr21	9907345	.	C	T	20881.77	.	AC=1;AF=0.500;AN=2;DP=2042;set=Intersection	GT:AD:AF:DP	0/1:1035,1006:0.49:2041
chr21	9907375	rs146622385	T	C	30044.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.083;ClippingRankSum=0.000;DB;DP=1651;ExcessHet=3.0103;FS=0.523;MLEAC=1;MLEAF=0.500;MQ=54.59;MQRankSum=-17.870;QD=18.20;ReadPosRankSum=-0.741;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:834,817:0.49:1651
chr21	9907384	rs140139768	G	A	28744.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.795;ClippingRankSum=0.000;DB;DP=1516;ExcessHet=3.0103;FS=0.528;MLEAC=1;MLEAF=0.500;MQ=54.41;MQRankSum=-15.416;QD=18.96;ReadPosRankSum=-0.063;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:772,744:0.49:1516
chr21	9907397	rs150294462	C	T	13610.77	.	AC=1;AF=0.500;AN=2;DB;DP=1297;set=Intersection	GT:AD:AF:DP	0/1:657,638:0.49:1295
chr21	9907416	.	C	T	10985.77	.	AC=1;AF=0.500;AN=2;DP=1050;set=Intersection	GT:AD:AF:DP	0/1:521,527:0.50:1048
chr21	9907503	.	C	A	3059.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-11.223;ClippingRankSum=0.000;DP=210;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=39.83;MQRankSum=1.232;QD=14.57;ReadPosRankSum=0.439;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:101,109:0.52:210
chr21	9907592	.	T	C	585.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.111;ClippingRankSum=0.000;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=41.29;MQRankSum=-1.581;QD=10.65;ReadPosRankSum=-0.708;SOR=1.079;set=HC	GT:AD:AF:DP	0/1:33,22:0.40:55
chr21	10793771	rs200837359	A	G	735.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.450;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=3.543;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=0.851;QD=8.18;ReadPosRankSum=3.189;SOR=1.568;set=HC	GT:AD:AF:DP	0/1:67,23:0.26:90
chr21	10793776	rs368569117	GGAGTT	G	1661.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.969;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=-1.511;QD=16.79;ReadPosRankSum=-2.714;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:53,46:0.46:99
chr21	10793781	rs113770789	T	G	921.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:72,27:0.27:99
chr21	10793789	.	GCAGAATGGAA	G	882.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.082;ClippingRankSum=0.000;DP=138;ExcessHet=3.0103;FS=8.821;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=0.930;QD=6.40;ReadPosRankSum=1.751;SOR=1.739;set=HC	GT:AD:AF:DP	0/1:108,30:0.22:138
chr21	10793822	rs143361187	G	T	1473.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.061;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=13.708;MLEAC=1;MLEAF=0.500;MQ=59.79;MQRankSum=1.344;QD=7.56;ReadPosRankSum=-0.125;SOR=1.749;set=HC	GT:AD:AF:DP	0/1:151,44:0.23:195
chr21	10793825	rs139250106	T	A	1407.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.445;ClippingRankSum=0.000;DB;DP=203;ExcessHet=3.0103;FS=9.763;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=1.361;QD=7.04;ReadPosRankSum=-0.332;SOR=1.515;set=HC	GT:AD:AF:DP	0/1:154,46:0.23:200
chr21	10793860	.	T	TGG	3602.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.126;ClippingRankSum=0.000;DP=396;ExcessHet=3.0103;FS=2.577;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=-4.314;QD=11.15;ReadPosRankSum=-2.257;SOR=0.540;set=HC	GT:AD:AF:DP	0/1:216,107:0.33:323
chr21	10793861	rs28362110	A	G,AATGGAATGGAATGGAGTG	9442.73	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;BaseQRankSum=1.901;ClippingRankSum=0.000;DB;DP=406;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.79;MQRankSum=-1.959;QD=28.88;ReadPosRankSum=0.565;SOR=0.712;set=HC	GT:AD:AF:DP	1/2:89,127,111:0.39,0.34:327
chr21	10793885	rs200167075	A	T	4598.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.389;ClippingRankSum=0.000;DB;DP=536;ExcessHet=3.0103;FS=0.597;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=1.976;QD=8.66;ReadPosRankSum=-0.509;SOR=0.786;set=HC	GT:AD:AF:DP	0/1:394,137:0.26:531
chr21	10793891	rs28490105	T	G	17065.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.924;ClippingRankSum=0.000;DB;DP=587;ExcessHet=3.0103;FS=0.675;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=-1.615;QD=29.37;ReadPosRankSum=-2.783;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:110,471:0.81:581
chr21	10793906	rs146787155	G	C	1576.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.708;ClippingRankSum=0.000;DB;DP=553;ExcessHet=3.0103;FS=6.965;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=1.240;QD=2.87;ReadPosRankSum=1.853;SOR=1.288;set=HC	GT:AD:AF:DP	0/1:477,72:0.13:549
chr21	10793912	rs200243265	A	G	1526.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.189;ClippingRankSum=0.000;DB;DP=551;ExcessHet=3.0103;FS=7.022;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=0.954;QD=2.80;ReadPosRankSum=0.982;SOR=1.230;set=HC	GT:AD:AF:DP	0/1:475,71:0.13:546
chr21	10793925	rs28641787	T	A	956.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.304;ClippingRankSum=0.000;DB;DP=538;ExcessHet=3.0103;FS=1.481;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=-2.102;QD=1.80;ReadPosRankSum=-0.168;SOR=0.861;set=HC	GT:AD:AF:DP	0/1:435,98:0.18:533
chr21	10793946	.	C	CGAATAGAATGGACTT	2954	.	AC=1;AF=0.500;AN=2;BRF=0.61;FR=0.5000;HP=1;HapScore=1;MGOF=92;MMLQ=24;MQ=59.75;NF=9;NR=59;PP=2954;QD=20;SC=GGAATGGAGTCGAATAGAATG;SbPval=0.29;Source=Platypus;TC=192;TCF=20;TCR=172;TR=68;WE=10793954;WS=10793936;set=Platypus	GT:AD:AF:DP	0/1:124,68:0.35:192
chr21	10793961	.	T	TGAATGGAATGGACTC	4742.73	.	AC=1;AF=0.500;AN=2;DP=375;set=Intersection	GT:AD:AF:DP	0/1:104,121:0.54:225
chr21	10794022	rs28971978	A	G	2295.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:22,79:0.78:101
chr21	10794047	rs28970391	G	A	828.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.728;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.35;ReadPosRankSum=0.342;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:28,26:0.48:54
chr21	10794051	rs200584440	T	C	493.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.759;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=3.918;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.68;ReadPosRankSum=1.894;SOR=0.217;set=HC	GT:AD:AF:DP	0/1:36,15:0.29:51
chr21	10794052	rs74672900	G	A	493.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.042;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=3.918;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.68;ReadPosRankSum=1.894;SOR=0.217;set=HC	GT:AD:AF:DP	0/1:36,15:0.29:51
chr21	10862599	rs3883945	C	T	7695.77	.	AC=1;AF=0.500;AN=2;DB;DP=730;set=Intersection	GT:AD:AF:DP	0/1:367,363:0.50:730
chr21	10862618	rs3916251	T	C	21631.77	.	AC=1;AF=0.500;AN=2;DB;DP=822;set=Intersection	GT:AD:AF:DP	0/1:168,654:0.80:822
chr21	10862846	rs3916645	A	T	35917.77	.	AC=2;AF=1.00;AN=2;DB;DP=1072;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.34;QD=33.60;SOR=1.097;set=HC	GT:AD:AF:DP	1/1:0,1069:1.00:1069
chr21	10862846	.	ATCACCAG	TTCACCAA,TTCACCAG	2962	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.43;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=16;MMLQ=28;MQ=57.39;NF=145,480;NR=100,307;PP=2944,2962;QD=20;SC=TGGATACACCATCACCAGCTA;SbPval=0.46;Source=Platypus;TC=794;TCF=481;TCR=313;TR=245,787;WE=10862861;WS=10862836;set=Platypus	GT:AF:DP	0/1:0.31:794
chr21	10862853	rs1961808	G	A	6318.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.465;ClippingRankSum=0.000;DB;DP=1134;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.39;MQRankSum=-6.994;QD=5.59;ReadPosRankSum=2.261;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:786,345:0.31:1131
chr21	10862874	rs1807747	A	G	20994.77	.	AC=1;AF=0.500;AN=2;DB;DP=1243;set=Intersection	GT:AD:AF:DP	0/1:528,712:0.57:1240
chr21	10862947	rs3883944	G	A	19330.77	.	AC=1;AF=0.500;AN=2;DB;DP=1632;set=Intersection	GT:AD:AF:DP	0/1:741,879:0.54:1620
chr21	10863087	rs28521368	T	G	29678.77	.	AC=2;AF=1.00;AN=2;DB;DP=1086;set=Intersection	GT:AD:AF:DP	1/1:0,1081:1.00:1081
chr21	10863155	rs28501310	G	T	1217.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.926;ClippingRankSum=0.000;DB;DP=473;ExcessHet=3.0103;FS=2.570;MLEAC=1;MLEAF=0.500;MQ=50.30;MQRankSum=-1.875;QD=2.57;ReadPosRankSum=-0.522;SOR=0.960;set=HC	GT:AD:AF:DP	0/1:382,91:0.19:473
chr21	10906989	rs210498	C	T	4336.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.393;ClippingRankSum=0.000;DB;DP=1142;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.000;QD=3.83;ReadPosRankSum=2.368;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:846,285:0.25:1131
chr21	10908767	rs4913632	C	T	474.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.659;ClippingRankSum=0.000;DB;DP=225;ExcessHet=3.0103;FS=1.381;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.15;ReadPosRankSum=-0.772;SOR=0.822;set=HC	GT:AD:AF:DP	0/1:179,42:0.19:221
chr21	10910253	rs1828001	G	T	4153.77	.	AC=1;AF=0.500;AN=2;DB;DP=578;set=Intersection	GT:AD:AF:DP	0/1:361,212:0.37:573
chr21	10910291	rs150480	C	T	13921.77	.	AC=1;AF=0.500;AN=2;DB;DP=872;set=Intersection	GT:AD:AF:DP	0/1:253,614:0.71:867
chr21	10910311	rs9996	T	G	16637.77	.	AC=1;AF=0.500;AN=2;DB;DP=1023;set=Intersection	GT:AD:AF:DP	0/1:307,712:0.70:1019
chr21	10910347	rs150482	A	G	31749.77	.	AC=2;AF=1.00;AN=2;DB;DP=1090;set=Intersection	GT:AD:AF:DP	1/1:0,1083:1.00:1083
chr21	10914285	rs62211195	G	A	439.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.268;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=3.060;MLEAC=1;MLEAF=0.500;MQ=59.72;MQRankSum=-3.468;QD=2.71;ReadPosRankSum=-0.483;SOR=1.065;set=HC	GT:AD:AF:DP	0/1:131,31:0.19:162
chr21	10916226	rs61365894	A	G	76.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.543;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.19;MQRankSum=-2.824;QD=0.63;ReadPosRankSum=-1.687;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:106,15:0.12:121
chr21	10916290	rs61249862	T	C	353.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.341;ClippingRankSum=0.000;DB;DP=290;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.41;MQRankSum=-0.842;QD=1.23;ReadPosRankSum=-0.666;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:240,47:0.16:287
chr21	10916293	rs150483	A	G	4949.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:104,191:0.65:295
chr21	10916322	rs210506	G	A	3062.77	.	AC=1;AF=0.500;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	0/1:219,159:0.42:378
chr21	10919969	rs4913680	C	G	344.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.160;ClippingRankSum=0.000;DB;DP=341;ExcessHet=3.0103;FS=3.593;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-3.547;QD=1.01;ReadPosRankSum=0.428;SOR=1.008;set=HC	GT:AD:AF:DP	0/1:290,51:0.15:341
chr21	10920041	rs4913553	C	T	373.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.330;ClippingRankSum=0.000;DB;DP=775;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.60;MQRankSum=-0.452;QD=0.49;ReadPosRankSum=0.868;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:666,101:0.13:767
chr21	10920067	rs4913681	T	C	423.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.167;ClippingRankSum=0.000;DB;DP=773;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.64;MQRankSum=-0.639;QD=0.55;ReadPosRankSum=-1.266;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:665,103:0.13:768
chr21	10920098	rs212146	T	C	17958.77	.	AC=2;AF=1.00;AN=2;DB;DP=618;set=Intersection	GT:AD:AF:DP	1/1:0,610:1.00:610
chr21	10920176	rs62211225	G	T	79.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.898;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=0.000;QD=0.40;ReadPosRankSum=-0.117;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:178,23:0.11:201
chr21	10935004	rs6582917	A	T	272.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.930;ClippingRankSum=0.000;DB;DP=363;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.38;MQRankSum=0.179;QD=0.75;ReadPosRankSum=0.178;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:308,54:0.15:362
chr21	10935116	rs625018	T	G	330.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:44,16:0.27:60
chr21	10941784	rs60630159	AT	A	830.73	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:106,60:0.36:166
chr21	10942036	rs2019999	T	A	694.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.410;ClippingRankSum=0.000;DB;DP=237;ExcessHet=3.0103;FS=3.244;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.03;ReadPosRankSum=-0.381;SOR=0.462;set=HC	GT:AD:AF:DP	0/1:179,50:0.22:229
chr21	10942601	rs1810855	C	T	677.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.142;ClippingRankSum=0.000;DB;DP=321;ExcessHet=3.0103;FS=3.648;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.000;QD=2.17;ReadPosRankSum=-0.342;SOR=1.066;set=HC	GT:AD:AF:DP	0/1:262,51:0.16:313
chr21	10942756	rs1810540	G	A	1367.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.120;ClippingRankSum=0.000;DB;DP=1429;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.68;MQRankSum=-0.705;QD=0.97;ReadPosRankSum=1.404;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:1201,210:0.15:1411
chr21	10942924	rs113444703	CCTT	C	780.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.271;ClippingRankSum=0.000;DB;DP=302;ExcessHet=3.0103;FS=0.640;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=4.777;QD=2.65;ReadPosRankSum=-0.263;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:256,39:0.13:295
chr21	10943003	rs1810856	C	T	254.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.140;ClippingRankSum=0.000;DB;DP=446;ExcessHet=3.0103;FS=1.731;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=-4.508;QD=0.58;ReadPosRankSum=-0.630;SOR=0.871;set=HC	GT:AD:AF:DP	0/1:385,57:0.13:442
chr21	10943038	rs2020014	C	A	239.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.114;ClippingRankSum=0.000;DB;DP=417;ExcessHet=3.0103;FS=4.052;MLEAC=1;MLEAF=0.500;MQ=59.83;MQRankSum=-7.107;QD=0.58;ReadPosRankSum=0.709;SOR=1.151;set=HC	GT:AD:AF:DP	0/1:363,51:0.12:414
chr21	10959806	rs212111	G	T	2702.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.081;ClippingRankSum=0.000;DB;DP=621;ExcessHet=3.0103;FS=0.589;MLEAC=1;MLEAF=0.500;MQ=59.64;MQRankSum=-4.601;QD=4.39;ReadPosRankSum=0.828;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:444,171:0.28:615
chr21	10959811	rs34027183	CA	C	2175.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.498;ClippingRankSum=0.000;DB;DP=588;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.47;MQRankSum=3.034;QD=4.10;ReadPosRankSum=-0.840;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:354,177:0.33:531
chr21	10959881	rs212112	G	A	932.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:133,51:0.28:184
chr21	10969894	.	A	AATGG	2592.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.297;ClippingRankSum=0.000;DP=232;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.20;MQRankSum=5.285;QD=15.91;ReadPosRankSum=0.877;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:89,74:0.45:163
chr21	10970003	rs469719	G	A	5471.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.774;ClippingRankSum=0.000;DB;DP=584;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.41;MQRankSum=-0.784;QD=9.47;ReadPosRankSum=2.950;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:414,164:0.28:578
chr21	10970017	rs468525	C	T	5566.77	.	AC=1;AF=0.500;AN=2;DB;DP=555;set=Intersection	GT:AD:AF:DP	0/1:387,164:0.30:551
chr21	10971210	rs469872	G	T	1037.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:114,54:0.32:168
chr21	10971453	rs1739180	T	C	540.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:61,25:0.29:86
chr21	10973787	rs469953	T	A	15624.77	.	AC=1;AF=0.500;AN=2;DB;DP=644;set=Intersection	GT:AD:AF:DP	0/1:210,416:0.66:626
chr21	10973798	rs469961	T	C	14557.77	.	AC=1;AF=0.500;AN=2;DB;DP=550;set=Intersection	GT:AD:AF:DP	0/1:182,355:0.66:537
chr21	10973815	rs469960	C	T	2711.77	.	AC=1;AF=0.500;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	0/1:270,137:0.34:407
chr21	10998165	rs364232	C	A	3157.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:80,133:0.62:213
chr21	11026874	rs6582728	G	T	529.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:24,20:0.45:44
chr21	11026921	.	T	C	495.77	.	AC=1;AF=0.500;AN=2;DP=130;set=Intersection	GT:AD:AF:DP	0/1:94,34:0.27:128
chr21	11027085	rs6421268	A	C	1984.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:116,95:0.45:211
chr21	11027129	rs4577378	C	T	907.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:59,43:0.42:102
chr21	11038649	rs28565510	C	A	1037.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.418;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=1.216;MLEAC=1;MLEAF=0.500;MQ=41.59;MQRankSum=-0.307;QD=6.65;ReadPosRankSum=-1.671;SOR=0.929;set=HC	GT:AD:AF:DP	0/1:109,47:0.30:156
chr21	11038722	rs62209718	C	A	12288.77	.	AC=1;AF=0.500;AN=2;DB;DP=747;set=Intersection	GT:AD:AF:DP	0/1:237,510:0.68:747
chr21	11038802	rs56253511	G	A	7970.77	.	AC=1;AF=0.500;AN=2;DB;DP=1490;set=Intersection	GT:AD:AF:DP	0/1:1024,463:0.31:1487
chr21	11038843	rs10433076	G	C	19565.77	.	AC=1;AF=0.500;AN=2;DB;DP=1422;set=Intersection	GT:AD:AF:DP	0/1:523,893:0.63:1416
chr21	11038868	rs67736403	C	T	19548.77	.	AC=1;AF=0.500;AN=2;DB;DP=1344;set=Intersection	GT:AD:AF:DP	0/1:490,846:0.63:1336
chr21	11039079	rs3888469	C	T	1542.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.568;ClippingRankSum=0.000;DB;DP=2467;ExcessHet=3.0103;FS=0.784;MLEAC=1;MLEAF=0.500;MQ=54.94;MQRankSum=0.335;QD=0.68;ReadPosRankSum=-1.914;SOR=0.785;set=HC	GT:AD:AF:DP	0/1:1953,302:0.13:2255
chr21	11039142	rs2537265	T	A	1493.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.049;ClippingRankSum=0.000;DB;DP=2138;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.72;MQRankSum=-2.877;QD=0.70;ReadPosRankSum=-0.355;SOR=0.750;set=HC	GT:AD:AF:DP	0/1:1937,182:0.09:2119
chr21	11039152	rs2740231	A	C	1403.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.377;ClippingRankSum=0.000;DB;DP=2154;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=-1.187;QD=0.66;ReadPosRankSum=0.749;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:1951,181:0.08:2132
chr21	11049364	rs468502	C	T	1554.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.877;ClippingRankSum=0.000;DB;DP=674;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.16;MQRankSum=0.120;QD=2.32;ReadPosRankSum=-0.408;SOR=0.513;set=HC	GT:AD:AF:DP	0/1:550,119:0.18:669
chr21	11049395	rs467462	T	C	29844.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.408;ClippingRankSum=0.000;DB;DP=929;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.74;MQRankSum=0.263;QD=32.26;ReadPosRankSum=-0.721;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:131,794:0.86:925
chr21	11049395	.	TAATAGGGTC	CAATAGGGTC,CAATAGGGTG	2944	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.37;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=21;MMLQ=24;MQ=49.25;NF=570,428;NR=203,152;PP=1477,2944;QD=1.95571955051;SC=TAGCGCCTAGTAATAGGGTCC;SbPval=0.49;Source=Platypus;TC=913;TCF=674;TCR=239;TR=773,580;WE=11049412;WS=11049385;set=Platypus	GT:AF:DP	0/1:0.85:913
chr21	11049404	rs2259244	C	G	15495.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.168;ClippingRankSum=0.000;DB;DP=933;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.27;MQRankSum=-0.441;QD=16.68;ReadPosRankSum=-0.847;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:304,625:0.67:929
chr21	11049503	rs7280925	T	A	6926.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=13.096;ClippingRankSum=0.000;DB;DP=756;ExcessHet=3.0103;FS=0.569;MLEAC=1;MLEAF=0.500;MQ=44.93;MQRankSum=-2.132;QD=9.30;ReadPosRankSum=1.007;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:460,285:0.38:745
chr21	11049516	rs468629	G	A	24431.77	.	AC=2;AF=1.00;AN=2;DB;DP=788;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.32;QD=31.81;SOR=1.335;set=HC	GT:AD:AF:DP	1/1:0,768:1.00:768
chr21	11058119	rs2261873	C	T	3295.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:69,131:0.66:200
chr21	11058226	rs4913558	G	C	8389.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.095;ClippingRankSum=0.000;DB;DP=866;ExcessHet=3.0103;FS=1.103;MLEAC=1;MLEAF=0.500;MQ=53.68;MQRankSum=5.398;QD=9.69;ReadPosRankSum=4.298;SOR=0.599;set=HC	GT:AD:AF:DP	0/1:453,413:0.48:866
chr21	11058227	rs2775343	T	A	5842.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=14.300;ClippingRankSum=0.000;DB;DP=877;ExcessHet=3.0103;FS=3.203;MLEAC=1;MLEAF=0.500;MQ=53.54;MQRankSum=-21.145;QD=6.66;ReadPosRankSum=-9.476;SOR=1.052;set=HC	GT:AD:AF:DP	0/1:699,178:0.20:877
chr21	11058229	rs55883018	T	C	3484.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=15.514;ClippingRankSum=0.000;DB;DP=914;ExcessHet=3.0103;FS=4.098;MLEAC=1;MLEAF=0.500;MQ=53.23;MQRankSum=-22.209;QD=3.82;ReadPosRankSum=-10.990;SOR=1.049;set=HC	GT:AD:AF:DP	0/1:714,199:0.22:913
chr21	11058349	rs209032	T	G	922.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.926;ClippingRankSum=0.000;DB;DP=806;ExcessHet=3.0103;FS=6.339;MLEAC=1;MLEAF=0.500;MQ=49.38;MQRankSum=10.105;QD=1.15;ReadPosRankSum=0.258;SOR=1.286;set=HC	GT:AD:AF:DP	0/1:680,124:0.15:804
chr21	11058404	rs58094605	A	ACT	6033.73	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:37,159:0.81:196
chr21	11059734	rs75838613	C	T	1777.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.329;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=4.534;MLEAC=1;MLEAF=0.500;MQ=55.55;MQRankSum=-2.692;QD=13.89;ReadPosRankSum=0.104;SOR=0.379;set=HC	GT:AD:AF:DP	0/1:79,49:0.38:128
chr21	11059735	rs2775349	T	C	4387.77	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=-2.429;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.58;MQRankSum=-2.416;QD=34.01;ReadPosRankSum=0.775;SOR=0.700;set=HC	GT:AD:AF:DP	1/1:8,121:0.94:129
chr21	11059736	rs7279429	G	A	699.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.404;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=5.684;MLEAC=1;MLEAF=0.500;MQ=55.58;MQRankSum=-6.147;QD=5.51;ReadPosRankSum=-1.081;SOR=1.346;set=HC	GT:AD:AF:DP	0/1:100,27:0.21:127
chr21	11059744	rs57566895	A	G	3061.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.533;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=1.382;MLEAC=1;MLEAF=0.500;MQ=55.97;MQRankSum=-7.455;QD=21.87;ReadPosRankSum=-0.441;SOR=0.828;set=HC	GT:AD:AF:DP	0/1:57,83:0.59:140
chr21	11059799	rs74827812	C	T	880.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.292;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=2.898;MLEAC=1;MLEAF=0.500;MQ=58.13;MQRankSum=-3.888;QD=4.84;ReadPosRankSum=-1.667;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:128,54:0.30:182
chr21	11059841	rs77547988	C	T	3381.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:169,89:0.34:258
chr21	11059845	rs7364036	C	T	1924.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:160,98:0.38:258
chr21	11059853	rs75278999	C	T	3536.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.358;ClippingRankSum=0.000;DB;DP=284;ExcessHet=3.0103;FS=4.201;MLEAC=1;MLEAF=0.500;MQ=59.26;MQRankSum=-4.801;QD=12.54;ReadPosRankSum=0.922;SOR=0.950;set=HC	GT:AD:AF:DP	0/1:185,97:0.34:282
chr21	11059853	.	CA	TG	2944	.	AC=1;AF=0.500;AN=2;BRF=0.44;FR=0.5000;HP=2;HapScore=1;MGOF=42;MMLQ=28;MQ=59.34;NF=35;NR=24;PP=2944;QD=20;SC=GACGTGGTGGCAGGCACCTGT;SbPval=0.78;Source=Platypus;TC=190;TCF=101;TCR=89;TR=59;WE=11059862;WS=11059831;set=Platypus	GT:AD:AF:DP	0/1:131,59:0.31:190
chr21	11059854	rs75079963	A	G	3857.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.889;ClippingRankSum=0.000;DB;DP=286;ExcessHet=3.0103;FS=5.719;MLEAC=1;MLEAF=0.500;MQ=59.27;MQRankSum=-4.758;QD=13.58;ReadPosRankSum=1.421;SOR=1.021;set=HC	GT:AD:AF:DP	0/1:179,105:0.37:284
chr21	11059877	rs7364059	T	C	6810.77	.	AC=1;AF=0.500;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:91,222:0.71:313
chr21	11059951	rs75112368	T	C	1463.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.437;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=2.582;MLEAC=1;MLEAF=0.500;MQ=58.97;MQRankSum=-3.012;QD=7.51;ReadPosRankSum=1.881;SOR=0.505;set=HC	GT:AD:AF:DP	0/1:117,78:0.40:195
chr21	11059982	rs75720212	A	G	144.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.722;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.25;MQRankSum=2.232;QD=1.22;ReadPosRankSum=-0.537;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:100,19:0.16:119
chr21	11060013	rs2838200	T	C	1946.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.816;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=2.062;MLEAC=1;MLEAF=0.500;MQ=57.26;MQRankSum=-2.842;QD=27.42;ReadPosRankSum=0.159;SOR=1.629;set=HC	GT:AD:AF:DP	0/1:11,60:0.85:71
chr21	11060025	rs146956675	AG	A	60.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.779;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=3.753;MLEAC=1;MLEAF=0.500;MQ=56.42;MQRankSum=2.448;QD=1.24;ReadPosRankSum=-0.450;SOR=0.086;set=HC	GT:AD:AF:DP	0/1:41,8:0.16:49
chr21	11060029	rs112803135	A	AAAAAT	715.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.711;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=3.123;MLEAC=1;MLEAF=0.500;MQ=56.30;MQRankSum=-4.341;QD=15.91;ReadPosRankSum=2.540;SOR=2.395;set=HC	GT:AD:AF:DP	0/1:21,24:0.53:45
chr21	11098664	rs75742769	A	G	1834.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.396;ClippingRankSum=0.000;DB;DP=737;ExcessHet=3.0103;FS=4.394;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=-6.156;QD=2.53;ReadPosRankSum=-6.019;SOR=1.147;set=HC	GT:AD:AF:DP	0/1:641,85:0.12:726
chr21	11098673	.	GTACTCCTAC	G	1975.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=6.208;ClippingRankSum=0.000;DP=865;ExcessHet=3.0103;FS=9.344;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=-6.159;QD=2.33;ReadPosRankSum=-4.243;SOR=1.588;set=HC	GT:AD:AF:DP	0/1:748,99:0.12:847
chr21	11098674	rs1752238	T	C	17010.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=804;set=Intersection	GT:AD:AF:DP	0/1:99,692:0.87:791
chr21	11098685	.	CTCCAGCCGCCA	C	3225.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.632;ClippingRankSum=0.000;DP=929;ExcessHet=3.0103;FS=9.569;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=-6.260;QD=3.56;ReadPosRankSum=-3.302;SOR=1.779;set=HC	GT:AD:AF:DP	0/1:804,103:0.11:907
chr21	11098704	rs74415742	A	G	4398.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.325;ClippingRankSum=0.000;DB;DP=974;ExcessHet=3.0103;FS=0.707;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=-5.518;QD=4.63;ReadPosRankSum=-5.526;SOR=0.794;set=HC	GT:AD:AF:DP	0/1:793,157:0.17:950
chr21	11098723	rs73151874	T	C	6269.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.155;ClippingRankSum=0.000;DB;DP=1010;ExcessHet=3.0103;FS=2.198;MLEAC=1;MLEAF=0.500;MQ=59.81;MQRankSum=-4.792;QD=6.39;ReadPosRankSum=-1.001;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:777,204:0.21:981
chr21	11098728	rs113315187	C	T	6419.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.639;ClippingRankSum=0.000;DB;DP=1014;ExcessHet=3.0103;FS=2.171;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=-4.660;QD=6.52;ReadPosRankSum=-0.022;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:771,214:0.22:985
chr21	11098827	rs79274499	C	T	2650.77	.	AC=1;AF=0.500;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	0/1:251,140:0.36:391
chr21	11098863	rs75318310	A	G	1533.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:119,68:0.36:187
chr21	14745218	rs112335608	C	G	418.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:39,22:0.36:61
chr21	14756428	.	T	TAC	113.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.385;ClippingRankSum=-0.000;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.08;MQRankSum=-0.000;QD=6.69;ReadPosRankSum=-1.252;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:8,9:0.53:17
chr21	14756438	rs3126400	T	C	203.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.498;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.40;MQRankSum=0.000;QD=7.55;ReadPosRankSum=-1.483;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:14,13:0.48:27
chr21	14756479	rs2026841	G	A	464.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.283;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.46;MQRankSum=0.000;QD=7.04;ReadPosRankSum=0.124;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:38,28:0.42:66
chr21	14756481	rs12627112	A	G	274.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.966;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=2.478;MLEAC=1;MLEAF=0.500;MQ=59.46;MQRankSum=0.718;QD=5.09;ReadPosRankSum=2.125;SOR=1.027;set=HC	GT:AD:AF:DP	0/1:37,17:0.31:54
chr21	14756481	.	ATA	GTG	849	.	AC=1;AF=0.500;AN=2;BRF=0.48;FR=0.5000;HP=2;HapScore=4;MGOF=28;MMLQ=28;MQ=59.03;NF=11;NR=4;PP=849;QD=60.1645249908;SC=GTGTGTGTGTATATATATATA;SbPval=0.88;Source=Platypus;TC=51;TCF=31;TCR=20;TR=15;WE=14756491;WS=14756469;set=Platypus	GT:AD:AF:DP	0/1:36,15:0.29:51
chr21	14756483	rs12627113	A	G	681.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.069;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=2.244;MLEAC=1;MLEAF=0.500;MQ=59.46;MQRankSum=0.871;QD=12.17;ReadPosRankSum=2.209;SOR=0.921;set=HC	GT:AD:AF:DP	0/1:33,23:0.41:56
chr21	14756749	rs9979106	G	A	3837.77	.	AC=1;AF=0.500;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	0/1:228,182:0.44:410
chr21	14756973	rs2821831	T	A	4616.77	.	AC=1;AF=0.500;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	0/1:209,209:0.50:418
chr21	14757043	rs2257596	T	C	5846.77	.	AC=1;AF=0.500;AN=2;DB;DP=534;set=Intersection	GT:AD:AF:DP	0/1:267,267:0.50:534
chr21	14757095	.	GT	TT	2972	.	AC=1;AF=0.500;AN=2;BRF=0.45;FR=0.5000,0.5000;HP=6;HapScore=1;MGOF=11;MMLQ=26;MQ=40.73;NF=37,123;NR=112,106;PP=2972,2962;QD=20;SC=CAAGTTCTTGGTTTTTTCTTG;SbPval=0.84;Source=Platypus;TC=338;TCF=105;TCR=233;TR=149,229;WE=14757103;WS=14757085;set=Platypus	GT:AD:AF:DP	0/1:228,229:0.50:457
chr21	14757095	.	GT	GTT	2972	.	AC=1;AF=0.500;AN=2;BRF=0.45;FR=0.5000,0.5000;HP=6;HapScore=1;MGOF=11;MMLQ=26;MQ=40.73;NF=37,123;NR=112,106;PP=2972,2962;QD=20;SC=CAAGTTCTTGGTTTTTTCTTG;SbPval=0.84;Source=Platypus;TC=338;TCF=105;TCR=233;TR=149,229;WE=14757103;WS=14757085;set=Platypus	GT:AD:AF:DP	0/1:189,149:0.44:338
chr21	14757095	rs201656826	G	T,GT	12145.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=529;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=46.62;QD=23.86;SOR=0.729;set=HC	GT:AD:AF:DP	1/2:0,252,257:0.50,0.50:509
chr21	14757565	rs2821832	C	G	710.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:28,30:0.52:58
chr21	14758516	rs2821833	T	A	332.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:22,15:0.41:37
chr21	14758756	rs138797601	T	C	595.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:26,23:0.47:49
chr21	14760151	rs2775777	T	C	4666.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr21	14765864	rs143497898	A	T	241.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=30.22;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr21	14766093	rs2775805	G	A	1460.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr21	14766173	.	G	A	552.77	.	AC=1;AF=0.500;AN=2;DP=33;set=Intersection	GT:AD:AF:DP	0/1:11,22:0.67:33
chr21	14771177	rs8127875	T	C	462.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:40,23:0.37:63
chr21	14771327	rs143695938	TC	T	2472.73	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:73,80:0.52:153
chr21	14777540	rs111361156	A	G	2887.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:161,146:0.48:307
chr21	14778721	rs2747232	A	T	138.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.81;QD=27.78;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr21	14778811	rs112146711	C	T	287.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.10;QD=26.16;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr21	15373420	rs1297087	C	A	12196.77	.	AC=2;AF=1.00;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	1/1:0,435:1.00:435
chr21	15399864	rs2298673	T	C	6713.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr21	15481157	rs1136522	T	C	1012.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr21	15481168	rs62208635	C	A	579.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:23,25:0.52:48
chr21	15481234	rs7279700	C	T	3645.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr21	15481365	rs7278737	G	T	3464.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr21	15516976	rs7283442	T	A	3679.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr21	15524921	rs74369337	C	T	537.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:56,30:0.35:86
chr21	15535889	rs73346033	A	G	988.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:36,45:0.56:81
chr21	15537727	rs75730972	A	G	1164.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:54,52:0.49:106
chr21	15554338	rs381352	T	C	873.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:26,32:0.55:58
chr21	15554350	rs17305808	T	A	565.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:23,23:0.50:46
chr21	15558203	rs200600449	C	CAAA	883.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=35.35;SOR=3.383;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr21	15558346	rs397517	G	A	6003.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr21	15558464	rs397825	G	A	4354.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr21	15561781	rs416402	G	A	686.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:17,29:0.63:46
chr21	15583220	rs440287	G	A	4059.77	.	AC=1;AF=0.500;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	0/1:222,202:0.48:424
chr21	15583332	rs380272	T	C	1960.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:112,91:0.45:203
chr21	15596772	rs409782	T	G	2371.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr21	15596882	rs410052	T	C	870.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr21	15599118	rs2822443	A	G	1446.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:57,61:0.52:118
chr21	15599144	rs2822444	T	C	4795.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:2,181:0.99:183
chr21	15599466	rs7280643	A	G	2133.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:97,103:0.52:200
chr21	15646397	rs8129984	A	G	1167.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.95;SOR=1.559;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr21	15652069	rs2254297	A	G	471.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:21,22:0.51:43
chr21	15652160	rs2276212	T	C	51.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:5,3:0.38:8
chr21	15659778	rs1014538	C	T	636.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr21	15660716	rs1153305	G	A	2524.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr21	15663704	rs372000716	TA	T	256.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.141;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=7.633;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.76;ReadPosRankSum=0.747;SOR=0.861;set=HC	GT:AD:AF:DP	0/1:54,39:0.42:93
chr21	15663777	rs34559607	A	AGTGT,AGTGTGT	3420.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=127;set=Intersection	GT:AF:DP	1/2:0.45,0.49:96
chr21	15671844	rs2822558	G	A	4747.77	.	AC=1;AF=0.500;AN=2;DB;DP=546;set=Intersection	GT:AD:AF:DP	0/1:295,249:0.46:544
chr21	15748186	rs2822642	C	A	1656.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:56,74:0.57:130
chr21	15755349	rs7281846	T	C	10042.77	.	AC=1;AF=0.500;AN=2;DB;DP=997;set=Intersection	GT:AD:AF:DP	0/1:485,497:0.51:982
chr21	15870638	rs2274796	C	T	386.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:7,15:0.68:22
chr21	15884949	rs3761320	A	T	1191.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:60,55:0.48:115
chr21	15893594	rs760345	T	C	1468.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:34,63:0.65:97
chr21	15954528	rs2822785	G	A	3871.77	.	AC=1;AF=0.500;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	0/1:172,182:0.51:354
chr21	15954660	rs2822787	T	C	14799.77	.	AC=2;AF=1.00;AN=2;DB;DP=551;set=Intersection	GT:AD:AF:DP	1/1:0,538:1.00:538
chr21	15955911	rs2822793	C	T	2010.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:84,83:0.50:167
chr21	15964920	rs466913	C	G	1171.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:84,59:0.41:143
chr21	15966421	rs460852	T	A	995.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:29,46:0.61:75
chr21	15974409	rs456067	T	C	1721.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr21	15984864	rs1292581	G	T	1793.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:133,92:0.41:225
chr21	15984982	rs2822809	C	A	2113.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:107,99:0.48:206
chr21	15988184	.	CAAAAAA	C	76.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.161;ClippingRankSum=-0.000;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.69;MQRankSum=-0.000;QD=2.84;ReadPosRankSum=1.614;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:20,7:0.26:27
chr21	15991786	rs1292586	C	G	767.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr21	16015250	rs458292	A	G	1293.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.948;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.06;ReadPosRankSum=-0.198;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:40,52:0.57:92
chr21	17236477	.	CA	C	164.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.297;ClippingRankSum=0.000;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.61;ReadPosRankSum=-0.596;SOR=0.519;set=HC	GT:AD:AF:DP	0/1:41,22:0.35:63
chr21	17236804	.	CT	C	39.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.452;ClippingRankSum=0.000;DP=75;ExcessHet=3.0103;FS=2.208;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.931;QD=0.69;ReadPosRankSum=-0.598;SOR=0.194;set=HC	GT:AD:AF:DP	0/1:45,13:0.22:58
chr21	17533027	rs34485071	C	T	1710.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=2.857;MLEAC=1;MLEAF=0.500;MQ=62.27;MQRankSum=4.326;QD=20.61;ReadPosRankSum=4.434;SOR=1.302;set=HC	GT:AD:AF:DP	0/1:38,45:0.54:83
chr21	17533030	rs13052116	C	T	1658.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.642;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=3.473;MLEAC=1;MLEAF=0.500;MQ=62.32;MQRankSum=0.295;QD=20.48;ReadPosRankSum=-0.800;SOR=0.270;set=HC	GT:AD:AF:DP	0/1:37,44:0.54:81
chr21	17533075	.	T	TTCTTCTTTCTTC	1516.73	.	AC=2;AF=1.00;AN=2;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=65.87;QD=40.99;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:2,35:0.95:37
chr21	17533255	rs34726086	G	A	5134.77	.	AC=1;AF=0.500;AN=2;DB;DP=537;set=Intersection	GT:AD:AF:DP	0/1:266,256:0.49:522
chr21	17560174	rs10629120	T	TTCCTTCCC	6318.73	.	AC=2;AF=1.00;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.04;QD=46.12;SOR=1.789;set=HC	GT:AD:AF:DP	1/1:0,137:1.00:137
chr21	18814243	rs208893	T	C	1454.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.401;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=1.053;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=0.989;QD=17.11;ReadPosRankSum=0.709;SOR=0.517;set=HC	GT:AD:AF:DP	0/1:41,44:0.52:85
chr21	18814246	rs5842640	G	GT	1318.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.377;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.248;QD=16.69;ReadPosRankSum=3.229;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:40,39:0.49:79
chr21	18816599	.	C	CT	71.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.405;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=11.974;MLEAC=1;MLEAF=0.500;MQ=59.74;MQRankSum=-0.909;QD=3.26;ReadPosRankSum=0.263;SOR=0.332;set=HC	GT:AD:AF:DP	0/1:11,11:0.50:22
chr21	18933828	rs2824359	A	G	2645.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:99,124:0.56:223
chr21	18966724	rs5842649	GACAA	G	1037.73	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:24,28:0.54:52
chr21	18976385	rs67787603	C	A	389.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:23,20:0.47:43
chr21	19167479	rs2258119	T	C	5135.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr21	19169218	rs2824495	G	C	9810.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	1/1:0,341:1.00:341
chr21	19190427	rs243556	C	T	789.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr21	19506579	rs2824645	A	G	1041.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:48,51:0.52:99
chr21	19506651	rs2824646	G	A	1924.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:130,94:0.42:224
chr21	19506694	rs9977750	T	G	4990.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:192,137:0.42:329
chr21	19506715	rs2824647	C	T	5238.77	.	AC=1;AF=0.500;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	0/1:209,146:0.41:355
chr21	19642285	rs7276699	G	T	2718.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:139,127:0.48:266
chr21	19642551	rs74740848	G	T	809.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:36,35:0.49:71
chr21	19651455	rs182632407	T	A	624.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;MQ=59.98;set=Intersection	GT:AD:AF:DP	0/1:41,29:0.41:70
chr21	19670118	rs2824721	G	A	2426.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:173,120:0.41:293
chr21	19687376	rs2144203	G	A	4285.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr21	19704296	rs1155847	C	T	2016.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr21	19732234	rs75692821	T	A	651.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:37,32:0.46:69
chr21	19744415	rs377458247	ATG	A,ATGTGTGTG	1308.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.941;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.14;MQRankSum=0.405;QD=19.53;ReadPosRankSum=0.190;SOR=0.487;set=HC	GT:AD:AF:DP	1/2:9,34,24:0.51,0.36:67
chr21	19756040	rs2824790	C	G	4835.77	.	AC=1;AF=0.500;AN=2;DB;DP=488;set=Intersection	GT:AD:AF:DP	0/1:253,229:0.48:482
chr21	20058298	rs6517825	C	T	3639.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr21	22371166	rs6518017	G	A	681.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr21	22643720	rs8127865	A	G	422.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:23,21:0.48:44
chr21	22652720	rs9306013	C	T	308.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr21	22653099	rs1012523	G	A	76.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.256;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.04;ReadPosRankSum=-0.190;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:14,5:0.26:19
chr21	22656409	rs34246223	AT	A	1336.73	.	AC=2;AF=1.00;AN=2;DB;DP=61;MQ=60.35;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr21	22658544	rs111713483	TTTTGTGA	T	1211.73	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:60,34:0.36:94
chr21	22696837	rs232467	C	G	4369.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr21	22696881	rs11334381	TG	T	3504.73	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr21	22804674	rs2826833	C	T	829.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:36,36:0.50:72
chr21	22838882	.	ATG	A	138.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.612;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=1.543;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.62;ReadPosRankSum=-0.438;SOR=0.389;set=HC	GT:AD:AF:DP	0/1:44,9:0.17:53
chr21	22838884	rs181105287	G	A	387.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:35,18:0.34:53
chr21	22881251	rs2017705	A	G	1317.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:70,66:0.49:136
chr21	22910116	rs2826891	C	T	442.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.354;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=4.993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.25;ReadPosRankSum=1.160;SOR=2.093;set=HC	GT:AD:AF:DP	0/1:11,12:0.52:23
chr21	22910123	rs9979040	T	G	470.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.285;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=4.925;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.83;ReadPosRankSum=0.394;SOR=2.049;set=HC	GT:AD:AF:DP	0/1:12,13:0.52:25
chr21	26960189	rs2829806	T	G	728.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:28,29:0.51:57
chr21	26961086	rs2829807	T	C	1897.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:92,93:0.50:185
chr21	26965100	rs2829809	C	A	1811.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:95,91:0.49:186
chr21	26965148	rs1135638	G	A	2982.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:146,147:0.50:293
chr21	26965205	rs1057885	T	C	2427.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:124,115:0.48:239
chr21	26966317	rs13048408	A	G	622.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:16,26:0.62:42
chr21	26969703	rs1135618	T	C	812.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:25,41:0.62:66
chr21	26973663	rs140202502	A	ATATACT	6218.73	.	AC=1;AF=0.500;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	0/1:182,157:0.46:339
chr21	26976250	rs7278164	A	G	5130.77	.	AC=1;AF=0.500;AN=2;DB;DP=592;set=Intersection	GT:AD:AF:DP	0/1:317,261:0.45:578
chr21	26978950	rs3989369	A	G	6236.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr21	26979628	rs9653688	G	A	9054.77	.	AC=1;AF=0.500;AN=2;DB;DP=855;set=Intersection	GT:AD:AF:DP	0/1:425,422:0.50:847
chr21	27056099	rs2829863	C	A	478.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:18,21:0.54:39
chr21	27141273	rs56048433	C	CATTT	1737.73	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:59,44:0.43:103
chr21	27254194	rs2829966	C	T	151.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr21	27263945	rs367709245	GATACTT	G	5866.73	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:117,149:0.56:266
chr21	27318418	rs2409160	G	C	4644.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:1,170:0.99:171
chr21	27327100	rs417676	G	A	1212.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr21	27327862	rs2251337	G	C	3014.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr21	27369481	rs2051504	C	T	1179.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr21	27382267	.	TA	T	274.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.731;ClippingRankSum=0.000;DP=276;ExcessHet=3.0103;FS=2.796;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=-0.958;QD=1.05;ReadPosRankSum=-0.547;SOR=0.913;set=HC	GT:AD:AF:DP	0/1:200,62:0.24:262
chr21	27382362	rs11455808	A	AG	11089.73	.	AC=2;AF=1.00;AN=2;DB;DP=290;MQ=60.15;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr21	27382417	rs2409166	C	G	3883.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr21	27423561	rs2070655	G	T	1851.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:63,82:0.57:145
chr21	27852724	rs966410	A	G	14097.77	.	AC=2;AF=1.00;AN=2;DB;DP=526;set=Intersection	GT:AD:AF:DP	1/1:0,521:1.00:521
chr21	28210657	rs229042	T	C	7420.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:2,263:0.99:265
chr21	28212760	rs436525	G	A	10419.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	1/1:0,381:1.00:381
chr21	28215619	rs422381	T	C	921.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr21	28215826	rs373460567	C	CACA	9653.73	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr21	28215836	rs3838077	GC	G	9693.73	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr21	28215987	rs417301	T	C	3733.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr21	28216038	rs422803	C	A	4540.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr21	28216059	rs400852	A	G	6838.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.84;SOR=0.800;set=HC	GT:AD:AF:DP	1/1:0,156:1.00:156
chr21	28216066	rs370850	C	T	6691.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.61;SOR=0.775;set=HC	GT:AD:AF:DP	1/1:0,150:1.00:150
chr21	28216240	rs451792	G	C	2385.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr21	28216299	rs428616	T	C	1251.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr21	28216445	rs408358	A	C	2222.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr21	28216595	rs428785	C	G	10684.77	.	AC=2;AF=1.00;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	1/1:0,388:1.00:388
chr21	28216674	rs409630	G	C	21079.77	.	AC=2;AF=1.00;AN=2;DB;DP=496;set=Intersection	GT:AD:AF:DP	1/1:0,493:1.00:493
chr21	28216692	rs445784	G	T	20483.77	.	AC=2;AF=1.00;AN=2;DB;DP=479;set=Intersection	GT:AD:AF:DP	1/1:0,475:1.00:475
chr21	28217178	rs434857	T	G	13486.77	.	AC=2;AF=1.00;AN=2;DB;DP=514;set=Intersection	GT:AD:AF:DP	1/1:0,507:1.00:507
chr21	28217320	rs402007	C	G	9202.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:2,334:0.99:336
chr21	28296324	rs151065	A	G	6428.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr21	28296389	rs3746839	A	G	4473.77	.	AC=1;AF=0.500;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	0/1:208,197:0.49:405
chr21	28302355	rs226794	A	G	8126.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr21	28305212	rs2830585	C	T	3901.77	.	AC=1;AF=0.500;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	0/1:162,180:0.53:342
chr21	28305477	rs2830586	T	G	795.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:26,31:0.54:57
chr21	28326276	rs233894	G	A	365.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:32,20:0.38:52
chr21	28327320	rs12626485	C	T	395.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:24,18:0.43:42
chr21	30250555	rs2205446	T	C	4955.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr21	30250615	rs2205447	T	C	8195.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr21	30250812	rs2205448	T	C	713.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr21	30252088	rs2205449	T	A	316.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:4,14:0.78:18
chr21	30254695	rs2254507	C	T	1617.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:57,72:0.56:129
chr21	30257418	rs1997605	G	A	2740.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:121,120:0.50:241
chr21	30257560	rs1997606	C	G	8753.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.259;ClippingRankSum=0.000;DB;DP=924;ExcessHet=3.0103;FS=1.091;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.49;ReadPosRankSum=0.646;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:488,434:0.47:922
chr21	30257568	rs1997607	T	C	32078.77	.	AC=2;AF=1.00;AN=2;DB;DP=911;set=Intersection	GT:AD:AF:DP	1/1:0,908:1.00:908
chr21	30257729	rs2859734	A	G	1037.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:56,42:0.43:98
chr21	30303388	rs58119493	GGTGT	G	1985.73	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:17,60:0.78:77
chr21	30318466	rs2243552	T	G	1883.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:69,86:0.55:155
chr21	30324755	rs2832146	G	A	347.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr21	30325875	rs2243491	A	T	513.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:9,21:0.70:30
chr21	30338293	rs5843357	G	GC	3428.73	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr21	30339120	rs34191159	C	A	2447.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:118,108:0.48:226
chr21	30339205	.	AT	A	110.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.326;ClippingRankSum=0.000;DP=439;ExcessHet=3.0103;FS=4.037;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=2.247;QD=0.27;ReadPosRankSum=0.998;SOR=0.456;set=HC	GT:AD:AF:DP	0/1:346,69:0.17:415
chr21	30339234	rs61735768	T	C	6580.77	.	AC=1;AF=0.500;AN=2;DB;DP=602;set=Intersection	GT:AD:AF:DP	0/1:286,305:0.52:591
chr21	30341891	rs2254796	A	G	805.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:70,42:0.38:112
chr21	30354610	rs2832150	T	C	1421.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:100,72:0.42:172
chr21	30357307	rs2245434	C	T	970.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:28,42:0.60:70
chr21	30365322	rs2249028	G	A	1850.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:77,82:0.52:159
chr21	30391671	rs138840391	GAAA	G	959.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.611;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.37;MQRankSum=0.932;QD=20.86;ReadPosRankSum=0.647;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:13,33:0.72:46
chr21	30400110	rs8133768	G	A	339.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:15,15:0.50:30
chr21	30412880	rs117530642	A	G	199.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:19,11:0.37:30
chr21	30414724	rs2254872	C	T	1146.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:99,65:0.40:164
chr21	30442475	rs2183569	T	C	445.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.838;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=5.267;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.37;ReadPosRankSum=0.000;SOR=2.044;set=HC	GT:AD:AF:DP	0/1:30,13:0.30:43
chr21	30442481	rs2183570	C	T	503.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.110;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=1.882;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.50;ReadPosRankSum=-0.456;SOR=1.371;set=HC	GT:AD:AF:DP	0/1:32,16:0.33:48
chr21	30445961	rs2012645	G	A	2801.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:143,126:0.47:269
chr21	30481371	rs2832181	G	T	3280.77	.	AC=1;AF=0.500;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	0/1:191,157:0.45:348
chr21	30481612	rs2832182	G	A	1172.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:54,53:0.50:107
chr21	30505836	rs9636820	T	C	1253.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:79,64:0.45:143
chr21	30532146	rs66780570	TA	T	1442.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.242;ClippingRankSum=0.000;DB;DP=224;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=2.168;QD=6.87;ReadPosRankSum=1.056;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:95,115:0.55:210
chr21	30532437	rs2832224	G	A	2047.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:127,100:0.44:227
chr21	30830393	rs9981313	T	G	1633.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:97,84:0.46:181
chr21	30925853	rs112669361	CT	C	205.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.211;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=2.207;QD=1.92;ReadPosRankSum=-0.595;SOR=0.580;set=HC	GT:AD:AF:DP	0/1:76,31:0.29:107
chr21	30971270	rs41276554	A	G	4635.77	.	AC=1;AF=0.500;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	0/1:228,222:0.49:450
chr21	31026967	rs10637196	A	AAAAG	1965.73	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:61,50:0.45:111
chr21	31062070	rs363538	T	G	4572.77	.	AC=1;AF=0.500;AN=2;DB;DP=525;set=Intersection	GT:AD:AF:DP	0/1:285,235:0.45:520
chr21	31066436	rs11434895	A	ATT	224.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.509;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=0.000;QD=7.75;ReadPosRankSum=0.755;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:10,19:0.66:29
chr21	31233814	rs468206	A	G	103.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:15,7:0.32:22
chr21	31233892	.	GGGATT	G	822.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.393;ClippingRankSum=0.000;DP=68;ExcessHet=3.0103;FS=13.112;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.10;ReadPosRankSum=0.928;SOR=2.462;set=HC	GT:AD:AF:DP	0/1:46,22:0.32:68
chr21	31233898	.	A	AACCAACACT	822.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=4.031;ClippingRankSum=0.000;DP=69;ExcessHet=3.0103;FS=15.287;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.92;ReadPosRankSum=1.572;SOR=2.556;set=HC	GT:AD:AF:DP	0/1:47,22:0.32:69
chr21	31233900	rs55707309	A	G	866.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.714;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=17.795;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.87;ReadPosRankSum=1.968;SOR=2.761;set=HC	GT:AD:AF:DP	0/1:49,24:0.33:73
chr21	31233904	rs142587327	G	GT	856.73	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:49,25:0.34:74
chr21	31233994	rs468413	T	C	1162.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:63,57:0.47:120
chr21	31655212	rs1557291	A	C	2110.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr21	31661691	rs8127420	A	G	5077.77	.	AC=1;AF=0.500;AN=2;DB;DP=550;set=Intersection	GT:AD:AF:DP	0/1:305,236:0.44:541
chr21	31691571	rs2236427	C	A	277.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:15,12:0.44:27
chr21	31709691	rs2244485	G	A	2743.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:161,131:0.45:292
chr21	31720287	rs762377	A	G	4218.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr21	31744127	rs877346	A	T	3819.77	.	AC=1;AF=0.500;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	0/1:166,169:0.50:335
chr21	31802768	rs2226548	G	A	14577.77	.	AC=2;AF=1.00;AN=2;DB;DP=551;set=Intersection	GT:AD:AF:DP	1/1:0,547:1.00:547
chr21	31803159	rs1539783	T	C	2508.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:2,96:0.98:98
chr21	31803210	rs1539784	C	T	1333.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr21	31812772	rs2832873	C	A	13730.77	.	AC=2;AF=1.00;AN=2;DB;DP=511;set=Intersection	GT:AD:AF:DP	1/1:0,499:1.00:499
chr21	31869286	rs2298437	T	C	21856.77	.	AC=2;AF=1.00;AN=2;DB;DP=792;set=Intersection	GT:AD:AF:DP	1/1:1,778:1.00:779
chr21	31913981	rs5843453	AG	A	31191.73	.	AC=2;AF=1.00;AN=2;DB;DP=707;set=Intersection	GT:AD:AF:DP	1/1:1,696:1.00:697
chr21	31914000	rs1023364	T	A	33668.77	.	AC=2;AF=1.00;AN=2;DB;DP=810;set=Intersection	GT:AD:AF:DP	1/1:1,803:1.00:804
chr21	31964916	rs9305426	A	C	18669.77	.	AC=2;AF=1.00;AN=2;DB;DP=661;set=Intersection	GT:AD:AF:DP	1/1:0,653:1.00:653
chr21	31973516	rs198915	T	A	5865.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:2,224:0.99:226
chr21	31973685	rs1961491	C	T	1205.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr21	31992864	rs1702405	A	G	2484.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr21	32201822	rs9982910	G	T	7220.77	.	AC=1;AF=0.500;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	0/1:234,191:0.45:425
chr21	32201835	rs9982675	A	C	7453.77	.	AC=1;AF=0.500;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	0/1:248,205:0.45:453
chr21	32201866	rs9982755	A	G	4554.77	.	AC=1;AF=0.500;AN=2;DB;DP=472;set=Intersection	GT:AD:AF:DP	0/1:242,220:0.48:462
chr21	32201951	rs9982775	A	G	3362.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:145,162:0.53:307
chr21	32201969	rs35359062	GA	G	11132.73	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr21	32202106	rs2833118	T	A	521.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:51,27:0.35:78
chr21	32434766	rs2070405	C	T	1763.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:127,87:0.41:214
chr21	32524852	rs9305453	A	G	2285.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:107,112:0.51:219
chr21	32525302	rs723470	A	C	2946.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:159,142:0.47:301
chr21	32525345	rs723469	G	A	3618.77	.	AC=1;AF=0.500;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	0/1:203,181:0.47:384
chr21	32526525	rs12482307	C	T	1694.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:108,85:0.44:193
chr21	32526758	rs78007898	G	T	1456.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:38,65:0.63:103
chr21	32597972	rs11373053	C	CA	122.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.655;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.73;ReadPosRankSum=-0.148;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:52,19:0.27:71
chr21	32931691	rs117577519	G	A	2616.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:99,117:0.54:216
chr21	33057312	rs367618143	TG	T	600.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.188;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.25;ReadPosRankSum=0.232;SOR=4.332;set=HC	GT:AD:AF:DP	1/1:2,25:0.93:27
chr21	33073985	rs204734	T	C	1203.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr21	33312539	.	CT	C	84.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.174;ClippingRankSum=0.000;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.03;ReadPosRankSum=-0.340;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:62,20:0.24:82
chr21	33355760	rs737103	G	A	2274.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr21	33641251	.	C	CT	81.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.165;ClippingRankSum=0.000;DP=117;ExcessHet=3.0103;FS=3.876;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.72;ReadPosRankSum=1.531;SOR=0.319;set=HC	GT:AD:AF:DP	0/1:91,22:0.19:113
chr21	33690293	rs2070380	C	A	1593.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr21	33691502	rs11402028	G	GC	3132.73	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr21	33691754	rs958828	G	A	7223.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr21	33694224	rs3761342	C	G	13765.77	.	AC=2;AF=1.00;AN=2;DB;DP=511;set=Intersection	GT:AD:AF:DP	1/1:1,505:1.00:506
chr21	33710001	rs13046776	C	A	1266.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr21	33719695	rs2070378	C	T	10754.77	.	AC=2;AF=1.00;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	1/1:0,394:1.00:394
chr21	33721843	rs743306	T	C	2294.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr21	33726201	rs2298363	C	T	1714.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:69,74:0.52:143
chr21	33730013	rs7283283	T	C	1543.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.13;SOR=1.938;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr21	33733468	rs145739787	A	AAAAGAAAG	313.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.22;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr21	33740637	rs7276783	G	A	1759.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr21	33746113	rs117415725	A	C	3476.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:134,153:0.53:287
chr21	33749533	rs4816431	A	C	7964.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr21	33830006	rs55878843	G	A	2437.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:117,121:0.51:238
chr21	33974094	rs71681513	CT	C	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.123;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=2.151;QD=0.30;ReadPosRankSum=-0.839;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:84,23:0.21:107
chr21	33982072	.	CA	C	232.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.641;ClippingRankSum=0.000;DP=228;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=2.516;QD=1.09;ReadPosRankSum=0.589;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:164,49:0.23:213
chr21	33997466	rs701730	A	G	1021.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:40,44:0.52:84
chr21	34003928	rs71640263	A	AAGTATT	9147.73	.	AC=1;AF=0.500;AN=2;DB;DP=581;set=Intersection	GT:AD:AF:DP	0/1:328,237:0.42:565
chr21	34017857	rs2406	T	A	151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.003;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=5.315;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.93;ReadPosRankSum=0.554;SOR=0.086;set=HC	GT:AD:AF:DP	0/1:8,9:0.53:17
chr21	34018437	rs844978	C	T	2426.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:99,111:0.53:210
chr21	34038983	rs844998	A	G	525.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:29,22:0.43:51
chr21	34053961	rs844988	T	A	5195.77	.	AC=1;AF=0.500;AN=2;DB;DP=532;set=Intersection	GT:AD:AF:DP	0/1:276,241:0.47:517
chr21	34059207	rs844975	C	T	438.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:36,24:0.40:60
chr21	34115455	rs2298365	T	C	1104.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:58,47:0.45:105
chr21	34127438	rs202236576	TAA	T,TA	704.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=3.380;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=7.006;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.40;MQRankSum=0.493;QD=9.79;ReadPosRankSum=1.872;SOR=2.390;set=HC	GT:AD:AF:DP	1/2:12,31,29:0.43,0.40:72
chr21	34128717	rs7279405	G	A	2102.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:102,100:0.50:202
chr21	34141995	rs2051384	C	T	240.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:18,13:0.42:31
chr21	34157085	.	G	GT	117.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.452;ClippingRankSum=0.000;DP=110;ExcessHet=3.0103;FS=1.106;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.18;ReadPosRankSum=0.584;SOR=0.465;set=HC	GT:AD:AF:DP	0/1:75,25:0.25:100
chr21	34157235	rs35174687	GT	G	822.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.946;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=0.723;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.01;ReadPosRankSum=0.899;SOR=0.587;set=HC	GT:AD:AF:DP	0/1:73,64:0.47:137
chr21	34165864	rs2231391	C	A	391.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:16,17:0.52:33
chr21	34166190	rs74617086	A	T	9182.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:0,329:1.00:329
chr21	34166343	rs2231390	C	T	6209.77	.	AC=1;AF=0.500;AN=2;DB;DP=603;set=Intersection	GT:AD:AF:DP	0/1:301,298:0.50:599
chr21	34169181	rs762228	A	G	1439.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.513;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=3.945;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.12;ReadPosRankSum=1.308;SOR=0.398;set=HC	GT:AD:AF:DP	0/1:36,66:0.65:102
chr21	34169317	rs72564613	C	CT	2948.73	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:87,87:0.50:174
chr21	34399401	rs762178	A	G	6854.77	.	AC=1;AF=0.500;AN=2;DB;DP=657;set=Intersection	GT:AD:AF:DP	0/1:310,332:0.52:642
chr21	34442676	.	C	CCCT	3165.73	.	AC=1;AF=0.500;AN=2;DP=265;set=Intersection	GT:AD:AF:DP	0/1:113,87:0.43:200
chr21	34538065	rs11444667	C	CT	7309.73	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr21	34540594	rs11379155	C	CT	3331.73	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr21	34542150	rs2834117	G	A	2896.73	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:113,128:0.53:241
chr21	34542356	rs2834118	A	G	6351.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.271;ClippingRankSum=0.000;DB;DP=598;ExcessHet=3.0103;FS=2.471;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=-1.003;QD=10.95;ReadPosRankSum=0.744;SOR=0.888;set=HC	GT:AD:AF:DP	0/1:288,292:0.50:580
chr21	34617213	rs2834158	T	C	8425.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,326:1.00:326
chr21	34617729	rs2252639	A	G	2927.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr21	34617950	rs2252650	A	T	468.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr21	34624386	rs71894734	CATCT	C	4938.73	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr21	34624917	rs2236757	A	G	840.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:1,26:0.96:27
chr21	34635065	rs9984273	C	T	3733.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.422;ClippingRankSum=0.000;DB;DP=453;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=0.247;QD=8.33;ReadPosRankSum=-0.799;SOR=0.649;set=HC	GT:AD:AF:DP	0/1:262,186:0.42:448
chr21	34635079	.	C	CT	487.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.323;ClippingRankSum=0.000;DP=455;ExcessHet=3.0103;FS=1.780;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=1.858;QD=1.28;ReadPosRankSum=1.181;SOR=0.544;set=HC	GT:AD:AF:DP	0/1:290,90:0.24:380
chr21	34638859	rs2239573	G	A	2016.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:65,88:0.58:153
chr21	34649123	rs2285020	G	A	2383.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:129,109:0.46:238
chr21	34660676	rs66527331	ACG	A	823.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.606;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=1.182;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.96;ReadPosRankSum=1.278;SOR=0.917;set=HC	GT:AD:AF:DP	0/1:25,34:0.58:59
chr21	34660709	rs66834406	CAG	C	417.73	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:35,22:0.39:57
chr21	34666111	rs139112783	CAA	C	472.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.342;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.28;ReadPosRankSum=-0.232;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:23,23:0.50:46
chr21	34666376	rs1467845	A	G	3488.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:122,159:0.57:281
chr21	34668747	rs3171425	A	G	5608.77	.	AC=1;AF=0.500;AN=2;DB;DP=560;set=Intersection	GT:AD:AF:DP	0/1:290,265:0.48:555
chr21	34697197	rs55884088	G	GGTGTGTGTGTGTGTGTGT	315.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.466;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.77;ReadPosRankSum=0.718;SOR=0.511;set=HC	GT:AD:AF:DP	0/1:25,11:0.31:36
chr21	34697264	rs2850015	T	C	844.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:67,45:0.40:112
chr21	34707808	rs2243592	T	G	1633.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:74,83:0.53:157
chr21	34708061	rs2243594	A	G	123.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:13,7:0.35:20
chr21	34717725	.	G	A	6155.77	.	AC=1;AF=0.500;AN=2;DP=603;set=Intersection	GT:AD:AF:DP	0/1:301,296:0.50:597
chr21	34721348	rs2834196	A	G	601.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:21,24:0.53:45
chr21	34726127	rs2856973	T	A	983.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:54,44:0.45:98
chr21	34775721	rs17882748	T	C	71.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.336;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.52;ReadPosRankSum=0.289;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:6,5:0.45:11
chr21	34793706	rs2834214	C	T	2086.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:98,93:0.49:191
chr21	34799350	rs11910627	C	G	7830.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr21	34804966	rs1532	T	C	8733.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	1/1:0,332:1.00:332
chr21	34805197	rs17883129	C	T	1050.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.099;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=4.874;MLEAC=1;MLEAF=0.500;MQ=60.61;MQRankSum=1.347;QD=12.51;ReadPosRankSum=-2.275;SOR=1.571;set=HC	GT:AD:AF:DP	0/1:37,47:0.56:84
chr21	34809049	rs2040120	T	A	1448.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.988;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.27;ReadPosRankSum=-0.339;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:79,62:0.44:141
chr21	34823252	rs2834220	C	T	806.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:39,40:0.51:79
chr21	34837623	rs2248820	C	A	937.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:61,48:0.44:109
chr21	34837786	rs2243511	A	G	559.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:15,25:0.62:40
chr21	34839533	rs743334	A	G	1860.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:96,80:0.45:176
chr21	34860749	rs139852262	CAATTA	C	4299.73	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:108,112:0.51:220
chr21	34870990	rs62226457	G	A	3205.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:147,148:0.50:295
chr21	34871107	rs140133985	ATT	A,AT	1078.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.040;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.71;MQRankSum=0.000;QD=25.09;ReadPosRankSum=-0.207;SOR=1.347;set=HC	GT:AD:AF:DP	1/2:2,13,28:0.30,0.65:43
chr21	34871133	rs7278879	C	T	674.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:12,24:0.67:36
chr21	34878450	rs2070390	A	T	2959.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:132,136:0.51:268
chr21	34878454	.	C	CT	257.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.583;ClippingRankSum=0.000;DP=254;ExcessHet=3.0103;FS=0.851;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=2.410;QD=1.50;ReadPosRankSum=0.525;SOR=0.875;set=HC	GT:AD:AF:DP	0/1:133,39:0.23:172
chr21	34883618	rs8971	T	C	4929.77	.	AC=1;AF=0.500;AN=2;DB;DP=474;set=Intersection	GT:AD:AF:DP	0/1:236,233:0.50:469
chr21	34892896	rs2834232	C	T	899.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:41,39:0.49:80
chr21	34894623	rs2834234	T	C	3286.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr21	34896962	rs1804385	C	G	350.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:21,15:0.42:36
chr21	34897113	rs8788	C	T	10826.77	.	AC=2;AF=1.00;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	1/1:0,397:1.00:397
chr21	34897391	rs35083461	C	CT	477.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.815;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=2.722;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=0.000;QD=5.69;ReadPosRankSum=0.865;SOR=1.308;set=HC	GT:AD:AF:DP	0/1:43,41:0.49:84
chr21	34900924	rs5843611	G	GA	1167.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.376;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.92;ReadPosRankSum=-0.525;SOR=0.798;set=HC	GT:AD:AF:DP	0/1:20,78:0.80:98
chr21	34901062	rs57178645	TA	T,TAA	785.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.254;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=1.002;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=6.60;ReadPosRankSum=-0.515;SOR=0.957;set=HC	GT:AD:AF:DP	1/2:20,60,39:0.50,0.33:119
chr21	34903875	.	AT	A	751.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.156;ClippingRankSum=0.000;DP=379;ExcessHet=3.0103;FS=3.533;MLEAC=1;MLEAF=0.500;MQ=60.46;MQRankSum=4.824;QD=3.15;ReadPosRankSum=-1.027;SOR=0.467;set=HC	GT:AD:AF:DP	0/1:146,93:0.39:239
chr21	34915324	rs1041745	CG	GC	6106.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr21	34924243	rs16990760	T	C	1992.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:128,90:0.41:218
chr21	34925142	rs13433428	C	T	9320.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:0,325:1.00:325
chr21	34925689	rs61739710	G	A	8952.77	.	AC=1;AF=0.500;AN=2;DB;DP=893;set=Intersection	GT:AD:AF:DP	0/1:461,423:0.48:884
chr21	34926260	rs13047599	C	T	18901.77	.	AC=2;AF=1.00;AN=2;DB;DP=707;set=Intersection	GT:AD:AF:DP	1/1:0,705:1.00:705
chr21	34927751	rs34040109	A	AT	809.73	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:59,47:0.44:106
chr21	34948684	rs34377180	G	GA	9420.73	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr21	34948696	rs34373121	GA	G	9606.73	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr21	34954602	rs77179527	AG	A	1283.73	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:39,42:0.52:81
chr21	34959776	rs7283856	G	A	1389.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr21	34968605	rs150787088	GTA	G	896.73	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:10,24:0.71:34
chr21	34969423	rs3761351	G	A	449.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:18,19:0.51:37
chr21	34985754	rs2276226	T	C	1523.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:102,74:0.42:176
chr21	35012719	rs6517185	GG	CT	2602.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr21	35094849	rs373376953	GT	G	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.114;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=4.010;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.65;ReadPosRankSum=0.411;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:14,7:0.33:21
chr21	35124253	rs2834255	A	G	2143.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr21	35134084	rs11444980	G	GC	6365.73	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr21	35174897	rs11390596	T	TA	747.73	.	AC=1;AF=0.500;AN=2;DB;DP=158;MQ=60.07;set=Intersection	GT:AD:AF:DP	0/1:79,53:0.40:132
chr21	35189433	rs201949064	A	T	1049.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:47,45:0.49:92
chr21	35206880	rs2248321	A	G	1438.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:69,60:0.47:129
chr21	35228953	rs9305535	A	G	5486.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:4,186:0.98:190
chr21	35230921	rs2073366	G	C	7038.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:1,250:1.00:251
chr21	35237349	rs9984732	A	G	3473.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr21	35237608	rs9976801	T	C	3405.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr21	35247611	rs2298681	G	A	5741.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr21	35247873	rs933130	C	G	3176.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr21	35260481	rs2073370	T	C	1423.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:146,78:0.35:224
chr21	35275955	rs9980730	G	A	14218.77	.	AC=2;AF=1.00;AN=2;DB;DP=552;set=Intersection	GT:AD:AF:DP	1/1:2,541:1.00:543
chr21	35276209	rs2834293	A	G	912.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:45,43:0.49:88
chr21	35278919	rs3831798	A	ACT	2705.73	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:57,71:0.55:128
chr21	35281393	rs4591	A	G	1538.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:90,76:0.46:166
chr21	35284734	rs2211873	A	G	2242.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.775;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=1.744;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.10;ReadPosRankSum=1.274;SOR=0.563;set=HC	GT:AD:AF:DP	0/1:98,104:0.51:202
chr21	35446123	.	CTGGCCGCGGGACCCCGGGCCT	C	2453.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.670;ClippingRankSum=0.000;DP=150;ExcessHet=3.0103;FS=2.315;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.038;QD=18.45;ReadPosRankSum=-1.087;SOR=0.909;set=HC	GT:AD:AF:DP	0/1:68,65:0.49:133
chr21	35446136	rs79607614	C	G	1351.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:65,63:0.49:128
chr21	35467372	rs11295804	AC	A	1923.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr21	35467472	rs11295803	AG	A	11949.73	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr21	35467645	rs8129891	A	G	7765.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr21	35469193	rs4817617	C	A	10686.77	.	AC=2;AF=1.00;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	1/1:1,387:1.00:388
chr21	35469708	rs35685523	G	GA	342.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr21	35514749	rs61910679	A	T	919.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:57,47:0.45:104
chr21	35742722	rs9305548	C	T	1809.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:73,74:0.50:147
chr21	35774491	rs72279748	AT	A	647.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.051;ClippingRankSum=0.000;DB;DP=405;ExcessHet=3.0103;FS=0.499;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=3.277;QD=1.89;ReadPosRankSum=1.527;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:240,102:0.30:342
chr21	35821419	rs2070357	T	C	1913.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr21	35821821	rs1805127	T	C	18194.77	.	AC=2;AF=1.00;AN=2;DB;DP=706;set=Intersection	GT:AD:AF:DP	1/1:4,699:0.99:703
chr21	35893642	rs11700452	A	G	2798.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:127,134:0.51:261
chr21	35896032	rs6517239	A	G	1151.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:59,55:0.48:114
chr21	35985895	rs915540	C	T	1179.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:75,59:0.44:134
chr21	36041978	rs7280973	A	G	786.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr21	36042203	rs9680380	G	C	637.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.043;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.67;MQRankSum=-0.299;QD=21.99;ReadPosRankSum=-0.478;SOR=0.223;set=HC	GT:AD:AF:DP	1/1:1,28:0.97:29
chr21	36079735	.	G	GCACACA	1199.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.153;ClippingRankSum=0.000;DP=68;ExcessHet=3.0103;FS=4.803;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=38.70;ReadPosRankSum=1.566;SOR=3.126;set=HC	GT:AD:AF:DP	0/1:3,28:0.90:31
chr21	36080204	rs6517253	A	G	1717.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr21	36080398	rs2070368	T	C	3679.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:2,140:0.99:142
chr21	36080444	rs142261285	AGT	A	42.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.133;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=1.429;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.51;ReadPosRankSum=0.391;SOR=0.385;set=HC	GT:AD:AF:DP	0/1:75,9:0.11:84
chr21	36080908	rs2834597	G	A	2463.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr21	36081626	rs3819041	C	G	10032.77	.	AC=2;AF=1.00;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	1/1:2,367:0.99:369
chr21	36164405	rs13051066	G	T	449.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.027;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.84;ReadPosRankSum=1.697;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:16,22:0.58:38
chr21	36165041	rs11700756	T	C	314.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:15,16:0.52:31
chr21	36193871	rs2018329	T	C	126.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:16,7:0.30:23
chr21	36206932	rs11702841	G	A	701.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.06;SOR=0.997;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr21	36253146	rs56243517	ATAACT	A	717.73	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:10,19:0.66:29
chr21	36410869	rs370849672	CCTCTCTCTCTCT	C,CCTCTCTCTCT	761.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=31.74;SOR=1.022;set=HC	GT:AD:AF:DP	1/2:0,18,6:0.75,0.25:24
chr21	36410904	rs62218494	C	G	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.755;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.68;ReadPosRankSum=2.499;SOR=1.075;set=HC	GT:AD:AF:DP	0/1:20,6:0.23:26
chr21	36410906	rs62218495	C	G	743.81	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.508;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=35.42;ReadPosRankSum=0.331;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:1,20:0.95:21
chr21	36410908	rs62218496	C	G	743.80	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.087;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=35.42;ReadPosRankSum=0.331;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:1,20:0.95:21
chr21	36410910	rs8126848	C	G	1701.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.088;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=39.58;ReadPosRankSum=0.331;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:1,42:0.98:43
chr21	36410948	rs145814354	TAG	T	595.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.056;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=4.562;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.549;QD=6.93;ReadPosRankSum=2.048;SOR=1.096;set=HC	GT:AD:AF:DP	0/1:58,28:0.33:86
chr21	36421036	rs8133634	T	C	2116.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:75,94:0.56:169
chr21	37408608	rs68024241	AACGT	A	2858.73	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr21	37412752	rs2255858	T	C	4915.77	.	AC=1;AF=0.500;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	0/1:212,226:0.52:438
chr21	37413946	rs2835243	C	T	646.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:32,33:0.51:65
chr21	37414194	rs11404455	C	CA,CAA	376.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.422;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=19.83;ReadPosRankSum=0.000;SOR=3.056;set=HC	GT:AD:AF:DP	1/2:1,8,10:0.42,0.53:19
chr21	37420445	rs76783989	A	G	933.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.406;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=2.855;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.81;ReadPosRankSum=1.307;SOR=0.416;set=HC	GT:AD:AF:DP	0/1:56,50:0.47:106
chr21	37420785	rs880221	C	T	862.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:29,36:0.55:65
chr21	37425955	rs762360	C	T	8188.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr21	37425971	rs762361	C	T	6201.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr21	37429679	rs7282629	G	C	3586.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr21	37431265	rs2051395	G	T	1625.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:75,70:0.48:145
chr21	37443156	rs113589610	T	TG	2676.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=9.744;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=40.56;ReadPosRankSum=1.328;SOR=4.300;set=HC	GT:AD:AF:DP	1/1:1,65:0.98:66
chr21	37443163	rs113287155	T	G	2806.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.151;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=16.672;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=38.98;ReadPosRankSum=1.621;SOR=3.652;set=HC	GT:AD:AF:DP	1/1:2,70:0.97:72
chr21	37443480	rs1005696	T	G	10689.77	.	AC=2;AF=1.00;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	1/1:1,375:1.00:376
chr21	37443565	rs1005695	G	C	4992.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr21	37507501	rs8133052	G	A	3144.77	.	AC=1;AF=0.500;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	0/1:209,159:0.43:368
chr21	37507745	rs881711	C	T	10776.77	.	AC=2;AF=1.00;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	1/1:0,398:1.00:398
chr21	37507769	rs881712	C	T	3931.77	.	AC=1;AF=0.500;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	0/1:181,188:0.51:369
chr21	37509995	rs12626192	C	T	609.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:18,22:0.55:40
chr21	37518362	rs2835286	A	G	1703.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr21	37518706	rs1056892	G	A	4827.77	.	AC=1;AF=0.500;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	0/1:210,232:0.52:442
chr21	37571593	rs2243723	A	G	6148.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:1,229:1.00:230
chr21	37571667	rs7281674	T	A	2891.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:1,75:0.99:76
chr21	37571692	rs2835316	G	A	2302.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr21	37580927	rs2156412	T	A	3639.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr21	37599824	rs7280662	T	G	288.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:14,15:0.52:29
chr21	37599842	rs11431401	C	CA	277.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.005;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=3.075;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.77;ReadPosRankSum=0.302;SOR=0.257;set=HC	GT:AD:AF:DP	0/1:22,19:0.46:41
chr21	37617630	rs4817788	T	G	18380.77	.	AC=2;AF=1.00;AN=2;DB;DP=703;set=Intersection	GT:AD:AF:DP	1/1:0,692:1.00:692
chr21	37617724	rs3746866	C	A	5136.77	.	AC=1;AF=0.500;AN=2;DB;DP=542;set=Intersection	GT:AD:AF:DP	0/1:285,245:0.46:530
chr21	37619724	rs1023367	C	T	11050.77	.	AC=2;AF=1.00;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	1/1:4,388:0.99:392
chr21	37619931	rs5843755	A	AT,ATT	5251.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.783;ClippingRankSum=0.000;DB;DP=395;ExcessHet=3.0103;FS=3.455;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.38;MQRankSum=0.889;QD=18.89;ReadPosRankSum=-0.249;SOR=0.378;set=HC	GT:AD:AF:DP	1/2:21,194,63:0.70,0.23:278
chr21	37623446	.	T	TC	1397.73	.	AC=1;AF=0.500;ALERT;AN=2;DP=164;set=Intersection	GT:AD:AF:DP	0/1:91,71:0.44:162
chr21	37623447	rs2298450	C	T	1556.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:73,85:0.54:158
chr21	37625935	.	C	CAAA	348.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.906;ClippingRankSum=0.000;DP=37;ExcessHet=3.0103;FS=4.925;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.25;ReadPosRankSum=0.289;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:18,13:0.42:31
chr21	37626011	rs62232368	C	T	2399.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.519;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=4.045;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.71;ReadPosRankSum=-0.185;SOR=0.971;set=HC	GT:AD:AF:DP	0/1:96,109:0.53:205
chr21	37642196	rs11700664	G	A	2573.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr21	37649170	rs7279450	A	T	256.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:15,12:0.44:27
chr21	37649427	rs375296836	T	G	4338.77	.	AC=1;AF=0.500;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	0/1:205,210:0.51:415
chr21	37650182	rs2070516	C	T	565.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:20,22:0.52:42
chr21	37650235	rs2070517	T	C	1444.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:58,57:0.50:115
chr21	37653705	rs7277281	A	G	594.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:39,31:0.44:70
chr21	37653942	rs73902193	C	T	2089.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:92,98:0.52:190
chr21	37660161	rs2268299	G	A	664.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:26,28:0.52:54
chr21	37661041	rs58117793	A	AT	611.73	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:33,37:0.53:70
chr21	37661180	rs9979272	A	G	953.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:79,45:0.36:124
chr21	37661405	rs3827183	G	A	5287.77	.	AC=1;AF=0.500;AN=2;DB;DP=524;set=Intersection	GT:AD:AF:DP	0/1:268,251:0.48:519
chr21	37664372	rs9977791	C	T	823.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:41,39:0.49:80
chr21	37664501	rs9978057	G	A	1501.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.012;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=0.622;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.035;QD=10.50;ReadPosRankSum=0.847;SOR=0.790;set=HC	GT:AD:AF:DP	0/1:73,70:0.49:143
chr21	37664554	.	C	CTT	60.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.544;ClippingRankSum=0.000;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=1.347;QD=1.41;ReadPosRankSum=-1.032;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:27,16:0.37:43
chr21	37664571	rs9978153	G	T	607.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:21,26:0.55:47
chr21	37665503	rs3989100	CA	C	534.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.754;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=0.572;QD=12.15;ReadPosRankSum=-0.557;SOR=1.542;set=HC	GT:AD:AF:DP	0/1:6,38:0.86:44
chr21	37706044	rs201071068	T	C	1136.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.595;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=1.289;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.48;ReadPosRankSum=0.722;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:88,64:0.42:152
chr21	37734540	rs143622574	CT	C	111.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.926;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=2.958;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=2.384;QD=1.89;ReadPosRankSum=1.905;SOR=0.265;set=HC	GT:AD:AF:DP	0/1:38,21:0.36:59
chr21	37749689	rs2850081	C	T	4584.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr21	37784070	rs218630	G	A	1199.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr21	37787572	.	CT	C	514.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.878;ClippingRankSum=0.000;DP=540;ExcessHet=3.0103;FS=1.348;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=1.859;QD=0.99;ReadPosRankSum=-1.910;SOR=0.817;set=HC	GT:AD:AF:DP	0/1:409,109:0.21:518
chr21	37833307	rs219780	C	T	1820.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:66,84:0.56:150
chr21	37833751	rs219779	G	A	3727.77	.	AC=1;AF=0.500;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	0/1:183,181:0.50:364
chr21	38081480	rs116988298	C	T	4375.77	.	AC=1;AF=0.500;AN=2;DB;DP=451;set=Intersection	GT:AD:AF:DP	0/1:232,217:0.48:449
chr21	38081562	rs2070647	T	G	7584.77	.	AC=1;AF=0.500;AN=2;DB;DP=462;set=Intersection	GT:AD:AF:DP	0/1:245,213:0.47:458
chr21	38081577	rs2070648	C	G	7435.77	.	AC=1;AF=0.500;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	0/1:230,194:0.46:424
chr21	38092039	rs2070650	A	C	399.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:16,15:0.48:31
chr21	38113998	rs2070519	C	A	2832.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr21	38117040	rs2073416	G	A	3841.77	.	AC=1;AF=0.500;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	0/1:191,178:0.48:369
chr21	38117505	rs2073602	C	T	3644.77	.	AC=1;AF=0.500;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	0/1:176,180:0.51:356
chr21	38128707	rs9977769	G	A	514.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:15,20:0.57:35
chr21	38131284	.	CA	C	803.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.591;ClippingRankSum=0.000;DP=127;ExcessHet=3.0103;FS=2.632;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=1.549;QD=6.70;ReadPosRankSum=-0.524;SOR=0.458;set=HC	GT:AD:AF:DP	0/1:54,66:0.55:120
chr21	38139632	rs2073421	C	A	3209.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr21	38302543	rs140568778	CA	C	3514.73	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:99,119:0.55:218
chr21	38302769	rs2073425	C	T	1365.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:94,66:0.41:160
chr21	38308911	rs1065758	G	A	5622.77	.	AC=1;AF=0.500;AN=2;DB;DP=532;set=Intersection	GT:AD:AF:DP	0/1:259,261:0.50:520
chr21	38334256	rs71724041	GA	G	343.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.701;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.51;ReadPosRankSum=0.290;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:89,48:0.35:137
chr21	38338651	rs1055699	C	T	424.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:14,12:0.46:26
chr21	38338665	rs1055700	C	G	539.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:18,15:0.45:33
chr21	38338969	rs9980304	T	C	1100.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:63,59:0.48:122
chr21	38339023	rs184468430	G	A	278.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.825;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=3.227;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.53;ReadPosRankSum=-0.216;SOR=1.483;set=HC	GT:AD:AF:DP	0/1:19,18:0.49:37
chr21	38380368	rs2277786	A	G	3992.77	.	AC=1;AF=0.500;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	0/1:170,187:0.52:357
chr21	38380656	rs56093871	G	A	419.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:16,18:0.53:34
chr21	38380676	rs57389032	ATGAGTAAGGT	A	550.73	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:14,15:0.52:29
chr21	38385680	rs11088373	C	T	1879.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:50,80:0.62:130
chr21	38439504	rs2835570	A	G	2737.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:104,122:0.54:226
chr21	38439686	rs11702061	A	G	2701.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:132,129:0.49:261
chr21	38444863	rs2507733	C	T	7350.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr21	38444881	rs73200245	G	A	2617.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:116,122:0.51:238
chr21	38444890	rs2298682	A	G	2388.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:113,111:0.50:224
chr21	38444995	rs7280542	A	G	1840.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr21	38459725	rs2835583	A	G	3236.77	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:158,163:0.51:321
chr21	38460338	rs2835584	T	A	201.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:10,9:0.47:19
chr21	38461326	rs2835586	G	A	639.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:21,30:0.59:51
chr21	38462614	rs3787780	A	G	1949.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:106,99:0.48:205
chr21	38462716	rs2835588	A	G	740.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:38,35:0.48:73
chr21	38463868	rs147677870	ATTAT	A,ATTATTTATTTAT	1047.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=38.80;SOR=3.690;set=HC	GT:AD:AF:DP	1/2:0,12,15:0.44,0.56:27
chr21	38466203	rs2835595	G	T	235.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.588;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.55;ReadPosRankSum=-0.478;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:23,13:0.36:36
chr21	38466261	rs3753070	T	A	226.73	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:22,14:0.39:36
chr21	38467857	rs2251161	C	G	1048.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:46,50:0.52:96
chr21	38468958	rs2835600	A	G	1439.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:63,67:0.52:130
chr21	38469017	rs2835601	T	G	1001.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:33,45:0.58:78
chr21	38469069	rs2835602	G	C	488.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:11,19:0.63:30
chr21	38470120	rs1108966	G	A	695.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:26,29:0.53:55
chr21	38495185	rs11440324	G	GT	3530.73	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr21	38495213	rs11440325	G	GA	3658.73	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr21	38495270	rs11440326	A	AT	6238.73	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr21	38498178	rs67628252	GT	G	405.74	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr21	38498185	rs66532388	GC	G	405.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr21	38498341	.	G	GT	349.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.335;ClippingRankSum=0.000;DP=63;ExcessHet=3.0103;FS=1.047;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=1.001;QD=5.93;ReadPosRankSum=-0.702;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:31,28:0.47:59
chr21	38501279	rs2835617	G	A	871.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.322;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.99;ReadPosRankSum=0.793;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:52,45:0.46:97
chr21	38504928	rs67638494	A	G	536.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:22,24:0.52:46
chr21	38512956	rs1133001	A	G	1339.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.272;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=0.644;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.23;ReadPosRankSum=-2.314;SOR=0.767;set=HC	GT:AD:AF:DP	0/1:61,70:0.53:131
chr21	38517058	rs764175	C	T	2279.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:67,106:0.61:173
chr21	38520031	rs372841981	AT	A	91.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.279;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.50;ReadPosRankSum=-1.705;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:43,18:0.30:61
chr21	38522353	rs35491163	GT	G	103.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.544;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=1.804;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.99;ReadPosRankSum=-0.615;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:13,13:0.50:26
chr21	38522618	rs2257091	G	T	290.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:16,14:0.47:30
chr21	38523266	rs3737540	C	A	426.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:14,19:0.58:33
chr21	38525198	rs2051162	G	A	1959.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:65,88:0.58:153
chr21	38525356	rs1053808	T	C	2080.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:117,105:0.47:222
chr21	38525652	rs767998	T	G	576.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:33,29:0.47:62
chr21	38528866	rs2835635	A	G	702.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:42,31:0.42:73
chr21	38528872	rs10706050	TG	T	3005.73	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr21	38531863	rs4817852	T	C	1798.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.47;SOR=2.030;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr21	38531863	.	TACACTTGT	CACACTTGC,CACACTTGT	565	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.26;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=23;MMLQ=26;MQ=60.0;NF=13,33;NR=6,11;PP=224,565;QD=14.6035723612;SC=GTTTCTAAACTACACTTGTGT;SbPval=0.34;Source=Platypus;TC=44;TCF=33;TCR=11;TR=19,44;WE=38531879;WS=38531853;set=Platypus	GT:AF:DP	0/1:0.43:44
chr21	38531871	rs2835636	T	C	487.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.212;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=6.760;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.76;ReadPosRankSum=-0.289;SOR=0.174;set=HC	GT:AD:AF:DP	0/1:26,24:0.48:50
chr21	38531921	rs1787365	C	A	2356.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr21	38532058	rs34771928	TG	T	9986.73	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr21	38532068	rs113972351	G	GA	8449.73	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr21	38532086	rs34586966	TG	T	10059.73	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr21	38532192	rs34367119	A	AT	2263.73	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr21	38532901	rs5843796	G	GT	854.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr21	38532904	rs5843798	T	TA	899.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.99;SOR=6.091;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr21	38532910	rs5843800	A	AG	969.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr21	38534228	rs11424055	A	AT	1605.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr21	38534234	rs57522570	C	T	1614.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr21	38537743	rs2835641	A	C	404.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:25,19:0.43:44
chr21	38539658	rs73204051	G	A	214.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:9,9:0.50:18
chr21	38539673	rs1793885	C	T	1051.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=50.08;SOR=3.816;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr21	38539677	rs4988831	A	T	1139.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.49;SOR=4.091;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr21	38539681	rs1793886	G	A	1144.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.88;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr21	38539718	rs2000413	G	A	496.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:25,23:0.48:48
chr21	38539745	rs5843802	G	GA	1486.73	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr21	38539836	rs5843803	T	TA	5519.73	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr21	38564530	rs202143959	CT	C	752.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.461;ClippingRankSum=0.000;DB;DP=270;ExcessHet=3.0103;FS=6.177;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.01;ReadPosRankSum=0.730;SOR=0.601;set=HC	GT:AD:AF:DP	0/1:167,83:0.33:250
chr21	38567902	rs2835659	C	T	2603.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.290;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=3.221;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.14;ReadPosRankSum=0.940;SOR=0.441;set=HC	GT:AD:AF:DP	0/1:103,69:0.40:172
chr21	38567911	rs7280251	T	C	2899.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.705;ClippingRankSum=0.000;DB;DP=211;ExcessHet=3.0103;FS=1.999;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.57;ReadPosRankSum=-1.141;SOR=0.526;set=HC	GT:AD:AF:DP	0/1:115,84:0.42:199
chr21	38568009	rs1053966	G	C	5814.77	.	AC=1;AF=0.500;AN=2;DB;DP=671;set=Intersection	GT:AD:AF:DP	0/1:375,287:0.43:662
chr21	38568308	rs6579	C	T	2765.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:111,128:0.54:239
chr21	38574018	rs1053984	C	T	200.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr21	38593620	rs13864	G	T	10047.77	.	AC=1;AF=0.500;AN=2;DB;DP=948;set=Intersection	GT:AD:AF:DP	0/1:465,476:0.51:941
chr21	38599934	rs11300896	TG	T	6374.73	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr21	38600154	rs10716173	CG	C	1957.73	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr21	38604570	rs2835680	C	T	214.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:14,9:0.39:23
chr21	38604600	rs2835681	C	G	312.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:22,17:0.44:39
chr21	38850640	rs928763	G	A	7949.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr21	38858938	rs55650427	G	A	2041.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:136,107:0.44:243
chr21	38862862	rs67837743	C	T	970.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr21	38865507	rs2835772	C	G	1960.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:82,89:0.52:171
chr21	38997701	rs702859	G	A	6414.77	.	AC=1;AF=0.500;AN=2;DB;DP=534;set=Intersection	GT:AD:AF:DP	0/1:227,293:0.56:520
chr21	39086965	rs2070995	T	C	9747.77	.	AC=2;AF=1.00;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	1/1:0,362:1.00:362
chr21	39089582	rs857961	A	G	1898.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr21	39212857	rs55948847	A	G	2349.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:150,117:0.44:267
chr21	39325234	rs2836061	C	T	2851.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:139,137:0.50:276
chr21	39671476	rs2230033	G	A	4574.77	.	AC=1;AF=0.500;AN=2;DB;DP=522;set=Intersection	GT:AD:AF:DP	0/1:296,223:0.43:519
chr21	39739478	rs62217874	A	G	589.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:49,29:0.37:78
chr21	39739665	rs2836346	T	A	9173.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:0,348:1.00:348
chr21	39764211	rs2836359	T	A	8489.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:0,319:1.00:319
chr21	39764437	rs2836360	T	C	1267.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr21	39774592	.	G	GA	93.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.038;ClippingRankSum=0.000;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.37;MQRankSum=1.529;QD=2.34;ReadPosRankSum=1.999;SOR=0.857;set=HC	GT:AD:AF:DP	0/1:28,12:0.30:40
chr21	39775373	rs2836373	A	G	1439.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr21	39818923	rs2836409	G	C	4159.77	.	AC=1;AF=0.500;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	0/1:163,205:0.56:368
chr21	39822650	rs2211871	G	T	1407.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr21	39822906	rs9305648	G	C	10363.77	.	AC=2;AF=1.00;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	1/1:0,372:1.00:372
chr21	39823349	rs2051165	T	C	765.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:22,30:0.58:52
chr21	39870310	rs2836441	G	A	2720.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr21	40190620	rs10854389	C	G	1836.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:95,84:0.47:179
chr21	40191431	rs457705	T	G	11973.77	.	AC=2;AF=1.00;AN=2;DB;DP=460;set=Intersection	GT:AD:AF:DP	1/1:0,454:1.00:454
chr21	40191638	rs461155	A	G	9264.77	.	AC=2;AF=1.00;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	1/1:0,340:1.00:340
chr21	40547387	rs9305670	A	G	1549.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr21	40547746	rs80179792	T	C	606.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:23,29:0.56:52
chr21	40549289	rs2142111	G	C	1807.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr21	40549466	rs14194	T	C	4199.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr21	40551943	rs34227163	A	G	25314.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=576;set=Intersection	GT:AD:AF:DP	1/1:1,569:1.00:570
chr21	40551944	rs3835285	G	GT	25306.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=576;set=Intersection	GT:AD:AF:DP	1/1:1,569:1.00:570
chr21	40552408	rs7280375	A	G	3012.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr21	40553845	rs6517522	T	C	1277.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr21	40555160	rs34294410	C	G	12905.77	.	AC=2;AF=1.00;AN=2;DB;DP=498;MQ=60.02;set=Intersection	GT:AD:AF:DP	1/1:0,491:1.00:491
chr21	40555351	rs13052882	G	C	11297.77	.	AC=2;AF=1.00;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	1/1:0,420:1.00:420
chr21	40571246	rs1041439	A	G	15465.77	.	AC=2;AF=1.00;AN=2;DB;DP=565;set=Intersection	GT:AD:AF:DP	1/1:0,555:1.00:555
chr21	40572072	rs2234543	G	A	1308.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr21	40582181	rs35580733	TAG	T	785.73	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:22,22:0.50:44
chr21	40584598	rs6517529	C	T	3823.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr21	40587003	rs11434832	G	GC	1093.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr21	40587049	rs4818004	A	G	1405.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr21	40590624	rs35571600	A	C	6214.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr21	40597215	rs139986112	A	AAAG	6724.73	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr21	40600313	rs11702268	T	C	1241.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr21	40619887	rs2836955	G	A	2671.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr21	40636354	.	TAAAA	T,TA	1596.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.331;ClippingRankSum=0.000;DP=132;ExcessHet=3.0103;FS=6.019;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=13.53;ReadPosRankSum=0.988;SOR=0.132;set=HC	GT:AD:AF:DP	1/2:11,35,72:0.30,0.61:118
chr21	40637047	.	G	GA	289.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.801;ClippingRankSum=0.000;DP=171;ExcessHet=3.0103;FS=0.957;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=2.713;QD=2.18;ReadPosRankSum=1.242;SOR=0.524;set=HC	GT:AD:AF:DP	0/1:95,38:0.29:133
chr21	40642189	rs6517532	C	T	3312.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr21	40642386	rs2836968	A	G	1643.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr21	40646230	.	CGAGA	C,CGA	5772.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.738;ClippingRankSum=0.000;DP=226;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.48;MQRankSum=0.554;QD=30.07;ReadPosRankSum=-0.715;SOR=0.927;set=HC	GT:AD:AF:DP	1/2:5,48,139:0.25,0.72:192
chr21	40648065	rs149667995	AAC	A	229.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.338;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=0.877;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.42;ReadPosRankSum=0.433;SOR=0.580;set=HC	GT:AD:AF:DP	0/1:141,21:0.13:162
chr21	40650621	rs973521	G	A	5032.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr21	40650627	.	T	TA	154.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.994;ClippingRankSum=0.000;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=3.016;QD=0.94;ReadPosRankSum=-1.917;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:132,33:0.20:165
chr21	40652142	rs2836972	G	A	13589.77	.	AC=2;AF=1.00;AN=2;DB;DP=521;set=Intersection	GT:AD:AF:DP	1/1:3,515:0.99:518
chr21	40684641	rs2272578	C	G	617.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr21	40684861	rs2297258	C	G	966.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr21	40684901	rs71316130	G	C	665.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.16;SOR=5.784;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr21	40684904	rs71316131	C	G	665.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.16;SOR=5.784;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr21	40685135	rs118102968	A	G	869.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:46,43:0.48:89
chr21	40685515	rs148082602	GCGC	G	1052.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;MQ=60.33;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr21	40715132	rs2070867	G	A	3777.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr21	40715175	rs2776308	A	G	2007.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr21	40719241	rs2249666	C	T	447.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr21	40721611	rs2735313	A	C	383.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:23,19:0.45:42
chr21	40769017	rs1060180	G	T	507.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:23,23:0.50:46
chr21	40778182	rs11558767	C	T	4540.77	.	AC=1;AF=0.500;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	0/1:251,211:0.46:462
chr21	40799955	rs2837028	A	C	580.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr21	40800371	rs2837029	C	T	4200.77	.	AC=1;AF=0.500;AN=2;DB;DP=532;set=Intersection	GT:AD:AF:DP	0/1:302,214:0.41:516
chr21	40823902	rs11575939	C	G	3943.77	.	AC=1;AF=0.500;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	0/1:178,186:0.51:364
chr21	40823981	rs6517549	G	A	11431.77	.	AC=2;AF=1.00;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	1/1:0,434:1.00:434
chr21	40824161	rs2837037	C	T	1775.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:76,82:0.52:158
chr21	40847011	rs874221	T	C	557.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:37,25:0.40:62
chr21	40847196	rs940625	A	G	3149.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:162,155:0.49:317
chr21	40847249	rs760284	T	G	4852.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr21	40871690	.	G	GT	61.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.546;ClippingRankSum=0.000;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.95;ReadPosRankSum=0.198;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:49,16:0.25:65
chr21	40871810	rs9974333	T	C	1929.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:92,94:0.51:186
chr21	40880881	rs138818478	CTTGAA	C	1864.73	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:51,49:0.49:100
chr21	40883671	rs3831201	G	GAGA	1561.73	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:42,42:0.50:84
chr21	40969620	rs2091883	G	A	1265.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:44,50:0.53:94
chr21	40969621	rs661650	C	T	1042.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:51,44:0.46:95
chr21	40969826	rs662571	G	C	20263.77	.	AC=2;AF=1.00;AN=2;DB;DP=750;set=Intersection	GT:AD:AF:DP	1/1:1,739:1.00:740
chr21	40977763	rs73360110	C	T	1085.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:45,44:0.49:89
chr21	40977826	rs506382	A	G	2135.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:121,108:0.47:229
chr21	40978115	rs78905016	C	T	3329.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:157,145:0.48:302
chr21	41032740	rs3746887	T	C	14513.77	.	AC=2;AF=1.00;AN=2;DB;DP=556;set=Intersection	GT:AD:AF:DP	1/1:0,550:1.00:550
chr21	41032804	rs734413	G	A	13996.77	.	AC=2;AF=1.00;AN=2;DB;DP=511;set=Intersection	GT:AD:AF:DP	1/1:0,504:1.00:504
chr21	41117368	rs403527	G	A	1296.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr21	41117533	rs425320	T	C	2992.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr21	41137362	rs9784201	A	C	1709.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:52,70:0.57:122
chr21	41137416	rs8129909	T	C	3546.77	.	AC=1;AF=0.500;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	0/1:184,173:0.48:357
chr21	41137457	rs11308937	TC	T	8318.73	.	AC=1;AF=0.500;AN=2;DB;DP=567;set=Intersection	GT:AD:AF:DP	0/1:288,272:0.49:560
chr21	41137507	rs2205204	G	C	8358.77	.	AC=1;AF=0.500;AN=2;DB;DP=791;set=Intersection	GT:AD:AF:DP	0/1:388,397:0.51:785
chr21	41142775	rs73217279	A	G	124.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.269;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=3.358;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.60;ReadPosRankSum=0.067;SOR=0.132;set=HC	GT:AD:AF:DP	0/1:7,6:0.46:13
chr21	41142803	rs2837199	T	C	344.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:13,16:0.55:29
chr21	41142932	rs8129968	C	T	1405.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:62,66:0.52:128
chr21	41142940	rs2837200	G	A	1333.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:67,64:0.49:131
chr21	41143246	rs62237180	G	C	636.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:27,27:0.50:54
chr21	41160242	rs456818	A	G	1231.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:50,58:0.54:108
chr21	41165301	rs464574	A	G	1236.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:36,45:0.56:81
chr21	41165566	rs460504	T	C	6361.77	.	AC=1;AF=0.500;AN=2;DB;DP=598;set=Intersection	GT:AD:AF:DP	0/1:298,289:0.49:587
chr21	41165677	rs463903	G	A	975.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:40,43:0.52:83
chr21	41270521	rs2075719	C	A	1559.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:56,68:0.55:124
chr21	41297873	rs2037920	G	A	4388.77	.	AC=1;AF=0.500;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	0/1:167,199:0.54:366
chr21	41297992	rs2037921	C	T	7821.77	.	AC=1;AF=0.500;AN=2;DB;DP=781;set=Intersection	GT:AD:AF:DP	0/1:384,385:0.50:769
chr21	41384834	rs35506939	C	CTT	1157.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.048;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.73;MQRankSum=0.436;QD=26.31;ReadPosRankSum=1.516;SOR=3.193;set=HC	GT:AD:AF:DP	1/1:1,43:0.98:44
chr21	41416066	rs16999204	C	T	1518.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:71,70:0.50:141
chr21	41423812	rs11911000	G	T	4087.77	.	AC=1;AF=0.500;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	0/1:247,200:0.45:447
chr21	41434671	rs2837408	T	C	758.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr21	41434841	rs2837409	T	C	3301.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr21	41446936	rs7275294	G	A	710.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:71,37:0.34:108
chr21	41447058	rs7275460	G	C	3376.77	.	AC=1;AF=0.500;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	0/1:204,169:0.45:373
chr21	41447313	rs378877	C	T	304.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:12,12:0.50:24
chr21	41455854	rs2297263	G	A	941.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:87,50:0.36:137
chr21	41506058	rs403892	A	G	885.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:27,36:0.57:63
chr21	41514421	rs11701139	G	C	2239.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:2,79:0.98:81
chr21	41514688	rs35155500	TA	T	3078.73	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr21	42539569	rs11316732	AC	A	2973.73	.	AC=1;AF=0.500;AN=2;DB;DP=294;MQ=60.11;set=Intersection	GT:AD:AF:DP	0/1:161,121:0.43:282
chr21	42615293	rs2252576	C	T	1136.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:55,54:0.50:109
chr21	42622657	rs960231	G	C	1232.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:41,53:0.56:94
chr21	42717662	rs417708	T	C	5321.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=0.986;set=HC	GT:AD:AF:DP	1/1:0,207:1.00:207
chr21	42762646	rs145689273	C	A	1207.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:38,49:0.56:87
chr21	42767733	rs440364	T	C	752.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:32,34:0.52:66
chr21	42771092	rs370472968	G	A	1929.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:90,92:0.51:182
chr21	42775179	rs112479250	G	GT	1880.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:161,114:0.41:275
chr21	42775180	rs459763	C	T	4249.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:163,117:0.42:280
chr21	42775555	rs462161	A	G	12580.77	.	AC=2;AF=1.00;AN=2;DB;DP=468;set=Intersection	GT:AD:AF:DP	1/1:0,460:1.00:460
chr21	42803840	rs456657	C	T	807.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:28,33:0.54:61
chr21	42803858	rs463856	A	G	927.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:35,44:0.56:79
chr21	42808015	rs468207	A	G	4475.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:2,168:0.99:170
chr21	42808054	rs468451	C	G	1121.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:33,46:0.58:79
chr21	42809206	rs468646	A	C	1263.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:72,54:0.43:126
chr21	42812891	rs467960	C	T	5978.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr21	42813933	rs145807679	A	AGTGT,AGTGTGT	1717.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=61;set=Intersection	GT:AF:DP	1/2:0.29,0.71:41
chr21	42817582	rs469288	A	G	971.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr21	42817612	rs469382	G	A	456.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:5,19:0.79:24
chr21	42817930	rs469390	G	A	6867.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr21	42818106	rs467773	C	T	3189.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr21	42818132	rs364199	A	G	2234.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr21	42824733	rs469304	G	A	6824.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:2,249:0.99:251
chr21	42824874	rs467798	C	T	1825.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr21	42838138	rs73905370	A	T	1138.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:33,48:0.59:81
chr21	42838198	rs55896064	G	A	451.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:18,19:0.51:37
chr21	42839502	.	A	G	296.77	.	AC=1;AF=0.500;AN=2;DP=29;set=Intersection	GT:AD:AF:DP	0/1:16,13:0.45:29
chr21	42840580	rs462321	T	C	503.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:18,20:0.53:38
chr21	42842713	rs112132031	C	CCTAAGGCCTCGGG	4265.73	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr21	42843960	rs464431	A	G	3164.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.59;SOR=2.419;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr21	42843960	.	AGT	GGA,GGT	751	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.36;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=7;MMLQ=24;MQ=60.0;NF=9,14;NR=30,54;PP=751,501;QD=20.6273814067;SC=CAGAGCTCTCAGTGGATGAAC;SbPval=0.47;Source=Platypus;TC=69;TCF=15;TCR=54;TR=39,68;WE=42843970;WS=42843950;set=Platypus	GT:AF:DP	0/1:0.57:69
chr21	42843962	rs458213	T	A	1203.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.449;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=2.293;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.86;ReadPosRankSum=1.022;SOR=0.410;set=HC	GT:AD:AF:DP	0/1:33,48:0.59:81
chr21	42845374	rs2298659	G	A	1791.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:92,90:0.49:182
chr21	42845383	rs17854725	A	G	2021.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:95,96:0.50:191
chr21	42848560	rs140530035	CAG	C	15402.73	.	AC=2;AF=1.00;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	1/1:0,347:1.00:347
chr21	42848684	rs9985159	C	T	757.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:21,31:0.60:52
chr21	42852320	rs734056	C	A	2241.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:59,94:0.61:153
chr21	42852497	rs12329760	C	T	4921.77	.	AC=1;AF=0.500;AN=2;DB;DP=602;set=Intersection	GT:AD:AF:DP	0/1:335,260:0.44:595
chr21	42860307	rs422471	C	T	862.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:43,42:0.49:85
chr21	42860485	rs386416	G	C	1741.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:89,83:0.48:172
chr21	42860494	rs3819138	C	G	1594.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:75,78:0.51:153
chr21	42860593	rs3787947	C	T	439.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.380;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=5.136;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.89;ReadPosRankSum=0.395;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:14,23:0.62:37
chr21	42879806	.	A	G	1210.77	.	AC=1;AF=0.500;AN=2;DP=139;set=Intersection	GT:AD:AF:DP	0/1:74,61:0.45:135
chr21	42879909	rs75603675	C	A	2792.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.005;ClippingRankSum=0.000;DB;DP=283;ExcessHet=3.0103;FS=0.902;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.97;ReadPosRankSum=0.283;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:141,139:0.50:280
chr21	43132878	rs11701067	T	A	1208.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.167;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=4.511;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.99;ReadPosRankSum=-1.167;SOR=1.268;set=HC	GT:AD:AF:DP	0/1:55,66:0.55:121
chr21	43133145	rs6586229	A	G	2649.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:152,124:0.45:276
chr21	43133243	rs138319143	ATTT	A	446.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.707;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=1.112;QD=10.39;ReadPosRankSum=-1.854;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:24,19:0.44:43
chr21	43133829	rs2838096	A	G	461.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:20,21:0.51:41
chr21	43161022	rs7276592	C	T	1787.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:86,80:0.48:166
chr21	43161357	rs3746891	T	C	12545.77	.	AC=2;AF=1.00;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	1/1:2,468:1.00:470
chr21	43161805	rs2838113	G	A	6999.77	.	AC=1;AF=0.500;AN=2;DB;DP=688;set=Intersection	GT:AD:AF:DP	0/1:353,334:0.49:687
chr21	43161877	rs3746893	C	T	8063.77	.	AC=1;AF=0.500;AN=2;DB;DP=764;set=Intersection	GT:AD:AF:DP	0/1:374,386:0.51:760
chr21	43162150	rs3746894	G	A	3180.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:151,149:0.50:300
chr21	43162200	rs3746895	T	C	2007.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:85,91:0.52:176
chr21	43164232	rs2277789	C	A	1856.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:121,92:0.43:213
chr21	43164345	rs2277790	A	C	414.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:18,17:0.49:35
chr21	43177124	rs59885183	C	T	551.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:23,24:0.51:47
chr21	43221483	rs3850706	A	G	8866.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr21	43221826	rs2236696	T	C	3087.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:165,144:0.47:309
chr21	43222779	rs2838128	A	G	1815.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:84,72:0.46:156
chr21	43223126	rs62216222	C	T	541.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:35,24:0.41:59
chr21	43224567	rs62216227	C	T	1144.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:81,55:0.40:136
chr21	43224683	rs2298687	A	G	2428.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:183,127:0.41:310
chr21	43231296	rs28461265	A	T	3951.77	.	AC=1;AF=0.500;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	0/1:172,188:0.52:360
chr21	43231342	rs28484650	C	T	1833.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:89,80:0.47:169
chr21	43236252	rs28657504	A	G	9176.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	1/1:0,334:1.00:334
chr21	43239972	rs28477638	A	G	14780.77	.	AC=2;AF=1.00;AN=2;DB;DP=567;set=Intersection	GT:AD:AF:DP	1/1:0,562:1.00:562
chr21	43242207	rs28360603	G	A	1143.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:49,49:0.50:98
chr21	43243585	rs28545527	A	G	2739.77	.	AC=1;AF=0.500;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	0/1:197,140:0.42:337
chr21	43243852	rs73357703	G	A	406.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:29,19:0.40:48
chr21	43246223	rs28559700	C	T	4308.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr21	43246495	rs28473463	T	G	4041.77	.	AC=1;AF=0.500;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	0/1:173,187:0.52:360
chr21	43254463	rs2839388	A	G	2978.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:119,125:0.51:244
chr21	43254623	rs113774580	C	G	4959.77	.	AC=1;AF=0.500;AN=2;DB;DP=538;set=Intersection	GT:AD:AF:DP	0/1:282,251:0.47:533
chr21	43255359	rs2839391	G	C	979.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:32,40:0.56:72
chr21	43255509	rs2839392	C	T	4490.77	.	AC=1;AF=0.500;AN=2;DB;DP=491;set=Intersection	GT:AD:AF:DP	0/1:261,221:0.46:482
chr21	43255727	rs2839393	T	G	1034.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:62,45:0.42:107
chr21	43256252	rs4920098	C	T	2414.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:146,122:0.46:268
chr21	43256438	rs4920101	T	A	886.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;MQ=60.11;set=Intersection	GT:AD:AF:DP	0/1:55,37:0.40:92
chr21	43256548	rs3216763	C	CT	649.73	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:27,21:0.44:48
chr21	43258000	rs8127003	T	C	4067.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr21	43258353	rs6586335	G	A	511.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:34,23:0.40:57
chr21	43267260	rs2277793	C	T	2857.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:116,140:0.55:256
chr21	43274693	rs140468382	C	T	2282.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:151,115:0.43:266
chr21	43277279	rs3833355	C	CT	3912.73	.	AC=1;AF=0.500;AN=2;DB;DP=324;MQ=60.03;set=Intersection	GT:AD:AF:DP	0/1:153,167:0.52:320
chr21	43298715	rs62214725	C	T	2435.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:117,122:0.51:239
chr21	43298954	rs202107842	C	CG	1009.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.55;SOR=3.126;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr21	43299261	rs112381381	G	A	489.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.975;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=5.957;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.80;ReadPosRankSum=-0.342;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:22,28:0.56:50
chr21	43299327	rs185321045	C	A	282.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.306;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=2.678;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.15;ReadPosRankSum=-0.500;SOR=1.276;set=HC	GT:AD:AF:DP	0/1:26,20:0.43:46
chr21	43309191	rs2839403	A	G	110.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:11,7:0.39:18
chr21	43315057	rs2839411	C	T	2755.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:113,130:0.53:243
chr21	43325742	rs35279709	CA	C	2014.73	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:81,72:0.47:153
chr21	43327856	rs3746906	A	G	5413.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:2,194:0.99:196
chr21	43329784	rs58643923	T	A	339.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:11,14:0.56:25
chr21	43332605	rs201192263	T	TA	460.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.074;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=3.917;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.89;ReadPosRankSum=0.702;SOR=0.169;set=HC	GT:AD:AF:DP	0/1:16,13:0.45:29
chr21	43332608	rs11387062	T	TA	460.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.825;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=3.917;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.89;ReadPosRankSum=0.439;SOR=0.169;set=HC	GT:AD:AF:DP	0/1:16,13:0.45:29
chr21	43332611	rs11387061	T	TA	454.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.912;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=3.876;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.24;ReadPosRankSum=-0.115;SOR=0.193;set=HC	GT:AD:AF:DP	0/1:15,13:0.46:28
chr21	43332623	rs2026283	A	G	497.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.074;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=3.471;MLEAC=1;MLEAF=0.500;MQ=59.12;MQRankSum=1.441;QD=17.16;ReadPosRankSum=-1.314;SOR=0.252;set=HC	GT:AD:AF:DP	0/1:15,14:0.48:29
chr21	43334896	rs3746908	A	G	4750.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr21	43338175	rs3827223	C	T	1655.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:72,78:0.52:150
chr21	43338400	rs2245036	C	T	630.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:45,30:0.40:75
chr21	43338933	rs12483229	A	T	1727.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:46,69:0.60:115
chr21	43338948	rs2245127	A	C	2243.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:61,94:0.61:155
chr21	43339143	rs10681050	C	CTGTG	6153.73	.	AC=1;AF=0.500;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	0/1:153,158:0.51:311
chr21	43339154	rs2277796	T	C	5959.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:153,150:0.50:303
chr21	43342046	rs3746909	G	A	2698.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:125,133:0.52:258
chr21	43342269	.	C	CT	110.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.049;ClippingRankSum=0.000;DP=55;ExcessHet=3.0103;FS=2.594;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.36;ReadPosRankSum=2.173;SOR=1.646;set=HC	GT:AD:AF:DP	0/1:25,8:0.24:33
chr21	43342272	rs9974090	C	T	169.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.283;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=9.332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.99;ReadPosRankSum=0.000;SOR=3.258;set=HC	GT:AD:AF:DP	0/1:25,9:0.26:34
chr21	43373409	rs112301094	G	A	3865.77	.	AC=1;AF=0.500;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	0/1:152,177:0.54:329
chr21	43411533	rs372053446	G	A	4170.77	.	AC=1;AF=0.500;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	0/1:172,190:0.52:362
chr21	43412741	rs79977760	C	T	4021.77	.	AC=1;AF=0.500;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	0/1:209,188:0.47:397
chr21	43413731	rs915837	C	T	5966.77	.	AC=1;AF=0.500;AN=2;DB;DP=579;set=Intersection	GT:AD:AF:DP	0/1:286,280:0.49:566
chr21	43496017	rs220285	C	G	951.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:52,43:0.45:95
chr21	43496381	rs220286	G	T	2705.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:139,128:0.48:267
chr21	43504228	rs7278485	T	C	3841.77	.	AC=1;AF=0.500;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	0/1:225,197:0.47:422
chr21	43506485	rs749020	A	G	218.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:4,10:0.71:14
chr21	43510427	rs67055914	T	C	2102.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.102;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=1.325;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.11;ReadPosRankSum=-0.031;SOR=0.554;set=HC	GT:AD:AF:DP	0/1:91,58:0.39:149
chr21	43510437	rs17114359	A	C	2034.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.333;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=0.625;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.75;ReadPosRankSum=0.543;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:91,57:0.39:148
chr21	43513989	rs34421316	C	T	8571.77	.	AC=1;AF=0.500;AN=2;DB;DP=873;set=Intersection	GT:AD:AF:DP	0/1:455,408:0.47:863
chr21	43519032	rs220312	G	A	1780.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:84,90:0.52:174
chr21	43521647	rs66994219	G	A	3079.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:152,138:0.48:290
chr21	43521902	rs12483409	G	A	3301.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:134,140:0.51:274
chr21	43522349	rs220109	T	C	15864.77	.	AC=2;AF=1.00;AN=2;DB;DP=619;set=Intersection	GT:AD:AF:DP	1/1:0,606:1.00:606
chr21	43523941	rs220111	C	A	5862.77	.	AC=1;AF=0.500;AN=2;DB;DP=626;set=Intersection	GT:AD:AF:DP	0/1:339,284:0.46:623
chr21	43523972	rs11701371	G	C	6291.77	.	AC=1;AF=0.500;AN=2;DB;DP=591;set=Intersection	GT:AD:AF:DP	0/1:285,305:0.52:590
chr21	43529515	rs220120	G	C	2391.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr21	43529548	rs35742122	A	AG	5591.73	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr21	43529642	rs8127300	A	C	3441.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:170,161:0.49:331
chr21	43529652	rs11371744	A	AC	5256.73	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:173,156:0.47:329
chr21	43529819	rs11203186	G	A	1179.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:43,50:0.54:93
chr21	43530856	rs2051401	G	A	1091.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:30,44:0.59:74
chr21	43530897	rs220125	G	A	1630.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:90,76:0.46:166
chr21	43531008	rs220126	T	C	12953.77	.	AC=2;AF=1.00;AN=2;DB;DP=487;set=Intersection	GT:AD:AF:DP	1/1:1,481:1.00:482
chr21	43531403	rs220127	C	G	6719.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:1,228:1.00:229
chr21	43531553	rs220128	A	C	10426.77	.	AC=1;AF=0.500;AN=2;DB;DP=933;set=Intersection	GT:AD:AF:DP	0/1:465,464:0.50:929
chr21	43531632	rs220129	T	C	34803.77	.	AC=2;AF=1.00;AN=2;DB;DP=1296;set=Intersection	GT:AD:AF:DP	1/1:2,1283:1.00:1285
chr21	43531808	rs220130	A	C	8268.77	.	AC=1;AF=0.500;AN=2;DB;DP=793;set=Intersection	GT:AD:AF:DP	0/1:405,378:0.48:783
chr21	43531848	rs220131	C	T	5009.77	.	AC=1;AF=0.500;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	0/1:200,230:0.53:430
chr21	43534075	rs55981015	C	T	486.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:24,21:0.47:45
chr21	43539293	rs220146	G	A	3351.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:123,152:0.55:275
chr21	43539523	rs220147	C	T	1477.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr21	43541342	rs220150	C	T	4397.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr21	43541478	rs113281382	C	CGT	406.73	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:13,15:0.54:28
chr21	43546509	rs111996953	G	A	9336.77	.	AC=1;AF=0.500;AN=2;DB;DP=962;set=Intersection	GT:AD:AF:DP	0/1:503,452:0.47:955
chr21	43546705	rs220157	T	C	3012.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr21	43547788	rs220158	T	C	4396.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr21	43547873	rs220159	G	A	8498.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr21	43557494	rs3819140	A	G	756.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:34,28:0.45:62
chr21	43557559	rs3819141	T	A	1897.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:74,87:0.54:161
chr21	43557736	rs220178	G	A	5235.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:1,192:0.99:193
chr21	43557778	.	C	T	541	.	AC=1;AF=0.500;AN=2;BRF=0.35;FR=0.5000;HP=1;HapScore=2;MGOF=31;MMLQ=28;MQ=58.89;NF=9;NR=22;PP=541;QD=18.5732649209;SC=GTGGGAGGTGCAGGCTGACAG;SbPval=0.6;Source=Platypus;TC=63;TCF=19;TCR=44;TR=31;WE=43557786;WS=43557768;set=Platypus	GT:AD:AF:DP	0/1:32,31:0.49:63
chr21	43704650	rs2234719	C	T	4053.77	.	AC=1;AF=0.500;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	0/1:199,192:0.49:391
chr21	43766560	rs225334	G	A	5493.77	.	AC=1;AF=0.500;AN=2;DB;DP=544;set=Intersection	GT:AD:AF:DP	0/1:264,270:0.51:534
chr21	43769909	rs34333540	G	A	1419.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr21	43770926	rs5844113	CT	C	1315.73	.	AC=2;AF=1.00;AN=2;DB;DP=76;MQ=60.14;set=Intersection	GT:AD:AF:DP	1/1:3,70:0.96:73
chr21	43786512	rs225358	C	T	6529.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr21	43792869	rs13047838	C	T	2521.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.301;ClippingRankSum=0.000;DB;DP=230;ExcessHet=3.0103;FS=2.924;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.06;ReadPosRankSum=0.508;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:106,122:0.54:228
chr21	43795697	rs2839493	G	A	1030.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:69,49:0.42:118
chr21	43796913	rs1078272	T	A	519.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:29,23:0.44:52
chr21	43802775	rs9984719	C	A	312.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:19,15:0.44:34
chr21	43803167	rs2839500	T	C	4382.77	.	AC=1;AF=0.500;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	0/1:208,215:0.51:423
chr21	43803308	rs56283966	C	CTA	6676.73	.	AC=1;AF=0.500;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	0/1:208,178:0.46:386
chr21	43803412	rs8129105	T	C	822.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:49,40:0.45:89
chr21	43804265	rs10623444	C	CA	60.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.494;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.89;ReadPosRankSum=-0.655;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:11,10:0.48:21
chr21	43805656	rs8130564	T	C	4903.77	.	AC=1;AF=0.500;AN=2;DB;DP=522;set=Intersection	GT:AD:AF:DP	0/1:267,243:0.48:510
chr21	43808964	rs225432	T	A	712.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr21	43815584	rs4920100	C	G	1552.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:142,85:0.37:227
chr21	43824106	rs2277798	A	G	2483.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:87,114:0.57:201
chr21	43852146	rs58639264	A	G	556.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:33,28:0.46:61
chr21	43852160	rs2839512	A	G	557.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:43,29:0.40:72
chr21	43852232	rs13052676	C	T	2086.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:100,101:0.50:201
chr21	43852355	rs2839513	T	C	3795.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:138,181:0.57:319
chr21	43855067	rs1893592	A	C	2546.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:114,122:0.52:236
chr21	43862466	rs2254368	G	A	462.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:32,21:0.40:53
chr21	43863521	rs868092	A	G	3144.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:166,143:0.46:309
chr21	43864519	rs4920104	G	A	553.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:16,23:0.59:39
chr21	43864876	.	G	A	1006.77	.	AC=1;AF=0.500;AN=2;DP=89;set=Intersection	GT:AD:AF:DP	0/1:39,48:0.55:87
chr21	43867059	rs3827232	C	T	581.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:22,24:0.52:46
chr21	43892775	rs11203205	G	A	1711.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr21	43892875	rs1043807	G	A	5300.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr21	43897355	rs11702140	C	T	791.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:2,29:0.94:31
chr21	43988457	rs35343162	T	C	6188.77	.	AC=1;AF=0.500;AN=2;DB;DP=611;set=Intersection	GT:AD:AF:DP	0/1:307,299:0.49:606
chr21	44107989	rs2839574	A	G	3941.77	.	AC=1;AF=0.500;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	0/1:209,196:0.48:405
chr21	44108228	rs13046426	A	G	1827.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:94,80:0.46:174
chr21	44108243	rs13047947	C	G	1395.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:74,58:0.44:132
chr21	44118958	rs1515755	T	A	695.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.041;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=5.206;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.66;ReadPosRankSum=-1.232;SOR=1.488;set=HC	GT:AD:AF:DP	0/1:41,31:0.43:72
chr21	44163839	rs6586344	A	G	4350.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:1,172:0.99:173
chr21	44171132	rs35998613	T	C	3102.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:116,142:0.55:258
chr21	44173971	rs57957426	CA	C	555.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.431;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=0.972;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=0.901;QD=6.95;ReadPosRankSum=-0.172;SOR=0.915;set=HC	GT:AD:AF:DP	0/1:28,52:0.65:80
chr21	44174275	rs4919999	T	C	477.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.695;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=0.000;QD=10.17;ReadPosRankSum=1.837;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:26,21:0.45:47
chr21	44178992	rs11702144	A	G	1030.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:30,38:0.56:68
chr21	44180443	rs13047953	C	T	8101.77	.	AC=1;AF=0.500;AN=2;DB;DP=824;set=Intersection	GT:AD:AF:DP	0/1:424,397:0.48:821
chr21	44180613	rs36047365	G	A	2729.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:101,102:0.50:203
chr21	44180866	rs55905735	ACC	A,AC	2470.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.69;QD=33.39;SOR=1.371;set=HC	GT:AD:AF:DP	1/2:0,50,24:0.68,0.32:74
chr21	44180916	rs1547379	G	A	2591.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:152,126:0.45:278
chr21	44185794	rs2284970	TC	GA	844.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;JOINED;set=Intersection	GT:AD:AF:DP	0/1:16,22:0.58:38
chr21	44188175	rs9982811	AG	GC	1059.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;JOINED;set=Intersection	GT:AD:AF:DP	0/1:39,28:0.42:67
chr21	44188249	rs68104891	GC	G	2112.73	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:97,75:0.44:172
chr21	44188475	rs34734386	C	CA	3082.73	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:81,82:0.50:163
chr21	44188485	rs2284977	T	A	2889.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:61,72:0.54:133
chr21	44189329	rs13046985	A	G	4818.77	.	AC=1;AF=0.500;AN=2;DB;DP=533;set=Intersection	GT:AD:AF:DP	0/1:291,237:0.45:528
chr21	44189376	rs34742413	C	T	3569.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:140,169:0.55:309
chr21	44189406	rs13048617	C	T	2029.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:97,93:0.49:190
chr21	44189440	rs13048632	C	T	986.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:55,45:0.45:100
chr21	44195374	rs9637296	G	A	2728.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.016;ClippingRankSum=0.000;DB;DP=309;ExcessHet=3.0103;FS=0.418;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.98;ReadPosRankSum=-0.176;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:165,139:0.46:304
chr21	44270402	rs6586251	C	G	796.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:50,39:0.44:89
chr21	44273858	rs15736	G	A	6486.77	.	AC=1;AF=0.500;AN=2;DB;DP=634;set=Intersection	GT:AD:AF:DP	0/1:318,308:0.49:626
chr21	44274642	rs2298666	G	A	1855.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:78,83:0.52:161
chr21	44274845	rs1107831	A	G	3688.77	.	AC=1;AF=0.500;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	0/1:238,185:0.44:423
chr21	44275979	rs465663	T	C	1592.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:59,70:0.54:129
chr21	44279668	rs149300976	C	CCAGGGGCCAGCGATCCA	518.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.72;QD=39.90;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr21	44283718	rs7279435	G	A	7607.77	.	AC=1;AF=0.500;AN=2;DB;DP=788;set=Intersection	GT:AD:AF:DP	0/1:424,361:0.46:785
chr21	44293744	rs2248490	C	G	9506.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:0,344:1.00:344
chr21	44296933	rs71332377	AT	A	885.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:52,62:0.54:114
chr21	44296934	rs7279447	T	A	517.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.366;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=5.189;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.62;ReadPosRankSum=-0.086;SOR=1.460;set=HC	GT:AD:AF:DP	0/1:68,44:0.39:112
chr21	44296935	rs116944707	T	A	894.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-3.714;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=4.788;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.85;ReadPosRankSum=0.962;SOR=0.326;set=HC	GT:AD:AF:DP	0/1:52,62:0.54:114
chr21	44323461	rs4148972	G	A	4673.77	.	AC=1;AF=0.500;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	0/1:210,216:0.51:426
chr21	44323590	rs4148973	T	G	6020.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr21	44324365	rs10595	G	A	4121.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr21	44327015	rs2839604	G	A	6546.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr21	44328830	rs4148976	A	G	2516.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.96;QD=38.72;SOR=4.310;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr21	44328830	.	ATGTGAGCCA	GTGTGAGCCA,GTGTGAGCCG	583	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.28;FR=0.5000,0.5000;HP=2;HapScore=2;MGOF=3;MMLQ=28;MQ=57.4;NF=56,32;NR=5,1;PP=426,583;QD=7.5536264352;SC=AAGCGCCTGTATGTGAGCCAA;SbPval=0.54;Source=Platypus;TC=62;TCF=57;TCR=5;TR=61,33;WE=44328847;WS=44328820;set=Platypus	GT:AF:DP	0/1:0.98:62
chr21	44328839	.	A	G	810.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.844;ClippingRankSum=0.000;DP=74;ExcessHet=3.0103;FS=2.966;MLEAC=1;MLEAF=0.500;MQ=58.18;MQRankSum=-1.760;QD=11.11;ReadPosRankSum=-0.297;SOR=1.300;set=HC	GT:AD:AF:DP	0/1:35,38:0.52:73
chr21	44371114	rs451887	T	C	5148.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;MQ=59.98;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr21	44424689	rs3216136	G	GA	3426.73	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:1,139:0.99:140
chr21	44430325	rs234781	T	C	4959.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr21	44438157	.	C	CAAA	181.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.515;ClippingRankSum=0.000;DP=56;ExcessHet=3.0103;FS=10.139;MLEAC=1;MLEAF=0.500;MQ=59.73;MQRankSum=0.000;QD=6.06;ReadPosRankSum=-0.838;SOR=0.061;set=HC	GT:AD:AF:DP	0/1:18,12:0.40:30
chr21	44445185	rs234719	C	T	1004.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:42,42:0.50:84
chr21	44448763	rs170916	G	C	8098.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr21	44448775	rs234728	G	A	10187.77	.	AC=2;AF=1.00;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	1/1:0,369:1.00:369
chr21	44449095	rs234729	G	A	1487.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr21	44449917	rs234733	G	A	1097.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:52,54:0.51:106
chr21	44452424	rs141407897	T	TTCCCTCACCACCCTCCGTCTCTTCG	977.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.984;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=3.168;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.072;QD=17.46;ReadPosRankSum=-0.429;SOR=0.184;set=HC	GT:AD:AF:DP	0/1:29,27:0.48:56
chr21	44452455	rs378528	T	C	433.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.090;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=2.734;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.04;ReadPosRankSum=-1.117;SOR=1.445;set=HC	GT:AD:AF:DP	0/1:31,17:0.35:48
chr21	44475714	rs2124459	T	C	145.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:16,7:0.30:23
chr21	44475786	rs2124460	C	T	1197.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.021;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=3.042;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.19;ReadPosRankSum=-1.175;SOR=1.420;set=HC	GT:AD:AF:DP	0/1:41,33:0.45:74
chr21	44475796	rs2124461	T	C	1208.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.339;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=4.656;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.74;ReadPosRankSum=0.264;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:48,34:0.41:82
chr21	44475877	rs8132811	C	T	3927.77	.	AC=1;AF=0.500;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	0/1:138,172:0.55:310
chr21	44476759	rs234701	A	G	1279.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr21	44478217	rs139077204	T	C	3181.77	.	AC=1;AF=0.500;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	0/1:197,150:0.43:347
chr21	44479398	rs149280976	G	A	5569.77	.	AC=1;AF=0.500;AN=2;DB;DP=586;set=Intersection	GT:AD:AF:DP	0/1:307,276:0.47:583
chr21	44480616	rs1801181	G	A	1709.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:74,80:0.52:154
chr21	44483276	rs55767206	C	T	2999.77	.	AC=1;AF=0.500;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	0/1:185,141:0.43:326
chr21	44485350	rs234706	G	A	9172.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	1/1:0,337:1.00:337
chr21	44486324	rs234708	T	C	5053.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr21	44487891	rs234713	G	A	7823.77	.	AC=1;AF=0.500;AN=2;DB;DP=918;set=Intersection	GT:AD:AF:DP	0/1:513,394:0.43:907
chr21	44488033	rs234714	T	C	5733.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr21	44488755	rs5844149	G	GA,GAA	890.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.369;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.12;MQRankSum=0.449;QD=13.10;ReadPosRankSum=1.082;SOR=0.557;set=HC	GT:AD:AF:DP	1/2:13,39,16:0.57,0.24:68
chr21	44579990	rs68189421	G	A	486.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:39,25:0.39:64
chr21	44589215	rs872331	C	T	10138.77	.	AC=2;AF=1.00;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	1/1:0,379:1.00:379
chr21	44589920	rs5844151	G	GC	281.73	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:35,18:0.34:53
chr21	44590059	rs870137	C	T	699.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr21	44837551	rs430552	G	A	9272.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.221;ClippingRankSum=0.000;DB;DP=557;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.98;ReadPosRankSum=-0.859;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:300,246:0.45:546
chr21	44837555	rs430554	G	A	9422.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.285;ClippingRankSum=0.000;DB;DP=563;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.07;ReadPosRankSum=-0.757;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:302,250:0.45:552
chr21	44838330	rs34487963	C	A	2015.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:119,98:0.45:217
chr21	44839654	rs229346	A	G	353.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:25,19:0.43:44
chr21	44839786	rs145582574	G	C	2264.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:109,106:0.49:215
chr21	44840380	rs376540243	C	T	343.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:21,16:0.43:37
chr21	45107518	rs7279959	A	G	9692.77	.	AC=2;AF=1.00;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	1/1:0,358:1.00:358
chr21	45152500	rs2276528	G	A	19817.77	.	AC=2;AF=1.00;AN=2;DB;DP=758;set=Intersection	GT:AD:AF:DP	1/1:0,742:1.00:742
chr21	45153751	rs13050307	A	G	1471.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr21	45169005	rs9974827	A	G	4857.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr21	45170285	rs1106797	A	G	9256.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:0,338:1.00:338
chr21	45170614	rs3042235	A	ATG	2001.73	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:1,57:0.98:58
chr21	45172628	rs2010795	G	A	2826.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr21	45175958	rs7527	T	C	8523.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:0,323:1.00:323
chr21	45196323	.	CGCGCGGGGCGGG	C	868.73	.	AC=2;AF=1.00;AN=2;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.44;SOR=1.721;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr21	45210932	rs2276246	G	A	3970.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr21	45214953	rs2838370	G	T	2295.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr21	45215046	rs2838371	T	C	14471.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.22;SOR=1.006;set=HC	GT:AD:AF:DP	1/1:0,320:1.00:320
chr21	45215051	rs2838372	A	G	14762.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.81;SOR=0.980;set=HC	GT:AD:AF:DP	1/1:0,337:1.00:337
chr21	45217456	rs2070537	G	A	10362.77	.	AC=2;AF=1.00;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	1/1:0,387:1.00:387
chr21	45217559	rs2838378	T	C	13357.77	.	AC=2;AF=1.00;AN=2;DB;DP=518;set=Intersection	GT:AD:AF:DP	1/1:0,511:1.00:511
chr21	45220570	rs731935	T	C	2056.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr21	45220626	rs3216106	A	AC	1767.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr21	45220787	rs2329576	A	G	7301.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr21	45222058	rs4818868	A	G	981.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr21	45388079	rs11324107	CG	C	702.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.499;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.95;ReadPosRankSum=0.847;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:21,26:0.55:47
chr21	45404577	rs34696467	G	C	363.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.205;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.99;ReadPosRankSum=0.569;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:12,14:0.54:26
chr21	45478904	rs71326023	C	CGTAAT	570.73	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:17,16:0.48:33
chr21	45482800	rs2838478	T	C	972.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:57,49:0.46:106
chr21	45494183	rs2277805	G	A	1859.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:80,87:0.52:167
chr21	45503121	rs2071152	G	A	3606.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:122,168:0.58:290
chr21	45506819	rs1131999	T	C	2222.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:124,112:0.47:236
chr21	45509650	rs2277806	A	C	1906.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:94,89:0.49:183
chr21	45512094	rs3788104	G	A	506.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:29,22:0.43:51
chr21	45514141	rs11287102	TG	T	1721.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr21	45514149	rs9941801	A	G	1730.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr21	45514168	rs4819371	C	T	709.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr21	45514188	rs4818879	A	G	494.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr21	45518131	rs2242950	A	T	1162.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:58,51:0.47:109
chr21	45527112	rs72257518	GCTC	G	851.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr21	45527460	rs2850153	G	A	1068.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr21	45528919	rs2020945	G	A	4330.77	.	AC=1;AF=0.500;AN=2;DB;DP=472;set=Intersection	GT:AD:AF:DP	0/1:251,216:0.46:467
chr21	45534032	rs2243999	C	T	5342.77	.	AC=1;AF=0.500;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	0/1:171,245:0.59:416
chr21	45538512	rs5844173	TG	T	1830.73	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:53,60:0.53:113
chr21	45538647	rs756553	T	C	6856.77	.	AC=1;AF=0.500;AN=2;DB;DP=566;set=Intersection	GT:AD:AF:DP	0/1:246,314:0.56:560
chr21	45538725	rs756554	C	A	4533.77	.	AC=1;AF=0.500;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	0/1:194,209:0.52:403
chr21	45538782	rs756555	A	T	2162.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:98,97:0.50:195
chr21	45539240	rs2855652	G	C	754.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:31,34:0.52:65
chr21	45539426	rs2071142	G	A	2111.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:99,103:0.51:202
chr21	45540143	rs2855653	G	A	1001.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:38,42:0.53:80
chr21	45540207	rs2850157	C	T	2526.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:82,102:0.55:184
chr21	45540919	rs2071143	A	G	7247.77	.	AC=1;AF=0.500;AN=2;DB;DP=776;set=Intersection	GT:AD:AF:DP	0/1:404,365:0.47:769
chr21	45544594	rs2187313	T	C	3683.77	.	AC=1;AF=0.500;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	0/1:200,170:0.46:370
chr21	45547736	rs58898739	TA	T,TAAA	997.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.866;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=1.716;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.12;MQRankSum=0.413;QD=12.63;ReadPosRankSum=0.460;SOR=0.407;set=HC	GT:AD:AF:DP	1/2:9,35,35:0.44,0.44:79
chr21	45547886	rs140840856	G	A	3837.77	.	AC=1;AF=0.500;AN=2;DB;DP=378;MQ=59.99;set=Intersection	GT:AD:AF:DP	0/1:179,189:0.51:368
chr21	45550460	rs11311220	TC	T	1506.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr21	45553430	rs2187314	A	C	10102.77	.	AC=2;AF=1.00;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	1/1:0,355:1.00:355
chr21	45553476	rs968713	A	C	6702.77	.	AC=1;AF=0.500;AN=2;DB;DP=611;set=Intersection	GT:AD:AF:DP	0/1:287,321:0.53:608
chr21	45553596	rs968714	T	C	8608.77	.	AC=1;AF=0.500;AN=2;DB;DP=768;set=Intersection	GT:AD:AF:DP	0/1:362,399:0.52:761
chr21	45560331	rs2838492	C	G	857.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:21,35:0.62:56
chr21	45560755	rs4819380	G	A	329.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:20,14:0.41:34
chr21	45561039	rs1059813	T	C	7973.77	.	AC=1;AF=0.500;AN=2;DB;DP=763;set=Intersection	GT:AD:AF:DP	0/1:380,377:0.50:757
chr21	45564575	rs2838496	G	C	1078.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:34,41:0.55:75
chr21	45565473	rs7676	C	T	1739.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:121,89:0.42:210
chr21	45648992	rs7278940	T	C	11106.77	.	AC=2;AF=1.00;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	1/1:0,407:1.00:407
chr21	45649510	.	A	G	503	.	AC=1;AF=0.500;AN=2;BRF=0.52;FR=0.5000;HP=4;HapScore=2;MGOF=33;MMLQ=23;MQ=57.1;NF=25;NR=5;PP=503;QD=17.9257070849;SC=GACACCCCACAGGGGCTGGGC;SbPval=0.99;Source=Platypus;TC=94;TCF=58;TCR=36;TR=30;WE=45649518;WS=45649500;set=Platypus	GT:AD:AF:DP	0/1:64,30:0.32:94
chr21	45649666	.	G	A	2965	.	AC=2;AF=1.00;AN=2;BRF=0.46;FR=1.0000;HP=4;HapScore=1;MGOF=7;MMLQ=24;MQ=60.0;NF=132;NR=76;PP=2965;QD=20;SC=GGAGCGCGGGGGTCTAGCACT;SbPval=0.49;Source=Platypus;TC=209;TCF=133;TCR=76;TR=208;WE=45649674;WS=45649656;set=Platypus	GT:AD:AF:DP	1/1:1,208:1.00:209
chr21	45649778	rs4568033	A	G	13433.77	.	AC=2;AF=1.00;AN=2;DB;DP=511;set=Intersection	GT:AD:AF:DP	1/1:0,506:1.00:506
chr21	45649848	rs13052840	T	C	13890.77	.	AC=2;AF=1.00;AN=2;DB;DP=500;set=Intersection	GT:AD:AF:DP	1/1:0,495:1.00:495
chr21	45650009	rs2236668	T	C	4702.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr21	45651413	rs3746962	A	G	2715.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr21	45708277	rs878081	C	T	7143.77	.	AC=1;AF=0.500;AN=2;DB;DP=754;set=Intersection	GT:AD:AF:DP	0/1:401,350:0.47:751
chr21	45710107	rs1003854	T	C	1790.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:64,69:0.52:133
chr21	45712357	rs5844181	AC	A	99.73	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:13,6:0.32:19
chr21	45712977	rs1800521	T	C	2100.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:157,110:0.41:267
chr21	45717550	rs1133779	T	C	3167.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:140,158:0.53:298
chr21	45724055	rs8134520	G	A	1314.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:103,69:0.40:172
chr21	45725055	rs55730776	CA	TG	948.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.309;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=1.298;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.36;ReadPosRankSum=-0.266;SOR=0.979;set=HC	GT:AD:AF:DP	0/1:24,25:0.51:49
chr21	45725064	rs34642010	C	T	1006.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.113;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.98;ReadPosRankSum=-0.346;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:27,29:0.52:56
chr21	45725715	rs9975113	A	G	1813.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:169,104:0.38:273
chr21	45725857	rs9977591	TC	CT	1462.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;JOINED;set=Intersection	GT:AD:AF:DP	0/1:47,39:0.45:86
chr21	45725910	rs67861360	C	T	395.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:21,18:0.46:39
chr21	45726480	rs2070568	T	G	1443.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:39,35:0.47:74
chr21	45726499	.	T	TGGG	1478.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.355;ClippingRankSum=0.000;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=1.265;QD=14.64;ReadPosRankSum=0.878;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:54,47:0.47:101
chr21	45726504	rs55966702	A	G	1843.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.014;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=1.605;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=1.519;QD=17.73;ReadPosRankSum=1.235;SOR=0.523;set=HC	GT:AD:AF:DP	0/1:55,49:0.47:104
chr21	45726694	rs2070569	CC	GT	2643.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;JOINED;set=Intersection	GT:AD:AF:DP	0/1:82,71:0.46:153
chr21	45726790	rs2070571	T	C	467.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:18,19:0.51:37
chr21	45732116	rs1057034	C	T	2181.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:121,109:0.47:230
chr21	45741854	rs4818904	T	C	1855.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:90,88:0.49:178
chr21	45742115	rs2277808	G	A	883.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:40,44:0.52:84
chr21	45743594	rs12482028	C	T	1958.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:71,76:0.52:147
chr21	45746214	rs4818905	A	C	946.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:58,50:0.46:108
chr21	45746225	rs4818906	G	A	896.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:54,44:0.45:98
chr21	45750248	rs11552067	G	A	4746.77	.	AC=1;AF=0.500;AN=2;DB;DP=462;set=Intersection	GT:AD:AF:DP	0/1:239,221:0.48:460
chr21	45750346	rs2070573	C	A	6037.77	.	AC=1;AF=0.500;AN=2;DB;DP=521;set=Intersection	GT:AD:AF:DP	0/1:238,275:0.54:513
chr21	45753891	rs35498868	C	T	5643.77	.	AC=1;AF=0.500;AN=2;DB;DP=536;set=Intersection	GT:AD:AF:DP	0/1:257,271:0.51:528
chr21	45755808	rs62220411	G	A	2587.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:56,105:0.65:161
chr21	45784271	rs2276252	G	A	498.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:30,25:0.45:55
chr21	45789011	rs34543751	A	AG	3335.73	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr21	45789352	rs45552731	T	C	333.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:27,13:0.33:40
chr21	45799164	rs2838556	T	C	2328.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:71,106:0.60:177
chr21	45802489	.	G	A	756.77	.	AC=1;AF=0.500;AN=2;DP=84;set=Intersection	GT:AD:AF:DP	0/1:46,37:0.45:83
chr21	45811343	rs1556314	T	G	6072.77	.	AC=1;AF=0.500;AN=2;DB;DP=550;set=Intersection	GT:AD:AF:DP	0/1:263,278:0.51:541
chr21	45815547	.	CTGTGGAGGGG	C	1845.73	.	AC=1;AF=0.500;AN=2;DP=142;set=Intersection	GT:AD:AF:DP	0/1:37,50:0.57:87
chr21	45815567	.	GTGTGGAGGGC	G	2903	.	AC=1;AF=0.500;AN=2;BRF=0.34;FR=0.5000;HP=3;HapScore=2;MGOF=16;MMLQ=21;MQ=57.55;NF=1;NR=63;PP=2903;QD=20;SC=GTGTGGAGGGGTGTGGAGGGC;SbPval=0.59;Source=Platypus;TC=71;TCF=1;TCR=70;TR=64;WE=45815599;WS=45815537;set=Platypus	GT:AD:AF:DP	0/1:7,64:0.90:71
chr21	45815573	rs67099101	AG	A	1087.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.237;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=10.971;MLEAC=1;MLEAF=0.500;MQ=61.84;MQRankSum=-3.786;QD=13.43;ReadPosRankSum=-1.935;SOR=2.682;set=HC	GT:AD:AF:DP	0/1:50,31:0.38:81
chr21	45815575	rs150668005	G	A	1096.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.392;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=10.971;MLEAC=1;MLEAF=0.500;MQ=61.88;MQRankSum=-3.786;QD=13.54;ReadPosRankSum=-1.758;SOR=2.682;set=HC	GT:AD:AF:DP	0/1:50,31:0.38:81
chr21	45815580	.	TG	T	945.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.452;ClippingRankSum=0.000;DP=77;ExcessHet=3.0103;FS=8.232;MLEAC=1;MLEAF=0.500;MQ=62.00;MQRankSum=-3.578;QD=12.44;ReadPosRankSum=-0.599;SOR=2.359;set=HC	GT:AD:AF:DP	0/1:50,26:0.34:76
chr21	45815583	.	AGGATGTGG	A	903.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.343;ClippingRankSum=0.000;DP=75;ExcessHet=3.0103;FS=8.315;MLEAC=1;MLEAF=0.500;MQ=61.78;MQRankSum=-3.411;QD=12.21;ReadPosRankSum=-0.775;SOR=2.213;set=HC	GT:AD:AF:DP	0/1:48,26:0.35:74
chr21	45817620	rs1785436	T	C	2188.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:153,111:0.42:264
chr21	45821794	rs1785437	C	T	4110.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:172,179:0.51:351
chr21	45825975	rs1614122	G	A	2491.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:124,109:0.47:233
chr21	45826434	rs1785454	C	T	1640.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:35,71:0.67:106
chr21	45826462	rs1618355	C	A	1730.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:72,81:0.53:153
chr21	45826717	rs45483495	C	T	39.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:17,4:0.19:21
chr21	45834025	rs915779	T	C	1718.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:96,82:0.46:178
chr21	45837790	rs1785452	T	C	4523.77	.	AC=1;AF=0.500;AN=2;DB;DP=578;set=Intersection	GT:AD:AF:DP	0/1:326,234:0.42:560
chr21	45843707	rs35058894	TGAG	T	746.73	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:17,20:0.54:37
chr21	45844751	rs9978351	A	G	4293.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr21	45845807	rs762428	C	T	1263.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr21	45854925	rs41277556	G	A	1268.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:55,62:0.53:117
chr21	45861790	rs1055540	T	C	3178.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:143,154:0.52:297
chr21	45942026	rs62218855	G	A	2009.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:103,91:0.47:194
chr21	45942111	rs233230	A	G	1589.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr21	45959195	rs233316	G	A	3017.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:161,145:0.47:306
chr21	45959312	rs233317	C	T	11507.77	.	AC=2;AF=1.00;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	1/1:0,397:1.00:397
chr21	45959386	rs233318	G	A	6527.77	.	AC=1;AF=0.500;AN=2;DB;DP=649;set=Intersection	GT:AD:AF:DP	0/1:338,302:0.47:640
chr21	45959556	.	A	ATG	15710.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.640;ClippingRankSum=0.000;DP=906;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-0.627;QD=17.67;ReadPosRankSum=0.146;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:481,408:0.46:889
chr21	45959557	.	ATC	TGA	2934	.	AC=1;AF=0.500;AN=2;BRF=0.43;FR=0.5000;HP=1;HapScore=1;MGOF=5;MMLQ=25;MQ=59.88;NF=121;NR=157;PP=2934;QD=20;SC=ATGAAGAGGAATCCTCAGAGC;SbPval=0.6;Source=Platypus;TC=656;TCF=292;TCR=364;TR=278;WE=45959567;WS=45959547;set=Platypus	GT:AD:AF:DP	0/1:378,278:0.42:656
chr21	45959557	.	ATC	A	15704.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.287;ClippingRankSum=0.000;DP=899;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=-0.649;QD=17.57;ReadPosRankSum=0.408;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:488,406:0.45:894
chr21	45959918	rs233320	G	A	2710.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:123,119:0.49:242
chr21	45970812	rs2329834	G	A	16144.77	.	AC=2;AF=1.00;AN=2;DB;DP=620;set=Intersection	GT:AD:AF:DP	1/1:3,609:1.00:612
chr21	45970920	rs150498297	C	T	6555.77	.	AC=1;AF=0.500;AN=2;DB;DP=816;set=Intersection	GT:AD:AF:DP	0/1:479,334:0.41:813
chr21	45971357	rs456478	A	C	1377.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.350;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=1.902;MLEAC=1;MLEAF=0.500;MQ=61.78;MQRankSum=-2.654;QD=7.74;ReadPosRankSum=-0.283;SOR=0.525;set=HC	GT:AD:AF:DP	0/1:104,74:0.42:178
chr21	45971380	rs6147532	A	AGTGAGTGAGTGT	3684.73	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr21	45978488	rs12483390	G	A	11561.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr21	45978499	rs377549	T	G	12130.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.48;QD=45.43;SOR=0.778;set=HC	GT:AD:AF:DP	1/1:0,267:1.00:267
chr21	45978503	rs435424	G	A	11943.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.58;QD=44.73;SOR=0.762;set=HC	GT:AD:AF:DP	1/1:0,267:1.00:267
chr21	45978591	rs79221051	G	A	3319.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.451;ClippingRankSum=0.000;DB;DP=352;ExcessHet=3.0103;FS=1.262;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.57;ReadPosRankSum=0.157;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:167,180:0.52:347
chr21	45978677	rs62220866	C	T	1426.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:68,70:0.51:138
chr21	46011468	rs465279	G	A	13789.77	.	AC=2;AF=1.00;AN=2;DB;DP=488;set=Intersection	GT:AD:AF:DP	1/1:0,479:1.00:479
chr21	46012240	rs543542	A	G	2491.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr21	46020473	rs113686885	C	CTCAT	17044.73	.	AC=2;AF=1.00;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	1/1:0,396:1.00:396
chr21	46020527	rs1211103	C	T	14498.77	.	AC=2;AF=1.00;AN=2;DB;DP=538;set=Intersection	GT:AD:AF:DP	1/1:3,534:0.99:537
chr21	46020655	rs36208679	CCTGCTGCGCCCCCAG	C	1097.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.421;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=6.339;MLEAC=1;MLEAF=0.500;MQ=49.98;MQRankSum=-0.153;QD=14.83;ReadPosRankSum=-3.058;SOR=1.539;set=HC	GT:AD:AF:DP	0/1:43,31:0.42:74
chr21	46021088	rs388827	C	T	6549.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.41;QD=31.64;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,207:1.00:207
chr21	46021179	rs363877	C	A	14114.77	.	AC=2;AF=1.00;AN=2;DB;DP=534;set=Intersection	GT:AD:AF:DP	1/1:8,520:0.98:528
chr21	46021205	rs389167	C	T	16516.77	.	AC=2;AF=1.00;AN=2;DB;DP=685;set=Intersection	GT:AD:AF:DP	1/1:7,649:0.99:656
chr21	46021370	rs437149	T	C	38898.77	.	AC=2;AF=1.00;AN=2;DB;DP=940;set=Intersection	GT:AD:AF:DP	1/1:0,929:1.00:929
chr21	46021390	rs446817	G	C	37294.77	.	AC=2;AF=1.00;AN=2;DB;DP=852;set=Intersection	GT:AD:AF:DP	1/1:0,846:1.00:846
chr21	46021481	rs437334	T	C	25462.77	.	AC=2;AF=1.00;AN=2;DB;DP=593;set=Intersection	GT:AD:AF:DP	1/1:0,587:1.00:587
chr21	46021494	rs369720	A	G	26092.77	.	AC=2;AF=1.00;AN=2;DB;DP=615;set=Intersection	GT:AD:AF:DP	1/1:0,609:1.00:609
chr21	46021607	rs370092	A	G	26469.77	.	AC=2;AF=1.00;AN=2;DB;DP=1012;set=Intersection	GT:AD:AF:DP	1/1:0,998:1.00:998
chr21	46021759	rs659638	A	G	5196.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr21	46032094	rs411254	A	G	14293.77	.	AC=2;AF=1.00;AN=2;DB;DP=556;set=Intersection	GT:AD:AF:DP	1/1:0,551:1.00:551
chr21	46047779	rs142813376	G	A	8363.77	.	AC=1;AF=0.500;AN=2;DB;DP=877;set=Intersection	GT:AD:AF:DP	0/1:437,418:0.49:855
chr21	46047888	rs201944389	G	C	9450.77	.	AC=1;AF=0.500;AN=2;DB;DP=914;set=Intersection	GT:AD:AF:DP	0/1:469,442:0.49:911
chr21	46057958	rs4818951	C	T	5069.77	.	AC=1;AF=0.500;AN=2;DB;DP=490;set=Intersection	GT:AD:AF:DP	0/1:243,240:0.50:483
chr21	46067180	rs462007	C	T	8520.77	.	AC=1;AF=0.500;AN=2;DB;DP=781;set=Intersection	GT:AD:AF:DP	0/1:386,385:0.50:771
chr21	46191256	rs4818975	C	A	1125.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:46,49:0.52:95
chr21	46191270	rs11569	C	T	4038.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr21	46197450	rs2294157	C	T	839.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:38,39:0.51:77
chr21	46221494	rs28728356	G	C	755.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:46,31:0.40:77
chr21	46226786	rs1051331	A	G	2471.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:164,127:0.44:291
chr21	46271452	rs235314	C	T	7703.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr21	46271660	rs235315	A	G	1168.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr21	46275047	rs235317	A	C	1537.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:63,68:0.52:131
chr21	46281012	rs118037524	C	T	2808.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:119,123:0.51:242
chr21	46281314	rs235276	T	C	3046.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr21	46293582	rs112140470	G	A	3617.77	.	AC=1;AF=0.500;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	0/1:252,191:0.43:443
chr21	46293692	rs235373	T	C	1248.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:66,36:0.35:102
chr21	46293698	rs11388069	G	GC	1251.73	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:60,35:0.37:95
chr21	46306472	rs235375	C	G	1383.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:77,63:0.45:140
chr21	46311813	rs235326	A	G	4764.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.541;ClippingRankSum=0.000;DB;DP=502;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.74;ReadPosRankSum=-0.154;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:251,238:0.49:489
chr21	46314907	rs235330	T	A	9540.77	.	AC=2;AF=1.00;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	1/1:1,353:1.00:354
chr21	46321677	rs5030669	G	A	3564.77	.	AC=1;AF=0.500;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	0/1:217,177:0.45:394
chr21	46326815	rs5030668	C	T	3124.77	.	AC=1;AF=0.500;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	0/1:209,160:0.43:369
chr21	46327835	rs3746972	A	G	1889.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:91,79:0.46:170
chr21	46328026	rs3746973	G	A	3858.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:156,173:0.53:329
chr21	46328099	rs760462	T	C	1268.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:73,62:0.46:135
chr21	46354055	rs9974172	A	G	1041.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:55,52:0.49:107
chr21	46389017	rs12106383	C	A	1447.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:69,72:0.51:141
chr21	46389189	rs12106389	C	T	1108.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr21	46389212	rs79794356	A	G	374.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:11,15:0.58:26
chr21	46393090	rs3827260	C	T	7579.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr21	46554604	rs11369444	A	AT	2467.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.051;ClippingRankSum=0.000;DB;DP=474;ExcessHet=3.0103;FS=2.717;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=0.000;QD=6.03;ReadPosRankSum=-0.070;SOR=0.868;set=HC	GT:AD:AF:DP	0/1:200,209:0.51:409
chr21	46572572	rs420085	A	G	4557.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr21	46596639	rs71324410	A	G	1278.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:35,48:0.58:83
chr21	46604363	rs35076710	AT	A	132.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.945;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.57;MQRankSum=0.000;QD=9.48;ReadPosRankSum=1.747;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:4,10:0.71:14
chr21	46641968	rs1051367	G	A	8101.77	.	AC=1;AF=0.500;AN=2;DB;DP=919;set=Intersection	GT:AD:AF:DP	0/1:508,403:0.44:911
chr21	46685592	rs1006887	C	G	1236.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:67,60:0.47:127
chr21	46703223	.	CG	C	213.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.735;ClippingRankSum=0.000;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.48;ReadPosRankSum=-0.199;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:24,15:0.38:39
chr21	46703256	rs11367431	TG	T	983.73	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:43,42:0.49:85
chr21	46825001	.	CCCCGCCCCCTGCCCGGCCCCTGCCCGGCCCCTG	C	68.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.319;ClippingRankSum=-0.000;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.87;ReadPosRankSum=1.150;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:7,3:0.30:10
chr21	46825028	rs9981831	G	C	87.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=2.808;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.75;ReadPosRankSum=0.992;SOR=1.170;set=HC	GT:AD:AF:DP	0/1:3,6:0.67:9
chr21	46825200	.	C	CGGCTGCGG	364	.	AC=2;AF=1.00;AN=2;BRF=0.61;FR=1.0000;HP=3;HapScore=2;MGOF=15;MMLQ=24;MQ=58.63;NF=0;NR=4;PP=364;QD=97.75;SC=CGCCAAGATGCGGCTGCGGGG;SbPval=1.0;Source=Platypus;TC=12;TCF=4;TCR=8;TR=4;WE=46825208;WS=46825190;set=Platypus	GT:AD:AF:DP	1/1:8,4:0.33:12
chr21	46825202	.	G	GCTGCGGGGCTGCGGGGGTCCCGGGGGTCCCGGGGGTCGGCTGGGTCCTGCGGGGGTC	1071.73	.	AC=2;AF=1.00;AN=2;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.97;QD=66.98;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr21	46875564	rs914230	T	C	26879.77	.	AC=2;AF=1.00;AN=2;DB;DP=1018;set=Intersection	GT:AD:AF:DP	1/1:1,1003:1.00:1004
chr21	46875874	rs61759533	G	A	9889.77	.	AC=1;AF=0.500;AN=2;DB;DP=928;set=Intersection	GT:AD:AF:DP	0/1:449,461:0.51:910
chr21	46876083	rs2236451	A	G	4796.77	.	AC=1;AF=0.500;AN=2;DB;DP=563;set=Intersection	GT:AD:AF:DP	0/1:307,241:0.44:548
chr21	46876173	rs2236452	C	T	6981.77	.	AC=1;AF=0.500;AN=2;DB;DP=675;set=Intersection	GT:AD:AF:DP	0/1:333,332:0.50:665
chr21	46876306	rs11702494	G	A	7279.77	.	AC=1;AF=0.500;AN=2;DB;DP=690;set=Intersection	GT:AD:AF:DP	0/1:335,349:0.51:684
chr21	46876580	rs8133886	C	T	5214.77	.	AC=1;AF=0.500;AN=2;DB;DP=488;set=Intersection	GT:AD:AF:DP	0/1:246,237:0.49:483
chr21	46895521	rs35616809	CAT	C	4709.73	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:106,123:0.54:229
chr21	46896458	rs80289899	T	G	2119.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:94,99:0.51:193
chr21	46896489	rs79633299	T	G	1314.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:58,57:0.50:115
chr21	46898174	rs2236464	T	C	1770.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:98,83:0.46:181
chr21	46899947	rs9979845	G	A	2598.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:154,135:0.47:289
chr21	46900214	rs9980181	G	A	2178.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:80,100:0.56:180
chr21	46900546	rs28608951	C	T	2734.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:141,126:0.47:267
chr21	46900856	rs9983599	C	T	1053.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:48,47:0.49:95
chr21	46901973	rs12482088	A	C	2455.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:119,109:0.48:228
chr21	46902180	rs12482563	T	C	3258.77	.	AC=1;AF=0.500;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	0/1:176,162:0.48:338
chr21	46902273	rs2236468	A	G	3234.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:122,153:0.56:275
chr21	46902380	rs12482373	G	A	1742.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.223;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.953;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.78;ReadPosRankSum=-0.185;SOR=0.877;set=HC	GT:AD:AF:DP	0/1:34,46:0.57:80
chr21	46902390	rs2236469	G	A	1637.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.120;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=3.459;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.75;ReadPosRankSum=-1.310;SOR=1.157;set=HC	GT:AD:AF:DP	0/1:31,41:0.57:72
chr21	46906627	rs2274808	C	T	292.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:25,16:0.39:41
chr21	46906711	rs2274809	G	A	802.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:40,40:0.50:80
chr21	46906960	rs3818662	A	G	333.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:10,18:0.64:28
chr21	46907287	rs9977268	C	T	555.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:24,27:0.53:51
chr21	46907479	rs9976784	G	A	1008.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:64,51:0.44:115
chr21	46908355	rs11702425	T	C	6194.77	.	AC=1;AF=0.500;AN=2;DB;DP=534;set=Intersection	GT:AD:AF:DP	0/1:244,282:0.54:526
chr21	46909516	rs8131819	G	A	1621.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:92,84:0.48:176
chr21	46910321	.	T	C	483	.	AC=1;AF=0.500;AN=2;BRF=0.36;FR=0.5000;HP=2;HapScore=2;MGOF=22;MMLQ=28;MQ=59.96;NF=10;NR=22;PP=483;QD=16.1803503921;SC=GGGACTATGCTAAGATGAAAG;SbPval=0.34;Source=Platypus;TC=73;TCF=19;TCR=54;TR=32;WE=46910329;WS=46910311;set=Platypus	GT:AD:AF:DP	1/0:41,32:0.44:73
chr21	46910352	.	CC	GT	1138	.	AC=1;AF=0.500;AN=2;BRF=0.38;FR=0.5000;HP=2;HapScore=4;MGOF=42;MMLQ=24;MQ=59.59;NF=9;NR=14;PP=1138;QD=51.802951081;SC=ATGTGCCCTCCCGGGTCCCTG;SbPval=0.28;Source=Platypus;TC=49;TCF=15;TCR=34;TR=23;WE=46910373;WS=46910342;set=Platypus	GT:AD:AF:DP	0/1:26,23:0.47:49
chr21	46910365	.	T	C	1157	.	AC=1;AF=0.500;AN=2;BRF=0.38;FR=0.5000;HP=3;HapScore=4;MGOF=42;MMLQ=28;MQ=59.5;NF=8;NR=15;PP=1157;QD=51.816139676;SC=GGTCCCTGGGTCTCCATGTGC;SbPval=0.53;Source=Platypus;TC=39;TCF=13;TCR=26;TR=23;WE=46910373;WS=46910342;set=Platypus	GT:AD:AF:DP	0/1:16,23:0.59:39
chr21	46910426	.	G	A	454	.	AC=1;AF=0.500;AN=2;BRF=0.36;FR=0.5000;HP=2;HapScore=3;MGOF=39;MMLQ=28;MQ=59.54;NF=2;NR=6;PP=454;QD=61.0964015684;SC=CTGGGCCTCCGTGTGCCCACT;SbPval=0.92;Source=Platypus;TC=31;TCF=14;TCR=17;TR=8;WE=46910453;WS=46910388;set=Platypus	GT:AD:AF:DP	1/0:23,8:0.26:31
chr21	46910432	.	CCA	C	799	.	AC=1;AF=0.500;AN=2;BRF=0.36;FR=0.5000;HP=2;HapScore=3;MGOF=39;MMLQ=24;MQ=59.46;NF=1;NR=6;PP=799;QD=121.325755319;SC=CTCCGTGTGCCCACTCCCGGG;SbPval=0.92;Source=Platypus;TC=25;TCF=8;TCR=17;TR=7;WE=46910453;WS=46910388;set=Platypus	GT:AD:AF:DP	1/0:18,7:0.28:25
chr21	46910445	.	T	C	481	.	AC=1;AF=0.500;AN=2;BRF=0.36;FR=0.5000;HP=2;HapScore=3;MGOF=39;MMLQ=28;MQ=59.48;NF=1;NR=6;PP=481;QD=73.6816017925;SC=CTCCCGGGTCTCTGGGCCTCC;SbPval=0.97;Source=Platypus;TC=30;TCF=13;TCR=17;TR=7;WE=46910453;WS=46910388;set=Platypus	GT:AD:AF:DP	1/0:23,7:0.23:30
chr21	46910574	rs71240730	G	GGGTCTCT	1007.73	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:43,23:0.35:66
chr21	46912658	rs11270246	G	GCCCGCCACTGCCCT	306.73	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:18,10:0.36:28
chr21	46913300	rs749625	G	A	2136.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:83,94:0.53:177
chr21	46913517	rs749627	A	G	1384.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:65,65:0.50:130
chr21	46914261	rs60331963	G	A	666.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:22,28:0.56:50
chr21	46914642	rs9977637	A	G	1075.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:48,49:0.51:97
chr21	46916516	rs5844240	AC	A	5508.73	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr21	46918574	rs2282120	T	C	1251.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:67,63:0.48:130
chr21	46924209	rs2838949	C	A	579.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:16,24:0.60:40
chr21	46924425	rs149296338	CGGCCCCCCA	C	3860.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.941;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.18;MQRankSum=0.724;QD=28.39;ReadPosRankSum=0.812;SOR=0.925;set=HC	GT:AD:AF:DP	1/1:4,132:0.97:136
chr21	46924931	rs9980752	G	A	1409.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:73,65:0.47:138
chr21	46927370	rs144246690	TGGGAGGGCCAGGTGCTGGGGCGGGAGAGTCGGGTGCTGGGCA	T	4289.73	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr21	46929467	rs1050351	G	A	9251.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;MQ=60.03;set=Intersection	GT:AD:AF:DP	1/1:0,354:1.00:354
chr21	46929522	rs3835286	GC	G	6806.73	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:3,271:0.99:274
chr21	46930865	.	AACACCCCACATACACCCCCAAACACCCCCCACACCC	A	412.74	.	AC=2;AF=1.00;AN=2;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.27;SOR=4.804;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr21	46930909	.	ACAACACACCCCCCC	A	817.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.43;SOR=5.892;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr21	46930924	.	C	T	871.77	.	AC=2;AF=1.00;ALERT;AN=2;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=48.43;SOR=5.892;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr21	46930929	.	ACATCC	A	1257.73	.	AC=2;AF=1.00;AN=2;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=54.68;SOR=6.358;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr21	46930948	rs116087241	A	C	2747.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=51.84;SOR=4.215;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr21	46930959	rs147164507	CA	C	3555.73	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.10;QD=39.07;SOR=2.329;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr21	46930992	rs56335679	A	C	9312.77	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=1.933;ClippingRankSum=0.000;DB;DP=304;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.07;MQRankSum=0.260;QD=33.74;ReadPosRankSum=0.542;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:8,268:0.97:276
chr21	46930993	rs55690336	C	A	10417.73	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=0.154;ClippingRankSum=0.000;DB;DP=310;ExcessHet=3.0103;FS=1.456;MLEAC=2;MLEAF=1.000;MQ=60.07;MQRankSum=0.245;QD=36.05;ReadPosRankSum=2.097;SOR=0.588;set=HC	GT:AD:AF:DP	1/1:7,282:0.98:289
chr21	46931004	rs148407279	T	TAC	14843.73	.	AC=2;AF=1.00;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	1/1:0,332:1.00:332
chr21	46932328	rs7499	G	A	9032.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:2,330:0.99:332
chr21	46932383	rs8199	G	A	5053.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr21	46934826	rs1051298	G	A	2212.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr21	46934861	rs1051296	A	C	3898.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr21	46935077	.	TAA	T,TA	2087.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=144;set=Intersection	GT:AF:DP	1/2:0.30,0.63:126
chr21	46954343	rs2330184	T	C	6930.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr21	47320377	rs2075891	C	T	386.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:30,21:0.41:51
chr21	47320425	rs7281638	T	C	597.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:45,33:0.42:78
chr21	47320605	rs2075890	G	A	296.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:13,15:0.54:28
chr21	47320633	rs2075889	T	C	214.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:6,10:0.62:16
chr21	47320805	rs1547240	G	A	734.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:35,30:0.46:65
chr21	47329352	rs2277812	T	C	10581.77	.	AC=2;AF=1.00;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	1/1:0,401:1.00:401
chr21	47350796	rs11089031	G	A	1731.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:96,87:0.48:183
chr21	47401760	rs7671	C	G	651.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:32,32:0.50:64
chr21	47404397	rs3746993	A	G	4538.77	.	AC=1;AF=0.500;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	0/1:189,218:0.54:407
chr21	47406612	rs754507	C	A	1174.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:51,53:0.51:104
chr21	47409113	rs8129814	C	T	1198.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:37,54:0.59:91
chr21	47409503	rs2277814	A	G	1346.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:69,66:0.49:135
chr21	47410378	.	GAATGGGGC	G	1977.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.928;ClippingRankSum=0.000;DP=276;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=4.156;QD=7.97;ReadPosRankSum=-5.527;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:183,65:0.26:248
chr21	47410388	.	AGATGGGGAGGGACGGAGTGGACGGCGTGAAGGTGACC	A	1988.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.246;ClippingRankSum=0.000;DP=229;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=4.088;QD=8.92;ReadPosRankSum=-5.807;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:163,60:0.27:223
chr21	47410626	rs1980981	T	G	2619.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr21	47412524	rs760439	G	A	483.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:14,22:0.61:36
chr21	47412751	rs2850173	A	C	3295.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr21	47412840	rs2075893	C	T	418.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:17,20:0.54:37
chr21	47417147	rs148786363	CCAGGCCCTTCGTG	C	331.73	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:17,10:0.37:27
chr21	47417206	rs11701583	A	G	3041.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr21	47417224	rs9979532	A	G	1271.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:67,64:0.49:131
chr21	47417303	rs2839077	T	C	2979.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:171,151:0.47:322
chr21	47417415	rs2276254	C	A	9037.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;MQ=60.29;set=Intersection	GT:AD:AF:DP	1/1:1,225:1.00:226
chr21	47417432	rs3216137	A	AG	8679.73	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:1,203:1.00:204
chr21	47417695	rs2276256	G	C	1110.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:41,53:0.56:94
chr21	47417975	rs3737437	A	G	5851.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:1,221:1.00:222
chr21	47418685	rs148345528	ATG	A	1154.73	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:43,37:0.46:80
chr21	47418728	rs141212516	C	CT	5065.73	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr21	47419520	rs75434097	G	A	1293.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:99,63:0.39:162
chr21	47419697	rs8131101	C	T	4561.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.185;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.16;MQRankSum=0.255;QD=35.09;ReadPosRankSum=-0.706;SOR=1.067;set=HC	GT:AD:AF:DP	1/1:3,127:0.98:130
chr21	47419706	rs11464071	C	CG	4032.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.762;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=2.343;MLEAC=2;MLEAF=1.000;MQ=60.19;MQRankSum=0.312;QD=37.00;ReadPosRankSum=0.476;SOR=1.871;set=HC	GT:AD:AF:DP	1/1:4,105:0.96:109
chr21	47419747	rs8131632	A	G	2106.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr21	47419770	rs73908116	G	A	1834.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.87;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr21	47419775	.	C	CGTGAAGATCATAGGGGGACGT	324.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.081;ClippingRankSum=0.000;DP=42;ExcessHet=3.0103;FS=7.549;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.20;ReadPosRankSum=-0.568;SOR=3.258;set=HC	GT:AD:AF:DP	0/1:4,10:0.71:14
chr21	47419780	rs8130255	G	A	113.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.693;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=7.549;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.13;ReadPosRankSum=0.993;SOR=0.039;set=HC	GT:AD:AF:DP	0/1:10,4:0.29:14
chr21	47419788	.	G	GA	325.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.784;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=7.549;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.27;ReadPosRankSum=-0.497;SOR=3.258;set=HC	GT:AD:AF:DP	0/1:4,10:0.71:14
chr21	47419794	rs8126900	T	C	1096.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.69;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr21	47419804	rs8131227	C	T	826.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.51;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr21	47419829	.	T	TAG	833	.	AC=1;AF=0.500;AN=2;BRF=0.41;FR=0.5000;HP=5;HapScore=4;MGOF=141;MMLQ=28;MQ=51.9;NF=0;NR=16;PP=833;QD=54.0;SC=GTGAGGATCATGGGGGACATG;SbPval=1.0;Source=Platypus;TC=29;TCF=0;TCR=29;TR=16;WE=47419838;WS=47419819;set=Platypus	GT:AD:AF:DP	1/0:13,16:0.55:29
chr21	47419830	.	G	A	829	.	AC=1;AF=0.500;AN=2;BRF=0.41;FR=0.5000;HP=4;HapScore=4;MGOF=141;MMLQ=28;MQ=51.9;NF=0;NR=7;PP=829;QD=123.395887507;SC=TGAGGATCATGGGGGACATGT;SbPval=1.0;Source=Platypus;TC=29;TCF=1;TCR=28;TR=7;WE=47419838;WS=47419819;set=Platypus	GT:AD:AF:DP	1/0:22,7:0.24:29
chr21	47420548	.	AG	A	1577	.	AC=1;AF=0.500;AN=2;BRF=0.38;FR=0.5000;HP=6;HapScore=1;MGOF=101;MMLQ=24;MQ=63.96;NF=71;NR=54;PP=1577;QD=12.832;SC=AGGCCGGGGAAGGGGGGAGGC;SbPval=0.66;Source=Platypus;TC=140;TCF=75;TCR=65;TR=125;WE=47420556;WS=47420538;set=Platypus	GT:AD:AF:DP	1/0:15,125:0.89:140
chr21	47420565	rs142824931	AGGAGGGCGGCCGGGGAG	A	10366.73	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr21	47420726	rs7276098	C	G	8218.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chr21	47420761	rs7283989	G	A	7573.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.84;SOR=1.495;set=HC	GT:AD:AF:DP	1/1:0,181:1.00:181
chr21	47420769	rs7276782	A	G	7182.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.89;SOR=1.547;set=HC	GT:AD:AF:DP	1/1:0,150:1.00:150
chr21	47421315	rs11701124	C	T	11936.77	.	AC=2;AF=1.00;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	1/1:1,440:1.00:441
chr21	47421793	rs8132377	C	T	3277.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.441;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=0.560;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.21;ReadPosRankSum=0.446;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:97,83:0.46:180
chr21	47421797	rs8131313	G	A	3269.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.861;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=0.525;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.03;ReadPosRankSum=1.424;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:114,90:0.44:204
chr21	47421864	rs8132521	C	T	3193.77	.	AC=1;AF=0.500;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	0/1:198,163:0.45:361
chr21	47422412	rs35796750	C	T	28731.77	.	AC=2;AF=1.00;AN=2;DB;DP=1068;set=Intersection	GT:AD:AF:DP	1/1:1,1054:1.00:1055
chr21	47422639	rs2236485	A	G	8423.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.95;SOR=2.200;set=HC	GT:AD:AF:DP	1/1:0,228:1.00:228
chr21	47422639	.	ACCCGG	GCCCGA,GCCCGG	1707	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.36;FR=0.5000,0.5000;HP=5;HapScore=2;MGOF=12;MMLQ=24;MQ=59.91;NF=19,42;NR=69,145;PP=1707,1443;QD=20.0053167598;SC=GCATGGGGCCACCCGGGCAGT;SbPval=0.56;Source=Platypus;TC=189;TCF=42;TCR=147;TR=88,187;WE=47422652;WS=47422629;set=Platypus	GT:AF:DP	0/1:0.47:189
chr21	47422644	rs2236486	G	A	3303.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.101;ClippingRankSum=0.000;DB;DP=219;ExcessHet=3.0103;FS=1.211;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.22;ReadPosRankSum=1.577;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:114,103:0.47:217
chr21	47422679	rs2236487	G	A	2531.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:55,69:0.56:124
chr21	47422712	rs2236488	C	T	563.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:36,25:0.41:61
chr21	47423133	rs2236489	C	G	8567.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:2,302:0.99:304
chr21	47423233	rs59769541	C	T	2226.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:93,95:0.51:188
chr21	47423509	rs13051496	C	T	4060.77	.	AC=1;AF=0.500;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	0/1:242,192:0.44:434
chr21	47532287	rs142328765	C	T	5138.77	.	AC=1;AF=0.500;AN=2;DB;DP=528;set=Intersection	GT:AD:AF:DP	0/1:251,259:0.51:510
chr21	47532536	rs2070957	C	T	3812.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:150,168:0.53:318
chr21	47536180	rs2839109	C	T	4673.77	.	AC=1;AF=0.500;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	0/1:203,226:0.53:429
chr21	47536840	rs59060956	TAC	T	434.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.344;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=0.808;QD=16.72;ReadPosRankSum=-1.093;SOR=0.929;set=HC	GT:AD:AF:DP	0/1:9,17:0.65:26
chr21	47537666	rs5844252	T	TG	332.73	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:17,13:0.43:30
chr21	47538050	rs7279535	G	A	435.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:26,20:0.43:46
chr21	47538691	rs9917540	G	T	2817.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:120,129:0.52:249
chr21	47538960	rs2839110	G	A	3029.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:152,150:0.50:302
chr21	47539790	rs3737362	A	G	3563.77	.	AC=1;AF=0.500;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	0/1:209,181:0.46:390
chr21	47540421	rs73159701	T	C	683.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:30,33:0.52:63
chr21	47542654	rs5844253	G	GC	5704.73	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr21	47542861	rs915786	A	G	2218.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:87,101:0.54:188
chr21	47544451	rs36033678	GC	G	949.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.647;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=5.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.83;ReadPosRankSum=-0.549;SOR=1.488;set=HC	GT:AD:AF:DP	0/1:29,45:0.61:74
chr21	47544727	rs9981879	G	A	4257.77	.	AC=1;AF=0.500;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	0/1:144,189:0.57:333
chr21	47544838	rs9981981	G	A	4489.77	.	AC=1;AF=0.500;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	0/1:204,218:0.52:422
chr21	47545021	rs73382469	G	A	1544.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:55,65:0.54:120
chr21	47545155	rs2839113	A	G	2463.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:90,103:0.53:193
chr21	47545346	rs2276101	C	T	6055.77	.	AC=1;AF=0.500;AN=2;DB;DP=654;set=Intersection	GT:AD:AF:DP	0/1:311,284:0.48:595
chr21	47545369	rs149954350	A	AC	8634.73	.	AC=1;AF=0.500;AN=2;DB;DP=859;set=Intersection	GT:AD:AF:DP	0/1:424,365:0.46:789
chr21	47549410	rs76978157	C	T	2223.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:101,106:0.51:207
chr21	47549510	rs7717	G	C	693.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:15,30:0.67:45
chr21	47552624	rs11554666	C	T	1120.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:38,50:0.57:88
chr21	47556809	rs1047209	C	T	2448.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:165,124:0.43:289
chr21	47557074	rs9284510	A	G	11627.77	.	AC=2;AF=1.00;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	1/1:0,431:1.00:431
chr21	47557222	rs10432965	G	A	9755.77	.	AC=1;AF=0.500;AN=2;DB;DP=911;set=Intersection	GT:AD:AF:DP	0/1:430,468:0.52:898
chr21	47558473	rs1047179	G	C	2610.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:101,119:0.54:220
chr21	47558586	rs60525628	A	G	11291.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.94;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:0,257:1.00:257
chr21	47558591	rs62214031	A	G	11158.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.64;SOR=0.759;set=HC	GT:AD:AF:DP	1/1:0,250:1.00:250
chr21	47558994	rs1980983	A	G	532.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:31,23:0.43:54
chr21	47565688	.	C	T	76.18	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.842;ClippingRankSum=-0.000;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.40;MQRankSum=-0.000;QD=15.24;ReadPosRankSum=-0.524;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:1,4:0.80:5
chr21	47565839	rs35208133	G	GC	1128.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.146;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.726;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.55;ReadPosRankSum=0.659;SOR=0.605;set=HC	GT:AD:AF:DP	0/1:63,44:0.41:107
chr21	47571383	rs34248722	C	CA	2923.73	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr21	47571845	rs61729391	C	T	1398.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:73,67:0.48:140
chr21	47581655	rs3827274	C	T	539.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.882;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.43;ReadPosRankSum=0.994;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:27,37:0.58:64
chr21	47581777	rs3747002	G	A	1449.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:79,65:0.45:144
chr21	47582102	rs3747003	C	T	838.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:40,36:0.47:76
chr21	47608580	rs2968	G	A	12422.77	.	AC=2;AF=1.00;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	1/1:0,460:1.00:460
chr21	47609510	rs9717	T	C	1269.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr21	47609677	rs914247	A	G	5980.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr21	47612466	rs2187120	A	G	10924.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.627;ClippingRankSum=0.000;DB;DP=239;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.68;MQRankSum=1.994;QD=45.90;ReadPosRankSum=1.319;SOR=0.429;set=HC	GT:AD:AF:DP	1/1:1,237:1.00:238
chr21	47612471	rs2187121	T	C	11713.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.584;ClippingRankSum=0.000;DB;DP=258;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.83;MQRankSum=1.885;QD=45.58;ReadPosRankSum=1.234;SOR=0.437;set=HC	GT:AD:AF:DP	1/1:1,256:1.00:257
chr21	47612512	rs146297977	C	CTG	13500.73	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr21	47614469	rs2254524	A	C	7564.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr21	47616071	rs7282841	G	C	7286.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.83;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,159:1.00:159
chr21	47616080	rs2839140	G	A	7899.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.02;SOR=1.661;set=HC	GT:AD:AF:DP	1/1:0,188:1.00:188
chr21	47628375	rs73144751	G	T	3730.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr21	47633789	rs9974665	C	G	14901.77	.	AC=2;AF=1.00;AN=2;DB;DP=565;set=Intersection	GT:AD:AF:DP	1/1:0,556:1.00:556
chr21	47635302	rs5844259	T	TC	1292.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr21	47635627	rs9980968	C	G	9101.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:0,332:1.00:332
chr21	47635713	rs11701729	G	A	9070.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	1/1:0,344:1.00:344
chr21	47635856	rs2839153	C	G	1240.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr21	47639492	rs2277826	C	G	17259.77	.	AC=2;AF=1.00;AN=2;DB;DP=636;set=Intersection	GT:AD:AF:DP	1/1:0,627:1.00:627
chr21	47641700	rs2839157	G	T	1428.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr21	47647618	rs369702446	GA	G	47.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.029;ClippingRankSum=0.000;DB;DP=415;ExcessHet=3.0103;FS=4.435;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.13;ReadPosRankSum=1.766;SOR=1.009;set=HC	GT:AD:AF:DP	0/1:294,64:0.18:358
chr21	47656712	rs2839166	T	C	4619.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr21	47662920	rs60691594	C	A	3406.73	.	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.73;SOR=1.659;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chr21	47678774	rs2839178	A	G	6782.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr21	47681127	rs2839180	T	C	1068.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr21	47686152	rs2839182	C	T	3381.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr21	47686174	rs4818831	T	C	2755.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr21	47687144	rs2839183	G	A	2276.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr21	47697650	rs17182664	A	G	3408.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr21	47703455	.	C	CA	196.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.265;ClippingRankSum=0.000;DP=224;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=2.041;QD=0.93;ReadPosRankSum=-0.597;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:172,40:0.19:212
chr21	47703649	rs11702450	G	A	3442.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr21	47704305	.	C	T	716.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.671;ClippingRankSum=0.000;DP=378;ExcessHet=3.0103;FS=1.050;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.91;ReadPosRankSum=-0.376;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:310,65:0.17:375
chr21	47704896	rs9975588	G	A	9304.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:0,326:1.00:326
chr21	47716230	rs1888539	T	C	4080.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr21	47717350	rs2839206	C	G	555.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr21	47717616	rs8651	G	A	4663.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr21	47717686	rs2839207	G	A	2855.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr21	47722391	rs1556337	A	G	2640.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr21	47722578	rs1974171	G	C	3186.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr21	47744037	rs3842460	CG	C	1255.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr21	47766139	rs9982233	T	C	3920.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr21	47766650	rs2839217	G	A	5239.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr21	47773103	rs2249057	C	A	9611.77	.	AC=2;AF=1.00;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	1/1:0,353:1.00:353
chr21	47777063	rs2839223	G	A	3803.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr21	47777222	rs2839224	A	G	855.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr21	47783796	rs8131546	T	C	7658.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr21	47786449	rs9637173	T	A	5236.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr21	47786494	rs2839226	C	T	8757.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:0,323:1.00:323
chr21	47786817	rs2839228	C	G	5401.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr21	47787002	rs6518289	T	C	5683.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr21	47810480	rs141693899	T	TGAC	1402.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr21	47811272	rs3737438	C	T	1117.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr21	47832989	rs4300932	G	A	1149.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:39,43:0.52:82
chr21	47836653	rs2070425	C	T	5686.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr21	47850405	rs2839257	C	T	4107.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr21	47850484	rs2070426	G	C	3978.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr21	47851753	rs2073376	A	G	9466.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:0,354:1.00:354
chr21	47852151	rs5844270	A	AG	2013.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr21	47856053	rs61735826	C	T	1977.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:81,90:0.53:171
chr21	47856106	rs2236616	C	A	2602.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr21	47859937	rs78656506	C	CT	3278.73	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr21	47862624	rs2839262	A	G	3224.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr21	47863757	rs2073380	A	C	5292.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr21	47864560	rs5741839	CT	C	993.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.749;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=6.709;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.00;ReadPosRankSum=2.076;SOR=1.989;set=HC	GT:AD:AF:DP	1/1:9,62:0.87:71
chr21	47878892	rs11701121	T	C	5278.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr21	47904585	rs718496	A	C	1566.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr21	47910523	rs7279002	A	G	7748.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:2,300:0.99:302
chr21	47910659	rs9976530	A	G	3076.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr21	47917047	rs11315869	CT	C	9176.73	.	AC=2;AF=1.00;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	1/1:0,406:1.00:406
chr21	47957332	rs2070432	G	A	12117.77	.	AC=2;AF=1.00;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	1/1:2,426:1.00:428
chr21	47959692	rs1008548	G	A	3553.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.15;SOR=3.116;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr21	47959698	rs1008549	C	T	3668.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.16;SOR=2.888;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr21	47961711	rs2070435	G	A	11931.77	.	AC=2;AF=1.00;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	1/1:2,457:1.00:459
chr21	47971539	rs2255526	G	A	6163.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr21	47974582	rs1107065	A	G	4553.77	.	AC=1;AF=0.500;AN=2;DB;DP=576;set=Intersection	GT:AD:AF:DP	0/1:333,239:0.42:572
chr21	47978321	rs34920477	G	GC	13049.73	.	AC=2;AF=1.00;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	1/1:0,354:1.00:354
chr21	47980570	rs2070429	A	G	8789.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr21	47985554	rs143626098	T	TG	1752.73	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:87,62:0.42:149
chr21	47986633	rs3819044	C	A	3621.77	.	AC=1;AF=0.500;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	0/1:187,174:0.48:361
chr21	48019239	rs9722	G	A	1354.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:67,66:0.50:133
chr21	48022144	rs2839356	T	C	1439.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:77,66:0.46:143
chr21	48022175	rs80199493	A	G	2231.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:124,104:0.46:228
chr21	48022375	rs2186358	C	A	1388.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:82,67:0.45:149
chr22	16157603	rs370790235	G	C	218.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.11;QD=21.88;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr22	16157622	rs374192809	G	C	147.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.71;QD=21.11;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr22	16157648	rs373638938	CCTT	C	129	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.59;QD=32.25;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr22	16157883	rs368849066	T	C	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.407;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.47;MQRankSum=-4.314;QD=0.77;ReadPosRankSum=0.721;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:37,8:0.18:45
chr22	16157913	.	T	G	51.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.898;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.99;MQRankSum=-3.286;QD=1.85;ReadPosRankSum=-1.247;SOR=0.883;set=HC	GT:AD:AF:DP	0/1:22,6:0.21:28
chr22	16157982	.	G	T	110.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.480;ClippingRankSum=-0.000;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.67;MQRankSum=-1.180;QD=12.31;ReadPosRankSum=-0.120;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:3,6:0.67:9
chr22	17054103	rs4008588	G	A	2548.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr22	17054291	rs73159808	T	C	4777.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:1,187:0.99:188
chr22	17054332	rs143558414	T	C	4673.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:1,179:0.99:180
chr22	17060419	rs142683207	T	C	2106.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:2,76:0.97:78
chr22	17063359	rs2006108	A	G	3459.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr22	17072483	rs2236639	A	G	12059.77	.	AC=2;AF=1.00;AN=2;DB;DP=451;set=Intersection	GT:AD:AF:DP	1/1:0,446:1.00:446
chr22	17073066	rs5747988	A	G	7385.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr22	17156061	rs8142573	A	G	2603.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:2,97:0.98:99
chr22	17178479	rs139263784	C	A	33.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=38.33;QD=16.87;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr22	17178601	rs116224412	G	A	1145.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.90;QD=23.87;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr22	17326914	rs165927	G	A	3571.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr22	17327068	rs165588	A	G	1582.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr22	17565888	rs13053694	C	A	9199.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:0,349:1.00:349
chr22	17565932	rs917864	T	C	11716.77	.	AC=2;AF=1.00;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	1/1:0,434:1.00:434
chr22	17565974	rs917865	G	C	8642.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,319:1.00:319
chr22	17566206	rs2270241	G	T	1113.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr22	17566229	rs2270242	T	A	804.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr22	17586471	rs2241046	C	T	2575.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr22	17586610	rs11089412	T	G	838.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr22	17586614	rs200937197	G	GT	828.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr22	17589152	rs41372049	T	G	1106.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr22	17600148	rs9605220	A	G	513.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr22	17601921	.	G	C	921.77	.	AC=2;AF=1.00;AN=2;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr22	17602839	rs5992629	G	A	3720.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr22	17623880	rs34058953	G	GC	2467.73	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr22	17629544	rs3214349	G	GA	904.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr22	17630389	rs1034858	G	C	781.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr22	17630486	rs1034859	C	A	2275.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr22	17640176	.	GC	G	137.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.469;ClippingRankSum=0.000;DP=66;ExcessHet=3.0103;FS=3.021;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.42;ReadPosRankSum=2.769;SOR=0.299;set=HC	GT:AD:AF:DP	0/1:44,13:0.23:57
chr22	17669151	rs2231496	C	T	1684.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr22	17669406	rs9619005	G	C	987.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr22	17671133	rs2286348	C	G	6938.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr22	17956759	rs4819593	C	G	2639.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr22	17978600	rs7284169	G	C	4285.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr22	18027817	rs149314645	CTT	C,CT	535.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.610;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=12.46;ReadPosRankSum=-0.379;SOR=0.765;set=HC	GT:AD:AF:DP	1/2:7,18,18:0.42,0.42:43
chr22	18030096	rs66840782	TA	T	529.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.304;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=0.706;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.330;QD=3.33;ReadPosRankSum=0.897;SOR=0.777;set=HC	GT:AD:AF:DP	0/1:90,69:0.43:159
chr22	18032459	rs201209827	GTTTTTTTTTTTTTTT	G,GT	3308.73	.	AC=1,1;AF=0.500,0.500;AN=2;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=9.233;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.12;MQRankSum=0.236;QD=39.86;SOR=1.379;set=HC	GT:AD:AF:DP	1/2:2,57,24:0.69,0.29:83
chr22	18072333	rs34661208	A	ACTT	5191.73	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr22	18077386	rs35683311	CA	C	3153.73	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:8,162:0.95:170
chr22	18081136	rs2287228	G	A	4786.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr22	18081156	rs2072555	G	T	3925.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr22	18082669	rs5992075	A	G	383.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr22	18084001	rs5747254	T	G	3127.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr22	18084033	rs3747023	C	T	2527.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr22	18102012	rs4819615	C	G	283.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr22	18111431	rs7751	T	C	5623.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:3,212:0.99:215
chr22	18111556	rs5746448	A	C	1083.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:1,38:0.97:39
chr22	18171650	rs5013026	C	T	575.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr22	18178859	rs2257083	C	T	3501.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr22	18209613	rs4488761	A	G	5588.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr22	18218311	rs8190354	G	A	3036.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr22	18218464	rs181382	T	C	1857.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr22	18218475	rs181383	C	G	1668.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr22	18222263	rs181390	A	G	5149.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:2,196:0.99:198
chr22	18233000	rs181405	G	A	2241.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr22	18257138	rs443912	T	G	3261.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.09;SOR=0.709;set=HC	GT:AD:AF:DP	1/1:0,125:1.00:125
chr22	18300240	rs5992854	T	C	6927.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr22	18300594	rs11704160	G	A	6488.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr22	18300879	rs11704809	G	A	12298.77	.	AC=2;AF=1.00;AN=2;DB;DP=479;set=Intersection	GT:AD:AF:DP	1/1:1,474:1.00:475
chr22	18301693	rs8135914	T	C	3601.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr22	18304392	rs2305006	G	T	423.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr22	18304695	rs5992112	A	G	2813.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr22	18310363	rs5992872	C	T	3059.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.34;SOR=0.844;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr22	18310367	rs5992121	T	C	3133.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.52;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr22	18310700	rs143017613	T	TACAC,TAC	971.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=32;set=Intersection	GT:AF:DP	1/1:1.00:21
chr22	18314989	rs5992123	C	T	1766.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr22	18317423	rs11705197	C	T	791.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr22	18370066	rs4819472	C	A	4550.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr22	18609065	rs2234329	G	T	2209.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:2,82:0.98:84
chr22	18775403	rs201208860	G	A	635.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.780;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=39.66;MQRankSum=0.909;QD=15.51;ReadPosRankSum=-0.169;SOR=1.075;set=HC	GT:AD:AF:DP	0/1:17,24:0.59:41
chr22	18896169	rs426065	C	T	3642.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr22	18896189	rs425576	T	C	4772.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr22	18897416	rs436638	C	T	376.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr22	18898289	rs441862	G	C	3338.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr22	18898874	.	G	A	368	.	AC=1;AF=0.500;AN=2;BRF=0.29;FR=0.5000;HP=1;HapScore=2;MGOF=22;MMLQ=29;MQ=57.2;NF=4;NR=16;PP=368;QD=20.1385606274;SC=TGGGGGCAGAGGCTCAGATTC;SbPval=0.8;Source=Platypus;TC=30;TCF=8;TCR=22;TR=20;WE=18898882;WS=18898865;set=Platypus	GT:AD:AF:DP	1/0:10,20:0.67:30
chr22	18898908	.	A	G	230	.	AC=1;AF=0.500;AN=2;BRF=0.38;FR=0.5000;HP=1;HapScore=2;MGOF=31;MMLQ=28;MQ=57.39;NF=2;NR=12;PP=230;QD=18.9122294677;SC=TGGGGGCAGAAGCTCAGATTC;SbPval=0.88;Source=Platypus;TC=28;TCF=7;TCR=21;TR=14;WE=18898916;WS=18898898;set=Platypus	GT:AD:AF:DP	0/1:14,14:0.50:28
chr22	18899016	rs428224	G	A	782.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr22	18900669	rs383964	A	G	922.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr22	18900750	rs372055	G	A	1816.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr22	18901004	rs450046	C	T	5037.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr22	18901090	rs385440	A	G	1724.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr22	18904414	rs455072	A	G	3098.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr22	18904606	rs375115	T	G	1343.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr22	18905842	rs2870983	C	T	859.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr22	18905978	rs16983466	G	A	1761.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr22	18907124	rs1076466	G	A	4161.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:1,143:0.99:144
chr22	18908874	.	A	C	545.77	.	AC=2;AF=1.00;ALERT;AN=2;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.98;QD=41.98;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr22	18908875	rs1808320	A	G	545.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.98;QD=41.98;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr22	19026289	rs113193119	G	A	2252.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr22	19026613	rs2072123	A	G	1983.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr22	19028476	rs2073775	T	C	7556.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.98;SOR=1.433;set=HC	GT:AD:AF:DP	1/1:0,168:1.00:168
chr22	19028480	rs2073774	T	C	7832.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.76;SOR=1.395;set=HC	GT:AD:AF:DP	1/1:0,179:1.00:179
chr22	19034079	rs715539	A	C	1145.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr22	19034240	rs2012929	A	G	1925.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr22	19048413	rs2238739	A	G	5532.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr22	19048436	rs62221717	G	A	5938.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr22	19050599	rs111427599	T	TCCATGTC	6403.73	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr22	19050635	rs5993488	G	A	8498.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr22	19050878	rs9617765	A	G	2624.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr22	19055542	rs17743576	T	C	530.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr22	19077049	rs2800960	C	T	2093.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr22	19109609	rs62223868	A	C	2672.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr22	19109753	rs11550628	A	G	4058.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr22	19109764	rs11550626	A	G	3709.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr22	19109812	rs11550627	A	G	1250.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr22	19126014	rs117542817	C	T	964.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr22	19137658	rs34341950	G	A	154.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.35;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr22	19170889	rs35109488	G	A	3141.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr22	19189003	rs11386977	A	AC	5791.73	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr22	19217613	rs2800963	C	T	994.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.25;SOR=2.400;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr22	19217617	rs113338080	C	T	961.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.72;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr22	19217621	rs9306213	G	T	871.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.59;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr22	19318622	rs1210690	T	C	439.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr22	19349590	rs916594	G	C	608.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:1,20:0.95:21
chr22	19371052	rs34292276	C	T	2166.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:2,83:0.98:85
chr22	19419093	rs8140291	A	G	2515.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr22	19455376	rs5746742	C	T	948.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr22	19455836	rs756658	A	G	2121.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr22	19455871	rs756657	A	C	1749.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr22	19458224	rs5993648	C	T	372.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr22	19462466	rs5746744	C	G	398.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr22	19467652	rs5748232	T	C	8942.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	1/1:4,334:0.99:338
chr22	19468655	rs5993650	C	T	1787.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr22	19470493	.	CT	C	99.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.417;ClippingRankSum=0.000;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=1.931;QD=1.69;ReadPosRankSum=0.987;SOR=0.559;set=HC	GT:AD:AF:DP	0/1:42,17:0.29:59
chr22	19471609	rs737858	A	G	1324.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr22	19492692	rs8136840	C	G	284.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr22	19495967	rs2073736	G	A	1734.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr22	19504318	rs2073733	G	A	6070.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr22	19504470	rs2073732	T	C	10808.77	.	AC=2;AF=1.00;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	1/1:1,401:1.00:402
chr22	19506456	rs2073760	G	T	1148.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr22	19511925	rs885985	G	A	5735.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr22	19702168	.	C	CTGCCCGCG	6068.73	.	AC=2;AF=1.00;AN=2;DP=154;set=Intersection	GT:AD:AF:DP	1/1:2,134:0.99:136
chr22	19712094	rs1059196	C	T	168.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr22	19747082	rs737868	G	C	2050.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr22	19751829	rs2301558	C	T	11155.77	.	AC=2;AF=1.00;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	1/1:0,420:1.00:420
chr22	19766782	rs4819522	C	T	4590.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr22	19794366	rs737860	C	A	1736.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr22	19808769	rs5748449	C	T	2522.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr22	19868218	rs1139793	A	G	4726.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:1,173:0.99:174
chr22	19870831	rs2239893	C	T	999.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr22	19882492	rs35599379	CA	C	211.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.800;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.56;ReadPosRankSum=-0.989;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:7,21:0.75:28
chr22	19882630	rs5993856	G	A	4586.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr22	19882984	rs5992495	T	G	5852.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:1,220:1.00:221
chr22	19885548	rs12169091	G	T	3321.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr22	19886797	rs8142006	G	A	1172.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr22	19898837	rs885987	A	G	3560.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr22	19902896	rs2073771	C	T	1486.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr22	19905802	rs756661	G	A	3577.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr22	19906306	rs3747067	C	G	518.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.30;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr22	19907099	rs5748469	C	A	7252.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:1,179:0.99:180
chr22	19907118	rs5748470	G	A	6600.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:1,151:0.99:152
chr22	19907192	rs5748471	A	G	1972.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr22	19918723	rs79960807	G	A	2653.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr22	19921003	rs5746847	T	C	3180.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr22	19950235	rs4633	C	T	5917.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:2,225:0.99:227
chr22	19951271	rs4680	G	A	8371.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:2,315:0.99:317
chr22	19954916	rs113895332	A	AT	302.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.072;ClippingRankSum=0.000;DB;DP=285;ExcessHet=3.0103;FS=2.084;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.20;ReadPosRankSum=-1.937;SOR=0.877;set=HC	GT:AD:AF:DP	0/1:200,52:0.21:252
chr22	19956262	rs362204	G	GC	1364.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:3,50:0.94:53
chr22	19958632	.	C	T	4545.77	.	AC=2;AF=1.00;AN=2;DP=169;set=Intersection	GT:AD:AF:DP	1/1:1,166:0.99:167
chr22	19958669	rs165849	G	A	8299.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:1,308:1.00:309
chr22	19959366	rs165824	G	A	4742.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr22	19959473	rs165815	C	T	8259.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr22	19959955	rs2073744	A	G	7466.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:2,257:0.99:259
chr22	19960184	rs71313931	C	G	3740.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.18;SOR=1.854;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr22	19960188	rs2518823	T	C	3923.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.27;SOR=1.911;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr22	19960198	rs71313932	G	C	4168.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.87;SOR=1.586;set=HC	GT:AD:AF:DP	1/1:0,102:1.00:102
chr22	19964418	rs2240718	T	G	3502.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr22	19965501	rs139920129	G	A	4102.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr22	19968971	rs2073748	G	A	2921.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr22	19969075	rs2073747	A	G	4362.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr22	19969106	rs2240717	A	G	4439.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr22	19974583	rs7284393	A	G	6716.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:2,259:0.99:261
chr22	19974654	rs7292055	G	A	2331.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:3,89:0.97:92
chr22	19978022	rs4819527	C	T	3635.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr22	20020889	rs9605051	T	C	4437.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr22	20109677	rs11705021	G	A	944.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr22	20136263	rs175181	G	A	2599.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr22	20136744	.	C	G	5972.77	.	AC=2;AF=1.00;AN=2;DP=224;set=Intersection	GT:AD:AF:DP	1/1:2,222:0.99:224
chr22	20255020	rs854929	T	C	3917.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:1,134:0.99:135
chr22	20378593	rs79418534	A	G	187.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.06;QD=26.83;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr22	20378965	rs55698413	T	C	153.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.26;QD=21.97;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr22	20379008	rs62218641	G	A	152.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.26;QD=21.83;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr22	20379066	rs56006201	C	T	137.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.26;QD=19.69;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr22	20385650	rs370385982	G	A	53.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.39;QD=17.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr22	20385706	rs79640249	G	T	1257.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.28;QD=24.19;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr22	20385739	rs146242498	TTGTC	T	2752.73	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.87;QD=44.40;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr22	20394502	rs201085493	C	T	169.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.51;QD=21.22;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr22	20394526	rs201289136	C	T	169.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.51;QD=21.22;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr22	20718525	rs2277833	T	C	3255.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.41;QD=31.92;SOR=2.925;set=HC	GT:AD:AF:DP	1/1:0,102:1.00:102
chr22	20744977	rs78154936	A	G	8109.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr22	20745206	rs10683060	C	CAT	4131.73	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr22	20749051	rs112010963	C	CT	1182.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.268;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.44;MQRankSum=1.462;QD=11.26;ReadPosRankSum=0.020;SOR=0.829;set=HC	GT:AD:AF:DP	0/1:24,81:0.77:105
chr22	20755098	rs1990249	A	G	5503.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr22	20755226	rs4581986	A	G	856.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr22	20759534	rs5761555	A	G	1232.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr22	20779946	rs759612	CG	GC	826.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr22	20779973	rs5844418	C	CG	454.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr22	20780024	rs5844420	G	GC	322.75	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.11;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr22	20780029	rs370015834	G	GC	331.73	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=41.47;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr22	20780031	rs2329378	G	C	364.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.53;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr22	20780091	rs759610	C	G	2156.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.93;SOR=1.562;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr22	20780097	rs759609	G	C	2317.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.14;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr22	20783721	rs8137004	C	T	1484.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr22	20811930	rs362087	C	A	512.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr22	20843885	rs165613	T	G	588.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr22	20862646	rs5750324	T	G	6846.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:2,259:0.99:261
chr22	20891259	rs2269830	C	A	273.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr22	20891545	rs4821915	A	G	1255.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr22	20891568	rs2269831	G	A	742.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr22	20920813	rs71769813	ACAG	A	309.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.350;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=2.082;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=2.705;QD=1.99;ReadPosRankSum=-1.325;SOR=0.418;set=HC	GT:AD:AF:DP	0/1:137,19:0.12:156
chr22	20938775	rs165747	T	C	2185.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr22	21034809	rs28668558	G	A	1202.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr22	21213380	rs1061063	C	T	6972.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr22	21213416	rs1061064	A	G	10758.77	.	AC=2;AF=1.00;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	1/1:0,389:1.00:389
chr22	21311531	rs81027	C	T	2183.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr22	21311721	rs178251	T	G	6836.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr22	21322325	rs11334069	TC	T	6303.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.527;ClippingRankSum=0.000;DB;DP=272;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.24;MQRankSum=0.239;QD=29.05;ReadPosRankSum=-0.034;SOR=4.930;set=HC	GT:AD:AF:DP	1/1:2,215:0.99:217
chr22	21322351	rs178254	T	C	5373.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr22	21322376	rs74610147	T	G	6631.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.07;QD=44.51;SOR=7.798;set=HC	GT:AD:AF:DP	1/1:0,149:1.00:149
chr22	21322377	rs75810376	C	G	6631.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.07;QD=45.42;SOR=7.757;set=HC	GT:AD:AF:DP	1/1:0,146:1.00:146
chr22	21322380	rs71317868	A	G	6440.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.08;QD=48.07;SOR=7.584;set=HC	GT:AD:AF:DP	1/1:0,134:1.00:134
chr22	21322383	rs432390	A	G	5978.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.08;QD=46.35;SOR=7.507;set=HC	GT:AD:AF:DP	1/1:0,129:1.00:129
chr22	21327834	rs178265	C	G	1671.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr22	21329123	rs733455	A	G	1061.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr22	21331043	rs178269	A	T	5550.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr22	21331950	rs178276	C	G	1421.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr22	21334873	rs13057408	G	C	798.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr22	21337415	rs178281	C	G	2381.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr22	21340088	rs178287	T	C	3940.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr22	21341677	rs58365624	C	CA	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.313;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.58;ReadPosRankSum=0.159;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:50,15:0.23:65
chr22	21354970	rs426938	C	G	9083.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	1/1:0,339:1.00:339
chr22	21356029	rs2075269	T	C	5143.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr22	21356538	rs368989	A	T	2363.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr22	21356566	rs369250	A	G	1450.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr22	21356824	rs28372939	G	A	3413.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.67;SOR=0.802;set=HC	GT:AD:AF:DP	1/1:0,133:1.00:133
chr22	21356892	rs66918515	AAGAC	A	3543.73	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr22	21356925	rs9625292	T	A	1424.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.22;QD=28.50;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr22	21357119	rs71314757	G	A	2983.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr22	21365668	rs1210564	A	G	115.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=23.18;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr22	21369454	rs71314758	A	G	867.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr22	21372405	rs2073598	G	T	11853.77	.	AC=2;AF=1.00;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	1/1:0,452:1.00:452
chr22	21377958	rs929671	A	C	1128.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:1,38:0.97:39
chr22	21380064	rs1477145	G	A	6431.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr22	21383312	rs2075279	G	A	538.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr22	21384578	rs2270384	C	T	2209.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:2,82:0.98:84
chr22	21386019	rs2072550	G	A	4489.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr22	21388605	rs2541956	T	C	976.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr22	21411598	rs46148	T	C	830.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr22	21576356	rs201958718	T	G	40.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=20.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr22	21797094	rs486362	C	G	1119.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=34.19;QD=44.79;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr22	21797102	rs1210228	G	C	1119.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=34.30;QD=43.07;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr22	21800042	rs467181	T	C	9286.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	1/1:0,349:1.00:349
chr22	21800444	rs128477	T	C	6237.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr22	21822001	rs183213118	A	G	92.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=37.95;QD=23.01;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr22	21822372	rs66498338	CAGGATCCGGGGGT	C	98.25	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.10;QD=32.75;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr22	21822725	rs430214	T	C	1413.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr22	21822744	rs395295	G	C	1022.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr22	21822774	rs452545	T	G	107.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=38.37;QD=26.76;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr22	21829480	rs402694	G	T	352.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.61;QD=27.14;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr22	21829507	rs140118179	G	A	826.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.69;QD=45.93;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr22	21829513	rs113567369	TTGTC	T	862.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.39;QD=43.14;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr22	21832031	.	A	G	107.28	.	AC=2;AF=1.00;AN=2;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.03;QD=35.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr22	21832041	.	G	A	186.84	.	AC=2;AF=1.00;AN=2;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.37;QD=31.14;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr22	21842655	rs143994138	C	T	1155.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.510;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.81;MQRankSum=-0.118;QD=30.41;ReadPosRankSum=-0.489;SOR=5.892;set=HC	GT:AD:AF:DP	1/1:1,37:0.97:38
chr22	21846327	rs367705001	GGC	G	114.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.068;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=5.441;MLEAC=1;MLEAF=0.500;MQ=45.04;MQRankSum=-1.180;QD=16.39;ReadPosRankSum=-0.180;SOR=3.611;set=HC	GT:AD:AF:DP	0/1:2,5:0.71:7
chr22	21988599	rs371513	G	A	8459.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chr22	22007143	rs395006	G	A	616.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr22	22007370	rs372150	T	C	5165.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:3,198:0.99:201
chr22	22024507	rs402225	G	A	771.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr22	22025476	rs108815	A	G	3083.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:2,113:0.98:115
chr22	22041438	rs436496	C	T	2533.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr22	22048862	rs5999098	C	T	2773.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr22	22049783	rs12484060	C	T	3575.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr22	22055280	rs710172	A	G	2545.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:1,87:0.99:88
chr22	22055394	rs1860	A	G	8192.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr22	22055581	rs861816	C	A	989.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr22	22058355	rs2236643	A	G	4523.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr22	22162126	rs3729910	A	G	1792.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr22	22287862	rs2027789	G	A	5915.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr22	22287964	rs2027790	T	C	6181.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:2,242:0.99:244
chr22	22288309	rs94194	T	C	443.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr22	22312292	rs71316716	A	G	73.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.10;QD=24.43;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr22	22313829	rs239918	A	C	1139.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr22	22330082	rs239927	T	C	1641.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr22	22517026	rs738885	T	C	9044.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:0,327:1.00:327
chr22	22517126	rs73878259	G	A	3449.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr22	22550339	rs9623052	G	C	8463.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr22	22550378	rs377765757	G	A	8160.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:2,301:0.99:303
chr22	22550510	rs2073448	T	G	8987.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr22	22550760	rs5757323	A	G	2579.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr22	22556270	rs5995639	T	C	9935.77	.	AC=2;AF=1.00;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	1/1:2,368:0.99:370
chr22	22556368	rs9306341	C	T	7200.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:1,261:1.00:262
chr22	22556662	rs2330029	A	T	2113.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr22	22569640	rs6001415	T	G	4202.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr22	22673639	rs737765	T	C	5369.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.19;SOR=0.894;set=HC	GT:AD:AF:DP	1/1:0,205:1.00:205
chr22	22676970	rs6001803	T	C	2226.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr22	22681721	rs12484322	T	C	5185.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr22	22681765	rs3819309	G	A	6473.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr22	22697490	rs6519245	C	A	717.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:1,25:0.96:26
chr22	22698027	rs1894246	A	G	5209.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr22	22707275	rs5995854	C	A	1529.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr22	22712021	.	C	CCGGGGA	1267.73	.	AC=2;AF=1.00;AN=2;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr22	22712027	rs66722503	GA	G	1252.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr22	22712261	rs3753077	C	T	3709.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.74;QD=31.71;SOR=1.208;set=HC	GT:AD:AF:DP	1/1:0,117:1.00:117
chr22	22712467	rs5757973	T	G	11338.77	.	AC=2;AF=1.00;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	1/1:0,415:1.00:415
chr22	22712742	rs3753078	A	G	1673.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr22	22723864	rs9611592	G	A	1215.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr22	22724135	rs11324703	GT	G	2666.73	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr22	22724341	rs9607803	A	C	5797.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:1,216:1.00:217
chr22	22724394	rs7292000	T	C	4704.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr22	22730634	rs2009587	G	A	11980.77	.	AC=2;AF=1.00;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	1/1:3,448:0.99:451
chr22	22764624	rs114914673	C	T	2175.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:3,79:0.96:82
chr22	22782394	rs165704	A	G	11926.77	.	AC=2;AF=1.00;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	1/1:0,436:1.00:436
chr22	22842206	rs11109	T	C	6703.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr22	22842957	rs2236729	T	G	7261.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr22	22843118	rs2236730	C	T	5842.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr22	22868211	rs361558	G	A	632.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr22	22868493	rs361666	G	T	11302.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.026;ClippingRankSum=0.000;DB;DP=256;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=45.21;ReadPosRankSum=-0.838;SOR=1.046;set=HC	GT:AD:AF:DP	1/1:2,248:0.99:250
chr22	22868497	rs361762	G	C	11585.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.007;ClippingRankSum=0.000;DB;DP=279;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=42.59;ReadPosRankSum=-0.965;SOR=0.994;set=HC	GT:AD:AF:DP	1/1:2,270:0.99:272
chr22	22868773	rs361737	G	A	8046.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.47;QD=43.97;SOR=0.726;set=HC	GT:AD:AF:DP	1/1:0,183:1.00:183
chr22	22868776	rs362173	G	A	8045.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.39;QD=45.46;SOR=0.751;set=HC	GT:AD:AF:DP	1/1:0,177:1.00:177
chr22	22869123	rs362003	T	C	11224.77	.	AC=2;AF=1.00;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	1/1:3,418:0.99:421
chr22	22869209	rs362124	C	G	17701.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.977;ClippingRankSum=0.000;DB;DP=409;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=43.71;ReadPosRankSum=-1.059;SOR=0.708;set=HC	GT:AD:AF:DP	1/1:2,403:1.00:405
chr22	22869218	rs362132	T	C	17525.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.020;ClippingRankSum=0.000;DB;DP=405;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=43.81;ReadPosRankSum=-0.580;SOR=0.755;set=HC	GT:AD:AF:DP	1/1:2,398:0.99:400
chr22	22869538	rs361611	A	G	6723.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.43;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,148:1.00:148
chr22	22869545	rs361580	T	G	6929.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.59;SOR=0.923;set=HC	GT:AD:AF:DP	1/1:0,152:1.00:152
chr22	22869548	rs362011	T	C	6809.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.10;SOR=1.007;set=HC	GT:AD:AF:DP	1/1:0,151:1.00:151
chr22	22869649	rs361721	G	C	5584.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr22	22869742	rs361959	C	A	6928.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.25;SOR=1.082;set=HC	GT:AD:AF:DP	1/1:0,264:1.00:264
chr22	22899234	rs1129172	A	G	3736.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:2,145:0.99:147
chr22	22899363	rs8139318	GA	AG	3739.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr22	22899414	rs2283800	A	G	945.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr22	22930770	rs6002909	A	G	8354.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr22	22989256	rs2904923	A	G	5050.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr22	23029263	rs443102	T	C	14092.77	.	AC=2;AF=1.00;AN=2;DB;DP=518;set=Intersection	GT:AD:AF:DP	1/1:0,510:1.00:510
chr22	23029374	rs451369	G	A	13252.77	.	AC=2;AF=1.00;AN=2;DB;DP=505;set=Intersection	GT:AD:AF:DP	1/1:1,494:1.00:495
chr22	23029526	rs3205084	G	C	6662.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr22	23029698	rs443756	T	C	10897.77	.	AC=2;AF=1.00;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	1/1:2,414:1.00:416
chr22	23029718	rs199561156	A	T	634.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.455;ClippingRankSum=0.000;DB;DP=445;ExcessHet=3.0103;FS=4.756;MLEAC=1;MLEAF=0.500;MQ=59.26;MQRankSum=-9.106;QD=1.43;ReadPosRankSum=-4.524;SOR=1.015;set=HC	GT:AD:AF:DP	0/1:369,74:0.17:443
chr22	23029846	rs200665672	T	C	835.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:105,48:0.31:153
chr22	23029871	.	C	T	716.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.433;ClippingRankSum=0.000;DP=100;ExcessHet=3.0103;FS=1.067;MLEAC=1;MLEAF=0.500;MQ=59.24;MQRankSum=-4.375;QD=7.39;ReadPosRankSum=-1.192;SOR=0.490;set=HC	GT:AD:AF:DP	0/1:73,24:0.25:97
chr22	23029876	.	C	T	673.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.519;ClippingRankSum=0.000;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.18;MQRankSum=-4.556;QD=7.49;ReadPosRankSum=-1.004;SOR=0.518;set=HC	GT:AD:AF:DP	0/1:69,21:0.23:90
chr22	23055329	rs35555516	C	CTCAT	832.80	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:2,19:0.90:21
chr22	23055440	rs1008910	C	A	4189.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:2,157:0.99:159
chr22	23055752	rs2304533	C	T	1532.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr22	23063645	rs11090173	T	G	5637.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr22	23077555	rs4822296	T	C	5839.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:3,209:0.99:212
chr22	23089759	rs2040563	A	T	5451.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:2,203:0.99:205
chr22	23089826	rs1978004	G	A	9772.77	.	AC=2;AF=1.00;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	1/1:6,368:0.98:374
chr22	23089857	rs2040564	G	A	15021.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.449;ClippingRankSum=0.000;DB;DP=356;ExcessHet=3.0103;FS=1.726;MLEAC=2;MLEAF=1.000;MQ=60.03;MQRankSum=0.143;QD=42.31;ReadPosRankSum=0.950;SOR=0.582;set=HC	GT:AD:AF:DP	1/1:5,350:0.99:355
chr22	23089865	rs2040565	A	G	14315.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.215;ClippingRankSum=0.000;DB;DP=336;ExcessHet=3.0103;FS=2.133;MLEAC=2;MLEAF=1.000;MQ=60.03;MQRankSum=0.127;QD=42.73;ReadPosRankSum=-0.638;SOR=0.469;set=HC	GT:AD:AF:DP	1/1:3,332:0.99:335
chr22	23089941	rs3087123	ACT	A	13668.73	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:2,325:0.99:327
chr22	23090423	rs34605189	G	C	4360.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr22	23090438	rs56223989	A	G	3054.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr22	23090468	rs58198190	C	T	2106.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.71;QD=41.31;SOR=2.004;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr22	23090475	rs58580735	T	C	1856.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.93;QD=46.42;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr22	23101247	rs4822303	GC	AT	5033.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr22	23101280	rs1894244	C	T	6590.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr22	23101301	rs4822305	A	G	6967.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr22	23101347	rs1894245	G	A	4666.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr22	23101559	rs4134484	G	T	4644.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:1,164:0.99:165
chr22	23114239	rs8138758	T	C	2574.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr22	23114285	rs8138785	T	C	5065.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr22	23114327	rs6003299	T	C	10796.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr22	23114350	rs5996382	A	G	11417.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr22	23114748	rs377036128	CTT	C	1776.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.207;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=21.67;ReadPosRankSum=0.601;SOR=1.230;set=HC	GT:AD:AF:DP	1/1:10,72:0.88:82
chr22	23114938	rs2073450	C	A	9713.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;MQ=59.99;set=Intersection	GT:AD:AF:DP	1/1:0,355:1.00:355
chr22	23115001	rs2073452	A	G	13409.77	.	AC=2;AF=1.00;AN=2;DB;DP=494;MQ=59.99;set=Intersection	GT:AD:AF:DP	1/1:2,491:1.00:493
chr22	23165839	rs5844528	G	GC	4830.73	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr22	23241705	rs62218846	G	A	1519.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.16;QD=31.66;SOR=3.352;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr22	23241753	rs202036213	T	TA	7956.73	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:4,176:0.98:180
chr22	23241772	rs148186519	T	C	8730.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:4,213:0.98:217
chr22	23241864	rs463830	G	A	3579.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:2,135:0.99:137
chr22	23243489	rs139432625	AC	A	249.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.490;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=39.51;MQRankSum=0.146;QD=12.49;ReadPosRankSum=1.749;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:9,11:0.55:20
chr22	23243496	rs1062423	A	C	206.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.958;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=39.49;MQRankSum=0.000;QD=10.34;ReadPosRankSum=-1.564;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:11,9:0.45:20
chr22	23247028	rs464478	A	G	7385.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr22	23247142	rs201495120	T	C	3169.77	.	AC=1;AF=0.500;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	0/1:264,154:0.37:418
chr22	23247169	.	TG	GT	2278.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.543;ClippingRankSum=0.000;DP=300;ExcessHet=3.0103;FS=106.620;JOINED;MLEAC=1;MLEAF=0.500;MQ=56.35;MQRankSum=-16.297;QD=7.62;ReadPosRankSum=-2.801;SOR=4.898;set=HC	GT:AD:AF:DP	0/1:226,73:0.24:299
chr22	23247174	rs17851780	G	A	1964.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.261;ClippingRankSum=0.000;DB;DP=274;ExcessHet=3.0103;FS=132.435;MLEAC=1;MLEAF=0.500;MQ=56.23;MQRankSum=-16.187;QD=7.20;ReadPosRankSum=-2.052;SOR=7.868;set=HC	GT:AD:AF:DP	0/1:213,60:0.22:273
chr22	23247234	rs28665294	G	A	210.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.504;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=21.429;MLEAC=1;MLEAF=0.500;MQ=55.47;MQRankSum=-8.345;QD=1.55;ReadPosRankSum=-1.892;SOR=3.451;set=HC	GT:AD:AF:DP	0/1:116,20:0.15:136
chr22	23248845	rs71815924	AC	A	150.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.161;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=1.206;MLEAC=1;MLEAF=0.500;MQ=45.28;MQRankSum=-1.775;QD=2.47;ReadPosRankSum=-0.579;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:46,15:0.25:61
chr22	23248852	rs200606818	A	C	192.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.069;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=13.560;MLEAC=1;MLEAF=0.500;MQ=44.85;MQRankSum=-0.570;QD=3.38;ReadPosRankSum=-0.567;SOR=2.948;set=HC	GT:AD:AF:DP	0/1:43,14:0.25:57
chr22	23256464	rs463185	G	C	8429.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr22	23260277	rs61196692	GC	G	67.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.397;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=2.364;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.69;ReadPosRankSum=-0.101;SOR=0.150;set=HC	GT:AD:AF:DP	0/1:32,8:0.20:40
chr22	23260278	rs10570168	C	G	545.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.672;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=8.160;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.64;ReadPosRankSum=-0.547;SOR=2.584;set=HC	GT:AD:AF:DP	0/1:10,30:0.75:40
chr22	23260507	rs410521	T	A	734.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr22	23262100	rs114846306	C	T	801.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr22	23263602	rs373405	C	T	3299.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr22	23438191	rs1805058	C	T	13122.77	.	AC=2;AF=1.00;AN=2;DB;DP=504;set=Intersection	GT:AD:AF:DP	1/1:0,496:1.00:496
chr22	23480962	rs5759598	T	G	792.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr22	23481133	rs58874302	GAA	G,GA	4189.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.273;ClippingRankSum=0.000;DB;DP=243;ExcessHet=3.0103;FS=2.294;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.27;MQRankSum=0.676;QD=19.04;ReadPosRankSum=-0.065;SOR=0.418;set=HC	GT:AD:AF:DP	1/2:16,165,39:0.75,0.18:220
chr22	23482460	rs4822360	A	G	1379.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr22	23482718	rs4822361	C	T	742.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr22	23482744	rs4822362	C	A	432.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr22	23487533	rs1476441	C	T	5500.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:2,208:0.99:210
chr22	23497998	rs5759607	G	A	1156.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr22	23498327	.	T	TCTGAGAAAA	1297.73	.	AC=2;AF=1.00;AN=2;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.62;QD=44.75;SOR=2.910;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr22	23498329	.	CA	TG	265	.	AC=2;AF=1.00;AN=2;BRF=0.55;FR=1.0000;HP=2;HapScore=4;MGOF=1;MMLQ=27;MQ=61.13;NF=2;NR=5;PP=265;QD=45.4954106946;SC=TTTTGTCCTCCAAGACCCACT;SbPval=0.48;Source=Platypus;TC=9;TCF=2;TCR=7;TR=7;WE=23498342;WS=23498319;set=Platypus	GT:AD:AF:DP	1/1:2,7:0.78:9
chr22	23498330	rs56055341	A	ACTG	1221.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.77;QD=45.25;SOR=2.387;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr22	23498332	rs56254210	G	GAAA	1222.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.86;QD=50.95;SOR=2.494;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr22	23498333	.	A	AAAACCACTGAGAAAAC	2327	.	AC=2;AF=1.00;AN=2;BRF=0.55;FR=1.0000;HP=3;HapScore=4;MGOF=1;MMLQ=27;MQ=60.67;NF=0;NR=5;PP=2327;QD=485.4;SC=GTCCTCCAAGACCCACTGAGA;SbPval=1.0;Source=Platypus;TC=6;TCF=0;TCR=6;TR=5;WE=23498342;WS=23498319;set=Platypus	GT:AD:AF:DP	1/1:1,5:0.83:6
chr22	23498334	.	C	A	135	.	AC=2;AF=1.00;AN=2;BRF=0.55;FR=1.0000;HP=2;HapScore=4;MGOF=1;MMLQ=27;MQ=61.13;NF=2;NR=6;PP=135;QD=21.2214015684;SC=TCCTCCAAGACCCACTGAGAA;SbPval=0.55;Source=Platypus;TC=9;TCF=2;TCR=7;TR=8;WE=23498342;WS=23498319;set=Platypus	GT:AD:AF:DP	1/1:1,8:0.89:9
chr22	23498334	rs56396215	C	CA	1071.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.93;QD=48.72;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr22	23503121	rs5759611	G	A	5568.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:1,210:1.00:211
chr22	23503382	rs5759616	C	T	1080.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr22	23523073	.	G	GC	547.73	.	AC=2;AF=1.00;AN=2;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr22	23523082	rs199698427	G	GC	659.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr22	23523630	rs5751602	C	A	7401.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr22	23540414	rs2071431	T	G	1110.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr22	23540609	rs4822371	A	G	2384.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr22	23541488	rs2071436	C	T	5451.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:2,201:0.99:203
chr22	23627369	rs140504	A	G	763.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr22	23627441	rs131675	T	C	351.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr22	23632665	rs131677	C	A	2715.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr22	23656148	rs66569843	T	G	2496.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr22	23657477	rs180810	A	G	893.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:1,18:0.95:19
chr22	23657495	rs180811	C	G	1209.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr22	23657735	rs180812	G	A	594.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr22	23735649	rs8135826	C	A	2006.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr22	23961597	rs199836567	A	G	8609.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:2,323:0.99:325
chr22	23961742	rs5844566	G	GGCACCCATAA	2939.73	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr22	23962744	rs72559613	T	TTTC	10740.73	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr22	24106674	rs140181	G	A	7779.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr22	24108288	rs140182	C	G	3571.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr22	24108412	rs80027270	G	A	1083.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.09;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr22	24121378	rs738792	C	T	4777.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr22	24122499	rs9612427	G	A	827.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr22	24125565	rs2877173	G	A	3794.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr22	24129240	rs11090285	C	T	2662.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr22	24129553	rs55705149	GGC	G	1973.73	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.27;QD=37.24;SOR=4.615;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr22	24135968	rs11413092	C	CT	290.37	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.527;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=4.330;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=0.000;QD=8.07;ReadPosRankSum=0.485;SOR=0.191;set=HC	GT:AD:AF:DP	0/1:11,25:0.69:36
chr22	24143502	rs738797	C	G	8118.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr22	24145395	rs5760030	A	G	3080.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr22	24145675	rs5751738	G	C	1231.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr22	24176959	rs35305666	CA	C	5077.73	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr22	24179724	rs2070462	G	C	812.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr22	24199260	rs60895711	TG	T	130.06	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.299;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.50;MQRankSum=0.000;QD=10.84;ReadPosRankSum=1.741;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:1,11:0.92:12
chr22	24204158	rs2275979	A	G	601.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr22	24284825	rs6003982	C	G	3465.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:4,128:0.97:132
chr22	24285057	rs201546417	TAAAACAAAAACA	T	2213.73	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr22	24302486	rs185856170	A	G	208.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.58;QD=23.20;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr22	24325006	rs200925305	G	A	175.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.93;MQRankSum=-3.731;QD=7.99;ReadPosRankSum=0.000;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:16,6:0.27:22
chr22	24325024	rs201723657	C	T	175.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.93;MQRankSum=-3.731;QD=7.99;ReadPosRankSum=0.000;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:16,6:0.27:22
chr22	24325047	rs149686121	C	G	175.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.93;MQRankSum=-3.731;QD=7.99;ReadPosRankSum=-2.292;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:16,6:0.27:22
chr22	24340650	rs72348255	G	GT,GTT	710.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.784;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=16.92;ReadPosRankSum=1.180;SOR=0.527;set=HC	GT:AD:AF:DP	1/2:4,27,11:0.64,0.26:42
chr22	24340851	rs7291160	G	C	3736.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:1,132:0.99:133
chr22	24340938	rs140290	A	G	2309.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr22	24452885	rs2070467	A	G	1514.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr22	24459438	rs762273	T	C	5925.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr22	24472270	rs2283807	A	G	2295.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr22	24480503	rs4820581	G	A	4115.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr22	24492061	rs2236622	T	C	2205.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr22	24628928	rs762276	G	A	943.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr22	24717850	rs204710	A	G	6423.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr22	24730587	rs5760351	C	T	1279.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr22	24761467	rs204718	G	A	5460.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr22	24808435	rs743363	G	A	1010.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr22	24891355	rs2070475	A	T	4400.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr22	24936970	rs9704	A	G	12421.77	.	AC=2;AF=1.00;AN=2;DB;DP=475;set=Intersection	GT:AD:AF:DP	1/1:0,471:1.00:471
chr22	24938908	rs8139822	A	G	1786.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr22	24944053	rs4822506	C	T	2691.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr22	24944782	rs1003580	A	G	2470.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr22	24953479	rs11427005	C	CT	280.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.498;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=2.049;MLEAC=1;MLEAF=0.500;MQ=60.34;MQRankSum=0.000;QD=9.36;ReadPosRankSum=-0.846;SOR=0.340;set=HC	GT:AD:AF:DP	0/1:11,19:0.63:30
chr22	24953571	rs5760472	A	G	4668.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr22	24964128	rs4597	T	C	4023.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr22	25119284	rs131472	G	A	314.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr22	25119300	rs140345	T	C	193.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr22	25145453	rs1892723	C	T	3196.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr22	25151880	rs35204283	T	TA	1621.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.267;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=21.34;ReadPosRankSum=-0.869;SOR=0.395;set=HC	GT:AD:AF:DP	1/1:2,74:0.97:76
chr22	25246112	rs139670	G	A	1208.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr22	25250787	rs139680	A	G	803.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr22	25252192	rs139681	A	G	3428.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:1,118:0.99:119
chr22	25297755	rs139738	G	A	4205.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr22	25297965	rs139739	T	C	685.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.17;SOR=2.899;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr22	25603008	rs13055430	C	T	6444.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr22	25714110	rs2064141	T	C	18446.77	.	AC=2;AF=1.00;AN=2;DB;DP=409;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.69;QD=45.10;SOR=0.856;set=HC	GT:AD:AF:DP	1/1:0,409:1.00:409
chr22	25714113	rs2330574	A	G	18584.77	.	AC=2;AF=1.00;AN=2;DB;DP=421;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.70;QD=44.25;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,420:1.00:420
chr22	25716068	rs133162	C	G	2402.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.94;QD=26.70;SOR=1.105;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr22	26110305	rs28763891	G	A	742.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr22	26166011	rs133903	C	A	498.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr22	26193982	rs738642	C	G	3980.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr22	26219412	rs5752226	T	C	1483.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr22	26222247	rs8143030	T	C	833.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr22	26224704	rs41281575	T	C	6796.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:3,259:0.99:262
chr22	26228757	rs35045598	TA	T	2104.73	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr22	26228797	rs3859879	A	G	4345.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr22	26241928	rs2072011	G	A	350.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr22	26241994	rs2072012	T	C	1048.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr22	26270190	rs67075414	A	ACC	1445.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr22	26270206	rs6004807	C	G	1578.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr22	26272005	rs369957764	GTGTGTGTA	G	359.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.828;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=64.13;MQRankSum=0.000;QD=16.35;ReadPosRankSum=-0.239;SOR=2.737;set=HC	GT:AD:AF:DP	0/1:4,18:0.82:22
chr22	26273789	rs5761293	T	C	1638.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr22	26273850	rs695428	G	C	3705.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr22	26273889	rs5752240	C	T	4213.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:2,162:0.99:164
chr22	26298754	rs2072016	G	A	1773.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr22	26298874	rs2072017	T	C	463.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr22	26317155	rs739284	A	G	1963.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr22	26342056	rs4820662	C	T	666.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.99;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr22	26343805	rs2072007	A	G	2156.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr22	26346311	rs10600754	AT	A	596.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.885;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=16.13;ReadPosRankSum=1.102;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:2,35:0.95:37
chr22	26346484	.	A	ATGTGTGTGTATGTGTGTG	493.73	.	AC=2;AF=1.00;AN=2;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=65.19;QD=35.27;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr22	26388337	rs916425	C	T	6463.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:4,250:0.98:254
chr22	26710037	rs144139924	TAC	T	72.27	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:3,4:0.57:7
chr22	26769234	rs1076660	T	G	802.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr22	26769464	rs5844691	G	GA	350.75	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.506;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.34;MQRankSum=0.487;QD=16.70;ReadPosRankSum=-0.180;SOR=0.368;set=HC	GT:AD:AF:DP	1/1:2,19:0.90:21
chr22	26769539	rs1076661	A	C	239.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr22	26777795	rs482902	A	T	1140.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr22	26830478	rs3788398	A	G	3935.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:3,146:0.98:149
chr22	26838292	rs13055485	G	A	2768.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:2,100:0.98:102
chr22	26853905	rs1894704	C	A	2264.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr22	26853980	rs1894705	T	C	824.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr22	26854441	rs1894706	G	A	6189.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr22	26854682	rs4822722	T	C	735.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr22	26859942	rs5752330	C	T	2931.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr22	26861545	rs3213583	A	G	1704.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr22	26862153	rs739289	C	A	5144.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr22	26862212	rs713998	T	C	3204.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr22	26864658	rs739290	A	G	6444.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr22	26877539	rs739291	C	T	916.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr22	26879823	rs968425	C	A	236.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr22	26879946	rs66831137	GGAGGCGGCGCCCCGGGGGAGA	G	483.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr22	26882142	rs5761561	G	A	1145.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr22	26884039	rs4820682	G	A	4290.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr22	26886953	rs34878449	GT	G	2815.73	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:5,140:0.97:145
chr22	26887099	rs4820683	T	A	6244.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;MQ=60.23;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr22	26887829	rs1045523	A	G	1140.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr22	26894985	rs2187956	C	T	4606.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr22	26895061	rs2157586	G	A	3980.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr22	26895337	rs1008530	G	A	9377.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:0,344:1.00:344
chr22	26899474	rs134136	T	C	960.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr22	26932150	rs3752523	G	A	5452.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:2,199:0.99:201
chr22	26936897	rs12169509	G	A	5131.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:2,194:0.99:196
chr22	26937321	rs17851532	G	A	7920.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.52;SOR=1.127;set=HC	GT:AD:AF:DP	1/1:0,174:1.00:174
chr22	26937327	rs4822735	C	G	7979.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.09;SOR=1.154;set=HC	GT:AD:AF:DP	1/1:0,181:1.00:181
chr22	26951317	rs28402932	A	G	442.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr22	27004089	rs5761626	A	C	3651.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr22	27021425	rs4276	A	G	3180.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:2,124:0.98:126
chr22	27021457	rs5761637	T	C	4870.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr22	28146769	rs2188157	G	GA	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.549;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.67;ReadPosRankSum=-0.079;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:8,5:0.38:13
chr22	28194933	.	T	TTGC	3767.73	.	AC=1;AF=0.500;AN=2;DP=229;set=Intersection	GT:AD:AF:DP	0/1:18,152:0.89:170
chr22	28208729	rs11704274	A	G	1201.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr22	28208794	rs11704207	C	T	1018.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr22	28316591	rs75321888	T	TG	1580.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr22	29130300	rs1033667	C	T	1172.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr22	29130813	rs201340887	G	GA	259.90	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.613;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=1.999;MLEAC=1;MLEAF=0.500;MQ=60.62;MQRankSum=0.816;QD=10.83;ReadPosRankSum=-0.712;SOR=0.352;set=HC	GT:AD:AF:DP	0/1:5,19:0.79:24
chr22	29137944	rs2236142	G	C	1899.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr22	29169898	rs151155842	A	G	279.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr22	29449477	rs2294239	A	G	684.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr22	29456733	rs6005977	T	C	2700.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr22	29469130	rs7292708	A	C	733.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.30;SOR=1.071;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr22	29490497	rs134657	G	A	603.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr22	29495079	rs134665	G	A	586.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr22	29517326	.	G	GT	407.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.641;ClippingRankSum=0.000;DP=176;ExcessHet=3.0103;FS=4.541;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.43;ReadPosRankSum=-0.148;SOR=0.387;set=HC	GT:AD:AF:DP	0/1:124,44:0.26:168
chr22	29517332	.	C	T	3972.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.184;ClippingRankSum=0.000;DP=182;ExcessHet=3.0103;FS=1.475;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.51;ReadPosRankSum=-0.489;SOR=0.364;set=HC	GT:AD:AF:DP	1/1:8,161:0.95:169
chr22	29562853	rs132316	T	C	1231.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr22	29562893	rs132317	G	C	2230.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr22	29656389	rs2231398	G	T	4138.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:2,154:0.99:156
chr22	29688751	rs34395867	CT	C	130.92	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.421;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=8.18;ReadPosRankSum=0.000;SOR=1.127;set=HC	GT:AD:AF:DP	1/1:2,14:0.88:16
chr22	29692488	rs140065	G	T	671.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.52;SOR=1.371;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr22	29692497	rs131190	G	T	556.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.83;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr22	29704125	rs11090564	C	T	1785.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:2,66:0.97:68
chr22	29707639	rs34777709	G	GC	3859.73	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr22	29711251	rs2519485	T	C	2057.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr22	29727886	rs2857465	T	C	2565.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr22	29833639	rs174718	C	G	1512.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr22	29837537	rs3804076	T	C	7907.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:3,294:0.99:297
chr22	29837566	rs71324764	TTCC	T	15659.73	.	AC=2;AF=1.00;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	1/1:2,352:0.99:354
chr22	29879265	rs144426244	C	CA	177.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.053;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=2.432;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=2.056;QD=1.87;ReadPosRankSum=-0.367;SOR=0.392;set=HC	GT:AD:AF:DP	0/1:71,24:0.25:95
chr22	29881884	rs4823040	G	A	2804.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr22	29885567	rs147489453	A	AAAGTCCCCTGAGAAGGCC	19377.73	.	AC=2;AF=1.00;AN=2;DB;DP=537;set=Intersection	GT:AD:AF:DP	1/1:0,416:1.00:416
chr22	29885861	rs165923	T	C	16143.77	.	AC=2;AF=1.00;AN=2;DB;DP=630;set=Intersection	GT:AD:AF:DP	1/1:2,611:1.00:613
chr22	29886413	rs165625	A	G	2551.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr22	29886893	rs1061373	G	T	720.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr22	29904354	rs1049536	G	A	1004.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr22	29922042	rs71324775	CTACTAGG	C	137	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr22	29957321	rs6361	G	A	1859.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr22	29957911	rs469295	T	C	1492.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr22	29957944	rs468986	C	T	645.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:2,24:0.92:26
chr22	29960335	rs456300	A	G	9423.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	1/1:0,353:1.00:353
chr22	29966083	rs456285	C	T	3121.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr22	30034994	rs5763378	G	T	2138.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:1,71:0.99:72
chr22	30051705	.	CT	C	447.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.803;ClippingRankSum=0.000;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.130;QD=5.39;ReadPosRankSum=0.007;SOR=0.800;set=HC	GT:AD:AF:DP	0/1:35,48:0.58:83
chr22	30060987	.	T	TAA	4893.73	.	AC=2;AF=1.00;AN=2;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr22	30069207	rs13055076	C	T	2712.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr22	30077361	rs140086	G	A	184.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr22	30138548	rs140120	T	C	3912.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:1,142:0.99:143
chr22	30138689	rs140121	C	T	396.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr22	30184950	rs7954	A	G	1913.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:1,73:0.99:74
chr22	30200893	rs2074706	G	C	3067.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr22	30200936	rs36572	T	C	1859.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr22	30202774	rs737945	G	C	3481.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr22	30212194	rs713656	C	G	654.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr22	30217827	rs2057882	A	T	410.06	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.447;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=2.521;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=16.40;ReadPosRankSum=-0.503;SOR=0.929;set=HC	GT:AD:AF:DP	1/1:3,22:0.88:25
chr22	30217992	rs5763521	C	T	402.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.81;QD=22.38;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr22	30221826	rs9306465	T	A	890.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:2,35:0.95:37
chr22	30223746	rs147155722	G	GAC,GACAC	834.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=71;set=Intersection	GT:AF:DP	1/2:0.36,0.61:28
chr22	30223796	rs148580571	T	TCTC	1118.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr22	30229399	rs3958025	C	G	977.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr22	30234192	.	T	TGCC,TGCCGCC	3550.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=87;set=Intersection	GT:AF:DP	1/2:0.15,0.85:80
chr22	30366924	rs34749290	C	CT	499.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.353;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=16.66;ReadPosRankSum=0.623;SOR=1.236;set=HC	GT:AD:AF:DP	1/1:3,27:0.90:30
chr22	30374281	rs9306468	T	C	209.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr22	30374621	rs997913	T	A	709.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr22	30384572	rs5763671	G	A	1920.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr22	30394623	rs5763689	T	C	341.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr22	30500234	rs17648231	A	G	531.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr22	30822920	rs5844906	T	TG	6025.73	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr22	30863234	.	A	ACATC	501.73	.	AC=2;AF=1.00;AN=2;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.56;QD=41.81;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr22	30885727	rs34092815	CT	C	1731.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr22	30885980	rs17670808	G	A	1987.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:2,73:0.97:75
chr22	30887446	rs9608942	T	C	3041.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:2,100:0.98:102
chr22	30888494	rs17738527	C	T	2650.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr22	30888527	rs17738540	C	T	3228.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr22	30889967	rs8141671	G	C	916.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr22	30891250	rs9606738	T	C	2706.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr22	30891294	rs9606739	G	C	4472.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr22	30891859	rs9608944	A	G	2897.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:2,110:0.98:112
chr22	30901592	rs9608956	T	C	2703.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr22	30921249	rs7289828	G	T	3991.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr22	30921371	rs6518698	T	C	12290.77	.	AC=2;AF=1.00;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	1/1:5,456:0.99:461
chr22	30927975	rs5749118	C	T	7422.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr22	30930080	rs5753187	T	A	2782.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr22	30930158	rs2899151	T	C	803.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr22	30934816	rs5753190	T	C	9169.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	1/1:0,348:1.00:348
chr22	30976521	rs111340628	G	A	5627.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr22	30985011	.	C	CTTGGACCACA	670.73	.	AC=2;AF=1.00;AN=2;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr22	30987861	rs737953	G	C	12157.77	.	AC=2;AF=1.00;AN=2;DB;DP=451;set=Intersection	GT:AD:AF:DP	1/1:1,443:1.00:444
chr22	30988382	rs13053923	G	A	1341.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr22	31006860	rs9606756	A	G	2615.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr22	31011557	rs2267163	T	C	11277.77	.	AC=2;AF=1.00;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	1/1:0,399:1.00:399
chr22	31011610	rs1801198	G	C	11200.77	.	AC=2;AF=1.00;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	1/1:0,396:1.00:396
chr22	31011882	rs4820021	A	T	1440.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr22	31013419	rs9621049	C	T	5612.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr22	31018777	rs2301956	G	A	1008.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr22	31022272	rs2072194	G	A	300.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr22	31022301	rs12168392	G	A	811.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr22	31022590	rs12169610	C	T	940.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr22	31032920	rs5997714	A	G	19862.77	.	AC=2;AF=1.00;AN=2;DB;DP=735;MQ=59.99;set=Intersection	GT:AD:AF:DP	1/1:0,731:1.00:731
chr22	31060029	rs1005887	G	C	1996.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr22	31089958	rs11383654	G	GA	405.50	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.596;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.89;ReadPosRankSum=-1.523;SOR=1.255;set=HC	GT:AD:AF:DP	0/1:10,31:0.76:41
chr22	31266546	rs2301816	T	C	6629.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr22	31266777	rs4820909	T	C	575.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr22	31301734	rs10625967	A	AGG	3839.73	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr22	31342594	rs5753403	C	T	890.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr22	31494568	rs59174577	A	ACC	2045.73	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:2,54:0.96:56
chr22	31497054	rs5753459	A	C	2292.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr22	31500536	rs10304	G	A	1910.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:1,64:0.98:65
chr22	31501833	rs2283875	C	T	1238.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr22	31503569	.	G	GCCCCGCCCCCGC	922.73	.	AC=2;AF=1.00;AN=2;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr22	31521404	rs2240432	G	A	10692.77	.	AC=2;AF=1.00;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	1/1:5,395:0.99:400
chr22	31521850	rs2240431	A	C	14954.77	.	AC=2;AF=1.00;AN=2;DB;DP=550;set=Intersection	GT:AD:AF:DP	1/1:0,540:1.00:540
chr22	31528932	rs2413027	A	T	1220.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr22	31529463	rs35342535	C	A	5508.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr22	31532568	rs757872	G	C	1857.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr22	31532960	rs2232183	C	T	1799.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr22	31533967	rs2074739	G	A	1932.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr22	31535995	rs2074734	C	G	3381.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr22	31536133	rs2232176	A	C	4566.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr22	31583007	rs5997902	A	G	565.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr22	31600460	rs2413035	T	C	3581.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;MQ=60.07;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr22	31602139	rs3208937	A	G	788.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr22	31602187	rs13158	C	T	270.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.90;QD=27.08;SOR=4.804;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr22	31658281	rs2073857	A	G	3990.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr22	31663842	rs2228619	C	G	3850.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr22	31664395	rs144757660	AAAGGCAAACAGGGCACGGAC	A	568.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr22	31669267	rs2040532	A	G	708.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr22	31672676	rs59315359	G	A	184.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr22	31672752	rs5997933	A	C	732.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr22	31679110	rs2040533	G	C	2276.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr22	31685458	rs5753543	G	A	5797.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr22	31687142	rs5753544	G	C	7343.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr22	31687313	rs4820044	A	G	4906.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr22	31687455	.	ACC	A	643.73	.	AC=2;AF=1.00;AN=2;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr22	31724972	rs131207	CA	C	2859.73	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr22	31737436	rs62236170	G	A	1376.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr22	31795866	rs4820047	T	C	1808.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr22	31806802	.	CA	C	25	.	AC=1;AF=0.500;AN=2;BRF=0.31;FR=0.5011;HP=12;HapScore=2;MGOF=25;MMLQ=24;MQ=60.0;NF=3;NR=0;PP=25;QD=10.3333333333;SC=ACTCCATCTCCAAAAAAAAAA;SbPval=1.0;Source=Platypus;TC=8;TCF=5;TCR=3;TR=3;WE=31806810;WS=31806792;set=Platypus	GT:AD:AF:DP	0/1:5,3:0.38:8
chr22	31839151	rs16989617	T	C	1411.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr22	31854434	rs11293411	AT	A	4531.73	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr22	31904170	rs2413054	A	G	1081.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr22	31946282	rs16989753	T	C	6033.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:2,232:0.99:234
chr22	31957167	rs16989278	A	G	1489.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr22	31969249	rs142095380	T	TC	2313.73	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr22	31971071	.	CGTGTGTGTGT	C	73.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DP=8;ExcessHet=3.0103;FS=3.332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.22;ReadPosRankSum=1.150;SOR=0.880;set=HC	GT:AD:AF:DP	0/1:5,3:0.38:8
chr22	31971172	rs10657905	A	ATCT	4282.73	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr22	31976299	rs55894054	T	C	7690.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr22	31983287	.	A	ATTTGTTTTTTT	6539.73	.	AC=2;AF=1.00;AN=2;DP=194;set=Intersection	GT:AD:AF:DP	1/1:1,161:0.99:162
chr22	31985312	rs138844666	A	ATT	620.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr22	31998808	rs62237819	A	C	876.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr22	31999846	rs16989312	G	C	1487.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr22	32002294	rs5753723	T	C	2129.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr22	32003798	rs8139560	C	T	1246.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr22	32007153	rs9621295	G	A	2357.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr22	32011225	rs12171042	T	C	5509.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr22	32012658	rs45594940	A	G	1844.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr22	32015406	rs14034	T	C	664.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr22	32015450	rs9956	T	G	1392.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr22	32017296	rs61249659	A	G	3136.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:1,101:0.99:102
chr22	32021596	rs62237838	C	T	792.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr22	32046528	rs58926861	G	A	535.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.51;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr22	32058269	rs16989379	G	A	7260.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:2,282:0.99:284
chr22	32081436	rs375258831	CAA	C	1620.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.460;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=3.824;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=0.535;QD=18.63;ReadPosRankSum=-0.291;SOR=1.591;set=HC	GT:AD:AF:DP	0/1:18,69:0.79:87
chr22	32081681	rs8142355	C	T	6173.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr22	32100550	rs5998098	C	T	817.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr22	32100857	rs5998099	C	T	1871.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:1,68:0.99:69
chr22	32108475	rs16989427	C	T	5031.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:1,181:0.99:182
chr22	32108824	rs131224	T	A	4395.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:1,154:0.99:155
chr22	32110163	rs140078	G	A	4683.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr22	32110943	rs140079	G	A	8208.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:2,302:0.99:304
chr22	32112461	rs140081	T	C	7798.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr22	32179850	rs138286	G	C	3348.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr22	32198862	rs5998133	C	T	4123.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:3,151:0.98:154
chr22	32205632	rs5998135	A	C	3588.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr22	32211371	rs10712869	CT	C	194.92	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.299;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.29;ReadPosRankSum=-0.423;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:10,21:0.68:31
chr22	32211412	rs5749334	A	C	641.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr22	32211450	rs11089530	G	A	421.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr22	32222476	rs17761491	C	G	8110.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:2,309:0.99:311
chr22	32229977	rs55645350	G	A	2818.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr22	32266546	rs5994441	A	T	1860.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr22	32275353	rs5994443	T	C	820.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr22	32435409	rs130262	G	C	728.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr22	32463875	rs135110	G	A	1336.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr22	32478972	rs131880	A	AG	5922.73	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr22	32482127	.	C	CA	48.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.603;ClippingRankSum=0.000;DP=139;ExcessHet=3.0103;FS=6.005;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=0.000;QD=0.39;ReadPosRankSum=-2.227;SOR=1.569;set=HC	GT:AD:AF:DP	0/1:99,25:0.20:124
chr22	32495092	.	A	AATATATATAT	121.94	.	AC=2;AF=1.00;AN=2;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=60.97;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr22	32545849	rs58570639	C	CA	2827.73	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr22	32579550	rs136428	T	C	8225.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.22;SOR=0.737;set=HC	GT:AD:AF:DP	1/1:0,186:1.00:186
chr22	32579559	rs136429	A	G	8357.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.76;SOR=0.746;set=HC	GT:AD:AF:DP	1/1:0,191:1.00:191
chr22	32579676	rs136430	A	G	1917.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;MQ=59.97;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr22	32579742	rs1297809	C	T	775.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.382;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=3.531;MLEAC=2;MLEAF=1.000;MQ=59.85;MQRankSum=-0.278;QD=24.24;ReadPosRankSum=-1.030;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:2,30:0.94:32
chr22	32579751	rs136431	C	G	1270.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.84;QD=42.36;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr22	32586632	rs136466	C	T	712.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr22	32586854	rs136467	C	T	2904.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr22	32586875	rs136468	G	A	3816.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.35;QD=44.90;SOR=1.302;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr22	32586878	rs136469	A	G	3816.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.85;QD=45.44;SOR=1.275;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr22	32586926	rs136470	T	C	2469.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.26;QD=32.93;SOR=1.164;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr22	32587023	rs55974778	C	G	13468.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.36;QD=44.90;SOR=1.555;set=HC	GT:AD:AF:DP	1/1:0,300:1.00:300
chr22	32587027	rs136472	G	C	13605.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.73;QD=44.17;SOR=1.504;set=HC	GT:AD:AF:DP	1/1:0,308:1.00:308
chr22	32587478	rs136473	T	C	1290.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr22	32589023	rs136478	C	T	9738.77	.	AC=2;AF=1.00;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	1/1:0,352:1.00:352
chr22	32589034	rs136479	T	C	10064.77	.	AC=2;AF=1.00;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	1/1:0,351:1.00:351
chr22	32589090	rs8135276	C	T	10819.77	.	AC=2;AF=1.00;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	1/1:7,400:0.98:407
chr22	32590449	rs108211	G	A	1457.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr22	32590522	rs136484	T	C	462.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr22	32617062	rs5998317	G	A	4505.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:2,171:0.99:173
chr22	32621619	rs2294208	C	T	6694.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr22	32626908	rs2068209	G	A	1240.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr22	32633505	rs5998328	G	T	354.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr22	32756652	rs201161881	A	G	575.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.564;ClippingRankSum=0.000;DB;DP=287;ExcessHet=3.0103;FS=12.824;MLEAC=1;MLEAF=0.500;MQ=56.88;MQRankSum=-14.750;QD=2.01;ReadPosRankSum=0.016;SOR=0.611;set=HC	GT:AD:AF:DP	0/1:229,57:0.20:286
chr22	32756684	rs61729165	C	A	1104.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.029;ClippingRankSum=0.000;DB;DP=288;ExcessHet=3.0103;FS=1.601;MLEAC=1;MLEAF=0.500;MQ=56.57;MQRankSum=-16.403;QD=3.85;ReadPosRankSum=2.729;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:208,79:0.28:287
chr22	32756703	rs73166367	C	T	1125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.937;ClippingRankSum=0.000;DB;DP=301;ExcessHet=3.0103;FS=0.990;MLEAC=1;MLEAF=0.500;MQ=56.77;MQRankSum=-16.812;QD=3.75;ReadPosRankSum=3.444;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:217,83:0.28:300
chr22	32756744	rs2076035	A	G	5151.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:69,216:0.76:285
chr22	32783904	rs12530	T	C	1381.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr22	32791003	rs2072818	A	C	1434.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:1,48:0.98:49
chr22	32791929	rs3215463	GC	G	519.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr22	32795641	rs5749426	C	T	3352.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:2,127:0.98:129
chr22	32795751	rs9609527	A	G	2465.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr22	32796247	rs737779	G	C	2791.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr22	32804313	rs5754073	G	A	1718.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:2,63:0.97:65
chr22	32804656	rs2076043	G	A	4477.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr22	32811952	rs5998478	A	G	1788.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr22	32813176	rs3885439	CTT	C	974.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.476;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=4.197;MLEAC=1;MLEAF=0.500;MQ=60.34;MQRankSum=0.545;QD=23.21;ReadPosRankSum=0.733;SOR=2.737;set=HC	GT:AD:AF:DP	1/1:2,40:0.95:42
chr22	32841760	rs17691853	C	T	2296.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr22	32843145	rs45606632	G	A	6252.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr22	32843436	rs4821063	C	T	448.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr22	32849192	rs7290725	C	T	160.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr22	32871365	rs9621461	G	A	2335.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr22	32875190	rs11107	G	A	8803.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,325:1.00:325
chr22	32875388	rs5845002	CT	C	116.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.319;ClippingRankSum=-0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.98;ReadPosRankSum=0.319;SOR=2.093;set=HC	GT:AD:AF:DP	0/1:2,11:0.85:13
chr22	32886998	rs738982	T	C	520.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr22	32887150	rs9726	C	T	3960.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.41;SOR=0.895;set=HC	GT:AD:AF:DP	1/1:0,150:1.00:150
chr22	32891368	rs10648473	T	TTC	1251.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.02;QD=33.83;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr22	32934274	rs2239766	T	G	1263.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr22	32937740	rs135479	T	C	6873.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:4,267:0.99:271
chr22	33229685	rs242077	T	C	1901.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr22	33229830	rs242076	A	G	4386.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr22	33253280	rs9862	T	C	2612.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:2,99:0.98:101
chr22	33832735	rs713740	A	G	160.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr22	34000230	rs695504	T	C	735.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr22	34022374	rs68171942	AG	A	2434.73	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr22	34157526	rs16992986	G	A	1002.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr22	35463162	rs361863	A	G	2195.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr22	35463179	rs361668	T	C	2550.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr22	35463249	rs362090	C	T	2915.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr22	35726280	rs145024189	A	G	2556.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:1,94:0.99:95
chr22	35777185	rs2071747	G	C	7599.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr22	35786003	rs143430077	GGACTTGGCTGTCT	G	233.79	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr22	35802661	rs2307340	C	G	2754.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr22	35806616	rs4645776	T	C	1567.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr22	35810052	rs80433	T	C	1307.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr22	35820254	rs4645824	G	A	3428.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr22	35947585	rs41279993	C	A	6893.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr22	36006923	rs35171458	G	GC	2789.73	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr22	36114047	rs4821438	C	T	4289.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.47;SOR=1.134;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chr22	36114054	rs2899256	C	T	3973.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.65;SOR=1.141;set=HC	GT:AD:AF:DP	1/1:0,89:1.00:89
chr22	36122517	rs17723764	T	C	10286.77	.	AC=2;AF=1.00;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	1/1:2,375:0.99:377
chr22	36123083	rs2076672	C	T	4197.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr22	36357789	rs78630440	C	T	4282.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr22	36424450	rs9607299	A	C	763.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr22	36537725	rs61731692	G	A	5835.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:1,212:1.00:213
chr22	36541725	rs1807672	G	T	539.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr22	36545137	rs132642	A	T	2470.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr22	36545780	rs7290574	C	T	1299.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr22	36545826	rs132644	T	C	2497.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr22	36556823	rs132653	G	T	5720.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr22	36587202	rs6000172	G	A	2554.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr22	36587223	rs6000173	G	T	2815.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr22	36587279	rs6000174	A	G	3093.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr22	36587486	rs2227167	A	G	8920.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr22	36587511	rs2227168	C	T	8754.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:1,320:1.00:321
chr22	36587845	rs3075364	A	ACT	24466.73	.	AC=2;AF=1.00;AN=2;DB;DP=566;set=Intersection	GT:AD:AF:DP	1/1:0,555:1.00:555
chr22	36587952	rs2227169	C	T	5581.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;MQ=60.05;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr22	36591380	rs2007468	A	G	4516.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr22	36597552	rs9610443	G	A	116.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.842;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=23.35;ReadPosRankSum=-0.524;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:1,4:0.80:5
chr22	36597556	rs132725	G	A	116.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.150;ClippingRankSum=-0.000;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=29.19;ReadPosRankSum=-0.319;SOR=0.916;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr22	36597564	rs9610444	G	A	94.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.150;ClippingRankSum=-0.000;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=23.69;ReadPosRankSum=-0.319;SOR=0.916;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr22	36597744	rs9610445	A	C	2992.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:1,109:0.99:110
chr22	36597877	rs132734	G	A	3161.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:2,112:0.98:114
chr22	36598049	rs80587	C	G	6374.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.65;QD=43.96;SOR=1.210;set=HC	GT:AD:AF:DP	1/1:0,145:1.00:145
chr22	36598058	rs132736	T	C	6192.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.64;QD=44.55;SOR=1.195;set=HC	GT:AD:AF:DP	1/1:0,139:1.00:139
chr22	36598081	rs6000181	A	T	2773.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:2,105:0.98:107
chr22	36598187	rs132737	G	C	730.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr22	36623361	.	CAAA	C	351.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.362;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.75;ReadPosRankSum=1.200;SOR=2.200;set=HC	GT:AD:AF:DP	0/1:5,16:0.76:21
chr22	36623731	rs132760	T	C	12523.77	.	AC=2;AF=1.00;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	1/1:0,439:1.00:439
chr22	36633564	rs916263	T	C	1534.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr22	36633836	rs916264	A	C	930.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr22	36635445	rs1974458	A	G	1717.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr22	36635756	rs5756111	G	A	1184.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr22	36657596	rs713929	A	G	8888.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:2,343:0.99:345
chr22	36657628	rs136163	T	G	10691.77	.	AC=2;AF=1.00;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	1/1:0,411:1.00:411
chr22	36657789	rs136164	T	C	4440.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr22	36661149	rs136169	A	G	1803.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.09;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr22	36661152	rs28480494	G	A	1803.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.99;SOR=1.501;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr22	36661330	rs2239785	G	A	5433.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr22	36661536	rs136174	C	A	10218.77	.	AC=2;AF=1.00;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	1/1:0,369:1.00:369
chr22	36661566	rs136175	G	A	8927.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:0,329:1.00:329
chr22	36661646	rs136176	G	A	6914.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:2,253:0.99:255
chr22	36661842	rs136177	G	A	5828.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:2,206:0.99:208
chr22	36690113	rs4821478	G	A	3822.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr22	36691607	rs710181	A	C	2124.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr22	36695173	rs2187776	C	T	1571.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr22	36695247	rs4821480	G	T	319.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr22	36705529	rs1557529	A	G	3219.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr22	36708084	rs2413396	C	T	1956.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr22	36708338	rs2157257	A	G	2417.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:2,86:0.98:88
chr22	36708400	rs34645860	C	CA	1041.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr22	36710047	rs5756141	T	C	1661.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.91;SOR=2.774;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr22	36710056	rs5756142	A	G	1797.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.81;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr22	36710183	rs3752462	T	C	7388.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr22	36712387	rs5756150	A	G	727.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=65.19;QD=31.64;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr22	36712400	rs67607973	GA	G	256	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.512;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=2.399;MLEAC=1;MLEAF=0.500;MQ=65.03;MQRankSum=3.858;QD=9.14;ReadPosRankSum=1.777;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:7,21:0.75:28
chr22	36712414	rs5756151	C	G	1110.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=64.48;QD=32.67;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr22	36712472	rs5756152	A	G	2001.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr22	36716202	rs3833922	C	CT	7759.73	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr22	36716209	rs3752463	G	A	9127.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr22	36722534	rs8136336	G	A	2845.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr22	36722838	rs11316214	CG	C	3488.73	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr22	36723697	rs5756157	T	G	1017.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr22	36744886	rs56147525	GC	G	8996.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr22	36744888	rs56084634	C	G	9088.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=204;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.67;SOR=1.835;set=HC	GT:AD:AF:DP	1/1:0,199:1.00:199
chr22	36744888	.	CCC	GCT	2947	.	AC=2;AF=1.00;AN=2;BRF=0.47;FR=1.0000;HP=11;HapScore=1;MGOF=5;MMLQ=24;MQ=60.0;NF=89;NR=43;PP=2947;QD=20;SC=GAAGACCCGCCCCCCCCCCCC;SbPval=0.38;Source=Platypus;TC=152;TCF=106;TCR=46;TR=132;WE=36744898;WS=36744876;set=Platypus	GT:AD:AF:DP	1/1:20,132:0.87:152
chr22	36744890	rs55932404	C	T	9089.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.56;SOR=1.817;set=HC	GT:AD:AF:DP	1/1:0,204:1.00:204
chr22	36864063	rs73169632	G	T	2606.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:1,97:0.99:98
chr22	36872750	rs2281082	T	G	2235.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:1,75:0.99:76
chr22	36889556	rs62229991	G	A	1053.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr22	36900271	rs2277841	T	C	8045.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:2,292:0.99:294
chr22	36900806	rs760718	A	G	5079.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr22	36907098	rs728785	T	C	8244.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr22	36912438	rs62230003	A	G	1059.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.39;SOR=5.058;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr22	36912448	rs62230004	A	G	1189.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.03;SOR=5.353;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr22	36912630	rs11558519	A	G	5127.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr22	36913495	rs76174946	T	C	1118.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr22	36919343	rs8140240	A	G	8703.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:0,332:1.00:332
chr22	36919358	rs62230012	A	G	7298.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr22	36919423	rs142575825	ATCACCAC	A	4643.73	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr22	36919441	rs62230013	A	G	4128.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.34;QD=43.92;SOR=2.858;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr22	36919447	rs2076084	C	T	4063.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.36;QD=45.15;SOR=2.885;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr22	36919845	rs74947325	G	C	547.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.65;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr22	36919854	rs12170906	T	G	643.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.24;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr22	36920064	rs55889583	G	A	4012.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr22	36920099	rs12165971	G	C	3409.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr22	36920200	rs12166028	G	A	921.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr22	36920834	rs742146	T	C	5630.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:1,214:1.00:215
chr22	36921614	rs1076643	T	C	3411.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr22	36922052	rs9622410	T	C	3052.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr22	36922205	rs7364189	C	T	1776.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr22	37159819	rs739002	T	C	3126.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr22	37163329	rs1048012	C	T	10461.77	.	AC=2;AF=1.00;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	1/1:0,391:1.00:391
chr22	37257177	rs34567417	G	A	3958.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr22	37266322	rs2075938	A	G	1382.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr22	37267767	rs2072708	A	G	3619.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr22	37268257	rs5756374	C	T	2269.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr22	37268501	rs2072710	A	G	2196.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr22	37268555	rs2072711	A	G	835.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr22	37271882	rs2075939	T	C	13416.77	.	AC=2;AF=1.00;AN=2;DB;DP=529;set=Intersection	GT:AD:AF:DP	1/1:1,511:1.00:512
chr22	37328968	rs4339047	G	C	4121.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:1,163:0.99:164
chr22	37329999	rs1801117	C	T	5395.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:2,208:0.99:210
chr22	37333794	rs131840	A	G	3070.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr22	37453256	rs2235320	G	T	1031.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.90;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr22	37453259	rs710184	A	G	1031.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.99;SOR=3.442;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr22	37453452	rs710185	C	T	4367.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr22	37458437	.	CCT	C	68	.	AC=1;AF=0.500;AN=2;BRF=0.62;FR=0.5000;HP=1;HapScore=2;MGOF=5;MMLQ=25;MQ=58.31;NF=1;NR=1;PP=68;QD=40.5;SC=GACTCAACTGCCTCTCTCTCT;SbPval=0.44;Source=Platypus;TC=4;TCF=3;TCR=1;TR=2;WE=37458446;WS=37458431;set=Platypus	GT:AD:AF:DP	1/0:2,2:0.50:4
chr22	37471290	rs881144	G	A	2752.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr22	37480797	rs2111833	C	T	1498.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr22	37481041	rs2179229	G	C	3810.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr22	37485595	rs2235326	T	C	1160.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.79;SOR=2.252;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr22	37485724	rs2235324	T	C	4253.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr22	37491545	rs2743824	T	C	7511.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.409;ClippingRankSum=0.000;DB;DP=298;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.38;ReadPosRankSum=0.299;SOR=0.287;set=HC	GT:AD:AF:DP	1/1:1,295:1.00:296
chr22	37491669	.	CA	C	86.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.794;ClippingRankSum=0.000;DP=89;ExcessHet=3.0103;FS=8.848;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=-0.516;QD=1.28;ReadPosRankSum=-0.983;SOR=2.095;set=HC	GT:AD:AF:DP	0/1:49,19:0.28:68
chr22	37491839	rs2543509	A	G	1327.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr22	37492201	rs2743825	T	G	838.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr22	37492585	rs5756512	C	T	1289.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.619;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.88;ReadPosRankSum=-1.107;SOR=0.853;set=HC	GT:AD:AF:DP	1/1:2,52:0.96:54
chr22	37499692	rs5756515	A	G	3146.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.71;SOR=2.239;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr22	37499699	rs5756516	C	T	3087.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.09;SOR=2.200;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr22	37524619	rs228942	G	T	5147.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr22	37531257	rs3830742	A	AGT	1253.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.489;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=2.284;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.66;ReadPosRankSum=-0.190;SOR=1.863;set=HC	GT:AD:AF:DP	0/1:12,41:0.77:53
chr22	37531436	rs228953	G	A	6357.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr22	37532506	rs34577916	A	AC,ACC	819.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.29;QD=30.36;SOR=6.666;set=HC	GT:AD:AF:DP	1/2:0,10,17:0.37,0.63:27
chr22	37533786	rs228957	C	G	6306.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.49;SOR=1.210;set=HC	GT:AD:AF:DP	1/1:0,145:1.00:145
chr22	37533795	rs228958	G	C	6136.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.14;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,133:1.00:133
chr22	37535328	rs2281093	C	G	1293.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr22	37539713	rs2235330	T	C	4236.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr22	37578579	rs229519	C	T	9500.77	.	AC=2;AF=1.00;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	1/1:2,359:0.99:361
chr22	37578652	rs17812699	G	A	10254.77	.	AC=2;AF=1.00;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	1/1:2,375:0.99:377
chr22	37578852	rs229521	C	T	5912.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:2,221:0.99:223
chr22	37578960	rs229522	G	A	1404.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr22	37602583	rs11406761	G	GC	7957.73	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr22	37603745	rs4988466	G	A	7174.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:2,272:0.99:274
chr22	37637841	rs2239775	C	A	912.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr22	37678551	rs3213556	A	G	2199.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr22	37678565	rs3213557	G	A	2531.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr22	37678814	rs5995410	C	T	544.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr22	37678837	rs5995411	C	T	223.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr22	37691907	rs2269590	A	G	1115.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr22	37695256	rs2301435	T	C	2858.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr22	37699377	rs2239822	T	C	16805.77	.	AC=2;AF=1.00;AN=2;DB;DP=642;set=Intersection	GT:AD:AF:DP	1/1:1,637:1.00:638
chr22	37700177	rs2284050	T	C	2258.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr22	37707962	rs2269591	C	T	608.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr22	37708004	rs2269593	T	C	1478.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr22	37770066	rs8142615	G	T	9042.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	1/1:5,341:0.99:346
chr22	37770357	rs7292751	A	G	9701.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:4,359:0.99:363
chr22	37771158	rs2071857	G	A	6177.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:1,222:1.00:223
chr22	37888868	rs5756696	G	C	3189.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr22	38086574	rs9610834	C	T	1316.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr22	38119213	rs12628603	G	A	7189.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr22	38119754	rs67890459	TCAA	T	34787.73	.	AC=2;AF=1.00;AN=2;DB;DP=819;set=Intersection	GT:AD:AF:DP	1/1:0,785:1.00:785
chr22	38121152	rs9610841	C	A	15093.77	.	AC=2;AF=1.00;AN=2;DB;DP=560;set=Intersection	GT:AD:AF:DP	1/1:0,548:1.00:548
chr22	38122122	rs5756795	T	C	14128.77	.	AC=2;AF=1.00;AN=2;DB;DP=502;set=Intersection	GT:AD:AF:DP	1/1:0,501:1.00:501
chr22	38122448	rs739137	C	T	2252.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr22	38122462	rs739138	A	G	2034.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr22	38129332	rs7284476	G	A	4224.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:1,161:0.99:162
chr22	38130385	rs13054052	A	C	8221.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr22	38130472	rs8140958	T	C	9457.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:1,356:1.00:357
chr22	38142468	rs5756803	A	G	467.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.62;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr22	38146585	rs4821704	C	T	4075.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr22	38146847	rs6519081	T	C	697.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr22	38155317	rs5756810	C	G	6745.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr22	38161835	rs3833924	T	TG	682.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.36;QD=27.31;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr22	38168508	rs762984	T	C	1730.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr22	38204089	rs710187	C	T	3822.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:2,142:0.99:144
chr22	38211954	rs2285179	G	A	1485.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr22	38212068	rs739269	C	T	923.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr22	38212762	rs13911	A	G	2198.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:1,76:0.99:77
chr22	38220964	rs8138029	T	C	1298.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr22	38243675	rs5750504	A	T	1069.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.455;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.29;ReadPosRankSum=0.026;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:2,46:0.96:48
chr22	38251686	rs2157472	T	C	1984.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr22	38254768	.	G	GT	128.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.458;ClippingRankSum=0.000;DP=126;ExcessHet=3.0103;FS=5.585;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.34;ReadPosRankSum=0.580;SOR=0.260;set=HC	GT:AD:AF:DP	0/1:76,20:0.21:96
chr22	38282897	rs17752670	C	T	2220.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr22	38308048	.	ATG	A	540.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.023;ClippingRankSum=0.000;DP=206;ExcessHet=3.0103;FS=7.858;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.876;QD=3.83;ReadPosRankSum=0.774;SOR=0.222;set=HC	GT:AD:AF:DP	0/1:111,30:0.21:141
chr22	38341134	rs139859	T	C	3374.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr22	38369976	rs139884	A	G	4814.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr22	38453679	rs5845366	A	AG	2241.73	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr22	38455469	rs713729	T	A	2347.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr22	38463535	rs880669	C	T	716.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr22	38463652	rs2076369	T	G	3280.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr22	38463968	rs2076370	A	G	12244.77	.	AC=2;AF=1.00;AN=2;DB;DP=472;set=Intersection	GT:AD:AF:DP	1/1:0,470:1.00:470
chr22	38467784	rs760975	G	C	6017.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:2,218:0.99:220
chr22	38474696	rs2076371	A	G	5566.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr22	38474852	rs1004764	G	A	1049.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr22	38477275	rs75640043	G	A	3427.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr22	38477342	rs4289289	T	A	1492.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr22	38477930	rs2235573	G	A	11662.77	.	AC=2;AF=1.00;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	1/1:2,437:1.00:439
chr22	38478751	.	G	A	4584.77	.	AC=2;AF=1.00;AN=2;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr22	38503847	rs6001006	C	T	8462.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:2,320:0.99:322
chr22	38504372	rs5750540	T	C	1449.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr22	38506509	rs4820313	A	G	3551.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr22	38509439	rs2076114	C	T	733.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr22	38512244	rs11570751	G	A	9235.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	1/1:2,345:0.99:347
chr22	38519335	rs2072867	A	G	1530.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr22	38540837	.	C	CATAAA	895.73	.	AC=1;AF=0.500;AN=2;DP=29;set=Intersection	GT:AD:AF:DP	0/1:4,22:0.85:26
chr22	38541037	rs200204496	A	AC	77.27	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.417;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=65.97;MQRankSum=0.640;QD=5.94;ReadPosRankSum=-1.680;SOR=0.250;set=HC	GT:AD:AF:DP	0/1:2,11:0.85:13
chr22	38541791	.	A	AAC	80	.	AC=1;AF=0.500;AN=2;BRF=0.27;FR=0.5000;HP=2;HapScore=2;MGOF=7;MMLQ=28;MQ=60.0;NF=1;NR=1;PP=80;QD=41.5;SC=CTCCCAAGCAAACACACACAC;SbPval=0.23;Source=Platypus;TC=8;TCF=1;TCR=7;TR=2;WE=38541799;WS=38541781;set=Platypus	GT:AD:AF:DP	1/0:6,2:0.25:8
chr22	38543453	rs2284060	T	C	4485.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.34;SOR=0.774;set=HC	GT:AD:AF:DP	1/1:0,177:1.00:177
chr22	38543545	.	CT	C	362.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.500;ClippingRankSum=0.000;DP=62;ExcessHet=3.0103;FS=10.396;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.80;ReadPosRankSum=2.038;SOR=2.022;set=HC	GT:AD:AF:DP	0/1:8,29:0.78:37
chr22	38609950	rs2235264	G	A	1806.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr22	38611080	rs9610915	C	G	3333.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:2,122:0.98:124
chr22	38689984	rs5757022	T	A	217.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr22	38699050	rs3830720	GAGGC	G	8351.73	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr22	38822698	rs1063134	C	T	572.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr22	38823136	rs196059	T	C	6160.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr22	38875549	rs401933	C	T	2561.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr22	38891984	rs138444	T	TA	108.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.043;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=1.829;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.72;ReadPosRankSum=-0.654;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:9,10:0.53:19
chr22	38917543	.	TAC	T	146.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.773;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.87;ReadPosRankSum=-0.168;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:15,10:0.40:25
chr22	39024961	rs5995602	G	T	1471.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr22	39178701	rs760482	A	G	2266.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.86;SOR=1.053;set=HC	GT:AD:AF:DP	1/1:0,95:1.00:95
chr22	39222652	rs5757299	G	A	4063.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr22	39224248	rs5757300	T	C	6310.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:2,235:0.99:237
chr22	39239172	rs3747176	C	G	440.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr22	39267312	rs1122771	C	T	775.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr22	39355415	rs1977069	A	G	1065.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr22	39355717	rs5750717	G	A	1392.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr22	39357634	rs2294363	A	G	119.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.100;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=6.021;MLEAC=1;MLEAF=0.500;MQ=43.91;MQRankSum=-2.100;QD=14.97;ReadPosRankSum=-0.000;SOR=3.912;set=HC	GT:AD:AF:DP	0/1:2,6:0.75:8
chr22	39382079	rs5995649	C	A	3914.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr22	39419112	rs71326743	CTATT	C	594.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.48;SOR=2.985;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr22	39440149	rs5750728	C	T	8588.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:1,323:1.00:324
chr22	39441096	rs2020390	G	T	4246.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:3,144:0.98:147
chr22	39441203	rs4821862	C	T	3813.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr22	39445380	rs2014881	G	A	1511.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr22	39445554	rs2076101	G	A	4442.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr22	39448711	rs6001402	C	A	3584.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr22	39448750	rs5757451	T	C	2258.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr22	39497509	rs139300	A	G	1040.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr22	39498373	rs139304	TA	T	680.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr22	39629329	rs11704525	C	A	2432.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr22	39629609	rs9622979	G	A	1678.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr22	39636928	rs5757575	A	G	421.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.65;QD=35.15;SOR=2.670;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr22	39636928	.	ACA	GCG	427	.	AC=2;AF=1.00;AN=2;BRF=0.31;FR=1.0000;HP=2;HapScore=3;MGOF=16;MMLQ=24;MQ=62.26;NF=5;NR=16;PP=427;QD=22.8794226125;SC=TCAGATGCGCACACACACACA;SbPval=0.61;Source=Platypus;TC=24;TCF=6;TCR=18;TR=21;WE=39636957;WS=39636918;set=Platypus	GT:AD:AF:DP	1/1:3,21:0.88:24
chr22	39636930	rs5757576	A	G	1189.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.85;QD=45.76;SOR=1.697;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr22	39636944	rs138673005	ACACT	A	381.25	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:1,12:0.92:13
chr22	39639853	rs1800817	G	T	5806.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:1,223:1.00:224
chr22	39709009	rs2014842	G	A	8886.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:3,337:0.99:340
chr22	39711351	rs2076125	A	G	8469.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr22	39712981	rs137623	A	G	3043.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr22	39713105	rs470081	C	T	1526.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr22	39713128	rs2072872	A	G	1010.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr22	39714704	rs1569498	C	T	611.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr22	39714908	rs137625	A	G	2012.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr22	39746168	rs3747177	C	A	3184.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr22	39770597	rs4821888	A	G	6613.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:4,244:0.98:248
chr22	39770780	rs4820377	G	A	637.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr22	39777822	rs149306472	C	CCAA	18594.73	.	AC=2;AF=1.00;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	1/1:0,412:1.00:412
chr22	39795683	rs4821892	G	C	537.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr22	39812986	rs6001585	C	A	1819.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr22	39882149	rs77094830	ATT	A	427.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.074;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.11;ReadPosRankSum=-1.017;SOR=0.293;set=HC	GT:AD:AF:DP	1/1:6,19:0.76:25
chr22	39913420	rs710192	C	T	168.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr22	39913557	rs10854722	G	A	1070.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr22	39994105	rs760546	A	G	6106.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:4,240:0.98:244
chr22	40068051	rs4820386	C	T	489.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr22	40068853	rs2235342	T	C	1500.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr22	40069245	rs738315	T	C	1117.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr22	40070234	rs714031	T	C	339.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr22	40075473	rs7288746	T	C	627.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr22	40161181	.	TTG	T	293.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.990;ClippingRankSum=0.000;DP=91;ExcessHet=3.0103;FS=8.977;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.67;ReadPosRankSum=0.895;SOR=2.035;set=HC	GT:AD:AF:DP	0/1:57,23:0.29:80
chr22	40545595	rs6001804	A	C	313.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr22	40545797	rs34190441	T	TA	144.77	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr22	40545998	rs35899845	C	CA	1123.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr22	40546041	rs35629137	C	CA	1385.73	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr22	40546153	rs5995826	G	A	689.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr22	40574170	rs6001827	T	A	4622.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr22	40673999	rs2413621	C	T	3628.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr22	40677001	rs929070	T	C	1273.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr22	40681788	rs6001862	C	T	5629.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr22	40696633	.	C	CT	110.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.728;ClippingRankSum=0.000;DP=143;ExcessHet=3.0103;FS=3.331;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.97;ReadPosRankSum=-0.667;SOR=0.373;set=HC	GT:AD:AF:DP	0/1:91,23:0.20:114
chr22	40697377	rs5995843	A	G	3847.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr22	40708679	rs2072858	T	C	7915.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr22	40742686	rs2228415	C	T	8249.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.769;ClippingRankSum=0.000;DB;DP=316;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.44;ReadPosRankSum=1.855;SOR=0.719;set=HC	GT:AD:AF:DP	1/1:2,310:0.99:312
chr22	40757228	rs8135371	A	C	3363.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:2,121:0.98:123
chr22	40803186	rs2018393	G	T	5791.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr22	40813064	.	GA	G	114.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.536;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=1.242;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.34;ReadPosRankSum=0.374;SOR=0.886;set=HC	GT:AD:AF:DP	0/1:33,16:0.33:49
chr22	40814500	rs878756	T	C	5778.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:2,223:0.99:225
chr22	40814594	rs56211152	C	T	5694.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr22	40816749	rs2072856	G	A	683.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr22	41172351	rs6002128	A	G	1439.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr22	41194909	rs138306	C	T	3049.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr22	41195142	.	C	CT,CTT	107.73	.	AC=1,0;AF=0.500,0.00;AN=2;DP=134;set=Intersection	GT:AF:DP	0/1:0.23:80
chr22	41195191	rs113851841	A	AGTGGCATGGTT	1793.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr22	41209874	rs138322	G	A	787.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr22	41210063	rs138323	T	A	194.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr22	41227086	rs138335	C	G	797.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr22	41256660	.	C	CT	99.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.512;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;FS=1.542;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.93;ReadPosRankSum=-1.318;SOR=0.381;set=HC	GT:AD:AF:DP	0/1:23,11:0.32:34
chr22	41256802	rs103197	A	G	730.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr22	41460489	rs9611487	C	T	1910.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:2,74:0.97:76
chr22	41513094	rs2144342	G	T	343.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr22	41537234	rs6002267	G	T	2812.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr22	41545024	rs71761046	G	GT	145.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.801;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=0.940;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.08;ReadPosRankSum=0.901;SOR=0.916;set=HC	GT:AD:AF:DP	0/1:103,32:0.24:135
chr22	41548008	rs20551	A	G	2515.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr22	41550954	rs4822011	C	T	3821.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr22	41551039	rs20552	T	A	10751.77	.	AC=2;AF=1.00;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	1/1:1,412:1.00:413
chr22	41551231	.	AT	A	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.494;ClippingRankSum=0.000;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.01;ReadPosRankSum=1.407;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:37,14:0.27:51
chr22	41566595	rs6002271	C	T	2019.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr22	41568480	rs2076577	T	C	2014.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr22	41574969	rs35508493	TGTA	T	4781.73	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr22	41604399	rs4820432	G	A	837.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr22	41613188	rs9611519	C	T	4897.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:2,193:0.99:195
chr22	41613303	rs9611520	C	T	842.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr22	41615376	rs2273085	C	T	594.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr22	41617160	rs139471	T	TG	2183.73	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr22	41617318	rs139472	G	C	5667.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr22	41621714	rs2179744	G	A	980.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr22	41634584	.	G	A	4913.77	.	AC=2;AF=1.00;AN=2;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr22	41645500	rs139500	TG	T	5771.73	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:2,191:0.99:193
chr22	41645757	rs71948	C	G	4062.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr22	41650190	rs7364221	C	A	2760.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr22	41652846	rs4820435	G	T	4612.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr22	41657626	rs2235850	C	T	2243.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr22	41660964	rs139520	A	G	1525.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr22	41726053	rs4822021	G	A	3772.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr22	41736267	rs5751080	A	G	1258.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr22	41739370	rs1883828	T	C	4183.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:2,160:0.99:162
chr22	41744022	rs761366	C	G	1955.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:1,76:0.99:77
chr22	41745355	rs2281331	A	G	2151.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr22	41747717	rs3817999	G	A	1504.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:1,52:0.98:53
chr22	41752747	rs12484074	G	A	5731.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:4,222:0.98:226
chr22	41779073	rs3788584	T	A	1159.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr22	41783659	rs11546403	C	T	6512.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:3,240:0.99:243
chr22	41903743	rs2076199	G	T	1234.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr22	41903813	rs137831	A	C	4251.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr22	41913477	rs203320	T	C	1777.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr22	41914593	rs203319	C	T	1592.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr22	41919330	rs12484694	A	G	6496.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:2,245:0.99:247
chr22	41921151	rs201627352	G	A	12277.77	.	AC=2;AF=1.00;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	1/1:0,455:1.00:455
chr22	41925535	rs4822032	T	C	3379.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr22	41925767	.	G	GT	905.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.750;ClippingRankSum=0.000;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.36;MQRankSum=0.000;QD=15.10;ReadPosRankSum=-1.033;SOR=0.527;set=HC	GT:AD:AF:DP	1/1:8,52:0.87:60
chr22	41939739	rs12484228	A	G	6992.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr22	42016699	rs2267437	C	G	2882.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:1,97:0.99:98
chr22	42076381	rs5758405	C	A	3689.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr22	42089623	rs739134	T	C	12901.77	.	AC=2;AF=1.00;AN=2;DB;DP=484;set=Intersection	GT:AD:AF:DP	1/1:0,474:1.00:474
chr22	42101712	.	CT	C	95.06	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.849;ClippingRankSum=-0.000;DP=40;ExcessHet=3.0103;FS=5.880;MLEAC=1;MLEAF=0.500;MQ=60.54;MQRankSum=0.849;QD=3.40;ReadPosRankSum=-0.453;SOR=0.082;set=HC	GT:AD:AF:DP	0/1:15,13:0.46:28
chr22	42109917	rs5758431	A	G	673.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr22	42111896	rs9306355	A	T	1511.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr22	42139054	rs5751147	G	A	1791.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr22	42139078	rs5751148	A	G	2451.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr22	42140792	rs56663311	G	A	331.78	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.57;QD=47.40;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr22	42140793	rs62236786	C	T	331.78	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.57;QD=47.40;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr22	42140798	rs56138604	G	A	376.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.12;QD=41.86;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr22	42140800	rs58323591	C	CTTTG	367.74	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.12;QD=40.86;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr22	42141871	rs79093738	C	CA	3656.73	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr22	42148467	rs715498	G	A	2883.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr22	42150146	rs1534932	C	T	2432.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr22	42159229	rs2050033	G	T	6634.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:2,243:0.99:245
chr22	42172080	rs5996064	C	T	5605.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:2,213:0.99:215
chr22	42276742	rs2228314	G	C	2046.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr22	42289405	rs150115715	C	CGTTT	621.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr22	42292885	rs17848348	C	T	254.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr22	42292923	rs2269660	G	A	928.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr22	42293140	rs2228313	G	C	1017.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr22	42300428	rs146026359	TCTTC	T	2027.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr22	42300948	rs17848337	C	A	1727.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:2,69:0.97:71
chr22	42301014	rs2269662	A	G	747.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:1,30:0.97:31
chr22	42301748	rs2229442	A	G	4754.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr22	42301943	rs2269664	C	T	6335.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:1,237:1.00:238
chr22	42307226	rs76140449	T	C	1212.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr22	42307239	rs117492772	G	A	1143.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr22	42321451	rs61756766	G	A	3554.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr22	42321591	rs5996087	A	G	3761.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr22	42322016	rs73165134	C	G	5354.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr22	42322716	rs77874543	G	C	510.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr22	42334953	rs1047997	C	G	1277.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr22	42339516	rs3752591	A	G	679.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr22	42341308	rs7293091	A	G	6473.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:2,243:0.99:245
chr22	42341363	rs73165153	G	A	3190.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:2,116:0.98:118
chr22	42341451	rs377012454	AT	A	75.76	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.465;ClippingRankSum=-0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.58;ReadPosRankSum=1.242;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:2,8:0.80:10
chr22	42341934	rs35542507	A	G	3106.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr22	42342870	rs41277477	C	G	1924.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr22	42343091	rs6002555	G	A	5677.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr22	42354487	rs149263017	G	GGAGA	976.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=48.84;SOR=2.531;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr22	42390887	rs370320875	CTGTG	C,CTG	901.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.224;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=27.33;ReadPosRankSum=-0.263;SOR=1.292;set=HC	GT:AD:AF:DP	1/2:1,9,23:0.27,0.70:33
chr22	42473860	rs1807493	C	G	2921.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:1,100:0.99:101
chr22	42474138	rs1807494	C	G	1558.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr22	42475703	rs2269524	T	G	970.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr22	42486723	rs1801311	G	A	16313.77	.	AC=2;AF=1.00;AN=2;DB;DP=633;set=Intersection	GT:AD:AF:DP	1/1:2,624:1.00:626
chr22	42537023	rs2860372	T	C	531.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr22	42537643	rs79164577	G	A	6102.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;MQ=59.95;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr22	42538876	rs3020732	A	T	7547.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr22	42606257	rs2070116	C	T	5203.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr22	42783070	rs34963472	G	A	3838.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr22	42793845	rs35151068	C	T	4163.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:2,157:0.99:159
chr22	42793873	rs5996153	A	G	4029.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:2,157:0.99:159
chr22	42896553	rs71311440	TGGGGC	T	2598.73	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr22	42910376	rs9611811	G	A	281.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr22	42911103	rs145280443	C	A	38.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=19.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr22	42911257	rs1137212	A	G	219.81	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=10.000;MLEAC=2;MLEAF=1.000;MQ=39.99;MQRankSum=-1.645;QD=21.98;ReadPosRankSum=-0.253;SOR=4.608;set=HC	GT:AD:AF:DP	1/1:1,9:0.90:10
chr22	42912029	rs3201001	G	T	4110.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr22	42912342	rs11377171	C	CT	83.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.315;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=1.529;QD=1.78;ReadPosRankSum=-1.195;SOR=0.848;set=HC	GT:AD:AF:DP	0/1:35,12:0.26:47
chr22	42912501	rs5751292	A	T	497.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr22	42951978	rs146115538	GC	G	147.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.146;ClippingRankSum=-0.000;DB;DP=21;ExcessHet=3.0103;FS=8.820;MLEAC=1;MLEAF=0.500;MQ=47.38;MQRankSum=-4.259;QD=7.03;ReadPosRankSum=0.605;SOR=3.042;set=HC	GT:AD:AF:DP	0/1:12,9:0.43:21
chr22	42967270	rs147107302	C	T	3026.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr22	42972614	rs201120470	T	C	599.94	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.128;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=10.212;MLEAC=2;MLEAF=1.000;MQ=40.53;MQRankSum=-3.643;QD=28.57;ReadPosRankSum=-0.062;SOR=5.994;set=HC	GT:AD:AF:DP	1/1:2,19:0.90:21
chr22	42993786	rs11459339	C	CT	153.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.620;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=3.944;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.310;QD=2.00;ReadPosRankSum=-1.387;SOR=0.467;set=HC	GT:AD:AF:DP	0/1:55,22:0.29:77
chr22	42997944	.	TTC	T	57.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.212;ClippingRankSum=0.000;DP=291;ExcessHet=3.0103;FS=0.823;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=3.196;QD=0.22;ReadPosRankSum=0.033;SOR=0.871;set=HC	GT:AD:AF:DP	0/1:233,25:0.10:258
chr22	43026792	rs5758820	A	G	1277.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr22	43032742	rs5996200	C	T	4904.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.997;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.51;ReadPosRankSum=-0.711;SOR=0.523;set=HC	GT:AD:AF:DP	1/1:1,184:0.99:185
chr22	43035849	rs59947151	CTT	C	1162.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:6,44:0.88:50
chr22	43036356	.	CTTATTTAT	C	1957	.	AC=2;AF=1.00;AN=2;BRF=0.25;FR=1.0000;HP=2;HapScore=1;MGOF=2;MMLQ=22;MQ=60.0;NF=0;NR=7;PP=1957;QD=280.285714286;SC=GCGTGGTTCACTTATTTATTT;SbPval=1.0;Source=Platypus;TC=29;TCF=1;TCR=28;TR=7;WE=43036371;WS=43036346;set=Platypus	GT:AD:AF:DP	1/1:22,7:0.24:29
chr22	43195147	rs1128013	A	G	7506.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:2,281:0.99:283
chr22	43203137	rs738535	C	T	3144.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr22	43206950	rs1018448	A	C	3872.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr22	43213631	rs147339109	C	CA	2067.73	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:11,99:0.90:110
chr22	43218463	rs5758957	C	T	5913.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:3,221:0.99:224
chr22	43219836	rs5751378	C	G	134.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr22	43223095	rs10654612	C	CAT	2124.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr22	43230140	rs2273142	C	G	1137.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr22	43253986	rs3046483	C	CTT	855.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr22	43267336	rs3842298	T	TC	4247.73	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:2,137:0.99:139
chr22	43272085	rs5751396	G	C	938.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr22	43272792	rs5751397	C	T	2621.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr22	43272830	rs35041824	C	CAG	5542.73	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:5,147:0.97:152
chr22	43275250	rs2073199	G	A	2697.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr22	43278162	rs4822217	T	C	3762.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr22	43278220	rs2899365	C	T	5756.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr22	43280650	rs2273143	T	C	2002.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr22	43286876	rs5759012	A	G	2294.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr22	43289473	rs5759013	G	A	2572.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr22	43435668	rs2072883	G	A	861.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr22	43455592	rs17415203	G	A	3615.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr22	43455665	rs5759126	A	G	1576.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr22	43538780	.	C	CA	85.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.213;ClippingRankSum=0.000;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.29;ReadPosRankSum=-1.097;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:12,8:0.40:20
chr22	43555194	rs3937387	C	G	6661.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr22	43558926	rs6971	A	G	3099.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr22	43558972	rs6972	G	A	3883.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr22	43559137	rs6973	G	T	1353.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr22	43564963	rs138931	C	G	430.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr22	43565855	rs138933	C	T	4503.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:2,167:0.99:169
chr22	43568707	rs368382622	CT	C	68.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.747;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=10.086;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.02;ReadPosRankSum=-2.392;SOR=0.019;set=HC	GT:AD:AF:DP	0/1:23,11:0.32:34
chr22	43569608	rs138938	C	A	1806.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr22	43572308	rs56293701	T	TG	1308.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.575;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=19.25;ReadPosRankSum=0.161;SOR=0.984;set=HC	GT:AD:AF:DP	1/1:6,62:0.91:68
chr22	43575774	rs138945	A	C	3116.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr22	43576904	rs2071723	G	A	2464.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr22	43606143	rs5759217	C	T	5568.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr22	43651421	rs139029	G	A	1421.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr22	43814244	rs5759334	C	T	1403.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:2,53:0.96:55
chr22	43936229	rs146764549	T	G	7382.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr22	43976396	rs9614382	G	A	2615.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr22	43976675	rs4823114	G	A	925.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr22	44112845	rs5764234	C	T	2035.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr22	44223635	rs71313366	C	CCACACA,CCACA	368.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=12;set=Intersection	GT:AF:DP	1/1:1.00:9
chr22	44229492	rs138069	G	C	2417.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr22	44258036	rs2269601	G	C	945.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr22	44328832	rs34179073	C	T	3523.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr22	44341986	rs2294917	T	C	3473.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr22	44342116	rs2294918	A	G	7705.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr22	44342325	rs2294919	C	T	3589.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr22	44364594	rs5764434	C	T	6471.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.693;ClippingRankSum=0.000;DB;DP=246;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.31;ReadPosRankSum=-0.465;SOR=0.832;set=HC	GT:AD:AF:DP	1/1:2,244:0.99:246
chr22	44364794	rs2273031	T	C	1031.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr22	44368204	rs3177036	A	G	1487.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr22	44368728	.	A	AT	475	.	AC=2;AF=1.00;AN=2;BRF=0.38;FR=1.0000;HP=13;HapScore=4;MGOF=5;MMLQ=23;MQ=60.0;NF=7;NR=13;PP=475;QD=24.05;SC=GACCACTGCTATTTTTTTTTT;SbPval=0.81;Source=Platypus;TC=70;TCF=31;TCR=39;TR=20;WE=44368749;WS=44368718;set=Platypus	GT:AD:AF:DP	1/1:50,20:0.29:70
chr22	44368740	.	TC	T	676	.	AC=2;AF=1.00;AN=2;BRF=0.38;FR=1.0000;HP=11;HapScore=4;MGOF=5;MMLQ=23;MQ=60.0;NF=7;NR=13;PP=676;QD=34.1;SC=TTTTTTTTTTTCCCCTCCTAG;SbPval=0.87;Source=Platypus;TC=73;TCF=34;TCR=39;TR=20;WE=44368749;WS=44368718;set=Platypus	GT:AD:AF:DP	1/1:53,20:0.27:73
chr22	44368741	rs932430	C	T	1858.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.187;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.75;ReadPosRankSum=-0.790;SOR=0.803;set=HC	GT:AD:AF:DP	0/1:17,94:0.85:111
chr22	44379822	rs10452	T	C	7060.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:2,273:0.99:275
chr22	44379838	rs8418	A	G	7493.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:2,288:0.99:290
chr22	44385219	.	CTT	C	44.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.366;ClippingRankSum=-0.000;DP=11;ExcessHet=3.0103;FS=3.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.97;ReadPosRankSum=-0.120;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:5,4:0.44:9
chr22	44386281	rs7587	C	T	8473.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:2,316:0.99:318
chr22	44420118	rs111806469	C	G	46.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=15.43;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr22	44420156	rs112388263	T	A	168.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr22	44489868	rs1983609	T	C	3828.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr22	44489896	rs738479	T	C	2792.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr22	44535904	rs11270419	G	GCTTTCTGGCTGGCTCTGTCCCTCATCCTCCA	1082.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=60.15;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr22	44559645	rs139079	C	T	3556.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr22	44559842	rs139081	A	G	6073.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:2,225:0.99:227
chr22	44564297	rs139095	A	C	789.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr22	44582499	rs79478	T	C	11151.77	.	AC=2;AF=1.00;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	1/1:0,428:1.00:428
chr22	44586522	rs2272942	C	T	7524.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr22	44681612	rs135388	A	G	3602.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr22	44761884	rs112900724	G	A	2488.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr22	44965320	rs138593	G	A	5155.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr22	44967767	rs138596	C	G	1345.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr22	45126638	rs3761484	G	T	1046.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr22	45126775	rs3761485	T	C	5870.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr22	45128288	rs5764979	G	C	2068.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr22	45128449	rs5764980	G	T	152.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr22	45182207	rs739176	G	A	2218.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr22	45198009	rs2239813	A	G	8621.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,326:1.00:326
chr22	45204520	rs35386894	AT	A	596.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:4,35:0.90:39
chr22	45218223	rs136662	C	T	4839.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr22	45244930	rs2269543	C	T	6696.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr22	45255580	rs7510897	G	C	2002.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr22	45255630	rs61756769	T	C	6583.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.86;QD=45.09;SOR=0.901;set=HC	GT:AD:AF:DP	1/1:0,146:1.00:146
chr22	45255637	rs6007344	G	C	6704.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.86;QD=43.82;SOR=0.875;set=HC	GT:AD:AF:DP	1/1:0,153:1.00:153
chr22	45258495	rs8777	A	G	4488.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr22	45291833	rs3752467	A	G	691.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr22	45309653	rs3213527	C	T	969.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr22	45312345	rs8135982	C	T	2538.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr22	45316507	rs4823420	T	A	1392.73	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr22	45577372	rs372438307	TCAAGTGGAACAGGAAAGAATTCTTGGCCAGTTTATTTA	TTGGAACAGGAAAGAATTCTTGGCCAGTTTATTTA,T	1770.73	.	AC=2,0;AF=1.00,0.00;ALERT;AN=2;DB;DP=56;set=Intersection	GT:AF:DP	1/1:1.00:42
chr22	45577377	rs376698610	TGGAACAGGAAAGAATTCTTGGCCAGTTTATTTAA	T	1752.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.73;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr22	45577411	.	A	T	362	.	AC=2;AF=1.00;AN=2;BRF=0.56;FR=1.0000;HP=4;HapScore=2;MGOF=4;MMLQ=28;MQ=60.0;NF=2;NR=9;PP=362;QD=36.0701102316;SC=AGTTTATTTAAAAATCCAGTT;SbPval=0.35;Source=Platypus;TC=18;TCF=2;TCR=16;TR=11;WE=45577419;WS=45577362;set=Platypus	GT:AD:AF:DP	1/1:7,11:0.61:18
chr22	45579422	rs6006950	A	G	2368.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr22	45595721	rs5765217	A	G	3899.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr22	45598833	rs732373	C	T	3006.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr22	45603711	rs143064608	G	A	4768.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr22	45622014	rs6007506	C	T	1642.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr22	45680824	rs2255432	A	G	220.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr22	45682975	rs2673087	A	G	590.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr22	45683246	rs2673088	C	T	6233.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr22	45683304	rs1057353	G	C	6017.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr22	45718922	rs34063912	C	CTG	361.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.181;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=2.455;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.34;ReadPosRankSum=0.307;SOR=1.670;set=HC	GT:AD:AF:DP	0/1:17,18:0.51:35
chr22	45723854	rs9615108	C	G	5107.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr22	45723960	rs9614638	G	A	1001.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.414;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.37;MQRankSum=5.569;QD=32.31;ReadPosRankSum=-1.605;SOR=1.460;set=HC	GT:AD:AF:DP	0/1:2,29:0.94:31
chr22	45723968	rs28412847	C	T	877.80	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.534;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.18;MQRankSum=4.797;QD=38.17;ReadPosRankSum=-1.331;SOR=1.508;set=HC	GT:AD:AF:DP	0/1:2,21:0.91:23
chr22	45726345	rs7285172	A	G	894.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr22	45731182	rs738176	C	T	3077.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr22	45732328	rs11704481	G	A	2836.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr22	45736153	rs3827393	G	A	1202.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr22	45736485	rs2064068	C	T	1376.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr22	45741543	rs5765260	G	C	2537.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:2,87:0.98:89
chr22	45748284	rs11375006	C	CT	3967.73	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr22	45748339	rs5765275	A	G	4247.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr22	45749801	rs9614652	C	A	299.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.98;SOR=2.670;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr22	45749983	rs5764698	G	T	10156.77	.	AC=2;AF=1.00;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	1/1:0,386:1.00:386
chr22	45754517	rs5764701	G	T	837.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr22	45754558	rs5765281	A	G	1672.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr22	45755666	rs1012493	C	T	10084.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	1/1:0,382:1.00:382
chr22	45757987	rs5764704	C	T	1674.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr22	45758758	rs719925	T	C	4636.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr22	45789642	rs136603	A	C	3464.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr22	45810278	rs59404993	A	AC	8137.73	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr22	45897997	rs3810631	T	C	2025.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr22	45898074	rs3810632	T	C	6977.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr22	45898117	rs3810633	T	C	10067.77	.	AC=2;AF=1.00;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	1/1:0,380:1.00:380
chr22	45898130	rs3810634	A	T	9731.77	.	AC=2;AF=1.00;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	1/1:0,372:1.00:372
chr22	45898252	rs3810635	T	G	2144.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr22	45914461	rs7292978	G	A	935.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr22	45923827	rs136730	A	G	2827.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr22	45924001	rs136731	T	TG	483.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr22	45929577	rs105199	T	C	4267.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr22	45931262	rs2071938	C	T	2766.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr22	45937061	rs136756	G	A	4184.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr22	45937149	rs9682	C	T	6211.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr22	45937378	rs136758	C	T	1012.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.51;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr22	45937384	rs470068	G	A	978.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.49;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr22	45954029	rs2097484	G	A	700.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr22	45961213	rs1118	C	T	1362.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr22	45961904	rs1985671	G	T	238.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.88;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr22	46114244	rs2071852	C	T	2529.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:2,90:0.98:92
chr22	46114398	rs138156	G	T	6697.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr22	46156446	rs60308683	G	A	1801.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr22	46156572	rs59406530	A	T	1870.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.57;SOR=0.929;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr22	46156581	rs60514881	C	T	1848.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.09;SOR=1.347;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr22	46156622	rs58099513	C	A	725.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr22	46202925	rs3827398	A	G	5322.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:5,210:0.98:215
chr22	46345714	rs10448591	C	T	1393.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr22	46346121	rs10448592	G	A	1203.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr22	46368130	rs62226057	T	C	766.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr22	46402714	rs28477160	A	G	7009.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:2,271:0.99:273
chr22	46447795	rs141796966	T	TA	353.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:2,21:0.91:23
chr22	46449891	rs12159707	G	A	731.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr22	46498868	rs73177017	G	A	1075.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr22	46505986	rs2474020	T	C	2526.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr22	46677607	rs130642	T	C	5663.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr22	46722400	rs140054	T	C	8508.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr22	46724558	rs140053	T	C	5784.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr22	46762126	.	GGCA	G	1546	.	AC=1;AF=0.500;AN=2;BRF=0.56;FR=0.5000;HP=3;HapScore=2;MGOF=87;MMLQ=23;MQ=57.3;NF=9;NR=0;PP=1546;QD=175.555555556;SC=GAAGGTGCGGGGCAGGGAGGG;SbPval=1.0;Source=Platypus;TC=10;TCF=10;TCR=0;TR=9;WE=46762160;WS=46762106;set=Platypus	GT:AD:AF:DP	1/0:1,9:0.90:10
chr22	46762146	.	GT	G	1849	.	AC=1;AF=0.500;AN=2;BRF=0.56;FR=0.5000;HP=2;HapScore=2;MGOF=87;MMLQ=24;MQ=58.91;NF=15;NR=1;PP=1849;QD=118.626931242;SC=GAAGTTGCGGGTGGGAAGAAG;SbPval=0.91;Source=Platypus;TC=20;TCF=17;TCR=3;TR=16;WE=46762160;WS=46762106;set=Platypus	GT:AD:AF:DP	1/0:4,16:0.80:20
chr22	46762152	.	A	G	1705	.	AC=1;AF=0.500;AN=2;BRF=0.56;FR=0.5000;HP=1;HapScore=2;MGOF=87;MMLQ=15;MQ=59.46;NF=27;NR=2;PP=1705;QD=59.9921107775;SC=GCGGGTGGGAAGAAGGTGCGG;SbPval=0.99;Source=Platypus;TC=49;TCF=37;TCR=12;TR=29;WE=46762160;WS=46762106;set=Platypus	GT:AD:AF:DP	1/0:20,29:0.59:49
chr22	46765181	rs11273699	G	GTCAGGTCGCCGAC	9287.73	.	AC=2;AF=1.00;AN=2;DB;DP=240;MQ=60.09;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr22	46805772	rs11704506	C	T	7542.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr22	46858806	.	C	T	7090.77	.	AC=2;AF=1.00;AN=2;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr22	46929359	rs5767248	C	G	828.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr22	46929692	rs4823561	A	G	9066.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:0,339:1.00:339
chr22	46931077	rs4823850	G	C	3403.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr22	46931793	rs1009154	G	C	6810.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr22	46931838	rs1009155	G	A	8859.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:0,328:1.00:328
chr22	47058992	rs2542040	T	C	4141.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr22	47064665	rs9616088	C	T	1724.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr22	47064837	rs2076711	A	C	597.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr22	47068929	rs11350999	TG	T	2687.73	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr22	47068935	rs135662	G	T	2696.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr22	47070747	rs34212133	G	T	862.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr22	47073199	rs375658129	CT	C	337.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.303;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=0.877;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.283;QD=3.52;ReadPosRankSum=2.382;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:61,35:0.36:96
chr22	47095059	.	C	T	791.77	.	AC=2;AF=1.00;AN=2;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr22	47095252	.	C	T	11805.77	.	AC=2;AF=1.00;AN=2;DP=442;set=Intersection	GT:AD:AF:DP	1/1:2,438:1.00:440
chr22	47095409	rs6007953	C	G	2065.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr22	47134147	rs3747262	G	T	931.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.40;SOR=1.819;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr22	47185265	rs801606	G	T	4789.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr22	47274638	rs131869	C	T	1526.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr22	47307828	rs34153333	A	AC	648.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.76;QD=29.49;SOR=2.670;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr22	47311404	rs738935	A	T	2598.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr22	47370060	rs4436	A	G	2272.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr22	47857656	rs202008662	TTA	T	1968.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.299;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.64;MQRankSum=1.556;QD=18.57;ReadPosRankSum=2.314;SOR=0.785;set=HC	GT:AD:AF:DP	0/1:22,84:0.79:106
chr22	47859199	rs2294230	C	T	1287.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr22	47882492	rs146006978	C	T	8128.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr22	48023297	rs12053799	A	G	4833.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr22	48024982	rs5845801	C	CA	2085.73	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr22	48896933	rs8137750	C	T	1054.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr22	48940553	rs4823540	T	C	8782.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr22	48940644	rs9615919	C	T	5477.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr22	48942566	rs739155	G	A	1390.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr22	49103380	rs130147	A	G	738.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr22	49103660	rs132234	T	C	3235.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr22	49176220	rs6010527	C	T	5076.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr22	49667912	rs9616543	C	T	1167.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr22	49667985	rs7289562	G	A	2435.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr22	49668137	rs7288663	T	G	1229.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr22	49668188	rs2688112	T	C	478.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr22	49834624	rs11705513	A	G	2084.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr22	49834747	rs1016809	C	T	13862.77	.	AC=2;AF=1.00;AN=2;DB;DP=510;set=Intersection	GT:AD:AF:DP	1/1:2,505:1.00:507
chr22	49937272	rs73176963	A	G	1319.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr22	50014002	rs135877	A	G	945.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr22	50017234	rs916362	A	G	9606.77	.	AC=2;AF=1.00;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	1/1:0,360:1.00:360
chr22	50018045	rs763128	G	A	1890.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr22	50018069	rs2011097	A	G	2515.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;MQ=59.97;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr22	50018497	rs5770594	G	A	7422.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr22	50018639	rs4524218	G	A	3503.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr22	50018651	rs135879	C	T	2995.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.81;SOR=2.694;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr22	50018654	rs135880	T	A	2716.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.05;SOR=2.683;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr22	50051007	rs6009803	A	G	1951.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr22	50277835	rs910796	T	C	8174.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr22	50277883	rs910797	A	G	9864.77	.	AC=2;AF=1.00;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	1/1:0,364:1.00:364
chr22	50278438	rs910798	A	G	10490.77	.	AC=2;AF=1.00;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	1/1:0,389:1.00:389
chr22	50278568	rs910799	A	G	5663.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:2,212:0.99:214
chr22	50278642	rs910800	C	T	6306.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:2,231:0.99:233
chr22	50280136	rs5770755	T	C	15305.77	.	AC=2;AF=1.00;AN=2;DB;DP=585;set=Intersection	GT:AD:AF:DP	1/1:2,575:1.00:577
chr22	50304069	rs78916708	G	A	2904.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr22	50315904	.	TAGTCAGGACCGGCCTCTCCGATTCTTACGCCCCTCAGC	T	6959.73	.	AC=2;AF=1.00;AN=2;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr22	50356274	rs28645887	C	T	2229.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr22	50356302	rs28691713	C	T	3049.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr22	50356555	rs4078443	T	C	7424.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr22	50356693	rs4077129	T	C	5071.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr22	50356850	rs1801645	C	T	1270.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr22	50436846	rs79102851	G	GTCC	6881.73	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr22	50439194	rs9617090	C	T	3855.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr22	50471620	rs5845912	AC	A	5019.73	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr22	50479856	rs9617137	A	C	1323.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr22	50480108	rs9628315	C	T	5854.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:3,219:0.99:222
chr22	50483850	rs8138121	T	C	5451.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr22	50483889	rs8137790	A	G	3487.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr22	50483926	rs8138277	T	C	2169.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr22	50485793	rs137906	T	C	2484.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr22	50487567	rs137911	T	C	662.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr22	50488804	rs137913	CT	C	184.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.149;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=2.671;MLEAC=1;MLEAF=0.500;MQ=59.77;MQRankSum=-0.510;QD=8.40;ReadPosRankSum=-1.405;SOR=0.129;set=HC	GT:AD:AF:DP	0/1:6,16:0.73:22
chr22	50493005	.	G	T	1144.77	.	AC=2;AF=1.00;AN=2;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr22	50512617	rs2038048	C	T	3735.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:2,137:0.99:139
chr22	50515677	rs6010166	C	T	805.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr22	50518723	rs79301	A	G	4472.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr22	50523433	rs137930	T	C	732.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr22	50546788	rs138215	G	C	7869.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.08;SOR=1.228;set=HC	GT:AD:AF:DP	1/1:0,187:1.00:187
chr22	50546797	rs138216	T	C	7497.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.85;SOR=1.325;set=HC	GT:AD:AF:DP	1/1:0,171:1.00:171
chr22	50547247	rs138217	A	G	3000.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr22	50548099	rs71316996	CA	C	36.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.311;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=5.614;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.04;ReadPosRankSum=-1.516;SOR=0.086;set=HC	GT:AD:AF:DP	0/1:10,8:0.44:18
chr22	50555486	rs126241	G	C	950.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr22	50555619	rs138222	C	T	3279.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.88;SOR=0.795;set=HC	GT:AD:AF:DP	1/1:0,122:1.00:122
chr22	50564413	rs138242	A	G	310.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr22	50585626	rs4838852	A	G	428.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr22	50587979	rs138270	T	G	2366.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:2,91:0.98:93
chr22	50588131	rs138271	C	T	2314.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr22	50598296	rs17781047	G	A	1169.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr22	50616656	rs7286904	T	C	1617.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr22	50637597	rs8238	G	C	3738.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr22	50639778	rs3747942	T	C	322.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.83;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr22	50654064	rs56255915	TGG	T,TG	171.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=18;set=Intersection	GT:AF:DP	1/1:1.00:5
chr22	50656096	rs2038050	A	G	9737.77	.	AC=2;AF=1.00;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	1/1:0,368:1.00:368
chr22	50657010	rs4838864	C	G	9497.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	1/1:0,355:1.00:355
chr22	50658053	rs6537642	A	G	3508.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr22	50666507	rs55899818	C	T	285.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr22	50682046	.	C	CA	373.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.723;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.57;MQRankSum=0.962;QD=8.12;ReadPosRankSum=-0.675;SOR=0.956;set=HC	GT:AD:AF:DP	0/1:13,33:0.72:46
chr22	50685508	rs4838866	A	G	587.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr22	50687614	rs200222482	G	A	4396.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:1,161:0.99:162
chr22	50699487	rs2272856	G	C	1984.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr22	50699668	rs2272857	A	G	6677.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr22	50703572	rs10626765	C	CAG	4905.73	.	AC=2;AF=1.00;AN=2;DB;DP=121;MQ=60.09;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr22	50704661	rs2076139	T	C	5226.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr22	50705059	rs742185	A	G	15742.77	.	AC=2;AF=1.00;AN=2;DB;DP=582;set=Intersection	GT:AD:AF:DP	1/1:2,576:1.00:578
chr22	50705466	rs760748	A	G	9022.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:0,328:1.00:328
chr22	50708731	rs9617050	A	G	4050.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:3,155:0.98:158
chr22	50713866	rs1042979	G	C	3273.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr22	50714289	rs5771118	T	C	6725.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr22	50714491	rs6010224	A	C	949.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr22	50715029	rs5771119	T	C	5434.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr22	50722134	rs11547731	T	C	12495.77	.	AC=2;AF=1.00;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	1/1:1,472:1.00:473
chr22	50722939	rs146267024	A	AC	2300.73	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.88;SOR=1.379;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr22	50725553	rs28513473	T	C	2322.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:4,87:0.96:91
chr22	50727921	rs28578714	T	C	2153.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:1,74:0.99:75
chr22	50728062	rs28379706	T	C	6063.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:1,228:1.00:229
chr22	50757348	rs62241232	G	A	5358.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr22	50870546	rs34841112	G	A	1600.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr22	50874893	rs13054572	C	T	3747.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr22	50876077	rs9306550	T	C	4229.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr22	50876235	rs5770779	T	C	9152.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:0,348:1.00:348
chr22	50876357	rs5770890	C	G	8363.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr22	50877166	rs4824131	G	C	3765.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr22	50878196	rs13057311	G	A	4799.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr22	50882590	rs6010031	G	A	8078.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr22	50882752	rs59017944	CT	C	957.25	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:10,64:0.86:74
chr22	50885244	rs113982913	TTC	T	2496.73	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr22	50885775	rs1053744	A	G	13479.77	.	AC=2;AF=1.00;AN=2;DB;DP=528;set=Intersection	GT:AD:AF:DP	1/1:0,526:1.00:526
chr22	50895133	rs4824117	A	G	2841.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:2,107:0.98:109
chr22	50899755	rs35628474	AG	A	4261.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.700;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=4.244;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=40.98;ReadPosRankSum=1.621;SOR=1.129;set=HC	GT:AD:AF:DP	1/1:1,103:0.99:104
chr22	50899758	rs2073280	G	C	2694.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:3,92:0.97:95
chr22	50901259	rs9617014	G	T	3645.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr22	50901534	rs5771039	A	G	1874.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr22	50903221	rs2076714	C	T	4922.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr22	50904134	rs62241892	T	C	664.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr22	50906518	rs1983679	G	A	1691.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr22	50906917	rs9616852	C	A	2364.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr22	50913394	rs373485644	CGCG	C	502.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr22	50913429	rs4824154	T	C	511.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr22	50921644	rs13056677	G	A	7013.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr22	50925672	rs2232878	T	C	2109.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr22	50925771	rs2232879	G	A	4651.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:3,181:0.98:184
chr22	50927442	rs62239484	C	A	4670.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr22	50941985	rs6009975	T	C	1809.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr22	50943907	rs145130809	G	A	3978.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:2,147:0.99:149
chr22	50944128	rs743615	G	A	4027.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr22	50944163	rs128941	G	A	4590.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr22	50944381	rs74679952	C	T	1446.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr22	50945256	rs131824	A	G	4159.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr22	50946965	rs131823	T	C	619.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr22	50954124	rs131819	C	CT	312.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.321;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=5.561;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=0.777;QD=8.23;ReadPosRankSum=0.277;SOR=0.094;set=HC	GT:AD:AF:DP	0/1:13,25:0.66:38
chr22	50957520	rs3091397	G	A	1016.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr22	50960682	rs140524	C	T	4815.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr22	50961169	rs131813	A	G	4132.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.74;SOR=1.194;set=HC	GT:AD:AF:DP	1/1:0,149:1.00:149
chr22	50961763	.	C	T	5000.77	.	AC=2;AF=1.00;AN=2;DP=188;set=Intersection	GT:AD:AF:DP	1/1:2,185:0.99:187
chr22	50962259	rs131811	G	A	7036.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr22	50964153	rs131805	T	C	2812.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr22	50968826	rs146236313	C	CAG	3780.73	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:49,177:0.78:226
chr22	50988062	rs140519	G	T	12975.77	.	AC=2;AF=1.00;AN=2;DB;DP=493;set=Intersection	GT:AD:AF:DP	1/1:2,480:1.00:482
chr22	50988193	rs131779	A	G	5432.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:1,228:1.00:229
chr22	51009953	rs470117	C	T	5574.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr22	51010788	rs131761	T	A	2130.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr22	51011936	rs131760	T	C	4363.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr22	51015210	rs140515	G	C	4966.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr22	51015481	rs131759	G	A	2253.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr22	51018579	rs140514	A	G	2635.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr22	51020668	rs86337	C	A	2205.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr22	51042513	rs140511	C	CG	6306.73	.	AC=2;AF=1.00;AN=2;DB;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.26;QD=39.92;SOR=1.074;set=HC	GT:AD:AF:DP	1/1:0,158:1.00:158
chr22	51043278	rs3219201	G	A	1283.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr22	51043454	.	TC	T	6634.73	.	AC=2;AF=1.00;AN=2;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr22	51045190	rs1140555	C	T	3736.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr22	51045433	rs131736	C	T	4530.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr22	51045480	rs131735	G	A	2195.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr22	51048781	rs5770941	T	G	4186.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr22	51048812	rs9616798	G	C	2285.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr22	51063987	rs762674	G	C	7631.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.59;SOR=0.728;set=HC	GT:AD:AF:DP	1/1:0,287:1.00:287
chr22	51064039	rs743616	G	C	9778.77	.	AC=2;AF=1.00;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	1/1:0,356:1.00:356
chr22	51064141	rs762673	G	A	5085.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr22	51064818	rs762672	T	C	2054.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr22	51113801	.	C	CTGTGTG	456.73	.	AC=2;AF=1.00;AN=2;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr22	51135451	rs9616939	G	C	185.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr22	51135545	rs9616818	T	C	485.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr22	51135595	rs28735993	A	T	656.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr22	51137094	rs9616942	G	A	1482.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:1,56:0.98:57
chr22	51137249	rs1557620	T	C	2759.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:2,106:0.98:108
chr22	51178090	rs2285395	G	A	2740.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr22	51179000	rs2283675	C	A	1717.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr22	51182399	rs56238942	A	G	862.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr22	51182485	rs6009961	A	G	4473.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr22	51208005	rs144874090	GTC	G	8821.73	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr22	51208255	rs373678555	C	T	115.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=23.18;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr22	51215028	rs143621081	C	G	1556.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:1,50:0.98:51
chr22	51219006	rs28729663	G	A	4377.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chrX	2700157	rs5939319	G	A	4109.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:2,153:0.99:155
chrX	2700202	rs5939320	A	G	2312.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chrX	2715425	rs4484858	A	G	1603.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.87;SOR=1.888;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chrX	2724760	rs3749988	T	C	3776.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chrX	2726396	rs6567645	A	G	1290.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chrX	2729540	rs11439714	T	TA	1981.73	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:24,114:0.83:138
chrX	2732166	rs5939337	A	T	179.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chrX	2732356	rs34201156	C	CTT	2127.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.754;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=3.245;MLEAC=1;MLEAF=0.500;MQ=60.47;MQRankSum=0.267;QD=24.74;ReadPosRankSum=-1.522;SOR=0.450;set=HC	GT:AD:AF:DP	1/1:4,82:0.95:86
chrX	2748253	rs6642032	G	C	5051.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chrX	2761050	rs11797037	C	T	1212.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chrX	2774478	rs5939132	A	G	4968.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chrX	2794074	.	CTTTTTTTTT	C	916.73	.	AC=2;AF=1.00;AN=2;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.86;SOR=4.003;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chrX	2827794	rs61456366	T	TA	109.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.116;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.03;ReadPosRankSum=1.914;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:41,13:0.24:54
chrX	2832661	rs111318153	A	T	664.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.394;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.07;ReadPosRankSum=-2.344;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:72,22:0.23:94
chrX	2832668	rs139484145	A	G	697.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.525;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.07;ReadPosRankSum=-1.240;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:90,25:0.22:115
chrX	2832696	rs113031742	T	C	763.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.037;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.93;ReadPosRankSum=1.399;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:125,30:0.19:155
chrX	2832708	rs112408163	G	T	1084.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.656;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.61;ReadPosRankSum=0.801;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:128,36:0.22:164
chrX	2832715	rs73632953	T	C	1090.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.249;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.38;ReadPosRankSum=0.951;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:134,37:0.22:171
chrX	2832742	rs211648	G	C	586.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.219;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=0.640;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.15;ReadPosRankSum=-0.066;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:142,44:0.24:186
chrX	2832771	rs78142040	C	T	732.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.034;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=2.312;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.05;ReadPosRankSum=2.826;SOR=0.507;set=HC	GT:AD:AF:DP	0/1:143,38:0.21:181
chrX	2832787	rs73632954	A	G	758.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.433;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=0.709;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.77;ReadPosRankSum=1.479;SOR=0.777;set=HC	GT:AD:AF:DP	0/1:124,35:0.22:159
chrX	2832860	rs73632955	G	A	225.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.628;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=4.949;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.05;ReadPosRankSum=-1.177;SOR=1.545;set=HC	GT:AD:AF:DP	0/1:62,12:0.16:74
chrX	2832871	rs115343387	A	G	150.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.616;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=3.818;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.60;ReadPosRankSum=-0.451;SOR=1.563;set=HC	GT:AD:AF:DP	0/1:50,8:0.14:58
chrX	2832880	rs201839082	A	AAT	111.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.823;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=3.938;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.15;ReadPosRankSum=0.013;SOR=1.596;set=HC	GT:AD:AF:DP	0/1:45,7:0.13:52
chrX	2832920	.	T	TTA	190	.	AC=1;AF=0.500;AN=2;BRF=0.35;FR=0.5000;HP=1;HapScore=1;MGOF=14;MMLQ=26;MQ=60.0;NF=0;NR=4;PP=190;QD=52.0;SC=CTTTGTACTATTATTATTATT;SbPval=1.0;Source=Platypus;TC=21;TCF=2;TCR=19;TR=4;WE=2832945;WS=2832910;set=Platypus	GT:AD:AF:DP	1/0:17,4:0.19:21
chrX	2833486	rs371305173	G	A	253.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.512;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=14.043;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.05;ReadPosRankSum=-0.801;SOR=3.647;set=HC	GT:AD:AF:DP	0/1:27,9:0.25:36
chrX	2833489	.	C	G	250.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.433;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;FS=13.634;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.27;ReadPosRankSum=0.337;SOR=3.516;set=HC	GT:AD:AF:DP	0/1:31,9:0.23:40
chrX	2833507	rs73632956	T	C	282.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:33,13:0.28:46
chrX	2833533	rs369423737	GTTACGCCC	G	471.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.931;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=1.291;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.04;ReadPosRankSum=1.848;SOR=1.068;set=HC	GT:AD:AF:DP	0/1:51,16:0.24:67
chrX	2833551	rs114724695	A	T	673.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.844;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=1.178;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.36;ReadPosRankSum=0.314;SOR=0.997;set=HC	GT:AD:AF:DP	0/1:52,20:0.28:72
chrX	2833551	.	AC	TG	2337	.	AC=1;AF=0.500;AN=2;BRF=0.36;FR=0.5000;HP=2;HapScore=1;MGOF=34;MMLQ=24;MQ=60.0;NF=13;NR=2;PP=2337;QD=159.364524991;SC=CTATGTTCAAACCTGAGGCCG;SbPval=0.83;Source=Platypus;TC=58;TCF=46;TCR=12;TR=15;WE=2833560;WS=2833523;set=Platypus	GT:AD:AF:DP	1/0:43,15:0.26:58
chrX	2833552	rs115030126	C	G	673.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.716;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=1.087;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.10;ReadPosRankSum=0.072;SOR=0.855;set=HC	GT:AD:AF:DP	0/1:53,21:0.28:74
chrX	2833580	rs112594989	A	G	613.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:82,31:0.27:113
chrX	2833605	rs111939179	C	T	743.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:104,40:0.28:144
chrX	2833628	rs373216270	A	C	1492.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.541;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.48;ReadPosRankSum=1.128;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:132,44:0.25:176
chrX	2833631	rs377542415	A	G	563.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.128;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=0.647;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.13;ReadPosRankSum=1.322;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:137,43:0.24:180
chrX	2833638	rs370769167	C	T	1364.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.248;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=0.630;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.03;ReadPosRankSum=2.115;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:150,44:0.23:194
chrX	2833643	rs115332247	C	A	1542.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.531;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=1.285;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.99;ReadPosRankSum=0.688;SOR=0.577;set=HC	GT:AD:AF:DP	0/1:143,50:0.26:193
chrX	2833749	rs112924969	T	C	884.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.558;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=2.710;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.41;ReadPosRankSum=-1.323;SOR=1.063;set=HC	GT:AD:AF:DP	0/1:107,31:0.22:138
chrX	2833752	rs115063380	C	T	890.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.635;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=5.435;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.85;ReadPosRankSum=-1.030;SOR=1.257;set=HC	GT:AD:AF:DP	0/1:102,28:0.22:130
chrX	2833769	rs199688335	T	C	600.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.611;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=0.957;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.72;ReadPosRankSum=-0.341;SOR=0.917;set=HC	GT:AD:AF:DP	0/1:84,21:0.20:105
chrX	2833771	rs200976696	T	C	600.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.462;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.959;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.83;ReadPosRankSum=-0.483;SOR=0.905;set=HC	GT:AD:AF:DP	0/1:82,21:0.20:103
chrX	2833780	rs115636789	C	T	663.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.274;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=1.009;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.99;ReadPosRankSum=-0.735;SOR=0.916;set=HC	GT:AD:AF:DP	0/1:75,20:0.21:95
chrX	2833803	rs112173548	C	T	224.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.814;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=1.290;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.35;ReadPosRankSum=0.077;SOR=0.922;set=HC	GT:AD:AF:DP	0/1:53,14:0.21:67
chrX	2833855	rs73632957	TT	GC	352.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;JOINED;set=Intersection	GT:AD:AF:DP	0/1:27,11:0.29:38
chrX	2835831	rs75490251	C	T	440.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.055;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=11.574;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.79;ReadPosRankSum=-0.085;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:64,28:0.30:92
chrX	2835863	rs78034736	G	T	767.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:109,48:0.31:157
chrX	2835964	rs73632972	G	A	1592.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.208;ClippingRankSum=0.000;DB;DP=255;ExcessHet=3.0103;FS=0.555;MLEAC=1;MLEAF=0.500;MQ=60.34;MQRankSum=5.384;QD=6.30;ReadPosRankSum=1.191;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:197,56:0.22:253
chrX	2835985	.	G	A	1519.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.915;ClippingRankSum=0.000;DP=238;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.36;MQRankSum=5.613;QD=6.44;ReadPosRankSum=0.374;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:187,49:0.21:236
chrX	2835989	rs143238998	A	C	1544.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.032;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.37;MQRankSum=5.657;QD=6.60;ReadPosRankSum=0.249;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:186,48:0.21:234
chrX	2835993	.	G	A	1511.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.298;ClippingRankSum=0.000;DP=235;ExcessHet=3.0103;FS=0.586;MLEAC=1;MLEAF=0.500;MQ=60.37;MQRankSum=5.569;QD=6.49;ReadPosRankSum=-0.348;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:184,49:0.21:233
chrX	2835995	rs150899882	C	A	1466.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.690;ClippingRankSum=0.000;DB;DP=232;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.37;MQRankSum=5.525;QD=6.38;ReadPosRankSum=-0.702;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:181,49:0.21:230
chrX	2835998	rs113556864	CCCACGCCGG	C	1451.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.393;ClippingRankSum=0.000;DB;DP=239;ExcessHet=3.0103;FS=1.269;MLEAC=1;MLEAF=0.500;MQ=60.36;MQRankSum=5.701;QD=6.13;ReadPosRankSum=-0.865;SOR=0.854;set=HC	GT:AD:AF:DP	0/1:189,48:0.20:237
chrX	2836041	rs67272620	A	T	1195.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.382;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=5.440;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.36;ReadPosRankSum=-0.975;SOR=1.070;set=HC	GT:AD:AF:DP	0/1:149,39:0.21:188
chrX	2836047	rs67359049	C	T	1248.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.760;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=3.301;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.82;ReadPosRankSum=-0.797;SOR=1.023;set=HC	GT:AD:AF:DP	0/1:145,38:0.21:183
chrX	2836060	rs113318393	G	A	1238.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.013;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=1.409;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.77;ReadPosRankSum=-1.080;SOR=0.887;set=HC	GT:AD:AF:DP	0/1:142,41:0.22:183
chrX	2836084	rs73632973	C	G	1202.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.408;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.26;ReadPosRankSum=-0.548;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:147,45:0.23:192
chrX	2836138	rs73632974	G	A	705.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.495;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=1.487;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.50;ReadPosRankSum=0.750;SOR=0.514;set=HC	GT:AD:AF:DP	0/1:114,43:0.27:157
chrX	2836181	rs73632975	A	T	1177.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.686;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=5.064;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.27;ReadPosRankSum=0.571;SOR=0.363;set=HC	GT:AD:AF:DP	0/1:90,37:0.29:127
chrX	2836184	rs73632976	C	T	1180.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.592;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=3.975;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.68;ReadPosRankSum=0.396;SOR=0.379;set=HC	GT:AD:AF:DP	0/1:86,36:0.30:122
chrX	2836211	rs73632977	A	T	289.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.670;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.41;ReadPosRankSum=0.637;SOR=0.554;set=HC	GT:AD:AF:DP	0/1:63,22:0.26:85
chrX	2836238	rs73632978	G	A	312.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:39,18:0.32:57
chrX	2836283	rs115556892	A	G	293.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.400;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=4.042;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.64;ReadPosRankSum=0.643;SOR=0.204;set=HC	GT:AD:AF:DP	0/1:24,10:0.29:34
chrX	2836285	rs114112932	T	C	293.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.423;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=1.901;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.90;ReadPosRankSum=0.588;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:23,10:0.30:33
chrX	2836293	rs138206271	A	G	286.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.946;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=2.062;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.56;ReadPosRankSum=1.268;SOR=0.274;set=HC	GT:AD:AF:DP	0/1:21,9:0.30:30
chrX	2836317	rs113510342	G	T	285.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:18,9:0.33:27
chrX	2836336	rs112348737	G	C	255.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:12,8:0.40:20
chrX	2836349	rs111614007	G	C	151.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:7,5:0.42:12
chrX	2836373	rs113026716	A	G	105.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.807;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=3.090;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.81;ReadPosRankSum=0.349;SOR=2.494;set=HC	GT:AD:AF:DP	0/1:8,4:0.33:12
chrX	2847133	rs3747394	A	G	1506.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chrX	2847157	rs3747395	C	G	1710.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chrX	2852915	rs11055	C	T	537.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chrX	2852951	rs11222	G	A	923.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chrX	2856155	rs35143646	C	T	1678.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chrX	2871011	rs211640	G	C	2160.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chrX	2877835	rs211636	G	A	810.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chrX	2877876	rs211637	T	C	434.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chrX	2878296	rs5982940	T	C	96.28	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=52.34;QD=32.09;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chrX	2878304	rs12836850	C	T	131.03	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.69;QD=32.76;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chrX	2986061	.	CT	C	143.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.101;ClippingRankSum=0.000;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.40;ReadPosRankSum=0.038;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:38,22:0.37:60
chrX	3028260	rs17051478	C	T	4788.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chrX	3028289	rs5983011	C	T	5097.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:1,192:0.99:193
chrX	3028385	rs5983012	G	A	1929.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:1,68:0.99:69
chrX	3028405	rs5982644	C	T	1295.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:1,46:0.98:47
chrX	3030181	rs7053230	G	A	2065.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chrX	3030426	rs10522044	G	A	11391.77	.	AC=2;AF=1.00;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	1/1:3,421:0.99:424
chrX	3190121	.	CGT	C	117	.	AC=1;AF=0.500;AN=2;BRF=0.2;FR=0.5000;HP=2;HapScore=1;MGOF=14;MMLQ=24;MQ=60.0;NF=9;NR=0;PP=117;QD=13.5555555556;SC=GCTTAATGAGCGTGTGTGTGT;SbPval=1.0;Source=Platypus;TC=34;TCF=25;TCR=9;TR=9;WE=3190132;WS=3190111;set=Platypus	GT:AD:AF:DP	1/0:25,9:0.26:34
chrX	3228411	rs1635233	G	A	3115.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chrX	3228891	rs1635235	A	G	4677.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chrX	3235724	rs1635242	C	T	1548.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chrX	3238014	rs113639501	CA	C	59.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.028;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=6.052;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.76;ReadPosRankSum=-0.252;SOR=0.939;set=HC	GT:AD:AF:DP	0/1:60,19:0.24:79
chrX	3238167	rs1635245	T	G	1249.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chrX	3238733	rs1974522	G	A	7314.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chrX	3239545	rs1726199	C	T	1989.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chrX	3240343	rs1635246	G	A	3753.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.25;SOR=0.794;set=HC	GT:AD:AF:DP	1/1:0,143:1.00:143
chrX	3241050	rs1635247	G	A	3429.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chrX	3241256	rs5983119	T	C	3140.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chrX	3241284	rs1635248	A	G	3005.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chrX	3241317	rs1635249	T	C	2959.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chrX	3241791	rs1635250	G	A	3828.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chrX	3539376	rs369523977	CA	C	219.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.418;ClippingRankSum=0.000;DB;DP=212;ExcessHet=3.0103;FS=6.286;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.17;ReadPosRankSum=-0.734;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:139,49:0.26:188
chrX	3592725	rs10871864	G	A	6244.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:2,233:0.99:235
chrX	3592847	rs7880937	C	T	1694.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chrX	3736489	rs1133336	C	T	6756.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chrX	5811530	rs3747334	G	C	2327.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.79;QD=47.51;SOR=7.824;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chrX	5811532	rs3747333	G	A	2327.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.65;QD=42.32;SOR=5.784;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chrX	5821786	rs7049300	G	A	7372.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:2,264:0.99:266
chrX	6975782	rs868756	C	G	5442.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chrX	6995315	rs2379206	C	T	3086.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chrX	6995417	rs2379207	C	T	6880.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chrX	6995438	rs1803675	C	T	7218.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chrX	7023678	rs1131197	G	A	660.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chrX	7066051	rs1473666	A	C	8081.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chrX	8095173	rs1037521	T	A	1465.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chrX	8138080	rs1058239	G	C	1113.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chrX	8138160	rs1058238	T	C	1152.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.91;QD=38.43;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chrX	8138165	rs1058237	C	G	1024.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.87;QD=48.80;SOR=1.230;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chrX	8138170	rs75657421	CT	GC	961.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=59.10;QD=45.80;SOR=1.230;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chrX	8138182	rs41305169	A	G	626.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;MQ=57.53;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chrX	8270569	rs199979341	AAAAGAAAGAAAG	A	1096.73	.	AC=2;AF=1.00;AN=2;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.61;MQRankSum=0.000;QD=36.56;SOR=3.126;set=HC	GT:AD:AF:DP	1/1:1,29:0.97:30
chrX	8503641	rs809446	G	A	3078.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chrX	8504773	rs808120	G	T	865.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chrX	8504833	rs808119	C	T	2617.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chrX	8653386	rs184483198	T	A	547.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.91;SOR=1.136;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chrX	9000594	rs200449273	TG	T	309.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.168;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=2.715;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=0.651;QD=14.08;ReadPosRankSum=0.746;SOR=0.197;set=HC	GT:AD:AF:DP	0/1:5,17:0.77:22
chrX	9050570	rs111872205	CAG	C	365.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.081;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=2.429;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.20;ReadPosRankSum=1.948;SOR=0.352;set=HC	GT:AD:AF:DP	0/1:68,19:0.22:87
chrX	9729001	rs12560076	G	A	423.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.54;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chrX	9935526	rs5934730	G	T	10398.77	.	AC=2;AF=1.00;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	1/1:0,368:1.00:368
chrX	9935844	rs5934731	C	T	7231.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chrX	10062079	rs5934746	T	A	2156.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:1,75:0.99:76
chrX	10062163	rs5934747	G	C	5051.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:2,187:0.99:189
chrX	10085674	rs6530368	T	C	6149.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:1,239:1.00:240
chrX	10095982	rs191052624	G	A	4175.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chrX	10102695	.	A	AT	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.357;ClippingRankSum=0.000;DP=137;ExcessHet=3.0103;FS=4.148;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.35;ReadPosRankSum=1.226;SOR=0.275;set=HC	GT:AD:AF:DP	0/1:85,16:0.16:101
chrX	10109658	rs36042905	T	TA	48.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.195;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.74;ReadPosRankSum=0.493;SOR=0.202;set=HC	GT:AD:AF:DP	0/1:19,9:0.32:28
chrX	10166198	rs2240019	A	C	1441.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chrX	10491233	.	C	CA	93.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.611;ClippingRankSum=0.000;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=1.302;QD=2.23;ReadPosRankSum=1.881;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:29,13:0.31:42
chrX	10533042	rs5901437	TA	T	235.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.825;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=3.737;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=0.619;QD=6.20;ReadPosRankSum=0.957;SOR=1.639;set=HC	GT:AD:AF:DP	0/1:9,29:0.76:38
chrX	11157535	rs1009758	G	C	3247.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chrX	11157741	rs12395429	C	A	1131.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chrX	11174565	rs5934967	C	G	878.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chrX	11174799	rs720062	C	A	2896.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chrX	11200070	rs11420388	T	TA	123.80	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.253;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.25;ReadPosRankSum=-0.623;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:5,10:0.67:15
chrX	11200260	rs7060317	G	C	8237.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:1,305:1.00:306
chrX	11207252	rs2072125	G	C	1075.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chrX	11284153	.	CTG	C	1020.73	.	AC=2;AF=1.00;AN=2;ClippingRankSum=-0.000;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=39.26;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:1,25:0.96:26
chrX	11308610	.	CA	C	513.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.115;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=2.315;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.17;ReadPosRankSum=-0.189;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:4,35:0.90:39
chrX	11313027	rs946252	T	C	4413.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chrX	11316742	rs2106416	C	T	9899.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	1/1:2,375:0.99:377
chrX	11336936	rs5935005	G	A	621.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chrX	11786839	rs2525868	T	C	1534.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chrX	12628036	rs2304605	A	C	2191.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:1,76:0.99:77
chrX	12628049	rs2304604	T	C	1750.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chrX	12633034	rs6654760	T	C	1770.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chrX	12722616	rs4469660	C	G	5315.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chrX	12809661	rs1731469	G	A	7825.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chrX	12837558	rs5935399	C	T	659.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chrX	12838934	rs917580	A	G	5087.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chrX	12903659	rs179008	A	T	2886.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chrX	12937804	rs5744080	C	T	14419.77	.	AC=2;AF=1.00;AN=2;DB;DP=542;set=Intersection	GT:AD:AF:DP	1/1:1,538:1.00:539
chrX	12939112	rs2407992	G	C	10921.77	.	AC=2;AF=1.00;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	1/1:0,392:1.00:392
chrX	12939412	rs3747414	C	A	13864.77	.	AC=2;AF=1.00;AN=2;DB;DP=521;set=Intersection	GT:AD:AF:DP	1/1:0,508:1.00:508
chrX	12939928	rs2109135	T	C	5463.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chrX	13337059	rs4830842	C	T	6546.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:1,243:1.00:244
chrX	13613061	rs17256423	C	T	3004.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chrX	13681115	rs2361159	C	T	8273.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chrX	13681638	rs5935649	C	T	4125.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chrX	13681679	rs5935650	G	T	2248.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chrX	13775752	rs36052228	AT	A	88.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.765;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.03;ReadPosRankSum=-1.552;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:12,10:0.45:22
chrX	13779409	rs112117780	A	AT	80.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.457;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=1.551;QD=2.31;ReadPosRankSum=-0.204;SOR=1.005;set=HC	GT:AD:AF:DP	0/1:25,10:0.29:35
chrX	13956661	rs3833419	CG	C	2222.73	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chrX	14599230	rs2074210	A	G	592.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chrX	14599572	rs2074211	A	G	2175.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chrX	14625399	rs377596384	C	CT	778.92	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.597;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=1.380;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.74;ReadPosRankSum=0.875;SOR=0.439;set=HC	GT:AD:AF:DP	0/1:22,58:0.72:80
chrX	14627022	rs35800731	CT	C	151.19	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.223;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=7.56;ReadPosRankSum=0.318;SOR=0.631;set=HC	GT:AD:AF:DP	1/1:3,17:0.85:20
chrX	14708781	.	TTC	T	111	.	AC=1;AF=0.500;AN=2;BRF=0.41;FR=0.5000;HP=2;HapScore=1;MGOF=4;MMLQ=28;MQ=60.0;NF=4;NR=5;PP=111;QD=13.1111111111;SC=TAGTCTTTCTTTCTCTCTCTC;SbPval=0.51;Source=Platypus;TC=28;TCF=11;TCR=17;TR=9;WE=14708790;WS=14708771;set=Platypus	GT:AD:AF:DP	0/1:19,9:0.32:28
chrX	14868806	rs2905223	A	G	1060.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.57;SOR=0.929;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chrX	14868853	.	T	TA	102.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.573;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.14;ReadPosRankSum=0.381;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:11,9:0.45:20
chrX	14930353	rs11400370	C	CT	836.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:2,36:0.95:38
chrX	15262813	rs112382242	T	TG	922.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.090;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=2.534;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.37;ReadPosRankSum=0.081;SOR=1.132;set=HC	GT:AD:AF:DP	0/1:15,54:0.78:69
chrX	15262814	rs28628283	T	A	2786.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=33.18;SOR=1.371;set=HC	GT:AD:AF:DP	1/1:1,83:0.99:84
chrX	15262814	.	TA	GA	373	.	AC=1;AF=0.500;AN=2;BRF=0.39;FR=1.0000,1.0000;HP=11;HapScore=4;MGOF=9;MMLQ=12;MQ=59.9;NF=3,12;NR=34,11;PP=373,347;QD=10.3243243243;SC=TCCTTTTTTTTAAAAAAAAAA;SbPval=0.56;Source=Platypus;TC=50;TCF=4;TCR=46;TR=37,23;WE=15262822;WS=15262796;set=Platypus	GT:AD:AF:DP	0/1:51,23:0.31:74
chrX	15262814	.	TA	TAA	373	.	AC=1;AF=0.500;AN=2;BRF=0.39;FR=1.0000,1.0000;HP=11;HapScore=4;MGOF=9;MMLQ=12;MQ=59.9;NF=3,12;NR=34,11;PP=373,347;QD=10.3243243243;SC=TCCTTTTTTTTAAAAAAAAAA;SbPval=0.56;Source=Platypus;TC=50;TCF=4;TCR=46;TR=37,23;WE=15262822;WS=15262796;set=Platypus	GT:AD:AF:DP	0/1:13,37:0.74:50
chrX	15266819	rs1139868	C	T	2154.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chrX	15270593	rs12852688	C	G	1477.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chrX	15273106	rs35149491	T	TA	306.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.570;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.39;MQRankSum=0.487;QD=14.61;ReadPosRankSum=1.860;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:2,19:0.90:21
chrX	15301624	rs41309559	G	C	3456.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chrX	15308103	rs5934230	G	T	228.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chrX	15308163	rs6628942	A	T	440.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.93;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chrX	15332451	rs201659261	CT	C	183.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.470;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=2.602;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.87;ReadPosRankSum=-0.760;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:39,25:0.39:64
chrX	15332558	rs5935944	A	G	5920.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chrX	15333842	rs4830529	T	A	317.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chrX	15343401	rs35222742	C	CAA	492.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chrX	15353483	rs45538433	G	C	8021.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chrX	15353689	rs4830938	T	C	3259.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chrX	15373469	rs4531212	C	T	1756.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chrX	15403030	rs6632532	G	T	2647.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:4,96:0.96:100
chrX	15498034	rs5935986	T	C	810.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chrX	15554625	rs61657459	CA	C	283.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.291;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.76;ReadPosRankSum=0.997;SOR=2.448;set=HC	GT:AD:AF:DP	1/1:1,17:0.94:18
chrX	15584288	rs4646180	C	T	1357.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chrX	15596143	rs113691336	C	CATAAG	3279.73	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chrX	15607650	rs971249	T	C	1112.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chrX	15662935	rs5936000	T	C	1074.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chrX	15677315	rs373505913	CCA	C	187.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.234;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=1.308;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=2.042;QD=3.13;ReadPosRankSum=1.814;SOR=0.467;set=HC	GT:AD:AF:DP	0/1:48,12:0.20:60
chrX	15682539	rs113351343	A	T	4082.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chrX	15706830	rs4060	C	A	1806.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.04;QD=27.38;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chrX	15711209	rs1996225	C	T	2182.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:8,87:0.92:95
chrX	15768393	rs12013305	T	C	115.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chrX	15782563	rs148746758	G	A	479.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chrX	15792527	rs4364812	T	A	1240.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.71;QD=28.20;SOR=1.105;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chrX	15794764	rs5980183	G	A	437.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chrX	15794815	rs5936050	G	A	1391.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chrX	15808795	rs4830994	T	C	1380.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chrX	15817963	rs5980192	A	G	1111.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.827;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=20.98;ReadPosRankSum=2.695;SOR=1.007;set=HC	GT:AD:AF:DP	1/1:4,49:0.92:53
chrX	15827449	rs113302354	A	T	1997.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chrX	15827524	rs5980193	T	G	1063.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chrX	15827563	rs6629131	C	T	553.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chrX	16189670	rs12839379	G	A	654.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chrX	16608793	rs1527805	G	A	4593.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chrX	16701092	rs10588742	GTTC	G	1885.73	.	AC=2;AF=1.00;AN=2;DB;DP=43;MQ=60.25;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chrX	16709626	rs5980322	G	A	6124.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chrX	16762002	rs4830562	A	G	1658.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chrX	16850775	rs142675324	A	C	4115.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chrX	16852327	rs3747367	A	C	693.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chrX	16859628	rs5924530	G	A	4951.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chrX	16872015	rs11305571	AT	A	532.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.225;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=8.300;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=0.748;QD=12.39;ReadPosRankSum=0.338;SOR=2.670;set=HC	GT:AD:AF:DP	0/1:6,37:0.86:43
chrX	16873058	rs5924532	A	C	2548.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.28;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chrX	16873108	rs150641871	GTT	G	2359.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.416;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.69;ReadPosRankSum=1.828;SOR=0.768;set=HC	GT:AD:AF:DP	1/1:13,91:0.88:104
chrX	16873176	rs66524293	CT	C	493.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.542;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=2.722;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.11;ReadPosRankSum=-0.377;SOR=0.223;set=HC	GT:AD:AF:DP	1/1:3,32:0.91:35
chrX	16876980	rs4828536	G	A	4261.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chrX	16887655	rs67984110	C	T	4887.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chrX	17070688	rs933946	G	A	498.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chrX	17080492	rs713355	G	A	618.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chrX	17092152	rs1346246	G	T	3733.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chrX	17122102	rs714070	C	T	414.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chrX	17157148	rs1946395	T	A	873.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chrX	17653599	rs7884177	C	G	1325.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chrX	17705850	rs5901624	C	CT	10228.73	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chrX	17710353	rs201128429	CTT	C	1440.73	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:12,54:0.82:66
chrX	17746244	rs3747295	T	C	6493.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chrX	17746669	rs10643465	C	CTGTT	1259.86	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:2,31:0.94:33
chrX	17763728	rs16980670	G	A	853.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chrX	17818961	rs149778741	C	T	3754.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chrX	17819377	rs6527818	T	C	4658.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chrX	18265832	rs16992372	T	C	2542.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chrX	18276078	.	AAAGGGAAGGGGG	A	1102.73	.	AC=2;AF=1.00;AN=2;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.62;QD=42.41;SOR=6.593;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chrX	18278199	rs5909435	T	C	951.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chrX	18342034	rs3213544	G	A	3756.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chrX	18582646	rs371996193	GAT	G	60.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.741;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=2.740;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.89;ReadPosRankSum=0.743;SOR=1.845;set=HC	GT:AD:AF:DP	0/1:16,5:0.24:21
chrX	18638082	rs35478150	A	C	731.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chrX	18671795	rs56396491	AT	GA	2486.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chrX	18779721	rs2269584	A	G	1387.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chrX	18779847	rs58142596	C	CT	58.27	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:1,5:0.83:6
chrX	18800531	rs11360277	CT	C	467.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.248;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=2.409;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.99;ReadPosRankSum=-0.628;SOR=1.739;set=HC	GT:AD:AF:DP	1/1:4,32:0.89:36
chrX	18824794	rs2239437	T	G	724.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chrX	18844012	rs2273247	G	A	1655.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chrX	18929128	rs11291764	CT	C	831.37	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:10,56:0.85:66
chrX	19024426	rs368756788	TA	T	129.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.144;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=5.664;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.71;ReadPosRankSum=0.267;SOR=1.467;set=HC	GT:AD:AF:DP	0/1:55,21:0.28:76
chrX	19037666	rs372068061	AT	A	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.293;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=1.185;QD=1.23;ReadPosRankSum=-1.077;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:27,15:0.36:42
chrX	19041592	rs5909263	C	T	1518.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chrX	19058405	rs6633185	C	T	241.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chrX	19086800	.	G	GA	87.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.086;ClippingRankSum=0.000;DP=157;ExcessHet=3.0103;FS=2.038;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=4.355;QD=0.58;ReadPosRankSum=0.609;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:122,28:0.19:150
chrX	19363863	rs71737866	TC	T	242.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.232;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=5.174;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.06;ReadPosRankSum=-0.665;SOR=0.089;set=HC	GT:AD:AF:DP	0/1:28,20:0.42:48
chrX	19478294	rs5909118	T	A	2322.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chrX	19478336	rs61014139	C	CA	1079.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chrX	19482476	rs5909299	C	T	3466.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chrX	19688957	.	CA	C	733.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.121;ClippingRankSum=0.000;DP=193;ExcessHet=3.0103;FS=1.404;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.706;QD=4.34;ReadPosRankSum=0.564;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:88,81:0.48:169
chrX	20284862	rs11276983	GGCGGCA	G	1532.73	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=64.66;QD=36.49;SOR=1.900;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chrX	21861434	rs3213451	A	G	5272.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:2,195:0.99:197
chrX	21875821	rs11339991	TA	T	486.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chrX	22116211	.	G	GT	124.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.268;ClippingRankSum=0.000;DP=56;ExcessHet=3.0103;FS=4.558;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.45;ReadPosRankSum=-1.676;SOR=1.211;set=HC	GT:AD:AF:DP	0/1:32,19:0.37:51
chrX	22129512	rs4824224	C	T	6852.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chrX	23682589	rs4828890	T	G	873.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chrX	23682877	rs477914	T	C	1615.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chrX	23682976	rs476316	A	G	522.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chrX	23685964	rs496067	T	C	5630.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chrX	23689636	rs513572	AT	TC	8677.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chrX	23693084	.	AT	A	128.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.816;ClippingRankSum=0.000;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=2.677;QD=1.13;ReadPosRankSum=-1.861;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:86,28:0.25:114
chrX	23697485	rs795493	G	A	1417.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chrX	23700473	rs552105	G	A	857.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chrX	23700693	rs795489	A	G	1702.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chrX	23701662	rs2665364	G	A	343.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chrX	23723554	rs580192	C	T	3954.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chrX	23724663	rs473128	G	A	328.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.15;QD=27.40;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chrX	23739857	rs5970601	A	G	854.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chrX	23740681	rs55779124	C	CAA	475.50	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:3,22:0.88:25
chrX	23928489	rs2707164	C	T	1564.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chrX	23934202	rs2520230	A	G	195.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chrX	23945611	rs2707144	G	T	740.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.49;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chrX	24073761	rs36018672	C	T	5375.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chrX	24084241	rs150782745	G	GT,GTT	1479.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.708;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=3.278;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=17.41;ReadPosRankSum=-1.187;SOR=1.362;set=HC	GT:AD:AF:DP	1/2:8,54,23:0.64,0.27:85
chrX	24536954	.	GCA	G	131.73	.	AC=1;AF=0.500;AN=2;DP=44;set=Intersection	GT:AD:AF:DP	0/1:26,11:0.30:37
chrX	24580746	rs1882403	A	G	880.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chrX	24593453	rs3833417	GA	G	2057.73	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:13,117:0.90:130
chrX	24593513	rs3747401	T	G	1790.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chrX	24597316	.	A	AAG	266.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.545;ClippingRankSum=-0.000;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.04;ReadPosRankSum=2.323;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:6,13:0.68:19
chrX	24665381	rs140304068	A	AC	304.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chrX	24665391	.	CCT	C	43.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.385;ClippingRankSum=-0.000;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.37;ReadPosRankSum=-0.352;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:7,3:0.30:10
chrX	24751958	rs4058344	T	C	1121.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chrX	24760276	rs113389943	AC	A	325.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.884;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=3.324;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.08;ReadPosRankSum=0.804;SOR=0.160;set=HC	GT:AD:AF:DP	0/1:26,20:0.43:46
chrX	24766651	rs3764770	G	A	1031.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chrX	24833074	.	G	GT	96.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.758;ClippingRankSum=0.000;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.76;ReadPosRankSum=-0.107;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:38,17:0.31:55
chrX	26157058	rs5943844	TT	CC	2444.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chrX	26157220	rs5944317	C	T	6291.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chrX	26157792	rs5944318	C	T	3705.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chrX	26158233	rs5944319	C	A	316.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chrX	26179532	rs5943854	A	G	8334.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chrX	26212305	.	T	G	399	.	AC=2;AF=1.00;AN=2;BRF=0.45;FR=1.0000;HP=3;HapScore=2;MGOF=91;MMLQ=24;MQ=50.0;NF=6;NR=8;PP=399;QD=30.9836580391;SC=CCACTGGCTCTCCTGATGCAG;SbPval=0.6;Source=Platypus;TC=14;TCF=6;TCR=8;TR=14;WE=26212313;WS=26212295;set=Platypus	GT:AD:AF:DP	1/1:0,14:1.00:14
chrX	26213219	rs5986312	T	C	6786.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:2,236:0.99:238
chrX	27479339	rs12842916	A	G	5604.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:3,202:0.99:205
chrX	27765399	.	AGAGGAGGAG	A	1806.73	.	AC=2;AF=1.00;AN=2;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.80;QD=39.28;SOR=1.364;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chrX	27839572	rs1368769	T	C	3401.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chrX	27999146	rs41311803	C	T	9949.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.343;ClippingRankSum=0.000;DB;DP=426;ExcessHet=3.0103;FS=1.678;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.78;ReadPosRankSum=1.336;SOR=0.507;set=HC	GT:AD:AF:DP	1/1:5,381:0.99:386
chrX	28807345	rs12009069	G	A	397.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chrX	28807442	rs6526806	G	A	1882.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chrX	29417510	rs4829347	C	A	528.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chrX	30236658	rs6526962	T	C	1844.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chrX	30236878	rs2529541	G	A	3968.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chrX	30236913	rs5973792	G	A	4686.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chrX	30237003	rs2074793	C	T	5466.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:1,201:1.00:202
chrX	30254376	rs2071309	T	C	3669.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chrX	30261002	rs2071311	A	G	3704.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chrX	30261158	rs2856733	G	C	9284.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:0,340:1.00:340
chrX	30577846	rs887369	A	C	7757.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:1,277:1.00:278
chrX	30671896	rs12854653	G	C	1272.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chrX	30695941	rs11400828	C	CA	365.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.252;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.55;ReadPosRankSum=1.066;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:4,23:0.85:27
chrX	30695959	.	G	GA	80.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.669;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.83;ReadPosRankSum=-0.326;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:33,11:0.25:44
chrX	30872602	rs5927629	A	G	6234.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chrX	30877477	.	C	CCACACACACACACACACA,CCACACACACACACA,CCACACACACACACACA	276.77	.	AC=2,0,0;AF=1.00,0.00,0.00;AN=2;DP=6;set=Intersection	GT:AF:DP	1/1:1.00:5
chrX	30877801	rs58473340	TAAA	T	1433.80	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.303;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=30.51;ReadPosRankSum=-2.098;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:3,44:0.94:47
chrX	31089930	rs438870	C	T	8578.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chrX	31132797	rs10536600	CGG	C	800.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chrX	31132806	rs1269041	G	T	809.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=8.451;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=38.56;ReadPosRankSum=1.570;SOR=3.698;set=HC	GT:AD:AF:DP	1/1:1,20:0.95:21
chrX	31187397	.	C	CA	79.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.298;ClippingRankSum=0.000;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.99;ReadPosRankSum=0.275;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:11,9:0.45:20
chrX	31195897	.	G	GA	107.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.702;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=7.344;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=1.513;QD=2.45;ReadPosRankSum=-1.047;SOR=0.094;set=HC	GT:AD:AF:DP	0/1:30,14:0.32:44
chrX	31200832	rs72515393	AT	A	2910.73	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:4,144:0.97:148
chrX	31224684	rs2293668	A	G	5170.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chrX	31224881	rs2293667	G	A	2848.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chrX	31496350	rs1800280	C	T	5906.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chrX	31676096	rs2270672	G	A	1890.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chrX	31837916	rs17341004	A	G	363.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chrX	31854782	rs1379871	G	C	5735.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chrX	31893307	rs1800275	T	G	1783.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:2,63:0.97:65
chrX	32053662	rs2222852	G	C	4027.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:1,146:0.99:147
chrX	32305879	.	AAT	A	50.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.654;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.88;ReadPosRankSum=-0.594;SOR=0.360;set=HC	GT:AD:AF:DP	0/1:22,5:0.19:27
chrX	32472763	rs5902031	C	CT	261.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.627;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=5.547;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.38;ReadPosRankSum=0.192;SOR=2.560;set=HC	GT:AD:AF:DP	0/1:22,19:0.46:41
chrX	32503194	rs228406	T	C	5225.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chrX	32563488	rs115571	A	C	897.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:2,36:0.95:38
chrX	34149267	rs1811716	C	A	13988.77	.	AC=2;AF=1.00;AN=2;DB;DP=517;set=Intersection	GT:AD:AF:DP	1/1:0,504:1.00:504
chrX	34674970	rs5928617	C	G	2593.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chrX	37655143	rs368345014	ATG	A	55.73	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:7,5:0.42:12
chrX	37700014	rs5918401	C	A	300.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.846;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.06;ReadPosRankSum=2.280;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:2,10:0.83:12
chrX	37700044	rs5963345	T	C	300.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:2,10:0.83:12
chrX	38037479	rs5918489	A	T	1266.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chrX	38079975	rs72249350	CGCAGCA	CGCA,C	7376.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=223;set=Intersection	GT:AF:DP	1/1:0.99:170
chrX	38157522	rs10719444	CA	C	94.92	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.140;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=10.55;ReadPosRankSum=0.967;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:1,8:0.89:9
chrX	38158290	rs1801686	C	T	4325.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chrX	38169777	rs35587043	T	TA	2600.73	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:2,104:0.98:106
chrX	38178019	rs3810692	G	A	2821.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:1,102:0.99:103
chrX	38226427	.	C	CA	58.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.067;ClippingRankSum=0.000;DP=42;ExcessHet=3.0103;FS=3.876;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.43;ReadPosRankSum=-0.866;SOR=0.202;set=HC	GT:AD:AF:DP	0/1:29,12:0.29:41
chrX	38262808	rs2235125	G	A	1678.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chrX	38271377	rs3215429	A	AT	895.73	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:1,39:0.97:40
chrX	39932907	rs6520618	T	C	7321.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chrX	39933339	rs5917933	A	G	9017.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	1/1:0,344:1.00:344
chrX	39934488	rs6610384	C	T	3301.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chrX	40450585	rs9014	C	G	601.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chrX	40456961	rs3112299	G	C	2468.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chrX	40460183	rs10590549	T	TAA	161.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=16.17;ReadPosRankSum=-0.196;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:2,8:0.80:10
chrX	40499376	rs144758516	C	T	335.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;MQ=60.77;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chrX	40551599	rs61364519	TAA	T,TA	1473.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.146;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=6.398;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.15;MQRankSum=0.548;QD=13.77;ReadPosRankSum=0.108;SOR=2.060;set=HC	GT:AD:AF:DP	1/2:11,41,55:0.38,0.51:107
chrX	40552243	rs7052408	T	C	675.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chrX	40556492	rs5918029	C	G	961.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chrX	40571413	rs4827226	T	C	3421.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chrX	40573157	rs6520683	G	A	1980.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chrX	41002844	rs5918122	T	C	413.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chrX	41010474	rs11298138	CT	C	118.77	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chrX	41012486	rs55649554	TAA	T	574.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chrX	41043236	.	C	CT	5647.73	.	AC=2;AF=1.00;AN=2;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chrX	41055311	rs6520734	G	C	767.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chrX	41056845	rs201157305	TATC	T	412.74	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chrX	41091941	rs10463	A	G	1053.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chrX	41198456	rs2275943	T	C	1382.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chrX	41203119	rs2275944	G	A	3363.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chrX	41524788	rs200400188	AATCCAAATAAAAAGTT	A	2480.73	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chrX	41554814	rs913602	T	C	3342.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chrX	41587218	rs1023065	T	C	2564.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chrX	43552773	rs41303697	A	G	1165.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chrX	43591036	rs6323	G	T	6516.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:2,254:0.99:256
chrX	43595428	rs2235186	A	G	4300.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chrX	43599897	rs5902324	AT	A	61.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.399;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.83;ReadPosRankSum=1.420;SOR=0.556;set=HC	GT:AD:AF:DP	0/1:55,19:0.26:74
chrX	43601142	rs979606	C	T	1693.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chrX	43601363	rs979605	A	G	5557.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chrX	43603391	rs1137070	T	C	2491.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chrX	43741616	rs1181251	G	C	5274.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chrX	44202890	rs5902346	G	GC	6292.73	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chrX	44935924	rs10605935	CT	C	729.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.037;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=14.59;ReadPosRankSum=0.022;SOR=0.396;set=HC	GT:AD:AF:DP	1/1:3,47:0.94:50
chrX	45011340	rs4824527	T	C	1233.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:2,47:0.96:49
chrX	45606327	.	T	TGTGA	49.50	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.431;ClippingRankSum=-0.000;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.81;MQRankSum=0.431;QD=16.50;ReadPosRankSum=-0.000;SOR=0.223;set=HC	GT:AD:AF:DP	1/1:1,2:0.67:3
chrX	46321944	rs201896269	CAA	C,CA	1083.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.996;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.95;MQRankSum=0.025;QD=12.60;ReadPosRankSum=0.912;SOR=0.871;set=HC	GT:AD:AF:DP	1/2:12,23,51:0.27,0.59:86
chrX	46360317	rs201621696	T	C	1352.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.999;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=3.575;MLEAC=2;MLEAF=1.000;MQ=39.84;MQRankSum=0.000;QD=32.99;ReadPosRankSum=1.367;SOR=0.707;set=HC	GT:AD:AF:DP	1/1:1,40:0.98:41
chrX	46466760	rs2072840	C	T	844.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chrX	46472666	rs6611276	C	T	448.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chrX	46472826	rs3208940	G	A	1257.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chrX	46513260	rs370041978	CT	C	69.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.047;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=2.967;QD=0.73;ReadPosRankSum=1.176;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:73,22:0.23:95
chrX	46618321	rs1056846	C	G	3053.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:2,117:0.98:119
chrX	46737138	rs58164919	G	GGT	173.76	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:2,8:0.80:10
chrX	46884050	rs5952987	G	A	758.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chrX	46893249	rs5906311	G	A	973.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chrX	46944155	rs6611328	A	C	585.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chrX	46949403	rs6611330	C	T	3090.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chrX	46951004	rs5906327	G	T	688.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chrX	46952219	rs4480242	A	G	581.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chrX	47030560	.	GGGA	G	142.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.180;ClippingRankSum=0.000;DP=119;ExcessHet=3.0103;FS=1.312;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.59;ReadPosRankSum=0.211;SOR=0.462;set=HC	GT:AD:AF:DP	0/1:80,10:0.11:90
chrX	47036113	rs375726080	GTC	G	63.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.248;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.90;ReadPosRankSum=-0.039;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:17,5:0.23:22
chrX	47057647	rs4468050	A	G	2298.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chrX	47061018	rs4239964	C	G	3215.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chrX	47086347	rs6417923	G	A	5616.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chrX	47104943	.	C	CT	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.315;ClippingRankSum=0.000;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.02;ReadPosRankSum=0.792;SOR=0.621;set=HC	GT:AD:AF:DP	0/1:29,9:0.24:38
chrX	47107350	.	GA	G	439.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.298;ClippingRankSum=0.000;DP=165;ExcessHet=3.0103;FS=1.830;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.825;QD=3.36;ReadPosRankSum=-0.906;SOR=0.904;set=HC	GT:AD:AF:DP	0/1:77,54:0.41:131
chrX	47343254	rs2071778	C	T	5345.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:2,196:0.99:198
chrX	47372903	rs3748520	A	C	105.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.37;QD=21.18;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chrX	47430509	rs34987183	AGT	A	387.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.562;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=15.631;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.91;ReadPosRankSum=-2.334;SOR=2.559;set=HC	GT:AD:AF:DP	0/1:29,20:0.41:49
chrX	47430611	rs377351122	GGT	G	611.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.346;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=2.073;QD=6.87;ReadPosRankSum=-0.114;SOR=0.792;set=HC	GT:AD:AF:DP	0/1:52,37:0.42:89
chrX	47442048	rs55990337	C	A	7520.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chrX	47444879	rs5953060	G	C	5711.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chrX	47444985	rs4898	T	C	6635.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chrX	47445286	rs6609533	A	G	12828.77	.	AC=2;AF=1.00;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	1/1:0,469:1.00:469
chrX	47466361	rs1142636	A	G	3036.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chrX	47483800	rs1048118	G	A	7933.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:1,303:1.00:304
chrX	47483925	rs2235182	A	G	1134.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chrX	47486486	rs909523	C	A	3084.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chrX	47487912	rs11436787	T	TG	7130.73	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chrX	47487916	rs8177072	T	A	7221.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chrX	47518799	rs67041327	TG	T	2180.73	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chrX	47519504	rs61032756	C	CCCTTCCTTCCTT	2690.73	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chrX	47755110	rs11796175	C	T	232.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chrX	47755164	rs3949810	C	A	1281.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chrX	47757758	rs5906510	T	G	3747.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chrX	47920356	rs727079	A	G	8251.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chrX	47927554	rs199852662	AGAAG	A	424.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.34;QD=38.61;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chrX	47976402	rs73207862	C	T	3288.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chrX	48049666	rs5906557	C	T	3656.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chrX	48053521	rs4239967	T	C	8778.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,318:1.00:318
chrX	48054294	.	G	GA	199.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.244;ClippingRankSum=0.000;DP=325;ExcessHet=3.0103;FS=1.946;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=2.143;QD=0.67;ReadPosRankSum=1.957;SOR=0.857;set=HC	GT:AD:AF:DP	0/1:248,49:0.16:297
chrX	48054740	rs4824675	C	G	9395.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:0,337:1.00:337
chrX	48073924	rs4593689	T	C	3425.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chrX	48158947	rs41310647	T	C	6455.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:2,227:0.99:229
chrX	48163105	rs4598385	A	G	16264.77	.	AC=2;AF=1.00;AN=2;DB;DP=623;set=Intersection	GT:AD:AF:DP	1/1:0,617:1.00:617
chrX	48163717	rs3901052	C	T	8432.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chrX	48163886	rs3885827	G	A	5042.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chrX	48164138	rs5906631	A	G	2973.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chrX	48320301	rs2293952	C	G	3599.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chrX	48326216	rs2293953	A	G	11874.77	.	AC=2;AF=1.00;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	1/1:0,436:1.00:436
chrX	48339985	rs2070991	C	T	11310.77	.	AC=2;AF=1.00;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	1/1:3,412:0.99:415
chrX	48378985	.	AACAC	A	537.73	.	AC=2;AF=1.00;AN=2;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.57;QD=41.36;SOR=3.767;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chrX	48382099	.	CTT	C	172.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.943;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=4.316;MLEAC=1;MLEAF=0.500;MQ=60.57;MQRankSum=1.765;QD=4.94;ReadPosRankSum=-0.989;SOR=1.721;set=HC	GT:AD:AF:DP	0/1:23,12:0.34:35
chrX	48432791	rs2661105	T	C	1230.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chrX	48433499	rs2249583	C	G	6841.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chrX	48433529	rs2249585	C	T	9055.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:0,340:1.00:340
chrX	48435308	rs235830	G	A	1425.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chrX	48435928	rs235829	C	T	2140.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chrX	48460314	rs235842	A	G	7132.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chrX	48460625	rs235841	G	C	3401.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:1,129:0.99:130
chrX	48544650	rs235423	A	G	458.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chrX	48623981	.	CAAA	C	103.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.740;ClippingRankSum=0.000;DP=94;ExcessHet=3.0103;FS=1.199;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=-0.387;QD=1.19;ReadPosRankSum=-1.028;SOR=0.994;set=HC	GT:AD:AF:DP	0/1:74,13:0.15:87
chrX	48624001	.	A	G	3287.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.522;ClippingRankSum=0.000;DP=168;ExcessHet=3.0103;FS=2.886;MLEAC=2;MLEAF=1.000;MQ=60.06;MQRankSum=0.169;QD=20.55;ReadPosRankSum=-0.061;SOR=0.203;set=HC	GT:AD:AF:DP	1/1:2,158:0.99:160
chrX	48649426	rs139472040	A	AG	1447.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=49.92;SOR=5.353;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chrX	48649449	rs62600348	T	G	2104.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.76;SOR=3.564;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chrX	48649456	rs66717003	T	G	2253.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.74;SOR=2.876;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chrX	48672788	rs2075840	G	A	3670.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chrX	48676839	rs2075837	G	A	6099.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:2,221:0.99:223
chrX	48690416	rs6520383	G	T	576.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chrX	48694045	.	G	GC	33.93	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.150;ClippingRankSum=-0.000;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.48;ReadPosRankSum=-1.150;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chrX	48694053	.	T	C	42.96	.	AC=1;AF=0.500;AN=2;DP=4;set=Intersection	GT:AD:AF:DP	0/1:1,2:0.67:3
chrX	48751471	rs1128363	A	G	5692.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chrX	48759204	rs741932	C	T	4206.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chrX	48760793	rs2239453	C	T	5848.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chrX	48838151	rs3027476	C	T	7329.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:2,284:0.99:286
chrX	48858802	rs28727466	G	A	2813.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chrX	48898183	rs7056903	C	G	978.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chrX	48900900	rs4824738	T	G	2444.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chrX	49021256	rs5906744	A	G	8924.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:0,337:1.00:337
chrX	49021537	rs5905720	G	C	8832.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	1/1:0,330:1.00:330
chrX	49022276	rs5953269	C	G	3121.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.24;SOR=2.406;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chrX	49022286	rs72619037	C	G	3706.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.76;SOR=2.642;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chrX	49022291	.	GT	G	4183.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chrX	49022293	rs75416104	C	G	4223.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.93;SOR=2.758;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chrX	49022293	.	CAA	GAG	2592	.	AC=2;AF=1.00;AN=2;BRF=0.41;FR=1.0000;HP=2;HapScore=1;MGOF=1;MMLQ=28;MQ=60.0;NF=44;NR=15;PP=2592;QD=20;SC=GAACGCCTGTCAAGGGAGATT;SbPval=0.61;Source=Platypus;TC=86;TCF=63;TCR=23;TR=59;WE=49022319;WS=49022266;set=Platypus	GT:AD:AF:DP	1/1:27,59:0.69:86
chrX	49022295	rs138365388	A	G	4178.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.45;SOR=2.858;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chrX	49022309	rs73634213	C	A	5862.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.75;SOR=1.574;set=HC	GT:AD:AF:DP	1/1:0,131:1.00:131
chrX	49022309	.	CAA	AAG	2947	.	AC=2;AF=1.00;AN=2;BRF=0.41;FR=1.0000;HP=2;HapScore=1;MGOF=1;MMLQ=27;MQ=60.0;NF=72;NR=32;PP=2947;QD=20;SC=AGATTTCTCTCAAGGTCAGGG;SbPval=0.67;Source=Platypus;TC=117;TCF=78;TCR=39;TR=104;WE=49022319;WS=49022266;set=Platypus	GT:AD:AF:DP	1/1:13,104:0.89:117
chrX	49022311	rs7880193	A	G	5887.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.94;SOR=1.574;set=HC	GT:AD:AF:DP	1/1:0,134:1.00:134
chrX	49022700	rs4824462	T	C	1347.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chrX	49032208	rs12557970	G	A	5595.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:1,207:1.00:208
chrX	49056490	.	C	T	2509.77	.	AC=2;AF=1.00;AN=2;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.14;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chrX	49056498	rs111279175	G	C	2567.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.50;SOR=1.078;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chrX	49069366	rs2071316	C	T	2236.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chrX	49070813	rs2071317	G	A	1271.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chrX	49071964	rs2075866	A	G	2977.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chrX	49077583	rs2869212	G	A	3212.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chrX	49081291	rs2235127	G	A	6684.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:1,251:1.00:252
chrX	49084492	rs6609854	C	T	6622.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chrX	49087487	rs5905724	G	A	2461.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:1,96:0.99:97
chrX	49092311	.	ACACACACG	A	174.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.577;ClippingRankSum=0.000;DP=23;ExcessHet=3.0103;FS=4.931;MLEAC=1;MLEAF=0.500;MQ=62.76;MQRankSum=1.718;QD=9.71;ReadPosRankSum=1.734;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:8,10:0.56:18
chrX	49093528	rs2294016	T	C	7552.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chrX	49098631	rs2294018	A	G	4702.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.999;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.87;ReadPosRankSum=1.304;SOR=1.083;set=HC	GT:AD:AF:DP	1/1:2,173:0.99:175
chrX	49103097	rs2294019	T	A	327.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chrX	49103224	rs2294020	G	A	2315.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chrX	49126656	rs111505885	C	T	3139.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chrX	49370511	rs35846904	A	AAAT	442.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.523;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.60;ReadPosRankSum=-0.691;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:5,13:0.72:18
chrX	49458667	.	A	ACACACACC	676.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.068;ClippingRankSum=-0.000;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=67.39;MQRankSum=0.566;QD=25.06;ReadPosRankSum=0.366;SOR=0.527;set=HC	GT:AD:AF:DP	1/1:3,24:0.89:27
chrX	49767832	rs456615	A	G	2818.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.74;SOR=1.010;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chrX	49767835	rs456617	A	G	2818.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.74;SOR=1.010;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chrX	49767904	rs149259	A	G	1234.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chrX	49845141	.	G	GT	62.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.353;ClippingRankSum=0.000;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.49;ReadPosRankSum=2.042;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:11,7:0.39:18
chrX	50054570	.	G	GT	134.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.699;ClippingRankSum=0.000;DP=78;ExcessHet=3.0103;FS=10.186;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=1.476;QD=2.41;ReadPosRankSum=0.459;SOR=0.067;set=HC	GT:AD:AF:DP	0/1:39,17:0.30:56
chrX	50121146	rs11415594	A	AG	2738.73	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chrX	50165595	rs72026364	AAC	A	204.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.538;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=1.171;QD=8.53;ReadPosRankSum=-0.581;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:13,11:0.46:24
chrX	50341598	rs2295544	G	A	3774.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chrX	50341675	rs2295543	G	C	1073.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chrX	50648880	.	C	CA	112.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.781;ClippingRankSum=0.000;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.15;ReadPosRankSum=-0.766;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:74,24:0.24:98
chrX	51239295	.	ATCCTCGAGGCAGCC	A	6256.73	.	AC=2;AF=1.00;AN=2;DP=287;set=Intersection	GT:AD:AF:DP	1/1:6,239:0.98:245
chrX	51637471	rs12837412	C	T	4573.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.925;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.59;ReadPosRankSum=-1.427;SOR=1.106;set=HC	GT:AD:AF:DP	1/1:2,170:0.99:172
chrX	51637551	rs12835969	G	A	2448.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chrX	51641607	rs35559927	C	T	1573.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chrX	51645065	rs35860208	G	C	256.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chrX	52825471	rs2806837	A	G	3094.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:1,116:0.99:117
chrX	52825546	rs2806838	C	G	5603.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:1,213:1.00:214
chrX	52891492	rs114794367	T	C	357.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:17,14:0.45:31
chrX	52891512	rs78471253	A	T	577.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.184;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.05;ReadPosRankSum=0.399;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:20,16:0.44:36
chrX	52891513	rs114568211	C	T	571.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.325;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.45;ReadPosRankSum=0.630;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:21,16:0.43:37
chrX	52891523	rs75536354	G	T	568.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.722;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.22;ReadPosRankSum=1.202;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:25,15:0.38:40
chrX	52891542	rs78672295	A	G	428.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:29,14:0.33:43
chrX	52891565	rs79831867	A	G	519.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:47,17:0.27:64
chrX	52891584	rs5943751	C	A	674.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:68,26:0.28:94
chrX	52891619	.	GT	G	1481.73	.	AC=1;AF=0.500;AN=2;DP=153;set=Intersection	GT:AD:AF:DP	0/1:109,44:0.29:153
chrX	52891645	rs75808475	A	G	1716.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.768;ClippingRankSum=0.000;DB;DP=198;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.71;ReadPosRankSum=0.395;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:146,51:0.26:197
chrX	52891653	rs73206488	C	T	1692.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.583;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=1.232;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.98;ReadPosRankSum=0.631;SOR=0.567;set=HC	GT:AD:AF:DP	0/1:157,55:0.26:212
chrX	52891732	rs201414570	G	A	2009.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.116;ClippingRankSum=0.000;DB;DP=219;ExcessHet=3.0103;FS=2.637;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.26;ReadPosRankSum=0.396;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:156,61:0.28:217
chrX	52891736	rs75971120	G	T	2010.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.535;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=1.905;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.53;ReadPosRankSum=0.935;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:153,58:0.27:211
chrX	52891738	rs79449844	CA	TG	1985.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.057;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=1.928;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.59;ReadPosRankSum=0.747;SOR=0.870;set=HC	GT:AD:AF:DP	0/1:149,58:0.28:207
chrX	52891818	rs73488230	G	A	564.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:47,30:0.39:77
chrX	52891832	rs66491662	CT	C	491.73	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:36,20:0.36:56
chrX	52895579	.	GGTGT	G,GGT	1251.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=67;set=Intersection	GT:AF:DP	1/2:0.16,0.76:49
chrX	53111758	.	CCCG	C	316.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.500;ClippingRankSum=0.000;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.71;ReadPosRankSum=0.416;SOR=0.601;set=HC	GT:AD:AF:DP	0/1:101,16:0.14:117
chrX	53222043	rs146836963	A	AC	109.87	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chrX	53225751	rs1536247	A	G	1308.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chrX	53228148	rs1977364	C	A	9475.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:0,336:1.00:336
chrX	53265053	.	AC	A	92.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.273;ClippingRankSum=0.000;DP=77;ExcessHet=3.0103;FS=1.178;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.22;ReadPosRankSum=0.265;SOR=0.518;set=HC	GT:AD:AF:DP	0/1:64,12:0.16:76
chrX	53265835	rs2296541	T	C	1134.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chrX	53271147	rs2274307	T	G	1519.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chrX	53280421	rs7886988	G	A	1495.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chrX	53449336	rs11462431	A	AG	740.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chrX	53563589	rs426298	A	G	1761.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chrX	53607754	rs266786	A	C	1458.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chrX	53622078	rs1244413	T	A	701.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chrX	53629649	.	AAT	A	224.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.218;ClippingRankSum=0.000;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=0.000;QD=2.32;ReadPosRankSum=0.268;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:82,15:0.15:97
chrX	53652852	.	T	TGCCGGG	2097.73	.	AC=2;AF=1.00;AN=2;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chrX	53654500	rs370583659	GTA	G	234.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.269;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=2.567;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=2.122;QD=2.70;ReadPosRankSum=0.109;SOR=0.389;set=HC	GT:AD:AF:DP	0/1:71,16:0.18:87
chrX	53655415	.	TA	T	200.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.872;ClippingRankSum=0.000;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=1.826;QD=2.61;ReadPosRankSum=0.871;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:47,30:0.39:77
chrX	54107692	rs2516098	T	C	9716.77	.	AC=2;AF=1.00;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	1/1:0,353:1.00:353
chrX	54117740	rs2495797	C	A	2264.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chrX	54161859	rs4826523	C	T	1247.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chrX	54209387	rs2495783	A	G	2440.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chrX	54321333	.	C	CT	162.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.132;ClippingRankSum=0.000;DP=81;ExcessHet=3.0103;FS=1.370;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.276;QD=3.32;ReadPosRankSum=0.622;SOR=1.063;set=HC	GT:AD:AF:DP	0/1:33,16:0.33:49
chrX	54483071	.	G	GT	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.571;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=7.936;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.19;ReadPosRankSum=-0.308;SOR=2.613;set=HC	GT:AD:AF:DP	0/1:28,7:0.20:35
chrX	54585146	.	G	GT	100.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.013;ClippingRankSum=0.000;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.14;ReadPosRankSum=1.404;SOR=0.871;set=HC	GT:AD:AF:DP	0/1:35,12:0.26:47
chrX	54784246	rs41306886	G	A	4398.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chrX	54817412	.	C	T	8119.77	.	AC=2;AF=1.00;AN=2;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chrX	54953647	rs2273138	G	A	1317.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chrX	54972154	.	CGT	C	50.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.218;ClippingRankSum=0.000;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.98;ReadPosRankSum=-0.668;SOR=0.184;set=HC	GT:AD:AF:DP	0/1:13,4:0.24:17
chrX	55028951	rs28382680	A	G	606.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chrX	55116466	rs1845444	C	G	2231.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chrX	55173732	rs11327722	TA	T	11266.73	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chrX	55246965	rs5914272	C	T	1720.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chrX	55247030	rs5914273	C	G	2897.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chrX	55248320	rs5914274	G	A	10982.77	.	AC=2;AF=1.00;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	1/1:0,419:1.00:419
chrX	55286887	rs3761559	G	T	2049.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chrX	55287031	rs3761560	T	G	13264.77	.	AC=2;AF=1.00;AN=2;DB;DP=510;set=Intersection	GT:AD:AF:DP	1/1:0,507:1.00:507
chrX	55289593	rs2148981	C	T	2741.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chrX	55289774	rs4826381	T	C	3477.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chrX	55479299	rs11545211	G	A	5305.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chrX	55651001	rs2375465	T	C	3730.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chrX	55748820	rs1473761	A	G	761.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chrX	55757744	rs5960480	T	G	1115.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:2,36:0.95:38
chrX	56295438	rs59394346	AAC	A	506.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.117;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=0.822;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.54;ReadPosRankSum=-1.737;SOR=0.858;set=HC	GT:AD:AF:DP	0/1:113,30:0.21:143
chrX	56295958	rs200952140	ATG	A	241.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.042;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.84;ReadPosRankSum=-2.063;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:46,17:0.27:63
chrX	57313357	rs2516023	T	C	1625.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chrX	57318907	rs4030473	T	A	2700.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:2,99:0.98:101
chrX	57405163	rs4826543	T	C	4409.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chrX	57474943	rs1821118	A	T	1523.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chrX	57475253	rs7059676	A	C	1876.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chrX	57515140	rs5915052	T	G	2643.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chrX	57618845	rs199513692	G	A	323.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.239;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.57;MQRankSum=-2.286;QD=8.09;ReadPosRankSum=0.889;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:29,11:0.28:40
chrX	57618849	rs200267267	A	C	332.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.344;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.55;MQRankSum=-2.205;QD=8.76;ReadPosRankSum=1.222;SOR=0.822;set=HC	GT:AD:AF:DP	0/1:27,11:0.29:38
chrX	57618870	rs189164178	G	A	446.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:25,15:0.38:40
chrX	57619648	rs1057328	G	T	9699.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	1/1:0,346:1.00:346
chrX	65382685	rs5919015	T	C	1766.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chrX	65390966	rs5965106	C	A	994.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chrX	65392181	rs5964495	T	C	1780.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chrX	65393658	rs5918591	A	G	4922.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chrX	65408445	rs6624875	C	T	1352.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chrX	65415174	rs2206203	T	G	2211.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chrX	65420609	rs1264215	A	G	1374.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chrX	65427040	rs806607	T	C	1438.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chrX	65427124	rs809363	A	G	1890.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chrX	65486260	.	A	AT	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.320;ClippingRankSum=0.000;DP=261;ExcessHet=3.0103;FS=1.545;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.15;ReadPosRankSum=-1.313;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:203,38:0.16:241
chrX	65819223	rs4827499	A	G	617.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chrX	65819286	rs11379040	G	GT	1912.73	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chrX	65822607	rs1385698	T	C	2402.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chrX	65824986	rs1385699	C	T	4279.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chrX	66765158	.	T	TGCAGCA,TGCA	2182.73	.	AC=2,0;AF=1.00,0.00;AN=2;DP=86;set=Intersection	GT:AF:DP	1/1:1.00:47
chrX	66766356	.	TGGC	T	69.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.212;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=7.465;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.91;ReadPosRankSum=1.529;SOR=0.048;set=HC	GT:AD:AF:DP	0/1:19,5:0.21:24
chrX	66941597	rs1337076	T	G	1055.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chrX	67331930	.	CAGAG	C,CAG	1372.73	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=44.28;SOR=1.214;set=HC	GT:AD:AF:DP	1/2:0,10,21:0.32,0.68:31
chrX	67331934	rs5918812	G	C	545.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:10,21:0.68:31
chrX	67412906	rs1191948	G	A	5024.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chrX	67429834	rs57516402	CT	C	839.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.054;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=0.565;QD=11.66;ReadPosRankSum=-0.146;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:12,60:0.83:72
chrX	67431814	rs2225124	A	G	1289.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chrX	67719085	rs12843249	G	T	1651.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chrX	68060503	rs2230423	C	T	3599.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chrX	68066220	rs73218774	G	C	801.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chrX	68381912	rs3761646	G	A	8515.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:4,322:0.99:326
chrX	68725178	rs374286243	TCTG	T	285.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.615;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=0.988;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.01;ReadPosRankSum=-0.668;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:125,17:0.12:142
chrX	68749379	rs35383499	G	A	2859.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chrX	68837767	rs370312004	TA	T	55.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.031;ClippingRankSum=-0.000;DB;DP=21;ExcessHet=3.0103;FS=10.843;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.28;ReadPosRankSum=0.660;SOR=0.022;set=HC	GT:AD:AF:DP	0/1:9,8:0.47:17
chrX	69080840	rs1203003	G	A	3675.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chrX	69250308	rs2296765	C	T	2572.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chrX	69263514	rs61735680	T	C	799.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chrX	69368853	rs650028	T	C	2412.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chrX	69459945	rs1152194	C	T	2513.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chrX	69496228	rs1572732	T	C	1558.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chrX	69502054	rs5936549	A	G	1753.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chrX	69502479	rs1626469	A	G	4917.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chrX	69504073	rs2275412	T	C	2428.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.19;QD=42.61;SOR=1.140;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chrX	69504078	rs12556489	T	G	589.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.157;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=1.139;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=0.641;QD=9.83;ReadPosRankSum=0.443;SOR=0.454;set=HC	GT:AD:AF:DP	0/1:16,44:0.73:60
chrX	69507342	.	TTTTG	T	43.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.290;ClippingRankSum=0.000;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.43;ReadPosRankSum=0.828;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:15,3:0.17:18
chrX	69510335	rs1199470	C	T	1024.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chrX	69572242	rs1199428	G	A	207.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chrX	69635457	.	C	CAA	149.73	.	AC=1;AF=0.500;AN=2;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.22;QD=11.52;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:2,11:0.85:13
chrX	69639698	rs1886892	G	T	4057.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chrX	69652762	rs2296542	A	G	4291.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chrX	69749852	rs1536250	AT	GA	2973.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chrX	69774517	rs4844240	A	T	4767.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:1,181:0.99:182
chrX	69844797	rs1325094	G	A	1645.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:1,63:0.98:64
chrX	69964084	rs5902674	G	GA	420.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.736;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.41;MQRankSum=0.000;QD=14.02;ReadPosRankSum=-0.295;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:7,23:0.77:30
chrX	69964091	.	A	AAAT	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.310;ClippingRankSum=0.000;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.45;MQRankSum=0.000;QD=1.35;ReadPosRankSum=-0.676;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:25,6:0.19:31
chrX	70073098	rs147088100	G	A	3823.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chrX	70073159	rs6525433	T	C	2117.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chrX	70146398	rs4360450	A	G	2152.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chrX	70146475	rs6525447	G	C	1391.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chrX	70149360	rs5936606	G	A	1914.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.35;SOR=0.902;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chrX	70282696	rs34211894	A	G	2805.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chrX	70320927	.	G	A	6588.77	.	AC=2;AF=1.00;AN=2;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chrX	70321631	rs5980742	T	G	6142.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chrX	70330596	rs11574625	T	C	2067.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chrX	70345593	rs2075790	C	T	8145.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:0,323:1.00:323
chrX	70348317	rs5030617	G	C	2671.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chrX	70351838	rs6525471	C	T	4536.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:2,162:0.99:164
chrX	70352617	.	CCTCTTCTCTTCTCTTCTCTTCTCTT	C	1576.73	.	AC=2;AF=1.00;AN=2;ClippingRankSum=0.000;DP=48;ExcessHet=3.0103;FS=4.150;MLEAC=2;MLEAF=1.000;MQ=62.87;MQRankSum=0.761;QD=40.43;SOR=1.108;set=HC	GT:AD:AF:DP	1/1:1,38:0.97:39
chrX	70356704	rs41298482	C	T	3083.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:1,105:0.99:106
chrX	70361273	rs7051453	C	T	4703.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chrX	70361608	rs7056408	T	C	291.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chrX	70373216	rs2233440	C	T	2798.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chrX	70469182	rs2341539	G	A	5787.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chrX	70613074	rs201372159	TTG	T	165.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.056;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.74;MQRankSum=0.000;QD=2.37;ReadPosRankSum=0.493;SOR=0.838;set=HC	GT:AD:AF:DP	0/1:53,17:0.24:70
chrX	70617443	rs5980760	A	G	1093.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chrX	70626766	.	A	AT	152.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.669;ClippingRankSum=0.000;DP=87;ExcessHet=3.0103;FS=5.764;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.329;QD=2.94;ReadPosRankSum=0.824;SOR=0.172;set=HC	GT:AD:AF:DP	0/1:35,17:0.33:52
chrX	70774984	.	TTG	T	310.73	.	AC=2;AF=1.00;AN=2;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.28;QD=22.20;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chrX	71349753	rs12397326	G	A	7670.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chrX	71349774	rs12393722	T	C	9592.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chrX	71351443	rs62614085	A	G	1794.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chrX	71352187	rs7471996	C	G	712.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chrX	71357093	rs6625949	G	A	3100.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chrX	71357160	rs6625950	G	T	1238.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chrX	71363313	rs140433115	A	C	3768.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:2,140:0.99:142
chrX	71363415	rs6624597	C	T	4239.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chrX	71364479	rs11094247	A	C	4353.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chrX	71379702	rs7884806	T	C	6131.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chrX	71379853	rs7880917	C	T	4119.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chrX	71380152	rs7881332	C	T	2042.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chrX	71401607	rs6525589	G	A	860.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.04;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chrX	71401614	rs7058353	C	A	950.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.34;SOR=2.030;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chrX	71493691	rs7580	C	T	7382.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chrX	71495344	rs3827426	C	T	6226.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chrX	71495388	rs34563981	T	TCTA	12492.73	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chrX	71495869	rs3747303	A	G	1494.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chrX	71518799	rs5958780	G	T	5561.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chrX	71521867	rs3012627	G	C	4688.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chrX	71549512	rs660392	G	C	4174.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chrX	71791975	rs3830710	TA	T	233.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.989;ClippingRankSum=0.000;DB;DP=217;ExcessHet=3.0103;FS=0.752;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.43;ReadPosRankSum=-0.524;SOR=0.834;set=HC	GT:AD:AF:DP	0/1:123,41:0.25:164
chrX	71813191	rs200569284	C	CT	654.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.522;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=0.000;QD=10.39;ReadPosRankSum=-0.646;SOR=0.600;set=HC	GT:AD:AF:DP	0/1:20,43:0.68:63
chrX	71819570	rs376497544	AT	A	1790.73	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:3,89:0.97:92
chrX	71896110	.	CAT	C	103	.	AC=1;AF=0.500;AN=2;BRF=0.39;FR=0.5000;HP=1;HapScore=2;MGOF=2;MMLQ=27;MQ=60.0;NF=0;NR=4;PP=103;QD=28.0;SC=ACTAATTTGCCATATATATAT;SbPval=1.0;Source=Platypus;TC=15;TCF=2;TCR=13;TR=4;WE=71896119;WS=71896100;set=Platypus	GT:AD:AF:DP	1/0:11,4:0.27:15
chrX	71933512	.	TCACA	T,TCA	4191.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.824;ClippingRankSum=0.000;DP=264;ExcessHet=3.0103;FS=1.749;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=20.96;ReadPosRankSum=1.808;SOR=0.503;set=HC	GT:AD:AF:DP	1/2:26,47,127:0.23,0.64:200
chrX	72223371	.	A	G	791.77	.	AC=2;AF=1.00;AN=2;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chrX	72434377	rs147927434	G	A	3476.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chrX	73042316	rs16992436	T	C	4461.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chrX	73042607	rs41306111	C	T	3412.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:2,128:0.98:130
chrX	73043144	rs375977945	CT	C	641.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.733;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=0.537;QD=12.83;ReadPosRankSum=0.780;SOR=0.631;set=HC	GT:AD:AF:DP	1/1:5,45:0.90:50
chrX	73043817	rs1620574	T	C	4119.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chrX	73044970	rs41303715	T	A	7063.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:3,263:0.99:266
chrX	73046557	rs16992443	G	T	3353.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:2,123:0.98:125
chrX	73062694	rs41310673	A	T	3913.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chrX	73064935	rs45483698	C	T	4001.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chrX	73066891	rs6527	C	A	4668.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chrX	73071141	rs41305409	C	G	7975.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chrX	73749319	rs5937843	T	G	1122.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chrX	74332585	rs4148838	G	GT	588.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:3,31:0.91:34
chrX	74375871	rs1039123	G	C	3602.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chrX	74376420	rs5981325	C	T	3225.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chrX	74494469	.	GT	AG	14307.77	.	AC=2;AF=1.00;AN=2;DP=325;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chrX	74494483	rs5981831	A	G	8007.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chrX	74511202	rs5981834	G	C	1109.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chrX	74523367	rs972561	A	G	558.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chrX	74598903	rs5937369	G	A	2056.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chrX	74725731	rs375928093	TGA	T	133.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.990;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=4.947;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.82;ReadPosRankSum=1.085;SOR=0.477;set=HC	GT:AD:AF:DP	0/1:145,19:0.12:164
chrX	74961968	rs5938183	G	A	2617.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chrX	74962013	.	C	T	2200.77	.	AC=2;AF=1.00;AN=2;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chrX	75395172	rs2301863	T	C	1739.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chrX	75395187	rs2301862	C	T	1973.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chrX	76139959	rs232961	C	T	431.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chrX	76936949	rs45577534	AAC	A	953.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chrX	77086467	.	TTTTTATTTTATTTTA	T	510.73	.	AC=2;AF=1.00;AN=2;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chrX	77296047	rs5913631	G	C	4993.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chrX	77298022	.	TC	T	1863.73	.	AC=2;AF=1.00;AN=2;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chrX	77298857	rs4826245	G	A	1366.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chrX	77528317	rs320995	G	A	6920.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:1,258:1.00:259
chrX	78426471	rs3810712	C	T	2902.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chrX	78426488	rs3810711	T	C	3538.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:1,129:0.99:130
chrX	78426988	rs3827440	T	C	7802.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chrX	78617053	rs1736662	A	G	843.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chrX	78617999	rs1751133	T	C	1156.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chrX	78618050	rs1751134	A	G	2538.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chrX	79698593	rs1113265	C	G	7053.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chrX	79937084	rs3122406	G	A	1352.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chrX	79937622	.	A	AT	68.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.824;ClippingRankSum=0.000;DP=66;ExcessHet=3.0103;FS=3.780;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.40;ReadPosRankSum=-0.050;SOR=0.230;set=HC	GT:AD:AF:DP	0/1:38,11:0.22:49
chrX	79942599	.	GTATATA	G,GTA	866.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=36;set=Intersection	GT:AF:DP	1/2:0.32,0.60:25
chrX	79943569	rs3122407	T	C	6411.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chrX	79999796	rs58601634	T	TCAC	1898.73	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chrX	80064910	rs200402115	A	AC	3509.73	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:3,122:0.98:125
chrX	82764040	rs5921978	A	G	10736.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.92;SOR=1.031;set=HC	GT:AD:AF:DP	1/1:0,239:1.00:239
chrX	82764040	.	AGG	GGC	2947	.	AC=2;AF=1.00;AN=2;BRF=0.42;FR=1.0000;HP=2;HapScore=1;MGOF=2;MMLQ=24;MQ=60.0;NF=94;NR=70;PP=2947;QD=20;SC=GCAGGTTCGAAGGCTTGCAGC;SbPval=0.46;Source=Platypus;TC=176;TCF=103;TCR=73;TR=164;WE=82764050;WS=82764030;set=Platypus	GT:AD:AF:DP	1/1:12,164:0.93:176
chrX	82764042	rs5921979	G	C	10786.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.03;SOR=0.977;set=HC	GT:AD:AF:DP	1/1:0,245:1.00:245
chrX	83119939	rs5922000	T	C	1930.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chrX	83124802	rs5968237	A	T	145.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chrX	83319457	.	T	TA	118.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.226;ClippingRankSum=0.000;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.60;ReadPosRankSum=0.019;SOR=0.519;set=HC	GT:AD:AF:DP	0/1:55,19:0.26:74
chrX	83352970	rs10521366	T	C	584.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chrX	83403178	rs1539517	G	C	1257.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chrX	83588660	rs5922965	A	G	115.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chrX	83591866	rs5922966	C	T	3608.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chrX	84258843	rs3747422	C	G	1840.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chrX	84309549	.	TATTG	T	75	.	AC=2;AF=1.00;AN=2;BRF=0.2;FR=0.9998;HP=2;HapScore=2;MGOF=25;MMLQ=28;MQ=63.51;NF=0;NR=2;PP=75;QD=51.0;SC=TTGATTAATTTATTGATTATT;SbPval=1.0;Source=Platypus;TC=2;TCF=0;TCR=2;TR=2;WE=84309560;WS=84309539;set=Platypus	GT:AD:AF:DP	1/1:0,2:1.00:2
chrX	84349807	rs4828124	G	A	443.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chrX	84349941	rs141349825	G	A	2728.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chrX	84350010	rs4828326	A	G	4043.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chrX	84350128	rs4828327	G	T	1613.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chrX	84358864	rs5922146	C	T	3434.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chrX	84363140	rs10126146	A	G	6506.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:1,247:1.00:248
chrX	84534383	rs2227090	A	C	2011.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.188;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=1.799;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=18.63;ReadPosRankSum=1.494;SOR=0.679;set=HC	GT:AD:AF:DP	1/1:5,103:0.95:108
chrX	84563135	rs363774	T	A	4560.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chrX	85090991	.	A	C	426.77	.	AC=2;AF=1.00;AN=2;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chrX	85282415	rs1015148	G	A	2358.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chrX	85994683	rs6623765	G	T	695.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chrX	86877348	rs2273050	G	T	4849.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chrX	86887244	rs222084	C	T	2119.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chrX	88008423	rs5940915	A	C	1992.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chrX	88008807	rs5984611	G	A	6100.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:1,226:1.00:227
chrX	88009322	rs5984613	A	G	1865.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chrX	91147703	rs35310035	A	AT	181.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.304;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=0.944;MLEAC=1;MLEAF=0.500;MQ=58.65;MQRankSum=-2.339;QD=1.68;ReadPosRankSum=-1.176;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:80,28:0.26:108
chrX	91518011	rs5903000	CA	C	132.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.638;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=2.769;MLEAC=1;MLEAF=0.500;MQ=60.63;MQRankSum=0.722;QD=8.30;ReadPosRankSum=-0.788;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:4,12:0.75:16
chrX	92927634	rs1045686	G	C	7581.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chrX	96171416	rs56682273	G	GT	219.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.389;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=1.922;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.79;ReadPosRankSum=2.540;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:7,18:0.72:25
chrX	96197175	rs5920973	G	A	1344.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chrX	99661969	rs1953337	G	A	12592.77	.	AC=2;AF=1.00;AN=2;DB;DP=480;set=Intersection	GT:AD:AF:DP	1/1:1,476:1.00:477
chrX	99919733	rs2022475	G	A	2062.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chrX	99930886	rs10623103	T	TAC	498.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.289;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=6.021;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=33.25;ReadPosRankSum=1.753;SOR=2.430;set=HC	GT:AD:AF:DP	1/1:1,14:0.93:15
chrX	99930892	rs4828041	T	C	590.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.203;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=5.740;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=36.92;ReadPosRankSum=1.745;SOR=2.225;set=HC	GT:AD:AF:DP	1/1:1,15:0.94:16
chrX	99936147	rs4828043	A	G	1280.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chrX	99941705	rs2022039	T	C	3925.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chrX	100075741	rs2859166	T	G	2473.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.65;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chrX	100075747	rs2859167	T	C	2384.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.00;SOR=1.938;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chrX	100077193	rs2859168	C	T	894.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chrX	100087557	rs5921665	A	G	630.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chrX	100098355	rs148448908	TAAG	T	2312.73	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chrX	100105418	rs5921669	A	G	2488.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chrX	100212525	rs6616208	T	C	2637.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:2,95:0.98:97
chrX	100242305	rs5921702	G	A	695.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chrX	100243459	rs3934462	G	T	4127.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:1,146:0.99:147
chrX	100245606	rs6523438	A	G	6867.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:1,265:1.00:266
chrX	100265552	rs5921705	T	A	1329.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chrX	100265713	rs7885599	T	C	2047.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chrX	100268568	.	C	A	34.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.812;ClippingRankSum=-0.000;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.28;MQRankSum=-2.200;QD=3.86;ReadPosRankSum=1.732;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:7,2:0.22:9
chrX	100268568	.	CT	AG	46	.	AC=1;AF=0.500;AN=2;BRF=0.46;FR=0.5000;HP=2;HapScore=2;MGOF=74;MMLQ=28;MQ=54.93;NF=2;NR=2;PP=46;QD=24.8669687156;SC=TGGTGAAACCCTGTCTGTACT;SbPval=0.58;Source=Platypus;TC=7;TCF=4;TCR=3;TR=4;WE=100268577;WS=100268562;set=Platypus	GT:AD:AF:DP	1/0:3,4:0.57:7
chrX	100268569	.	T	G	34.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.812;ClippingRankSum=-0.000;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.28;MQRankSum=-2.200;QD=3.86;ReadPosRankSum=1.732;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:7,2:0.22:9
chrX	100268595	.	G	A	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.812;ClippingRankSum=-0.000;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.28;MQRankSum=-2.200;QD=3.86;ReadPosRankSum=2.200;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:7,2:0.22:9
chrX	100268601	.	C	T	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.068;ClippingRankSum=-0.000;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.77;MQRankSum=-1.981;QD=5.82;ReadPosRankSum=0.792;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:5,2:0.29:7
chrX	100268610	.	GCA	G	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.068;ClippingRankSum=-0.000;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.77;MQRankSum=-1.981;QD=4.53;ReadPosRankSum=0.366;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:5,2:0.29:7
chrX	100268615	.	C	CAT	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.842;ClippingRankSum=-0.000;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.39;MQRankSum=-1.834;QD=5.79;ReadPosRankSum=-0.000;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:4,2:0.33:6
chrX	100268623	.	A	C	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.431;ClippingRankSum=-0.000;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.39;MQRankSum=-1.834;QD=7.29;ReadPosRankSum=-0.341;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:4,2:0.33:6
chrX	100268841	rs5967226	C	T	155.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chrX	100275630	rs200657512	AGTTT	A	5299.73	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chrX	100357194	rs12156858	C	G	871.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.59;SOR=4.615;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chrX	100357201	rs12156663	T	C	920.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.85;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chrX	100357417	rs59141949	CT	C	424.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chrX	100357481	rs147421602	T	C	106.28	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.43;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chrX	100357483	.	T	C	106.28	.	AC=2;AF=1.00;AN=2;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.43;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chrX	100357485	rs190903759	T	C	98.25	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.75;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chrX	100357505	.	C	CACACACAT,CACACACACAT	164.79	.	AC=2,0;AF=1.00,0.00;AN=2;DP=7;set=Intersection	GT:AF:DP	1/1:1.00:6
chrX	100375370	rs56066672	TA	T	1365.73	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:2,58:0.97:60
chrX	100387337	rs7883144	C	T	1659.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chrX	100395547	rs2273379	T	G	1643.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chrX	100395663	rs2273380	G	T	6374.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chrX	100400023	rs2295376	A	G	2835.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chrX	100416623	rs72615569	A	T	2292.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:2,88:0.98:90
chrX	100492773	rs5921756	G	A	1332.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chrX	100524134	rs376728310	G	A	6590.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chrX	100536873	.	C	CTT	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.842;ClippingRankSum=-0.000;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.53;ReadPosRankSum=2.189;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chrX	100547933	rs5951328	A	G	4989.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chrX	100748078	rs5991911	A	G	2662.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chrX	100749471	.	G	A	4102.77	.	AC=2;AF=1.00;AN=2;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chrX	100911066	rs3850315	C	T	2830.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chrX	101138792	rs5944882	T	C	6102.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chrX	101141776	rs67953349	AC	A	734.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chrX	101141793	rs5944778	G	A	581.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chrX	101381875	rs149647049	C	T	2956.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chrX	101395780	rs11408120	T	TG	6786.73	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chrX	101396157	rs61747570	C	T	13938.77	.	AC=2;AF=1.00;AN=2;DB;DP=511;set=Intersection	GT:AD:AF:DP	1/1:0,504:1.00:504
chrX	101409254	.	GT	G	332.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.250;ClippingRankSum=0.000;DP=52;ExcessHet=3.0103;FS=3.677;MLEAC=1;MLEAF=0.500;MQ=60.42;MQRankSum=1.013;QD=8.12;ReadPosRankSum=0.014;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:13,28:0.68:41
chrX	101623586	.	ATGGTGG	A,ATGG	6807.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=361;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=58.10;QD=36.21;SOR=6.251;set=HC	GT:AD:AF:DP	1/2:0,20,168:0.11,0.89:188
chrX	102174079	rs143668551	A	G	1184.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chrX	102174240	rs1014218	T	C	1032.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.19;SOR=1.845;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chrX	102174289	rs34889669	T	C	180.80	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.83;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chrX	102564583	rs7557	A	G	5172.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chrX	102565203	rs2246252	G	C	680.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.23;SOR=1.893;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chrX	102831217	rs221946	C	T	583.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chrX	102840421	rs221931	G	T	1072.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chrX	102842041	rs11010	T	C	7256.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chrX	102978965	rs12844618	T	G	7249.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chrX	102979486	rs4907817	T	C	3102.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chrX	103031700	rs11371342	A	AG	617.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.07;QD=30.89;SOR=1.127;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chrX	103036412	rs521895	A	G	834.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chrX	103267865	rs553509	C	T	3047.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chrX	103268333	rs578953	G	A	4905.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chrX	103274226	rs494006	A	G	739.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chrX	103495088	rs76090537	G	C	134.31	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.76;QD=33.58;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chrX	103495090	rs200088361	G	C	288.94	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.69;QD=36.12;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chrX	104464276	rs375033944	CA	C	17291.73	.	AC=2;AF=1.00;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	1/1:0,387:1.00:387
chrX	104464281	rs367644904	TC	T	17375.73	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:0,385:1.00:385
chrX	105132225	rs17332342	T	C	2215.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chrX	105153001	rs209372	A	G	6669.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:3,240:0.99:243
chrX	105179132	rs209095	C	T	3385.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:2,124:0.98:126
chrX	105192769	rs113490419	CT	C	100.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.962;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.80;ReadPosRankSum=-1.697;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:97,29:0.23:126
chrX	106028279	.	G	GT	148.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.287;ClippingRankSum=0.000;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.32;ReadPosRankSum=1.211;SOR=0.789;set=HC	GT:AD:AF:DP	0/1:46,18:0.28:64
chrX	106061851	rs367992174	T	G	3439.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:2,134:0.99:136
chrX	106092450	.	AT	A	48.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.870;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.95;ReadPosRankSum=0.384;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:14,11:0.44:25
chrX	106184601	rs3835279	TGAGAGAGA	T	1125.73	.	AC=2;AF=1.00;AN=2;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.83;MQRankSum=0.544;QD=41.69;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:1,26:0.96:27
chrX	106200202	rs6622126	G	A	4943.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chrX	106221490	rs12012022	C	T	4140.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:1,152:0.99:153
chrX	106841056	.	TGAG	T	374.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.527;ClippingRankSum=0.000;DP=247;ExcessHet=3.0103;FS=1.756;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=2.814;QD=1.77;ReadPosRankSum=0.097;SOR=0.808;set=HC	GT:AD:AF:DP	0/1:188,24:0.11:212
chrX	107415825	rs2881142	T	C	1937.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;MQ=60.14;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chrX	107418281	rs2295914	C	T	3100.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chrX	107418906	rs4623610	A	G	5301.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chrX	107423674	.	TACACAC	T,TAC	3067.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.25;QD=39.84;SOR=1.833;set=HC	GT:AD:AF:DP	1/2:0,17,60:0.22,0.78:77
chrX	107430579	rs1266715	G	A	2422.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chrX	107433688	rs1042065	A	G	6071.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chrX	107437848	rs1266719	G	C	4192.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:1,160:0.99:161
chrX	107438119	rs1266720	G	T	546.79	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:1,18:0.95:19
chrX	107448639	rs1266730	G	T	5659.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chrX	107449938	rs1266731	G	C	1328.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chrX	107450101	rs1266732	T	G	1526.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chrX	107455014	rs1266736	C	T	709.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chrX	107463090	rs201304389	CCCATATTGTATT	C	2384.73	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chrX	107464327	.	C	CA	133.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.368;ClippingRankSum=0.000;DP=115;ExcessHet=3.0103;FS=0.923;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.19;ReadPosRankSum=1.357;SOR=0.849;set=HC	GT:AD:AF:DP	0/1:90,22:0.20:112
chrX	107819223	rs6622333	T	C	2477.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chrX	107824012	rs200100909	ATG	A	1533.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chrX	107829773	rs2272944	C	T	475.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.43;SOR=1.493;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chrX	107844780	rs28497884	A	G	286.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chrX	107918007	rs200814705	CT	C	99.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.504;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=1.037;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.61;ReadPosRankSum=2.185;SOR=0.525;set=HC	GT:AD:AF:DP	0/1:42,20:0.32:62
chrX	107976940	rs1801164	G	C	6467.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:2,227:0.99:229
chrX	107979512	rs2073114	C	T	3162.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.55;SOR=1.545;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chrX	107979515	rs2073115	C	T	3226.73	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.60;SOR=1.545;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chrX	108636057	.	CT	C	36.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.462;ClippingRankSum=0.000;DP=108;ExcessHet=3.0103;FS=2.318;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.35;ReadPosRankSum=1.322;SOR=0.418;set=HC	GT:AD:AF:DP	0/1:84,20:0.19:104
chrX	108708516	rs502209	C	T	5442.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:1,198:0.99:199
chrX	108708552	rs12008095	A	G	5432.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:1,201:1.00:202
chrX	108904729	rs839408	C	T	1208.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chrX	108917757	rs5942830	T	C	878.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chrX	108917773	rs5943413	A	G	670.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chrX	109416688	.	ATT	A,AT	1737.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=145;set=Intersection	GT:AF:DP	1/2:0.22,0.68:125
chrX	109419165	rs2795995	G	A	2277.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chrX	110416182	rs372455411	TTC	T	559.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.541;ClippingRankSum=0.000;DB;DP=224;ExcessHet=3.0103;FS=1.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.62;ReadPosRankSum=0.680;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:175,39:0.18:214
chrX	111090299	rs200604504	C	CA	437	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:6,25:0.81:31
chrX	111698036	rs6568050	T	C	4432.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chrX	111698613	rs7053563	T	C	6945.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:4,243:0.98:247
chrX	114082535	rs5946005	G	A	4315.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chrX	114400318	rs4361922	T	G	1056.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chrX	114425181	.	A	AGAGGCCGCTCGCCCAACGCCCACAGCG	8530.73	.	AC=2;AF=1.00;AN=2;DP=367;set=Intersection	GT:AD:AF:DP	1/1:4,265:0.99:269
chrX	114425400	rs12857270	G	A	9948.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	1/1:0,355:1.00:355
chrX	114426171	rs5946294	C	T	13018.77	.	AC=2;AF=1.00;AN=2;DB;DP=492;set=Intersection	GT:AD:AF:DP	1/1:0,480:1.00:480
chrX	114426917	rs4911809	C	T	7231.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chrX	114468473	.	CCCG	C	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.759;ClippingRankSum=0.000;DP=72;ExcessHet=3.0103;FS=5.067;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.70;ReadPosRankSum=0.543;SOR=1.961;set=HC	GT:AD:AF:DP	0/1:46,5:0.10:51
chrX	115568092	rs2312054	A	T	530.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chrX	115575989	rs12391221	A	C	1542.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chrX	115882432	rs73215309	A	G	1479.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chrX	117032973	rs6645983	C	G	14484.77	.	AC=2;AF=1.00;AN=2;DB;DP=540;set=Intersection	GT:AD:AF:DP	1/1:0,526:1.00:526
chrX	117035704	rs112372720	AATT	A	2052.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chrX	117035914	.	T	TA	32.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.167;ClippingRankSum=0.000;DP=130;ExcessHet=3.0103;FS=1.072;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.32;ReadPosRankSum=1.357;SOR=0.479;set=HC	GT:AD:AF:DP	0/1:86,16:0.16:102
chrX	117053499	rs6645994	C	T	6997.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:2,265:0.99:267
chrX	117106498	rs139530090	A	G	698.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chrX	117106630	rs6646017	A	G	2908.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:1,114:0.99:115
chrX	117107363	rs6646018	T	C	6677.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:1,255:1.00:256
chrX	117117398	rs368634632	GA	G	101.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.575;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.03;ReadPosRankSum=1.233;SOR=0.562;set=HC	GT:AD:AF:DP	0/1:34,16:0.32:50
chrX	117119410	.	T	TAA	113.19	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.674;ClippingRankSum=-0.000;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=14.15;ReadPosRankSum=-1.534;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:1,7:0.88:8
chrX	117695200	rs5909545	G	C	256.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chrX	117700141	rs2286977	A	G	2816.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chrX	117742356	rs5910394	C	T	2797.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chrX	117810831	rs5957040	C	T	719.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chrX	117817266	rs4372173	C	T	2029.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chrX	117874898	rs2246663	T	C	1393.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chrX	118108785	rs3813933	T	C	7832.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chrX	118124694	rs3827453	G	C	737.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chrX	118146810	rs5910481	C	T	1398.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chrX	118281538	rs5910522	C	A	1784.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chrX	118281635	rs11405916	G	GC	735.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chrX	118284579	rs5957121	G	A	484.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chrX	118514072	rs217941	A	G	3065.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chrX	118533299	rs217975	A	G	124.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chrX	118533366	rs217976	G	A	654.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chrX	118544448	rs16274	T	C	508.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chrX	118603729	rs143413528	G	A	42.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.665;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=4.483;MLEAC=1;MLEAF=0.500;MQ=59.30;MQRankSum=-9.145;QD=0.31;ReadPosRankSum=2.353;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:126,11:0.08:137
chrX	118603742	rs148294496	A	C	96.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.355;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=4.669;MLEAC=1;MLEAF=0.500;MQ=59.21;MQRankSum=-8.568;QD=0.80;ReadPosRankSum=3.720;SOR=0.559;set=HC	GT:AD:AF:DP	0/1:110,11:0.09:121
chrX	118603747	rs141428607	A	T	117.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.040;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=6.936;MLEAC=1;MLEAF=0.500;MQ=59.15;MQRankSum=-8.265;QD=1.04;ReadPosRankSum=3.934;SOR=0.496;set=HC	GT:AD:AF:DP	0/1:102,11:0.10:113
chrX	118603818	rs77766798	T	G	167.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.849;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=1.070;MLEAC=1;MLEAF=0.500;MQ=58.29;MQRankSum=-10.611;QD=1.35;ReadPosRankSum=-1.347;SOR=0.889;set=HC	GT:AD:AF:DP	0/1:110,14:0.11:124
chrX	118603830	rs73637847	A	G	68.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.795;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=2.635;MLEAC=1;MLEAF=0.500;MQ=58.63;MQRankSum=-11.335;QD=0.53;ReadPosRankSum=-0.384;SOR=1.109;set=HC	GT:AD:AF:DP	0/1:119,11:0.08:130
chrX	118676320	rs77586550	C	CACCCA	2541.73	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chrX	118679315	.	C	CA	233.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.847;ClippingRankSum=0.000;DP=27;ExcessHet=3.0103;FS=4.406;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.74;ReadPosRankSum=-1.379;SOR=2.049;set=HC	GT:AD:AF:DP	0/1:8,16:0.67:24
chrX	118699320	rs5910616	A	G	13722.77	.	AC=2;AF=1.00;AN=2;DB;DP=524;set=Intersection	GT:AD:AF:DP	1/1:0,516:1.00:516
chrX	118725314	rs373344223	A	G	2574.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chrX	118758117	rs112780297	T	G	1546.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.28;QD=40.70;SOR=1.493;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chrX	118758120	rs66945031	GT	G	1537.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.29;QD=41.56;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chrX	118763406	rs3088376	C	T	2636.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chrX	118827317	rs17261138	A	C	369.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chrX	118892888	rs2782222	G	C	764.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chrX	118893054	rs2782223	C	A	3988.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chrX	118893137	rs2782224	T	C	3948.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chrX	118893413	rs2782225	T	C	4320.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:2,157:0.99:159
chrX	118920809	rs7885997	C	T	3187.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chrX	118921530	rs73214964	A	C	607.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chrX	118925181	rs41304508	C	A	17497.77	.	AC=2;AF=1.00;AN=2;DB;DP=660;set=Intersection	GT:AD:AF:DP	1/1:2,655:1.00:657
chrX	118925705	rs2240448	C	T	1756.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chrX	118985711	rs373850121	CT	C	760.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.090;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=3.480;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.53;ReadPosRankSum=0.475;SOR=0.741;set=HC	GT:AD:AF:DP	1/1:8,58:0.88:66
chrX	119054001	rs3829719	C	T	4333.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chrX	119065893	rs194302	G	A	4015.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chrX	119070411	rs194307	T	A	1747.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chrX	119070567	rs194308	A	T	944.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chrX	119387833	rs201958171	C	CTGA	11946.73	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:2,266:0.99:268
chrX	119394904	rs3752341	G	T	757.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chrX	119421163	.	TAC	T	264	.	AC=1;AF=0.500;AN=2;BRF=0.34;FR=0.5000;HP=3;HapScore=1;MGOF=7;MMLQ=25;MQ=60.0;NF=1;NR=9;PP=264;QD=26.7;SC=AAGGTTTGAATACACACACAC;SbPval=0.62;Source=Platypus;TC=42;TCF=4;TCR=38;TR=10;WE=119421177;WS=119421153;set=Platypus	GT:AD:AF:DP	0/1:32,10:0.24:42
chrX	119421166	.	AC	A	382.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.959;ClippingRankSum=0.000;DP=66;ExcessHet=3.0103;FS=2.999;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.11;ReadPosRankSum=-1.870;SOR=0.267;set=HC	GT:AD:AF:DP	0/1:24,18:0.43:42
chrX	119421167	rs45453700	C	A	565.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:18,24:0.57:42
chrX	119421168	.	AC	A	382.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.749;ClippingRankSum=0.000;DP=65;ExcessHet=3.0103;FS=4.792;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.90;ReadPosRankSum=-1.933;SOR=0.243;set=HC	GT:AD:AF:DP	0/1:25,18:0.42:43
chrX	119504439	rs2075099	G	A	858.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chrX	119510144	rs3213723	C	G	959.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chrX	119512764	rs2231244	C	T	696.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chrX	119590533	rs12097	T	A	841.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.082;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.38;ReadPosRankSum=1.889;SOR=0.297;set=HC	GT:AD:AF:DP	1/1:1,35:0.97:36
chrX	119675354	.	C	CA	133.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.430;ClippingRankSum=0.000;DP=37;ExcessHet=3.0103;FS=1.579;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=1.226;QD=3.71;ReadPosRankSum=0.134;SOR=0.387;set=HC	GT:AD:AF:DP	0/1:22,14:0.39:36
chrX	119760629	rs17261572	A	T	5386.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:2,195:0.99:197
chrX	120008979	rs871733	T	C	1014.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chrX	120504923	rs5956321	A	G	2787.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chrX	120505069	rs7885213	G	T	982.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chrX	122318386	rs58044961	A	AG	4922.73	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chrX	122319917	rs2269551	T	C	3762.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chrX	122336448	rs2285127	T	C	628.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:2,25:0.93:27
chrX	122336600	rs11452643	T	TG	2338.73	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chrX	123040729	rs28382739	C	T	1190.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chrX	123041043	rs28382740	A	G	3397.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:1,121:0.99:122
chrX	123195035	rs2297651	A	C	3309.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:3,119:0.98:122
chrX	123195593	.	C	CTT	92.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.434;ClippingRankSum=-0.000;DP=15;ExcessHet=3.0103;FS=2.632;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.43;ReadPosRankSum=0.632;SOR=0.595;set=HC	GT:AD:AF:DP	0/1:4,7:0.64:11
chrX	123554646	rs12013090	T	C	2336.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chrX	123554726	rs2076164	A	G	883.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chrX	123587110	rs2223416	C	A	3489.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chrX	123615545	.	G	GTATA	889.73	.	AC=2;AF=1.00;AN=2;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=38.68;SOR=2.179;set=HC	GT:AD:AF:DP	1/1:3,20:0.87:23
chrX	123620999	rs41312783	C	T	4079.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chrX	123630790	rs3788774	G	A	774.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chrX	123654616	rs146602991	G	A	633.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:1,22:0.96:23
chrX	123654641	rs370205641	TAA	T	220.74	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.07;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chrX	125953932	rs5931715	A	G	3706.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chrX	125955644	rs2269776	A	T	813.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.83;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chrX	125955644	.	ACG	TCA	348	.	AC=2;AF=1.00;AN=2;BRF=0.41;FR=1.0000;HP=3;HapScore=2;MGOF=17;MMLQ=28;MQ=59.8;NF=2;NR=14;PP=348;QD=25.0917421789;SC=ACTTGAAACCACGTACCCTCC;SbPval=0.6;Source=Platypus;TC=16;TCF=2;TCR=14;TR=16;WE=125955654;WS=125955634;set=Platypus	GT:AD:AF:DP	1/1:0,16:1.00:16
chrX	125955646	rs12558292	G	A	813.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.21;SOR=3.500;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chrX	128674631	.	TG	T	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.562;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.35;ReadPosRankSum=1.437;SOR=0.089;set=HC	GT:AD:AF:DP	0/1:25,6:0.19:31
chrX	128880614	rs3747343	T	C	3478.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chrX	128885573	.	AG	A	395.74	.	AC=2;AF=1.00;AN=2;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.45;QD=35.98;SOR=2.494;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chrX	128885576	.	AAGGAAGGAAGGAAGG	A	395.74	.	AC=2;AF=1.00;AN=2;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.44;QD=35.98;SOR=2.494;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chrX	128885595	rs182541529	G	A	404.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.44;QD=36.80;SOR=2.494;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chrX	128889464	rs5932674	G	A	525.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chrX	128890386	rs141964173	C	T	3407.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chrX	128925156	rs5932684	T	G	522.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chrX	128948893	rs5932686	T	C	1297.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.44;SOR=1.788;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chrX	128948897	.	GTT	G	128.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.426;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.77;ReadPosRankSum=0.784;SOR=1.140;set=HC	GT:AD:AF:DP	0/1:18,9:0.33:27
chrX	128957640	rs2275605	T	C	6326.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:1,241:1.00:242
chrX	129147079	rs4830173	T	C	8801.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chrX	129201179	rs2181440	C	T	2675.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chrX	129265852	.	A	AT	101.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.176;ClippingRankSum=0.000;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.08;ReadPosRankSum=-2.424;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:35,14:0.29:49
chrX	129269980	rs209998	G	A	1515.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chrX	129279648	rs12559753	C	T	117.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chrX	129283520	rs1139851	A	G	5260.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chrX	129290699	rs189994	T	C	941.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chrX	129338973	.	G	GA	35	.	AC=2;AF=1.00;AN=2;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=8.75;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chrX	129349295	rs209238	T	G	3345.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chrX	129354240	rs1160681	C	A	677.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chrX	129354254	rs3081123	TAA	T	763.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chrX	130217020	rs5932835	G	C	940.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chrX	130409884	rs55936630	A	T	868.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chrX	130410965	rs4830219	A	G	3663.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:2,143:0.99:145
chrX	130412178	rs4524963	C	G	1299.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chrX	130416958	rs5932877	C	T	6012.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chrX	130420006	rs5930458	T	C	1794.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chrX	130420415	rs4495600	T	C	5124.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chrX	130423359	rs6637829	C	G	4551.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chrX	130423543	rs6637830	G	C	6228.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chrX	130678467	rs499030	A	G	8226.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chrX	130678596	rs17316625	C	G	12871.77	.	AC=2;AF=1.00;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	1/1:0,467:1.00:467
chrX	130678844	rs655415	A	C	9556.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:2,340:0.99:342
chrX	131203438	rs72214699	CATATATAT	C	155.73	.	AC=1;AF=0.500;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=22.25;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chrX	131231430	.	TAC	T	107.73	.	AC=1;AF=0.500;AN=2;DP=28;set=Intersection	GT:AD:AF:DP	0/1:12,6:0.33:18
chrX	131803352	rs10550199	ATC	A	415.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:2,15:0.88:17
chrX	132437337	rs1048369	G	A	3518.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:1,119:0.99:120
chrX	132438872	rs1129980	C	A	1866.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chrX	132458578	rs57898529	CAAA	C	197.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;ClippingRankSum=-0.000;DB;DP=19;ExcessHet=3.0103;FS=4.771;MLEAC=1;MLEAF=0.500;MQ=60.57;MQRankSum=-0.000;QD=15.21;ReadPosRankSum=-0.210;SOR=1.872;set=HC	GT:AD:AF:DP	0/1:5,8:0.62:13
chrX	132549013	rs2073288	G	A	2777.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:1,101:0.99:102
chrX	132838305	rs374169314	GA	G	95.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.304;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=1.634;QD=2.13;ReadPosRankSum=-0.387;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:30,15:0.33:45
chrX	132888207	rs370737647	TA	T	123.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.328;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.75;ReadPosRankSum=-1.015;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:28,17:0.38:45
chrX	133379551	rs2428577	C	T	7056.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chrX	133511988	rs5978001	G	A	642.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chrX	133528116	rs6529627	A	C	631.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chrX	133620474	.	G	GT	161.14	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DP=13;ExcessHet=3.0103;FS=5.304;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=12.40;ReadPosRankSum=-1.680;SOR=3.442;set=HC	GT:AD:AF:DP	1/1:2,11:0.85:13
chrX	133680547	rs757309	G	A	290.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chrX	133921640	.	CTT	C	152.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.063;ClippingRankSum=0.000;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.18;ReadPosRankSum=0.061;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:5,10:0.67:15
chrX	133948733	rs201263798	CA	C	165.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.476;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=3.746;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=1.255;QD=2.76;ReadPosRankSum=-0.928;SOR=1.627;set=HC	GT:AD:AF:DP	0/1:34,26:0.43:60
chrX	134125475	rs11739	C	G	723.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chrX	134156121	rs2475853	G	C	3134.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chrX	134185997	rs2498776	T	A	2347.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chrX	134257474	rs151236834	A	G	302.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.33;QD=30.28;SOR=4.804;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chrX	134427640	rs5978119	C	G	5524.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chrX	134494380	rs372033639	C	G	5094.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.67;SOR=0.768;set=HC	GT:AD:AF:DP	1/1:0,191:1.00:191
chrX	134703108	rs1937729	T	G	128.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chrX	134708007	rs72290283	C	CT	123.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.139;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=5.221;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.775;QD=1.28;ReadPosRankSum=-0.373;SOR=0.286;set=HC	GT:AD:AF:DP	0/1:77,20:0.21:97
chrX	134715274	rs3737330	G	A	485.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chrX	134948034	rs2034920	A	G	1972.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chrX	134995078	rs41302146	G	T	7606.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:3,288:0.99:291
chrX	135055694	rs6635201	T	C	2034.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chrX	135056299	rs5974575	G	A	101.90	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.38;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chrX	135080623	rs370833071	C	CT	825.94	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.063;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=1.146;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=0.656;QD=11.47;ReadPosRankSum=1.062;SOR=0.459;set=HC	GT:AD:AF:DP	0/1:16,56:0.78:72
chrX	135252234	rs3215593	AC	A	2612.73	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chrX	135290250	rs2236003	G	A	751.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chrX	135292022	rs2076705	C	T	1393.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chrX	135307049	rs5929742	G	A	2350.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chrX	135310785	rs2273221	T	C	4113.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chrX	135313034	rs1055497	T	G	10874.77	.	AC=2;AF=1.00;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	1/1:0,404:1.00:404
chrX	135313185	rs34471049	CT	C	49.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.125;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.11;ReadPosRankSum=0.000;SOR=0.814;set=HC	GT:AD:AF:DP	0/1:32,13:0.29:45
chrX	135322440	rs5975706	A	T	623.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chrX	135323452	rs5975707	G	A	2503.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chrX	135338312	rs5975709	C	T	2007.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chrX	135469735	.	CTG	C	98	.	AC=1;AF=0.500;AN=2;BRF=0.42;FR=0.5000;HP=1;HapScore=2;MGOF=6;MMLQ=23;MQ=60.0;NF=3;NR=0;PP=98;QD=35.3333333333;SC=TGGCCTGTGACTGTGTGTGTG;SbPval=1.0;Source=Platypus;TC=14;TCF=13;TCR=1;TR=3;WE=135469744;WS=135469730;set=Platypus	GT:AD:AF:DP	1/0:11,3:0.21:14
chrX	135730555	rs1126535	T	C	4707.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chrX	135767763	rs377510796	CA	C	63.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.872;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=1.224;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.696;QD=1.01;ReadPosRankSum=-0.401;SOR=1.073;set=HC	GT:AD:AF:DP	0/1:44,19:0.30:63
chrX	135819719	rs561435	C	G	1312.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chrX	135961587	rs2011584	G	T	2105.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.568;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=3.355;QD=14.42;ReadPosRankSum=1.898;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:39,107:0.73:146
chrX	137749997	rs5976185	A	T	714.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chrX	138067202	rs34825181	A	G	7409.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chrX	138067368	rs5974786	G	A	4154.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chrX	138667452	rs5909018	C	T	1454.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chrX	138670026	.	TCA	T	55	.	AC=1;AF=0.500;AN=2;BRF=0.11;FR=0.5000;HP=2;HapScore=2;MGOF=0;MMLQ=24;MQ=60.0;NF=0;NR=2;PP=55;QD=29.5;SC=TTTCTCTCTCTCACACACACA;SbPval=1.0;Source=Platypus;TC=14;TCF=1;TCR=13;TR=2;WE=138670035;WS=138670016;set=Platypus	GT:AD:AF:DP	0/1:12,2:0.14:14
chrX	138679712	rs1051619	T	A	1568.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chrX	138687167	rs185701233	G	T	951.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chrX	138689704	rs41300934	T	A	341.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chrX	138697246	rs2076501	A	C	2454.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chrX	138698652	rs68033160	GA	G	525.84	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.607;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=65.61;MQRankSum=3.741;QD=12.83;ReadPosRankSum=-1.194;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:6,35:0.85:41
chrX	138698665	rs5909056	T	C	1609.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=66.52;QD=39.26;SOR=1.075;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chrX	138713463	rs56186070	G	GT	2308.73	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chrX	138724725	rs926563	G	A	4044.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.10;SOR=0.759;set=HC	GT:AD:AF:DP	1/1:0,155:1.00:155
chrX	138724841	rs200847661	GA	G	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.677;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=4.813;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=-0.583;QD=1.57;ReadPosRankSum=0.333;SOR=0.132;set=HC	GT:AD:AF:DP	0/1:18,8:0.31:26
chrX	138774209	rs4824861	C	T	3641.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chrX	138811003	rs2094702	G	A	2004.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chrX	138825675	rs1268015	T	C	431.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chrX	138864932	.	G	GA	42.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.491;ClippingRankSum=0.000;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=2.801;QD=0.51;ReadPosRankSum=-1.928;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:68,15:0.18:83
chrX	138882172	rs10717380	AC	A	156.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.820;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=6.842;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=0.000;QD=4.61;ReadPosRankSum=-0.896;SOR=0.063;set=HC	GT:AD:AF:DP	0/1:21,13:0.38:34
chrX	138897130	rs2491014	A	C	2245.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chrX	139038443	rs5955139	G	A	10422.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	1/1:0,380:1.00:380
chrX	139038968	rs5953892	G	A	2408.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chrX	139099429	rs5907565	T	G	2027.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chrX	139099699	rs5909001	C	T	1141.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chrX	139099828	rs5909002	T	A	4537.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chrX	139100153	rs202135269	T	C	5156.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chrX	139298295	rs396467	C	T	4286.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.78;QD=27.30;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:0,157:1.00:157
chrX	139298612	rs411420	T	C	2284.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chrX	140008385	rs5907732	G	T	3632.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chrX	140008515	rs5907733	C	T	769.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chrX	140271268	rs2038375	G	C	3238.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chrX	140953078	rs1120947	A	G	150.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chrX	140967287	rs12557512	C	T	782.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chrX	140983031	rs176023	A	G	2145.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chrX	140983064	rs176024	G	A	3371.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chrX	140983103	rs176025	C	T	4629.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chrX	140983127	rs176026	G	A	4954.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chrX	140993264	rs176036	G	A	10478.77	.	AC=2;AF=1.00;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	1/1:0,392:1.00:392
chrX	140993642	rs176037	C	T	7429.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chrX	140993877	.	C	A	2962	.	AC=1;AF=0.500;AN=2;BRF=0.53;FR=0.5000;HP=2;HapScore=1;MGOF=48;MMLQ=28;MQ=51.91;NF=62;NR=107;PP=2962;QD=20;SC=AGGGTTTTGCCCAGTCTCCTC;SbPval=0.94;Source=Platypus;TC=338;TCF=166;TCR=172;TR=169;WE=140993885;WS=140993842;set=Platypus	GT:AD:AF:DP	0/1:169,169:0.50:338
chrX	140993905	.	CCCTCCTCC	TCCTCCTCC,TCCTCCTCG	2962	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.53;FR=0.5000,0.5000;HP=3;HapScore=2;MGOF=62;MMLQ=28;MQ=47.55;NF=92,25;NR=130,78;PP=2962,2944;QD=20;SC=TCCTGTGAGCCCCTCCTCCTC;SbPval=0.56;Source=Platypus;TC=225;TCF=95;TCR=130;TR=222,103;WE=140993934;WS=140993893;set=Platypus	GT:AF:DP	0/1:0.99:225
chrX	140993926	.	C	T	2962	.	AC=1;AF=0.500;AN=2;BRF=0.53;FR=0.5000;HP=1;HapScore=2;MGOF=62;MMLQ=25;MQ=43.03;NF=20;NR=35;PP=2962;QD=20;SC=CTCCACTTTACTGAGTCTTTT;SbPval=0.18;Source=Platypus;TC=147;TCF=41;TCR=106;TR=55;WE=140993934;WS=140993893;set=Platypus	GT:AD:AF:DP	1/0:92,55:0.37:147
chrX	140994085	.	C	G	2962	.	AC=1;AF=0.500;AN=2;FR=0.5000;HP=4;HapScore=1;MGOF=30;MMLQ=26;NF=129;NR=83;PP=2962;QD=20;SC=TGAGGGTTTTCCCCAGTCTCC;SbPval=0.55;Source=Platypus;TC=232;TCF=141;TCR=91;TR=212;WE=140994093;WS=140994075;set=Platypus	GT:AD:AF:DP	0/1:20,212:0.91:232
chrX	140994171	rs176047	C	G	17399.77	.	AC=2;AF=1.00;AN=2;DB;DP=658;set=Intersection	GT:AD:AF:DP	1/1:7,640:0.99:647
chrX	140994591	rs176048	C	G	15542.77	.	AC=2;AF=1.00;AN=2;DB;DP=631;set=Intersection	GT:AD:AF:DP	1/1:53,575:0.92:628
chrX	142121729	rs4825148	T	C	1186.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chrX	142122058	rs62601929	T	G	1538.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chrX	142795225	rs3859898	G	A	7035.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:1,269:1.00:270
chrX	142803571	rs851092	A	G	788.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chrX	144904882	rs2748588	T	C	8398.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chrX	146993599	.	A	C	234.77	.	AC=2;AF=1.00;AN=2;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.35;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chrX	147003564	rs1270092	T	C	1424.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chrX	147014960	rs4824232	C	T	694.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chrX	147015021	rs4824233	C	T	763.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chrX	147719592	rs5980554	G	T	1432.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chrX	147733265	rs5904246	G	GA	1653.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chrX	147891558	rs11117555	T	C	519.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chrX	147919063	rs375432534	CAGTTA	C	2356.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chrX	148035344	rs10608807	GAC	G	75.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.069;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=4.466;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.02;ReadPosRankSum=-0.826;SOR=0.138;set=HC	GT:AD:AF:DP	0/1:63,11:0.15:74
chrX	148037055	rs16994868	G	C	2338.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chrX	148048207	rs111499310	CTT	C	878.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.021;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.44;MQRankSum=0.442;QD=20.44;ReadPosRankSum=1.457;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:8,35:0.81:43
chrX	148055144	rs5980615	A	G	2621.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chrX	148062377	rs12688573	G	A	1545.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chrX	148062498	rs5936462	C	G	195.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chrX	148582350	rs139515077	CATT	C	1192.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:1,29:0.97:30
chrX	148582549	rs1141608	G	A	6385.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chrX	148615539	rs376352823	C	T	102.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=25.51;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chrX	148615567	.	T	TAGG	277.77	.	AC=2;AF=1.00;AN=2;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=39.68;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chrX	148619841	.	CAG	C	734.73	.	AC=2;AF=1.00;AN=2;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.52;QD=40.82;SOR=5.892;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chrX	148622730	rs3747443	G	A	1641.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chrX	148622745	rs3747442	T	A	1993.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chrX	148627384	rs145921071	A	G	2250.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.90;QD=32.15;SOR=2.173;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chrX	148628490	.	A	T	1186.77	.	AC=2;AF=1.00;AN=2;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.12;QD=28.95;SOR=1.501;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chrX	148681163	.	T	C	189.80	.	AC=2;AF=1.00;AN=2;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.19;QD=27.11;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chrX	148713418	.	T	TCGCCGC	3334.73	.	AC=2;AF=1.00;AN=2;DP=108;set=Intersection	GT:AD:AF:DP	1/1:2,79:0.98:81
chrX	148794953	rs1970766	G	A	1407.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chrX	148797348	rs2233048	C	T	6363.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chrX	148798223	rs2233050	T	C	2834.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chrX	149013727	rs5983916	A	G	10405.77	.	AC=2;AF=1.00;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	1/1:1,395:1.00:396
chrX	149114389	.	G	A	249.78	.	AC=2;AF=1.00;AN=2;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.88;QD=31.22;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chrX	149613617	rs6526057	T	C	851.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chrX	149630848	rs507156	T	C	89.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chrX	149630869	rs622730	A	C	278.78	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.83;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chrX	149630876	.	T	C	253.80	.	AC=2;AF=1.00;AN=2;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.26;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chrX	149680221	rs659188	G	C	2291.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chrX	149680554	rs2070779	C	T	10916.77	.	AC=2;AF=1.00;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	1/1:0,406:1.00:406
chrX	149826503	rs222410	G	A	2243.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chrX	149887054	.	TC	T	207.74	.	AC=2;AF=1.00;AN=2;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.77;SOR=4.804;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chrX	149895603	rs75451888	A	AAT	3092.73	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chrX	149896019	rs3747313	G	A	1770.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chrX	149931106	rs16995747	C	T	3533.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chrX	149937404	rs41311690	T	C	1345.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chrX	149938902	rs139970938	G	T	1612.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chrX	149999696	rs17319111	C	T	1506.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chrX	150348228	rs1202874	C	T	2867.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chrX	150349871	rs13440581	A	G	8510.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chrX	150573322	.	G	GT	72.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.682;ClippingRankSum=0.000;DP=58;ExcessHet=3.0103;FS=1.476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.40;ReadPosRankSum=0.432;SOR=0.375;set=HC	GT:AD:AF:DP	0/1:38,14:0.27:52
chrX	150789334	rs5904324	T	TA	2140.73	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chrX	150789950	rs945815	C	T	1200.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chrX	150816952	rs12845316	A	G	647.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chrX	150867321	rs5925008	C	T	3295.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chrX	150869267	rs4323608	A	G	8281.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chrX	150873651	rs3761541	G	T	1228.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chrX	150911512	.	GT	AC	282	.	AC=2;AF=1.00;AN=2;BRF=0.64;FR=1.0000;HP=2;HapScore=2;MGOF=0;MMLQ=24;MQ=60.0;NF=5;NR=1;PP=282;QD=55.911312477;SC=ACATATATATGTATATATATA;SbPval=0.55;Source=Platypus;TC=8;TCF=7;TCR=1;TR=6;WE=150911521;WS=150911502;set=Platypus	GT:AD:AF:DP	1/1:2,6:0.75:8
chrX	150911513	.	T	TATATATATGTGTGTGTGTATATATATATATATATATATACACACACACATATATATAC	430.73	.	AC=2;AF=1.00;AN=2;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=143.58;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chrX	151092653	rs1047251	G	A	6760.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;MQ=59.99;set=Intersection	GT:AD:AF:DP	1/1:1,245:1.00:246
chrX	151123077	.	CCTG	C	42	.	AC=1;AF=0.500;AN=2;BRF=0.32;FR=0.5000;HP=1;HapScore=2;MGOF=2;MMLQ=24;MQ=60.0;NF=2;NR=0;PP=42;QD=28.5;SC=TCTAGTCGCTCCTGCTGCTGC;SbPval=1.0;Source=Platypus;TC=15;TCF=13;TCR=2;TR=2;WE=151123087;WS=151123067;set=Platypus	GT:AD:AF:DP	0/1:13,2:0.13:15
chrX	151123384	rs45439991	G	A	7152.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chrX	151125971	rs763539	A	G	3095.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chrX	151129822	rs2256882	G	A	1184.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chrX	151138179	rs1139916	A	C	1641.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chrX	151303393	rs210586	C	T	6442.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chrX	151303596	rs210585	C	T	9920.77	.	AC=2;AF=1.00;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	1/1:0,363:1.00:363
chrX	151817912	rs4478723	C	G	903.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.28;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chrX	151821277	rs3810651	T	A	8712.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:0,318:1.00:318
chrX	151869745	rs7057497	C	T	9809.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	1/1:0,359:1.00:359
chrX	151869765	rs7056365	G	T	10422.77	.	AC=2;AF=1.00;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	1/1:0,378:1.00:378
chrX	151899760	rs2515830	A	G	4086.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chrX	151899789	rs3005	G	A	5833.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chrX	151899818	rs2233056	C	T	9342.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:0,332:1.00:332
chrX	151904488	rs2515838	C	A	1778.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chrX	151904609	rs2471781	T	C	4995.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chrX	151908844	rs1894359	AC	TG	7023.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chrX	151909156	rs2515848	A	G	10359.77	.	AC=2;AF=1.00;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	1/1:0,386:1.00:386
chrX	151935150	.	G	C	5265.77	.	AC=2;AF=1.00;AN=2;DP=192;set=Intersection	GT:AD:AF:DP	1/1:2,185:0.99:187
chrX	151996539	rs11428901	C	CT	52.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.113;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=1.633;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.99;ReadPosRankSum=-0.145;SOR=0.351;set=HC	GT:AD:AF:DP	0/1:41,12:0.23:53
chrX	152018832	rs5969919	T	G	1802.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chrX	152089039	rs2071258	G	A	3222.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chrX	152090551	rs2071259	T	C	2438.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chrX	152090809	rs12558188	T	C	2822.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chrX	152091153	rs2071261	A	C	3765.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chrX	152106850	rs5969927	A	G	699.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:1,22:0.96:23
chrX	152158979	rs56350208	T	C	9150.77	.	AC=2;AF=1.00;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	1/1:4,349:0.99:353
chrX	152225379	rs73244173	C	A	560.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chrX	152226542	rs6526155	T	C	5204.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chrX	152727446	rs3020966	T	A	743.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chrX	152727535	rs138590468	TA	T	1046.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chrX	152728155	rs2980032	T	C	8081.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chrX	152735959	rs2032436	C	T	15727.77	.	AC=2;AF=1.00;AN=2;DB;DP=620;set=Intersection	GT:AD:AF:DP	1/1:2,612:1.00:614
chrX	152736686	rs2980037	C	G	1413.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chrX	152752077	rs62594117	C	A	11042.77	.	AC=2;AF=1.00;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	1/1:1,428:1.00:429
chrX	152770402	rs2980053	A	G	2420.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chrX	152771214	rs11363938	GA	G	1123.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chrX	152771509	rs1126499	C	T	7338.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chrX	152773615	rs5945215	G	T	1812.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chrX	152807425	rs762733	G	A	1996.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chrX	152807665	rs2980012	A	G	2079.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chrX	152807923	rs2980013	G	C	8107.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chrX	152815089	rs3020949	A	G	13412.77	.	AC=2;AF=1.00;AN=2;DB;DP=510;set=Intersection	GT:AD:AF:DP	1/1:0,503:1.00:503
chrX	152815886	rs2285035	C	T	1220.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chrX	152818435	rs2239682	G	A	11950.77	.	AC=2;AF=1.00;AN=2;DB;DP=466;set=Intersection	GT:AD:AF:DP	1/1:0,458:1.00:458
chrX	152821887	rs3020957	C	T	1640.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chrX	152823728	rs2269415	G	C	6392.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chrX	152825414	rs3020959	G	T	4554.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:2,179:0.99:181
chrX	152825433	rs2980018	A	G	3552.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chrX	152830322	rs4243536	A	G	3330.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chrX	152834736	rs6643626	T	C	2870.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chrX	152864477	rs199537978	G	GC	53.70	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.85;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chrX	152864513	rs200645137	G	GC	53.70	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.85;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chrX	152864609	.	G	GC	252	.	AC=2;AF=1.00;AN=2;BRF=0.67;FR=1.0000;HP=1;HapScore=2;MGOF=239;MMLQ=24;MQ=57.93;NF=0;NR=3;PP=252;QD=94.0;SC=CGCGGCGGGCGTGCCGCCCCA;SbPval=1.0;Source=Platypus;TC=3;TCF=0;TCR=3;TR=3;WE=152864617;WS=152864599;set=Platypus	GT:AD:AF:DP	1/1:0,3:1.00:3
chrX	152937546	rs200709145	C	T	4838.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chrX	152938409	rs10542443	TAC	T	987.73	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:165,61:0.27:226
chrX	152954025	rs384573	A	G	1015.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chrX	153008911	rs4898368	C	T	68.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chrX	153009197	rs2229539	G	C	245.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chrX	153009289	.	C	A	289	.	AC=1;AF=0.500;AN=2;BRF=0.5;FR=0.5000;HP=3;HapScore=4;MGOF=44;MMLQ=25;MQ=49.77;NF=0;NR=4;PP=289;QD=80.9428031368;SC=CATGCCTGGCCCCTCCTCCTA;SbPval=1.0;Source=Platypus;TC=12;TCF=2;TCR=10;TR=4;WE=153009322;WS=153009279;set=Platypus	GT:AD:AF:DP	1/0:8,4:0.33:12
chrX	153034752	rs2266877	C	T	890.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chrX	153038516	rs5945161	C	G	1883.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chrX	153039615	rs1543781	A	G	6332.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chrX	153041132	rs5945162	C	T	5916.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chrX	153044369	rs2071121	C	A	3051.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:1,102:0.99:103
chrX	153045812	rs762652	C	T	5658.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:1,215:1.00:216
chrX	153047809	rs1981439	A	G	1218.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chrX	153048403	rs916001	T	C	6342.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chrX	153048648	.	T	TC	678	.	AC=1;AF=0.500;AN=2;BRF=0.59;FR=0.5000;HP=8;HapScore=1;MGOF=13;MMLQ=21;MQ=59.57;NF=0;NR=21;PP=678;QD=33.0952380952;SC=TTCCTCCCTGTCCCCCCCCAC;SbPval=1.0;Source=Platypus;TC=72;TCF=4;TCR=68;TR=21;WE=153048665;WS=153048638;set=Platypus	GT:AD:AF:DP	1/0:51,21:0.29:72
chrX	153048656	rs201877372	CA	C	348.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:67,24:0.26:91
chrX	153048657	rs2314343	A	C	1422.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.281;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.63;ReadPosRankSum=-1.397;SOR=1.042;set=HC	GT:AD:AF:DP	0/1:24,67:0.74:91
chrX	153049389	rs3969088	A	G	4272.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.94;SOR=1.240;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chrX	153049389	.	AGA	GGG	1571	.	AC=2;AF=1.00;AN=2;BRF=0.4;FR=1.0000;HP=1;HapScore=1;MGOF=2;MMLQ=28;MQ=60.0;NF=41;NR=23;PP=1571;QD=25.3823105447;SC=AAAGGCTGCAAGACATCTGCT;SbPval=0.51;Source=Platypus;TC=65;TCF=42;TCR=23;TR=64;WE=153049399;WS=153049379;set=Platypus	GT:AD:AF:DP	1/1:1,64:0.98:65
chrX	153049391	rs7052332	A	G	4272.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.05;SOR=1.214;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chrX	153049535	rs4898444	A	G	10679.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.863;ClippingRankSum=0.000;DB;DP=428;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.61;ReadPosRankSum=-0.982;SOR=0.297;set=HC	GT:AD:AF:DP	1/1:1,416:1.00:417
chrX	153050984	rs1802092	G	A	2300.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chrX	153051907	rs2071122	G	A	5026.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chrX	153052649	rs2071123	C	A	1883.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chrX	153052661	rs2269482	A	G	1799.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chrX	153061775	rs2239714	A	G	1742.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chrX	153072107	rs3747309	T	C	2249.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chrX	153073319	rs58306331	G	A	2324.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chrX	153073752	rs3761532	T	C	4068.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chrX	153146400	rs5945361	A	G	433.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chrX	153149118	rs5945167	A	G	1606.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chrX	153149708	rs77883713	G	GC	6743.73	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chrX	153149715	rs6643650	C	G	6406.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chrX	153150791	rs12156710	C	T	7356.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chrX	153150929	rs41311376	G	A	2337.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chrX	153151277	rs56026845	C	G	4765.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chrX	153151280	rs143464562	G	GCC	4812.73	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chrX	153151284	rs199975679	GT	G	4473.73	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chrX	153151423	rs58566947	G	GCGGC	682.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chrX	153151456	rs12837217	T	G	605.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.38;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chrX	153151461	rs12837218	T	G	556.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.83;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chrX	153151467	rs199929222	CG	C	386.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chrX	153151491	rs36095229	GT	G	446.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chrX	153153839	rs5987175	C	T	2386.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chrX	153170447	rs55712963	G	GC	1602.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chrX	153170980	rs56689668	T	G	1984.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chrX	153171993	rs5201	A	G	13185.77	.	AC=2;AF=1.00;AN=2;DB;DP=491;set=Intersection	GT:AD:AF:DP	1/1:0,487:1.00:487
chrX	153174819	rs11394527	T	TG	18876.73	.	AC=2;AF=1.00;AN=2;DB;DP=536;set=Intersection	GT:AD:AF:DP	1/1:0,531:1.00:531
chrX	153174867	rs11405331	T	TG	17815.73	.	AC=2;AF=1.00;AN=2;DB;DP=524;set=Intersection	GT:AD:AF:DP	1/1:0,512:1.00:512
chrX	153175053	rs56015121	G	GC	2314.73	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chrX	153178459	rs5904376	G	GC	2209.73	.	AC=2;AF=1.00;AN=2;DB;DP=70;MQ=60.15;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chrX	153186412	rs34153599	A	AG	3647.73	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chrX	153186484	rs11428457	T	TC	4635.73	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chrX	153208197	rs11372702	T	TG	1227.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chrX	153210179	rs146096296	T	TG	3890.73	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chrX	153210195	.	G	GGC	3602.73	.	AC=2;AF=1.00;AN=2;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chrX	153210199	rs377619070	GA	G	3497.73	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chrX	153215839	rs3027875	G	A	4221.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chrX	153246518	.	C	G	984.77	.	AC=2;AF=1.00;AN=2;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.45;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chrX	153277889	rs2239673	C	T	634.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chrX	153278829	rs1059703	G	A	3988.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chrX	153279822	.	TAAAAA	T	1456.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.636;ClippingRankSum=0.000;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=0.000;QD=29.13;ReadPosRankSum=0.872;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:3,47:0.94:50
chrX	153279858	rs5945174	G	A	1174.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chrX	153284192	rs1059702	A	G	9393.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:0,338:1.00:338
chrX	153284483	rs1059701	G	A	3631.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chrX	153482563	rs138416189	G	C	983.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.721;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=5.441;MLEAC=1;MLEAF=0.500;MQ=46.69;MQRankSum=-1.511;QD=18.56;ReadPosRankSum=-1.497;SOR=1.751;set=HC	GT:AD:AF:DP	0/1:15,38:0.72:53
chrX	153553781	rs4898475	G	A	9748.77	.	AC=2;AF=1.00;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	1/1:1,363:1.00:364
chrX	153579448	rs2070822	A	G	1724.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chrX	153592314	rs148985076	AC	A	5226.73	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chrX	153595246	rs4898478	G	C	9518.77	.	AC=2;AF=1.00;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	1/1:0,365:1.00:365
chrX	153595259	rs4898479	G	A	8403.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chrX	153599180	rs5987249	A	G	5377.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chrX	153609616	rs17426	GC	CT	1622.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.86;SOR=1.121;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chrX	153629155	rs12012747	A	G	4542.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chrX	153633359	rs1130929	G	C	9831.77	.	AC=2;AF=1.00;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	1/1:0,373:1.00:373
chrX	153633953	rs1050094	T	C	1180.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chrX	153637305	rs2070807	T	C	1796.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chrX	153657083	rs28497482	A	G	3353.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chrX	153660041	rs11156577	C	T	305.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.48;SOR=2.670;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chrX	153660070	rs3737557	T	C	602.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chrX	153668022	rs370252579	CA	C	145.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.401;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=2.622;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.11;ReadPosRankSum=2.250;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:4,12:0.75:16
chrX	153668172	rs68141802	A	G	2628.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chrX	153690397	rs5986979	T	A	2608.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chrX	153690709	rs72227759	CTGG	C	1001.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chrX	153691888	rs5987264	C	G	1357.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.62;SOR=2.540;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chrX	153692046	rs113493627	G	A	510.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chrX	153693811	rs5945429	C	T	5054.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:2,199:0.99:201
chrX	153694334	rs5945430	C	G	6753.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:2,245:0.99:247
chrX	153695908	rs60361517	G	T	6353.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chrX	153696247	rs5987266	G	C	9747.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:0,347:1.00:347
chrX	153696913	rs7886727	C	T	16993.77	.	AC=2;AF=1.00;AN=2;DB;DP=643;set=Intersection	GT:AD:AF:DP	1/1:0,637:1.00:637
chrX	153697347	rs5986981	C	T	10618.77	.	AC=2;AF=1.00;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	1/1:1,397:1.00:398
chrX	153697656	rs45512498	T	A	3397.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chrX	153699364	rs5987267	G	C	2708.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chrX	153706264	rs6567	C	G	2303.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chrX	153713787	rs7057286	C	T	8378.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:5,320:0.98:325
chrX	153714030	rs5945433	G	T	7791.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:1,299:1.00:300
chrX	153714785	rs12392491	T	G	1634.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chrX	153718269	rs143659474	C	T	2814.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chrX	153760508	rs2071429	A	G	6346.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:2,230:0.99:232
chrX	153760654	rs2230037	G	A	6885.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chrX	153880830	rs4326559	A	C	10143.77	.	AC=2;AF=1.00;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	1/1:4,384:0.99:388
chrX	153881525	rs17328091	G	C	13386.77	.	AC=2;AF=1.00;AN=2;DB;DP=525;set=Intersection	GT:AD:AF:DP	1/1:1,511:1.00:512
chrX	153991099	rs199422241	C	G	731.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chrX	153994596	rs2728532	G	T	4606.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;MQ=60.06;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chrX	154009617	rs11318110	AG	A	1285.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.23;QD=29.22;SOR=1.662;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chrX	154013483	rs3215184	A	AC	482.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:1,19:0.95:20
chrX	154020114	rs1126762	C	A	9039.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:0,332:1.00:332
chrX	154130223	rs4074307	A	G	1261.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chrX	154132090	rs4898352	A	T	1227.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chrX	154158285	rs1800291	G	C	5047.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chrX	154194989	rs7058826	C	T	5002.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chrX	154437045	rs73641118	A	G	497.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.11;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chrX	154437056	rs73641119	T	C	695.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chrX	154456644	rs57301248	AT	A	2768.73	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:24,176:0.88:200
chrX	154456747	rs572013	A	G	4899.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chrX	154507173	rs559165	T	G	2633.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chrX	154721340	.	C	CA	461.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.088;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=1.047;MLEAC=1;MLEAF=0.500;MQ=51.02;MQRankSum=-5.785;QD=7.00;ReadPosRankSum=-0.866;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:30,36:0.55:66
chrY	4968368	rs199979134	G	T	2513.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.02;QD=29.57;SOR=1.039;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chrY	4968655	rs75134848	T	G	2047.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.25;QD=30.56;SOR=2.483;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chrY	13310559	.	T	C	618.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.209;ClippingRankSum=0.000;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.99;MQRankSum=-11.967;QD=4.24;ReadPosRankSum=-3.201;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:120,26:0.18:146
chrY	13310567	rs80348613	T	C	717.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.053;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.07;MQRankSum=-12.636;QD=4.40;ReadPosRankSum=-2.580;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:132,31:0.19:163
chrY	13310578	rs200185916	C	T	1328.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.051;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=0.604;MLEAC=1;MLEAF=0.500;MQ=56.30;MQRankSum=-13.929;QD=6.64;ReadPosRankSum=1.249;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:151,49:0.24:200
chrY	13310581	rs201255328	GG	CA	1401.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.008;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=2.007;JOINED;MLEAC=1;MLEAF=0.500;MQ=56.40;MQRankSum=-14.023;QD=6.74;ReadPosRankSum=1.582;SOR=0.879;set=HC	GT:AD:AF:DP	0/1:156,52:0.25:208
chrY	13310602	rs200323052	G	A	2821.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.561;ClippingRankSum=0.000;DB;DP=262;ExcessHet=3.0103;FS=1.626;MLEAC=1;MLEAF=0.500;MQ=56.31;MQRankSum=-14.187;QD=10.81;ReadPosRankSum=2.552;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:181,80:0.31:261
chrY	13310606	rs201423743	TG	CA	2803.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.237;ClippingRankSum=0.000;DB;DP=266;ExcessHet=3.0103;FS=2.259;JOINED;MLEAC=1;MLEAF=0.500;MQ=56.31;MQRankSum=-14.318;QD=10.58;ReadPosRankSum=2.908;SOR=0.847;set=HC	GT:AD:AF:DP	0/1:184,81:0.31:265
chrY	13310610	rs74510459	A	C	2800.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.164;ClippingRankSum=0.000;DB;DP=272;ExcessHet=3.0103;FS=2.956;MLEAC=1;MLEAF=0.500;MQ=56.39;MQRankSum=-14.505;QD=10.33;ReadPosRankSum=3.906;SOR=0.902;set=HC	GT:AD:AF:DP	0/1:190,81:0.30:271
chrY	13310621	rs74943081	CC	AA	2316.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;JOINED;set=Intersection	GT:AD:AF:DP	0/1:193,70:0.27:263
chrY	13310679	rs75367388	A	G	1443.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.121;ClippingRankSum=0.000;DB;DP=217;ExcessHet=3.0103;FS=24.173;MLEAC=1;MLEAF=0.500;MQ=56.20;MQRankSum=-13.642;QD=6.72;ReadPosRankSum=-3.662;SOR=1.998;set=HC	GT:AD:AF:DP	0/1:164,51:0.24:215
chrY	13310683	rs78176760	T	C	1451.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.710;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=27.808;MLEAC=1;MLEAF=0.500;MQ=56.48;MQRankSum=-13.760;QD=6.98;ReadPosRankSum=-1.864;SOR=2.293;set=HC	GT:AD:AF:DP	0/1:166,42:0.20:208
chrY	13310688	.	TG	T	1288.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.186;ClippingRankSum=0.000;DP=210;ExcessHet=3.0103;FS=38.791;MLEAC=1;MLEAF=0.500;MQ=56.70;MQRankSum=-13.760;QD=6.20;ReadPosRankSum=-0.923;SOR=2.883;set=HC	GT:AD:AF:DP	0/1:169,39:0.19:208
chrY	13310691	.	TC	T	1130.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.814;ClippingRankSum=0.000;DP=206;ExcessHet=3.0103;FS=35.502;MLEAC=1;MLEAF=0.500;MQ=56.61;MQRankSum=-13.642;QD=5.54;ReadPosRankSum=-1.067;SOR=2.596;set=HC	GT:AD:AF:DP	0/1:165,39:0.19:204
chrY	13310719	rs79308907	G	A	1485.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.551;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=32.567;MLEAC=1;MLEAF=0.500;MQ=55.66;MQRankSum=-12.941;QD=8.07;ReadPosRankSum=-1.279;SOR=1.660;set=HC	GT:AD:AF:DP	0/1:138,46:0.25:184
chrY	13310719	.	GCC	ACA	1898	.	AC=1;AF=0.500;AN=2;BRF=0.52;FR=0.5000;HP=2;HapScore=1;MGOF=50;MMLQ=28;MQ=49.43;NF=30;NR=18;PP=1898;QD=40.6555807263;SC=CGCAGCATCTGCCGACAGGAC;SbPval=0.06;Source=Platypus;TC=154;TCF=69;TCR=85;TR=48;WE=13310729;WS=13310709;set=Platypus	GT:AD:AF:DP	1/0:106,48:0.31:154
chrY	13310721	rs62599741	C	A	1485.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.455;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=35.655;MLEAC=1;MLEAF=0.500;MQ=55.64;MQRankSum=-12.920;QD=8.35;ReadPosRankSum=-1.320;SOR=1.652;set=HC	GT:AD:AF:DP	0/1:132,46:0.26:178
chrY	13310740	rs75526384	G	A	871.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:113,50:0.31:163
chrY	13310768	rs79431658	G	C	2317.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.491;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=5.562;MLEAC=1;MLEAF=0.500;MQ=54.99;MQRankSum=-8.611;QD=17.30;ReadPosRankSum=-0.254;SOR=0.361;set=HC	GT:AD:AF:DP	0/1:72,62:0.46:134
chrY	13310775	rs79927335	A	G	2343.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.814;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=3.344;MLEAC=1;MLEAF=0.500;MQ=55.03;MQRankSum=-8.183;QD=18.31;ReadPosRankSum=0.878;SOR=0.457;set=HC	GT:AD:AF:DP	0/1:67,61:0.48:128
chrY	13310784	rs75891039	T	G	2383.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.316;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=2.338;MLEAC=1;MLEAF=0.500;MQ=55.07;MQRankSum=-7.980;QD=18.48;ReadPosRankSum=2.374;SOR=0.511;set=HC	GT:AD:AF:DP	0/1:66,63:0.49:129
chrY	14107068	.	A	C	92	.	AC=1;AF=0.500;AN=2;BRF=0.21;FR=0.5000;HP=1;HapScore=2;MGOF=5;MMLQ=28;MQ=48.87;NF=7;NR=0;PP=92;QD=18.110173221;SC=GTTCTGCCAGATCCATACTAT;SbPval=1.0;Source=Platypus;TC=29;TCF=18;TCR=11;TR=7;WE=14107076;WS=14107058;set=Platypus	GT:AD:AF:DP	0/1:22,7:0.24:29
chrY	14107314	.	T	C	243	.	AC=1;AF=0.500;AN=2;BRF=0.28;FR=0.5000;HP=3;HapScore=2;MGOF=2;MMLQ=24;MQ=44.84;NF=0;NR=18;PP=243;QD=15.4317340304;SC=GCGGGGACCCTGACACCCAGC;SbPval=1.0;Source=Platypus;TC=63;TCF=20;TCR=43;TR=18;WE=14107322;WS=14107304;set=Platypus	GT:AD:AF:DP	1/0:45,18:0.29:63
chrY	14847792	rs2032597	A	C	157.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chrY	14898383	rs72625379	G	A	714.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chrY	14954404	rs147207338	C	CT	501.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.992;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=0.877;QD=10.68;ReadPosRankSum=-2.493;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:15,32:0.68:47
chrY	14958218	rs13304344	C	T	526.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chrY	14968772	.	TA	T	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.000;ClippingRankSum=0.000;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.59;ReadPosRankSum=-0.124;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:41,13:0.24:54
chrY	15027529	rs2032636	T	G	2186.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chrY	16952347	.	T	C	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.245;ClippingRankSum=0.000;DP=221;ExcessHet=3.0103;FS=18.482;MLEAC=1;MLEAF=0.500;MQ=58.53;MQRankSum=-14.454;QD=0.15;ReadPosRankSum=-6.639;SOR=2.450;set=HC	GT:AD:AF:DP	0/1:195,24:0.11:219
chrY	21154323	rs10465459	G	A	170.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:10,8:0.44:18
chrY	21154466	rs10465460	T	A	648.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:40,34:0.46:74
chrY	21477811	.	A	AAAAG	476.86	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.074;ClippingRankSum=0.000;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=36.68;ReadPosRankSum=1.072;SOR=3.767;set=HC	GT:AD:AF:DP	0/1:1,12:0.92:13
chrY	21867787	rs2032631	A	G	467.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14